Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr6
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26303135
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.30
Warning! 1968672 characters in sequence are not A, C, G, or T
File 57 of 66
Found at i:21214024 original size:40 final size:41
Alignment explanation
Indices: 21213960--21214039 Score: 117
Period size: 40 Copynumber: 2.0 Consensus size: 41
21213950 TTGGCTATTC
*
21213960 TTCACCTTAATGGGGCTTTCTAACCTTGTCAAGATTGGTGG
1 TTCACCTTAATGAGGCTTTCTAACCTTGTCAAGATTGGTGG
* * *
21214001 TTCACCTTAGTGAGG-TTTCTAACCTTTTCACGATTGGTG
1 TTCACCTTAATGAGGCTTTCTAACCTTGTCAAGATTGGTG
21214040 TCTTTTACAA
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
40 22 0.63
41 13 0.37
ACGTcount: A:0.19, C:0.20, G:0.23, T:0.39
Consensus pattern (41 bp):
TTCACCTTAATGAGGCTTTCTAACCTTGTCAAGATTGGTGG
Found at i:21215523 original size:5 final size:5
Alignment explanation
Indices: 21215482--21215537 Score: 60
Period size: 5 Copynumber: 10.8 Consensus size: 5
21215472 TTATCTATTT
* *
21215482 TTTTA -TTTA TTATTG TTTAA TTGTTA TTTTCA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TT-TTA TTTTA TT-TTA TTTT-A TTTTA TTTTA TTTTA
21215529 TTTTA TTTT
1 TTTTA TTTT
21215538 TTATATTATC
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
4 4 0.09
5 26 0.60
6 13 0.30
ACGTcount: A:0.20, C:0.02, G:0.04, T:0.75
Consensus pattern (5 bp):
TTTTA
Found at i:21215538 original size:11 final size:11
Alignment explanation
Indices: 21215481--21215538 Score: 50
Period size: 11 Copynumber: 5.5 Consensus size: 11
21215471 ATTATCTATT
21215481 TTTTTA-TTTA
1 TTTTTATTTTA
* * *
21215491 TTATTGTTTAA
1 TTTTTATTTTA
*
21215502 TTGTTATTTTCA
1 TTTTTATTTT-A
21215514 -TTTTATTTTA
1 TTTTTATTTTA
21215524 -TTTTATTTTA
1 TTTTTATTTTA
21215534 TTTTT
1 TTTTT
21215539 TATATTATCA
Statistics
Matches: 38, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
10 15 0.39
11 22 0.58
12 1 0.03
ACGTcount: A:0.19, C:0.02, G:0.03, T:0.76
Consensus pattern (11 bp):
TTTTTATTTTA
Found at i:21215546 original size:27 final size:28
Alignment explanation
Indices: 21215480--21215546 Score: 68
Period size: 27 Copynumber: 2.4 Consensus size: 28
21215470 AATTATCTAT
*
21215480 TTTTTTATTTATTATTGTTTAATTGTTA
1 TTTTTTATTTATTATTATTTAATTGTTA
* *
21215508 -TTTTCATTTTATT-TTATTTTATT-TTA
1 TTTTTTA-TTTATTATTATTTAATTGTTA
21215534 TTTTTTATATTAT
1 TTTTTTAT-TTAT
21215547 CATGTTTTTC
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
26 4 0.12
27 22 0.69
28 6 0.19
ACGTcount: A:0.21, C:0.01, G:0.03, T:0.75
Consensus pattern (28 bp):
TTTTTTATTTATTATTATTTAATTGTTA
Found at i:21215590 original size:15 final size:15
Alignment explanation
Indices: 21215471--21215590 Score: 65
Period size: 15 Copynumber: 8.2 Consensus size: 15
21215461 TGCTAATGCA
21215471 ATTATCTATTTTTT-T
1 ATTAT-TATTTTTTAT
*
21215486 ATTTATTATTGTTTA-
1 A-TTATTATTTTTTAT
* *
21215501 ATTGTTA-TTTTCAT
1 ATTATTATTTTTTAT
* *
21215515 TTTATT-TTATTT-T
1 ATTATTATTTTTTAT
21215528 ATT-TTATTTTTTAT
1 ATTATTATTTTTTAT
* *
21215542 ATTATCATGTTTTTCT
1 ATTATTAT-TTTTTAT
* **
21215558 ATT-CTATTCCTTATT
1 ATTATTATTTTTTA-T
21215573 ATTATTATTTTTTAT
1 ATTATTATTTTTTAT
21215588 ATT
1 ATT
21215591 TTACAATTTA
Statistics
Matches: 75, Mismatches: 20, Indels: 20
0.65 0.17 0.17
Matches are distributed among these distances:
12 2 0.03
13 12 0.16
14 19 0.25
15 22 0.29
16 20 0.27
ACGTcount: A:0.22, C:0.06, G:0.03, T:0.70
Consensus pattern (15 bp):
ATTATTATTTTTTAT
Found at i:21215719 original size:15 final size:14
Alignment explanation
Indices: 21215686--21215754 Score: 52
Period size: 16 Copynumber: 4.6 Consensus size: 14
21215676 GAAAAACTTA
*
21215686 TTTTTATTTTGATTCT
1 TTTTTA-TTT-ATTAT
21215702 TTTTTATCTTATTAT
1 TTTTTAT-TTATTAT
21215717 TTTTT-TTTA-TAT
1 TTTTTATTTATTAT
*
21215729 TTTTGTATTTTTTAT
1 TTTT-TATTTATTAT
21215744 TATTATTATTT
1 T-TT-TTATTT
21215755 TTTCATAGGC
Statistics
Matches: 45, Mismatches: 2, Indels: 12
0.76 0.03 0.20
Matches are distributed among these distances:
12 7 0.16
13 4 0.09
14 4 0.09
15 14 0.31
16 15 0.33
17 1 0.02
ACGTcount: A:0.17, C:0.03, G:0.03, T:0.77
Consensus pattern (14 bp):
TTTTTATTTATTAT
Found at i:21215724 original size:18 final size:18
Alignment explanation
Indices: 21215701--21215757 Score: 64
Period size: 18 Copynumber: 3.2 Consensus size: 18
21215691 ATTTTGATTC
*
21215701 TTTTTTATCTTATTATTT
1 TTTTTTATATTATTATTT
*
21215719 TTTTTTATATT-TT-TGTA
1 TTTTTTATATTATTAT-TT
21215736 TTTTTTATTATTATTATTT
1 TTTTTTA-TATTATTATTT
21215755 TTT
1 TTT
21215758 CATAGGCAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
16 1 0.03
17 10 0.31
18 14 0.44
19 6 0.19
20 1 0.03
ACGTcount: A:0.18, C:0.02, G:0.02, T:0.79
Consensus pattern (18 bp):
TTTTTTATATTATTATTT
Found at i:21215946 original size:17 final size:17
Alignment explanation
Indices: 21215924--21215957 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
21215914 TTGTTTTAAA
*
21215924 ATTTTTTATTATTATTT
1 ATTTTTTAATATTATTT
21215941 ATTTTTTAATATTATTT
1 ATTTTTTAATATTATTT
21215958 TTCTATTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (17 bp):
ATTTTTTAATATTATTT
Found at i:21217023 original size:71 final size:71
Alignment explanation
Indices: 21216907--21217097 Score: 310
Period size: 71 Copynumber: 2.7 Consensus size: 71
21216897 GATAGCTCCT
*
21216907 TCTCTTCCCTGCGTCGGATCTGGTGGTGTGACGGTCGGGCTTCCTCTCTACCATCGATCGGGTAT
1 TCTCTTCCCTGCGTCGGATCTGGTGGCGTGACGGTCGGGCTTCCTCTCTACCATCGATCGGGTAT
21216972 CTCCCC
66 CTCCCC
* *
21216978 TCTCTTCCCTGCGTCGGATCTGGTGGCGTGACGGTCGGGCTTCCTCTCTACCGTCGATCGGGTGT
1 TCTCTTCCCTGCGTCGGATCTGGTGGCGTGACGGTCGGGCTTCCTCTCTACCATCGATCGGGTAT
21217043 CTCCCC
66 CTCCCC
** * * *
21217049 TCTCTTCATTGCGTCGGATCTGGTAGCGCGACGGTCAGGCTTCCTCTCT
1 TCTCTTCCCTGCGTCGGATCTGGTGGCGTGACGGTCGGGCTTCCTCTCT
21217098 TACCGGCGCA
Statistics
Matches: 112, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
71 112 1.00
ACGTcount: A:0.08, C:0.34, G:0.28, T:0.31
Consensus pattern (71 bp):
TCTCTTCCCTGCGTCGGATCTGGTGGCGTGACGGTCGGGCTTCCTCTCTACCATCGATCGGGTAT
CTCCCC
Found at i:21218850 original size:12 final size:11
Alignment explanation
Indices: 21218833--21218922 Score: 59
Period size: 9 Copynumber: 8.4 Consensus size: 11
21218823 ATTTAAGGTG
21218833 ATTTATTATCTT
1 ATTTATTAT-TT
21218845 ATTTATATATTT
1 ATTTAT-TATTT
21218857 A-TTATTA-TT
1 ATTTATTATTT
21218866 A-TTATTATTT
1 ATTTATTATTT
*
21218876 -GTTATTA-TT
1 ATTTATTATTT
21218885 A-TTATTA-TT
1 ATTTATTATTT
*
21218894 ATTATTTTATTT
1 ATT-TATTATTT
*
21218906 TTTTATGTATATT
1 ATTTAT-TAT-TT
21218919 ATTT
1 ATTT
21218923 TAAACAACAA
Statistics
Matches: 65, Mismatches: 4, Indels: 17
0.76 0.05 0.20
Matches are distributed among these distances:
9 20 0.31
10 11 0.17
11 10 0.15
12 16 0.25
13 8 0.12
ACGTcount: A:0.28, C:0.01, G:0.02, T:0.69
Consensus pattern (11 bp):
ATTTATTATTT
Found at i:21218855 original size:8 final size:7
Alignment explanation
Indices: 21218843--21218922 Score: 66
Period size: 6 Copynumber: 11.9 Consensus size: 7
21218833 ATTTATTATC
21218843 TTATTTA
1 TTATTTA
21218850 TATATTTA
1 T-TATTTA
21218858 TTA-TTA
1 TTATTTA
21218864 TTA-TTA
1 TTATTTA
*
21218870 TTATTTG
1 TTATTTA
21218877 TTA-TTA
1 TTATTTA
21218883 TTA-TTA
1 TTATTTA
21218889 TTA-TTA
1 TTATTTA
21218895 TTATTTTA
1 TTA-TTTA
21218903 TT-TTT-
1 TTATTTA
21218908 TTATGTATA
1 TTAT-T-TA
21218917 TTATTT
1 TTATTT
21218923 TAAACAACAA
Statistics
Matches: 63, Mismatches: 2, Indels: 16
0.78 0.02 0.20
Matches are distributed among these distances:
5 2 0.03
6 33 0.52
7 10 0.16
8 14 0.22
9 4 0.06
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.70
Consensus pattern (7 bp):
TTATTTA
Found at i:21218863 original size:3 final size:3
Alignment explanation
Indices: 21218855--21218921 Score: 77
Period size: 3 Copynumber: 22.7 Consensus size: 3
21218845 ATTTATATAT
*
21218855 TTA TTA TTA TTA TTA TTA TTTG TTA TTA TTA TTA TTA TTA TTA TT-
1 TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
21218900 TTA TT- TTT TTA TGTA -TA TTA TT
1 TTA TTA TTA TTA T-TA TTA TTA TT
21218922 TTAAACAACA
Statistics
Matches: 56, Mismatches: 3, Indels: 10
0.81 0.04 0.14
Matches are distributed among these distances:
2 6 0.11
3 46 0.82
4 4 0.07
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (3 bp):
TTA
Found at i:21218880 original size:19 final size:19
Alignment explanation
Indices: 21218833--21218921 Score: 91
Period size: 19 Copynumber: 4.8 Consensus size: 19
21218823 ATTTAAGGTG
*
21218833 ATTTATTA-TCTTATTTATAT
1 ATTTATTATTATTA-TTAT-T
21218853 ATTTATTATTATTATTATT
1 ATTTATTATTATTATTATT
*
21218872 ATTTGTTATTATTATTATT
1 ATTTATTATTATTATTATT
21218891 A-TTATTATT-TTATT-TT
1 ATTTATTATTATTATTATT
21218907 -TTTATGTA-TATTATT
1 ATTTAT-TATTATTATT
21218922 TTAAACAACA
Statistics
Matches: 62, Mismatches: 3, Indels: 11
0.82 0.04 0.14
Matches are distributed among these distances:
16 7 0.11
17 12 0.19
18 7 0.11
19 20 0.32
20 12 0.19
21 4 0.06
ACGTcount: A:0.28, C:0.01, G:0.02, T:0.69
Consensus pattern (19 bp):
ATTTATTATTATTATTATT
