Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26303135
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.30
Warning! 1968672 characters in sequence are not A, C, G, or T
File 37 of 66
Found at i:12944253 original size:9 final size:9
Alignment explanation
Indices: 12944236--12944267 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
12944226 CATTTAAATT
12944236 TGTTTTTGA
1 TGTTTTTGA
*
12944245 TGTTCTTGA
1 TGTTTTTGA
12944254 TGTTTTTGA
1 TGTTTTTGA
12944263 TGTTT
1 TGTTT
12944268 ATGGTATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.09, C:0.03, G:0.22, T:0.66
Consensus pattern (9 bp):
TGTTTTTGA
Found at i:12946616 original size:18 final size:19
Alignment explanation
Indices: 12946593--12946632 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
12946583 CAAATGTAAA
12946593 ATTTTA-GAATAAAATAAT
1 ATTTTATGAATAAAATAAT
12946611 ATTTTATGAATAAAATAAT
1 ATTTTATGAATAAAATAAT
12946630 ATT
1 ATT
12946633 AAAATATAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 6 0.29
19 15 0.71
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (19 bp):
ATTTTATGAATAAAATAAT
Found at i:12947485 original size:21 final size:21
Alignment explanation
Indices: 12947461--12947523 Score: 60
Period size: 19 Copynumber: 3.0 Consensus size: 21
12947451 CCGAGAGCAA
12947461 GAAAAAGAAAGAAAGAGAAAG
1 GAAAAAGAAAGAAAGAGAAAG
12947482 G--AAAGAAAGAAAGGAGATAAAG
1 GAAAAAGAAAGAAA-GAG--AAAG
*
12947504 GAAGAAAGAAAG-GAGAGAAA
1 GAA-AAAGAAAGAAAGAGAAA
12947524 ATCTTAGAGG
Statistics
Matches: 35, Mismatches: 1, Indels: 12
0.73 0.02 0.25
Matches are distributed among these distances:
19 11 0.31
20 3 0.09
21 4 0.11
22 5 0.14
23 3 0.09
24 1 0.03
25 8 0.23
ACGTcount: A:0.67, C:0.00, G:0.32, T:0.02
Consensus pattern (21 bp):
GAAAAAGAAAGAAAGAGAAAG
Found at i:12952642 original size:36 final size:36
Alignment explanation
Indices: 12952591--12952760 Score: 201
Period size: 36 Copynumber: 4.8 Consensus size: 36
12952581 GAAAAGTTAA
* *
12952591 AAAGGTTGTGGTTGATCCAAT-AAAGGCATTGTATTG
1 AAAGGTTGTGCTTGATCC-TTGAAAGGCATTGTATTG
*
12952627 AAAGGTTGTGCTTGATTCTTGAAAGGCATTGTATTG
1 AAAGGTTGTGCTTGATCCTTGAAAGGCATTGTATTG
*
12952663 AATA-GTTGTGCTTGATCCTTGAAAGACA-T-T-TT-
1 AA-AGGTTGTGCTTGATCCTTGAAAGGCATTGTATTG
* *
12952695 AAAGGTTATGCTTGATTCTTGAAAGGCATTGTATTG
1 AAAGGTTGTGCTTGATCCTTGAAAGGCATTGTATTG
*
12952731 AATA-GTTGTGCTTGATCCTTGAAAGACATT
1 AA-AGGTTGTGCTTGATCCTTGAAAGGCATT
12952761 TTAAAGGTTA
Statistics
Matches: 115, Mismatches: 11, Indels: 16
0.81 0.08 0.11
Matches are distributed among these distances:
31 1 0.01
32 23 0.20
33 3 0.03
34 2 0.02
35 4 0.03
36 80 0.70
37 2 0.02
ACGTcount: A:0.28, C:0.10, G:0.24, T:0.38
Consensus pattern (36 bp):
AAAGGTTGTGCTTGATCCTTGAAAGGCATTGTATTG
Found at i:12952708 original size:68 final size:68
Alignment explanation
Indices: 12952627--12952777 Score: 293
Period size: 68 Copynumber: 2.2 Consensus size: 68
12952617 CATTGTATTG
*
12952627 AAAGGTTGTGCTTGATTCTTGAAAGGCATTGTATTGAATAGTTGTGCTTGATCCTTGAAAGACAT
1 AAAGGTTATGCTTGATTCTTGAAAGGCATTGTATTGAATAGTTGTGCTTGATCCTTGAAAGACAT
12952692 TTT
66 TTT
12952695 AAAGGTTATGCTTGATTCTTGAAAGGCATTGTATTGAATAGTTGTGCTTGATCCTTGAAAGACAT
1 AAAGGTTATGCTTGATTCTTGAAAGGCATTGTATTGAATAGTTGTGCTTGATCCTTGAAAGACAT
12952760 TTT
66 TTT
12952763 AAAGGTTATGCTTGA
1 AAAGGTTATGCTTGA
12952778 GCTTTAAAAA
Statistics
Matches: 82, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
68 82 1.00
ACGTcount: A:0.28, C:0.10, G:0.23, T:0.39
Consensus pattern (68 bp):
AAAGGTTATGCTTGATTCTTGAAAGGCATTGTATTGAATAGTTGTGCTTGATCCTTGAAAGACAT
TTT
Found at i:12958120 original size:27 final size:28
Alignment explanation
Indices: 12958087--12958150 Score: 80
Period size: 27 Copynumber: 2.3 Consensus size: 28
12958077 TAATTTTTAA
12958087 TTATAATTTAG-TTATTTTTAATT-A-TTT
1 TTATAATTT-GTTTATTTTT-ATTAAGTTT
12958114 TTATAATTTGTTTATTTTTATTAAGTTT
1 TTATAATTTGTTTATTTTTATTAAGTTT
*
12958142 TTTTAATTT
1 TTATAATTT
12958151 TATATTTATT
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
26 4 0.12
27 18 0.55
28 11 0.33
ACGTcount: A:0.27, C:0.00, G:0.05, T:0.69
Consensus pattern (28 bp):
TTATAATTTGTTTATTTTTATTAAGTTT
Found at i:12982672 original size:51 final size:51
Alignment explanation
Indices: 12982554--12982672 Score: 141
Period size: 51 Copynumber: 2.4 Consensus size: 51
12982544 GGAACTCCCA
* ** *
12982554 TTCTCATTGTAGTGA-AAGTAGTGCAAAAAAAAGTTTGAGAAACAAAAAGT
1 TTCTCACTGTAGTGAGAAAAAGTGCAAAAAAAAGTGTGAGAAACAAAAAGT
* ** * * *
12982604 TTCTCACTGCAACGAGAAAAAGTGCAAAAATATGTGTGAGAAACAAAGAGT
1 TTCTCACTGTAGTGAGAAAAAGTGCAAAAAAAAGTGTGAGAAACAAAAAGT
12982655 TTCTCACTGTAGTGAGAA
1 TTCTCACTGTAGTGAGAA
12982673 TGAAATCTAG
Statistics
Matches: 55, Mismatches: 13, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
50 11 0.20
51 44 0.80
ACGTcount: A:0.43, C:0.12, G:0.21, T:0.24
Consensus pattern (51 bp):
TTCTCACTGTAGTGAGAAAAAGTGCAAAAAAAAGTGTGAGAAACAAAAAGT
Found at i:12984551 original size:26 final size:25
Alignment explanation
Indices: 12984516--12984564 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
12984506 AAAAAACCTT
*
12984516 TGCTTTTATA-TTTCTTGTTTTTATG
1 TGCTTTTATAGTTT-TTGCTTTTATG
12984541 TGCTTGTTATAGTTTTTGCTTTTA
1 TGCTT-TTATAGTTTTTGCTTTTA
12984565 AACTTCAAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 5 0.24
26 13 0.62
27 3 0.14
ACGTcount: A:0.12, C:0.08, G:0.14, T:0.65
Consensus pattern (25 bp):
TGCTTTTATAGTTTTTGCTTTTATG
Found at i:12987266 original size:26 final size:25
Alignment explanation
Indices: 12987234--12987282 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 25
12987224 ACTTGAAGTT
12987234 TAAAAGCAA-AAACTATAACAAGCACA
1 TAAAAGCAAGAAA-TATAA-AAGCACA
12987260 TAAAAGCAAGAAATATAAAAGCA
1 TAAAAGCAAGAAATATAAAAGCA
12987283 AAGTTTTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 5 0.23
26 14 0.64
27 3 0.14
ACGTcount: A:0.63, C:0.14, G:0.10, T:0.12
Consensus pattern (25 bp):
TAAAAGCAAGAAATATAAAAGCACA
Found at i:12993112 original size:36 final size:36
Alignment explanation
Indices: 12992990--12993119 Score: 118
Period size: 36 Copynumber: 3.6 Consensus size: 36
12992980 GAAATCTTGC
* ** * *
12992990 TTTTAACAAGATCAAGTGATAACCTTTACAATGGTT
1 TTTTAACAAAATCAAGCAATAACCCTTACAATTGTT
* * * *
12993026 TTTTCAAC-AAAGCAGGCAATAACCCTTACACTTGCT
1 TTTT-AACAAAATCAAGCAATAACCCTTACAATTGTT
**** *
12993062 TTTTAATGGGATCAAGCAATAACCCTTACATTTGTT
1 TTTTAACAAAATCAAGCAATAACCCTTACAATTGTT
12993098 TTTTAACAAAATCAAGCAATAA
1 TTTTAACAAAATCAAGCAATAA
12993120 ACACCGACTT
Statistics
Matches: 72, Mismatches: 20, Indels: 4
0.75 0.21 0.04
Matches are distributed among these distances:
35 2 0.03
36 67 0.93
37 3 0.04
ACGTcount: A:0.37, C:0.18, G:0.12, T:0.33
Consensus pattern (36 bp):
TTTTAACAAAATCAAGCAATAACCCTTACAATTGTT
Found at i:12994264 original size:31 final size:31
Alignment explanation
Indices: 12994229--12994287 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
12994219 AGGGTAGATA
* * *
12994229 CTCTGCAACAGTTTTTTTTTTTTAGCAAATG
1 CTCTGCAAAAGGTTTTTTTTCTTAGCAAATG
12994260 CTCTGCAAAAGGTTTTTTTTCTTAGCAA
1 CTCTGCAAAAGGTTTTTTTTCTTAGCAA
12994288 GCTTCATAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.24, C:0.17, G:0.14, T:0.46
Consensus pattern (31 bp):
CTCTGCAAAAGGTTTTTTTTCTTAGCAAATG
Found at i:12999785 original size:42 final size:41
Alignment explanation
Indices: 12999721--12999851 Score: 199
Period size: 42 Copynumber: 3.1 Consensus size: 41
12999711 GCATATAGTA
* *
12999721 GAGTTAGCAACGGCTTATGTGCACTCCCACTCACACATAGCC
1 GAGTCAGCAACGGCTTATGTGCACTCCTACTCACACATAG-C
12999763 GAGTCAGCAACGGCTTATGTGCACTCCTACTCACACATAGC
1 GAGTCAGCAACGGCTTATGTGCACTCCTACTCACACATAGC
* *
12999804 TAGGTCAGCAACGGCTTATGTGCACTCCTACTCGCACATAGTC
1 GA-GTCAGCAACGGCTTATGTGCACTCCTACTCACACATAG-C
12999847 GAGTC
1 GAGTC
12999852 CAAATCAACA
Statistics
Matches: 82, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
41 2 0.02
42 78 0.95
43 2 0.02
ACGTcount: A:0.25, C:0.31, G:0.21, T:0.23
Consensus pattern (41 bp):
GAGTCAGCAACGGCTTATGTGCACTCCTACTCACACATAGC
Found at i:13014825 original size:8 final size:8
Alignment explanation
Indices: 13014806--13014861 Score: 53
Period size: 8 Copynumber: 7.0 Consensus size: 8
13014796 AAAATTCATA
13014806 AATTTAATT
1 AATTTAA-T
13014815 AATTTAAT
1 AATTTAAT
*
13014823 AATTTTAT
1 AATTTAAT
13014831 ATATTTAAT
1 A-ATTTAAT
* *
13014840 TATATAA-
1 AATTTAAT
13014847 AA-TTAAT
1 AATTTAAT
13014854 AATTTAAT
1 AATTTAAT
13014862 TACCAATAAT
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
6 3 0.08
7 3 0.08
8 19 0.50
9 13 0.34
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (8 bp):
AATTTAAT
Found at i:13017312 original size:22 final size:22
Alignment explanation
Indices: 13017284--13017326 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
13017274 AAAAAAACAA
*
13017284 CTTTAAAACCAAATGTTCTGAC
1 CTTTAAAACCAAATGCTCTGAC
*
13017306 CTTTAAAATCAAATGCTCTGA
1 CTTTAAAACCAAATGCTCTGA
13017327 TACCACTCGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.37, C:0.21, G:0.09, T:0.33
Consensus pattern (22 bp):
CTTTAAAACCAAATGCTCTGAC
Found at i:13022105 original size:19 final size:19
Alignment explanation
