Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19593398
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 1222752 characters in sequence are not A, C, G, or T
File 1 of 50
Found at i:103 original size:7 final size:7
Alignment explanation
Indices: 93--371 Score: 284
Period size: 7 Copynumber: 39.6 Consensus size: 7
83 AAAAAAAAAA
93 AAACCCT
1 AAACCCT
100 AAACCCT
1 AAACCCT
*
107 AAACTCT
1 AAACCCT
114 AAACCCT
1 AAACCCT
*
121 AACCCCT
1 AAACCCT
*
128 AACCCCT
1 AAACCCT
*
135 AACCCCT
1 AAACCCT
142 AAACCCT
1 AAACCCT
149 -AACCCTTT
1 AAACCC--T
*
157 AAACCCC
1 AAACCCT
164 AAACCCTT
1 AAACCC-T
172 AAACCCT
1 AAACCCT
*
179 AAACCTT
1 AAACCCT
*
186 AACCCCT
1 AAACCCT
*
193 AACCCCT
1 AAACCCT
*
200 -AACCCC
1 AAACCCT
206 AAACTCCT
1 AAAC-CCT
*
214 GAACCCT
1 AAACCCT
*
221 GAACCCT
1 AAACCCT
*
228 GAACCCT
1 AAACCCT
*
235 GAACCCT
1 AAACCCT
*
242 -ACCCCT
1 AAACCCT
248 AAACCCT
1 AAACCCT
255 AAACCCT
1 AAACCCT
262 AAA-CCT
1 AAACCCT
268 AAA-CCT
1 AAACCCT
274 AAACCCT
1 AAACCCT
281 AAACCCT
1 AAACCCT
288 AAACCCT
1 AAACCCT
295 AAACCCT
1 AAACCCT
302 AAACCC-
1 AAACCCT
308 AAACCCCT
1 AAA-CCCT
*
316 AACCCCT
1 AAACCCT
323 AAACCCT
1 AAACCCT
330 AAACCCT
1 AAACCCT
337 AACGAACCCCT
1 -A--AA-CCCT
348 -AACCCT
1 AAACCCT
*
354 TAACCCT
1 AAACCCT
361 AAACCCT
1 AAACCCT
368 AAAC
1 AAAC
372 TAAAAAACCA
Statistics
Matches: 239, Mismatches: 18, Indels: 30
0.83 0.06 0.10
Matches are distributed among these distances:
6 33 0.14
7 180 0.75
8 15 0.06
9 5 0.02
10 2 0.01
11 4 0.02
ACGTcount: A:0.38, C:0.45, G:0.02, T:0.15
Consensus pattern (7 bp):
AAACCCT
Found at i:10368 original size:6 final size:6
Alignment explanation
Indices: 10349--10392 Score: 52
Period size: 6 Copynumber: 7.0 Consensus size: 6
10339 AAAAATAAGT
**
10349 TGAAAA TCGAAAA TGAAAA TGAAAA AAAAAA TGAAAA TGGAAAA
1 TGAAAA T-GAAAA TGAAAA TGAAAA TGAAAA TGAAAA T-GAAAA
10393 GAGAAACAGA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
6 21 0.66
7 11 0.34
ACGTcount: A:0.68, C:0.02, G:0.16, T:0.14
Consensus pattern (6 bp):
TGAAAA
Found at i:11075 original size:14 final size:14
Alignment explanation
Indices: 11044--11104 Score: 52
Period size: 13 Copynumber: 4.1 Consensus size: 14
11034 AATTACAAGA
*
11044 ATAAATTTTT-TTT
1 ATAATTTTTTATTT
11057 ATAATTTTTTATTT
1 ATAATTTTTTATTT
* *
11071 TTAATTTATTTAATTAA
1 ATAATTT-TTT-ATT-T
11088 ATAAATTTTTTATTT
1 AT-AATTTTTTATTT
11103 AT
1 AT
11105 TCTAGGAAGG
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
13 9 0.24
14 9 0.24
15 5 0.13
16 6 0.16
17 4 0.11
18 5 0.13
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (14 bp):
ATAATTTTTTATTT
Found at i:12154 original size:34 final size:35
Alignment explanation
Indices: 12106--12239 Score: 150
Period size: 34 Copynumber: 3.9 Consensus size: 35
12096 ATAATTGTGA
* * *
12106 GAGAAATGAGGGGTTG-TGCTACCTGTTTGTGAGG
1 GAGAAAAGAAGGGTTGTTGCTACCAGTTTGTGAGG
* * *
12140 GAGAAAAGAAGGGTTGTTGTTGCCAGTTTGTGAGA
1 GAGAAAAGAAGGGTTGTTGCTACCAGTTTGTGAGG
12175 GAGAAAAG-AGGGATTG-TGCTACC-GATTTGTGAGG
1 GAGAAAAGAAGGG-TTGTTGCTACCAG-TTTGTGAGG
* *
12209 GAGAAAGGAAGGGTTGTTGCTGCCAGTTTGT
1 GAGAAAAGAAGGGTTGTTGCTACCAGTTTGT
12240 AAGAGAGCTG
Statistics
Matches: 83, Mismatches: 11, Indels: 11
0.79 0.10 0.10
Matches are distributed among these distances:
33 1 0.01
34 41 0.49
35 40 0.48
36 1 0.01
ACGTcount: A:0.25, C:0.08, G:0.39, T:0.28
Consensus pattern (35 bp):
GAGAAAAGAAGGGTTGTTGCTACCAGTTTGTGAGG
Found at i:12179 original size:35 final size:34
Alignment explanation
Indices: 12104--12246 Score: 146
Period size: 35 Copynumber: 4.1 Consensus size: 34
12094 CAATAATTGT
* * *
12104 GAGAGAAATGAGGGGTTGTGCTACCTGTTTGTGA
1 GAGAGAAAAGAAGGGTTGTGCTACCAGTTTGTGA
* * *
12138 GGGAGAAAAGAAGGGTTGTTGTTGCCAGTTTGTGA
1 GAGAGAAAAGAAGGGTTG-TGCTACCAGTTTGTGA
12173 GAGAGAAAAG-AGGGATTGTGCTACC-GATTTGTGA
1 GAGAGAAAAGAAGGG-TTGTGCTACCAG-TTTGTGA
* * * *
12207 GGGAGAAAGGAAGGGTTGTTGCTGCCAGTTTGTAA
1 GAGAGAAAAGAAGGGTTG-TGCTACCAGTTTGTGA
12242 GAGAG
1 GAGAG
12247 CTGTGCCGTC
Statistics
Matches: 89, Mismatches: 14, Indels: 11
0.78 0.12 0.10
Matches are distributed among these distances:
33 1 0.01
34 42 0.47
35 45 0.51
36 1 0.01
ACGTcount: A:0.27, C:0.08, G:0.39, T:0.26
Consensus pattern (34 bp):
GAGAGAAAAGAAGGGTTGTGCTACCAGTTTGTGA
Found at i:12209 original size:69 final size:69
Alignment explanation
Indices: 12104--12246 Score: 225
Period size: 69 Copynumber: 2.1 Consensus size: 69
12094 CAATAATTGT
* * *
12104 GAGAGAAATGAGGGGTTGTGCTACCTGTTTGTGAGGGAGAAAAGAAGGGTTGTTGTTGCCAGTTT
1 GAGAGAAAAGAGGGATTGTGCTACCTGTTTGTGAGGGAGAAAAGAAGGGTTGTTGCTGCCAGTTT
*
12169 GTGA
66 GTAA
*
12173 GAGAGAAAAGAGGGATTGTGCTACC-GATTTGTGAGGGAGAAAGGAAGGGTTGTTGCTGCCAGTT
1 GAGAGAAAAGAGGGATTGTGCTACCTG-TTTGTGAGGGAGAAAAGAAGGGTTGTTGCTGCCAGTT
12237 TGTAA
65 TGTAA
12242 GAGAG
1 GAGAG
12247 CTGTGCCGTC
Statistics
Matches: 68, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
68 1 0.01
69 67 0.99
ACGTcount: A:0.27, C:0.08, G:0.39, T:0.26
Consensus pattern (69 bp):
GAGAGAAAAGAGGGATTGTGCTACCTGTTTGTGAGGGAGAAAAGAAGGGTTGTTGCTGCCAGTTT
GTAA
Found at i:12369 original size:18 final size:17
Alignment explanation
Indices: 12352--12395 Score: 56
Period size: 15 Copynumber: 2.7 Consensus size: 17
12342 GAGAAGGAGA
12352 AAAAGAAAGAAAAAGAG
1 AAAAGAAAGAAAAAGAG
* *
12369 AGAA-ATA-AAAAAGAG
1 AAAAGAAAGAAAAAGAG
12384 AAAAGAAAGAAA
1 AAAAGAAAGAAA
12396 GGAAAGAAAG
Statistics
Matches: 21, Mismatches: 4, Indels: 4
0.72 0.14 0.14
Matches are distributed among these distances:
15 11 0.52
16 4 0.19
17 6 0.29
ACGTcount: A:0.77, C:0.00, G:0.20, T:0.02
Consensus pattern (17 bp):
AAAAGAAAGAAAAAGAG
Found at i:12383 original size:13 final size:13
Alignment explanation
Indices: 12340--12404 Score: 62
Period size: 14 Copynumber: 4.9 Consensus size: 13
12330 AGAGTGAAGG
* *
12340 AAGAGAAGGAGAA
1 AAGAGAAAGAAAA
12353 AA-AGAAAGAAAA
1 AAGAGAAAGAAAA
*
12365 AGAGAGAAATAAAA
1 A-AGAGAAAGAAAA
12379 AAGAGAAAAGAAAGA
1 AAGAG-AAAGAAA-A
12394 AAG-GAAAGAAA
1 AAGAGAAAGAAA
12405 GGAGAAAAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
12 9 0.20
13 14 0.32
14 17 0.39
15 4 0.09
ACGTcount: A:0.72, C:0.00, G:0.26, T:0.02
Consensus pattern (13 bp):
AAGAGAAAGAAAA
Found at i:12419 original size:7 final size:7
Alignment explanation
Indices: 12409--12449 Score: 55
Period size: 7 Copynumber: 5.7 Consensus size: 7
12399 AAGAAAGGAG
12409 AAAAAAT
1 AAAAAAT
*
12416 AAAAAAA
1 AAAAAAT
12423 AATAAAAT
1 AA-AAAAT
*
12431 AAATAAT
1 AAAAAAT
12438 AAAAAAT
1 AAAAAAT
12445 AAAAA
1 AAAAA
12450 TAATATATCA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
7 23 0.79
8 6 0.21
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (7 bp):
AAAAAAT
Found at i:12436 original size:19 final size:19
Alignment explanation
Indices: 12412--12448 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
12402 AAAGGAGAAA
12412 AAATAAAAAAAAATAAAAT
1 AAATAAAAAAAAATAAAAT
*
12431 AAATAATAAAAAATAAAA
1 AAATAAAAAAAAATAAAA
12449 ATAATATATC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (19 bp):
AAATAAAAAAAAATAAAAT
Found at i:12454 original size:19 final size:18
Alignment explanation
Indices: 12409--12454 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 18
12399 AAGAAAGGAG
12409 AAAA-AATAAAAAAAAAT
1 AAAATAATAAAAAAAAAT
*
12426 AAAATAAATAATAAAAAAT
1 AAAAT-AATAAAAAAAAAT
12445 AAAAATAATA
1 -AAAATAATA
12455 TATCAAGTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
17 4 0.16
19 16 0.64
20 5 0.20
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (18 bp):
AAAATAATAAAAAAAAAT
Found at i:14727 original size:15 final size:15
Alignment explanation
Indices: 14702--14737 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
14692 CCTATAATTG
14702 AGAACAAAAAAAGGAAA
1 AGAA-AAAAAAA-GAAA
14719 AGAAAAAAAAAGAAA
1 AGAAAAAAAAAGAAA
14734 AGAA
1 AGAA
14738 GGATGTCGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 8 0.42
16 7 0.37
17 4 0.21
ACGTcount: A:0.81, C:0.03, G:0.17, T:0.00
Consensus pattern (15 bp):
AGAAAAAAAAAGAAA
Found at i:35476 original size:15 final size:15
Alignment explanation
Indices: 35456--35485 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
35446 CTTTTTCTGG
35456 TCTCTTCCCTCTATT
1 TCTCTTCCCTCTATT
*
35471 TCTCTTCTCTCTATT
1 TCTCTTCCCTCTATT
35486 CCGCTTGTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.07, C:0.37, G:0.00, T:0.57
Consensus pattern (15 bp):
TCTCTTCCCTCTATT
Found at i:42108 original size:2 final size:2
Alignment explanation
Indices: 42101--42139 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
42091 TAAGTAAATG
42101 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
42140 AAGTTAATTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:43144 original size:31 final size:31
Alignment explanation
