Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21614486
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 1093914 characters in sequence are not A, C, G, or T
File 31 of 54
Found at i:12775222 original size:45 final size:46
Alignment explanation
Indices: 12775166--12775256 Score: 132
Period size: 45 Copynumber: 2.0 Consensus size: 46
12775156 AAAGAAATCA
* *
12775166 AAACTTAAACTACT-TTCCATCTTCACAAA-ATTACCTTCTATAATT
1 AAACCTAAACTACTCTTCC-TCTTCAAAAATATTACCTTCTATAATT
*
12775211 AAACCTAAACTACTCTTCCTCTTCAAAAATATTACTTTCTATAATT
1 AAACCTAAACTACTCTTCCTCTTCAAAAATATTACCTTCTATAATT
12775257 TAATTTCCTT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
45 22 0.54
46 19 0.46
ACGTcount: A:0.37, C:0.24, G:0.00, T:0.38
Consensus pattern (46 bp):
AAACCTAAACTACTCTTCCTCTTCAAAAATATTACCTTCTATAATT
Found at i:12776934 original size:17 final size:18
Alignment explanation
Indices: 12776903--12776940 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
12776893 NNNNNNNNNN
*
12776903 TTTATGTATTTTTATATT
1 TTTATGTATTATTATATT
12776921 TTTAT-TATTATTATATT
1 TTTATGTATTATTATATT
12776938 TTT
1 TTT
12776941 TCATAAGCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 14 0.74
18 5 0.26
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (18 bp):
TTTATGTATTATTATATT
Found at i:12777099 original size:13 final size:12
Alignment explanation
Indices: 12777081--12777113 Score: 57
Period size: 13 Copynumber: 2.7 Consensus size: 12
12777071 TTTAAATTAG
12777081 TTATTTTTTTATT
1 TTATTTTTTTA-T
12777094 TTATTTTTTTAT
1 TTATTTTTTTAT
12777106 TTATTTTT
1 TTATTTTT
12777114 ATTTTTTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (12 bp):
TTATTTTTTTAT
Found at i:12777108 original size:17 final size:18
Alignment explanation
Indices: 12777084--12777122 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
12777074 AAATTAGTTA
12777084 TTTT-TTTA-TTTTATTT
1 TTTTATTTATTTTTATTT
12777100 TTTTATTTATTTTTATTT
1 TTTTATTTATTTTTATTT
12777118 TTTTA
1 TTTTA
12777123 ATGTCATGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 4 0.19
17 4 0.19
18 13 0.62
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (18 bp):
TTTTATTTATTTTTATTT
Found at i:12777246 original size:15 final size:13
Alignment explanation
Indices: 12777213--12777238 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
12777203 TATTATTTTT
12777213 TTTTATCAAGTAA
1 TTTTATCAAGTAA
12777226 TTTTATCAAGTAA
1 TTTTATCAAGTAA
12777239 CTCTTTATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.46
Consensus pattern (13 bp):
TTTTATCAAGTAA
Found at i:12777525 original size:28 final size:27
Alignment explanation
Indices: 12777479--12777532 Score: 72
Period size: 28 Copynumber: 2.0 Consensus size: 27
12777469 TATAAAGCTA
* * *
12777479 TATTATTATTTTTTTTTATTATTTTTT
1 TATTATTATTTATTATTATAATTTTTT
12777506 TATTCATTATTTATTATTATAATTTTT
1 TATT-ATTATTTATTATTATAATTTTT
12777533 ATGACTCACA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 4 0.17
28 19 0.83
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.74
Consensus pattern (27 bp):
TATTATTATTTATTATTATAATTTTTT
Found at i:12777634 original size:16 final size:16
Alignment explanation
Indices: 12777615--12777645 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
12777605 TTCTTATATT
12777615 TTTAAATATTTATTTA
1 TTTAAATATTTATTTA
*
12777631 TTTACATATTTATTT
1 TTTAAATATTTATTT
12777646 TAAAAAAACT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (16 bp):
TTTAAATATTTATTTA
Found at i:12778823 original size:15 final size:14
Alignment explanation
Indices: 12778803--12778853 Score: 57
Period size: 15 Copynumber: 3.4 Consensus size: 14
12778793 GGTTCTTCTC
12778803 TTTTTATTTTTATT
1 TTTTTATTTTTATT
*
12778817 ATTTTTATTATTATT
1 -TTTTTATTTTTATT
12778832 TTTTATATATATTTATT
1 TTTT-TAT-T-TTTATT
12778849 TTTTT
1 TTTTT
12778854 TTGGAGATTC
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
14 4 0.13
15 16 0.52
16 2 0.06
17 9 0.29
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (14 bp):
TTTTTATTTTTATT
Found at i:12778846 original size:23 final size:20
Alignment explanation
Indices: 12778803--12778855 Score: 61
Period size: 22 Copynumber: 2.5 Consensus size: 20
12778793 GGTTCTTCTC
*
12778803 TTTTTATTTTTATTATTTTTA
1 TTTTT-TTTTTATTATATTTA
12778824 TTATTATTTTTTATATATATTTA
1 TT-TT-TTTTTTAT-TATATTTA
12778847 TTTTTTTTT
1 TTTTTTTTT
12778856 GGAGATTCCT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
21 7 0.25
22 11 0.39
23 10 0.36
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (20 bp):
TTTTTTTTTTATTATATTTA
Found at i:12779013 original size:37 final size:37
Alignment explanation
Indices: 12778862--12779446 Score: 859
Period size: 37 Copynumber: 15.6 Consensus size: 37
12778852 TTTTGGAGAT
* * *
12778862 TCCTCAAAGCTGAGGCAACGAAACTTTTAAAAATGAAT
1 TCCTCAAAACTGAGGCAACGAGAC-TTTAAAAATGAAC
* * *
12778900 TCCTCAAAACTGAGGCAAGGTGACTATTGAAAATGAAC
1 TCCTCAAAACTGAGGCAACGAGACT-TTAAAAATGAAC
*
12778938 TCCTCAAAGCTGAGGCAACGAGACTTTTAAAAATGAAC
1 TCCTCAAAACTGAGGCAACGAGAC-TTTAAAAATGAAC
*
12778976 TCCTCAAAGCTGAGGCAACGAGACTTTAAAAATGAAC
1 TCCTCAAAACTGAGGCAACGAGACTTTAAAAATGAAC
*
12779013 TCCTCAAAATTGAGGCAACGAGACTTTTAAAAATGAAC
1 TCCTCAAAACTGAGGCAACGAGAC-TTTAAAAATGAAC
*
12779051 TCCTAAAAACTGAGGCAACGAGACTTTAAAAATGAAC
1 TCCTCAAAACTGAGGCAACGAGACTTTAAAAATGAAC
12779088 TCCTCAAAACTGAGGCAACGAGACTTTTAAAAATGAAC
1 TCCTCAAAACTGAGGCAACGAGAC-TTTAAAAATGAAC
* *
12779126 TCCTCAAAACTGAGGCAACGACATTTTAAAAATGAAC
1 TCCTCAAAACTGAGGCAACGAGACTTTAAAAATGAAC
* *
12779163 TTCTCAAATCTGAGGC-ACTGAGACTTTAAAAATGAAC
1 TCCTCAAAACTGAGGCAAC-GAGACTTTAAAAATGAAC
*
12779200 TCCTCAAAACTGAGGCACCGAGACTTT-AAAATGAAC
1 TCCTCAAAACTGAGGCAACGAGACTTTAAAAATGAAC
*
12779236 TCCTCAAAACTGAGGCACCGAGACTTTAAAAATGAAC
1 TCCTCAAAACTGAGGCAACGAGACTTTAAAAATGAAC
* * *
12779273 TCCTAAAAACTGAGGTAACAAGACTTTAAAAATGAAC
1 TCCTCAAAACTGAGGCAACGAGACTTTAAAAATGAAC
* *
12779310 TCCTCAAAACTGAGGCAATGTGACTATTAAAAATGAAC
1 TCCTCAAAACTGAGGCAACGAGACT-TTAAAAATGAAC
* *
12779348 TCCTCAAAGCTGAGGCAACGAGATTTTTAAAAATGAAC
1 TCCTCAAAACTGAGGCAACGAGA-CTTTAAAAATGAAC
*
12779386 TCTTCAAAACTGAGGCAACGAGACTTTAAAAATGAAC
1 TCCTCAAAACTGAGGCAACGAGACTTTAAAAATGAAC
*
12779423 TCCTCAAAATTGAGGCAACGAGAC
1 TCCTCAAAACTGAGGCAACGAGAC
12779447 CTTTTTTTCT
Statistics
Matches: 496, Mismatches: 42, Indels: 19
0.89 0.08 0.03
Matches are distributed among these distances:
36 38 0.08
37 234 0.47
38 222 0.45
39 2 0.00
ACGTcount: A:0.42, C:0.20, G:0.17, T:0.22
Consensus pattern (37 bp):
TCCTCAAAACTGAGGCAACGAGACTTTAAAAATGAAC
Found at i:12779037 original size:75 final size:75
Alignment explanation
Indices: 12778862--12779446 Score: 874
Period size: 75 Copynumber: 7.8 Consensus size: 75
12778852 TTTTGGAGAT
* * * * *
12778862 TCCTCAAAGCTGAGGCAACGAAACTTTTAAAAATGAATTCCTCAAAACTGAGGCAAGGTGACTAT
1 TCCTCAAAACTGAGGCAACGAGACTTTTAAAAATGAACTCCTCAAAACTGAGGCAACGAGACT-T
*
12778927 TGAAAATGAAC
65 TAAAAATGAAC
* *
12778938 TCCTCAAAGCTGAGGCAACGAGACTTTTAAAAATGAACTCCTCAAAGCTGAGGCAACGAGACTTT
1 TCCTCAAAACTGAGGCAACGAGACTTTTAAAAATGAACTCCTCAAAACTGAGGCAACGAGACTTT
12779003 AAAAATGAAC
66 AAAAATGAAC
* *
12779013 TCCTCAAAATTGAGGCAACGAGACTTTTAAAAATGAACTCCTAAAAACTGAGGCAACGAGACTTT
1 TCCTCAAAACTGAGGCAACGAGACTTTTAAAAATGAACTCCTCAAAACTGAGGCAACGAGACTTT
12779078 AAAAATGAAC
66 AAAAATGAAC
* *
12779088 TCCTCAAAACTGAGGCAACGAGACTTTTAAAAATGAACTCCTCAAAACTGAGGCAACGACATTTT
1 TCCTCAAAACTGAGGCAACGAGACTTTTAAAAATGAACTCCTCAAAACTGAGGCAACGAGACTTT
12779153 AAAAATGAAC
66 AAAAATGAAC
* * *
12779163 TTCTCAAATCTGAGGC-ACTGAGAC-TTTAAAAATGAACTCCTCAAAACTGAGGCACCGAGACTT
1 TCCTCAAAACTGAGGCAAC-GAGACTTTTAAAAATGAACTCCTCAAAACTGAGGCAACGAGACTT
12779226 T-AAAATGAAC
65 TAAAAATGAAC
* * * *
12779236 TCCTCAAAACTGAGGCACCGAGAC-TTTAAAAATGAACTCCTAAAAACTGAGGTAACAAGACTTT
1 TCCTCAAAACTGAGGCAACGAGACTTTTAAAAATGAACTCCTCAAAACTGAGGCAACGAGACTTT
12779300 AAAAATGAAC
66 AAAAATGAAC
* * * * *
12779310 TCCTCAAAACTGAGGCAATGTGACTATTAAAAATGAACTCCTCAAAGCTGAGGCAACGAGATTTT
1 TCCTCAAAACTGAGGCAACGAGACTTTTAAAAATGAACTCCTCAAAACTGAGGCAACGAGA-CTT
12779375 TAAAAATGAAC
65 TAAAAATGAAC
* *
12779386 TCTTCAAAACTGAGGCAACGAGAC-TTTAAAAATGAACTCCTCAAAATTGAGGCAACGAGAC
1 TCCTCAAAACTGAGGCAACGAGACTTTTAAAAATGAACTCCTCAAAACTGAGGCAACGAGAC
12779447 CTTTTTTTCT
Statistics
Matches: 462, Mismatches: 42, Indels: 12
0.90 0.08 0.02
Matches are distributed among these distances:
73 64 0.14
74 70 0.15
75 236 0.51
76 92 0.20
ACGTcount: A:0.42, C:0.20, G:0.17, T:0.22
Consensus pattern (75 bp):
TCCTCAAAACTGAGGCAACGAGACTTTTAAAAATGAACTCCTCAAAACTGAGGCAACGAGACTTT
AAAAATGAAC
Found at i:12792102 original size:3 final size:3
Alignment explanation
Indices: 12792094--12792140 Score: 60
Period size: 3 Copynumber: 15.0 Consensus size: 3
12792084 TATAAAGCTA
12792094 TAT TAT TATT TAT TAT TAT TAT TAT TA- TAT TCAT TATT TAT TAT TAT
1 TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT T-AT TA-T TAT TAT TAT
12792141 AATTTTTATG
Statistics
Matches: 40, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
2 2 0.05
3 29 0.73
4 9 0.22
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:12792118 original size:19 final size:19
Alignment explanation
Indices: 12792094--12792149 Score: 69
Period size: 19 Copynumber: 2.8 Consensus size: 19
