Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21614486
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 1093914 characters in sequence are not A, C, G, or T
File 3 of 54
Found at i:1007590 original size:24 final size:20
Alignment explanation
Indices: 1007539--1007585 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 20
1007529 TGTATTTCAG
1007539 TTTT-TTTTATTATAATTTA
1 TTTTATTTTATTATAATTTA
*
1007558 TTTTATTTTATTTATTATTTA
1 TTTTATTTTA-TTATAATTTA
1007579 TTATTAT
1 TT-TTAT
1007586 CTTTTGTTTG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
19 4 0.17
20 5 0.21
21 11 0.46
22 4 0.17
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (20 bp):
TTTTATTTTATTATAATTTA
Found at i:1015488 original size:149 final size:149
Alignment explanation
Indices: 1015213--1015490 Score: 387
Period size: 149 Copynumber: 1.9 Consensus size: 149
1015203 GATGATGCTA
* * * *
1015213 CAATAAAAATAATCAAGATGAAAACCATCAGATTATTAGAATATTTAATGCTAACTCACATAAGT
1 CAATAAAAATAATCAAGATGAAAACCATCAGATTATCAAAATATTTAATCCTAACTCACATAAGA
* * * *
1015278 AACTGTTTACCTATACTAACCCTTCCTTCAACCAAGTCCTGCGTTCCAATCTTTGCAAAACACTG
66 AACTATTTACCTATACTAACCCTTCCTTCAACCAAGTCCTGCGTGCCAATATTTACAAAACACTG
1015343 AACCCAAGATAAGATACTG
131 AACCCAAGATAAGATACTG
* * *
1015362 CAATAAAAATAATCAAGATGAAAATCATCATATTATCAAAATATTTCATCCTAACTCACAT-AGA
1 CAATAAAAATAATCAAGATGAAAACCATCAGATTATCAAAATATTTAATCCTAACTCACATAAG-
** * * * *
1015426 AAACTATTTAGTTGTACTAACCCTTCCTTCAGCCAAGTCCTGTGTGCCAATATTTACCAAACACT
65 AAACTATTTACCTATACTAACCCTTCCTTCAACCAAGTCCTGCGTGCCAATATTTACAAAACACT
1015491 TTTGAAGCAG
Statistics
Matches: 111, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
148 2 0.02
149 109 0.98
ACGTcount: A:0.40, C:0.23, G:0.09, T:0.29
Consensus pattern (149 bp):
CAATAAAAATAATCAAGATGAAAACCATCAGATTATCAAAATATTTAATCCTAACTCACATAAGA
AACTATTTACCTATACTAACCCTTCCTTCAACCAAGTCCTGCGTGCCAATATTTACAAAACACTG
AACCCAAGATAAGATACTG
Found at i:1040195 original size:4 final size:4
Alignment explanation
Indices: 1040181--1040226 Score: 74
Period size: 4 Copynumber: 11.5 Consensus size: 4
1040171 TAAAAAGTAA
* *
1040181 ATAT CTAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT AAAT AT
1 ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT AT
1040227 CAAAGTAAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
4 38 1.00
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (4 bp):
ATAT
Found at i:1040195 original size:6 final size:6
Alignment explanation
Indices: 1040181--1040226 Score: 74
Period size: 6 Copynumber: 7.7 Consensus size: 6
1040171 TAAAAAGTAA
* *
1040181 ATATCT ATATAT ATATAT ATATAT ATATAT ATATAT ATATAA ATAT
1 ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT ATAT
1040227 CAAAGTAAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 38 1.00
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (6 bp):
ATATAT
Found at i:1042519 original size:12 final size:12
Alignment explanation
Indices: 1042502--1042527 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
1042492 AAAAAAAAAT
1042502 TTATTTTTATAA
1 TTATTTTTATAA
1042514 TTATTTTTATAA
1 TTATTTTTATAA
1042526 TT
1 TT
1042528 TAAGTTAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (12 bp):
TTATTTTTATAA
Found at i:1057150 original size:15 final size:15
Alignment explanation
Indices: 1057130--1057161 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
1057120 ATTCTCGTTT
1057130 TATCATCAAATAATC
1 TATCATCAAATAATC
1057145 TATCATCAAATAATC
1 TATCATCAAATAATC
1057160 TA
1 TA
1057162 AGTGGTATTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.47, C:0.19, G:0.00, T:0.34
Consensus pattern (15 bp):
TATCATCAAATAATC
Found at i:1074293 original size:2 final size:2
Alignment explanation
Indices: 1074286--1074328 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
1074276 TAACATTTTG
1074286 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1074328 A
1 A
1074329 CTTCTTGATT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:1077204 original size:72 final size:72
Alignment explanation
Indices: 1077125--1077274 Score: 291
Period size: 72 Copynumber: 2.1 Consensus size: 72
1077115 GAAACCTCTC
*
1077125 ACAACTCAATCATTTAGATTTGTCATGGAACTATTTTAGTGGACAAATTCCATCCTCACTTACAA
1 ACAACTCAATCATTTAGATTTGTCATGGAACTATTTTAGTGAACAAATTCCATCCTCACTTACAA
1077190 ACCTAAG
66 ACCTAAG
1077197 ACAACTCAATCATTTAGATTTGTCATGGAACTATTTTAGTGAACAAATTCCATCCTCACTTACAA
1 ACAACTCAATCATTTAGATTTGTCATGGAACTATTTTAGTGAACAAATTCCATCCTCACTTACAA
1077262 ACCTAAG
66 ACCTAAG
1077269 ACAACT
1 ACAACT
1077275 TGAATTCTTT
Statistics
Matches: 77, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 77 1.00
ACGTcount: A:0.36, C:0.23, G:0.10, T:0.31
Consensus pattern (72 bp):
ACAACTCAATCATTTAGATTTGTCATGGAACTATTTTAGTGAACAAATTCCATCCTCACTTACAA
ACCTAAG
Found at i:1079017 original size:27 final size:27
Alignment explanation
Indices: 1078979--1079034 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
1078969 CAAGGAGCTG
*
1078979 TGACAACACTGAGGCACCCTTTTTTCA
1 TGACAACACTGAGGCACCCATTTTTCA
* *
1079006 TGACAGCACTGAGGCACTCATTTTTCA
1 TGACAACACTGAGGCACCCATTTTTCA
1079033 TG
1 TG
1079035 TGGAAGCAGA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (27 bp):
TGACAACACTGAGGCACCCATTTTTCA
Found at i:1079896 original size:12 final size:12
Alignment explanation
Indices: 1079879--1079904 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
1079869 TGAGCTTTAC
1079879 ATATATGTATAT
1 ATATATGTATAT
1079891 ATATATGTATAT
1 ATATATGTATAT
1079903 AT
1 AT
1079905 GTATATTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (12 bp):
ATATATGTATAT
Found at i:1089705 original size:27 final size:27
Alignment explanation
Indices: 1089667--1089722 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
1089657 CAAGGAGCTG
*
1089667 TGACAACACTGAGGCACCCTTTTTTCA
1 TGACAACACTGAGGCACCCATTTTTCA
*
1089694 TGACAGCACTGAGGCACCCATTTTTCA
1 TGACAACACTGAGGCACCCATTTTTCA
1089721 TG
1 TG
1089723 TGGAAGCAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.29
Consensus pattern (27 bp):
TGACAACACTGAGGCACCCATTTTTCA
Found at i:1094906 original size:51 final size:51
Alignment explanation
Indices: 1094848--1094981 Score: 178
Period size: 51 Copynumber: 2.6 Consensus size: 51
1094838 TCTTTGTTAG
*
1094848 AAAGAAAAACTTTTAAGCATTTTGAGCATTTTGGAGTAGTTTTTGAGACAC
1 AAAGAAAAACTTTTAAGCATTTTGAGCATTTTAGAGTAGTTTTTGAGACAC
* * * * * * * *
1094899 GAAGAAAAACTTTTGAGTATTTTGAGTATTTTAGAGTGGTTTTTGATATAT
1 AAAGAAAAACTTTTAAGCATTTTGAGCATTTTAGAGTAGTTTTTGAGACAC
*
1094950 AAAGAAAAACTTTTTAGCATTTTGAGCATTTT
1 AAAGAAAAACTTTTAAGCATTTTGAGCATTTT
1094982 TCATCAAATA
Statistics
Matches: 70, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
51 70 1.00
ACGTcount: A:0.34, C:0.07, G:0.19, T:0.40
Consensus pattern (51 bp):
AAAGAAAAACTTTTAAGCATTTTGAGCATTTTAGAGTAGTTTTTGAGACAC
Found at i:1095128 original size:22 final size:22
Alignment explanation
Indices: 1095104--1095187 Score: 96
Period size: 22 Copynumber: 3.8 Consensus size: 22
1095094 ACGTAACCGG
* * *
1095104 TTTTTAGGCATTACGTGATTAG
1 TTTTTAGGCATTGCGTGACTAA
**
1095126 TTTTTAAACATTGCGTGACTAA
1 TTTTTAGGCATTGCGTGACTAA
* *
1095148 TTTTTAGGTATTGCATGACTAA
1 TTTTTAGGCATTGCGTGACTAA
*
1095170 TTTTTAGGTATTGCGTGA
1 TTTTTAGGCATTGCGTGA
1095188 TTGATTGATA
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 52 1.00
ACGTcount: A:0.25, C:0.10, G:0.20, T:0.45
Consensus pattern (22 bp):
TTTTTAGGCATTGCGTGACTAA
Found at i:1095271 original size:22 final size:23
Alignment explanation
Indices: 1095219--1095271 Score: 72
Period size: 23 Copynumber: 2.3 Consensus size: 23
1095209 GACTGGTTGA
*
1095219 TAGGCATTGTGTGACTAGTTAGT
1 TAGGCATTGTGTGACTAATTAGT
* *
1095242 AAGGCATTGTGTGACTAATT-TT
1 TAGGCATTGTGTGACTAATTAGT
1095264 TAGGCATT
1 TAGGCATT
1095272 ACCTGAAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
22 8 0.31
23 18 0.69
ACGTcount: A:0.25, C:0.09, G:0.26, T:0.40
Consensus pattern (23 bp):
TAGGCATTGTGTGACTAATTAGT
Found at i:1111817 original size:2 final size:2
Alignment explanation
Indices: 1111812--1111876 Score: 73
Period size: 2 Copynumber: 33.0 Consensus size: 2
1111802 TTTGGACTCC
* *
1111812 CT CT CT CT CT CT CT CT CT CT CT CT CT -T CC CT ACT ANT C- CT C-
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT -CT -CT CT CT CT
1111853 CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT
1111877 TTCCACATTC
Statistics
Matches: 55, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
1 3 0.05
2 48 0.87
3 4 0.07
ACGTcount: A:0.03, C:0.49, G:0.00, T:0.46
Consensus pattern (2 bp):
CT
Found at i:1113435 original size:16 final size:16
Alignment explanation
Indices: 1113416--1113466 Score: 52
Period size: 15 Copynumber: 3.3 Consensus size: 16
1113406 TGAAGGACAA
*
1113416 AAAGGTGGAAGAGAAG
1 AAAGATGGAAGAGAAG
* * *
1113432 AAAGATGCAGGTGAA-
1 AAAGATGGAAGAGAAG
1113447 AAAGATGG-AGAGAAG
1 AAAGATGGAAGAGAAG
1113462 AAAGA
1 AAAGA
1113467 GCCAAAATCA
Statistics
Matches: 27, Mismatches: 7, Indels: 3
0.73 0.19 0.08
Matches are distributed among these distances:
14 4 0.15
