Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26303135
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.30
Warning! 1968672 characters in sequence are not A, C, G, or T
File 39 of 66
Found at i:13728009 original size:77 final size:75
Alignment explanation
Indices: 13727773--13728083 Score: 260
Period size: 75 Copynumber: 4.3 Consensus size: 75
13727763 TCAACTCAGC
* * *
13727773 TCATGTGCACTACCACACCGCACATAGCTAATATC--C-TCATGTGCACT-CTCACACCGCACA-
1 TCATGTGCACTCCCACACCGCACATGGCAAATATCATCATCATGTGCACTAC-CACACCGCACAC
* * **
13727833 TAGCA--AATA
65 CACCATCACCA
* * * *
13727842 TCATGTGGACTCCCACACCGCACATGGC--A-A--AT-ATCATGTGCACTCCCACACAGCACA-T
1 TCATGTGCACTCCCACACCGCACATGGCAAATATCATCATCATGTGCACTACCACACCGCACACC
** *
13727900 GGCAT-A-TA
66 ACCATCACCA
* *
13727908 TCATGGGCACTCCCACACCTCACATGGCATATATCATCATCATCATGTGCACTACCACACCGCAC
1 TCATGTGCACTCCCACACCGCACATGGCA-A-AT-ATCATCATCATGTGCACTACCACACCGCAC
*
13727973 ACCA-CATCCCCA
63 ACCACCATCACCA
* *
13727985 TCATGTGCACTCCCACACCGCACATGGCAAATATCATCATCGTGTGCACTCCCACACCGCACACC
1 TCATGTGCACTCCCACACCGCACATGGCAAATATCATCATCATGTGCACTACCACACCGCACACC
* *
13728050 ACCATCATCG
66 ACCATCACCA
* *
13728060 TTATGTGCACTCCTACACCGCACA
1 TCATGTGCACTCCCACACCGCACA
13728084 CGCACGGTTA
Statistics
Matches: 201, Mismatches: 23, Indels: 30
0.79 0.09 0.12
Matches are distributed among these distances:
66 53 0.26
67 3 0.01
69 25 0.12
70 1 0.00
72 1 0.00
74 34 0.17
75 55 0.27
76 1 0.00
77 28 0.14
ACGTcount: A:0.29, C:0.38, G:0.13, T:0.20
Consensus pattern (75 bp):
TCATGTGCACTCCCACACCGCACATGGCAAATATCATCATCATGTGCACTACCACACCGCACACC
ACCATCACCA
Found at i:13728056 original size:110 final size:104
Alignment explanation
Indices: 13727773--13728084 Score: 259
Period size: 110 Copynumber: 2.9 Consensus size: 104
13727763 TCAACTCAGC
* * * *
13727773 TCATGTGCACTACCACACCGCACATAGCTAATATC--C-TCATGTGCACTCTCACACCGCACA-T
1 TCATGTGCACTCCCACACCGCACATGGC-AATATCATCATCGTGTGCACTCCCACACCGCACACT
* * * *
13727834 AGCA-AAT-ATCATGTGGACTCCCACACCGCACATGGCAAATA
65 ACCATCATCATCATGTGCACT-CCACACCGCACA--CCAAATA
* *
13727875 TCATGTGCACTCCCACACAGCACATGGC-ATAT-ATCAT-G-G-GCACTCCCACACCTCACATGG
1 TCATGTGCACTCCCACACCGCACATGGCAATATCATCATCGTGTGCACTCCCACACCGCACA---
* *
13727935 CATATATCATCATCATCATGTGCACTACCACACCGCACACCACATCCCCA
63 C---TACCATCATCATCATGTGCACT-CCACACCGCACACCAAAT----A
*
13727985 TCATGTGCACTCCCACACCGCACATGGCAAATATCATCATCGTGTGCACTCCCACACCGCACACC
1 TCATGTGCACTCCCACACCGCACATGGC-AATATCATCATCGTGTGCACTCCCACACCGCACACT
* *
13728050 ACCATCATCGTTATGTGCACTCCTACACCGCACAC
65 ACCATCATCATCATGTGCACTCC-ACACCGCACAC
13728085 GCACGGTTAT
Statistics
Matches: 169, Mismatches: 18, Indels: 38
0.75 0.08 0.17
Matches are distributed among these distances:
99 16 0.09
100 5 0.03
101 1 0.01
102 26 0.15
106 8 0.05
107 2 0.01
108 23 0.14
109 2 0.01
110 57 0.34
112 4 0.02
113 6 0.04
114 1 0.01
115 1 0.01
116 17 0.10
ACGTcount: A:0.29, C:0.38, G:0.13, T:0.20
Consensus pattern (104 bp):
TCATGTGCACTCCCACACCGCACATGGCAATATCATCATCGTGTGCACTCCCACACCGCACACTA
CCATCATCATCATGTGCACTCCACACCGCACACCAAATA
Found at i:13729970 original size:67 final size:66
Alignment explanation
Indices: 13729777--13729955 Score: 225
Period size: 67 Copynumber: 2.7 Consensus size: 66
13729767 AAGTTGGTTG
* **
13729777 TTGGGTTTTGGTTGATCCCG-GTAAAACCATTGTTCTAGGTTGTGGTTGAGCCTTGGAAAAACCA
1 TTGGGTTTTGGTTGATCCCGTGAAAAACCATTG-TAAAGGTTGTGGTTGAGCCTTGGAAAAACCA
13729841 CT
65 CT
* * * * * * * *
13729843 TTGGGTTTTAGTTTAGCCCATGAAAAACTAGTGTAAAATGTTGTGGTTGAGCCTTTGAAAAACCA
1 TTGGGTTTTGGTTGATCCCGTGAAAAACCATTGT-AAAGGTTGTGGTTGAGCCTTGGAAAAACCA
13729908 CT
65 CT
13729910 TTGGGTTTTGGTTGATCCCGTGAAAAACCATTGCTAAAGGTTGTGG
1 TTGGGTTTTGGTTGATCCCGTGAAAAACCATTG-TAAAGGTTGTGG
13729956 CTAAGCTTGC
Statistics
Matches: 92, Mismatches: 18, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
66 17 0.18
67 74 0.80
68 1 0.01
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.35
Consensus pattern (66 bp):
TTGGGTTTTGGTTGATCCCGTGAAAAACCATTGTAAAGGTTGTGGTTGAGCCTTGGAAAAACCAC
T
Found at i:13736511 original size:20 final size:20
Alignment explanation
Indices: 13736486--13736524 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
13736476 TAATGAAAGT
* *
13736486 TTGATGATGATTGATAATAC
1 TTGATGATAATTGACAATAC
13736506 TTGATGATAATTGACAATA
1 TTGATGATAATTGACAATA
13736525 GTTGTCATGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.05, G:0.18, T:0.38
Consensus pattern (20 bp):
TTGATGATAATTGACAATAC
Found at i:13748696 original size:36 final size:36
Alignment explanation
Indices: 13748656--13748832 Score: 133
Period size: 36 Copynumber: 4.7 Consensus size: 36
13748646 CTCAACTCAG
* *
13748656 CTCATGTGCACTCCCACACCGCATATAGCTAATATC
1 CTCATGTGCACTCCCACACCGCACATAGCAAATATC
*
13748692 CTCATGTGCACTCCCACACCGCACATGGCAAATATC
1 CTCATGTGCACTCCCACACCGCACATAGCAAATATC
** * * **
13748728 ATCATCATCGTGTGCACTCCCACATTGCAC--ACCACATCCC
1 --C-TCA---TGTGCACTCCCACACCGCACATAGCAAATATC
* * *
13748768 CATCATGTGCACTCCGACACTGCACATGGCAAATATC
1 C-TCATGTGCACTCCCACACCGCACATAGCAAATATC
*
13748805 ATCATTGTGTGCACTCCCACACCGCACA
1 CTCA---TGTGCACTCCCACACCGCACA
13748833 CCATCATCAC
Statistics
Matches: 110, Mismatches: 20, Indels: 19
0.74 0.13 0.13
Matches are distributed among these distances:
35 18 0.16
36 36 0.33
37 5 0.05
38 6 0.05
39 22 0.20
40 5 0.05
42 18 0.16
ACGTcount: A:0.27, C:0.38, G:0.13, T:0.22
Consensus pattern (36 bp):
CTCATGTGCACTCCCACACCGCACATAGCAAATATC
Found at i:13748758 original size:42 final size:42
Alignment explanation
Indices: 13748696--13748832 Score: 132
Period size: 35 Copynumber: 3.5 Consensus size: 42
13748686 AATATCCTCA
*
13748696 TGTGCACTCCCACACCGCACATGGCAAATATCATCATCATCG
1 TGTGCACTCCCACACTGCACATGGCAAATATCATCATCATCG
* * ** *
13748738 TGTGCACTCCCACATTGCACA---C---CA-CATCCCCATCA
1 TGTGCACTCCCACACTGCACATGGCAAATATCATCATCATCG
*
13748773 TGTGCACTCCGACACTGCACATGGCAAATATCATCAT--T-G
1 TGTGCACTCCCACACTGCACATGGCAAATATCATCATCATCG
*
13748812 TGTGCACTCCCACACCGCACA
1 TGTGCACTCCCACACTGCACA
13748833 CCATCATCAC
Statistics
Matches: 74, Mismatches: 14, Indels: 17
0.70 0.13 0.16
Matches are distributed among these distances:
35 27 0.36
36 1 0.01
38 1 0.01
39 20 0.27
40 1 0.01
41 1 0.01
42 23 0.31
ACGTcount: A:0.27, C:0.38, G:0.14, T:0.21
Consensus pattern (42 bp):
TGTGCACTCCCACACTGCACATGGCAAATATCATCATCATCG
Found at i:13748777 original size:35 final size:35
Alignment explanation
Indices: 13748727--13748862 Score: 121
Period size: 35 Copynumber: 3.7 Consensus size: 35
13748717 TGGCAAATAT
* * *
13748727 CATCATCATCGTGTGCACTCCCACATTGCACACCA
1 CATCACCATCATGTGCACTCCCACACTGCACACCA
* * *
13748762 CATCCCCATCATGTGCACTCCGACACTGCACATGGCA
1 CATCACCATCATGTGCACTCCCACACTGCACA--CCA
* * *
13748799 AAT-ATCATCATTGTGTGCACTCCCACACCGCACACCA
1 CATCACCATCA---TGTGCACTCCCACACTGCACACCA
*
13748836 TCATCACCGTCATGTGCACTCCCACAC
1 -CATCACCATCATGTGCACTCCCACAC
13748863 CACACACGCA
Statistics
Matches: 79, Mismatches: 15, Indels: 13
0.74 0.14 0.12
Matches are distributed among these distances:
35 27 0.34
36 20 0.25
37 6 0.08
38 2 0.03
39 24 0.30
ACGTcount: A:0.26, C:0.40, G:0.12, T:0.21
Consensus pattern (35 bp):
CATCACCATCATGTGCACTCCCACACTGCACACCA
Found at i:13748793 original size:77 final size:75
Alignment explanation
Indices: 13748693--13748868 Score: 255
Period size: 77 Copynumber: 2.3 Consensus size: 75
13748683 GCTAATATCC
**
13748693 TCATGTGCACTCCCACACCGCACATGGCAAATATCATCATCATCGTGTGCACTCCCACATTGCAC
1 TCATGTGCACTCCCACACCGCACATGGCAAATATCATCAT--T-GTGTGCACTCCCACACCGCAC
*
13748758 ACCA-CATCCCCA
63 ACCATCATCACCA
* *
13748770 TCATGTGCACTCCGACACTGCACATGGCAAATATCATCATTGTGTGCACTCCCACACCGCACACC
1 TCATGTGCACTCCCACACCGCACATGGCAAATATCATCATTGTGTGCACTCCCACACCGCACACC
*
13748835 ATCATCACCG
66 ATCATCACCA
*
13748845 TCATGTGCACTCCCACACCACACA
1 TCATGTGCACTCCCACACCGCACA
13748869 CGCACGGTTA
Statistics
Matches: 89, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
74 23 0.26
75 28 0.31
77 38 0.43
ACGTcount: A:0.27, C:0.40, G:0.12, T:0.20
Consensus pattern (75 bp):
TCATGTGCACTCCCACACCGCACATGGCAAATATCATCATTGTGTGCACTCCCACACCGCACACC
ATCATCACCA
Found at i:13752549 original size:7 final size:7
Alignment explanation
Indices: 13752537--13752587 Score: 61
Period size: 7 Copynumber: 7.4 Consensus size: 7
13752527 AACTTAAAAT
13752537 AAAGAAA
1 AAAGAAA
13752544 AAAG-AA
1 AAAGAAA
*
13752550 AATGAAGA
1 AAAGAA-A
13752558 AAAGAAA
1 AAAGAAA
13752565 AAAGAAA
1 AAAGAAA
*
13752572 AAA-AGA
1 AAAGAAA
13752578 AAAGAAA
1 AAAGAAA
13752585 AAA
1 AAA
13752588 TGTTATACTC
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
6 10 0.27
7 21 0.57
8 6 0.16
ACGTcount: A:0.82, C:0.00, G:0.16, T:0.02
Consensus pattern (7 bp):
AAAGAAA
Found at i:13752562 original size:14 final size:14
Alignment explanation
Indices: 13752537--13752587 Score: 61
Period size: 13 Copynumber: 3.7 Consensus size: 14
13752527 AACTTAAAAT
13752537 AAAG-AAAAAAGAA
1 AAAGAAAAAAAGAA
* *
13752550 AATGAAGAAAAGAAA
1 AAAGAAAAAAAG-AA
13752565 AAAGAAAAAAAG-A
1 AAAGAAAAAAAGAA
13752578 AAAGAAAAAA
1 AAAGAAAAAA
13752588 TGTTATACTC
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
13 14 0.44
14 6 0.19
15 12 0.38
ACGTcount: A:0.82, C:0.00, G:0.16, T:0.02
Consensus pattern (14 bp):
AAAGAAAAAAAGAA
Found at i:13752577 original size:20 final size:21
Alignment explanation
Indices: 13752537--13752587 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
13752527 AACTTAAAAT
*
13752537 AAAGAAAAAAGAAAATGAAGA
1 AAAGAAAAAAGAAAATAAAGA
13752558 AAAGAAAAAAGAAAA-AAAGA
1 AAAGAAAAAAGAAAATAAAGA
13752578 AAAGAAAAAA
1 AAAGAAAAAA
13752588 TGTTATACTC
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
20 14 0.48
21 15 0.52
ACGTcount: A:0.82, C:0.00, G:0.16, T:0.02
Consensus pattern (21 bp):
AAAGAAAAAAGAAAATAAAGA
Found at i:13759644 original size:20 final size:21
Alignment explanation
Indices: 13759599--13759645 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
13759589 AGATGTCTAA
*
