Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21614486
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 1093914 characters in sequence are not A, C, G, or T
File 36 of 54
Found at i:14487552 original size:8 final size:8
Alignment explanation
Indices: 14487539--14487567 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
14487529 ACTTACTTTC
14487539 TTTTATAT
1 TTTTATAT
14487547 TTTTATAT
1 TTTTATAT
14487555 TTTTAT-T
1 TTTTATAT
14487562 TTTTAT
1 TTTTAT
14487568 TTATTTAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
7 7 0.33
8 14 0.67
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (8 bp):
TTTTATAT
Found at i:14491071 original size:113 final size:113
Alignment explanation
Indices: 14490867--14491100 Score: 389
Period size: 113 Copynumber: 2.1 Consensus size: 113
14490857 AGGATGTATC
*
14490867 GATAGATTCATGAATCTATCGATACATTCGTATGATTTTTCTTCAAATCTATCAATACATGTGTT
1 GATAGATTCATGAATCTATCGATACATTCGTATGATTTTTCTTCAAATCTATCAATACATATGTT
* *
14490932 AATGTATCTGTAGAAATTCAATAGAATACTCACTACCTCAAATCTATT
66 AATGTATCTATAGAAATTCAACAGAATACTCACTACCTCAAATCTATT
*
14490980 GATAGATTCATGAATCTATCGATACATTCGTATGATTTTTCTTCAAATCTATCATTACATATGTT
1 GATAGATTCATGAATCTATCGATACATTCGTATGATTTTTCTTCAAATCTATCAATACATATGTT
* * *
14491045 AATGTATTTATA-AATATTCAGCAGAATGCTCACTACCTCAAATCTATT
66 AATGTATCTATAGAA-ATTCAACAGAATACTCACTACCTCAAATCTATT
14491093 GATAGATT
1 GATAGATT
14491101 GGGAAATCCA
Statistics
Matches: 113, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
112 2 0.02
113 111 0.98
ACGTcount: A:0.34, C:0.16, G:0.11, T:0.39
Consensus pattern (113 bp):
GATAGATTCATGAATCTATCGATACATTCGTATGATTTTTCTTCAAATCTATCAATACATATGTT
AATGTATCTATAGAAATTCAACAGAATACTCACTACCTCAAATCTATT
Found at i:14494450 original size:60 final size:60
Alignment explanation
Indices: 14494330--14494736 Score: 450
Period size: 60 Copynumber: 6.9 Consensus size: 60
14494320 CATCATCACT
* * *
14494330 TACTCGTGGGAACTACCCACGCCA-C-TATATGAATCGGGGCTTCAAGTCCCCCTTTGCC
1 TACTCGTGGGAACTACCCACGCCACCAAATATAAATCGAGGCTTCAAGTCCCCCTTTGCC
* * * * * *
14494388 TACTCATGGGAATTACCCACGTCACTAAATATAAATCGAGGCTTCAGGTCCCCCTTTACC
1 TACTCGTGGGAACTACCCACGCCACCAAATATAAATCGAGGCTTCAAGTCCCCCTTTGCC
* * * *
14494448 TACTCGTGGGAACTACGCACGTCACAAAATATAAATCGAGGCTTC-AGATCCCCCTTTGCT
1 TACTCGTGGGAACTACCCACGCCACCAAATATAAATCGAGGCTTCAAG-TCCCCCTTTGCC
* *
14494508 TACTCGTGGGAACTACCCACGTCACCAAATATAAATCGGGGCTTCAAGTCCCCCTTTGCC
1 TACTCGTGGGAACTACCCACGCCACCAAATATAAATCGAGGCTTCAAGTCCCCCTTTGCC
* * * * * * * * * *
14494568 TACTAGTGGGATCTGCCCAAGCCCCCATATATAAATCGGGGCTTCATGTCTCACTTTGCC
1 TACTCGTGGGAACTACCCACGCCACCAAATATAAATCGAGGCTTCAAGTCCCCCTTTGCC
* * * *
14494628 TTCTCGTGGGAACTGCCCACGCCACC--ATATGAATCGAGGCTTCAAGTCCCCCTTTACC
1 TACTCGTGGGAACTACCCACGCCACCAAATATAAATCGAGGCTTCAAGTCCCCCTTTGCC
* * * * *
14494686 TACTCGTGGGAATTGCCCACACCACC--ATATGAATCGGGGCTTCAAGTCCCC
1 TACTCGTGGGAACTACCCACGCCACCAAATATAAATCGAGGCTTCAAGTCCCC
14494737 ATTTAAAATC
Statistics
Matches: 300, Mismatches: 45, Indels: 8
0.85 0.13 0.02
Matches are distributed among these distances:
58 94 0.31
59 1 0.00
60 203 0.68
61 2 0.01
ACGTcount: A:0.24, C:0.32, G:0.19, T:0.25
Consensus pattern (60 bp):
TACTCGTGGGAACTACCCACGCCACCAAATATAAATCGAGGCTTCAAGTCCCCCTTTGCC
Found at i:14495431 original size:58 final size:58
Alignment explanation
Indices: 14495356--14495499 Score: 193
Period size: 58 Copynumber: 2.5 Consensus size: 58
14495346 CCTCTTCTTA
* **
14495356 TTTTTCTTCTTTTTCTTTCTCTTCTTTCTTCTCCCTCCTCGCCA-TTCTCCCTCTCTCT
1 TTTTTCTTCTTTTTCTTTCTCTTCTTTCTTCTCCCTCCTC-ACAGAGCTCCCTCTCTCT
*
14495414 TTCTTT-TTCTTTTTCTTTCTCTTCTTTCTTCTCCCTCGTCACAGAGCTCCCTCTCTCT
1 TT-TTTCTTCTTTTTCTTTCTCTTCTTTCTTCTCCCTCCTCACAGAGCTCCCTCTCTCT
* * *
14495472 TTTTTCTTCTCTTTCTTTTTCTTTTTTC
1 TTTTTCTTCTTTTTCTTTCTCTTCTTTC
14495500 CTCTTTCTCT
Statistics
Matches: 76, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
57 5 0.07
58 68 0.89
59 3 0.04
ACGTcount: A:0.03, C:0.35, G:0.03, T:0.60
Consensus pattern (58 bp):
TTTTTCTTCTTTTTCTTTCTCTTCTTTCTTCTCCCTCCTCACAGAGCTCCCTCTCTCT
Found at i:14495446 original size:12 final size:13
Alignment explanation
Indices: 14495406--14495443 Score: 51
Period size: 12 Copynumber: 2.9 Consensus size: 13
14495396 GCCATTCTCC
14495406 CTCTCTCTTTCTTT
1 CTCT-TCTTTCTTT
*
14495420 TTCTT-TTTCTTT
1 CTCTTCTTTCTTT
14495432 CTCTTCTTTCTT
1 CTCTTCTTTCTT
14495444 CTCCCTCGTC
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
12 11 0.52
13 7 0.33
14 3 0.14
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (13 bp):
CTCTTCTTTCTTT
Found at i:14495503 original size:20 final size:21
Alignment explanation
Indices: 14495464--14495525 Score: 72
Period size: 20 Copynumber: 2.9 Consensus size: 21
14495454 ACAGAGCTCC
*
14495464 CTCTCTCTTTTTTCTTCTCTTT
1 CTCTTTCTTTTTTC-TCTCTTT
*
14495486 CTTTTTCTTTTTTC-CTCTTT
1 CTCTTTCTTTTTTCTCTCTTT
*
14495506 CTCTTTCCTTTTTCTGCTCT
1 CTCTTTCTTTTTTCT-CTCT
14495526 ACCGTGCTCT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
20 18 0.53
22 16 0.47
ACGTcount: A:0.00, C:0.31, G:0.02, T:0.68
Consensus pattern (21 bp):
CTCTTTCTTTTTTCTCTCTTT
Found at i:14495572 original size:18 final size:20
Alignment explanation
Indices: 14495532--14495579 Score: 64
Period size: 18 Copynumber: 2.5 Consensus size: 20
14495522 CTCTACCGTG
14495532 CTCTTTCTCTCCTTTATTCTT
1 CTCTTTCTCT-CTTTATTCTT
*
14495553 CTCTTTCTCT-TTT-TTTTT
1 CTCTTTCTCTCTTTATTCTT
14495571 CTCTTTCTC
1 CTCTTTCTC
14495580 CTCTCTTCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 13 0.50
19 3 0.12
21 10 0.38
ACGTcount: A:0.02, C:0.31, G:0.00, T:0.67
Consensus pattern (20 bp):
CTCTTTCTCTCTTTATTCTT
Found at i:14498127 original size:37 final size:37
Alignment explanation
Indices: 14498077--14498237 Score: 216
Period size: 37 Copynumber: 4.2 Consensus size: 37
14498067 AATGCAATAT
*
14498077 CATCATCATGTGTGCACTCCCTACTCACACACTTCAA
1 CATCATCATGTGTGCACTCCCTACTCGCACACTTCAA
* *
14498114 CATCATCACGTGTGCACTCCTTACTCGCACAC-TCTAA
1 CATCATCATGTGTGCACTCCCTACTCGCACACTTC-AA
14498151 CATCATCATGTGTGCACTTCACTCCCTACTCGCACACTTCAA
1 CATCATCATGTGTG-----CACTCCCTACTCGCACACTTCAA
**
14498193 CATCATCATGTGTGCACTCCCTACTTTCACACTTCAA
1 CATCATCATGTGTGCACTCCCTACTCGCACACTTCAA
14498230 CATCATCA
1 CATCATCA
14498238 CACAACATTA
Statistics
Matches: 110, Mismatches: 7, Indels: 14
0.84 0.05 0.11
Matches are distributed among these distances:
36 2 0.02
37 73 0.66
42 33 0.30
43 2 0.02
ACGTcount: A:0.25, C:0.37, G:0.09, T:0.29
Consensus pattern (37 bp):
CATCATCATGTGTGCACTCCCTACTCGCACACTTCAA
Found at i:14498181 original size:79 final size:79
Alignment explanation
Indices: 14498091--14498237 Score: 233
Period size: 79 Copynumber: 1.9 Consensus size: 79
14498081 ATCATGTGTG
*
14498091 CACTCCCTACTCACACACTTCAACATCATCACGTGTGCACTCCTTACTCGCACAC-TCTAACATC
1 CACTCCCTACTCACACACTTCAACATCATCACGTGTGCACTCCCTACTCGCACACTTC-AACATC
14498155 ATCATGTGTGCACTT
65 ATCATGTGTGCACTT
* * **
14498170 CACTCCCTACTCGCACACTTCAACATCATCATGTGTGCACTCCCTACTTTCACACTTCAACATCA
1 CACTCCCTACTCACACACTTCAACATCATCACGTGTGCACTCCCTACTCGCACACTTCAACATCA
14498235 TCA
66 TCA
14498238 CACAACATTA
Statistics
Matches: 62, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
79 60 0.97
80 2 0.03
ACGTcount: A:0.26, C:0.39, G:0.07, T:0.28
Consensus pattern (79 bp):
CACTCCCTACTCACACACTTCAACATCATCACGTGTGCACTCCCTACTCGCACACTTCAACATCA
TCATGTGTGCACTT
Found at i:14499319 original size:60 final size:61
Alignment explanation
Indices: 14499238--14499378 Score: 221
Period size: 60 Copynumber: 2.3 Consensus size: 61
14499228 GATGAATCGG
* *
14499238 GGCTTTAGGTCCCCCTCTTTACCTACTCGTGGAAACTACCAATGCCACTAAATATAAATCAA
1 GGCTTCAGGTCCCCCT-TTTACCTACTCGTGGAAACTACCAATGCCACCAAATATAAATCAA
*
14499300 GGCTTCAGGT-CCCCTTTTACCTACTCGTGGAAACTACCCATGCCACCAAATATAAATCAA
1 GGCTTCAGGTCCCCCTTTTACCTACTCGTGGAAACTACCAATGCCACCAAATATAAATCAA
* *
14499360 GACTTCAAGTCCCCCTTTT
1 GGCTTCAGGTCCCCCTTTT
14499379 TACCATCAAA
Statistics
Matches: 73, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
60 51 0.70
61 13 0.18
62 9 0.12
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (61 bp):
GGCTTCAGGTCCCCCTTTTACCTACTCGTGGAAACTACCAATGCCACCAAATATAAATCAA
Found at i:14500040 original size:16 final size:16
Alignment explanation
Indices: 14500019--14500062 Score: 70
Period size: 16 Copynumber: 2.7 Consensus size: 16
14500009 CCTTCTCTCA
*
14500019 TTTTTCTTCTTTTTTC
1 TTTTTCTTCTTTCTTC
14500035 TTTTTCTTCTTTCTTC
1 TTTTTCTTCTTTCTTC
14500051 TTTTTCCTTCTT
1 TTTTT-CTTCTT
14500063 CTCCTCGTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
16 20 0.77
17 6 0.23
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (16 bp):
TTTTTCTTCTTTCTTC
Found at i:14500047 original size:13 final size:14
Alignment explanation
Indices: 14500025--14500132 Score: 50
Period size: 13 Copynumber: 8.0 Consensus size: 14
14500015 CTCATTTTTC
*
14500025 TTCTTTTTTCTT-T
1 TTCTTCTTTCTTCT
14500038 TTCTTCTTTCTTCT
1 TTCTTCTTTCTTCT
*
14500052 TT-TTCCTTCTTCT
1 TTCTTCTTTCTTCT
* * * *
14500065 CCTCGTCACTGC-TCT
1 -TTCTTC-TTTCTTCT
*
14500080 TTCTCTCCTTCTTC-
1 TTCT-TCTTTCTTCT
14500094 TTCTT-TTTCTT-T
1 TTCTTCTTTCTTCT
* *
14500106 CTCTTCTTTCTTCC
1 TTCTTCTTTCTTCT
*
14500120 CTCTT-TTTCTTCT
1 TTCTTCTTTCTTCT
14500133 CCTCTGTCGC
Statistics
Matches: 74, Mismatches: 12, Indels: 18
0.71 0.12 0.17
Matches are distributed among these distances:
12 9 0.12
13 35 0.47
14 18 0.24
15 9 0.12
16 3 0.04
ACGTcount: A:0.01, C:0.32, G:0.02, T:0.65
Consensus pattern (14 bp):
TTCTTCTTTCTTCT
Found at i:14500047 original size:23 final size:23
Alignment explanation
Indices: 14500008--14500064 Score: 71
Period size: 23 Copynumber: 2.4 Consensus size: 23
14499998 ATGTCGTTGC
14500008 TCCTTCTCTCATT-TTTCTTCTTTT
1 TCCTTCT-TC-TTCTTTCTTCTTTT
* *
14500032 TTCTTTTTCTTCTTTCTTCTTTT
1 TCCTTCTTCTTCTTTCTTCTTTT
14500055 TCCTTCTTCT
1 TCCTTCTTCT
14500065 CCTCGTCACT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
22 2 0.07
23 21 0.75
24 5 0.18
ACGTcount: A:0.02, C:0.28, G:0.00, T:0.70
Consensus pattern (23 bp):
TCCTTCTTCTTCTTTCTTCTTTT
Found at i:14500064 original size:16 final size:16
Alignment explanation
Indices: 14500019--14500130 Score: 56
Period size: 16 Copynumber: 7.1 Consensus size: 16
14500009 CCTTCTCTCA
*
14500019 TTTTT-CTTCTTTTTTC
1 TTTTTCCTTC-TTCTTC
14500035 TTTTT-CTTCTTTCTTC
1 TTTTTCCTTC-TTCTTC
14500051 TTTTTCCTTCTTC-TC
1 TTTTTCCTTCTTCTTC
* ** *
14500066 CTCGTCACTGC-TCTT-
1 TTTTTC-CTTCTTCTTC
* *
14500081 TCTCTCCTTCTTCTTC
1 TTTTTCCTTCTTCTTC
*
14500097 TTTTTCTTTC-TCTTC
1 TTTTTCCTTCTTCTTC
* *
14500112 TTTCTTCCCTCTTTTTC
1 TTT-TTCCTTCTTCTTC
14500129 TT
1 TT
14500131 CTCCTCTGTC
Statistics
Matches: 73, Mismatches: 16, Indels: 13
0.72 0.16 0.13
Matches are distributed among these distances:
14 3 0.04
15 21 0.29
16 39 0.53
17 10 0.14
ACGTcount: A:0.01, C:0.31, G:0.02, T:0.66
Consensus pattern (16 bp):
TTTTTCCTTCTTCTTC
Found at i:14500136 original size:14 final size:14
Alignment explanation
Indices: 14500095--14500137 Score: 56
Period size: 13 Copynumber: 3.2 Consensus size: 14
14500085 TCCTTCTTCT
14500095 TCTTTTTCTT-T-C
1 TCTTTTTCTTCTCC
14500107 TCTTCTTTCTTC-CC
1 TCTT-TTTCTTCTCC
14500121 TCTTTTTCTTCTCC
1 TCTTTTTCTTCTCC
14500135 TCT
1 TCT
14500138 GTCGCTGCTC
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
12 4 0.15
13 13 0.48
14 10 0.37
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (14 bp):
TCTTTTTCTTCTCC
Found at i:14500248 original size:71 final size:70
Alignment explanation