15 12 0.44
16 11 0.41
ACGTcount: A:0.53, C:0.02, G:0.37, T:0.08
Consensus pattern (16 bp):
AAAGATGGAAGAGAAG
Found at i:1117717 original size:2 final size:2
Alignment explanation
Indices: 1117712--1117741 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
1117702 CTCTGAGTGT
1117712 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1117742 AAATATTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:1118773 original size:8 final size:8
Alignment explanation
Indices: 1118749--1118788 Score: 62
Period size: 8 Copynumber: 5.0 Consensus size: 8
1118739 TTAATTATAT
*
1118749 TAAAAATA
1 TAAAAAAA
*
1118757 TATAAAAA
1 TAAAAAAA
1118765 TAAAAAAA
1 TAAAAAAA
1118773 TAAAAAAA
1 TAAAAAAA
1118781 TAAAAAAA
1 TAAAAAAA
1118789 AATTAATAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 29 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.17
Consensus pattern (8 bp):
TAAAAAAA
Found at i:1118799 original size:10 final size:9
Alignment explanation
Indices: 1118749--1118799 Score: 52
Period size: 10 Copynumber: 5.6 Consensus size: 9
1118739 TTAATTATAT
1118749 TAAAAATATA
1 TAAAAATA-A
1118759 TAAAAATAA
1 TAAAAATAA
1118768 -AAAAATAA
1 TAAAAATAA
1118776 -AAAAATAAA
1 TAAAAAT-AA
*
1118785 AAAAAATTAA
1 TAAAAA-TAA
1118795 TAAAA
1 TAAAA
1118800 TTATTTGTTC
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
8 14 0.38
9 3 0.08
10 19 0.51
11 1 0.03
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (9 bp):
TAAAAATAA
Found at i:1122806 original size:20 final size:20
Alignment explanation
Indices: 1122781--1122818 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
1122771 TGGACATGTC
*
1122781 TTTGTATTTCGCTATAAGTA
1 TTTGTATTTAGCTATAAGTA
1122801 TTTGTATTTAGCTATAAG
1 TTTGTATTTAGCTATAAG
1122819 CATTAGTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.26, C:0.08, G:0.16, T:0.50
Consensus pattern (20 bp):
TTTGTATTTAGCTATAAGTA
Found at i:1141405 original size:39 final size:40
Alignment explanation
Indices: 1141362--1141449 Score: 117
Period size: 39 Copynumber: 2.2 Consensus size: 40
1141352 TTAAAAGAAA
* *
1141362 AAGAAATTAAAATATAATATATAATA-TAAAAAT-TATATT
1 AAGAAATGAAAATAAAATATATAATATTAAAAATATATA-T
*
1141401 AAGAAATGAAAATAAAATATATGATATTAAAAATATATAT
1 AAGAAATGAAAATAAAATATATAATATTAAAAATATATAT
*
1141441 AAGAGATGA
1 AAGAAATGA
1141450 TATTATATAA
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
39 23 0.53
40 16 0.37
41 4 0.09
ACGTcount: A:0.61, C:0.00, G:0.08, T:0.31
Consensus pattern (40 bp):
AAGAAATGAAAATAAAATATATAATATTAAAAATATATAT
Found at i:1141654 original size:15 final size:15
Alignment explanation
Indices: 1141636--1141679 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
1141626 TATTATCTTC
* *
1141636 CTTATAATTATATTA
1 CTTATAATCACATTA
*
1141651 CTTACAATCACATTA
1 CTTATAATCACATTA
*
1141666 CCTATAATCACATT
1 CTTATAATCACATT
1141680 GCATTATAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.39, C:0.20, G:0.00, T:0.41
Consensus pattern (15 bp):
CTTATAATCACATTA
Found at i:1147550 original size:12 final size:12
Alignment explanation
Indices: 1147517--1147550 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
1147507 AAAAAAAACA
1147517 AATATAAATAAT
1 AATATAAATAAT
1147529 AATGAT-AATAAT
1 AAT-ATAAATAAT
1147541 AATATAAATA
1 AATATAAATA
1147551 GAAAAAAAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
11 2 0.10
12 16 0.80
13 2 0.10
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (12 bp):
AATATAAATAAT
Found at i:1147976 original size:2 final size:2
Alignment explanation
Indices: 1147927--1147961 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
1147917 NNNNNNNNNN
1147927 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1147962 CTTGATGCAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:1149165 original size:35 final size:35
Alignment explanation
Indices: 1149106--1149239 Score: 155
Period size: 35 Copynumber: 3.8 Consensus size: 35
1149096 GCTGGTTTAT
*
1149106 GAGGGAAAAAGGAAGAGAACTTGCTGCCGATTTTGA
1 GAGGGAAAAAGAAAGAGAA-TTGCTGCCGATTTTGA
* ** *
1149142 GAGGGAGAAATGAGGGA-AATTGCTGTCGATTTTGA
1 GAGGGA-AAAAGAAAGAGAATTGCTGCCGATTTTGA
*
1149177 GAGGGAAAAAGAAAGAGACTTGCTGCC-AGTTTTGA
1 GAGGGAAAAAGAAAGAGAATTGCTGCCGA-TTTTGA
**
1149212 GAGGGAAAAAGAAAGAGTCTTGCTGCCG
1 GAGGGAAAAAGAAAGAGAATTGCTGCCG
1149240 GATTCAGGAG
Statistics
Matches: 83, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
34 8 0.10
35 61 0.73
36 8 0.10
37 6 0.07
ACGTcount: A:0.35, C:0.10, G:0.34, T:0.20
Consensus pattern (35 bp):
GAGGGAAAAAGAAAGAGAATTGCTGCCGATTTTGA
Found at i:1153821 original size:2 final size:2
Alignment explanation
Indices: 1153814--1153911 Score: 130
Period size: 2 Copynumber: 50.5 Consensus size: 2
1153804 TACTTTTAAC
1153814 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
1153856 TA TA TA TA TN NA T- TA -A TA T- TA TA TA TA TA TA AA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
1153895 TA TA GA TA TA GA TA TA T
1 TA TA TA TA TA TA TA TA T
1153912 CCTTCATTAG
Statistics
Matches: 83, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
1 3 0.04
2 80 0.96
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.47
Consensus pattern (2 bp):
TA
Found at i:1164041 original size:38 final size:36
Alignment explanation
Indices: 1163952--1164058 Score: 99
Period size: 36 Copynumber: 2.9 Consensus size: 36
1163942 TTTGATATAC
* *
1163952 TTCTAACTCAAGCCACTAGGGTTAATTGTGGTTTTGA
1 TTCTGACTCATGCCACT-GGGTTAATTGTGGTTTTGA
* * *
1163989 TTCTGATTCGTGCCACTGGGTTAATTGTGGTTTTCTA
1 TTCTGACTCATGCCACTGGGTTAATTGTGGTTTT-GA
* *
1164026 TTTCTGAC-CTATGCCACAGGGATTAAGTGTGGT
1 -TTCTGACTC-ATGCCACTGGG-TTAATTGTGGT
1164059 CGTAGCATGT
Statistics
Matches: 57, Mismatches: 9, Indels: 6
0.79 0.12 0.08
Matches are distributed among these distances:
36 17 0.30
37 15 0.26
38 15 0.26
39 10 0.18
ACGTcount: A:0.20, C:0.17, G:0.24, T:0.39
Consensus pattern (36 bp):
TTCTGACTCATGCCACTGGGTTAATTGTGGTTTTGA
Found at i:1165541 original size:21 final size:22
Alignment explanation
Indices: 1165507--1165555 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 22
1165497 TACTATTTGC
1165507 TTTTTAATTGTTTATCTTT-TCT
1 TTTTTAATTGTTTA-CTTTCTCT
*
1165529 TTTTTACTT-TTTACTTTCTCT
1 TTTTTAATTGTTTACTTTCTCT
1165550 TCTTTT
1 T-TTTT
1165556 TTTGCAAAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
20 4 0.17
21 8 0.33
22 12 0.50
ACGTcount: A:0.10, C:0.14, G:0.02, T:0.73
Consensus pattern (22 bp):
TTTTTAATTGTTTACTTTCTCT
Found at i:1173543 original size:72 final size:71
Alignment explanation
Indices: 1173321--1173536 Score: 263
Period size: 72 Copynumber: 3.0 Consensus size: 71
1173311 GATCTTGCCT
* * * * * *
1173321 ACAACAATTTCAGTGGACAAATTCCTTCCTCGCTTGGAAACCTCACCAATCTTGAATACCTCTCC
1 ACAACAATCTCAATGGACAAATTCCATCCTCACTTGGAAACCTCACCAATCTT-AATATCTCTAC
* *
1173386 CTATTTA
65 CTCTATA
* * * * *
1173393 ACAACAATCTCAACGGACAAATTCCATCTTCA-TTCGGAAACCTCACCAATATTAAAACTCTTTA
1 ACAACAATCTCAATGGACAAATTCCATCCTCACTT-GGAAACCTCACCAATCTTAATA-TCTCTA
*
1173457 CCTCTACA
64 CCTCTATA
1173465 ACAACAATCTCAATGGACAAATTCCATCCTCACTTGGAAACCTCACCAATCTTCAATATCTCTAC
1 ACAACAATCTCAATGGACAAATTCCATCCTCACTTGGAAACCTCACCAATCTT-AATATCTCTAC
1173530 CTCTATA
65 CTCTATA
1173537 GAAACAAGCT
Statistics
Matches: 120, Mismatches: 20, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
71 5 0.04
72 110 0.92
73 5 0.04
ACGTcount: A:0.34, C:0.31, G:0.07, T:0.28
Consensus pattern (71 bp):
ACAACAATCTCAATGGACAAATTCCATCCTCACTTGGAAACCTCACCAATCTTAATATCTCTACC
TCTATA
Found at i:1176714 original size:18 final size:18
Alignment explanation
Indices: 1176691--1176728 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
1176681 GTATGAAATT
1176691 TTATCAATAACGGCAAGA
1 TTATCAATAACGGCAAGA
* *
1176709 TTATCATTAATGGCAAGA
1 TTATCAATAACGGCAAGA
1176727 TT
1 TT
1176729 TGTAAAGTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.13, G:0.16, T:0.32
Consensus pattern (18 bp):
TTATCAATAACGGCAAGA
Found at i:1184496 original size:18 final size:18
Alignment explanation
Indices: 1184469--1184507 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
1184459 ACACGATTAA
1184469 TAACACGTTTAACACGAT
1 TAACACGTTTAACACGAT
* *
1184487 TAACATGTTTAACATGAT
1 TAACACGTTTAACACGAT
1184505 TAA
1 TAA
1184508 ATAAAAATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.41, C:0.15, G:0.10, T:0.33
Consensus pattern (18 bp):
TAACACGTTTAACACGAT
Found at i:1184584 original size:15 final size:15
Alignment explanation
Indices: 1184566--1184609 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
1184556 TTATAATTAT
*
1184566 AAAAATAATTATAAC
1 AAAAATAATAATAAC
1184581 AAAAATAATAATAAC
1 AAAAATAATAATAAC
*
1184596 ATCAAAT-ATAATAA
1 A-AAAATAATAATAA
1184610 AATTTAATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
15 22 0.85
16 4 0.15
ACGTcount: A:0.68, C:0.07, G:0.00, T:0.25
Consensus pattern (15 bp):
AAAAATAATAATAAC
Found at i:1192228 original size:23 final size:23
Alignment explanation
Indices: 1192184--1192229 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
1192174 TTGGGCCTAC
* *