Indices: 13022081--13022126 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 19
13022071 TTAATATTTT
13022081 AATATTATTTTATT-TATAA
1 AATATTATTTTATTCTA-AA
13022100 AATATTATTTTATTCTAAA
1 AATATTATTTTATTCTAAA
*
13022119 AATTTTAT
1 AATATTAT
13022127 CTTGTCTCCT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 23 0.92
20 2 0.08
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (19 bp):
AATATTATTTTATTCTAAA
Found at i:13023037 original size:33 final size:33
Alignment explanation
Indices: 13022990--13023056 Score: 100
Period size: 33 Copynumber: 2.0 Consensus size: 33
13022980 TATAAATATT
*
13022990 TATTTAGCTTAAAATAAAAGTACAAAAGCTTGA
1 TATTTAGCTTAAAATAAAAGAACAAAAGCTTGA
*
13023023 TATTTAG-TTCAAAATAAAAGAACAAAGGCTTGA
1 TATTTAGCTT-AAAATAAAAGAACAAAAGCTTGA
13023056 T
1 T
13023057 TGAACGTAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
32 2 0.06
33 29 0.94
ACGTcount: A:0.48, C:0.09, G:0.13, T:0.30
Consensus pattern (33 bp):
TATTTAGCTTAAAATAAAAGAACAAAAGCTTGA
Found at i:13025984 original size:5 final size:5
Alignment explanation
Indices: 13025974--13026000 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
13025964 TTGCAAATTA
13025974 CTTTT CTTTT CTTTT CTTTT CTTTT CT
1 CTTTT CTTTT CTTTT CTTTT CTTTT CT
13026001 AGGAAACAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (5 bp):
CTTTT
Found at i:13029629 original size:2 final size:2
Alignment explanation
Indices: 13029624--13029656 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
13029614 TTTTTTTAGT
13029624 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
13029657 TGTTGGACTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:13038710 original size:169 final size:169
Alignment explanation
Indices: 13038431--13038777 Score: 547
Period size: 169 Copynumber: 2.1 Consensus size: 169
13038421 TTTTTATTAA
* * * * *
13038431 CTTTTCATTTTTGTATGAAATTATCTCTTCTTATTAATCTTTTTTGAGTGATTTATTCTTCTTTT
1 CTTTTCATTTTTATATGAAATAATCTCTTATTATTAATCTTTTTTAACTGATTTATTCTTCTTTT
*
13038496 GCTGACCTCTGACTCTGTGTTGGCTTTGATGCAAGAAACAGAGGAAATCAAAGCATACCAAAATT
66 GCTGACCTCTGACTCTGTGTTGGCTTTCATGCAAGAAACAGAGGAAATCAAAGCATACCAAAATT
*
13038561 GACACCTTATT-CTTCTTTTCCTTTTCCATTGGTTCTTCC
131 GACACCTT-TTCCTTCATTTCCTTTTCCATTGGTTCTTCC
13038600 CTTTTCATTTTTATATGAAATAATCTCTTATTATTAATCTTTTTTAACTGATTTATTCTTAC-TT
1 CTTTTCATTTTTATATGAAATAATCTCTTATTATTAATCTTTTTTAACTGATTTATTCTT-CTTT
* *
13038664 TGCTGCCCTTTGACTCTGTGTTGGCTTTCAGTG-AAGAAACAGAGGAAATCAAAGCATACCAAAA
65 TGCTGACCTCTGACTCTGTGTTGGCTTTCA-TGCAAGAAACAGAGGAAATCAAAGCATACCAAAA
* *
13038728 TTGACATCTTTTCCTTCATTTCCTTTTCCATTGGTTCTTCT
129 TTGACACCTTTTCCTTCATTTCCTTTTCCATTGGTTCTTCC
13038769 CTTTTCATT
1 CTTTTCATT
13038778 GTTGGTCTAT
Statistics
Matches: 164, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
168 2 0.01
169 159 0.97
170 3 0.02
ACGTcount: A:0.23, C:0.19, G:0.12, T:0.46
Consensus pattern (169 bp):
CTTTTCATTTTTATATGAAATAATCTCTTATTATTAATCTTTTTTAACTGATTTATTCTTCTTTT
GCTGACCTCTGACTCTGTGTTGGCTTTCATGCAAGAAACAGAGGAAATCAAAGCATACCAAAATT
GACACCTTTTCCTTCATTTCCTTTTCCATTGGTTCTTCC
Found at i:13040989 original size:23 final size:23
Alignment explanation
Indices: 13040959--13041010 Score: 104
Period size: 23 Copynumber: 2.3 Consensus size: 23
13040949 AGTAATAGAG
13040959 AGCTTGTTAAGCTTCAAAGTGGT
1 AGCTTGTTAAGCTTCAAAGTGGT
13040982 AGCTTGTTAAGCTTCAAAGTGGT
1 AGCTTGTTAAGCTTCAAAGTGGT
13041005 AGCTTG
1 AGCTTG
13041011 AACCTGTTGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.25, C:0.13, G:0.27, T:0.35
Consensus pattern (23 bp):
AGCTTGTTAAGCTTCAAAGTGGT
Found at i:13050776 original size:2 final size:2
Alignment explanation
Indices: 13050769--13050796 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
13050759 CTTTGAGAAC
13050769 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
13050797 GAGGAAATTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:13051273 original size:22 final size:22
Alignment explanation
Indices: 13051212--13051296 Score: 80
Period size: 22 Copynumber: 3.9 Consensus size: 22
13051202 GCAAATCAAT
* * *
13051212 TAGTTATTAGGTATTGTATTAC
1 TAGTTTTTAGGTATTGTGTCAC
* * *
13051234 TAGTGTTTAGATATTGTGTCAT
1 TAGTTTTTAGGTATTGTGTCAC
**
13051256 TAGTTTTTAGGTATTGTGAGAC
1 TAGTTTTTAGGTATTGTGTCAC
* *
13051278 TAGTTTTTAAGCATTGTGT
1 TAGTTTTTAGGTATTGTGT
13051297 GACTTAATCA
Statistics
Matches: 49, Mismatches: 14, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 49 1.00
ACGTcount: A:0.24, C:0.05, G:0.22, T:0.49
Consensus pattern (22 bp):
TAGTTTTTAGGTATTGTGTCAC
Found at i:13051294 original size:44 final size:44
Alignment explanation
Indices: 13051210--13051296 Score: 106
Period size: 44 Copynumber: 2.0 Consensus size: 44
13051200 AAGCAAATCA
* *
13051210 ATTAGTTATTAGGTATTGTATTACTAGTGTTTAGATATTGTGTC
1 ATTAGTTATTAGGTATTGTATGACTAGTGTTTAGACATTGTGTC
* *
13051254 ATTAGTTTTTAGGTATTGTGA-GACTAGTTTTTA-AGCATTGTGT
1 ATTAGTTATTAGGTATTGT-ATGACTAGTGTTTAGA-CATTGTGT
13051297 GACTTAATCA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
43 1 0.03
44 35 0.95
45 1 0.03
ACGTcount: A:0.24, C:0.05, G:0.22, T:0.49
Consensus pattern (44 bp):
ATTAGTTATTAGGTATTGTATGACTAGTGTTTAGACATTGTGTC
Found at i:13051662 original size:18 final size:20
Alignment explanation
Indices: 13051621--13051662 Score: 52
Period size: 18 Copynumber: 2.2 Consensus size: 20
13051611 ATATATATAA
* *
13051621 AAAATCACTCCAAAATGCTT
1 AAAATCACTCCAAAACGCTC
13051641 AAAAT-ACT-CAAAACGCTC
1 AAAATCACTCCAAAACGCTC
13051659 AAAA
1 AAAA
13051663 GTTTTTTCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 12 0.60
19 3 0.15
20 5 0.25
ACGTcount: A:0.52, C:0.24, G:0.05, T:0.19
Consensus pattern (20 bp):
AAAATCACTCCAAAACGCTC
Found at i:13060873 original size:13 final size:13
Alignment explanation
Indices: 13060855--13060881 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
13060845 TTCAACATAG
13060855 TTACATCTAAATA
1 TTACATCTAAATA
13060868 TTACATCTAAATA
1 TTACATCTAAATA
13060881 T
1 T
13060882 GATCCAAGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.15, G:0.00, T:0.41
Consensus pattern (13 bp):
TTACATCTAAATA
Found at i:13064908 original size:51 final size:51
Alignment explanation
Indices: 13064852--13064952 Score: 125
Period size: 51 Copynumber: 2.0 Consensus size: 51
13064842 ATTAATATGG
*
13064852 TATTTTCAC-CTTTCACATCAATATCATTATGTTATAAT-ATATGATAATGTA
1 TATTTTCACTC-TCCACATCAATATCATTATGTTATAATGA-ATGATAATGTA
** * *
13064903 TATTTTCACTCTCCACATTGATGTCATTATGTTATAGTGAATGATAATGT
1 TATTTTCACTCTCCACATCAATATCATTATGTTATAATGAATGATAATGT
13064953 GATACGATTA
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
51 41 0.95
52 2 0.05
ACGTcount: A:0.32, C:0.14, G:0.10, T:0.45
Consensus pattern (51 bp):
TATTTTCACTCTCCACATCAATATCATTATGTTATAATGAATGATAATGTA
Found at i:13066297 original size:28 final size:29
Alignment explanation
Indices: 13066254--13066308 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
13066244 TTAGACTCAA
* *
13066254 AATAAAAACATGAAAATTTAATTAAATGT
1 AATAAAAACATAAAAAATTAATTAAATGT
*
13066283 AATAAAAA-ATAAAAAATTATTTAAAT
1 AATAAAAACATAAAAAATTAATTAAAT
13066309 TTTCTTAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 15 0.65
29 8 0.35
ACGTcount: A:0.64, C:0.02, G:0.04, T:0.31
Consensus pattern (29 bp):
AATAAAAACATAAAAAATTAATTAAATGT
Found at i:13067518 original size:24 final size:24
Alignment explanation
Indices: 13067491--13067556 Score: 123
Period size: 24 Copynumber: 2.8 Consensus size: 24
13067481 GAAGCTAATA
13067491 GGCAAGTAGAAAGCAACAGTCGAG
1 GGCAAGTAGAAAGCAACAGTCGAG
13067515 GGCAAGTAGAAAGCAACAGTCGAG
1 GGCAAGTAGAAAGCAACAGTCGAG
*
13067539 GGCAATTAGAAAGCAACA
1 GGCAAGTAGAAAGCAACA
13067557 CATCGGCTTC
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.44, C:0.17, G:0.30, T:0.09
Consensus pattern (24 bp):
GGCAAGTAGAAAGCAACAGTCGAG
Found at i:13070295 original size:19 final size:19
Alignment explanation
Indices: 13070268--13070305 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
13070258 CCATTTGACT
*
13070268 TATTAGAGTATTATTTGAG
1 TATTAGAGTATAATTTGAG
*
13070287 TATTTGAGTATAATTTGAG
1 TATTAGAGTATAATTTGAG
13070306 GGTTTGGCAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.21, T:0.47
Consensus pattern (19 bp):
TATTAGAGTATAATTTGAG
Found at i:13070311 original size:19 final size:19
Alignment explanation
Indices: 13070273--13070311 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
13070263 TGACTTATTA
* *
13070273 GAGTATTATTTGAGTATTT
1 GAGTATAATTTGAGGATTT
*
13070292 GAGTATAATTTGAGGGTTT
1 GAGTATAATTTGAGGATTT
13070311 G
1 G
13070312 GCAGTAAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.26, C:0.00, G:0.28, T:0.46
Consensus pattern (19 bp):
GAGTATAATTTGAGGATTT
Found at i:13085446 original size:29 final size:28
Alignment explanation
Indices: 13085387--13085446 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 28
13085377 AATTTTAAAT
* *
13085387 AAATTTTTATTTTTTATTATGTTTAATA
1 AAATTTTTATTTTTTATTATGATCAATA
*
13085415 AAATTTTTATATTTTTATTTTGAATCAA-A
1 AAATTTTTAT-TTTTTATTATG-ATCAATA
13085444 AAA
1 AAA
13085447 GTATTTATGA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
28 10 0.37
29 14 0.52
30 3 0.11