12792084 TATAAAGCTA
12792094 TATTATTATTTATTATTAT
1 TATTATTATTTATTATTAT
12792113 TATTATTATATTCATTATTTAT
1 TATTATTAT-TT-ATTA-TTAT
*
12792135 TATTATAATTT-TTAT
1 TATTATTATTTATTAT
12792150 GACTCACAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
18 1 0.03
19 12 0.36
20 2 0.06
21 6 0.18
22 12 0.36
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (19 bp):
TATTATTATTTATTATTAT
Found at i:12792134 original size:28 final size:27
Alignment explanation
Indices: 12792092--12792149 Score: 89
Period size: 28 Copynumber: 2.1 Consensus size: 27
12792082 CATATAAAGC
*
12792092 TATATTATTATTTATTATTATTATTAT
1 TATATTATTATTTATTATTATAATTAT
*
12792119 TATATTCATTATTTATTATTATAATTTT
1 TATATT-ATTATTTATTATTATAATTAT
12792147 TAT
1 TAT
12792150 GACTCACAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
27 6 0.21
28 22 0.79
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.66
Consensus pattern (27 bp):
TATATTATTATTTATTATTATAATTAT
Found at i:12793294 original size:9 final size:9
Alignment explanation
Indices: 12793280--12793309 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
12793270 TTTTTAATTA
12793280 TTTATATAT
1 TTTATATAT
12793289 TTTATATAT
1 TTTATATAT
*
12793298 TTTATTTAT
1 TTTATATAT
12793307 TTT
1 TTT
12793310 TTAGTGTCTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (9 bp):
TTTATATAT
Found at i:12800614 original size:22 final size:22
Alignment explanation
Indices: 12800586--12800630 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
12800576 AGCATCATTC
12800586 TATACATACATATGCAAAACTT
1 TATACATACATATGCAAAACTT
* *
12800608 TATACATGCATGTGCAAAACTT
1 TATACATACATATGCAAAACTT
12800630 T
1 T
12800631 TTGTGTCTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.33
Consensus pattern (22 bp):
TATACATACATATGCAAAACTT
Found at i:12803156 original size:2 final size:2
Alignment explanation
Indices: 12803149--12803196 Score: 78
Period size: 2 Copynumber: 24.0 Consensus size: 2
12803139 CTTCTTCTAC
* *
12803149 CT CT CT CT CT CT CT CC CT CT CT TT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
12803191 CT CT CT
1 CT CT CT
12803197 GTGTCAAATC
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:12815025 original size:15 final size:15
Alignment explanation
Indices: 12814988--12815016 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
12814978 TTTTTCACTG
12814988 AAAAT-AAATAAAAA
1 AAAATAAAATAAAAA
12815002 AAAATAAAATAAAAA
1 AAAATAAAATAAAAA
12815017 TAATTAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (15 bp):
AAAATAAAATAAAAA
Found at i:12819450 original size:29 final size:28
Alignment explanation
Indices: 12819412--12819579 Score: 183
Period size: 29 Copynumber: 5.8 Consensus size: 28
12819402 CTTTAGTATA
*
12819412 TTTGTTTTAATTTAGACAAGAAAATATGT
1 TTTGTCTTAATTTAGACAAGAAAATAT-T
* *
12819441 TTGGTCTTAATTTAGACAAGAAAATATG
1 TTTGTCTTAATTTAGACAAGAAAATATT
12819469 TTTGTCTTAATTTAAGACAAGAAAAATATTT
1 TTTGTCTTAATTT-AGACAAG-AAAATA-TT
* * * *
12819500 TTTGTATTAATCTAGACAAGAAAACATA
1 TTTGTCTTAATTTAGACAAGAAAATATT
* *
12819528 TTAGTCTCAATTTAGACAAGATAAAATATT
1 TTTGTCTTAATTTAGACAAG--AAAATATT
*
12819558 TTTGTCTTAATTAAAGACAAGA
1 TTTGTCTTAATT-TAGACAAGA
12819580 GTTGTTTTAA
Statistics
Matches: 115, Mismatches: 18, Indels: 12
0.79 0.12 0.08
Matches are distributed among these distances:
28 29 0.25
29 38 0.33
30 29 0.25
31 19 0.17
ACGTcount: A:0.42, C:0.08, G:0.12, T:0.38
Consensus pattern (28 bp):
TTTGTCTTAATTTAGACAAGAAAATATT
Found at i:12819516 original size:59 final size:58
Alignment explanation
Indices: 12819409--12819568 Score: 207
Period size: 59 Copynumber: 2.8 Consensus size: 58
12819399 CATCTTTAGT
* * * * *
12819409 ATATTTGTTTTAATTTAGACAAG-AAAATATGTTTGGTCTTAATTTAGACAAGAAAAT
1 ATATTTGTCTTAATTTAGACAAGAAAAATATTTTTTGTCTTAATCTAGACAAGAAAAC
* *
12819466 ATGTTTGTCTTAATTTAAGACAAGAAAAATATTTTTTGTATTAATCTAGACAAGAAAAC
1 ATATTTGTCTTAATTT-AGACAAGAAAAATATTTTTTGTCTTAATCTAGACAAGAAAAC
* *
12819525 ATATTAGTCTCAATTTAGACAAGATAAAATA-TTTTTGTCTTAAT
1 ATATTTGTCTTAATTTAGACAAGA-AAAATATTTTTTGTCTTAAT
12819569 TAAAGACAAG
Statistics
Matches: 89, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
57 14 0.16
58 27 0.30
59 48 0.54
ACGTcount: A:0.41, C:0.07, G:0.12, T:0.40
Consensus pattern (58 bp):
ATATTTGTCTTAATTTAGACAAGAAAAATATTTTTTGTCTTAATCTAGACAAGAAAAC
Found at i:12823259 original size:20 final size:20
Alignment explanation
Indices: 12823234--12823279 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
12823224 TTTTGGCCCC
12823234 ATTTGACTTATTGGAGTATA
1 ATTTGACTTATTGGAGTATA
*
12823254 ATTTGACTTATTGGAGTATG
1 ATTTGACTTATTGGAGTATA
12823274 ATTTGA
1 ATTTGA
12823280 GGTTTAGAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.28, C:0.04, G:0.22, T:0.46
Consensus pattern (20 bp):
ATTTGACTTATTGGAGTATA
Found at i:12825881 original size:22 final size:22
Alignment explanation
Indices: 12825853--12825896 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
12825843 TTCGATTGGT
*
12825853 ATCAAAGCTTTTGGTTTTAAAG
1 ATCAAAGCTTTTAGTTTTAAAG
*
12825875 ATCAAAGTTTTTAGTTTTAAAG
1 ATCAAAGCTTTTAGTTTTAAAG
12825897 TTGTTTTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.34, C:0.07, G:0.16, T:0.43
Consensus pattern (22 bp):
ATCAAAGCTTTTAGTTTTAAAG
Found at i:12832655 original size:20 final size:20
Alignment explanation
Indices: 12832638--12832675 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
12832628 CCTCAAATCT
12832638 TACTCCAATAAGTCAAATTA
1 TACTCCAATAAGTCAAATTA
12832658 TACTCCAATAAGTCAAAT
1 TACTCCAATAAGTCAAAT
12832676 GGGGCCAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.45, C:0.21, G:0.05, T:0.29
Consensus pattern (20 bp):
TACTCCAATAAGTCAAATTA
Found at i:12837519 original size:71 final size:70
Alignment explanation
Indices: 12837438--12837580 Score: 261
Period size: 71 Copynumber: 2.0 Consensus size: 70
12837428 ACCTATTATT
12837438 ATTTTATACTTTGGATAATTAAGAGATTACATGTGGTGGTTGAGAAAATGCTTAATT-TTAAGTT
1 ATTTTATACTTTGGATAATTAAGAGATTACATGTGGTGG-TGAGAAAATGCTTAATTGTTAAGTT
12837502 TTAACC
65 TTAACC
12837508 ATNTTTATACTTTGGATAATTAAGAGATTACATGTGGTGGTGAGAAAATGCTTAATTGTTAAGTT
1 AT-TTTATACTTTGGATAATTAAGAGATTACATGTGGTGGTGAGAAAATGCTTAATTGTTAAGTT
12837573 TTAACC
65 TTAACC
12837579 AT
1 AT
12837581 GGACCAATCA
Statistics
Matches: 71, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
70 19 0.27
71 52 0.73
ACGTcount: A:0.33, C:0.07, G:0.19, T:0.41
Consensus pattern (70 bp):
ATTTTATACTTTGGATAATTAAGAGATTACATGTGGTGGTGAGAAAATGCTTAATTGTTAAGTTT
TAACC
Found at i:12841070 original size:24 final size:25
Alignment explanation
Indices: 12841035--12841087 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 25
12841025 AATTTTGAAC
* *
12841035 AAATAAAATAAAGATAAACAAGTAA
1 AAATAAAATAAAGACAAACAAATAA
*
12841060 AAAT-AAATAAAGACACACAAATAA
1 AAATAAAATAAAGACAAACAAATAA
12841084 AAAT
1 AAAT
12841088 GTCACGACCC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
24 21 0.84
25 4 0.16
ACGTcount: A:0.72, C:0.08, G:0.06, T:0.15
Consensus pattern (25 bp):
AAATAAAATAAAGACAAACAAATAA
Found at i:12846445 original size:21 final size:20
Alignment explanation
Indices: 12846421--12846468 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
12846411 ATTTTACCTT
* *
12846421 TTTTTCATTTGTTTCCTTGAA
1 TTTTTCACTT-TTCCCTTGAA
*
12846442 TTTTCACACTTTTCCCTTGAA
1 TTTT-TCACTTTTCCCTTGAA
12846463 TTTTTC
1 TTTTTC
12846469 CACCTAGGGT
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
20 1 0.05
21 17 0.77
22 4 0.18
ACGTcount: A:0.15, C:0.21, G:0.06, T:0.58
Consensus pattern (20 bp):
TTTTTCACTTTTCCCTTGAA
Found at i:12849590 original size:47 final size:45
Alignment explanation
Indices: 12849532--12849624 Score: 168
Period size: 47 Copynumber: 2.0 Consensus size: 45
12849522 TTTTGTTTAT
12849532 AATATTATATAATTTAAAATTACTTTTAATAAAAAAATCAACACCC
1 AATATTATATAATTTAAAATTACTTTTAAT-AAAAAATCAACACCC
12849578 ANATATTATATAATTTAAAATTACTTTTAATAAAAAATCAACACCC
1 A-ATATTATATAATTTAAAATTACTTTTAATAAAAAATCAACACCC
12849624 A
1 A
12849625 TGTGAAGCGA
Statistics
Matches: 46, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
46 17 0.37
47 29 0.63
ACGTcount: A:0.52, C:0.13, G:0.00, T:0.34
Consensus pattern (45 bp):
AATATTATATAATTTAAAATTACTTTTAATAAAAAATCAACACCC
Found at i:12852961 original size:13 final size:13
Alignment explanation
Indices: 12852943--12852967 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
12852933 TTCCAGAAAA
12852943 TTTATAAAATCAT
1 TTTATAAAATCAT
12852956 TTTATAAAATCA
1 TTTATAAAATCA
12852968 CAATTTCTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTTATAAAATCAT
Found at i:12854158 original size:27 final size:28
Alignment explanation
Indices: 12854101--12854158 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 28
12854091 GGAAAAATGT
*
12854101 CCTGGTGGTGGAAAATTACAATTTTGCC
1 CCTGGTGGTGGAAAATTACAATTTTGAC
12854129 CCTGG-GGTGGTAAAATTATC-ATTTT-AC
1 CCTGGTGGTGG-AAAATTA-CAATTTTGAC
12854156 CCT
1 CCT
12854159 TTTATTCTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
27 9 0.33
28 17 0.63
29 1 0.04
ACGTcount: A:0.24, C:0.19, G:0.22, T:0.34
Consensus pattern (28 bp):
CCTGGTGGTGGAAAATTACAATTTTGAC
Found at i:12854229 original size:20 final size:20
Alignment explanation