Indices: 14500005--14500340 Score: 306
Period size: 68 Copynumber: 4.9 Consensus size: 70
14499995 TCTATGTCGT
* * * ** * *
14500005 TGCTCCTTCTCTCATTTTTCTTCTTTTTTCTTTTTCTTCTTTCTTCTTTTTC-CTTCTTCTCCTC
1 TGCTCCTTCTCTCCTTCTT-TT-TTTTTTCTTTCTCTTCTTTCTTCCCTCTCTTTTCTTCTCCTC
*
14500069 GT--CAC
64 GTCGCAG
* *
14500074 TGCTCTTTCTCTCCTTCTTCTTCTTTTTCTTTCTCTTCTTTCTTCCCTCT-TTTTCTTCTCCTCT
1 TGCTCCTTCTCTCCTTCTT-TTTTTTTTCTTTCTCTTCTTTCTTCCCTCTCTTTTCTTCTCCTC-
14500138 GTCGC--
64 GTCGCAG
* * *
14500143 TGCTCTTTCTCTCCTTCTTTTTTTTTTCTTTCTCTTCTTTCTTCCATCTCTTTT-TTCTCCCTTG
1 TGCTCCTTCTCTCCTTCTTTTTTTTTTCTTTCTCTTCTTTCTTCCCTCTCTTTTCTTCT-CCTCG
14500207 TCGCAG
65 TCGCAG
* *
14500213 TGCTCCCTCTCTCTTTCTCTTTTTTTTTCTTTCTCTTCTTT-TTCCCT-TCTTTTTCTTCTCCCT
1 TGCTCCTTCTCTCCTTCT-TTTTTTTTTCTTTCTCTTCTTTCTTCCCTCTC-TTTTCTTCT-CCT
*
14500276 CGTCGCCG
63 CGTCGCAG
* * *
14500284 TGCTCCCTCTCTCCTT-TTTTTCTATTTC--TCT-TTCTTT-TTCCTCTCTCCTTTC-TCTCC
1 TGCTCCTTCTCTCCTTCTTTTT-TTTTTCTTTCTCTTCTTTCTTCC-CTCTCTTTTCTTCTCC
14500341 CTCAAGCCCT
Statistics
Matches: 232, Mismatches: 21, Indels: 31
0.82 0.07 0.11
Matches are distributed among these distances:
66 2 0.01
67 13 0.06
68 80 0.34
69 55 0.24
70 30 0.13
71 52 0.22
ACGTcount: A:0.01, C:0.35, G:0.04, T:0.60
Consensus pattern (70 bp):
TGCTCCTTCTCTCCTTCTTTTTTTTTTCTTTCTCTTCTTTCTTCCCTCTCTTTTCTTCTCCTCGT
CGCAG
Found at i:14500264 original size:20 final size:17
Alignment explanation
Indices: 14500224--14500255 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
14500214 GCTCCCTCTC
14500224 TCTTTCTCTT-TTTTTT
1 TCTTTCTCTTCTTTTTT
14500240 TCTTTCTCTTCTTTTT
1 TCTTTCTCTTCTTTTT
14500256 CCCTTCTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (17 bp):
TCTTTCTCTTCTTTTTT
Found at i:14500379 original size:12 final size:12
Alignment explanation
Indices: 14500362--14500394 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
14500352 CACTCTTTTC
14500362 CTTCTCTTTCCT
1 CTTCTCTTTCCT
*
14500374 CTTCTCTTTCTT
1 CTTCTCTTTCCT
14500386 CTTCTCTTT
1 CTTCTCTTT
14500395 TTCTTTCTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (12 bp):
CTTCTCTTTCCT
Found at i:14500394 original size:24 final size:22
Alignment explanation
Indices: 14500354--14500411 Score: 73
Period size: 23 Copynumber: 2.6 Consensus size: 22
14500344 AAGCCCTCCA
*
14500354 CTCTTTTCCTTCTCTTTCCTCTT
1 CTCTTTTTCTTCTCTTT-CTCTT
*
14500377 CTCTTTCTTCTTCTCTTTTTCTT
1 CTCTTT-TTCTTCTCTTTCTCTT
14500400 -TCTTTTTCTTCT
1 CTCTTTTTCTTCT
14500412 TTTTTGGCAG
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
21 7 0.22
22 5 0.16
23 10 0.31
24 10 0.31
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (22 bp):
CTCTTTTTCTTCTCTTTCTCTT
Found at i:14500399 original size:18 final size:19
Alignment explanation
Indices: 14500378--14500415 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
14500368 TTTCCTCTTC
14500378 TCTTTCTTCTTC-TCTTTT
1 TCTTTCTTCTTCTTCTTTT
*
14500396 TCTTTCTTTTTCTTCTTTT
1 TCTTTCTTCTTCTTCTTTT
14500415 T
1 T
14500416 TGGCAGGTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (19 bp):
TCTTTCTTCTTCTTCTTTT
Found at i:14502288 original size:12 final size:12
Alignment explanation
Indices: 14502273--14502311 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
14502263 AATCATCTCC
*
14502273 ATATATATATAT
1 ATATATATGTAT
14502285 ATATATATGTAT
1 ATATATATGTAT
* *
14502297 GTATGTATGTAT
1 ATATATATGTAT
14502309 ATA
1 ATA
14502312 CACATTTAAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (12 bp):
ATATATATGTAT
Found at i:14521552 original size:37 final size:37
Alignment explanation
Indices: 14521452--14521578 Score: 112
Period size: 37 Copynumber: 3.4 Consensus size: 37
14521442 CGACAAGTAG
** *
14521452 AGAAACAAATCATGCTCGGTGTTGAAGCAACCAATAA
1 AGAAACAAATCACACTCAGTGTTGAAGCAACCAATAA
** * *
14521489 AGAATTAAATCACGCTCAGTGCTGAAGCAACCAGA-AA
1 AGAAACAAATCACACTCAGTGTTGAAGCAACCA-ATAA
* * * *** *
14521526 AGAAACAAATTACATTTAGTGTTGAAGCAATTGATGA
1 AGAAACAAATCACACTCAGTGTTGAAGCAACCAATAA
14521563 AGAAACAAATCACACT
1 AGAAACAAATCACACT
14521579 TGATGCTGAA
Statistics
Matches: 70, Mismatches: 18, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
36 1 0.01
37 68 0.97
38 1 0.01
ACGTcount: A:0.45, C:0.17, G:0.17, T:0.20
Consensus pattern (37 bp):
AGAAACAAATCACACTCAGTGTTGAAGCAACCAATAA
Found at i:14521589 original size:37 final size:37
Alignment explanation
Indices: 14521508--14521630 Score: 97
Period size: 37 Copynumber: 3.3 Consensus size: 37
14521498 TCACGCTCAG
* * * *
14521508 TGCTGAAGCAACCAGA-AAAGAAACAAATTACA-TTTA
1 TGCTGAAGCAATCA-ATGAAGAAACAAATCACACTTGA
* **
14521544 GTGTTGAAGCAATTGATGAAGAAACAAATCACACTTGA
1 -TGCTGAAGCAATCAATGAAGAAACAAATCACACTTGA
* * * * *
14521582 TGCTGAAGTAATCAATGGAGAAACAAATCACGCTCGG
1 TGCTGAAGCAATCAATGAAGAAACAAATCACACTTGA
*
14521619 TGCCGAAGCAAT
1 TGCTGAAGCAAT
14521631 GGTAAACAAA
Statistics
Matches: 67, Mismatches: 17, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
36 1 0.01
37 63 0.94
38 3 0.04
ACGTcount: A:0.42, C:0.17, G:0.20, T:0.20
Consensus pattern (37 bp):
TGCTGAAGCAATCAATGAAGAAACAAATCACACTTGA
Found at i:14529094 original size:81 final size:81
Alignment explanation
Indices: 14528959--14529110 Score: 252
Period size: 81 Copynumber: 1.9 Consensus size: 81
14528949 ATCTGTAGAA
* * *
14528959 TGCAATGTTTAACAACCAAAATTTATTTCTGTAGAAGTAAAAGGTGGCCTATGTAATGTGTTTAG
1 TGCAATGTATAACAACCAAAATTTATTTCTGTAGAAGTAAAAGGTGGCATATGTAATGTGTCTAG
14529024 TTGGTGATCTTGTATG
66 TTGGTGATCTTGTATG
*
14529040 TGCAATGTATAACAACCTAAAA-TTATTTCTGTAGAAGTAAGAGGTGGCATATGTAATGTGTCTA
1 TGCAATGTATAACAACC-AAAATTTATTTCTGTAGAAGTAAAAGGTGGCATATGTAATGTGTCTA
14529104 GTTGGTG
65 GTTGGTG
14529111 GTGTATGTTA
Statistics
Matches: 66, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
81 62 0.94
82 4 0.06
ACGTcount: A:0.31, C:0.10, G:0.23, T:0.36
Consensus pattern (81 bp):
TGCAATGTATAACAACCAAAATTTATTTCTGTAGAAGTAAAAGGTGGCATATGTAATGTGTCTAG
TTGGTGATCTTGTATG
Found at i:14532630 original size:34 final size:33
Alignment explanation
Indices: 14532576--14532639 Score: 92
Period size: 34 Copynumber: 1.9 Consensus size: 33
14532566 GTATTATATA
14532576 TTGATTTTCTATTAAAATGTTGCATTTTTTTAT
1 TTGATTTTCTATTAAAATGTTGCATTTTTTTAT
* * *
14532609 TTGATTTTTGTATTAATATGTTGTATTTTTT
1 TTGA-TTTTCTATTAAAATGTTGCATTTTTT
14532640 CTTCAAAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
33 4 0.15
34 23 0.85
ACGTcount: A:0.22, C:0.03, G:0.11, T:0.64
Consensus pattern (33 bp):
TTGATTTTCTATTAAAATGTTGCATTTTTTTAT
Found at i:14543821 original size:17 final size:17
Alignment explanation
Indices: 14543799--14543842 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
14543789 AATTAATTAT
*
14543799 ATTAAAAATATATAAAA
1 ATTAAAAATATAGAAAA
*
14543816 ATTAAAAAAATAGAAAA
1 ATTAAAAATATAGAAAA
* *
14543833 GTAAAAAATA
1 ATTAAAAATA
14543843 ATTAATAAAA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.73, C:0.00, G:0.05, T:0.23
Consensus pattern (17 bp):
ATTAAAAATATAGAAAA
Found at i:14545305 original size:18 final size:18
Alignment explanation
Indices: 14545282--14545330 Score: 71
Period size: 18 Copynumber: 2.7 Consensus size: 18
14545272 TATAAACAAG
14545282 AAAAATTAAAAATATATA
1 AAAAATTAAAAATATATA
* *
14545300 AAAAATTATATATATATA
1 AAAAATTAAAAATATATA
*
14545318 AAAAATGAAAAAT
1 AAAAATTAAAAAT
14545331 GAAAAAAGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (18 bp):
AAAAATTAAAAATATATA
Found at i:14545821 original size:68 final size:68
Alignment explanation
Indices: 14545712--14545929 Score: 364
Period size: 68 Copynumber: 3.2 Consensus size: 68
14545702 AGAAGATCTA
*
14545712 GAGAGAGGCGGAGCCGTGATCTGCTGCCGGCGCAAGAGGAAGAAGAGCTGAGCAGAGGAATAGAG
1 GAGAGAGGCGGAGCCGCGATCTGCTGCCGGCGCAAGAGGAAGAAGAGCTGAGCAGAGGAATAGAG
14545777 AAG
66 AAG
* * *
14545780 GAGAGAGGCGGAGTCGCGATCTGCTGCCGACGCAAGAGGAAGAAGAGCTGAGTAGAGGAATAGAG
1 GAGAGAGGCGGAGCCGCGATCTGCTGCCGGCGCAAGAGGAAGAAGAGCTGAGCAGAGGAATAGAG
14545845 AAG
66 AAG
* *
14545848 GAGAGAGGCGGAGCCGCAATCTGCTGCCGGCGCAAGAGGAAAAAGAGCTGAGCAGAGGAATAGAG
1 GAGAGAGGCGGAGCCGCGATCTGCTGCCGGCGCAAGAGGAAGAAGAGCTGAGCAGAGGAATAGAG
14545913 AAG
66 AAG
* *
14545916 GAGAGGGGTGGAGC
1 GAGAGAGGCGGAGC
14545930 TGCAGCACCA
Statistics
Matches: 139, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
68 139 1.00
ACGTcount: A:0.33, C:0.16, G:0.43, T:0.09
Consensus pattern (68 bp):
GAGAGAGGCGGAGCCGCGATCTGCTGCCGGCGCAAGAGGAAGAAGAGCTGAGCAGAGGAATAGAG
AAG
Found at i:14546485 original size:2 final size:2
Alignment explanation
Indices: 14546478--14546521 Score: 61
Period size: 2 Copynumber: 22.0 Consensus size: 2
14546468 GTATACTAAA
* * *
14546478 AT AT AT AT AT AT AT AC AT AC AT AT AT AT AT AT AT AC AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14546520 AT
1 AT
14546522 GTAGTGAATA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (2 bp):
AT
Found at i:14546490 original size:18 final size:18
Alignment explanation
Indices: 14546458--14546521 Score: 67
Period size: 18 Copynumber: 3.4 Consensus size: 18
14546448 GGGGCGTGAG
* *
14546458 AAATATTTATGTATACTA-
1 AAATATATATATATA-TAC
14546476 AAATATATATATATATAC
1 AAATATATATATATATAC
14546494 ATACATATATATATATATAC
1 A-A-ATATATATATATATAC
*
14546514 ATATATAT
1 AAATATAT
14546522 GTAGTGAATA
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
17 2 0.05
18 20 0.50
19 1 0.03
20 17 0.43
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.42
Consensus pattern (18 bp):
AAATATATATATATATAC
Found at i:14546492 original size:20 final size:20
Alignment explanation
Indices: 14546476--14546521 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
14546466 ATGTATACTA
14546476 AAATATATATATATATACAT
1 AAATATATATATATATACAT
*
14546496 ACATATATATATATATACAT
1 AAATATATATATATATACAT
*
14546516 ATATAT
1 AAATAT
14546522 GTAGTGAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (20 bp):
AAATATATATATATATACAT
Found at i:14546501 original size:16 final size:16
Alignment explanation
Indices: 14546482--14546521 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
14546472 ACTAAAATAT
14546482 ATATATATATACATAC
1 ATATATATATACATAC
*
14546498 ATATATATATATATAC
1 ATATATATATACATAC
14546514 ATATATAT
1 ATATATAT
14546522 GTAGTGAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.42
Consensus pattern (16 bp):
ATATATATATACATAC
Found at i:14546941 original size:18 final size:18
Alignment explanation
Indices: 14546918--14546959 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
14546908 TACATAATAC
14546918 TAAATAAATAAAAATAAA
1 TAAATAAATAAAAATAAA
* * *
14546936 TAAATATATAATAGTAAA
1 TAAATAAATAAAAATAAA
14546954 -AAATAA
1 TAAATAA
14546960 CTAATTCAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
17 5 0.25
18 15 0.75
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.26
Consensus pattern (18 bp):
TAAATAAATAAAAATAAA
Found at i:14547035 original size:16 final size:16
Alignment explanation
Indices: 14547022--14547111 Score: 55
Period size: 15 Copynumber: 5.8 Consensus size: 16
14547012 GAAGATAAAG
14547022 ATAAAAAATAATAATA
1 ATAAAAAATAATAATA
* *
14547038 ATAAGAAATAAGAAT-
1 ATAAAAAATAATAATA
** * *
14547053 AGGAAATATGATAATA
1 ATAAAAAATAATAATA
* *
14547069 A-AATATATAATAA-A
1 ATAAAAAATAATAATA
14547083 AT-AAAAATAATTAATA
1 ATAAAAAATAA-TAATA
14547099 ATAACAAAA-AATA
1 ATAA-AAAATAATA
14547112 TAGATTATTG
Statistics
Matches: 55, Mismatches: 13, Indels: 12
0.69 0.16 0.15
Matches are distributed among these distances:
14 8 0.15
15 21 0.38
16 19 0.35
17 3 0.05
18 4 0.07