ACGTcount: A:0.38, C:0.02, G:0.03, T:0.57
Consensus pattern (28 bp):
AAATTTTTATTTTTTATTATGATCAATA
Found at i:13086138 original size:22 final size:22
Alignment explanation
Indices: 13086062--13086139 Score: 65
Period size: 22 Copynumber: 3.6 Consensus size: 22
13086052 ATGATTGTTT
* * *
13086062 TATTTTATTTTTTAAATATTAA
1 TATTTTATTTATAAAATACTAA
13086084 TATTTTATTTAT--AAT-CTAA
1 TATTTTATTTATAAAATACTAA
* *
13086103 TCA-TTAACATTATAAAATACTAA
1 T-ATTTTA-TTTATAAAATACTAA
13086126 TATTTTATTTATAA
1 TATTTTATTTATAA
13086140 TTTGAATGTT
Statistics
Matches: 44, Mismatches: 6, Indels: 12
0.71 0.10 0.19
Matches are distributed among these distances:
19 7 0.16
20 8 0.18
22 21 0.48
23 8 0.18
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.54
Consensus pattern (22 bp):
TATTTTATTTATAAAATACTAA
Found at i:13086628 original size:27 final size:27
Alignment explanation
Indices: 13086594--13086696 Score: 74
Period size: 27 Copynumber: 4.0 Consensus size: 27
13086584 NNNNNTTTTT
*
13086594 AAATATTAATAATTTATAATTGATTTA
1 AAATATTAATAATTTATAATTAATTTA
* **
13086621 AAATATTAACAATTGGTAATTTAATTTA
1 AAATATTAATAATTTATAA-TTAATTTA
* * *
13086649 TAAT-TT-A-AATATTATTA-TGA-TTA
1 AAATATTAATAAT-TTATAATTAATTTA
*
13086672 AAATATTAATACTTT-TAATTAATTT
1 AAATATTAATAATTTATAATTAATTT
13086697 CTGAATTCAA
Statistics
Matches: 56, Mismatches: 13, Indels: 15
0.67 0.15 0.18
Matches are distributed among these distances:
23 6 0.11
24 6 0.11
25 8 0.14
26 8 0.14
27 18 0.32
28 10 0.18
ACGTcount: A:0.46, C:0.02, G:0.04, T:0.49
Consensus pattern (27 bp):
AAATATTAATAATTTATAATTAATTTA
Found at i:13086867 original size:16 final size:16
Alignment explanation
Indices: 13086846--13086877 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
13086836 TAATTTTTAT
*
13086846 TTATAATTTAAATATA
1 TTATAATTAAAATATA
13086862 TTATAATTAAAATATA
1 TTATAATTAAAATATA
13086878 AAAATATTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
TTATAATTAAAATATA
Found at i:13097587 original size:2 final size:2
Alignment explanation
Indices: 13097580--13097622 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
13097570 CTTTGGATGT
13097580 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
13097622 T
1 T
13097623 TTTAAAACAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:13102669 original size:35 final size:36
Alignment explanation
Indices: 13102628--13102695 Score: 93
Period size: 35 Copynumber: 1.9 Consensus size: 36
13102618 AGAATCATCC
*
13102628 TGTGCACACCTACACCGCACAAGGCA-ATATCACCA
1 TGTGCACACCCACACCGCACAAGGCATATATCACCA
* * *
13102663 TGTGCACTCCCACATCGCACATGGCATATATCA
1 TGTGCACACCCACACCGCACAAGGCATATATCA
13102696 TCAGTGTGTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
35 22 0.79
36 6 0.21
ACGTcount: A:0.31, C:0.35, G:0.15, T:0.19
Consensus pattern (36 bp):
TGTGCACACCCACACCGCACAAGGCATATATCACCA
Found at i:13102774 original size:53 final size:52
Alignment explanation
Indices: 13102678--13102782 Score: 192
Period size: 53 Copynumber: 2.0 Consensus size: 52
13102668 ACTCCCACAT
13102678 CGCACATGGCATATATCATCAGTGTGTGCACTCACACAACACACCACTATCA
1 CGCACATGGCATATATCATCAGTGTGTGCACTCACACAACACACCACTATCA
*
13102730 CGCACATGGCATATATCATCAAGTGTGTGCACTCACACAGCACACCACTATCA
1 CGCACATGGCATATATCATC-AGTGTGTGCACTCACACAACACACCACTATCA
13102783 TCGTCATGTG
Statistics
Matches: 51, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
52 20 0.39
53 31 0.61
ACGTcount: A:0.32, C:0.32, G:0.14, T:0.21
Consensus pattern (52 bp):
CGCACATGGCATATATCATCAGTGTGTGCACTCACACAACACACCACTATCA
Found at i:13106605 original size:73 final size:73
Alignment explanation
Indices: 13106468--13106652 Score: 201
Period size: 73 Copynumber: 2.5 Consensus size: 73
13106458 CATACAAAAT
* * * * * * * ** *
13106468 GCTCTTAGTCGACTAACATACTTCTTAGTCGATTAAGTTGTTTCTTTCTTCTGATCTTATTTTCT
1 GCTCTTAGTCGACTAACATGCTTCTTAGTTGATTAAGTCGTCTCTGTCTACTGAACCCAGTTTCT
13106533 AGCAGTAA
66 AGCAGTAA
*
13106541 GCTCTTAGTCGACTAATAATGCTTCTTAGTTGATTAAGTCGTCTCTGTC-ACTGAACCCAGTTTC
1 GCTCTTAGTCGACTAA-CATGCTTCTTAGTTGATTAAGTCGTCTCTGTCTACTGAACCCAGTTTC
* *
13106605 TGGCAGTGA
65 TAGCAGTAA
* * *
13106614 GCACTTAGTCGACTAACCATGTTTCTTAGTTGACTAAGT
1 GCTCTTAGTCGACTAA-CATGCTTCTTAGTTGATTAAGT
13106653 ATTTTCTATT
Statistics
Matches: 93, Mismatches: 18, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
73 67 0.72
74 26 0.28
ACGTcount: A:0.23, C:0.21, G:0.17, T:0.39
Consensus pattern (73 bp):
GCTCTTAGTCGACTAACATGCTTCTTAGTTGATTAAGTCGTCTCTGTCTACTGAACCCAGTTTCT
AGCAGTAA
Found at i:13109593 original size:2 final size:2
Alignment explanation
Indices: 13109588--13109618 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
13109578 ACACACACAC
13109588 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
13109619 CACATCATCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:13109695 original size:43 final size:42
Alignment explanation
Indices: 13109634--13109776 Score: 191
Period size: 40 Copynumber: 3.4 Consensus size: 42
13109624 CATCATGTAT
*
13109634 ACATAGCTGGGTCATCATCAGCTCATGTGCACTCCCCACTCGC
1 ACATAGCTGGGTCATCATCAGCTCATGTGCACT-CCCACACGC
*
13109677 ACATAACTGGGTCATCATCAGCTC--GTGCACTCCCACACGC
1 ACATAGCTGGGTCATCATCAGCTCATGTGCACTCCCACACGC
* *** *
13109717 ACATAGCTGGGTCATCATCAGCACATGTGTGTTCCCACATGC
1 ACATAGCTGGGTCATCATCAGCTCATGTGCACTCCCACACGC
*
13109759 ACATAGCTTGGTCATCAT
1 ACATAGCTGGGTCATCAT
13109777 TATCACAAAA
Statistics
Matches: 89, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
40 30 0.34
41 7 0.08
42 29 0.33
43 23 0.26
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24
Consensus pattern (42 bp):
ACATAGCTGGGTCATCATCAGCTCATGTGCACTCCCACACGC
Found at i:13114138 original size:6 final size:6
Alignment explanation
Indices: 13114127--13114151 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
13114117 GCCCATGATC
13114127 TATAAA TATAAA TATAAA TATAAA T
1 TATAAA TATAAA TATAAA TATAAA T
13114152 TCTTAATTGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (6 bp):
TATAAA
Found at i:13132084 original size:25 final size:25
Alignment explanation
Indices: 13132039--13132086 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
13132029 TCATTTTTAC
*
13132039 GAAATGAAATTGATTTATATGAAAT
1 GAAATGAAATTGATGTATATGAAAT
*
13132064 GAAATGAGATTTGATGT-TATGAA
1 GAAATGA-AATTGATGTATATGAA
13132087 TCATATTATG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 13 0.65
26 7 0.35
ACGTcount: A:0.44, C:0.00, G:0.21, T:0.35
Consensus pattern (25 bp):
GAAATGAAATTGATGTATATGAAAT
Found at i:13137808 original size:67 final size:67
Alignment explanation
Indices: 13137700--13137899 Score: 269
Period size: 67 Copynumber: 3.0 Consensus size: 67
13137690 GTTTTTACAA
** * * * *
13137700 TGGCTTTTCATCGGCTCAGCCACAACCTTTAACAATAGTTTTTACCGAGATCAACCAAAATCGAA
1 TGGCTTTTCAAAGGCTCAACCACAACCTTTAACAATGGTTTTTACCGAGATCAACCAAAACCCAA
13137765 AG
66 AG
* *
13137767 TGGCTTTTCAAAGGCTCAACCACAACCTTTAACAATGGTTTTTCACGGGGATCAACCAAAACCCA
1 TGGCTTTTCAAAGGCTCAACCACAACCTTTAACAATGGTTTTT-ACCGAGATCAACCAAAACCCA
13137832 AAG
65 AAG
* * *
13137835 TGGATTTTC-AAGGCTCAACCATAACCTTTAACAATGGTTTTT-CACGAGATTAACCAAAACCCA
1 TGGCTTTTCAAAGGCTCAACCACAACCTTTAACAATGGTTTTTAC-CGAGATCAACCAAAACCCA
13137898 AA
65 AA
13137900 ACTAACTTTT
Statistics
Matches: 118, Mismatches: 13, Indels: 5
0.87 0.10 0.04
Matches are distributed among these distances:
65 1 0.01
66 18 0.15
67 71 0.60
68 28 0.24
ACGTcount: A:0.34, C:0.25, G:0.14, T:0.26
Consensus pattern (67 bp):
TGGCTTTTCAAAGGCTCAACCACAACCTTTAACAATGGTTTTTACCGAGATCAACCAAAACCCAA
AG
Found at i:13138949 original size:13 final size:13
Alignment explanation
Indices: 13138931--13138957 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
13138921 CAAGCCCAAC
13138931 TCTATAAAATATT
1 TCTATAAAATATT
13138944 TCTATAAAATATT
1 TCTATAAAATATT
13138957 T
1 T
13138958 ACCATGTCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.48
Consensus pattern (13 bp):
TCTATAAAATATT
Found at i:13141898 original size:39 final size:39
Alignment explanation
Indices: 13141852--13141939 Score: 108
Period size: 39 Copynumber: 2.3 Consensus size: 39
13141842 AAGAAATCTC
13141852 GCTGCAGCGAAAAA-CTCTCTGTTTCATCAGTGA-AATTTT
1 GCTGCAGCGAAAAACCT-TCTGTTTC-TCAGTGACAATTTT
* ** *
13141891 GCTGCAGCGAGAAACCTTCTGTTTCTGGGTTACAATTTT
1 GCTGCAGCGAAAAACCTTCTGTTTCTCAGTGACAATTTT
13141930 GCTGCAGCGA
1 GCTGCAGCGA
13141940 GATTCAATCT
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
38 4 0.09
39 37 0.86
40 2 0.05
ACGTcount: A:0.24, C:0.22, G:0.23, T:0.32
Consensus pattern (39 bp):
GCTGCAGCGAAAAACCTTCTGTTTCTCAGTGACAATTTT
Found at i:13144582 original size:176 final size:175
Alignment explanation
Indices: 13144281--13144631 Score: 603
Period size: 176 Copynumber: 2.0 Consensus size: 175
13144271 CTGCTTACTC
* * *
13144281 ACTGGGATTTTATAATCTCACCACCCTCCTTTTCAACCATTTCAAGCTTGAGGTAGCATGTGGAT
1 ACTGGGATTTTATAATCTCACCACCCTCATTTTCAACCATTTCAAGCCTGAGGTAGCATGTAGAT
13144346 AGCAAATATCGTCAAGGATTATAGTTGGCTTTACTACTCCAAAAATTGTAAGTTTACTGCCTTTG
66 AGCAAATATCGTCAAGGATTATAGTTGGCTTTACTACTCCAAAAATTGTAAGTTTACTGCCTTTG
*
13144411 TGCATTTTTGTTCCTTGTGGGCCCACGAGTCACTGTAAAGTAAAT
131 TGCACTTTTGTTCCTTGTGGGCCCACGAGTCACTGTAAAGTAAAT
* * * * *