1192184 CCTTCCTTGTTTCCACTGGGCCT
1 CCTTCCTTGTTGCCACTAGGCCT
* *
1192207 CCTTCCTTGTTGCTATTAGGCCT
1 CCTTCCTTGTTGCCACTAGGCCT
1192230 TTCTCATGGG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.07, C:0.35, G:0.17, T:0.41
Consensus pattern (23 bp):
CCTTCCTTGTTGCCACTAGGCCT
Found at i:1203151 original size:45 final size:46
Alignment explanation
Indices: 1203023--1203194 Score: 170
Period size: 46 Copynumber: 3.8 Consensus size: 46
1203013 TTTATAACAT
* ** * * * *
1203023 ATGAAATTTTATCAATAACGATAAAATATGTGAAA-CTTTATATCGA
1 ATGAAATTTTACCAATAACGGCAAGATTTGT-AAAGTTTTGTATCGA
* *
1203069 ATGAAATTTTACCAATAACGGCAAGATTTGTAAAGTTTTGTGTTGA
1 ATGAAATTTTACCAATAACGGCAAGATTTGTAAAGTTTTGTATCGA
* *
1203115 ATGAAATTTT-CTCAATAA-GGCAAGATTTGTGAAGTTTTGTATCAA
1 ATGAAATTTTAC-CAATAACGGCAAGATTTGTAAAGTTTTGTATCGA
** * *
1203160 ATGAAATTTTATGAATAACGTCAACATTTGTAAAG
1 ATGAAATTTTACCAATAACGGCAAGATTTGTAAAG
1203195 CGGAATGTTC
Statistics
Matches: 104, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
45 42 0.40
46 62 0.60
ACGTcount: A:0.40, C:0.09, G:0.16, T:0.36
Consensus pattern (46 bp):
ATGAAATTTTACCAATAACGGCAAGATTTGTAAAGTTTTGTATCGA
Found at i:1205830 original size:15 final size:15
Alignment explanation
Indices: 1205781--1205834 Score: 54
Period size: 15 Copynumber: 3.6 Consensus size: 15
1205771 ATACCAAACA
* *
1205781 CTGCAATTATCTTTC
1 CTGCAATCATATTTC
* *
1205796 CTGTAATCATATTGC
1 CTGCAATCATATTTC
* *
1205811 TTGCAATCATATTTT
1 CTGCAATCATATTTC
1205826 CTGCAATCA
1 CTGCAATCA
1205835 CATTATCTAT
Statistics
Matches: 30, Mismatches: 9, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.26, C:0.22, G:0.09, T:0.43
Consensus pattern (15 bp):
CTGCAATCATATTTC
Found at i:1209060 original size:72 final size:72
Alignment explanation
Indices: 1208980--1209194 Score: 290
Period size: 72 Copynumber: 3.0 Consensus size: 72
1208970 TTGATCTTGC
* ** *
1208980 CAACAACAATTTCAGTGGACAAATTCCTTCCTCGCTTGGAAACCTCACCAATCTTCAATACCTCT
1 CAACAACAATCTCAACGGACAAATTCCATCCTCGCTTGGAAACCTCACCAATCTTCAATACCTCT
*
1209045 CCCTCTT
66 ACCTCTT
* * * * *
1209052 CAACAACAATCTCAACAGACAAATTCCATCCTCGTTTGGAAACCTCACCAA-CATTAAAAACCTT
1 CAACAACAATCTCAACGGACAAATTCCATCCTCGCTTGGAAACCTCACCAATC-TTCAATACCTC
*
1209116 TACCTCCAT
65 TACCT-CTT
*
1209125 -AACAACAATCTCAACGGACAAATTCCATCCTCGCTTGGAAACCTCACCAATCTTCAATATCTCT
1 CAACAACAATCTCAACGGACAAATTCCATCCTCGCTTGGAAACCTCACCAATCTTCAATACCTCT
1209189 ACCTCT
66 ACCTCT
1209195 ACAGAAATAT
Statistics
Matches: 122, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
71 2 0.02
72 117 0.96
73 3 0.02
ACGTcount: A:0.33, C:0.34, G:0.07, T:0.26
Consensus pattern (72 bp):
CAACAACAATCTCAACGGACAAATTCCATCCTCGCTTGGAAACCTCACCAATCTTCAATACCTCT
ACCTCTT
Found at i:1216653 original size:46 final size:46
Alignment explanation
Indices: 1216555--1216653 Score: 139
Period size: 46 Copynumber: 2.2 Consensus size: 46
1216545 AAAATTTTAT
*
1216555 CATTTGTGAAGCTTTGTATCGAATGAAATTTTATCAATAACACTAA
1 CATTTGTAAAGCTTTGTATCGAATGAAATTTTATCAATAACACTAA
* *
1216601 -AGTTTGTAAAGTTTTGTATCGAATGAAATTTTATGAATAACAGC-AA
1 CA-TTTGTAAAGCTTTGTATCGAATGAAATTTTATCAATAACA-CTAA
1216647 CATTTGT
1 CATTTGT
1216654 GAAACAGAAT
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
45 1 0.02
46 44 0.94
47 2 0.04
ACGTcount: A:0.36, C:0.10, G:0.15, T:0.38
Consensus pattern (46 bp):
CATTTGTAAAGCTTTGTATCGAATGAAATTTTATCAATAACACTAA
Found at i:1227418 original size:22 final size:22
Alignment explanation
Indices: 1227390--1227433 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
1227380 TTACATTCTA
1227390 TAAATTTCG-TCATTCAAAAAAT
1 TAAATTT-GATCATTCAAAAAAT
*
1227412 TAAATTTGATCATTTAAAAAAT
1 TAAATTTGATCATTCAAAAAAT
1227434 CTGATTTGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 1 0.05
22 19 0.95
ACGTcount: A:0.48, C:0.09, G:0.05, T:0.39
Consensus pattern (22 bp):
TAAATTTGATCATTCAAAAAAT
Found at i:1256580 original size:39 final size:39
Alignment explanation
Indices: 1256508--1256583 Score: 109
Period size: 39 Copynumber: 1.9 Consensus size: 39
1256498 CTTATCACTT
1256508 TTTTTTCTTTTTTTTTTAATTTAAATTTAATTTTTGGGA
1 TTTTTTCTTTTTTTTTTAATTTAAATTTAATTTTTGGGA
* * *
1256547 TTTTTTCTTTTTTTTATT-TTTTAGATTTTATTTTTGG
1 TTTTTTCTTTTTTTT-TTAATTTAAATTTAATTTTTGG
1256584 AAGGTGGTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
39 31 0.94
40 2 0.06
ACGTcount: A:0.16, C:0.03, G:0.08, T:0.74
Consensus pattern (39 bp):
TTTTTTCTTTTTTTTTTAATTTAAATTTAATTTTTGGGA
Found at i:1260008 original size:21 final size:21
Alignment explanation
Indices: 1259982--1260032 Score: 102
Period size: 21 Copynumber: 2.4 Consensus size: 21
1259972 CGATCGATGT
1259982 GAAATTCACGACTTCGATTTA
1 GAAATTCACGACTTCGATTTA
1260003 GAAATTCACGACTTCGATTTA
1 GAAATTCACGACTTCGATTTA
1260024 GAAATTCAC
1 GAAATTCAC
1260033 AATCCCTCTC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.35, C:0.20, G:0.14, T:0.31
Consensus pattern (21 bp):
GAAATTCACGACTTCGATTTA
Found at i:1265774 original size:268 final size:270
Alignment explanation
Indices: 1265294--1265822 Score: 839
Period size: 268 Copynumber: 2.0 Consensus size: 270
1265284 ATGTTTTAAT
* *
1265294 AATTTAGATAGCAAAAGCCTTAGGATATTGTCACAAGAAAATCCCAACCTCAAGAACCCTAGGAT
1 AATTTAGATAGAAAAAGCCTTAGGATAATGTCACAAGAAAATCCCAACCTCAAGAACCCTAGGAT
* * * * *
1265359 CCTATCCTATCTTTTAATTGATTCTTTTTTTGATATTATTTTTCTATGTCTTTTGCGATAAATAT
66 CCAATCCTATCTTCTAATTGAATCTATTTTTGATATTATTTTTCTATGTCTTTTGAGATAAATAT
* * **
1265424 TAAAGGTTATGATTTTCGATTTATATCCGCAATTACGGGTTTTTCATGTGAGGCACTTTTGTGGT
131 TAAAGGTTATGATTCTCGATTTATATCCACAATTACGGGTTTTTCATGTGAGGCACACTTGTGGT
* * *
1265489 CTAATGATGAATTAGAAAATTAATTTGGAGCCTTAAATTTTAAGAATCAAATTGAAGAACTTTGA
196 CTAATGACGAATTAGAAAA-TAATTTGGAGCCTTAAATATTAAGAATCAAATCGAAGAACTTTGA
1265554 ATTCCTTCCTG
260 ATTCCTTCCTG
* *
1265565 AATTTAGATAGAAAAAGCCTTAGGATAATGTCACAAGAATATGCCAACCTCAAGAACCCTAGGAT
1 AATTTAGATAGAAAAAGCCTTAGGATAATGTCACAAGAAAATCCCAACCTCAAGAACCCTAGGAT
* *
1265630 CCAATCCTATCTTCTAATT-AAT-TATTTTT-ATATTATTTTTTTATGTTTTTTGAGATAAATAT
66 CCAATCCTATCTTCTAATTGAATCTATTTTTGATATTATTTTTCTATGTCTTTTGAGATAAATAT
* *
1265692 TAAAGGTTATGATTCTCGATTTATATCCACGATTACTGGTTTTTCATGTGAGGCACACTTGTGGT
131 TAAAGGTTATGATTCTCGATTTATATCCACAATTACGGGTTTTTCATGTGAGGCACACTTGTGGT
*
1265757 CTAATGACGAATTAGAAAATAATTTGGAGCTTTAAATATTAAGAATCAAATCGAAGAACTTTGAA
196 CTAATGACGAATTAGAAAATAATTTGGAGCCTTAAATATTAAGAATCAAATCGAAGAACTTTGAA
1265822 T
261 T
1265823 AAGAAAAAAT
Statistics
Matches: 237, Mismatches: 21, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
267 44 0.19
268 107 0.45
269 6 0.03
270 2 0.01
271 78 0.33
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.38
Consensus pattern (270 bp):
AATTTAGATAGAAAAAGCCTTAGGATAATGTCACAAGAAAATCCCAACCTCAAGAACCCTAGGAT
CCAATCCTATCTTCTAATTGAATCTATTTTTGATATTATTTTTCTATGTCTTTTGAGATAAATAT
TAAAGGTTATGATTCTCGATTTATATCCACAATTACGGGTTTTTCATGTGAGGCACACTTGTGGT
CTAATGACGAATTAGAAAATAATTTGGAGCCTTAAATATTAAGAATCAAATCGAAGAACTTTGAA
TTCCTTCCTG
Found at i:1274426 original size:2 final size:2
Alignment explanation
Indices: 1274419--1274521 Score: 190
Period size: 2 Copynumber: 51.5 Consensus size: 2
1274409 AACAGAGGAG
1274419 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GNA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G-A
1274462 -A GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1274503 GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA G
1274522 GGGAGAAGTA
Statistics
Matches: 99, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.01
2 97 0.98
3 1 0.01
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:1301966 original size:2 final size:2
Alignment explanation
Indices: 1301959--1301983 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
1301949 GATAGCACGA
1301959 AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG A
1301984 AGCAGATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:1317619 original size:2 final size:2
Alignment explanation
Indices: 1317612--1317664 Score: 52
Period size: 2 Copynumber: 26.5 Consensus size: 2
1317602 GAACTTTATT
* * * * *
1317612 TA TA TA TA CA TG TA TA TG TA CA TA TA TA TG TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
1317654 TA CA TA TA TA T
1 TA TA TA TA TA T
1317665 GCGTACATAT
Statistics
Matches: 39, Mismatches: 12, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.43, C:0.06, G:0.06, T:0.45
Consensus pattern (2 bp):
TA
Found at i:1317674 original size:14 final size:12
Alignment explanation
Indices: 1317612--1317665 Score: 72
Period size: 12 Copynumber: 4.5 Consensus size: 12
1317602 GAACTTTATT
* *
1317612 TATATATACATG
1 TATATGTACATA
1317624 TATATGTACATA
1 TATATGTACATA
*
1317636 TATATGTATATA
1 TATATGTACATA
*
1317648 TATATATACATA
1 TATATGTACATA
1317660 TATATG
1 TATATG
1317666 CGTACATATG
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 36 1.00
ACGTcount: A:0.43, C:0.06, G:0.07, T:0.44
Consensus pattern (12 bp):
TATATGTACATA
Found at i:1325893 original size:2 final size:2
Alignment explanation
Indices: 1325888--1325943 Score: 103
Period size: 2 Copynumber: 28.0 Consensus size: 2