13759599 AATAATTATTTGAAATGAAAT
1 AATAATTATTTGAAATAAAAT
* *
13759620 TATAATTGTTTG-AATAAAAT
1 AATAATTATTTGAAATAAAAT
13759640 AATAAT
1 AATAAT
13759646 ATTCAATAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
20 12 0.55
21 10 0.45
ACGTcount: A:0.51, C:0.00, G:0.09, T:0.40
Consensus pattern (21 bp):
AATAATTATTTGAAATAAAAT
Found at i:13761194 original size:10 final size:10
Alignment explanation
Indices: 13761176--13761214 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
13761166 AACCTCACCA
13761176 ATCATCAAAT
1 ATCATCAAAT
*
13761186 ATCACCAAAAT
1 ATCATC-AAAT
*
13761197 ATCATGAAAT
1 ATCATCAAAT
13761207 ATCATCAA
1 ATCATCAA
13761215 TTTCAGCCTC
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
10 16 0.67
11 8 0.33
ACGTcount: A:0.51, C:0.21, G:0.03, T:0.26
Consensus pattern (10 bp):
ATCATCAAAT
Found at i:13763613 original size:28 final size:28
Alignment explanation
Indices: 13763522--13763694 Score: 143
Period size: 29 Copynumber: 6.0 Consensus size: 28
13763512 TGGCAGCTTT
* *
13763522 AACATGTTTATCTTAATTTAGACAAGAA
1 AACATATTTGTCTTAATTTAGACAAGAA
* *
13763550 AACATGTCTGGTCTTAATTTAGACAAGAA
1 AACATAT-TTGTCTTAATTTAGACAAGAA
* *
13763579 AATATATTTGTTTTAATTTAAGACAAGAA
1 AACATATTTGTCTTAATTT-AGACAAGAA
* * *
13763608 AA-ATATTTTTTATTTAATATAGACAAGAA
1 AACATA-TTTGT-CTTAATTTAGACAAGAA
* * *
13763637 AACATATTTGTCTCAATTTGGAAAAGATA
1 AACATATTTGTCTTAATTTAGACAAGA-A
*
13763666 AA-ATATTTTTGTCTTAATTGAAGACAAGA
1 AACATA--TTTGTCTTAATT-TAGACAAGA
13763695 GTTGTTTTAA
Statistics
Matches: 118, Mismatches: 18, Indels: 15
0.78 0.12 0.10
Matches are distributed among these distances:
28 34 0.29
29 57 0.48
30 21 0.18
31 6 0.05
ACGTcount: A:0.43, C:0.08, G:0.12, T:0.37
Consensus pattern (28 bp):
AACATATTTGTCTTAATTTAGACAAGAA
Found at i:13763855 original size:17 final size:17
Alignment explanation
Indices: 13763833--13763865 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
13763823 ATAATAATAA
13763833 AATAA-GAGTTATTATTC
1 AATAAGGAGTT-TTATTC
13763850 AATAAGGAGTTTTATT
1 AATAAGGAGTTTTATT
13763866 TTATCAAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.39, C:0.03, G:0.15, T:0.42
Consensus pattern (17 bp):
AATAAGGAGTTTTATTC
Found at i:13768559 original size:3 final size:3
Alignment explanation
Indices: 13768551--13768577 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
13768541 CTAGGATGGA
13768551 TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT
13768578 CTATATGAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:13769383 original size:16 final size:16
Alignment explanation
Indices: 13769362--13769402 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
13769352 GGACCAACAC
* * *
13769362 CCCAAAAGTGGTAAGT
1 CCCAAAAGCGATAAAT
13769378 CCCAAAAGCGATAAAT
1 CCCAAAAGCGATAAAT
13769394 CCCAAAAGC
1 CCCAAAAGC
13769403 AGTAGACCCC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.44, C:0.27, G:0.17, T:0.12
Consensus pattern (16 bp):
CCCAAAAGCGATAAAT
Found at i:13770691 original size:18 final size:18
Alignment explanation
Indices: 13770664--13770702 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
13770654 ACACGATTAA
13770664 TAACACGTTTAACACAAT
1 TAACACGTTTAACACAAT
* *
13770682 TAACATGTTTAACACGAT
1 TAACACGTTTAACACAAT
13770700 TAA
1 TAA
13770703 ATAAAAATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.44, C:0.18, G:0.08, T:0.31
Consensus pattern (18 bp):
TAACACGTTTAACACAAT
Found at i:13779438 original size:18 final size:18
Alignment explanation
Indices: 13779415--13779452 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
13779405 GCCAGGAGCA
13779415 ATATAATTTCATCTAATC
1 ATATAATTTCATCTAATC
13779433 ATATAATTTCATCTAATC
1 ATATAATTTCATCTAATC
13779451 AT
1 AT
13779453 TTGAATTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.39, C:0.16, G:0.00, T:0.45
Consensus pattern (18 bp):
ATATAATTTCATCTAATC
Found at i:13793730 original size:32 final size:29
Alignment explanation
Indices: 13793694--13793768 Score: 91
Period size: 30 Copynumber: 2.6 Consensus size: 29
13793684 TCAAAAAATT
*
13793694 TTAAATAAATTTTTATTTTTTATTACATTCAA
1 TTAAATAAATTTTTATTTTTTATT---TTAAA
*
13793726 TTAAAT--ATTTATATTTTTTATTTTAAA
1 TTAAATAAATTTTTATTTTTTATTTTAAA
13793753 TTAAATAAATTTTTAT
1 TTAAATAAATTTTTAT
13793769 AATTATTAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
27 10 0.26
29 7 0.18
30 15 0.39
32 6 0.16
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.59
Consensus pattern (29 bp):
TTAAATAAATTTTTATTTTTTATTTTAAA
Found at i:13794856 original size:7 final size:7
Alignment explanation
Indices: 13794846--13794870 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
13794836 ATATGAGTCA
13794846 CCCCCAC
1 CCCCCAC
13794853 CCCCCAC
1 CCCCCAC
13794860 CCCCCAC
1 CCCCCAC
13794867 CCCC
1 CCCC
13794871 TTTCCCTCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.88, G:0.00, T:0.00
Consensus pattern (7 bp):
CCCCCAC
Found at i:13797537 original size:16 final size:17
Alignment explanation
Indices: 13797506--13797538 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
13797496 TGTACTTTTA
13797506 TTTAAAATTAAATAATT
1 TTTAAAATTAAATAATT
*
13797523 TTTATAATT-AATAATT
1 TTTAAAATTAAATAATT
13797539 AATTAATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (17 bp):
TTTAAAATTAAATAATT
Found at i:13804861 original size:27 final size:27
Alignment explanation
Indices: 13804831--13804889 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
13804821 ATAGGAAAAG
* * *
13804831 AATAGAATTCCTATCATTATGCTAATT
1 AATAAAATCCCTATAATTATGCTAATT
*
13804858 AATAAAATCCCTATAATTGTGCTAATT
1 AATAAAATCCCTATAATTATGCTAATT
*
13804885 CATAA
1 AATAA
13804890 TTCCTGTAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.41, C:0.15, G:0.07, T:0.37
Consensus pattern (27 bp):
AATAAAATCCCTATAATTATGCTAATT
Found at i:13805504 original size:2 final size:2
Alignment explanation
Indices: 13805497--13805522 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
13805487 TTAAGAGGTT
13805497 AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG
13805523 GTGTTAGGGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:13805942 original size:20 final size:20
Alignment explanation
Indices: 13805886--13805933 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
13805876 ATCCTGCCAA
13805886 GGATATATTAATACATTAGG
1 GGATATATTAATACATTAGG
13805906 GGATATATTAATACATTAGG
1 GGATATATTAATACATTAGG
13805926 GGATATAT
1 GGATATAT
13805934 CGATACATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.40, C:0.04, G:0.21, T:0.35
Consensus pattern (20 bp):
GGATATATTAATACATTAGG
Found at i:13823419 original size:27 final size:27
Alignment explanation
Indices: 13823389--13823455 Score: 64
Period size: 27 Copynumber: 2.5 Consensus size: 27
13823379 AGCACTCAGT
13823389 GTGTTCTAAGTGCAAAAGAGCCCAAGG
1 GTGTTCTAAGTGCAAAAGAGCCCAAGG
* ** * *
13823416 GTGTT-TCAAGCGCGGAAGCGTCCAAGG
1 GTGTTCT-AAGTGCAAAAGAGCCCAAGG
*
13823443 GCGTTCTAAGTGC
1 GTGTTCTAAGTGC
13823456 GGAAGTGCCT
Statistics
Matches: 31, Mismatches: 7, Indels: 4
0.74 0.17 0.10
Matches are distributed among these distances:
26 1 0.03
27 29 0.94
28 1 0.03
ACGTcount: A:0.25, C:0.21, G:0.33, T:0.21
Consensus pattern (27 bp):
GTGTTCTAAGTGCAAAAGAGCCCAAGG
Found at i:13823433 original size:53 final size:53
Alignment explanation
Indices: 13823391--13823495 Score: 131
Period size: 53 Copynumber: 2.0 Consensus size: 53
13823381 CACTCAGTGT
*
13823391 GTTCTAAGTGCAAAAGAGCCCAAGGGTGTTTCAAGCGCGGAAGCGTCCAAGGGC
1 GTTCTAAGTGCAAAAGAG-CCAAGGGTGTTTCAAGCGCGGAAGCCTCCAAGGGC
** * * *
13823445 GTTCTAAGTGCGGAAGTGCCTAGGGTGTTTCAAGTGCGGAAGCGC-CCAAGG
1 GTTCTAAGTGCAAAAGAGCCAAGGGTGTTTCAAGCGCGGAAGC-CTCCAAGG
13823496 TGTTCCAAAT
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
53 29 0.66
54 15 0.34
ACGTcount: A:0.25, C:0.21, G:0.35, T:0.19
Consensus pattern (53 bp):
GTTCTAAGTGCAAAAGAGCCAAGGGTGTTTCAAGCGCGGAAGCCTCCAAGGGC
Found at i:13823457 original size:27 final size:27
Alignment explanation
Indices: 13823408--13823518 Score: 120
Period size: 26 Copynumber: 4.2 Consensus size: 27
13823398 GTGCAAAAGA
*
13823408 GCCCAAGGGTGTTTCAAGCGCGGAAGC
1 GCCCAAGGGTGTTTCAAGTGCGGAAGC
* * *
13823435 GTCCAAGGGCG-TTCTAAGTGCGGAAGT
1 GCCCAAGGGTGTTTC-AAGTGCGGAAGC
*
13823462 G-CCTAGGGTGTTTCAAGTGCGGAAGC
1 GCCCAAGGGTGTTTCAAGTGCGGAAGC
* * *
13823488 GCCCAA-GGTGTTCCAAATGCAGAAGC
1 GCCCAAGGGTGTTTCAAGTGCGGAAGC
13823514 GCCCA
1 GCCCA
13823519 GGGGCAATCC
Statistics
Matches: 70, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
26 44 0.63
27 26 0.37
ACGTcount: A:0.23, C:0.24, G:0.34, T:0.18
Consensus pattern (27 bp):
GCCCAAGGGTGTTTCAAGTGCGGAAGC
Found at i:13829319 original size:19 final size:20
Alignment explanation
Indices: 13829295--13829339 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
13829285 AACCAATAGT
*
13829295 GACACCGGGGCATTGT-AAA
1 GACACCGAGGCATTGTGAAA
* *
13829314 GACACCTAGGCGTTGTGAAA
1 GACACCGAGGCATTGTGAAA
13829334 GACACC
1 GACACC
13829340 AATCGTGGCG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 13 0.59
20 9 0.41
ACGTcount: A:0.31, C:0.24, G:0.29, T:0.16
Consensus pattern (20 bp):
GACACCGAGGCATTGTGAAA
Found at i:13829394 original size:40 final size:40
Alignment explanation
Indices: 13829336--13829414 Score: 140
Period size: 40 Copynumber: 2.0 Consensus size: 40
13829326 TTGTGAAAGA
*
13829336 CACCAATCGTGGCGAGGTTGAAAACCCCACTAAGGTGAAT
1 CACCAATCGTGGCAAGGTTGAAAACCCCACTAAGGTGAAT
*
13829376 CACCAATCTTGGCAAGGTTGAAAACCCCACTAAGGTGAA
1 CACCAATCGTGGCAAGGTTGAAAACCCCACTAAGGTGAA
13829415 AAATAGCCAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.34, C:0.25, G:0.23, T:0.18
Consensus pattern (40 bp):
CACCAATCGTGGCAAGGTTGAAAACCCCACTAAGGTGAAT
Found at i:13829779 original size:67 final size:65
Alignment explanation
Indices: 13829699--13829830 Score: 228
Period size: 67 Copynumber: 2.0 Consensus size: 65
13829689 TATCCTAATC
*
13829699 AAATACTAATTCTTAAAAGTATTAAAATAAAAATAAGAAAAGAATCCTAATCTAAATAAAATAAA