13144456 NACTGGGGTTTTATAATTTCACCACCCTCATTTTCAACTATTTCAGGCCTGAGGTAGCTTGTAGA
1 -ACTGGGATTTTATAATCTCACCACCCTCATTTTCAACCATTTCAAGCCTGAGGTAGCATGTAGA
13144521 TAGCAAATATCGTCAAGGATTATAGTTGGCTTTACTACTCCAAAAATTGTAAGTTTACTGCCTTT
65 TAGCAAATATCGTCAAGGATTATAGTTGGCTTTACTACTCCAAAAATTGTAAGTTTACTGCCTTT
*
13144586 GTGCACTTTTGTTTCTTGTGGGCCCACGAGTCACTGTAAAGTAAAT
130 GTGCACTTTTGTTCCTTGTGGGCCCACGAGTCACTGTAAAGTAAAT
13144632 TTCATATCCC
Statistics
Matches: 165, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
176 165 1.00
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (175 bp):
ACTGGGATTTTATAATCTCACCACCCTCATTTTCAACCATTTCAAGCCTGAGGTAGCATGTAGAT
AGCAAATATCGTCAAGGATTATAGTTGGCTTTACTACTCCAAAAATTGTAAGTTTACTGCCTTTG
TGCACTTTTGTTCCTTGTGGGCCCACGAGTCACTGTAAAGTAAAT
Found at i:13154377 original size:42 final size:42
Alignment explanation
Indices: 13154308--13154428 Score: 197
Period size: 42 Copynumber: 2.9 Consensus size: 42
13154298 TCATATGCAG
* *
13154308 CGGCTTATGTGCACTCCCACTCACACATAGCCGGGTCAGCAA
1 CGGCTTATGTGCACTCCTACTCGCACATAGCCGGGTCAGCAA
* * *
13154350 CGGTTTATGTGCACTCCTACTCGCACATAGTCGGGTTAGCAA
1 CGGCTTATGTGCACTCCTACTCGCACATAGCCGGGTCAGCAA
13154392 CGGCTTATGTGCACTCCTACTCGCACATAGCCGGGTC
1 CGGCTTATGTGCACTCCTACTCGCACATAGCCGGGTC
13154429 CACATCAATA
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.21, C:0.32, G:0.23, T:0.24
Consensus pattern (42 bp):
CGGCTTATGTGCACTCCTACTCGCACATAGCCGGGTCAGCAA
Found at i:13157246 original size:30 final size:30
Alignment explanation
Indices: 13157206--13157267 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
13157196 AGATTCCTTT
13157206 TCGCTACAACGAGAAGCTACAGTGACTATC
1 TCGCTACAACGAGAAGCTACAGTGACTATC
*
13157236 TCGCTGCAACGAGAAGCTACAGTGACTATC
1 TCGCTACAACGAGAAGCTACAGTGACTATC
13157266 TC
1 TC
13157268 ATTGCGGTGA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.21
Consensus pattern (30 bp):
TCGCTACAACGAGAAGCTACAGTGACTATC
Found at i:13157693 original size:43 final size:43
Alignment explanation
Indices: 13157584--13157686 Score: 136
Period size: 43 Copynumber: 2.4 Consensus size: 43
13157574 TTCCCAGCTC
* ** * *
13157584 ATGCGCACTCCTTACTCGCACATGGCTAGGTCATCACCGGGTT
1 ATGCGCACTCCCTACTCGCACATAACCAGGTCATCACCGGCTT
*
13157627 TTGCGCACTCCCTACTCGCACATAACCAGGTCATC-CTCGGCTT
1 ATGCGCACTCCCTACTCGCACATAACCAGGTCATCAC-CGGCTT
13157670 ATGCGCACTCCCTACTC
1 ATGCGCACTCCCTACTC
13157687 TTACATAGCC
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
42 1 0.02
43 51 0.98
ACGTcount: A:0.18, C:0.38, G:0.18, T:0.25
Consensus pattern (43 bp):
ATGCGCACTCCCTACTCGCACATAACCAGGTCATCACCGGCTT
Found at i:13160944 original size:26 final size:26
Alignment explanation
Indices: 13160908--13160963 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
13160898 AGATGCCAAC
*
13160908 TTGAGTTTGGAAACTAAGTATTGAAA
1 TTGAGTTTGGAAACTAACTATTGAAA
*
13160934 TTGAGTTTGGAAACTAACTCTTGAAA
1 TTGAGTTTGGAAACTAACTATTGAAA
13160960 TTGA
1 TTGA
13160964 CTAGGAAGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.36, C:0.07, G:0.21, T:0.36
Consensus pattern (26 bp):
TTGAGTTTGGAAACTAACTATTGAAA
Found at i:13164704 original size:20 final size:20
Alignment explanation
Indices: 13164679--13164724 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
13164669 CTTCTAAACC
13164679 TCAAATCATACTCCAATAAG
1 TCAAATCATACTCCAATAAG
*
13164699 TCAAATTATACTCCAATAAG
1 TCAAATCATACTCCAATAAG
13164719 TCAAAT
1 TCAAAT
13164725 GGGGCCAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.46, C:0.22, G:0.04, T:0.28
Consensus pattern (20 bp):
TCAAATCATACTCCAATAAG
Found at i:13171508 original size:19 final size:19
Alignment explanation
Indices: 13171481--13171517 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
13171471 TAATTATTAG
13171481 CCGAACGAGGGTTTCTCAA
1 CCGAACGAGGGTTTCTCAA
* *
13171500 CCGACCGAGTGTTTCTCA
1 CCGAACGAGGGTTTCTCA
13171518 CTAAACCTCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.22, C:0.30, G:0.24, T:0.24
Consensus pattern (19 bp):
CCGAACGAGGGTTTCTCAA
Found at i:13171733 original size:39 final size:39
Alignment explanation
Indices: 13171666--13171757 Score: 139
Period size: 39 Copynumber: 2.4 Consensus size: 39
13171656 CGAGATTCAA
* * *
13171666 TCTCACTGCAGCAAAATTGTAACCCAAAAACAGAAAGTT
1 TCTCGCTGCAGCGAAATTGCAACCCAAAAACAGAAAGTT
* *
13171705 TCTCGCTGTAGCGAAATTGCAACCCAAAAATAGAAAGTT
1 TCTCGCTGCAGCGAAATTGCAACCCAAAAACAGAAAGTT
13171744 TCTCGCTGCAGCGA
1 TCTCGCTGCAGCGA
13171758 GAATGAATTT
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 47 1.00
ACGTcount: A:0.37, C:0.24, G:0.17, T:0.22
Consensus pattern (39 bp):
TCTCGCTGCAGCGAAATTGCAACCCAAAAACAGAAAGTT
Found at i:13172210 original size:43 final size:43
Alignment explanation
Indices: 13172163--13172257 Score: 129
Period size: 43 Copynumber: 2.2 Consensus size: 43
13172153 CACTTCTTAT
** * *
13172163 TCGCACATGGCTGGGTCATCAC-CGGGTTATGCGCATTCCCTAC
1 TCGCACATAACTGGGTCATC-CTCGGCTTATGCGCACTCCCTAC
*
13172206 TCGCACATAACTGGGTCATCCTCGGCTTATGCGCACTCCTTAC
1 TCGCACATAACTGGGTCATCCTCGGCTTATGCGCACTCCCTAC
13172249 TCGCACATA
1 TCGCACATA
13172258 GCCGAGTCAA
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
42 1 0.02
43 45 0.98
ACGTcount: A:0.19, C:0.34, G:0.21, T:0.26
Consensus pattern (43 bp):
TCGCACATAACTGGGTCATCCTCGGCTTATGCGCACTCCCTAC
Found at i:13172504 original size:81 final size:80
Alignment explanation
Indices: 13172369--13172529 Score: 297
Period size: 81 Copynumber: 2.0 Consensus size: 80
13172359 ACCATTTCTC
13172369 AAGAGCTTGTTCCCAAGGCATTAATTTTTGAGAAAAGTTGTATAAAATCATTCAAACACTTTGTA
1 AAGAGCTTGTTCCCAAGGCATTAATTTTTGAGAAAAGTTGTATAAAATCATTCAAACACTTTGTA
13172434 CAAAACAGTCATATT
66 CAAAACAGTCATATT
13172449 NAAGAGTCTTGTTCCCAAGGCATTAA-TTTTGAGAAAAGTTGTATAAAATCATTCAAACACTTTG
1 -AAGAG-CTTGTTCCCAAGGCATTAATTTTTGAGAAAAGTTGTATAAAATCATTCAAACACTTTG
13172513 TACAAAACAGTCATATT
64 TACAAAACAGTCATATT
13172530 CCCAAAATAA
Statistics
Matches: 79, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
81 60 0.76
82 19 0.24
ACGTcount: A:0.39, C:0.15, G:0.14, T:0.32
Consensus pattern (80 bp):
AAGAGCTTGTTCCCAAGGCATTAATTTTTGAGAAAAGTTGTATAAAATCATTCAAACACTTTGTA
CAAAACAGTCATATT
Found at i:13174122 original size:23 final size:23
Alignment explanation
Indices: 13174095--13174143 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
13174085 TCAATCTTTT
*
13174095 GTACCAACTTTTTAAACATTGTA
1 GTACCAACTTTTCAAACATTGTA
13174118 GTACCAACTTTTCAAACATTGTA
1 GTACCAACTTTTCAAACATTGTA
13174141 GTA
1 GTA
13174144 GGAAGGGCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.35, C:0.18, G:0.10, T:0.37
Consensus pattern (23 bp):
GTACCAACTTTTCAAACATTGTA
Found at i:13178572 original size:30 final size:31
Alignment explanation
Indices: 13178516--13178579 Score: 103
Period size: 31 Copynumber: 2.1 Consensus size: 31
13178506 ACTATTAGTC
*
13178516 ATAAGGACTTATTTGGCTCAAAAATAAAAGT
1 ATAAAGACTTATTTGGCTCAAAAATAAAAGT
*
13178547 ATAAAGACTTATTTGGCT-TAAAATAAAAGT
1 ATAAAGACTTATTTGGCTCAAAAATAAAAGT
13178577 ATA
1 ATA
13178580 TCAGCTTAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 14 0.45
31 17 0.55
ACGTcount: A:0.47, C:0.08, G:0.14, T:0.31
Consensus pattern (31 bp):
ATAAAGACTTATTTGGCTCAAAAATAAAAGT
Found at i:13183030 original size:2 final size:2
Alignment explanation
Indices: 13183023--13183052 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
13183013 AAGAAGATGA
13183023 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
13183053 GTATTCTTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:13185176 original size:33 final size:33
Alignment explanation
Indices: 13185139--13185209 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
13185129 CAACAACATC
*
13185139 AACATACCACATCATCATCGATTATGACATGTT
1 AACATACCACATCATAATCGATTATGACATGTT
**
13185172 AACATACCACATCATAATTTATTATGACATGTT
1 AACATACCACATCATAATCGATTATGACATGTT
13185205 AACAT
1 AACAT
13185210 GCCATGTTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.39, C:0.21, G:0.07, T:0.32
Consensus pattern (33 bp):
AACATACCACATCATAATCGATTATGACATGTT
Found at i:13190472 original size:43 final size:43
Alignment explanation
Indices: 13190402--13190520 Score: 177
Period size: 43 Copynumber: 2.8 Consensus size: 43
13190392 GTAATTATGT
* *
13190402 TGACTCGGCTATGTGCGAGTAGGGAGTGCGCATAAGCCGAG-GA
1 TGACCCGGCTATGTGCGAGTAGGGAGTGCGCATAACCCG-GTGA
*
13190445 TGACCCGGTTATGTGCGAGTAGGGAGTGCGCATAACCCGGTGA
1 TGACCCGGCTATGTGCGAGTAGGGAGTGCGCATAACCCGGTGA
* *
13190488 TGACCCAGCCATGTGCGAGTAGGGAGTGCGCAT
1 TGACCCGGCTATGTGCGAGTAGGGAGTGCGCAT
13190521 GAGCTGGTGA
Statistics
Matches: 69, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
42 1 0.01
43 68 0.99
ACGTcount: A:0.22, C:0.21, G:0.38, T:0.19
Consensus pattern (43 bp):
TGACCCGGCTATGTGCGAGTAGGGAGTGCGCATAACCCGGTGA
Found at i:13190530 original size:43 final size:43
Alignment explanation
Indices: 13190412--13190533 Score: 174
Period size: 43 Copynumber: 2.8 Consensus size: 43
13190402 TGACTCGGCT
* **
13190412 ATGTGCGAGTAGGGAGTGCGCATAAGCCGAG-GATGACCCGGTT
1 ATGTGCGAGTAGGGAGTGCGCATAAGCCG-GTGATGACCCAGCC
*
13190455 ATGTGCGAGTAGGGAGTGCGCATAACCCGGTGATGACCCAGCC
1 ATGTGCGAGTAGGGAGTGCGCATAAGCCGGTGATGACCCAGCC
* *