1325878 AATTGGCACC
1325888 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
1325930 AT AT AT AT GT AT AT
1 AT AT AT AT AT AT AT
1325944 GTTCTAGAAG
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 52 1.00
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1329470 original size:11 final size:12
Alignment explanation
Indices: 1329433--1329474 Score: 59
Period size: 12 Copynumber: 3.4 Consensus size: 12
1329423 TCAAAACGGT
1329433 ATATTTTTAATA
1 ATATTTTTAATA
1329445 ATATTTTTCATATA
1 ATATTTTT-A-ATA
1329459 AT-TTTTTAATA
1 ATATTTTTAATA
1329470 ATATT
1 ATATT
1329475 ATAAACAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
11 5 0.19
12 11 0.41
13 6 0.22
14 5 0.19
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (12 bp):
ATATTTTTAATA
Found at i:1331013 original size:29 final size:29
Alignment explanation
Indices: 1330981--1331036 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
1330971 TTTTTTTTTT
*
1330981 GTATAATATC-ATGTCATTTCATTTTATAC
1 GTATAA-ATCTATCTCATTTCATTTTATAC
* *
1331010 GTATCAATCTATCTCATTTTATTTTAT
1 GTATAAATCTATCTCATTTCATTTTAT
1331037 TATACTTCTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 3 0.13
29 20 0.87
ACGTcount: A:0.29, C:0.14, G:0.05, T:0.52
Consensus pattern (29 bp):
GTATAAATCTATCTCATTTCATTTTATAC
Found at i:1332756 original size:2 final size:2
Alignment explanation
Indices: 1332749--1332782 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
1332739 GCTAGCTCAG
1332749 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1332783 TATTGTTTTC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:1339721 original size:31 final size:31
Alignment explanation
Indices: 1339683--1339776 Score: 188
Period size: 31 Copynumber: 3.0 Consensus size: 31
1339673 ACTCTTAGGT
1339683 GCATCTGTTTTCCAACAAAGTCCTAAAGCAG
1 GCATCTGTTTTCCAACAAAGTCCTAAAGCAG
1339714 GCATCTGTTTTCCAACAAAGTCCTAAAGCAG
1 GCATCTGTTTTCCAACAAAGTCCTAAAGCAG
1339745 GCATCTGTTTTCCAACAAAGTCCTAAAGCAG
1 GCATCTGTTTTCCAACAAAGTCCTAAAGCAG
1339776 G
1 G
1339777 ATATGCTCCC
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.26
Consensus pattern (31 bp):
GCATCTGTTTTCCAACAAAGTCCTAAAGCAG
Found at i:1343949 original size:22 final size:23
Alignment explanation
Indices: 1343923--1343965 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
1343913 ATCAGATCAA
*
1343923 TAATTA-TATTTAAAGTAAAAAT
1 TAATTATTATTTAAAATAAAAAT
*
1343945 TAATTATTTTTTAAAATAAAA
1 TAATTATTATTTAAAATAAAA
1343966 TAAAATTACA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (23 bp):
TAATTATTATTTAAAATAAAAAT
Found at i:1352164 original size:65 final size:65
Alignment explanation
Indices: 1351981--1352166 Score: 210
Period size: 65 Copynumber: 2.9 Consensus size: 65
1351971 AAACAAATAG
* * * * * * * * *
1351981 ATTATTATCGAGATTAAAACATAGATTATAACTAAATACGCAGATAAAGATAGTAATCTTAATAA
1 ATTATTATCAAGATTAAGACGTAAATTATAACCAAATACGCAGACAGAGATAATAATCTTAACAA
* * * * * * *
1352046 ATTGTTATCAAAATTAAGACGTAAATTATAATCAAATACGTAAACAGATATAATGATCTTAACAA
1 ATTATTATCAAGATTAAGACGTAAATTATAACCAAATACGCAGACAGAGATAATAATCTTAACAA
* *
1352111 ATTATTATTAAGATTAAGACGTAAATTATAACCAAATACGCAGACAGGGATAATAA
1 ATTATTATCAAGATTAAGACGTAAATTATAACCAAATACGCAGACAGAGATAATAA
1352167 GTTTACTAAT
Statistics
Matches: 96, Mismatches: 25, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
65 96 1.00
ACGTcount: A:0.49, C:0.10, G:0.11, T:0.30
Consensus pattern (65 bp):
ATTATTATCAAGATTAAGACGTAAATTATAACCAAATACGCAGACAGAGATAATAATCTTAACAA
Found at i:1354271 original size:29 final size:29
Alignment explanation
Indices: 1354237--1354294 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
1354227 AAGAGGAAAT
* *
1354237 TCAGGAGTGTAATTTGAATCCTGCTTTGG
1 TCAGGAGTGTAATCTGAATCCTGCATTGG
*
1354266 TCAGGAGTGTAATCTGAGTCCTGCATTGG
1 TCAGGAGTGTAATCTGAATCCTGCATTGG
1354295 ATTCTGGGTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.21, C:0.16, G:0.29, T:0.34
Consensus pattern (29 bp):
TCAGGAGTGTAATCTGAATCCTGCATTGG
Found at i:1354784 original size:2 final size:2
Alignment explanation
Indices: 1354777--1354807 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
1354767 GTGAGTCATG
1354777 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1354808 CTGCTAATGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1362675 original size:20 final size:20
Alignment explanation
Indices: 1362650--1362687 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
1362640 GATTCATCGG
*
1362650 CATTGGTCAATTTGTTTTCT
1 CATTGGCCAATTTGTTTTCT
*
1362670 CATTGGCCTATTTGTTTT
1 CATTGGCCAATTTGTTTT
1362688 AATGGCATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.13, C:0.16, G:0.16, T:0.55
Consensus pattern (20 bp):
CATTGGCCAATTTGTTTTCT
Found at i:1368084 original size:45 final size:45
Alignment explanation
Indices: 1368018--1368239 Score: 327
Period size: 45 Copynumber: 4.9 Consensus size: 45
1368008 GAATTGAACT
* * *
1368018 ACACAAGGTTCGCTACCCCAGGGCCTGAGCCACCCATGGGAAATC
1 ACACAAGGATGGCTACTCCAGGGCCTGAGCCACCCATGGGAAATC
* **
1368063 ATACAAGGATGGCTACTCCAGGGCCTGAGCCATTCATGGGAAATC
1 ACACAAGGATGGCTACTCCAGGGCCTGAGCCACCCATGGGAAATC
**
1368108 ACACAAGGATGGCTACTCCAGGGCCTGAGCCATTCATGGGAAATC
1 ACACAAGGATGGCTACTCCAGGGCCTGAGCCACCCATGGGAAATC
* * *
1368153 ACACAAGAATGGCAACTCCAGGGCCTGAGCCACCTATGGGAAATC
1 ACACAAGGATGGCTACTCCAGGGCCTGAGCCACCCATGGGAAATC
* *
1368198 ACACAAGGATGGGTACTCCAGGGCCTGAGCCACGCATGGGAA
1 ACACAAGGATGGCTACTCCAGGGCCTGAGCCACCCATGGGAA
1368240 CTCAAAATGC
Statistics
Matches: 160, Mismatches: 17, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 160 1.00
ACGTcount: A:0.29, C:0.28, G:0.27, T:0.15
Consensus pattern (45 bp):
ACACAAGGATGGCTACTCCAGGGCCTGAGCCACCCATGGGAAATC
Found at i:1368281 original size:24 final size:24
Alignment explanation
Indices: 1368249--1368295 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
1368239 ACTCAAAATG
1368249 CCTTTTATGATCCAAGAGGCCCTT
1 CCTTTTATGATCCAAGAGGCCCTT
**
1368273 CCTTTTATGATCTTAGAGGCCCT
1 CCTTTTATGATCCAAGAGGCCCT
1368296 CCCGTTCCCG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.19, C:0.28, G:0.17, T:0.36
Consensus pattern (24 bp):
CCTTTTATGATCCAAGAGGCCCTT
Found at i:1374954 original size:22 final size:22
Alignment explanation
Indices: 1374928--1374976 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
1374918 ACGTAATTAG
* * *
1374928 TTTTAGGCATTGCGTGACTAAT
1 TTTTAGACATTACATGACTAAT
*
1374950 TTTTATACATTACATGACTAAT
1 TTTTAGACATTACATGACTAAT
1374972 TTTTA
1 TTTTA
1374977 AGCAATGCCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.29, C:0.12, G:0.12, T:0.47
Consensus pattern (22 bp):
TTTTAGACATTACATGACTAAT
Found at i:1375021 original size:23 final size:24
Alignment explanation
Indices: 1374988--1375576 Score: 244
Period size: 26 Copynumber: 24.9 Consensus size: 24
1374978 GCAATGCCTA
* *
1374988 AGTCACACAATGCCTTA-CGAACT
1 AGTCACGCAATGCCTTATCAAACT
* * *
1375011 AGTCACGCAATGCTTTA-CTAACA
1 AGTCACGCAATGCCTTATCAAACT
* * *
1375034 AGTCACGCAATGCTTTA-CTAACA
1 AGTCACGCAATGCCTTATCAAACT
1375057 AGTCACGCAATGCC-TATC-AACT
1 AGTCACGCAATGCCTTATCAAACT
*
1375079 AGTCATGCAATGCCTTATCAAAAACT
1 AGTCACGCAATGCCTTATC--AAACT
* **
1375105 AGTTACGCAATATCTTATCAAAAACT
1 AGTCACGCAATGCCTTATC--AAACT
*
1375131 AGTCACGCAATGCCTCATCAAAAACT
1 AGTCACGCAATGCCTTATC--AAACT
* *
1375157 AGTCACGCAAT-AC---TCAAAGTT
1 AGTCACGCAATGCCTTATCAAA-CT
* *
1375178 AATAACGCAATGCC-TATC-AACT
1 AGTCACGCAATGCCTTATCAAACT
*
1375200 AGTCACGCAATGCCTTATAAAAAACT
1 AGTCACGCAATGCCTTAT--CAAACT
* **
1375226 AATCACGCAATGTCC--A--AAGTT
1 AGTCACGCAATG-CCTTATCAAACT
* *
1375247 AGTAATGCAATGCC-TATC-AACT
1 AGTCACGCAATGCCTTATCAAACT
1375269 AGTCACGCAATGCCTTATCAGAAACT
1 AGTCACGCAATGCCTTATC--AAACT
* *
1375295 AGT-AGCGCAATACCTTATAAAAAAACT
1 AGTCA-CGCAATGCCTTAT---CAAACT
* *
1375322 AATCACGCAATGCC----CAAAGTT
1 AGTCACGCAATGCCTTATCAAA-CT
* * *
1375343 AGTAATGCAATACC-TATC-AACT
1 AGTCACGCAATGCCTTATCAAACT
*
1375365 AGTCACGCAATACCTTATCAAAAACT
1 AGTCACGCAATGCCTTATC--AAACT
*
1375391 AATCACGCAATGCCTTATAACAAACT
1 AGTCACGCAATGCCTTAT--CAAACT
* *
1375417 AGTTACGCAATGCC--A--AAAGT
1 AGTCACGCAATGCCTTATCAAACT
* * *
1375437 CAGTTACGCAATACC-TAT-TAACT
1 -AGTCACGCAATGCCTTATCAAACT
* *
1375460 AGTCACGTAATACCTTATCAGAAACT
1 AGTCACGCAATGCCTTATC--AAACT
* * * *
1375486 AATAACGTAATGCC----CAAAGTT
1 AGTCACGCAATGCCTTATCAAA-CT
*
1375507 AGTAACGCAATGCC-TATC-AACT
1 AGTCACGCAATGCCTTATCAAACT
*
1375529 AG-CTACACAATGCCTTATCAAAAACT
1 AGTC-ACGCAATGCCTTATC--AAACT
* *
1375555 AGTCACGCAATACTTTATCAAA
1 AGTCACGCAATGCCTTATCAAA
1375577 AATCAGTCAC
Statistics
Matches: 443, Mismatches: 70, Indels: 105
0.72 0.11 0.17
Matches are distributed among these distances:
20 15 0.03
21 60 0.14
22 87 0.20
23 87 0.20
24 8 0.02
25 3 0.01
26 163 0.37
27 18 0.04
28 2 0.00
ACGTcount: A:0.39, C:0.25, G:0.12, T:0.24
Consensus pattern (24 bp):
AGTCACGCAATGCCTTATCAAACT
Found at i:1375210 original size:69 final size:70
Alignment explanation
Indices: 1375127--1375307 Score: 269
Period size: 69 Copynumber: 2.6 Consensus size: 70
1375117 TCTTATCAAA
*