Found at i:21218883 original size:22 final size:22
Alignment explanation
Indices: 21218855--21218896 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
21218845 ATTTATATAT
21218855 TTATTATTATTATTATTATTTG
1 TTATTATTATTATTATTATTTG
21218877 TTATTATTATTATTATTATT
1 TTATTATTATTATTATTATT
21218897 ATTTTATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (22 bp):
TTATTATTATTATTATTATTTG
Found at i:21218911 original size:22 final size:25
Alignment explanation
Indices: 21218835--21218924 Score: 93
Period size: 25 Copynumber: 3.7 Consensus size: 25
21218825 TTAAGGTGAT
*
21218835 TTATTA-TCTTATTTATATATTTATTA
1 TTATTATTATTATTT-TATA-TTATTA
21218861 TTATTATTATTATTTGT-TATTATTA
1 TTATTATTATTATTT-TATATTATTA
21218886 TTATTATTATTATTTTAT-TT-TT-
1 TTATTATTATTATTTTATATTATTA
21218908 TTATGTA-TATTATTTTA
1 TTAT-TATTATTATTTTA
21218925 AACAACAATT
Statistics
Matches: 59, Mismatches: 2, Indels: 10
0.83 0.03 0.14
Matches are distributed among these distances:
22 14 0.24
23 4 0.07
24 3 0.05
25 22 0.37
26 8 0.14
27 8 0.14
ACGTcount: A:0.28, C:0.01, G:0.02, T:0.69
Consensus pattern (25 bp):
TTATTATTATTATTTTATATTATTA
Found at i:21219608 original size:20 final size:20
Alignment explanation
Indices: 21219583--21219621 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
21219573 GGTCAGGCTT
21219583 CCTCTCCTGCCGGCGCAAAA
1 CCTCTCCTGCCGGCGCAAAA
* *
21219603 CCTCTCCTGTCTGCGCAAA
1 CCTCTCCTGCCGGCGCAAA
21219622 CCCGAGCCCC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.18, C:0.44, G:0.18, T:0.21
Consensus pattern (20 bp):
CCTCTCCTGCCGGCGCAAAA
Found at i:21229517 original size:6 final size:6
Alignment explanation
Indices: 21229495--21229545 Score: 52
Period size: 6 Copynumber: 8.5 Consensus size: 6
21229485 GTTTGTGAAG
* *
21229495 TTTATG TTTA-T TTTATT TTTATT TTT-TT ATATATTT TTTATT TTTATT
1 TTTATT TTTATT TTTATT TTTATT TTTATT -TTTA-TT TTTATT TTTATT
21229543 TTT
1 TTT
21229546 TTCATTTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
5 6 0.16
6 27 0.71
7 3 0.08
8 2 0.05
ACGTcount: A:0.18, C:0.00, G:0.02, T:0.80
Consensus pattern (6 bp):
TTTATT
Found at i:21229523 original size:25 final size:24
Alignment explanation
Indices: 21229495--21229577 Score: 80
Period size: 25 Copynumber: 3.3 Consensus size: 24
21229485 GTTTGTGAAG
21229495 TTTATGTTTATTTTATTTTTATTTT
1 TTTAT-TTTATTTTATTTTTATTTT
21229520 TTTATATATT-TTTTATTTTTATTTT
1 TTTAT-T-TTATTTTATTTTTATTTT
* *
21229545 TTTCATTTTA-TCTATTTATTGTTTT
1 TTT-ATTTTATTTTATTT-TTATTTT
*
21229570 ATTATTTT
1 TTTATTTT
21229578 TCCTATTTTT
Statistics
Matches: 50, Mismatches: 4, Indels: 9
0.79 0.06 0.14
Matches are distributed among these distances:
24 13 0.26
25 33 0.66
26 4 0.08
ACGTcount: A:0.18, C:0.02, G:0.02, T:0.77
Consensus pattern (24 bp):
TTTATTTTATTTTATTTTTATTTT
Found at i:21229554 original size:31 final size:30
Alignment explanation
Indices: 21229501--21229579 Score: 88
Period size: 31 Copynumber: 2.6 Consensus size: 30
21229491 GAAGTTTATG
*
21229501 TTTATTTTATTTTTATT-TTTTTATATATTT
1 TTTATTTTATTTTT-TTCATTTTATATATTT
*
21229531 TTTATTTTTATTTTTTTCATTTTATCTATTT
1 TTTA-TTTTATTTTTTTCATTTTATATATTT
* *
21229562 ATTGTTTTATTATTTTTC
1 TTTATTTTATT-TTTTTC
21229580 CTATTTTTGA
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
30 13 0.31
31 29 0.69
ACGTcount: A:0.18, C:0.04, G:0.01, T:0.77
Consensus pattern (30 bp):
TTTATTTTATTTTTTTCATTTTATATATTT
Found at i:21229562 original size:22 final size:20
Alignment explanation
Indices: 21229530--21229569 Score: 53
Period size: 22 Copynumber: 1.9 Consensus size: 20
21229520 TTTATATATT
*
21229530 TTTTATTTTTATTTTTTTCA
1 TTTTATTTTTATTGTTTTCA
21229550 TTTTATCTATTTATTGTTTT
1 TTTTAT-T-TTTATTGTTTT
21229570 ATTATTTTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
21 1 0.06
22 10 0.59
ACGTcount: A:0.15, C:0.05, G:0.03, T:0.78
Consensus pattern (20 bp):
TTTTATTTTTATTGTTTTCA
Found at i:21229570 original size:8 final size:8
Alignment explanation
Indices: 21229502--21229577 Score: 56
Period size: 8 Copynumber: 9.9 Consensus size: 8
21229492 AAGTTTATGT
21229502 TTATTTTA
1 TTATTTTA
21229510 -T-TTTTA
1 TTATTTTA
*
21229516 TTTTTTTA
1 TTATTTTA
21229524 TATATTTT-
1 T-TATTTTA
21229532 TTATTTTTA
1 TTA-TTTTA
21229541 TT-TTTT-
1 TTATTTTA
*
21229547 TCATTTTA
1 TTATTTTA
21229555 TCTA-TTTA
1 T-TATTTTA
*
21229563 TTGTTTTA
1 TTATTTTA
21229571 TTATTTT
1 TTATTTT
21229578 TCCTATTTTT
Statistics
Matches: 54, Mismatches: 5, Indels: 18
0.70 0.06 0.23
Matches are distributed among these distances:
6 6 0.11
7 13 0.24
8 27 0.50
9 8 0.15
ACGTcount: A:0.18, C:0.03, G:0.01, T:0.78
Consensus pattern (8 bp):
TTATTTTA
Found at i:21229825 original size:22 final size:20
Alignment explanation
Indices: 21229794--21229845 Score: 70
Period size: 22 Copynumber: 2.5 Consensus size: 20
21229784 TGGTATTTTG
21229794 TATTTTTTATTTTAT-TACTA
1 TATTTTTTATTTTATATA-TA
21229814 TTATTATTTTATTTTATATATA
1 -TATT-TTTTATTTTATATATA
21229836 TATTTTTTAT
1 TATTTTTTAT
21229846 ATGGACTTCA
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
20 6 0.21
21 8 0.28
22 13 0.45
23 2 0.07
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (20 bp):
TATTTTTTATTTTATATATA
Found at i:21231281 original size:22 final size:23
Alignment explanation
Indices: 21231237--21231282 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
21231227 CTGCCAGTAC
* *
21231237 TTTTTTTTCTTTCTTTTTTTAAT
1 TTTTTTTTCTTTCTGTTTCTAAT
*
21231260 TTTTTTTTGTTTC-GTTTCTAAT
1 TTTTTTTTCTTTCTGTTTCTAAT
21231282 T
1 T
21231283 ATTTAATTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.09, C:0.09, G:0.04, T:0.78
Consensus pattern (23 bp):
TTTTTTTTCTTTCTGTTTCTAAT
Found at i:21241101 original size:12 final size:13
Alignment explanation
Indices: 21241084--21241112 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
21241074 GGTTTCTACC
21241084 CATTAAAACA-TA
1 CATTAAAACATTA
21241096 CATTAAAACATTA
1 CATTAAAACATTA
21241109 CATT
1 CATT
21241113 TCATCATTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.52, C:0.17, G:0.00, T:0.31
Consensus pattern (13 bp):
CATTAAAACATTA
Found at i:21242066 original size:3 final size:3
Alignment explanation
Indices: 21242058--21242085 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
21242048 TACAGGAGTA
21242058 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
21242086 TAAGAACTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:21246859 original size:49 final size:49
Alignment explanation
Indices: 21246787--21246886 Score: 182
Period size: 49 Copynumber: 2.0 Consensus size: 49
21246777 TATCCGAGAA
*
21246787 ACTTACCTTCGCAAATTCGACAAATAATTCCCATCATCGGAGTCATCGT
1 ACTTACCTTCGCAAATTCAACAAATAATTCCCATCATCGGAGTCATCGT
*
21246836 ACTTACCTTCGCAAATTCAACAAATAATTCTCATCATCGGAGTCATCGT
1 ACTTACCTTCGCAAATTCAACAAATAATTCCCATCATCGGAGTCATCGT
21246885 AC
1 AC
21246887 ATTTTCTTTT
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.32, C:0.28, G:0.11, T:0.29
Consensus pattern (49 bp):
ACTTACCTTCGCAAATTCAACAAATAATTCCCATCATCGGAGTCATCGT
Found at i:21247192 original size:5 final size:5
Alignment explanation
Indices: 21247174--21247203 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
21247164 ATTGTTTAAT
21247174 TTTTA TTTTCA TTTTA TTTTA TTTTA TTTT
1 TTTTA TTTT-A TTTTA TTTTA TTTTA TTTT
21247204 TTATATTATC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 19 0.79
6 5 0.21
ACGTcount: A:0.17, C:0.03, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:21247387 original size:17 final size:17
Alignment explanation
Indices: 21247367--21247422 Score: 67
Period size: 17 Copynumber: 3.2 Consensus size: 17
21247357 ATTTTGATTC
*
21247367 TTTTTTATCTTATTATT
1 TTTTTTATATTATTATT
* * *
21247384 TTTTTTATATTGTTGTA
1 TTTTTTATATTATTATT
21247401 TTTTTTATTATTATTATT
1 TTTTTTA-TATTATTATT
21247419 TTTT
1 TTTT
21247423 CATAGGCAAA
Statistics
Matches: 31, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
17 20 0.65
18 11 0.35
ACGTcount: A:0.18, C:0.02, G:0.04, T:0.77
Consensus pattern (17 bp):
TTTTTTATATTATTATT
Found at i:21247611 original size:17 final size:18
Alignment explanation
Indices: 21247589--21247623 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
21247579 TTGTTTTAAA
*
21247589 ATTTTTTATTATT-TTTT
1 ATTTTTTAATATTATTTT
21247606 ATTTTTTAATATTATTTT
1 ATTTTTTAATATTATTTT
21247624 TCTATTTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (18 bp):
ATTTTTTAATATTATTTT
Found at i:21247618 original size:20 final size:22
Alignment explanation
Indices: 21247595--21247637 Score: 72
Period size: 20 Copynumber: 2.0 Consensus size: 22
21247585 TAAAATTTTT
21247595 TATTATTTTT-TATTT-TTTAA
1 TATTATTTTTCTATTTATTTAA
21247615 TATTATTTTTCTATTTATTTAA
1 TATTATTTTTCTATTTATTTAA
21247637 T
1 T
21247638 GTCTTGTATA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 10 0.48
21 5 0.24
22 6 0.29
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (22 bp):
TATTATTTTTCTATTTATTTAA
Found at i:21248703 original size:71 final size:71
Alignment explanation
Indices: 21248570--21248750 Score: 240