13190498 ATGTGCGAGTAGGGAGTGCGCATGAGCTGGTGATGA
1 ATGTGCGAGTAGGGAGTGCGCATAAGCCGGTGATGA
13190534 TGATGATGAG
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
42 1 0.01
43 70 0.99
ACGTcount: A:0.23, C:0.19, G:0.39, T:0.19
Consensus pattern (43 bp):
ATGTGCGAGTAGGGAGTGCGCATAAGCCGGTGATGACCCAGCC
Found at i:13190544 original size:20 final size:19
Alignment explanation
Indices: 13190519--13190581 Score: 90
Period size: 20 Copynumber: 3.2 Consensus size: 19
13190509 GGGAGTGCGC
13190519 ATGAGCTGGTGATGATGATG
1 ATGAGCTGGTGA-GATGATG
13190539 ATGAGCTGGTGACGATGATG
1 ATGAGCTGGTGA-GATGATG
* *
13190559 ATGGGTTGGTGAGATGATG
1 ATGAGCTGGTGAGATGATG
13190578 ATGA
1 ATGA
13190582 TGGGTATATA
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
19 10 0.26
20 29 0.74
ACGTcount: A:0.25, C:0.05, G:0.41, T:0.29
Consensus pattern (19 bp):
ATGAGCTGGTGAGATGATG
Found at i:13193436 original size:76 final size:74
Alignment explanation
Indices: 13193329--13193489 Score: 223
Period size: 76 Copynumber: 2.1 Consensus size: 74
13193319 TAAATTTCCT
* * * * **
13193329 AAATTAAAATACTATCCTTAATTTTATGAATTTCTTTTAAAGTAGGAAATGATTTCCTATTTTTA
1 AAATTAAAATACTATCCTTAATTTTAGGAATTGCTTTTAAAGCAAGAAACAATTT--TATTTTTA
13193394 TGAATCACCCA
64 TGAATCACCCA
* *
13193405 AAATTAAAATTCTATCCTTAATTTTAGGAATTGCTTTTAAAGCAAGAAACAATTTTTTTTTTATG
1 AAATTAAAATACTATCCTTAATTTTAGGAATTGCTTTTAAAGCAAGAAACAATTTTATTTTTATG
*
13193470 AATTACCCA
66 AATCACCCA
13193479 AAATTAAAATA
1 AAATTAAAATA
13193490 GATGGTATTT
Statistics
Matches: 75, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
74 27 0.36
76 48 0.64
ACGTcount: A:0.40, C:0.12, G:0.07, T:0.41
Consensus pattern (74 bp):
AAATTAAAATACTATCCTTAATTTTAGGAATTGCTTTTAAAGCAAGAAACAATTTTATTTTTATG
AATCACCCA
Found at i:13196009 original size:42 final size:42
Alignment explanation
Indices: 13195941--13196077 Score: 175
Period size: 42 Copynumber: 3.3 Consensus size: 42
13195931 TTATGCGTAT
* * * * *
13195941 ATAGACGGATCAGCAACGGCTTATGTGCACTCCCACTCACAC
1 ATAGCCGGGTCAGCAATGGCTTATGTGCACTCCTACTCGCAC
* * *
13195983 ATAGCCGGGTCAGCAATGACTTATGTGCACTTCTACTTGCAC
1 ATAGCCGGGTCAGCAATGGCTTATGTGCACTCCTACTCGCAC
* *
13196025 ATAGCTGAGTCAGCAATGGCTTATGTGCACTCCTACTCGCAC
1 ATAGCCGGGTCAGCAATGGCTTATGTGCACTCCTACTCGCAC
*
13196067 ATAGTCGGGTC
1 ATAGCCGGGTC
13196078 CAAATCAACA
Statistics
Matches: 79, Mismatches: 16, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
42 79 1.00
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (42 bp):
ATAGCCGGGTCAGCAATGGCTTATGTGCACTCCTACTCGCAC
Found at i:13197659 original size:21 final size:20
Alignment explanation
Indices: 13197623--13197661 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
13197613 AAACATCATT
13197623 TTATACTCCAATAATTATAA
1 TTATACTCCAATAATTATAA
*
13197643 TTATATTCCATATAATTAT
1 TTATACTCCA-ATAATTAT
13197662 TCTTGGTCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.41, C:0.13, G:0.00, T:0.46
Consensus pattern (20 bp):
TTATACTCCAATAATTATAA
Found at i:13200004 original size:17 final size:17
Alignment explanation
Indices: 13199982--13200014 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
13199972 AAATGAGGAT
13199982 TGCTCCCCCTAAGTATA
1 TGCTCCCCCTAAGTATA
13199999 TGCTCCCCCTAAGTAT
1 TGCTCCCCCTAAGTAT
13200015 GTGCATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.21, C:0.36, G:0.12, T:0.30
Consensus pattern (17 bp):
TGCTCCCCCTAAGTATA
Found at i:13200276 original size:24 final size:24
Alignment explanation
Indices: 13200249--13200309 Score: 113
Period size: 24 Copynumber: 2.5 Consensus size: 24
13200239 TCTATTTACA
*
13200249 AACAGAAATCATTCATAATGCCAT
1 AACAAAAATCATTCATAATGCCAT
13200273 AACAAAAATCATTCATAATGCCAT
1 AACAAAAATCATTCATAATGCCAT
13200297 AACAAAAATCATT
1 AACAAAAATCATT
13200310 TATCAACATC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.51, C:0.20, G:0.05, T:0.25
Consensus pattern (24 bp):
AACAAAAATCATTCATAATGCCAT
Found at i:13207659 original size:43 final size:43
Alignment explanation
Indices: 13207597--13207720 Score: 151
Period size: 43 Copynumber: 2.9 Consensus size: 43
13207587 ATTGACTAGG
* **
13207597 CTATGTGCAAGTAGGGAGTGTGCATAAGCTGAG-GATGACCCGG
1 CTATGTGCGAGTAGGGAGTGTGCATAAGCTG-GTGATGACCCAA
* * *
13207640 TTATGTGCGAGTAGGGAGTGTGCATAACCCGGTGATGACCCAA
1 CTATGTGCGAGTAGGGAGTGTGCATAAGCTGGTGATGACCCAA
* * *
13207683 CCATGTGCGAGTAGGGAGTGCGCATGAGCTGGTGATGA
1 CTATGTGCGAGTAGGGAGTGTGCATAAGCTGGTGATGA
13207721 TGATGATGGG
Statistics
Matches: 68, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
42 1 0.01
43 67 0.99
ACGTcount: A:0.24, C:0.17, G:0.37, T:0.22
Consensus pattern (43 bp):
CTATGTGCGAGTAGGGAGTGTGCATAAGCTGGTGATGACCCAA
Found at i:13208156 original size:60 final size:60
Alignment explanation
Indices: 13208051--13208215 Score: 192
Period size: 60 Copynumber: 2.8 Consensus size: 60
13208041 GTAGCTTCTC
* * *
13208051 GCTGTAGCGA-AAAGGAATCTCGTTGTAGTGAAAAACTCTTC-GTTTCATCAGCT-GAATTTT
1 GCTGCAGCGAGAAA-GAATCTCGTTGTAGCGAAAAAC-CTTCTGTTTC-TCAGCTACAATTTT
* * ** *
13208111 GCTGCAGCGAGAAAGAATCTCGTTGCAGCGAGAAACCTTCTGTTTCTGGGTTACAATTTT
1 GCTGCAGCGAGAAAGAATCTCGTTGTAGCGAAAAACCTTCTGTTTCTCAGCTACAATTTT
* *
13208171 GCTGCAGTGAGAAAGAATCTCGCTGTAGCGAAAAACCTTCTGTTT
1 GCTGCAGCGAGAAAGAATCTCGTTGTAGCGAAAAACCTTCTGTTT
13208216 TGGTCTCCTA
Statistics
Matches: 90, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
59 7 0.08
60 80 0.89
61 3 0.03
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (60 bp):
GCTGCAGCGAGAAAGAATCTCGTTGTAGCGAAAAACCTTCTGTTTCTCAGCTACAATTTT
Found at i:13216823 original size:49 final size:49
Alignment explanation
Indices: 13216741--13216935 Score: 187
Period size: 49 Copynumber: 4.0 Consensus size: 49
13216731 ATTCCTCCAC
* * * * *
13216741 GGATGGAACATGCATA-ATCAGCATCATAGCATCGTCTAGAATCATCCAT
1 GGATGGAACATACATACCTCA-CATCATATCATCATCTAGAATCATCTAT
* * * * * * *
13216790 GGATAGAACATACATACCTCACATCGTATCATCGTTTGGAATCATTTAC
1 GGATGGAACATACATACCTCACATCATATCATCATCTAGAATCATCTAT
* *
13216839 GGATGGAACATACATACCTCACTTCATAACATCATCT-GTAATCATCTAT
1 GGATGGAACATACATACCTCACATCATATCATCATCTAG-AATCATCTAT
* * * * *
13216888 AGACGGAACATACATATCTCATATCATATCATCATCCAGAATCATCTA
1 GGATGGAACATACATACCTCACATCATATCATCATCTAGAATCATCTA
13216936 CAGACAGAAC
Statistics
Matches: 118, Mismatches: 25, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
48 1 0.01
49 113 0.96
50 4 0.03
ACGTcount: A:0.35, C:0.24, G:0.13, T:0.28
Consensus pattern (49 bp):
GGATGGAACATACATACCTCACATCATATCATCATCTAGAATCATCTAT
Found at i:13216882 original size:98 final size:98
Alignment explanation
Indices: 13216739--13216920 Score: 224
Period size: 98 Copynumber: 1.9 Consensus size: 98
13216729 GAATTCCTCC
* * * * *
13216739 ACGGATGGAACATGCATAATCAGCATCATAGCATCGTCTAGAATCATCCATGGATAGAACATACA
1 ACGGATGGAACATACATAATCAGCATCATAACATCATCTAGAATCATCCATAGACAGAACATACA
*
13216804 TACCTCACATCGTATCATCGTTTGGAATCATTT
66 TACCTCACATCATATCATCGTTTGGAATCATTT
* * * *
13216837 ACGGATGGAACATACATACCTCA-CTTCATAACATCATCT-GTAATCATCTATAGACGGAACATA
1 ACGGATGGAACATACATA-ATCAGCATCATAACATCATCTAG-AATCATCCATAGACAGAACATA
* *
13216900 CATATCTCATATCATATCATC
64 CATACCTCACATCATATCATC
13216921 ATCCAGAATC
Statistics
Matches: 70, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
97 1 0.01
98 66 0.94
99 3 0.04
ACGTcount: A:0.35, C:0.24, G:0.13, T:0.28
Consensus pattern (98 bp):
ACGGATGGAACATACATAATCAGCATCATAACATCATCTAGAATCATCCATAGACAGAACATACA
TACCTCACATCATATCATCGTTTGGAATCATTT
Found at i:13218885 original size:43 final size:43
Alignment explanation
Indices: 13218824--13218905 Score: 137
Period size: 43 Copynumber: 1.9 Consensus size: 43
13218814 TAGACTCGGC
* *
13218824 TATGTGCGAGTAGGGAGTGCACATAAGCCGATGATGACCTGGT
1 TATGTACGAGTAGGGAGTGCACATAAACCGATGATGACCTGGT
*
13218867 TATGTACGAGTAGGGAGTGCACATAAACCGGTGATGACC
1 TATGTACGAGTAGGGAGTGCACATAAACCGATGATGACC
13218906 CAACATGTGC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.28, C:0.17, G:0.33, T:0.22
Consensus pattern (43 bp):
TATGTACGAGTAGGGAGTGCACATAAACCGATGATGACCTGGT
Found at i:13218984 original size:22 final size:23
Alignment explanation
Indices: 13218942--13218994 Score: 99
Period size: 22 Copynumber: 2.3 Consensus size: 23
13218932 TGAGCTGGTC
13218942 ATGATGGGATGGTGTGCATGATG
1 ATGATGGGATGGTGTGCATGATG
13218965 ATGATGGGATGGT-TGCATGATG
1 ATGATGGGATGGTGTGCATGATG
13218987 ATGATGGG
1 ATGATGGG
13218995 TATATGTATA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
22 17 0.57
23 13 0.43
ACGTcount: A:0.23, C:0.04, G:0.43, T:0.30
Consensus pattern (23 bp):
ATGATGGGATGGTGTGCATGATG
Found at i:13225136 original size:68 final size:68
Alignment explanation
Indices: 13225028--13225283 Score: 413
Period size: 68 Copynumber: 3.8 Consensus size: 68
13225018 ATCTCATAAG
* * *
13225028 GTATATGGAATTTACATCATATACATAATCTCATGGCATTCTTCATTCTTTCTCAATCATCTCAT
1 GTATATGGAATATACATCATATACATAATCTAATGGCATTCTTCATGCTTTCTCAATCATCTCAT
13225093 GTA
66 GTA
* * *
13225096 GTATATGGAATATACATCATATACACAATTTAATGCCATTCTTCATGCTTTCTCAATCATCTCAT
1 GTATATGGAATATACATCATATACATAATCTAATGGCATTCTTCATGCTTTCTCAATCATCTCAT
13225161 GTA
66 GTA
* * *
13225164 GTATATGGAATAGACATCATATACATAATCTAATGGCATTCATCATGCTTTCTAAATCATCTCAT
