Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21614486
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 1093914 characters in sequence are not A, C, G, or T
File 17 of 54
Found at i:7599040 original size:24 final size:24
Alignment explanation
Indices: 7599013--7599074 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 24
7599003 TATGACATGG
**
7599013 CAAAAGAATTTT-AAAATTTTTTTT
1 CAAAA-AATTTTGAAAATTACTTTT
*
7599037 CAAAAAAGTTTTGGAAATTACTTTT
1 CAAAAAA-TTTTGAAAATTACTTTT
7599062 CAAAAAATTTTGA
1 CAAAAAATTTTGA
7599075 TTTTTTTTGT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
23 2 0.06
24 14 0.44
25 16 0.50
ACGTcount: A:0.44, C:0.06, G:0.08, T:0.42
Consensus pattern (24 bp):
CAAAAAATTTTGAAAATTACTTTT
Found at i:7601869 original size:10 final size:10
Alignment explanation
Indices: 7601854--7601880 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
7601844 CTCTTTACTC
7601854 TCCTTCATTT
1 TCCTTCATTT
7601864 TCCTTCATTT
1 TCCTTCATTT
7601874 TCCTTCA
1 TCCTTCA
7601881 CTTATTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.11, C:0.33, G:0.00, T:0.56
Consensus pattern (10 bp):
TCCTTCATTT
Found at i:7608400 original size:22 final size:22
Alignment explanation
Indices: 7608375--7608445 Score: 69
Period size: 22 Copynumber: 3.3 Consensus size: 22
7608365 TATTAGATTG
7608375 TTAGTCAATAATTTCAGTTGTA
1 TTAGTCAATAATTTCAGTTGTA
* *
7608397 TTAGTCTTATCCTATTT--GTTG--
1 TTAGTC-AAT--AATTTCAGTTGTA
7608418 TTAGTCAATAATTTCAGTTGTA
1 TTAGTCAATAATTTCAGTTGTA
7608440 TTAGTC
1 TTAGTC
7608446 TTATCCTATT
Statistics
Matches: 38, Mismatches: 4, Indels: 14
0.68 0.07 0.25
Matches are distributed among these distances:
18 4 0.11
20 6 0.16
21 6 0.16
22 12 0.32
23 6 0.16
25 4 0.11
ACGTcount: A:0.25, C:0.11, G:0.14, T:0.49
Consensus pattern (22 bp):
TTAGTCAATAATTTCAGTTGTA
Found at i:7608430 original size:43 final size:43
Alignment explanation
Indices: 7608372--7608459 Score: 176
Period size: 43 Copynumber: 2.0 Consensus size: 43
7608362 GTTTATTAGA
7608372 TTGTTAGTCAATAATTTCAGTTGTATTAGTCTTATCCTATTTG
1 TTGTTAGTCAATAATTTCAGTTGTATTAGTCTTATCCTATTTG
7608415 TTGTTAGTCAATAATTTCAGTTGTATTAGTCTTATCCTATTTG
1 TTGTTAGTCAATAATTTCAGTTGTATTAGTCTTATCCTATTTG
7608458 TT
1 TT
7608460 TTATAGATAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.23, C:0.11, G:0.14, T:0.52
Consensus pattern (43 bp):
TTGTTAGTCAATAATTTCAGTTGTATTAGTCTTATCCTATTTG
Found at i:7611479 original size:34 final size:34
Alignment explanation
Indices: 7611388--7611485 Score: 133
Period size: 34 Copynumber: 2.9 Consensus size: 34
7611378 GAAAGAAGGA
* *
7611388 AGCTTTGGCATGTAATATATAGTGTTGAAGCTTT
1 AGCTTTGGCATGTAACATATGGTGTTGAAGCTTT
* *
7611422 AACCTTGGCATGTAACATATGGTGTTGAAGCTTT
1 AGCTTTGGCATGTAACATATGGTGTTGAAGCTTT
* * *
7611456 GGCTTTGGCATGTAACATCTGGTGCTGAAG
1 AGCTTTGGCATGTAACATATGGTGTTGAAG
7611486 TTTTTGTATT
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
34 55 1.00
ACGTcount: A:0.24, C:0.13, G:0.27, T:0.36
Consensus pattern (34 bp):
AGCTTTGGCATGTAACATATGGTGTTGAAGCTTT
Found at i:7614013 original size:17 final size:16
Alignment explanation
Indices: 7613991--7614022 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
7613981 GATTATTCTT
7613991 ATCATTATTATTATTTA
1 ATCATTATT-TTATTTA
7614008 ATCATTATTTTATTT
1 ATCATTATTTTATTT
7614023 TTTATTATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.62
Consensus pattern (16 bp):
ATCATTATTTTATTTA
Found at i:7616230 original size:37 final size:37
Alignment explanation
Indices: 7616188--7616570 Score: 398
Period size: 37 Copynumber: 10.3 Consensus size: 37
7616178 TAAGGCAATT
7616188 AAACTTTAAAAATGAACTCCTCAAAATTGAGGCAACG
1 AAACTTTAAAAATGAACTCCTCAAAATTGAGGCAACG
* * ** **
7616225 AAACTTGAAAAATGAACTCCCCAAAGCTGAGGCCGCG
1 AAACTTTAAAAATGAACTCCTCAAAATTGAGGCAACG
* * * * *
7616262 AGACTCTAAAAATAAACTCCTCAAAGTTGAGACAACG
1 AAACTTTAAAAATGAACTCCTCAAAATTGAGGCAACG
* *
7616299 AAACTTGAAAAATGAACTCCTC-AAATCTAAGGCAACG
1 AAACTTTAAAAATGAACTCCTCAAAAT-TGAGGCAACG
* **
7616336 AAACTTGAAAAATGAACTCCTCAAAGCTGAGGCAACG
1 AAACTTTAAAAATGAACTCCTCAAAATTGAGGCAACG
* *
7616373 AAACTTTTAAAAAATAAACTCCTCAAAATTGAGGCAATG
1 AAAC-TTT-AAAAATGAACTCCTCAAAATTGAGGCAACG
**
7616412 AAACTTTAAAAATGAACTCCTCAAAGCTGAGGCAAC-
1 AAACTTTAAAAATGAACTCCTCAAAATTGAGGCAACG
* **
7616448 AAATCTTGAAAAATGAACTCCTCAAAGCTGAGGCAACG
1 AAA-CTTTAAAAATGAACTCCTCAAAATTGAGGCAACG
* * *
7616486 AAACTTAAAAAAT-AGACTCCTTAAAATTGAGGCAATG
1 AAACTTTAAAAATGA-ACTCCTCAAAATTGAGGCAACG
* * * *
7616523 AAAC-TTAGAAATAAATTTCTCAAAGA-TGAGGCAACG
1 AAACTTTAAAAATGAACTCCTCAAA-ATTGAGGCAACG
*
7616559 AAACTTAAAAAA
1 AAACTTTAAAAA
7616571 AATGAATTTC
Statistics
Matches: 288, Mismatches: 48, Indels: 20
0.81 0.13 0.06
Matches are distributed among these distances:
36 33 0.11
37 215 0.75
38 10 0.03
39 30 0.10
ACGTcount: A:0.46, C:0.19, G:0.15, T:0.20
Consensus pattern (37 bp):
AAACTTTAAAAATGAACTCCTCAAAATTGAGGCAACG
Found at i:7616528 original size:187 final size:186
Alignment explanation
Indices: 7616188--7616573 Score: 496
Period size: 187 Copynumber: 2.1 Consensus size: 186
7616178 TAAGGCAATT
*
7616188 AAAC-TTT-AAAAATGAACTCCTCAAAATTGAGGCAACGAAACTTGAAAAATGAACTCCCCAAAG
1 AAACTTTTAAAAAATAAACTCCTCAAAATTGAGGCAACGAAACTTGAAAAATGAACTCCCCAAAG
** * * *
7616251 CTGAGGCCGCGAGACTCTAAAAATAAACTCCTCAAAGTTGAGACAACGAAACTTGAAAAATGAAC
66 CTGAGGCAACGAAACTCTAAAAATAAACTCCTCAAAGCTGAGACAACGAAACTTAAAAAATGAAC
* * *
7616316 TCCTCAAATCTAAGGCAACGAAACTTGAAAAATGAACTCCTCAAAGCTGAGGCAACG
131 TCCTAAAATCTAAGGCAACGAAACTT-AAAAATAAACTCCTCAAAGATGAGGCAACG
* * *
7616373 AAACTTTTAAAAAATAAACTCCTCAAAATTGAGGCAATGAAACTTTAAAAATGAACTCCTCAAAG
1 AAACTTTTAAAAAATAAACTCCTCAAAATTGAGGCAACGAAACTTGAAAAATGAACTCCCCAAAG
* *
7616438 CTGAGGCAAC-AAA-TCTTGAAAAATGAACTCCTCAAAGCTGAGGCAACGAAACTTAAAAAAT-A
66 CTGAGGCAACGAAACTC-T-AAAAATAAACTCCTCAAAGCTGAGACAACGAAACTTAAAAAATGA
* * * * *
7616500 GACTCCTTAAAAT-TGAGGCAATGAAACTTAGAAATAAATTTCTCAAAGATGAGGCAACG
129 -ACTCC-TAAAATCTAAGGCAACGAAACTTAAAAATAAACTCCTCAAAGATGAGGCAACG
**
7616559 AAACTTAAAAAAAAT
1 AAACTTTTAAAAAAT
7616574 GAATTTCTCA
Statistics
Matches: 174, Mismatches: 21, Indels: 11
0.84 0.10 0.05
Matches are distributed among these distances:
185 6 0.03
186 45 0.26
187 118 0.68
188 5 0.03
ACGTcount: A:0.46, C:0.19, G:0.15, T:0.20
Consensus pattern (186 bp):
AAACTTTTAAAAAATAAACTCCTCAAAATTGAGGCAACGAAACTTGAAAAATGAACTCCCCAAAG
CTGAGGCAACGAAACTCTAAAAATAAACTCCTCAAAGCTGAGACAACGAAACTTAAAAAATGAAC
TCCTAAAATCTAAGGCAACGAAACTTAAAAATAAACTCCTCAAAGATGAGGCAACG
Found at i:7616571 original size:74 final size:74
Alignment explanation
Indices: 7616188--7616570 Score: 450
Period size: 74 Copynumber: 5.2 Consensus size: 74
7616178 TAAGGCAATT
* * *
7616188 AAACTTTAAAAATGAACTCCTCAAAATTGAGGCAACGAAACTTGAAAAATGAACTCCCCAAAGCT
1 AAACTTAAAAAATGAACTCCTCAAAGTTGAGGCAACGAAACTTGAAAAATGAACTCCTCAAAGCT
**
7616253 GAGGCCGCG
66 GAGGCAACG
* * * *
7616262 AGACTCT-AAAAATAAACTCCTCAAAGTTGAGACAACGAAACTTGAAAAATGAACTCCTCAAATC
1 AAACT-TAAAAAATGAACTCCTCAAAGTTGAGGCAACGAAACTTGAAAAATGAACTCCTCAAAGC
*
7616326 TAAGGCAACG
65 TGAGGCAACG
* * * * *
7616336 AAACTTGAAAAATGAACTCCTCAAAGCTGAGGCAACGAAACTTTTAAAAAATAAACTCCTCAAAA
1 AAACTTAAAAAATGAACTCCTCAAAGTTGAGGCAACGAAAC--TTGAAAAATGAACTCCTCAAAG
* *
7616401 TTGAGGCAATG
64 CTGAGGCAACG
* *
7616412 AAACTTTAAAAATGAACTCCTCAAAGCTGAGGCAAC-AAATCTTGAAAAATGAACTCCTCAAAGC
1 AAACTTAAAAAATGAACTCCTCAAAGTTGAGGCAACGAAA-CTTGAAAAATGAACTCCTCAAAGC
7616476 TGAGGCAACG
65 TGAGGCAACG
* * * * * * * *
7616486 AAACTTAAAAAAT-AGACTCCTTAAAATTGAGGCAATGAAACTT-AGAAATAAATTTCTCAAAGA
1 AAACTTAAAAAATGA-ACTCCTCAAAGTTGAGGCAACGAAACTTGAAAAATGAACTCCTCAAAGC
7616549 TGAGGCAACG
65 TGAGGCAACG
7616559 AAACTTAAAAAA
1 AAACTTAAAAAA
7616571 AATGAATTTC
Statistics
Matches: 267, Mismatches: 35, Indels: 15
0.84 0.11 0.05
Matches are distributed among these distances:
73 39 0.15
74 158 0.59
75 7 0.03
76 63 0.24
ACGTcount: A:0.46, C:0.19, G:0.15, T:0.20
Consensus pattern (74 bp):
AAACTTAAAAAATGAACTCCTCAAAGTTGAGGCAACGAAACTTGAAAAATGAACTCCTCAAAGCT
GAGGCAACG
Found at i:7628360 original size:27 final size:27
Alignment explanation
Indices: 7628322--7628378 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
7628312 CTAATACGAG
7628322 CGAAAGTTTTTTATTAAAGATGTTTCT
1 CGAAAGTTTTTTATTAAAGATGTTTCT
7628349 CGAAAGTTTTTTATTAAAGATGTTTCT
1 CGAAAGTTTTTTATTAAAGATGTTTCT
7628376 CGA
1 CGA
7628379 GCCCTCCCAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.30, C:0.09, G:0.16, T:0.46
Consensus pattern (27 bp):
CGAAAGTTTTTTATTAAAGATGTTTCT
Found at i:7628577 original size:17 final size:16
Alignment explanation
Indices: 7628555--7628586 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
7628545 AACTATTCTT
7628555 ATCATTATTATTATTTA
1 ATCATTATT-TTATTTA
7628572 ATCATTATTTTATTT
1 ATCATTATTTTATTT
7628587 TTTATTATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.62
Consensus pattern (16 bp):
ATCATTATTTTATTTA
Found at i:7628746 original size:89 final size:88
Alignment explanation
Indices: 7628648--7628827 Score: 297
Period size: 89 Copynumber: 2.0 Consensus size: 88
7628638 TCTAGGTTTT
* *
7628648 TTCCTTTGATATTTCCTATCTTATTTCTTTTATATAATGTTTATTAATCAATACCTTGTACCACT
1 TTCC-TTGATATTTCCTATCTTATTACTTTTATATAATATTTATTAATCAATACCTTGTACCACT
7628713 AGATACTTAATGCATAATTATTTA
65 AGATACTTAATGCATAATTATTTA
* * *
7628737 TNTCCTTGATATTTCTTGTCTTATTACTTTTATATAATATTTATTAATCTATACCTTGTACCACT
1 T-TCCTTGATATTTCCTATCTTATTACTTTTATATAATATTTATTAATCAATACCTTGTACCACT
7628802 AGATACTTAATGCATAATTATTTA
65 AGATACTTAATGCATAATTATTTA
7628826 TT
1 TT
7628828 GTCTTGGATT
Statistics
Matches: 85, Mismatches: 5, Indels: 3
0.91 0.05 0.03
Matches are distributed among these distances:
88 1 0.01
89 81 0.95
90 3 0.04
ACGTcount: A:0.29, C:0.15, G:0.06, T:0.50
Consensus pattern (88 bp):
TTCCTTGATATTTCCTATCTTATTACTTTTATATAATATTTATTAATCAATACCTTGTACCACTA
GATACTTAATGCATAATTATTTA
Found at i:7628858 original size:89 final size:89
Alignment explanation
Indices: 7628674--7628855 Score: 262
Period size: 89 Copynumber: 2.1 Consensus size: 89
7628664 TATCTTATTT
* *
7628674 CTTTTATATAATGTTTATTAATCAATACCTTGTACCACTAGATACTTAATGCATAATTATTTATN
1 CTTTTATATAATATTTATTAATCAATACCTTGTACCACTAGATACTTAATGCATAATTATTTATA
* *
7628739 TCCTTGATATTTCTTGTCTTATTA
66 TCCTTGATATTTCTTGTATTAATA
*
7628763 CTTTTATATAATATTTATTAATCTATACCTTGTACCACTAGATACTTAATGCATAATTATTTAT-
1 CTTTTATATAATATTTATTAATCAATACCTTGTACCACTAGATACTTAATGCATAATTATTTATA
*
7628827 TGTCTTGGAT-TTTCTT-TATTAATA
66 T-CCTT-GATATTTCTTGTATTAATA
*
7628851 GTTTT
1 CTTTT
7628856 TATTATCTGT
Statistics
Matches: 85, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
88 11 0.13
89 71 0.84
90 3 0.04
ACGTcount: A:0.29, C:0.13, G:0.07, T:0.50
Consensus pattern (89 bp):
CTTTTATATAATATTTATTAATCAATACCTTGTACCACTAGATACTTAATGCATAATTATTTATA
TCCTTGATATTTCTTGTATTAATA
Found at i:7629683 original size:18 final size:18
Alignment explanation
Indices: 7629646--7629708 Score: 65
Period size: 18 Copynumber: 3.4 Consensus size: 18
7629636 ATACTCTTAT
*
7629646 ATTTTTTTATC-TAATCTC
1 ATTTTTTTATCATCAT-TC
7629664 ATTTTTTTATCATCATTC
1 ATTTTTTTATCATCATTC
** *
7629682 ATTCATTCATTCATCATTC
1 ATTTTTTTA-TCATCATTC
7629701 ATTTTTTT
1 ATTTTTTT
7629709 TTGTATCATT
Statistics
Matches: 36, Mismatches: 7, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
18 19 0.53
19 17 0.47
ACGTcount: A:0.22, C:0.17, G:0.00, T:0.60
Consensus pattern (18 bp):
ATTTTTTTATCATCATTC
Found at i:7639105 original size:14 final size:14
Alignment explanation
Indices: 7639086--7639117 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
7639076 AGTACATTTC
*
7639086 TTTTAATTATAAAA
1 TTTTAATAATAAAA
7639100 TTTTAATAATAAAA
1 TTTTAATAATAAAA
7639114 TTTT
1 TTTT
7639118 CTTCCCTTCC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (14 bp):
TTTTAATAATAAAA
Found at i:7640152 original size:176 final size:173
Alignment explanation
Indices: 7639806--7641497 Score: 1882
Period size: 176 Copynumber: 9.6 Consensus size: 173
7639796 ACGATGCCCA
* * * * * * * * *
7639806 AAGATTTAAAATCTACAAAAACATTTGATAAAGAAAGTCTTGAAAGGAATATAAGCATTTTATAT
1 AAGACTTAAAATCCACATAAATATCTGATAAAGAAAGTCTTGAAAGGAATATAAGCGTTATAGAC
* * * ** * *
7639871 TTAGTAGG-CTTTCAATCGCGTGGGATACTTTTGACTATGAGGGAAAAAATGTAATTTTCATACC
66 TTAGTAGGTC-TCCAACCGTGTGCAATACTTTTGACTATGA-GG-ACAAATGTAATTTTCGTACC
* * *
7639935 TTTATATACACGGTAAGTAACTTCCATAAAGAGGTTCAAATACTAGT
128 TTTATATACA-TGTAAGTAACTTCCATAAAGGGGCTCAAATACTAGT
* * * *
7639982 AAGATTTAAAATCCACATAAATATGTGATAAAGAAAGTCTTTG-AAGGAATATAAGCATTATACA
1 AAGACTTAAAATCCACATAAATATCTGATAAAGAAAGTC-TTGAAAGGAATATAAGCGTTATAGA
* * * *
7640046 CTTAGTAGGTCTCCAACCATGTGCAATACTTTGGACTATGAAGGACAAATGTAATTTTTGTACAT
65 CTTAGTAGGTCTCCAACCGTGTGCAATACTTTTGACTATG-AGGACAAATGTAATTTTCGTACCT
7640111 TTATATACATGGTGAA-TAACTTCCATGAAAGGGGCTCAAATACTAGT
129 TTATATACAT-GT-AAGTAACTTCCAT-AAAGGGGCTCAAATACTAGT
* * *