ACGTcount: A:0.69, C:0.01, G:0.06, T:0.24
Consensus pattern (16 bp):
ATAAAAAATAATAATA
Found at i:14547080 original size:12 final size:13
Alignment explanation
Indices: 14547056--14547085 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
14547046 TAAGAATAGG
14547056 AAATATGATAATA
1 AAATATGATAATA
14547069 AAATAT-ATAATA
1 AAATATGATAATA
14547081 AAATA
1 AAATA
14547086 AAAATAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.65
13 6 0.35
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (13 bp):
AAATATGATAATA
Found at i:14547091 original size:18 final size:19
Alignment explanation
Indices: 14547068--14547113 Score: 53
Period size: 18 Copynumber: 2.5 Consensus size: 19
14547058 ATATGATAAT
*
14547068 AAAATATATAATAA-AATA
1 AAAATATATAATAATAACA
14547086 AAAATA-ATTAATAATAACA
1 AAAATATA-TAATAATAACA
14547105 AAAA-ATATA
1 AAAATATATA
14547114 GATTATTGCA
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
17 1 0.04
18 15 0.62
19 8 0.33
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (19 bp):
AAAATATATAATAATAACA
Found at i:14547109 original size:21 final size:23
Alignment explanation
Indices: 14547075--14547118 Score: 58
Period size: 21 Copynumber: 2.0 Consensus size: 23
14547065 AATAAAATAT
14547075 ATAATAAAATAAAA-ATA-ATTA
1 ATAATAAAATAAAATATAGATTA
14547096 ATAATAACAA-AAAATATAGATTA
1 ATAATAA-AATAAAATATAGATTA
14547119 TTGCATAGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 11 0.55
22 5 0.25
23 4 0.20
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.27
Consensus pattern (23 bp):
ATAATAAAATAAAATATAGATTA
Found at i:14549040 original size:14 final size:14
Alignment explanation
Indices: 14549021--14549050 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
14549011 GCTCTCAATC
14549021 ATACTTCTACGATA
1 ATACTTCTACGATA
*
14549035 ATACTTCTATGATA
1 ATACTTCTACGATA
14549049 AT
1 AT
14549051 GTAAAAGCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.37, C:0.17, G:0.07, T:0.40
Consensus pattern (14 bp):
ATACTTCTACGATA
Found at i:14552484 original size:51 final size:51
Alignment explanation
Indices: 14552418--14552540 Score: 219
Period size: 51 Copynumber: 2.4 Consensus size: 51
14552408 CAAAAGTGTA
*
14552418 TGGGTTTCAAAAGGAACCAAACCTCCACATGGTAAAGTAGTAAAATAGGAG
1 TGGGTTCCAAAAGGAACCAAACCTCCACATGGTAAAGTAGTAAAATAGGAG
*
14552469 TGGGTTCCAAAAGGAACTAAACCTCCACATGGTAAAGTAGTAAAATAGGAG
1 TGGGTTCCAAAAGGAACCAAACCTCCACATGGTAAAGTAGTAAAATAGGAG
*
14552520 TGGCTTCCAAAAGGAACCAAA
1 TGGGTTCCAAAAGGAACCAAA
14552541 GACACTAACT
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 68 1.00
ACGTcount: A:0.41, C:0.17, G:0.23, T:0.19
Consensus pattern (51 bp):
TGGGTTCCAAAAGGAACCAAACCTCCACATGGTAAAGTAGTAAAATAGGAG
Found at i:14555455 original size:2 final size:2
Alignment explanation
Indices: 14555450--14555480 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
14555440 AATGTTATTC
*
14555450 AT AT AT AT AT AT AT AT AT AG AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
14555481 GGTTTGCTAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (2 bp):
AT
Found at i:14562988 original size:2 final size:2
Alignment explanation
Indices: 14562976--14563054 Score: 131
Period size: 2 Copynumber: 39.5 Consensus size: 2
14562966 TCCATGACAC
* * *
14562976 AT AT AT CT AT AT AT AT GT GT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14563018 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
14563055 NNNNNNNNNN
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 73 1.00
ACGTcount: A:0.47, C:0.01, G:0.03, T:0.49
Consensus pattern (2 bp):
AT
Found at i:14565797 original size:60 final size:60
Alignment explanation
Indices: 14565716--14565949 Score: 254
Period size: 60 Copynumber: 3.9 Consensus size: 60
14565706 GATATCATCA
* * * * *
14565716 CCTACTCATGGGAATTACCCACGCCACCGTATATAAATCGGGGCTTTAGGTCCCATTTTG
1 CCTACTCATGGGATTTGCCCACGCCACCATATATAAATCGGGGCTTCAGGTCCCACTTTG
* * ** ** *
14565776 TCTACTTATGGGATTTGCCCACATCACCATATATAAATTAGGGCTTCAGGTCCCCCTTTG
1 CCTACTCATGGGATTTGCCCACGCCACCATATATAAATCGGGGCTTCAGGTCCCACTTTG
* * *
14565836 CCTACTCGTGGGATTTGCCCACGCCACCATATATAAATCGAGGCTTCAGGTCCCCCTTTG
1 CCTACTCATGGGATTTGCCCACGCCACCATATATAAATCGGGGCTTCAGGTCCCACTTTG
* * ** * * *
14565896 CCTACTCGTGAGAACTGCCCACCCCACCCA-ATATGAATCAGGGCTTCAGGTCCC
1 CCTACTCATGGGATTTGCCCACGCCA-CCATATATAAATCGGGGCTTCAGGTCCC
14565950 CATTTTACAA
Statistics
Matches: 146, Mismatches: 27, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
60 143 0.98
61 3 0.02
ACGTcount: A:0.23, C:0.32, G:0.19, T:0.27
Consensus pattern (60 bp):
CCTACTCATGGGATTTGCCCACGCCACCATATATAAATCGGGGCTTCAGGTCCCACTTTG
Found at i:14565939 original size:120 final size:120
Alignment explanation
Indices: 14565716--14565950 Score: 292
Period size: 120 Copynumber: 2.0 Consensus size: 120
14565706 GATATCATCA
* * * * *
14565716 CCTACTCATGGGAATTACCCACGCCACCGTATATAAATCGGGGCTTTAGGTCCCATTTTGTCTAC
1 CCTACTCATGGGAATTACCCACGCCACCATATATAAATCGAGGCTTCAGGTCCCACTTTGCCTAC
* * ** * *
14565781 TTATGGGATTTGCCCACATCACCATATATAAATTAGGGCTTCAGGTCCCCCTTTG
66 TCATGAGAACTGCCCACACCACCATATATAAATCAGGGCTTCAGGTCCCCCTTTG
* * * *
14565836 CCTACTCGTGGGATTTGCCCACGCCACCATATATAAATCGAGGCTTCAGGTCCCCCTTTGCCTAC
1 CCTACTCATGGGAATTACCCACGCCACCATATATAAATCGAGGCTTCAGGTCCCACTTTGCCTAC
* * *
14565901 TCGTGAGAACTGCCCACCCCACCCA-ATATGAATCAGGGCTTCAGGTCCCC
66 TCATGAGAACTGCCCACACCA-CCATATATAAATCAGGGCTTCAGGTCCCC
14565951 ATTTTACAAT
Statistics
Matches: 96, Mismatches: 18, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
120 93 0.97
121 3 0.03
ACGTcount: A:0.23, C:0.32, G:0.19, T:0.27
Consensus pattern (120 bp):
CCTACTCATGGGAATTACCCACGCCACCATATATAAATCGAGGCTTCAGGTCCCACTTTGCCTAC
TCATGAGAACTGCCCACACCACCATATATAAATCAGGGCTTCAGGTCCCCCTTTG
Found at i:14566554 original size:69 final size:68
Alignment explanation
Indices: 14566467--14566802 Score: 309
Period size: 69 Copynumber: 5.0 Consensus size: 68
14566457 TCTTTTTTTT
* * *
14566467 TTCTCCTCTGTCGCTGCTCCTTCTCTCCTTCTTCTTT-TTTTTCTTTCTCTTATTTCTTCCCTCT
1 TTCTCCTTTGCCGCTGCTCCTTCTCTCATTCTT-TTTCTTTTTCTTTCTCTT-TTTCTTCCCTCT
14566531 CTTTC
64 CTTTC
* *
14566536 TTCTCCTTTGCCGCTGCTCCTTCTCTCATTCTTTTTCTTTTTCTTTCTCTTATTTCTTCTCTTTC
1 TTCTCCTTTGCCGCTGCTCCTTCTCTCATTCTTTTTCTTTTTCTTTCTCTT-TTTCTTCCCTCTC
*
14566601 TTTT
65 TTTC
* * * * * *
14566605 TTCTCCTCTGCCACTACTCTTTCTCTCATTCTTTTTCTTTTTCTTTCTCTTTTTTTTCCCTCTCA
1 TTCTCCTTTGCCGCTGCTCCTTCTCTCATTCTTTTTCTTTTTCTTTCTCTTTTTCTTCCCTCTCT
14566670 TTC
66 TTC
* * * * *
14566673 TTCTCCTCTGTGTCG-TGCTCCCTCT-TCCTTTCTTCTTCTTTTTCTCTT-TCTTTTTCTTCTCT
1 TTCTCCT-T-TGCCGCTGCTCCTTCTCT-CATTCTTTTTCTTTTTCT-TTCTCTTTTTCTTCCCT
14566735 C-CTTTC
62 CTCTTTC
* * * *
14566741 -TCTCC-TTGTCG-T-CATACTTC-CTC-TCTCTTTCTT-TTTCTCTTTCTCTTTTTTTTCCCTC
1 TTCTCCTTTGCCGCTGC-TCCTTCTCTCAT-TCTTT-TTCTTTTTCTTTCTCTTTTTCTTCCCTC
14566799 TCTT
63 TCTT
14566803 ATTTCTCTCT
Statistics
Matches: 224, Mismatches: 32, Indels: 27
0.79 0.11 0.10
Matches are distributed among these distances:
62 3 0.01
63 25 0.11
64 16 0.07
65 1 0.00
67 5 0.02
68 27 0.12
69 142 0.63
70 5 0.02
ACGTcount: A:0.03, C:0.34, G:0.04, T:0.60
Consensus pattern (68 bp):
TTCTCCTTTGCCGCTGCTCCTTCTCTCATTCTTTTTCTTTTTCTTTCTCTTTTTCTTCCCTCTCT
TTC
Found at i:14566692 original size:138 final size:137
Alignment explanation
Indices: 14566455--14566734 Score: 363
Period size: 138 Copynumber: 2.0 Consensus size: 137
14566445 TTGGCTATTC
* * * * *
14566455 TCTCTTTTTTTTTTCTCCTCTGTCGCTGCTCCTTCTCTCCTTCTTCTTTTTTTTCTTTCTCTTAT
1 TCTCTTTCTTTTTTCTCCTCTGCCACTACTCCTTCTCTCATTCTTCTTTTTTTTCTTTCTCTTAT
* * *
14566520 TTCTTCCCTCTCTTTCTTCTCCTTTGCCGCTGCTCCTTC-TCTCATTCTTTTTCTTTTTCT-TTC
66 TTCTTCCCTCTCATTCTTCTCCTTTGCCGCTGCTCCCTCTTC-CATTCTTCTTCTTTTTCTCTT-
14566583 TCTTATTTCT
129 TCTT-TTTCT
*
14566593 TCTCTTTCTTTTTTCTCCTCTGCCACTACTCTTTCTCTCATTCTT-TTTCTTTTTCTTTCTCTT-
1 TCTCTTTCTTTTTTCTCCTCTGCCACTACTCCTTCTCTCATTCTTCTTT-TTTTTCTTTCTCTTA
* * *
14566656 TTTTTTCCCTCTCATTCTTCTCCTCTGTGTCG-TGCTCCCTCTTCCTTTCTTCTTCTTTTTCTCT
65 TTTCTTCCCTCTCATTCTTCTCCT-T-TGCCGCTGCTCCCTCTTCCATTCTTCTTCTTTTTCTCT
14566720 TTCTTTTTCT
128 TTCTTTTTCT
14566730 TCTCT
1 TCTCT
14566735 CCTTTCTCTC
Statistics
Matches: 125, Mismatches: 12, Indels: 11
0.84 0.08 0.07
Matches are distributed among these distances:
137 35 0.28
138 82 0.66
139 8 0.06
ACGTcount: A:0.03, C:0.33, G:0.04, T:0.61
Consensus pattern (137 bp):
TCTCTTTCTTTTTTCTCCTCTGCCACTACTCCTTCTCTCATTCTTCTTTTTTTTCTTTCTCTTAT
TTCTTCCCTCTCATTCTTCTCCTTTGCCGCTGCTCCCTCTTCCATTCTTCTTCTTTTTCTCTTTC
TTTTTCT
Found at i:14566739 original size:18 final size:17
Alignment explanation
Indices: 14566698--14566741 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
14566688 TGCTCCCTCT
*
14566698 TCCTTTCTTCTTCTTTT
1 TCCTTTCTTCTTCTTTC
*
14566715 TCTCTTTCTTTTTCTTCTC
1 TC-CTTTCTTCTTCTT-TC
14566734 TCCTTTCT
1 TCCTTTCT
14566742 CTCCTTGTCG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
17 2 0.09
18 18 0.78
19 3 0.13
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (17 bp):
TCCTTTCTTCTTCTTTC
Found at i:14566771 original size:67 final size:66
Alignment explanation
Indices: 14566468--14566904 Score: 256
Period size: 69 Copynumber: 6.4 Consensus size: 66
14566458 CTTTTTTTTT
* * *
14566468 TCTCCTCTGTCGC-TGC-TCCTTCTCTCCTTCTTCTTTTTTTTCTTTCTCTTATTTCTTCCCTCT
1 TCTCCT-TGTCGCATGCTTCC-TCTCTCTTTCTTCTTCTTTTTCTTTCTCTT-TTTCTTCTCTC-
14566531 CTTTC
62 CTTTC
* * *
14566536 TTCTCCTTTGCCGC-TGC-TCCTTCTCTCATTCTTTTTCTTTTTCTTTCTCTTATTTCTTCTCTT
1 -TCTCC-TTGTCGCATGCTTCC-TCTCTCTTTCTTCTTCTTTTTCTTTCTCTT-TTTCTTCTC--
* *
14566599 TCTTTTT
60 TCCTTTC
* * * * * *
14566606 TCTCCTCTG-C-CACTAC-TCTTTCTCTCATTCTTTTTCTTTTTCTTTCTCTTTTTTTTCCCTCT
1 TCTCCT-TGTCGCA-TGCTTC-CTCTCTCTTTCTTCTTCTTTTTCTTTCTCTTTTTCTTCTCTC-
*
14566668 CATTC
62 CTTTC
* *
14566673 TTCTCCTCTGT-GTCGTGCTCCCTCT-TCCTTTCTTCTTCTTTTTCTCTT-TCTTTTTCTTCTCT
1 -TCTCCT-TGTCG-CATGCTTCCTCTCT-CTTTCTTCTTCTTTTTCT-TTCTCTTTTTCTTCTCT
14566735 CCTTTC
61 CCTTTC
* * * * **
14566741 TCTCCTTGTCGTCATACTTCCTCTCTCTTTCTTTTTCTCTTTCTCTTT-T-TTTTCCCTCTCTTA
1 TCTCCTTGTCG-CATGCTTCCTCTCTCTTTCTTCTTCT-TTT-TCTTTCTCTTTTTCTTCTCTCC
14566804 TTTC
63 TTTC
* * *
14566808 TCT-CTTCGTCGCAGTGCTCCCTCCCTCTTTCTTCTTCTCTTTCTCTTT-T-TTTTTCCTCTCTC
1 TCTCCTT-GTCGCA-TGCTTCCTCTCTCTTTCTTCTTCT-TTT-TCTTTCTCTTTTTCTTCTCTC
14566870 CTTTC
62 CTTTC
* * * *
14566875 TCTCATCGTCACTATGCTCCCTCTCTCTTT
1 TCTCCTTGTCGC-ATGCTTCCTCTCTCTTT
14566905 TCTCCCCCTC
Statistics
Matches: 303, Mismatches: 42, Indels: 48
0.77 0.11 0.12
Matches are distributed among these distances:
66 10 0.03
67 120 0.40
68 32 0.11
69 131 0.43
70 8 0.03
71 2 0.01
ACGTcount: A:0.03, C:0.35, G:0.04, T:0.57
Consensus pattern (66 bp):
TCTCCTTGTCGCATGCTTCCTCTCTCTTTCTTCTTCTTTTTCTTTCTCTTTTTCTTCTCTCCTTT
C
Found at i:14566776 original size:61 final size:65
Alignment explanation
Indices: 14566708--14566856 Score: 164
Period size: 67 Copynumber: 2.3 Consensus size: 65
14566698 TCCTTTCTTC
* * *
14566708 TTCTTTTTCTCTTTCTTTTTCTTCTCTC-CTT-TCTCTC-CTT-GTCGTCA-TACTTCCTCTCTC
1 TTCTTTTTCTCTTTCTTTTTCTTCCCTCTCTTATCTCTCTCTTCGTCG-CAGTACTCCCTCCCTC
14566768 T
65 T
* * *
14566769 TTCTTTTTCTCTTTCTCTTTTTTTTCCCTCTCTTATTTCTCTCTTCGTCGCAGTGCTCCCTCCCT
1 TTCTTTTTCTC-TT-TCTTTTTCTTCCCTCTCTTATCTCTCTCTTCGTCGCAGTACTCCCTCCCT
14566834 CT
64 CT
*
14566836 TTCTTCTTCTCTTTCTCTTTT
1 TTCTTTTTCTCTTTCT-TTTT
14566857 TTTTTCCTCT
Statistics
Matches: 73, Mismatches: 7, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
61 11 0.15
62 2 0.03
63 13 0.18
64 3 0.04
65 8 0.11