Indices: 43106--43168 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
43096 AAAAATTTAT
43106 ATATATGGATATATTATTTACATGAAATGTC
1 ATATATGGATATATTATTTACATGAAATGTC
43137 ATATATGGATATATTATTTACATGAAATGTC
1 ATATATGGATATATTATTTACATGAAATGTC
43168 A
1 A
43169 CTACTTATTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.40, C:0.06, G:0.13, T:0.41
Consensus pattern (31 bp):
ATATATGGATATATTATTTACATGAAATGTC
Found at i:73680 original size:19 final size:19
Alignment explanation
Indices: 73656--73700 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
73646 TATGCAAGGA
*
73656 CTGTGTGGTGAACAAAAAG
1 CTGTGTCGTGAACAAAAAG
*
73675 CTGTGTCTTGAACAAAAAG
1 CTGTGTCGTGAACAAAAAG
73694 CTGTGTC
1 CTGTGTC
73701 TTACCATGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.27
Consensus pattern (19 bp):
CTGTGTCGTGAACAAAAAG
Found at i:73701 original size:19 final size:19
Alignment explanation
Indices: 73664--73702 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
73654 GACTGTGTGG
73664 TGAACAAAAAGCTGTGTCT
1 TGAACAAAAAGCTGTGTCT
73683 TGAACAAAAAGCTGTGTCT
1 TGAACAAAAAGCTGTGTCT
73702 T
1 T
73703 ACCATGGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.36, C:0.15, G:0.21, T:0.28
Consensus pattern (19 bp):
TGAACAAAAAGCTGTGTCT
Found at i:75114 original size:4 final size:4
Alignment explanation
Indices: 75107--75255 Score: 155
Period size: 4 Copynumber: 35.5 Consensus size: 4
75097 AAATAATAAT
75107 AATA AATA AATTA AATA AATA AA-A TAAT- AATA AATA AATTA AAT- AATA
1 AATA AATA AA-TA AATA AATA AATA -AATA AATA AATA AA-TA AATA AATA
75155 AATA AATTA AATA AATA AAT- AAT- AATA AATA AATTA AATTA AATAA
1 AATA AA-TA AATA AATA AATA AATA AATA AATA AA-TA AA-TA AAT-A
75201 AATA AATA AATAA AATA AATAA AATA AATAA AATAA AATA AATAA AATA
1 AATA AATA AAT-A AATA AAT-A AATA AAT-A AAT-A AATA AAT-A AATA
75250 AATA AA
1 AATA AA
75256 AATAATAATA
Statistics
Matches: 131, Mismatches: 0, Indels: 28
0.82 0.00 0.18
Matches are distributed among these distances:
3 13 0.10
4 72 0.55
5 46 0.35
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (4 bp):
AATA
Found at i:75256 original size:9 final size:9
Alignment explanation
Indices: 75085--75256 Score: 166
Period size: 9 Copynumber: 19.7 Consensus size: 9
75075 CTGTAGACAC
*
75085 ATAAATTAA
1 ATAAAATAA
*
75094 AAAAAAT-A
1 ATAAAATAA
75102 ATAATAATAA
1 ATAA-AATAA
*
75112 ATAAATTAA
1 ATAAAATAA
75121 AT-AAATAAA
1 ATAAAAT-AA
75130 ATAATAATAA
1 ATAA-AATAA
*
75140 ATAAATTAA
1 ATAAAATAA
75149 AT--AATAA
1 ATAAAATAA
*
75156 ATAAATTAA
1 ATAAAATAA
75165 AT-AAATAA
1 ATAAAATAA
75173 ATAATAATAA
1 ATAA-AATAA
*
75183 ATAAATTAA
1 ATAAAATAA
*
75192 ATTAAATAA
1 ATAAAATAA
75201 A-ATAAATAA
1 ATA-AAATAA
75210 ATAAAATAA
1 ATAAAATAA
75219 ATAAAATAA
1 ATAAAATAA
75228 AT---A-AA
1 ATAAAATAA
75233 ATAAAATAA
1 ATAAAATAA
75242 ATAAAATAA
1 ATAAAATAA
75251 ATAAAA
1 ATAAAA
75257 ATAATAATAA
Statistics
Matches: 135, Mismatches: 13, Indels: 30
0.76 0.07 0.17
Matches are distributed among these distances:
5 4 0.03
6 1 0.01
7 6 0.04
8 15 0.11
9 84 0.62
10 22 0.16
11 3 0.02
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (9 bp):
ATAAAATAA
Found at i:75263 original size:32 final size:33
Alignment explanation
Indices: 75091--75256 Score: 158
Period size: 31 Copynumber: 5.3 Consensus size: 33
75081 ACACATAAAT
* * *
75091 TAAAAAAAAT-AATAATAATAAAT-AAATTAAA
1 TAAATAAAATAAATAAAAATAAATAAAATAAAA
*
75122 TAAATAAAAT-AATAATAAATAAATTAAAT--AA
1 TAAATAAAATAAATAA-AAATAAATAAAATAAAA
*
75153 TAAATAAATTAAAT--AAATAAATAATAAT-AAA
1 TAAATAAAATAAATAAAAATAAATAA-AATAAAA
*
75184 TAAATTAAATTAAAT-AAAATAAAT-AAATAAAA
1 TAAA-TAAAATAAATAAAAATAAATAAAATAAAA
75216 TAAATAAAATAAAT-AAAATAAA-ATAAATAAAA
1 TAAATAAAATAAATAAAAATAAATA-AAATAAAA
75248 TAAATAAAA
1 TAAATAAAA
75257 ATAATAATAA
Statistics
Matches: 120, Mismatches: 5, Indels: 19
0.83 0.03 0.13
Matches are distributed among these distances:
29 9 0.08
30 3 0.03
31 51 0.43
32 45 0.38
33 12 0.10
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (33 bp):
TAAATAAAATAAATAAAAATAAATAAAATAAAA
Found at i:76129 original size:15 final size:14
Alignment explanation
Indices: 76104--76138 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
76094 AGCTTGCAAA
76104 AAATAAAATAAATAAT
1 AAAT-AAATAAAT-AT
76120 AAATAAATAAATAT
1 AAATAAATAAATAT
76134 AAATA
1 AAATA
76139 TACATATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 7 0.37
15 8 0.42
16 4 0.21
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (14 bp):
AAATAAATAAATAT
Found at i:76210 original size:25 final size:26
Alignment explanation
Indices: 76173--76255 Score: 73
Period size: 25 Copynumber: 3.1 Consensus size: 26
76163 TTTGGATAAA
* *
76173 AAAATTAATTAAATAAA-AAATATAT
1 AAAATAAAATAAATAAATAAATATAT
76198 AAAATAAAATAAA-AAATAATGATAGTAAT
1 AAAATAAAATAAATAAATAA--ATA-T-AT
76227 AAAATGAAAA-AAATAAATAAATAATAT
1 AAAAT-AAAATAAATAAATAAAT-ATAT
76254 AA
1 AA
76256 TTGGAATAAA
Statistics
Matches: 48, Mismatches: 2, Indels: 14
0.75 0.03 0.22
Matches are distributed among these distances:
24 3 0.06
25 13 0.27
27 7 0.15
28 4 0.08
29 11 0.23
30 10 0.21
ACGTcount: A:0.71, C:0.00, G:0.04, T:0.25
Consensus pattern (26 bp):
AAAATAAAATAAATAAATAAATATAT
Found at i:95977 original size:13 final size:12
Alignment explanation
Indices: 95940--95992 Score: 54
Period size: 13 Copynumber: 4.2 Consensus size: 12
95930 TTTCACATTC
*
95940 TTTCTTTGCTTT
1 TTTCTTTTCTTT
*
95952 TTTAGTTTT-TTT
1 TTT-CTTTTCTTT
95964 TTTCTTTTGCTTT
1 TTTCTTTT-CTTT
95977 TTTCTTCTTCTTT
1 TTTCTT-TTCTTT
95990 TTT
1 TTT
95993 AAATTTCATC
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
11 4 0.12
12 9 0.26
13 19 0.56
14 2 0.06
ACGTcount: A:0.02, C:0.13, G:0.06, T:0.79
Consensus pattern (12 bp):
TTTCTTTTCTTT
Found at i:95990 original size:25 final size:24
Alignment explanation
Indices: 95940--95991 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 24
95930 TTTCACATTC
* *
95940 TTTCTTTGCTTTTTTAGTTTTTTT
1 TTTCTTTGCTTTTTTACTTTTCTT
95964 TTTCTTTTGCTTTTTT-CTTCTTCTT
1 TTTC-TTTGCTTTTTTACTT-TTCTT
95989 TTT
1 TTT
95992 TAAATTTCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 6 0.25
25 18 0.75
ACGTcount: A:0.02, C:0.13, G:0.06, T:0.79
Consensus pattern (24 bp):
TTTCTTTGCTTTTTTACTTTTCTT
Found at i:97974 original size:2 final size:2
Alignment explanation
Indices: 97969--98049 Score: 114
Period size: 2 Copynumber: 42.0 Consensus size: 2
97959 TTTTCCCTTT
** *
97969 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA NC TT
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
98010 TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
98050 CACATACAAT
Statistics
Matches: 71, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
1 3 0.04
2 68 0.96
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:136083 original size:19 final size:18
Alignment explanation
Indices: 136040--136083 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 18
136030 ATATTTCGTG
136040 AAAAAA-TTTTTTTAAAA
1 AAAAAATTTTTTTTAAAA
136057 AAAGAAATTTTTTTTAAAA
1 AAA-AAATTTTTTTTAAAA
136076 AATAAAAT
1 AA-AAAAT
136084 CTAAAAAAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
17 3 0.12
18 3 0.12
19 17 0.71
20 1 0.04
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (18 bp):
AAAAAATTTTTTTTAAAA
Found at i:136363 original size:17 final size:17
Alignment explanation
Indices: 136341--136378 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
136331 GTATTATTTC
136341 TTCTTTCTC-TTTCTATT
1 TTCTTTCTCATTT-TATT
*
136358 TTCTTTTTCATTTTATT
1 TTCTTTCTCATTTTATT
136375 TTCT
1 TTCT
136379 ATCGTTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 16 0.84
18 3 0.16
ACGTcount: A:0.08, C:0.18, G:0.00, T:0.74
Consensus pattern (17 bp):
TTCTTTCTCATTTTATT
Found at i:136387 original size:113 final size:113
Alignment explanation
Indices: 136269--136521 Score: 341
Period size: 113 Copynumber: 2.2 Consensus size: 113
136259 ATTCTAGGTT
* *
136269 TTTTTTTTTGTT-CTTATAAAAATTAAGAAAAAAGAAGATCTAAAATTCAAAAGTGTATTCAAGT
1 TTTTTTTTTGTTACTT-TAAAAACT--CAAAAAAGAAGATCTAAAATTCAAAAGTGTATTCAAGT
136333 ATTATTTCTTCTTTCTCTTTCTATTTTCTTTTTCATTTTATTTTCTA-TCG
63 ATTATTTCTTCTTTCTCTTTCTATTTTCTTTTTCATTTTATTTTCTATTCG
* * ***** **
136383 TTTTTTTTTTTTAACTTTGAAAACTCTTTTTATNAGATCTAAAATTCAAAAGTGTATTCAAGTAT
1 TTTTTTTTTGTT-ACTTTAAAAACTCAAAAAAGAAGATCTAAAATTCAAAAGTGTATTCAAGTAT
136448 TATTTCTTCTTTCTCTTTCTATTTTCTTTTTCATTTTATTTTCTATTCG
65 TATTTCTTCTTTCTCTTTCTATTTTCTTTTTCATTTTATTTTCTATTCG
136497 TTTTTTTTT-TTACTTTGAAAAACTC
1 TTTTTTTTTGTTACTTT-AAAAACTC
136522 TCTTTATTAG
Statistics
Matches: 123, Mismatches: 12, Indels: 9
0.85 0.08 0.06
Matches are distributed among these distances:
112 5 0.04
113 86 0.70
114 23 0.19
115 6 0.05
116 3 0.02