7640158 AAGACTTAAAATCTACATAAATATCTGATAAAGAAAGTCTTGAAAGGAATATAAACATTATAGAC
1 AAGACTTAAAATCCACATAAATATCTGATAAAGAAAGTCTTGAAAGGAATATAAGCGTTATAGAC
* * **** * * *
7640223 TTTGTAGGCCTCCAATTAAGTGCAATACTTTTGACTATGGGAGACAAATGTAATTTTCATATCTT
66 TTAGTAGGTCTCCAACCGTGTGCAATACTTTTGACTATGAG-GACAAATGTAATTTTCGTACCTT
* * *
7640288 TATATACAATGTAAATAATTTTCATAAAAGGGGGCTCAAATACTAGT
130 TATATAC-ATGTAAGTAACTTCCAT-AAA-GGGGCTCAAATACTAGT
* * * * * * * *
7640335 AAGACCTAAGATCCACATAAATATTTGATAAAAAAAGTCTTGGAAGGAGTATAAAACGTTATGGA
1 AAGACTTAAAATCCACATAAATATCTGATAAAGAAAGTCTTGAAAGGAATAT-AAGCGTTATAGA
* *
7640400 CTTAGTAGGTCTCCAACCGTGTGCAATACTTTAGACTATGAGGAAAAATGTAATTTTCGTACCTT
65 CTTAGTAGGTCTCCAACCGTGTGCAATACTTTTGACTATGAGGACAAATGTAATTTTCGTACCTT
*
7640465 TATATACACGATAAGTAACTTCCATAAAGGGGACTCAAATACTAGT
130 TATATACATG-TAAGTAACTTCCATAAAGGGG-CTCAAATACTAGT
* * *
7640511 AAGACTTAAAATCCACATAAATATCTAATAAAGAAAGTCTTGAAAGGAATGTAAGCGTTATAGGC
1 AAGACTTAAAATCCACATAAATATCTGATAAAGAAAGTCTTGAAAGGAATATAAGCGTTATAGAC
* * * **
7640576 TTTGTAGGTCTCCAATCGTGTGCAATAATTTTGACTATGAGGGACAAATGTAATTTTCACACCTT
66 TTAGTAGGTCTCCAACCGTGTGCAATACTTTTGACTATGA-GGACAAATGTAATTTTCGTACCTT
* * * * * *
7640641 TACATACAATGTAAGTAATTTTCTTAAAAGGGACCCAAATACTAGT
130 TATATAC-ATGTAAGTAACTTCCAT-AAAGGGGCTCAAATACTAGT
* * * ** * *
7640687 AAGACTTAAGATCCACATAAATATTTGATAAAGAAAGTCTTGAAAGGAGTATAAATGTTGTGGAC
1 AAGACTTAAAATCCACATAAATATCTGATAAAGAAAGTCTTGAAAGGAATATAAGCGTTATAGAC
* * *
7640752 TTAGTAGGTCTCCAACCGTGTGCAATACTTTAGACTATGAGGAAAAATGTAATTTTCGTATCTTT
66 TTAGTAGGTCTCCAACCGTGTGCAATACTTTTGACTATGAGGACAAATGTAATTTTCGTACCTTT
* * *
7640817 ATATGCACGATAAGTAACTTCCATAATGGGGACTCAAATACTAGT
131 ATATACATG-TAAGTAACTTCCATAAAGGGG-CTCAAATACTAGT
* *
7640862 AAGACTTAAAATCCACATAAATATCTAAAAAAGAAAGTCTTGAAAGGAATATAAGCGTTATAGAC
1 AAGACTTAAAATCCACATAAATATCTGATAAAGAAAGTCTTGAAAGGAATATAAGCGTTATAGAC
* ** * * * *
7640927 TTAAT-GAGTCTCCAATTGAGTGCAATAATTTTGACTATGAGAGACAAATGTAATTTTCATACTT
66 TTAGTAG-GTCTCCAACCGTGTGCAATACTTTTGACTATGAG-GACAAATGTAATTTTCGTACCT
* * *
7640991 TTATATACAATGTAAGTAATTTTCATAAAGGGGGTTCAAATACTAGT
129 TTATATAC-ATGTAAGTAACTTCCATAAA-GGGGCTCAAATACTAGT
* * * * * *
7641038 AAGACCTAAGATCCACATAAATATTTGATAAAAAAAGTCTTGAAAGGAGTATAAGCGTTATTGAC
1 AAGACTTAAAATCCACATAAATATCTGATAAAGAAAGTCTTGAAAGGAATATAAGCGTTATAGAC
* * * * * * *
7641103 TTAATAGGTCTCCAACCATGGGCAATACTTTGGACTACGAGGAAAAAATGTAATTTGCGTACCTT
66 TTAGTAGGTCTCCAACCGTGTGCAATACTTTTGACTATGAGG-ACAAATGTAATTTTCGTACCTT
* * *
7641168 TATGTACATAGTAAGTAACTTCCATAGAAGGGGTTCAAATAGTAGT
130 TATATACAT-GTAAGTAACTTCCATA-AAGGGGCTCAAATACTAGT
* * * *
7641214 AAGACTTAAAATCCACATAAATATCTAATAAAGAAAGTCTTCAGAGGAATATAAGCGTTATAGAG
1 AAGACTTAAAATCCACATAAATATCTGATAAAGAAAGTCTTGAAAGGAATATAAGCGTTATAGAC
* * * * *
7641279 TTAGTGGGTCTCCAATCGTGTGCAATAATTTTGACTATGAGGGACAAATGTAATTTTTGTATCTT
66 TTAGTAGGTCTCCAACCGTGTGCAATACTTTTGACTATGA-GGACAAATGTAATTTTCGTACCTT
* *
7641344 TATATACAATGTAAGTAATTTTCATAAAGAGGGCTCAAATACTAGT
130 TATATAC-ATGTAAGTAACTTCCATAAAG-GGGCTCAAATACTAGT
* * * * * **
7641390 ACGACTTAAAATACACATAAATATATAATAATA-AAAATCTTTGAAAGGAATGCAAGCGTTATAG
1 AAGACTTAAAATCCACATAAATATCTGATAA-AGAAAGTC-TTGAAAGGAATATAAGCGTTATAG
* * * *
7641454 ACTTAGTAGATCTCGAACCGTGTGCAATACTTTGGACTGTGAGG
64 ACTTAGTAGGTCTCCAACCGTGTGCAATACTTTTGACTATGAGG
7641498 GAATGATAAA
Statistics
Matches: 1276, Mismatches: 208, Indels: 64
0.82 0.13 0.04
Matches are distributed among these distances:
174 8 0.01
175 237 0.19
176 804 0.63
177 183 0.14
178 44 0.03
ACGTcount: A:0.39, C:0.13, G:0.17, T:0.31
Consensus pattern (173 bp):
AAGACTTAAAATCCACATAAATATCTGATAAAGAAAGTCTTGAAAGGAATATAAGCGTTATAGAC
TTAGTAGGTCTCCAACCGTGTGCAATACTTTTGACTATGAGGACAAATGTAATTTTCGTACCTTT
ATATACATGTAAGTAACTTCCATAAAGGGGCTCAAATACTAGT
Found at i:7641327 original size:352 final size:351
Alignment explanation
Indices: 7639806--7641497 Score: 2193
Period size: 351 Copynumber: 4.8 Consensus size: 351
7639796 ACGATGCCCA
* * * * * * * * * *
7639806 AAGATTTAAAATCTACAAAAACATTTGATAAAGAAAGTCTTGAAAGGAATATAAGCATTTTATAT
1 AAGACTTAAAATCCACATAAATATCTAATAAAGAAAGTCTTGAAAGGAATATAAGCGTTATAGAC
* * ** * * *
7639871 TTAGTAGG-CTTTCAATCGCGTGGGATACTTTTGACTATGAGGGAAAAAATGTAATTTTCATACC
66 TTAGTAGGTC-TCCAATCGAGTGCAATAATTTTGACTATGAGGG-ACAAATGTAATTTTCATACT
** * * * * * *
7639935 TTTATATACACGGTAAGTAACTTCCATAAA-GAGGTTCAAATACTAGTAAGATTTAAAATCCACA
129 TTTATATACAATGTAAGTAATTTTCATAAAGGGGGCTCAAATACTAGTAAGACTTAAGATCCACA
* * * * *
7639999 TAAATATGTGATAAAGAAAGTCTTTG-AAGGAATATAAGCATTATACACTTAGTAGGTCTCCAAC
194 TAAATATTTGATAAAAAAAGTC-TTGAAAGGAGTATAAGCGTTATAGACTTAGTAGGTCTCCAAC
* * * * * *
7640063 CATGTGCAATACTTTGGACTATGAAGGACAAATGTAATTTTTGTACATTTATATACATGGTGAA-
258 CGTGTGCAATACTTTGGACTATG-AGGAAAAATGTAATTTTCGTACCTTTATATACACGAT-AAG
7640127 TAACTTCCATGAAAGGGG-CTCAAATACTAGT
321 TAACTTCCAT-AAAGGGGACTCAAATACTAGT
* * * *
7640158 AAGACTTAAAATCTACATAAATATCTGATAAAGAAAGTCTTGAAAGGAATATAAACATTATAGAC
1 AAGACTTAAAATCCACATAAATATCTAATAAAGAAAGTCTTGAAAGGAATATAAGCGTTATAGAC
* * ** *
7640223 TTTGTAGGCCTCCAATTAAGTGCAATACTTTTGACTATG-GGAGACAAATGTAATTTTCATA-TC
66 TTAGTAGGTCTCCAATCGAGTGCAATAATTTTGACTATGAGG-GACAAATGTAATTTTCATACT-
* *
7640286 TTTATATACAATGTAAATAATTTTCATAAAAGGGGGCTCAAATACTAGTAAGACCTAAGATCCAC
129 TTTATATACAATGTAAGTAATTTTCAT-AAAGGGGGCTCAAATACTAGTAAGACTTAAGATCCAC
* * *
7640351 ATAAATATTTGATAAAAAAAGTCTTGGAAGGAGTATAAAACGTTATGGACTTAGTAGGTCTCCAA
193 ATAAATATTTGATAAAAAAAGTCTTGAAAGGAGTAT-AAGCGTTATAGACTTAGTAGGTCTCCAA
*
7640416 CCGTGTGCAATACTTTAGACTATGAGGAAAAATGTAATTTTCGTACCTTTATATACACGATAAGT
257 CCGTGTGCAATACTTTGGACTATGAGGAAAAATGTAATTTTCGTACCTTTATATACACGATAAGT
7640481 AACTTCCATAAAGGGGACTCAAATACTAGT
322 AACTTCCATAAAGGGGACTCAAATACTAGT
* *
7640511 AAGACTTAAAATCCACATAAATATCTAATAAAGAAAGTCTTGAAAGGAATGTAAGCGTTATAGGC
1 AAGACTTAAAATCCACATAAATATCTAATAAAGAAAGTCTTGAAAGGAATATAAGCGTTATAGAC
* * * *
7640576 TTTGTAGGTCTCCAATCGTGTGCAATAATTTTGACTATGAGGGACAAATGTAATTTTCACACCTT
66 TTAGTAGGTCTCCAATCGAGTGCAATAATTTTGACTATGAGGGACAAATGTAATTTTCATACTTT
* * * * *
7640641 TACATACAATGTAAGTAATTTTCTTAAAAGGGACCCAAATACTAGTAAGACTTAAGATCCACATA
131 TATATACAATGTAAGTAATTTTCATAAAGGGGGCTCAAATACTAGTAAGACTTAAGATCCACATA
* ** * *
7640706 AATATTTGATAAAGAAAGTCTTGAAAGGAGTATAAATGTTGTGGACTTAGTAGGTCTCCAACCGT
196 AATATTTGATAAAAAAAGTCTTGAAAGGAGTATAAGCGTTATAGACTTAGTAGGTCTCCAACCGT
* * *
7640771 GTGCAATACTTTAGACTATGAGGAAAAATGTAATTTTCGTATCTTTATATGCACGATAAGTAACT
261 GTGCAATACTTTGGACTATGAGGAAAAATGTAATTTTCGTACCTTTATATACACGATAAGTAACT
*
7640836 TCCATAATGGGGACTCAAATACTAGT
326 TCCATAAAGGGGACTCAAATACTAGT
*
7640862 AAGACTTAAAATCCACATAAATATCTAAAAAAGAAAGTCTTGAAAGGAATATAAGCGTTATAGAC
1 AAGACTTAAAATCCACATAAATATCTAATAAAGAAAGTCTTGAAAGGAATATAAGCGTTATAGAC
* * *
7640927 TTAAT-GAGTCTCCAATTGAGTGCAATAATTTTGACTATGAGAGACAAATGTAATTTTCATACTT
66 TTAGTAG-GTCTCCAATCGAGTGCAATAATTTTGACTATGAGGGACAAATGTAATTTTCATACTT
* *
7640991 TTATATACAATGTAAGTAATTTTCATAAAGGGGGTTCAAATACTAGTAAGACCTAAGATCCACAT
130 TTATATACAATGTAAGTAATTTTCATAAAGGGGGCTCAAATACTAGTAAGACTTAAGATCCACAT
* * *
7641056 AAATATTTGATAAAAAAAGTCTTGAAAGGAGTATAAGCGTTATTGACTTAATAGGTCTCCAACCA
195 AAATATTTGATAAAAAAAGTCTTGAAAGGAGTATAAGCGTTATAGACTTAGTAGGTCTCCAACCG
* * * * *
7641121 TGGGCAATACTTTGGACTACGAGGAAAAAATGTAATTTGCGTACCTTTATGTACA-TAGTAAGTA
260 TGTGCAATACTTTGGACTATGAGG-AAAAATGTAATTTTCGTACCTTTATATACACGA-TAAGTA
* *
7641185 ACTTCCATAGAAGGGG-TTCAAATAGTAGT
323 ACTTCCATA-AAGGGGACTCAAATACTAGT
* * *
7641214 AAGACTTAAAATCCACATAAATATCTAATAAAGAAAGTCTTCAGAGGAATATAAGCGTTATAGAG
1 AAGACTTAAAATCCACATAAATATCTAATAAAGAAAGTCTTGAAAGGAATATAAGCGTTATAGAC
* * **
7641279 TTAGTGGGTCTCCAATCGTGTGCAATAATTTTGACTATGAGGGACAAATGTAATTTTTGTA-TCT
66 TTAGTAGGTCTCCAATCGAGTGCAATAATTTTGACTATGAGGGACAAATGTAATTTTCATACT-T
* * * *
7641343 TTATATACAATGTAAGTAATTTTCATAAAGAGGGCTCAAATACTAGTACGACTTAAAATACACAT
130 TTATATACAATGTAAGTAATTTTCATAAAGGGGGCTCAAATACTAGTAAGACTTAAGATCCACAT
* * * ** * *
7641408 AAATATATAATAATAAAAA-TCTTTGAAAGGAATGCAAGCGTTATAGACTTAGTAGATCTCGAAC
195 AAATATTTGATAA-AAAAAGTC-TTGAAAGGAGTATAAGCGTTATAGACTTAGTAGGTCTCCAAC
*
7641472 CGTGTGCAATACTTTGGACTGTGAGG
258 CGTGTGCAATACTTTGGACTATGAGG
7641498 GAATGATAAA
Statistics
Matches: 1189, Mismatches: 132, Indels: 37
0.88 0.10 0.03
Matches are distributed among these distances:
350 1 0.00
351 415 0.35
352 409 0.34
353 316 0.27
354 48 0.04
ACGTcount: A:0.39, C:0.13, G:0.17, T:0.31
Consensus pattern (351 bp):
AAGACTTAAAATCCACATAAATATCTAATAAAGAAAGTCTTGAAAGGAATATAAGCGTTATAGAC
TTAGTAGGTCTCCAATCGAGTGCAATAATTTTGACTATGAGGGACAAATGTAATTTTCATACTTT
TATATACAATGTAAGTAATTTTCATAAAGGGGGCTCAAATACTAGTAAGACTTAAGATCCACATA
AATATTTGATAAAAAAAGTCTTGAAAGGAGTATAAGCGTTATAGACTTAGTAGGTCTCCAACCGT
GTGCAATACTTTGGACTATGAGGAAAAATGTAATTTTCGTACCTTTATATACACGATAAGTAACT
TCCATAAAGGGGACTCAAATACTAGT
Found at i:7642028 original size:111 final size:110
Alignment explanation
Indices: 7641862--7642111 Score: 413
Period size: 111 Copynumber: 2.3 Consensus size: 110
7641852 GGAAATTGGC
* * *
7641862 AATGAAGAGGAAAAATATGTAAGATTC-T-T-A---AATTACTTTATCAGCCCATTGCCCACTCT
1 AATGAAGAGGAAAAAAATGCAAGATTCTTGTAAGTTAATTACTTCATCAGCCCATTGCCCACTCT
7641921 TGTACCGAAGAGAAACTTTATTTTTGTTAGTCTTTGGTCTTTGTA
66 TGTACCGAAGAGAAACTTTATTTTTGTTAGTCTTTGGTCTTTGTA
*
7641966 AATGAAGAGGAAAAAAATGCAAGATTCTTGTAAGNTTAATTACTTCATCAGCTCATTGCCCACTC
1 AATGAAGAGGAAAAAAATGCAAGATTCTTGTAAG-TTAATTACTTCATCAGCCCATTGCCCACTC
7642031 TTGTACCGAAGAGAAACTTTATTTTTGTTAGTCTTTGGTCTTTGTA
65 TTGTACCGAAGAGAAACTTTATTTTTGTTAGTCTTTGGTCTTTGTA
7642077 AATGAAGAGGAAAAAAATGCAAGATTCTTGTAAGT
1 AATGAAGAGGAAAAAAATGCAAGATTCTTGTAAGT
7642112 ATTAATTCTT
Statistics
Matches: 135, Mismatches: 4, Indels: 8
0.92 0.03 0.05
Matches are distributed among these distances:
104 25 0.19
105 1 0.01
106 1 0.01
107 1 0.01
110 1 0.01
111 106 0.79
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35
Consensus pattern (110 bp):
AATGAAGAGGAAAAAAATGCAAGATTCTTGTAAGTTAATTACTTCATCAGCCCATTGCCCACTCT
TGTACCGAAGAGAAACTTTATTTTTGTTAGTCTTTGGTCTTTGTA
Found at i:7643403 original size:14 final size:14
Alignment explanation
Indices: 7643384--7643414 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
7643374 GATGTATGTC
*
7643384 TTTAATTATAAAAT
1 TTTAATGATAAAAT
7643398 TTTAATGATAAAAT
1 TTTAATGATAAAAT
7643412 TTT
1 TTT
7643415 CCTGCCCTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (14 bp):
TTTAATGATAAAAT
Found at i:7644476 original size:176 final size:176
Alignment explanation
Indices: 7644251--7644625 Score: 452
Period size: 176 Copynumber: 2.1 Consensus size: 176
7644241 TCCACAGAGA
* * *
7644251 GGCTCAAATACTAGTAAGATTTAAAATCCACCTAAATATCTAATAAAGAAAGCCTGGAAAGGAAT
1 GGCTCAAATACTAGTAAGACTTAAAATCCACATAAATATCTAATAAAGAAAGCCTGAAAAGGAAT
* * * * * * *
7644316 ATGAA-CGTTATAGATTTAGTAGG-TCTCCAATTACCTGTAATACTTTGGACTATGAGGGACAAA
66 AT-AAGCATTATAAACTTAGT-GGATCTCCAATCACCTGCAATAATTTGGACTATGAGGGAAAAA
* * *
7644379 GGTAATTTTCATACCTTTATATATAC-A-GTAAGTAACTTTCATAAAAGG
129 GGTAATTTTCATA-CTTCA-ACATACAATGCAAGTAACTTTCATAAAAGG
* * ** *
7644427 GGCTCAAATACTAGTTAGACTTAAAATCCACATCAATATCTAATAAAGAAAGTTTTAAAAGGAAT
1 GGCTCAAATACTAGTAAGACTTAAAATCCACATAAATATCTAATAAAGAAAGCCTGAAAAGGAAT
*** * *
7644492 ATAAGCATTATAAACTTAGTGGATCTCCAATCGTTTGCAATAATTTTGACTATGAGGGAAAAATG
66 ATAAGCATTATAAACTTAGTGGATCTCCAATCACCTGCAATAATTTGGACTATGAGGGAAAAAGG
*
7644557 TAATTTTCATACTTCAACATACAATGCAAGTAATTTTCATAAAAGG
131 TAATTTTCATACTTCAACATACAATGCAAGTAACTTTCATAAAAGG
**
7644603 GGCTCAAAGGCTAGTAAGACTTA
1 GGCTCAAATACTAGTAAGACTTA
7644626 TAGACTTAGT
Statistics
Matches: 168, Mismatches: 27, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
174 5 0.03
175 9 0.05
176 154 0.92
ACGTcount: A:0.40, C:0.14, G:0.16, T:0.30
Consensus pattern (176 bp):
GGCTCAAATACTAGTAAGACTTAAAATCCACATAAATATCTAATAAAGAAAGCCTGAAAAGGAAT
ATAAGCATTATAAACTTAGTGGATCTCCAATCACCTGCAATAATTTGGACTATGAGGGAAAAAGG
TAATTTTCATACTTCAACATACAATGCAAGTAACTTTCATAAAAGG
Found at i:7644712 original size:124 final size:124
Alignment explanation
Indices: 7644515--7644749 Score: 296
Period size: 124 Copynumber: 1.9 Consensus size: 124
7644505 ACTTAGTGGA
* * *
7644515 TCTCCAATCGTTTGCAATAATTTTGACTATGAGGGAAAAATGTAATTTTCATACTTCAACATACA
1 TCTCCAACCGTGTGCAATAATTTTGACTATGAGGAAAAAATGTAATTTTCATACTTCAACATACA
* * * *
7644580 ATGCAAGTAATTTTCATAAAAGGGGCTCAAAGGCTAGTAAGACTTATAGACTTAGTAAG
66 AGGCAAGTAACTTCCATAAAAGGGGCTCAAAGACTAGTAAGACTTATAGACTTAGTAAG
* * *
7644639 TCTCCAACCGTGTGGAAT-ATTTTAGACTATGAGGAAAAAATGTAATTTTCGTACCTTTATA-A-
1 TCTCCAACCGTGTGCAATAATTTT-GACTATGAGGAAAAAATGTAATTTTCATA-CTTCA-ACAT
* * * *
7644701 ACACGGTAAGTAACTTCCATAAAGGGGGCTCAAATACTAGTAAGACTTA
63 ACAAGGCAAGTAACTTCCATAAAAGGGGCTCAAAGACTAGTAAGACTTA
7644750 AAATCCACAT
Statistics
Matches: 94, Mismatches: 14, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
123 5 0.05
124 83 0.88
125 5 0.05
126 1 0.01
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.31
Consensus pattern (124 bp):
TCTCCAACCGTGTGCAATAATTTTGACTATGAGGAAAAAATGTAATTTTCATACTTCAACATACA