Period size: 71 Copynumber: 2.5 Consensus size: 71
21248560 ACCGACAGCT
* * * * * * *
21248570 CCCTCTCTTCCCTACGCCGGATCTGGTGGCACGACGGTCGGGCTTCCTTTCTTCCGCAGATCGGG
1 CCCTCTCTTCTCTGCGTCGGATCTGGTGGCACGACGGTCGGACTTCATCTCTACCGCAGATCGGG
21248635 TATCTC
66 TATCTC
21248641 CCCTCTCTTCTCTGCGTCGGATCTGGTGGCACGACGGTCGGACTTCATCTCTACCGTC-GATCGG
1 CCCTCTCTTCTCTGCGTCGGATCTGGTGGCACGACGGTCGGACTTCATCTCTACCG-CAGATCGG
*
21248705 GTGTCTC
65 GTATCTC
* *
21248712 CCCTCTCTTCAT-TGCGTCGGATCTGGTAGCGCGACGGTC
1 CCCTCTCTTC-TCTGCGTCGGATCTGGTGGCACGACGGTC
21248751 AGGCTTCCTC
Statistics
Matches: 98, Mismatches: 10, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
71 96 0.98
72 2 0.02
ACGTcount: A:0.10, C:0.35, G:0.27, T:0.29
Consensus pattern (71 bp):
CCCTCTCTTCTCTGCGTCGGATCTGGTGGCACGACGGTCGGACTTCATCTCTACCGCAGATCGGG
TATCTC
Found at i:21248782 original size:20 final size:20
Alignment explanation
Indices: 21248757--21248795 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
21248747 GGTCAGGCTT
21248757 CCTCTCCTGCCGGCGCAAAA
1 CCTCTCCTGCCGGCGCAAAA
* *
21248777 CCTCTCCTGTCTGCGCAAA
1 CCTCTCCTGCCGGCGCAAA
21248796 CCCGAGCCCC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.18, C:0.44, G:0.18, T:0.21
Consensus pattern (20 bp):
CCTCTCCTGCCGGCGCAAAA
Found at i:21250756 original size:291 final size:290
Alignment explanation
Indices: 21250232--21250797 Score: 1098
Period size: 291 Copynumber: 1.9 Consensus size: 290
21250222 TTCCTTTTCA
21250232 TCTTTTGAGAGTGTATGTAAATGTTGTAGCATATAGAACAATATTTGATACTTTACAGAACATAG
1 TCTTTTGAGAGTGTATGTAAATGTTGTAGCATATAGAACAATATTTGATACTTTACAGAACATAG
21250297 AGTGATTTAGAGAGATGTGAAAAGATGGTTTCCCCAAATAACAGATAAGAATTTAATGGCTTCTG
66 AGTGATTTAGAGAGATGTGAAAAGATGGTTTCCCCAAATAACAGATAAGAATTTAATGGCTTCTG
21250362 GTTCTTGTCTTAGCAATTGTTTCTCATTCGTTTCAAAAACCATGGAGGAGGGTTGTGATAACAAA
131 GTTCTTGTCTTAGCAATTGTTTCTCATTCGTTTCAAAAACCATGGAGGAGGGTTGTGATAACAAA
21250427 ATGGAGAAAATGGAAAAATTGAACTAGACCTTAATGTTTGGTCAGGGTTTTATTTG-TTTTTTTT
196 ATGGAGAAAATGGAAAAATTGAACTAGACCTTAATGTTTGGTCAGGGTTTT-TTTGTTTTTTTTT
21250491 TTTTTTTAATATATTTTTTAAGAATTATCGC
260 TTTTTTTAATATATTTTTTAAGAATTATCGC
21250522 NTCTTTTGAGAGTGTATGTAAATGTTGTAGCATATAGAACAATATTTGATACTTTACAGAACATA
1 -TCTTTTGAGAGTGTATGTAAATGTTGTAGCATATAGAACAATATTTGATACTTTACAGAACATA
21250587 GAGTGATTTAGAGAGATGTGAAAAGATGGTTTCCCCAAATAACAGATAAGAATTTAATGGCTTCT
65 GAGTGATTTAGAGAGATGTGAAAAGATGGTTTCCCCAAATAACAGATAAGAATTTAATGGCTTCT
21250652 GGTTCTTGTCTTAGCAATTGTTTCTCATTCGTTTCAAAAACCATGGAGGAGGGTTGTGATAACAA
130 GGTTCTTGTCTTAGCAATTGTTTCTCATTCGTTTCAAAAACCATGGAGGAGGGTTGTGATAACAA
21250717 AATGGAGAAAATGGAAAAATTGAACTAGACCTTAATGTTTGGTCAGGGTTTTTTTGTTTTTTTTT
195 AATGGAGAAAATGGAAAAATTGAACTAGACCTTAATGTTTGGTCAGGGTTTTTTTGTTTTTTTTT
*
21250782 TTTTTTTTATATATTT
260 TTTTTTTAATATATTT
21250798 GTTAGATTTC
Statistics
Matches: 273, Mismatches: 1, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
290 4 0.01
291 269 0.99
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.39
Consensus pattern (290 bp):
TCTTTTGAGAGTGTATGTAAATGTTGTAGCATATAGAACAATATTTGATACTTTACAGAACATAG
AGTGATTTAGAGAGATGTGAAAAGATGGTTTCCCCAAATAACAGATAAGAATTTAATGGCTTCTG
GTTCTTGTCTTAGCAATTGTTTCTCATTCGTTTCAAAAACCATGGAGGAGGGTTGTGATAACAAA
ATGGAGAAAATGGAAAAATTGAACTAGACCTTAATGTTTGGTCAGGGTTTTTTTGTTTTTTTTTT
TTTTTTAATATATTTTTTAAGAATTATCGC
Found at i:21258698 original size:29 final size:29
Alignment explanation
Indices: 21258645--21258723 Score: 92
Period size: 29 Copynumber: 2.7 Consensus size: 29
21258635 TATTGAGCAA
*
21258645 TTTAAATATTAATAGTT-TTAA-TTAAAATT
1 TTTAAAAATTAA-A-TTATTAATTTAAAATT
*
21258674 TTTTAAAATTAAA-TATTAATNTTAAAATT
1 TTTAAAAATTAAATTATTAAT-TTAAAATT
21258703 TTTAAAAATTAAATTATTAAT
1 TTTAAAAATTAAATTATTAAT
21258724 ATATTTTTTT
Statistics
Matches: 43, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
26 1 0.02
27 4 0.09
28 1 0.02
29 30 0.70
30 7 0.16
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.49
Consensus pattern (29 bp):
TTTAAAAATTAAATTATTAATTTAAAATT
Found at i:21262447 original size:27 final size:27
Alignment explanation
Indices: 21262417--21262471 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
21262407 GTTCTTCCTT
*
21262417 AGGTAATCCCAAATCCCATATCTGATG
1 AGGTAATCCCAAATCCAATATCTGATG
* *
21262444 AGGTAATCTCGAATCCAATATCTGATG
1 AGGTAATCCCAAATCCAATATCTGATG
21262471 A
1 A
21262472 ATCCTATGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.27
Consensus pattern (27 bp):
AGGTAATCCCAAATCCAATATCTGATG
Found at i:21262490 original size:33 final size:33
Alignment explanation
Indices: 21262448--21262515 Score: 84
Period size: 33 Copynumber: 2.1 Consensus size: 33
21262438 CTGATGAGGT
* *
21262448 AATCTCGAATC-CAATATCTGATGAATCCTATGA
1 AATCCCGAATCTC-ATATCTGATGAATCCCATGA
* *
21262481 AATCCCGAATCTCATATTTGATGAGTCCCATGA
1 AATCCCGAATCTCATATCTGATGAATCCCATGA
21262514 AA
1 AA
21262516 CACATGTTCC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
33 29 0.97
34 1 0.03
ACGTcount: A:0.35, C:0.22, G:0.13, T:0.29
Consensus pattern (33 bp):
AATCCCGAATCTCATATCTGATGAATCCCATGA
Found at i:21273495 original size:2 final size:2
Alignment explanation
Indices: 21273488--21273519 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
21273478 TATTATATGA
21273488 AT AT AT AT AT AT AT -T AT AT AT AT -T AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
21273520 GTACGCGTAC
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
1 2 0.07
2 26 0.93
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:21273507 original size:9 final size:9
Alignment explanation
Indices: 21273478--21273519 Score: 57
Period size: 9 Copynumber: 4.3 Consensus size: 9
21273468 ATTTAATTTT
21273478 TATTATATGAA
1 TATTATAT--A
21273489 TATATATATA
1 TAT-TATATA
21273499 TATTATATA
1 TATTATATA
21273508 TATTATATA
1 TATTATATA
21273517 TAT
1 TAT
21273520 GTACGCGTAC
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
9 18 0.60
10 4 0.13
11 3 0.10
12 5 0.17
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (9 bp):
TATTATATA
Found at i:21290536 original size:2 final size:2
Alignment explanation
Indices: 21290529--21290558 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
21290519 TATTGATTTC
21290529 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
21290559 TGTTATTGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:21304193 original size:24 final size:24
Alignment explanation
Indices: 21304166--21304213 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
21304156 TATTGAGAAG
21304166 GTTCTATATATAGAGATAAGTGAC
1 GTTCTATATATAGAGATAAGTGAC
21304190 GTTCTATATATAGAGATAAGTGAC
1 GTTCTATATATAGAGATAAGTGAC
21304214 ATCATGTCAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.08, G:0.21, T:0.33
Consensus pattern (24 bp):
GTTCTATATATAGAGATAAGTGAC
Found at i:21307837 original size:41 final size:41
Alignment explanation
Indices: 21307777--21307858 Score: 110
Period size: 41 Copynumber: 2.0 Consensus size: 41
21307767 CACTAGATAT
* * * *
21307777 AAATCAAGACTTCAGGTCCCTTTTTACCTATTTGTGGGAAC
1 AAATCAAGACTTCAAGTCCCCTTTTACCTACTCGTGGGAAC
* *
21307818 AAATCAGGGCTTCAAGTCCCCTTTTACCTACTCGTGGGAAC
1 AAATCAAGACTTCAAGTCCCCTTTTACCTACTCGTGGGAAC
21307859 TTCCTACATT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (41 bp):
AAATCAAGACTTCAAGTCCCCTTTTACCTACTCGTGGGAAC
Found at i:21307949 original size:60 final size:60
Alignment explanation
Indices: 21307818--21307949 Score: 176
Period size: 60 Copynumber: 2.2 Consensus size: 60
21307808 TTGTGGGAAC
* * * * * *
21307818 AAATCAGGGCTTCAAGTCCCCTTTTACCTACTCGTGGGAACTTCCTACATTACCAAATAT
1 AAATCAGAGCTTAAAGTCCCCTTTTACCTACTCGTAGGAACTACCCACATCACCAAATAT
* *
21307878 AAATC-GAAGCTTAAAGTCTCCTTTTACCTACTCGTAGGAACTACCCACGTCACCAAATAT
1 AAATCAG-AGCTTAAAGTCCCCTTTTACCTACTCGTAGGAACTACCCACATCACCAAATAT
21307938 AAATCAGAGCTT
1 AAATCAGAGCTT
21307950 TAGGTTTCCA
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
59 1 0.02
60 60 0.97
61 1 0.02
ACGTcount: A:0.32, C:0.27, G:0.13, T:0.28
Consensus pattern (60 bp):
AAATCAGAGCTTAAAGTCCCCTTTTACCTACTCGTAGGAACTACCCACATCACCAAATAT
Found at i:21309380 original size:6 final size:6
Alignment explanation
Indices: 21309366--21309395 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
21309356 GCGGCGCCGG
*
21309366 GAAGAA GAAGGA GAAGGA GAAGGA GAAGGA
1 GAAGGA GAAGGA GAAGGA GAAGGA GAAGGA
21309396 AAGAAAGAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (6 bp):
GAAGGA
Found at i:21310090 original size:20 final size:19
Alignment explanation
Indices: 21310065--21310103 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
21310055 ATTACTAAAT
21310065 AAAATTAATTTAATCGTTTA
1 AAAATTAA-TTAATCGTTTA
*
21310085 AAAATTAATTAATTGTTTA
1 AAAATTAATTAATCGTTTA
21310104 TTTGATAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.46, C:0.03, G:0.05, T:0.46
Consensus pattern (19 bp):
AAAATTAATTAATCGTTTA
Found at i:21317261 original size:17 final size:17
Alignment explanation
Indices: 21317239--21317275 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
21317229 AAGTCAAGTT
21317239 TGCTTAGATGTAATGGG
1 TGCTTAGATGTAATGGG
