Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21614486
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 1093914 characters in sequence are not A, C, G, or T
File 16 of 54
Found at i:7196752 original size:204 final size:204
Alignment explanation
Indices: 7196391--7196778 Score: 586
Period size: 204 Copynumber: 1.9 Consensus size: 204
7196381 CACACACACG
* *
7196391 TAAAGTCATTTACATCTATATTCAAAATCCTTTTTACATAACCCATGCCTCGACATGTTGATTTC
1 TAAAGTCATTTACATCTATATTCAAAATCCTTTTTACATAACCCATACCTCGACATGTTAATTTC
7196456 CGCACTACTTGTGCTCTAGAATAAATAACAGTACTTTCGAATACTTTACATCAATAAATACAAAA
66 CGCACTACTTGTGCTCTAGAATAAATAACAGTACTTTCGAATACTTTACATCAATAAATACAAAA
* * *
7196521 CAGCCACAGATTGGCTGATACAGTGGGCCTTGACCCAACATAACTGGCTACGAATACACACACAC
131 CAGCCACAAATTGGCTGACACAGTGGGCCTTGACCCAACATAACTGACTACGAATACACACACAC
7196586 ATATTCACA
196 ATATTCACA
*
7196595 TAAAGTCGTTTACATCTATATTCAAAATCCTTTTTACATAACCCATACCT-GAACATGTTAATTT
1 TAAAGTCATTTACATCTATATTCAAAATCCTTTTTACATAACCCATACCTCG-ACATGTTAATTT
*
7196659 TCGCACTACTTGTGCTCTAGAATAAATAACAGTACTTTC-AAGTACTTTACAT-AAGTAAATACA
65 CCGCACTACTTGTGCTCTAGAATAAATAACAGTACTTTCGAA-TACTTTACATCAA-TAAATACA
* ** * * * *
7196722 CAGGAGCCATAAATTGGCT-ACCATAGTGGGCCTTGACCTAACTTAACTGACTACGAA
128 AAACAGCCACAAATTGGCTGA-CACAGTGGGCCTTGACCCAACATAACTGACTACGAA
7196779 CAACCATACA
Statistics
Matches: 166, Mismatches: 14, Indels: 8
0.88 0.07 0.04
Matches are distributed among these distances:
203 6 0.04
204 160 0.96
ACGTcount: A:0.35, C:0.23, G:0.12, T:0.30
Consensus pattern (204 bp):
TAAAGTCATTTACATCTATATTCAAAATCCTTTTTACATAACCCATACCTCGACATGTTAATTTC
CGCACTACTTGTGCTCTAGAATAAATAACAGTACTTTCGAATACTTTACATCAATAAATACAAAA
CAGCCACAAATTGGCTGACACAGTGGGCCTTGACCCAACATAACTGACTACGAATACACACACAC
ATATTCACA
Found at i:7200593 original size:3 final size:3
Alignment explanation
Indices: 7200585--7200618 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
7200575 AAGTATTCCT
*
7200585 TTA TTA TTA TTA TTA TTA TTG TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
7200619 ATTTTGATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:7201356 original size:20 final size:19
Alignment explanation
Indices: 7201333--7201375 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
7201323 ATTTTAAATT
* *
7201333 TAAATTATAATAAAATAAAA
1 TAAAATATAAAAAAAT-AAA
7201353 TAAAATATAAAAAAATAAA
1 TAAAATATAAAAAAATAAA
7201372 TAAA
1 TAAA
7201376 GAAAAATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 7 0.33
20 14 0.67
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (19 bp):
TAAAATATAAAAAAATAAA
Found at i:7201359 original size:15 final size:14
Alignment explanation
Indices: 7201341--7201395 Score: 67
Period size: 14 Copynumber: 3.8 Consensus size: 14
7201331 TTTAAATTAT
7201341 AATAAAATAAAATAA
1 AATAAAA-AAAATAA
7201356 AATATAAAAAAAT-A
1 AATA-AAAAAAATAA
*
7201370 AATAAAGAAAAATAT
1 AATAAA-AAAAATAA
7201385 AATAAAAAAAA
1 AATAAAAAAAA
7201396 AGAGGTATGG
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
13 2 0.06
14 16 0.44
15 15 0.42
16 3 0.08
ACGTcount: A:0.80, C:0.00, G:0.02, T:0.18
Consensus pattern (14 bp):
AATAAAAAAAATAA
Found at i:7201381 original size:24 final size:25
Alignment explanation
Indices: 7201345--7201392 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 25
7201335 AATTATAATA
7201345 AAATAAAATAAAATATAA-AAAAAT
1 AAATAAAATAAAATATAATAAAAAT
7201369 AAATAAAGA-AAAATATAATAAAAA
1 AAATAAA-ATAAAATATAATAAAAA
7201393 AAAAGAGGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 16 0.73
25 6 0.27
ACGTcount: A:0.79, C:0.00, G:0.02, T:0.19
Consensus pattern (25 bp):
AAATAAAATAAAATATAATAAAAAT
Found at i:7201396 original size:15 final size:15
Alignment explanation
Indices: 7201338--7201396 Score: 75
Period size: 15 Copynumber: 4.0 Consensus size: 15
7201328 AAATTTAAAT
*
7201338 TATAATAAAATAAAA
1 TATAATAAAAAAAAA
* *
7201353 TAAAATATAAAAAAA
1 TATAATAAAAAAAAA
*
7201368 TA-AATAAAGAAAAA
1 TATAATAAAAAAAAA
7201382 TATAATAAAAAAAAA
1 TATAATAAAAAAAAA
7201397 GAGGTATGGC
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
14 12 0.32
15 25 0.68
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (15 bp):
TATAATAAAAAAAAA
Found at i:7202726 original size:9 final size:8
Alignment explanation
Indices: 7202708--7202763 Score: 51
Period size: 8 Copynumber: 6.8 Consensus size: 8
7202698 ATATGGATCT
7202708 AAATAAAA
1 AAATAAAA
7202716 AAATGAAAA
1 AAAT-AAAA
7202725 AAA-AACAA
1 AAATAA-AA
7202733 AAATAATAA
1 AAATAA-AA
* *
7202742 TAATAATA
1 AAATAAAA
*
7202750 AAATAAAT
1 AAATAAAA
7202758 AAATAA
1 AAATAA
7202764 TTCATGAAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
7 2 0.05
8 21 0.54
9 16 0.41
ACGTcount: A:0.79, C:0.02, G:0.02, T:0.18
Consensus pattern (8 bp):
AAATAAAA
Found at i:7215001 original size:13 final size:13
Alignment explanation
Indices: 7214969--7214993 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7214959 AAGATTAAAA
7214969 AATATAAAATAAT
1 AATATAAAATAAT
7214982 AATATAAAATAA
1 AATATAAAATAA
7214994 ATAAATAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (13 bp):
AATATAAAATAAT
Found at i:7217675 original size:12 final size:13
Alignment explanation
Indices: 7217655--7217691 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
7217645 GTAAGTTTTT
7217655 TTTTATAATTTTAA
1 TTTT-TAATTTTAA
7217669 -TTTTAATTTTAA
1 TTTTTAATTTTAA
7217681 TTTTTAATTTT
1 TTTTTAATTTT
7217692 TTGAGACATT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 9 0.41
13 13 0.59
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (13 bp):
TTTTTAATTTTAA
Found at i:7217692 original size:7 final size:6
Alignment explanation
Indices: 7217660--7217691 Score: 55
Period size: 6 Copynumber: 5.2 Consensus size: 6
7217650 TTTTTTTTTA
7217660 TAATTT TAATTT TAATTT TAATTTT TAATTT T
1 TAATTT TAATTT TAATTT TAA-TTT TAATTT T
7217692 TTGAGACATT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 19 0.76
7 6 0.24
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (6 bp):
TAATTT
Found at i:7217908 original size:40 final size:39
Alignment explanation
Indices: 7217864--7217950 Score: 111
Period size: 40 Copynumber: 2.2 Consensus size: 39
7217854 AGGATTTACA
* *
7217864 TAAATATTTAAATAAAATAGAAAGGATAAAATTATAGAAT
1 TAAATAATT-AATAAAATAAAAAGGATAAAATTATAGAAT
* *
7217904 TAAATAAATTAATTAATTAAAAAGGATAAAATTATAGAAT
1 TAAAT-AATTAATAAAATAAAAAGGATAAAATTATAGAAT
*
7217944 CAAATAA
1 TAAATAA
7217951 ATAAGTTCTC
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
39 2 0.05
40 36 0.88
41 3 0.07
ACGTcount: A:0.61, C:0.01, G:0.08, T:0.30
Consensus pattern (39 bp):
TAAATAATTAATAAAATAAAAAGGATAAAATTATAGAAT
Found at i:7221145 original size:2 final size:2
Alignment explanation
Indices: 7221138--7221190 Score: 106
Period size: 2 Copynumber: 26.5 Consensus size: 2
7221128 TCAATCTATG
7221138 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7221180 AT AT AT AT AT A
1 AT AT AT AT AT A
7221191 GGAGTATATG
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7222373 original size:57 final size:59
Alignment explanation
Indices: 7222262--7222404 Score: 227
Period size: 58 Copynumber: 2.4 Consensus size: 59
7222252 AAAATTTAAT
* *
7222262 TTAATTTAAAATTAATATAAACGAATGCCAAGAGTCCTACTTAAACTAATGTAATAAAG
1 TTAATTTAAAATTAATATAAACGAATGCCAAGAATCCTACTTAAACTAATGTAATAAAA
* *
7222321 TTAA-TTAAAATTAGTATAAACGAATGTC-AGAATCCTACTTAAACTAATGTAATAAAA
1 TTAATTTAAAATTAATATAAACGAATGCCAAGAATCCTACTTAAACTAATGTAATAAAA
7222378 TTAATTTAAAATTAATATAAACTGAAT
1 TTAATTTAAAATTAATATAAAC-GAAT
7222405 TAAAGTTAAC
Statistics
Matches: 77, Mismatches: 5, Indels: 4
0.90 0.06 0.05
Matches are distributed among these distances:
57 31 0.40
58 38 0.49
59 8 0.10
ACGTcount: A:0.49, C:0.10, G:0.08, T:0.33
Consensus pattern (59 bp):
TTAATTTAAAATTAATATAAACGAATGCCAAGAATCCTACTTAAACTAATGTAATAAAA
Found at i:7224565 original size:3 final size:3
Alignment explanation
Indices: 7224557--7224582 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
7224547 TCTCTGGTGC
7224557 ATG ATG ATG ATG ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG AT
7224583 ATTCACGAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.31, T:0.35
Consensus pattern (3 bp):
ATG
Found at i:7227451 original size:26 final size:26
Alignment explanation
Indices: 7227387--7227451 Score: 62
Period size: 26 Copynumber: 2.5 Consensus size: 26
7227377 CTAGATCACA
* *
7227387 CTCCCC-AGGGGAACACCTATATCGCG
1 CTCCCCTA-GGGAGCACCGATATCGCG
* *
7227413 CT-CCCTAAAGGAGCACCGATATCGTG
1 CTCCCCT-AGGGAGCACCGATATCGCG
7227439 CTCCCCTAGGGAG
1 CTCCCCTAGGGAG
7227452 ATCTGGCCAA
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
25 3 0.10
26 23 0.74
27 5 0.16
ACGTcount: A:0.23, C:0.35, G:0.25, T:0.17
Consensus pattern (26 bp):
CTCCCCTAGGGAGCACCGATATCGCG
Found at i:7227767 original size:333 final size:333
Alignment explanation
Indices: 7227161--7227819 Score: 969
Period size: 333 Copynumber: 2.0 Consensus size: 333
7227151 AAGTCCAATG
* ** *
7227161 GTTAATTAACTATTAATATTTCCGTTAGTTTGATAATGTGGAAATATTTTTCAAACAATTGTACC
1 GTTAATTAACTATTAATATTTCCATTAGTTTGATAATGTAAAAATATTTTTCAAACAATCGTACC
*
7227226 CTTCATTAATTTTAAAAATTATCACACTTTTAAACTATGATTTTTCATTTTTAAAATTTTTTCTC
66 CTTCATTAATTTTAAAAATTATCACACTTTTAAACTATAATTTTTCATTTTTAAAATTTTTTCTC
** *
7227291 TCTCATTCAAAAAAAAAATTCTCTACCCTACCTCTTGCCGACCGACCACCCCATGGCTGAATTTG
131 TCTCATTCAAAAAAAAAAAACTCTACCCTACCTCTTGCCGACCGACCACCCCATGGCTGAAATTG
* * * *
7227356 ACCTTAGAGCACCAAATTCGGCTAGATCACACTCCCCAGGGGAACACCTATATCGCGCTCCCTAA
196 ACCTGAGAGCACCAAATTCAGCCAGATCACACTCCCCAGGGGAACACCTATATCACGCTCCCTAA
** *
7227421 AGGAGCACCGATATCGTGCTCCCCTAGGGAGATCTGGCCAAATATGGTATTCCACGATCAGATTT