66 11 0.15
67 25 0.34
ACGTcount: A:0.03, C:0.34, G:0.04, T:0.59
Consensus pattern (65 bp):
TTCTTTTTCTCTTTCTTTTTCTTCCCTCTCTTATCTCTCTCTTCGTCGCAGTACTCCCTCCCTCT
Found at i:14566843 original size:134 final size:130
Alignment explanation
Indices: 14566638--14566878 Score: 337
Period size: 134 Copynumber: 1.8 Consensus size: 130
14566628 TCTCATTCTT
*
14566638 TTTCTTTTTCTTTCTCTTTTTTTTCCCTCTCATTCTTCTCCTCTGTGTCGTGCTCCCTCTTCCTT
1 TTTCTTTTTCTTTCTCTTTTTTTTCCCTCTCATTCTTCTCCTCTGTGTCGTGCTCCCTCCTCCTT
* *
14566703 TCTTCTTCTTTTTCTCTTTCTTTTTCTTCTCTCCTTTCTCTCCTTGTCGTCATACTTCCTCTCTC
66 TCTTCTTCTCTTTCTCTTTCTTTTTCCTCTCTCCTTTCTCTCCTTGTCGTCATACTTCCTCTCTC
*
14566768 TTTCTTTTTCTCTTTCTCTTTTTTTTCCCTCTC-TTATT-TCTCTCT-TCGTCGCAGTGCTCCCT
1 TTTC-TTTT-TCTTTCTCTTTTTTTTCCCTCTCATTCTTCTC-CTCTGT-GT--C-GTGCTCCCT
*
14566830 CC-CTCTTTCTTCTTCTCTTTCTCTTTTTTTTTCCTCTCTCCTTTCTCTC
59 CCTC-CTTTCTTCTTCTCTTTCTCTTTCTTTTTCCTCTCTCCTTTCTCTC
14566879 ATCGTCACTA
Statistics
Matches: 98, Mismatches: 5, Indels: 12
0.85 0.04 0.10
Matches are distributed among these distances:
130 7 0.07
131 14 0.14
132 23 0.23
133 2 0.02
134 52 0.53
ACGTcount: A:0.02, C:0.35, G:0.04, T:0.59
Consensus pattern (130 bp):
TTTCTTTTTCTTTCTCTTTTTTTTCCCTCTCATTCTTCTCCTCTGTGTCGTGCTCCCTCCTCCTT
TCTTCTTCTCTTTCTCTTTCTTTTTCCTCTCTCCTTTCTCTCCTTGTCGTCATACTTCCTCTCTC
Found at i:14573015 original size:60 final size:60
Alignment explanation
Indices: 14572882--14573119 Score: 275
Period size: 60 Copynumber: 4.0 Consensus size: 60
14572872 TATCACCACA
* * *
14572882 TACTCGTGGGAACTACCCACGCCACCATATATAAAT-TAGGCTTCCGGTCTCCCTTTTTGCC
1 TACTCGTGGGAACTACCCACGCCACCATATATAAATCGAGGCTTCAGGTC-CCC-CTTTGCC
* * *
14572943 TACTCGTGGGATCTACCCATGCCACCATATATCAATCGAGGCTTCAGGTCCCCCTTTGCC
1 TACTCGTGGGAACTACCCACGCCACCATATATAAATCGAGGCTTCAGGTCCCCCTTTGCC
* * * * * * *
14573003 TACTCGTGGGATCTGCCCATGCCACCATATATAAATTGGGGATTCAGGTCCCCTTTTGCC
1 TACTCGTGGGAACTACCCACGCCACCATATATAAATCGAGGCTTCAGGTCCCCCTTTGCC
* * *
14573063 TACTCGTAGGAACTGCCCACGCCACCCA-ATATGAATC-AGGGCTTCAGGTCCCCCTTT
1 TACTCGTGGGAACTACCCACGCCA-CCATATATAAATCGA-GGCTTCAGGTCCCCCTTT
14573120 TACAATCAAA
Statistics
Matches: 154, Mismatches: 20, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
60 104 0.68
61 39 0.25
62 11 0.07
ACGTcount: A:0.21, C:0.33, G:0.19, T:0.27
Consensus pattern (60 bp):
TACTCGTGGGAACTACCCACGCCACCATATATAAATCGAGGCTTCAGGTCCCCCTTTGCC
Found at i:14573116 original size:120 final size:121
Alignment explanation
Indices: 14572882--14573119 Score: 322
Period size: 120 Copynumber: 2.0 Consensus size: 121
14572872 TATCACCACA
* *
14572882 TACTCGTGGGAACTACCCACGCCACCATATATAAATTAGGCTTCCGGTCTCCCTTTTTGCCTACT
1 TACTCGTGGGAACTACCCACGCCACCATATATAAATTAGGATTCAGGTCTCCCTTTTTGCCTACT
* * *
14572947 CGTGGGATCTACCCATGCCACCATATATCAATCGAGGCTTCAGGTCCCCCTTTGCC
66 CGTAGGAACTACCCACGCCACCATATATCAATCGAGGCTTCAGGTCCCCCTTTGCC
* * * *
14573003 TACTCGTGGGATCTGCCCATGCCACCATATATAAATTGGGGATTCAGGTC-CCC-TTTTGCCTAC
1 TACTCGTGGGAACTACCCACGCCACCATATATAAATT-AGGATTCAGGTCTCCCTTTTTGCCTAC
* *
14573066 TCGTAGGAACTGCCCACGCCACCCA-ATATGAATC-AGGGCTTCAGGTCCCCCTTT
65 TCGTAGGAACTACCCACGCCA-CCATATATCAATCGA-GGCTTCAGGTCCCCCTTT
14573120 TACAATCAAA
Statistics
Matches: 103, Mismatches: 11, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
119 1 0.01
120 53 0.51
121 40 0.39
122 9 0.09
ACGTcount: A:0.21, C:0.33, G:0.19, T:0.27
Consensus pattern (121 bp):
TACTCGTGGGAACTACCCACGCCACCATATATAAATTAGGATTCAGGTCTCCCTTTTTGCCTACT
CGTAGGAACTACCCACGCCACCATATATCAATCGAGGCTTCAGGTCCCCCTTTGCC
Found at i:14573745 original size:13 final size:12
Alignment explanation
Indices: 14573709--14573767 Score: 57
Period size: 13 Copynumber: 4.8 Consensus size: 12
14573699 GTCGTTGCTC
*
14573709 CTTCTC-TCCTT
1 CTTCTCTTCTTT
* *
14573720 CTTCTTTTTTTT
1 CTTCTCTTCTTT
14573732 CTTTCTCTTCTTT
1 C-TTCTCTTCTTT
*
14573745 CTTCCCTCTCTTT
1 CTTCTCT-TCTTT
14573758 CTTCTCTTCT
1 CTTCTCTTCT
14573768 ACCGCTGTGC
Statistics
Matches: 38, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
11 5 0.13
12 12 0.32
13 21 0.55
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (12 bp):
CTTCTCTTCTTT
Found at i:14573808 original size:17 final size:17
Alignment explanation
Indices: 14573788--14573958 Score: 54
Period size: 17 Copynumber: 10.2 Consensus size: 17
14573778 TCCCTTTCCA
* *
14573788 TTTCTTCTTCTTTTCTC
1 TTTCTTCTTCCTCTCTC
*
14573805 TTTCTTTTTCCTCTCTC
1 TTTCTTCTTCCTCTCTC
*
14573822 -TT-TTCTCTCCTCGTC-G
1 TTTCTTCT-TCCTC-TCTC
* *
14573838 TTT-TGCTCCCTCTCTC
1 TTTCTTCTTCCTCTCTC
* *
14573854 TTTCTTTTTCTCTTTCTC
1 TTTCTTCTTC-CTCTCTC
* * *
14573872 TTTCTTTTTTCTCTATCC
1 TTTCTTCTTCCTCTCT-C
*
14573890 TTTC-TC-TCCTCGTCAC
1 TTTCTTCTTCCTC-TCTC
* * *
14573906 TGTGC-TC--ACTCTCTA
1 T-TTCTTCTTCCTCTCTC
* *
14573921 TTTCTTCTTCTCTTTCTT
1 TTTCTTCTTC-CTCTCTC
*
14573939 TTTCTTTTTCCTCTCTC
1 TTTCTTCTTCCTCTCTC
14573956 TTT
1 TTT
14573959 TCTCTCCACA
Statistics
Matches: 111, Mismatches: 30, Indels: 26
0.66 0.18 0.16
Matches are distributed among these distances:
14 2 0.02
15 10 0.09
16 23 0.21
17 42 0.38
18 34 0.31
ACGTcount: A:0.02, C:0.33, G:0.04, T:0.61
Consensus pattern (17 bp):
TTTCTTCTTCCTCTCTC
Found at i:14573824 original size:67 final size:67
Alignment explanation
Indices: 14573731--14574052 Score: 242
Period size: 67 Copynumber: 4.8 Consensus size: 67
14573721 TTCTTTTTTT
*
14573731 TCTTTCTC-TTCTTTCTTCC-CTCTCTTTCTTCTCTTCTACCGCTGTGCTCCCTTTCCATTTCTT
1 TCTTTCTCTTTCTTT-TTCCTCTCTCTTTCTTCTCTTCT-CCGCTGTGCTCCCTCTCCATTTCTT
14573794 CTTC
64 CTTC
* * *
14573798 T-TTTCTCTTTCTTTTTCCTCTCTC-TT-TTCTCTCCTCGTCGTTTTGCTCCCTCTCTC-TTTCT
1 TCTTTCTCTTTCTTTTTCCTCTCTCTTTCTTCTCTTCTC--CGCTGTGCTCCCTCTC-CATTTCT
*
14573859 TTTTC
63 TCTTC
* * * * * *
14573864 TCTTTCTCTTTCTTTTTTCTCTATCCTTTC-TCTCCTCGT-CACTGTGCTCACTCTCTATTTCTT
1 TCTTTCTCTTTCTTTTTCCTCTCT-CTTTCTTCTCTTC-TCCGCTGTGCTCCCTCTCCATTTCTT
14573927 CTTC
64 CTTC
* * * * *
14573931 TCTTTCTTTTTCTTTTTCCTCTCTC-TT-TTCTCTCCACATCG-TCGTGCTCACTCTCTC-TTAC
1 TCTTTCTCTTTCTTTTTCCTCTCTCTTTCTTCTCTTCTC--CGCT-GTGCTCCCTCTC-CATTTC
*
14573992 TTATTC
62 TTCTTC
* *
14573998 TCTTTCTCTTTCTTTTTCCTTTCTCCTTTC-TCTCCTCAT-CG-TCGTGCTCCCTCTC
1 TCTTTCTCTTTCTTTTTCCTCTCT-CTTTCTTCTCTTC-TCCGCT-GTGCTCCCTCTC
14574053 TCTTTTCTCC
Statistics
Matches: 203, Mismatches: 31, Indels: 42
0.74 0.11 0.15
Matches are distributed among these distances:
64 1 0.00
65 15 0.07
66 37 0.18
67 133 0.66
68 2 0.01
69 14 0.07
70 1 0.00
ACGTcount: A:0.04, C:0.36, G:0.05, T:0.55
Consensus pattern (67 bp):
TCTTTCTCTTTCTTTTTCCTCTCTCTTTCTTCTCTTCTCCGCTGTGCTCCCTCTCCATTTCTTCT
TC
Found at i:14573869 original size:6 final size:6
Alignment explanation
Indices: 14573850--14573896 Score: 51
Period size: 6 Copynumber: 7.8 Consensus size: 6
14573840 TTGCTCCCTC
* * *
14573850 TCTCTT TCTTTT TCTCTT TCTCTT TCTTTTT TCTCTA TC-CTT TCTCT
1 TCTCTT TCTCTT TCTCTT TCTCTT TC-TCTT TCTCTT TCTCTT TCTCT
14573897 CCTCGTCACT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
5 4 0.12
6 24 0.73
7 5 0.15
ACGTcount: A:0.02, C:0.30, G:0.00, T:0.68
Consensus pattern (6 bp):
TCTCTT
Found at i:14573873 original size:18 final size:18
Alignment explanation
Indices: 14573850--14573894 Score: 65
Period size: 18 Copynumber: 2.5 Consensus size: 18
14573840 TTGCTCCCTC
*
14573850 TCTCTTTCTTTTTCTCTT
1 TCTCTTTCTTTTTCTCTA
14573868 TCTCTTTCTTTTTTCTCTA
1 TCTCTTTC-TTTTTCTCTA
14573887 TC-CTTTCT
1 TCTCTTTCT
14573895 CTCCTCGTCA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
17 1 0.04
18 13 0.52
19 11 0.44
ACGTcount: A:0.02, C:0.29, G:0.00, T:0.69
Consensus pattern (18 bp):
TCTCTTTCTTTTTCTCTA
Found at i:14573877 original size:134 final size:131
Alignment explanation
Indices: 14573658--14574034 Score: 388
Period size: 134 Copynumber: 2.8 Consensus size: 131
14573648 TTTTTCTCTC
* * *
14573658 CTTCTCTTCTTTTTCTTTCTTCC-CTCTCCTTTT-TCTCCTTTGTCG-TTGCTCCTTCTCTCCTT
1 CTTCTTTTCTTTTTCTTT-TTCCTCTCT-CTTTTCTCTCC-TCGTCGTTTGCTCCCTCTCT-C-T
* * * * *
14573720 CTTCTTTTTTTTCTTTCTC-TTCTTTCTTCCCTCT-CTTTCTTCTCTTC-TACCGCTGTGCTCCC
61 -TTC-TTTTTCTCTTTCTCTTTCTTT-TTCCCTATCCTTTC-TCTCCTCGT--CACTGTGCTCAC
*
14573782 TTTCCATTTCTT
120 TCTCCATTTCTT
*
14573794 CTTCTTTTCTCTTTCTTTTTCCTCTCTCTTTTCTCTCCTCGTCGTTTTGCTCCCTCTCTCTTTCT
1 CTTCTTTTCTTTTTCTTTTTCCTCTCTCTTTTCTCTCCTCGTCG-TTTGCTCCCTCTCTCTTTCT
* *
14573859 TTTTCTCTTTCTCTTTCTTTTTTCTCTATCCTTTCTCTCCTCGTCACTGTGCTCACTCTCTATTT
65 TTTTCTCTTTCTCTTTC-TTTTTCCCTATCCTTTCTCTCCTCGTCACTGTGCTCACTCTCCATTT
14573924 CTT
129 CTT
* * * * *
14573927 CTTCTCTTTCTTTTTCTTTTTCCTCTCTCTTTTCTCTCCACATCGTCGTGCTCACTCTCTCTTAC
1 CTTCT-TTTCTTTTTCTTTTTCCTCTCTCTTTTCTCTCCTCGTCGT-TTGCTCCCTCTCTCTTTC
* * *
14573992 TTATTCTCTTTCTCTTTCTTTTTCCTTTCTCCTTTCTCTCCTC
64 TTTTTCTCTTTCTCTTTCTTTTTCC-CTATCCTTTCTCTCCTC
14574035 ATCGTCGTGC
Statistics
Matches: 208, Mismatches: 22, Indels: 24
0.82 0.09 0.09
Matches are distributed among these distances:
133 45 0.22
134 101 0.49
135 24 0.12
136 26 0.12
137 12 0.06
ACGTcount: A:0.03, C:0.36, G:0.04, T:0.58
Consensus pattern (131 bp):
CTTCTTTTCTTTTTCTTTTTCCTCTCTCTTTTCTCTCCTCGTCGTTTGCTCCCTCTCTCTTTCTT
TTTCTCTTTCTCTTTCTTTTTCCCTATCCTTTCTCTCCTCGTCACTGTGCTCACTCTCCATTTCT
T
Found at i:14573960 original size:18 final size:17
Alignment explanation
Indices: 14573914--14573961 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 17
14573904 ACTGTGCTCA
14573914 CTCTCTATTTCTTCTTCT
1 CTCTCT-TTTCTTCTTCT
* *
14573932 CTTTCTTTTTCTTTTTCCT
1 CTCTC-TTTTCTTCTT-CT
14573951 CTCTCTTTTCT
1 CTCTCTTTTCT
14573962 CTCCACATCG
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
18 18 0.72
19 7 0.28
ACGTcount: A:0.02, C:0.31, G:0.00, T:0.67
Consensus pattern (17 bp):
CTCTCTTTTCTTCTTCT
Found at i:14574007 original size:18 final size:17
Alignment explanation
Indices: 14573984--14574022 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
14573974 GTGCTCACTC
14573984 TCTCTTACTTATTCTCTT
1 TCTCTTACTTATTC-CTT
* *
14574002 TCTCTTTCTTTTTCCTT
1 TCTCTTACTTATTCCTT
14574019 TCTC
1 TCTC
14574023 CTTTCTCTCC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 7 0.37
18 12 0.63
ACGTcount: A:0.05, C:0.31, G:0.00, T:0.64
Consensus pattern (17 bp):
TCTCTTACTTATTCCTT
Found at i:14574052 original size:134 final size:133
Alignment explanation
Indices: 14573772--14574053 Score: 395
Period size: 134 Copynumber: 2.1 Consensus size: 133
14573762 TCTTCTACCG
* * * *
14573772 CTGTGCTCCCTTTCCATTTCTTCTTCTTTTCTCTTTCTTTTTCCTCTCTCTTTTCTCTCCTCGTC
1 CTGTGCTCCCTCTCTATTTCTTCTTCTTTTCTCTTTCTTTTTCCTCTCTCTTTTCTCTCCACATC
** * * * * *
14573837 GTTTTGCTCCCTCTCTCTTTCTTTTTCTCTTTCTCTTTCTTTTTTCTCTATCCTTTCTCTCCTCG
66 GTCGTGCTCACTCTCTCTTACTTATTCTCTTTCTCTTTCTTTTTCCTCTATCCTTTCTCTCCTCA
14573902 TCA
131 TCA
* *
14573905 CTGTGCTCACTCTCTATTTCTTCTTCTCTTTCTTTTTCTTTTTCCTCTCTCTTTTCTCTCCACAT
1 CTGTGCTCCCTCTCTATTTCTTCTTCT-TTTCTCTTTCTTTTTCCTCTCTCTTTTCTCTCCACAT
* *
14573970 CGTCGTGCTCACTCTCTCTTACTTATTCTCTTTCTCTTTCTTTTTCCTTTCTCCTTTCTCTCCTC
65 CGTCGTGCTCACTCTCTCTTACTTATTCTCTTTCTCTTTCTTTTTCCTCTATCCTTTCTCTCCTC
14574035 ATC-
130 ATCA
*
14574038 GTCGTGCTCCCTCTCT
1 CT-GTGCTCCCTCTCT
14574054 CTTTTCTCCC
Statistics
Matches: 130, Mismatches: 17, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
133 25 0.19
134 105 0.81
ACGTcount: A:0.04, C:0.36, G:0.05, T:0.55
Consensus pattern (133 bp):
CTGTGCTCCCTCTCTATTTCTTCTTCTTTTCTCTTTCTTTTTCCTCTCTCTTTTCTCTCCACATC
GTCGTGCTCACTCTCTCTTACTTATTCTCTTTCTCTTTCTTTTTCCTCTATCCTTTCTCTCCTCA
TCA
Found at i:14574053 original size:67 final size:67