ACGTcount: A:0.26, C:0.12, G:0.06, T:0.55
Consensus pattern (113 bp):
TTTTTTTTTGTTACTTTAAAAACTCAAAAAAGAAGATCTAAAATTCAAAAGTGTATTCAAGTATT
ATTTCTTCTTTCTCTTTCTATTTTCTTTTTCATTTTATTTTCTATTCG
Found at i:136476 original size:17 final size:17
Alignment explanation
Indices: 136454--136491 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
136444 GTATTATTTC
136454 TTCTTTCTC-TTTCTATT
1 TTCTTTCTCATTT-TATT
*
136471 TTCTTTTTCATTTTATT
1 TTCTTTCTCATTTTATT
136488 TTCT
1 TTCT
136492 ATTCGTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 16 0.84
18 3 0.16
ACGTcount: A:0.08, C:0.18, G:0.00, T:0.74
Consensus pattern (17 bp):
TTCTTTCTCATTTTATT
Found at i:136522 original size:113 final size:112
Alignment explanation
Indices: 136304--136528 Score: 400
Period size: 113 Copynumber: 2.0 Consensus size: 112
136294 AGAAAAAAGA
136304 AGATCTAAAATTCAAAAGTGTATTCAAGTATTATTTCTTCTTTCTCTTTCTATTTTCTTTTTCAT
1 AGATCTAAAATTCAAAAGTGTATTCAAGTATTATTTCTTCTTTCTCTTTCTATTTTCTTTTTCAT
*
136369 TTTATTTTCTATCGTTTTTTTTTTTTAACTTTGAAAACTCTTTTTAT
66 TTTATTTTCTATCGTTTTTTTTTTTTAACTTTGAAAACTCTCTTTAT
136416 NAGATCTAAAATTCAAAAGTGTATTCAAGTATTATTTCTTCTTTCTCTTTCTATTTTCTTTTTCA
1 -AGATCTAAAATTCAAAAGTGTATTCAAGTATTATTTCTTCTTTCTCTTTCTATTTTCTTTTTCA
136481 TTTTATTTTCTATTCG-TTTTTTTTTTT-ACTTTGAAAAACTCTCTTTAT
65 TTTTATTTTCTA-TCGTTTTTTTTTTTTAACTTTG-AAAACTCTCTTTAT
136529 TAGTTGATAT
Statistics
Matches: 109, Mismatches: 1, Indels: 4
0.96 0.01 0.04
Matches are distributed among these distances:
112 6 0.06
113 100 0.92
114 3 0.03
ACGTcount: A:0.23, C:0.14, G:0.05, T:0.57
Consensus pattern (112 bp):
AGATCTAAAATTCAAAAGTGTATTCAAGTATTATTTCTTCTTTCTCTTTCTATTTTCTTTTTCAT
TTTATTTTCTATCGTTTTTTTTTTTTAACTTTGAAAACTCTCTTTAT
Found at i:155325 original size:13 final size:12
Alignment explanation
Indices: 155307--155350 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 12
155297 AAAAAGCAGC
155307 TTTCTTTCTTTCT
1 TTTCTTTCTTT-T
155320 TTTCTTTTCTTTT
1 TTTC-TTTCTTTT
*
155333 CTTCTTTCCTTTT
1 TTTCTTT-CTTTT
155346 TTTCT
1 TTTCT
155351 ATAAATAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
12 3 0.11
13 17 0.63
14 7 0.26
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (12 bp):
TTTCTTTCTTTT
Found at i:155330 original size:18 final size:19
Alignment explanation
Indices: 155307--155350 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 19
155297 AAAAAGCAGC
*
155307 TTTCTTTCT-TTCTTTTCT
1 TTTCTTTCTCTTCTTTCCT
155325 TTTCTTT-TCTTCTTTCCT
1 TTTCTTTCTCTTCTTTCCT
155343 TTT-TTTCT
1 TTTCTTTCT
155351 ATAAATAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
17 4 0.17
18 19 0.83
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (19 bp):
TTTCTTTCTCTTCTTTCCT
Found at i:162764 original size:6 final size:6
Alignment explanation
Indices: 162729--162761 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
162719 TTGGGTGACC
*
162729 CAGAGG CAGAGG CAGAGG CAGAGG CAGGGG CAG
1 CAGAGG CAGAGG CAGAGG CAGAGG CAGAGG CAG
162762 GGGAAAACAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.30, C:0.18, G:0.52, T:0.00
Consensus pattern (6 bp):
CAGAGG
Found at i:170411 original size:3 final size:3
Alignment explanation
Indices: 170403--170427 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
170393 TGATCTGCTT
170403 TGA TGA TGA TGA TGA TGA TGA TGA T
1 TGA TGA TGA TGA TGA TGA TGA TGA T
170428 ATGCTTAGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.32, T:0.36
Consensus pattern (3 bp):
TGA
Found at i:173109 original size:3 final size:3
Alignment explanation
Indices: 173101--173136 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
173091 TTCAGGAATA
*
173101 ATT ATT ATT ATT ATT GTT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
173137 TGTGTTAAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:183804 original size:51 final size:51
Alignment explanation
Indices: 183744--183848 Score: 147
Period size: 51 Copynumber: 2.1 Consensus size: 51
183734 TTTTGTGTAA
* * *
183744 TTTGAAGTAATTTTTAATGCATGAAGAAAAACCTTTGAGCGTTTTAAACAT
1 TTTGAAGTAATTTTTAATACATGAAGAAAAACCTTTGAACATTTTAAACAT
* * * *
183795 TTTGGAGTAATTTTTGATATATGAAGAAAAACTTTTGAACATTTTAAACAT
1 TTTGAAGTAATTTTTAATACATGAAGAAAAACCTTTGAACATTTTAAACAT
183846 TTT
1 TTT
183849 TTGTCAAGTA
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
51 47 1.00
ACGTcount: A:0.37, C:0.08, G:0.14, T:0.41
Consensus pattern (51 bp):
TTTGAAGTAATTTTTAATACATGAAGAAAAACCTTTGAACATTTTAAACAT
Found at i:184090 original size:22 final size:22
Alignment explanation
Indices: 183970--184091 Score: 66
Period size: 22 Copynumber: 5.6 Consensus size: 22
183960 TACATAATCG
* *
183970 ATTTTTGGGTATTTTGTGACTA
1 ATTTTTAGGTATTATGTGACTA
* ** * *
183992 GTTTTTAAATATTACGTTACTA
1 ATTTTTAGGTATTATGTGACTA
* * * *
184014 ATTTTTACGTATTGTATGACTG
1 ATTTTTAGGTATTATGTGACTA
* * *
184036 A-CTTTGGGCATTATGTGACTA
1 ATTTTTAGGTATTATGTGACTA
* * * * *
184057 GTCTTAAAGTATTACGTGACTA
1 ATTTTTAGGTATTATGTGACTA
184079 ATTTTTAGGTATT
1 ATTTTTAGGTATT
184092 GTGTAATTGG
Statistics
Matches: 67, Mismatches: 32, Indels: 2
0.66 0.32 0.02
Matches are distributed among these distances:
21 13 0.19
22 54 0.81
ACGTcount: A:0.25, C:0.09, G:0.18, T:0.48
Consensus pattern (22 bp):
ATTTTTAGGTATTATGTGACTA
Found at i:184165 original size:23 final size:22
Alignment explanation
Indices: 184109--184167 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 22
184099 TGGTTGATAT
*
184109 GGCATTGCATGACTAGTTAATA
1 GGCATTGCGTGACTAGTTAATA
*
184131 GGCATTGCGTGACTAGTTAGTAA
1 GGCATTGCGTGACTAGTTAAT-A
* *
184154 GGTATTGTGTGACT
1 GGCATTGCGTGACT
184168 TAGTCATTGC
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
22 19 0.59
23 13 0.41
ACGTcount: A:0.25, C:0.12, G:0.29, T:0.34
Consensus pattern (22 bp):
GGCATTGCGTGACTAGTTAATA
Found at i:184228 original size:44 final size:44
Alignment explanation
Indices: 184177--184285 Score: 164
Period size: 44 Copynumber: 2.5 Consensus size: 44
184167 TTAGTCATTG
*
184177 CCTAAAAATCAATCACACAATGCCTAAAAATCAGTCACATAATA
1 CCTAAAAATCAATCACACAATACCTAAAAATCAGTCACATAATA
* *
184221 CCTAAAAATCAGTCACACAATACTTAAAAATCAGTCACATAATA
1 CCTAAAAATCAATCACACAATACCTAAAAATCAGTCACATAATA
* * *
184265 CTTAAAAACCAATCACGCAAT
1 CCTAAAAATCAATCACACAAT
184286 TATTAAGTCA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 58 1.00
ACGTcount: A:0.50, C:0.25, G:0.05, T:0.21
Consensus pattern (44 bp):
CCTAAAAATCAATCACACAATACCTAAAAATCAGTCACATAATA
Found at i:184279 original size:26 final size:22
Alignment explanation
Indices: 184179--184332 Score: 142
Period size: 22 Copynumber: 7.3 Consensus size: 22
184169 AGTCATTGCC
* * * *
184179 TAAAAATCAATCACACAATGCC
1 TAAAAATCAGTCACATAATACT
*
184201 TAAAAATCAGTCACATAATACC
1 TAAAAATCAGTCACATAATACT
*
184223 TAAAAATCAGTCACACAATACT
1 TAAAAATCAGTCACATAATACT
184245 TAAAAATCAGTCACATAATACT
1 TAAAAATCAGTCACATAATACT
* * **
184267 TAAAAACCAATCACGCAATTA-T
1 TAAAAATCAGTCACATAA-TACT
*
184289 T----A--AGTCACATAATGCT
1 TAAAAATCAGTCACATAATACT
*
184305 TAAAAATCAGTCTCATAATACT
1 TAAAAATCAGTCACATAATACT
184327 TAAAAA
1 TAAAAA
184333 CTAGTGATAC
Statistics
Matches: 108, Mismatches: 16, Indels: 16
0.77 0.11 0.11
Matches are distributed among these distances:
15 1 0.01
16 9 0.08
18 1 0.01
20 1 0.01
22 94 0.87
23 2 0.02
ACGTcount: A:0.49, C:0.21, G:0.05, T:0.25
Consensus pattern (22 bp):
TAAAAATCAGTCACATAATACT
Found at i:185459 original size:3 final size:3
Alignment explanation
Indices: 185446--185481 Score: 54
Period size: 3 Copynumber: 11.7 Consensus size: 3
185436 ATTAATCACA
*
185446 AAT ATAT AAT AAT AAT AAT AAT AAT AAT AAC AAT AA
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
185482 CGCATGCTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 27 0.90
4 3 0.10
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:188860 original size:32 final size:31
Alignment explanation
Indices: 188810--188893 Score: 107
Period size: 32 Copynumber: 2.7 Consensus size: 31
188800 CATGTGGTAA
**
188810 TATCAGGAA-TTTGCTTCAGAAGAATTTAAT
1 TATCAGGAATTTTGCTTCAGAAGAATCAAAT
* *
188840 TATCATGAAGTTTTGTTTCAGAAGAATCAAAT
1 TATCAGGAA-TTTTGCTTCAGAAGAATCAAAT
*
188872 TATCAGGAATTTTCCTTCAGAA
1 TATCAGGAATTTTGCTTCAGAA
188894 AATATAAGTA
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
30 8 0.18
31 11 0.24
32 26 0.58
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.37
Consensus pattern (31 bp):
TATCAGGAATTTTGCTTCAGAAGAATCAAAT
Found at i:192168 original size:15 final size:14
Alignment explanation
Indices: 192140--192173 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
192130 TGTTTTTTGT
*
192140 TTTCTTCTTTTCTC
1 TTTCTCCTTTTCTC
192154 TTTCTCCTTTCTCTC
1 TTTCTCCTTT-TCTC
192169 TTTCT
1 TTTCT
192174 TTTCTTGAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (14 bp):
TTTCTCCTTTTCTC