1 GTATATGGAATATACATCATATACATAATCTAATGGCATTCTTCATGCTTTCTCAATCATCTCAT
13225229 GTA
66 GTA
* *
13225232 GTATATGTAATATACATCATATACATAATCTAATGGCATTCTTCATACTTTC
1 GTATATGGAATATACATCATATACATAATCTAATGGCATTCTTCATGCTTTC
13225284 ATGCATATTA
Statistics
Matches: 172, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
68 172 1.00
ACGTcount: A:0.33, C:0.19, G:0.09, T:0.39
Consensus pattern (68 bp):
GTATATGGAATATACATCATATACATAATCTAATGGCATTCTTCATGCTTTCTCAATCATCTCAT
GTA
Found at i:13230915 original size:93 final size:92
Alignment explanation
Indices: 13230684--13230961 Score: 339
Period size: 92 Copynumber: 3.0 Consensus size: 92
13230674 AAACTTATGG
* * ** * * *
13230684 TAGAATATGTAATAACTCAATCTCCCTTAAAATTTTATCTTTAGCTAGTTGATTTGCACCACTTT
1 TAGAATATGTAGTAACTCAATCTCTCTTAAAACCTTATCTTTAGCTAGCTGATATGTA-CACTTT
*
13230749 TCATTAGTTACATTTAACA-TTGAAAAA
65 ACATTAGTTACATTTAACACTTGAAAAA
* * *
13230776 TAAAATATGTAGTAACTCAATC-CATCTCAAAGCCCTT-TCTTTAGCTAGCTGATATGTATCACT
1 TAGAATATGTAGTAACTCAATCTC-TCTTAAA-ACCTTATCTTTAGCTAGCTGATATGTA-CACT
* *
13230839 TTGCATTAGCTACATTTAACACTTGAAAAA
63 TTACATTAGTTACATTTAACACTTGAAAAA
* ** *
13230869 TAGAATATGTAGTAACTTAATCTCTCTTAAAACCTTATCTTTAGCTAGCCAATATGTACCCTTTA
1 TAGAATATGTAGTAACTCAATCTCTCTTAAAACCTTATCTTTAGCTAGCTGATATGTACACTTTA
13230934 CATTAGTTACATTTAACAC-TGAAAAA
66 CATTAGTTACATTTAACACTTGAAAAA
13230960 TA
1 TA
13230962 ATATAGGAGT
Statistics
Matches: 159, Mismatches: 22, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
91 10 0.06
92 93 0.58
93 55 0.35
94 1 0.01
ACGTcount: A:0.35, C:0.18, G:0.09, T:0.37
Consensus pattern (92 bp):
TAGAATATGTAGTAACTCAATCTCTCTTAAAACCTTATCTTTAGCTAGCTGATATGTACACTTTA
CATTAGTTACATTTAACACTTGAAAAA
Found at i:13237335 original size:33 final size:35
Alignment explanation
Indices: 13237296--13237368 Score: 105
Period size: 33 Copynumber: 2.1 Consensus size: 35
13237286 ACCATTGTTG
* *
13237296 AAGGGTTTCGCTTGGTCTCGTGAA-AAGCT-TTGT
1 AAGGGTTTCGCTTGATCTCATGAACAAGCTATTGT
13237329 AAGGGTTTCGCTTGATCTCATGAACAAGCTATTGT
1 AAGGGTTTCGCTTGATCTCATGAACAAGCTATTGT
*
13237364 GAGGG
1 AAGGG
13237369 CTTTGTTTGA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
33 22 0.63
34 5 0.14
35 8 0.23
ACGTcount: A:0.22, C:0.15, G:0.30, T:0.33
Consensus pattern (35 bp):
AAGGGTTTCGCTTGATCTCATGAACAAGCTATTGT
Found at i:13239840 original size:37 final size:37
Alignment explanation
Indices: 13239790--13239911 Score: 165
Period size: 37 Copynumber: 3.3 Consensus size: 37
13239780 CATATACATA
* * *
13239790 CATCATCATCATGTGTGAACTCCCTCCTCGTACACTC
1 CATCATCATCATGTGTGCACTCCCTACTCGCACACTC
* *
13239827 CATCATCGTCATGTGTGCACTCCTTACTCGCACACTC
1 CATCATCATCATGTGTGCACTCCCTACTCGCACACTC
*
13239864 AATCATCATCATGTGTGCACTCCCTACTCGCACAC-C
1 CATCATCATCATGTGTGCACTCCCTACTCGCACACTC
*
13239900 TCAACATCATCA
1 -CATCATCATCA
13239912 CCCAACATCA
Statistics
Matches: 74, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
36 1 0.01
37 73 0.99
ACGTcount: A:0.24, C:0.38, G:0.11, T:0.28
Consensus pattern (37 bp):
CATCATCATCATGTGTGCACTCCCTACTCGCACACTC
Found at i:13264757 original size:43 final size:43
Alignment explanation
Indices: 13264690--13264813 Score: 162
Period size: 43 Copynumber: 2.9 Consensus size: 43
13264680 CACACTCCGT
* *
13264690 TCATGTGCACTCCCTA-CTCGCACATAGCTGGGTCATCATCAGC
1 TCATGTGCACTCCC-ACCTCACACATAGCTAGGTCATCATCAGC
*
13264733 TCATGTGCACTCCCACCTCACACATGGCTAGGTCATCATCAGC
1 TCATGTGCACTCCCACCTCACACATAGCTAGGTCATCATCAGC
* * * *
13264776 TCATGTGCACTCCCA-CACGCATATAACTAGGTCATCAT
1 TCATGTGCACTCCCACCTCACACATAGCTAGGTCATCAT
13264814 TATCACACAA
Statistics
Matches: 72, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
42 19 0.26
43 53 0.74
ACGTcount: A:0.24, C:0.35, G:0.16, T:0.25
Consensus pattern (43 bp):
TCATGTGCACTCCCACCTCACACATAGCTAGGTCATCATCAGC
Found at i:13268484 original size:18 final size:17
Alignment explanation
Indices: 13268452--13268485 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
13268442 ACCACACGTG
13268452 ACAATAATTGATTACTT
1 ACAATAATTGATTACTT
*
13268469 ACAATGAATTGCTTACT
1 ACAAT-AATTGATTACT
13268486 CATCTTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.38, C:0.15, G:0.09, T:0.38
Consensus pattern (17 bp):
ACAATAATTGATTACTT
Found at i:13275086 original size:35 final size:36
Alignment explanation
Indices: 13275047--13275120 Score: 98
Period size: 35 Copynumber: 2.1 Consensus size: 36
13275037 TGAGGTATTG
*
13275047 AGATCACAAAATCTT-TATACTTTGTGCTA-GTATCA
1 AGATCACAAAAT-TTCTATACTTTGTGCCAGGTATCA
* *
13275082 AGATCACCAAGTTTCTATACTTTGTGCCAGGTATCA
1 AGATCACAAAATTTCTATACTTTGTGCCAGGTATCA
13275118 AGA
1 AGA
13275121 CTTTTGAGCC
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
34 2 0.06
35 23 0.68
36 9 0.26
ACGTcount: A:0.32, C:0.19, G:0.15, T:0.34
Consensus pattern (36 bp):
AGATCACAAAATTTCTATACTTTGTGCCAGGTATCA
Found at i:13277242 original size:27 final size:27
Alignment explanation
Indices: 13277210--13277265 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
13277200 CTTCTTTTGA
13277210 TTGGGCCATGCCCATTTTTCTTTCTTG
1 TTGGGCCATGCCCATTTTTCTTTCTTG
*
13277237 TTGGGCCATGCCCGTTTTTCTTTCTTG
1 TTGGGCCATGCCCATTTTTCTTTCTTG
13277264 TT
1 TT
13277266 CTTTTCTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.05, C:0.25, G:0.20, T:0.50
Consensus pattern (27 bp):
TTGGGCCATGCCCATTTTTCTTTCTTG
Found at i:13277300 original size:4 final size:5
Alignment explanation
Indices: 13277252--13277297 Score: 62
Period size: 5 Copynumber: 9.6 Consensus size: 5
13277242 CCATGCCCGT
13277252 TTTTC -TTTC TTGTTC TTTTC TTTTC TTTTC TTTTC -TTTC -TTTC TTT
1 TTTTC TTTTC TT-TTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTT
13277298 CTTCCACCGT
Statistics
Matches: 38, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
4 12 0.32
5 21 0.55
6 5 0.13
ACGTcount: A:0.00, C:0.20, G:0.02, T:0.78
Consensus pattern (5 bp):
TTTTC
Found at i:13277500 original size:34 final size:35
Alignment explanation
Indices: 13277457--13277537 Score: 112
Period size: 34 Copynumber: 2.3 Consensus size: 35
13277447 TATTGGCTTC
*
13277457 AAAATCAGCAGCTAAGCTGCTCTA-TTTCTCCT-AA
1 AAAATCAGCAGCTAAGCTACTCTATTTTC-CCTCAA
* *
13277491 AAAACCAGCAACTAAGCTACTCTATTTTCCCTCAA
1 AAAATCAGCAGCTAAGCTACTCTATTTTCCCTCAA
13277526 AAAATCAGCAGC
1 AAAATCAGCAGC
13277538 CAAAACAACA
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
34 24 0.60
35 16 0.40
ACGTcount: A:0.37, C:0.28, G:0.10, T:0.25
Consensus pattern (35 bp):
AAAATCAGCAGCTAAGCTACTCTATTTTCCCTCAA
Found at i:13277691 original size:22 final size:22
Alignment explanation
Indices: 13277646--13277691 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
13277636 TATACTTTTC
* **
13277646 AGCCTCCAAAATCAACAGTTAA
1 AGCCTCAAAAATCAACAGCCAA
13277668 AGCCTCAAAAATCAACAGCCAA
1 AGCCTCAAAAATCAACAGCCAA
13277690 AG
1 AG
13277692 ATGCTCCTTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.48, C:0.28, G:0.11, T:0.13
Consensus pattern (22 bp):
AGCCTCAAAAATCAACAGCCAA
Found at i:13282757 original size:25 final size:24
Alignment explanation
Indices: 13282729--13282790 Score: 63
Period size: 25 Copynumber: 2.5 Consensus size: 24
13282719 CCATTTATTT
13282729 TTATTTCATATT-AGGCCATGCCCAC
1 TTATTTC-TATTGA-GCCATGCCCAC
* *
13282754 TTATTTTCTATTGAGTCATGCCCAT
1 TTA-TTTCTATTGAGCCATGCCCAC
13282779 TTATTTTCTATT
1 TTA-TTTCTATT
13282791 TATTTTCTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
25 28 0.85
26 5 0.15
ACGTcount: A:0.21, C:0.21, G:0.10, T:0.48
Consensus pattern (24 bp):
TTATTTCTATTGAGCCATGCCCAC
Found at i:13282907 original size:22 final size:22
Alignment explanation
Indices: 13282882--13282937 Score: 85
Period size: 22 Copynumber: 2.5 Consensus size: 22
13282872 TTCACCATTG
13282882 TGGCTTCCTCTCTTCACAACCA
1 TGGCTTCCTCTCTTCACAACCA
* * *
13282904 TGGCTTCCACTCTTCACCACCG
1 TGGCTTCCTCTCTTCACAACCA
13282926 TGGCTTCCTCTC
1 TGGCTTCCTCTC
13282938 AAAATCGATC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.12, C:0.43, G:0.12, T:0.32
Consensus pattern (22 bp):
TGGCTTCCTCTCTTCACAACCA
Found at i:13283119 original size:23 final size:23
Alignment explanation
Indices: 13283086--13283135 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
13283076 AAAATGGCAG
*
13283086 CAAACAACTCTAATTTTTCTGCA
1 CAAACAACTCTAATTTTTCTACA
*
13283109 CAAACAGCTCTAATTTTTCTACA
1 CAAACAACTCTAATTTTTCTACA
13283132 CAAA
1 CAAA
13283136 TTGGCATCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.38, C:0.26, G:0.04, T:0.32
Consensus pattern (23 bp):
CAAACAACTCTAATTTTTCTACA
Found at i:13283582 original size:17 final size:18
Alignment explanation
Indices: 13283560--13283604 Score: 65
Period size: 19 Copynumber: 2.5 Consensus size: 18
13283550 TACACTCTTC
13283560 TCTTTTGTTTTC-TTTAT
1 TCTTTTGTTTTCTTTTAT
13283577 TCTTTTGTCTTTCTTTTAT
1 TCTTTTGT-TTTCTTTTAT
*
13283596 TCCTTTGTT
1 TCTTTTGTT
13283605 CAACAGGCCA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
17 8 0.32
18 5 0.20
19 12 0.48
ACGTcount: A:0.04, C:0.16, G:0.07, T:0.73
Consensus pattern (18 bp):
TCTTTTGTTTTCTTTTAT
Found at i:13292462 original size:21 final size:22
Alignment explanation
Indices: 13292438--13292480 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