21317256 TGCTTAGATGTAATGGG
1 TGCTTAGATGTAATGGG
21317273 TGC
1 TGC
21317276 CCACTTGGAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.22, C:0.08, G:0.35, T:0.35
Consensus pattern (17 bp):
TGCTTAGATGTAATGGG
Found at i:21320557 original size:2 final size:2
Alignment explanation
Indices: 21320546--21320640 Score: 101
Period size: 2 Copynumber: 48.0 Consensus size: 2
21320536 ATTTTATCAC
21320546 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
21320586 GTNC TT TA T- TA CTA CTA TA -A TA TA TA TA TA TA TA TA TA TA TA
1 -T-A TA TA TA TA -TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA
21320628 TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA
21320641 AAGGTGAGCT
Statistics
Matches: 82, Mismatches: 3, Indels: 16
0.81 0.03 0.16
Matches are distributed among these distances:
1 5 0.06
2 71 0.87
3 6 0.07
ACGTcount: A:0.46, C:0.03, G:0.01, T:0.48
Consensus pattern (2 bp):
TA
Found at i:21324667 original size:2 final size:2
Alignment explanation
Indices: 21324662--21324702 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
21324652 TCCTTCTCTC
21324662 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
21324703 GAAATTGCAC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:21332996 original size:14 final size:14
Alignment explanation
Indices: 21332972--21333007 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
21332962 TAATTTTAAC
21332972 AAAAA-TTATAAAA
1 AAAAATTTATAAAA
*
21332985 AAGAATTTATAAAA
1 AAAAATTTATAAAA
21332999 AAAAATTTA
1 AAAAATTTA
21333008 CCAAACAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (14 bp):
AAAAATTTATAAAA
Found at i:21334591 original size:223 final size:225
Alignment explanation
Indices: 21334253--21334699 Score: 589
Period size: 223 Copynumber: 2.0 Consensus size: 225
21334243 TATATGTAAA
21334253 TATAATATATTACTTTATTATATATATAAAATTAATGACACAACTTATACGTTATAATATTTTAA
1 TATAATATATTACTTTATTATATATATAAAATTAATGACACAACTTATACGTTATAATA--TT-A
* * *
21334318 TTTTTATATCAAAGTTTATATAAATAATAATTAATTATAAATAATATGTTATAAAAATTAAGACG
63 GTTTTATATCAAAGTTTATATAAATAATAATTAATTATAAACAATATGTTATAAAAACTAAGACG
* *
21334383 ATAACTAATAAAATTATTAAGTGTAATAATATAAATAAAGTCTATTATAAGTCACAGTAATATTT
128 ATAACTAATAAAATTATTAAGTATAATAATATAAATAAAGTCTATTATAAGTCACAGTAATACTT
* *
21334448 ATGTATCAATTAAATATATATATATATATATACG
193 ATATATAAATTAAATATATAT-TATATATATACG
* * * *
21334482 TATAATATATTACTTTATTATGTATATATGAAATTAATGGCACAATTTATATGTTAT-A-A-T-G
1 TATAATATATTACTTTATTA--TATATATAAAATTAATGACACAACTTATACGTTATAATATTAG
* **
21334543 TTTTATATCAAAGTTTGTAT-AATAATAATTAATTATAAACAATATGTTATAAAAACTAAGGTGA
64 TTTTATATCAAAGTTTATATAAATAATAATTAATTATAAACAATATGTTATAAAAACTAAGACGA
* ** * * * * * *
21334607 TAATTAATAAGGTTATTAAGTATAATCATATAAATTAAGTTTATTATAAGTTATAGTAATGCTTA
129 TAACTAATAAAATTATTAAGTATAATAATATAAATAAAGTCTATTATAAGTCACAGTAATACTTA
*
21334672 TATATAAATTAAATATATATTATTTATA
194 TATATAAATTAAATATATATTATATATA
21334700 CAATTATATA
Statistics
Matches: 192, Mismatches: 24, Indels: 11
0.85 0.11 0.05
Matches are distributed among these distances:
222 7 0.04
223 112 0.58
224 19 0.10
226 1 0.01
229 21 0.11
230 1 0.01
231 31 0.16
ACGTcount: A:0.46, C:0.05, G:0.07, T:0.42
Consensus pattern (225 bp):
TATAATATATTACTTTATTATATATATAAAATTAATGACACAACTTATACGTTATAATATTAGTT
TTATATCAAAGTTTATATAAATAATAATTAATTATAAACAATATGTTATAAAAACTAAGACGATA
ACTAATAAAATTATTAAGTATAATAATATAAATAAAGTCTATTATAAGTCACAGTAATACTTATA
TATAAATTAAATATATATTATATATATACG
Found at i:21334732 original size:22 final size:23
Alignment explanation
Indices: 21334678--21334721 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
21334668 CTTATATATA
* *
21334678 AATTAAATATATATTATTTATAC
1 AATTATATATATATTATTCATAC
21334701 AATTATATATATA-TATTCATA
1 AATTATATATATATTATTCATA
21334722 ATATTTTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (23 bp):
AATTATATATATATTATTCATAC
Found at i:21336050 original size:11 final size:11
Alignment explanation
Indices: 21336036--21336065 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
21336026 TAAAATGGAA
21336036 AAAAAAAAAAG
1 AAAAAAAAAAG
*
21336047 AAAAAGAAAAG
1 AAAAAAAAAAG
21336058 AAAAAAAA
1 AAAAAAAA
21336066 TCACTGATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:21336794 original size:21 final size:21
Alignment explanation
Indices: 21336768--21336830 Score: 68
Period size: 21 Copynumber: 3.3 Consensus size: 21
21336758 TATTGGTAGG
21336768 ATATTATTGAGTTCAGGGCCT
1 ATATTATTGAGTTCAGGGCCT
21336789 ATATTACTTG-G-T-A-GG---
1 ATATTA-TTGAGTTCAGGGCCT
21336804 ATATTATTGAGTTCAGGGCCT
1 ATATTATTGAGTTCAGGGCCT
21336825 ATATTA
1 ATATTA
21336831 CTCTCATCCT
Statistics
Matches: 34, Mismatches: 0, Indels: 16
0.68 0.00 0.32
Matches are distributed among these distances:
14 3 0.09
15 7 0.21
16 1 0.03
17 1 0.03
18 4 0.12
19 1 0.03
20 1 0.03
21 13 0.38
22 3 0.09
ACGTcount: A:0.27, C:0.11, G:0.22, T:0.40
Consensus pattern (21 bp):
ATATTATTGAGTTCAGGGCCT
Found at i:21336800 original size:36 final size:36
Alignment explanation
Indices: 21336760--21336832 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
21336750 GGAGGGGTTA
21336760 TTGGTAGGATATTATTGAGTTCAGGGCCTATATTAC
1 TTGGTAGGATATTATTGAGTTCAGGGCCTATATTAC
21336796 TTGGTAGGATATTATTGAGTTCAGGGCCTATATTAC
1 TTGGTAGGATATTATTGAGTTCAGGGCCTATATTAC
21336832 T
1 T
21336833 CTCATCCTGC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.25, C:0.11, G:0.25, T:0.40
Consensus pattern (36 bp):
TTGGTAGGATATTATTGAGTTCAGGGCCTATATTAC
Found at i:21360794 original size:15 final size:16
Alignment explanation
Indices: 21360774--21360819 Score: 69
Period size: 15 Copynumber: 3.0 Consensus size: 16
21360764 AAAAAATCAA
21360774 AAAATAATAATA-AAT
1 AAAATAATAATATAAT
21360789 AAAATAATAA-ATAAT
1 AAAATAATAATATAAT
*
21360804 AACATAATAATATAAT
1 AAAATAATAATATAAT
21360820 TGTAATAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
14 1 0.04
15 22 0.79
16 5 0.18
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (16 bp):
AAAATAATAATATAAT
Found at i:21360797 original size:8 final size:8
Alignment explanation
Indices: 21360774--21360819 Score: 51
Period size: 8 Copynumber: 6.0 Consensus size: 8
21360764 AAAAAATCAA
21360774 AAAATAAT
1 AAAATAAT
*
21360782 AATA-AAT
1 AAAATAAT
21360789 AAAATAAT
1 AAAATAAT
21360797 -AAATAAT
1 AAAATAAT
*
21360804 AACATAAT
1 AAAATAAT
*
21360812 AATATAAT
1 AAAATAAT
21360820 TGTAATAAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
7 13 0.41
8 19 0.59
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (8 bp):
AAAATAAT
Found at i:21361168 original size:13 final size:12
Alignment explanation
Indices: 21361152--21361186 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
21361142 TAGAAAACCA
21361152 AAAAATAAAATAT
1 AAAAATAAAA-AT
21361165 AAAAATAAAAAT
1 AAAAATAAAAAT
21361177 AAATAATAAA
1 AAA-AATAAA
21361187 TAATCCAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 5 0.24
13 16 0.76
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (12 bp):
AAAAATAAAAAT
Found at i:21368191 original size:664 final size:656
Alignment explanation
Indices: 21366599--21368197 Score: 2018
Period size: 664 Copynumber: 2.4 Consensus size: 656
21366589 TATTGAAGCA
* *
21366599 AACAAATTAATGAATTATGATCAAT----AAAAAAAAGAGTAATAACAAAAAACATAGAATGTTC
1 AACAAATTAATGAATTATGATCAATAAAAAAAAAAAAGAGTAATAACAAAAAACATAGAATCTTA
* * *
21366660 TCAAACTGATGGAAAGCAGAAAAACCAAACAACAGAATTTCCA-AAAAGAAAAAA-TAGCAAATA
66 TCAAACTGATGGAAAGCAGAAAAACCAAACAACACAATTTACAGAAAA-AAAAAAGCAGCAAATA
* * * *
21366723 GTATTGGAAAAAGTAAAAGT-TTCTCTTACAAATAAAAAGAATCAACTATAATATCAAAACAGGA
130 GTATT-GAAAAGGTAAAAGTCTT-TCTTACAAATAAAAACAATTAACTATAATATCAAAACA-AA
* * * *
21366787 AAAACAAACCATC-ATAATCAATCAAGCCATAAAAACAATAATAAACAAAAAATAAACCTTTCGA
192 AAAAAAAACCATCGATAATCAATCAAGGCAAAAAAACAATAATAAACAAAAATTAAACCTTTCGA
* * *
21366851 GAGTGATGAAATAGAAAAACATCAACATTAATTCCATCATAATAAAAAATTAAAGAAAGCATACA
257 AAGTGAAG-AATAGAAAAACACCAACATTAATTCCATCATAATAAAAAATTAAAGAAAGCATACA
* * *
21366916 ATGTATTAACCGCACAGTTCAAACCTACAGAATATACCAATCAATATTTGAAAATTAACAAAAAA
321 ATGTATTAACCACACAGTTCAAACCTACAGAATATAACAATAAATATTTGAAAATTAACAAAAAA
** * * * * *
21366981 AATGCAAAAAAAAGGGGAAAAGCTGAAACACTTTATATTTAAGTATCTTGTAATGAAAATTGATG
386 AAAACAAAAAAAAGGGAAAAAACTGAAACACTTCATATTTAAGTATCTTATAATGAAAACTGATG
* *
21367046 AAAATCAAAATCATATCAAATAACCAAAAGAATAAACTACTAAAGAAAAAACATGTATCGTTATT
451 AAAATCAAAATCATATCAAATAACCAAAAGAATAAACTACTAAAGAAAAAACAGGTATCGCTATT
* * * * *
21367111 AGTTAAAGGACAATGAAAGCATCACAGAAAAACTTACTCAAAGAAAATAAACAATTTCTGCAGCT
516 ACTTAAAGCACAATGAAAGCATAACAGAAAAACTAACTCAAAGAAAACAAACAATTTCTGCAGCT
*
21367176 GATATGTATGGTCAAACTAAATGTTATATCCACAGAAAAGCAACAAAAGATAGGAGAAAATTATA
581 GATATGTATGGTCAAACTAAATGTTATATCCACAGAAAAGCAACAAAACATAGGAGAAAATTATA
*
21367241 CTATTCAATGG
646 CCATTCAATGG
* *
21367252 AACAAATTAATGAATCATGATCAA-ACAAAAAAAAAAAGAGCAATAACAAAAAACATAGAATCTT
1 AACAAATTAATGAATTATGATCAATA-AAAAAAAAAAAGAGTAATAACAAAAAACATAGAATCTT
* * ** *
21367316 TTCAAACTGATGGAAAGCAGAAAAACCAAACAGCACAATTTACAG-AAACGAAAAGCAGGAAATA
65 ATCAAACTGATGGAAAGCAGAAAAACCAAACAACACAATTTACAGAAAAAAAAAAGCAGCAAATA