1 AAATACTAATTCTTAAAAGTATTAAAATAAAAATAAGAAAAGAATCCTAATATAAATAAAATAAA
*
13829764 NAAATACTAAATTCTTAAAAGTATTAAAATAAAAATAAGAAAAGAATGCTAATATAAATAAAATA
1 -AAATACT-AATTCTTAAAAGTATTAAAATAAAAATAAGAAAAGAATCCTAATATAAATAAAATA
13829829 AA
64 AA
13829831 GAAAATAAAT
Statistics
Matches: 63, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
66 7 0.11
67 56 0.89
ACGTcount: A:0.62, C:0.06, G:0.05, T:0.26
Consensus pattern (65 bp):
AAATACTAATTCTTAAAAGTATTAAAATAAAAATAAGAAAAGAATCCTAATATAAATAAAATAAA
Found at i:13829865 original size:67 final size:67
Alignment explanation
Indices: 13829699--13829855 Score: 160
Period size: 67 Copynumber: 2.4 Consensus size: 67
13829689 TATCCTAATC
* ** * * *
13829699 AAATACT-AATTCTTAAAAGTATTAAAATAAAAATAAGAAAAGAATCCTAATCTAAATAAAATAA
1 AAATACTAAATTCCTAAAACAACTAAAACAAAAATAAGAAAAGAATCCTAATATAAATAAAATAA
*
13829763 AN
66 AG
* ** * * *
13829765 AAATACTAAATTCTTAAAAGTATTAAAATAAAAATAAGAAAAGAATGCTAATATAAATAAAATAA
1 AAATACTAAATTCCTAAAACAACTAAAACAAAAATAAGAAAAGAATCCTAATATAAATAAAATAA
13829830 AG
66 AG
*
13829832 AAA-A-TAAA-TCCTAAATCAACTAAA
1 AAATACTAAATTCCTAAAACAACTAAA
13829856 TTAGCAAAAA
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
64 11 0.13
65 4 0.05
66 8 0.10
67 59 0.72
ACGTcount: A:0.62, C:0.08, G:0.05, T:0.25
Consensus pattern (67 bp):
AAATACTAAATTCCTAAAACAACTAAAACAAAAATAAGAAAAGAATCCTAATATAAATAAAATAA
AG
Found at i:13831260 original size:19 final size:20
Alignment explanation
Indices: 13831236--13831280 Score: 74
Period size: 19 Copynumber: 2.3 Consensus size: 20
13831226 ATACCAAACT
13831236 GACACCGGGGCATTGT-AAA
1 GACACCGGGGCATTGTGAAA
*
13831255 GACACCTGGGCATTGTGAAA
1 GACACCGGGGCATTGTGAAA
13831275 GACACC
1 GACACC
13831281 AATCGTGGCG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 15 0.62
20 9 0.38
ACGTcount: A:0.31, C:0.24, G:0.29, T:0.16
Consensus pattern (20 bp):
GACACCGGGGCATTGTGAAA
Found at i:13831335 original size:40 final size:40
Alignment explanation
Indices: 13831277--13831355 Score: 131
Period size: 40 Copynumber: 2.0 Consensus size: 40
13831267 TTGTGAAAGA
* *
13831277 CACCAATCGTGGCGAGGTTGAAAACCCCACTAAGGTGAAT
1 CACCAATCGTGGCAAGGTTGAAAACCCCACTAAAGTGAAT
*
13831317 CACCAATCTTGGCAAGGTTGAAAACCCCACTAAAGTGAA
1 CACCAATCGTGGCAAGGTTGAAAACCCCACTAAAGTGAA
13831356 AAATAGCCAA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.35, C:0.25, G:0.22, T:0.18
Consensus pattern (40 bp):
CACCAATCGTGGCAAGGTTGAAAACCCCACTAAAGTGAAT
Found at i:13833133 original size:2 final size:2
Alignment explanation
Indices: 13833126--13833164 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
13833116 TCTATAACAT
13833126 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
13833165 NNNNNNNNNN
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:13838466 original size:4 final size:4
Alignment explanation
Indices: 13838457--13838494 Score: 76
Period size: 4 Copynumber: 9.5 Consensus size: 4
13838447 TCTGTATGCT
13838457 AATA AATA AATA AATA AATA AATA AATA AATA AATA AA
1 AATA AATA AATA AATA AATA AATA AATA AATA AATA AA
13838495 GATATATGTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 34 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AATA
Found at i:13840482 original size:26 final size:26
Alignment explanation
Indices: 13840446--13840642 Score: 96
Period size: 26 Copynumber: 7.5 Consensus size: 26
13840436 ATTACATCAG
*
13840446 GGGTGTCCCAAGCGTGGAAGCACTC-A
1 GGGTGTTCCAAGCGTGGAAGCAC-CAA
* *
13840472 GGGTGTTCCAAGCACAT-AAACGC-CCAA
1 GGGTGTTCCAAG--CGTGGAA-GCACCAA
* * *
13840499 AGGCGTTCAAAGCGTGGAAGCACCAA
1 GGGTGTTCCAAGCGTGGAAGCACCAA
* * *
13840525 GAGGTGTTCCAAACGTGAAAGCACCTA
1 G-GGTGTTCCAAGCGTGGAAGCACCAA
*** ** *
13840552 GGGTGTTCCAAGAACGGAAGTGCCTA
1 GGGTGTTCCAAGCGTGGAAGCACCAA
* *
13840578 GGGTGTTCAAAGCGTGGAATAGC-CCAG
1 GGGTGTTCCAAGCGTGG-A-AGCACCAA
** * * *
13840605 GGGCATTCCAAGCGTAGAAGCGCCTA
1 GGGTGTTCCAAGCGTGGAAGCACCAA
*
13840631 GGGTGTTTCAAG
1 GGGTGTTCCAAG
13840643 TACAGAAGCG
Statistics
Matches: 124, Mismatches: 37, Indels: 20
0.69 0.20 0.11
Matches are distributed among these distances:
25 7 0.06
26 61 0.49
27 50 0.40
28 6 0.05
ACGTcount: A:0.28, C:0.23, G:0.31, T:0.17
Consensus pattern (26 bp):
GGGTGTTCCAAGCGTGGAAGCACCAA
Found at i:13840649 original size:26 final size:26
Alignment explanation
Indices: 13840620--13840682 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
13840610 TTCCAAGCGT
* *
13840620 AGAAGCGCCTAGGGTGTTTCAAGTAC
1 AGAAGCGCCTAGGGTGTTCCAAATAC
* *
13840646 AGAAGCGCCCAGGGTGTTCCAAATGC
1 AGAAGCGCCTAGGGTGTTCCAAATAC
*
13840672 AGAAGTGCCTA
1 AGAAGCGCCTA
13840683 AAGGCATTCC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.29, C:0.22, G:0.30, T:0.19
Consensus pattern (26 bp):
AGAAGCGCCTAGGGTGTTCCAAATAC
Found at i:13848449 original size:55 final size:55
Alignment explanation
Indices: 13848354--13848515 Score: 225
Period size: 55 Copynumber: 2.9 Consensus size: 55
13848344 ATGTATACAG
* * * * *
13848354 CCACCGGCTCATCAACTCATGTTCACTCCCACGCCGCACATAGCTGGAATCATTAT
1 CCACCGG-TCATCAGCTCATGTGCACTCCCACACCACACATAGCTGGAATCATCAT
* * *
13848410 CCACCGGTCATCAGCTCATGTGCACTCTCACACCACACATAGTTAGAATCATCAT
1 CCACCGGTCATCAGCTCATGTGCACTCCCACACCACACATAGCTGGAATCATCAT
* *
13848465 CCACCGGTCACCAGCTCATGTGCACTCCCACACCACACATTGCTGGAATCA
1 CCACCGGTCATCAGCTCATGTGCACTCCCACACCACACATAGCTGGAATCA
13848516 CCTGTCATCA
Statistics
Matches: 93, Mismatches: 13, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
55 86 0.92
56 7 0.08
ACGTcount: A:0.27, C:0.38, G:0.14, T:0.22
Consensus pattern (55 bp):
CCACCGGTCATCAGCTCATGTGCACTCCCACACCACACATAGCTGGAATCATCAT
Found at i:13848601 original size:22 final size:22
Alignment explanation
Indices: 13848576--13848617 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
13848566 ATATCACACA
*
13848576 ATAT-TATCATTCAAAGTATAAC
1 ATATATATCA-TCAAAATATAAC
13848598 ATATATATCATCAAAATATA
1 ATATATATCATCAAAATATA
13848618 GGAACACATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.50, C:0.12, G:0.02, T:0.36
Consensus pattern (22 bp):
ATATATATCATCAAAATATAAC
Found at i:13856523 original size:2 final size:2
Alignment explanation
Indices: 13856516--13856553 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
13856506 TTTGGCATTG
*
13856516 AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
13856554 GACCAAATCA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:13859900 original size:40 final size:40
Alignment explanation
Indices: 13859845--13859925 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
13859835 GTAGTTATGG
13859845 TAAGGTGTAGTCTGCTTTCCTCTGTTTGTATTGTAATGTT
1 TAAGGTGTAGTCTGCTTTCCTCTGTTTGTATTGTAATGTT
*
13859885 TAAGGTGTTGTCTGCTTTCCTCTGTTTGTATTGTAATGTT
1 TAAGGTGTAGTCTGCTTTCCTCTGTTTGTATTGTAATGTT
13859925 T
1 T
13859926 TTGCTGTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.14, C:0.12, G:0.22, T:0.52
Consensus pattern (40 bp):
TAAGGTGTAGTCTGCTTTCCTCTGTTTGTATTGTAATGTT
Found at i:13866006 original size:30 final size:30
Alignment explanation
Indices: 13865970--13866046 Score: 88
Period size: 30 Copynumber: 2.6 Consensus size: 30
13865960 TTTAATTAAT
*
13865970 TATAAAAATTTATTTAATTTTAAATA-AAAA
1 TATAAAAATTTATTTAATTGT-AATAGAAAA
* *
13866000 TATAAAAACTTAATTGAA-TGTAATAGAAAA
1 TATAAAAA-TTTATTTAATTGTAATAGAAAA
13866030 -ATAAAAATTTATTTAAT
1 TATAAAAATTTATTTAAT
13866047 AATTAAAAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
28 7 0.18
29 11 0.28
30 14 0.36
31 7 0.18
ACGTcount: A:0.56, C:0.01, G:0.04, T:0.39
Consensus pattern (30 bp):
TATAAAAATTTATTTAATTGTAATAGAAAA
Found at i:13875329 original size:2 final size:2
Alignment explanation
Indices: 13875322--13875364 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
13875312 TATAATGTTG
13875322 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
13875364 A
1 A
13875365 NNNNNNNNNN
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:13880410 original size:43 final size:43
Alignment explanation
Indices: 13880357--13880467 Score: 150
Period size: 43 Copynumber: 2.6 Consensus size: 43
13880347 ATTGACTCGA
* ** * *
13880357 CTATGTGCGAGTAGGGAGTGTGCATAAGTCGATGATGACTTGG
1 CTATGTGCGAGTAGGGAGTGCGCATAACCCGATGATGACCTAG
* *
13880400 TTATGTGCGAGTAGGGAGTGCGCATAACCCGGTGATGACCTAG
1 CTATGTGCGAGTAGGGAGTGCGCATAACCCGATGATGACCTAG
*
13880443 CCATGTGCGAGTAGGGAGTGCGCAT
1 CTATGTGCGAGTAGGGAGTGCGCAT
13880468 GAGTTGGGGA
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.23, C:0.16, G:0.37, T:0.24
Consensus pattern (43 bp):
CTATGTGCGAGTAGGGAGTGCGCATAACCCGATGATGACCTAG
Found at i:13880508 original size:23 final size:23
Alignment explanation
Indices: 13880476--13880524 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
13880466 ATGAGTTGGG
*
13880476 GATGATGGGATGATGTGCATGAT
1 GATGACGGGATGATGTGCATGAT
* *
13880499 GATGACGGGATGGTGTTCATGAT
1 GATGACGGGATGATGTGCATGAT
13880522 GAT
1 GAT
13880525 TGATATATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.24, C:0.06, G:0.39, T:0.31
Consensus pattern (23 bp):
GATGACGGGATGATGTGCATGAT
Found at i:13887764 original size:71 final size:71
Alignment explanation
Indices: 13887640--13887780 Score: 219
Period size: 71 Copynumber: 2.0 Consensus size: 71
13887630 TATCTGATTA
*
13887640 AGTAATCTACCATATTGATGACTCTCCTAATTTTGCTACAACGTATACCTGACTATGTATACATG
1 AGTAATCTACCATATTGATAACTCTCCTAATTTTGCTACAACGTATACCTGACTATGTATACATG
13887705 ATGACC
66 ATGACC
* * * * *
13887711 AGTACTCTACCATATTGATAACTCTCCTAATTTTGCTACAATGTTTACTTGACTATGTGTACATG
1 AGTAATCTACCATATTGATAACTCTCCTAATTTTGCTACAACGTATACCTGACTATGTATACATG
*
13887776 TTGAC
66 ATGAC
13887781 AAGGTTTTTC
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
71 63 1.00
ACGTcount: A:0.29, C:0.21, G:0.13, T:0.37
Consensus pattern (71 bp):
AGTAATCTACCATATTGATAACTCTCCTAATTTTGCTACAACGTATACCTGACTATGTATACATG
ATGACC
Found at i:13889170 original size:19 final size:19
Alignment explanation
Indices: 13889146--13889209 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
13889136 TGCCCGTGTG
13889146 CACGATGTGGGGGGATGTA