261 AGGAGCACCGATATCACGCTCCCCTAGGGAGATATGGCCAAATATGGTATTCCACGATCAGATTT
7227486 GTCCAACC
326 GTCCAACC
* ** * ** *
7227494 GTTAATTAACTGTTAATATTTTTATTAGTTTGATGATGTAAAAATATTTTTTGAACAATCGTACT
1 GTTAATTAACTATTAATATTTCCATTAGTTTGATAATGTAAAAATATTTTTCAAACAATCGTACC
*
7227559 CTTCATTAATTTTAAAAATTATCACACTTTTAAATTATAATTTTTCATTTTTAAAATTTTTTCTC
66 CTTCATTAATTTTAAAAATTATCACACTTTTAAACTATAATTTTTCATTTTTAAAATTTTTTCTC
* * *
7227624 TCTCATTTAAAAAAAAAAAACTCTACCCTACCTCTTGCCGACCTATCACCCCATGGCTGAAATTG
131 TCTCATTCAAAAAAAAAAAACTCTACCCTACCTCTTGCCGACCGACCACCCCATGGCTGAAATTG
* * * **
7227689 GCCTGAGAGCACTAAATTCAGCCAGATCACA-TCCCCCAGGGGAACACCTATATCATGCTCTTTA
196 ACCTGAGAGCACCAAATTCAGCCAGATCACACT-CCCCAGGGGAACACCTATATCACGCTCCCTA
* * * * * *
7227753 AGGGAGCACCGATATCACGCTTCCTTAGGGAGATATGGCCAGATCTGTTATTCCACGATCAGATT
260 AAGGAGCACCGATATCACGCTCCCCTAGGGAGATATGGCCAAATATGGTATTCCACGATCAGATT
7227818 TG
325 TG
7227820 ACTACAGGTT
Statistics
Matches: 288, Mismatches: 37, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
332 1 0.00
333 287 1.00
ACGTcount: A:0.31, C:0.22, G:0.13, T:0.34
Consensus pattern (333 bp):
GTTAATTAACTATTAATATTTCCATTAGTTTGATAATGTAAAAATATTTTTCAAACAATCGTACC
CTTCATTAATTTTAAAAATTATCACACTTTTAAACTATAATTTTTCATTTTTAAAATTTTTTCTC
TCTCATTCAAAAAAAAAAAACTCTACCCTACCTCTTGCCGACCGACCACCCCATGGCTGAAATTG
ACCTGAGAGCACCAAATTCAGCCAGATCACACTCCCCAGGGGAACACCTATATCACGCTCCCTAA
AGGAGCACCGATATCACGCTCCCCTAGGGAGATATGGCCAAATATGGTATTCCACGATCAGATTT
GTCCAACC
Found at i:7229937 original size:2 final size:2
Alignment explanation
Indices: 7229930--7229964 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
7229920 GCACGCATGA
7229930 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7229965 NNNNNNNNNN
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7231212 original size:2 final size:2
Alignment explanation
Indices: 7231205--7231245 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
7231195 TAGAATAATA
7231205 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7231246 ATCTGCATTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7245621 original size:16 final size:16
Alignment explanation
Indices: 7245600--7245633 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
7245590 TACATCAGTC
7245600 CCACATCAAAATAGAG
1 CCACATCAAAATAGAG
7245616 CCACATCAAAATAGAG
1 CCACATCAAAATAGAG
7245632 CC
1 CC
7245634 CACAATTCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.47, C:0.29, G:0.12, T:0.12
Consensus pattern (16 bp):
CCACATCAAAATAGAG
Found at i:7248888 original size:21 final size:22
Alignment explanation
Indices: 7248835--7248888 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
7248825 AAACGTATCA
7248835 GATACGATTAAATATGAAATAC
1 GATACGATTAAATATGAAATAC
* *
7248857 GTTAAGATTAAATATG-AATAC
1 GATACGATTAAATATGAAATAC
*
7248878 GATACGTTTAA
1 GATACGATTAA
7248889 TAATCATATT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
21 13 0.48
22 14 0.52
ACGTcount: A:0.46, C:0.07, G:0.15, T:0.31
Consensus pattern (22 bp):
GATACGATTAAATATGAAATAC
Found at i:7249062 original size:13 final size:14
Alignment explanation
Indices: 7249041--7249080 Score: 55
Period size: 13 Copynumber: 2.9 Consensus size: 14
7249031 TATAATTAAA
*
7249041 TATAATTTAAAATT
1 TATAATTTAAAATC
7249055 TA-AATTTAAAATC
1 TATAATTTAAAATC
7249068 TATAATTATAAAA
1 TATAATT-TAAAA
7249081 ATAATTATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
13 12 0.52
14 6 0.26
15 5 0.22
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (14 bp):
TATAATTTAAAATC
Found at i:7249446 original size:31 final size:32
Alignment explanation
Indices: 7249406--7249466 Score: 81
Period size: 31 Copynumber: 1.9 Consensus size: 32
7249396 AAGTAAACAT
7249406 ATTTATCGTGTCTGACACGT-TAAGACACTAAA
1 ATTTATCGTGTCTGA-ACGTGTAAGACACTAAA
* *
7249438 ATTT-TCGTGTCTTAACGTGTCAGACACTA
1 ATTTATCGTGTCTGAACGTGTAAGACACTA
7249467 TTATACACCA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 4 0.15
31 18 0.69
32 4 0.15
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34
Consensus pattern (32 bp):
ATTTATCGTGTCTGAACGTGTAAGACACTAAA
Found at i:7267241 original size:2 final size:2
Alignment explanation
Indices: 7267234--7267269 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
7267224 ATCATATTAC
7267234 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7267270 TTACATACTC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7267793 original size:2 final size:2
Alignment explanation
Indices: 7267786--7267830 Score: 81
Period size: 2 Copynumber: 22.5 Consensus size: 2
7267776 TATAAAATAC
*
7267786 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7267828 AT A
1 AT A
7267831 CCTTTTGATC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7268710 original size:51 final size:50
Alignment explanation
Indices: 7268655--7268793 Score: 179
Period size: 51 Copynumber: 2.7 Consensus size: 50
7268645 TTTCTTTGTC
* *
7268655 TTTTTTTAAACTTCATGGTATAAAACTGACATTAACTTCTTCTGATTGATT
1 TTTTTTTAAACTTCATGATATAAAACTGAC-TTAACTTCTTCTAATTGATT
* * * *
7268706 TTTTTTTTAACTTGATGATATAAAATTGACTTGAACTTCTTCTAATTGCTT
1 TTTTTTTAAACTTCATGATATAAAACTGACTT-AACTTCTTCTAATTGATT
* *
7268757 TTCTTTTAAACTTCATAATATAAAACTGACGTTAACT
1 TTTTTTTAAACTTCATGATATAAAACTGAC-TTAACT
7268794 AAAATAACAC
Statistics
Matches: 75, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
50 2 0.03
51 71 0.95
52 2 0.03
ACGTcount: A:0.31, C:0.14, G:0.09, T:0.47
Consensus pattern (50 bp):
TTTTTTTAAACTTCATGATATAAAACTGACTTAACTTCTTCTAATTGATT
Found at i:7269444 original size:19 final size:20
Alignment explanation
Indices: 7269422--7269467 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
7269412 AATTATATTG
*
7269422 TTTATTCGTTATT-AAAAAT
1 TTTATTAGTTATTAAAAAAT
* *
7269441 TTTATTATTTTTTAAAAAAT
1 TTTATTAGTTATTAAAAAAT
7269461 TTTATTA
1 TTTATTA
7269468 ATTGATCTCA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 10 0.43
20 13 0.57
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59
Consensus pattern (20 bp):
TTTATTAGTTATTAAAAAAT
Found at i:7277025 original size:25 final size:25
Alignment explanation
Indices: 7276991--7277045 Score: 83
Period size: 25 Copynumber: 2.2 Consensus size: 25
7276981 TGCCATGCAT
* *
7276991 GCATGTAACAACTCTAATGAACTTG
1 GCATGTAACAAATCTAATGAACGTG
*
7277016 GCATGTAACAAATCTATTGAACGTG
1 GCATGTAACAAATCTAATGAACGTG
7277041 GCATG
1 GCATG
7277046 ACATATAACA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (25 bp):
GCATGTAACAAATCTAATGAACGTG
Found at i:7277351 original size:26 final size:24
Alignment explanation
Indices: 7277321--7277389 Score: 68
Period size: 24 Copynumber: 2.8 Consensus size: 24
7277311 ATGTAGTAAA
* *
7277321 ATTTTTTTGAACATGACGTGCAAC
1 ATTTTTTTTAACATGACGTGAAAC
* *
7277345 ATTTTTTCT-ACATGACGTTAAAC
1 ATTTTTTTTAACATGACGTGAAAC
*
7277368 AATTTTTTTTCAACATGGCGTG
1 -ATTTTTTTT-AACATGACGTG
7277390 TGACGACATT
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
23 12 0.34
24 15 0.43
26 8 0.23
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.42
Consensus pattern (24 bp):
ATTTTTTTTAACATGACGTGAAAC
Found at i:7277368 original size:23 final size:24
Alignment explanation
Indices: 7277331--7277375 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
7277321 ATTTTTTTGA
*
7277331 ACATGACGTGCAAC-ATTTTTTCT
1 ACATGACGTGAAACAATTTTTTCT
*
7277354 ACATGACGTTAAACAATTTTTT
1 ACATGACGTGAAACAATTTTTT
7277376 TTCAACATGG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 12 0.63
24 7 0.37
ACGTcount: A:0.31, C:0.18, G:0.11, T:0.40
Consensus pattern (24 bp):
ACATGACGTGAAACAATTTTTTCT
Found at i:7277815 original size:15 final size:15
Alignment explanation
Indices: 7277781--7277809 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
7277771 TATCTCAAAC
7277781 ATAATTAATAATTTT
1 ATAATTAATAATTTT
7277796 ATAATT-ATAATTTT
1 ATAATTAATAATTTT
7277810 TGTAATGTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
ATAATTAATAATTTT
Found at i:7278333 original size:336 final size:342
Alignment explanation
Indices: 7277955--7278577 Score: 895
Period size: 336 Copynumber: 1.8 Consensus size: 342
7277945 ATATATATAT
* * * *
7277955 ATATATAAAGTATATATATTGAAAGACATTATAAGTTAATTAATAATTATAGTTTCATGAATTAA
1 ATATATAAACTATATATATTAAAAGACATTACAAGTTAATTAATAATAATAGTTTCATGAATTAA
** * **
7278020 TTTAATTAATTATACGGGTTTGTCCTTAATTACATAAAATTAAAAAAAAAGA-AC-TAGGTTTTA
66 TTTAATTAATTATA-GGAATTGTCCTTAATTACATAAAATTAAAAAAAAAAACACTTAGGTTCCA
* * * * *
7278083 GAACTATTATAATCTCACAA-CTTCTCTTT-AG-GT-T-TA-CATAAGTTTATATAAACAAAGTT
130 AAACTATTATAATCTCAAAAGCTT-TCTTTAAGTATATATATCATAAGATTATATAAACAAAGGT
* * * *
7278142 ATGTATATTATAATTAATAATTTTATAAGTTATAA-TTTTGTAATGTTAATACAAAATAGAAAGT
194 ATATATATTATAATTAATAATTTTATAAGTCATAATTTTTATAATGTTAACACAAAATAGAAAGT
* *
7278206 AAATATGTTTATATTTTAAAGTATATATATTAAAAATATTTTAGTATATATATAATAGTAATTAT
259 AAATATATTTATA-TTAAAAGTATATATATTAAAAATATTTTAGTATATATATAATAGTAATTAT
7278271 ATTTCTTATAAATTAACACA
323 ATTTCTTATAAATTAACACA
7278291 ATATATAAACTATATATATTAAAAGACATTACAAGTTAATTAATAATAATAGTTTCATGAATTAA
1 ATATATAAACTATATATATTAAAAGACATTACAAGTTAATTAATAATAATAGTTTCATGAATTAA
* * * *
7278356 TTTAATTAATTATATGAATTGTTCTTAATTTCATGAAATTAAAAAAAAAAACACTTAGGTTCCAA
66 TTTAATTAATTATAGGAATTGTCCTTAATTACATAAAATTAAAAAAAAAAACACTTAGGTTCCAA
* * * *
7278421 AACTATTCTAATCTCAAAAGCTTTTTTTAAGTATATATATTATAAGATTATATAAACAATGGTAT
131 AACTATTATAATCTCAAAAGCTTTCTTTAAGTATATATATCATAAGATTATATAAACAAAGGTAT
*
7278486 ATATATTATAATTAATAATTTTATAAGTCATAATTTTTATAATGTTAACATAAAATAGAAAGTAA
196 ATATATTATAATTAATAATTTTATAAGTCATAATTTTTATAATGTTAACACAAAATAGAAAGTAA
7278551 ATATATTTATATTAAAAGTATATATAT