* *
21367380 GTATTTGAAGAGGTAAAAGTCTCTCTTACAAATAAAAACAATTAACTATAATATCAAAACAAAAA
130 GTA-TTGAAAAGGTAAAAGTCTTTCTTACAAATAAAAACAATTAACTATAATATCAAAAC----A
* * * ** ** * *
21367445 AAAAAAACAAACCATTG-TAATCAACCAAGGGAAATGAACAATAATTTATAAAAATGAAGACCTT
190 AAAAAAA-AAACCATCGATAATCAATCAAGGCAAAAAAACAATAATAAACAAAAATTAA-ACCTT
*
21367509 TC-AATAGTGATGGAATAGAAAAACACCAACATTAATTCCATCATAATAAAAAATTAAAGAAAGC
253 TCGAA-AGTGA-AGAATAGAAAAACACCAACATTAATTCCATCATAATAAAAAATTAAAGAAAGC
** * * *
21367573 ATACCCTGTATTAATCACACAGCTT-AAACCTACA-AACTGTAACAATAAATATTTTAAAATTAA
316 ATACAATGTATTAACCACACAG-TTCAAACCTACAGAA-TATAACAATAAATATTTGAAAATTAA
* * * *
21367636 CAGAATAAAAAAATATAAAAAAA-GGAAAAAATTGAAACGCTTCATATTTAAGTTTCTTATAATG
379 CA-AA-AAAAAAACA-AAAAAAAGGGAAAAAACTGAAACACTTCATATTTAAGTATCTTATAATG
* * * *
21367700 AAAACTGATGAAAATCAAAATCATATGAAATAAGCAAAAGAATAAACTATTAAAGAAAAAAGAGG
441 AAAACTGATGAAAATCAAAATCATATCAAATAACCAAAAGAATAAACTACTAAAGAAAAAACAGG
21367765 TATCGCTATTACTTAAAGCACAATGAAAGCATAACAGAAAAACTAACTCAAAGAAAACAAACAAT
506 TATCGCTATTACTTAAAGCACAATGAAAGCATAACAGAAAAACTAACTCAAAGAAAACAAACAAT
* * *
21367830 TTTTGCAGCTTATATGTATGGTCAAACTAAATGTTATATGCACACAG-AAA-TAACAAAACATA-
571 TTCTGCAGCTGATATGTATGGTCAAACTAAATGTTATAT-C-CACAGAAAAGCAACAAAACATAG
21367892 GA-AAAATATCATACCATTCAA-GAG
634 GAGAAAAT-T-ATACCATTCAATG-G
* * *
21367916 AACAAATTAATGAATTATAATCAATAAAAAAACAAAAAAGAATAATAAC-TAAAACATAGAATCT
1 AACAAATTAATGAATTATGATCAAT-AAAAAA-AAAAAAGAGTAATAACAAAAAACATAGAATCT
* * *
21367980 TATCAAACTGATGGAAAG-TGCAAAAACCAAATAACCCAATTTACAGAAAAAAAAAAGCAGCAAA
64 TATCAAACTGATGGAAAGCAG-AAAAACCAAACAACACAATTTACAGAAAAAAAAAAGCAGCAAA
* * *
21368044 GAGTATTGCAAAAGGTAAAAGTCTTTCTTACAAATAAAAACAATTAACTACAATATGAAAACAAA
128 TAGTATTG-AAAAGGTAAAAGTCTTTCTTACAAATAAAAACAATTAACTATAATATCAAAACAAA
*
21368109 AAAAAATGAACCATCGATAATCAATCAAGGCAAAAAAACAATTATAAACAAAAATTAACACCTTT
192 AAAAAA--AACCATCGATAATCAATCAAGGCAAAAAAACAATAATAAACAAAAATTAA-ACCTTT
*
21368174 CGAAAGTGACAGAATAGAAGAACA
254 CGAAAGTGA-AGAATAGAAAAACA
21368198 GAAAACAACA
Statistics
Matches: 808, Mismatches: 100, Indels: 65
0.83 0.10 0.07
Matches are distributed among these distances:
653 23 0.03
656 4 0.00
657 133 0.16
658 3 0.00
660 5 0.01
661 42 0.05
662 126 0.16
663 16 0.02
664 295 0.37
665 74 0.09
666 87 0.11
ACGTcount: A:0.54, C:0.14, G:0.11, T:0.22
Consensus pattern (656 bp):
AACAAATTAATGAATTATGATCAATAAAAAAAAAAAAGAGTAATAACAAAAAACATAGAATCTTA
TCAAACTGATGGAAAGCAGAAAAACCAAACAACACAATTTACAGAAAAAAAAAAGCAGCAAATAG
TATTGAAAAGGTAAAAGTCTTTCTTACAAATAAAAACAATTAACTATAATATCAAAACAAAAAAA
AAAACCATCGATAATCAATCAAGGCAAAAAAACAATAATAAACAAAAATTAAACCTTTCGAAAGT
GAAGAATAGAAAAACACCAACATTAATTCCATCATAATAAAAAATTAAAGAAAGCATACAATGTA
TTAACCACACAGTTCAAACCTACAGAATATAACAATAAATATTTGAAAATTAACAAAAAAAAAAC
AAAAAAAAGGGAAAAAACTGAAACACTTCATATTTAAGTATCTTATAATGAAAACTGATGAAAAT
CAAAATCATATCAAATAACCAAAAGAATAAACTACTAAAGAAAAAACAGGTATCGCTATTACTTA
AAGCACAATGAAAGCATAACAGAAAAACTAACTCAAAGAAAACAAACAATTTCTGCAGCTGATAT
GTATGGTCAAACTAAATGTTATATCCACAGAAAAGCAACAAAACATAGGAGAAAATTATACCATT
CAATGG
Found at i:21370253 original size:18 final size:19
Alignment explanation
Indices: 21370210--21370248 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
21370200 AAAGAAAAGT
21370210 AAACTTTTTTTAATTGGAA
1 AAACTTTTTTTAATTGGAA
21370229 AAACTTTTTTTAATTGGAA
1 AAACTTTTTTTAATTGGAA
21370248 A
1 A
21370249 CCTTTGTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.38, C:0.05, G:0.10, T:0.46
Consensus pattern (19 bp):
AAACTTTTTTTAATTGGAA
Found at i:21370535 original size:30 final size:31
Alignment explanation
Indices: 21370499--21370573 Score: 93
Period size: 30 Copynumber: 2.5 Consensus size: 31
21370489 ATAGGGAGCA
*
21370499 CCAAAGGGAGGAGAGCACT-GGTTGGTGCTC
1 CCAAAGGGAGGAGAGCACTAGATTGGTGCTC
* * *
21370529 CCAAAGGAAAG-GAGTACTAGATTGGTGCTC
1 CCAAAGGGAGGAGAGCACTAGATTGGTGCTC
21370559 CC-AAGGGAGGAGAGC
1 CCAAAGGGAGGAGAGC
21370574 TTCATTGCTC
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
29 12 0.33
30 24 0.67
ACGTcount: A:0.29, C:0.19, G:0.37, T:0.15
Consensus pattern (31 bp):
CCAAAGGGAGGAGAGCACTAGATTGGTGCTC
Found at i:21381765 original size:19 final size:19
Alignment explanation
Indices: 21381734--21381782 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
21381724 GTTACGGTGG
*
21381734 GGTGT-TTTGGTTGCTGTAA
1 GGTGTCTTT-GTTGCTGCAA
*
21381753 GGTGTCTTTGTTGCTGCAG
1 GGTGTCTTTGTTGCTGCAA
21381772 GGTG-CTTTGTT
1 GGTGTCTTTGTT
21381783 TAATCTACTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
18 7 0.26
19 17 0.63
20 3 0.11
ACGTcount: A:0.06, C:0.10, G:0.37, T:0.47
Consensus pattern (19 bp):
GGTGTCTTTGTTGCTGCAA
Found at i:21400358 original size:13 final size:13
Alignment explanation
Indices: 21400340--21400372 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
21400330 ATGGCTGCAA
*
21400340 GCTCTTGGAGCAT
1 GCTCTTCGAGCAT
21400353 GCTCTTCGAGCAT
1 GCTCTTCGAGCAT
21400366 GCTCTTC
1 GCTCTTC
21400373 AATTTAATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.12, C:0.30, G:0.24, T:0.33
Consensus pattern (13 bp):
GCTCTTCGAGCAT
Found at i:21410279 original size:136 final size:135
Alignment explanation
Indices: 21410034--21410305 Score: 526
Period size: 136 Copynumber: 2.0 Consensus size: 135
21410024 TTAACATTTT
21410034 ACATTGTGGATAATTGAAACATTTTATGTGGTGGAGAGAGATTGCTCAATGGATAAGTATTACAC
1 ACATTGTGGATAATTGAAACATTTTATGTGGTGGAGAGAGATTGCTCAATGGATAAGTATTACAC
*
21410099 ATGGACCAATGGAAACATGCCATGTGTCAAGCTTGGATTATTCTAGAATTTCCTTGTAAAATCTA
66 ATGGACCAATGGAAACATGCCATGTGTCAAGCTTGGATCATTCTAGAATTTCCTTGTAAAATCTA
21410164 TTTAA
131 TTTAA
21410169 ANCATTGTGGATAATTGAAACATTTTATGTGGTGGAGAGAGATTGCTCAATGGATAAGTATTACA
1 A-CATTGTGGATAATTGAAACATTTTATGTGGTGGAGAGAGATTGCTCAATGGATAAGTATTACA
21410234 CATGGACCAATGGAAACATGCCATGTGTCAAGCTTGGATCATTCTAGAATTTCCTTGTAAAATCT
65 CATGGACCAATGGAAACATGCCATGTGTCAAGCTTGGATCATTCTAGAATTTCCTTGTAAAATCT
21410299 ATTTAA
130 ATTTAA
21410305 A
1 A
21410306 ACTATTTTAG
Statistics
Matches: 135, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
135 1 0.01
136 134 0.99
ACGTcount: A:0.33, C:0.13, G:0.21, T:0.33
Consensus pattern (135 bp):
ACATTGTGGATAATTGAAACATTTTATGTGGTGGAGAGAGATTGCTCAATGGATAAGTATTACAC
ATGGACCAATGGAAACATGCCATGTGTCAAGCTTGGATCATTCTAGAATTTCCTTGTAAAATCTA
TTTAA
Found at i:21422435 original size:19 final size:16
Alignment explanation
Indices: 21422400--21422470 Score: 63
Period size: 16 Copynumber: 4.3 Consensus size: 16
21422390 TATTTTAAAA
**
21422400 TAAATAAAATAAAAAT
1 TAAATAAAATATTAAT
21422416 TAATCATAATAATATTAAT
1 TAA--ATAA-AATATTAAT
21422435 TAAATAAAATATTAAT
1 TAAATAAAATATTAAT
* * *
21422451 T-ATTAATATTTTAAT
1 TAAATAAAATATTAAT
21422466 TAAAT
1 TAAAT
21422471 TCTAGATATT
Statistics
Matches: 45, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
15 12 0.27
16 15 0.33
17 4 0.09
18 4 0.09
19 10 0.22
ACGTcount: A:0.58, C:0.01, G:0.00, T:0.41
Consensus pattern (16 bp):
TAAATAAAATATTAAT
Found at i:21422465 original size:31 final size:31
Alignment explanation
Indices: 21422371--21422470 Score: 101
Period size: 35 Copynumber: 3.0 Consensus size: 31
21422361 ATATTAATAT
* *
21422371 TAAAATTATCAATTATTAATATTTTAAAATAAA
1 TAAAA-TATAAATTATTAATATTTT-AATTAAA
* *
21422404 TAAAATAAAAATTAATCATAATAATATTAATTAAA
1 TAAAATATAAATT-AT--TAAT-ATTTTAATTAAA
*
21422439 TAAAATATTAATTATTAATATTTTAATTAAA
1 TAAAATATAAATTATTAATATTTTAATTAAA
21422470 T
1 T
21422471 TCTAGATATT
Statistics
Matches: 56, Mismatches: 7, Indels: 10
0.77 0.10 0.14
Matches are distributed among these distances:
31 12 0.21
32 10 0.18
33 7 0.12
34 2 0.04
35 21 0.38
36 4 0.07
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (31 bp):
TAAAATATAAATTATTAATATTTTAATTAAA
Found at i:21422468 original size:35 final size:35
Alignment explanation
Indices: 21422371--21422468 Score: 89
Period size: 30 Copynumber: 2.9 Consensus size: 35
21422361 ATATTAATAT
* *
21422371 TAAAATTATCAATTATTAATATTTTAAAATAAATAAAA
1 TAAAA-TATTAATTATTAATATTTT--AATTAATAAAA
* * *
21422409 TAAAA-ATTAATCA-TAATA--AT-ATTAATTAAA
1 TAAAATATTAATTATTAATATTTTAATTAATAAAA
21422439 TAAAATATTAATTATTAATATTTTAATTAA
1 TAAAATATTAATTATTAATATTTTAATTAA
21422469 ATTCTAGATA
Statistics
Matches: 48, Mismatches: 7, Indels: 13
0.71 0.10 0.19
Matches are distributed among these distances:
30 13 0.27
31 7 0.15
32 5 0.10
33 1 0.02
34 1 0.02
35 10 0.21
36 6 0.12
38 5 0.10
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (35 bp):
TAAAATATTAATTATTAATATTTTAATTAATAAAA
Found at i:21424639 original size:2 final size:2
Alignment explanation
Indices: 21424632--21424671 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
21424622 CTCTTAGATA
21424632 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
21424672 GCTGAAATGA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:21427116 original size:6 final size:6
Alignment explanation
Indices: 21427105--21427133 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
21427095 ACATCTTGAC
21427105 CCCCTA CCCCTA CCCCTA CCCCTA CCCCT
1 CCCCTA CCCCTA CCCCTA CCCCTA CCCCT