Indices: 12854212--12854249 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
12854202 CCTCAAATCT
12854212 TACTCCAATAAGTCAAATTA
1 TACTCCAATAAGTCAAATTA
12854232 TACTCCAATAAGTCAAAT
1 TACTCCAATAAGTCAAAT
12854250 GGGGCCAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.45, C:0.21, G:0.05, T:0.29
Consensus pattern (20 bp):
TACTCCAATAAGTCAAATTA
Found at i:12855294 original size:49 final size:52
Alignment explanation
Indices: 12855231--12855408 Score: 159
Period size: 55 Copynumber: 3.4 Consensus size: 52
12855221 TGCGCGTGTA
*
12855231 CGGTGTGGGGGTGCACATGCTG-G-T-GAT-GACGAATGATTCCAACTATGTG
1 CGGTGTGGGAGTGCACATGCTGAGCTCGATGGACG-ATGATTCCAACTATGTG
* * *
12855280 CGTTGTGGGAGTGCACATGAGCTGATGCTCGGTGGATGATGATTCCAACTATGTG
1 CGGTGTGGGAGTGCACAT--GCTGA-GCTCGATGGACGATGATTCCAACTATGTG
* * * * *
12855335 CGGTGTGAGAGTGCACATGAGCTGATG-TCTGGTGGATGATGATTCTAGCTATGTG
1 CGGTGTGGGAGTGCACAT--GCTGA-GCTC-GATGGACGATGATTCCAACTATGTG
*
12855390 CAGTGTGGGAGTGCACATG
1 CGGTGTGGGAGTGCACATG
12855409 AGCTGATGAC
Statistics
Matches: 111, Mismatches: 10, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
49 16 0.14
51 4 0.04
53 2 0.02
54 3 0.03
55 83 0.75
56 3 0.03
ACGTcount: A:0.20, C:0.15, G:0.37, T:0.28
Consensus pattern (52 bp):
CGGTGTGGGAGTGCACATGCTGAGCTCGATGGACGATGATTCCAACTATGTG
Found at i:12855333 original size:55 final size:54
Alignment explanation
Indices: 12855263--12855429 Score: 248
Period size: 55 Copynumber: 3.0 Consensus size: 54
12855253 GTGATGACGA
12855263 ATGATTCCAACTATGTGCGTTGTGGGAGTGCACATGAGCTGATGCTCGGTGGATG
1 ATGATTCCAACTATGTGCG-TGTGGGAGTGCACATGAGCTGATGCTCGGTGGATG
*
12855318 ATGATTCCAACTATGTGCGGTGTGAGAGTGCACATGAGCTGATG-TCTGGTGGATG
1 ATGATTCCAACTATGTGC-GTGTGGGAGTGCACATGAGCTGATGCTC-GGTGGATG
* *
12855373 ATGATTCTAGCTATGTGCAGTGTGGGAGTGCACATGAGCTGATGACT-GGTGGATG
1 ATGATTCCAACTATGTGC-GTGTGGGAGTGCACATGAGCTGATG-CTCGGTGGATG
12855428 AT
1 AT
12855430 TACATGTTTA
Statistics
Matches: 103, Mismatches: 5, Indels: 8
0.89 0.04 0.07
Matches are distributed among these distances:
54 2 0.02
55 99 0.96
56 1 0.01
57 1 0.01
ACGTcount: A:0.22, C:0.14, G:0.35, T:0.29
Consensus pattern (54 bp):
ATGATTCCAACTATGTGCGTGTGGGAGTGCACATGAGCTGATGCTCGGTGGATG
Found at i:12863828 original size:18 final size:19
Alignment explanation
Indices: 12863791--12863834 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
12863781 TTTAGGATCG
12863791 AATTTATGTAGTTTTATTT
1 AATTTATGTAGTTTTATTT
*
12863810 ATTTTAT-TAG-TTTAGTTT
1 AATTTATGTAGTTTTA-TTT
12863828 AATTTAT
1 AATTTAT
12863835 ATTTAAATGT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 4 0.18
18 12 0.55
19 6 0.27
ACGTcount: A:0.27, C:0.00, G:0.09, T:0.64
Consensus pattern (19 bp):
AATTTATGTAGTTTTATTT
Found at i:12865027 original size:55 final size:55
Alignment explanation
Indices: 12864967--12865123 Score: 179
Period size: 58 Copynumber: 2.8 Consensus size: 55
12864957 TGATGACGGG
*
12864967 TGATTCCAACTATGTGCGGTGTGGGAGTACACATGAGCTGATGACCAGTGGATGA
1 TGATTCCAACTATGTGCGGTGTGGGAGTGCACATGAGCTGATGACCAGTGGATGA
* * * * * * *
12865022 TGATTCTAGCTATTATGTGTGGTGTAGGAGTGCACATGAGCTAATGACCGGTGGGTGA
1 TGATTC---CAACTATGTGCGGTGTGGGAGTGCACATGAGCTGATGACCAGTGGATGA
** * *
12865080 TGATTCCAGGTATGTGCTGTGTGGGAGTGCACATGAGTTGATGA
1 TGATTCCAACTATGTGCGGTGTGGGAGTGCACATGAGCTGATGA
12865124 TTGTGGATGA
Statistics
Matches: 83, Mismatches: 16, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
55 36 0.43
58 47 0.57
ACGTcount: A:0.23, C:0.13, G:0.34, T:0.29
Consensus pattern (55 bp):
TGATTCCAACTATGTGCGGTGTGGGAGTGCACATGAGCTGATGACCAGTGGATGA
Found at i:12868719 original size:19 final size:19
Alignment explanation
Indices: 12868695--12868731 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
12868685 GTGGCAAGGT
12868695 GAAAATGGCATGGGAGCAA
1 GAAAATGGCATGGGAGCAA
12868714 GAAAATGGCATGGGAGCA
1 GAAAATGGCATGGGAGCA
12868732 TGAAGGTGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.41, C:0.11, G:0.38, T:0.11
Consensus pattern (19 bp):
GAAAATGGCATGGGAGCAA
Found at i:12871839 original size:24 final size:24
Alignment explanation
Indices: 12871812--12871858 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
12871802 AGTTTTTCAA
* *
12871812 TTTCTTTTCCTTTT-TTTCTTCTTG
1 TTTCATTT-CTTTTCTTGCTTCTTG
12871836 TTTCATTTCTTTTCTTGCTTCTT
1 TTTCATTTCTTTTCTTGCTTCTT
12871859 TCTTCTCCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 5 0.25
24 15 0.75
ACGTcount: A:0.02, C:0.21, G:0.04, T:0.72
Consensus pattern (24 bp):
TTTCATTTCTTTTCTTGCTTCTTG
Found at i:12875123 original size:42 final size:42
Alignment explanation
Indices: 12875064--12875186 Score: 210
Period size: 42 Copynumber: 2.9 Consensus size: 42
12875054 GTTGATTTGA
12875064 ACCCGGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCTG
1 ACCCGGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCTG
* *
12875106 ACCCGACTATGTGCGAGTAGGAGTGCATATAAGCCGTTGCTG
1 ACCCGGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCTG
* *
12875148 ACCCGGCTATGTGTGAGTGGGAGTGCACATAAGCCGTTG
1 ACCCGGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTG
12875187 TTGCCCCCAT
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.33, T:0.23
Consensus pattern (42 bp):
ACCCGGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCTG
Found at i:12875457 original size:26 final size:26
Alignment explanation
Indices: 12875421--12875482 Score: 106
Period size: 26 Copynumber: 2.4 Consensus size: 26
12875411 TTGCATATGA
12875421 GATGATGATGATGGGATGATGTGCAT
1 GATGATGATGATGGGATGATGTGCAT
*
12875447 GATGATGATGATGGGATGGTGTGCAT
1 GATGATGATGATGGGATGATGTGCAT
*
12875473 GTTGATGATG
1 GATGATGATG
12875483 GGTATATGGT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.24, C:0.03, G:0.40, T:0.32
Consensus pattern (26 bp):
GATGATGATGATGGGATGATGTGCAT
Found at i:12878221 original size:42 final size:42
Alignment explanation
Indices: 12878169--12878377 Score: 247
Period size: 42 Copynumber: 5.0 Consensus size: 42
12878159 CATCTCATAT
* * * *
12878169 GCAATGGCTTATGCGTACTCCCACTCGCATATAGCCGGGTCA
1 GCAACGGCTTATGTGCACTCCCACTCGCACATAGCCGGGTCA
* *
12878211 GCAACGGCTTATGTGCACTCCCACTCACACATAGTCGGGTCA
1 GCAACGGCTTATGTGCACTCCCACTCGCACATAGCCGGGTCA
** * * *
12878253 GCAACAACTTATGTGCACTCCCATTCACTCATAGCCGGGTCA
1 GCAACGGCTTATGTGCACTCCCACTCGCACATAGCCGGGTCA
* * *
12878295 GCAACGGCTTATGTGCACTCCTACTTGCACATAGCGGGGTCA
1 GCAACGGCTTATGTGCACTCCCACTCGCACATAGCCGGGTCA
* * * * *
12878337 ACAATGGCTTATGTGCACTACTACTTGCACATAGCCGGGTC
1 GCAACGGCTTATGTGCACTCCCACTCGCACATAGCCGGGTC
12878378 CACATCAACA
Statistics
Matches: 144, Mismatches: 23, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 144 1.00
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (42 bp):
GCAACGGCTTATGTGCACTCCCACTCGCACATAGCCGGGTCA
Found at i:12879563 original size:24 final size:23
Alignment explanation
Indices: 12879536--12879580 Score: 72
Period size: 24 Copynumber: 1.9 Consensus size: 23
12879526 AAGCAAGAAG
*
12879536 GGAAAAGAAATGAAAAGAAAATAA
1 GGAAAAAAAATGAAAA-AAAATAA
12879560 GGAAAAAAAATGAAAAAAAAT
1 GGAAAAAAAATGAAAAAAAAT
12879581 TAGCTTTCCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 5 0.25
24 15 0.75
ACGTcount: A:0.73, C:0.00, G:0.18, T:0.09
Consensus pattern (23 bp):
GGAAAAAAAATGAAAAAAAATAA
Found at i:12882121 original size:113 final size:111
Alignment explanation
Indices: 12881984--12882208 Score: 396
Period size: 113 Copynumber: 2.0 Consensus size: 111
12881974 AAAAATTAAC
* *
12881984 TACTCATAGTGAAAATAAAGAATATAAAACAATGAAATTTAATGATCTCAAACAAAAGAAACAAG
1 TACTCATAATGAAAATAAAGAATATAAAACAATGAAATTTAACGATCTCAAACAAAAGAAACAAG
12882049 AAAACTAGAGAGCAAAAAAAAAAACTAGAGATTAGTGATCTTCAATCT
66 AAAACTAGAGAG--AAAAAAAAAACTAGAGATTAGTGATCTTCAATCT
12882097 TACTCATAATGAAAATAAAGAATATAAAACAATGAAATTTAACGATCTCAAACAAAAGAAACAAG
1 TACTCATAATGAAAATAAAGAATATAAAACAATGAAATTTAACGATCTCAAACAAAAGAAACAAG
* *
12882162 GAAACTAGAGAGAGAAAAAAAACTAGAGATTAGTGATCTTCAATCT
66 AAAACTAGAGAGAAAAAAAAAACTAGAGATTAGTGATCTTCAATCT
12882208 T
1 T
12882209 CCATGGTTGA
Statistics
Matches: 108, Mismatches: 4, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
111 34 0.31
113 74 0.69
ACGTcount: A:0.54, C:0.12, G:0.13, T:0.21
Consensus pattern (111 bp):
TACTCATAATGAAAATAAAGAATATAAAACAATGAAATTTAACGATCTCAAACAAAAGAAACAAG
AAAACTAGAGAGAAAAAAAAAACTAGAGATTAGTGATCTTCAATCT
Found at i:12890026 original size:11 final size:11
Alignment explanation
Indices: 12890010--12890037 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
12890000 ACTGTAAATT
12890010 TTTAAAACAAC
1 TTTAAAACAAC
12890021 TTTAAAACAAC
1 TTTAAAACAAC
12890032 TTTAAA
1 TTTAAA
12890038 CCCAAAAGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.54, C:0.14, G:0.00, T:0.32
Consensus pattern (11 bp):
TTTAAAACAAC
Found at i:12890056 original size:22 final size:22
Alignment explanation
Indices: 12890031--12890074 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
12890021 TTTAAAACAA
*
12890031 CTTTAAACCCAAAAGCTCTGAT
1 CTTTAAAACCAAAAGCTCTGAT
12890053 CTTTAAAACCAAAAGCTCTGAT
1 CTTTAAAACCAAAAGCTCTGAT
12890075 ACTAATATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.39, C:0.25, G:0.09, T:0.27
Consensus pattern (22 bp):
CTTTAAAACCAAAAGCTCTGAT
Found at i:12890315 original size:21 final size:21
Alignment explanation