AGGCAAGTAACTTCCATAAAAGGGGCTCAAAGACTAGTAAGACTTATAGACTTAGTAAG
Found at i:7644865 original size:300 final size:300
Alignment explanation
Indices: 7644354--7644922 Score: 845
Period size: 300 Copynumber: 1.9 Consensus size: 300
7644344 AATTACCTGT
* * * * * *
7644354 AATACTTTGGACTATGAGGGACAAAGGTAATTTTCATACCTTTATATATACAGTAAGTAACTTTC
1 AATACTTTAGACTATGAGGAAAAAAGGTAATTTTCATACCTTTATAAACACAGTAAGTAACTTCC
* * * *
7644419 ATAAAAGGGGCTCAAATACTAGTTAGACTTAAAATCCACATCAATATCTAATAAAGAAAGTTTTA
66 ATAAAAGGGGCTCAAATACTAGTAAGACTTAAAATCCACATAAATATCTAATAAAAAAAGTCTTA
* * *
7644484 AAAGGAATATAAGCATTATAAACTTAGTGGATCTCCAATCGTTTGCAATAATTTTGACTATGAGG
131 AAAGGAATATAAGCATTATAAACTTAGTGGATCTCCAATCGTGTGCAATAACTTTGACTATGAGA
*
7644549 GAAAAATGTAATTTTCATACTTCAACATACAATGCAAGTAATTTTCATAAAAGG-GGCTCAAAGG
196 GAAAAATGTAATTTTCATACTTCAACATACAATGCAAGTAATTTTCAT-AAAGGAGGCTCAAAGA
7644613 CTAGTAAGACTTATAGACTTAGTAAGTCTCCAACCGTGTGG
260 CTAGTAAGACTTATAGACTTAGTAAGTCTCCAACCGTGTGG
* * * *
7644654 AATATTTTAGACTATGAGGAAAAAATGTAATTTTCGTACCTTTATAAACACGGTAAGTAACTTCC
1 AATACTTTAGACTATGAGGAAAAAAGGTAATTTTCATACCTTTATAAACACAGTAAGTAACTTCC
* *
7644719 ATAAAGGGGGCTCAAATACTAGTAAGACTTAAAATCCACATAAATATCTAATAAAAAAAGTCTTC
66 ATAAAAGGGGCTCAAATACTAGTAAGACTTAAAATCCACATAAATATCTAATAAAAAAAGTCTTA
* *
7644784 AAAGGAATATAAGCGTTATAGACTTAGT-GAGTCTCCAATCGTGTGCAATAACTTTGACTATGAG
131 AAAGGAATATAAGCATTATAAACTTAGTGGA-TCTCCAATCGTGTGCAATAACTTTGACTATGAG
* ** * * * *
7644848 AGACAAATGTAATTTTCATACTTTTATATACAATGTAAGTAATTTTCATAGAGGAGGCTCAAATA
195 AGAAAAATGTAATTTTCATACTTCAACATACAATGCAAGTAATTTTCATAAAGGAGGCTCAAAGA
7644913 CTAGTAAGAC
260 CTAGTAAGAC
7644923 ACAAGATCCA
Statistics
Matches: 238, Mismatches: 29, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
299 6 0.03
300 232 0.97
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.31
Consensus pattern (300 bp):
AATACTTTAGACTATGAGGAAAAAAGGTAATTTTCATACCTTTATAAACACAGTAAGTAACTTCC
ATAAAAGGGGCTCAAATACTAGTAAGACTTAAAATCCACATAAATATCTAATAAAAAAAGTCTTA
AAAGGAATATAAGCATTATAAACTTAGTGGATCTCCAATCGTGTGCAATAACTTTGACTATGAGA
GAAAAATGTAATTTTCATACTTCAACATACAATGCAAGTAATTTTCATAAAGGAGGCTCAAAGAC
TAGTAAGACTTATAGACTTAGTAAGTCTCCAACCGTGTGG
Found at i:7644909 original size:176 final size:173
Alignment explanation
Indices: 7644623--7645426 Score: 864
Period size: 176 Copynumber: 4.6 Consensus size: 173
7644613 CTAGTAAGAC
* * * *
7644623 TTATAGACTTAGTAAGTCTCCAACCGTGTGGAATATTTTAGACTATGAGGAAAAAATGTAATTTT
1 TTATAGACTTAGT-AGTCTCCAACCGTGTGCAATACTTTGGACTATGAGG-ACAAATGTAATTTT
* ** *
7644688 CGTACCTTTATAAACACGGTAAGTAACTTCCATAAAGGGGGCTCAAATACTAGTAAGACTTAAAA
64 CGTACCTTTATATACAATGTAAGTAACTTCCATAAA-GAGGCTCAAATACTAGTAAGACTTAAAA
*
7644753 TCCACATAAATATCTAATAAAAAAAGTCTTCAAAGGAATATAAGCG
128 TCCACATAAATATCTAATAAAAAAAGTCTTCAAAGGAATATAAGCA
*
7644799 TTATAGACTTAGTGAGTCTCCAATCGTGTGCAATAACTTT-GACTATGAGAGACAAATGTAATTT
1 TTATAGACTTAGT-AGTCTCCAACCGTGTGCAAT-ACTTTGGACTATGAG-GACAAATGTAATTT
* * * * * ** *
7644863 TCATACTTTTATATACAATGTAAGTAATTTTCATAGAGGAGGCTCAAATACTAGTAAGACACAAG
63 TCGTACCTTTATATACAATGTAAGTAACTTCCATA-AAGAGGCTCAAATACTAGTAAGACTTAAA
* * * * * *
7644928 ATCCAAAGAAATATTTGATAAAGAAAGTCTTGAAA-GAAGTATAAGCA
127 ATCCACATAAATATCTAATAAAAAAAGTCTTCAAAGGAA-TATAAGCA
* * * * *
7644975 CTATAGACTTAATAGGTCTCCAAGCATGTGCAATACTTTGGACTATGAGGAAAAAATGTAATTTT
1 TTATAGACTTAGTA-GTCTCCAACCGTGTGCAATACTTTGGACTATGAGG-ACAAATGTAATTTT
* * * *
7645040 CGTACCTTTATATA-GACGATAAGTAACTTCCATAAAAAGGCCTCAAATACTAGCAAGACTTAAA
64 CGTACCTTTATATACAATG-TAAGTAACTTCCATAAAGAGG-CTCAAATACTAGTAAGACTTAAA
* * *
7645104 ATCCACATAAATATCTAATAAAGAAAGTCTTCAAAAGAATATATGCA
127 ATCCACATAAATATCTAATAAAAAAAGTCTTCAAAGGAATATAAGCA
* * * ** * * * *
7645151 TTATAGAGTCAGTGGGTCTCCAATTGTGTGCAATAATTTTGACTTTGAGGGACAAATGTATTTTT
1 TTATAGACTTAGT-AGTCTCCAACCGTGTGCAATACTTTGGACTATGA-GGACAAATGTAATTTT
* * * *
7645216 TGTACCATTATATACAATGTAAGTAATTTTCATAAAGAGGGCTCAAATACTAGTAAGACTTAAAA
64 CGTACCTTTATATACAATGTAAGTAACTTCCATAAAGA-GGCTCAAATACTAGTAAGACTTAAAA
* * ** *
7645281 TCCACATAAATATATAAGAAAAATGGTCTTGAAAGGAATATATAAGCA
128 TCCACATAAATATCTAATAAAAAAAGTCTTCAAAGG-A-ATATAAGCA
* *
7645329 TTATAGACTT--T-GTCTCCAACCGTGTGCAATACTTTGGATTATGAGGGACAAATGTAATTTTT
1 TTATAGACTTAGTAGTCTCCAACCGTGTGCAATACTTTGGACTATGA-GGACAAATGTAATTTTC
* ** *
7645391 GTACATTTATATACACGGTAAATAACTTCCATAAAG
65 GTACCTTTATATACAATGTAAGTAACTTCCATAAAG
7645427 GGGGCTACAT
Statistics
Matches: 520, Mismatches: 92, Indels: 34
0.80 0.14 0.05
Matches are distributed among these distances:
174 73 0.14
175 16 0.03
176 399 0.77
177 16 0.03
178 16 0.03
ACGTcount: A:0.40, C:0.14, G:0.16, T:0.30
Consensus pattern (173 bp):
TTATAGACTTAGTAGTCTCCAACCGTGTGCAATACTTTGGACTATGAGGACAAATGTAATTTTCG
TACCTTTATATACAATGTAAGTAACTTCCATAAAGAGGCTCAAATACTAGTAAGACTTAAAATCC
ACATAAATATCTAATAAAAAAAGTCTTCAAAGGAATATAAGCA
Found at i:7645268 original size:352 final size:352
Alignment explanation
Indices: 7644624--7645425 Score: 1094
Period size: 352 Copynumber: 2.3 Consensus size: 352
7644614 TAGTAAGACT
* * *
7644624 TATAGACTTAGTAAGTCTCCAACCGTGTGGAATATTTTAGACTATGAGGAAAAAATGTAATTTTC
1 TATAGACTTA-T-AGTCTCCAACCGTGTGCAATACTTTGGACTATGAGGAAAAAATGTAATTTTC
* ** * *
7644689 GTACCTTTATAAACACGGTAAGTAACTTCCATAAAGGGGGCTCAAATACTAGTAAGACTTAAAAT
64 GTACCTTTATATACACGGTAAGTAACTTCCATAAAAAGGCCTCAAATACTAGCAAGACTTAAAAT
* * *
7644754 CCACATAAATATCTAATAAAAAAAGTCTTCAAAGGAATATAAGCGTTATAGACTTAGTGAGTCTC
129 CCACATAAATATCTAATAAAAAAAGTCTTCAAAAGAATATAAGCATTATAGACTCAGTGAGTCTC
**
7644819 CAATCGTGTGCAATAACTTTGACTATGAGAGACAAATGTAATTTTCATACTTTTATATACAATGT
194 CAATCGTGTGCAATAACTTTGACTATGAGAGACAAATGTAATTTTCATACCATTATATACAATGT
* * * * *
7644884 AAGTAATTTTCATAGAGGAGGCTCAAATACTAGTAAGACACAAGATCCAAAGAAATATTTGATAA
259 AAGTAATTTTCATAAAGGAGGCTCAAATACTAGTAAGACACAAAATCCAAAGAAATATATAAGAA
*
7644949 AGAA-AGTCTTGAAA-GAA-GTATAAGCAC
324 A-AATAGTCTTGAAAGGAATATATAAGCAC
* *
7644976 TATAGACTTAATAGGTCTCCAAGCATGTGCAATACTTTGGACTATGAGGAAAAAATGTAATTTTC
1 TATAGACTT-ATA-GTCTCCAACCGTGTGCAATACTTTGGACTATGAGGAAAAAATGTAATTTTC
* *
7645041 GTACCTTTATATAGACGATAAGTAACTTCCATAAAAAGGCCTCAAATACTAGCAAGACTTAAAAT
64 GTACCTTTATATACACGGTAAGTAACTTCCATAAAAAGGCCTCAAATACTAGCAAGACTTAAAAT
* * * *
7645106 CCACATAAATATCTAATAAAGAAAGTCTTCAAAAGAATATATGCATTATAGAGTCAGTGGGTCTC
129 CCACATAAATATCTAATAAAAAAAGTCTTCAAAAGAATATAAGCATTATAGACTCAGTGAGTCTC
* * * * * **
7645171 CAATTGTGTGCAATAATTTTGACTTTGAGGGACAAATGTATTTTTTGTACCATTATATACAATGT
194 CAATCGTGTGCAATAACTTTGACTATGAGAGACAAATGTAATTTTCATACCATTATATACAATGT
** * *
7645236 AAGTAATTTTCATAAA-GAGGGCTCAAATACTAGTAAGACTTAAAATCCACATAAATATATAAGA
259 AAGTAATTTTCATAAAGGA-GGCTCAAATACTAGTAAGACACAAAATCCAAAGAAATATATAAGA
* *
7645300 AAAATGGTCTTGAAAGGAATATATAAGCAT
323 AAAATAGTCTTGAAAGGAATATATAAGCAC
* * * *
7645330 TATAGACTT-T-GTCTCCAACCGTGTGCAATACTTTGGATTATGAGGGACAAATGTAATTTTTGT
1 TATAGACTTATAGTCTCCAACCGTGTGCAATACTTTGGACTATGAGGAAAAAATGTAATTTTCGT
* *
7645393 ACATTTATATACACGGTAAATAACTTCCATAAA
66 ACCTTTATATACACGGTAAGTAACTTCCATAAA
7645426 GGGGGCTACA
Statistics
Matches: 394, Mismatches: 50, Indels: 14
0.86 0.11 0.03
Matches are distributed among these distances:
350 76 0.19
351 5 0.01
352 292 0.74
353 4 0.01
354 17 0.04
ACGTcount: A:0.40, C:0.14, G:0.16, T:0.30
Consensus pattern (352 bp):
TATAGACTTATAGTCTCCAACCGTGTGCAATACTTTGGACTATGAGGAAAAAATGTAATTTTCGT
ACCTTTATATACACGGTAAGTAACTTCCATAAAAAGGCCTCAAATACTAGCAAGACTTAAAATCC
ACATAAATATCTAATAAAAAAAGTCTTCAAAAGAATATAAGCATTATAGACTCAGTGAGTCTCCA
ATCGTGTGCAATAACTTTGACTATGAGAGACAAATGTAATTTTCATACCATTATATACAATGTAA
GTAATTTTCATAAAGGAGGCTCAAATACTAGTAAGACACAAAATCCAAAGAAATATATAAGAAAA
ATAGTCTTGAAAGGAATATATAAGCAC
Found at i:7648735 original size:20 final size:21
Alignment explanation
Indices: 7648710--7648749 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 21
7648700 ATTTTAGTGG
7648710 ACATCATCTGTT-AAAAAAAA
1 ACATCATCTGTTCAAAAAAAA
7648730 ACATCATCTGTTCAAAAAAA
1 ACATCATCTGTTCAAAAAAA
7648750 CAGCAAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 12 0.63
21 7 0.37
ACGTcount: A:0.53, C:0.17, G:0.05, T:0.25
Consensus pattern (21 bp):
ACATCATCTGTTCAAAAAAAA
Found at i:7651134 original size:82 final size:82
Alignment explanation
Indices: 7650997--7651150 Score: 290
Period size: 82 Copynumber: 1.9 Consensus size: 82
7650987 AAAAGTAGGA
7650997 TTCAAGCCCTGTGTGGTACGGGTTCTATCATTCTGCATATTGTGGTGGACTTTCTCGTAGGATTT
1 TTCAAGCCCTGTGTGGTACGGGTTCTATCATTCTGCATATTGTGGTGGACTTTCTCGTAGGATTT
7651062 TGACAAGAAGATGAGTT
66 TGACAAGAAGATGAGTT
*
7651079 TTCAAGCCCTGTGTGGTATGGGTTCTATCATTCTGCATATTGTGGTGGACTTTCTCGTAGGATTT
1 TTCAAGCCCTGTGTGGTACGGGTTCTATCATTCTGCATATTGTGGTGGACTTTCTCGTAGGATTT
*
7651144 TTACAAG
66 TGACAAG
7651151 CATATTCTCG
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
82 70 1.00
ACGTcount: A:0.19, C:0.16, G:0.26, T:0.38
Consensus pattern (82 bp):
TTCAAGCCCTGTGTGGTACGGGTTCTATCATTCTGCATATTGTGGTGGACTTTCTCGTAGGATTT
TGACAAGAAGATGAGTT
Found at i:7656604 original size:11 final size:10
Alignment explanation
Indices: 7656588--7656626 Score: 51
Period size: 11 Copynumber: 3.7 Consensus size: 10
7656578 ATATCCTTTA
7656588 TTTTATTTATT
1 TTTTATTT-TT
7656599 TTTTATTTTT
1 TTTTATTTTT
*
7656609 TTGTATCTTTT
1 TTTTAT-TTTT
7656620 TTTTATT
1 TTTTATT
7656627 CTAAGTTTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
10 8 0.32
11 17 0.68
ACGTcount: A:0.13, C:0.03, G:0.03, T:0.82
Consensus pattern (10 bp):
TTTTATTTTT
Found at i:7658591 original size:15 final size:14
Alignment explanation
Indices: 7658571--7658604 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
7658561 ACATATTTCA
7658571 TTTTTTCTCCTTCTT
1 TTTTTTCTCC-TCTT
*
7658586 TTTTTTTTCCTCTT
1 TTTTTTCTCCTCTT
7658600 TTTTT
1 TTTTT
7658605 CTTTTTTCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (14 bp):
TTTTTTCTCCTCTT
Found at i:7658609 original size:18 final size:19
Alignment explanation
Indices: 7658566--7658623 Score: 68
Period size: 17 Copynumber: 3.2 Consensus size: 19
7658556 CATACACATA
*
7658566 TTTCATTTTTT-CTCCTTCT
1 TTTC-TTTTTTCCTCCTTTT
7658585 TTT-TTTTTTCCT-CTTTT
1 TTTCTTTTTTCCTCCTTTT
*
7658602 TTTCTTTTTTCTTCCTTTT
1 TTTCTTTTTTCCTCCTTTT
7658621 TTT
1 TTT
7658624 TATTTTATTA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
17 13 0.38
18 10 0.29
19 11 0.32
ACGTcount: A:0.02, C:0.21, G:0.00, T:0.78
Consensus pattern (19 bp):
TTTCTTTTTTCCTCCTTTT
Found at i:7658611 original size:21 final size:20
Alignment explanation
Indices: 7658585--7658629 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
7658575 TTCTCCTTCT
* *
7658585 TTTTTTTTTCCTCTTTTTTTC
1 TTTTTTCTTCCT-TTTTTTTA
7658606 TTTTTTCTTCCTTTTTTTTA
1 TTTTTTCTTCCTTTTTTTTA
7658626 TTTT
1 TTTT
7658630 ATTAAAAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 11 0.50
21 11 0.50
ACGTcount: A:0.02, C:0.16, G:0.00, T:0.82
Consensus pattern (20 bp):
TTTTTTCTTCCTTTTTTTTA
Found at i:7658620 original size:10 final size:10
Alignment explanation
Indices: 7658586--7658624 Score: 53
Period size: 11 Copynumber: 3.8 Consensus size: 10
7658576 TCTCCTTCTT
7658586 TTTTTTTTCC
1 TTTTTTTTCC
7658596 TCTTTTTTT-C
1 T-TTTTTTTCC
7658606 TTTTTTCTTCC
1 TTTTTT-TTCC
7658617 TTTTTTTT
1 TTTTTTTT
7658625 ATTTTATTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
9 5 0.19
10 7 0.27
11 14 0.54
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (10 bp):
TTTTTTTTCC
Found at i:7658629 original size:18 final size:16
Alignment explanation
Indices: 7658571--7658629 Score: 64
Period size: 18 Copynumber: 3.4 Consensus size: 16
7658561 ACATATTTCA
7658571 TTTTTTCTCCTTCTTTT
1 TTTTTTCTCCTT-TTTT
*
7658588 TTTTTTCCTCTTTTTTT
1 TTTTTT-CTCCTTTTTT
7658605 CTTTTTTCTTCCTTTTTT
1 -TTTTTTC-TCCTTTTTT
7658623 TTATTTT
1 TT-TTTT
7658630 ATTAAAAATA
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
17 13 0.36
18 23 0.64
ACGTcount: A:0.02, C:0.19, G:0.00, T:0.80
Consensus pattern (16 bp):
TTTTTTCTCCTTTTTT
Found at i:7686819 original size:16 final size:16
Alignment explanation
Indices: 7686784--7686838 Score: 53
Period size: 16 Copynumber: 3.6 Consensus size: 16
7686774 AAAATTAACC
7686784 AAAA-AAAATA-AATA
1 AAAATAAAATATAATA
* *
7686798 ATAATATAATATAATA
1 AAAATAAAATATAATA
*
7686814 AAAATAAAAAATAA-A
1 AAAATAAAATATAATA
7686829 TAAAATAAAA
1 -AAAATAAAA
7686839 GAAAAAAAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
14 3 0.09
15 6 0.18
16 24 0.73
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (16 bp):
AAAATAAAATATAATA
Found at i:7686820 original size:22 final size:22
Alignment explanation
Indices: 7686800--7686850 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
7686790 AATAAATAAT
*
7686800 AATATAATATAATAAAAATAAAA
1 AATA-AATAAAATAAAAATAAAA
*
7686823 AATAAATAAAAT-AAAAGAAAA
1 AATAAATAAAATAAAAATAAAA
7686844 AA-AAATA
1 AATAAATA
7686851 GAGAGGCTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 5 0.19
21 10 0.38
22 7 0.27
23 4 0.15