21427134 CCTTTCTCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.14, C:0.69, G:0.00, T:0.17
Consensus pattern (6 bp):
CCCCTA
Found at i:21430032 original size:29 final size:28
Alignment explanation
Indices: 21430000--21430069 Score: 86
Period size: 29 Copynumber: 2.4 Consensus size: 28
21429990 CTCGTATACT
*
21430000 TATTCATGTACAGCTTATTCTCTTGTACC
1 TATTC-TGTACAGCTTATTCTCTCGTACC
* *
21430029 TATTCTCATACAGCTTCTTCTCTCGTACC
1 TATTCT-GTACAGCTTATTCTCTCGTACC
21430058 TATTCTTGTACA
1 TATTC-TGTACA
21430070 CCTCTTTTCT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
28 1 0.03
29 33 0.94
30 1 0.03
ACGTcount: A:0.20, C:0.27, G:0.09, T:0.44
Consensus pattern (28 bp):
TATTCTGTACAGCTTATTCTCTCGTACC
Found at i:21436823 original size:29 final size:30
Alignment explanation
Indices: 21436791--21436854 Score: 87
Period size: 29 Copynumber: 2.2 Consensus size: 30
21436781 CTCGTATACT
*
21436791 TATTCAT-GTACAGCTTATTCTCTTGTACC
1 TATTCATCATACAGCTTATTCTCTTGTACC
*
21436820 TATTC-TCATACAGCTTCTTCTCTTGTACC
1 TATTCATCATACAGCTTATTCTCTTGTACC
*
21436849 TTTTCA
1 TATTCA
21436855 CGTGTACCTC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
28 1 0.03
29 29 0.97
ACGTcount: A:0.19, C:0.27, G:0.08, T:0.47
Consensus pattern (30 bp):
TATTCATCATACAGCTTATTCTCTTGTACC
Found at i:21437099 original size:13 final size:13
Alignment explanation
Indices: 21437081--21437105 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
21437071 ACTTGAGAGC
21437081 TTCTCTCTCTAAA
1 TTCTCTCTCTAAA
21437094 TTCTCTCTCTAA
1 TTCTCTCTCTAA
21437106 TTATCTTGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.32, G:0.00, T:0.48
Consensus pattern (13 bp):
TTCTCTCTCTAAA
Found at i:21441535 original size:14 final size:15
Alignment explanation
Indices: 21441510--21441538 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
21441500 TAAATTTTAA
21441510 TAATTAATTATTGAT
1 TAATTAATTATTGAT
21441525 TAATT-ATTATTGAT
1 TAATTAATTATTGAT
21441539 CAAAATCTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (15 bp):
TAATTAATTATTGAT
Found at i:21442773 original size:13 final size:13
Alignment explanation
Indices: 21442753--21442787 Score: 54
Period size: 13 Copynumber: 2.7 Consensus size: 13
21442743 TTTAATAAAA
21442753 AAATTTTTA-TTT
1 AAATTTTTACTTT
21442765 AAATATTTTACTTT
1 AAAT-TTTTACTTT
21442779 AAATTTTTA
1 AAATTTTTA
21442788 AACTTATTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 4 0.19
13 10 0.48
14 7 0.33
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (13 bp):
AAATTTTTACTTT
Found at i:21450576 original size:25 final size:24
Alignment explanation
Indices: 21450522--21450573 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
21450512 GTGTGGAGCA
21450522 TCTTCTGATCTTTAGCACCGTTTT
1 TCTTCTGATCTTTAGCACCGTTTT
21450546 TCTTCTGATCTTTAGCACCGTTTT
1 TCTTCTGATCTTTAGCACCGTTTT
21450570 TCTT
1 TCTT
21450574 TCTTGTACCG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.12, C:0.25, G:0.12, T:0.52
Consensus pattern (24 bp):
TCTTCTGATCTTTAGCACCGTTTT
Found at i:21469445 original size:22 final size:20
Alignment explanation
Indices: 21469407--21469467 Score: 74
Period size: 18 Copynumber: 3.1 Consensus size: 20
21469397 ATTTTTATTT
21469407 TATTTTA-TTTAATTAAATA
1 TATTTTATTTTAATTAAATA
21469426 TATATTTATTTTAAATTAAATA
1 TAT-TTTATTTT-AATTAAATA
*
21469448 -ATTTT-TTATAATTAAATA
1 TATTTTATTTTAATTAAATA
21469466 TA
1 TA
21469468 ATCTAATTAC
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
18 9 0.24
19 7 0.19
20 7 0.19
21 5 0.14
22 9 0.24
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (20 bp):
TATTTTATTTTAATTAAATA
Found at i:21469717 original size:28 final size:29
Alignment explanation
Indices: 21469665--21469719 Score: 85
Period size: 28 Copynumber: 1.9 Consensus size: 29
21469655 TATGATTTAA
21469665 AATAAAAATATAAAAAATTAATTAAAAAT
1 AATAAAAATATAAAAAATTAATTAAAAAT
* *
21469694 AATAAAAATA-AAAAATTTATTTAAAA
1 AATAAAAATATAAAAAATTAATTAAAA
21469720 TTTTAAAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 14 0.58
29 10 0.42
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (29 bp):
AATAAAAATATAAAAAATTAATTAAAAAT
Found at i:21469719 original size:27 final size:27
Alignment explanation
Indices: 21469659--21469730 Score: 92
Period size: 27 Copynumber: 2.7 Consensus size: 27
21469649 AATTTATATG
*
21469659 ATTTAAAATAA-AAATATAAAAAATTA
1 ATTTAAAATAATAAAAATAAAAAATTA
* *
21469685 ATTAAAAATAATAAAAATAAAAAATTT
1 ATTTAAAATAATAAAAATAAAAAATTA
**
21469712 ATTTAAAATTTTAAAAATA
1 ATTTAAAATAATAAAAATA
21469731 TTATACTATT
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
26 10 0.26
27 29 0.74
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (27 bp):
ATTTAAAATAATAAAAATAAAAAATTA
Found at i:21470057 original size:2 final size:2
Alignment explanation
Indices: 21470050--21470090 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
21470040 ATTTTTATCC
21470050 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
21470091 CCCATTTTGT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:21472020 original size:2 final size:2
Alignment explanation
Indices: 21472013--21472041 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
21472003 CTCTAAATAT
21472013 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
21472042 TCTAGAATGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:21480552 original size:6 final size:6
Alignment explanation
Indices: 21480541--21480568 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
21480531 TATTGGCTTG
21480541 TTTTAT TTTTAT TTTTAT TTTTAT TTTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTT
21480569 TTCAGCTTGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTAT
Found at i:21483124 original size:33 final size:33
Alignment explanation
Indices: 21483082--21483148 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
21483072 TTCAGCTTTA
21483082 TCCCGGTGCCGGTTTAGACCTCTTACAAATAGC
1 TCCCGGTGCCGGTTTAGACCTCTTACAAATAGC
*
21483115 TCCCGGTGCCGGTTTAGACCTCTTATAAATAGC
1 TCCCGGTGCCGGTTTAGACCTCTTACAAATAGC
21483148 T
1 T
21483149 GAAATTTGTC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.21, C:0.28, G:0.21, T:0.30
Consensus pattern (33 bp):
TCCCGGTGCCGGTTTAGACCTCTTACAAATAGC
Found at i:21495578 original size:131 final size:132
Alignment explanation
Indices: 21495426--21495692 Score: 500
Period size: 131 Copynumber: 2.0 Consensus size: 132
21495416 AAGAAGCTCA
*
21495426 AAAGAAAAGATAAAATATTCGGACTAAATTTAGGAGCAAACACAGATAAAGATATGACCTTTATG
1 AAAGAAAAGATAAAATATTCGGACTAAATTTAGGAGCAAACACAGATAAAAATATGACCTTTATG
21495491 AGAATCTTGAGCATATATTAAGCTAAAACTTACCTATAAACAATGGCGGAGCTGGGATGGAGGAC
66 AGAATCTTGAGCATATATTAAGCTAAAACTTACCTATAAACAATGGCGGAGCTGGGATGGAGGAC
21495556 TC
131 TC
*
21495558 AAAGAAAAG-TAAAATATTCGGACTAAATTTAGGAGCAAACCCAGATAAAAATATGACCTTTATG
1 AAAGAAAAGATAAAATATTCGGACTAAATTTAGGAGCAAACACAGATAAAAATATGACCTTTATG
*
21495622 AGAATCTTGAGCATATATTAAGCTAAAACTTACCTATAAACAATGGTGGAGCTGGGATGGAGGAC
66 AGAATCTTGAGCATATATTAAGCTAAAACTTACCTATAAACAATGGCGGAGCTGGGATGGAGGAC
21495687 TC
131 TC
21495689 AAAG
1 AAAG
21495693 TCAAGCCTTT
Statistics
Matches: 132, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
131 123 0.93
132 9 0.07
ACGTcount: A:0.43, C:0.13, G:0.20, T:0.24
Consensus pattern (132 bp):
AAAGAAAAGATAAAATATTCGGACTAAATTTAGGAGCAAACACAGATAAAAATATGACCTTTATG
AGAATCTTGAGCATATATTAAGCTAAAACTTACCTATAAACAATGGCGGAGCTGGGATGGAGGAC
TC
Found at i:21500373 original size:78 final size:78
Alignment explanation
Indices: 21500244--21500400 Score: 314
Period size: 78 Copynumber: 2.0 Consensus size: 78
21500234 CATGACATAA
21500244 TATGCTTGTAGTGTATTTGTAGAGACAGGCATTATTCTGATACAACAAAGAGCATAGTGAAGTGA
1 TATGCTTGTAGTGTATTTGTAGAGACAGGCATTATTCTGATACAACAAAGAGCATAGTGAAGTGA
21500309 CCAACATTACAAC
66 CCAACATTACAAC
21500322 TATGCTTGTAGTGTATTTGTAGAGACAGGCATTATTCTGATACAACAAAGAGCATAGTGAAGTGA
1 TATGCTTGTAGTGTATTTGTAGAGACAGGCATTATTCTGATACAACAAAGAGCATAGTGAAGTGA
21500387 CCAACATTACAAC
66 CCAACATTACAAC
21500400 T
1 T
21500401 TTGTTATTCT
Statistics
Matches: 79, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
78 79 1.00
ACGTcount: A:0.36, C:0.15, G:0.20, T:0.29
Consensus pattern (78 bp):
TATGCTTGTAGTGTATTTGTAGAGACAGGCATTATTCTGATACAACAAAGAGCATAGTGAAGTGA
CCAACATTACAAC
Found at i:21533868 original size:5 final size:5
Alignment explanation
Indices: 21533858--21533885 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
21533848 ACTTTGATTA
21533858 GAAAT GAAAT GAAAT GAAAT GAAAT GAA
1 GAAAT GAAAT GAAAT GAAAT GAAAT GAA
21533886 TTTTAAATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.61, C:0.00, G:0.21, T:0.18
Consensus pattern (5 bp):
GAAAT
Found at i:21536424 original size:27 final size:27
Alignment explanation
Indices: 21536386--21536448 Score: 126
Period size: 27 Copynumber: 2.3 Consensus size: 27
21536376 AATGAAGCAT
21536386 GGCCCTGATTGAACCCCAAGGATGAGG
1 GGCCCTGATTGAACCCCAAGGATGAGG
21536413 GGCCCTGATTGAACCCCAAGGATGAGG
1 GGCCCTGATTGAACCCCAAGGATGAGG
21536440 GGCCCTGAT
1 GGCCCTGAT
21536449 AATTGATACT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.24, C:0.27, G:0.33, T:0.16