261 ATATATTTATATTAAAAGTATATATAT
7278578 AATAGTAATT
Statistics
Matches: 249, Mismatches: 29, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
335 30 0.12
336 77 0.31
337 28 0.11
338 5 0.02
339 1 0.00
340 1 0.00
341 2 0.01
342 67 0.27
343 38 0.15
ACGTcount: A:0.45, C:0.06, G:0.08, T:0.41
Consensus pattern (342 bp):
ATATATAAACTATATATATTAAAAGACATTACAAGTTAATTAATAATAATAGTTTCATGAATTAA
TTTAATTAATTATAGGAATTGTCCTTAATTACATAAAATTAAAAAAAAAAACACTTAGGTTCCAA
AACTATTATAATCTCAAAAGCTTTCTTTAAGTATATATATCATAAGATTATATAAACAAAGGTAT
ATATATTATAATTAATAATTTTATAAGTCATAATTTTTATAATGTTAACACAAAATAGAAAGTAA
ATATATTTATATTAAAAGTATATATATTAAAAATATTTTAGTATATATATAATAGTAATTATATT
TCTTATAAATTAACACA
Found at i:7278511 original size:15 final size:16
Alignment explanation
Indices: 7278491--7278528 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
7278481 GGTATATATA
7278491 TTATAATTAATAA-TT
1 TTATAATTAATAATTT
* *
7278506 TTATAAGTCATAATTT
1 TTATAATTAATAATTT
7278522 TTATAAT
1 TTATAAT
7278529 GTTAACATAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
15 11 0.58
16 8 0.42
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.53
Consensus pattern (16 bp):
TTATAATTAATAATTT
Found at i:7282139 original size:20 final size:20
Alignment explanation
Indices: 7282116--7282161 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
7282106 CTTCTAAATC
*
7282116 TCAAATCATACTTCAATAAG
1 TCAAATCATACTCCAATAAG
*
7282136 TCAAATTATACTCCAATAAG
1 TCAAATCATACTCCAATAAG
7282156 TCAAAT
1 TCAAAT
7282162 GGGGCCAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.46, C:0.20, G:0.04, T:0.30
Consensus pattern (20 bp):
TCAAATCATACTCCAATAAG
Found at i:7285804 original size:95 final size:95
Alignment explanation
Indices: 7285598--7285818 Score: 295
Period size: 96 Copynumber: 2.3 Consensus size: 95
7285588 GTCCCATTTG
* * ** *
7285598 CCATCACTTTGAGAGACAAAAAGTATG-CCAATTTAATCAAATGGTTTGGGATGGATTTAAAGTA
1 CCATCACTTTGAGAGATAAAAAGTATGCCCAATTCAATCAAATGGTTTAAGAGGGATTTAAAGTA
7285662 GGGGCAATGAAAGCTATTATTAGACTTAAATA
66 GGGGCAATGAAAGC--TTATTAGACTTAAATA
*
7285694 CCATCACTTTGAGAGATAAAAAGTATGCCCAATTCAATCAAATGGGTTATAAGAGGGATTTAGAG
1 CCATCACTTTGAGAGATAAAAAGTATGCCCAATTCAATCAAAT-GGTT-TAAGAGGGATTTAAAG
* * *
7285759 TA-GGGCAATGGAAGC-TATTAGACTTTAGTA
64 TAGGGGCAATGAAAGCTTATTAGACTTAAATA
7285789 CCATCACTTTGAGAGATAAAAAAGTATGCC
1 CCATCACTTTGAGAGAT-AAAAAGTATGCC
7285819 TAGAGATGGA
Statistics
Matches: 112, Mismatches: 9, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
95 30 0.27
96 38 0.34
97 14 0.12
98 16 0.14
99 14 0.12
ACGTcount: A:0.38, C:0.13, G:0.21, T:0.28
Consensus pattern (95 bp):
CCATCACTTTGAGAGATAAAAAGTATGCCCAATTCAATCAAATGGTTTAAGAGGGATTTAAAGTA
GGGGCAATGAAAGCTTATTAGACTTAAATA
Found at i:7309615 original size:24 final size:24
Alignment explanation
Indices: 7309588--7309636 Score: 82
Period size: 24 Copynumber: 2.0 Consensus size: 24
7309578 TTCCTTCTCC
7309588 AAGTCTGCTT-TTTATTTTCTTAAG
1 AAGTCTG-TTGTTTATTTTCTTAAG
7309612 AAGTCTGTTGTTTATTTTCTTAAG
1 AAGTCTGTTGTTTATTTTCTTAAG
7309636 A
1 A
7309637 TGGCCTGTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 2 0.08
24 22 0.92
ACGTcount: A:0.22, C:0.10, G:0.14, T:0.53
Consensus pattern (24 bp):
AAGTCTGTTGTTTATTTTCTTAAG
Found at i:7312453 original size:27 final size:25
Alignment explanation
Indices: 7312418--7312467 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 25
7312408 AAATAGATAA
7312418 AAATAATCAATATTTAATTTAATAACC
1 AAATAATC-A-ATTTAATTTAATAACC
* *
7312445 AAATTATCAATTTACTTTAATAA
1 AAATAATCAATTTAATTTAATAA
7312468 GGATGTCAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 13 0.62
26 1 0.05
27 7 0.33
ACGTcount: A:0.50, C:0.10, G:0.00, T:0.40
Consensus pattern (25 bp):
AAATAATCAATTTAATTTAATAACC
Found at i:7320328 original size:24 final size:24
Alignment explanation
Indices: 7320301--7320347 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
7320291 TTCCTTCTCC
7320301 AAGTCAACTGTTTATTTTCTTAAG
1 AAGTCAACTGTTTATTTTCTTAAG
**
7320325 AAGTCTGCTGTTTATTTTCTTAA
1 AAGTCAACTGTTTATTTTCTTAA
7320348 AAAAAATCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.26, C:0.13, G:0.13, T:0.49
Consensus pattern (24 bp):
AAGTCAACTGTTTATTTTCTTAAG
Found at i:7321405 original size:19 final size:20
Alignment explanation
Indices: 7321373--7321410 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
7321363 CTACATTTCT
*
7321373 ATTATGATAGATTT-TTTAG
1 ATTATGATAAATTTATTTAG
*
7321392 ATTATTATAAATTTATTTA
1 ATTATGATAAATTTATTTA
7321411 TACATTTAGT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 12 0.75
20 4 0.25
ACGTcount: A:0.37, C:0.00, G:0.08, T:0.55
Consensus pattern (20 bp):
ATTATGATAAATTTATTTAG
Found at i:7347663 original size:144 final size:144
Alignment explanation
Indices: 7347403--7347698 Score: 468
Period size: 144 Copynumber: 2.1 Consensus size: 144
7347393 TCTATTGTTG
* *
7347403 GAAAGATCTAAATGCTGCAAACCTTCAGATCTACTTAAAAAGTGGGGAAATTCACTAATGTTGCA
1 GAAAGATCTAAATGCTGCAAAACTTCAAATCTACTTAAAAAGTGGGGAAATTCACTAATGTTGCA
* * *
7347468 AGAAGACAAACGCAAATATTGAAGATTAGGTAAGGCATAATCAAGATCAATATCAGAGTTCAGTG
66 AGAAGACAAACGCAAATACTGAAGATTAGGCAAGGCATAATCAACATCAATATCAGAGTTCAGTG
**
7347533 ATAGCTTGTTATAT
131 ATAGAGTGTTATAT
*
7347547 GAAAGATCTAAATGCTGCAAAACTTCAAATCTACTTAAGAAGTGGGGAAATTCACTAATGTTGCA
1 GAAAGATCTAAATGCTGCAAAACTTCAAATCTACTTAAAAAGTGGGGAAATTCACTAATGTTGCA
* * *
7347612 AGAAG-CCAGCTGCAAATACTGAAGATTAGGCAAGGTATAATCAACATCAATATCAGAGTTCAGT
66 AGAAGACAAAC-GCAAATACTGAAGATTAGGCAAGGCATAATCAACATCAATATCAGAGTTCAGT
*
7347676 GATAGAGTGTTGTAT
130 GATAGAGTGTTATAT
7347691 GAAAGATC
1 GAAAGATC
7347699 AAGACCTTCA
Statistics
Matches: 139, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
143 3 0.02
144 136 0.98
ACGTcount: A:0.40, C:0.14, G:0.20, T:0.26
Consensus pattern (144 bp):
GAAAGATCTAAATGCTGCAAAACTTCAAATCTACTTAAAAAGTGGGGAAATTCACTAATGTTGCA
AGAAGACAAACGCAAATACTGAAGATTAGGCAAGGCATAATCAACATCAATATCAGAGTTCAGTG
ATAGAGTGTTATAT
Found at i:7355402 original size:29 final size:28
Alignment explanation
Indices: 7355370--7355426 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
7355360 ATGGATAACC
*
7355370 ATTTTTCATAATATATTTTGCTTTCTTTT
1 ATTTTTCAGAA-ATATTTTGCTTTCTTTT
** *
7355399 ATTTTTGGGCAATATTTTGCTTTCTTTT
1 ATTTTTCAGAAATATTTTGCTTTCTTTT
7355427 TGACCTGTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 17 0.71
29 7 0.29
ACGTcount: A:0.18, C:0.11, G:0.09, T:0.63
Consensus pattern (28 bp):
ATTTTTCAGAAATATTTTGCTTTCTTTT
Found at i:7360535 original size:21 final size:21
Alignment explanation
Indices: 7360502--7360548 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 21
7360492 AAGTCCACAT
*
7360502 TAAAAAACGAAAATA-AATACA
1 TAAAAAACGAAAACATAATA-A
7360523 TAAAAAA-GTAAAACATAATAA
1 TAAAAAACG-AAAACATAATAA
7360544 TAAAA
1 TAAAA
7360549 TACAAAAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
20 1 0.04
21 18 0.78
22 4 0.17
ACGTcount: A:0.72, C:0.06, G:0.04, T:0.17
Consensus pattern (21 bp):
TAAAAAACGAAAACATAATAA
Found at i:7360555 original size:20 final size:20
Alignment explanation
Indices: 7360532--7360593 Score: 58
Period size: 20 Copynumber: 3.2 Consensus size: 20
7360522 ATAAAAAAGT
7360532 AAAACATAATAATAAAATAC
1 AAAACATAATAATAAAATAC
* * **
7360552 AAAAAATAAAAATGCTAATA-
1 AAAACATAATAAT-AAAATAC
7360572 AAAACATAATAA-AAAA-AC
1 AAAACATAATAATAAAATAC
7360590 AAAA
1 AAAA
7360594 AAGAGAGAAA
Statistics
Matches: 32, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
17 1 0.03
18 6 0.19
20 21 0.66
21 4 0.12
ACGTcount: A:0.74, C:0.08, G:0.02, T:0.16
Consensus pattern (20 bp):
AAAACATAATAATAAAATAC
Found at i:7369732 original size:15 final size:14
Alignment explanation
Indices: 7369714--7369789 Score: 53
Period size: 15 Copynumber: 5.1 Consensus size: 14
7369704 CATATCGATA
7369714 AAGATGAAGATGAAG
1 AAGATGAA-ATGAAG
*
7369729 AAGATGACATGGAAG
1 AAGATGAAAT-GAAG
* *
7369744 GAGAAGATAATGAAG
1 AAGATGA-AATGAAG
* * *
7369759 ATGATGATAAAGATG
1 AAGATGA-AATGAAG
7369774 AAGATGAAGATGAAG
1 AAGATGAA-ATGAAG
7369789 A
1 A
7369790 TCATGTGGAG
Statistics
Matches: 46, Mismatches: 12, Indels: 6
0.72 0.19 0.09
Matches are distributed among these distances:
14 3 0.07
15 41 0.89
16 2 0.04
ACGTcount: A:0.51, C:0.01, G:0.32, T:0.16
Consensus pattern (14 bp):
AAGATGAAATGAAG
Found at i:7369762 original size:6 final size:6
Alignment explanation
Indices: 7369753--7369790 Score: 58
Period size: 6 Copynumber: 6.3 Consensus size: 6
7369743 GGAGAAGATA
* *
7369753 ATGAAG ATGATG ATAAAG ATGAAG ATGAAG ATGAAG AT
1 ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG AT
7369791 CATGTGGAGC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.29, T:0.21
Consensus pattern (6 bp):
ATGAAG
Found at i:7372336 original size:46 final size:46
Alignment explanation
Indices: 7372268--7372390 Score: 122
Period size: 46 Copynumber: 2.7 Consensus size: 46
7372258 TCCAATTGAA
* *** *
7372268 TTTCCTTTGGAAATAATTTTTCCAACGGAAAAAATTTCGACTGATT
1 TTTCCGTTGGAAATAGGATTTCCAACGGAAAAAATTCCGACTGATT
* ** * *
7372314 TTTCCGTTGGAAATGGGATTTCCAACAGG-AATTATTCCTACTGTTT
1 TTTCCGTTGGAAATAGGATTTCCAAC-GGAAAAAATTCCGACTGATT
* *
7372360 TTTCCGTTGGAAATAGGCTTTCCAACAGAAA
1 TTTCCGTTGGAAATAGGATTTCCAACGGAAA
7372391 TTTCATTAGA
Statistics
Matches: 62, Mismatches: 13, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
45 1 0.02
46 59 0.95
47 2 0.03
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.37
Consensus pattern (46 bp):
TTTCCGTTGGAAATAGGATTTCCAACGGAAAAAATTCCGACTGATT
Found at i:7372422 original size:15 final size:16
Alignment explanation
Indices: 7372402--7372434 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