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (22 bp):
AATAAATAAAATAAAAATAAAA
Found at i:7686826 original size:26 final size:24
Alignment explanation
Indices: 7686785--7686850 Score: 80
Period size: 26 Copynumber: 2.7 Consensus size: 24
7686775 AAATTAACCA
* *
7686785 AAAAAAATAAATAATAATATAATAT
1 AAAAAAATAAAAAATAA-ATAAAAT
7686810 AATAAAAATAAAAAATAAATAAAAT
1 AA-AAAAATAAAAAATAAATAAAAT
7686835 AAAAGAAA-AAAAAATA
1 AAAA-AAATAAAAAATA
7686851 GAGAGGCTTC
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
24 10 0.27
25 13 0.35
26 14 0.38
ACGTcount: A:0.79, C:0.00, G:0.02, T:0.20
Consensus pattern (24 bp):
AAAAAAATAAAAAATAAATAAAAT
Found at i:7687410 original size:10 final size:10
Alignment explanation
Indices: 7687395--7687435 Score: 55
Period size: 10 Copynumber: 4.0 Consensus size: 10
7687385 AGACGCCATT
7687395 GAGGAAGAAA
1 GAGGAAGAAA
*
7687405 GAGGAAGACA
1 GAGGAAGAAA
*
7687415 GAAGAAGAAA
1 GAGGAAGAAA
7687425 GAGGGAAGAAA
1 GA-GGAAGAAA
7687436 AAGAAAAAAG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
10 19 0.73
11 7 0.27
ACGTcount: A:0.59, C:0.02, G:0.39, T:0.00
Consensus pattern (10 bp):
GAGGAAGAAA
Found at i:7687423 original size:20 final size:20
Alignment explanation
Indices: 7687398--7687446 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
7687388 CGCCATTGAG
*
7687398 GAAGAAAGA-GGAAGACAGAA
1 GAAGAAAGAGGGAAGA-AAAA
7687418 GAAGAAAGAGGGAAGAAAAA
1 GAAGAAAGAGGGAAGAAAAA
*
7687438 GAAAAAAGA
1 GAAGAAAGA
7687447 AAAAGGGGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
20 20 0.77
21 6 0.23
ACGTcount: A:0.65, C:0.02, G:0.33, T:0.00
Consensus pattern (20 bp):
GAAGAAAGAGGGAAGAAAAA
Found at i:7693002 original size:11 final size:11
Alignment explanation
Indices: 7692986--7693018 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
7692976 CTTAAGTTGT
7692986 GAAAAAAGAAA
1 GAAAAAAGAAA
7692997 GAAAAAAG-AA
1 GAAAAAAGAAA
*
7693007 GAAACAAGAAA
1 GAAAAAAGAAA
7693018 G
1 G
7693019 TGAGAGAATG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.76, C:0.03, G:0.21, T:0.00
Consensus pattern (11 bp):
GAAAAAAGAAA
Found at i:7693482 original size:15 final size:16
Alignment explanation
Indices: 7693448--7693483 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
7693438 TGAAAAATAC
7693448 AAAAAAAGAAAAAAGA
1 AAAAAAAGAAAAAAGA
* *
7693464 AAAAAAGGAAGAAAGA
1 AAAAAAAGAAAAAAGA
7693480 AAAA
1 AAAA
7693484 GCATAGAAGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (16 bp):
AAAAAAAGAAAAAAGA
Found at i:7693730 original size:19 final size:20
Alignment explanation
Indices: 7693706--7693753 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
7693696 GCTATCTTAT
7693706 AGAAAGAGATCAT-ACATAG
1 AGAAAGAGATCATCACATAG
7693725 AGAAAGAGATCATCACATAG
1 AGAAAGAGATCATCACATAG
*
7693745 AGAATGAGA
1 AGAAAGAGA
7693754 CCTTGACTTC
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
19 13 0.48
20 14 0.52
ACGTcount: A:0.52, C:0.10, G:0.23, T:0.15
Consensus pattern (20 bp):
AGAAAGAGATCATCACATAG
Found at i:7695087 original size:61 final size:61
Alignment explanation
Indices: 7694992--7695455 Score: 596
Period size: 61 Copynumber: 7.6 Consensus size: 61
7694982 AGATTTGAGT
*
7694992 TTTAAGCCCAATTTAGCTGACATCCAAGATGTTTAAGCCTAGTTATATTGGCACTGAGATG
1 TTTAAGCCCAATTTAGCTGGCATCCAAGATGTTTAAGCCTAGTTATATTGGCACTGAGATG
* * * **
7695053 TTTAAGCCCAATTTAGCGGGCATCCAAAATGTTTAAGCTTAGTTATATTGGCACAAAGATG
1 TTTAAGCCCAATTTAGCTGGCATCCAAGATGTTTAAGCCTAGTTATATTGGCACTGAGATG
* * ** *
7695114 TTTAAGCCCAATTTACCTGGCATCCAAGATGTTTAAGCCTAGTTATACTGGCACCAAGATA
1 TTTAAGCCCAATTTAGCTGGCATCCAAGATGTTTAAGCCTAGTTATATTGGCACTGAGATG
* * * *
7695175 TTTAAGCCCAATTTAGCTGGCATCCAAGATGTTTAAGCCCAGTTATACTAGCACCGAGATG
1 TTTAAGCCCAATTTAGCTGGCATCCAAGATGTTTAAGCCTAGTTATATTGGCACTGAGATG
* * * *
7695236 TTTAAGCCCAATTTAGCTAGCATTCAAGATGTTTAAGCCCAGTTATTTTGGCA-TCGAGATG
1 TTTAAGCCCAATTTAGCTGGCATCCAAGATGTTTAAGCCTAGTTATATTGGCACT-GAGATG
* * * * * *
7695297 CTTAAGCCCAATCTAGCTGGCATCTAAGATGTTTAAG-ATCAGTTATATTGGCATTGGGATG
1 TTTAAGCCCAATTTAGCTGGCATCCAAGATGTTTAAGCCT-AGTTATATTGGCACTGAGATG
* **
7695358 TTTAAGCCCAATTTAGCTAGCATCCAAGATGTTTAAGCCTAGTTATATTGGCACAAAGATG
1 TTTAAGCCCAATTTAGCTGGCATCCAAGATGTTTAAGCCTAGTTATATTGGCACTGAGATG
*
7695419 TTTAAG-CCAAGTTATA-CTGGCA-CCGAGATGTTTAAGC
1 TTTAAGCCCAA-TT-TAGCTGGCATCCAAGATGTTTAAGC
7695456 TCAATTTAGC
Statistics
Matches: 353, Mismatches: 44, Indels: 13
0.86 0.11 0.03
Matches are distributed among these distances:
60 18 0.05
61 331 0.94
62 4 0.01
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31
Consensus pattern (61 bp):
TTTAAGCCCAATTTAGCTGGCATCCAAGATGTTTAAGCCTAGTTATATTGGCACTGAGATG
Found at i:7695478 original size:61 final size:60
Alignment explanation
Indices: 7695413--7695688 Score: 320
Period size: 61 Copynumber: 4.5 Consensus size: 60
7695403 TATTGGCACA
* ** *
7695413 AAGATGTTTAAGCCAAGTTATACTGGCACCGAGATGTTTAAGCTCAATTTAGCTAGCATCC
1 AAGATGTTTAAGCCAA-TTATATTGGCACAAAGATGTTTAAGCCCAATTTAGCTAGCATCC
** ** * *
7695474 AAGATGTTTAAGCCTGGTTATATTGGCACTGAGATG-TTAAGCCCAATTTAGTTGGCATCC
1 AAGATGTTTAAGCC-AATTATATTGGCACAAAGATGTTTAAGCCCAATTTAGCTAGCATCC
* * *
7695534 AAGATGTTTAAACCCAATTATATTGGCACAAAAGATGATTAAGCCCAATTTAGCTGGCATCC
1 AAGATGTTT-AAGCCAATTATATTGGCAC-AAAGATGTTTAAGCCCAATTTAGCTAGCATCC
* * * *
7695596 AAAATGTTTAAACCCAATTATATTGGCATAAAGATGTTTAAGCCCAATTTAGCTAGCATCA
1 AAGATGTTT-AAGCCAATTATATTGGCACAAAGATGTTTAAGCCCAATTTAGCTAGCATCC
* *
7695657 AAGACGTTTAAGCCCAATTATCTTGGCACAAA
1 AAGATGTTTAAG-CCAATTATATTGGCACAAA
7695689 AGAATTTAAG
Statistics
Matches: 187, Mismatches: 23, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
60 44 0.24
61 93 0.50
62 50 0.27
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (60 bp):
AAGATGTTTAAGCCAATTATATTGGCACAAAGATGTTTAAGCCCAATTTAGCTAGCATCC
Found at i:7695480 original size:122 final size:123
Alignment explanation
Indices: 7694992--7695639 Score: 619
Period size: 122 Copynumber: 5.3 Consensus size: 123
7694982 AGATTTGAGT
* **
7694992 TTTAAGCCCAATTTAGCTGACATCCAAGATGTTTAAGCCTAGTTATATTGGCACTGAGATGTTTA
1 TTTAAGCCCAATTTAGCTGGCATCCAAGATGTTTAAGCCTAGTTATATTGGCACCAAGATGTTTA
* * * * *
7695057 AGCCCAATT-TAGCGGGCATCCAAAATGTTTAAGCTTAGTTATATTGGCA-CAAAGATG
66 AGCCCAATTATA-CTGGCATCCAAGATGTTTAAGCTCAGTTATACTGGCATCCAAGATG
* * *
7695114 TTTAAGCCCAATTTACCTGGCATCCAAGATGTTTAAGCCTAGTTATACTGGCACCAAGATATTTA
1 TTTAAGCCCAATTTAGCTGGCATCCAAGATGTTTAAGCCTAGTTATATTGGCACCAAGATGTTTA
* * *
7695179 AGCCCAATT-TAGCTGGCATCCAAGATGTTTAAGCCCAGTTATACTAGCA-CCGAGATG
66 AGCCCAATTATA-CTGGCATCCAAGATGTTTAAGCTCAGTTATACTGGCATCCAAGATG
* * * * * * *
7695236 TTTAAGCCCAATTTAGCTAGCATTCAAGATGTTTAAGCCCAGTTATTTTGGCATCGAGATGCTTA
1 TTTAAGCCCAATTTAGCTGGCATCCAAGATGTTTAAGCCTAGTTATATTGGCACCAAGATGTTTA
* * * * ***
7695301 AGCCCAATCTA-GCTGGCATCTAAGATGTTTAAGATCAGTTATATTGGCAT-TGGGATG
66 AGCCCAAT-TATACTGGCATCCAAGATGTTTAAGCTCAGTTATACTGGCATCCAAGATG
* *
7695358 TTTAAGCCCAATTTAGCTAGCATCCAAGATGTTTAAGCCTAGTTATATTGGCACAAAGATGTTTA
1 TTTAAGCCCAATTTAGCTGGCATCCAAGATGTTTAAGCCTAGTTATATTGGCACCAAGATGTTTA
* * *
7695423 AG-CCAAGTTATACTGGCA-CCGAGATGTTTAAGCTCAATT-TAGCTAGCATCCAAGATG
66 AGCCCAA-TTATACTGGCATCCAAGATGTTTAAGCTCAGTTATA-CTGGCATCCAAGATG
*** * ** * *
7695480 TTTAAGCCTGGTTATA-TTGGCA-CTGAGATG-TTAAGCCCAATT-TAGTTGGCATCCAAGATGT
1 TTTAAGCCCAATT-TAGCTGGCATCCAAGATGTTTAAGCCTAGTTATA-TTGGCA-CCAAGATGT
* * * * * * *
7695541 TTAAACCCAATTATATTGGCA-CAAAAGATGATTAAGCCCAATT-TAGCTGGCATCCAAAATG
63 TTAAGCCCAATTATACTGGCATC-CAAGATGTTTAAGCTCAGTTATA-CTGGCATCCAAGATG
* * *
7695602 TTTAAACCCAATTATA-TTGGCAT-AAAGATGTTTAAGCC
1 TTTAAGCCCAATT-TAGCTGGCATCCAAGATGTTTAAGCC
7695640 CAATTTAGCT
Statistics
Matches: 439, Mismatches: 73, Indels: 27
0.81 0.14 0.05
Matches are distributed among these distances:
119 2 0.00
120 18 0.04
121 57 0.13
122 352 0.80
123 10 0.02
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (123 bp):
TTTAAGCCCAATTTAGCTGGCATCCAAGATGTTTAAGCCTAGTTATATTGGCACCAAGATGTTTA
AGCCCAATTATACTGGCATCCAAGATGTTTAAGCTCAGTTATACTGGCATCCAAGATG
Found at i:7695691 original size:31 final size:31
Alignment explanation
Indices: 7695017--7695691 Score: 223
Period size: 31 Copynumber: 22.1 Consensus size: 31
7695007 GCTGACATCC
* * * *
7695017 AAGATGTTTAAGCCTAGTTATATTGGCAC-T
1 AAGATGTTTAAGCCCAATTATCTTGGCACAA
* * * *
7695047 GAGATGTTTAAGCCCAATTTAGC-GGGCATCCA
1 AAGATGTTTAAGCCCAA-TTATCTTGGCA-CAA
** * *
7695079 AA-ATGTTTAAGCTTAGTTATATTGGCAC-A
1 AAGATGTTTAAGCCCAATTATCTTGGCACAA
* *
7695108 AAGATGTTTAAGCCCAATT-TACCTGGCATC-C
1 AAGATGTTTAAGCCCAATTAT-CTTGGCA-CAA
* * *
7695139 AAGATGTTTAAGCCTAGTTATAC-TGGCAC-C
1 AAGATGTTTAAGCCCAATTAT-CTTGGCACAA
* * *
7695169 AAGATATTTAAGCCCAATTTAGC-TGGCATC-C
1 AAGATGTTTAAGCCCAA-TTATCTTGGCA-CAA
* * *
7695200 AAGATGTTTAAGCCCAGTTATAC-TAGCAC-C
1 AAGATGTTTAAGCCCAATTAT-CTTGGCACAA
* * * ***
7695230 GAGATGTTTAAGCCCAATTTAGC-TAGCATTC
1 AAGATGTTTAAGCCCAA-TTATCTTGGCACAA
* *
7695261 AAGATGTTTAAGCCCAGTTATTTTGGCATC--
1 AAGATGTTTAAGCCCAATTATCTTGGCA-CAA
* * * *
7695291 GAGATGCTTAAGCCCAATCTAGC-TGGCATC-T
1 AAGATGTTTAAGCCCAAT-TATCTTGGCA-CAA
** * * **
7695322 AAGATGTTTAAGATCAGTTATATTGGCA-TT
1 AAGATGTTTAAGCCCAATTATCTTGGCACAA
** * * *
7695352 GGGATGTTTAAGCCCAATTTAGC-TAGCATC-C
1 AAGATGTTTAAGCCCAA-TTATCTTGGCA-CAA
* * *
7695383 AAGATGTTTAAGCCTAGTTATATTGGCAC-A
1 AAGATGTTTAAGCCCAATTATCTTGGCACAA
*
7695413 AAGATGTTTAAG-CCAAGTTATAC-TGGCAC-C
1 AAGATGTTTAAGCCCAA-TTAT-CTTGGCACAA
* * * * *
7695443 GAGATGTTTAAGCTCAATTTAGC-TAGCATC-C
1 AAGATGTTTAAGCCCAA-TTATCTTGGCA-CAA
*** * *
7695474 AAGATGTTTAAGCCTGGTTATATTGGCAC-T
1 AAGATGTTTAAGCCCAATTATCTTGGCACAA
* * *
7695504 GAGATG-TTAAGCCCAATT-TAGTTGGCATC-C
1 AAGATGTTTAAGCCCAATTAT-CTTGGCA-CAA
* *
7695534 AAGATGTTTAAACCCAATTATATTGGCACAA
1 AAGATGTTTAAGCCCAATTATCTTGGCACAA
* * *
7695565 AAGATGATTAAGCCCAATTTAGC-TGGCATCCA
1 AAGATGTTTAAGCCCAA-TTATCTTGGCA-CAA
* * *
7695597 AA-ATGTTTAAACCCAATTATATTGGCA-TA
1 AAGATGTTTAAGCCCAATTATCTTGGCACAA
* *
7695626 AAGATGTTTAAGCCCAATTTAGC-TAGCATC-A
1 AAGATGTTTAAGCCCAA-TTATCTTGGCA-CAA
*
7695657 AAGACGTTTAAGCCCAATTATCTTGGCACAA
1 AAGATGTTTAAGCCCAATTATCTTGGCACAA
7695688 AAGA
1 AAGA
7695692 ATTTAAGTTA
Statistics
Matches: 489, Mismatches: 114, Indels: 83
0.71 0.17 0.12
Matches are distributed among these distances:
28 1 0.00
29 24 0.05
30 215 0.44
31 237 0.48
32 12 0.02
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.31
Consensus pattern (31 bp):
AAGATGTTTAAGCCCAATTATCTTGGCACAA
Found at i:7695964 original size:120 final size:120
Alignment explanation
Indices: 7695765--7696091 Score: 408
Period size: 120 Copynumber: 2.7 Consensus size: 120
7695755 CATCTTTAAG
* *
7695765 ACCTCCGGGTAATTAGTTTTAAGATTTCTTCAAAGTTACACTGCCTCATTTTGAAATGAGGAACA
1 ACCT-CGGGTAATTAGTTTTAAGATTTCTTCAAAGTTACA--GTCTCATTTTGAGATGAGGAACA
* *
7695830 ACCTTTTCTTCTAAAACCTCT-AGGTATATTTTTAAAAACTCCAAGTTCATTCCCAAAA
63 ACCTTTTCTTCTAAAACCTCTCAGGTATATTTTCAAAAACTCCAAGTACATTCCC-AAA
* * *
7695888 ACTTCGGGTAATTAATTTCAAGATTTCTTCAAAGTTACAGTCTCATTTTGAGATGAGGAACAACC
1 ACCTCGGGTAATTAGTTTTAAGATTTCTTCAAAGTTACAGTCTCATTTTGAGATGAGGAACAACC
* * ***
7695953 TTTTCTTCTAAAATCT-TCAGGTATATTTTCAAAACCTCTGGGTACATTCCCAAA
66 TTTTCTTCTAAAACCTCTCAGGTATATTTTCAAAAACTCCAAGTACATTCCCAAA
* * *
7696007 ACCTCTGGGTAATTAGTTTTAAAATTTCTTCAAAGTTAC-GTGACCTCATTTTGAGATAAGGAAT
1 ACCTC-GGGTAATTAGTTTTAAGATTTCTTCAAAGTTACAGT---CTCATTTTGAGATGAGGAAC
* *
7696071 AACTTTTTCTTCTACAACCTC
62 AACCTTTTCTTCTAAAACCTC
7696092 CGAGTAATTA
Statistics
Matches: 177, Mismatches: 21, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
119 10 0.06
120 96 0.54
122 68 0.38
123 3 0.02
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (120 bp):
ACCTCGGGTAATTAGTTTTAAGATTTCTTCAAAGTTACAGTCTCATTTTGAGATGAGGAACAACC
TTTTCTTCTAAAACCTCTCAGGTATATTTTCAAAAACTCCAAGTACATTCCCAAA
Found at i:7696296 original size:3 final size:3
Alignment explanation
Indices: 7696290--7696322 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
7696280 CAAAAAAATA
7696290 AAT AAT AAT -AT AAT -AT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
7696323 AAACAAAGAG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
2 4 0.14
3 24 0.86
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:7696524 original size:5 final size:5
Alignment explanation
Indices: 7696514--7696556 Score: 52
Period size: 5 Copynumber: 8.4 Consensus size: 5
7696504 AAAAAAAATC
*
7696514 AATAA AATAA AAT-A AATAA CTATAA AATAA AATAA TAATAA AA
1 AATAA AATAA AATAA AATAA -AATAA AATAA AATAA -AATAA AA
7696557 AAAGGAATGG
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
4 4 0.12
5 20 0.61
6 9 0.27
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.23
Consensus pattern (5 bp):
AATAA
Found at i:7698164 original size:19 final size:20
Alignment explanation
Indices: 7698133--7698186 Score: 58
Period size: 19 Copynumber: 2.7 Consensus size: 20
7698123 TTTAATTTTA
*
7698133 AATAAATAAAAAATATA-TAT
1 AATAAA-AAAAAATATACAAT
*
7698153 AATGAAAAAAAA-ATACAAT