1375127 AACTAGTCACGCAATGCCTCATCAAAAACTAGTCACGCAATACT-CAAAGTTAATAACGCAATGC
1 AACTAGTCACGCAATGCCTTATCAAAAACTAGTCACGCAATACTCCAAAGTTAATAACGCAATGC
1375191 CTATC
66 CTATC
* * * * *
1375196 AACTAGTCACGCAATGCCTTATAAAAAACTAATCACGCAAT-GTCCAAAGTTAGTAATGCAATGC
1 AACTAGTCACGCAATGCCTTATCAAAAACTAGTCACGCAATACTCCAAAGTTAATAACGCAATGC
1375260 CTATC
66 CTATC
*
1375265 AACTAGTCACGCAATGCCTTATCAGAAACTAGT-AGCGCAATAC
1 AACTAGTCACGCAATGCCTTATCAAAAACTAGTCA-CGCAATAC
1375308 CTTATAAAAA
Statistics
Matches: 99, Mismatches: 10, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
68 2 0.02
69 97 0.98
ACGTcount: A:0.39, C:0.25, G:0.13, T:0.23
Consensus pattern (70 bp):
AACTAGTCACGCAATGCCTTATCAAAAACTAGTCACGCAATACTCCAAAGTTAATAACGCAATGC
CTATC
Found at i:1375275 original size:43 final size:43
Alignment explanation
Indices: 1375222--1375375 Score: 128
Period size: 43 Copynumber: 3.3 Consensus size: 43
1375212 CCTTATAAAA
*
1375222 AACTAATCACGCAATGTCCAAAGTTAGTAATGCAATGCCTATC
1 AACTAATCACGCAATGTCCAAAGTTAGTAATGCAATACCTATC
* * ** ** *
1375265 AACTAGTCACGCAATGCCTTATCAGAAACTAGTAGCGCAATACCTTATAAAAA
1 AACTAATCACGCAATG---T-CCA-AAGTTAGTAATGCAATACC-TAT----C
*
1375318 AACTAATCACGCAATGCCCAAAGTTAGTAATGCAATACCTATC
1 AACTAATCACGCAATGTCCAAAGTTAGTAATGCAATACCTATC
*
1375361 AACTAGTCACGCAAT
1 AACTAATCACGCAAT
1375376 ACCTTATCAA
Statistics
Matches: 84, Mismatches: 17, Indels: 20
0.69 0.14 0.17
Matches are distributed among these distances:
43 29 0.35
46 1 0.01
47 5 0.06
48 29 0.35
49 5 0.06
53 15 0.18
ACGTcount: A:0.40, C:0.24, G:0.13, T:0.23
Consensus pattern (43 bp):
AACTAATCACGCAATGTCCAAAGTTAGTAATGCAATACCTATC
Found at i:1375295 original size:95 final size:96
Alignment explanation
Indices: 1375061--1375486 Score: 433
Period size: 95 Copynumber: 4.5 Consensus size: 96
1375051 CTAACAAGTC
* * * * *
1375061 ACGCAATGCCTATCAACTAGTCATGCAATGCCTTATCAAAAACTAGTTACGCAATATCTTATCAA
1 ACGCAATACCTATCAACTAGTCACGCAATGCCTTATCAAAAACTAGTCACGCAATACCTTATAAA
* ** *
1375126 AAACTAGTCACGCAATGCCTCATCAAAAACTAGTC
66 AAACTAATCACGCAATG--TC--CAAAAGTTAGTA
* * * *
1375161 ACGCAATA-C--TCAAAGTTAATAACGCAATGCC-TATC---AACTAGTCACGCAATGCCTTATA
1 ACGCAATACCTATC-AA-CTAGTCACGCAATGCCTTATCAAAAACTAGTCACGCAATACCTTATA
1375219 AAAAACTAATCACGCAATGTCC-AAAGTTAGTA
64 AAAAACTAATCACGCAATGTCCAAAAGTTAGTA
* * *
1375251 ATGCAATGCCTATCAACTAGTCACGCAATGCCTTATCAGAAACTAGT-AGCGCAATACCTTATAA
1 ACGCAATACCTATCAACTAGTCACGCAATGCCTTATCAAAAACTAGTCA-CGCAATACCTTAT-A
*
1375315 AAAAACTAATCACGCAATG-CCCAAAGTTAGTA
64 AAAAACTAATCACGCAATGTCCAAAAGTTAGTA
* * * * *
1375347 ATGCAATACCTATCAACTAGTCACGCAATACCTTATCAAAAACTAATCACGCAATGCCTTATAAC
1 ACGCAATACCTATCAACTAGTCACGCAATGCCTTATCAAAAACTAGTCACGCAATACCTTATAAA
* * * *
1375412 AAACTAGTTACGCAATG-CCAAAAGTCAGTT
66 AAACTAATCACGCAATGTCCAAAAGTTAGTA
* * * *
1375442 ACGCAATACCTATTAACTAGTCACGTAATACCTTATCAGAAACTA
1 ACGCAATACCTATCAACTAGTCACGCAATGCCTTATCAAAAACTA
1375487 ATAACGTAAT
Statistics
Matches: 279, Mismatches: 34, Indels: 31
0.81 0.10 0.09
Matches are distributed among these distances:
90 13 0.05
91 15 0.05
92 6 0.02
93 4 0.01
94 1 0.00
95 126 0.45
96 85 0.30
97 3 0.01
98 6 0.02
99 13 0.05
100 7 0.03
ACGTcount: A:0.40, C:0.25, G:0.12, T:0.24
Consensus pattern (96 bp):
ACGCAATACCTATCAACTAGTCACGCAATGCCTTATCAAAAACTAGTCACGCAATACCTTATAAA
AAACTAATCACGCAATGTCCAAAAGTTAGTA
Found at i:1375460 original size:69 final size:68
Alignment explanation
Indices: 1375369--1375565 Score: 180
Period size: 69 Copynumber: 2.8 Consensus size: 68
1375359 TCAACTAGTC
*
1375369 ACGCAATACCTTATCAAAAACTAATCACGCAATGCCTTATAACAAACTAGTTACGCAATGCCAAA
1 ACGCAATACC-TATC---AACTAATCACGCAATGCCTTATAA-AAACTAGTAACGCAATGCCAAA
*
1375434 AGTCAGTT
61 AGTCAGTA
* * * * * * * * *
1375442 ACGCAATACCTATTAACTAGTCACGTAATACCTTATCAGAAACTAATAACGTAATGCCCAAAGTT
1 ACGCAATACCTATCAACTAATCACGCAATGCCTTAT-AAAAACTAGTAACGCAATGCCAAAAGTC
1375507 AGTA
65 AGTA
* * * *
1375511 ACGCAATGCCTATCAACT-AGCTACACAATGCCTTATCAAAAACTAGTCACGCAAT
1 ACGCAATACCTATCAACTAATC-ACGCAATGCCTTAT-AAAAACTAGTAACGCAAT
1375566 ACTTTATCAA
Statistics
Matches: 100, Mismatches: 22, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
68 1 0.01
69 85 0.85
70 1 0.01
72 3 0.03
73 10 0.10
ACGTcount: A:0.40, C:0.25, G:0.11, T:0.24
Consensus pattern (68 bp):
ACGCAATACCTATCAACTAATCACGCAATGCCTTATAAAAACTAGTAACGCAATGCCAAAAGTCA
GTA
Found at i:1375566 original size:260 final size:260
Alignment explanation
Indices: 1375101--1375578 Score: 685
Period size: 260 Copynumber: 1.8 Consensus size: 260
1375091 CCTTATCAAA
* * *
1375101 AACTAGTTACGCAATATCTTATCAAAAACTAGTCACGCAATGCCTCATCAAAAACTAGTCACGCA
1 AACTAGTCACGCAATACCTTATCAAAAACTAATCACGCAATGCCTCATCAAAAACTAGTCACGCA
* * * *
1375166 ATACTCAAAGTTAATAACGCAATGCCTATCAACTAGTCACGCAATGCCTTATAAAAAACTAATCA
66 ATACTCAAAGTCAATAACGCAATACCTATCAACTAGTCACGCAATACCTTATAAAAAACTAATAA
* * * *
1375231 CGCAATGTCCAAAGTTAGTAATGCAATGCCTATCAACTAGTCACGCAATGCCTTATCAGAAACTA
131 CGCAATGCCCAAAGTTAGTAACGCAATGCCTATCAACTAGTCACACAATGCCTTATCAAAAACTA
1375296 GTAGCGCAATACCTTATAAAAAAACTAATCACGCAATGCCCAAAGTTAGTAATGCAATACCTATC
196 GTAGCGCAATACCTTATAAAAAAACTAATCACGCAATGCCCAAAGTTAGTAATGCAATACCTATC
* *
1375361 AACTAGTCACGCAATACCTTATCAAAAACTAATCACGCAATGCCTTAT-AACAAACTAGTTACGC
1 AACTAGTCACGCAATACCTTATCAAAAACTAATCACGCAATGCCTCATCAA-AAACTAGTCACGC
* * * * * * *
1375425 AATGC-CAAAAGTCAGTTACGCAATACCTATTAACTAGTCACGTAATACCTTATCAGAAACTAAT
65 AATACTC-AAAGTCAATAACGCAATACCTATCAACTAGTCACGCAATACCTTATAAAAAACTAAT
*
1375489 AACGTAATGCCCAAAGTTAGTAACGCAATGCCTATCAACTAG-CTACACAATGCCTTATCAAAAA
129 AACGCAATGCCCAAAGTTAGTAACGCAATGCCTATCAACTAGTC-ACACAATGCCTTATCAAAAA
* *
1375553 CTAGTCA-CGCAATACTTTATCAAAAA
193 CTAGT-AGCGCAATACCTTATAAAAAA
1375579 TCAGTCACAT
Statistics
Matches: 191, Mismatches: 23, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
259 4 0.02
260 186 0.97
261 1 0.01
ACGTcount: A:0.40, C:0.24, G:0.11, T:0.24
Consensus pattern (260 bp):
AACTAGTCACGCAATACCTTATCAAAAACTAATCACGCAATGCCTCATCAAAAACTAGTCACGCA
ATACTCAAAGTCAATAACGCAATACCTATCAACTAGTCACGCAATACCTTATAAAAAACTAATAA
CGCAATGCCCAAAGTTAGTAACGCAATGCCTATCAACTAGTCACACAATGCCTTATCAAAAACTA
GTAGCGCAATACCTTATAAAAAAACTAATCACGCAATGCCCAAAGTTAGTAATGCAATACCTATC
Found at i:1375602 original size:164 final size:165
Alignment explanation
Indices: 1375303--1375614 Score: 427
Period size: 164 Copynumber: 1.9 Consensus size: 165
1375293 CTAGTAGCGC
* *
1375303 AATACCTTATAAAAAAACTAATCACGCAATGCCCAAAGTTAGTAATGCAATACCTATCAACTAGT
1 AATACCTTATAAAAAAACTAATAACGCAATGCCCAAAGTTAGTAACGCAATACCTATCAACTAGT
* * * *
1375368 CACGCAATACCTTATCAAAAACTAATCACGCAATGCCTTATAACAAACTAGTTACGCAATGCCAA
66 CACACAATACCTTATCAAAAACTAATCACGCAATACCTTATAACAAACTAGTCACACAATGCCAA
1375433 AAGTCAGTTACGCAATACCTATTAACTAGTCACGT
131 AAGTCAGTTACGCAATACCTATTAACTAGTCACGT
* * * *
1375468 AATACCTTAT-CAGAAACTAATAACGTAATGCCCAAAGTTAGTAACGCAATGCCTATCAACTAG-
1 AATACCTTATAAAAAAACTAATAACGCAATGCCCAAAGTTAGTAACGCAATACCTATCAACTAGT
* * * *
1375531 CTACACAATGCCTTATCAAAAACTAGTCACGCAATACTTTATCAA-AAA-TCAGTCACATAATGT
66 C-ACACAATACCTTATCAAAAACTAATCACGCAATACCTTAT-AACAAACT-AGTCACACAATG-
1375594 CC-AAAGTCAGTTACGCAATAC
127 CCAAAAGTCAGTTACGCAATAC
1375615 TTAAAAACTA
Statistics
Matches: 129, Mismatches: 14, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
163 2 0.02
164 113 0.88
165 14 0.11
ACGTcount: A:0.41, C:0.24, G:0.11, T:0.24
Consensus pattern (165 bp):
AATACCTTATAAAAAAACTAATAACGCAATGCCCAAAGTTAGTAACGCAATACCTATCAACTAGT
CACACAATACCTTATCAAAAACTAATCACGCAATACCTTATAACAAACTAGTCACACAATGCCAA
AAGTCAGTTACGCAATACCTATTAACTAGTCACGT
Found at i:1375624 original size:95 final size:95
Alignment explanation
Indices: 1375456--1375630 Score: 208
Period size: 95 Copynumber: 1.8 Consensus size: 95
1375446 AATACCTATT
* * * * *
1375456 AACTAGTCACGTAATACCTTATCAGAAACTAATAACGTAATGCCCAAAGTTAGTAACGCAATGCC
1 AACTAGTCACGCAATACCTTATCAAAAACTAATAACATAATGCCCAAAGTCAGTAACGCAATACC
**
1375521 TATCAACTAGCTACACAATGCCTTATCAAA
66 TAAAAACTAGCTACACAATGCCTTATCAAA
* * * * *
1375551 AACTAGTCACGCAATACTTTATCAAAAA-TCAGTCACATAATGTCCAAAGTCAGTTACGCAATAC
1 AACTAGTCACGCAATACCTTATCAAAAACT-AATAACATAATGCCCAAAGTCAGTAACGCAATAC
* *
1375615 TTAAAAACTAGTTACA
65 CTAAAAACTAGCTACA
1375631 TAATTCCCAA
Statistics
Matches: 65, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
94 1 0.02
95 64 0.98
ACGTcount: A:0.41, C:0.23, G:0.11, T:0.25
Consensus pattern (95 bp):
AACTAGTCACGCAATACCTTATCAAAAACTAATAACATAATGCCCAAAGTCAGTAACGCAATACC
TAAAAACTAGCTACACAATGCCTTATCAAA
Found at i:1411555 original size:30 final size:30
Alignment explanation
Indices: 1411520--1411578 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
1411510 ATCTATTTAC
* * *
1411520 TTTTATTTTGAATTAAATAAATTTTTATAT
1 TTTTATTTTCAATCAAATAAACTTTTATAT
*
1411550 TTTTATTTTCAGTCAAATAAACTTTTATA
1 TTTTATTTTCAATCAAATAAACTTTTATA
1411579 ACTAATGGTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.36, C:0.05, G:0.03, T:0.56
Consensus pattern (30 bp):
TTTTATTTTCAATCAAATAAACTTTTATAT
Found at i:1415623 original size:6 final size:6
Alignment explanation
Indices: 1415598--1415653 Score: 60