Indices: 12890289--12890329 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
12890279 ATTGTTATGT
12890289 TATTTTTGCTCCGAAAATTCG
1 TATTTTTGCTCCGAAAATTCG
12890310 TATTTTTGCTCCGAAAATTC
1 TATTTTTGCTCCGAAAATTC
12890330 TCATTATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.24, C:0.20, G:0.12, T:0.44
Consensus pattern (21 bp):
TATTTTTGCTCCGAAAATTCG
Found at i:12892083 original size:42 final size:42
Alignment explanation
Indices: 12891997--12892084 Score: 104
Period size: 42 Copynumber: 2.1 Consensus size: 42
12891987 TTTGAAAACA
* * * * * *
12891997 ATTTGATTATGCTTGGGAAGCAAACTTTGAAATTCTTTGGAT
1 ATTTAATTACGCTTGAGAAGCAAACTTTGAAATCCTTCGAAT
* *
12892039 ATTTAATTACGCTTGAGAAGCGAACTTTGAACTCCTTCGAAT
1 ATTTAATTACGCTTGAGAAGCAAACTTTGAAATCCTTCGAAT
12892081 ATTT
1 ATTT
12892085 GAATACATTT
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.30, C:0.14, G:0.18, T:0.39
Consensus pattern (42 bp):
ATTTAATTACGCTTGAGAAGCAAACTTTGAAATCCTTCGAAT
Found at i:12894115 original size:2 final size:2
Alignment explanation
Indices: 12894103--12894140 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
12894093 ACCATACACC
*
12894103 AT AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
12894141 CAATCATCAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:12894254 original size:42 final size:42
Alignment explanation
Indices: 12894208--12894292 Score: 109
Period size: 42 Copynumber: 2.0 Consensus size: 42
12894198 TGGCTGGGTT
*
12894208 AGCATCGGCTTAT-AAGCACTCCCACTCGCACATAGTCCGGTC
1 AGCATCGACTTATGAA-CACTCCCACTCGCACATAGTCCGGTC
* * * *
12894250 AGCATCGACTTATGCACACTCCTACTTGCACATAGTCGGGTC
1 AGCATCGACTTATGAACACTCCCACTCGCACATAGTCCGGTC
12894292 A
1 A
12894293 ATATCATTAC
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
42 36 0.97
43 1 0.03
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.24
Consensus pattern (42 bp):
AGCATCGACTTATGAACACTCCCACTCGCACATAGTCCGGTC
Found at i:12897698 original size:17 final size:18
Alignment explanation
Indices: 12897677--12897730 Score: 60
Period size: 17 Copynumber: 3.0 Consensus size: 18
12897667 TCTTCACAAC
12897677 AAAGAAAAATGCACAAGT
1 AAAGAAAAATGCACAAGT
12897695 -AAGAAAAAGTG-A-AGAGT
1 AAAGAAAAA-TGCACA-AGT
12897712 AAAGAGAAAATGCACAAGT
1 AAAGA-AAAATGCACAAGT
12897731 TCAAAAAGTA
Statistics
Matches: 30, Mismatches: 0, Indels: 11
0.73 0.00 0.27
Matches are distributed among these distances:
16 1 0.03
17 12 0.40
18 8 0.27
19 8 0.27
20 1 0.03
ACGTcount: A:0.59, C:0.07, G:0.22, T:0.11
Consensus pattern (18 bp):
AAAGAAAAATGCACAAGT
Found at i:12898002 original size:28 final size:29
Alignment explanation
Indices: 12897961--12898020 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 29
12897951 CCTGGTTAAG
* * *
12897961 GCATAATCTCTCTA-CTTTCAAGGCTAAA
1 GCATAACCTATCTATCTTTCAAGACTAAA
* *
12897989 GCATAACCTATCTATTTTTCAAGACTCAA
1 GCATAACCTATCTATCTTTCAAGACTAAA
12898018 GCA
1 GCA
12898021 CAATCTCTAC
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
28 12 0.46
29 14 0.54
ACGTcount: A:0.33, C:0.25, G:0.10, T:0.32
Consensus pattern (29 bp):
GCATAACCTATCTATCTTTCAAGACTAAA
Found at i:12898978 original size:20 final size:20
Alignment explanation
Indices: 12898955--12898993 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
12898945 TGAGAAACAG
*
12898955 AAAAGATTTAGTCGACTAAC
1 AAAAGAGTTAGTCGACTAAC
*
12898975 AAAAGGGTTAGTCGACTAA
1 AAAAGAGTTAGTCGACTAA
12898994 GAGTCTACTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.44, C:0.13, G:0.21, T:0.23
Consensus pattern (20 bp):
AAAAGAGTTAGTCGACTAAC
Found at i:12899077 original size:73 final size:73
Alignment explanation
Indices: 12898981--12899141 Score: 177
Period size: 73 Copynumber: 2.2 Consensus size: 73
12898971 TAACAAAAGG
* * *
12898981 GTTAGTCGACTAAGAGTCTACTGCCAGAAATCT-GGACTT-CAAGATAGAAACAATTTAATCGAC
1 GTTAGTCGACTAAGAGTCTACTGCCAGAAA-CTAGGA-TTACAAAATAGAAACAACTTAATCAAC
12899044 TAAGAAG-GAA
64 TAAG-AGCGAA
* * * *
12899054 GTTAGTCGACTAAGTG-CTCACTGCTAGAAACTAGGATTAGAAAATAGAAACAACTTACTCAACT
1 GTTAGTCGACTAAGAGTCT-ACTGCCAGAAACTAGGATTACAAAATAGAAACAACTTAATCAACT
*
12899118 AAGAGCGCA
65 AAGAGCGAA
*
12899127 GTTAGTCAACTAAGA
1 GTTAGTCGACTAAGA
12899142 TCATTCTGTC
Statistics
Matches: 74, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
72 8 0.11
73 66 0.89
ACGTcount: A:0.40, C:0.17, G:0.20, T:0.23
Consensus pattern (73 bp):
GTTAGTCGACTAAGAGTCTACTGCCAGAAACTAGGATTACAAAATAGAAACAACTTAATCAACTA
AGAGCGAA
Found at i:12900222 original size:20 final size:20
Alignment explanation
Indices: 12900197--12900238 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
12900187 TAAGGCAATC
12900197 AATATATTGCATTGTGCTTT
1 AATATATTGCATTGTGCTTT
12900217 AATATATTGCATTGTGCTTT
1 AATATATTGCATTGTGCTTT
12900237 AA
1 AA
12900239 CTCCCACTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.29, C:0.10, G:0.14, T:0.48
Consensus pattern (20 bp):
AATATATTGCATTGTGCTTT
Found at i:12908147 original size:20 final size:20
Alignment explanation
Indices: 12908124--12908166 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
12908114 ATTAGAAAAT
*
12908124 AGAA-ACAACTTAGTCGACTA
1 AGAACACAA-TTAGTCAACTA
*
12908144 AGAACGCAATTAGTCAACTA
1 AGAACACAATTAGTCAACTA
12908164 AGA
1 AGA
12908167 TCATTCTGTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 17 0.85
21 3 0.15
ACGTcount: A:0.47, C:0.19, G:0.16, T:0.19
Consensus pattern (20 bp):
AGAACACAATTAGTCAACTA
Found at i:12909719 original size:20 final size:21
Alignment explanation
Indices: 12909694--12909744 Score: 77
Period size: 20 Copynumber: 2.5 Consensus size: 21
12909684 GATAAGTTGG
*
12909694 AAGAAAGGAGAAAG-GAAAGA
1 AAGAAAGGAGAAAGAAAAAGA
12909714 AAGAAAGGAGAAAGAAAAAGA
1 AAGAAAGGAGAAAGAAAAAGA
*
12909735 GAGAAAGGAG
1 AAGAAAGGAG
12909745 GAAAAAAGCT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
20 14 0.50
21 14 0.50
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (21 bp):
AAGAAAGGAGAAAGAAAAAGA
Found at i:12916818 original size:83 final size:78
Alignment explanation
Indices: 12916678--12916839 Score: 279
Period size: 83 Copynumber: 2.0 Consensus size: 78
12916668 AAAAAAAAAT
12916678 TATGAAAATAAACAAACCTAAAAACATCACAAAAACTAATAACAATAAAACCCTCCCCCAAACCT
1 TATGAAAATAAACAAACCTAAAAACATCACAAAAACTAATAACAATAAAACCCTCCCCCAAA-CT
12916743 TAAAATTTAGCACATTG
65 T-AAA-TT-GCACATTG
12916760 TNATGAAAATAAACAAACCTAAAAACATCACAAAAACTAATAACAATAAAACCCTCCCCCAAACT
1 T-ATGAAAATAAACAAACCTAAAAACATCACAAAAACTAATAACAATAAAACCCTCCCCCAAACT
12916825 TAAATTGCACATTG
65 TAAATTGCACATTG
12916839 T
1 T
12916840 CCTCAATGTT
Statistics
Matches: 79, Mismatches: 0, Indels: 5
0.94 0.00 0.06
Matches are distributed among these distances:
79 9 0.11
80 2 0.03
81 3 0.04
82 4 0.05
83 61 0.77
ACGTcount: A:0.52, C:0.24, G:0.04, T:0.20
Consensus pattern (78 bp):
TATGAAAATAAACAAACCTAAAAACATCACAAAAACTAATAACAATAAAACCCTCCCCCAAACTT
AAATTGCACATTG
Found at i:12920082 original size:68 final size:67
Alignment explanation
Indices: 12919918--12920110 Score: 208
Period size: 68 Copynumber: 2.9 Consensus size: 67
12919908 CATGTTTGGT
* * * * *
12919918 ATGATGAATGCCATAAGATTAGGTATATGATGTGAATTTCATACACCATATGAGA-GTATTAATA
1 ATGATGAATGCCATAAGATTATGTATATGATGTAAATTTCATATACCATATGAGATG-ATGAAGA
*
12919982 TGC
65 AGC
* * * * * *
12919985 ATGATGTATACTATAAGATTGTGTATATGATGTAAATTCCATATACCATATGAGATGACTGAGGA
1 ATGATGAATGCCATAAGATTATGTATATGATGTAAATTTCATATACCATATGAGATGA-TGAAGA
12920050 AGC
65 AGC
* * ** *
12920053 ATGATGAATGCCATGAGATTATGTATATGACGTATTTTTCATATACCTTATGAGATGA
1 ATGATGAATGCCATAAGATTATGTATATGATGTAAATTTCATATACCATATGAGATGA
12920111 GTAAACATGT
Statistics
Matches: 102, Mismatches: 22, Indels: 3
0.80 0.17 0.02
Matches are distributed among these distances:
67 48 0.47
68 54 0.53
ACGTcount: A:0.36, C:0.10, G:0.20, T:0.34
Consensus pattern (67 bp):
ATGATGAATGCCATAAGATTATGTATATGATGTAAATTTCATATACCATATGAGATGATGAAGAA
GC
Found at i:12921524 original size:20 final size:20
Alignment explanation
Indices: 12921499--12921547 Score: 73
Period size: 20 Copynumber: 2.4 Consensus size: 20
12921489 TTAAGAGAGA
12921499 GAAAGAAAGAAA-GAAGAAAG
1 GAAAGAAAGAAAGGAA-AAAG
12921519 GAAAGAAAGAAAGGAAAAAG
1 GAAAGAAAGAAAGGAAAAAG
12921539 GAAGAGAAA
1 GAA-AGAAA
12921548 AGCTCGAAGG
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
20 19 0.70
21 8 0.30
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (20 bp):
GAAAGAAAGAAAGGAAAAAG
Found at i:12921535 original size:5 final size:4
Alignment explanation
Indices: 12921498--12921531 Score: 52
Period size: 4 Copynumber: 8.5 Consensus size: 4
12921488 CTTAAGAGAG
12921498 AGAA AGAA AGAA AG-A AGAA AGGAA AGAA AGAA AG
1 AGAA AGAA AGAA AGAA AGAA A-GAA AGAA AGAA AG
12921532 GAAAAAGGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
3 3 0.11
4 21 0.75
5 4 0.14
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:12922754 original size:39 final size:39
Alignment explanation
Indices: 12922710--12922860 Score: 195
Period size: 39 Copynumber: 3.9 Consensus size: 39
12922700 TACACACCAA
*
12922710 ATGATATATGCCATGTGTGGTGT-GAGAGAGCACATGATG
1 ATGATATATGCCATGTGCGGTGTAG-GAGAGCACATGATG
12922749 ATGATATATGCCATGTGCGGTGTAGGAGAGCACATGATG
1 ATGATATATGCCATGTGCGGTGTAGGAGAGCACATGATG
*