Found at i:195715 original size:14 final size:14
Alignment explanation
Indices: 195696--195723 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
195686 AAGTAAATGC
195696 CAGCTATCTTGTGA
1 CAGCTATCTTGTGA
195710 CAGCTATCTTGTGA
1 CAGCTATCTTGTGA
195724 AGTTTTCTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.36
Consensus pattern (14 bp):
CAGCTATCTTGTGA
Found at i:208285 original size:3 final size:3
Alignment explanation
Indices: 208277--208312 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
208267 AGTAACTAGA
208277 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA- AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
208313 CAACACAAGT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 30 0.94
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:212325 original size:3 final size:3
Alignment explanation
Indices: 212319--212345 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
212309 GATGACAATG
212319 ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA
212346 TAAATTTAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:219890 original size:2 final size:2
Alignment explanation
Indices: 219883--219913 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
219873 GGGAATTTGG
219883 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
219914 AAATAAATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:231019 original size:14 final size:15
Alignment explanation
Indices: 231000--231028 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
230990 TAGTCAAGTT
231000 CAATTGTTA-TGTAA
1 CAATTGTTACTGTAA
231014 CAATTGTTACTGTAA
1 CAATTGTTACTGTAA
231029 AAGATCTGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.34, C:0.10, G:0.14, T:0.41
Consensus pattern (15 bp):
CAATTGTTACTGTAA
Found at i:256658 original size:20 final size:21
Alignment explanation
Indices: 256618--256659 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
256608 AAAGGAATGA
*
256618 GCGGAAAAAGAAAGGGGAAAG
1 GCGGAAAAAGAAAGGGAAAAG
*
256639 GCGGAAAAAG-AATGGAAAAG
1 GCGGAAAAAGAAAGGGAAAAG
256659 G
1 G
256660 AAGGAAAGAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.52, C:0.05, G:0.40, T:0.02
Consensus pattern (21 bp):
GCGGAAAAAGAAAGGGAAAAG
Found at i:258693 original size:2 final size:2
Alignment explanation
Indices: 258636--258677 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
258626 ACTACAAGGC
*
258636 TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
258678 ACGATAGATT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:261667 original size:3 final size:3
Alignment explanation
Indices: 261650--261689 Score: 53
Period size: 3 Copynumber: 13.3 Consensus size: 3
261640 GAAGCCAATG
* * *
261650 GAA GAA GTA GTA GAA GAA GAA GAA GAA GCA GAA GAA GAA G
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA G
261690 CAATGTCGTC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.57, C:0.03, G:0.35, T:0.05
Consensus pattern (3 bp):
GAA
Found at i:266308 original size:2 final size:2
Alignment explanation
Indices: 266301--266325 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
266291 AAGAAACCCC
266301 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
266326 CACAATACAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:277238 original size:15 final size:15
Alignment explanation
Indices: 277218--277248 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
277208 GATGTAAAAA
277218 TTTCAAGGTACTACC
1 TTTCAAGGTACTACC
277233 TTTCAAGGTACTACC
1 TTTCAAGGTACTACC
277248 T
1 T
277249 AATTGGGTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.26, G:0.13, T:0.35
Consensus pattern (15 bp):
TTTCAAGGTACTACC
Found at i:277559 original size:14 final size:14
Alignment explanation
Indices: 277531--277572 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
277521 CCACCCCCGA
277531 CCCCCCCCCCC--C
1 CCCCCCCCCCCTTC
277543 CCCCCCCCCCCTTC
1 CCCCCCCCCCCTTC
**
277557 CCCCCTTCCCCTTC
1 CCCCCCCCCCCTTC
277571 CC
1 CC
277573 TTCCCTAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
12 11 0.42
14 15 0.58
ACGTcount: A:0.00, C:0.86, G:0.00, T:0.14
Consensus pattern (14 bp):
CCCCCCCCCCCTTC
Found at i:291844 original size:10 final size:11
Alignment explanation
Indices: 291807--291843 Score: 60
Period size: 10 Copynumber: 3.5 Consensus size: 11
291797 GTGCTTAAGA
291807 ATATATATA-T
1 ATATATATACT
291817 ATATATATACT
1 ATATATATACT
291828 ATATAT-TACT
1 ATATATATACT
291838 ATATAT
1 ATATAT
291844 TGTTAATTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 19 0.73
11 7 0.27
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (11 bp):
ATATATATACT
Found at i:291943 original size:93 final size:91
Alignment explanation
Indices: 291837--292017 Score: 344
Period size: 93 Copynumber: 2.0 Consensus size: 91
291827 TATATATTAC
291837 TATATATTGTTAATTAATGAAATGATGATCTGTTGTTGTTTCTAATTATATAAAAAATTCAGTTG
1 TATATATTGTTAATTAATGAAATGATGATCTGTTGTTGTTTCTAATTATATAAAAAATTCAGTTG
291902 GCATCCAACATTTAGATACAAATCNTA
66 GCATCCAACATTTAGATACAAATC-TA
291929 TATATATATGTTAATTAATGAAATGATGATCTGTTGTTGTTTCTAATTATATAAAAAATTCAGTT
1 TATATAT-TGTTAATTAATGAAATGATGATCTGTTGTTGTTTCTAATTATATAAAAAATTCAGTT
291994 GGCATCCAACATTTAGATACAAAT
65 GGCATCCAACATTTAGATACAAAT
292018 ACAAAAGAAT
Statistics
Matches: 88, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
92 7 0.08
93 81 0.92
ACGTcount: A:0.38, C:0.09, G:0.12, T:0.40
Consensus pattern (91 bp):
TATATATTGTTAATTAATGAAATGATGATCTGTTGTTGTTTCTAATTATATAAAAAATTCAGTTG
GCATCCAACATTTAGATACAAATCTA
Found at i:302681 original size:31 final size:31
Alignment explanation
Indices: 302646--302711 Score: 132
Period size: 31 Copynumber: 2.1 Consensus size: 31
302636 ACATTAGAAT
302646 AAAGCTAAATAGAAAGAAACAAATACATGAA
1 AAAGCTAAATAGAAAGAAACAAATACATGAA
302677 AAAGCTAAATAGAAAGAAACAAATACATGAA
1 AAAGCTAAATAGAAAGAAACAAATACATGAA
302708 AAAG
1 AAAG
302712 ATTTATATGT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.65, C:0.09, G:0.14, T:0.12
Consensus pattern (31 bp):
AAAGCTAAATAGAAAGAAACAAATACATGAA
Found at i:319594 original size:222 final size:222
Alignment explanation
Indices: 319208--319651 Score: 764
Period size: 222 Copynumber: 2.0 Consensus size: 222
319198 AATCCTCTAA
* *
319208 ACATAATAACATAAAGTGGTTGACAAATTCAGAGTATTACCCTCATCAACTCCATCTACACTGTC
1 ACATAATAACATAAAGTGGTTGACAAATTCAGAATATTACCCTCATCAACTCCATCTACACCGTC
*
319273 AGAATTGTCTGAGAATGAAGCTGTCTGCATATAGAGGATAGTTTTTTCTGATCAGGCCTTTGATG
66 AGAAATGTCTGAGAATGAAGCTGTCTGCATATAGAGGATAGTTTTTTCTGATCAGGCCTTTGATG
319338 CATTTCCAGTAAGAAAAGACAACCAGTTCTCCATCTTTCCAAACTATGAACAAACATCTTAAGCC
131 CATTTCCAGTAAGAAAAGACAACCAGTTCTCCATCTTTCCAAACTATGAACAAACATCTTAAGCC
319403 TTCAAAGTCAGGATGGCAACCAACCTG
196 TTCAAAGTCAGGATGGCAACCAACCTG
* * *
319430 ACATAATAACATAAAGTGGTTGACAAGTTCAGAATATTACCCTCATCAACTCCGTCTACGCCGTC
1 ACATAATAACATAAAGTGGTTGACAAATTCAGAATATTACCCTCATCAACTCCATCTACACCGTC
319495 -GAAAATGTCTGAGAATGAAGCTGTCTGCATATAGAGGATAGTTTTTTCTGATCAGGCCTTTGAT
66 AG-AAATGTCTGAGAATGAAGCTGTCTGCATATAGAGGATAGTTTTTTCTGATCAGGCCTTTGAT
* * * * *
319559 GCATTTCCAGTAAGAAAAGTCAATCAGTTCTCCATCTTTTCGAACTATGAACAAACATCTTGAGC
130 GCATTTCCAGTAAGAAAAGACAACCAGTTCTCCATCTTTCCAAACTATGAACAAACATCTTAAGC
*
319624 CTTCAAAGTCAGGATGGTAACCAACCTG
195 CTTCAAAGTCAGGATGGCAACCAACCTG
319652 TGAACCAAAA
Statistics
Matches: 209, Mismatches: 12, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
221 1 0.00
222 208 1.00
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (222 bp):
ACATAATAACATAAAGTGGTTGACAAATTCAGAATATTACCCTCATCAACTCCATCTACACCGTC
AGAAATGTCTGAGAATGAAGCTGTCTGCATATAGAGGATAGTTTTTTCTGATCAGGCCTTTGATG
CATTTCCAGTAAGAAAAGACAACCAGTTCTCCATCTTTCCAAACTATGAACAAACATCTTAAGCC
TTCAAAGTCAGGATGGCAACCAACCTG
Found at i:331358 original size:15 final size:15
Alignment explanation
Indices: 331338--331371 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
331328 GCACCATTTC
331338 TTTTCTTTTCTTT-TA
1 TTTTCTTTT-TTTGTA
331353 TTTTCTTTTTTTGTA
1 TTTTCTTTTTTTGTA
331368 TTTT
1 TTTT
331372 GGCAACTATC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 3 0.17
15 15 0.83
ACGTcount: A:0.06, C:0.09, G:0.03, T:0.82
Consensus pattern (15 bp):
TTTTCTTTTTTTGTA
Found at i:338194 original size:2 final size:2
Alignment explanation
Indices: 338183--338213 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
338173 CGCCTCGCCT
338183 TC TC -C TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
338214 GTTCCTTCAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
TC
Found at i:345804 original size:22 final size:22
Alignment explanation
Indices: 345729--345826 Score: 110
Period size: 22 Copynumber: 4.5 Consensus size: 22
345719 ATTTTTGGGT
*
345729 ATTACGTGACTAGTTTTTAGGC
1 ATTACGTGACTAGCTTTTAGGC
* * *