1 CACGATGTGGGGGGATGTA
**** *
13889165 CACGATG-GCACTGATTGTG
1 CACGATGTGGGGGGA-TGTA
*
13889184 CACGATGTGGGGGGATGCA
1 CACGATGTGGGGGGATGTA
13889203 CACGATG
1 CACGATG
13889210 ACTCCTGCTA
Statistics
Matches: 32, Mismatches: 11, Indels: 4
0.68 0.23 0.09
Matches are distributed among these distances:
18 3 0.09
19 26 0.81
20 3 0.09
ACGTcount: A:0.22, C:0.17, G:0.41, T:0.20
Consensus pattern (19 bp):
CACGATGTGGGGGGATGTA
Found at i:13889184 original size:38 final size:40
Alignment explanation
Indices: 13889142--13889244 Score: 156
Period size: 38 Copynumber: 2.6 Consensus size: 40
13889132 ATAGTGCCCG
* *
13889142 TGTGCACGATGTGGGGGGATGTACACGATGGC-ACTGAT-
1 TGTGCACGATGTGGGGGGATGCACACGATGACTACTGATA
* *
13889180 TGTGCACGATGTGGGGGGATGCACACGATGACTCCTGCTA
1 TGTGCACGATGTGGGGGGATGCACACGATGACTACTGATA
13889220 TGTGCACGATGTGGGGGGATGCACA
1 TGTGCACGATGTGGGGGGATGCACA
13889245 TGAGCTGGAT
Statistics
Matches: 59, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
38 30 0.51
39 4 0.07
40 25 0.42
ACGTcount: A:0.20, C:0.18, G:0.39, T:0.22
Consensus pattern (40 bp):
TGTGCACGATGTGGGGGGATGCACACGATGACTACTGATA
Found at i:13891870 original size:9 final size:9
Alignment explanation
Indices: 13891856--13891887 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
13891846 TATTGAATCA
13891856 TGTTAAACG
1 TGTTAAACG
*
13891865 TGTTAATCG
1 TGTTAAACG
13891874 TGTTAAACG
1 TGTTAAACG
13891883 TGTTA
1 TGTTA
13891888 TTAATCTTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.28, C:0.09, G:0.22, T:0.41
Consensus pattern (9 bp):
TGTTAAACG
Found at i:13891877 original size:18 final size:18
Alignment explanation
Indices: 13891851--13891887 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
13891841 ATTTTTATTG
13891851 AATCATGTTAAACGTGTT
1 AATCATGTTAAACGTGTT
*
13891869 AATCGTGTTAAACGTGTT
1 AATCATGTTAAACGTGTT
13891887 A
1 A
13891888 TTAATCTTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.38
Consensus pattern (18 bp):
AATCATGTTAAACGTGTT
Found at i:13892409 original size:25 final size:25
Alignment explanation
Indices: 13892381--13892431 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 25
13892371 TCATGGACCA
*
13892381 ACAATCTCCT-TCCTCCTCCACCACC
1 ACAA-CTCCTCTCCTCCTCCAACACC
13892406 ACAACTCCTCTCCTCCTCCAACACC
1 ACAACTCCTCTCCTCCTCCAACACC
13892431 A
1 A
13892432 GCCATGGTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.24, C:0.55, G:0.00, T:0.22
Consensus pattern (25 bp):
ACAACTCCTCTCCTCCTCCAACACC
Found at i:13896510 original size:12 final size:12
Alignment explanation
Indices: 13896493--13896520 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
13896483 TGAGGAGCAT
13896493 AAATTTTATGAG
1 AAATTTTATGAG
13896505 AAATTTTATGAG
1 AAATTTTATGAG
13896517 AAAT
1 AAAT
13896521 ATTAATTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.46, C:0.00, G:0.14, T:0.39
Consensus pattern (12 bp):
AAATTTTATGAG
Found at i:13909145 original size:36 final size:35
Alignment explanation
Indices: 13909088--13909162 Score: 98
Period size: 36 Copynumber: 2.1 Consensus size: 35
13909078 CATCCACCAT
* *
13909088 TCAATAGATATCATTATCAAAATAACAAG-ATGTCA
1 TCAATAGATATCATCAACAAAATAA-AAGAATGTCA
*
13909123 TCAATAGATTATCATCAACAAAATAATAGAATGTCA
1 TCAATAGA-TATCATCAACAAAATAAAAGAATGTCA
13909159 TCAA
1 TCAA
13909163 CACCCAAGCA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
35 10 0.29
36 25 0.71
ACGTcount: A:0.49, C:0.15, G:0.08, T:0.28
Consensus pattern (35 bp):
TCAATAGATATCATCAACAAAATAAAAGAATGTCA
Found at i:13909743 original size:73 final size:73
Alignment explanation
Indices: 13909604--13909766 Score: 188
Period size: 73 Copynumber: 2.2 Consensus size: 73
13909594 AGACAGAACT
* * **
13909604 AACTTAATCGACCAAGAAGTAAGTTAATCGACTAAGAGCCTACTGCCAGAAATCTAGACTTTAAG
1 AACTTAATCGACTAAGAAGGAAGTTAATCGACTAAGAGCCTACTGCCAGAAATCTAGACTAGAAG
13909669 ACAAAAAC
66 ACAAAAAC
* * * *
13909677 AACTTAATCGACTAAGAAGGAAGTTAGTCGACTAAGTG-CTCACTGTCAGAAA-CTGGGA-TCAG
1 AACTTAATCGACTAAGAAGGAAGTTAATCGACTAAGAGCCT-ACTGCCAGAAATCT-AGACT-AG
*
13909739 AAGACAGAAAC
63 AAGACAAAAAC
*
13909750 AACTTAGTCGACTAAGA
1 AACTTAATCGACTAAGA
13909767 GCACAATTAG
Statistics
Matches: 77, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
72 5 0.06
73 72 0.94
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.20
Consensus pattern (73 bp):
AACTTAATCGACTAAGAAGGAAGTTAATCGACTAAGAGCCTACTGCCAGAAATCTAGACTAGAAG
ACAAAAAC
Found at i:13909778 original size:20 final size:21
Alignment explanation
Indices: 13909748--13909786 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
13909738 GAAGACAGAA
*
13909748 ACAACTTAGTCGACTAAGAGC
1 ACAACTTAGTCAACTAAGAGC
13909769 ACAA-TTAGTCAACTAAGA
1 ACAACTTAGTCAACTAAGA
13909787 TCATTCTGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.44, C:0.21, G:0.15, T:0.21
Consensus pattern (21 bp):
ACAACTTAGTCAACTAAGAGC
Found at i:13918649 original size:73 final size:73
Alignment explanation
Indices: 13918558--13918714 Score: 197
Period size: 73 Copynumber: 2.2 Consensus size: 73
13918548 GAAATGGGTC
* * * * *
13918558 AGTCGACTAAGAGTCTACTGCCAGAAATCTGGACTTCAAGATAGAACCAACTTAACCGACCACGA
1 AGTCGACTAAGAGCCTACTGCCAGAAATCTGGACTTCAAGACAAAAACAACTTAACCGACCAAGA
*
13918623 AGTAAGTT
66 AGGAAGTT
* * * * * *
13918631 AGTCGACTAAGAGCCTACTGCTAGAAATTTGGACTTTAAGACAAAAATAACTTAATCGACTAAGA
1 AGTCGACTAAGAGCCTACTGCCAGAAATCTGGACTTCAAGACAAAAACAACTTAACCGACCAAGA
13918696 AGGAAGTT
66 AGGAAGTT
*
13918704 AGTCAACTAAG
1 AGTCGACTAAG
13918715 TGCTCACTAC
Statistics
Matches: 71, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
73 71 1.00
ACGTcount: A:0.39, C:0.19, G:0.19, T:0.22
Consensus pattern (73 bp):
AGTCGACTAAGAGCCTACTGCCAGAAATCTGGACTTCAAGACAAAAACAACTTAACCGACCAAGA
AGGAAGTT
Found at i:13928811 original size:16 final size:15
Alignment explanation
Indices: 13928787--13928859 Score: 66
Period size: 16 Copynumber: 4.9 Consensus size: 15
13928777 TATTTTATTA
13928787 TTTATTTATTATTTCTT
1 TTTA-TTATTATTT-TT
13928804 TTTATTATTATATTTT
1 TTTATTATTAT-TTTT
13928820 TTTATTA-TA-TTTT
1 TTTATTATTATTTTT
*
13928833 TTCA-TATT-TTTTAT
1 TTTATTATTATTTT-T
13928847 TTTATT-TTATTTT
1 TTTATTATTATTTT
13928860 CATTTATTTA
Statistics
Matches: 48, Mismatches: 2, Indels: 14
0.75 0.03 0.22
Matches are distributed among these distances:
12 2 0.04
13 11 0.23
14 6 0.12
15 7 0.15
16 16 0.33
17 6 0.12
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.77
Consensus pattern (15 bp):
TTTATTATTATTTTT
Found at i:13928825 original size:37 final size:36
Alignment explanation
Indices: 13928775--13928871 Score: 108
Period size: 37 Copynumber: 2.6 Consensus size: 36
13928765 TCAAAAAATG
* *
13928775 TATATTTTATTATTTATTTATT-ATTTCTTTTTATTAT
1 TATATTTTTTTATTTATTTATTCATAT-TTTTTATT-T
*
13928812 TATATTTTTTTATTATATTTTTTCATATTTTTTATTT
1 TATATTTTTTTATT-TATTTATTCATATTTTTTATTT
13928849 TAT-TTTATTTTCATTTATTTATT
1 TATATTT-TTTT-ATTTATTTATT
13928872 TATTGACTTT
Statistics
Matches: 52, Mismatches: 4, Indels: 8
0.81 0.06 0.12
Matches are distributed among these distances:
36 3 0.06
37 28 0.54
38 18 0.35
39 3 0.06
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.74
Consensus pattern (36 bp):
TATATTTTTTTATTTATTTATTCATATTTTTTATTT
Found at i:13928834 original size:29 final size:29
Alignment explanation
Indices: 13928777--13928859 Score: 77
Period size: 29 Copynumber: 2.9 Consensus size: 29
13928767 AAAAAATGTA
*
13928777 TATT-TTATTATTTATTTATTAT-TTCTTTT
1 TATTATTA-TATTTTTTTATTATATT-TTTT
13928806 TATTATTATATTTTTTTATTATATTTTTT
1 TATTATTATATTTTTTTATTATATTTTTT
* *
13928835 CA-TATT-T-TTTATTTTATTTTATTTT
1 TATTATTATATTT-TTTTATTATATTTT
13928860 CATTTATTTA
Statistics
Matches: 48, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
26 3 0.06
27 14 0.29
28 4 0.08
29 22 0.46
30 5 0.10
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (29 bp):
TATTATTATATTTTTTTATTATATTTTTT
Found at i:13928840 original size:15 final size:13
Alignment explanation
Indices: 13928775--13928875 Score: 65
Period size: 13 Copynumber: 8.1 Consensus size: 13
13928765 TCAAAAAATG
*
13928775 TATATTTTATTAT
1 TATATTTTTTTAT
*
13928788 T-TA-TTTATTAT
1 TATATTTTTTTAT
*
13928799 T-TCTTTTTATTAT
1 TATATTTTT-TTAT
13928812 TATATTTTTTTAT
1 TATATTTTTTTAT
*
13928825 TATATTTTTTCA-
1 TATATTTTTTTAT
13928837 TAT-TTTTTATT-T
1 TATATTTTT-TTAT
13928849 TAT-TTTATTTTCAT
1 TATATTT-TTTT-AT
*
13928863 T-TATTTATTTAT
1 TATATTTTTTTAT
13928875 T
1 T
13928876 GACTTTTAGA
Statistics
Matches: 73, Mismatches: 6, Indels: 19
0.74 0.06 0.19
Matches are distributed among these distances:
11 15 0.21
12 20 0.27
13 27 0.37
14 11 0.15
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.74
Consensus pattern (13 bp):
TATATTTTTTTAT
Found at i:13930117 original size:11 final size:11
Alignment explanation
Indices: 13930096--13930154 Score: 52
Period size: 11 Copynumber: 5.4 Consensus size: 11
13930086 TGTTCCCCTT
13930096 TTTTTTAATTAA
1 TTTTTT-ATTAA
13930108 TTTTTTATTATA
1 TTTTTTATTA-A
*
13930120 TTATTTGATT-A
1 TT-TTTTATTAA
*
13930131 --TTTTATTTA
1 TTTTTTATTAA
13930140 TTTTTTATTAA
1 TTTTTTATTAA
13930151 TTTT
1 TTTT
13930155 GATTATATAT
Statistics
Matches: 39, Mismatches: 3, Indels: 11
0.74 0.06 0.21
Matches are distributed among these distances:
8 6 0.15
9 1 0.03
11 17 0.44
12 9 0.23
13 6 0.15
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.73
Consensus pattern (11 bp):
TTTTTTATTAA
Found at i:13930122 original size:16 final size:15
Alignment explanation
Indices: 13930094--13930149 Score: 53
Period size: 16 Copynumber: 3.7 Consensus size: 15
13930084 TCTGTTCCCC
13930094 TTTTTT-TTA-ATTAA
1 TTTTTTATTATATT-A
13930108 TTTTTTATTATATTA
1 TTTTTTATTATATTA
* *
13930123 TTTGATTATTTTATTTA
1 TTT-TTTATTATA-TTA
13930140 TTTTTTATTA
1 TTTTTTATTA
13930150 ATTTTGATTA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
14 6 0.18
15 7 0.21
16 15 0.44
17 6 0.18
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.73
Consensus pattern (15 bp):
TTTTTTATTATATTA