13292428 TTTAAAACAA
13292438 CTTTAAAACCAAA-ACTCTGAT
1 CTTTAAAACCAAATACTCTGAT
* *
13292459 CTTTAAAATCAAATTCTCTGAT
1 CTTTAAAACCAAATACTCTGAT
13292481 ACCACTAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.40, C:0.21, G:0.05, T:0.35
Consensus pattern (22 bp):
CTTTAAAACCAAATACTCTGAT
Found at i:13294577 original size:5 final size:5
Alignment explanation
Indices: 13294555--13294596 Score: 61
Period size: 5 Copynumber: 8.6 Consensus size: 5
13294545 CCATGCCCAT
13294555 TTTTC -TTTC TTGTTC TTTTC TTTTC TTTTC TTTTC -TTTC TTT
1 TTTTC TTTTC TT-TTC TTTTC TTTTC TTTTC TTTTC TTTTC TTT
13294597 ATTTCTTCCA
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
4 8 0.24
5 21 0.62
6 5 0.15
ACGTcount: A:0.00, C:0.19, G:0.02, T:0.79
Consensus pattern (5 bp):
TTTTC
Found at i:13294778 original size:33 final size:33
Alignment explanation
Indices: 13294740--13294819 Score: 92
Period size: 34 Copynumber: 2.4 Consensus size: 33
13294730 TCAGCAATCA
*
13294740 AAGCTGCTCATATTGGCT-TC-AAAATCAACAGCT
1 AAGCTGCTC-TATT-GCTCTCAAAAACCAACAGCT
* *
13294773 AAGCTGCTCTATTTCTCCTCAAAAACCAGCAGCT
1 AAGCTGCTCTATTGCT-CTCAAAAACCAACAGCT
13294807 AAGCTGCTCTATT
1 AAGCTGCTCTATT
13294820 TTCCCTCCAA
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
31 2 0.05
32 4 0.10
33 11 0.27
34 24 0.59
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (33 bp):
AAGCTGCTCTATTGCTCTCAAAAACCAACAGCT
Found at i:13294838 original size:35 final size:34
Alignment explanation
Indices: 13294760--13294840 Score: 119
Period size: 34 Copynumber: 2.4 Consensus size: 34
13294750 TATTGGCTTC
*
13294760 AAAATCAACAGCTAAGCTGCTCTATTTCTCCTCA
1 AAAATCAGCAGCTAAGCTGCTCTATTTCTCCTCA
*
13294794 AAAACCAGCAGCTAAGCTGCTCTATTT-TCCCTCCA
1 AAAATCAGCAGCTAAGCTGCTCTATTTCT-CCT-CA
13294829 AAAATCAGCAGC
1 AAAATCAGCAGC
13294841 CAAAACTACA
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
33 1 0.02
34 28 0.67
35 13 0.31
ACGTcount: A:0.33, C:0.31, G:0.11, T:0.25
Consensus pattern (34 bp):
AAAATCAGCAGCTAAGCTGCTCTATTTCTCCTCA
Found at i:13294994 original size:22 final size:22
Alignment explanation
Indices: 13294949--13294995 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
13294939 TGCACTTTTC
* **
13294949 AGCCTCCAAAATCAGCAGTTAA
1 AGCCTCAAAAATCAGCAGCCAA
13294971 AGCCTCAAAAATCAGCAGCCAA
1 AGCCTCAAAAATCAGCAGCCAA
13294993 AGC
1 AGC
13294996 TGCTCCTTCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.43, C:0.30, G:0.15, T:0.13
Consensus pattern (22 bp):
AGCCTCAAAAATCAGCAGCCAA
Found at i:13295393 original size:19 final size:20
Alignment explanation
Indices: 13295365--13295413 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
13295355 TTGGTCTATC
*
13295365 TTTATCTATA-TATATATT-T
1 TTTATATATACTAT-TATTAT
13295384 TTTATATATACTATTATTAT
1 TTTATATATACTATTATTAT
13295404 TTTACTATAT
1 TTTA-TATAT
13295414 GTTCATTTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
19 13 0.50
20 8 0.31
21 5 0.19
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (20 bp):
TTTATATATACTATTATTAT
Found at i:13295792 original size:19 final size:19
Alignment explanation
Indices: 13295753--13295793 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
13295743 TTAATATTTT
*
13295753 AATATTATTTTATTATTAA
1 AATATTATTTTATTATAAA
*
13295772 AATATTATTTTATTCTAAA
1 AATATTATTTTATTATAAA
13295791 AAT
1 AAT
13295794 TTCCTCTTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (19 bp):
AATATTATTTTATTATAAA
Found at i:13297103 original size:13 final size:13
Alignment explanation
Indices: 13297085--13297109 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
13297075 ATTGTCAAAA
13297085 ATTTTATAAAATT
1 ATTTTATAAAATT
13297098 ATTTTATAAAAT
1 ATTTTATAAAAT
13297110 CCCATTTTCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
ATTTTATAAAATT
Found at i:13299458 original size:2 final size:2
Alignment explanation
Indices: 13299451--13299485 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
13299441 CATAATAACT
13299451 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
13299486 TATATATATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:13299490 original size:2 final size:2
Alignment explanation
Indices: 13299485--13299523 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
13299475 ACACACACAC
* *
13299485 AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT AG AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
13299524 AATTTTGGCA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
AT
Found at i:13303375 original size:23 final size:23
Alignment explanation
Indices: 13303349--13303396 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
13303339 TCTAAAGTTG
13303349 AGTAAATGGAGACAACTTAAAAT
1 AGTAAATGGAGACAACTTAAAAT
13303372 AGTAAATGGAGACAACTTAAAAT
1 AGTAAATGGAGACAACTTAAAAT
13303395 AG
1 AG
13303397 CTCATCATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.52, C:0.08, G:0.19, T:0.21
Consensus pattern (23 bp):
AGTAAATGGAGACAACTTAAAAT
Found at i:13306118 original size:21 final size:20
Alignment explanation
Indices: 13306092--13306130 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
13306082 CAGAGACGAC
13306092 TTAATCAACTAAGAAGCATGG
1 TTAATCAACTAAG-AGCATGG
*
13306113 TTAATCGACTAAGAGCAT
1 TTAATCAACTAAGAGCAT
13306131 TTTGTTTGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.41, C:0.15, G:0.18, T:0.26
Consensus pattern (20 bp):
TTAATCAACTAAGAGCATGG
Found at i:13307651 original size:19 final size:18
Alignment explanation
Indices: 13307604--13307656 Score: 63
Period size: 19 Copynumber: 2.8 Consensus size: 18
13307594 AGCTGGAGCT
*
13307604 GAAAGAAGAAAAAGAAAAA
1 GAAAGAAG-AAAAGCAAAA
13307623 GACAAG-AGAAAAGCAAAA
1 GA-AAGAAGAAAAGCAAAA
13307641 GAAAGGAAGAAAAGCA
1 GAAA-GAAGAAAAGCA
13307657 TTGCCTTAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
17 2 0.07
18 12 0.40
19 13 0.43
20 3 0.10
ACGTcount: A:0.70, C:0.06, G:0.25, T:0.00
Consensus pattern (18 bp):
GAAAGAAGAAAAGCAAAA
Found at i:13308671 original size:16 final size:16
Alignment explanation
Indices: 13308650--13308682 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
13308640 TGAAGGAGAA
13308650 GCAACCATGGTACATG
1 GCAACCATGGTACATG
13308666 GCAACCATGGTACATG
1 GCAACCATGGTACATG
13308682 G
1 G
13308683 ATAATGGCAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.30, C:0.24, G:0.27, T:0.18
Consensus pattern (16 bp):
GCAACCATGGTACATG
Found at i:13314119 original size:18 final size:18
Alignment explanation
Indices: 13314096--13314131 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
13314086 GGAGAAATAT
13314096 GATAGAAAGCT-TAAGGGA
1 GATAGAAAG-TATAAGGGA
13314114 GATAGAAAGTATAAGGGA
1 GATAGAAAGTATAAGGGA
13314132 TTTAAGGGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 1 0.06
18 16 0.94
ACGTcount: A:0.47, C:0.03, G:0.33, T:0.17
Consensus pattern (18 bp):
GATAGAAAGTATAAGGGA
Found at i:13316975 original size:54 final size:56
Alignment explanation
Indices: 13316916--13317080 Score: 154
Period size: 54 Copynumber: 3.1 Consensus size: 56
13316906 TGGCCTTCCT
* *
13316916 TTTCTCCCTTCTCTTCCCTCCGGCCTTC-CT-TCTCTCATTTCCTTTCCTTTCTTC
1 TTTCTCCCTTCTCTTCCCTCCGGCCTTCATTCTCTCTCCTTTCCTTTCCTTTCTTC
*
13316970 TTTCT--C-TC-C-TCCCGT-CAGCCTTCATTCTCTCTCCTTTCCTTTCCTTTCTTC
1 TTTCTCCCTTCTCTTCCC-TCCGGCCTTCATTCTCTCTCCTTTCCTTTCCTTTCTTC
* * * * * *
13317021 --TATCCCTTAT-TCTCCCACTGGCTTTCTTTCTCTCTCCTTTCCTTTCCTTTCTTC
1 TTTCTCCCTTCTCT-TCCCTCCGGCCTTCATTCTCTCTCCTTTCCTTTCCTTTCTTC
13317075 TTTCTC
1 TTTCTC
13317081 TCCTCCCGCC
Statistics
Matches: 88, Mismatches: 11, Indels: 22
0.73 0.09 0.18
Matches are distributed among these distances:
49 13 0.15
50 3 0.03
51 26 0.30
52 2 0.02
54 41 0.47
56 3 0.03
ACGTcount: A:0.04, C:0.42, G:0.04, T:0.51
Consensus pattern (56 bp):
TTTCTCCCTTCTCTTCCCTCCGGCCTTCATTCTCTCTCCTTTCCTTTCCTTTCTTC
Found at i:13317010 original size:51 final size:52
Alignment explanation
Indices: 13316946--13317088 Score: 173
Period size: 54 Copynumber: 2.7 Consensus size: 52
13316936 CGGCCTTCCT
* *
13316946 TCTCTCATTTCCTTTCCTTTCTTCTTTCTCTCCTCCCGTC-AGCCTTCATTC
1 TCTCTCCTTTCCTTTCCTTTCTTCTTTCTCTCCTCCCGACTAGCCTTCATTC
* * * * * *
13316997 TCTCTCCTTTCCTTTCCTTTCTTCTATCCCTTATTCTCCC-ACTGGCTTTCTTTC
1 TCTCTCCTTTCCTTTCCTTTCTTCT-T-TC-TCTCCTCCCGACTAGCCTTCATTC
13317051 TCTCTCCTTTCCTTTCCTTTCTTCTTTCTCTCCTCCCG
1 TCTCTCCTTTCCTTTCCTTTCTTCTTTCTCTCCTCCCG
13317089 CCGACCTTTC
Statistics
Matches: 76, Mismatches: 11, Indels: 9
0.79 0.11 0.09
Matches are distributed among these distances:
51 31 0.41
52 2 0.03
53 3 0.04
54 40 0.53
ACGTcount: A:0.04, C:0.41, G:0.03, T:0.51
Consensus pattern (52 bp):
TCTCTCCTTTCCTTTCCTTTCTTCTTTCTCTCCTCCCGACTAGCCTTCATTC
Found at i:13317205 original size:14 final size:14
Alignment explanation
Indices: 13317176--13317242 Score: 59
Period size: 14 Copynumber: 4.8 Consensus size: 14
13317166 GTCACGCTCC
*
13317176 TCTTCTTCTCTTCTT
1 TCTTTTTCT-TTCTT
*
13317191 TTTTTTTCTTTCTT
1 TCTTTTTCTTTCTT
13317205 TCTTTTTCTTT-TT
1 TCTTTTTCTTTCTT
*
13317218 TC-TTCTCTCTTC-T
1 TCTTTTTCT-TTCTT
13317231 TCTTCTTTCTTT
1 TCTT-TTTCTTT
13317243 GGCTAACACT
Statistics
Matches: 43, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