7372392 TTCATTAGAA
7372402 ATTTT-CAACGGAATT
1 ATTTTCCAACGGAATT
*
7372417 ATTTTCCAACGGATTT
1 ATTTTCCAACGGAATT
7372433 AT
1 AT
7372435 AAAAAAAAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.30, C:0.15, G:0.12, T:0.42
Consensus pattern (16 bp):
ATTTTCCAACGGAATT
Found at i:7378929 original size:26 final size:25
Alignment explanation
Indices: 7378889--7378939 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 25
7378879 TTTCCAACGG
7378889 ATTTCCAACAAAAATCCTGTTGGAAA
1 ATTTCCAACAAAAATCC-GTTGGAAA
* *
7378915 ATTTCTAACAGAAATCCGTTGGAAA
1 ATTTCCAACAAAAATCCGTTGGAAA
7378940 TCTGTTGGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.41, C:0.18, G:0.14, T:0.27
Consensus pattern (25 bp):
ATTTCCAACAAAAATCCGTTGGAAA
Found at i:7382776 original size:198 final size:195
Alignment explanation
Indices: 7382438--7382823 Score: 745
Period size: 198 Copynumber: 2.0 Consensus size: 195
7382428 TTATAACATT
7382438 AATGAATTTTGAACAATTAATTTATAATTTATGATTCAATAAAGTTTTTAAAATATATAAAAAAT
1 AATGAATTTTGAACAATTAATTTATAATTTATGATTCAATAAAGTTTTTAAAATATATAAAAAAT
7382503 AATAAGCAAAGAAAAACATATTTAAATTTTTAATATTATAAATCTCAGTATGTACATATTTAATA
66 AATAAGCAAAGAAAAACATATTTAAATTTTTAATATTATAAATCTCAGTATGTACATATTTAATA
7382568 TTATTAATATATTTCCTATAAAGGATTAATAAAATTTTAAATAAAAAAAGTTAAAAAAAAATCAG
131 TTATTAATATATTTCCTATAAAGGATTAATAAAATTTTAAAT-AAAAAA-TTAAAAAAAAATCAG
7382633 CC
194 CC
7382635 NAATGAATTTTGAACAATTAATTTATAATTTATGATTCAATAAAGTTTTTAAAATATATAAAAAA
1 -AATGAATTTTGAACAATTAATTTATAATTTATGATTCAATAAAGTTTTTAAAATATATAAAAAA
7382700 TAATAAGCAAAGAAAAACATATTTAAATTTTTAATATTATAAATCTCAGTATGTACATATTTAAT
65 TAATAAGCAAAGAAAAACATATTTAAATTTTTAATATTATAAATCTCAGTATGTACATATTTAAT
7382765 ATTATTAATATATTTCCTATAAAGGATTAATAAAATTTTAAATAAAAAATTAAAAAAAA
130 ATTATTAATATATTTCCTATAAAGGATTAATAAAATTTTAAATAAAAAATTAAAAAAAA
7382824 TAGTAATACC
Statistics
Matches: 188, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
196 10 0.05
197 6 0.03
198 172 0.91
ACGTcount: A:0.51, C:0.05, G:0.06, T:0.38
Consensus pattern (195 bp):
AATGAATTTTGAACAATTAATTTATAATTTATGATTCAATAAAGTTTTTAAAATATATAAAAAAT
AATAAGCAAAGAAAAACATATTTAAATTTTTAATATTATAAATCTCAGTATGTACATATTTAATA
TTATTAATATATTTCCTATAAAGGATTAATAAAATTTTAAATAAAAAATTAAAAAAAAATCAGCC
Found at i:7392296 original size:15 final size:15
Alignment explanation
Indices: 7392269--7392319 Score: 50
Period size: 16 Copynumber: 3.3 Consensus size: 15
7392259 TTAAAAAACG
7392269 AAAA-TAAATACATAA
1 AAAATTAAA-ACATAA
7392284 AAAATTAAAACATAA
1 AAAATTAAAACATAA
* *
7392299 TAAAATGCAAAAAATAA
1 -AAAAT-TAAAACATAA
7392316 AAAA
1 AAAA
7392320 CGCTAATAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
15 10 0.32
16 13 0.42
17 8 0.26
ACGTcount: A:0.75, C:0.06, G:0.02, T:0.18
Consensus pattern (15 bp):
AAAATTAAAACATAA
Found at i:7393219 original size:18 final size:18
Alignment explanation
Indices: 7393196--7393230 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
7393186 TTTCCATAAA
7393196 ATTTAAACTT-ATCACTCT
1 ATTTAAA-TTAATCACTCT
7393214 ATTTAAATTAATCACTC
1 ATTTAAATTAATCACTC
7393231 ATTGTTCAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 2 0.12
18 14 0.88
ACGTcount: A:0.37, C:0.20, G:0.00, T:0.43
Consensus pattern (18 bp):
ATTTAAATTAATCACTCT
Found at i:7401213 original size:34 final size:30
Alignment explanation
Indices: 7401170--7401231 Score: 88
Period size: 30 Copynumber: 1.9 Consensus size: 30
7401160 TTGCATACAG
7401170 ACCTCTTTTTATTTGTTTTTTTCTTTCTCTTTCT
1 ACCTC-TTTT-TTT-TTTTTTTC-TTCTCTTTCT
7401204 ACCTCTTTTTTTTTTTTTTCTTCTCTTT
1 ACCTCTTTTTTTTTTTTTTCTTCTCTTT
7401232 TTCCTATGCC
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
30 8 0.29
31 8 0.29
32 3 0.11
33 4 0.14
34 5 0.18
ACGTcount: A:0.05, C:0.21, G:0.02, T:0.73
Consensus pattern (30 bp):
ACCTCTTTTTTTTTTTTTTCTTCTCTTTCT
Found at i:7401849 original size:22 final size:20
Alignment explanation
Indices: 7401807--7401856 Score: 55
Period size: 22 Copynumber: 2.4 Consensus size: 20
7401797 TTTTATATTA
*
7401807 TATAAAATTTTTAATTTTTT
1 TATAAAATTTTTAATTCTTT
*
7401827 TATAAATTCTTTTAATATCTTT
1 TATAAAAT-TTTTAAT-TCTTT
*
7401849 TCTAAAAT
1 TATAAAAT
7401857 AACTTTTAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
20 7 0.29
21 7 0.29
22 10 0.42
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.58
Consensus pattern (20 bp):
TATAAAATTTTTAATTCTTT
Found at i:7402001 original size:35 final size:36
Alignment explanation
Indices: 7401935--7402006 Score: 92
Period size: 35 Copynumber: 2.0 Consensus size: 36
7401925 AAAGTTTTGT
* * *
7401935 TTTATTTTTTTTCAATTTATATTTTAATTATTTATA
1 TTTACTTTTTTTCAATTTATATTATAATTATTCATA
* *
7401971 TTTACTTTTTTTC-ATTTCTATTATATTTATTCATA
1 TTTACTTTTTTTCAATTTATATTATAATTATTCATA
7402006 T
1 T
7402007 GTTTTAAATC
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
35 19 0.61
36 12 0.39
ACGTcount: A:0.25, C:0.07, G:0.00, T:0.68
Consensus pattern (36 bp):
TTTACTTTTTTTCAATTTATATTATAATTATTCATA
Found at i:7402665 original size:41 final size:41
Alignment explanation
Indices: 7402587--7402670 Score: 116
Period size: 41 Copynumber: 2.0 Consensus size: 41
7402577 AATCTAAACA
*
7402587 TATCATAACATATTATATCTTAACAGTCCAACCCAATAGCT
1 TATCATAACATATTATATCTTAACAGTCCAACCCAATAACT
* * *
7402628 TATCATAACATATTATAT-TTCAATAGTTCAACTCAATAACT
1 TATCATAACATATTATATCTT-AACAGTCCAACCCAATAACT
7402669 TA
1 TA
7402671 GTATGTTAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
40 2 0.05
41 36 0.95
ACGTcount: A:0.40, C:0.20, G:0.04, T:0.36
Consensus pattern (41 bp):
TATCATAACATATTATATCTTAACAGTCCAACCCAATAACT
Found at i:7404887 original size:65 final size:65
Alignment explanation
Indices: 7404774--7404905 Score: 187
Period size: 65 Copynumber: 2.0 Consensus size: 65
7404764 AGACCAAGAC
* * *
7404774 CTTTGCCTACCACTTTTCCACCCCTGCGTGAAGGTGGGACTTAAACC-AAGGACTTACAACATGA
1 CTTTGCCTACCACTTTTCCACCCCTGCGTGAAGGTGGGACTCAAACCAAAGCACTAACAACATGA
* *
7404838 CTTTGGCCTGCCACTTTTCCACCCCTGCGTGACA-GTGGGACTCAAACCAAAGCACTAACAGCAT
1 CTTT-GCCTACCACTTTTCCACCCCTGCGTGA-AGGTGGGACTCAAACCAAAGCACTAACAACAT
7404902 GA
64 GA
7404904 CT
1 CT
7404906 CTGAAATGTT
Statistics
Matches: 60, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
64 4 0.07
65 39 0.65
66 17 0.28
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.23
Consensus pattern (65 bp):
CTTTGCCTACCACTTTTCCACCCCTGCGTGAAGGTGGGACTCAAACCAAAGCACTAACAACATGA
Found at i:7408090 original size:41 final size:41
Alignment explanation
Indices: 7408012--7408095 Score: 114
Period size: 41 Copynumber: 2.0 Consensus size: 41
7408002 AATCTAAACC
* * *
7408012 TATTATAACATATTATATTTTAACAGTCCAACCCAATAACT
1 TATTATAACATATTATATCTCAACAATCCAACCCAATAACT
* * *
7408053 TATTATAACATATTATATCTCAATAATTCAACTCAATAACT
1 TATTATAACATATTATATCTCAACAATCCAACCCAATAACT
7408094 TA
1 TA
7408096 ATATGTTAAT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.43, C:0.18, G:0.01, T:0.38
Consensus pattern (41 bp):
TATTATAACATATTATATCTCAACAATCCAACCCAATAACT
Found at i:7416443 original size:47 final size:47
Alignment explanation
Indices: 7416381--7416489 Score: 182
Period size: 47 Copynumber: 2.3 Consensus size: 47
7416371 TTATATTAAT
* * *
7416381 TTTAAATTAACTTTATTAGATCAGTTTAAATAGGACTGTGACACTCA
1 TTTATATTAATTTTATTAGATCAGTTTAAATAGGACTGTAACACTCA
*
7416428 TTTATATTAATTTTATTATATCAGTTTAAATAGGACTGTAACACTCA
1 TTTATATTAATTTTATTAGATCAGTTTAAATAGGACTGTAACACTCA
7416475 TTTATATTAATTTTA
1 TTTATATTAATTTTA
7416490 AATTAAATTT
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 58 1.00
ACGTcount: A:0.36, C:0.10, G:0.09, T:0.45
Consensus pattern (47 bp):
TTTATATTAATTTTATTAGATCAGTTTAAATAGGACTGTAACACTCA
Found at i:7416546 original size:90 final size:91
Alignment explanation
Indices: 7416438--7416603 Score: 246
Period size: 90 Copynumber: 1.8 Consensus size: 91
7416428 TTTATATTAA
* * *
7416438 TTTTATTATATCAGTTTAAATAGGACTGTAACACTCA-TTTATATTAATTTTAAATTAAATT-TA
1 TTTTATTACATCAATTTAAATAGGACTCTAACACT-AGTTTATATTAATTTTAAATTAAATTATA
7416501 ATTTATTAAGAACAATTGACTTTAATT
65 ATTTATTAAGAACAATTGACTTTAATT
* * * *
7416528 TTTTATTACATCAATTTAAGTAGGATTCTGACACTAGTTTATATTAATTTTAAATTAAATTATAT
1 TTTTATTACATCAATTTAAATAGGACTCTAACACTAGTTTATATTAATTTTAAATTAAATTATAA
7416593 TTTATTAAGAA
66 TTTATTAAGAA
7416604 TAGCTTACTT
Statistics
Matches: 67, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
89 1 0.01
90 53 0.79
91 13 0.19
ACGTcount: A:0.39, C:0.07, G:0.07, T:0.47
Consensus pattern (91 bp):
TTTTATTACATCAATTTAAATAGGACTCTAACACTAGTTTATATTAATTTTAAATTAAATTATAA
TTTATTAAGAACAATTGACTTTAATT
Found at i:7418110 original size:3 final size:3
Alignment explanation
Indices: 7418102--7418130 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
7418092 ACTCGTGAAT
7418102 ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
7418131 GCACCAGAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.31, G:0.00, T:0.34
Consensus pattern (3 bp):
ATC
Found at i:7419365 original size:45 final size:45
Alignment explanation
Indices: 7419314--7419404 Score: 182
Period size: 45 Copynumber: 2.0 Consensus size: 45
7419304 AAGAGCCAAG
7419314 GGCCGGTCACTTGAGGAAGGAAAAAGAAGAGAGAAGTCTTGGAGA
1 GGCCGGTCACTTGAGGAAGGAAAAAGAAGAGAGAAGTCTTGGAGA
7419359 GGCCGGTCACTTGAGGAAGGAAAAAGAAGAGAGAAGTCTTGGAGA
1 GGCCGGTCACTTGAGGAAGGAAAAAGAAGAGAGAAGTCTTGGAGA
7419404 G
1 G
7419405 TTAGAAATTT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.37, C:0.11, G:0.38, T:0.13
Consensus pattern (45 bp):
GGCCGGTCACTTGAGGAAGGAAAAAGAAGAGAGAAGTCTTGGAGA
Found at i:7419701 original size:36 final size:35
Alignment explanation
Indices: 7419662--7419747 Score: 100
Period size: 36 Copynumber: 2.4 Consensus size: 35