12922788 ATGATATATGCCATGTGCGGTGTAGGAGTA-CACATGAGG
1 ATGATATATGCCATGTGCGGTGTAGGAG-AGCACATGATG
* * * *
12922827 AT-AT-TA-GCTATGTGCAGTGTGGGAGTGCACATGA
1 ATGATATATGCCATGTGCGGTGTAGGAGAGCACATGA
12922861 GCTGAGTTAA
Statistics
Matches: 103, Mismatches: 6, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
36 23 0.22
37 2 0.02
38 2 0.02
39 74 0.72
40 2 0.02
ACGTcount: A:0.28, C:0.12, G:0.33, T:0.27
Consensus pattern (39 bp):
ATGATATATGCCATGTGCGGTGTAGGAGAGCACATGATG
Found at i:12924332 original size:14 final size:14
Alignment explanation
Indices: 12924309--12924348 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 14
12924299 ATGTTTTCCA
12924309 AATGATGAATGTTT
1 AATGATGAATGTTT
* *
12924323 TATGACGAATGTTT
1 AATGATGAATGTTT
12924337 AATGATGAATGT
1 AATGATGAATGT
12924349 GACAAAAGCT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.35, C:0.03, G:0.23, T:0.40
Consensus pattern (14 bp):
AATGATGAATGTTT
Found at i:12924874 original size:2 final size:2
Alignment explanation
Indices: 12924867--12924894 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
12924857 GAATGTGGCT
12924867 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
12924895 AAATGTCACA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:12927991 original size:16 final size:16
Alignment explanation
Indices: 12927970--12928005 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
12927960 GAGTAAGAAG
12927970 TTTGGAGATCGTTCCT
1 TTTGGAGATCGTTCCT
*
12927986 TTTGGAGATTGTTCCT
1 TTTGGAGATCGTTCCT
12928002 TTTG
1 TTTG
12928006 ATCTAGAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.11, C:0.14, G:0.25, T:0.50
Consensus pattern (16 bp):
TTTGGAGATCGTTCCT
Found at i:12930548 original size:2 final size:2
Alignment explanation
Indices: 12930538--12930578 Score: 55
Period size: 2 Copynumber: 20.5 Consensus size: 2
12930528 ACATATTTAC
* * *
12930538 AT AT GT AT AT AC AT AT AT AT AT AT AT AT AT AT AT GT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
12930579 CCCATCATCA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.46, C:0.02, G:0.05, T:0.46
Consensus pattern (2 bp):
AT
Found at i:12930552 original size:12 final size:12
Alignment explanation
Indices: 12930530--12930571 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
12930520 TATATCACAC
*
12930530 ATATTTACATAT
1 ATATATACATAT
*
12930542 GTATATACATAT
1 ATATATACATAT
*
12930554 ATATATATATAT
1 ATATATACATAT
12930566 ATATAT
1 ATATAT
12930572 GTATATACCC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.45, C:0.05, G:0.02, T:0.48
Consensus pattern (12 bp):
ATATATACATAT
Found at i:12930616 original size:20 final size:20
Alignment explanation
Indices: 12930578--12930636 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
12930568 ATATGTATAT
12930578 ACCCATCATCATC-TCACCA
1 ACCCATCATCATCATCACCA
12930597 ACCCATCATCATCATCACCA
1 ACCCATCATCATCATCACCA
*
12930617 ACTCATCATCATCATCACCA
1 ACCCATCATCATCATCACCA
12930637 GCTCATGCGC
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
19 13 0.34
20 25 0.66
ACGTcount: A:0.34, C:0.44, G:0.00, T:0.22
Consensus pattern (20 bp):
ACCCATCATCATCATCACCA
Found at i:12930689 original size:43 final size:43
Alignment explanation
Indices: 12930641--12930759 Score: 134
Period size: 43 Copynumber: 2.8 Consensus size: 43
12930631 TCACCAGCTC
* ** *
12930641 ATGCGCACTCCTTACTCGCACAT-GGCTGGGTCATCAC-CGGGTT
1 ATGCGCACTCCCTACTCGCACATAATC-GGGTCATC-CTCGGCTT
12930684 ATGCGCACTCCCTACTCGCACATAATCGGGTCATCCTCGGCTT
1 ATGCGCACTCCCTACTCGCACATAATCGGGTCATCCTCGGCTT
* * * *
12930727 ATGCGCACTCCCTATTGGCACATAGTCGAGTCA
1 ATGCGCACTCCCTACTCGCACATAATCGGGTCA
12930760 ACATAATTCC
Statistics
Matches: 66, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
42 1 0.02
43 64 0.97
44 1 0.02
ACGTcount: A:0.19, C:0.34, G:0.22, T:0.25
Consensus pattern (43 bp):
ATGCGCACTCCCTACTCGCACATAATCGGGTCATCCTCGGCTT
Found at i:12938466 original size:2 final size:2
Alignment explanation
Indices: 12938456--12938498 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
12938446 ACATATTTAC
*
12938456 AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
12938498 A
1 A
12938499 NNNNNNNNNN
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (2 bp):
AT
Found at i:12941916 original size:21 final size:21
Alignment explanation
Indices: 12941883--12941938 Score: 76
Period size: 21 Copynumber: 2.7 Consensus size: 21
12941873 AGTTGCTATT
*
12941883 TATCAATAGATGTTGAACATC
1 TATCGATAGATGTTGAACATC
* * *
12941904 TATTGATATATGTTGAACATT
1 TATCGATAGATGTTGAACATC
12941925 TATCGATAGATGTT
1 TATCGATAGATGTT
12941939 CTTTAACCCT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.34, C:0.09, G:0.16, T:0.41
Consensus pattern (21 bp):
TATCGATAGATGTTGAACATC
Found at i:12946775 original size:34 final size:34
Alignment explanation
Indices: 12946737--12946833 Score: 96
Period size: 34 Copynumber: 2.9 Consensus size: 34
12946727 CTCAAAACTA
12946737 CCTTTTCATGAGAGCAAGCATAACCCACACAAT-G
1 CCTTTTCATGAGAGCAAGCATAACCC-CACAATAG
*
12946771 CCTTTTAACA-G-GAGCAAGCACAA-CCCACAATAG
1 CCTTTT--CATGAGAGCAAGCATAACCCCACAATAG
* *
12946804 CC-TTTCATTAGAGCAATCATAACCCTCACA
1 CCTTTTCATGAGAGCAAGCATAACCC-CACA
12946834 CTAAATTTTC
Statistics
Matches: 52, Mismatches: 4, Indels: 14
0.74 0.06 0.20
Matches are distributed among these distances:
30 2 0.04
32 19 0.37
33 7 0.13
34 21 0.40
35 1 0.02
36 2 0.04
ACGTcount: A:0.36, C:0.31, G:0.12, T:0.21
Consensus pattern (34 bp):
CCTTTTCATGAGAGCAAGCATAACCCCACAATAG
Found at i:12946818 original size:32 final size:33
Alignment explanation
Indices: 12946740--12946833 Score: 93
Period size: 33 Copynumber: 2.8 Consensus size: 33
12946730 AAAACTACCT
*
12946740 TTTCATGAGAGCAAGCATAACCCACACAATGCC
1 TTTCATCAGAGCAAGCATAACCCACACAATGCC
* * *
12946773 TTTTAACAGGAGCAAGCACAA-CC-CACAATAGCC
1 TTTCATCA-GAGCAAGCATAACCCACACAAT-GCC
* * *
12946806 TTTCATTAGAGCAATCATAACCCTCACA
1 TTTCATCAGAGCAAGCATAACCCACACA
12946834 CTAAATTTTC
Statistics
Matches: 48, Mismatches: 9, Indels: 7
0.75 0.14 0.11
Matches are distributed among these distances:
32 16 0.33
33 17 0.35
34 15 0.31
ACGTcount: A:0.37, C:0.30, G:0.13, T:0.20
Consensus pattern (33 bp):
TTTCATCAGAGCAAGCATAACCCACACAATGCC
Found at i:12949145 original size:42 final size:42
Alignment explanation
Indices: 12949083--12949199 Score: 155
Period size: 42 Copynumber: 2.8 Consensus size: 42
12949073 GTGATAATTA
* *
12949083 TGACCCAACCATGTGTGGTGTAGGAGTGCACATGAGCTGTGC
1 TGACCCAGCCATGTGTGGTGTAGGAGTGCACATGAGCTATGC
* * *
12949125 TGACCTAGCCATGTGCGGTGTAGGAGTGCACATGAGCTATGT
1 TGACCCAGCCATGTGTGGTGTAGGAGTGCACATGAGCTATGC
* *
12949167 TGACCCGGCTATGTGTGGTGT-GGTAGTGCACAT
1 TGACCCAGCCATGTGTGGTGTAGG-AGTGCACAT
12949200 AAGTTGAGAT
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
41 2 0.03
42 63 0.97
ACGTcount: A:0.20, C:0.20, G:0.34, T:0.26
Consensus pattern (42 bp):
TGACCCAGCCATGTGTGGTGTAGGAGTGCACATGAGCTATGC
Found at i:12949241 original size:2 final size:2
Alignment explanation
Indices: 12949234--12949272 Score: 51
Period size: 2 Copynumber: 19.0 Consensus size: 2
12949224 GGCCGATGGT
* *
12949234 TA TA TA TA TG TT TA TA TA TGA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA
12949273 GGTTTTGGAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
2 31 0.94
3 2 0.06
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (2 bp):
TA
Found at i:12949259 original size:19 final size:19
Alignment explanation
Indices: 12949235--12949271 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
12949225 GCCGATGGTT
* *
12949235 ATATATATGTTTATATATG
1 ATATATATATATATATATG
12949254 ATATATATATATATATAT
1 ATATATATATATATATAT
12949272 AGGTTTTGGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.51
Consensus pattern (19 bp):
ATATATATATATATATATG
Found at i:12964817 original size:14 final size:15
Alignment explanation
Indices: 12964793--12964821 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
12964783 TTTTGGAGAA
12964793 ATATCCAAGGAAATG
1 ATATCCAAGGAAATG
12964808 ATAT-CAAGGAAATG
1 ATATCCAAGGAAATG
12964822 TAATCTATGG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.48, C:0.10, G:0.21, T:0.21
Consensus pattern (15 bp):
ATATCCAAGGAAATG
Found at i:12965892 original size:19 final size:19
Alignment explanation
Indices: 12965854--12965892 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
12965844 AAATTTTTGA
* **
12965854 AATAAAATAATTTTTTATT
1 AATAAAATAATATTAAATT
12965873 AATAAAATAATATTAAATT
1 AATAAAATAATATTAAATT
12965892 A
1 A
12965893 TTAATATTTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (19 bp):
AATAAAATAATATTAAATT
Found at i:12966476 original size:18 final size:16
Alignment explanation
Indices: 12966441--12966479 Score: 51
Period size: 18 Copynumber: 2.3 Consensus size: 16
12966431 CCAAAACCCT
12966441 AAAAGAAGAAGAAAGA
1 AAAAGAAGAAGAAAGA
*
12966457 AAAAGAGAGAAAGGAAGA
1 AAAAGA-AG-AAGAAAGA
12966475 AAAAG
1 AAAAG
12966480 CTTGGTTTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 6 0.30
17 2 0.10
18 12 0.60
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (16 bp):
AAAAGAAGAAGAAAGA
Found at i:12968945 original size:63 final size:63
Alignment explanation
Indices: 12968840--12968994 Score: 193
Period size: 63 Copynumber: 2.5 Consensus size: 63