12 5 0.12
13 9 0.21
14 18 0.42
15 11 0.26
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (14 bp):
TCTTTTTCTTTCTT
Found at i:13317223 original size:10 final size:10
Alignment explanation
Indices: 13317176--13317241 Score: 53
Period size: 10 Copynumber: 6.4 Consensus size: 10
13317166 GTCACGCTCC
*
13317176 TCTTCTTCTCT
1 TCTTCTT-TTT
*
13317187 TCTTTTTTTT
1 TCTTCTTTTT
13317197 TCTTTCTTTCTT
1 TC-TTCTTT-TT
13317209 T-TTCTTTTT
1 TCTTCTTTTT
* *
13317218 TCTTCTCTCT
1 TCTTCTTTTT
*
13317228 TCTTCTTCTT
1 TCTTCTTTTT
13317238 TCTT
1 TCTT
13317242 TGGCTAACAC
Statistics
Matches: 44, Mismatches: 8, Indels: 7
0.75 0.14 0.12
Matches are distributed among these distances:
9 3 0.07
10 27 0.61
11 11 0.25
12 3 0.07
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (10 bp):
TCTTCTTTTT
Found at i:13317446 original size:16 final size:15
Alignment explanation
Indices: 13317400--13317451 Score: 52
Period size: 16 Copynumber: 3.3 Consensus size: 15
13317390 ATATATACAT
13317400 TTTTA-TATTCATTTA
1 TTTTATTATT-ATTTA
* *
13317415 CTATTATTATTTTTTA
1 -TTTTATTATTATTTA
13317431 TTTTATTAATTATTTA
1 TTTTATT-ATTATTTA
13317447 TTTTA
1 TTTTA
13317452 CTTCCTCAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
15 6 0.20
16 20 0.67
17 4 0.13
ACGTcount: A:0.27, C:0.04, G:0.00, T:0.69
Consensus pattern (15 bp):
TTTTATTATTATTTA
Found at i:13317831 original size:19 final size:18
Alignment explanation
Indices: 13317809--13317851 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 18
13317799 TTAATATTTT
13317809 AATATTATTTTATTCATAA
1 AATATTATTTTATTC-TAA
*
13317828 AATAATATTTTATTCTAA
1 AATATTATTTTATTCTAA
13317846 AATATT
1 AATATT
13317852 CTTCTCACCT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 8 0.36
19 14 0.64
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (18 bp):
AATATTATTTTATTCTAA
Found at i:13321123 original size:25 final size:25
Alignment explanation
Indices: 13321095--13321142 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
13321085 AATTTCTTCC
* *
13321095 TATTGGGCCATGCCCATTCTTTTCT
1 TATTAGGCCATGCCCACTCTTTTCT
13321120 TATTAGGCCATGCCCACTCTTTT
1 TATTAGGCCATGCCCACTCTTTT
13321143 TTTTTTTTCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.15, C:0.29, G:0.15, T:0.42
Consensus pattern (25 bp):
TATTAGGCCATGCCCACTCTTTTCT
Found at i:13321231 original size:49 final size:52
Alignment explanation
Indices: 13321153--13321266 Score: 155
Period size: 51 Copynumber: 2.2 Consensus size: 52
13321143 TTTTTTTTCT
*
13321153 TTTCATTTC-TTTCTTCTTCCTCTTCTCCTCCCGCCGGCCTTCCTTC-TCTCC
1 TTTCCTTTCTTTTCTTCTT-CTCTTCTCCTCCCGCCGGCCTTCCTTCTTCTCC
* *
13321204 TTTCCTTTCTTTTCTTCTT-TC-TCTCCTCCCGCTGGCCTTCTTTCTTTCTCC
1 TTTCCTTTCTTTTCTTCTTCTCTTCTCCTCCCGCCGGCCTTCCTTC-TTCTCC
13321255 TTTCCTTTCTTT
1 TTTCCTTTCTTT
13321267 CCCTTTCTTT
Statistics
Matches: 57, Mismatches: 3, Indels: 6
0.86 0.05 0.09
Matches are distributed among these distances:
49 21 0.37
50 2 0.04
51 25 0.44
52 9 0.16
ACGTcount: A:0.01, C:0.40, G:0.05, T:0.54
Consensus pattern (52 bp):
TTTCCTTTCTTTTCTTCTTCTCTTCTCCTCCCGCCGGCCTTCCTTCTTCTCC
Found at i:13321273 original size:15 final size:16
Alignment explanation
Indices: 13321243--13321280 Score: 60
Period size: 15 Copynumber: 2.4 Consensus size: 16
13321233 CGCTGGCCTT
13321243 CTTTCTTTCTCCTTTC
1 CTTTCTTTCTCCTTTC
13321259 CTTTCTTTC-CCTTTC
1 CTTTCTTTCTCCTTTC
*
13321274 TTTTCTT
1 CTTTCTT
13321281 CTTTCCCTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 12 0.57
16 9 0.43
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (16 bp):
CTTTCTTTCTCCTTTC
Found at i:13321273 original size:49 final size:49
Alignment explanation
Indices: 13321176--13321274 Score: 139
Period size: 49 Copynumber: 2.0 Consensus size: 49
13321166 TTCTTCCTCT
*
13321176 TCTCCTCCCGCCGGCCTTCCTTCTCTCCTTTCCTTTCTTTTCTTCTTTC
1 TCTCCTCCCGCCGGCCTTCCTTCTCTCCTTTCCTTTCTTTTCTCCTTTC
* *
13321225 TCTCCTCCCGCTGGCCTTCTTTCTTTCTCCTTTCCTTTC-TTTC-CCTTTC
1 TCTCCTCCCGCCGGCCTTCCTTC--TCTCCTTTCCTTTCTTTTCTCCTTTC
13321274 T
1 T
13321275 TTTCTTCTTT
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
49 27 0.60
50 4 0.09
51 14 0.31
ACGTcount: A:0.00, C:0.43, G:0.06, T:0.51
Consensus pattern (49 bp):
TCTCCTCCCGCCGGCCTTCCTTCTCTCCTTTCCTTTCTTTTCTCCTTTC
Found at i:13321306 original size:64 final size:60
Alignment explanation
Indices: 13321203--13321327 Score: 146
Period size: 64 Copynumber: 2.0 Consensus size: 60
13321193 TCCTTCTCTC
* * *
13321203 CTTTCCTTTCTTTTCTTCTTTCTCTCCTCCCGCTGGCCTTC-TTTCTTTCTCCTTTCCTTT
1 CTTTCCTTTCTTTTCTTCTTTCTCTCCTCCCGCTAGCCTTCATTT-TCTCTCATTTCCTTT
*
13321263 CTTTCCCTTTCTTTTCTTCTTTCCCTTCTCCTCCC-ATCAGCCTTCATTTTCTCTCATTTCCTTT
1 CTTT-CCTTTCTTTTCTTCTTT--C-TCTCCTCCCGCT-AGCCTTCATTTTCTCTCATTTCCTTT
13321327 C
1 C
13321328 CCTTCTTCTT
Statistics
Matches: 55, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
60 4 0.07
61 17 0.31
63 2 0.04
64 29 0.53
65 3 0.05
ACGTcount: A:0.03, C:0.39, G:0.03, T:0.54
Consensus pattern (60 bp):
CTTTCCTTTCTTTTCTTCTTTCTCTCCTCCCGCTAGCCTTCATTTTCTCTCATTTCCTTT
Found at i:13321479 original size:10 final size:10
Alignment explanation
Indices: 13321440--13321497 Score: 50
Period size: 10 Copynumber: 5.8 Consensus size: 10
13321430 CACACTCCTT
13321440 TTCTTCTCTTC
1 TTCTTCT-TTC
*
13321451 TT-TT-TTTT
1 TTCTTCTTTC
*
13321459 TTCCTTTTTTC
1 TT-CTTCTTTC
13321470 TTCTTCTTTC
1 TTCTTCTTTC
13321480 TTC-TCTCTTC
1 TTCTTCT-TTC
13321490 TTCTTCTT
1 TTCTTCTT
13321498 ATTTCTTTGG
Statistics
Matches: 39, Mismatches: 3, Indels: 11
0.74 0.06 0.21
Matches are distributed among these distances:
8 4 0.10
9 4 0.10
10 21 0.54
11 10 0.26
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (10 bp):
TTCTTCTTTC
Found at i:13322086 original size:19 final size:18
Alignment explanation
Indices: 13322064--13322106 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 18
13322054 TTAATATTTT
13322064 AATATTATTTTATTCATAA
1 AATATTATTTTATTC-TAA
*
13322083 AATAATATTTTATTCTAA
1 AATATTATTTTATTCTAA
13322101 AATATT
1 AATATT
13322107 CTTCTCACTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 8 0.36
19 14 0.64
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (18 bp):
AATATTATTTTATTCTAA
Found at i:13322637 original size:73 final size:73
Alignment explanation
Indices: 13322541--13322751 Score: 341
Period size: 73 Copynumber: 2.9 Consensus size: 73
13322531 TCAAAAGTGA
*
13322541 AGAAACTAGGTTCAAAGACAGAGACGACTTAATCGACTAAGAAGCATAGTTAGTCGACTAAGAGC
1 AGAAACTAGGTTCAGAGACAGAGACGACTTAATCGACTAAGAAGCATAGTTAGTCGACTAAGAGC
*
13322606 TTACTGCT
66 TTACTGCC
* * *
13322614 AGAAACCAGGTTCAGAGATAGAGACGACTTAATCGACTAAGAAGCATAGTTAGTCGATTAAGAGC
1 AGAAACTAGGTTCAGAGACAGAGACGACTTAATCGACTAAGAAGCATAGTTAGTCGACTAAGAGC
*
13322679 TTATTGCC
66 TTACTGCC
* * *
13322687 AAAAACTAGGTTTAGAGACAGAGACGACTTAATCGACTAAGAAGCACAGTTAGTCGACTAAGAGC
1 AGAAACTAGGTTCAGAGACAGAGACGACTTAATCGACTAAGAAGCATAGTTAGTCGACTAAGAGC
13322752 ATTCTGTTTG
Statistics
Matches: 126, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
73 126 1.00
ACGTcount: A:0.39, C:0.17, G:0.23, T:0.21
Consensus pattern (73 bp):
AGAAACTAGGTTCAGAGACAGAGACGACTTAATCGACTAAGAAGCATAGTTAGTCGACTAAGAGC
TTACTGCC
Found at i:13324931 original size:23 final size:23
Alignment explanation
Indices: 13324901--13324945 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
13324891 TTTTGATATG
13324901 ACAAAACTAATGAGCAAAATTTA
1 ACAAAACTAATGAGCAAAATTTA
*
13324924 ACAAAACTAATGAGTAAAATTT
1 ACAAAACTAATGAGCAAAATTT
13324946 GTTTGTAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.56, C:0.11, G:0.09, T:0.24
Consensus pattern (23 bp):
ACAAAACTAATGAGCAAAATTTA
Found at i:13326519 original size:28 final size:28
Alignment explanation
Indices: 13326468--13326599 Score: 120
Period size: 28 Copynumber: 4.5 Consensus size: 28
13326458 TCTTGTCTTT
*
13326468 AATTAAGACGAAACATATTATCTTATCTA
1 AATTAAGAC-AAACATATTTTCTTATCTA
* * * * *
13326497 AATTGAGACTAACATCTTTTCTTGTATA
1 AATTAAGACAAACATATTTTCTTATCTA
* * *
13326525 GATTAAGAGAAAACATATTTTTCTTCTCTTA
1 AATTAAGA-CAAACATA-TTTTCTTATC-TA
* *
13326556 AATTAAGACAAACATGTTTTCTTACCTA
1 AATTAAGACAAACATATTTTCTTATCTA
13326584 AATTAAGACAATACAT
1 AATTAAGACAA-ACAT
13326600 GTAAAAGCTA
Statistics
Matches: 81, Mismatches: 18, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
28 33 0.41
29 25 0.31
30 14 0.17
31 9 0.11
ACGTcount: A:0.40, C:0.14, G:0.08, T:0.37
Consensus pattern (28 bp):
AATTAAGACAAACATATTTTCTTATCTA
Found at i:13326576 original size:59 final size:57
Alignment explanation
Indices: 13326469--13326578 Score: 141
Period size: 59 Copynumber: 1.9 Consensus size: 57
13326459 CTTGTCTTTA
* *
13326469 ATTAAGACGAAACATATTATCTTATCTAAATTGAGACTAACATCTTTTCTTGTATAG
1 ATTAAGACGAAACATATTATCTTATCTAAATTAAGACAAACATCTTTTCTTGTATAG
* * *
13326526 ATTAAGA-GAAAACATATTTTTCTTCTCTTAAATTAAGACAAACATGTTTTCTT
1 ATTAAGACG-AAACATA-TTATCTTATC-TAAATTAAGACAAACATCTTTTCTT
13326579 ACCTAAATTA
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
56 1 0.02
57 14 0.31
58 8 0.18
59 22 0.49
ACGTcount: A:0.37, C:0.14, G:0.09, T:0.40
Consensus pattern (57 bp):
ATTAAGACGAAACATATTATCTTATCTAAATTAAGACAAACATCTTTTCTTGTATAG
Done.