1 AATAAAAAAAAATATACAAT
7698172 AATAAAATAAAAATA
1 AATAAAA-AAAAATA
7698187 AACTTCAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
18 3 0.11
19 14 0.50
20 10 0.36
21 1 0.04
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.22
Consensus pattern (20 bp):
AATAAAAAAAAATATACAAT
Found at i:7701771 original size:38 final size:39
Alignment explanation
Indices: 7701684--7701798 Score: 164
Period size: 38 Copynumber: 3.0 Consensus size: 39
7701674 ACTCAGCTCA
*
7701684 TGTGCATCCCCCCACATCGTGCACATAGCT-AGAGTCATCG
1 TGTGCATCCCCCCACATCGTGCACA-AG-TAATAGTCATCG
7701724 TGTGCATCCCCCCACATCGTGCACAAGTAATAGT-ATCG
1 TGTGCATCCCCCCACATCGTGCACAAGTAATAGTCATCG
* *
7701762 TGTGCATCCCCCCACATCATGCACAAGCAATA-TCATC
1 TGTGCATCCCCCCACATCGTGCACAAGTAATAGTCATC
7701799 ATCACACTCC
Statistics
Matches: 70, Mismatches: 3, Indels: 6
0.89 0.04 0.08
Matches are distributed among these distances:
37 1 0.01
38 38 0.54
39 6 0.09
40 25 0.36
ACGTcount: A:0.26, C:0.35, G:0.17, T:0.23
Consensus pattern (39 bp):
TGTGCATCCCCCCACATCGTGCACAAGTAATAGTCATCG
Found at i:7707483 original size:176 final size:175
Alignment explanation
Indices: 7707069--7708405 Score: 1531
Period size: 176 Copynumber: 7.6 Consensus size: 175
7707059 GCCCAAAAAT
* * * * * * * * *
7707069 TTAAAATCCACAAAAACATTTGATAGAGAAAGTTTTGAAAGGAATATAAG-GATTTTTGATTTAG
1 TTAAAATCCACATAAATATCTAATAAAGAAAGTCTTGAAAGGAATATAAGCG-TTATAGACTTAG
* ** * *
7707133 TAGG-CTTTCAATCGTGTGGGATACTTTTGACTACGAGGGAAAAACATGTAATTTTCATACCTTT
65 TAGGTC-TCCAATCGTGTGCAATACTTTTGACTATGAGGG-AAAA-ATGTAATTTTCGTACCTTT
* * * * * *
7707197 ATATACACGGCAAGTAACTTCCAT-AAAGAGGTTCAAATACTATTAAGAT
127 ATATACA-AGTAAGTAACTTCCATAAAAGGGGCTCAAATACTAGTAAGAC
* * * *
7707246 TTAAAATCCACATAACTATCTGATAAAGAAAGTCTTGAAAGGAATATAAGCATTGTAGACTTAGT
1 TTAAAATCCACATAAATATCTAATAAAGAAAGTCTTGAAAGGAATATAAGCGTTATAGACTTAGT
* * *
7707311 AGGTCTCCAATCGTGTGCAATACTTTAGACTACGAGGGATAAATGTAATTTTCGTACCTTTATAT
66 AGGTCTCCAATCGTGTGCAATACTTTTGACTATGAGGGAAAAATGTAATTTTCGTACCTTTATAT
*
7707376 ACACAGTAAGTAACTTCCATAAAAGGGGCTCAAATACTAGGAAGAC
131 ACA-AGTAAGTAACTTCCATAAAAGGGGCTCAAATACTAGTAAGAC
* * * *
7707422 TTAAAATGCACATAAATATCTAATAAAGAAAGTCTTAAAAGGAATATAAGTGTTATAGACTTAAT
1 TTAAAATCCACATAAATATCTAATAAAGAAAGTCTTGAAAGGAATATAAGCGTTATAGACTTAGT
* * * * **
7707487 AGGTCTCCAATCGTGTGCAATAATTTTGACTATGAGGGACAAATATAATTTCCACACCTTTATAT
66 AGGTCTCCAATCGTGTGCAATACTTTTGACTATGAGGGAAAAATGTAATTTTCGTACCTTTATAT
* * * *
7707552 ACAATGTAAATAATTTTCTTAAAAGGGGCTCAAATACTAGTAAGAC
131 ACAA-GTAAGTAACTTCCATAAAAGGGGCTCAAATACTAGTAAGAC
* * * * * ** *
7707598 TTAAGATCCACATAAATATTTGATAAAGAAAGTCTTGAAAGGAGTTTAAATGTTATGGACTTAGT
1 TTAAAATCCACATAAATATCTAATAAAGAAAGTCTTGAAAGGAATATAAGCGTTATAGACTTAGT
* * *
7707663 AGGTCTCCAACCGTGTGCAACACTTTAGACTATGA-GGAAAAATGTAA-TTTCGTACCTTTATAT
66 AGGTCTCCAATCGTGTGCAATACTTTTGACTATGAGGGAAAAATGTAATTTTCGTACCTTTATAT
* * *
7707726 ACACGATAAGTAACTTCCATAAATGGGACTCAAATACTAGTAAGAC
131 ACAAG-TAAGTAACTTCCATAAAAGGGGCTCAAATACTAGTAAGAC
*
7707772 TTAAAATCCACATAAATATCTAATAAAGAAAGTCTTGAAAGGAATATAAGCGTTATAGACTTAAT
1 TTAAAATCCACATAAATATCTAATAAAGAAAGTCTTGAAAGGAATATAAGCGTTATAGACTTAGT
* * *
7707837 -GAGTCTCCAATTGAGTGCAATAATTTTGACTATGAGGGATAAAA-GTAATTTTCGTACCTTTAT
66 AG-GTCTCCAATCGTGTGCAATACTTTTGACTATGAGGGA-AAAATGTAATTTTCGTACCTTTAT
* * * *
7707900 ATACAATGTAAGTAATTTTCATAAAGGGGGTTCAAATACTAGTAAGAC
129 ATACAA-GTAAGTAACTTCCATAAAAGGGGCTCAAATACTAGTAAGAC
* * * * * * * *
7707948 CTAAGATCCACATAAATATTTGATAAAAAAAGTCTTGAAAGGAGTATAAGCGTTATTGACTTAAT
1 TTAAAATCCACATAAATATCTAATAAAGAAAGTCTTGAAAGGAATATAAGCGTTATAGACTTAGT
* * * * * * * *
7708013 AGGTCTCCAACCATGGGCAATACTTTGGACTACGAGGAAAAAATGTAATTTGCGTACCTTTATGT
66 AGGTCTCCAATCGTGTGCAATACTTTTGACTATGAGGGAAAAATGTAATTTTCGTACCTTTATAT
* * *
7708078 ACATAGTAAGTAACTTCCATAGAAGGGGTTCAAATAGTAGTAAGAC
131 ACA-AGTAAGTAACTTCCATAAAAGGGGCTCAAATACTAGTAAGAC
* * *
7708124 TTAAAATCCACATAAATATCTAATAAAGAAAGTCTTCAGAGGAATATAAGCGTTATAGAGTTAGT
1 TTAAAATCCACATAAATATCTAATAAAGAAAGTCTTGAAAGGAATATAAGCGTTATAGACTTAGT
* * * * *
7708189 GGGTCTCCAATCGTGTGCAATAATTTTGACTATGAGGGACAAATGTAATTTTTGTATCTTTATAT
66 AGGTCTCCAATCGTGTGCAATACTTTTGACTATGAGGGAAAAATGTAATTTTCGTACCTTTATAT
* * *
7708254 ACAATGTAAGTAATTTTCAT-AAAGAGGGCTCAAATACTAGTACGAC
131 ACAA-GTAAGTAACTTCCATAAAAG-GGGCTCAAATACTAGTAAGAC
* * * **
7708300 TTAAAATACACATAAATATATAATAATA-AAAATCTTTGAAAGGAATGCAAGCGTTATAGACTTA
1 TTAAAATCCACATAAATATCTAATAA-AGAAAGTC-TTGAAAGGAATATAAGCGTTATAGACTTA
* * * * *
7708364 GTAGATCTCGAACCGTGTGCAATACTTTGGACTGTGAGGGAA
64 GTAGGTCTCCAATCGTGTGCAATACTTTTGACTATGAGGGAA
7708406 TGATAAATAA
Statistics
Matches: 983, Mismatches: 160, Indels: 34
0.84 0.14 0.03
Matches are distributed among these distances:
173 2 0.00
174 133 0.14
175 66 0.07
176 633 0.64
177 148 0.15
178 1 0.00
ACGTcount: A:0.39, C:0.13, G:0.17, T:0.30
Consensus pattern (175 bp):
TTAAAATCCACATAAATATCTAATAAAGAAAGTCTTGAAAGGAATATAAGCGTTATAGACTTAGT
AGGTCTCCAATCGTGTGCAATACTTTTGACTATGAGGGAAAAATGTAATTTTCGTACCTTTATAT
ACAAGTAAGTAACTTCCATAAAAGGGGCTCAAATACTAGTAAGAC
Found at i:7708196 original size:526 final size:526
Alignment explanation
Indices: 7707155--7708396 Score: 1535
Period size: 526 Copynumber: 2.3 Consensus size: 526
7707145 CGTGTGGGAT
* * *
7707155 ACTTTTGACTACGAGGGAAAAACATGTAATTTTCATACCTTTATATACACGGCAAGTAACTTCCA
1 ACTTTTGACTATGAGGG-AAAA-ATGTAATTTTCGTACCTTTATATACAC-GTAAGTAACTTCCA
* * * * *
7707220 TAAAGAGGTTCAAATACTATTAAGATTTAAAATCCACATAACTATCTGATAAAGAAAGTCTTGAA
63 TAAAGAGGCTCAAATACTAGTAAGACTTAAAATCCACATAAATATCTAATAAAGAAAGTCTTGAA
* * * * *
7707285 AGGAATATAAGCATTGTAGACTTAGTAGGTCTCCAATCGTGTGCAATACTTTAGACTACGAGGGA
128 AGGAATATAAGCGTTATAGACTTAATAGGTCTCCAATCGAGTGCAATAATTTAGACTACGAGGGA
*
7707350 TAAATGTAATTTTCGTACCTTTATATACACAGTAAGTAACTTCCATAAAAGGGGCTCAAATACTA
193 TAAAAGTAATTTTCGTACCTTTATATACACAGTAAGTAACTTCCATAAAAGGGGCTCAAATACTA
* * * *
7707415 GGAAGACTTAAAATGCACATAAATATCTAATAAAGAAAGTCTTAAAAGGAATATAAGTGTTATAG
258 GGAAGACCTAAAATCCACATAAATATCTAATAAAAAAAGTCTTAAAAGGAATATAAGCGTTATAG
* * * * * * *
7707480 ACTTAATAGGTCTCCAATCGTGTGCAATAATTTTGACTATGAGGGACAAATATAATTTCCACACC
323 ACTTAATAGGTCTCCAACCATGGGCAATAATTTGGACTACGAGGAAAAAATATAATTTCCACACC
* * * *
7707545 TTTATATACAATGTAAATAATTTTCTTAAAAGGGGCTCAAATACTAGTAAGACTTAAGATCCACA
388 TTTATATACAATGTAAATAACTTCCATAAAAGGGGCTCAAATACTAGTAAGACTTAAAATCCACA
* * * * * * *
7707610 TAAATATTTGATAAAGAAAGTCTTGAAAGGAGTTTAAATGTTATGGACTTAGTAGGTCTCCAACC
453 TAAATATCTAATAAAGAAAGTCTTCAAAGGAATATAAACGTTATAGACTTAGTAGGTCTCCAACC
7707675 GTGTGCAAC
518 GTGTGCAAC
*
7707684 ACTTTAGACTATGA-GGAAAAATGTAA-TTTCGTACCTTTATATACACGATAAGTAACTTCCATA
1 ACTTTTGACTATGAGGGAAAAATGTAATTTTCGTACCTTTATATACACG-TAAGTAACTTCCATA
7707747 AATG-GGACTCAAATACTAGTAAGACTTAAAATCCACATAAATATCTAATAAAGAAAGTCTTGAA
65 AA-GAGG-CTCAAATACTAGTAAGACTTAAAATCCACATAAATATCTAATAAAGAAAGTCTTGAA
* * *
7707811 AGGAATATAAGCGTTATAGACTTAAT-GAGTCTCCAATTGAGTGCAATAATTTTGACTATGAGGG
128 AGGAATATAAGCGTTATAGACTTAATAG-GTCTCCAATCGAGTGCAATAATTTAGACTACGAGGG
* * * *
7707875 ATAAAAGTAATTTTCGTACCTTTATATACA-ATGTAAGTAATTTTCATAAAGGGGGTTCAAATAC
192 ATAAAAGTAATTTTCGTACCTTTATATACACA-GTAAGTAACTTCCATAAAAGGGGCTCAAATAC
* * * * * *
7707939 TAGTAAGACCTAAGATCCACATAAATATTTGATAAAAAAAGTCTTGAAAGGAGTATAAGCGTTAT
256 TAGGAAGACCTAAAATCCACATAAATATCTAATAAAAAAAGTCTTAAAAGGAATATAAGCGTTAT
* * * * **
7708004 TGACTTAATAGGTCTCCAACCATGGGCAATACTTTGGACTACGAGGAAAAAATGTAATTTGCGTA
321 AGACTTAATAGGTCTCCAACCATGGGCAATAATTTGGACTACGAGGAAAAAATATAATTTCCACA
* * * * *
7708069 CCTTTATGTAC-ATAGTAAGTAACTTCCATAGAAGGGGTTCAAATAGTAGTAAGACTTAAAATCC
386 CCTTTATATACAAT-GTAAATAACTTCCATAAAAGGGGCTCAAATACTAGTAAGACTTAAAATCC
* * * *
7708133 ACATAAATATCTAATAAAGAAAGTCTTCAGAGGAATATAAGCGTTATAGAGTTAGTGGGTCTCCA
450 ACATAAATATCTAATAAAGAAAGTCTTCAAAGGAATATAAACGTTATAGACTTAGTAGGTCTCCA
* *
7708198 ATCGTGTGCAAT
515 ACCGTGTGCAAC
* * * * * * *
7708210 AATTTTGACTATGAGGGACAAATGTAATTTTTGTATCTTTATATACAATGTAAGTAATTTTCATA
1 ACTTTTGACTATGAGGGAAAAATGTAATTTTCGTACCTTTATATAC-ACGTAAGTAACTTCCATA
* * * *
7708275 AAGAGGGCTCAAATACTAGTACGACTTAAAATACACATAAATATATAATAATA-AAAATCTTTGA
65 AAGA-GGCTCAAATACTAGTAAGACTTAAAATCCACATAAATATCTAATAA-AGAAAGTC-TTGA
** * * * * * * *
7708339 AAGGAATGCAAGCGTTATAGACTTAGTAGATCTCGAACCGTGTGCAATACTTTGGACT
127 AAGGAATATAAGCGTTATAGACTTAATAGGTCTCCAATCGAGTGCAATAATTTAGACT
7708397 GTGAGGGAAT
Statistics
Matches: 610, Mismatches: 89, Indels: 28
0.84 0.12 0.04
Matches are distributed among these distances:
524 1 0.00
525 41 0.07
526 405 0.66
527 16 0.03
528 79 0.13
529 67 0.11
530 1 0.00
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (526 bp):
ACTTTTGACTATGAGGGAAAAATGTAATTTTCGTACCTTTATATACACGTAAGTAACTTCCATAA
AGAGGCTCAAATACTAGTAAGACTTAAAATCCACATAAATATCTAATAAAGAAAGTCTTGAAAGG
AATATAAGCGTTATAGACTTAATAGGTCTCCAATCGAGTGCAATAATTTAGACTACGAGGGATAA
AAGTAATTTTCGTACCTTTATATACACAGTAAGTAACTTCCATAAAAGGGGCTCAAATACTAGGA
AGACCTAAAATCCACATAAATATCTAATAAAAAAAGTCTTAAAAGGAATATAAGCGTTATAGACT
TAATAGGTCTCCAACCATGGGCAATAATTTGGACTACGAGGAAAAAATATAATTTCCACACCTTT
ATATACAATGTAAATAACTTCCATAAAAGGGGCTCAAATACTAGTAAGACTTAAAATCCACATAA
ATATCTAATAAAGAAAGTCTTCAAAGGAATATAAACGTTATAGACTTAGTAGGTCTCCAACCGTG
TGCAAC
Found at i:7711257 original size:176 final size:176
Alignment explanation
Indices: 7711033--7711406 Score: 493
Period size: 176 Copynumber: 2.1 Consensus size: 176
7711023 TCCACAGAGA
* *
7711033 GGCTCAAATACTAGTAAGATTTAAAATCCACATAAATATCTAATAAAGAAAGTCTTGAAAGGAAT
1 GGCTCAAATACTAGTAAGACTTAAAATCCACATAAATATCTAATAAAGAAAGTCTTAAAAGGAAT
* * * * * * *
7711098 ATGAA-CCTTATAGATTTAGTAGGTCTCCAATTATGTGTAATACTTCGGACTATGAGGGACAAAA
66 AT-AAGCATTATAAACTCAGTAGGTCTCCAATCATGTGCAATAATTCGGACTATGAGGGA-AAAA
* * * * *
7711162 -GTAATTTTCATACCTTTATATATACA-GTAAGTAACTTTCATAAAGGG
129 TGTAATTTTCATACCTTGACATACA-ATGCAAGTAACTTTCATAAAAGG
* * *
7711209 GGCTCAAATACTAGTTAGACTTAAAATCCACATCAATATCTAATAAAGAAAGTTTTAAAAGGAAT
1 GGCTCAAATACTAGTAAGACTTAAAATCCACATAAATATCTAATAAAGAAAGTCTTAAAAGGAAT
* * * **
7711274 ATAAGCATTATAAACTCAGTGGGTCTCCAATCGTTTGCAATAATTTTGACTATGAGGGAAAAATG
66 ATAAGCATTATAAACTCAGTAGGTCTCCAATCATGTGCAATAATTCGGACTATGAGGGAAAAATG
*
7711339 TAATTTTCATACCTTGACATACAATGCAAGTAATTTTCATAAAAGG
131 TAATTTTCATACCTTGACATACAATGCAAGTAACTTTCATAAAAGG
7711385 GGCTCAAATACTAGTAAGACTT
1 GGCTCAAATACTAGTAAGACTT
7711407 GTAAACTTAG
Statistics
Matches: 171, Mismatches: 24, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
175 7 0.04
176 164 0.96
ACGTcount: A:0.40, C:0.14, G:0.16, T:0.31
Consensus pattern (176 bp):
GGCTCAAATACTAGTAAGACTTAAAATCCACATAAATATCTAATAAAGAAAGTCTTAAAAGGAAT
ATAAGCATTATAAACTCAGTAGGTCTCCAATCATGTGCAATAATTCGGACTATGAGGGAAAAATG
TAATTTTCATACCTTGACATACAATGCAAGTAACTTTCATAAAAGG
Found at i:7711505 original size:124 final size:124
Alignment explanation
Indices: 7711296--7711530 Score: 328
Period size: 124 Copynumber: 1.9 Consensus size: 124
7711286 AACTCAGTGG
* * * * * *
7711296 GTCTCCAATCGTTTGCAATAATTTTGACTATGAGGGAAAAATGTAATTTTCATACCTTGACATAC
1 GTCTCCAACCGTGTGCAATAATTTGGACTATGAGGAAAAAATGTAATTTTCATACCTTGAAAAAC
* *
7711361 AATGCAAGTAATTTTCATAAAAGGGGCTCAAATACTAGTAAGACTTGTAAACTTAGTAA
66 AAGGCAAGTAATTCTCATAAAAGGGGCTCAAATACTAGTAAGACTTGTAAACTTAGTAA
* *
7711420 GTCTCCAACCGTGTGCAATACTTTGGACTATGAGGAAAAAATGTAATTTTCATACCTTTAAAAAC
1 GTCTCCAACCGTGTGCAATAATTTGGACTATGAGGAAAAAATGTAATTTTCATACCTTGAAAAAC
* * * *
7711485 ACGGTAAGTAACTTCT-ATAAAGGGGGTTCAAATACTAGTAAGACTT
66 AAGGCAAGTAA-TTCTCATAAAAGGGGCTCAAATACTAGTAAGACTT
7711531 AAAATTCACA
Statistics
Matches: 96, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
124 93 0.97
125 3 0.03
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.31
Consensus pattern (124 bp):
GTCTCCAACCGTGTGCAATAATTTGGACTATGAGGAAAAAATGTAATTTTCATACCTTGAAAAAC
AAGGCAAGTAATTCTCATAAAAGGGGCTCAAATACTAGTAAGACTTGTAAACTTAGTAA
Found at i:7712125 original size:14 final size:14
Alignment explanation
Indices: 7712106--7712134 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
7712096 ACATGCATGT
7712106 ACTAGTATTTTAAG
1 ACTAGTATTTTAAG
7712120 ACTAGTATTTTAAG
1 ACTAGTATTTTAAG
7712134 A
1 A
7712135 GCATCAACCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.07, G:0.14, T:0.41
Consensus pattern (14 bp):
ACTAGTATTTTAAG
Found at i:7714406 original size:62 final size:61
Alignment explanation
Indices: 7714304--7714425 Score: 190
Period size: 62 Copynumber: 2.0 Consensus size: 61
7714294 ACAATCGAGT
* *
7714304 TCTTGATCAAAAGTCAAGTCGTCGACGGAACTGAAGGTTCAAACGAGCCTATTCAACCAAG
1 TCTTGATCAAAAGTCAAGTCGTCGACCGAACTGAAAGTTCAAACGAGCCTATTCAACCAAG
* * *
7714365 TCTTGGATCAAAAGTCAAGTCGTTGACCGAACTGAAAGTTCATAGGAGCCTATTCAACCAA
1 TCTT-GATCAAAAGTCAAGTCGTCGACCGAACTGAAAGTTCAAACGAGCCTATTCAACCAA
7714426 CCTGCAAACC
Statistics
Matches: 55, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
61 4 0.07
62 51 0.93
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.23
Consensus pattern (61 bp):
TCTTGATCAAAAGTCAAGTCGTCGACCGAACTGAAAGTTCAAACGAGCCTATTCAACCAAG