7419652 GAAAGAAAGG
* * *
7419662 AAAATAGAAAAAGCTGGGGTTGTGGTGGTTGGCGAGA
1 AAAAGAGAAAGAG-TGGGGTTGTGGTGGTTGACG-GA
* *
7419699 AAAAGAGAAAGAGTTGGGTTGTGTTGGTTGACGGA
1 AAAAGAGAAAGAGTGGGGTTGTGGTGGTTGACGGA
*
7419734 AAAAGAGAGAGAGT
1 AAAAGAGAAAGAGT
7419748 TTGGTTTTTG
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
35 15 0.35
36 17 0.40
37 11 0.26
ACGTcount: A:0.36, C:0.03, G:0.40, T:0.21
Consensus pattern (35 bp):
AAAAGAGAAAGAGTGGGGTTGTGGTGGTTGACGGA
Found at i:7419747 original size:35 final size:36
Alignment explanation
Indices: 7419678--7419753 Score: 109
Period size: 35 Copynumber: 2.1 Consensus size: 36
7419668 GAAAAAGCTG
*
7419678 GGGTTGTGGTGGTTGGCGAGAAAAAGAGAAAGAGTT
1 GGGTTGTGGTGGTTGACGAGAAAAAGAGAAAGAGTT
* *
7419714 GGGTTGTGTTGGTTGACG-GAAAAAGAGAGAGAGTT
1 GGGTTGTGGTGGTTGACGAGAAAAAGAGAAAGAGTT
*
7419749 TGGTT
1 GGGTT
7419754 TTTGGTGACA
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
35 20 0.56
36 16 0.44
ACGTcount: A:0.28, C:0.03, G:0.43, T:0.26
Consensus pattern (36 bp):
GGGTTGTGGTGGTTGACGAGAAAAAGAGAAAGAGTT
Found at i:7422358 original size:55 final size:51
Alignment explanation
Indices: 7422259--7422364 Score: 151
Period size: 55 Copynumber: 2.0 Consensus size: 51
7422249 CCAAAGCCGC
*
7422259 AAGAAAGAGTAATAAGAGTAATAGTCCTTCAAGGACTGG-TTTTTTTGTTT
1 AAGAAAGAGTAATAAGAGTAATAGTCCTTCAAGGACTGGCTTTTTCTGTTT
7422309 AAGAAAGAGTAATAAGAGTAACAGAATAGTCCTTCAAGGACTGGCTTTTTCTGTTT
1 AAGAAAGAGTAATAAGAGT-----AATAGTCCTTCAAGGACTGGCTTTTTCTGTTT
7422365 TGGACATGGG
Statistics
Matches: 49, Mismatches: 1, Indels: 6
0.88 0.02 0.11
Matches are distributed among these distances:
50 19 0.39
55 20 0.41
56 10 0.20
ACGTcount: A:0.35, C:0.10, G:0.22, T:0.33
Consensus pattern (51 bp):
AAGAAAGAGTAATAAGAGTAATAGTCCTTCAAGGACTGGCTTTTTCTGTTT
Found at i:7431244 original size:15 final size:15
Alignment explanation
Indices: 7431224--7431269 Score: 67
Period size: 15 Copynumber: 3.1 Consensus size: 15
7431214 ACTTTATAAT
7431224 GTAATGTGATTGCAG
1 GTAATGTGATTGCAG
7431239 GTAATGTGATTGC-G
1 GTAATGTGATTGCAG
*
7431253 AATAATGTGATTGCAG
1 -GTAATGTGATTGCAG
7431269 G
1 G
7431270 GAAGATAACA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
14 1 0.04
15 25 0.93
16 1 0.04
ACGTcount: A:0.28, C:0.07, G:0.33, T:0.33
Consensus pattern (15 bp):
GTAATGTGATTGCAG
Found at i:7434171 original size:64 final size:64
Alignment explanation
Indices: 7434050--7434172 Score: 192
Period size: 64 Copynumber: 1.9 Consensus size: 64
7434040 TAACACTATT
* ** * *
7434050 AAAATATCAATATTTATCAATTATTTAAGACATCCAAAACCTATGTTTATGTGTATTCACTGTA
1 AAAATATCAATATTTATCAATTATATAAGACATCCAAAACCTATACTTATATCTATTCACTGTA
*
7434114 AAAATATCAATATTTATCAATTATATAAGACATTCAAAACCTATACTTATATCTATTCA
1 AAAATATCAATATTTATCAATTATATAAGACATCCAAAACCTATACTTATATCTATTCA
7434173 TTAAACGATG
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
64 53 1.00
ACGTcount: A:0.42, C:0.15, G:0.05, T:0.38
Consensus pattern (64 bp):
AAAATATCAATATTTATCAATTATATAAGACATCCAAAACCTATACTTATATCTATTCACTGTA
Found at i:7434347 original size:59 final size:61
Alignment explanation
Indices: 7434272--7434402 Score: 195
Period size: 59 Copynumber: 2.2 Consensus size: 61
7434262 GTTTCATTAA
*
7434272 AAAATATA-TTTT-AATTTTAATAGTATTGAA-AATTTTAAATATT-AATA-TTTTAAGTT
1 AAAATATATTTTTAAATTTTAATAGTATTGAATAATTTAAAATATTAAATATTTTTAAGTT
7434328 NAAAATATATTTTTAAATTTTAATAGTATTGAATAATTTAAAATATTAAATATTTTTAAGTT
1 -AAAATATATTTTTAAATTTTAATAGTATTGAATAATTTAAAATATTAAATATTTTTAAGTT
7434390 AAAA-AT-TTTTTAA
1 AAAATATATTTTTAA
7434403 GTTAAATATT
Statistics
Matches: 68, Mismatches: 1, Indels: 8
0.88 0.01 0.10
Matches are distributed among these distances:
57 8 0.12
58 4 0.06
59 25 0.37
60 14 0.21
61 8 0.12
62 9 0.13
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (61 bp):
AAAATATATTTTTAAATTTTAATAGTATTGAATAATTTAAAATATTAAATATTTTTAAGTT
Found at i:7434399 original size:16 final size:17
Alignment explanation
Indices: 7434375--7434408 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
7434365 TTAAAATATT
7434375 AAATATTTTTAAGTTAA
1 AAATATTTTTAAGTTAA
7434392 AAAT-TTTTTAAGTTAA
1 AAATATTTTTAAGTTAA
7434408 A
1 A
7434409 TATTAATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (17 bp):
AAATATTTTTAAGTTAA
Found at i:7434423 original size:38 final size:40
Alignment explanation
Indices: 7434368--7434457 Score: 105
Period size: 40 Copynumber: 2.3 Consensus size: 40
7434358 GAATAATTTA
*
7434368 AAATATTAA-ATATTTTTAA-GTTAAAAATTTTTTAAGTT
1 AAATATTAATATATTTTTAATGTTAAAAATATTTTAAGTT
* ***
7434406 AAATATTAATATA-TTTTAATTTTTTTTAATATTTTAAGTT
1 AAATATTAATATATTTTTAA-TGTTAAAAATATTTTAAGTT
7434446 AAATATTAATAT
1 AAATATTAATAT
7434458 TCATTAATCT
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
38 15 0.34
39 3 0.07
40 26 0.59
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.53
Consensus pattern (40 bp):
AAATATTAATATATTTTTAATGTTAAAAATATTTTAAGTT
Found at i:7434427 original size:61 final size:59
Alignment explanation
Indices: 7434271--7434448 Score: 158
Period size: 59 Copynumber: 3.1 Consensus size: 59
7434261 GGTTTCATTA
* *
7434271 AAAAATATA-TTTT-AATTTTAATAGTATTGAA-AATTTTAAATATTAATATTTTAAGTT
1 AAAAATATATTTTTAAATATTAATAGTATT-AATAATTTAAAATATTAATATTTTAAGTT
* *
7434328 NAAAATATATTTTTAAATTTTAATAGTATTGAATAATTTAAAATATTAAATATTTTTAAGTT
1 AAAAATATATTTTTAAATATTAATAGTATT-AATAATTTAAAATATT-AATA-TTTTAAGTT
* * * *
7434390 AAAAAT-TTTTTAAGTTAAATATTAATA-TATT-TTAATTT---TTTTTAATATTTTAAGTT
1 AAAAATATATTT---TTAAATATTAATAGTATTAATAATTTAAAATATTAATATTTTAAGTT
7434446 AAA
1 AAA
7434449 TATTAATATT
Statistics
Matches: 105, Mismatches: 8, Indels: 17
0.81 0.06 0.13
Matches are distributed among these distances:
56 12 0.11
57 12 0.11
58 7 0.07
59 18 0.17
60 12 0.11
61 14 0.13
62 14 0.13
63 4 0.04
64 12 0.11
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.51
Consensus pattern (59 bp):
AAAAATATATTTTTAAATATTAATAGTATTAATAATTTAAAATATTAATATTTTAAGTT
Found at i:7442718 original size:18 final size:17
Alignment explanation
Indices: 7442646--7442714 Score: 61
Period size: 18 Copynumber: 3.9 Consensus size: 17
7442636 ATTTATTTGG
*
7442646 TTTTTATTAATATTGAAA
1 TTTTTATTAA-ATTAAAA
*
7442664 TTCTTATTAAATTAAAA
1 TTTTTATTAAATTAAAA
*
7442681 -TTTTCTT-AATTGATAATA
1 TTTTTATTAAATT-A-AA-A
7442699 TTTTTATTAAATTAAA
1 TTTTTATTAAATTAAA
7442715 TATTAAATAT
Statistics
Matches: 41, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
15 4 0.10
16 6 0.15
17 8 0.20
18 12 0.29
19 7 0.17
20 4 0.10
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.54
Consensus pattern (17 bp):
TTTTTATTAAATTAAAA
Found at i:7443252 original size:55 final size:55
Alignment explanation
Indices: 7443192--7443474 Score: 223
Period size: 55 Copynumber: 5.1 Consensus size: 55
7443182 TTAAAGCCAA
** *
7443192 GTTGAAAATTGAAGTGTTACACATCATGTTCTAAAATTTAGTTGTTACACGTCAT
1 GTTGAAAATTGAAGTGTTACACATCATGTTGAAAAATTTAGTTGTTACACATCAT
* * * *
7443247 GTTGAAAATTTG-ATTGTTACACGTCATGTTG-AAAATTTAATTGTTACACACCAT
1 GTTGAAAA-TTGAAGTGTTACACATCATGTTGAAAAATTTAGTTGTTACACATCAT
* * * * * * **
7443301 GTTGAAAAATGTAATTGTTACACGTCATGTTGAAAAATGTACTTCTTACATGTCAT
1 GTTGAAAATTG-AAGTGTTACACATCATGTTGAAAAATTTAGTTGTTACACATCAT
* * * * *
7443357 ATTGAAAATT-TAGTTGTTACAGACCATGTTGAAAAATATAGTTGTTACACATCAT
1 GTTGAAAATTGAAG-TGTTACACATCATGTTGAAAAATTTAGTTGTTACACATCAT
* * * * ** * * **
7443412 GCTGAAGATT-TAGTTGTTATATGTTATGTTGAAAAATTTAGTTATTACATGTCAT
1 GTTGAAAATTGAAG-TGTTACACATCATGTTGAAAAATTTAGTTGTTACACATCAT
*
7443467 GATGAAAA
1 GTTGAAAA
7443475 AGTTATTATA
Statistics
Matches: 184, Mismatches: 39, Indels: 10
0.79 0.17 0.04
Matches are distributed among these distances:
53 2 0.01
54 29 0.16
55 125 0.68
56 28 0.15
ACGTcount: A:0.35, C:0.11, G:0.16, T:0.39
Consensus pattern (55 bp):
GTTGAAAATTGAAGTGTTACACATCATGTTGAAAAATTTAGTTGTTACACATCAT
Found at i:7443429 original size:110 final size:110
Alignment explanation
Indices: 7443206--7443474 Score: 294
Period size: 110 Copynumber: 2.4 Consensus size: 110
7443196 AAAATTGAAG
* ** * * * *
7443206 TGTTACACATCATGTTCTAAAATTTAGTTGTTACACGTCATGTTGAAAATTTGATTGTTACACGT
1 TGTTACACGTCATGTTGAAAAATTTAGTTATTACATGTCATATTGAAAATTTGATTGTTACACGC
* *
7443271 CATGTTGAAAATTTAATTGTTACACACCATGTTGAAAAATGTAAT
66 CATGTTGAAAATATAATTGTTACACACCATGCTGAAAAATGTAAT
* * *
7443316 TGTTACACGTCATGTTGAAAAATGTACTTCTTACATGTCATATTGAAAATTT-AGTTGTTACA-G
1 TGTTACACGTCATGTTGAAAAATTTAGTTATTACATGTCATATTGAAAATTTGA-TTGTTACACG
* * * * *
7443379 ACCATGTTGAAAAATATAGTTGTTACACATCATGCTG-AAGATTTAGT
65 -CCATGTTG-AAAATATAATTGTTACACACCATGCTGAAAAATGTAAT
* * *
7443426 TGTTATATGTTATGTTGAAAAATTTAGTTATTACATGTCATGA-TGAAAA
1 TGTTACACGTCATGTTGAAAAATTTAGTTATTACATGTCAT-ATTGAAAA
7443475 AGTTATTATA
Statistics
Matches: 133, Mismatches: 22, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
109 2 0.02
110 107 0.80
111 24 0.18
ACGTcount: A:0.34, C:0.11, G:0.16, T:0.39
Consensus pattern (110 bp):
TGTTACACGTCATGTTGAAAAATTTAGTTATTACATGTCATATTGAAAATTTGATTGTTACACGC
CATGTTGAAAATATAATTGTTACACACCATGCTGAAAAATGTAAT
Found at i:7443463 original size:28 final size:28
Alignment explanation
Indices: 7443206--7443475 Score: 264
Period size: 28 Copynumber: 9.8 Consensus size: 28
7443196 AAAATTGAAG
* **
7443206 TGTTACACATCATGTTCTAAAATTTAGT
1 TGTTACACGTCATGTTGAAAAATTTAGT
7443234 TGTTACACGTCATGTTG-AAAATTT-GAT
1 TGTTACACGTCATGTTGAAAAATTTAG-T
*
7443261 TGTTACACGTCATGTTG-AAAATTTAAT
1 TGTTACACGTCATGTTGAAAAATTTAGT
** * *
7443288 TGTTACACACCATGTTGAAAAATGTAAT
1 TGTTACACGTCATGTTGAAAAATTTAGT
* *
7443316 TGTTACACGTCATGTTGAAAAATGTACT
1 TGTTACACGTCATGTTGAAAAATTTAGT
* * *
7443344 TCTTACATGTCATATTG-AAAATTTAGT