Alignment explanation
Indices: 14573788--14574057 Score: 346
Period size: 67 Copynumber: 4.0 Consensus size: 67
14573778 TCCCTTTCCA
* * * ** *
14573788 TTTCTTCTTCT-TTTCTCTTTCTTTTTCCTCTCTCTTTTCTCTCCTCGTCGTTTTGCTCCCTCTC
1 TTTCTTATTCTCTTTCTCTTTCTTTTTCCTCTCTCCTTTCTCTCCTCATCGTCGTGCTCACTCTC
14573852 TC
66 TC
* * * * *
14573854 TTTCTTTTTCTCTTTCTCTTTCTTTTTTCTCTATCCTTTCTCTCCTCGTC-ACTGTGCTCACTCT
1 TTTCTTATTCTCTTTCTCTTTCTTTTTCCTCTCTCCTTTCTCTCCTCATCGTC-GTGCTCACTCT
*
14573918 CTA
65 CTC
* * * *
14573921 TTTCTTCTTCTCTTTCTTTTTCTTTTTCCTCTCTCTTTTCTCTCCACATCGTCGTGCTCACTCTC
1 TTTCTTATTCTCTTTCTCTTTCTTTTTCCTCTCTCCTTTCTCTCCTCATCGTCGTGCTCACTCTC
14573986 TC
66 TC
* * *
14573988 TTACTTATTCTCTTTCTCTTTCTTTTTCCTTTCTCCTTTCTCTCCTCATCGTCGTGCTCCCTCTC
1 TTTCTTATTCTCTTTCTCTTTCTTTTTCCTCTCTCCTTTCTCTCCTCATCGTCGTGCTCACTCTC
14574053 TC
66 TC
14574055 TTT
1 TTT
14574058 TCTCCCCCTC
Statistics
Matches: 175, Mismatches: 26, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
66 10 0.06
67 164 0.94
68 1 0.01
ACGTcount: A:0.04, C:0.35, G:0.04, T:0.57
Consensus pattern (67 bp):
TTTCTTATTCTCTTTCTCTTTCTTTTTCCTCTCTCCTTTCTCTCCTCATCGTCGTGCTCACTCTC
TC
Found at i:14574728 original size:32 final size:32
Alignment explanation
Indices: 14574663--14574728 Score: 96
Period size: 32 Copynumber: 2.1 Consensus size: 32
14574653 TGAGGAATAA
* *
14574663 TTCATATCACCTAAATAATTCGTATGCTATTT
1 TTCATATCACCTAAATAATTCATAAGCTATTT
* *
14574695 TTCATATCACCTAAATAATTTATAAGCTTTTT
1 TTCATATCACCTAAATAATTCATAAGCTATTT
14574727 TT
1 TT
14574729 TTATTTGGCT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.32, C:0.17, G:0.05, T:0.47
Consensus pattern (32 bp):
TTCATATCACCTAAATAATTCATAAGCTATTT
Found at i:14575066 original size:24 final size:24
Alignment explanation
Indices: 14575039--14575087 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
14575029 TTGATAGAAA
14575039 GAAAAATTTTACCCTTAATTATGT
1 GAAAAATTTTACCCTTAATTATGT
14575063 GAAAAATTTTACCCTTAATTATGT
1 GAAAAATTTTACCCTTAATTATGT
14575087 G
1 G
14575088 TTGTCCTTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.12, G:0.10, T:0.41
Consensus pattern (24 bp):
GAAAAATTTTACCCTTAATTATGT
Found at i:14577906 original size:21 final size:21
Alignment explanation
Indices: 14577867--14577906 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
14577857 ACTCTTTTTC
* **
14577867 TTCTTCCAATTTTCCTCTCTT
1 TTCTTCCAATTATAATCTCTT
14577888 TTCTTCCAATTATAATCTC
1 TTCTTCCAATTATAATCTC
14577907 ACTCAATTTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.17, C:0.30, G:0.00, T:0.53
Consensus pattern (21 bp):
TTCTTCCAATTATAATCTCTT
Found at i:14579590 original size:450 final size:450
Alignment explanation
Indices: 14578727--14579669 Score: 1355
Period size: 451 Copynumber: 2.1 Consensus size: 450
14578717 CGTTAAACGG
14578727 CTTAGGCAAAAATTAGGTCCCGTA-AAA-AAAGAAAGAATATTAAGTTGAGAATCCTTAAAATGA
1 CTTAGGCAAAAATTAGGT-CC-TACAAAGAAAGAAAGAATATTAAGTTGAGAATCCTTAAAATGA
14578790 CAATTTAGGAAAAAGTTAGAATGAAAAAAAAAAAAAACACAAGAACTACGTTACGACTTGATCCT
64 CAATTTAGGAAAAAGTTAGAATGAAAAAAAAAAAAAACACAAGAACTACGTTACGACTTGATCCT
* * * * *
14578855 TTATATTAGAGGGTACGTAGGTAGCTTGGTCTCAAAGCCAAGTTCAGTCAACCCAAAAAACAAAA
129 TCATATTAGAAGGTACGTACGCAACTTGGTCTCAAAGCCAAGTTCAGTCAACCCAAAAAACAAAA
* * *
14578920 AGTCTCTTTGATTATAGATAATTCAAACCTTTGCCATTTTGAAATTGCCTAGTTGACGACGATAA
194 AATCTCTTTGATTAAAGATAATTCAAACCTTTGCCATTTTGAAATTGCCAAGTTGACGACGATAA
*
14578985 TTGAAGAAGTTTACACTATCAATTGCAAGTGAAGTAAAGAAGACTTACTGCTTAAGTCCACTCCT
259 TTGAAGAAGTTCACACTATCAATTGCAAGTGAAGTAAAGAAGACTTACTGCTTAAGTCCACTCCT
* * * * *
14579050 CACACTCAGCCCAATCAGTGGCAAATTCTTGAAGCGTTCCAATGCATGAATATTAGTTCCTCCTC
324 CACAATCAGCCCAATCAATGACAAATTCTTGAAGCGTTACAATGCATGAATATCAGTTCCTCCTC
* * *
14579115 GGTAAAAGCTTAAACTGCCAATAAAAAAGAACCGGTTAAACCAAACATCCTTAATAGGAC-A
389 AGTAAAAGCTTAAACTGCCAATAAAAAAGAACCGCTTAAACCAAAAATCCTTAATAGGACGA
*
14579176 GGTTAGGCAAAAATTAGGTCCTACAAAGAAAGAAAGAATATTAAGTTGAGAATCCTTAAAATGAC
1 -CTTAGGCAAAAATTAGGTCCTACAAAGAAAGAAAGAATATTAAGTTGAGAATCCTTAAAATGAC
* *
14579241 AATTTAGGAAAAAGTTAGAATGAAAAAAAAAAAAAAACACAAGAACTATGTTACGAGTTGATCCT
65 AATTTAGGAAAAAGTTAGAATG-AAAAAAAAAAAAAACACAAGAACTACGTTACGACTTGATCCT
*
14579306 TCATATTAGAAGGTACGTACGCAACTTGGTCTCATTA-CCAAGTTCAGTCAACCCAAAAAACAAA
129 TCATATTAGAAGGTACGTACGCAACTTGGTCTCA-AAGCCAAGTTCAGTCAACCCAAAAAACAAA
* * * *
14579370 AAATGTCTTTGATTAAAGATAATTCAAATCTTTTCCATTTTGAAATTGCCAAGTTGGCGTA-GAT
193 AAATCTCTTTGATTAAAGATAATTCAAACCTTTGCCATTTTGAAATTGCCAAGTTGACG-ACGAT
* * * * * * * *
14579434 ATTTTAAGATGTTCATACTATCAATTGCTAGTGAAGTAAAGAAGACTTATTGCTTGAGTCTACTC
257 AATTGAAGAAGTTCACACTATCAATTGCAAGTGAAGTAAAGAAGACTTACTGCTTAAGTCCACTC
*** * *
14579499 CTTGGAATC-GCCCAATCAATTACAAATTCTTGAAGCGTTACAATGCATGAATATCAGTTTCTCC
322 CTCACAATCAGCCCAATCAATGACAAATTCTTGAAGCGTTACAATGCATGAATATCAGTTCCTCC
* ** *
14579563 TCAGTAAAAGCTTAAACTGCCAATAAAAAAGAGCTTCTTCAACCAAAAATCCTTAATAGGACGA
387 TCAGTAAAAGCTTAAACTGCCAATAAAAAAGAACCGCTTAAACCAAAAATCCTTAATAGGACGA
* *
14579627 CTTAGGC-AAAATTAGGTTCC-AC-AAGTAAAGAATGACTATTAAG
1 CTTAGGCAAAAATTAGG-TCCTACAAAG-AAAGAAAGAATATTAAG
14579670 NAATGCATGA
Statistics
Matches: 440, Mismatches: 45, Indels: 17
0.88 0.09 0.03
Matches are distributed among these distances:
448 5 0.01
449 31 0.07
450 189 0.43
451 213 0.48
452 2 0.00
ACGTcount: A:0.40, C:0.17, G:0.16, T:0.27
Consensus pattern (450 bp):
CTTAGGCAAAAATTAGGTCCTACAAAGAAAGAAAGAATATTAAGTTGAGAATCCTTAAAATGACA
ATTTAGGAAAAAGTTAGAATGAAAAAAAAAAAAAACACAAGAACTACGTTACGACTTGATCCTTC
ATATTAGAAGGTACGTACGCAACTTGGTCTCAAAGCCAAGTTCAGTCAACCCAAAAAACAAAAAA
TCTCTTTGATTAAAGATAATTCAAACCTTTGCCATTTTGAAATTGCCAAGTTGACGACGATAATT
GAAGAAGTTCACACTATCAATTGCAAGTGAAGTAAAGAAGACTTACTGCTTAAGTCCACTCCTCA
CAATCAGCCCAATCAATGACAAATTCTTGAAGCGTTACAATGCATGAATATCAGTTCCTCCTCAG
TAAAAGCTTAAACTGCCAATAAAAAAGAACCGCTTAAACCAAAAATCCTTAATAGGACGA
Found at i:14579774 original size:131 final size:130
Alignment explanation
Indices: 14579540--14579800 Score: 459
Period size: 131 Copynumber: 2.0 Consensus size: 130
14579530 GAAGCGTTAC
14579540 AATGCATGAATATCAGTTTCTCCTCAGTAAAAGCTTAAACTGCCAATAAAAAAGAGCTTCTTCAA
1 AATGCATGAATATCAGTTTCTCCTCAGTAAAAGCTTAAACTGCCAATAAAAAAGAGCTTCTTCAA
* **
14579605 CCAAAAATCCTTAATAGGACGACTTAGGCAAAATTAGGTTCCACAAGTAAAGAATGACTATTAAG
66 CCAAAAATCCTTAATAGGACGACTTAGGCAAAATTAGGTCCCACAAAAAAAGAATGACTATTAAG
14579670 NAATGCATGAATATCAGTTTCTCCTCAGTAAAAGCTTAAACTGCCAATAAAAAAGAGCTTCTTCA
1 -AATGCATGAATATCAGTTTCTCCTCAGTAAAAGCTTAAACTGCCAATAAAAAAGAGCTTCTTCA
* **
14579735 ACCAAAAATCCTTAATAGGATGACTTAGGCAAAATTAGGTCCCGGAAAAAAAGAATGACTATTAA
65 ACCAAAAATCCTTAATAGGACGACTTAGGCAAAATTAGGTCCCACAAAAAAAGAATGACTATTAA
14579800 G
130 G
14579801 TTGAAAATCC
Statistics
Matches: 124, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
131 124 1.00
ACGTcount: A:0.42, C:0.18, G:0.15, T:0.25
Consensus pattern (130 bp):
AATGCATGAATATCAGTTTCTCCTCAGTAAAAGCTTAAACTGCCAATAAAAAAGAGCTTCTTCAA
CCAAAAATCCTTAATAGGACGACTTAGGCAAAATTAGGTCCCACAAAAAAAGAATGACTATTAAG
Found at i:14580193 original size:581 final size:580
Alignment explanation
Indices: 14579090--14580250 Score: 1728
Period size: 581 Copynumber: 2.0 Consensus size: 580
14579080 GAAGCGTTCC
* * *
14579090 AATGCATGAATATTAGTTCCTCCTCGGTAAAAGCTTAAACTGCCAATAAAAAAGAACCGGTTAAA
1 AATGCATGAATATCAGTTCCTCCTCAGTAAAAGCTTAAACTGCCAATAAAAAAGAACCGCTTAAA
* * * *
14579155 CCAAACATCCTTAATAGGACAGGTTAGGCAAAAATTAGGTCCTACAAAGAAAGAAAGAATATTAA
66 CCAAAAATCCTTAATAGGACAGCTTAGGCAAAAATTAGGTCCCACAAAAAAAGAAAGAATATTAA
* * *
14579220 GTTGAGAATCCTTAAAATGACAATTTAGGAAAAAGTTAGAATGAAAAAAAAAAAAAAACACAAGA
131 GTTGAAAATCCTTAAAAAGACAACTTAGGAAAAAGTTAGAATGAAAAAAAAAAAAAAACACAAGA
* * * * *
14579285 ACTATGTTACGAGTTGATCCTTCATATTAGAAGGTACGTACGCAACTTGGTCTCATTACCAAGTT
196 ACTACGTTACGACTGGATCCTTCATATGAGAAGGTACGTACGCAACTTGGTCTCATAACCAAGTT
* *
14579350 CAGTCAACCCAAAAAACAAAAAATGTCTTTGATTAAAGATAATTCAAATCTTTTCCATTTTGAAA
261 CAGTCAACCCAAAAAACAAAAAATGTCTTTGATTAAAGATAATTCAAATCTTTGCCAGTTTGAAA
** * * * * *
14579415 TTGCCAAGTTGGCGTAGATATTTTAAGATGTTCATACTATCAATTGCTAGTGAAGTAAAGAAGAC
326 TTGCCAAGTTAACGTAGATAATTGAAGAAGTTCATACTAACAATTGCTAGTGAAGTAAAAAAGAC
* ** *
14579480 TTATTGCTTGAGTCTACTCCTTGGAATCGCCCAATCAATTACAAATTCTTGAAGCGTTACAATGC
391 TAATTGCTTGAGTCTACTCCTTACAATCGCCCAATCAATTACAAATTCTTGAAGCGTTACAATAC
* *
14579545 ATGAATATCAGTTTCTCCTCAGTAAAAGCTTAAACTGCCAATAAAAAAGAGCTTCTTCAACCAAA
456 ATGAATATCAGTTCCTCCTCAGTAAAAGCTTAAACTGCCAATAAAAAAGAGCTCCTTCAACCAAA
14579610 AATCCTTAATAGGACGACTTAGGCAAAATTAGGTTCCACAAGTAAAGAATGACTATTAAG
521 AATCCTTAATAGGACGACTTAGGCAAAATTAGGTTCCACAAGTAAAGAATGACTATTAAG
* * ** *
14579670 NAATGCATGAATATCAGTTTCTCCTCAGTAAAAGCTTAAACTGCCAATAAAAAAGAGCTTCTTCA
1 -AATGCATGAATATCAGTTCCTCCTCAGTAAAAGCTTAAACTGCCAATAAAAAAGAACCGCTTAA
* ** * *
14579735 ACCAAAAATCCTTAATAGGA-TGACTTAGGC-AAAATTAGGTCCCGGAAAAAAAGAATGACTATT
65 ACCAAAAATCCTTAATAGGACAG-CTTAGGCAAAAATTAGGTCCCACAAAAAAAGAAAGAATATT
* *
14579798 AAGTTGAAAATCCTTAAAAAGACGACTTAGGCAAAAGTTAGAATGTAAAAAAAAAAAAAAA-ACA
129 AAGTTGAAAATCCTTAAAAAGACAACTTAGGAAAAAGTTAGAATG-AAAAAAAAAAAAAAACACA
* * *
14579862 AGAAACTACGTTACGACTGGATCCTTCATATGAGAAGGTACGTAGGTAGCTTGGTCTCA-AAGCC
193 AG-AACTACGTTACGACTGGATCCTTCATATGAGAAGGTACGTACGCAACTTGGTCTCATAA-CC
14579926 AAGTTCAGTCAACCCAAAAAACAAAAAATGTCTTTGATTAAAGATAATTCAAATCTTTGCCAGTT
256 AAGTTCAGTCAACCCAAAAAACAAAAAATGTCTTTGATTAAAGATAATTCAAATCTTTGCCAGTT
* *
14579991 TGAAATTGCCAAGTTAACGTTGATAATTGAAGAAGTTCATACTAACAATTGCTAGTGAATTAAAA
321 TGAAATTGCCAAGTTAACGTAGATAATTGAAGAAGTTCATACTAACAATTGCTAGTGAAGTAAAA
*
14580056 AAGACTAATTGCTTGAGTCTACT-CTTCACAATCAGCCCAATCAATT-GAAATTCTTGAAGCGTT
386 AAGACTAATTGCTTGAGTCTACTCCTT-ACAATC-GCCCAATCAATTACAAATTCTTGAAGCGTT
*
14580119 ACAATACATGAATATTAGTTCCTCCTC-GATAAAAGCTTAAACT-CTCAATAAAAAAGAGC-CCA
449 ACAATACATGAATATCAGTTCCTCCTCAG-TAAAAGCTTAAACTGC-CAATAAAAAAGAGCTCC-
14580181 TTCAACCAAAAATCCTTAATAGGACGACTTAGGCAAAATTAGGTTCCACAAGTAAAGAATGACTA
511 TTCAACCAAAAATCCTTAATAGGACGACTTAGGCAAAATTAGGTTCCACAAGTAAAGAATGACTA
14580246 TTAAG
576 TTAAG
14580251 TTCAAAATCC
Statistics
Matches: 522, Mismatches: 49, Indels: 18
0.89 0.08 0.03
Matches are distributed among these distances:
580 80 0.15
581 430 0.82
582 12 0.02
ACGTcount: A:0.41, C:0.17, G:0.15, T:0.27
Consensus pattern (580 bp):
AATGCATGAATATCAGTTCCTCCTCAGTAAAAGCTTAAACTGCCAATAAAAAAGAACCGCTTAAA
CCAAAAATCCTTAATAGGACAGCTTAGGCAAAAATTAGGTCCCACAAAAAAAGAAAGAATATTAA
GTTGAAAATCCTTAAAAAGACAACTTAGGAAAAAGTTAGAATGAAAAAAAAAAAAAAACACAAGA
ACTACGTTACGACTGGATCCTTCATATGAGAAGGTACGTACGCAACTTGGTCTCATAACCAAGTT
CAGTCAACCCAAAAAACAAAAAATGTCTTTGATTAAAGATAATTCAAATCTTTGCCAGTTTGAAA
TTGCCAAGTTAACGTAGATAATTGAAGAAGTTCATACTAACAATTGCTAGTGAAGTAAAAAAGAC
TAATTGCTTGAGTCTACTCCTTACAATCGCCCAATCAATTACAAATTCTTGAAGCGTTACAATAC
ATGAATATCAGTTCCTCCTCAGTAAAAGCTTAAACTGCCAATAAAAAAGAGCTCCTTCAACCAAA
AATCCTTAATAGGACGACTTAGGCAAAATTAGGTTCCACAAGTAAAGAATGACTATTAAG
Found at i:14588288 original size:19 final size:19
Alignment explanation
Indices: 14588264--14588301 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
14588254 ACTGTCAACC
*
14588264 CTCAAATTACACTCCAATA
1 CTCAAATCACACTCCAATA
*
14588283 CTCAAATCATACTCCAATA
1 CTCAAATCACACTCCAATA
14588302 AGTTAAATGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.42, C:0.32, G:0.00, T:0.26
Consensus pattern (19 bp):
CTCAAATCACACTCCAATA
Found at i:14588662 original size:20 final size:20
Alignment explanation
Indices: 14588637--14588677 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
14588627 TTGACACTTG
*
14588637 TTGATTTTTATGAAATGAAA