12968830 TTAGTATCGG
* * * * * * *
12968840 CATGTGCAATGCCCACTCCGCACATGCACGGTAGTAATTATCGCAACATCGTCATTCAACTAA
1 CATGTGCACTACCCACTCCGCACATGCACAGTAGTAACTATCGAAACATCATCATTCAACCAA
* * * *
12968903 CATGTGCACTACCCACTCCACACATGCACAGTTGTAACTATCGAAACCTCATCATTCAACCAG
1 CATGTGCACTACCCACTCCGCACATGCACAGTAGTAACTATCGAAACATCATCATTCAACCAA
* *
12968966 CAAGTGCACTACCCACTCTGCACATGCAC
1 CATGTGCACTACCCACTCCGCACATGCAC
12968995 GGTTACATCC
Statistics
Matches: 78, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
63 78 1.00
ACGTcount: A:0.30, C:0.34, G:0.14, T:0.22
Consensus pattern (63 bp):
CATGTGCACTACCCACTCCGCACATGCACAGTAGTAACTATCGAAACATCATCATTCAACCAA
Found at i:12970088 original size:15 final size:15
Alignment explanation
Indices: 12970048--12970092 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 15
12970038 TCCTTCCTTC
**
12970048 TTCTTTCTCCTCTCT
1 TTCTTTCTTTTCTCT
12970063 TTCTTTCTTTTCTCT
1 TTCTTTCTTTTCTCT
*
12970078 TTCTTT-TTTTTTCT
1 TTCTTTCTTTTCTCT
12970092 T
1 T
12970093 CCTCCTCTCG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
14 8 0.30
15 19 0.70
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (15 bp):
TTCTTTCTTTTCTCT
Found at i:12977732 original size:39 final size:39
Alignment explanation
Indices: 12977678--12977756 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
12977668 TAAAGGGGTA
12977678 AGAACTAGAGCTAAAGTTCAAAATGTTTTGTGAGTATGT
1 AGAACTAGAGCTAAAGTTCAAAATGTTTTGTGAGTATGT
12977717 AGAACTAGAGCTAAAGTTCAAAATGTTTTGTGAGTATGT
1 AGAACTAGAGCTAAAGTTCAAAATGTTTTGTGAGTATGT
12977756 A
1 A
12977757 ATCTTTATCT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.37, C:0.08, G:0.23, T:0.33
Consensus pattern (39 bp):
AGAACTAGAGCTAAAGTTCAAAATGTTTTGTGAGTATGT
Found at i:12982060 original size:2 final size:2
Alignment explanation
Indices: 12982053--12982078 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
12982043 CATTATGTTG
12982053 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
12982079 GTTGTGCATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:12989399 original size:2 final size:2
Alignment explanation
Indices: 12989392--12989424 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
12989382 TTTAATTATG
12989392 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
12989425 GTTTGTGAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:12992095 original size:20 final size:21
Alignment explanation
Indices: 12992051--12992103 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
12992041 ACTGCTTTCA
***
12992051 ATCTATCAATAGATGTTCTTT
1 ATCTATCAATAGATAAGCTTT
12992072 ATCTATCAATAGATAAGC-TT
1 ATCTATCAATAGATAAGCTTT
12992092 ATCTATCGAATA
1 ATCTATC-AATA
12992104 ATGAACAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 9 0.32
21 19 0.68
ACGTcount: A:0.36, C:0.15, G:0.09, T:0.40
Consensus pattern (21 bp):
ATCTATCAATAGATAAGCTTT
Found at i:12993557 original size:20 final size:21
Alignment explanation
Indices: 12993534--12993579 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
12993524 TATTTCTATT
12993534 TAAACTTATAATGC-TAAA-TA
1 TAAAC-TATAATGCATAAAGTA
12993554 TAAAACTATAATGCATAAAGTA
1 T-AAACTATAATGCATAAAGTA
12993576 TAAA
1 TAAA
12993580 AAAATTAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
20 9 0.39
21 11 0.48
22 3 0.13
ACGTcount: A:0.54, C:0.09, G:0.07, T:0.30
Consensus pattern (21 bp):
TAAACTATAATGCATAAAGTA
Found at i:12993992 original size:27 final size:27
Alignment explanation
Indices: 12993963--12994050 Score: 97
Period size: 31 Copynumber: 3.1 Consensus size: 27
12993953 GACAAAATCA
*
12993963 TTTAAAATATATTTAATAAATAAATAAT
1 TTTAAAA-ATATATAATAAATAAATAAT
* *
12993991 TTTAAAAAAATATGAATAAAAAATAAAAAAT
1 TTT--AAAAATAT--ATAATAAATAAATAAT
12994022 TTTAAAAATATATAATAAATAAA-AAT
1 TTTAAAAATATATAATAAATAAATAAT
12994048 TTT
1 TTT
12994051 TCAAATTTTT
Statistics
Matches: 52, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
26 6 0.12
27 11 0.21
28 3 0.06
29 12 0.23
30 4 0.08
31 16 0.31
ACGTcount: A:0.62, C:0.00, G:0.01, T:0.36
Consensus pattern (27 bp):
TTTAAAAATATATAATAAATAAATAAT
Found at i:12994051 original size:27 final size:27
Alignment explanation
Indices: 12993963--12994051 Score: 97
Period size: 27 Copynumber: 3.1 Consensus size: 27
12993953 GACAAAATCA
*
12993963 TTTAAAATATATTTAATAAATAAATAATT
1 TTTAAAA-ATATATAATAAATAAA-AATT
* * *
12993992 TTAAAAAAATATGAATAAAAAATAAAAAAT
1 TT-TAAAAATAT--ATAATAAATAAAAATT
12994022 TTTAAAAATATATAATAAATAAAAATT
1 TTTAAAAATATATAATAAATAAAAATT
12994049 TTT
1 TTT
12994052 CAAATTTTTA
Statistics
Matches: 50, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
27 17 0.34
29 14 0.28
30 9 0.18
31 10 0.20
ACGTcount: A:0.62, C:0.00, G:0.01, T:0.37
Consensus pattern (27 bp):
TTTAAAAATATATAATAAATAAAAATT
Found at i:12995757 original size:43 final size:43
Alignment explanation
Indices: 12995692--12995858 Score: 253
Period size: 43 Copynumber: 3.9 Consensus size: 43
12995682 CCCTCAACTG
*
12995692 GGTCATCATCAGCTCATGTGCACTGCTACACCGCACATGGATA
1 GGTCATCATCAGCTCATGTGCACTCCTACACCGCACATGGATA
* * *
12995735 GGTCGTCATCAGCTCATGTGCACTCCTACACTGCACATGGATG
1 GGTCATCATCAGCTCATGTGCACTCCTACACCGCACATGGATA
* * * *
12995778 GGTCGTCATCAGCTCATGTGCATTCCTACACCGCACATAGCTA
1 GGTCATCATCAGCTCATGTGCACTCCTACACCGCACATGGATA
*
12995821 GGTCATCATCAGCTCATGTGCACTCTTACACCGCACAT
1 GGTCATCATCAGCTCATGTGCACTCCTACACCGCACAT
12995859 AGCTGGGTCA
Statistics
Matches: 112, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 112 1.00
ACGTcount: A:0.23, C:0.32, G:0.20, T:0.25
Consensus pattern (43 bp):
GGTCATCATCAGCTCATGTGCACTCCTACACCGCACATGGATA
Found at i:13001669 original size:39 final size:39
Alignment explanation
Indices: 13001583--13001670 Score: 90
Period size: 39 Copynumber: 2.3 Consensus size: 39
13001573 AAAGAATCTC
13001583 GTTGCAGCGAAATTGTAACCCAGAAACAGAAGGTTTCTT
1 GTTGCAGCGAAATTGTAACCCAGAAACAGAAGGTTTCTT
* * * ** *
13001622 GCTACAGCGAAATT-TCACTGATGAAACAG-AGAGTTTTTT
1 GTTGCAGCGAAATTGTAACCCA-GAAACAGAAG-GTTTCTT
13001661 GTTGCAGCGA
1 GTTGCAGCGA
13001671 GAAGCTACAG
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
38 6 0.15
39 33 0.85
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (39 bp):
GTTGCAGCGAAATTGTAACCCAGAAACAGAAGGTTTCTT
Found at i:13008472 original size:38 final size:40
Alignment explanation
Indices: 13008379--13008479 Score: 125
Period size: 38 Copynumber: 2.6 Consensus size: 40
13008369 CCGGCTCATA
*
13008379 TACATCCCCCCACATCGTGCACATAGCCGACACCATCGTG
1 TACATCCCCCCACATCGTGCACATAGCAGACACCATCGTG
* * ** *
13008419 TGCATCCCCCCACATCGTGCACA-ATCAG-TGCCATTGTG
1 TACATCCCCCCACATCGTGCACATAGCAGACACCATCGTG
*
13008457 TACATCCCCTCACATCGTGCACA
1 TACATCCCCCCACATCGTGCACA
13008480 CGGGCACTAT
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
38 28 0.53
39 3 0.06
40 22 0.42
ACGTcount: A:0.24, C:0.41, G:0.15, T:0.21
Consensus pattern (40 bp):
TACATCCCCCCACATCGTGCACATAGCAGACACCATCGTG
Found at i:13011588 original size:43 final size:43
Alignment explanation
Indices: 13011527--13011622 Score: 156
Period size: 43 Copynumber: 2.2 Consensus size: 43
13011517 CCTCACCCTA
* * *
13011527 ACACCGCACATGGTTGGGTCATCATCATCTCATGTGCACTCCT
1 ACACCGCACAAGGCTGGGTCATCATCAACTCATGTGCACTCCT
13011570 ACACCGCACAAGGCTGGGTCATCATCAACTCATGTGCACTCCT
1 ACACCGCACAAGGCTGGGTCATCATCAACTCATGTGCACTCCT
*
13011613 ACACTGCACA
1 ACACCGCACA
13011623 CTCCTAAACC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 49 1.00
ACGTcount: A:0.25, C:0.34, G:0.18, T:0.23
Consensus pattern (43 bp):
ACACCGCACAAGGCTGGGTCATCATCAACTCATGTGCACTCCT
Found at i:13011680 original size:43 final size:43
Alignment explanation
Indices: 13011620--13011735 Score: 178
Period size: 43 Copynumber: 2.7 Consensus size: 43
13011610 CCTACACTGC
* * *
13011620 ACACTCCTAAACCGCACATGGCTGGGTCATCATCAGCTCATGT
1 ACACTCCTACACCGCACATAGCTGGGTCATCATCAACTCATGT
* *
13011663 GCACTCCTACATCGCACATAGCTGGGTCATCATCAACTCATGT
1 ACACTCCTACACCGCACATAGCTGGGTCATCATCAACTCATGT
*
13011706 ACACTCCTACACCGCACATAGTTGGGTCAT
1 ACACTCCTACACCGCACATAGCTGGGTCAT
13011736 AATTATCACA
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 65 1.00
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.24
Consensus pattern (43 bp):
ACACTCCTACACCGCACATAGCTGGGTCATCATCAACTCATGT
Found at i:13011680 original size:58 final size:58
Alignment explanation
Indices: 13011563--13011673 Score: 195
Period size: 58 Copynumber: 1.9 Consensus size: 58
13011553 ATCTCATGTG
*
13011563 CACTCCTACACCGCACAAGGCTGGGTCATCATCAACTCATGTGCACTCCTACACTGCA
1 CACTCCTAAACCGCACAAGGCTGGGTCATCATCAACTCATGTGCACTCCTACACTGCA
* *
13011621 CACTCCTAAACCGCACATGGCTGGGTCATCATCAGCTCATGTGCACTCCTACA
1 CACTCCTAAACCGCACAAGGCTGGGTCATCATCAACTCATGTGCACTCCTACA
13011674 TCGCACATAG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
58 50 1.00
ACGTcount: A:0.25, C:0.37, G:0.16, T:0.22
Consensus pattern (58 bp):
CACTCCTAAACCGCACAAGGCTGGGTCATCATCAACTCATGTGCACTCCTACACTGCA
Found at i:13011704 original size:101 final size:102
Alignment explanation
Indices: 13011523--13011723 Score: 334
Period size: 101 Copynumber: 2.0 Consensus size: 102
13011513 CCAGCCTCAC
* *
13011523 CCTAACACCGCACATGGTTGGGTCATCATCATCTCATGTGCACTCCTACACCGCACAAGGCTGGG