Found at i:13930157 original size:29 final size:33
Alignment explanation
Indices: 13930098--13930160 Score: 89
Period size: 32 Copynumber: 2.0 Consensus size: 33
13930088 TTCCCCTTTT
13930098 TTTTAATTAATTTTTTATTATATTATTTGATTA
1 TTTTAATTAATTTTTTATTATATTATTTGATTA
*
13930131 TTTT-ATTTATTTTTTATTA-A-T-TTTGATTA
1 TTTTAATTAATTTTTTATTATATTATTTGATTA
13930160 T
1 T
13930161 ATATAATTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
29 9 0.31
30 1 0.03
31 1 0.03
32 14 0.48
33 4 0.14
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (33 bp):
TTTTAATTAATTTTTTATTATATTATTTGATTA
Found at i:13930172 original size:32 final size:32
Alignment explanation
Indices: 13930099--13930174 Score: 86
Period size: 32 Copynumber: 2.4 Consensus size: 32
13930089 TCCCCTTTTT
*
13930099 TTTAATTAATTTTTTATTATATTATTTGATTA
1 TTTAATTTATTTTTTATTATATTATTTGATTA
*
13930131 TTTTATTTATTTTTTATTA-A-T-TTTGATTA
1 TTTAATTTATTTTTTATTATATTATTTGATTA
13930160 TATATAATTTTATTT
1 T-T-TAA-TTTATTT
13930175 AAGGAATAAC
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
29 9 0.24
30 2 0.05
31 3 0.08
32 24 0.63
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (32 bp):
TTTAATTTATTTTTTATTATATTATTTGATTA
Found at i:13930175 original size:29 final size:26
Alignment explanation
Indices: 13930110--13930175 Score: 60
Period size: 29 Copynumber: 2.3 Consensus size: 26
13930100 TTAATTAATT
* *
13930110 TTTTATTATATTATTTGATTATTTTAT
1 TTTTATT-TATTATTTGATTATTATAA
*
13930137 TTATTTTTTATTAATTTTGATTATATATAA
1 TT-TTATTTATT-A-TTTGATTAT-TATAA
13930167 TTTTATTTA
1 TTTTATTTA
13930176 AGGAATAACT
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
27 6 0.19
28 5 0.16
29 15 0.48
30 5 0.16
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (26 bp):
TTTTATTTATTATTTGATTATTATAA
Found at i:13933134 original size:29 final size:29
Alignment explanation
Indices: 13933064--13933186 Score: 106
Period size: 29 Copynumber: 4.3 Consensus size: 29
13933054 GTCAACAGTT
** * *
13933064 AAAAGTATCCATTTACTTTTAGTGGGTT-
1 AAAAGTATCCATCCACTCTTGGTGGGTTA
*
13933092 AAAAGTATCGATCCACTCTTGGTGGGTTA
1 AAAAGTATCCATCCACTCTTGGTGGGTTA
* * **
13933121 AAAAGCATCCATCCACT-TCTAGTGTATTA
1 AAAAGTATCCATCCACTCT-TGGTGGGTTA
* * **
13933150 AAAAGTATTCATTCACTCCCGGTGGGTTA
1 AAAAGTATCCATCCACTCTTGGTGGGTTA
13933179 AAAAGTAT
1 AAAAGTAT
13933187 TCATATTATT
Statistics
Matches: 74, Mismatches: 18, Indels: 5
0.76 0.19 0.05
Matches are distributed among these distances:
28 24 0.32
29 50 0.68
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Consensus pattern (29 bp):
AAAAGTATCCATCCACTCTTGGTGGGTTA
Found at i:13933187 original size:29 final size:29
Alignment explanation
Indices: 13933085--13933190 Score: 108
Period size: 29 Copynumber: 3.7 Consensus size: 29
13933075 TTTACTTTTA
*
13933085 GTGGGTT-AAAAGTA-TCGATCCACTCTTG
1 GTGGGTTAAAAAGTATTC-ATCCACTCCTG
* * * *
13933113 GTGGGTTAAAAAGCATCCATCCACTTCTA
1 GTGGGTTAAAAAGTATTCATCCACTCCTG
** * *
13933142 GTGTATTAAAAAGTATTCATTCACTCCCG
1 GTGGGTTAAAAAGTATTCATCCACTCCTG
13933171 GTGGGTTAAAAAGTATTCAT
1 GTGGGTTAAAAAGTATTCAT
13933191 ATTATTAGAA
Statistics
Matches: 61, Mismatches: 15, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
28 7 0.11
29 53 0.87
30 1 0.02
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32
Consensus pattern (29 bp):
GTGGGTTAAAAAGTATTCATCCACTCCTG
Found at i:13933743 original size:23 final size:23
Alignment explanation
Indices: 13933716--13933762 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 23
13933706 GTTATAAACT
13933716 ATAACTT-AAGAGAACAAATAAAG
1 ATAACTTGAA-AGAACAAATAAAG
*
13933739 ATAACTTGAAAGAACAACTAAAG
1 ATAACTTGAAAGAACAAATAAAG
13933762 A
1 A
13933763 AAGAAAATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 20 0.91
24 2 0.09
ACGTcount: A:0.60, C:0.11, G:0.13, T:0.17
Consensus pattern (23 bp):
ATAACTTGAAAGAACAAATAAAG
Found at i:13940720 original size:17 final size:17
Alignment explanation
Indices: 13940698--13940739 Score: 84
Period size: 17 Copynumber: 2.5 Consensus size: 17
13940688 GAAATTGCTC
13940698 TTCTTCTTCTACTAAAA
1 TTCTTCTTCTACTAAAA
13940715 TTCTTCTTCTACTAAAA
1 TTCTTCTTCTACTAAAA
13940732 TTCTTCTT
1 TTCTTCTT
13940740 TCATCAAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.52
Consensus pattern (17 bp):
TTCTTCTTCTACTAAAA
Found at i:13941117 original size:58 final size:57
Alignment explanation
Indices: 13941038--13941219 Score: 194
Period size: 58 Copynumber: 3.2 Consensus size: 57
13941028 ATGTTAAACC
* * *
13941038 TCATGATTAAAAAAGGTTGTTAGGA-GCCATGTTGAAAAAAAATATTATTGTTACATG
1 TCATGTTTAAAAAAAGTTGTTAGCACGCCATGTTG-AAAAAAATATTATTGTTACATG
* *
13941095 TCATGGTTTAAAAAAAGTTGTTA-CACGACATATTGCAAAAAAATATTATTGTTACATG
1 TCAT-GTTTAAAAAAAGTTGTTAGCACGCCATGTTG-AAAAAAATATTATTGTTACATG
* ** * * *
13941153 CCATGTGCAAAAATA--TGTT-GCACGCCTTGTTGAAAAAAATATTGTTGTTACATG
1 TCATGTTTAAAAAAAGTTGTTAGCACGCCATGTTGAAAAAAATATTATTGTTACATG
*
13941207 TCATGTTGAAAAA
1 TCATGTTTAAAAA
13941220 CTATTATTGT
Statistics
Matches: 105, Mismatches: 17, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
54 31 0.30
55 13 0.12
57 13 0.12
58 48 0.46
ACGTcount: A:0.39, C:0.10, G:0.17, T:0.34
Consensus pattern (57 bp):
TCATGTTTAAAAAAAGTTGTTAGCACGCCATGTTGAAAAAAATATTATTGTTACATG
Found at i:13941242 original size:29 final size:29
Alignment explanation
Indices: 13941074--13941256 Score: 100
Period size: 29 Copynumber: 6.4 Consensus size: 29
13941064 CCATGTTGAA
* * *
13941074 AAAAAATATTATTGTTACATGTCATGGTTT
1 AAAAAATATTATTGTTACACG-CATTGTTG
* *
13941104 AAAAAA-A--GTTGTTACACGACA-TATTG
1 AAAAAATATTATTGTTACACG-CATTGTTG
*
13941130 CAAAAAAATATTATTGTTACATGCCA-TG-TG
1 --AAAAAATATTATTGTTACACG-CATTGTTG
* * *
13941160 -CAAAA-A-TA-TGTTGCACGCCTTGTTG
1 AAAAAATATTATTGTTACACGCATTGTTG
* *
13941185 AAAAAAATATTGTTGTTACATGTCA-TGTTG
1 -AAAAAATATTATTGTTACACG-CATTGTTG
* *
13941215 AAAAACTATTATTGTTACACGCATTGTTT
1 AAAAAATATTATTGTTACACGCATTGTTG
*
13941244 AAAAAATTTTATT
1 AAAAAATATTATT
13941257 ACACTTTAAT
Statistics
Matches: 114, Mismatches: 25, Indels: 29
0.68 0.15 0.17
Matches are distributed among these distances:
23 1 0.01
24 9 0.08
25 4 0.04
26 3 0.03
27 19 0.17
28 9 0.08
29 36 0.32
30 20 0.18
31 13 0.11
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.37
Consensus pattern (29 bp):
AAAAAATATTATTGTTACACGCATTGTTG
Found at i:13942141 original size:17 final size:17
Alignment explanation
Indices: 13942116--13942149 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
13942106 GTAAAATCGT
*
13942116 TTGGTTTAATTGATCTA
1 TTGGATTAATTGATCTA
*
13942133 TTGGATTAATTGGTCTA
1 TTGGATTAATTGATCTA
13942150 AAATGTTTGG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.06, G:0.21, T:0.50
Consensus pattern (17 bp):
TTGGATTAATTGATCTA
Found at i:13942266 original size:18 final size:17
Alignment explanation
Indices: 13942231--13942270 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
13942221 CCAAACTAGT
13942231 TATATATATATTTAATA
1 TATATATATATTTAATA
**
13942248 TATATA-ATATTTTTTA
1 TATATATATATTTAATA
13942264 TATATAT
1 TATATAT
13942271 TAAGAAGAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
TATATATATATTTAATA
Found at i:13942664 original size:14 final size:14
Alignment explanation
Indices: 13942645--13942671 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
13942635 CACTTTAGAT
13942645 TTTATAATTAATTG
1 TTTATAATTAATTG
13942659 TTTATAATTAATT
1 TTTATAATTAATT
13942672 ATTATTTATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (14 bp):
TTTATAATTAATTG
Found at i:13942844 original size:206 final size:207
Alignment explanation
Indices: 13942551--13942945 Score: 605
Period size: 206 Copynumber: 1.9 Consensus size: 207
13942541 AATATATTAT
* *
13942551 ATATATTTAATTTATACATAAGCATTACTATAACTTATAATGTACTTTATTTATATGATTACACT
1 ATATATTTAATTTATACATAAGCATTACTACAACTTATAATGAACTTTATTTATATGATTACACT
* * * * *
13942616 TAACAACTTTATTAGTTATCACTTTAGATTTTATAA-TTAATTGTTTATAATTAATTATTATTTA
66 TAACAAATTGATTAGCTATCACTTTACATTTTATAACAT-ATTGTTTATAATTAATTATTATTTA
* * *
13942680 TACAAACTTTGATATAAAATATTTTAACATATAATTTGTATCATTAATTATATATATAATATCAT
130 TACAAACTTTGATATAAAACATTATAACATATAAGTTGTATCATTAATTATATATATAATATCAT
13942745 ATATTGTATATGC
195 ATATTGTATATGC
* *
13942758 ATATATTTAATTTATATATAAGCATTATTACAACTTATAAT-AACTTTATTTATATGATTACACT
1 ATATATTTAATTTATACATAAGCATTACTACAACTTATAATGAACTTTATTTATATGATTACACT
* *
13942822 TAATAAATTGATTAGCTATCACTTTACATTTTATAACATATTGTTTATAATTAGTTATTATTTAT
66 TAACAAATTGATTAGCTATCACTTTACATTTTATAACATATTGTTTATAATTAATTATTATTTAT
* * * *
13942887 ATAAATTTTGATATAAAACATTATAACATATAAGTTGTATTATTAATTCTATATATAAT
131 ACAAACTTTGATATAAAACATTATAACATATAAGTTGTATCATTAATTATATATATAAT
13942946 TATGAATGAA
Statistics
Matches: 169, Mismatches: 18, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
206 130 0.77
207 39 0.23
ACGTcount: A:0.40, C:0.08, G:0.05, T:0.48
Consensus pattern (207 bp):
ATATATTTAATTTATACATAAGCATTACTACAACTTATAATGAACTTTATTTATATGATTACACT
TAACAAATTGATTAGCTATCACTTTACATTTTATAACATATTGTTTATAATTAATTATTATTTAT
ACAAACTTTGATATAAAACATTATAACATATAAGTTGTATCATTAATTATATATATAATATCATA
TATTGTATATGC
Found at i:13953138 original size:3 final size:3
Alignment explanation
Indices: 13953130--13953155 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
13953120 TCCATCACAA
13953130 AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AA
13953156 AACAAGCTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:13956981 original size:28 final size:28
Alignment explanation
Indices: 13956949--13957002 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
13956939 ATTGAAACTT
*
13956949 TATTTATGTTTGATGTAATTTATTTGCA
1 TATTTATATTTGATGTAATTTATTTGCA
*
13956977 TATTTATATTTGGTGTAATTTATTTG
1 TATTTATATTTGATGTAATTTATTTG
13957003 TTTGTAATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.24, C:0.02, G:0.15, T:0.59
Consensus pattern (28 bp):
TATTTATATTTGATGTAATTTATTTGCA
Found at i:13975951 original size:13 final size:13
Alignment explanation
Indices: 13975933--13975957 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