1 TGTTACACGTCATGTTGAAAAATTTAGT
* *
7443371 TGTTACA-GACCATGTTGAAAAATATAGT
1 TGTTACACG-TCATGTTGAAAAATTTAGT
* * *
7443399 TGTTACACATCATGCTG-AAGATTTAGT
1 TGTTACACGTCATGTTGAAAAATTTAGT
* * *
7443426 TGTTATATGTTATGTTGAAAAATTTAGT
1 TGTTACACGTCATGTTGAAAAATTTAGT
* * *
7443454 TATTACATGTCATGATGAAAAA
1 TGTTACACGTCATGTTGAAAAA
7443476 GTTATTATAC
Statistics
Matches: 202, Mismatches: 33, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
26 2 0.01
27 88 0.44
28 112 0.55
ACGTcount: A:0.34, C:0.11, G:0.16, T:0.39
Consensus pattern (28 bp):
TGTTACACGTCATGTTGAAAAATTTAGT
Found at i:7443473 original size:83 final size:81
Alignment explanation
Indices: 7443224--7443475 Score: 281
Period size: 83 Copynumber: 3.0 Consensus size: 81
7443214 ATCATGTTCT
* * *
7443224 AAAATTTAGTTGTTACACGTCATGTTGAAAATTT-GATTGTTACACGTCATGTTGAAAATTTAAT
1 AAAATATAGTTGTTACACGTCATGTTGAAAATTTAG-TTGTTACATGTCATGTTGAAAATTTAGT
*
7443288 TGTTACACACCATGTTGA
65 TGTTACA-GCCATGTTGA
* * * * * *
7443306 AAAATGTAATTGTTACACGTCATGTTGAAAAATGTACTTCTTACATGTCATATTGAAAATTTAGT
1 AAAATATAGTTGTTACACGTCATGTTG-AAAATTTAGTTGTTACATGTCATGTTGAAAATTTAGT
7443371 TGTTACAGACCATGTTGA
65 TGTTACAG-CCATGTTGA
* * * * *
7443389 AAAATATAGTTGTTACACATCATGCTGAAGATTTAGTTGTTATATGTTATGTTGAAAAATTTAGT
1 AAAATATAGTTGTTACACGTCATGTTGAAAATTTAGTTGTTACATGTCATGTTG-AAAATTTAGT
* * *
7443454 TATTACATGTCATGATGA
65 TGTTACA-GCCATGTTGA
7443472 AAAA
1 AAAA
7443476 GTTATTATAC
Statistics
Matches: 142, Mismatches: 23, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
82 45 0.32
83 96 0.68
84 1 0.01
ACGTcount: A:0.35, C:0.10, G:0.16, T:0.38
Consensus pattern (81 bp):
AAAATATAGTTGTTACACGTCATGTTGAAAATTTAGTTGTTACATGTCATGTTGAAAATTTAGTT
GTTACAGCCATGTTGA
Found at i:7448711 original size:61 final size:61
Alignment explanation
Indices: 7448616--7448752 Score: 265
Period size: 61 Copynumber: 2.2 Consensus size: 61
7448606 AATAGACTCT
*
7448616 TGATAAGTATTGGTTGATTGTGCTAACCTGCCAAAGGCACTTGTTTCTCTTCAAATTTTAA
1 TGATAAGTATTGGTTGATTGTGCTAACCTGCCAAAGGCACTTGTTTCTCTTCAAAATTTAA
7448677 TGATAAGTATTGGTTGATTGTGCTAACCTGCCAAAGGCACTTGTTTCTCTTCAAAATTTAA
1 TGATAAGTATTGGTTGATTGTGCTAACCTGCCAAAGGCACTTGTTTCTCTTCAAAATTTAA
7448738 TGATAAGTATTGGTT
1 TGATAAGTATTGGTT
7448753 AGTAAGACTG
Statistics
Matches: 75, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
61 75 1.00
ACGTcount: A:0.27, C:0.15, G:0.19, T:0.39
Consensus pattern (61 bp):
TGATAAGTATTGGTTGATTGTGCTAACCTGCCAAAGGCACTTGTTTCTCTTCAAAATTTAA
Found at i:7451708 original size:32 final size:35
Alignment explanation
Indices: 7451671--7451743 Score: 98
Period size: 35 Copynumber: 2.2 Consensus size: 35
7451661 CTTATTCTAA
* *
7451671 TTGTTCT-GCT-TT-TGCGTGAAGTAGCGCTTCAC
1 TTGTTCTAGCTATTCTGCATGAAGTAGAGCTTCAC
*
7451703 TTGTTCTAGTTATTCTGCATGAAGTAGAGCTTCAC
1 TTGTTCTAGCTATTCTGCATGAAGTAGAGCTTCAC
7451738 TTGTTC
1 TTGTTC
7451744 AGGTTGTTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
32 7 0.20
33 2 0.06
34 2 0.06
35 24 0.69
ACGTcount: A:0.16, C:0.19, G:0.22, T:0.42
Consensus pattern (35 bp):
TTGTTCTAGCTATTCTGCATGAAGTAGAGCTTCAC
Found at i:7451962 original size:30 final size:30
Alignment explanation
Indices: 7451920--7451995 Score: 82
Period size: 30 Copynumber: 2.5 Consensus size: 30
7451910 GTATTGTATC
* * *
7451920 ACTTT-GAGCAGTAATGCCTTAGGCAATACT
1 ACTTTAGA-CAGTAATACCTTAGCCAATAAT
* *
7451950 ACTTTAGACAGTAACACCTTAGCCAGTAAT
1 ACTTTAGACAGTAATACCTTAGCCAATAAT
*
7451980 GCTTTAGACAGTAATA
1 ACTTTAGACAGTAATA
7451996 TCTTGTATAA
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
30 36 0.95
31 2 0.05
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (30 bp):
ACTTTAGACAGTAATACCTTAGCCAATAAT
Found at i:7451994 original size:15 final size:15
Alignment explanation
Indices: 7451928--7451995 Score: 55
Period size: 15 Copynumber: 4.5 Consensus size: 15
7451918 TCACTTTGAG
* *
7451928 CAGTAATGCCTTAGG
1 CAGTAATACCTTAGA
* * *
7451943 CAATACTACTTTAGA
1 CAGTAATACCTTAGA
* *
7451958 CAGTAACACCTTAGC
1 CAGTAATACCTTAGA
* *
7451973 CAGTAATGCTTTAGA
1 CAGTAATACCTTAGA
7451988 CAGTAATA
1 CAGTAATA
7451996 TCTTGTATAA
Statistics
Matches: 38, Mismatches: 15, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
15 38 1.00
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.28
Consensus pattern (15 bp):
CAGTAATACCTTAGA
Found at i:7452085 original size:41 final size:40
Alignment explanation
Indices: 7452038--7452169 Score: 151
Period size: 41 Copynumber: 3.2 Consensus size: 40
7452028 TTGTAATGTC
7452038 AATATCTTTTGTAATATTTGATTGATTATTCAATAATATTT
1 AATATCTTTTGTAATATTTGATTGATTATT-AATAATATTT
* * ** *
7452079 AATATCTTTCGTAATATTTGATTGCATT-TT-TTTTTATGTC
1 AATATCTTTTGTAATATTTGATTG-ATTATTAATAATAT-TT
*
7452119 AATATCTTTTGTAATATTTTATTGATTATGTAATAATATTT
1 AATATCTTTTGTAATATTTGATTGATTAT-TAATAATATTT
*
7452160 AATATATTTT
1 AATATCTTTT
7452170 TCATAAAAAA
Statistics
Matches: 74, Mismatches: 12, Indels: 10
0.77 0.12 0.10
Matches are distributed among these distances:
39 7 0.09
40 24 0.32
41 36 0.49
42 7 0.09
ACGTcount: A:0.31, C:0.05, G:0.08, T:0.56
Consensus pattern (40 bp):
AATATCTTTTGTAATATTTGATTGATTATTAATAATATTT
Found at i:7452133 original size:40 final size:39
Alignment explanation
Indices: 7452022--7452145 Score: 133
Period size: 41 Copynumber: 3.1 Consensus size: 39
7452012 ATACCAATTT
7452022 TTTTTTTTGTAATGTCAATATCTTTTGTAATATTTGATTGA
1 TTTTTTTT-T-ATGTCAATATCTTTTGTAATATTTGATTGA
* ** * *
7452063 TTATTCAATAATAT-TTAATATCTTTCGTAATATTTGATTGCA
1 TT-TT--TTTTTATGTCAATATCTTTTGTAATATTTGATTG-A
*
7452105 TTTTTTTTTATGTCAATATCTTTTGTAATATTTTATTGA
1 TTTTTTTTTATGTCAATATCTTTTGTAATATTTGATTGA
7452144 TT
1 TT
7452146 ATGTAATAAT
Statistics
Matches: 67, Mismatches: 11, Indels: 12
0.74 0.12 0.13
Matches are distributed among these distances:
39 7 0.10
40 23 0.34
41 28 0.42
42 7 0.10
43 1 0.01
44 1 0.01
ACGTcount: A:0.27, C:0.06, G:0.09, T:0.58
Consensus pattern (39 bp):
TTTTTTTTTATGTCAATATCTTTTGTAATATTTGATTGA
Found at i:7452198 original size:65 final size:66
Alignment explanation
Indices: 7452126--7452257 Score: 221
Period size: 65 Copynumber: 2.0 Consensus size: 66
7452116 GTCAATATCT
* * *
7452126 TTTGTAATATTTTATTGATTATGTAATAATATTTAATATATTTTTCATAAAAAACCTT-GATTCT
1 TTTGTAATATTTTATTAATTATGCAATAATATTTAATATATTTTTCATAAAAAAACTTGGATTCT
7452190 A
66 A
*
7452191 TTTGTAATATTTTATTAATTATGCAATAATATTTAATATCTTTTTCATAAAAAAACTTGGATTCT
1 TTTGTAATATTTTATTAATTATGCAATAATATTTAATATATTTTTCATAAAAAAACTTGGATTCT
7452256 A
66 A
7452257 T
1 T
7452258 GTGACTTATA
Statistics
Matches: 62, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
65 54 0.87
66 8 0.13
ACGTcount: A:0.37, C:0.07, G:0.06, T:0.50
Consensus pattern (66 bp):
TTTGTAATATTTTATTAATTATGCAATAATATTTAATATATTTTTCATAAAAAAACTTGGATTCT
A
Found at i:7452412 original size:15 final size:16
Alignment explanation
Indices: 7452375--7452412 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
7452365 TTCTGTTGTA
*
7452375 ATTTTTTGTTTTATTT
1 ATTTTTTATTTTATTT
7452391 -TTTTTTATTTT-TTT
1 ATTTTTTATTTTATTT
7452405 ATTTTTTA
1 ATTTTTTA
7452413 AATGAATTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
14 3 0.15
15 17 0.85
ACGTcount: A:0.13, C:0.00, G:0.03, T:0.84
Consensus pattern (16 bp):
ATTTTTTATTTTATTT
Found at i:7453070 original size:35 final size:35
Alignment explanation
Indices: 7453024--7453100 Score: 100
Period size: 35 Copynumber: 2.2 Consensus size: 35
7453014 GAGCTTTTTT
* * ** *
7453024 TTTTAATCAGAGCTCGCGGTATGTACCGCGAGCTC
1 TTTTAAGCAGAGCTCGCAGTACATACCACGAGCTC
*
7453059 TTTTAAGCAGAGCTCGCAGTACATGCCACGAGCTC
1 TTTTAAGCAGAGCTCGCAGTACATACCACGAGCTC
7453094 TTTTAAG
1 TTTTAAG
7453101 TGAGCAGCTT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.29
Consensus pattern (35 bp):
TTTTAAGCAGAGCTCGCAGTACATACCACGAGCTC
Found at i:7453091 original size:74 final size:74
Alignment explanation
Indices: 7452960--7453097 Score: 168
Period size: 74 Copynumber: 1.9 Consensus size: 74
7452950 TTTAGTTTGC
* * *** * * * * *
7452960 AGCTCGCGGTATGTGCTGCGAGCTCTTTCAATTGGAGCTCACGGTTCATTCCGCGAGCTTTTTTT
1 AGCTCGCGGTATGTACCGCGAGCTCTTTCAAGCAGAGCTCACAGTACATGCCACGAGCTCTTTTT
7453025 TTTAATCAG
66 TTTAATCAG
* *
7453034 AGCTCGCGGTATGTACCGCGAGCTCTTTTAAGCAGAGCTCGCAGTACATGCCACGAGCTCTTTT
1 AGCTCGCGGTATGTACCGCGAGCTCTTTCAAGCAGAGCTCACAGTACATGCCACGAGCTCTTTT
7453098 AAGTGAGCAG
Statistics
Matches: 52, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
74 52 1.00
ACGTcount: A:0.18, C:0.25, G:0.25, T:0.32
Consensus pattern (74 bp):
AGCTCGCGGTATGTACCGCGAGCTCTTTCAAGCAGAGCTCACAGTACATGCCACGAGCTCTTTTT
TTTAATCAG
Found at i:7454297 original size:28 final size:29
Alignment explanation
Indices: 7454247--7454316 Score: 72
Period size: 29 Copynumber: 2.4 Consensus size: 29
7454237 GACTTGTTCT
7454247 CAAGTAAAAGGTAATAGAAAAG-AGATATA
1 CAAG-AAAAGGTAATAGAAAAGAAGATATA
* *
7454276 CAAGAAAAGGTACA-AGAGAAGAAGCTATA
1 CAAGAAAAGGTA-ATAGAAAAGAAGATATA
* *
7454305 CATGAATAGGTA
1 CAAGAAAAGGTA
7454317 TACGAGAACA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
28 14 0.40
29 21 0.60
ACGTcount: A:0.54, C:0.07, G:0.23, T:0.16
Consensus pattern (29 bp):
CAAGAAAAGGTAATAGAAAAGAAGATATA
Found at i:7454587 original size:35 final size:35
Alignment explanation
Indices: 7454548--7454679 Score: 147
Period size: 35 Copynumber: 3.8 Consensus size: 35
7454538 TTCCATATGG
* * *
7454548 AGTAGTGCTTTACTTATTCTAGTTGTTCTGCTTTA
1 AGTAGTGCTTCACTTATTCTAGTTGTTCTGCGTGA
* * *
7454583 AGTAGTACTCCACTTATTCTAGTTGTTTTGCGTGA
1 AGTAGTGCTTCACTTATTCTAGTTGTTCTGCGTGA
* * *
7454618 AGTAGCGCTTCACTTGTTCTAGTTATTCTGCGTGA
1 AGTAGTGCTTCACTTATTCTAGTTGTTCTGCGTGA
** * *
7454653 AGTAGCACTTCACTTGTTCAAGTTGTT