1 CCTAACACCGCACATGGCTGGGTCATCATCAGCTCATGTGCACTCCTACACCGCACAAGGCTGGG
* *
13011588 TCATCATCAACTCATGTGCACTCCTACACTGCACACT
66 TCATCATCAACTCATGTACACTCCTACACCGCACACT
*
13011625 CCTAA-ACCGCACATGGCTGGGTCATCATCAGCTCATGTGCACTCCTACATCGCACATA-GCTGG
1 CCTAACACCGCACATGGCTGGGTCATCATCAGCTCATGTGCACTCCTACACCGCACA-AGGCTGG
13011688 GTCATCATCAACTCATGTACACTCCTACACCGCACA
65 GTCATCATCAACTCATGTACACTCCTACACCGCACA
13011724 TAGTTGGGTC
Statistics
Matches: 93, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
101 87 0.94
102 6 0.06
ACGTcount: A:0.25, C:0.35, G:0.16, T:0.23
Consensus pattern (102 bp):
CCTAACACCGCACATGGCTGGGTCATCATCAGCTCATGTGCACTCCTACACCGCACAAGGCTGGG
TCATCATCAACTCATGTACACTCCTACACCGCACACT
Found at i:13015037 original size:33 final size:33
Alignment explanation
Indices: 13015000--13015086 Score: 140
Period size: 33 Copynumber: 2.7 Consensus size: 33
13014990 ATGAGTAGAG
13015000 ACATAAAAGTTCAACTTCAAGTTATAAGCAACA
1 ACATAAAAGTTCAACTTCAAGTTATAAGCAACA
*
13015033 ACATAAAAGTTCAACTTTAAGTTATAAGCAACA
1 ACATAAAAGTTCAACTTCAAGTTATAAGCAACA
* *
13015066 ACATAGAAGTT-AAATTCAAGT
1 ACATAAAAGTTCAACTTCAAGT
13015087 GCAACTGAAC
Statistics
Matches: 50, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
32 8 0.16
33 42 0.84
ACGTcount: A:0.48, C:0.15, G:0.10, T:0.26
Consensus pattern (33 bp):
ACATAAAAGTTCAACTTCAAGTTATAAGCAACA
Found at i:13017730 original size:2 final size:2
Alignment explanation
Indices: 13017723--13017750 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
13017713 NNNNNNNNNN
13017723 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
13017751 CATGTATAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:13034240 original size:7 final size:7
Alignment explanation
Indices: 13034222--13034261 Score: 55
Period size: 7 Copynumber: 5.6 Consensus size: 7
13034212 ATTAAGTTAG
13034222 GTTATATT
1 GTTAT-TT
13034230 GTTATTT
1 GTTATTT
13034237 GTTA-TT
1 GTTATTT
13034243 GTTAATTT
1 GTT-ATTT
13034251 GTTATTT
1 GTTATTT
13034258 GTTA
1 GTTA
13034262 ATATGTTAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
6 5 0.17
7 15 0.50
8 10 0.33
ACGTcount: A:0.20, C:0.00, G:0.15, T:0.65
Consensus pattern (7 bp):
GTTATTT
Found at i:13034259 original size:15 final size:15
Alignment explanation
Indices: 13034222--13034269 Score: 64
Period size: 15 Copynumber: 3.3 Consensus size: 15
13034212 ATTAAGTTAG
13034222 GTTATATTGTT-ATTT
1 GTTAT-TTGTTAATTT
13034237 GTTA-TTGTTAATTT
1 GTTATTTGTTAATTT
*
13034251 GTTATTTGTTAATAT
1 GTTATTTGTTAATTT
13034266 GTTA
1 GTTA
13034270 GATTTTAGTT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
13 5 0.17
14 8 0.27
15 17 0.57
ACGTcount: A:0.23, C:0.00, G:0.15, T:0.62
Consensus pattern (15 bp):
GTTATTTGTTAATTT
Found at i:13034442 original size:13 final size:13
Alignment explanation
Indices: 13034424--13034454 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
13034414 TTTATTACTT
13034424 ATTAATATATTAC
1 ATTAATATATTAC
*
13034437 ATTAATATATTAT
1 ATTAATATATTAC
13034450 ATTAA
1 ATTAA
13034455 ACAAGTTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (13 bp):
ATTAATATATTAC
Found at i:13042044 original size:5 final size:5
Alignment explanation
Indices: 13042037--13042076 Score: 62
Period size: 5 Copynumber: 8.0 Consensus size: 5
13042027 CTATTCAATC
* *
13042037 TAACC TAACT TAACT TAACT TAACT TATCT TAACT TAACT
1 TAACT TAACT TAACT TAACT TAACT TAACT TAACT TAACT
13042077 GGACTTGGGG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (5 bp):
TAACT
Found at i:13042142 original size:15 final size:15
Alignment explanation
Indices: 13042122--13042163 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
13042112 TAAAACAACC
13042122 TTAAAATCAAAAACT
1 TTAAAATCAAAAACT
* *
13042137 TTAAAATCCAAAGCT
1 TTAAAATCAAAAACT
13042152 TTAAAATCAAAA
1 TTAAAATCAAAA
13042164 TATCTGATCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.57, C:0.14, G:0.02, T:0.26
Consensus pattern (15 bp):
TTAAAATCAAAAACT
Found at i:13044759 original size:27 final size:27
Alignment explanation
Indices: 13044708--13044759 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 27
13044698 ATGTCCTGGT
*
13044708 GGTGGAAAATTACAATTTTGCCCCTAG
1 GGTGGAAAATTACAATTTTGACCCTAG
*
13044735 GGTGGCAAAATTACCATTTT-ACCCT
1 GGTGG-AAAATTACAATTTTGACCCT
13044760 TTTTCTCCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 9 0.41
28 13 0.59
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (27 bp):
GGTGGAAAATTACAATTTTGACCCTAG
Found at i:13049881 original size:80 final size:78
Alignment explanation
Indices: 13049703--13049904 Score: 194
Period size: 79 Copynumber: 2.5 Consensus size: 78
13049693 ATCTATAAGG
* * * * ***
13049703 TTATGACATGTATGCCATGAAATATATGTGTTAGGAATGTCATGTACATGATGGGCTAAACATGA
1 TTATGAAATGTATGCCATGAGATGTAGGTGTT-GGAATGTCATGTACATGACAAGCTAAACATGA
*
13049768 GATGAATTATGAGA
65 GATGAATTACGAGA
* * *
13049782 TTAT-AACATGAATGCCATGAGATGTAGGTGTTGGTTATGTCATGTACACT-ACAAGCTAAGCAT
1 TTATGAA-ATGTATGCCATGAGATGTAGGTGTTGG-AATGTCATGTACA-TGACAAGCTAAACAT
* *
13049845 GGGAATTAATTACGAGA
63 GAG-ATGAATTACGAGA
*
13049862 TTATGAAATGTATGCCATGAGATGT-GTGTGTTGAGAATTTCAT
1 TTATGAAATGTATGCCATGAGATGTAG-GTGTTG-GAATGTCAT
13049905 ATATACTATG
Statistics
Matches: 100, Mismatches: 16, Indels: 13
0.78 0.12 0.10
Matches are distributed among these distances:
78 3 0.03
79 49 0.49
80 45 0.45
81 3 0.03
ACGTcount: A:0.33, C:0.10, G:0.24, T:0.33
Consensus pattern (78 bp):
TTATGAAATGTATGCCATGAGATGTAGGTGTTGGAATGTCATGTACATGACAAGCTAAACATGAG
ATGAATTACGAGA
Found at i:13054335 original size:42 final size:41
Alignment explanation
Indices: 13054275--13054425 Score: 203
Period size: 42 Copynumber: 3.6 Consensus size: 41
13054265 ATTTGATGTG
13054275 GACCCGGCTATGTGCGAGTATGAGTGCACATAAGCCGTTGCT
1 GACCCGGCTATGTGCGAGTA-GAGTGCACATAAGCCGTTGCT
* * *
13054317 GACCCGACTATGTACGAGTAGAAGTGCACATAAGCTGTTGCT
1 GACCCGGCTATGTGCGAGTAG-AGTGCACATAAGCCGTTGCT
* *
13054359 GACCCGGCTATGTGTGAGTGGGAGTGCACATAAGCCGTTGCT
1 GACCCGGCTATGTGCGAGT-AGAGTGCACATAAGCCGTTGCT
* *
13054401 GACCCAGCTATATGCGAGTGAGAGT
1 GACCCGGCTATGTGCGAGT-AGAGT
13054426 ATGCATAAGC
Statistics
Matches: 95, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
41 1 0.01
42 93 0.98
43 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (41 bp):
GACCCGGCTATGTGCGAGTAGAGTGCACATAAGCCGTTGCT
Found at i:13054419 original size:84 final size:84
Alignment explanation
Indices: 13054275--13054441 Score: 230
Period size: 84 Copynumber: 2.0 Consensus size: 84
13054265 ATTTGATGTG
* *
13054275 GACCCGGCTATGTGCGAGTATGAGTGCACATAAGCCGTTGCTGACCCGACTATGTACGAGT-AGA
1 GACCCGGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCTGACCCGACTATATACGAGTGAG-
*
13054339 AGTGCACATAAGCTGTTGCT
65 AGTACACATAAGCTGTTGCT
* * *
13054359 GACCCGGCTATGTGTGAGTGGGAGTGCACATAAGCCGTTGCTGACCC-AGCTATATGCGAGTGAG
1 GACCCGGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCTGACCCGA-CTATATACGAGTGAG
**
13054423 AGTATGCATAAGCTGTTGC
65 AGTACACATAAGCTGTTGC
13054442 ATATGAGATG
Statistics
Matches: 73, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
83 1 0.01
84 70 0.96
85 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.24
Consensus pattern (84 bp):
GACCCGGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCTGACCCGACTATATACGAGTGAGA
GTACACATAAGCTGTTGCT
Found at i:13057752 original size:42 final size:42
Alignment explanation
Indices: 13057706--13057804 Score: 135
Period size: 42 Copynumber: 2.4 Consensus size: 42
13057696 TGTAGAGGTG
* * *
13057706 CACATAAGCCGTTGTTGACCCGGCTATGTGAGAGTGGGAGTA
1 CACATAAGCCGTTGCTAACCCGACTATGTGAGAGTGGGAGTA
* * *
13057748 CACATAAACCGTTGCTAACCCGACTATGTGCGAGTGGGAGTG
1 CACATAAGCCGTTGCTAACCCGACTATGTGAGAGTGGGAGTA
*
13057790 CGCATAAGCCGTTGC
1 CACATAAGCCGTTGC
13057805 ATATGAGATG
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.24, C:0.23, G:0.30, T:0.22
Consensus pattern (42 bp):
CACATAAGCCGTTGCTAACCCGACTATGTGAGAGTGGGAGTA
Found at i:13057848 original size:2 final size:2
Alignment explanation
Indices: 13057841--13057874 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
13057831 GTATATGATG
*
13057841 AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
13057875 GGTATATGGT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:13068562 original size:198 final size:197
Alignment explanation
Indices: 13068224--13068619 Score: 756
Period size: 198 Copynumber: 2.0 Consensus size: 197
13068214 GTATGACACC
13068224 ATACACATAATTATTCGTTGTTTTCTAGTGTTCCACAATTCCTTAGTATTCACAACTACTAGTCT
1 ATACACATAATTATTCGTTGTTTTCTAGTGTTCCACAATTCCTTAGTATTCACAACTACTAGTCT
13068289 TCTTTGTCTTACAACTCGTATAGTCCAATCACTTCAACTTAAAATCGTCATAAAATTAATCCACC
66 TCTTTGTCTTACAACTCGTATAGTCCAATCACTTCAACTTAAAATCGTCATAAAATTAATCCACC
13068354 TATATCAACATTTTATGCTTATCTTATTATTAGTTCAAAAGCTTCATGATCATGGAAACTACAAT
131 TATATCAACATTTTATGCTTATCTTATTATTAGTTCAAAAGCTTCATGATCATGGAAACTACAAT
13068419 TT
196 TT
13068421 NATACACATAATTATTCGTTGTTTTCTAGTGTTCCACAATTCCTTAGTATTCACAACTACTAGTC
1 -ATACACATAATTATTCGTTGTTTTCTAGTGTTCCACAATTCCTTAGTATTCACAACTACTAGTC
13068486 TTCTTTGTCTTACAACTCGTATAGTCCAATCACTTCAACTTAAAATCGTCATAAAATTAATCCAC
65 TTCTTTGTCTTACAACTCGTATAGTCCAATCACTTCAACTTAAAATCGTCATAAAATTAATCCAC
* * *
13068551 CTATATCAACATTTTATGCTTATCTTATTATTAGTTCCAGAGTTTCATGATCATGGAAACTACAA