13975923 TTCCAGAAAA
13975933 TTTATAAAATCAT
1 TTTATAAAATCAT
13975946 TTTATAAAATCA
1 TTTATAAAATCA
13975958 CAATTTCTCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTTATAAAATCAT
Found at i:13978048 original size:26 final size:26
Alignment explanation
Indices: 13978018--13978104 Score: 102
Period size: 26 Copynumber: 3.3 Consensus size: 26
13978008 TCTTCCCATC
**
13978018 TCTTTCTAATTGGGCCATGCCCATTT
1 TCTTTCTTGTTGGGCCATGCCCATTT
* *
13978044 TCTTTCTTGTTGGGCCGTACCCATTTT
1 TCTTTCTTGTTGGGCCATGCCCA-TTT
* *
13978071 TCTTTCTTGTTGGGTCATGCCTATTT
1 TCTTTCTTGTTGGGCCATGCCCATTT
*
13978097 TTTTTCTT
1 TCTTTCTT
13978105 TCTTGTTACT
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
26 29 0.57
27 22 0.43
ACGTcount: A:0.09, C:0.23, G:0.16, T:0.52
Consensus pattern (26 bp):
TCTTTCTTGTTGGGCCATGCCCATTT
Found at i:13978343 original size:36 final size:35
Alignment explanation
Indices: 13978296--13978368 Score: 110
Period size: 36 Copynumber: 2.1 Consensus size: 35
13978286 TATTGGCTTC
* * *
13978296 AAAATCAGCAGCTAAGCTGCTCTATTTCTCTTCAAA
1 AAAATCAGCAGCTAAGCTGCACT-TTTCCCTCCAAA
13978332 AAAATCAGCAGCTAAGCTGCACTTTTCCCTCCAAA
1 AAAATCAGCAGCTAAGCTGCACTTTTCCCTCCAAA
13978367 AA
1 AA
13978369 TTAGCAGCAA
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
35 12 0.35
36 22 0.65
ACGTcount: A:0.36, C:0.27, G:0.11, T:0.26
Consensus pattern (35 bp):
AAAATCAGCAGCTAAGCTGCACTTTTCCCTCCAAA
Found at i:13978377 original size:36 final size:36
Alignment explanation
Indices: 13978296--13978377 Score: 94
Period size: 36 Copynumber: 2.3 Consensus size: 36
13978286 TATTGGCTTC
* * * *
13978296 AAAATCAGCAGCTAAGCTGCTCTATTTCTCTTCAAA
1 AAAAGCAGCAGCTAAGCTGCACTATTTCCCTCCAAA
*
13978332 AAAATCAGCAGCTAAGCTGCACT-TTTCCCTCCAAA
1 AAAAGCAGCAGCTAAGCTGCACTATTTCCCTCCAAA
*
13978367 AATTAGCAGCA
1 AA-AAGCAGCA
13978378 AAAACAACAA
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
35 12 0.30
36 28 0.70
ACGTcount: A:0.35, C:0.27, G:0.12, T:0.26
Consensus pattern (36 bp):
AAAAGCAGCAGCTAAGCTGCACTATTTCCCTCCAAA
Found at i:13985216 original size:13 final size:13
Alignment explanation
Indices: 13985198--13985222 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
13985188 TTCTAGAAAA
13985198 TTTATAAAATCAT
1 TTTATAAAATCAT
13985211 TTTATAAAATCA
1 TTTATAAAATCA
13985223 CAATTTCTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTTATAAAATCAT
Found at i:13986619 original size:19 final size:19
Alignment explanation
Indices: 13986595--13986632 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
13986585 CTGCCAAACC
13986595 CTCAAATTATACTCCAATA
1 CTCAAATTATACTCCAATA
13986614 CTCAAATTATACTCCAATA
1 CTCAAATTATACTCCAATA
13986633 AGTTAATATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.26, G:0.00, T:0.32
Consensus pattern (19 bp):
CTCAAATTATACTCCAATA
Found at i:13988367 original size:19 final size:19
Alignment explanation
Indices: 13988343--13988380 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
13988333 ACTTCTTAAC
13988343 CTCAAATCATACTCCAATA
1 CTCAAATCATACTCCAATA
13988362 CTCAAATCATACTCCAATA
1 CTCAAATCATACTCCAATA
13988381 AGTCAAATGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.32, G:0.00, T:0.26
Consensus pattern (19 bp):
CTCAAATCATACTCCAATA
Found at i:13989104 original size:19 final size:20
Alignment explanation
Indices: 13989077--13989114 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
13989067 GAACTAGTCC
13989077 AAATAGAG-ATTTTAAAACG
1 AAATAGAGAATTTTAAAACG
*
13989096 AAATTGAGAATTTTAAAAC
1 AAATAGAGAATTTTAAAAC
13989115 CCCAGAATGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.53, C:0.05, G:0.13, T:0.29
Consensus pattern (20 bp):
AAATAGAGAATTTTAAAACG
Found at i:13989604 original size:22 final size:21
Alignment explanation
Indices: 13989576--13989622 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
13989566 TATGGCTGGC
*
13989576 CAAAGGAAGAACAAAGTAAAAA
1 CAAAGGAAGAA-AAAGGAAAAA
*
13989598 CAAAGGAAGAAAAAGGAAGAA
1 CAAAGGAAGAAAAAGGAAAAA
13989619 CAAA
1 CAAA
13989623 ACCCTAGGTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 12 0.52
22 11 0.48
ACGTcount: A:0.68, C:0.09, G:0.21, T:0.02
Consensus pattern (21 bp):
CAAAGGAAGAAAAAGGAAAAA
Found at i:13989665 original size:21 final size:21
Alignment explanation
Indices: 13989635--13989674 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
13989625 CCTAGGTAGA
*
13989635 AAAATTAAGGGAA-AAGTGTG
1 AAAATTAAGGAAACAAGTGTG
13989655 AAAATTCAAGGAAACAAGTG
1 AAAATT-AAGGAAACAAGTG
13989675 ACAAAAGGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
21 6 0.35
22 5 0.29
ACGTcount: A:0.53, C:0.05, G:0.25, T:0.17
Consensus pattern (21 bp):
AAAATTAAGGAAACAAGTGTG
Found at i:13992005 original size:11 final size:11
Alignment explanation
Indices: 13991989--13992016 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
13991979 AGCTTTTGGG
13991989 TTTAAAGTTGT
1 TTTAAAGTTGT
13992000 TTTAAAGTTGT
1 TTTAAAGTTGT
13992011 TTTAAA
1 TTTAAA
13992017 ATTTATAGTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.14, T:0.54
Consensus pattern (11 bp):
TTTAAAGTTGT
Found at i:13999720 original size:20 final size:20
Alignment explanation
Indices: 13999663--13999725 Score: 101
Period size: 20 Copynumber: 3.2 Consensus size: 20
13999653 TATATACCCA
*
13999663 TCATCATCATC-TCACCAAC
1 TCATCATCATCATCACCAGC
*
13999682 CCATCATCATCATCACCAGC
1 TCATCATCATCATCACCAGC
13999702 TCATCATCATCATCACCAGC
1 TCATCATCATCATCACCAGC
13999722 TCAT
1 TCAT
13999726 ACTCACTCCC
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
19 10 0.25
20 30 0.75
ACGTcount: A:0.30, C:0.41, G:0.03, T:0.25
Consensus pattern (20 bp):
TCATCATCATCATCACCAGC
Found at i:13999776 original size:43 final size:43
Alignment explanation
Indices: 13999729--13999876 Score: 206
Period size: 43 Copynumber: 3.4 Consensus size: 43
13999719 AGCTCATACT
** *
13999729 CACTCCCTACTCGCACATGGCTGGGTCATCATCGGGTTATGCG
1 CACTCCCTACTCGCACATAACTGGGTCATCATCGGGTTATGAG
* * * *
13999772 CACTCCCTACTCGCACATAACCGAGTCATCACCGGGTTATGTG
1 CACTCCCTACTCGCACATAACTGGGTCATCATCGGGTTATGAG
* **
13999815 CACTCCCTACTCGCACATAACTGGGTCATCCTCGACTTATGAG
1 CACTCCCTACTCGCACATAACTGGGTCATCATCGGGTTATGAG
13999858 CACTCCCTACTCGCACATA
1 CACTCCCTACTCGCACATA
13999877 GCCGAGTCAA
Statistics
Matches: 92, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 92 1.00
ACGTcount: A:0.22, C:0.36, G:0.18, T:0.24
Consensus pattern (43 bp):
CACTCCCTACTCGCACATAACTGGGTCATCATCGGGTTATGAG
Found at i:14004587 original size:17 final size:19
Alignment explanation
Indices: 14004546--14004587 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
14004536 ATGTATATAT
14004546 ATGAATATATGTTGTGCATTG
1 ATGAATATATGTTGTG-A-TG
14004567 ATGAATA-ATGTTGTG-TG
1 ATGAATATATGTTGTGATG
14004584 ATGA
1 ATGA
14004588 TGTTGAAGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
17 6 0.29
20 8 0.38
21 7 0.33
ACGTcount: A:0.31, C:0.02, G:0.26, T:0.40
Consensus pattern (19 bp):
ATGAATATATGTTGTGATG
Found at i:14004624 original size:37 final size:37
Alignment explanation
Indices: 14004582--14004690 Score: 184
Period size: 37 Copynumber: 2.9 Consensus size: 37
14004572 TAATGTTGTG
14004582 TGATGATGTTGAAGTGTGCGAGTAGGGAGTGCACACA
1 TGATGATGTTGAAGTGTGCGAGTAGGGAGTGCACACA
*
14004619 TGATGATGTTGAAGTATGCGAGTAGGGAGTGCACACA
1 TGATGATGTTGAAGTGTGCGAGTAGGGAGTGCACACA
*
14004656 TGATGATGTT-AGAGTGTGTGAGTAGGGAGTGCACA
1 TGATGATGTTGA-AGTGTGCGAGTAGGGAGTGCACA
14004691 TGACGATGAA
Statistics
Matches: 68, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
36 1 0.01
37 67 0.99
ACGTcount: A:0.28, C:0.09, G:0.38, T:0.26
Consensus pattern (37 bp):
TGATGATGTTGAAGTGTGCGAGTAGGGAGTGCACACA
Found at i:14004737 original size:12 final size:12
Alignment explanation
Indices: 14004720--14004744 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
14004710 GTGGTGTACG
14004720 TGTTTATATATA
1 TGTTTATATATA
14004732 TGTTTATATATA
1 TGTTTATATATA
14004744 T
1 T
14004745 ATATACGTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.60
Consensus pattern (12 bp):
TGTTTATATATA
Found at i:14011556 original size:17 final size:19
Alignment explanation
Indices: 14011515--14011556 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
14011505 TTGTATATAT
14011515 ATGAATATATGTTGTGCATTG
1 ATGAATATATGTTGTG-A-TG
14011536 ATGAATA-ATGTTGTG-TG
1 ATGAATATATGTTGTGATG
14011553 ATGA
1 ATGA
14011557 TGTTGAAGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
17 6 0.29
20 8 0.38
21 7 0.33
ACGTcount: A:0.31, C:0.02, G:0.26, T:0.40
Consensus pattern (19 bp):
ATGAATATATGTTGTGATG
Found at i:14011593 original size:37 final size:37
Alignment explanation
Indices: 14011551--14011727 Score: 226
Period size: 37 Copynumber: 4.9 Consensus size: 37
14011541 TAATGTTGTG
*
14011551 TGATGATGTTGAAGTGTGCGAGCAGGGAGTGCACACA
1 TGATGATGTTGAAGTGTGCGAGTAGGGAGTGCACACA
14011588 TGATGATGTTGAAGTGTGCGAGTAGGGCA-TGCACAC-
1 TGATGATGTTGAAGTGTGCGAGTAGGG-AGTGCACACA
* * *
14011624 -----ATGTTAAAGTGTACAAGTAGGGAGTGCACACA
1 TGATGATGTTGAAGTGTGCGAGTAGGGAGTGCACACA
*
14011656 TGATGAAGTT-AGAGTGTGCGAGTAGGGAGTGCACACA
1 TGATGATGTTGA-AGTGTGCGAGTAGGGAGTGCACACA
*
14011693 TGATGATGTTGAACTGTGCGAGTAGGGAGTGCACA
1 TGATGATGTTGAAGTGTGCGAGTAGGGAGTGCACA
14011728 TGACGATGAA
Statistics
Matches: 121, Mismatches: 9, Indels: 20
0.81 0.06 0.13
Matches are distributed among these distances:
30 1 0.01
31 26 0.21
36 1 0.01
37 91 0.75
38 2 0.02
ACGTcount: A:0.29, C:0.12, G:0.36, T:0.23
Consensus pattern (37 bp):
TGATGATGTTGAAGTGTGCGAGTAGGGAGTGCACACA
Found at i:14011628 original size:31 final size:31
Alignment explanation
Indices: 14011593--14011664 Score: 92
Period size: 31 Copynumber: 2.3 Consensus size: 31
14011583 ACACATGATG
* *
14011593 ATGTTGAAGTGTGCGAGTAGGGCA-TGCACAC
1 ATGTTGAAGTGTACAAGTAGGG-AGTGCACAC
*
14011624 ATGTTAAAGTGTACAAGTAGGGAGTGCACAC
1 ATGTTGAAGTGTACAAGTAGGGAGTGCACAC
*
14011655 ATGATGAAGT
1 ATGTTGAAGT
14011665 TAGAGTGTGC
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