Period size: 6 Copynumber: 9.3 Consensus size: 6
1415588 AACATTAATT
* * * *
1415598 TTTTTAA TTTATA TTATTA TTTTTA TTTTTA -TTTAA TTATTA TTTTTA
1 TTTTT-A TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
1415646 TTTTTA TT
1 TTTTTA TT
1415654 CTATTTGTTC
Statistics
Matches: 40, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
5 4 0.10
6 32 0.80
7 4 0.10
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (6 bp):
TTTTTA
Found at i:1415632 original size:29 final size:28
Alignment explanation
Indices: 1415596--1415653 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 28
1415586 TCAACATTAA
1415596 TTTTTTTAATT-TATATTATTATTTTTAT
1 TTTTTTTAATTAT-TATTATTATTTTTAT
*
1415624 TTTTATTTAATTATTATTTTTATTTTTAT
1 TTTT-TTTAATTATTATTATTATTTTTAT
1415653 T
1 T
1415654 CTATTTGTTC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
28 4 0.15
29 22 0.81
30 1 0.04
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (28 bp):
TTTTTTTAATTATTATTATTATTTTTAT
Found at i:1415640 original size:23 final size:24
Alignment explanation
Indices: 1415598--1415653 Score: 96
Period size: 23 Copynumber: 2.3 Consensus size: 24
1415588 AACATTAATT
1415598 TTTTTAATTTATATTATTATTTTTA
1 TTTTT-ATTTATATTATTATTTTTA
1415623 TTTTTATTTA-ATTATTATTTTTA
1 TTTTTATTTATATTATTATTTTTA
1415646 TTTTTATT
1 TTTTTATT
1415654 CTATTTGTTC
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
23 21 0.68
24 5 0.16
25 5 0.16
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (24 bp):
TTTTTATTTATATTATTATTTTTA
Found at i:1415659 original size:17 final size:16
Alignment explanation
Indices: 1415614--1415653 Score: 55
Period size: 17 Copynumber: 2.5 Consensus size: 16
1415604 ATTTATATTA
*
1415614 TTATTTTTATTTTTAT
1 TTATTATTATTTTTAT
1415630 TTAATTATTATTTTTAT
1 TT-ATTATTATTTTTAT
1415647 TT-TTATT
1 TTATTATT
1415654 CTATTTGTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 5 0.23
16 2 0.09
17 15 0.68
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.78
Consensus pattern (16 bp):
TTATTATTATTTTTAT
Found at i:1415670 original size:10 final size:10
Alignment explanation
Indices: 1415655--1415679 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
1415645 ATTTTTATTC
1415655 TATTTGTTCA
1 TATTTGTTCA
1415665 TATTTGTTCA
1 TATTTGTTCA
1415675 TATTT
1 TATTT
1415680 TTTATTTATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.20, C:0.08, G:0.08, T:0.64
Consensus pattern (10 bp):
TATTTGTTCA
Found at i:1423495 original size:50 final size:50
Alignment explanation
Indices: 1423414--1423514 Score: 175
Period size: 50 Copynumber: 2.0 Consensus size: 50
1423404 AATGCAACGT
1423414 CTGAAGACTCGCCACGCATAACGAAAAGCGGGAATCTTAACTTCAACTAG
1 CTGAAGACTCGCCACGCATAACGAAAAGCGGGAATCTTAACTTCAACTAG
* * *
1423464 CTGAAGAGTCGCCACGCATAAGGAAATGCGGGAATCTTAACTTCAACTAG
1 CTGAAGACTCGCCACGCATAACGAAAAGCGGGAATCTTAACTTCAACTAG
1423514 C
1 C
1423515 ATCTTTGTAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.35, C:0.25, G:0.22, T:0.19
Consensus pattern (50 bp):
CTGAAGACTCGCCACGCATAACGAAAAGCGGGAATCTTAACTTCAACTAG
Found at i:1423771 original size:2 final size:2
Alignment explanation
Indices: 1423764--1423810 Score: 73
Period size: 2 Copynumber: 25.0 Consensus size: 2
1423754 ATATAATTTG
1423764 AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT A- AT AT A- AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1423803 AT AT AT AT
1 AT AT AT AT
1423811 TGATTATTCT
Statistics
Matches: 42, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
1 3 0.07
2 39 0.93
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:1432435 original size:26 final size:24
Alignment explanation
Indices: 1432414--1432461 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
1432404 TCAAATTCTC
*
1432414 TTTTAA-TTTTAACATGATAAATGTT
1 TTTTAATTTTTAAC-TAATAAAT-TT
1432439 TTTTAATTTTTAACTAATAAATT
1 TTTTAATTTTTAACTAATAAATT
1432462 AATGTGAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 1 0.05
25 13 0.62
26 7 0.33
ACGTcount: A:0.38, C:0.04, G:0.04, T:0.54
Consensus pattern (24 bp):
TTTTAATTTTTAACTAATAAATTT
Found at i:1434980 original size:22 final size:22
Alignment explanation
Indices: 1434955--1434998 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
1434945 TTAACAAGTT
1434955 AAATAATATATTATTCATAGTC
1 AAATAATATATTATTCATAGTC
1434977 AAATAATATATTATTCATAGTC
1 AAATAATATATTATTCATAGTC
1434999 TTATGACAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.45, C:0.09, G:0.05, T:0.41
Consensus pattern (22 bp):
AAATAATATATTATTCATAGTC
Found at i:1437664 original size:16 final size:17
Alignment explanation
Indices: 1437627--1437666 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
1437617 GAATAAATTA
1437627 ATTT-ATTTATGATACT
1 ATTTAATTTATGATACT
1437643 ATTTTAATTT-TGATACT
1 A-TTTAATTTATGATACT
1437660 ATTTAAT
1 ATTTAAT
1437667 ATTTAATTGG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 7 0.32
17 11 0.50
18 4 0.18
ACGTcount: A:0.33, C:0.05, G:0.05, T:0.57
Consensus pattern (17 bp):
ATTTAATTTATGATACT
Found at i:1439846 original size:33 final size:32
Alignment explanation
Indices: 1439809--1439879 Score: 97
Period size: 33 Copynumber: 2.2 Consensus size: 32
1439799 TTTAATGTCA
*
1439809 TATATTTTATTTTCATTTCTTATTATAATCTTC
1 TATATTTTATTTTCATTTCTTAATATAAT-TTC
* * *
1439842 TATATTTTATTTTTATTTTTTAATATAATTTT
1 TATATTTTATTTTCATTTCTTAATATAATTTC
1439874 TATATT
1 TATATT
1439880 ATATATTATA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 8 0.24
33 26 0.76
ACGTcount: A:0.27, C:0.06, G:0.00, T:0.68
Consensus pattern (32 bp):
TATATTTTATTTTCATTTCTTAATATAATTTC
Found at i:1440119 original size:24 final size:25
Alignment explanation
Indices: 1440084--1440130 Score: 71
Period size: 24 Copynumber: 1.9 Consensus size: 25
1440074 TTGTATTGGT
1440084 TTTGAATTGTAATTAT-ATTACATCC
1 TTTGAATTGTAA-TATGATTACATCC
1440109 TTTG-ATTGTAATATGATTACAT
1 TTTGAATTGTAATATGATTACAT
1440131 TACAGTGTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 3 0.14
24 14 0.67
25 4 0.19
ACGTcount: A:0.32, C:0.09, G:0.11, T:0.49
Consensus pattern (25 bp):
TTTGAATTGTAATATGATTACATCC
Found at i:1444770 original size:21 final size:22
Alignment explanation
Indices: 1444733--1444775 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
1444723 TTTTTCATGC
1444733 AAAAGAAGAAACAAACAAAATA
1 AAAAGAAGAAACAAACAAAATA
*
1444755 AAAAGGAGAAAC-AACAAAATA
1 AAAAGAAGAAACAAACAAAATA
1444776 TATAAAATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.74, C:0.09, G:0.12, T:0.05
Consensus pattern (22 bp):
AAAAGAAGAAACAAACAAAATA
Found at i:1445373 original size:2 final size:2
Alignment explanation
Indices: 1445362--1445431 Score: 90
Period size: 2 Copynumber: 36.0 Consensus size: 2
1445352 GGCAAGAGGG
* * * *
1445362 TA TA -A TA TA TA TA AA TA TA AA TA TA TA AA TA TA TA AA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1445403 TA TA TA TA TA -A TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1445432 AGTATATGTA
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
1 2 0.03
2 56 0.97
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (2 bp):
TA
Found at i:1446100 original size:2 final size:2
Alignment explanation
Indices: 1446093--1446140 Score: 82
Period size: 2 Copynumber: 25.0 Consensus size: 2
1446083 TTATGTTAAT
1446093 TA TA TA TA TA TA -A T- TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1446133 TA TA TA TA
1 TA TA TA TA
1446141 ATAAATTAAG
Statistics
Matches: 44, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
1 2 0.05
2 42 0.95
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:1451720 original size:25 final size:25
Alignment explanation
Indices: 1451686--1451740 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
1451676 AATCAAATTT
*
1451686 TATTAAATATTTTAATAA-AATATAA
1 TATTAAATATTTCAATAATAA-ATAA
* *
1451711 TATTTAATATTTCATTAATAAATAA
1 TATTAAATATTTCAATAATAAATAA
1451736 TATTA
1 TATTA
1451741 TGAAAAAAAC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
25 23 0.92
26 2 0.08
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (25 bp):
TATTAAATATTTCAATAATAAATAA
Found at i:1451908 original size:2 final size:2
Alignment explanation
Indices: 1451901--1451953 Score: 78
Period size: 2 Copynumber: 28.5 Consensus size: 2
1451891 TGTTCTTAAT
1451901 TA TA TA TA TA TA TA T- TA TA T- TA TA TA -A TA TA T- TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1451939 TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA T
1451954 GTGTGTGTGT
Statistics
Matches: 47, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
1 4 0.09
2 43 0.91
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:1453815 original size:17 final size:17
Alignment explanation
Indices: 1453793--1453827 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
1453783 TCTCAATCTA
1453793 ATCGTTTATATTGATAG
1 ATCGTTTATATTGATAG
1453810 ATCGTTTATATTGATAG
1 ATCGTTTATATTGATAG
1453827 A
1 A
1453828 GAGAAGGAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.31, C:0.06, G:0.17, T:0.46
Consensus pattern (17 bp):
ATCGTTTATATTGATAG