1 TTGATTTATATGAAATGAAA
14588657 TTGATTTATATGAAATGAAA
1 TTGATTTATATGAAATGAAA
14588677 T
1 T
14588678 GAGATTTGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.41, C:0.00, G:0.15, T:0.44
Consensus pattern (20 bp):
TTGATTTATATGAAATGAAA
Found at i:14588693 original size:25 final size:25
Alignment explanation
Indices: 14588646--14588695 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
14588636 GTTGATTTTT
*
14588646 ATGAAATGAAATTGATTTATATGAA
1 ATGAAATGAAATTGATGTATATGAA
*
14588671 ATGAAATGAGATTTGATGT-TATGAA
1 ATGAAATGA-AATTGATGTATATGAA
14588696 TCATATTATG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 15 0.68
26 7 0.32
ACGTcount: A:0.44, C:0.00, G:0.20, T:0.36
Consensus pattern (25 bp):
ATGAAATGAAATTGATGTATATGAA
Found at i:14591926 original size:25 final size:25
Alignment explanation
Indices: 14591880--14591927 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
14591870 TCATAAACGA
*
14591880 AAAATAAATAAAAATGATAAAAATT
1 AAAATAAAGAAAAATGATAAAAATT
14591905 AAAATAAAGAAGAAATGA-AAAAA
1 AAAATAAAGAA-AAATGATAAAAA
14591928 GAAGGGAGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 15 0.71
26 6 0.29
ACGTcount: A:0.75, C:0.00, G:0.08, T:0.17
Consensus pattern (25 bp):
AAAATAAAGAAAAATGATAAAAATT
Found at i:14603553 original size:12 final size:13
Alignment explanation
Indices: 14603528--14603558 Score: 55
Period size: 12 Copynumber: 2.5 Consensus size: 13
14603518 ATAAGAATAG
14603528 AAAATATGATAAT
1 AAAATATGATAAT
14603541 AAAATAT-ATAAT
1 AAAATATGATAAT
14603553 AAAATA
1 AAAATA
14603559 AAAATAATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (13 bp):
AAAATATGATAAT
Found at i:14607170 original size:2 final size:2
Alignment explanation
Indices: 14607163--14607199 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
14607153 TGTATATGTG
14607163 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
14607200 AAAAGAGTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:14607492 original size:41 final size:42
Alignment explanation
Indices: 14607388--14607494 Score: 144
Period size: 43 Copynumber: 2.5 Consensus size: 42
14607378 TCAATTATTG
* ** * *
14607388 AGATATAATTTGTTATGATAAATTATTGGATTAGATTGTTAAA
1 AGATATAATATGTTATGATAGGTAATTGGATTAGACTGTT-AA
*
14607431 ATATATAATATGTTATGATAGGTAATTGGATTAGACTGTT-A
1 AGATATAATATGTTATGATAGGTAATTGGATTAGACTGTTAA
14607472 AGATATAATATGTTATGATAGGT
1 AGATATAATATGTTATGATAGGT
14607495 TTAGATTTAT
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
41 23 0.40
43 34 0.60
ACGTcount: A:0.38, C:0.01, G:0.19, T:0.42
Consensus pattern (42 bp):
AGATATAATATGTTATGATAGGTAATTGGATTAGACTGTTAA
Found at i:14613482 original size:24 final size:24
Alignment explanation
Indices: 14613453--14613499 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
14613443 AATTGGCACA
*
14613453 TACTGGAAAGTAATTTATTCAAAT
1 TACTGGAAAGGAATTTATTCAAAT
14613477 TACTGGAAAGGAATTTATTCAAA
1 TACTGGAAAGGAATTTATTCAAA
14613500 CCATTAATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.43, C:0.09, G:0.15, T:0.34
Consensus pattern (24 bp):
TACTGGAAAGGAATTTATTCAAAT
Found at i:14619533 original size:68 final size:68
Alignment explanation
Indices: 14619417--14619696 Score: 296
Period size: 68 Copynumber: 4.1 Consensus size: 68
14619407 TTATACACAA
* ** * * ** *
14619417 CTCATATAGTATGT-GAGATCAACATCACATATGTGGCAACATAACATATATCAT-GTGCTCATC
1 CTCATATAGTATGTGGA-AACAACATCACATACATGTCAACATAACATATATC-TCATGCTTGTT
*
14619480 CTTAC
64 CTTAT
* * * *** *
14619485 CTC-TCACAGTATGTGGAAACAACATCACATACATGTCATCATAGCATATATCTCCCACTTGTTT
1 CTCAT-ATAGTATGTGGAAACAACATCACATACATGTCAACATAACATATATCTCATGCTTGTTC
14619549 TTAT
65 TTAT
* *
14619553 CTCATATAGTATGTGGAAACAACATCAAATACATGTTAACATAACATATATCTCATGCTTGTTCT
1 CTCATATAGTATGTGGAAACAACATCACATACATGTCAACATAACATATATCTCATGCTTGTTCT
14619618 TAT
66 TAT
* * * * * *
14619621 CTCATATAATATGTGGAAACAACATCACATACATGTCATCATAGCATATAACCCATTCTTGTTCT
1 CTCATATAGTATGTGGAAACAACATCACATACATGTCAACATAACATATATCTCATGCTTGTTCT
14619686 TAT
66 TAT
14619689 CTCATATA
1 CTCATATA
14619697 TGGCATACAT
Statistics
Matches: 176, Mismatches: 32, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
67 2 0.01
68 171 0.97
69 3 0.02
ACGTcount: A:0.34, C:0.22, G:0.10, T:0.34
Consensus pattern (68 bp):
CTCATATAGTATGTGGAAACAACATCACATACATGTCAACATAACATATATCTCATGCTTGTTCT
TAT
Found at i:14640730 original size:5 final size:5
Alignment explanation
Indices: 14640720--14640755 Score: 54
Period size: 5 Copynumber: 7.2 Consensus size: 5
14640710 CTATTCAACC
* *
14640720 TAACT TGACT TAACT TAACT TAATT TAACT TAACT T
1 TAACT TAACT TAACT TAACT TAACT TAACT TAACT T
14640756 GGGGCCACAC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.36, C:0.17, G:0.03, T:0.44
Consensus pattern (5 bp):
TAACT
Found at i:14645620 original size:52 final size:54
Alignment explanation
Indices: 14645483--14645623 Score: 153
Period size: 52 Copynumber: 2.6 Consensus size: 54
14645473 TGGCCCTCAT
* * *
14645483 CTCATGTGCCCTCCCACACCACACATAGCTGGATATAGACCATTGCCAATCATTAG
1 CTCATGTGCACTCCCACACCACACATAGCTGGATATACACCA-T-CCAATCATCAG
* * * * *
14645539 CTCATGTGTACTCCCACA-CAGCACGTAGCTGG-TATCCCCCA-CCGATCATCAG
1 CTCATGTGCACTCCCACACCA-CACATAGCTGGATATACACCATCCAATCATCAG
*
14645591 CTCATGTGCACTCCCACACCCCACATAGCTGGA
1 CTCATGTGCACTCCCACACCACACATAGCTGGA
14645624 ATCATCATCG
Statistics
Matches: 71, Mismatches: 11, Indels: 9
0.78 0.12 0.10
Matches are distributed among these distances:
52 36 0.51
53 1 0.01
55 8 0.11
56 26 0.37
ACGTcount: A:0.26, C:0.38, G:0.16, T:0.21
Consensus pattern (54 bp):
CTCATGTGCACTCCCACACCACACATAGCTGGATATACACCATCCAATCATCAG
Found at i:14651518 original size:17 final size:17
Alignment explanation
Indices: 14651498--14651534 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
14651488 GTTTGCTTTG
14651498 TTATATTTTATTAT-TAT
1 TTAT-TTTTATTATATAT
14651515 TTATTTTTATTATATAT
1 TTATTTTTATTATATAT
14651532 TTA
1 TTA
14651535 AAAAAGAGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 9 0.47
17 10 0.53
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (17 bp):
TTATTTTTATTATATAT
Found at i:14654284 original size:20 final size:20
Alignment explanation
Indices: 14654259--14654299 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
14654249 GCTATAAAGA
*
14654259 TCATTTTTCCAGCAGCTTCT
1 TCATTTCTCCAGCAGCTTCT
*
14654279 TCATTTCTCCCGCAGCTTCT
1 TCATTTCTCCAGCAGCTTCT
14654299 T
1 T
14654300 TTTCTTCTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.12, C:0.34, G:0.10, T:0.44
Consensus pattern (20 bp):
TCATTTCTCCAGCAGCTTCT
Found at i:14657885 original size:22 final size:22
Alignment explanation
Indices: 14657860--14657902 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
14657850 CTCGCTACAG
14657860 CAAGATTTCATTCTCACTGCAA
1 CAAGATTTCATTCTCACTGCAA
*
14657882 CAAGATTTCATTCTCGCTGCA
1 CAAGATTTCATTCTCACTGCA
14657903 GCGAGTAACA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.28, C:0.28, G:0.12, T:0.33
Consensus pattern (22 bp):
CAAGATTTCATTCTCACTGCAA
Found at i:14658200 original size:2 final size:2
Alignment explanation
Indices: 14658193--14658224 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
14658183 TCTTTATGGC
14658193 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14658225 TTACAAGCAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14658431 original size:36 final size:36
Alignment explanation
Indices: 14658304--14658432 Score: 168
Period size: 36 Copynumber: 3.6 Consensus size: 36
14658294 ATCAACACAT
* * ** * *
14658304 GTGCACTCCCACATCACACAATACTAGCACCGTCAT
1 GTGCACTCCCACACCGCACACCACCAGCACCGTCAC
*
14658340 GTGCACTCCCACAACGCACACCACCAGCACCGTCAC
1 GTGCACTCCCACACCGCACACCACCAGCACCGTCAC
* * *
14658376 ATGCACTCCCACACAGCACACCACCAGCATCGTCAC
1 GTGCACTCCCACACCGCACACCACCAGCACCGTCAC
14658412 GTGCACTCCCACACCGCACAC
1 GTGCACTCCCACACCGCACAC
14658433 ACTCGGTTAT
Statistics
Matches: 81, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
36 81 1.00
ACGTcount: A:0.29, C:0.47, G:0.12, T:0.12
Consensus pattern (36 bp):
GTGCACTCCCACACCGCACACCACCAGCACCGTCAC
Found at i:14658610 original size:2 final size:2
Alignment explanation
Indices: 14658603--14658635 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
14658593 TACTTATGGC
14658603 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
14658636 CAAGCATGCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:14664215 original size:40 final size:40
Alignment explanation
Indices: 14664159--14664274 Score: 160
Period size: 40 Copynumber: 2.9 Consensus size: 40
14664149 ATGAATTCAA
** * *
14664159 TAATATCTTAGTCTAAATCACCACATTAGACATTTGTTCCT
1 TAATA-CTTAGTCTAAATCACCACATTAGACATTCATACCG
* *
14664200 TAATACTTGGTCTAAATCACCATATTAGACATTCATACCG
1 TAATACTTAGTCTAAATCACCACATTAGACATTCATACCG
*
14664240 TAATATTTAGTCTAAATCACCACATTAGACATTCA
1 TAATACTTAGTCTAAATCACCACATTAGACATTCA
14664275 ATCAAGCAAA
Statistics
Matches: 66, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
40 61 0.92
41 5 0.08
ACGTcount: A:0.35, C:0.22, G:0.08, T:0.35
Consensus pattern (40 bp):
TAATACTTAGTCTAAATCACCACATTAGACATTCATACCG
Found at i:14665504 original size:20 final size:20
Alignment explanation
Indices: 14665476--14665514 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
14665466 AATCTATGTT
*
14665476 AAATGTATCAATACATTTGC
1 AAATCTATCAATACATTTGC
* *
14665496 AAATCTATCGATGCATTTG
1 AAATCTATCAATACATTTG
14665515 GTTATGGATT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (20 bp):
AAATCTATCAATACATTTGC
Found at i:14671691 original size:27 final size:27
Alignment explanation
Indices: 14671640--14671692 Score: 65
Period size: 27 Copynumber: 1.9 Consensus size: 27
14671630 TTGGAGTATA
14671640 AGGGCGAAATGATAATTTTGCCACCCCG
1 AGGGCGAAATGATAATTTT-CCACCCCG
14671668 AGGGC-AAATCGATAAATTTT-CACCC
1 AGGGCGAAAT-GAT-AATTTTCCACCC
14671693 TGACATTTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
27 9 0.39
28 8 0.35
29 6 0.26
ACGTcount: A:0.32, C:0.25, G:0.21, T:0.23
Consensus pattern (27 bp):
AGGGCGAAATGATAATTTTCCACCCCG
Found at i:14672836 original size:13 final size:13
Alignment explanation
Indices: 14672818--14672842 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14672808 GGAGAAATTG
14672818 TGATTTTGTAAAA
1 TGATTTTGTAAAA
14672831 TGATTTTGTAAA
1 TGATTTTGTAAA
14672843 TTTTTTGAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.48
Consensus pattern (13 bp):
TGATTTTGTAAAA
Found at i:14676043 original size:36 final size:36
Alignment explanation
Indices: 14675980--14676062 Score: 112
Period size: 36 Copynumber: 2.3 Consensus size: 36
14675970 CATTATCAAT
* * *
14675980 ATGCCTTTTTAGTAACATCAAGTGTAACCTTTACAAC
1 ATGCC-TTTTAATAACATCAAGCGTAACCTTCACAAC
* *
14676017 ATGCCTTTTAATAAGATTAAGCGTAACCTTCACAAC
1 ATGCCTTTTAATAACATCAAGCGTAACCTTCACAAC
14676053 ATGCCTTTTA
1 ATGCCTTTTA
14676063 CAAGATCAGG
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
36 36 0.88
37 5 0.12
ACGTcount: A:0.33, C:0.22, G:0.11, T:0.35
Consensus pattern (36 bp):
ATGCCTTTTAATAACATCAAGCGTAACCTTCACAAC
Found at i:14676079 original size:35 final size:36
Alignment explanation
Indices: 14676004--14676080 Score: 102
Period size: 36 Copynumber: 2.2 Consensus size: 36
14675994 ACATCAAGTG
* * * *
14676004 TAACCTTTACAACATGCCTTTTAATAAGATTAAGCG
1 TAACCTTCACAACATGCCTTTTAACAAGATCAAGCA
*
14676040 TAACCTTCACAACATGCCTTTT-ACAAGATCAGGCA
1 TAACCTTCACAACATGCCTTTTAACAAGATCAAGCA
14676075 TAACCT
1 TAACCT
14676081 CTATCAAGAC
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