1 AGTAGTGCTTCACTTATTCTAGTTGTT
7454680 TTCTGTACAA
Statistics
Matches: 82, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 82 1.00
ACGTcount: A:0.19, C:0.17, G:0.20, T:0.44
Consensus pattern (35 bp):
AGTAGTGCTTCACTTATTCTAGTTGTTCTGCGTGA
Found at i:7454638 original size:70 final size:70
Alignment explanation
Indices: 7454548--7454681 Score: 178
Period size: 70 Copynumber: 1.9 Consensus size: 70
7454538 TTCCATATGG
* * * * * * *
7454548 AGTAGTGCTTTACTTATTCTAGTTGTTCTGCTTTAAGTAGTACTCCACTTATTCTAGTTGTTTTG
1 AGTAGCGCTTCACTTATTCTAGTTATTCTGCGTGAAGTAGCACTCCACTTATTCAAGTTGTTTTG
7454613 CGTGA
66 CGTGA
* * *
7454618 AGTAGCGCTTCACTTGTTCTAGTTATTCTGCGTGAAGTAGCACTTCACTTGTTCAAGTTGTTTT
1 AGTAGCGCTTCACTTATTCTAGTTATTCTGCGTGAAGTAGCACTCCACTTATTCAAGTTGTTTT
7454682 CTGTACAATA
Statistics
Matches: 54, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
70 54 1.00
ACGTcount: A:0.19, C:0.17, G:0.19, T:0.45
Consensus pattern (70 bp):
AGTAGCGCTTCACTTATTCTAGTTATTCTGCGTGAAGTAGCACTCCACTTATTCAAGTTGTTTTG
CGTGA
Found at i:7465266 original size:38 final size:38
Alignment explanation
Indices: 7465166--7465288 Score: 147
Period size: 38 Copynumber: 3.2 Consensus size: 38
7465156 TGATAAGTGT
* * *
7465166 ACAATTATTAATCCTTGAAGGGTGCTCTTTATAATAGC
1 ACAATTATTGATCCTTAAAAGGTGCTCTTTATAATAGC
** * *
7465204 ACCATATTATTGATCCTTGGAAGGTGCTTTTTATAATAGT
1 A-CA-ATTATTGATCCTTAAAAGGTGCTCTTTATAATAGC
* *
7465244 ACAATTGTTGATCTTTAAAAGGTGCTCTTTATAATAGC
1 ACAATTATTGATCCTTAAAAGGTGCTCTTTATAATAGC
7465282 ACAATTA
1 ACAATTA
7465289 AAAATCATCA
Statistics
Matches: 71, Mismatches: 12, Indels: 4
0.82 0.14 0.05
Matches are distributed among these distances:
38 36 0.51
39 4 0.06
40 31 0.44
ACGTcount: A:0.32, C:0.14, G:0.15, T:0.39
Consensus pattern (38 bp):
ACAATTATTGATCCTTAAAAGGTGCTCTTTATAATAGC
Found at i:7469746 original size:16 final size:16
Alignment explanation
Indices: 7469725--7469773 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
7469715 TAAATCAAAC
7469725 ATAATTTTTAAAAAGA
1 ATAATTTTTAAAAAGA
*
7469741 ATAATTTTTTTTAAAAATA
1 ATAA---TTTTTAAAAAGA
*
7469760 AAAATTTTTAAAAA
1 ATAATTTTTAAAAA
7469774 AAACTTTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
16 14 0.50
19 14 0.50
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (16 bp):
ATAATTTTTAAAAAGA
Found at i:7469753 original size:19 final size:19
Alignment explanation
Indices: 7469729--7469768 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
7469719 TCAAACATAA
*
7469729 TTTTTAAAAAGAATAATTT
1 TTTTTAAAAAGAAAAATTT
*
7469748 TTTTTAAAAATAAAAATTT
1 TTTTTAAAAAGAAAAATTT
7469767 TT
1 TT
7469769 AAAAAAAACT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (19 bp):
TTTTTAAAAAGAAAAATTT
Found at i:7472574 original size:24 final size:23
Alignment explanation
Indices: 7472513--7472571 Score: 73
Period size: 24 Copynumber: 2.5 Consensus size: 23
7472503 CGGAAAGGAT
*
7472513 GATGACACAGGGCTTGGGTTGTAA
1 GATGA-ACAGGGCTTGGGTGGTAA
* *
7472537 GAAGCACAAGGGCTTGGGTGGTAA
1 GATGAAC-AGGGCTTGGGTGGTAA
7472561 GATGAACAGGG
1 GATGAACAGGG
7472572 GCTCATTGTT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
23 6 0.21
24 23 0.79
ACGTcount: A:0.29, C:0.12, G:0.41, T:0.19
Consensus pattern (23 bp):
GATGAACAGGGCTTGGGTGGTAA
Found at i:7493125 original size:18 final size:17
Alignment explanation
Indices: 7493098--7493131 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
7493088 GACAAAACAT
7493098 CAAGCAACAGCAACAAC
1 CAAGCAACAGCAACAAC
7493115 CAAGTCAACAGCAACAA
1 CAAG-CAACAGCAACAA
7493132 TTAAAGAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.53, C:0.32, G:0.12, T:0.03
Consensus pattern (17 bp):
CAAGCAACAGCAACAAC
Found at i:7495115 original size:41 final size:41
Alignment explanation
Indices: 7495070--7495152 Score: 103
Period size: 41 Copynumber: 2.0 Consensus size: 41
7495060 CATATTAAGT
* * * * *
7495070 TATTAAATTGAACTATTGAGATAAAATATTTTATGATAGAC
1 TATTAAATTAAACAACTAAGATAAAATATGTTATGATAGAC
* *
7495111 TATTAAGTTAAACAACTAAGATATAATATGTTATGATAGAC
1 TATTAAATTAAACAACTAAGATAAAATATGTTATGATAGAC
7495152 T
1 T
7495153 TAGATTTATA
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.45, C:0.06, G:0.12, T:0.37
Consensus pattern (41 bp):
TATTAAATTAAACAACTAAGATAAAATATGTTATGATAGAC
Found at i:7495376 original size:17 final size:18
Alignment explanation
Indices: 7495350--7495384 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
7495340 CCCAAGCCAT
7495350 TAAAAATATA-TAAAAAA
1 TAAAAATATATTAAAAAA
*
7495367 TAAAATTATATTAAAAAA
1 TAAAAATATATTAAAAAA
7495385 AATATAATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (18 bp):
TAAAAATATATTAAAAAA
Found at i:7495590 original size:15 final size:17
Alignment explanation
Indices: 7495565--7495598 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
7495555 TTTATTTTTA
7495565 AAAATTAAAATC-ATAT
1 AAAATTAAAATCTATAT
7495581 AAAA-TAAAATCTATAT
1 AAAATTAAAATCTATAT
7495597 AA
1 AA
7495599 CAGAAAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (17 bp):
AAAATTAAAATCTATAT
Found at i:7495760 original size:18 final size:17
Alignment explanation
Indices: 7495722--7495772 Score: 54
Period size: 18 Copynumber: 3.1 Consensus size: 17
7495712 AAAATATATG
*
7495722 AATAAATAAATATAAAT
1 AATAAATAAATATAAAA
7495739 AATAATATAAAT-TAAAAA
1 AATAA-ATAAATAT-AAAA
7495757 AATAAA-AAA-ATAAAA
1 AATAAATAAATATAAAA
7495772 A
1 A
7495773 CTTGAAAATT
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
15 5 0.17
16 4 0.13
17 7 0.23
18 14 0.47
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (17 bp):
AATAAATAAATATAAAA
Found at i:7498668 original size:29 final size:29
Alignment explanation
Indices: 7498635--7498728 Score: 91
Period size: 29 Copynumber: 3.2 Consensus size: 29
7498625 AAGGTGATCC
7498635 CACGGTGGGATCACCTAGACCATGACTCA
1 CACGGTGGGATCACCTAGACCATGACTCA
** * * *** *
7498664 CACGGTTGGGAAAAGCGTGGAAGGTGA-TCC
1 CACGG-TGGGATCA-CCTAGACCATGACTCA
7498694 CACGGTGGGATCACCTAGACCATGACTCA
1 CACGGTGGGATCACCTAGACCATGACTCA
7498723 CACGGT
1 CACGGT
7498729 TGGAAAAAGT
Statistics
Matches: 46, Mismatches: 16, Indels: 6
0.68 0.24 0.09
Matches are distributed among these distances:
28 7 0.15
29 19 0.41
30 13 0.28
31 7 0.15
ACGTcount: A:0.27, C:0.27, G:0.30, T:0.17
Consensus pattern (29 bp):
CACGGTGGGATCACCTAGACCATGACTCA
Found at i:7498698 original size:30 final size:29
Alignment explanation
Indices: 7498612--7498703 Score: 78
Period size: 29 Copynumber: 3.1 Consensus size: 29
7498602 TTCCGATGTC
*
7498612 GGGAAAAGCGGGGAAGGTGATCCCACGGT
1 GGGAAAAGCGTGGAAGGTGATCCCACGGT
** * * *** *
7498641 GGGATCA-CCTAGACCATGACTCACACGGTT
1 GGGAAAAGCGTGGAAGGTGA-TCCCACGG-T
7498671 GGGAAAAGCGTGGAAGGTGATCCCACGGT
1 GGGAAAAGCGTGGAAGGTGATCCCACGGT
7498700 GGGA
1 GGGA
7498704 TCACCTAGAC
Statistics
Matches: 43, Mismatches: 17, Indels: 6
0.65 0.26 0.09
Matches are distributed among these distances:
28 6 0.14
29 17 0.40
30 13 0.30
31 7 0.16
ACGTcount: A:0.27, C:0.21, G:0.38, T:0.14
Consensus pattern (29 bp):
GGGAAAAGCGTGGAAGGTGATCCCACGGT
Found at i:7498704 original size:59 final size:59
Alignment explanation
Indices: 7498612--7498737 Score: 234
Period size: 59 Copynumber: 2.1 Consensus size: 59
7498602 TTCCGATGTC
7498612 GGGAAAAGCGGGGAAGGTGATCCCACGGTGGGATCACCTAGACCATGACTCACACGGTT
1 GGGAAAAGCGGGGAAGGTGATCCCACGGTGGGATCACCTAGACCATGACTCACACGGTT
*
7498671 GGGAAAAGCGTGGAAGGTGATCCCACGGTGGGATCACCTAGACCATGACTCACACGGTT
1 GGGAAAAGCGGGGAAGGTGATCCCACGGTGGGATCACCTAGACCATGACTCACACGGTT
*
7498730 GGAAAAAG
1 GGGAAAAG
7498738 TTGGGAGGTT
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
59 65 1.00
ACGTcount: A:0.29, C:0.22, G:0.33, T:0.15
Consensus pattern (59 bp):
GGGAAAAGCGGGGAAGGTGATCCCACGGTGGGATCACCTAGACCATGACTCACACGGTT
Found at i:7500918 original size:23 final size:24
Alignment explanation
Indices: 7500870--7500918 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
7500860 GTTTTTTTAA
7500870 AATAATATTTATTTTTAAATGCTATT
1 AATAATATTTATTTTTAAA--CTATT
7500896 AATAATATTTATTTTTAAA-TATT
1 AATAATATTTATTTTTAAACTATT
7500919 TTAAAATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 4 0.17
26 19 0.83
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (24 bp):
AATAATATTTATTTTTAAACTATT
Found at i:7501518 original size:2 final size:2
Alignment explanation
Indices: 7501511--7501537 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7501501 GGGTGCTATC
7501511 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
7501538 TATTCCAATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7514519 original size:18 final size:18
Alignment explanation
Indices: 7514498--7514537 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
7514488 TATCATTAAT
*
7514498 TTATGAGTTATTTATAAA
1 TTATGAGTTACTTATAAA
*
7514516 TTATGTGTTACTTATAAA
1 TTATGAGTTACTTATAAA
7514534 TTAT
1 TTAT
7514538 TTGTGAAACT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.35, C:0.03, G:0.10, T:0.53
Consensus pattern (18 bp):
TTATGAGTTACTTATAAA
Found at i:7516646 original size:47 final size:47
Alignment explanation
Indices: 7516577--7516671 Score: 190
Period size: 47 Copynumber: 2.0 Consensus size: 47
7516567 TGTGGTTGAA
7516577 GTGTGCATGCCAGTTGGAACTCAAGTCCCTAACAGATATAAGCGCAT
1 GTGTGCATGCCAGTTGGAACTCAAGTCCCTAACAGATATAAGCGCAT
7516624 GTGTGCATGCCAGTTGGAACTCAAGTCCCTAACAGATATAAGCGCAT
1 GTGTGCATGCCAGTTGGAACTCAAGTCCCTAACAGATATAAGCGCAT
7516671 G
1 G
7516672 ATGAAGGTTG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.23
Consensus pattern (47 bp):
GTGTGCATGCCAGTTGGAACTCAAGTCCCTAACAGATATAAGCGCAT
Found at i:7522781 original size:32 final size:32
Alignment explanation