Found at i:7719127 original size:2 final size:2
Alignment explanation
Indices: 7719071--7719116 Score: 78
Period size: 2 Copynumber: 24.0 Consensus size: 2
7719061 ATGATTTATT
7719071 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7719111 TA TA TA
1 TA TA TA
7719117 GCATNTATAT
Statistics
Matches: 42, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
1 2 0.05
2 40 0.95
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7719863 original size:354 final size:354
Alignment explanation
Indices: 7719192--7719881 Score: 955
Period size: 354 Copynumber: 1.9 Consensus size: 354
7719182 ATATGAATAG
* * * *
7719192 GATCTTCGTAAAATTCCATACAAAAGTACGATTTAAAGAAGACAAAAAAGGGTAATGAGAGCACC
1 GATCTTCGTAAAATTCCACACAAAAGTACGATTTAAAGAAGACAAAAAAGGATAATGACAACACC
7719257 TGTTTTGTTGAATAACAAAGATAAATAAAATATATGCCTAGTGCTCAACAAAGAAAGGGCTAGGT
66 TGTTTTGTTGAATAACAAAGATAAATAAAATATATGCCTAGTGCTCAACAAAGAAAGGGCTAGGT
*
7719322 AAAATTTCAACTTAAATTGAGGGCTTGAATTTTATGTTTCAGGTGAAATTCCATCAGCTATTGGA
131 --AA--TCAACTTAAATTAAGGGCTTGAATTTTATGTTTCAGGTGAAATTCCATCAGCTATTGGA
* * * * *
7719387 AGCCTGACTTCTATTATACGCCTTGATCTTTCGAATAACAGCTTGACAGGTATAGTATCATCTTT
192 AACCTGACTTCTATTACACGCATTGATCTTTCGAATAACAACTTGACAGGTATAATATCATCTTT
* * * * * * *
7719452 TTTCTCCTTTTTCATATGATACGTGCATATTAATCTGCTATCCTCTTAAGCATTTGAAATGAAAA
257 CTTCTCCTATTTCATATAATACATGCATATCAATCCGCCATCCTCTTAAGCATTTGAAATGAAAA
7719517 TTAAAAACACACACACGCATAATTTATATTAAA
322 TTAAAAACACACACACGCATAATTTATATTAAA
* *
7719550 GATCTTCGTAAAATTCCACACAAAAGTATGATTTAAAGAAGACAAAAACAGGA-ATATGACAATA
1 GATCTTCGTAAAATTCCACACAAAAGTACGATTTAAAGAAGACAAAAA-AGGATA-ATGACAACA
* * *
7719614 CCTGTTTTGTTGAATAATAAAGATAAATAAAATATTTGCCTAGTGCTCAACAAAGAAAGGATCTA
64 CCTGTTTTGTTGAATAACAAAGATAAATAAAATATATGCCTAGTGCTCAACAAAGAAAGG-GCTA
*
7719679 -GT-A-CAACTTTAAATTAAGGGCTTGAATTTTATGTTTCAGGTGAAATTCCATCAGCTGTTGGA
128 GGTAATCAAC-TTAAATTAAGGGCTTGAATTTTATGTTTCAGGTGAAATTCCATCAGCTATTGGA
* * *
7719741 AACCTGTCTTCTATT-CA-GCATATTGAT-TTTCGGATTAACAACTTGGCAGGTATAATATCATC
192 AACCTGACTTCTATTACACGC--ATTGATCTTTC-GAATAACAACTTGACAGGTATAATATCATC
* *
7719803 TTTCTTCTCC-ATTTCATCTAATACATGCATATCAATCCGCCATCCTCTTAAGGTATTTGAAATG
254 TTTCTTCTCCTATTTCATATAATACATGCATATCAATCCGCCATCCTCTTAA-GCATTTGAAATG
*
7719867 AAAATTAAATACACA
318 AAAATTAAAAACACA
7719882 AATAATATAT
Statistics
Matches: 295, Mismatches: 29, Indels: 20
0.86 0.08 0.06
Matches are distributed among these distances:
352 2 0.01
353 43 0.15
354 130 0.44
356 1 0.00
358 47 0.16
359 69 0.23
360 3 0.01
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.32
Consensus pattern (354 bp):
GATCTTCGTAAAATTCCACACAAAAGTACGATTTAAAGAAGACAAAAAAGGATAATGACAACACC
TGTTTTGTTGAATAACAAAGATAAATAAAATATATGCCTAGTGCTCAACAAAGAAAGGGCTAGGT
AATCAACTTAAATTAAGGGCTTGAATTTTATGTTTCAGGTGAAATTCCATCAGCTATTGGAAACC
TGACTTCTATTACACGCATTGATCTTTCGAATAACAACTTGACAGGTATAATATCATCTTTCTTC
TCCTATTTCATATAATACATGCATATCAATCCGCCATCCTCTTAAGCATTTGAAATGAAAATTAA
AAACACACACACGCATAATTTATATTAAA
Found at i:7724661 original size:14 final size:14
Alignment explanation
Indices: 7724619--7724676 Score: 50
Period size: 14 Copynumber: 4.3 Consensus size: 14
7724609 GGATAAATAT
*
7724619 TTTATATTTATTATT
1 TTTAT-TTTATTATA
* * *
7724634 TTTATCTAACTATA
1 TTTATTTTATTATA
7724648 TTTATTTTATTATA
1 TTTATTTTATTATA
7724662 --TATTTT-TTATA
1 TTTATTTTATTATA
7724673 TTTA
1 TTTA
7724677 AGTATTTATC
Statistics
Matches: 34, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
11 5 0.15
12 6 0.18
13 2 0.06
14 16 0.47
15 5 0.15
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.67
Consensus pattern (14 bp):
TTTATTTTATTATA
Found at i:7725148 original size:2 final size:2
Alignment explanation
Indices: 7725141--7725176 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
7725131 NNNNATACTA
7725141 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7725177 TATTCTCTAC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7725244 original size:24 final size:22
Alignment explanation
Indices: 7725198--7725244 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 22
7725188 TTTTTGGGAA
*
7725198 TAAATATTTTTTCTACTTTTTT
1 TAAATATTTTTTCTACTTATTT
*
7725220 TAAATATTCTCTTTTTACTTATTT
1 TAAATATT-T-TTTCTACTTATTT
7725244 T
1 T
7725245 TCTAACCTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 8 0.38
23 1 0.05
24 12 0.57
ACGTcount: A:0.23, C:0.11, G:0.00, T:0.66
Consensus pattern (22 bp):
TAAATATTTTTTCTACTTATTT
Found at i:7732747 original size:11 final size:11
Alignment explanation
Indices: 7732727--7732764 Score: 51
Period size: 10 Copynumber: 3.5 Consensus size: 11
7732717 TACTTTCCTC
7732727 TTTTCCTTTTT
1 TTTTCCTTTTT
7732738 TTTT-CTTTTT
1 TTTTCCTTTTT
*
7732748 TTTGTCCATTTT
1 TTT-TCCTTTTT
7732760 TTTTC
1 TTTTC
7732765 TTTCCCTTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
10 9 0.38
11 7 0.29
12 8 0.33
ACGTcount: A:0.03, C:0.16, G:0.03, T:0.79
Consensus pattern (11 bp):
TTTTCCTTTTT
Found at i:7732978 original size:9 final size:9
Alignment explanation
Indices: 7732964--7733024 Score: 59
Period size: 9 Copynumber: 6.3 Consensus size: 9
7732954 AGAGGGAGAG
7732964 AAAGAAAAA
1 AAAGAAAAA
7732973 AAAGAAAAA
1 AAAGAAAAA
*
7732982 AGAAAAAAGAA
1 A-AAGAAA-AA
*
7732993 AAAGAGGAAAG
1 AAAGA--AAAA
*
7733004 AAAGGAAAA
1 AAAGAAAAA
7733013 AAAGAAAAA
1 AAAGAAAAA
7733022 AAA
1 AAA
7733025 AGTAATATAT
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
9 24 0.57
10 8 0.19
11 8 0.19
12 2 0.05
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (9 bp):
AAAGAAAAA
Found at i:7732978 original size:13 final size:12
Alignment explanation
Indices: 7732962--7733025 Score: 56
Period size: 13 Copynumber: 4.9 Consensus size: 12
7732952 AAAGAGGGAG
7732962 AGAAAGAAAAAAA
1 AGAAA-AAAAAAA
7732975 AGAAAAAAGAAAAA
1 AG-AAAAA-AAAAA
**
7732989 AGAAAAAGAGGAA
1 AGAAAAA-AAAAA
*
7733002 AGAAAGGAAAAAA
1 AGAAA-AAAAAAA
7733015 AGAAAAAAAAA
1 AGAAAAAAAAA
7733026 GTAATATATA
Statistics
Matches: 42, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
12 5 0.12
13 26 0.62
14 11 0.26
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (12 bp):
AGAAAAAAAAAA
Found at i:7732982 original size:7 final size:7
Alignment explanation
Indices: 7732970--7733022 Score: 61
Period size: 7 Copynumber: 6.9 Consensus size: 7
7732960 AGAGAAAGAA
7732970 AAAAAAG
1 AAAAAAG
7732977 AAAAAAG
1 AAAAAAG
7732984 AAAAAAG
1 AAAAAAG
7732991 AAAAAGAGG
1 AAAAA-A-G
7733000 AAAGAAAGG
1 AAA-AAA-G
7733009 AAAAAAAG
1 -AAAAAAG
7733017 AAAAAA
1 AAAAAA
7733023 AAAGTAATAT
Statistics
Matches: 42, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
7 25 0.60
8 2 0.05
9 10 0.24
10 5 0.12
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:7733165 original size:23 final size:23
Alignment explanation
Indices: 7733139--7733191 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
7733129 CAAGGCGTCG
* *
7733139 TCTTGACACGCCACATGTTGCTT
1 TCTTGACACGACACATGGTGCTT
* *
7733162 TCTTGTCATGACACATGGTGCTT
1 TCTTGACACGACACATGGTGCTT
7733185 TCCTTGA
1 T-CTTGA
7733192 AGTGCCACGT
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
23 20 0.83
24 4 0.17
ACGTcount: A:0.17, C:0.26, G:0.19, T:0.38
Consensus pattern (23 bp):
TCTTGACACGACACATGGTGCTT
Found at i:7733369 original size:89 final size:89
Alignment explanation
Indices: 7733218--7733382 Score: 249
Period size: 89 Copynumber: 1.9 Consensus size: 89
7733208 TCTACGTCAG
* * *
7733218 CATGTTAGTGCCACGTGGCACTGTCAAATCTCAAAGTGATATGGCACTATCGAGTCAACATTTTC
1 CATGTTAGTACCACATGGCACTGTCAAATCTCAAAGTAATATGGCACTATCGAGTCAACATTTTC
*
7733283 AGTCCACCTCAAAGACACAAGGCA
66 AATCCACCTCAAAGACACAAGGCA
* * * * *
7733307 CATGTTAGTATCACATGGCATTGTCACATCTCAAAGTAATATGGCACTATTGGGTCAACATTTTC
1 CATGTTAGTACCACATGGCACTGTCAAATCTCAAAGTAATATGGCACTATCGAGTCAACATTTTC
7733372 AATCCACCTCA
66 AATCCACCTCA
7733383 CATACCAAGT
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
89 67 1.00
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (89 bp):
CATGTTAGTACCACATGGCACTGTCAAATCTCAAAGTAATATGGCACTATCGAGTCAACATTTTC
AATCCACCTCAAAGACACAAGGCA
Found at i:7737630 original size:127 final size:125
Alignment explanation
Indices: 7737209--7737631 Score: 414
Period size: 127 Copynumber: 3.4 Consensus size: 125
7737199 CAAAGTAGCG
* * * * * * *
7737209 TGTAATAACTTT-TTTTGAACATAATG-TGTAACAACAATATTTTTTAAATATGGCATTTAAATT
1 TGTAATAACTTTCTTTTCAACATGA-GATGTAAC-A-AATATTTTTTCAACATGACATGTAACTT
* * * * * *
7737272 GGTCTCTATCTTTT-TATTTCATTAAGATATAAACTCTTAGAATTAGA-TTCCTT-AACTATGGT
63 GGTCTTTAT-TTTTGTATTTCATTAAGACATAAACTCTTAGAGTTAAACAT-CTTAAAC-ATGGC
*
7737334 G
125 A
* * * *
7737335 TGTAATAA-TTTTTTTTCAACATGACATGTAACAAATGTCTTTTCAACATGACATGTAACTTGGT
1 TGTAATAACTTTCTTTTCAACATGAGATGTAACAAATATTTTTTCAACATGACATGTAACTTGGT
* * ** * *
7737399 -TTCAATCTTTGTATTTCACCAAGACAT-AATTCTTAGAGTTAAACACCTTAAACATGGCA
66 CTT-TATTTTTGTATTTCATTAAGACATAAACTCTTAGAGTTAAACATCTTAAACATGGCA
* *
7737458 TGTAATAACTTTTCATTTTCAACATGATG-TGTAACCAATTTTTTTTTCAACATGACATGTAACT
1 TGTAATAAC-TTTC-TTTTCAACATGA-GATGTAA-CAAATATTTTTTCAACATGACATGTAACT
*
7737522 TGGTCTTTATTTTTGTATTTCATTAAGACATAAACTCTTGGAGTTAAACATCTTAAACATGGCA
62 TGGTCTTTATTTTTGTATTTCATTAAGACATAAACTCTTAGAGTTAAACATCTTAAACATGGCA
*
7737586 TGTAATAACTTTGCTTTTCAACATGGGATGTAACAACATATTTTTT
1 TGTAATAACTTT-CTTTTCAACATGAGATGTAACAA-ATATTTTTT
7737632 TGGACATAGT
Statistics
Matches: 243, Mismatches: 38, Indels: 31
0.78 0.12 0.10
Matches are distributed among these distances:
123 32 0.13
124 42 0.17
125 7 0.03
126 45 0.19
127 76 0.31
128 41 0.17
ACGTcount: A:0.33, C:0.14, G:0.12, T:0.42
Consensus pattern (125 bp):
TGTAATAACTTTCTTTTCAACATGAGATGTAACAAATATTTTTTCAACATGACATGTAACTTGGT
CTTTATTTTTGTATTTCATTAAGACATAAACTCTTAGAGTTAAACATCTTAAACATGGCA
Found at i:7742866 original size:22 final size:22
Alignment explanation
Indices: 7742841--7742897 Score: 105
Period size: 22 Copynumber: 2.6 Consensus size: 22
7742831 TTGTCACTTG
7742841 TTTCCTTGAATTTTCGCCAAAT
1 TTTCCTTGAATTTTCGCCAAAT
7742863 TTTCCTTGAATTTTCGCCAAAT
1 TTTCCTTGAATTTTCGCCAAAT
*
7742885 TTCCCTTGAATTT
1 TTTCCTTGAATTT
7742898 CTCCACTTAG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.21, C:0.23, G:0.09, T:0.47
Consensus pattern (22 bp):
TTTCCTTGAATTTTCGCCAAAT
Found at i:7748431 original size:43 final size:44
Alignment explanation
Indices: 7748347--7748433 Score: 124
Period size: 43 Copynumber: 2.0 Consensus size: 44
7748337 AGGGGCTATT
* *
7748347 TATAATAGCTAACTAAACATAACCCCTACTTGGTATGCAAGTAA
1 TATAATAGCCAACTAAACATAACACCTACTTGGTATGCAAGTAA
*
7748391 TATAATAGCCAACTAAACCA-AA-ACCTACTTGGTGTGCAAGTAA
1 TATAATAGCCAACTAAA-CATAACACCTACTTGGTATGCAAGTAA
7748434 AGATAATTGT
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
43 19 0.49
44 18 0.46
45 2 0.05
ACGTcount: A:0.41, C:0.21, G:0.13, T:0.25
Consensus pattern (44 bp):
TATAATAGCCAACTAAACATAACACCTACTTGGTATGCAAGTAA
Found at i:7748440 original size:44 final size:44
Alignment explanation
Indices: 7748348--7748440 Score: 118
Period size: 44 Copynumber: 2.1 Consensus size: 44
7748338 GGGGCTATTT
* * *
7748348 ATAATAGCTAACTAAACATAACCCCTACTTGGTATGCAAGTAAT
1 ATAATAGCCAACTAAACATAACACCTACTTGGTATGCAAGTAAG
*
7748392 ATAATAGCCAACTAAACCA-AA-ACCTACTTGGTGTGCAAGTAAAG
1 ATAATAGCCAACTAAA-CATAACACCTACTTGGTATGCAAGT-AAG
7748436 ATAAT
1 ATAAT
7748441 TGTAAATAAG
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
43 17 0.40
44 24 0.56
45 2 0.05
ACGTcount: A:0.43, C:0.19, G:0.13, T:0.25
Consensus pattern (44 bp):
ATAATAGCCAACTAAACATAACACCTACTTGGTATGCAAGTAAG
Found at i:7753209 original size:49 final size:49
Alignment explanation
Indices: 7753152--7753246 Score: 122
Period size: 49 Copynumber: 1.9 Consensus size: 49
7753142 AAGGGGCTAT
* *
7753152 TTATAATAG-CTAACTAAA-TTCAAACTTACTTGGTATGCAAATAAAGTAA
1 TTATAATAGTC-AACTAAACCT-AAACCTACTTGGTATGCAAATAAAGTAA
* *
7753201 TTATAATAGTCAACTAAACCTAAACCTACTTGGTGTGCAAGTAAAG
1 TTATAATAGTCAACTAAACCTAAACCTACTTGGTATGCAAATAAAG
7753247 AAAATAGTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
49 38 0.95
50 2 0.05
ACGTcount: A:0.42, C:0.15, G:0.13, T:0.31
Consensus pattern (49 bp):
TTATAATAGTCAACTAAACCTAAACCTACTTGGTATGCAAATAAAGTAA
Found at i:7759809 original size:2 final size:2
Alignment explanation
Indices: 7759802--7759840 Score: 62
Period size: 2 Copynumber: 19.5 Consensus size: 2
7759792 TCTATCTACC
7759802 TA TA TA TA TA TA TA TA TGA -A TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA T
7759841 GAATTTATTA
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
1 1 0.03
2 33 0.94
3 1 0.03
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
TA
Found at i:7766315 original size:15 final size:15
Alignment explanation
Indices: 7766274--7766316 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 15
7766264 AAAGATTATC
*
7766274 TCAAACAAAATGAAG
1 TCAAACAAGATGAAG
*
7766289 TCAAACATGATGAAG
1 TCAAACAAGATGAAG
*
7766304 TCAATCAAGATGA
1 TCAAACAAGATGA