35 15 0.42
36 21 0.58
ACGTcount: A:0.35, C:0.25, G:0.10, T:0.30
Consensus pattern (36 bp):
TAACCTTCACAACATGCCTTTTAACAAGATCAAGCA
Found at i:14686799 original size:45 final size:45
Alignment explanation
Indices: 14686738--14686831 Score: 120
Period size: 45 Copynumber: 2.1 Consensus size: 45
14686728 ATTAAATTTA
* *
14686738 AATAATACTTAATAATAT-TCTTTATTACATTTATTATATTCAAAT
1 AATAATACTTAATAATATGT-TTTATAACATTTATTATAGTCAAAT
* *
14686783 AATAATA-TTAAGTAATATGTTTTATAATATTTATTATAGTGAAAT
1 AATAATACTTAA-TAATATGTTTTATAACATTTATTATAGTCAAAT
14686828 AATA
1 AATA
14686832 TTGATATATT
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
44 4 0.09
45 38 0.88
46 1 0.02
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (45 bp):
AATAATACTTAATAATATGTTTTATAACATTTATTATAGTCAAAT
Found at i:14693926 original size:31 final size:30
Alignment explanation
Indices: 14693883--14693942 Score: 84
Period size: 31 Copynumber: 2.0 Consensus size: 30
14693873 GTGACAGCAT
* *
14693883 CGGTGGTGTGTGGTGTGGGAGTGCACATGC
1 CGGTGATGTGTGGTGTGGAAGTGCACATGC
*
14693913 CGGTGATGATGTGGTGTGGAAGTGTACATG
1 CGGTGATG-TGTGGTGTGGAAGTGCACATG
14693943 ATGATATTGC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 7 0.27
31 19 0.73
ACGTcount: A:0.15, C:0.10, G:0.47, T:0.28
Consensus pattern (30 bp):
CGGTGATGTGTGGTGTGGAAGTGCACATGC
Found at i:14701767 original size:24 final size:24
Alignment explanation
Indices: 14701735--14701789 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
14701725 AGGATTTTTT
*
14701735 TTTTTTTGGAT-TTTGATCTTGTGA
1 TTTTTTTGGATGTTTGAACTTG-GA
* *
14701759 TTTTTTTGGTTGTTTGAACTTGGT
1 TTTTTTTGGATGTTTGAACTTGGA
14701783 TTTTTTT
1 TTTTTTT
14701790 TTTGACCAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
24 18 0.67
25 9 0.33
ACGTcount: A:0.09, C:0.04, G:0.20, T:0.67
Consensus pattern (24 bp):
TTTTTTTGGATGTTTGAACTTGGA
Found at i:14701790 original size:25 final size:23
Alignment explanation
Indices: 14701733--14701790 Score: 62
Period size: 25 Copynumber: 2.4 Consensus size: 23
14701723 TTAGGATTTT
*
14701733 TTTTTTTTTGGATTTTGATCTTG
1 TTTTTTTTTGGATTTTGAACTTG
* *
14701756 TGATTTTTTTGGTTGTTTGAACTTGG
1 T-TTTTTTTTGGAT-TTTGAACTT-G
14701782 TTTTTTTTT
1 TTTTTTTTT
14701791 TTGACCAATT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
23 1 0.04
24 10 0.36
25 15 0.54
26 2 0.07
ACGTcount: A:0.09, C:0.03, G:0.19, T:0.69
Consensus pattern (23 bp):
TTTTTTTTTGGATTTTGAACTTG
Found at i:14702565 original size:59 final size:59
Alignment explanation
Indices: 14702352--14703488 Score: 1499
Period size: 59 Copynumber: 19.0 Consensus size: 59
14702342 AACAAATTCG
* * * * *
14702352 ATTAAAATTTCTAGGCTTAATCTAGGCTCGACCTATCTCACAATAGGTTTGGTTTGAATAAA
1 ATTAAAATTCCTAGACTTAATCTAGGCTCGACCTATCTCACAACAGGTTCGATTT--A-AAA
* * * *
14702414 ATTAAAATTCCTAAACTTAATTTAGGCTCAACCTATCTCACAACAGGTTTGATTTGAACAAA
1 ATTAAAATTCCTAGACTTAATCTAGGCTCGACCTATCTCACAACAGGTTCGATTT--A-AAA
* * * *
14702476 ATTAAAATTTCTAAACTTAATTTAGGCTCGACCTATCTCACAACAGGTTCAATTTAAAA
1 ATTAAAATTCCTAGACTTAATCTAGGCTCGACCTATCTCACAACAGGTTCGATTTAAAA
*
14702535 ATTAAAATTCCTAGACTTAATCTAGGCTCGACCTATCTTACAACAGGTTCGATTTAAAA
1 ATTAAAATTCCTAGACTTAATCTAGGCTCGACCTATCTCACAACAGGTTCGATTTAAAA
*
14702594 ATTAAAATTCCTAGACTTAATCTAGGCTCGACCTATCTCACAACAAGTTCGATTTAAAA
1 ATTAAAATTCCTAGACTTAATCTAGGCTCGACCTATCTCACAACAGGTTCGATTTAAAA
* * * * *
14702653 ATGAAAATTCCTACACTTAATCTGGGCTCAACCTATCTCACAACAGGTTCTATTTAAAA
1 ATTAAAATTCCTAGACTTAATCTAGGCTCGACCTATCTCACAACAGGTTCGATTTAAAA
* *
14702712 A-TGAAATTCGTAGACTTAATCTAGGCTCGACCTATCTCACAACAGGTTCGATTTAAAA
1 ATTAAAATTCCTAGACTTAATCTAGGCTCGACCTATCTCACAACAGGTTCGATTTAAAA
* *
14702770 ATTAAAATTCCTAGACTTAATTTAGGCTTGACCTATCTCACAAACAGGTTCGATTTAAAA
1 ATTAAAATTCCTAGACTTAATCTAGGCTCGACCTATCTCAC-AACAGGTTCGATTTAAAA
* * *
14702830 ATTAAAACTCCTAGACTTAATCTAGGCGCGACCTATTTCACAACAGGTTCGATTTAAACAAA
1 ATTAAAATTCCTAGACTTAATCTAGGCTCGACCTATCTCACAACAGGTTCGATTT--A-AAA
* * * *
14702892 ATTAAAATTCCT-GAACTTAATTTAGACTCGACCTATCTCACAACAAGTTTGATTTAAAA
1 ATTAAAATTCCTAG-ACTTAATCTAGGCTCGACCTATCTCACAACAGGTTCGATTTAAAA
*
14702951 ATTAAAATTCCTAGACTTAATCTAGGCTTGACCTATCTCACAAACAGGTTCGATTTAAAA
1 ATTAAAATTCCTAGACTTAATCTAGGCTCGACCTATCTCAC-AACAGGTTCGATTTAAAA
* * *
14703011 ATTAAAACTCCTAGACTTAATCTAGGCGCGACCTATTTCACAACAGGTTCGATTTAAACAAA
1 ATTAAAATTCCTAGACTTAATCTAGGCTCGACCTATCTCACAACAGGTTCGATTT--A-AAA
* * * *
14703073 ATTAAAATTCCT-GAACTTAATTTAGACTCGACCTATCTCACAACAAGTTTGATTTAAAA
1 ATTAAAATTCCTAG-ACTTAATCTAGGCTCGACCTATCTCACAACAGGTTCGATTTAAAA
*
14703132 ATTAAAATTCCTAGACTTAATCTAGGCTTGACCTATCTCACAAACAGGTTCGATTTAAAA
1 ATTAAAATTCCTAGACTTAATCTAGGCTCGACCTATCTCAC-AACAGGTTCGATTTAAAA
* * *
14703192 ATTAAAACTCCTAGACTTAATCTAGGCGCGACCTATTTCACAACAGGTTCGATTTAAACAAA
1 ATTAAAATTCCTAGACTTAATCTAGGCTCGACCTATCTCACAACAGGTTCGATTT--A-AAA
* * * * *
14703254 ATTGAAATTCCTAAACTTAATTTAGGCTCGACCTATCTCACAACAGGTTC-AATTGAAA
1 ATTAAAATTCCTAGACTTAATCTAGGCTCGACCTATCTCACAACAGGTTCGATTTAAAA
* * *
14703312 ATTGAAATTCCTAAACTTAATCTAGACTCGACCTATCTCACAACAGGTTCGATTTAAAA
1 ATTAAAATTCCTAGACTTAATCTAGGCTCGACCTATCTCACAACAGGTTCGATTTAAAA
* *
14703371 ATTAAAATTTCTAGACTTAATCTAGGCTCGACCTATCTCACAAACAGGTTCGATTTTGAAA
1 ATTAAAATTCCTAGACTTAATCTAGGCTCGACCTATCTCAC-AACAGGTTCGA-TTTAAAA
* ** * * * * *
14703432 ATTAAAATTCCTAAACTCGATCTAGACTCAACCTATCTTAAAATAGGTTCGATTTAA
1 ATTAAAATTCCTAGACTTAATCTAGGCTCGACCTATCTCACAACAGGTTCGATTTAA
14703489 TTCATCGAGG
Statistics
Matches: 955, Mismatches: 100, Indels: 43
0.87 0.09 0.04
Matches are distributed among these distances:
58 102 0.11
59 370 0.39
60 186 0.19
61 47 0.05
62 250 0.26
ACGTcount: A:0.37, C:0.20, G:0.11, T:0.31
Consensus pattern (59 bp):
ATTAAAATTCCTAGACTTAATCTAGGCTCGACCTATCTCACAACAGGTTCGATTTAAAA
Found at i:14702966 original size:181 final size:177
Alignment explanation
Indices: 14702352--14703469 Score: 1470
Period size: 181 Copynumber: 6.2 Consensus size: 177
14702342 AACAAATTCG
* * * * *
14702352 ATTAAAATTTCTAGGCTTAATCTAGGCTCGACCTATCTCACAATAGGTTTGGTTTGAATAAAATT
1 ATTAAAATTCCTA-ACTTAATCTAGGCTCGACCTATCTCACAACAAGTTTGATTT--A-AAAATT
* * * *
14702417 AAAATTCCTAAACTTAATTTAGGCTCAACCTATCTCACAACAGGTTTGATTTGAACAAAATTAAA
62 AAAATTCCTAGACTTAATCTAGGCTCGACCTATCTCACAACAGGTTCGATTT--A-AAAATTAAA
* * * * * *
14702482 ATTTCTAAACTTAATTTAGGCTCGACCTATCTCACAACAGGTTCAATTTA-AAA
124 ACTCCTAGACTTAATCTAGGCGCGACCTATCTCACAACAGGTTCGATTTACAAA
* * *
14702535 ATTAAAATTCCTAGACTTAATCTAGGCTCGACCTATCTTACAACAGGTTCGATTTAAAAATTAAA
1 ATTAAAATTCCTA-ACTTAATCTAGGCTCGACCTATCTCACAACAAGTTTGATTTAAAAATTAAA
* * *
14702600 ATTCCTAGACTTAATCTAGGCTCGACCTATCTCACAACAAGTTCGATTTAAAAATGAAAATTCCT
65 ATTCCTAGACTTAATCTAGGCTCGACCTATCTCACAACAGGTTCGATTTAAAAATTAAAACTCCT
* * * * *
14702665 ACACTTAATCTGGGCTCAACCTATCTCACAACAGGTTCTATTTA-AAA
130 AGACTTAATCTAGGCGCGACCTATCTCACAACAGGTTCGATTTACAAA
* * * *
14702712 A-TGAAATTCGTAGACTTAATCTAGGCTCGACCTATCTCACAACAGGTTCGATTTAAAAATTAAA
1 ATTAAAATTCCTA-ACTTAATCTAGGCTCGACCTATCTCACAACAAGTTTGATTTAAAAATTAAA
* *
14702776 ATTCCTAGACTTAATTTAGGCTTGACCTATCTCACAAACAGGTTCGATTTAAAAATTAAAACTCC
65 ATTCCTAGACTTAATCTAGGCTCGACCTATCTCAC-AACAGGTTCGATTTAAAAATTAAAACTCC
*
14702841 TAGACTTAATCTAGGCGCGACCTATTTCACAACAGGTTCGATTTAAACAAA
129 TAGACTTAATCTAGGCGCGACCTATCTCACAACAGGTTCGATTT--ACAAA
* *
14702892 ATTAAAATTCCTGAACTTAATTTAGACTCGACCTATCTCACAACAAGTTTGATTTAAAAATTAAA
1 ATTAAAATTCCT-AACTTAATCTAGGCTCGACCTATCTCACAACAAGTTTGATTTAAAAATTAAA
*
14702957 ATTCCTAGACTTAATCTAGGCTTGACCTATCTCACAAACAGGTTCGATTTAAAAATTAAAACTCC
65 ATTCCTAGACTTAATCTAGGCTCGACCTATCTCAC-AACAGGTTCGATTTAAAAATTAAAACTCC
*
14703022 TAGACTTAATCTAGGCGCGACCTATTTCACAACAGGTTCGATTTAAACAAA
129 TAGACTTAATCTAGGCGCGACCTATCTCACAACAGGTTCGATTT--ACAAA
* *
14703073 ATTAAAATTCCTGAACTTAATTTAGACTCGACCTATCTCACAACAAGTTTGATTTAAAAATTAAA
1 ATTAAAATTCCT-AACTTAATCTAGGCTCGACCTATCTCACAACAAGTTTGATTTAAAAATTAAA
*
14703138 ATTCCTAGACTTAATCTAGGCTTGACCTATCTCACAAACAGGTTCGATTTAAAAATTAAAACTCC
65 ATTCCTAGACTTAATCTAGGCTCGACCTATCTCAC-AACAGGTTCGATTTAAAAATTAAAACTCC
*
14703203 TAGACTTAATCTAGGCGCGACCTATTTCACAACAGGTTCGATTTAAACAAA
129 TAGACTTAATCTAGGCGCGACCTATCTCACAACAGGTTCGATTT--ACAAA
* * * * * * *
14703254 ATTGAAATTCCTAAACTTAATTTAGGCTCGACCTATCTCACAAC-AGGTTCAATTGAAAATTGAA
1 ATTAAAATTCCT-AACTTAATCTAGGCTCGACCTATCTCACAACAAGTTTGATTTAAAAATTAAA
* * * *
14703318 ATTCCTAAACTTAATCTAGACTCGACCTATCTCACAACAGGTTCGATTTAAAAATTAAAATTTCT
65 ATTCCTAGACTTAATCTAGGCTCGACCTATCTCACAACAGGTTCGATTTAAAAATTAAAACTCCT
* **
14703383 AGACTTAATCTAGGCTCGACCTATCTCACAAACAGGTTCGATTTTGAAA
130 AGACTTAATCTAGGCGCGACCTATCTCAC-AACAGGTTCGATTTACAAA
** * *
14703432 ATTAAAATTCCTAAACTCGATCTAGACTCAACCTATCT
1 ATTAAAATTCCT-AACTTAATCTAGGCTCGACCTATCT
14703470 TAAAATAGGT
Statistics
Matches: 866, Mismatches: 62, Indels: 19
0.91 0.07 0.02
Matches are distributed among these distances:
176 93 0.11
177 120 0.14
178 36 0.04
179 56 0.06
180 118 0.14
181 393 0.45
182 1 0.00
183 49 0.06
ACGTcount: A:0.37, C:0.21, G:0.11, T:0.31
Consensus pattern (177 bp):
ATTAAAATTCCTAACTTAATCTAGGCTCGACCTATCTCACAACAAGTTTGATTTAAAAATTAAAA
TTCCTAGACTTAATCTAGGCTCGACCTATCTCACAACAGGTTCGATTTAAAAATTAAAACTCCTA
GACTTAATCTAGGCGCGACCTATCTCACAACAGGTTCGATTTACAAA
Found at i:14719513 original size:26 final size:24
Alignment explanation
Indices: 14719457--14719517 Score: 68
Period size: 24 Copynumber: 2.5 Consensus size: 24
14719447 AGATTTAGGA
*
14719457 TTTTTTTTTTGGATTTTGATCTTG
1 TTTTTTTTTTGGATTTTGAACTTG
** *
14719481 TGATTTTTTTGGTTGTTTGAACTTGG
1 TTTTTTTTTTGGAT-TTTGAACTT-G
14719507 TTTTTTTTTTG
1 TTTTTTTTTTG
14719518 TTTGACCGAT
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
24 11 0.38
25 8 0.28
26 10 0.34
ACGTcount: A:0.08, C:0.03, G:0.20, T:0.69
Consensus pattern (24 bp):
TTTTTTTTTTGGATTTTGAACTTG
Found at i:14726920 original size:4 final size:4
Alignment explanation
Indices: 14726911--14726949 Score: 78
Period size: 4 Copynumber: 9.8 Consensus size: 4
14726901 CTAATGTTCA
14726911 TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT
14726950 AATAATAACG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 35 1.00
ACGTcount: A:0.26, C:0.00, G:0.23, T:0.51
Consensus pattern (4 bp):
TATG
Found at i:14733515 original size:21 final size:21
Alignment explanation
Indices: 14733471--14733516 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
14733461 TTCTTGAACA
* **
14733471 ATTATTGATGGAATTAGAGGC
1 ATTATTGACGGAATTAGAAAC
*
14733492 ATTATTGACGGAATTATAAAC
1 ATTATTGACGGAATTAGAAAC
14733513 ATTA
1 ATTA
14733517 CCAATAGAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.39, C:0.07, G:0.20, T:0.35
Consensus pattern (21 bp):
ATTATTGACGGAATTAGAAAC
Found at i:14737840 original size:30 final size:31
Alignment explanation
Indices: 14737787--14737845 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
14737777 ATTTTATCTA
* *
14737787 ATAAATTATAAAAATTATCTTTAATTGTGTG
1 ATAAAATATAAAAATTATCTTTAAATGTGTG
*
14737818 ATAAAATATAAAAA-TGTCTTTAAATGTG
1 ATAAAATATAAAAATTATCTTTAAATGTG
14737846 AACATATAAG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 12 0.48
31 13 0.52
ACGTcount: A:0.46, C:0.03, G:0.10, T:0.41
Consensus pattern (31 bp):
ATAAAATATAAAAATTATCTTTAAATGTGTG
Found at i:14738935 original size:35 final size:35
Alignment explanation
Indices: 14738896--14739078 Score: 242
Period size: 35 Copynumber: 5.2 Consensus size: 35
14738886 TTGATTGTTT
* *
14738896 AATTTAATCAATTAGGTCCAATAACTTAATTAAAC
1 AATTTAATCAATTAGGCCCAATGACTTAATTAAAC
* * *
14738931 AATTTAATTAATTAAGCCCAA-CACTTTAATTAAAC
1 AATTTAATCAATTAGGCCCAATGAC-TTAATTAAAC
*