345751 ATTGCATGACTAGCTTTTAGGT
1 ATTACGTGACTAGCTTTTAGGC
* *
345773 ATTGCATGACTAGCTTTTAGGC
1 ATTACGTGACTAGCTTTTAGGC
*
345795 ATTACGTGACT-GAC-TTTAGAC
1 ATTACGTGACTAG-CTTTTAGGC
345816 ATTACGTGACT
1 ATTACGTGACT
345827 GACTTTGGGC
Statistics
Matches: 67, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
21 18 0.27
22 49 0.73
ACGTcount: A:0.24, C:0.16, G:0.21, T:0.38
Consensus pattern (22 bp):
ATTACGTGACTAGCTTTTAGGC
Found at i:345839 original size:21 final size:21
Alignment explanation
Indices: 345788--345845 Score: 89
Period size: 21 Copynumber: 2.8 Consensus size: 21
345778 ATGACTAGCT
345788 TTTAGGCATTACGTGACTGAC
1 TTTAGGCATTACGTGACTGAC
*
345809 TTTAGACATTACGTGACTGAC
1 TTTAGGCATTACGTGACTGAC
* *
345830 TTTGGGCATTGCGTGA
1 TTTAGGCATTACGTGA
345846 TTGGTTGATA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.22, C:0.17, G:0.26, T:0.34
Consensus pattern (21 bp):
TTTAGGCATTACGTGACTGAC
Found at i:345891 original size:22 final size:23
Alignment explanation
Indices: 345834--345938 Score: 81
Period size: 23 Copynumber: 4.6 Consensus size: 23
345824 ACTGACTTTG
* *
345834 GGCATTGCGTGATTGGTTGATAT
1 GGCATTGCGTGACTAGTTGATAT
*
345857 GGCATTGCATGACTAGTTGATAT
1 GGCATTGCGTGACTAGTTGATAT
* * * *
345880 -GTATTGCGTGACT-TTTTAGTAA
1 GGCATTGCGTGACTAGTTGA-TAT
* * *
345902 GGCATTGCGTGACT-TTTTAGTAA
1 GGCATTGCGTGACTAGTTGA-TAT
345925 GGCATTGCGTGACT
1 GGCATTGCGTGACT
345939 TGTTAGGAAA
Statistics
Matches: 71, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
21 3 0.04
22 13 0.18
23 55 0.77
ACGTcount: A:0.21, C:0.12, G:0.29, T:0.38
Consensus pattern (23 bp):
GGCATTGCGTGACTAGTTGATAT
Found at i:345939 original size:23 final size:23
Alignment explanation
Indices: 345882--345944 Score: 117
Period size: 23 Copynumber: 2.7 Consensus size: 23
345872 GTTGATATGT
345882 ATTGCGTGACTTTTTAGTAAGGC
1 ATTGCGTGACTTTTTAGTAAGGC
345905 ATTGCGTGACTTTTTAGTAAGGC
1 ATTGCGTGACTTTTTAGTAAGGC
*
345928 ATTGCGTGACTTGTTAG
1 ATTGCGTGACTTTTTAG
345945 GAAAGTATTA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
23 39 1.00
ACGTcount: A:0.21, C:0.13, G:0.27, T:0.40
Consensus pattern (23 bp):
ATTGCGTGACTTTTTAGTAAGGC
Found at i:345958 original size:23 final size:23
Alignment explanation
Indices: 345882--345975 Score: 116
Period size: 23 Copynumber: 4.1 Consensus size: 23
345872 GTTGATATGT
* *
345882 ATTGCGTGACTTTTTAGTAAGGC
1 ATTGCGTGACTTGTTAGTAAAGC
* *
345905 ATTGCGTGACTTTTTAGTAAGGC
1 ATTGCGTGACTTGTTAGTAAAGC
* *
345928 ATTGCGTGACTTGTTAGGAAAGT
1 ATTGCGTGACTTGTTAGTAAAGC
* *
345951 ATTACGTGACTAGTTAGTAAAGC
1 ATTGCGTGACTTGTTAGTAAAGC
345974 AT
1 AT
345976 AGTATGACTT
Statistics
Matches: 63, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 63 1.00
ACGTcount: A:0.27, C:0.12, G:0.26, T:0.36
Consensus pattern (23 bp):
ATTGCGTGACTTGTTAGTAAAGC
Found at i:347994 original size:20 final size:21
Alignment explanation
Indices: 347969--348018 Score: 66
Period size: 24 Copynumber: 2.3 Consensus size: 21
347959 TCTCATCCCC
347969 CTTCGT-TTGCACTCTTGTTT
1 CTTCGTATTGCACTCTTGTTT
347989 CTTCGTCATATTGCACTCTTGTTT
1 CTTCG---TATTGCACTCTTGTTT
348013 CTTCGT
1 CTTCGT
348019 CATATATTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
20 5 0.19
21 1 0.04
23 1 0.04
24 19 0.73
ACGTcount: A:0.08, C:0.26, G:0.14, T:0.52
Consensus pattern (21 bp):
CTTCGTATTGCACTCTTGTTT
Found at i:348007 original size:24 final size:24
Alignment explanation
Indices: 347975--348023 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
347965 CCCCCTTCGT
347975 TTGCACTCTTGTTTCTTCGTCATA
1 TTGCACTCTTGTTTCTTCGTCATA
347999 TTGCACTCTTGTTTCTTCGTCATA
1 TTGCACTCTTGTTTCTTCGTCATA
348023 T
1 T
348024 ATTAATTAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.12, C:0.24, G:0.12, T:0.51
Consensus pattern (24 bp):
TTGCACTCTTGTTTCTTCGTCATA
Found at i:349021 original size:2 final size:2
Alignment explanation
Indices: 349014--349054 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
349004 ATAAATGAGG
349014 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
349055 AATAATAAAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:349819 original size:2 final size:2
Alignment explanation
Indices: 349812--349853 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
349802 NNNNNNNNNN
349812 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
349854 ACTATCAAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:365623 original size:22 final size:22
Alignment explanation
Indices: 365595--365636 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
365585 TAAACTTCAA
365595 TTTAATT-TGAAGTTTTGTTTTT
1 TTTAATTCTG-AGTTTTGTTTTT
*
365617 TTTAATTCTGGGTTTTGTTT
1 TTTAATTCTGAGTTTTGTTT
365637 ATGAGGTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 16 0.89
23 2 0.11
ACGTcount: A:0.14, C:0.02, G:0.17, T:0.67
Consensus pattern (22 bp):
TTTAATTCTGAGTTTTGTTTTT
Found at i:370644 original size:57 final size:57
Alignment explanation
Indices: 370556--370668 Score: 217
Period size: 57 Copynumber: 2.0 Consensus size: 57
370546 CGCAATTACC
*
370556 TCTTATCCGCTATGTTAAATATTCCTCTGTTTTCAATGTTATTATTGTCTCTTTCCA
1 TCTTATCCGCTATGTTAAATATTCCTCTGTTTTCAATATTATTATTGTCTCTTTCCA
370613 TCTTATCCGCTATGTTAAATATTCCTCTGTTTTCAATATTATTATTGTCTCTTTCC
1 TCTTATCCGCTATGTTAAATATTCCTCTGTTTTCAATATTATTATTGTCTCTTTCC
370669 CTCTCTCTCA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 55 1.00
ACGTcount: A:0.19, C:0.21, G:0.08, T:0.51
Consensus pattern (57 bp):
TCTTATCCGCTATGTTAAATATTCCTCTGTTTTCAATATTATTATTGTCTCTTTCCA
Found at i:388184 original size:3 final size:3
Alignment explanation
Indices: 388176--388205 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
388166 GATTAAGGAA
*
388176 AAT AAT AAT AAT AAT AAT ATT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
388206 CCACACGGAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (3 bp):
AAT
Found at i:390610 original size:13 final size:13
Alignment explanation
Indices: 390566--390613 Score: 60
Period size: 13 Copynumber: 3.5 Consensus size: 13
390556 TATTACAAAC
390566 AAATAAATTACAT
1 AAATAAATTACAT
* *
390579 CAAATATAAATAAAT
1 -AAATA-AATTACAT
390594 AAATAAATTACAT
1 AAATAAATTACAT
390607 AAATAAA
1 AAATAAA
390614 GTTTCAATCA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
13 13 0.45
14 10 0.34
15 6 0.21
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (13 bp):
AAATAAATTACAT
Found at i:390939 original size:22 final size:22
Alignment explanation
Indices: 390896--390944 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
390886 AATACTATTG
**
390896 ATAATTAAATTATTAATTTTAT
1 ATAATTAAATTATTAAAATTAT
390918 ATAATTAAA-TATATAAAATTAT
1 ATAATTAAATTAT-TAAAATTAT
390940 -TAATT
1 ATAATT
390945 TATTTTTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 8 0.33
22 16 0.67
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (22 bp):
ATAATTAAATTATTAAAATTAT
Found at i:391597 original size:2 final size:2
Alignment explanation
Indices: 391585--391676 Score: 143
Period size: 2 Copynumber: 46.5 Consensus size: 2
391575 ATCAAAGAGA
391585 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
391626 AT AC AGN AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
391668 AT AT AT AT A
1 AT AT AT AT A
391677 CCAGAGAGCA
Statistics
Matches: 84, Mismatches: 3, Indels: 6
0.90 0.03 0.06
Matches are distributed among these distances:
1 2 0.02
2 81 0.96
3 1 0.01
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.46
Consensus pattern (2 bp):
AT
Found at i:403343 original size:24 final size:23
Alignment explanation
Indices: 403286--403331 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
403276 ATACAATAAC
**
403286 CTTATCCTAATTTAATTAGAAAT
1 CTTATCCTAATAGAATTAGAAAT
403309 CTTATCCTAATAGAATTAGAAAT
1 CTTATCCTAATAGAATTAGAAAT
403332 TGTTATTCTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.41, C:0.13, G:0.07, T:0.39
Consensus pattern (23 bp):
CTTATCCTAATAGAATTAGAAAT
Found at i:411784 original size:2 final size:2
Alignment explanation
Indices: 411777--411851 Score: 141
Period size: 2 Copynumber: 37.5 Consensus size: 2
411767 GTTGTGAAGG
*
411777 TA TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
411819 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
411852 NNNNNNNNNN
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
2 71 1.00
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:436126 original size:15 final size:17
Alignment explanation
Indices: 436098--436130 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
436088 GAGAATACTA
436098 TTTTCTTTTCTTTTTTG
1 TTTTCTTTTCTTTTTTG
436115 TTTT-TTTT-TTTTTTG
1 TTTTCTTTTCTTTTTTG
436130 T
1 T
436131 CTCATTCATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
16 4 0.25
17 4 0.25
ACGTcount: A:0.00, C:0.06, G:0.06, T:0.88