Consensus pattern (27 bp):
GGCCCTGATTGAACCCCAAGGATGAGG
Found at i:21552964 original size:14 final size:14
Alignment explanation
Indices: 21552945--21552975 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
21552935 AGTTGTTTGG
*
21552945 TAAATTTTTTTTTA
1 TAAATTCTTTTTTA
21552959 TAAATTCTTTTTTA
1 TAAATTCTTTTTTA
21552973 TAA
1 TAA
21552976 GTTATACTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (14 bp):
TAAATTCTTTTTTA
Found at i:21553183 original size:12 final size:13
Alignment explanation
Indices: 21553160--21553188 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
21553150 TTATTCTTAA
21553160 AAAAATATTTTTT
1 AAAAATATTTTTT
21553173 AAAAATA-TTTTT
1 AAAAATATTTTTT
21553185 AAAA
1 AAAA
21553189 TATCATATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.56
13 7 0.44
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (13 bp):
AAAAATATTTTTT
Found at i:21554619 original size:14 final size:15
Alignment explanation
Indices: 21554590--21554624 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
21554580 ATATCATATG
*
21554590 AATAAATAGTATAAA
1 AATAAATAGAATAAA
21554605 AATAAATA-AATAAA
1 AATAAATAGAATAAA
21554619 AATAAA
1 AATAAA
21554625 AATAATAACA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 11 0.58
15 8 0.42
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (15 bp):
AATAAATAGAATAAA
Found at i:21554625 original size:20 final size:20
Alignment explanation
Indices: 21554600--21554638 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
21554590 AATAAATAGT
21554600 ATAAAAATAAATAA-ATAAAA
1 ATAAAAAT-AATAACATAAAA
21554620 ATAAAAATAATAACATAAA
1 ATAAAAATAATAACATAAA
21554639 TTGAAAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.21
Consensus pattern (20 bp):
ATAAAAATAATAACATAAAA
Found at i:21555472 original size:22 final size:21
Alignment explanation
Indices: 21555421--21555473 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 21
21555411 TTCAATTGAT
* *
21555421 ATTATTTTTATTTATTTATTT
1 ATTACTTTTATTTATTTATTC
21555442 ATTACTTTTATTCTATTTATTC
1 ATTACTTTTATT-TATTTATTC
21555464 ATATA-TTTTA
1 AT-TACTTTTA
21555474 AATTTTTATA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
21 11 0.39
22 15 0.54
23 2 0.07
ACGTcount: A:0.26, C:0.06, G:0.00, T:0.68
Consensus pattern (21 bp):
ATTACTTTTATTTATTTATTC
Found at i:21555867 original size:11 final size:12
Alignment explanation
Indices: 21555842--21555880 Score: 62
Period size: 11 Copynumber: 3.2 Consensus size: 12
21555832 TATTTAATAT
21555842 TATAAATATAAA
1 TATAAATATAAA
21555854 TATAAATA-AAA
1 TATAAATATAAA
21555865 TATAAATATTAAA
1 TATAAATA-TAAA
21555878 TAT
1 TAT
21555881 TAACTATATT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.44
12 8 0.32
13 6 0.24
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (12 bp):
TATAAATATAAA
Found at i:21555867 original size:17 final size:18
Alignment explanation
Indices: 21555845--21555879 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
21555835 TTAATATTAT
21555845 AAATATAAATA-TAAATA
1 AAATATAAATATTAAATA
21555862 AAATATAAATATTAAATA
1 AAATATAAATATTAAATA
21555880 TTAACTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
AAATATAAATATTAAATA
Found at i:21555883 original size:7 final size:6
Alignment explanation
Indices: 21555842--21555880 Score: 62
Period size: 6 Copynumber: 6.5 Consensus size: 6
21555832 TATTTAATAT
21555842 TATAAA TATAAA TATAAA TA-AAA TATAAA TATTAAA TAT
1 TATAAA TATAAA TATAAA TATAAA TATAAA TA-TAAA TAT
21555881 TAACTATATT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
5 5 0.16
6 20 0.65
7 6 0.19
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (6 bp):
TATAAA
Found at i:21565620 original size:2 final size:2
Alignment explanation
Indices: 21565615--21565639 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
21565605 TTTTTTTAGT
21565615 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
21565640 GTCAAATACC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:21575070 original size:5 final size:5
Alignment explanation
Indices: 21575060--21575085 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
21575050 GTCAGAAAGT
21575060 TTTTA TTTTA TTTTA TTTTA TTTTA T
1 TTTTA TTTTA TTTTA TTTTA TTTTA T
21575086 CATAACGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:21583557 original size:2 final size:2
Alignment explanation
Indices: 21583550--21583578 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
21583540 TTGTTAAATG
21583550 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
21583579 TAAAGTTTCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:21592115 original size:7 final size:7
Alignment explanation
Indices: 21592103--21592135 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
21592093 AGAGAGGCAG
21592103 AGTTGCA
1 AGTTGCA
21592110 AGTTGCA
1 AGTTGCA
21592117 AGTTGCA
1 AGTTGCA
21592124 AGTTGCA
1 AGTTGCA
21592131 AGTTG
1 AGTTG
21592136 GCTACCATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.27, C:0.12, G:0.30, T:0.30
Consensus pattern (7 bp):
AGTTGCA
Found at i:21622303 original size:2 final size:2
Alignment explanation
Indices: 21622296--21622384 Score: 101
Period size: 2 Copynumber: 44.5 Consensus size: 2
21622286 TGAGGTGCAC
* * * *
21622296 AG AG AG AG AA AG CG AG AG AG GG CAG CG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG -AG AG AG AG AG AG AG AG AG AG
*
21622339 AG AG AG AG AG AG -G AG GG AG AG A- AG NAG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG -AG AG AG AG AG AG AG AG
21622380 AG AG A
1 AG AG A
21622385 AGGGGTAAAG
Statistics
Matches: 73, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
1 2 0.03
2 68 0.93
3 3 0.04
ACGTcount: A:0.46, C:0.03, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:21629728 original size:18 final size:18
Alignment explanation
Indices: 21629690--21629724 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
21629680 AATTAATTAG
*
21629690 AATAATTATAAATAATTT
1 AATAATGATAAATAATTT
21629708 AATAATGAT-AATAATTT
1 AATAATGATAAATAATTT
21629725 TAATTTCTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (18 bp):
AATAATGATAAATAATTT
Found at i:21634601 original size:3 final size:3
Alignment explanation
Indices: 21634593--21634638 Score: 83
Period size: 3 Copynumber: 15.3 Consensus size: 3
21634583 GATTCAGTGC
*
21634593 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AGG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
21634639 TGAGGATGAA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:21634643 original size:9 final size:9
Alignment explanation
Indices: 21634593--21634649 Score: 60
Period size: 9 Copynumber: 6.3 Consensus size: 9
21634583 GATTCAGTGC
*
21634593 AAGAAGAAG
1 AAGAGGAAG
*
21634602 AAGAAGAAG
1 AAGAGGAAG
*
21634611 AAGAAGAAG
1 AAGAGGAAG
*
21634620 AAGAAGAAG
1 AAGAGGAAG
21634629 AAGAGGAAG
1 AAGAGGAAG
* *
21634638 ATGAGGATG
1 AAGAGGAAG
21634647 AAG
1 AAG
21634650 TTATGAGTTC
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 44 1.00
ACGTcount: A:0.60, C:0.00, G:0.37, T:0.04
Consensus pattern (9 bp):
AAGAGGAAG
Found at i:21635306 original size:2 final size:2
Alignment explanation
Indices: 21635299--21635340 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
21635289 TATCTACTAG
21635299 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
21635341 TCAAACAGCT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:21636481 original size:2 final size:2
Alignment explanation
Indices: 21636474--21636503 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
21636464 AAATAAATAA
21636474 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
21636504 GAATATGGTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:21648314 original size:2 final size:2
Alignment explanation
Indices: 21648307--21648331 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
21648297 AAAATTGAAA
21648307 AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG A
21648332 TTGCAATCCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:21654043 original size:42 final size:42
Alignment explanation
Indices: 21653984--21654070 Score: 156
Period size: 42 Copynumber: 2.1 Consensus size: 42
21653974 GAATCAAACT
* *
21653984 CACAAAAACCATGGATAATAGAATAAATTTATGCACAAGTGG
1 CACAAAAACCATAGATAATAGAATAAATTTATGCACAACTGG
21654026 CACAAAAACCATAGATAATAGAATAAATTTATGCACAACTGG
1 CACAAAAACCATAGATAATAGAATAAATTTATGCACAACTGG
21654068 CAC
1 CAC
21654071 CAAAGAGGGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.48, C:0.17, G:0.14, T:0.21
Consensus pattern (42 bp):
CACAAAAACCATAGATAATAGAATAAATTTATGCACAACTGG
Found at i:21656613 original size:49 final size:49
Alignment explanation
Indices: 21656524--21656619 Score: 138
Period size: 49 Copynumber: 2.0 Consensus size: 49
21656514 CATTAGCAGA
* * * *
21656524 TGAAAAATGGCAAAGAACAGAGACCATAGCATAGTATATGACAAGCATG
1 TGAAAAATGGCAAAGAAAAGAGACCAAAACAAAGTATATGACAAGCATG
* *
21656573 TGAAAAATGGCAAAGAAAAGAGACCAAAACAAAGTGTATGATAAGCA
1 TGAAAAATGGCAAAGAAAAGAGACCAAAACAAAGTATATGACAAGCA