7766317 CAAAGATGAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.51, C:0.14, G:0.16, T:0.19
Consensus pattern (15 bp):
TCAAACAAGATGAAG
Found at i:7775532 original size:15 final size:14
Alignment explanation
Indices: 7775506--7775539 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
7775496 CGAGAATGAG
7775506 AGATGGCGGATGCC
1 AGATGGCGGATGCC
7775520 AGATGGTCGGATGCC
1 AGATGG-CGGATGCC
*
7775535 GGATG
1 AGATG
7775540 AAAGGAGGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 6 0.33
15 12 0.67
ACGTcount: A:0.21, C:0.18, G:0.44, T:0.18
Consensus pattern (14 bp):
AGATGGCGGATGCC
Found at i:7778322 original size:17 final size:18
Alignment explanation
Indices: 7778291--7778324 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
7778281 AGACTAAATG
*
7778291 AAATAGTTAATTATATTA
1 AAATAGTTAAATATATTA
7778309 AAATA-TTAAATATATT
1 AAATAGTTAAATATATT
7778325 GCCAAAGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (18 bp):
AAATAGTTAAATATATTA
Found at i:7787260 original size:37 final size:37
Alignment explanation
Indices: 7787218--7787292 Score: 114
Period size: 37 Copynumber: 2.0 Consensus size: 37
7787208 AAGGGATACG
* * *
7787218 ATCAGGTCTACATCTTTACGCAGCCTCAACCTTTGCA
1 ATCAGGTCCACATCTTGACGCAGCCTCAACCTCTGCA
*
7787255 ATCAGGTCCACGTCTTGACGCAGCCTCAACCTCTGCA
1 ATCAGGTCCACATCTTGACGCAGCCTCAACCTCTGCA
7787292 A
1 A
7787293 CATGTTCCTT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.24, C:0.35, G:0.16, T:0.25
Consensus pattern (37 bp):
ATCAGGTCCACATCTTGACGCAGCCTCAACCTCTGCA
Found at i:7800678 original size:32 final size:32
Alignment explanation
Indices: 7800642--7800711 Score: 140
Period size: 32 Copynumber: 2.2 Consensus size: 32
7800632 TGGTTTATAT
7800642 TTACTTTTTTATCTGTCATCATGCAACATTTC
1 TTACTTTTTTATCTGTCATCATGCAACATTTC
7800674 TTACTTTTTTATCTGTCATCATGCAACATTTC
1 TTACTTTTTTATCTGTCATCATGCAACATTTC
7800706 TTACTT
1 TTACTT
7800712 CATGCTAGAG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.21, C:0.21, G:0.06, T:0.51
Consensus pattern (32 bp):
TTACTTTTTTATCTGTCATCATGCAACATTTC
Found at i:7808050 original size:23 final size:23
Alignment explanation
Indices: 7808024--7808068 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
7808014 AAAATTTTTC
7808024 AATATCTTTTCAA-AAAA-AATATA
1 AATAT-TTTT-AATAAAATAATATA
7808047 AATATTTTTAATAAAATAATAT
1 AATATTTTTAATAAAATAATAT
7808069 TTTACCTTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 2 0.10
22 8 0.40
23 10 0.50
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (23 bp):
AATATTTTTAATAAAATAATATA
Found at i:7808804 original size:2 final size:2
Alignment explanation
Indices: 7808797--7808821 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7808787 ATACATTGAA
7808797 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
7808822 TTAATTGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:7826556 original size:35 final size:35
Alignment explanation
Indices: 7826490--7826563 Score: 96
Period size: 35 Copynumber: 2.1 Consensus size: 35
7826480 ATGTTCAAGC
7826490 ATCTACAAGAATTAAGTATGTATATTGCATCATCAT
1 ATCTACAAGAATT-AGTATGTATATTGCATCATCAT
* * *
7826526 ATCTACAAGAATT-GTCTTGTATATTTCATCATGAT
1 ATCTACAAGAATTAGT-ATGTATATTGCATCATCAT
7826561 ATC
1 ATC
7826564 AACCCCTCAC
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
34 2 0.06
35 19 0.56
36 13 0.38
ACGTcount: A:0.35, C:0.15, G:0.11, T:0.39
Consensus pattern (35 bp):
ATCTACAAGAATTAGTATGTATATTGCATCATCAT
Found at i:7832505 original size:38 final size:38
Alignment explanation
Indices: 7832463--7832538 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
7832453 CTATCAGGAG
*
7832463 ATGATATCATCAAAATTACATGCACAAGCCAAGACAAT
1 ATGATATCATCAAAATTACATGCACAAGACAAGACAAT
7832501 ATGATATCATCAAAATTACATGCACAAGACAAGACAAT
1 ATGATATCATCAAAATTACATGCACAAGACAAGACAAT
7832539 CAAGGTAGCT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.49, C:0.20, G:0.11, T:0.21
Consensus pattern (38 bp):
ATGATATCATCAAAATTACATGCACAAGACAAGACAAT
Found at i:7842769 original size:13 final size:13
Alignment explanation
Indices: 7842751--7842778 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
7842741 GTTTGGTAAT
7842751 TTTTTTTTATAAG
1 TTTTTTTTATAAG
7842764 TTTTTTTTATAAG
1 TTTTTTTTATAAG
7842777 TT
1 TT
7842779 ATAATTTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.00, G:0.07, T:0.71
Consensus pattern (13 bp):
TTTTTTTTATAAG
Found at i:7842798 original size:18 final size:20
Alignment explanation
Indices: 7842757--7842798 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
7842747 TAATTTTTTT
* *
7842757 TTATAAGTTTTTTTTATAAG
1 TTATAAGTTTTTGTTATAAA
7842777 TTATAA-TTTTTGTTA-AAA
1 TTATAAGTTTTTGTTATAAA
7842795 TTAT
1 TTAT
7842799 CATAGAAGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 6 0.30
19 8 0.40
20 6 0.30
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (20 bp):
TTATAAGTTTTTGTTATAAA
Found at i:7844919 original size:31 final size:30
Alignment explanation
Indices: 7844851--7844919 Score: 70
Period size: 30 Copynumber: 2.3 Consensus size: 30
7844841 TCTGTTTAAT
*
7844851 TTATTTTCATTATTCAATTTTGAAAAGTAA
1 TTATTTTAATTATTCAATTTTGAAAAGTAA
* *
7844881 TTTTTTTAATTA-TCAATATTT-ATAAATGTTA
1 TTATTTTAATTATTCAAT-TTTGA-AAA-GTAA
7844912 TTATTTTA
1 TTATTTTA
7844920 TTCACTCAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
29 6 0.19
30 16 0.50
31 10 0.31
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.57
Consensus pattern (30 bp):
TTATTTTAATTATTCAATTTTGAAAAGTAA
Found at i:7846003 original size:30 final size:29
Alignment explanation
Indices: 7845938--7846010 Score: 83
Period size: 30 Copynumber: 2.5 Consensus size: 29
7845928 TGAAAATTTG
* * *
7845938 AATAAAATTTTATTTTTTTATTGAAATCG
1 AATAAATTTTTATATTTTTATTGAAATCA
* * *
7845967 ATTAAATTTTTATATTTTTATTTTAAATTA
1 AATAAATTTTTATATTTTTA-TTGAAATCA
7845997 AATAAATTTTTATA
1 AATAAATTTTTATA
7846011 ATTAATGATT
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
29 17 0.47
30 19 0.53
ACGTcount: A:0.40, C:0.01, G:0.03, T:0.56
Consensus pattern (29 bp):
AATAAATTTTTATATTTTTATTGAAATCA
Found at i:7846006 original size:29 final size:28
Alignment explanation
Indices: 7845942--7846006 Score: 67
Period size: 29 Copynumber: 2.2 Consensus size: 28
7845932 AATTTGAATA
* * *
7845942 AAATTTTATTTTTTTATTGAAATCGATT
1 AAATTTTATATTTTTATTGAAATCAAAT
* *
7845970 AAATTTTTATATTTTTATTTTAAATTAAAT
1 AAA-TTTTATATTTTTA-TTGAAATCAAAT
7846000 AAATTTT
1 AAATTTT
7846007 TATAATTAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
28 3 0.10
29 16 0.53
30 11 0.37
ACGTcount: A:0.37, C:0.02, G:0.03, T:0.58
Consensus pattern (28 bp):
AAATTTTATATTTTTATTGAAATCAAAT
Found at i:7846157 original size:20 final size:18
Alignment explanation
Indices: 7846120--7846171 Score: 61
Period size: 20 Copynumber: 2.7 Consensus size: 18
7846110 ATGCATATGT
7846120 TATCATGTCACATTAATA
1 TATCATGTCACATTAATA
7846138 TATCATGTCATCATTTAATA
1 TATCATGTCA-CA-TTAATA
7846158 T-TACATGTTCACAT
1 TAT-CATG-TCACAT
7846172 ACCACGTTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
18 10 0.33
19 4 0.13
20 13 0.43
21 3 0.10
ACGTcount: A:0.35, C:0.17, G:0.06, T:0.42
Consensus pattern (18 bp):
TATCATGTCACATTAATA
Found at i:7853158 original size:3 final size:3
Alignment explanation
Indices: 7853150--7853176 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
7853140 GGATCTGTCT
7853150 GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA
7853177 AAAATAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:7871019 original size:15 final size:15
Alignment explanation
Indices: 7870994--7871031 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
7870984 AGTGTTAATG
7870994 TTATAAAAATTATAAA
1 TTAT-AAAATTATAAA
*
7871010 TTATAAAATTATTAA
1 TTATAAAATTATAAA
7871025 TTATAAA
1 TTATAAA
7871032 TATATATACT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 17 0.81
16 4 0.19
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (15 bp):
TTATAAAATTATAAA
Found at i:7879229 original size:25 final size:26
Alignment explanation
Indices: 7879170--7879229 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
7879160 ATATATAAAT
* * *
7879170 AAATATAATCTCTATTTTGGTTTTTG
1 AAATATGATCTCGATTTTAGTTTTTG
*
7879196 AAGTATGATCTCGATTTTAG-TTTTG
1 AAATATGATCTCGATTTTAGTTTTTG
*
7879221 AAATGTGAT
1 AAATATGAT
7879230 TTCTTTCAAT
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
25 12 0.43
26 16 0.57
ACGTcount: A:0.28, C:0.07, G:0.17, T:0.48
Consensus pattern (26 bp):
AAATATGATCTCGATTTTAGTTTTTG
Found at i:7879925 original size:18 final size:18
Alignment explanation
Indices: 7879898--7879939 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
7879888 GTGGTTATAC
*
7879898 TCATTCCTATA-ATCTTCA
1 TCATTTCTATAGAT-TTCA
7879916 TCATTTCTATAGATTTCA
1 TCATTTCTATAGATTTCA
*
7879934 ACATTT
1 TCATTT
7879940 TTGCATGTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 19 0.90
19 2 0.10
ACGTcount: A:0.29, C:0.21, G:0.02, T:0.48
Consensus pattern (18 bp):
TCATTTCTATAGATTTCA
Found at i:7880930 original size:2 final size:2
Alignment explanation
Indices: 7880923--7880951 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
7880913 TAATTAAATG
7880923 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7880952 AAACACAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7881388 original size:20 final size:20
Alignment explanation
Indices: 7881363--7881402 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
7881353 AAAATAAAAC
7881363 TTAATTGGTGA-TTGGATTTT
1 TTAATTGGTGACTT-GATTTT
*
7881383 TTAATTGTTGACTTGATTTT
1 TTAATTGGTGACTTGATTTT
7881403 AACCTTTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 16 0.89
21 2 0.11
ACGTcount: A:0.20, C:0.03, G:0.20, T:0.57
Consensus pattern (20 bp):
TTAATTGGTGACTTGATTTT
Found at i:7883698 original size:15 final size:15
Alignment explanation
Indices: 7883678--7883710 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
7883668 ATGCTCAACA
7883678 AATATTCAGTCACGT
1 AATATTCAGTCACGT
*
7883693 AATATTTAGTCACGT
1 AATATTCAGTCACGT
7883708 AAT
1 AAT
7883711 GCCTATAAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.36
Consensus pattern (15 bp):
AATATTCAGTCACGT
Found at i:7883781 original size:26 final size:26
Alignment explanation
Indices: 7883744--7883828 Score: 97
Period size: 26 Copynumber: 3.4 Consensus size: 26
7883734 CCTATAAACA
*
7883744 AGTCACGCAATGCTCAACAAATATTC
1 AGTCACGTAATGCTCAACAAATATTC
* *
7883770 AGTCACGTAATGC-CTATAAATA---
1 AGTCACGTAATGCTCAACAAATATTC
*
7883792 AGTCACGTGATGCTCAACAAATATTC
1 AGTCACGTAATGCTCAACAAATATTC
*
7883818 AGGCACGTAAT
1 AGTCACGTAAT
7883829 ATTCAGGCAT
Statistics
Matches: 47, Mismatches: 8, Indels: 8
0.75 0.13 0.13
Matches are distributed among these distances:
22 12 0.26
23 7 0.15
25 7 0.15
26 21 0.45
ACGTcount: A:0.38, C:0.22, G:0.15, T:0.25
Consensus pattern (26 bp):
AGTCACGTAATGCTCAACAAATATTC
Found at i:7883783 original size:48 final size:48
Alignment explanation
Indices: 7883730--7883828 Score: 162
Period size: 48 Copynumber: 2.1 Consensus size: 48
7883720 CAAGTCACAC
*
7883730 AATGCCTATAAACAAGTCACGCAATGCTCAACAAATATTCAGTCACGT
1 AATGCCTATAAACAAGTCACGCAATGCTCAACAAATATTCAGGCACGT
* **
7883778 AATGCCTATAAATAAGTCACGTGATGCTCAACAAATATTCAGGCACGT
1 AATGCCTATAAACAAGTCACGCAATGCTCAACAAATATTCAGGCACGT
7883826 AAT
1 AAT
7883829 ATTCAGGCAT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.39, C:0.22, G:0.14, T:0.24
Consensus pattern (48 bp):
AATGCCTATAAACAAGTCACGCAATGCTCAACAAATATTCAGGCACGT
Found at i:7883796 original size:22 final size:22
Alignment explanation
Indices: 7883700--7883804 Score: 102
Period size: 22 Copynumber: 4.6 Consensus size: 22
7883690 CGTAATATTT
7883700 AGTCACGTAATGCCTATAAACA
1 AGTCACGTAATGCCTATAAACA
**
7883722 AGTCACACAATGCCTATAAACA
1 AGTCACGTAATGCCTATAAACA
* * * *
7883744 AGTCACGCAATGCTCAACAAATA
1 AGTCACGTAATGC-CTATAAACA
*
7883767 TTCAGTCACGTAATGCCTATAAATA
1 ---AGTCACGTAATGCCTATAAACA
*
7883792 AGTCACGTGATGC
1 AGTCACGTAATGC
7883805 TCAACAAATA
Statistics
Matches: 69, Mismatches: 10, Indels: 8
0.79 0.11 0.09
Matches are distributed among these distances:
22 44 0.64
23 6 0.09
25 7 0.10
26 12 0.17
ACGTcount: A:0.39, C:0.24, G:0.14, T:0.23
Consensus pattern (22 bp):
AGTCACGTAATGCCTATAAACA
Found at i:7891035 original size:12 final size:13
Alignment explanation
Indices: 7891020--7891051 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
7891010 ATAAAATAAA
7891020 AAATTATA-TTAT
1 AAATTATATTTAT
7891032 AAATT-TATTTAT
1 AAATTATATTTAT
7891044 AAATTATA
1 AAATTATA
7891052 ATAATTTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 2 0.11
12 14 0.78
13 2 0.11
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
AAATTATATTTAT
Found at i:7891080 original size:17 final size:17
Alignment explanation
Indices: 7891038--7891082 Score: 81
Period size: 17 Copynumber: 2.6 Consensus size: 17
7891028 TTATAAATTT