30 1 0.03
31 34 0.97
ACGTcount: A:0.32, C:0.12, G:0.32, T:0.24
Consensus pattern (31 bp):
ATGTTGAAGTGTACAAGTAGGGAGTGCACAC
Found at i:14011647 original size:68 final size:68
Alignment explanation
Indices: 14011556--14011694 Score: 201
Period size: 68 Copynumber: 2.0 Consensus size: 68
14011546 TTGTGTGATG
* * * *
14011556 ATGTTGAAGTGTGCGAGCAGGGAGTGCACACATGATGATGTT-GAAGTGTGCGAGTAGGGCA-TG
1 ATGTTAAAGTGTACAAGCAGGGAGTGCACACATGATGAAGTTAG-AGTGTGCGAGTAGGG-AGTG
14011619 CACAC
64 CACAC
*
14011624 ATGTTAAAGTGTACAAGTAGGGAGTGCACACATGATGAAGTTAGAGTGTGCGAGTAGGGAGTGCA
1 ATGTTAAAGTGTACAAGCAGGGAGTGCACACATGATGAAGTTAGAGTGTGCGAGTAGGGAGTGCA
14011689 CAC
66 CAC
14011692 ATG
1 ATG
14011695 ATGATGTTGA
Statistics
Matches: 64, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
67 1 0.02
68 62 0.97
69 1 0.02
ACGTcount: A:0.29, C:0.13, G:0.35, T:0.22
Consensus pattern (68 bp):
ATGTTAAAGTGTACAAGCAGGGAGTGCACACATGATGAAGTTAGAGTGTGCGAGTAGGGAGTGCA
CAC
Found at i:14015056 original size:36 final size:36
Alignment explanation
Indices: 14015016--14015149 Score: 205
Period size: 36 Copynumber: 3.7 Consensus size: 36
14015006 GCTTATGCTC
*
14015016 AAAACTTATTAAAAGAAAAGAAACAAGCCCATGCCT
1 AAAACTTATTAAAAGAAAAGAAGCAAGCCCATGCCT
*
14015052 AAAACTTATTAAAGGAAAAGAAGCAAGCCCATGCCT
1 AAAACTTATTAAAAGAAAAGAAGCAAGCCCATGCCT
* * *
14015088 AAAACTTATTAAAGGAAAAGAAGCAAGCTCATGCCC
1 AAAACTTATTAAAAGAAAAGAAGCAAGCCCATGCCT
* *
14015124 AAAACTTGTTCAAAGAAAAGAAGCAA
1 AAAACTTATTAAAAGAAAAGAAGCAA
14015150 TTCAGTTTTT
Statistics
Matches: 91, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 91 1.00
ACGTcount: A:0.51, C:0.18, G:0.15, T:0.16
Consensus pattern (36 bp):
AAAACTTATTAAAAGAAAAGAAGCAAGCCCATGCCT
Found at i:14017302 original size:42 final size:42
Alignment explanation
Indices: 14017177--14017302 Score: 162
Period size: 42 Copynumber: 3.0 Consensus size: 42
14017167 AGCTCATATG
* * * *
14017177 CATCGGCTTATGTGCATTCCCACTCGCACATAGTCGGGTCAG
1 CATCGGCTTATGCGCACTCCCACTCGCACATAGCCGGGTCAA
* ** *
14017219 CATCGGCTTATGCGTACTCCCACTATCACATAGCTGGGTCAA
1 CATCGGCTTATGCGCACTCCCACTCGCACATAGCCGGGTCAA
* *
14017261 CATCGGCTTATGCACACTCCTACTCGCACATAGCCGGGTCAA
1 CATCGGCTTATGCGCACTCCCACTCGCACATAGCCGGGTCAA
14017303 TATCATTACA
Statistics
Matches: 70, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.22, C:0.33, G:0.21, T:0.25
Consensus pattern (42 bp):
CATCGGCTTATGCGCACTCCCACTCGCACATAGCCGGGTCAA
Found at i:14021324 original size:25 final size:26
Alignment explanation
Indices: 14021296--14021350 Score: 87
Period size: 25 Copynumber: 2.2 Consensus size: 26
14021286 TCCCAACCAC
*
14021296 GTATAT-CAACTCGTGGCCTTGCCAT
1 GTATATACAACCCGTGGCCTTGCCAT
14021321 GTAT-TACAACCCGTGGCCTTGCCAT
1 GTATATACAACCCGTGGCCTTGCCAT
14021346 GTATA
1 GTATA
14021351 ATCACAAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 1 0.04
25 26 0.96
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (26 bp):
GTATATACAACCCGTGGCCTTGCCAT
Found at i:14033852 original size:95 final size:92
Alignment explanation
Indices: 14033646--14033840 Score: 234
Period size: 95 Copynumber: 2.1 Consensus size: 92
14033636 TTTGTTCGTT
* *
14033646 ATTATTGAAGTAAAAATATTTTTATTATTAAATTAATTTAAATTAATAATTATAAATTTATATAA
1 ATTATT-AAG-AAAAATATTTTTATTATTAAATTAATTTAAATGAAAAATTATAAATTTATATAA
*
14033711 GACAATAATAAAAAGGAAAGAAAAATATA
64 GACAATAATAAAAAGGAAAGAAAAATAGA
* * *
14033740 ATTGTTAAGGTAAAAATATATTTTATTATTGAATTAATTTACATAGAAAAATTATAAATTTA-AT
1 ATTATTAA-G-AAAAATAT-TTTTATTATTAAATTAATTTAAAT-GAAAAATTATAAATTTATAT
14033804 AA-ACAATAATAAAAAGAAGGAAAGAAAAA-AGA
62 AAGACAATAAT--AAA-AAGGAAAGAAAAATAGA
14033836 ATTAT
1 ATTAT
14033841 ATAAAATAAA
Statistics
Matches: 88, Mismatches: 7, Indels: 10
0.84 0.07 0.10
Matches are distributed among these distances:
93 2 0.02
94 23 0.26
95 26 0.30
96 24 0.27
97 13 0.15
ACGTcount: A:0.55, C:0.02, G:0.08, T:0.35
Consensus pattern (92 bp):
ATTATTAAGAAAAATATTTTTATTATTAAATTAATTTAAATGAAAAATTATAAATTTATATAAGA
CAATAATAAAAAGGAAAGAAAAATAGA
Found at i:14036810 original size:19 final size:19
Alignment explanation
Indices: 14036786--14036823 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
14036776 ACTTCTTAAC
*
14036786 CTCAAATCGTACTCCAATA
1 CTCAAATCATACTCCAATA
*
14036805 CTCAAATCATACTCTAATA
1 CTCAAATCATACTCCAATA
14036824 AGTCAAATGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.39, C:0.29, G:0.03, T:0.29
Consensus pattern (19 bp):
CTCAAATCATACTCCAATA
Found at i:14112223 original size:28 final size:27
Alignment explanation
Indices: 14112171--14112224 Score: 72
Period size: 28 Copynumber: 2.0 Consensus size: 27
14112161 GTGTCCTGGT
* *
14112171 GGTGGAAAATTACGATTTTGCCCCTAG
1 GGTGGAAAATTACCATTTTACCCCTAG
*
14112198 GGTGGCAAAATTACCATTTTATCCCTA
1 GGTGG-AAAATTACCATTTTACCCCTA
14112225 TGTTTTGAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 5 0.22
28 18 0.78
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.31
Consensus pattern (27 bp):
GGTGGAAAATTACCATTTTACCCCTAG
Found at i:14121465 original size:19 final size:19
Alignment explanation
Indices: 14121441--14121478 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
14121431 ACTTCTTAAC
14121441 CTCAAATCATACTCCAATA
1 CTCAAATCATACTCCAATA
*
14121460 CTCAAATCATACTCTAATA
1 CTCAAATCATACTCCAATA
14121479 AGTCAAATGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.42, C:0.29, G:0.00, T:0.29
Consensus pattern (19 bp):
CTCAAATCATACTCCAATA
Found at i:14134258 original size:31 final size:31
Alignment explanation
Indices: 14134220--14134291 Score: 117
Period size: 31 Copynumber: 2.3 Consensus size: 31
14134210 ATTTTTGTTT
14134220 AATTTAGTCCCTGTATTCTACAATTTCGTTC
1 AATTTAGTCCCTGTATTCTACAATTTCGTTC
* * *
14134251 AATTTAGTCTCTGTATTCTATAATTTTGTTC
1 AATTTAGTCCCTGTATTCTACAATTTCGTTC
14134282 AATTTAGTCC
1 AATTTAGTCC
14134292 TTATAACGTA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.24, C:0.18, G:0.10, T:0.49
Consensus pattern (31 bp):
AATTTAGTCCCTGTATTCTACAATTTCGTTC
Found at i:14135471 original size:20 final size:20
Alignment explanation
Indices: 14135446--14135491 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
14135436 TTTTGACCCC
14135446 ATTTGACTTATTGGAGTATA
1 ATTTGACTTATTGGAGTATA
*
14135466 ATTTGACTTATTGGAGTATG
1 ATTTGACTTATTGGAGTATA
14135486 ATTTGA
1 ATTTGA
14135492 GGTTTAGAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.28, C:0.04, G:0.22, T:0.46
Consensus pattern (20 bp):
ATTTGACTTATTGGAGTATA
Found at i:14142915 original size:21 final size:20
Alignment explanation
Indices: 14142891--14142963 Score: 58
Period size: 21 Copynumber: 3.5 Consensus size: 20
14142881 ATATTATGTC
14142891 TAAATTTAAATAAATTAAATT
1 TAAATTT-AATAAATTAAATT
* * *
14142912 TAAATGTAATTAATCCT-TATT
1 TAAATTTAATAAAT--TAAATT
*
14142933 TAAATTTTAACAAATTAAATT
1 TAAA-TTTAATAAATTAAATT
*
14142954 TAAATATAAT
1 TAAATTTAAT
14142964 GGATAGATAA
Statistics
Matches: 39, Mismatches: 9, Indels: 9
0.68 0.16 0.16
Matches are distributed among these distances:
20 11 0.28
21 20 0.51
22 8 0.21
ACGTcount: A:0.51, C:0.04, G:0.01, T:0.44
Consensus pattern (20 bp):
TAAATTTAATAAATTAAATT
Found at i:14143181 original size:16 final size:16
Alignment explanation
Indices: 14143160--14143192 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
14143150 CACATTGGCA
14143160 TCAATTTATAC-CATTC
1 TCAATTTA-ACTCATTC
14143176 TCAATTTAACTCATTC
1 TCAATTTAACTCATTC
14143192 T
1 T
14143193 TCATTCATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 2 0.12
16 14 0.88
ACGTcount: A:0.30, C:0.24, G:0.00, T:0.45
Consensus pattern (16 bp):
TCAATTTAACTCATTC
Found at i:14161050 original size:48 final size:47
Alignment explanation
Indices: 14160935--14161052 Score: 166
Period size: 47 Copynumber: 2.5 Consensus size: 47
14160925 TACATACAAG
* *
14160935 TTTACTTAACAAATAAGTAAAATAATTACATTATGCATTTTATAAAT
1 TTTACTTAACAAGTAAGTAAAATAATTACATCATGCATTTTATAAAT
* *
14160982 TTTACTTAAC-AGATAAGTAAAATAATTACATCATGTATTTTTTATAAT
1 TTTACTTAACAAG-TAAGTAAAATAATTACATCATGCATTTTATA-AAT
*
14161030 TTTACCTAACAAGTAAGTAAAAT
1 TTTACTTAACAAGTAAGTAAAAT
14161053 CATACAAAAT
Statistics
Matches: 63, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
46 1 0.02
47 38 0.60
48 22 0.35
49 2 0.03
ACGTcount: A:0.45, C:0.09, G:0.06, T:0.40
Consensus pattern (47 bp):
TTTACTTAACAAGTAAGTAAAATAATTACATCATGCATTTTATAAAT
Found at i:14162837 original size:17 final size:17
Alignment explanation
Indices: 14162815--14162868 Score: 90
Period size: 17 Copynumber: 3.2 Consensus size: 17
14162805 TCAAACCAAG
14162815 CACATTAAGATCCTTAA
1 CACATTAAGATCCTTAA
*
14162832 CACATTAAGATCTTTAA
1 CACATTAAGATCCTTAA
*
14162849 CACATTAAGATCCCTAA
1 CACATTAAGATCCTTAA
14162866 CAC
1 CAC
14162869 GACACCTAAG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 34 1.00
ACGTcount: A:0.41, C:0.26, G:0.06, T:0.28
Consensus pattern (17 bp):
CACATTAAGATCCTTAA
Found at i:14167253 original size:103 final size:102
Alignment explanation
Indices: 14167119--14167349 Score: 345
Period size: 102 Copynumber: 2.3 Consensus size: 102
14167109 CATTAGGTGC
* *
14167119 CTGAATATTTGTTGAACATTGTGTGAGTTCTTTATAGGCATTACGTGACTGAATATATGTTGAGC
1 CTGAATATTTGTTGAGCATTGCGTGAGTTCTTTATAGGCATTACGTGACTGAATATATGTT-AGC
* **
14167184 GTTGTGTGACAGTTAATACGTGACTGAATATTACCTGA
65 GTTGCGTGACAGACAATACGTGACTGAATATTACCTGA
* *
14167222 CTGAATATTTGTTGAGCATTGCGTGAGTTCTTTATAGGCATTACGTGACTGAATATTTGTTAGTG
1 CTGAATATTTGTTGAGCATTGCGTGAGTTCTTTATAGGCATTACGTGACTGAATATATGTTAGCG
** * *
14167287 TTGCGTGACAGACGTTACGTGACTTAATATTACGTGA
66 TTGCGTGACAGACAATACGTGACTGAATATTACCTGA
*
14167324 CTAAATATTTGTTGAGCATTGCGTGA
1 CTGAATATTTGTTGAGCATTGCGTGA
14167350 CCTATTTTTA
Statistics
Matches: 116, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
102 58 0.50
103 58 0.50
ACGTcount: A:0.26, C:0.12, G:0.24, T:0.38
Consensus pattern (102 bp):
CTGAATATTTGTTGAGCATTGCGTGAGTTCTTTATAGGCATTACGTGACTGAATATATGTTAGCG
TTGCGTGACAGACAATACGTGACTGAATATTACCTGA
Found at i:14167321 original size:15 final size:15