130 CTATATCAACATTTTATGCTTATCTTATTATTAGTTCAAAAGCTTCATGATCATGGAAACTACAA
13068616 TTT
195 TTT
13068619 A
1 A
13068620 CAAAACTAGC
Statistics
Matches: 195, Mismatches: 3, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
197 1 0.01
198 194 0.99
ACGTcount: A:0.32, C:0.21, G:0.08, T:0.39
Consensus pattern (197 bp):
ATACACATAATTATTCGTTGTTTTCTAGTGTTCCACAATTCCTTAGTATTCACAACTACTAGTCT
TCTTTGTCTTACAACTCGTATAGTCCAATCACTTCAACTTAAAATCGTCATAAAATTAATCCACC
TATATCAACATTTTATGCTTATCTTATTATTAGTTCAAAAGCTTCATGATCATGGAAACTACAAT
TT
Found at i:13069778 original size:22 final size:22
Alignment explanation
Indices: 13069728--13069778 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
13069718 AAGCTATGTG
* *
13069728 CTCTGATCTTTAAAACTAAAAG
1 CTCTGATCTTTAAAACCAAAAA
*
13069750 CTTTGATCTTTAAAACCAAAAA
1 CTCTGATCTTTAAAACCAAAAA
13069772 CTCTGAT
1 CTCTGAT
13069779 ATCACTATAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.33
Consensus pattern (22 bp):
CTCTGATCTTTAAAACCAAAAA
Found at i:13069825 original size:18 final size:18
Alignment explanation
Indices: 13069798--13069841 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
13069788 ATTGTCACGA
*
13069798 CCCGTTACTCCCCTCGAG
1 CCCGTGACTCCCCTCGAG
*
13069816 CCCGTGACTCCCTTCGAG
1 CCCGTGACTCCCCTCGAG
13069834 CCCGTGAC
1 CCCGTGAC
13069842 AACCGTTGCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.11, C:0.48, G:0.20, T:0.20
Consensus pattern (18 bp):
CCCGTGACTCCCCTCGAG
Found at i:13073298 original size:21 final size:21
Alignment explanation
Indices: 13073272--13073317 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
13073262 ATCTCAAATA
* *
13073272 TATCGATACGTGTTCATGATG
1 TATCGATACATGTTCATAATG
13073293 TATCGATACATGTTCATAATG
1 TATCGATACATGTTCATAATG
13073314 TATC
1 TATC
13073318 AATGCAATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.39
Consensus pattern (21 bp):
TATCGATACATGTTCATAATG
Found at i:13073365 original size:20 final size:20
Alignment explanation
Indices: 13073336--13073374 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
13073326 TTTTTCAACA
13073336 CCAAAAGTATCGATACATTG
1 CCAAAAGTATCGATACATTG
*
13073356 CCAAATGTATCGATACATT
1 CCAAAAGTATCGATACATT
13073375 TCGTTGATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.38, C:0.21, G:0.13, T:0.28
Consensus pattern (20 bp):
CCAAAAGTATCGATACATTG
Found at i:13074666 original size:64 final size:64
Alignment explanation
Indices: 13074544--13074688 Score: 182
Period size: 64 Copynumber: 2.3 Consensus size: 64
13074534 GGTGTGAGCC
* ** ** *
13074544 AACATTCCACACGTGGTGAATGTGTCTAGTATAATGGATGAAGGTGTTTCACACGGTGTGAAGT
1 AACATTCCACACGTGGTCAATACGTCTAGTATAATGGATGAAGGCATTCCACACGGTGTGAAGT
* * * * *
13074608 GACATTACACACGTGGTCAATACGTCTAGTATAATGGATGATGGCATTCCACATGGTGTGAGGT
1 AACATTCCACACGTGGTCAATACGTCTAGTATAATGGATGAAGGCATTCCACACGGTGTGAAGT
*
13074672 AATATTCCACACGTGGT
1 AACATTCCACACGTGGT
13074689 GCGAATGCCC
Statistics
Matches: 67, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
64 67 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (64 bp):
AACATTCCACACGTGGTCAATACGTCTAGTATAATGGATGAAGGCATTCCACACGGTGTGAAGT
Found at i:13076722 original size:74 final size:73
Alignment explanation
Indices: 13076513--13076724 Score: 212
Period size: 74 Copynumber: 2.9 Consensus size: 73
13076503 ATTGCAATAT
* * *
13076513 AGAGAATACTTAATCGACTAAGAAGTATGGTTAGCCAATTAAAATCTCATGGTCA-AAAATTTGA
1 AGAGAAAACTTAATCGACTAAGAAGTATGGTTAGCCAACTAAAAGCTCAT-GTCAGAAAATTTGA
* *
13076577 TTGCGAGAC
65 TTACAAGAC
* * * * * **
13076586 AGAGAAAACTTAGTCGACTAAAAAGTATTGTTAGCCAGCTAACAGCTCAT-TACTAGCGAATTTG
1 AGAGAAAACTTAATCGACTAAGAAGTATGGTTAGCCAACTAAAAGCTCATGT-C-AGAAAATTTG
13076650 ATTACAAGAC
64 ATTACAAGAC
* * * * * *
13076660 AGAGAAGACTTAATCAACTAAGAAGCATGGTTAGTCAACTAAGAGCACACTGTCAGAAAATTTGA
1 AGAGAAAACTTAATCGACTAAGAAGTATGGTTAGCCAACTAAAAGCTCA-TGTCAGAAAATTTGA
13076725 ATTTAAGCAC
Statistics
Matches: 110, Mismatches: 24, Indels: 9
0.77 0.17 0.06
Matches are distributed among these distances:
71 1 0.01
72 1 0.01
73 43 0.39
74 62 0.56
75 2 0.02
76 1 0.01
ACGTcount: A:0.41, C:0.16, G:0.19, T:0.25
Consensus pattern (73 bp):
AGAGAAAACTTAATCGACTAAGAAGTATGGTTAGCCAACTAAAAGCTCATGTCAGAAAATTTGAT
TACAAGAC
Found at i:13084477 original size:2 final size:2
Alignment explanation
Indices: 13084470--13084534 Score: 66
Period size: 2 Copynumber: 34.5 Consensus size: 2
13084460 CAACATTATT
* * * *
13084470 TA TA TA TA TA TA TA TA TA TA TA TA TN CA CA -A CA T- TA T- TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
13084509 T- TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
13084535 TAACATAATG
Statistics
Matches: 55, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
1 4 0.07
2 51 0.93
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:13084514 original size:38 final size:37
Alignment explanation
Indices: 13084458--13084534 Score: 127
Period size: 40 Copynumber: 2.0 Consensus size: 37
13084448 AATATCATTA
13084458 CACAACATTATTTATATATATATATATATATATATAT
1 CACAACATTATTTATATATATATATATATATATATAT
13084495 NCACAACATTATTATTATATATATATATATATATATATAT
1 -CACAACATTA-T-TTATATATATATATATATATATATAT
13084535 TAACATAATG
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
38 10 0.27
39 1 0.03
40 26 0.70
ACGTcount: A:0.45, C:0.08, G:0.00, T:0.45
Consensus pattern (37 bp):
CACAACATTATTTATATATATATATATATATATATAT
Found at i:13088390 original size:2 final size:2
Alignment explanation
Indices: 13088378--13088431 Score: 99
Period size: 2 Copynumber: 27.0 Consensus size: 2
13088368 TGTTATGTTG
*
13088378 AT AT CT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
13088420 AT AT AT AT AT AT
1 AT AT AT AT AT AT
13088432 NNNNNNNNNN
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:13089362 original size:19 final size:19
Alignment explanation
Indices: 13089322--13089363 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
13089312 AGTTCTAAGG
* *
13089322 AATAAATGAATGAGGGTAA
1 AATAAATGAATGAAGATAA
13089341 AATAAATGAA-GAAGATATA
1 AATAAATGAATGAAGATA-A
13089360 AATA
1 AATA
13089364 CTAATAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.60, C:0.00, G:0.19, T:0.21
Consensus pattern (19 bp):
AATAAATGAATGAAGATAA
Found at i:13093353 original size:35 final size:35
Alignment explanation
Indices: 13093306--13093427 Score: 124
Period size: 35 Copynumber: 3.6 Consensus size: 35
13093296 AGTTGATCCC
*
13093306 GTGAAAAACCATTGTTAAAGGTTGTGGCTGAGCCT
1 GTGAAAAACCATTGTTAAAGGTTGTGGCTGAGCTT
* * * *
13093341 GTGAAAATCCATT-TT--AGGTTTTGGTTGATCTT
1 GTGAAAAACCATTGTTAAAGGTTGTGGCTGAGCTT
* ** *
13093373 GTGAAAAACTATCATTAAAGGTTGTGGCTAAGCTT
1 GTGAAAAACCATTGTTAAAGGTTGTGGCTGAGCTT
* *
13093408 GTGAAAAGCCATTGTAAAAG
1 GTGAAAAACCATTGTTAAAG
13093428 CTTGGTGGAA
Statistics
Matches: 67, Mismatches: 17, Indels: 6
0.74 0.19 0.07
Matches are distributed among these distances:
32 23 0.34
33 2 0.03
34 2 0.03
35 40 0.60
ACGTcount: A:0.31, C:0.11, G:0.25, T:0.33
Consensus pattern (35 bp):
GTGAAAAACCATTGTTAAAGGTTGTGGCTGAGCTT
Found at i:13093376 original size:32 final size:32
Alignment explanation
Indices: 13093285--13093381 Score: 95
Period size: 32 Copynumber: 2.9 Consensus size: 32
13093275 GAAAAGTTAG
* * *
13093285 TTTTGGGTTTTAGTTGATCCCGTGAAAAACCA
1 TTTTAGGTTTTGGTTGATCCTGTGAAAAACCA
* * * *
13093317 TTGTTAAAGGTTGTGGCTGAGCCTGTGAAAATCCA
1 TT-TT--AGGTTTTGGTTGATCCTGTGAAAAACCA
*
13093352 TTTTAGGTTTTGGTTGATCTTGTGAAAAAC
1 TTTTAGGTTTTGGTTGATCCTGTGAAAAAC
13093382 TATCATTAAA
Statistics
Matches: 50, Mismatches: 12, Indels: 6
0.74 0.18 0.09
Matches are distributed among these distances:
32 23 0.46
33 2 0.04
34 2 0.04
35 23 0.46
ACGTcount: A:0.25, C:0.12, G:0.25, T:0.38
Consensus pattern (32 bp):
TTTTAGGTTTTGGTTGATCCTGTGAAAAACCA
Found at i:13093377 original size:67 final size:67
Alignment explanation
Indices: 13093285--13093420 Score: 182
Period size: 67 Copynumber: 2.0 Consensus size: 67
13093275 GAAAAGTTAG
* ** * *
13093285 TTTTGGGTTTTAGTTGATCCCGTGAAAAACCATTGTTAAAGGTTGTGGCTGAGCCTGTGAAAATC
1 TTTTAGGTTTTAGTTGATCCCGTGAAAAACCATCATTAAAGGTTGTGGCTAAGCCTGTGAAAAGC
13093350 CA
66 CA
* ** * *
13093352 TTTTAGGTTTTGGTTGATCTTGTGAAAAACTATCATTAAAGGTTGTGGCTAAGCTTGTGAAAAGC
1 TTTTAGGTTTTAGTTGATCCCGTGAAAAACCATCATTAAAGGTTGTGGCTAAGCCTGTGAAAAGC
13093417 CA
66 CA
13093419 TT
1 TT
13093421 GTAAAAGCTT
Statistics
Matches: 59, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
67 59 1.00
ACGTcount: A:0.26, C:0.12, G:0.24, T:0.37
Consensus pattern (67 bp):
TTTTAGGTTTTAGTTGATCCCGTGAAAAACCATCATTAAAGGTTGTGGCTAAGCCTGTGAAAAGC
CA
Found at i:13099366 original size:42 final size:42
Alignment explanation
Indices: 13099302--13099392 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
13099292 CATATCATCA
* *
13099302 TCATCATCAGCTCATGTGCACTCCCACACCGCACATAGTTAGG
1 TCATCATCAGCTCATGTGCACTCCCACA-CACACATAGCTAGG
*
13099345 TCAT-ATCAGCTCATGTGCACTCCCACACACACGTAGCTAGG
1 TCATCATCAGCTCATGTGCACTCCCACACACACATAGCTAGG
13099386 TCATCAT
1 TCATCAT
13099393 TATCACACAA
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
41 15 0.34
42 25 0.57
43 4 0.09
ACGTcount: A:0.26, C:0.34, G:0.15, T:0.24
Consensus pattern (42 bp):
TCATCATCAGCTCATGTGCACTCCCACACACACATAGCTAGG
Done.