Consensus pattern (17 bp):
TTTTCTTTTCTTTTTTG
Found at i:467735 original size:3 final size:3
Alignment explanation
Indices: 467727--467754 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
467717 TGTATAAGTA
467727 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
467755 TAAACTAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:473919 original size:2 final size:2
Alignment explanation
Indices: 473914--473938 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
473904 ATATGTTCAA
473914 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
473939 CGAAAAGGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:479087 original size:77 final size:76
Alignment explanation
Indices: 478955--479108 Score: 202
Period size: 77 Copynumber: 2.0 Consensus size: 76
478945 CCTAGCTCAA
* * * * * **
478955 CCTTTTAACTTTTGAACCCGAGTGGCTGAGTCCGAACTCTTGCAAGCAGACGCATAACCTGAAAA
1 CCTTTTAACTCTTGAACCCGAGTGGCTGAGTCCGAAATCGTGCAAGCAAAAGCATAAAATG-AAA
479020 ACGACGACGTAG
65 ACGACGACGTAG
* *
479032 CCTTTTAACTCTTGAACCCGATTGGCTGAG-CCAGAAATCGTGCAAGCAAAAGCATAAAATGGAA
1 CCTTTTAACTCTTGAACCCGAGTGGCTGAGTCC-GAAATCGTGCAAGCAAAAGCATAAAATGAAA
479096 ACGACGACGTAG
65 ACGACGACGTAG
479108 C
1 C
479109 ATGAGTTCTC
Statistics
Matches: 67, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
76 17 0.25
77 50 0.75
ACGTcount: A:0.32, C:0.25, G:0.22, T:0.21
Consensus pattern (76 bp):
CCTTTTAACTCTTGAACCCGAGTGGCTGAGTCCGAAATCGTGCAAGCAAAAGCATAAAATGAAAA
CGACGACGTAG
Found at i:505249 original size:23 final size:23
Alignment explanation
Indices: 505222--505269 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
505212 CTGAGATGAT
505222 TCTGTTTTGTTACATGACAGTTC
1 TCTGTTTTGTTACATGACAGTTC
*
505245 TCTGTTTTGTTACGTGACAGTTC
1 TCTGTTTTGTTACATGACAGTTC
505268 TC
1 TC
505270 CCTTTGCACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.15, C:0.19, G:0.19, T:0.48
Consensus pattern (23 bp):
TCTGTTTTGTTACATGACAGTTC
Found at i:512324 original size:90 final size:90
Alignment explanation
Indices: 512164--512458 Score: 464
Period size: 90 Copynumber: 3.3 Consensus size: 90
512154 ATTTGAAGTT
* *
512164 TCACAAGTTTTTGTACAAGACGTGTAACACGCTAACCATGGCTTGTCACAGGCTTTTGTACATGG
1 TCACAAGTTTTTGTACATGACGTGTAACACGTTAACCATGGCTTGTCACAGGCTTTTGTACATGG
* * *
512229 CGTGTCACACGCTAACAATGACTTG
66 TGTGTCACACGCTAACCATGGCTTG
* * * *
512254 TCACAGGTTTTTATACATGACGTGTAACACGTTAACCATGGCTTGTCACAGGTTTTTGTATATGG
1 TCACAAGTTTTTGTACATGACGTGTAACACGTTAACCATGGCTTGTCACAGGCTTTTGTACATGG
*
512319 TGTGTCACACGCTAACCATGGCTTA
66 TGTGTCACACGCTAACCATGGCTTG
* * * *
512344 TCACAGGCTTTTGTACATGACGTATAACACGTTAACCATGGCTTGTCACGGGCTTTTGTACATGG
1 TCACAAGTTTTTGTACATGACGTGTAACACGTTAACCATGGCTTGTCACAGGCTTTTGTACATGG
512409 TGTGTCACACGCTAACCATGGCTTG
66 TGTGTCACACGCTAACCATGGCTTG
512434 TCACAAGTTTTTGTACATGACGTGT
1 TCACAAGTTTTTGTACATGACGTGT
512459 CACATGTTTT
Statistics
Matches: 185, Mismatches: 20, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
90 185 1.00
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.32
Consensus pattern (90 bp):
TCACAAGTTTTTGTACATGACGTGTAACACGTTAACCATGGCTTGTCACAGGCTTTTGTACATGG
TGTGTCACACGCTAACCATGGCTTG
Found at i:512459 original size:24 final size:24
Alignment explanation
Indices: 512432--512664 Score: 91
Period size: 24 Copynumber: 10.1 Consensus size: 24
512422 AACCATGGCT
512432 TGTCACAAGTTTTTGTACATGACG
1 TGTCACAAGTTTTTGTACATGACG
* **
512456 TGTCACATGTTTTTGTACATGGTG
1 TGTCACAAGTTTTTGTACATGACG
* * * * *
512480 TGTAACACG---CT-AACTATGACT
1 TGTCACAAGTTTTTGTAC-ATGACG
512501 TGTCACAAGTTTTTGTACATGACG
1 TGTCACAAGTTTTTGTACATGACG
** * * *
512525 TGTCAC-A--TGCT-AACTATGGCT
1 TGTCACAAGTTTTTGTAC-ATGACG
* *
512546 TGTCACAGGTTTTTGTATATGACG
1 TGTCACAAGTTTTTGTACATGACG
* * *
512570 TATCACATG-TTTTGTATAT-AGCG
1 TGTCACAAGTTTTTGTACATGA-CG
* * * *
512593 TGTCACACG---CT-AACCATGACT
1 TGTCACAAGTTTTTGTA-CATGACG
* * *
512614 TGTTACAGGTTTTTGTACATGGCG
1 TGTCACAAGTTTTTGTACATGACG
512638 TGTCAC-AGATTTTTGTACATGACG
1 TGTCACAAG-TTTTTGTACATGACG
512662 TGT
1 TGT
512665 AACACGCTAA
Statistics
Matches: 147, Mismatches: 44, Indels: 36
0.65 0.19 0.16
Matches are distributed among these distances:
20 5 0.03
21 34 0.23
22 2 0.01
23 21 0.14
24 81 0.55
25 4 0.03
ACGTcount: A:0.24, C:0.18, G:0.21, T:0.38
Consensus pattern (24 bp):
TGTCACAAGTTTTTGTACATGACG
Found at i:512459 original size:45 final size:45
Alignment explanation
Indices: 512164--512462 Score: 391
Period size: 45 Copynumber: 6.6 Consensus size: 45
512154 ATTTGAAGTT
* * *
512164 TCACAAGTTTTTGTACAAGACGTGTAACACGCTAACCATGGCTTG
1 TCACAGGTTTTTGTACATGACGTGTCACACGCTAACCATGGCTTG
* * * *
512209 TCACAGGCTTTTGTACATGGCGTGTCACACGCTAACAATGACTTG
1 TCACAGGTTTTTGTACATGACGTGTCACACGCTAACCATGGCTTG
* * *
512254 TCACAGGTTTTTATACATGACGTGTAACACGTTAACCATGGCTTG
1 TCACAGGTTTTTGTACATGACGTGTCACACGCTAACCATGGCTTG
* ** *
512299 TCACAGGTTTTTGTATATGGTGTGTCACACGCTAACCATGGCTTA
1 TCACAGGTTTTTGTACATGACGTGTCACACGCTAACCATGGCTTG
* * * *
512344 TCACAGGCTTTTGTACATGACGTATAACACGTTAACCATGGCTTG
1 TCACAGGTTTTTGTACATGACGTGTCACACGCTAACCATGGCTTG
* * **
512389 TCACGGGCTTTTGTACATGGTGTGTCACACGCTAACCATGGCTTG
1 TCACAGGTTTTTGTACATGACGTGTCACACGCTAACCATGGCTTG
*
512434 TCACAAGTTTTTGTACATGACGTGTCACA
1 TCACAGGTTTTTGTACATGACGTGTCACA
512463 TGTTTTTGTA
Statistics
Matches: 214, Mismatches: 40, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 214 1.00
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.32
Consensus pattern (45 bp):
TCACAGGTTTTTGTACATGACGTGTCACACGCTAACCATGGCTTG
Found at i:512473 original size:69 final size:69
Alignment explanation
Indices: 512397--512533 Score: 247
Period size: 69 Copynumber: 2.0 Consensus size: 69
512387 TGTCACGGGC
* *
512397 TTTTGTACATGGTGTGTCACACGCTAACCATGGCTTGTCACAAGTTTTTGTACATGACGTGTCAC
1 TTTTGTACATGGTGTGTAACACGCTAACCATGACTTGTCACAAGTTTTTGTACATGACGTGTCAC
512462 ATGT
66 ATGT
*
512466 TTTTGTACATGGTGTGTAACACGCTAACTATGACTTGTCACAAGTTTTTGTACATGACGTGTCAC
1 TTTTGTACATGGTGTGTAACACGCTAACCATGACTTGTCACAAGTTTTTGTACATGACGTGTCAC
512531 ATG
66 ATG
512534 CTAACTATGG
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
69 65 1.00
ACGTcount: A:0.23, C:0.19, G:0.21, T:0.36
Consensus pattern (69 bp):
TTTTGTACATGGTGTGTAACACGCTAACCATGACTTGTCACAAGTTTTTGTACATGACGTGTCAC
ATGT
Found at i:512503 original size:114 final size:113
Alignment explanation
Indices: 512342--512644 Score: 399
Period size: 114 Copynumber: 2.7 Consensus size: 113
512332 AACCATGGCT
* * * * * * *
512342 TATCACAGGCTTTTGTACATGACGTATAACACGTTAACCATGGCTTGTCACGGGCTTTTGTACAT
1 TATCACATG-TTTTGTACATGGCGTGTAACACGCTAACCATGACTTGTCACAGGTTTTTGTACAT
*
512407 GGTGTGTCACACGCTAACCATGGCTTGTCACAAGTTTTTGTACATGACG
65 GGCGTGTCACACGCTAACCATGGCTTGTCACAAGTTTTTGTACATGACG
* * * *
512456 TGTCACATGTTTTTGTACATGGTGTGTAACACGCTAACTATGACTTGTCACAAGTTTTTGTACAT
1 TATCACATG-TTTTGTACATGGCGTGTAACACGCTAACCATGACTTGTCACAGGTTTTTGTACAT
* * * * *
512521 GACGTGTCACATGCTAACTATGGCTTGTCACAGGTTTTTGTATATGACG
65 GGCGTGTCACACGCTAACCATGGCTTGTCACAAGTTTTTGTACATGACG
* * * *
512570 TATCACATGTTTTGTATATAGCGTGTCACACGCTAACCATGACTTGTTACAGGTTTTTGTACATG
1 TATCACATGTTTTGTACATGGCGTGTAACACGCTAACCATGACTTGTCACAGGTTTTTGTACATG
512635 GCGTGTCACA
66 GCGTGTCACA
512645 GATTTTTGTA
Statistics
Matches: 162, Mismatches: 27, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
113 58 0.36
114 104 0.64
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.35
Consensus pattern (113 bp):
TATCACATGTTTTGTACATGGCGTGTAACACGCTAACCATGACTTGTCACAGGTTTTTGTACATG
GCGTGTCACACGCTAACCATGGCTTGTCACAAGTTTTTGTACATGACG
Found at i:512576 original size:45 final size:45
Alignment explanation
Indices: 512450--512578 Score: 168
Period size: 45 Copynumber: 2.9 Consensus size: 45
512440 GTTTTTGTAC
* * ** * *
512450 ATGACGTGTCACATGTTTTTGTACATGGTGTGTAACACGCTAACT
1 ATGACTTGTCACAAGTTTTTGTACATGACGTGTCACATGCTAACT
512495 ATGACTTGTCACAAGTTTTTGTACATGACGTGTCACATGCTAACT
1 ATGACTTGTCACAAGTTTTTGTACATGACGTGTCACATGCTAACT
* * * *
512540 ATGGCTTGTCACAGGTTTTTGTATATGACGTATCACATG
1 ATGACTTGTCACAAGTTTTTGTACATGACGTGTCACATG
512579 TTTTGTATAT
Statistics
Matches: 74, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 74 1.00
ACGTcount: A:0.25, C:0.18, G:0.21, T:0.36
Consensus pattern (45 bp):
ATGACTTGTCACAAGTTTTTGTACATGACGTGTCACATGCTAACT
Found at i:512605 original size:68 final size:68
Alignment explanation
Indices: 512511--512703 Score: 246
Period size: 68 Copynumber: 2.8 Consensus size: 68
512501 TGTCACAAGT
* * * *
512511 TTTTGTACATGACGTGTCACATGCTAACTATGGCTTGTCACAGGTTTTTGTATATGACGTATCAC
1 TTTTGTACATGACGTGTCACACGCTAACCATGACTTGTCACAGGTTTTTGTACATGACGTATCAC
512576 ATG-
66 A-GA
* * * *
512579 TTTTGTATAT-AGCGTGTCACACGCTAACCATGACTTGTTACAGGTTTTTGTACATGGCGTGTCA
1 TTTTGTACATGA-CGTGTCACACGCTAACCATGACTTGTCACAGGTTTTTGTACATGACGTATCA