Alignment explanation
Indices: 14167301--14167332 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
14167291 GTGACAGACG
*
14167301 TTACGTGACTTAATA
1 TTACGTGACTAAATA
14167316 TTACGTGACTAAATA
1 TTACGTGACTAAATA
14167331 TT
1 TT
14167333 TGTTGAGCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.34, C:0.12, G:0.12, T:0.41
Consensus pattern (15 bp):
TTACGTGACTAAATA
Found at i:14167938 original size:30 final size:30
Alignment explanation
Indices: 14167902--14167961 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
14167892 GGAGGTGCCT
*
14167902 TTGAGTGTAAGGGACCAGTTGGACATATTC
1 TTGAGTGTAAGGGACCAGTTGCACATATTC
*
14167932 TTGAGTGTGAGGGACCAGTTGCACATATTC
1 TTGAGTGTAAGGGACCAGTTGCACATATTC
14167962 CAGCAAGAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.25, C:0.15, G:0.30, T:0.30
Consensus pattern (30 bp):
TTGAGTGTAAGGGACCAGTTGCACATATTC
Found at i:14168794 original size:111 final size:111
Alignment explanation
Indices: 14168599--14169030 Score: 555
Period size: 111 Copynumber: 3.8 Consensus size: 111
14168589 GGTGCGTGAC
*
14168599 TGACTTGTGCAA-TCATGTGTTGCTTT-GAGGCTTTTGTTCAGTAGTTTTTTAGGCAGTGCGTGA
1 TGACTTGTGCAATTCATGTGTTG-TTTAGAGGCTTTTGTTCAGTAGTTTTTTAGGC-TTGCGTGA
*
14168662 CTGGTTTTTATATATTACGTTACCTGTTGTAGCGAGAGTGGTGGAACG
64 CTGGTTTTTATATATTACGTTACCTGTTGTAGCGAGAGTGGTGGAGCG
* *
14168710 TGACTTGTGCAATTCATGTGTTGTTTTGAGGCTTTTGTTCAGTAATTTTTTAGGCTTGCGTGACT
1 TGACTTGTGCAATTCATGTGTTGTTTAGAGGCTTTTGTTCAGTAGTTTTTTAGGCTTGCGTGACT
* * *
14168775 GGTTTTTATATATTGCGTTACCTGTTGTAGCGTGAGTGGTGGAGCA
66 GGTTTTTATATATTACGTTACCTGTTGTAGCGAGAGTGGTGGAGCG
* * *
14168821 TGACTTGTGTAATTCATGTGTTGTTTAGAGGCTTTTGTTCAGT-GTTTTTTAGGGTTGCGTGACC
1 TGACTTGTGCAATTCATGTGTTGTTTAGAGGCTTTTGTTCAGTAGTTTTTTAGGCTTGCGTGACT
** *
14168885 AATTTTTATATATTACGTTACCTATTGTTATGTATTGCGAGAGTGGTGGCGCG
66 GGTTTTTATATATTACGTTACC---TG-T-TGTA--GCGAGAGTGGTGGAGCG
* * * * * * *
14168938 TGACTTGTGTAATTCATGTGTTGTTTAGAGGCTTTTGTTCAGTAGTGTTTTAGGATTTCATTATT
1 TGACTTGTGCAATTCATGTGTTGTTTAGAGGCTTTTGTTCAGTAGTTTTTTAGGCTTGCGTGACT
* * *
14169003 GGTTTTTATGTATTACGTGACCTATTGT
66 GGTTTTTATATATTACGTTACCTGTTGT
14169031 TATATATTGC
Statistics
Matches: 282, Mismatches: 29, Indels: 18
0.86 0.09 0.05
Matches are distributed among these distances:
110 37 0.13
111 107 0.38
112 37 0.13
113 5 0.02
114 2 0.01
115 5 0.02
117 57 0.20
118 32 0.11
ACGTcount: A:0.18, C:0.11, G:0.27, T:0.45
Consensus pattern (111 bp):
TGACTTGTGCAATTCATGTGTTGTTTAGAGGCTTTTGTTCAGTAGTTTTTTAGGCTTGCGTGACT
GGTTTTTATATATTACGTTACCTGTTGTAGCGAGAGTGGTGGAGCG
Found at i:14168966 original size:117 final size:118
Alignment explanation
Indices: 14168808--14169069 Score: 355
Period size: 118 Copynumber: 2.2 Consensus size: 118
14168798 GTTGTAGCGT
* *
14168808 GAGTGGTGGAGCATGACTTGTGTAATTCATGTGTTGTTTAGAGGCTTTTGTTCAGT-GTTTTTTA
1 GAGTGGTGGAGCGTGACTTGTGTAATTCATGTGTTGTTTAGAGGCTTTTGTTCAGTAGTGTTTTA
* * * *
14168872 GGGTTGCGTGACCAATTTTTATATATTACGTTACCTATTGTTATGTATTGCGA
66 GGATTGCATGACCAATTTTTATATATTACGTGACCTATTGTTATATATTGCGA
*
14168925 GAGTGGTGGCGCGTGACTTGTGTAATTCATGTGTTGTTTAGAGGCTTTTGTTCAGTAGTGTTTTA
1 GAGTGGTGGAGCGTGACTTGTGTAATTCATGTGTTGTTTAGAGGCTTTTGTTCAGTAGTGTTTTA
* * **** *
14168990 GGATTTCATTATTGGTTTTTATGTATTACGTGACCTATTGTTATATATTGCGA
66 GGATTGCATGACCAATTTTTATATATTACGTGACCTATTGTTATATATTGCGA
* * * *
14169043 AAGCGGTGGTGCGTGACTTGTGCAATT
1 GAGTGGTGGAGCGTGACTTGTGTAATT
14169070 TTCCTCNTGG
Statistics
Matches: 126, Mismatches: 18, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
117 54 0.43
118 72 0.57
ACGTcount: A:0.19, C:0.10, G:0.27, T:0.44
Consensus pattern (118 bp):
GAGTGGTGGAGCGTGACTTGTGTAATTCATGTGTTGTTTAGAGGCTTTTGTTCAGTAGTGTTTTA
GGATTGCATGACCAATTTTTATATATTACGTGACCTATTGTTATATATTGCGA
Found at i:14169008 original size:228 final size:221
Alignment explanation
Indices: 14168599--14169030 Score: 573
Period size: 228 Copynumber: 1.9 Consensus size: 221
14168589 GGTGCGTGAC
*
14168599 TGACTTGTGCAATCATGTGTTGCTTTGAGGCTTTTGTTCAGTAGTTTTTTAGGCAGTGCGTGACT
1 TGACTTGTGCAATCATGTGTTGCTTTGAGGCTTTTGTTCAGTAGTTTTTTAGG-AGTGCGTGACC
**
14168664 GGTTTTTATATATTACGTTACCTGTTGTAGCGAGAGTGGTGGAACGTGACTTGTGCAATTCATGT
65 AATTTTTATATATTACGTTACCTGTTGTAGCGAGAGTGGTGGAACGTGACTTGTGCAATTCATGT
* * * * * *
14168729 GTTGTTTTGAGGCTTTTGTTCAGTAATTTTTTAGGCTTGCGTGACTGGTTTTTATATATTGCGTT
130 GTTGTTTAGAGGCTTTTGTTCAGTAATGTTTTAGGATTGCATGACTGGTTTTTATATATTACGTG
*
14168794 ACCTGTTGTAGCGTGAGTGGTGGAGCA
195 ACCTATTGTAGCGTGAGTGGTGGAGCA
*
14168821 TGACTTGTGTAATTCATGTGTTG-TTTAGAGGCTTTTGTTCAGT-GTTTTTTAGG-GTTGCGTGA
1 TGACTTGTGCAA-TCATGTGTTGCTTT-GAGGCTTTTGTTCAGTAGTTTTTTAGGAG-TGCGTGA
** *
14168883 CCAATTTTTATATATTACGTTACCTATTGTTATGTATTGCGAGAGTGGTGGCGCGTGACTTGTGT
63 CCAATTTTTATATATTACGTTACC---TG-T-TGTA--GCGAGAGTGGTGGAACGTGACTTGTGC
* * * * *
14168948 AATTCATGTGTTGTTTAGAGGCTTTTGTTCAGTAGTGTTTTAGGATTTCATTATTGGTTTTTATG
121 AATTCATGTGTTGTTTAGAGGCTTTTGTTCAGTAATGTTTTAGGATTGCATGACTGGTTTTTATA
14169013 TATTACGTGACCTATTGT
186 TATTACGTGACCTATTGT
14169031 TATATATTGC
Statistics
Matches: 181, Mismatches: 19, Indels: 14
0.85 0.09 0.07
Matches are distributed among these distances:
220 1 0.01
221 28 0.15
222 24 0.13
223 26 0.14
224 2 0.01
225 1 0.01
226 4 0.02
228 95 0.52
ACGTcount: A:0.18, C:0.11, G:0.27, T:0.45
Consensus pattern (221 bp):
TGACTTGTGCAATCATGTGTTGCTTTGAGGCTTTTGTTCAGTAGTTTTTTAGGAGTGCGTGACCA
ATTTTTATATATTACGTTACCTGTTGTAGCGAGAGTGGTGGAACGTGACTTGTGCAATTCATGTG
TTGTTTAGAGGCTTTTGTTCAGTAATGTTTTAGGATTGCATGACTGGTTTTTATATATTACGTGA
CCTATTGTAGCGTGAGTGGTGGAGCA
Found at i:14169210 original size:148 final size:148
Alignment explanation
Indices: 14168928--14169217 Score: 377
Period size: 148 Copynumber: 2.0 Consensus size: 148
14168918 ATTGCGAGAG
* *
14168928 TGGTGGCGCGTGACTTGTGTAATTCATGTGTTGTTTAGAGGCTTTTGTTCAGTAGTGTTTTAGGA
1 TGGTGGAGCATGACTTGTGTAATTCATGTGTTGTTTAGAGGCTTTTGTTCAGTAGTGTTTTAGGA
* * **** * **
14168993 TTTCATTATTGGTTTTTATGTATTACGTGACCTATTGTTATATATTGCGAAAGCGGTGGTGCGTG
66 TTGCATGACCAATTTTTATATATTACGTGACCTATTGTTATATATTGCGAAAGCGGTGGCACGTG
14169058 ACTTGTGCAATTTTCCTC
131 ACTTGTGCAATTTTCCTC
14169076 NTGGTGGAGCATGACTTGTGTAATTCATGTGTTGTTTAGAGGCTTTTGTTC--TAGTGTTTTTAG
1 -TGGTGGAGCATGACTTGTGTAATTCATGTGTTGTTTAGAGGCTTTTGTTCAGTAGTG-TTTTAG
* * * * * * * *
14169139 GGTTGCGTGACCAATTTTTATATATTACGTTACCTGTTGTTATGTATTGCGAGAGTGGTTGCACG
64 GATTGCATGACCAATTTTTATATATTACGTGACCTATTGTTATATATTGCGAAAGCGGTGGCACG
14169204 TGACTTGTGCAATT
129 TGACTTGTGCAATT
14169218 CATGTGTTGT
Statistics
Matches: 121, Mismatches: 19, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
147 5 0.04
148 68 0.56
149 48 0.40
ACGTcount: A:0.18, C:0.12, G:0.27, T:0.43
Consensus pattern (148 bp):
TGGTGGAGCATGACTTGTGTAATTCATGTGTTGTTTAGAGGCTTTTGTTCAGTAGTGTTTTAGGA
TTGCATGACCAATTTTTATATATTACGTGACCTATTGTTATATATTGCGAAAGCGGTGGCACGTG
ACTTGTGCAATTTTCCTC
Found at i:14169285 original size:266 final size:265
Alignment explanation
Indices: 14168811--14169342 Score: 994
Period size: 266 Copynumber: 2.0 Consensus size: 265
14168801 GTAGCGTGAG
14168811 TGGTGGAGCATGACTTGTGTAATTCATGTGTTGTTTAGAGGCTTTTGTTCAGTGTTTTTTAGGGT
1 TGGTGGAGCATGACTTGTGTAATTCATGTGTTGTTTAGAGGCTTTTGTTCAGTGTTTTTTAGGGT
*
14168876 TGCGTGACCAATTTTTATATATTACGTTACCTATTGTTATGTATTGCGAGAGTGGTGGCGCGTGA
66 TGCGTGACCAATTTTTATATATTACGTTACCTATTGTTATGTATTGCGAGAGTGGTGGCACGTGA
*
14168941 CTTGTGTAATTCATGTGTTGTTTAGAGGCTTTTGTTCAGTAGTGTTTTAGGATTTCATTATTGGT
131 CTTGTGCAATTCATGTGTTGTTTAGAGGCTTTTGTTCAGTAGTGTTTTAGGATTTCATTATTGGT
*
14169006 TTTTATGTATTACGTGACCTATTGTTATATATTGCGAAAGCGGTGGTGCGTGACTTGTGCAATTT
196 TTTTATGTATTACGTGACCTATTGTTATATATTGCGAAAGCGGTGGTGCGTGACTTGTGCAATTC
14169071 TCCTC
261 TCCTC
14169076 NTGGTGGAGCATGACTTGTGTAATTCATGTGTTGTTTAGAGGCTTTTGTTCTAGTG-TTTTTAGG
1 -TGGTGGAGCATGACTTGTGTAATTCATGTGTTGTTTAGAGGCTTTTGTTC-AGTGTTTTTTAGG
* *
14169140 GTTGCGTGACCAATTTTTATATATTACGTTACCTGTTGTTATGTATTGCGAGAGTGGTTGCACGT
64 GTTGCGTGACCAATTTTTATATATTACGTTACCTATTGTTATGTATTGCGAGAGTGGTGGCACGT
14169205 GACTTGTGCAATTCATGTGTTGTTTAGAGGCTTTTGTTCAGTAGTGTTTTAGGATTTCATTATTG
129 GACTTGTGCAATTCATGTGTTGTTTAGAGGCTTTTGTTCAGTAGTGTTTTAGGATTTCATTATTG
14169270 GTTTTTATGTATTACGTGACCTATTGTTATATATTGCGAAAGCGGTGGTGCGTGACTTGTGCAAT
194 GTTTTTATGTATTACGTGACCTATTGTTATATATTGCGAAAGCGGTGGTGCGTGACTTGTGCAAT
14169335 TCTCCTC
259 TCTCCTC
14169342 T
1 T
14169343 TGTTTAGGGG
Statistics
Matches: 260, Mismatches: 5, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
265 1 0.00
266 255 0.98
267 4 0.02
ACGTcount: A:0.18, C:0.12, G:0.26, T:0.44
Consensus pattern (265 bp):
TGGTGGAGCATGACTTGTGTAATTCATGTGTTGTTTAGAGGCTTTTGTTCAGTGTTTTTTAGGGT
TGCGTGACCAATTTTTATATATTACGTTACCTATTGTTATGTATTGCGAGAGTGGTGGCACGTGA
CTTGTGCAATTCATGTGTTGTTTAGAGGCTTTTGTTCAGTAGTGTTTTAGGATTTCATTATTGGT
TTTTATGTATTACGTGACCTATTGTTATATATTGCGAAAGCGGTGGTGCGTGACTTGTGCAATTC
TCCTC
Found at i:14169324 original size:118 final size:117
Alignment explanation
Indices: 14169078--14169336 Score: 315
Period size: 118 Copynumber: 2.2 Consensus size: 117
14169068 TTTTCCTCNT
* * *
14169078 GGTGGAGCATGACTTGTGTAATTCATGTGTTGTTTAGAGGCTTTTGTTCTAGTGTTTTTAGGGTT
1 GGTGGAGCGTGACTTGTGCAATTCATGTGTTGTTTAGAGGCTTTTGTTCTAGTGTTTTTAGGATT
* * * * * *
14169143 GCGTGACCAATTTTTATATATTACGTTACCTGTTGTTATGTATTGCGAGAGT
66 GCATGACCAATTTTTATATATTACGTGACCTATTGTTATATATTGCGAAAGC
*
14169195 GGTTGCA-CGTGACTTGTGCAATTCATGTGTTGTTTAGAGGCTTTTGTTC-AGTAGTGTTTTAGG
1 GG-TGGAGCGTGACTTGTGCAATTCATGTGTTGTTTAGAGGCTTTTGTTCTAGT-GT-TTTTAGG
* * **** *
14169258 ATTTCATTATTGGTTTTTATGTATTACGTGACCTATTGTTATATATTGCGAAAGC
63 ATTGCATGACCAATTTTTATATATTACGTGACCTATTGTTATATATTGCGAAAGC
*
14169313 GGTGGTGCGTGACTTGTGCAATTC
1 GGTGGAGCGTGACTTGTGCAATTC
14169337 TCCTCTTGTT
Statistics
Matches: 119, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
116 3 0.03
117 46 0.39
118 70 0.59
ACGTcount: A:0.19, C:0.11, G:0.26, T:0.44
Consensus pattern (117 bp):
GGTGGAGCGTGACTTGTGCAATTCATGTGTTGTTTAGAGGCTTTTGTTCTAGTGTTTTTAGGATT
GCATGACCAATTTTTATATATTACGTGACCTATTGTTATATATTGCGAAAGC
Done.