Indices: 7522740--7522836 Score: 97
Period size: 32 Copynumber: 3.0 Consensus size: 32
7522730 TAAAAAAAAT
*
7522740 CTTCCTAATAGACTAATGA-TAAAACACACCAA
1 CTTCCTAATAGAATAAT-ACTAAAACACACCAA
* * *
7522772 CTTCTTAATAGAATTATACTAAAACATACCAA
1 CTTCCTAATAGAATAATACTAAAACACACCAA
* * * * *
7522804 CTTCCTAATGGAGTTATACCAAAACACATCAA
1 CTTCCTAATAGAATAATACTAAAACACACCAA
7522836 C
1 C
7522837 AAACTATTTA
Statistics
Matches: 54, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
31 1 0.02
32 53 0.98
ACGTcount: A:0.44, C:0.24, G:0.06, T:0.26
Consensus pattern (32 bp):
CTTCCTAATAGAATAATACTAAAACACACCAA
Found at i:7524258 original size:36 final size:36
Alignment explanation
Indices: 7524181--7524259 Score: 97
Period size: 36 Copynumber: 2.2 Consensus size: 36
7524171 ATGAGAGAAA
*
7524181 GTATTTAGAGGAAATAAGAAAATTTTATTCAAGTAT
1 GTATTTAGAGGAAATAAGAAAATTTTACTCAAGTAT
* * * *
7524217 ATATTTAGAGGGAGTAAGAAGATTTTACTCAAGGT-T
1 GTATTTAGAGGAAATAAGAAAATTTTACTCAA-GTAT
7524253 GTATTTA
1 GTATTTA
7524260 CAAATAAAGT
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
36 34 0.94
37 2 0.06
ACGTcount: A:0.39, C:0.04, G:0.20, T:0.37
Consensus pattern (36 bp):
GTATTTAGAGGAAATAAGAAAATTTTACTCAAGTAT
Found at i:7536759 original size:17 final size:17
Alignment explanation
Indices: 7536734--7536771 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
7536724 CCCAATAGGA
*
7536734 GGCCCAAGCACGTAGTT
1 GGCCAAAGCACGTAGTT
7536751 GGCCAAAGCACGTAGTT
1 GGCCAAAGCACGTAGTT
7536768 GGCC
1 GGCC
7536772 CAAGAATTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.24, C:0.29, G:0.32, T:0.16
Consensus pattern (17 bp):
GGCCAAAGCACGTAGTT
Found at i:7551943 original size:120 final size:124
Alignment explanation
Indices: 7551807--7552030 Score: 339
Period size: 127 Copynumber: 1.8 Consensus size: 124
7551797 TTTTTTTCCC
* * **
7551807 TTTTTTTCTTAGCTCAAATTTT-GAATTATTTTTC-T-TTTTTTTT-CTTATGTCATCTTTTGAT
1 TTTTTTTCATACCTCAAATTTTGGAATTATTTTTCTTCTTTTTTTTACTTAACTCATCTTTTGAT
* *
7551868 CGTAAAGATGGATTTAATTATTCAAGATTGATGACAATTATTTTTCTTTTTTTTCCTTT
66 CCTAAAAATGGATTTAATTATTCAAGATTGATGACAATTATTTTTCTTTTTTTTCCTTT
7551927 TTTTTTTCATACCTCAAATTTTGGAATTATTTTTCTTTTCTTTTTTTTACCTTAACTCATCTTTT
1 TTTTTTTCATACCTCAAATTTTGGAATTATTTTTC--TTCTTTTTTTTA-CTTAACTCATCTTTT
7551992 GATCCTAAAAATGGATTTAATTATTCAAGATTGATGACA
63 GATCCTAAAAATGGATTTAATTATTCAAGATTGATGACA
7552031 TCTGCAAGCT
Statistics
Matches: 91, Mismatches: 6, Indels: 7
0.88 0.06 0.07
Matches are distributed among these distances:
120 20 0.22
121 12 0.13
124 1 0.01
125 8 0.09
127 50 0.55
ACGTcount: A:0.24, C:0.12, G:0.08, T:0.55
Consensus pattern (124 bp):
TTTTTTTCATACCTCAAATTTTGGAATTATTTTTCTTCTTTTTTTTACTTAACTCATCTTTTGAT
CCTAAAAATGGATTTAATTATTCAAGATTGATGACAATTATTTTTCTTTTTTTTCCTTT
Found at i:7554360 original size:12 final size:11
Alignment explanation
Indices: 7554345--7554383 Score: 51
Period size: 12 Copynumber: 3.4 Consensus size: 11
7554335 TTCTTTTCTC
7554345 TTTTTTCCTTTG
1 TTTTTT-CTTTG
*
7554357 TTTTTTCTTTT
1 TTTTTTCTTTG
7554368 TTCTTTTCTTTG
1 TT-TTTTCTTTG
7554380 TTTT
1 TTTT
7554384 CATTCTCGCT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
11 8 0.33
12 16 0.67
ACGTcount: A:0.00, C:0.13, G:0.05, T:0.82
Consensus pattern (11 bp):
TTTTTTCTTTG
Found at i:7555373 original size:28 final size:29
Alignment explanation
Indices: 7555332--7555391 Score: 68
Period size: 30 Copynumber: 2.1 Consensus size: 29
7555322 GTCTATGGGC
*
7555332 AATTTTTCAATTTT-TGGGGCAAAAATGT
1 AATTTTTCAATTTTAGGGGGCAAAAATGT
* * *
7555360 AATTTTTGACTTTTACGGGGGCAAAAGTGT
1 AATTTTTCAATTTTA-GGGGGCAAAAATGT
7555390 AA
1 AA
7555392 ATTTCAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
28 12 0.46
30 14 0.54
ACGTcount: A:0.32, C:0.08, G:0.22, T:0.38
Consensus pattern (29 bp):
AATTTTTCAATTTTAGGGGGCAAAAATGT
Found at i:7580922 original size:11 final size:10
Alignment explanation
Indices: 7580906--7580957 Score: 59
Period size: 11 Copynumber: 4.8 Consensus size: 10
7580896 GTAGCCTCCA
7580906 CTTTTTCTTTT
1 CTTTTT-TTTT
7580917 CTTTTTTTTT
1 CTTTTTTTTT
*
7580927 CCTTTTTTTT
1 CTTTTTTTTT
7580937 CTTTTTTCTTTT
1 C-TTTTT-TTTT
7580949 CTTTGTTTT
1 CTTT-TTTT
7580958 CATGCCCGCT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
10 14 0.39
11 15 0.42
12 7 0.19
ACGTcount: A:0.00, C:0.15, G:0.02, T:0.83
Consensus pattern (10 bp):
CTTTTTTTTT
Found at i:7580931 original size:16 final size:15
Alignment explanation
Indices: 7580907--7580957 Score: 66
Period size: 16 Copynumber: 3.2 Consensus size: 15
7580897 TAGCCTCCAC
7580907 TTTTTCTTTTCTTTT
1 TTTTTCTTTTCTTTT
*
7580922 TTTTTCCTTTTTTTTCT
1 TTTTT-CTTTTCTTT-T
7580939 TTTTTCTTTTCTTTGT
1 TTTTTCTTTTCTTT-T
7580955 TTT
1 TTT
7580958 CATGCCCGCT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
15 5 0.16
16 20 0.65
17 6 0.19
ACGTcount: A:0.00, C:0.14, G:0.02, T:0.84
Consensus pattern (15 bp):
TTTTTCTTTTCTTTT
Found at i:7584202 original size:15 final size:15
Alignment explanation
Indices: 7584179--7584208 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7584169 ACCTATTCCC
*
7584179 TATTGTATTTATTAT
1 TATTATATTTATTAT
7584194 TATTATATTTATTAT
1 TATTATATTTATTAT
7584209 CATCACTATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (15 bp):
TATTATATTTATTAT
Found at i:7591053 original size:17 final size:16
Alignment explanation
Indices: 7591011--7591090 Score: 63
Period size: 18 Copynumber: 4.6 Consensus size: 16
7591001 TAATTTTCTG
*
7591011 TATTTTTTTAACATTTT
1 TATTTTTTTTAC-TTTT
7591028 T-TTAATTTTTTACTTTT
1 TATT--TTTTTTACTTTT
*
7591045 TATGTTTTTTGTAATTTT
1 TAT-TTTTTT-TACTTTT
*
7591063 ATATTTTTTATTACCTTT
1 -TATTTTTT-TTACTTTT
7591081 TATTTTTTTT
1 TATTTTTTTT
7591091 GTTGGGTACA
Statistics
Matches: 52, Mismatches: 4, Indels: 15
0.73 0.06 0.21
Matches are distributed among these distances:
16 4 0.08
17 19 0.37
18 24 0.46
19 5 0.10
ACGTcount: A:0.19, C:0.05, G:0.03, T:0.74
Consensus pattern (16 bp):
TATTTTTTTTACTTTT
Found at i:7591073 original size:26 final size:25
Alignment explanation
Indices: 7591024--7591073 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 25
7591014 TTTTTTAACA
*
7591024 TTTTTTTAATTTTTTACTTTTTATG
1 TTTTTTTAATTTTATACTTTTTATG
*
7591049 TTTTTTGTAATTTTATATTTTTTAT
1 TTTTTT-TAATTTTATACTTTTTAT
7591074 TACCTTTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 6 0.27
26 16 0.73
ACGTcount: A:0.18, C:0.02, G:0.04, T:0.76
Consensus pattern (25 bp):
TTTTTTTAATTTTATACTTTTTATG
Found at i:7597753 original size:7 final size:7
Alignment explanation
Indices: 7597734--7597792 Score: 57
Period size: 7 Copynumber: 8.3 Consensus size: 7
7597724 TCCAATTATA
*
7597734 TTATTTA
1 TTATTTT
7597741 TT-TTTT
1 TTATTTT
7597747 TTATTTT
1 TTATTTT
*
7597754 TTATTTA
1 TTATTTT
7597761 TTATTTT
1 TTATTTT
7597768 TTCCATTTT
1 TT--ATTTT
* *
7597777 TCATTTA
1 TTATTTT
7597784 TTATTTT
1 TTATTTT
7597791 TT
1 TT
7597793 TTAAAAAATA
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
6 5 0.12
7 31 0.74
9 6 0.14
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.78
Consensus pattern (7 bp):
TTATTTT
Found at i:7597764 original size:23 final size:23
Alignment explanation
Indices: 7597729--7597795 Score: 89
Period size: 23 Copynumber: 2.8 Consensus size: 23
7597719 ATTATTCCAA
7597729 TTATATTATTTATTTTTTTTATTTT
1 TTAT-TTA-TTATTTTTTTTATTTT
**
7597754 TTATTTATTATTTTTTCCATTTT
1 TTATTTATTATTTTTTTTATTTT
*
7597777 TCATTTATTATTTTTTTTA
1 TTATTTATTATTTTTTTTA
7597796 AAAAATATAT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
23 30 0.81
24 3 0.08
25 4 0.11
ACGTcount: A:0.19, C:0.04, G:0.00, T:0.76
Consensus pattern (23 bp):
TTATTTATTATTTTTTTTATTTT
Found at i:7597831 original size:3 final size:3
Alignment explanation
Indices: 7597823--7597851 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
7597813 CGCATCATGA
7597823 ATT ATT ATT ATT ATT ATT ATT -TT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
7597852 TGCAAGCCTC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 23 0.92
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
ATT
Found at i:7597928 original size:17 final size:16
Alignment explanation
Indices: 7597907--7597958 Score: 65
Period size: 15 Copynumber: 3.4 Consensus size: 16
7597897 CTTATTATCG
*
7597907 TTATTGTTATTATTTA
1 TTATTTTTATTATTTA
7597923 TATATTTTTATT-TTTA
1 T-TATTTTTATTATTTA
7597939 TTATTTTTA-TATTT-
1 TTATTTTTATTATTTA
7597953 TTATTT
1 TTATTT
7597959 AAGCTAAGCA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
14 7 0.21
15 11 0.33
16 6 0.18
17 9 0.27
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.75
Consensus pattern (16 bp):
TTATTTTTATTATTTA
Found at i:7597951 original size:8 final size:8
Alignment explanation
Indices: 7597914--7597956 Score: 52
Period size: 9 Copynumber: 5.1 Consensus size: 8
7597904 TCGTTATTGT
7597914 TATTATTTA
1 TATT-TTTA
7597923 TATATTTT-
1 TAT-TTTTA
7597931 TATTTTTA
1 TATTTTTA
7597939 TTATTTTTA
1 -TATTTTTA
7597948 TATTTTTA
1 TATTTTTA
7597956 T
1 T
7597957 TTAAGCTAAG
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
7 4 0.13
8 12 0.39
9 14 0.45
10 1 0.03
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (8 bp):
TATTTTTA
Found at i:7597958 original size:23 final size:23
Alignment explanation
Indices: 7597907--7597958 Score: 86
Period size: 23 Copynumber: 2.3 Consensus size: 23
7597897 CTTATTATCG
*
7597907 TTATTGTTATTATTTATATATTT
1 TTATTTTTATTATTTATATATTT
*
7597930 TTATTTTTATTATTTTTATATTT
1 TTATTTTTATTATTTATATATTT
7597953 TTATTT
1 TTATTT
7597959 AAGCTAAGCA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.75
Consensus pattern (23 bp):
TTATTTTTATTATTTATATATTT
Done.