512643 CAGA
65 CAGA
* * *
512647 TTTTTGTACATGACGTGTAACACGCTAACCATGACTTGTCACAGATTTTTATACATG
1 -TTTTGTACATGACGTGTCACACGCTAACCATGACTTGTCACAGGTTTTTGTACATG
512704 GCGTGTAATA
Statistics
Matches: 108, Mismatches: 13, Indels: 7
0.84 0.10 0.05
Matches are distributed among these distances:
67 2 0.02
68 56 0.52
69 49 0.45
70 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.37
Consensus pattern (68 bp):
TTTTGTACATGACGTGTCACACGCTAACCATGACTTGTCACAGGTTTTTGTACATGACGTATCAC
AGA
Found at i:512702 original size:69 final size:68
Alignment explanation
Indices: 512501--512709 Score: 269
Period size: 69 Copynumber: 3.0 Consensus size: 68
512491 AACTATGACT
* * * *
512501 TGTCACAAGTTTTTGTACATGACGTGTCACATGCTAACTATGGCTTGTCACAGGTTTTTGTATAT
1 TGTCACAA-TTTTTGTACATGACGTGTCACACGCTAACCATGACTTGTCACAGGTTTTTGTACAT
*
512566 GACG
65 GGCG
* * *
512570 TATCAC-ATGTTTTGTATAT-AGCGTGTCACACGCTAACCATGACTTGTTACAGGTTTTTGTACA
1 TGTCACAAT-TTTTGTACATGA-CGTGTCACACGCTAACCATGACTTGTCACAGGTTTTTGTACA
512633 TGGCG
64 TGGCG
* * *
512638 TGTCACAGATTTTTGTACATGACGTGTAACACGCTAACCATGACTTGTCACAGATTTTTATACAT
1 TGTCACA-ATTTTTGTACATGACGTGTCACACGCTAACCATGACTTGTCACAGGTTTTTGTACAT
512703 GGCG
65 GGCG
512707 TGT
1 TGT
512710 AATATCATAG
Statistics
Matches: 121, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
67 2 0.02
68 56 0.46
69 60 0.50
70 3 0.02
ACGTcount: A:0.24, C:0.19, G:0.21, T:0.36
Consensus pattern (68 bp):
TGTCACAATTTTTGTACATGACGTGTCACACGCTAACCATGACTTGTCACAGGTTTTTGTACATG
GCG
Found at i:532377 original size:6 final size:6
Alignment explanation
Indices: 532360--532394 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
532350 TTCTCTTACC
* *
532360 AGGGAG AAGGAG AGGGAG AGGGAG AGGGCG AGGGA
1 AGGGAG AGGGAG AGGGAG AGGGAG AGGGAG AGGGA
532395 TTGTCTTTGT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.34, C:0.03, G:0.63, T:0.00
Consensus pattern (6 bp):
AGGGAG
Found at i:547710 original size:21 final size:22
Alignment explanation
Indices: 547667--547711 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
547657 ATGTGGAGTA
*
547667 AAGGAACAAGTGAAAATGAAAG
1 AAGGAACAAGTGAAAAGGAAAG
*
547689 AAGGAACAA-TGATAAGGAAAG
1 AAGGAACAAGTGAAAAGGAAAG
547710 AA
1 AA
547712 CTTCATATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 12 0.57
22 9 0.43
ACGTcount: A:0.60, C:0.04, G:0.27, T:0.09
Consensus pattern (22 bp):
AAGGAACAAGTGAAAAGGAAAG
Found at i:550668 original size:2 final size:2
Alignment explanation
Indices: 550643--550691 Score: 64
Period size: 2 Copynumber: 25.0 Consensus size: 2
550633 TCGGCTTTTT
* * *
550643 TA TA -A TA TA CA TA CA TA CA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
550684 TA TA TA TA
1 TA TA TA TA
550692 GCAGTGACCT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
1 1 0.03
2 39 0.98
ACGTcount: A:0.51, C:0.06, G:0.00, T:0.43
Consensus pattern (2 bp):
TA
Found at i:553944 original size:3 final size:3
Alignment explanation
Indices: 553936--553966 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
553926 AGTTTTTTAT
553936 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
553967 AAGTGTAAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:559054 original size:43 final size:43
Alignment explanation
Indices: 558971--559054 Score: 114
Period size: 43 Copynumber: 2.0 Consensus size: 43
558961 TCTAAAATTT
* **
558971 GCTTTTGTAAATGTAGCAAGTACATAATTGGCATTGTAAAATG
1 GCTTTTGTAAATGTAGCAAGTACATAATTAGCATCATAAAATG
* * *
559014 GCTTTTGTGAATGTAGCAATTACATGATTAGCATCATAAAA
1 GCTTTTGTAAATGTAGCAAGTACATAATTAGCATCATAAAA
559055 GAATGTCAGT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.35
Consensus pattern (43 bp):
GCTTTTGTAAATGTAGCAAGTACATAATTAGCATCATAAAATG
Found at i:561985 original size:21 final size:21
Alignment explanation
Indices: 561953--561995 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 21
561943 GAGCTACTTT
561953 CTCTCTCCCCT-CTCTCTCCTC
1 CTCTCTCCCCTCCTC-CTCCTC
561974 CTCTC-CCACCTCCTCCTCCTC
1 CTCTCTCC-CCTCCTCCTCCTC
561995 C
1 C
561996 GCCATGTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
20 2 0.10
21 15 0.75
22 3 0.15
ACGTcount: A:0.02, C:0.65, G:0.00, T:0.33
Consensus pattern (21 bp):
CTCTCTCCCCTCCTCCTCCTC
Found at i:573211 original size:29 final size:29
Alignment explanation
Indices: 573137--573212 Score: 91
Period size: 29 Copynumber: 2.6 Consensus size: 29
573127 TAGGTTTATA
*
573137 AGAATAGGTATAAGAGAAGAAGTTGTACG
1 AGAATAGGTATAAGAGAAGAAGCTGTACG
* *
573166 AGAATAGGTACAAGAGAATAAGCTGTAC-
1 AGAATAGGTATAAGAGAAGAAGCTGTACG
* *
573194 ATGAATAAGTATATGAGAA
1 A-GAATAGGTATAAGAGAA
573213 CAAGGTAAGA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
28 1 0.03
29 39 0.98
ACGTcount: A:0.47, C:0.05, G:0.26, T:0.21
Consensus pattern (29 bp):
AGAATAGGTATAAGAGAAGAAGCTGTACG
Found at i:573519 original size:26 final size:26
Alignment explanation
Indices: 573480--573529 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
573470 AAGTAGTACT
* *
573480 TGAAGTAGCGCTTCACTTATTCTGCG
1 TGAAGTAACACTTCACTTATTCTGCG
*
573506 TGAAGTAACACTTCACTTGTTCTG
1 TGAAGTAACACTTCACTTATTCTG
573530 GTTATTCTCT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.36
Consensus pattern (26 bp):
TGAAGTAACACTTCACTTATTCTGCG
Found at i:585376 original size:12 final size:12
Alignment explanation
Indices: 585359--585385 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
585349 TGGTACATAA
585359 AAGCCAATCAGT
1 AAGCCAATCAGT
585371 AAGCCAATCAGT
1 AAGCCAATCAGT
585383 AAG
1 AAG
585386 AACTCCAGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.44, C:0.22, G:0.19, T:0.15
Consensus pattern (12 bp):
AAGCCAATCAGT
Found at i:605709 original size:16 final size:17
Alignment explanation
Indices: 605676--605711 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
605666 ATTCTCAATC
*
605676 CCACAGCTCTTCTCGGT
1 CCACAGCTCTTATCGGT
605693 CCACAGC-CTTATCGGT
1 CCACAGCTCTTATCGGT
605709 CCA
1 CCA
605712 ACCACGATGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 11 0.61
17 7 0.39
ACGTcount: A:0.17, C:0.42, G:0.17, T:0.25
Consensus pattern (17 bp):
CCACAGCTCTTATCGGT
Found at i:605882 original size:30 final size:30
Alignment explanation
Indices: 605848--605905 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
605838 TAAAAAAAAT
* *
605848 TATTTT-TTATTATATTTAATTAATTTTTTA
1 TATTTTATTATTA-ATTAAATAAATTTTTTA
*
605878 TATTTTATTTTTAATTAAATAAATTTTT
1 TATTTTATTATTAATTAAATAAATTTTT
605906 ATTATTAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 19 0.79
31 5 0.21
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (30 bp):
TATTTTATTATTAATTAAATAAATTTTTTA
Found at i:605891 original size:21 final size:21
Alignment explanation
Indices: 605850--605893 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 21
605840 AAAAAAATTA
605850 TTTTTTATTATATTTAATTAAT
1 TTTTTTATTATATTT-ATTAAT
*
605872 TTTTTATATTTTATTT-TTAAT
1 TTTTT-TATTATATTTATTAAT
605893 T
1 T
605894 AAATAAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 6 0.30
22 5 0.25
23 9 0.45
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (21 bp):
TTTTTTATTATATTTATTAAT
Found at i:630511 original size:24 final size:23
Alignment explanation
Indices: 630466--630526 Score: 72
Period size: 24 Copynumber: 2.7 Consensus size: 23
630456 TTTTTTAAAC
630466 ATAATATAAATA-TATACAATAT
1 ATAATATAAATATTATACAATAT
* *
630488 ATTTTATATAAATATTATTC-ATAT
1 A--TAATATAAATATTATACAATAT
630512 ATAATATAAATATTA
1 ATAATATAAATATTA
630527 ATAATTTTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
22 14 0.42
24 15 0.45
25 4 0.12
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.44
Consensus pattern (23 bp):
ATAATATAAATATTATACAATAT
Found at i:636781 original size:72 final size:72
Alignment explanation
Indices: 636693--636833 Score: 183
Period size: 72 Copynumber: 2.0 Consensus size: 72
636683 AAGAGAGGGT
* * * *
636693 TCGAACATGCTATCTTAAGGCAGTTATTAACTAATTGCTGTGAGTTATGAAACAAATATATAATT
1 TCGAACATGCTATCTTAAGGCAGTTATTAACTAACTACTGCGAGATATGAAACAAATATATAATT
636758 AATGTAG
66 AATGTAG
* ** * * * *
636765 TCGAACATGCTGTCTTAAGGTGGTTGTTAACTAACTATTGCGAGATATGAAACAAATGTGTAATT
1 TCGAACATGCTATCTTAAGGCAGTTATTAACTAACTACTGCGAGATATGAAACAAATATATAATT
636830 AATG
66 AATG
636834 CAAGTATGAC
Statistics
Matches: 58, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
72 58 1.00
ACGTcount: A:0.35, C:0.11, G:0.19, T:0.34
Consensus pattern (72 bp):
TCGAACATGCTATCTTAAGGCAGTTATTAACTAACTACTGCGAGATATGAAACAAATATATAATT
AATGTAG
Found at i:641582 original size:47 final size:47
Alignment explanation
Indices: 641513--641608 Score: 156
Period size: 47 Copynumber: 2.0 Consensus size: 47
641503 GCTGCCAACA
* * *
641513 GATAGTTTATCTATAAAATCCAAGAGAAGGGCTATCAAAACCCGGCT
1 GATAGTTTATCCATAAAATCCAAGAGAAGGGCTACCAAAACCAGGCT