*
7891038 ATTTATAAATTATAATA
1 ATTTATAATTTATAATA
7891055 ATTTATAATTTATAATA
1 ATTTATAATTTATAATA
7891072 ATTTATAATTT
1 ATTTATAATTT
7891083 TAAATTTTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
ATTTATAATTTATAATA
Found at i:7891088 original size:24 final size:25
Alignment explanation
Indices: 7891020--7891089 Score: 72
Period size: 27 Copynumber: 2.8 Consensus size: 25
7891010 ATAAAATAAA
* *
7891020 AAATTAT-ATTATAAATTTATTTAT
1 AAATTATAATTTTAAATTTATTAAT
7891044 AAATTATAATAATTTATAATTTA-TAAT
1 AAATTATAAT--TTTA-AATTTATTAAT
*
7891071 AATTTATAATTTTAAATTT
1 AAATTATAATTTTAAATTT
7891090 TAACCATAAT
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
24 12 0.31
25 6 0.15
27 15 0.38
28 6 0.15
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (25 bp):
AAATTATAATTTTAAATTTATTAAT
Found at i:7893997 original size:2 final size:2
Alignment explanation
Indices: 7893990--7894084 Score: 145
Period size: 2 Copynumber: 46.0 Consensus size: 2
7893980 ACAATCAGAT
7893990 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
7894032 CTT TGA TA TA GTA NA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 -TA T-A TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7894075 TA TA TA TA TA
1 TA TA TA TA TA
7894085 AACTTTTATA
Statistics
Matches: 86, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
2 82 0.95
3 4 0.05
ACGTcount: A:0.47, C:0.01, G:0.02, T:0.48
Consensus pattern (2 bp):
TA
Found at i:7906136 original size:33 final size:32
Alignment explanation
Indices: 7906093--7906154 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 32
7906083 AAAGGAAAAA
7906093 TTGTGACTGTTGGAAATTAAATTAAA-AAAAGGG
1 TTGTGACTGTTGGAAA-TAAA-TAAATAAAAGGG
*
7906126 TTGTGTCTGTTGGAAATAAATAAATAAAA
1 TTGTGACTGTTGGAAATAAATAAATAAAA
7906155 TTTTAAAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
31 4 0.15
32 8 0.30
33 15 0.56
ACGTcount: A:0.44, C:0.03, G:0.21, T:0.32
Consensus pattern (32 bp):
TTGTGACTGTTGGAAATAAATAAATAAAAGGG
Found at i:7909750 original size:44 final size:44
Alignment explanation
Indices: 7909687--7909790 Score: 181
Period size: 44 Copynumber: 2.4 Consensus size: 44
7909677 TACACATGTG
* *
7909687 AATGTATCGATGCATTACCTCTTTTATTTTTGAATTCTTGCTAT
1 AATGTATCGATACATTACCTCTTTTATTTTTGAATTCATGCTAT
7909731 AATGTATCGATACATTACCTCTTTTATTTTTGAATTCATGCTAT
1 AATGTATCGATACATTACCTCTTTTATTTTTGAATTCATGCTAT
*
7909775 AATGTATTGATACATT
1 AATGTATCGATACATT
7909791 TTGCCATGCC
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 57 1.00
ACGTcount: A:0.27, C:0.14, G:0.11, T:0.48
Consensus pattern (44 bp):
AATGTATCGATACATTACCTCTTTTATTTTTGAATTCATGCTAT
Found at i:7915472 original size:54 final size:54
Alignment explanation
Indices: 7915409--7915662 Score: 305
Period size: 54 Copynumber: 4.6 Consensus size: 54
7915399 GATATTATCC
*
7915409 GGCTATGTGCACGATGTGGTGGGATGCACATGAGTTGGGTGAGATAGGATGTCT
1 GGCTATGTGCACGATGTGGTGGGATGCACATGAGTTGGGTGAGATGGGATGTCT
* * * * *
7915463 GGCCATGTGCACGATGTGGTGGGATGCACATGAGCTAGGTGAGTTGGGATGTCC
1 GGCTATGTGCACGATGTGGTGGGATGCACATGAGTTGGGTGAGATGGGATGTCT
* * *
7915517 GGCTATGTGCACGATGTGGTGGGATGCACATGAGCAT-GGTGAGTTGGGATGTTT
1 GGCTATGTGCACGATGTGGTGGGATGCACATGAG-TTGGGTGAGATGGGATGTCT
* *
7915571 GGCTATGTGCGCGATGTGGTGGGATGGGATGCACATGAGTTGGGAGAGATGGGATGT-T
1 GGCTATGTGCACGA--T-GT-GG-TGGGATGCACATGAGTTGGGTGAGATGGGATGTCT
* * *
7915629 CAGCTATATGCACGATGTGGTGGGATGCATATGA
1 -GGCTATGTGCACGATGTGGTGGGATGCACATGA
7915663 TGAATCTTGA
Statistics
Matches: 174, Mismatches: 18, Indels: 16
0.84 0.09 0.08
Matches are distributed among these distances:
54 122 0.70
55 3 0.02
56 3 0.02
57 3 0.02
58 4 0.02
59 39 0.22
ACGTcount: A:0.20, C:0.12, G:0.41, T:0.27
Consensus pattern (54 bp):
GGCTATGTGCACGATGTGGTGGGATGCACATGAGTTGGGTGAGATGGGATGTCT
Found at i:7915488 original size:29 final size:28
Alignment explanation
Indices: 7915455--7915542 Score: 67
Period size: 29 Copynumber: 3.2 Consensus size: 28
7915445 GGGTGAGATA
7915455 GGATGTCTGGCCATGTGCACGATGTGGTG
1 GGATGTC-GGCCATGTGCACGATGTGGTG
* * * * *
7915484 GGATG-C--ACATGAGCTA-GGTGAGTTG
1 GGATGTCGGCCATGTGC-ACGATGTGGTG
*
7915509 GGATGTCCGGCTATGTGCACGATGTGGTG
1 GGATGT-CGGCCATGTGCACGATGTGGTG
7915538 GGATG
1 GGATG
7915543 CACATGAGCA
Statistics
Matches: 42, Mismatches: 11, Indels: 12
0.65 0.17 0.18
Matches are distributed among these distances:
25 17 0.40
26 1 0.02
27 1 0.02
28 2 0.05
29 21 0.50
ACGTcount: A:0.17, C:0.15, G:0.42, T:0.26
Consensus pattern (28 bp):
GGATGTCGGCCATGTGCACGATGTGGTG
Found at i:7917931 original size:13 final size:13
Alignment explanation
Indices: 7917913--7917938 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7917903 TGATAACCAT
7917913 CTCTTTTAAGGAA
1 CTCTTTTAAGGAA
7917926 CTCTTTTAAGGAA
1 CTCTTTTAAGGAA
7917939 GCCATTTGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
CTCTTTTAAGGAA
Found at i:7924301 original size:2 final size:2
Alignment explanation
Indices: 7924294--7924348 Score: 101
Period size: 2 Copynumber: 27.5 Consensus size: 2
7924284 AACGAAAGTC
7924294 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
7924336 AT AC AT AT AT AT A
1 AT AT AT AT AT AT A
7924349 AAAGCATAAT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:7926682 original size:29 final size:29
Alignment explanation
Indices: 7926592--7926708 Score: 92
Period size: 29 Copynumber: 4.0 Consensus size: 29
7926582 CTAGTTCTCA
* * * *
7926592 TACACCTTCTTCTCTTGTACCTATTCATG
1 TACAGCTTCTTCTCTTGTACTTGTTCACG
* * * * ***
7926621 TATATCTTCTTCTCTTTTATTTGTTCTTA
1 TACAGCTTCTTCTCTTGTACTTGTTCACG
7926650 TACAGCTTCTTCTCTTGTACTTGTTCACG
1 TACAGCTTCTTCTCTTGTACTTGTTCACG
* * *
7926679 TACAGTTTTTTCTTTTGTACGTT-TTCACG
1 TACAGCTTCTTCTCTTGTAC-TTGTTCACG
7926708 T
1 T
7926709 GTACTTCTTT
Statistics
Matches: 69, Mismatches: 18, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
29 67 0.97
30 2 0.03
ACGTcount: A:0.15, C:0.23, G:0.09, T:0.53
Consensus pattern (29 bp):
TACAGCTTCTTCTCTTGTACTTGTTCACG
Found at i:7928660 original size:17 final size:18
Alignment explanation
Indices: 7928627--7928660 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7928617 ACCAATTTCA
7928627 AATTAAATTCATCACTTT
1 AATTAAATTCATCACTTT
*
7928645 AATTAACTTC-TCACTT
1 AATTAAATTCATCACTT
7928661 AAAAAAGATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.35, C:0.21, G:0.00, T:0.44
Consensus pattern (18 bp):
AATTAAATTCATCACTTT
Found at i:7942092 original size:58 final size:58
Alignment explanation
Indices: 7942030--7942154 Score: 236
Period size: 58 Copynumber: 2.2 Consensus size: 58
7942020 GTTGTTGTTA
7942030 CTTATTTGTTTTAGTTACAAGAGCATACGACAACTTGTAATGTAGTTTTGCTTAGTGT
1 CTTATTTGTTTTAGTTACAAGAGCATACGACAACTTGTAATGTAGTTTTGCTTAGTGT
7942088 CTTATTTGTTTTAGTTACAAGAGCATACGACAACTTGTAATGTAGTTTTGCTTAGTGT
1 CTTATTTGTTTTAGTTACAAGAGCATACGACAACTTGTAATGTAGTTTTGCTTAGTGT
7942146 -TTA-TTGTTT
1 CTTATTTGTTT
7942155 CTCCTATATG
Statistics
Matches: 67, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
56 6 0.09
57 3 0.04
58 58 0.87
ACGTcount: A:0.25, C:0.11, G:0.18, T:0.46
Consensus pattern (58 bp):
CTTATTTGTTTTAGTTACAAGAGCATACGACAACTTGTAATGTAGTTTTGCTTAGTGT
Found at i:7944142 original size:39 final size:39
Alignment explanation
Indices: 7944067--7944154 Score: 126
Period size: 39 Copynumber: 2.3 Consensus size: 39
7944057 ATTCAATCTT
* *
7944067 GCTGCAGCGAAATTGTAACCTAAAAACAGAATGTTTCTC
1 GCTGCAGCGAAATTGTAACCCAAAAACAGAAAGTTTCTC
7944106 GCTGCAGCGAAATTGCT-ACCCAGAAAA-AGAAAGTTTCTC
1 GCTGCAGCGAAATTG-TAACCCA-AAAACAGAAAGTTTCTC
7944145 GCTGCAGCGA
1 GCTGCAGCGA
7944155 GAAGCTACGT
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
39 40 0.89
40 5 0.11
ACGTcount: A:0.34, C:0.23, G:0.22, T:0.22
Consensus pattern (39 bp):
GCTGCAGCGAAATTGTAACCCAAAAACAGAAAGTTTCTC
Found at i:7944589 original size:43 final size:43
Alignment explanation
Indices: 7944500--7944631 Score: 140
Period size: 43 Copynumber: 3.1 Consensus size: 43
7944490 CCCATCATCA
* * * *
7944500 TCATCACC-AGCTCATGCGCACTCCCTACTCGCACATGGCTGGG
1 TCATCACCGA-CTTATGCGCACTCCCTACTCGCACATAGCCGAG
** **
7944543 TCATCACCGGGTTATGCGCACTCCCTACTCGCACATAATCGAG
1 TCATCACCGACTTATGCGCACTCCCTACTCGCACATAGCCGAG
*** *
7944586 TCATCTTTGACTTATACGCACTCCCTACTCGCACATAGCCGAG
1 TCATCACCGACTTATGCGCACTCCCTACTCGCACATAGCCGAG
7944629 TCA
1 TCA
7944632 ATATAATTAC
Statistics
Matches: 72, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
43 72 1.00
ACGTcount: A:0.22, C:0.36, G:0.17, T:0.24
Consensus pattern (43 bp):
TCATCACCGACTTATGCGCACTCCCTACTCGCACATAGCCGAG
Found at i:7946849 original size:126 final size:126
Alignment explanation
Indices: 7946624--7946874 Score: 502
Period size: 126 Copynumber: 2.0 Consensus size: 126
7946614 TATAGGCCTA
7946624 ATGTCAAATGTAGATCCTGGAACCAACTTGGTCATATTGAAAGAGTATGTAAAAATAAAGGGACT
1 ATGTCAAATGTAGATCCTGGAACCAACTTGGTCATATTGAAAGAGTATGTAAAAATAAAGGGACT
7946689 CATGTGGATGAAAAAGTTACAGTTGTTGAGCAATGTGAAAGTGTTGATGAAGTATTGTTTG
66 CATGTGGATGAAAAAGTTACAGTTGTTGAGCAATGTGAAAGTGTTGATGAAGTATTGTTTG
7946750 ATGTCAAATGTAGATCCTGGAACCAACTTGGTCATATTGAAAGAGTATGTAAAAATAAAGGGACT
1 ATGTCAAATGTAGATCCTGGAACCAACTTGGTCATATTGAAAGAGTATGTAAAAATAAAGGGACT
7946815 CATGTGGATGAAAAAGTTACAGTTGTTGAGCAATGTGAAAGTGTTGATGAAGTATTGTTT
66 CATGTGGATGAAAAAGTTACAGTTGTTGAGCAATGTGAAAGTGTTGATGAAGTATTGTTT
7946875 ATGGTTTAGG
Statistics
Matches: 125, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
126 125 1.00
ACGTcount: A:0.36, C:0.09, G:0.25, T:0.30
Consensus pattern (126 bp):
ATGTCAAATGTAGATCCTGGAACCAACTTGGTCATATTGAAAGAGTATGTAAAAATAAAGGGACT
CATGTGGATGAAAAAGTTACAGTTGTTGAGCAATGTGAAAGTGTTGATGAAGTATTGTTTG
Found at i:7949241 original size:22 final size:22
Alignment explanation
Indices: 7949216--7949260 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
7949206 TGCTCTCCAA
*
7949216 TTGTTTTTTCAGATTTTA-TTCT
1 TTGTTCTTTC-GATTTTACTTCT
*
7949238 TTGTTCTTTCTATTTTACTTCT
1 TTGTTCTTTCGATTTTACTTCT
7949260 T
1 T
7949261 CTTTGTTTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.11, C:0.13, G:0.07, T:0.69
Consensus pattern (22 bp):
TTGTTCTTTCGATTTTACTTCT
Found at i:7959715 original size:14 final size:14
Alignment explanation
Indices: 7959664--7959716 Score: 52
Period size: 14 Copynumber: 3.6 Consensus size: 14
7959654 ATTTTTCTAA
*
7959664 TTAGTTTATTTTTGT
1 TTAG-TTATTTTAGT
* *
7959679 TAAGTTATTTTAATT
1 TTAGTTATTTT-AGT
*
7959694 TTATTTATTTTAGT
1 TTAGTTATTTTAGT
7959708 TTAGTTATT
1 TTAGTTATT
7959717 ATTTATTAGT
Statistics
Matches: 30, Mismatches: 7, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
14 17 0.57
15 13 0.43
ACGTcount: A:0.23, C:0.00, G:0.09, T:0.68
Consensus pattern (14 bp):
TTAGTTATTTTAGT
Found at i:7969410 original size:2 final size:2
Alignment explanation
Indices: 7969403--7969427 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7969393 TGAAAACGAA
7969403 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
7969428 AAGATATTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7970227 original size:27 final size:27
Alignment explanation
Indices: 7970185--7970240 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
7970175 ATATTAAAAA
* *
7970185 TTCCAAATTAATTTTTTTCACTTTACTT
1 TTCCAAATAAATTTTTTTAACTTT-CTT
7970213 TTCCAAA-AAATTTTTTTAACTTTCTT
1 TTCCAAATAAATTTTTTTAACTTTCTT
7970239 TT
1 TT
7970241 ATCTATTCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
26 5 0.19
27 14 0.54
28 7 0.27
ACGTcount: A:0.27, C:0.16, G:0.00, T:0.57
Consensus pattern (27 bp):
TTCCAAATAAATTTTTTTAACTTTCTT
Found at i:7987751 original size:29 final size:29
Alignment explanation
Indices: 7987691--7987754 Score: 76
Period size: 28 Copynumber: 2.2 Consensus size: 29
7987681 GTAAATTTTT
** *
7987691 AAAAATTACACTTTTACCCCCGTAAAGTA
1 AAAAATTACACTTTTACCCCCAAAAACTA
* *
7987720 AAAAATTACATTTTTA-CCCCAAAAACTG
1 AAAAATTACACTTTTACCCCCAAAAACTA
7987748 AAAAATT
1 AAAAATT
7987755 GCCCATAGAC
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 15 0.50
29 15 0.50
ACGTcount: A:0.47, C:0.20, G:0.05, T:0.28
Consensus pattern (29 bp):
AAAAATTACACTTTTACCCCCAAAAACTA
Found at i:7990347 original size:38 final size:38
Alignment explanation
Indices: 7990296--7990371 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
7990286 AAAACTAGAA
7990296 AACCTATTTGTAGTCTAGCTTATTGATTAAGCTTGACC
1 AACCTATTTGTAGTCTAGCTTATTGATTAAGCTTGACC
7990334 AACCTATTTGTAGTCTAGCTTATTGATTAAGCTTGACC
1 AACCTATTTGTAGTCTAGCTTATTGATTAAGCTTGACC
7990372 TTGATTTTCT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.26, C:0.18, G:0.16, T:0.39
Consensus pattern (38 bp):
AACCTATTTGTAGTCTAGCTTATTGATTAAGCTTGACC
Found at i:7999655 original size:2 final size:2
Alignment explanation
Indices: 7999650--7999677 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
7999640 TTTTTTGCCT
7999650 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7999678 GCATCAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Done.