14738966 AATTTTAATCAACTAGGCCCAATGACTTAATTAAAC
1 AA-TTTAATCAATTAGGCCCAATGACTTAATTAAAC
*
14739002 AAATTTAATCAATTAGGCCCAATGACTTAATTAAAT
1 -AATTTAATCAATTAGGCCCAATGACTTAATTAAAC
* * *
14739038 AATTTAATTAATTAGGCCCGATGATTTAATTAAAC
1 AATTTAATCAATTAGGCCCAATGACTTAATTAAAC
14739073 AATTTA
1 AATTTA
14739079 GTTAATTATG
Statistics
Matches: 130, Mismatches: 14, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
34 2 0.02
35 67 0.52
36 57 0.44
37 4 0.03
ACGTcount: A:0.44, C:0.15, G:0.07, T:0.34
Consensus pattern (35 bp):
AATTTAATCAATTAGGCCCAATGACTTAATTAAAC
Found at i:14738973 original size:71 final size:70
Alignment explanation
Indices: 14738896--14739086 Score: 249
Period size: 71 Copynumber: 2.7 Consensus size: 70
14738886 TTGATTGTTT
* *
14738896 AATTTAATCAATTAGGTCCAATAACTTAATTAAACAATTTAATTAATTAAGCCCAA-CACTTTAA
1 AATTTAATCAATTAGGCCCAATGACTTAATTAAACAATTTAATTAATTAAGCCCAATCAC-TTAA
14738960 TTAAAC
65 TTAAAC
* * * *
14738966 AATTTTAATCAACTAGGCCCAATGACTTAATTAAACAAATTTAATCAATTAGGCCCAATGACTTA
1 AA-TTTAATCAATTAGGCCCAATGACTTAATTAAAC-AATTTAATTAATTAAGCCCAATCACTTA
*
14739031 ATTAAAT
64 ATTAAAC
* * * *
14739038 AATTTAATTAATTAGGCCCGATGATTTAATTAAACAATTTAGTTAATTA
1 AATTTAATCAATTAGGCCCAATGACTTAATTAAACAATTTAATTAATTA
14739087 TGTCACGACC
Statistics
Matches: 105, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
70 14 0.13
71 59 0.56
72 30 0.29
73 2 0.02
ACGTcount: A:0.43, C:0.14, G:0.07, T:0.35
Consensus pattern (70 bp):
AATTTAATCAATTAGGCCCAATGACTTAATTAAACAATTTAATTAATTAAGCCCAATCACTTAAT
TAAAC
Found at i:14754210 original size:61 final size:61
Alignment explanation
Indices: 14754110--14754256 Score: 183
Period size: 61 Copynumber: 2.4 Consensus size: 61
14754100 CATGCAGGAT
*
14754110 AGAAAGTTTCTCGCTACAACGAGAATTCATTCTCACTGTAGCGATA-TT-CAGG-AGGCAAAAC
1 AGAAAGTTTCTCGCTGCAACGAGAATTCATTCTCACTGTAGC-A-AGTTGCAGGCA-GCAAAAC
* * * *
14754171 AGAATGTTTCTTGCTGCAACAAGAATTCATTCTCGCTGTAGCAAGTTGCAGGCAGCAAAAC
1 AGAAAGTTTCTCGCTGCAACGAGAATTCATTCTCACTGTAGCAAGTTGCAGGCAGCAAAAC
* *
14754232 AGAAGGTTTCTCACTGCAACGAGAA
1 AGAAAGTTTCTCGCTGCAACGAGAA
14754257 GCAGGGCACC
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
59 1 0.01
60 3 0.04
61 69 0.93
62 1 0.01
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.24
Consensus pattern (61 bp):
AGAAAGTTTCTCGCTGCAACGAGAATTCATTCTCACTGTAGCAAGTTGCAGGCAGCAAAAC
Found at i:14755277 original size:2 final size:2
Alignment explanation
Indices: 14755270--14755294 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
14755260 TATCATGAAA
14755270 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
14755295 GCACAGTTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:14759794 original size:5 final size:5
Alignment explanation
Indices: 14759784--14759809 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
14759774 ATTTTTTTAA
14759784 ATTTT ATTTT ATTTT ATTTT ATTTT A
1 ATTTT ATTTT ATTTT ATTTT ATTTT A
14759810 AATTACTTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (5 bp):
ATTTT
Found at i:14770823 original size:40 final size:40
Alignment explanation
Indices: 14770768--14770846 Score: 133
Period size: 40 Copynumber: 2.0 Consensus size: 40
14770758 TTGGCTATTT
*
14770768 TTCACCTTAGTGGGGTTTTCAACCTTGCCA-AGATTGGTGA
1 TTCACCTTAGTGGGGTTTTCAACCTCGCCACA-ATTGGTGA
14770808 TTCACCTTAGTGGGGTTTTCAACCTCGCCACAATTGGTG
1 TTCACCTTAGTGGGGTTTTCAACCTCGCCACAATTGGTG
14770847 TCTTTCATAA
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
40 36 0.97
41 1 0.03
ACGTcount: A:0.19, C:0.23, G:0.24, T:0.34
Consensus pattern (40 bp):
TTCACCTTAGTGGGGTTTTCAACCTCGCCACAATTGGTGA
Found at i:14778724 original size:17 final size:17
Alignment explanation
Indices: 14778694--14778746 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 17
14778684 AAATAATTAT
**
14778694 AAAAATAATTATAACAA
1 AAAAATAACAATAACAA
*
14778711 AAAAATAACAATAACATC
1 AAAAATAACAATAACA-A
*
14778729 AAATATAACAA-AACAA
1 AAAAATAACAATAACAA
14778745 AA
1 AA
14778747 TTTAAAATTA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
16 2 0.07
17 18 0.60
18 10 0.33
ACGTcount: A:0.72, C:0.11, G:0.00, T:0.17
Consensus pattern (17 bp):
AAAAATAACAATAACAA
Found at i:14779608 original size:28 final size:28
Alignment explanation
Indices: 14779575--14779630 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
14779565 ATTCGGAGTA
*
14779575 TAGGGGCAAAATC-ATAATTTTTTCACCC
1 TAGGGGC-AAATCGATAAATTTTTCACCC
*
14779603 TAGGGGCAAATCGGTAAATTTTTCACCC
1 TAGGGGCAAATCGATAAATTTTTCACCC
14779631 CATCACTTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 5 0.20
28 20 0.80
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.30
Consensus pattern (28 bp):
TAGGGGCAAATCGATAAATTTTTCACCC
Found at i:14786417 original size:20 final size:19
Alignment explanation
Indices: 14786394--14786447 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 19
14786384 TAAATATAAA
14786394 TAACATAAAACT-AACATTAT
1 TAACATAAAA-TAAACATT-T
*
14786414 TAACTTAAAATAAACATTT
1 TAACATAAAATAAACATTT
* *
14786433 AAACATAAATTAAAC
1 TAACATAAAATAAAC
14786448 TAAATTAATA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
19 14 0.48
20 15 0.52
ACGTcount: A:0.57, C:0.13, G:0.00, T:0.30
Consensus pattern (19 bp):
TAACATAAAATAAACATTT
Found at i:14786837 original size:2 final size:2
Alignment explanation
Indices: 14786830--14786869 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
14786820 CAACATAGAC
14786830 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14786870 TCCATCACTA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14789307 original size:78 final size:77
Alignment explanation
Indices: 14789178--14789342 Score: 269
Period size: 78 Copynumber: 2.1 Consensus size: 77
14789168 GATGTCATCT
*
14789178 ATTTTAATTTTGGGTGATTCATAAAAAATAGAAAATTGTTTCCTACTTTAAAAGCAAACTCCTAA
1 ATTTTAATTTTGGGTGATTCAAAAAAAATAGAAAATTGTTTCCTACTTTAAAAG-AAACTCCTAA
14789243 AATTAAGGATAGA
65 AATTAAGGATAGA
* *
14789256 ATTTTAATTTTGGGTGATT-AAAAAAGAATAGAAAATTGTTTCCTACTTTAAAAGATATTCCTAA
1 ATTTTAATTTTGGGTGATTCAAAAAA-AATAGAAAATTGTTTCCTACTTTAAAAGAAACTCCTAA
*
14789320 AATTAAGGATAGT
65 AATTAAGGATAGA
14789333 ATTTTAATTT
1 ATTTTAATTT
14789343 GGAAAATTCA
Statistics
Matches: 82, Mismatches: 4, Indels: 3
0.92 0.04 0.03
Matches are distributed among these distances:
77 35 0.43
78 47 0.57
ACGTcount: A:0.41, C:0.08, G:0.13, T:0.38
Consensus pattern (77 bp):
ATTTTAATTTTGGGTGATTCAAAAAAAATAGAAAATTGTTTCCTACTTTAAAAGAAACTCCTAAA
ATTAAGGATAGA
Found at i:14795110 original size:21 final size:21
Alignment explanation
Indices: 14795069--14795110 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
14795059 TTTTTGAAAT
* *
14795069 CTTAGATCTAAATTAAGATTG
1 CTTAGACCTAAATTAAAATTG
14795090 CTTAGACCTAAA-TAACAATTG
1 CTTAGACCTAAATTAA-AATTG
14795111 ATTATCATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 3 0.17
21 15 0.83
ACGTcount: A:0.40, C:0.14, G:0.12, T:0.33
Consensus pattern (21 bp):
CTTAGACCTAAATTAAAATTG
Found at i:14796245 original size:22 final size:22
Alignment explanation
Indices: 14796220--14796262 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
14796210 TGTTGAAACA
14796220 TGTA-ATAGGACACGCTAAGGCG
1 TGTAGATAGGACACGC-AAGGCG
* *
14796242 TGTAGTTAGGACATGCAAGGC
1 TGTAGATAGGACACGCAAGGC
14796263 ACGTACATGA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 9 0.50
23 9 0.50
ACGTcount: A:0.30, C:0.16, G:0.33, T:0.21
Consensus pattern (22 bp):
TGTAGATAGGACACGCAAGGCG
Found at i:14796566 original size:58 final size:58
Alignment explanation
Indices: 14796429--14796646 Score: 246
Period size: 58 Copynumber: 3.8 Consensus size: 58
14796419 TTCACATAAG
* * * * *
14796429 ACATACGAAGGTATGTATCAAGACATGCTAGGCATGTAGTTTGCAACA-AGGTAT--C-AA
1 ACATACTAAGGTATGTATCAAGACATGCAAGGCATGTA-ATT-C-ACATTGATATAACAAA
* * *
14796486 ACATACTAACGTATGTATCAAGACGTGCAAGGCATGTAATTCACTTTGATATAACAAA
1 ACATACTAAGGTATGTATCAAGACATGCAAGGCATGTAATTCACATTGATATAACAAA
* * * * *
14796544 ACATACCAAGGTATGCATCAAGACATGCAATGCATGTAATTCTCATTGATATAACAAG
1 ACATACTAAGGTATGTATCAAGACATGCAAGGCATGTAATTCACATTGATATAACAAA
* *
14796602 ACATGCTAAGGTATGTATCAAGACATGCAAGTCATGTAATTCACA
1 ACATACTAAGGTATGTATCAAGACATGCAAGGCATGTAATTCACA
14796647 ATCCAAACTT
Statistics
Matches: 135, Mismatches: 22, Indels: 7
0.82 0.13 0.04
Matches are distributed among these distances:
54 2 0.01
55 5 0.04
56 2 0.01
57 35 0.26
58 91 0.67
ACGTcount: A:0.39, C:0.17, G:0.18, T:0.26
Consensus pattern (58 bp):
ACATACTAAGGTATGTATCAAGACATGCAAGGCATGTAATTCACATTGATATAACAAA
Found at i:14805090 original size:21 final size:22
Alignment explanation
Indices: 14805062--14805110 Score: 82
Period size: 21 Copynumber: 2.3 Consensus size: 22
14805052 AAGACCTCTC
*
14805062 AGAGGAACTTAGCCTATCATTT
1 AGAGGAACTTAGCCTACCATTT
14805084 A-AGGAACTTAGCCTACCATTT
1 AGAGGAACTTAGCCTACCATTT
14805105 AGAGGA
1 AGAGGA
14805111 GTTATACCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 20 0.80
22 5 0.20
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (22 bp):
AGAGGAACTTAGCCTACCATTT
Found at i:14806331 original size:22 final size:22
Alignment explanation
Indices: 14806306--14806347 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
14806296 TTTTAAATAA
* *
14806306 TTTTATATTAAGTTTAATAATG
1 TTTTAAATAAAGTTTAATAATG
*
14806328 TTTTAAATAAATTTTAATAA
1 TTTTAAATAAAGTTTAATAA
14806348 ATTTTATTCT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (22 bp):
TTTTAAATAAAGTTTAATAATG
Found at i:14817484 original size:15 final size:16
Alignment explanation
Indices: 14817464--14817493 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
14817454 ATAGAATGGG
14817464 TTTGACTTT-TTGAAT
1 TTTGACTTTGTTGAAT
14817479 TTTGACTTTGTTGAA
1 TTTGACTTTGTTGAA
14817494 GAACATGTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.20, C:0.07, G:0.17, T:0.57
Consensus pattern (16 bp):
TTTGACTTTGTTGAAT
Found at i:14818097 original size:24 final size:26
Alignment explanation
Indices: 14818048--14818105 Score: 86
Period size: 25 Copynumber: 2.3 Consensus size: 26
14818038 ATATTATTGA
*
14818048 TAAATTA-TTTTTAGTAAGTTATTAT
1 TAAATTATTTTTTAGAAAGTTATTAT
14818073 TAAATTATTTTTTA-AAAGTTA-TAT
1 TAAATTATTTTTTAGAAAGTTATTAT
14818097 TAAATTATT
1 TAAATTATT
14818106 AATATTAGTA
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
24 12 0.39
25 13 0.42
26 6 0.19
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (26 bp):
TAAATTATTTTTTAGAAAGTTATTAT
Found at i:14818429 original size:36 final size:36
Alignment explanation
Indices: 14818389--14818459 Score: 108
Period size: 36 Copynumber: 2.0 Consensus size: 36
14818379 ATATATAATG
14818389 TATTAATGACTTGATGAGAT-AATGTTAATTTTTTTA
1 TATTAATGACTTGATGA-ATAAATGTTAATTTTTTTA
**
14818425 TATTAATGACTTGATGAATAAATGTTCCTTTTTTT
1 TATTAATGACTTGATGAATAAATGTTAATTTTTTT
14818460 TTTTGATAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
35 2 0.06
36 30 0.94
ACGTcount: A:0.31, C:0.06, G:0.13, T:0.51
Consensus pattern (36 bp):
TATTAATGACTTGATGAATAAATGTTAATTTTTTTA
Found at i:14832465 original size:25 final size:25
Alignment explanation
Indices: 14832430--14832489 Score: 84
Period size: 25 Copynumber: 2.4 Consensus size: 25
14832420 CCTCTGTGAT
* *
14832430 ATATACATGGCAAGGCCACGGGTTG
1 ATATACGTGGCAAGGCCACAGGTTG
*
14832455 ATATACGTGGCTAGGCCACAGGTTG
1 ATATACGTGGCAAGGCCACAGGTTG
*
14832480 ATATATGTGG
1 ATATACGTGG
14832490 TTGGGCCATG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.27, C:0.17, G:0.32, T:0.25
Consensus pattern (25 bp):
ATATACGTGGCAAGGCCACAGGTTG
Done.