21656620 ACTTACTGCT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
49 41 1.00
ACGTcount: A:0.51, C:0.12, G:0.22, T:0.15
Consensus pattern (49 bp):
TGAAAAATGGCAAAGAAAAGAGACCAAAACAAAGTATATGACAAGCATG
Found at i:21670208 original size:7 final size:8
Alignment explanation
Indices: 21670189--21670219 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
21670179 GCTTGAGTTG
*
21670189 AAAAAATT
1 AAAAAAAT
21670197 AAAAAAAT
1 AAAAAAAT
21670205 AAAAAAAT
1 AAAAAAAT
21670213 AAAAAAA
1 AAAAAAA
21670220 GAGAAAGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (8 bp):
AAAAAAAT
Found at i:21688101 original size:31 final size:30
Alignment explanation
Indices: 21688063--21688146 Score: 107
Period size: 30 Copynumber: 2.8 Consensus size: 30
21688053 AAATATATGA
* * *
21688063 ATTAAATTGAATAAAACTTTATAGT-GTAGAG
1 ATTAAATTGAATAAAATTTTATAATACT-G-G
*
21688094 ATTAAATTGAACAAAATTTTATAATACTGG
1 ATTAAATTGAATAAAATTTTATAATACTGG
21688124 ATTAAATTGAATAAAATTTTATA
1 ATTAAATTGAATAAAATTTTATA
21688147 TTAGAGGGAC
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
30 23 0.49
31 23 0.49
32 1 0.02
ACGTcount: A:0.48, C:0.04, G:0.11, T:0.38
Consensus pattern (30 bp):
ATTAAATTGAATAAAATTTTATAATACTGG
Found at i:21707356 original size:2 final size:2
Alignment explanation
Indices: 21707349--21707399 Score: 102
Period size: 2 Copynumber: 25.5 Consensus size: 2
21707339 ATTAATGTGT
21707349 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
21707391 TA TA TA TA T
1 TA TA TA TA T
21707400 TGAATAGCAT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:21709871 original size:25 final size:25
Alignment explanation
Indices: 21709843--21709893 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
21709833 TTTTATTTTG
21709843 AATTAAATAGATCATTA-TAATTAAT
1 AATTAAATA-ATCATTATTAATTAAT
* *
21709868 AATTAATTAATTATTATTAATTAAT
1 AATTAAATAATCATTATTAATTAAT
21709893 A
1 A
21709894 TACTATTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 6 0.26
25 17 0.74
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (25 bp):
AATTAAATAATCATTATTAATTAAT
Found at i:21710020 original size:19 final size:20
Alignment explanation
Indices: 21709992--21710033 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
21709982 TTATGATGAA
21709992 TAAAAAAA-TTAAAATTTTT
1 TAAAAAAATTTAAAATTTTT
* *
21710011 TAAAATAATTTAAGATTTTT
1 TAAAAAAATTTAAAATTTTT
21710031 TAA
1 TAA
21710034 GTATTATGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (20 bp):
TAAAAAAATTTAAAATTTTT
Found at i:21710695 original size:2 final size:2
Alignment explanation
Indices: 21710688--21710726 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
21710678 TTTTCTGTTT
*
21710688 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TT TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
21710727 TAAATTCGGG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.00, C:0.46, G:0.00, T:0.54
Consensus pattern (2 bp):
TC
Found at i:21726073 original size:31 final size:33
Alignment explanation
Indices: 21726037--21726105 Score: 81
Period size: 32 Copynumber: 2.2 Consensus size: 33
21726027 GGGGAGAAAC
* * * *
21726037 TATAAAAT-TTTTAAA-AAATCAAGGATAAAAT
1 TATAAAATGTTTAAAACAAAACAAAGAAAAAAT
21726068 TAT-AAATGTTTAAAACAAAACAAAGAAAAAAT
1 TATAAAATGTTTAAAACAAAACAAAGAAAAAAT
21726100 TATAAA
1 TATAAA
21726106 CTTTCGAAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
30 4 0.13
31 9 0.29
32 16 0.52
33 2 0.06
ACGTcount: A:0.62, C:0.04, G:0.06, T:0.28
Consensus pattern (33 bp):
TATAAAATGTTTAAAACAAAACAAAGAAAAAAT
Found at i:21726393 original size:19 final size:20
Alignment explanation
Indices: 21726359--21726403 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
21726349 AGATTTATTT
21726359 AACTTAAAATAAAATACAAA
1 AACTTAAAATAAAATACAAA
* *
21726379 AACTTAATA-AAAATATAAA
1 AACTTAAAATAAAATACAAA
*
21726398 GACTTA
1 AACTTA
21726404 TTTAATTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 14 0.64
20 8 0.36
ACGTcount: A:0.64, C:0.09, G:0.02, T:0.24
Consensus pattern (20 bp):
AACTTAAAATAAAATACAAA
Found at i:21741109 original size:2 final size:2
Alignment explanation
Indices: 21741102--21741127 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
21741092 GTACACATAC
21741102 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
21741128 TCTTTTAACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:21743840 original size:256 final size:252
Alignment explanation
Indices: 21743192--21743924 Score: 735
Period size: 253 Copynumber: 2.9 Consensus size: 252
21743182 TATGGTGTTG
* * * *
21743192 ACATGGGGGTAGAAATGACACTTGTATTATTACGTTTAATCAAGTTTTTATATTTTTATTTTTAG
1 ACATGAGGATAGAAATGATACTTATATTATTACGTTTAATCAAGTTTTTATATTTTTATTTTTA-
* * * * * *
21743257 AT-AAATAGGTCTTTATAATTAATAGTTAATTGACTATTGTTAACAAAAATGACACTTATATTTA
65 ATCAAATAAGTCTTTATAATTAATAATTGATTAACTGTTATTAACAAAAATGACACTTATATTTA
** * * * * **
21743321 TAACACATGGTGTTGATGTGGAGGTAGAAATG-CCATGTGATATGTCATCATCTATTATAACATG
130 T-ACACATGGTGTTGACATGG-GGTAAAAATGTCCA--TGACATGTCATCATTTATCACGACATG
* * * *
21743385 TCACT-TCAATGTTATGTAATATAAAATAACAAATGATATTTTTTTTATACCACATGATATTA
191 TCA-TATCAATATCATGTAGTATAAAATAACAAATGATATTTTTTTAATACCACATGATATTA
* * * *
21743447 ACATGAGGGTA-ATAAT-AT--TTTTATTATTACGTTCAATCAAGCCTTTTATATTTTTATTTTT
1 ACATGAGGATAGA-AATGATACTTATATTATTACGTTTAATCAAG-TTTTTATATTTTTATTTTT
* * ** * * * * *
21743508 AATCAAATAAATTTTTATAATTAGCAATTGGTTAATTGTCATTAACCAAAATGACACTTATATGT
64 AATCAAATAAGTCTTTATAATTAATAATTGATTAACTGTTATTAACAAAAATGACACTTATATTT
*
21743573 ATACCACATGGTGTTGACATAAGGGTAAAAATGTCGCATGACATGTCATCATTTATCACGACATG
129 ATA-CACATGGTGTTGACAT-GGGGTAAAAATGTC-CATGACATGTCATCATTTATCACGACATG
* * * * * * * *
21743638 TCATATCAGTACCATATAGTATAAAATGATAAATGATATTTTTTTAATATCACATGGTATTG
191 TCATATCAATATCATGTAGTATAAAATAACAAATGATATTTTTTTAATACCACATGATATTA
*** * *
21743700 GTGTGAGGATAGAAATGATACATATATTATTACATTTAATCAAGTTTTTTATATTTTTATTTTTA
1 ACATGAGGATAGAAATGATACTTATATTATTACGTTTAATCAAG-TTTTTATATTTTTATTTTTA
* ** * *
21743765 ATCACATAAGTCTTTATAATTAATAATTGATTAACTGTTATTAATTAAAATGATATTTATATTTA
65 ATCAAATAAGTCTTTATAATTAATAATTGATTAACTGTTATTAACAAAAATGACACTTATATTTA
* * * *
21743830 TACTACATGGT-ATGAACATGGGGTAAAAATGTCACATGACATGTTATTATTTATCACGATATGT
130 TAC-ACATGGTGTTG-ACATGGGGTAAAAATGTC-CATGACATGTCATCATTTATCACGACATGT
* *
21743894 TACATCAATATCATGTAGTATAAAATAACAA
192 CATATCAATATCATGTAGTATAAAATAACAA
21743925 GTAATGTTTA
Statistics
Matches: 387, Mismatches: 77, Indels: 28
0.79 0.16 0.06
Matches are distributed among these distances:
252 25 0.06
253 170 0.44
254 7 0.02
255 82 0.21
256 103 0.27
ACGTcount: A:0.37, C:0.10, G:0.13, T:0.40
Consensus pattern (252 bp):
ACATGAGGATAGAAATGATACTTATATTATTACGTTTAATCAAGTTTTTATATTTTTATTTTTAA
TCAAATAAGTCTTTATAATTAATAATTGATTAACTGTTATTAACAAAAATGACACTTATATTTAT
ACACATGGTGTTGACATGGGGTAAAAATGTCCATGACATGTCATCATTTATCACGACATGTCATA
TCAATATCATGTAGTATAAAATAACAAATGATATTTTTTTAATACCACATGATATTA
Found at i:21744699 original size:2 final size:2
Alignment explanation
Indices: 21744653--21744680 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
21744643 CTTTGCATAG
21744653 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
21744681 GTAAATTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:21750672 original size:23 final size:23
Alignment explanation
Indices: 21750642--21750687 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
21750632 TAGAATAACA
*
21750642 ATTCCTAATTCTATTAGGATAAG
1 ATTCCTAATTATATTAGGATAAG
*
21750665 ATTCCTAATTATATTAGTATAAG
1 ATTCCTAATTATATTAGGATAAG
21750688 GTTATTGTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.37, C:0.11, G:0.11, T:0.41
Consensus pattern (23 bp):
ATTCCTAATTATATTAGGATAAG
Found at i:21764241 original size:16 final size:16
Alignment explanation
Indices: 21764217--21764247 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
21764207 GTATTCATTC
21764217 TCTTAACATCTATTAT
1 TCTTAACATCTATTAT
*
21764233 TCTTGACATCTATTA
1 TCTTAACATCTATTA
21764248 GGAAAGTCAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.19, G:0.03, T:0.48
Consensus pattern (16 bp):
TCTTAACATCTATTAT
Found at i:21773315 original size:2 final size:2
Alignment explanation
Indices: 21773308--21773349 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
21773298 GAAAGAAATA
21773308 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
21773350 TTATGTGAAG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:21791540 original size:52 final size:54
Alignment explanation
Indices: 21791460--21791563 Score: 158
Period size: 52 Copynumber: 2.0 Consensus size: 54
21791450 CTACTTCTAC
*
21791460 ATTTTCTTTACCTTATATATTACAAAAGCAATTGTGCATGAGATCCATCTCCTT
1 ATTTTCTTTACCTTATATATTACAAAAGCAATTGTACATGAGATCCATCTCCTT
* * *
21791514 ATTTT-TTT-CCTTTTATATTACAAAAGCACTTTTACATGAGATCCATCTCC
1 ATTTTCTTTACCTTATATATTACAAAAGCAATTGTACATGAGATCCATCTCC
21791564 AATTACAGTC
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
52 38 0.83
53 3 0.07
54 5 0.11
ACGTcount: A:0.29, C:0.21, G:0.08, T:0.42
Consensus pattern (54 bp):
ATTTTCTTTACCTTATATATTACAAAAGCAATTGTACATGAGATCCATCTCCTT
Done.