Found at i:1459927 original size:74 final size:75
Alignment explanation
Indices: 1459841--1460001 Score: 193
Period size: 76 Copynumber: 2.2 Consensus size: 75
1459831 ATGTGTCTCT
* ** *
1459841 TTTTTATTTTTTAAGTTTTTAAATG-TTAAAT-AAA-AATATTTTCATTATTAATCAATTCAGTT
1 TTTTTATATTTTAAGTTGATAAA-GATTAAATAAAACAATATTTTCATTATTAATCAATTCAATT
*
1459903 AGATTGTGATA
65 AGATTATGATA
* * * *
1459914 TTATTTATATTTTAAGTTGATAAAGATTGAATAAAACAATATTTTCATTATTATTTAATTTAATT
1 TT-TTTATATTTTAAGTTGATAAAGATTAAATAAAACAATATTTTCATTATTAATCAATTCAATT
1459979 AGATTATGATA
65 AGATTATGATA
*
1459990 TTTTTAGATTTT
1 TTTTTATATTTT
1460002 TTTTAGAGTA
Statistics
Matches: 74, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
73 3 0.04
74 23 0.31
75 12 0.16
76 36 0.49
ACGTcount: A:0.37, C:0.03, G:0.08, T:0.52
Consensus pattern (75 bp):
TTTTTATATTTTAAGTTGATAAAGATTAAATAAAACAATATTTTCATTATTAATCAATTCAATTA
GATTATGATA
Found at i:1461581 original size:21 final size:21
Alignment explanation
Indices: 1461555--1461599 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
1461545 TTATAGAAAG
*
1461555 AAAGAAAAAAGTAACA-AAGAA
1 AAAGAAAAAAG-AAAAGAAGAA
*
1461576 AAAGAAAGAAGAAAAGAAGAA
1 AAAGAAAAAAGAAAAGAAGAA
1461597 AAA
1 AAA
1461600 AAATTCAAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 3 0.14
21 18 0.86
ACGTcount: A:0.78, C:0.02, G:0.18, T:0.02
Consensus pattern (21 bp):
AAAGAAAAAAGAAAAGAAGAA
Found at i:1461602 original size:25 final size:25
Alignment explanation
Indices: 1461551--1461602 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
1461541 AGTTTTATAG
*
1461551 AAAGAAAGAAAAAAGTAACAAAGAA
1 AAAGAAAGAAAAAAGTAACAAAAAA
*
1461576 AAAGAAAGAAGAAAAG-AAGAAAAAA
1 AAAGAAAGAA-AAAAGTAACAAAAAA
1461601 AA
1 AA
1461603 TTCAAGTAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 19 0.79
26 5 0.21
ACGTcount: A:0.79, C:0.02, G:0.17, T:0.02
Consensus pattern (25 bp):
AAAGAAAGAAAAAAGTAACAAAAAA
Found at i:1472453 original size:26 final size:27
Alignment explanation
Indices: 1472413--1472468 Score: 87
Period size: 26 Copynumber: 2.1 Consensus size: 27
1472403 CAGCAAATAA
* *
1472413 TTTGGTGCAAATCTCAATATGAGTTTC
1 TTTGGTGCAAATCTCAATACGAGTTGC
1472440 TTTGGTG-AAATCTCAATACGAGTTGC
1 TTTGGTGCAAATCTCAATACGAGTTGC
1472466 TTT
1 TTT
1472469 AGTGGACATG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 20 0.74
27 7 0.26
ACGTcount: A:0.25, C:0.14, G:0.20, T:0.41
Consensus pattern (27 bp):
TTTGGTGCAAATCTCAATACGAGTTGC
Found at i:1479780 original size:123 final size:122
Alignment explanation
Indices: 1479561--1479805 Score: 481
Period size: 123 Copynumber: 2.0 Consensus size: 122
1479551 TAAAACTTGA
1479561 TGAGTATTTCGATTATATAAAATTTCTTTTAGATTCAGCGCCGCCTGCATTAATAACCACAGTGA
1 TGAGTATTTCGATTATATAAAATTTCTTTTAGATTCAGCGCCGCCTGCATTAATAACCACAGTGA
1479626 CCTCCTTTGTGGGCAACCAGGGTACTCGTTCCAGGATGTTTTACCTCCTTTTAGAGG
66 CCTCCTTTGTGGGCAACCAGGGTACTCGTTCCAGGATGTTTTACCTCCTTTTAGAGG
1479683 NTGAGTATTTCGATTATATAAAATTTCTTTTAGATTCAGCGCCGCCTGCATTAATAACCACAGTG
1 -TGAGTATTTCGATTATATAAAATTTCTTTTAGATTCAGCGCCGCCTGCATTAATAACCACAGTG
1479748 ACCTCCTTTGTGGGCAACCAGGGTACTCGTTCCAGGATGTTTTACCTCCTTTTAGAGG
65 ACCTCCTTTGTGGGCAACCAGGGTACTCGTTCCAGGATGTTTTACCTCCTTTTAGAGG
1479806 GAGATATGGC
Statistics
Matches: 122, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
123 122 1.00
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (122 bp):
TGAGTATTTCGATTATATAAAATTTCTTTTAGATTCAGCGCCGCCTGCATTAATAACCACAGTGA
CCTCCTTTGTGGGCAACCAGGGTACTCGTTCCAGGATGTTTTACCTCCTTTTAGAGG
Found at i:1481322 original size:29 final size:29
Alignment explanation
Indices: 1481280--1481340 Score: 122
Period size: 29 Copynumber: 2.1 Consensus size: 29
1481270 AGCCGCATGG
1481280 AAGTCAAGCATGAAAGTAGTAATAGTAGT
1 AAGTCAAGCATGAAAGTAGTAATAGTAGT
1481309 AAGTCAAGCATGAAAGTAGTAATAGTAGT
1 AAGTCAAGCATGAAAGTAGTAATAGTAGT
1481338 AAG
1 AAG
1481341 GGTGGCTATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.46, C:0.07, G:0.25, T:0.23
Consensus pattern (29 bp):
AAGTCAAGCATGAAAGTAGTAATAGTAGT
Found at i:1482565 original size:23 final size:24
Alignment explanation
Indices: 1482537--1482581 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
1482527 TGAGAAAATG
1482537 ATTAAAAAATTA-TACCTAATTAA
1 ATTAAAAAATTATTACCTAATTAA
* *
1482560 ATTAAAATATTATTACTTAATT
1 ATTAAAAAATTATTACCTAATT
1482582 TTTTATACCC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 11 0.58
24 8 0.42
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.42
Consensus pattern (24 bp):
ATTAAAAAATTATTACCTAATTAA
Found at i:1488421 original size:3 final size:3
Alignment explanation
Indices: 1488413--1488536 Score: 203
Period size: 3 Copynumber: 41.3 Consensus size: 3
1488403 CTTATACCAC
*
1488413 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATA ATG ATG ATG ATG ATG ATG
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
* * *
1488461 ATA ATG ATG ATA ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATA ATG
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
*
1488509 ATG ATG ATA ATG ATG ATG ATG ATG ATG A
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG A
1488537 AGAAGAAACC
Statistics
Matches: 111, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 111 1.00
ACGTcount: A:0.38, C:0.00, G:0.29, T:0.33
Consensus pattern (3 bp):
ATG
Found at i:1491016 original size:24 final size:24
Alignment explanation
Indices: 1490971--1491017 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
1490961 ATGAGAAAAT
1490971 AATTAATAAAATTATACCTAATTA
1 AATTAATAAAATTATACCTAATTA
* *
1490995 AATTAA-AATATTATTACTTAATT
1 AATTAATAAAATTA-TACCTAATT
1491018 TTTTATACCC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 6 0.30
24 14 0.70
ACGTcount: A:0.51, C:0.06, G:0.00, T:0.43
Consensus pattern (24 bp):
AATTAATAAAATTATACCTAATTA
Found at i:1493032 original size:20 final size:19
Alignment explanation
Indices: 1492997--1493040 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
1492987 GAGGCCATAG
*
1492997 GAAA-AAAAAGAGAAAAAA
1 GAAAGAAAAAGAAAAAAAA
1493015 GAAAGAAAAAGAAAAAAACA
1 GAAAGAAAAAGAAAAAAA-A
1493035 GAAAGA
1 GAAAGA
1493041 GACCGTGTGC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 4 0.17
19 12 0.52
20 7 0.30
ACGTcount: A:0.80, C:0.02, G:0.18, T:0.00
Consensus pattern (19 bp):
GAAAGAAAAAGAAAAAAAA
Found at i:1503781 original size:2 final size:2
Alignment explanation
Indices: 1503774--1504006 Score: 351
Period size: 2 Copynumber: 114.5 Consensus size: 2
1503764 GCAGTGGGGA
* *
1503774 AG AG AG AG AG AG AG AG AG AG AG AC AG AG AG AG AC AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
* *
1503816 AG AG AG AG AG AG AG A- AG AG AG AG AG AC AG AG AG AG AG AC AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
* * *
1503857 AG AG AG AG AC AG AG AG AG AG AG AC AG AG AG AG AG AG AC AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1503899 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1503941 AG AG AG AG AG AG AG AG AG AG ACG ACG AG ACG AG ACG AG AG NAG AG
1 AG AG AG AG AG AG AG AG AG AG A-G A-G AG A-G AG A-G AG AG -AG AG
1503986 AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG A
1504007 ATGATTCTTA
Statistics
Matches: 212, Mismatches: 14, Indels: 10
0.90 0.06 0.04
Matches are distributed among these distances:
1 1 0.00
2 200 0.94
3 11 0.05
ACGTcount: A:0.49, C:0.05, G:0.45, T:0.00
Consensus pattern (2 bp):
AG
Found at i:1533136 original size:21 final size:18
Alignment explanation
Indices: 1533104--1533143 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 18
1533094 TTATACTTAA
1533104 AAAAAATTTAAATTATTTT
1 AAAAAATTTAAATT-TTTT
1533123 AAAAAATTAATAAATTTTTT
1 AAAAAATT--TAAATTTTTT
1533143 A
1 A
1533144 TTATATTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 8 0.42
20 5 0.26
21 6 0.32
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
AAAAAATTTAAATTTTTT
Found at i:1533215 original size:21 final size:20
Alignment explanation
Indices: 1533191--1533234 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
1533181 AAAAATAAAA
*
1533191 ATATTAAATAATCATATTATT
1 ATATTAAATAATCAT-TCATT
* *
1533212 ATATTATATTATCATTCATT
1 ATATTAAATAATCATTCATT
1533232 ATA
1 ATA
1533235 ATATAATCGT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (20 bp):
ATATTAAATAATCATTCATT
Found at i:1534263 original size:2 final size:2
Alignment explanation
Indices: 1534256--1534298 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
1534246 TTAGGAAGTA
1534256 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1534298 A
1 A
1534299 GTTTTAGGTA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:1541047 original size:23 final size:23
Alignment explanation
Indices: 1541021--1541067 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
1541011 ACATCATATG
1541021 TTATGTAGACAGAAAATATCAAT
1 TTATGTAGACAGAAAATATCAAT
*
1541044 TTATGTCGACAGAAAATATCAAT
1 TTATGTAGACAGAAAATATCAAT
1541067 T
1 T
1541068 GACTTCGAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.45, C:0.11, G:0.13, T:0.32
Consensus pattern (23 bp):
TTATGTAGACAGAAAATATCAAT
Found at i:1542311 original size:2 final size:2
Alignment explanation
Indices: 1542304--1542331 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
1542294 TAGAAACAGC
1542304 GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1542332 CCTCATCGAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:1545585 original size:19 final size:19
Alignment explanation
Indices: 1545561--1545598 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
1545551 TTAAATTACA
1545561 GAACCG-AACCAAACACTTC
1 GAACCGTAACCAAAC-CTTC
*
1545580 GAACCGTACCCAAACCTTC
1 GAACCGTAACCAAACCTTC
1545599 ACTTTCCTAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.37, C:0.39, G:0.11, T:0.13
Consensus pattern (19 bp):
GAACCGTAACCAAACCTTC
Found at i:1560386 original size:42 final size:42
Alignment explanation
Indices: 1560339--1560425 Score: 156
Period size: 42 Copynumber: 2.1 Consensus size: 42
1560329 ATCTACTTAT
*
1560339 AAAGAGGATCATTAGGGTCATTGGCTGCAATCTAAACCAATC
1 AAAGAGGATCATCAGGGTCATTGGCTGCAATCTAAACCAATC
*
1560381 AAAGAGGATCATCAGGGTCATTGGCTGCAATCTAAGCCAATC
1 AAAGAGGATCATCAGGGTCATTGGCTGCAATCTAAACCAATC
1560423 AAA
1 AAA
1560426 ACCTCTTTCT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (42 bp):
AAAGAGGATCATCAGGGTCATTGGCTGCAATCTAAACCAATC
Found at i:1572694 original size:2 final size:2
Alignment explanation
Indices: 1572644--1572675 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
1572634 ACACAAAACC
1572644 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1572676 TCCATGGTGN
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:1572696 original size:2 final size:2
Alignment explanation
Indices: 1572689--1572715 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
1572679 ATGGTGNAAC
1572689 CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT C
1572716 GTCCATGGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:1572704 original size:41 final size:40
Alignment explanation
Indices: 1572648--1572728 Score: 144
Period size: 41 Copynumber: 2.0 Consensus size: 40
1572638 AAAACCCTCT
*
1572648 CTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCATGGTGNAAC
1 CTCTCTCTCTCTCTCTCTCTCTCTCTCGTCCATGGTG-AAC
1572689 CTCTCTCTCTCTCTCTCTCTCTCTCTCGTCCATGGTGAAC
1 CTCTCTCTCTCTCTCTCTCTCTCTCTCGTCCATGGTGAAC
1572729 ATAGATCCCA
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
40 3 0.08
41 36 0.92
ACGTcount: A:0.07, C:0.42, G:0.09, T:0.41
Consensus pattern (40 bp):
CTCTCTCTCTCTCTCTCTCTCTCTCTCGTCCATGGTGAAC
Found at i:1581419 original size:14 final size:14
Alignment explanation
Indices: 1581400--1581427 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
1581390 AATACAAACA
1581400 GGGTTGATGAAAAG
1 GGGTTGATGAAAAG
1581414 GGGTTGATGAAAAG
1 GGGTTGATGAAAAG
1581428 ATTACAGATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.00, G:0.43, T:0.21
Consensus pattern (14 bp):
GGGTTGATGAAAAG
Found at i:1583961 original size:22 final size:23
Alignment explanation
Indices: 1583936--1583982 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
1583926 ATTTTTACTT
1583936 TTTATGTTA-AAAATAA-TAAATA
1 TTTATGTTATAAAA-AATTAAATA
*
1583958 TTTATTTTATAAAAAATTAAATA
1 TTTATGTTATAAAAAATTAAATA
1583981 TT
1 TT
1583983 AAATATCAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 10 0.45
23 12 0.55
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (23 bp):
TTTATGTTATAAAAAATTAAATA
Found at i:1586780 original size:16 final size:16
Alignment explanation
Indices: 1586750--1586793 Score: 65
Period size: 14 Copynumber: 2.8 Consensus size: 16
1586740 TTTATTATTA
1586750 TTTTATTTTTT--ATC
1 TTTTATTTTTTAAATC
1586764 TTTTATTTTTTAAATC
1 TTTTATTTTTTAAATC
1586780 TTTTAATTTTTTAA
1 TTTT-ATTTTTTAA
1586794 TTCAAATGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
14 11 0.41
16 7 0.26
17 9 0.33
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.73
Consensus pattern (16 bp):
TTTTATTTTTTAAATC
Found at i:1587339 original size:21 final size:22
Alignment explanation
Indices: 1587290--1587360 Score: 72
Period size: 23 Copynumber: 3.2 Consensus size: 22
1587280 AACTAATTTG
**
1587290 ATATTTAATTAATTTCATTTTTT
1 ATATTTAATTAATTT-ATTTTAA
* *
1587313 ACATTTCATTAATTT-TTTTAA
1 ATATTTAATTAATTTATTTTAA
*
1587334 ATATTTAATTTATTTAATTTTAA
1 ATATTTAATTAATTT-ATTTTAA
1587357 ATAT
1 ATAT
1587361 AACAAATCGA
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
21 16 0.41
23 23 0.59
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (22 bp):
ATATTTAATTAATTTATTTTAA
Found at i:1587730 original size:22 final size:24
Alignment explanation
Indices: 1587697--1587749 Score: 74
Period size: 23 Copynumber: 2.3 Consensus size: 24
1587687 TTTTGTTTTT
1587697 ATTTTTTAATTTAAAAATAAA-TA
1 ATTTTTTAATTTAAAAATAAATTA
**
1587720 ATTTTTT-ATTTTTAAATAAATTA
1 ATTTTTTAATTTAAAAATAAATTA
1587743 ATTTTTT
1 ATTTTTT
1587750 TCTTCTTGGA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
22 11 0.41
23 16 0.59
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (24 bp):
ATTTTTTAATTTAAAAATAAATTA
Found at i:1591521 original size:20 final size:20
Alignment explanation
Indices: 1591496--1591538 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
1591486 TTTCTCTTTC
*
1591496 TTTCTTCTTTTTTGCTTT-GT
1 TTTCTTCTATTTTG-TTTGGT
1591516 TTTCTTCTATTTTGTTTGGT
1 TTTCTTCTATTTTGTTTGGT
1591536 TTT
1 TTT
1591539 GGTACTGTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 3 0.14
20 18 0.86
ACGTcount: A:0.02, C:0.12, G:0.12, T:0.74
Consensus pattern (20 bp):
TTTCTTCTATTTTGTTTGGT
Found at i:1598703 original size:15 final size:16
Alignment explanation
Indices: 1598683--1598720 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
1598673 GTTTTGAATT
*
1598683 TTTTTTTGT-GATTAA
1 TTTTTTTGTAAATTAA
*
1598698 TTTTTTTGTAAATTTA
1 TTTTTTTGTAAATTAA
1598714 TTTTTTT
1 TTTTTTT
1598721 ATACTCTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 9 0.45
16 11 0.55
ACGTcount: A:0.18, C:0.00, G:0.08, T:0.74
Consensus pattern (16 bp):
TTTTTTTGTAAATTAA
Found at i:1599484 original size:9 final size:9
Alignment explanation
Indices: 1599470--1599513 Score: 52
Period size: 9 Copynumber: 4.9 Consensus size: 9
1599460 AGGACAAGGA
1599470 GGGTGAGGT
1 GGGTGAGGT
1599479 GGGTGAGGT
1 GGGTGAGGT
* *
1599488 GGATGAGGA
1 GGGTGAGGT
* *
1599497 GGATGAGGC
1 GGGTGAGGT
1599506 GGGTGAGG
1 GGGTGAGG
1599514 AGGGAATGGT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 31 1.00
ACGTcount: A:0.18, C:0.02, G:0.64, T:0.16
Consensus pattern (9 bp):
GGGTGAGGT
Found at i:1611365 original size:36 final size:36
Alignment explanation
Indices: 1611307--1611376 Score: 113
Period size: 36 Copynumber: 1.9 Consensus size: 36
1611297 GGATAACAAA
1611307 GTTAGCCCATAGGGCATATGGCACTTAATTAGATTT
1 GTTAGCCCATAGGGCATATGGCACTTAATTAGATTT
* * *
1611343 GTTATCCCATAGGGCCTTTGGCACTTAATTAGAT
1 GTTAGCCCATAGGGCATATGGCACTTAATTAGAT
1611377 ATGGCATATG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (36 bp):
GTTAGCCCATAGGGCATATGGCACTTAATTAGATTT
Found at i:1612924 original size:20 final size:19
Alignment explanation
Indices: 1612883--1612926 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
1612873 TTTTAGATTT
* *
1612883 TTATGTTAATTTTGTTTAA
1 TTATGTAAATTTTGATTAA
*
1612902 TTATGTAAAGTTTTGATTGA
1 TTATGTAAA-TTTTGATTAA
1612922 TTATG
1 TTATG
1612927 GCTAATTAAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.27, C:0.00, G:0.16, T:0.57
Consensus pattern (19 bp):
TTATGTAAATTTTGATTAA
Found at i:1621488 original size:21 final size:20
Alignment explanation
Indices: 1621464--1621502 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
1621454 TATAATTATA
1621464 AGAACAAAAAAAAAATGATAT
1 AGAAC-AAAAAAAAATGATAT
**
1621485 AGAACCCAAAAAAATGAT
1 AGAACAAAAAAAAATGAT
1621503 CTTCTAACTC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.67, C:0.10, G:0.10, T:0.13
Consensus pattern (20 bp):
AGAACAAAAAAAAATGATAT
Found at i:1628534 original size:23 final size:23
Alignment explanation
Indices: 1628508--1628551 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
1628498 TTTATATTTA
*
1628508 TATAATATTTTAATATATAAAAT
1 TATAATATTATAATATATAAAAT
*
1628531 TATAATATTATATTATATAAA
1 TATAATATTATAATATATAAA
1628552 TATATCACAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (23 bp):
TATAATATTATAATATATAAAAT
Found at i:1628600 original size:16 final size:16
Alignment explanation
Indices: 1628579--1628613 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
1628569 TATTATTTTC
*
1628579 TATTAACAACATATCG
1 TATTAACAACATATAG
*
1628595 TATTAACATCATATAG
1 TATTAACAACATATAG
1628611 TAT
1 TAT
1628614 AAAAATTATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.43, C:0.14, G:0.06, T:0.37
Consensus pattern (16 bp):
TATTAACAACATATAG
Found at i:1633792 original size:8 final size:9
Alignment explanation
Indices: 1633765--1633790 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
1633755 CAAGATTTAC
1633765 TATTAAAAA
1 TATTAAAAA
1633774 TATTAAAAA
1 TATTAAAAA
1633783 TATTAAAA
1 TATTAAAA
1633791 TACTTTATTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (9 bp):
TATTAAAAA
Done.