*
641560 GATAGTTTATCCATAAAATCCAAGAGAAGGGCTGCCAAAACCAGGCT
1 GATAGTTTATCCATAAAATCCAAGAGAAGGGCTACCAAAACCAGGCT
641607 GA
1 GA
641609 GGAAAACACA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.39, C:0.20, G:0.21, T:0.21
Consensus pattern (47 bp):
GATAGTTTATCCATAAAATCCAAGAGAAGGGCTACCAAAACCAGGCT
Found at i:644204 original size:3 final size:3
Alignment explanation
Indices: 644196--644227 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
644186 GAAAAACATA
*
644196 AAT AAT AAT AAC AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
644228 AATTACGTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:653868 original size:6 final size:6
Alignment explanation
Indices: 653849--653886 Score: 58
Period size: 6 Copynumber: 6.2 Consensus size: 6
653839 AGAGAAAAGG
*
653849 GGCAAA AGCTAAA GGCAAA GGCAAA GGCAAA GGCAAA G
1 GGCAAA GGC-AAA GGCAAA GGCAAA GGCAAA GGCAAA G
653887 CGGGGGGTGT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
6 24 0.83
7 5 0.17
ACGTcount: A:0.50, C:0.16, G:0.32, T:0.03
Consensus pattern (6 bp):
GGCAAA
Found at i:656006 original size:22 final size:22
Alignment explanation
Indices: 655968--656035 Score: 120
Period size: 22 Copynumber: 3.1 Consensus size: 22
655958 CAGACATTAA
655968 TTCCTTTGAG-ACCTCCGAAGC
1 TTCCTTTGAGAACCTCCGAAGC
655989 TTCCTTTGAGAACCTCCGAAGC
1 TTCCTTTGAGAACCTCCGAAGC
*
656011 TTCCTTTGAGAACTTCCGAAGC
1 TTCCTTTGAGAACCTCCGAAGC
656033 TTC
1 TTC
656036 GAACCAGAAT
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
21 10 0.22
22 35 0.78
ACGTcount: A:0.21, C:0.31, G:0.18, T:0.31
Consensus pattern (22 bp):
TTCCTTTGAGAACCTCCGAAGC
Found at i:668782 original size:33 final size:32
Alignment explanation
Indices: 668737--668906 Score: 124
Period size: 29 Copynumber: 5.2 Consensus size: 32
668727 CTAATATGTA
*
668737 ATAATAATAAGTAAAATTCATTGCTTGAATTTT
1 ATAATAAGAAGTAAAATT-ATTGCTTGAATTTT
668770 ATAATTAA-AAGTAAAAGTTATTGCTTGAA--TT
1 ATAA-TAAGAAGTAAAA-TTATTGCTTGAATTTT
668801 AT-ATAAGAA-TAAAATTTATTGCTTGAATTATAT
1 ATAATAAGAAGTAAAA-TTATTGCTTGAATT-T-T
* *
668834 AATAAAAAGTAAAAATAAAAGTTATTGCTTGAA--TT
1 -ATAATAAG---AAGTAAAA-TTATTGCTTGAATTTT
* *
668869 AT-ATAAGAA-TGAAACTTATTGCTTGAATTAT
1 ATAATAAGAAGT-AAAATTATTGCTTGAATTTT
668900 ATAATAA
1 ATAATAA
668907 TAAGCAAAGG
Statistics
Matches: 114, Mismatches: 6, Indels: 35
0.74 0.04 0.23
Matches are distributed among these distances:
29 33 0.29
30 8 0.07
31 7 0.06
32 5 0.04
33 27 0.24
34 9 0.08
35 5 0.04
36 1 0.01
38 2 0.02
39 17 0.15
ACGTcount: A:0.47, C:0.04, G:0.11, T:0.38
Consensus pattern (32 bp):
ATAATAAGAAGTAAAATTATTGCTTGAATTTT
Found at i:668825 original size:62 final size:62
Alignment explanation
Indices: 668748--668904 Score: 206
Period size: 68 Copynumber: 2.4 Consensus size: 62
668738 TAATAATAAG
* *
668748 TAAAATTCATTGCTTGAATTTTATAATTAAAAGTAAAAGTTATTGCTTGAATTATATAAGAA
1 TAAAATTTATTGCTTGAATTTTATAATTAAAAATAAAAGTTATTGCTTGAATTATATAAGAA
*
668810 TAAAATTTATTGCTTGAATTATATAATAAAAAGTAAAAATAAAAGTTATTGCTTGAATTATATAA
1 TAAAATTTATTGCTTGAATT-T-T-AT---AATTAAAAATAAAAGTTATTGCTTGAATTATATAA
668875 GAA
60 GAA
* * *
668878 TGAAACTTATTGCTTGAATTATATAAT
1 TAAAATTTATTGCTTGAATTTTATAAT
668905 AATAAGCAAA
Statistics
Matches: 82, Mismatches: 7, Indels: 12
0.81 0.07 0.12
Matches are distributed among these distances:
62 21 0.26
63 1 0.01
64 1 0.01
65 4 0.05
66 1 0.01
68 54 0.66
ACGTcount: A:0.45, C:0.04, G:0.11, T:0.39
Consensus pattern (62 bp):
TAAAATTTATTGCTTGAATTTTATAATTAAAAATAAAAGTTATTGCTTGAATTATATAAGAA
Found at i:668856 original size:68 final size:68
Alignment explanation
Indices: 668775--668906 Score: 237
Period size: 68 Copynumber: 1.9 Consensus size: 68
668765 ATTTTATAAT
* *
668775 TAAAAGTAAAAGTTATTGCTTGAATTATATAAGAATAAAATTTATTGCTTGAATTATATAATAAA
1 TAAAAATAAAAGTTATTGCTTGAATTATATAAGAATAAAACTTATTGCTTGAATTATATAATAAA
668840 AAG
66 AAG
*
668843 TAAAAATAAAAGTTATTGCTTGAATTATATAAGAATGAAACTTATTGCTTGAATTATATAATAA
1 TAAAAATAAAAGTTATTGCTTGAATTATATAAGAATAAAACTTATTGCTTGAATTATATAATAA
668907 TAAGCAAAGG
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
68 61 1.00
ACGTcount: A:0.48, C:0.04, G:0.11, T:0.37
Consensus pattern (68 bp):
TAAAAATAAAAGTTATTGCTTGAATTATATAAGAATAAAACTTATTGCTTGAATTATATAATAAA
AAG
Found at i:688353 original size:30 final size:30
Alignment explanation
Indices: 688317--688375 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
688307 CCAACGAAGA
*
688317 TAGCTTGGAAAGTTTTTGCTAGATCAGCTT
1 TAGCTTGGAAAGCTTTTGCTAGATCAGCTT
688347 TAGCTTGGAAAGCTTTTGCTAGATCAGCT
1 TAGCTTGGAAAGCTTTTGCTAGATCAGCT
688376 CATATGCCAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.37
Consensus pattern (30 bp):
TAGCTTGGAAAGCTTTTGCTAGATCAGCTT
Found at i:696821 original size:18 final size:18
Alignment explanation
Indices: 696798--696841 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
696788 GGGGATCGTC
*
696798 TGGTGGAGAGTGGACT-GG
1 TGGTGGAGAGT-GAATAGG
*
696816 TGGTGGTGAGTGAATAGG
1 TGGTGGAGAGTGAATAGG
696834 TGGTGGAG
1 TGGTGGAG
696842 GAGAGAGTAC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 3 0.14
18 19 0.86
ACGTcount: A:0.18, C:0.02, G:0.55, T:0.25
Consensus pattern (18 bp):
TGGTGGAGAGTGAATAGG
Found at i:696897 original size:24 final size:24
Alignment explanation
Indices: 696870--696950 Score: 96
Period size: 24 Copynumber: 3.5 Consensus size: 24
696860 GTGGTGGTGG
*
696870 TGGTGGTGGTGGTAGAGAATAGAT
1 TGGTGGTGGTGGTAGAGAGTAGAT
* *
696894 TGGTGGTGGAGG-AGAGAGTACA-
1 TGGTGGTGGTGGTAGAGAGTAGAT
*
696916 -GGTGGTGGTGGTGGAGAGTAGAT
1 TGGTGGTGGTGGTAGAGAGTAGAT
*
696939 TGGTGGCGGTGG
1 TGGTGGTGGTGG
696951 GGAGTAGATG
Statistics
Matches: 47, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
21 10 0.21
22 8 0.17
23 8 0.17
24 21 0.45
ACGTcount: A:0.20, C:0.02, G:0.53, T:0.25
Consensus pattern (24 bp):
TGGTGGTGGTGGTAGAGAGTAGAT
Found at i:696902 original size:3 final size:3
Alignment explanation
Indices: 696853--696882 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
696843 AGAGAGTACA
696853 GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT
1 GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT
696883 AGAGAATAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.67, T:0.33
Consensus pattern (3 bp):
GGT
Found at i:696942 original size:21 final size:21
Alignment explanation
Indices: 696798--696974 Score: 89
Period size: 21 Copynumber: 8.4 Consensus size: 21
696788 GGGGATCGTC
* *
696798 TGGTGGAGAGTGGACTGGTGG
1 TGGTGGAGAGTAGATTGGTGG
* *
696819 TGGT-GAGTG-A-ATAGGTGG
1 TGGTGGAGAGTAGATTGGTGG
* **
696837 TGGAGGAGAG-AGTACAGGTGG
1 TGGTGGAGAGTAG-ATTGGTGG
* *
696858 TGGTGGTG-GT-G-GTGGTGG
1 TGGTGGAGAGTAGATTGGTGG
696876 TGGTGGTAGAGAATAGATTGGTGG
1 TGGTGG-AGAG--TAGATTGGTGG
* * *
696900 TGGAGGAGAGAGTACAGGTGGTGG
1 TGG-TG-GAGAGTAGA-TTGGTGG
696924 TGGTGGAGAGTAGATTGGTGG
1 TGGTGGAGAGTAGATTGGTGG
* * * *
696945 CGGTGGGGAGTAGATGGGAGG
1 TGGTGGAGAGTAGATTGGTGG
*
696966 CGGTGGAGA
1 TGGTGGAGA
696975 TTGACGCCTT
Statistics
Matches: 119, Mismatches: 24, Indels: 26
0.70 0.14 0.15
Matches are distributed among these distances:
18 20 0.17
19 6 0.05
20 7 0.06
21 48 0.40
22 9 0.08
23 5 0.04
24 18 0.15
25 5 0.04
26 1 0.01
ACGTcount: A:0.20, C:0.03, G:0.55, T:0.23
Consensus pattern (21 bp):
TGGTGGAGAGTAGATTGGTGG
Found at i:697090 original size:21 final size:21
Alignment explanation
Indices: 697066--697121 Score: 58
Period size: 21 Copynumber: 2.7 Consensus size: 21
697056 AGAGAGTACA
* *
697066 GGTGGTGGTGGAGAATATATT
1 GGTGGTGGTGGAGAATAGATG
* * *
697087 GGTGGCGGTGGGGAGTAGATG
1 GGTGGTGGTGGAGAATAGATG
*
697108 GGAGGTGGTGGAGA
1 GGTGGTGGTGGAGA
697122 TTGACGCCTT
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.20, C:0.02, G:0.55, T:0.23
Consensus pattern (21 bp):
GGTGGTGGTGGAGAATAGATG
Found at i:697196 original size:147 final size:148
Alignment explanation
Indices: 696892--697160 Score: 423
Period size: 147 Copynumber: 1.8 Consensus size: 148
696882 TAGAGAATAG
** *
696892 ATTGGTGGTGGAGGAGAGAGTACAGGTGGTGGTGGTGGAGAGTAGATTGGTGGCGGTGGGGAGTA
1 ATTGGTGGCAGAGGAGAGAGTACA-G-GGTGGTGGTGGAGAATAGATTGGTGGCGGTGGGGAGTA
*
696957 GATGGGAGGCGGTGGAGATTGACGCCTTACAATAATGGGTGATTCTCTATGGGGATCATCTAGTG
64 GATGGGAGGCGGTGGAGATTGACGCCTTACAATAATGGGTGATTCTCGATGGGGATCATCTAGTG
*
697022 GTGGCGGCGGTGGTGAATGA
129 GTGGCGGCGGTGGTGAAGGA
** *
697042 ACAGGTGGCAGAGGAGAGAGTACA-GGTGGTGGTGGAGAATATATTGGTGGCGGTGGGGAGTAGA
1 ATTGGTGGCAGAGGAGAGAGTACAGGGTGGTGGTGGAGAATAGATTGGTGGCGGTGGGGAGTAGA
* *
697106 TGGGAGGTGGTGGAGATTGACGCCTTATAATAATGGGTGATTCTCGATGGGGATC
66 TGGGAGGCGGTGGAGATTGACGCCTTACAATAATGGGTGATTCTCGATGGGGATC
697161 GTCTGGTGTC
Statistics
Matches: 110, Mismatches: 9, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
147 90 0.82
150 20 0.18
ACGTcount: A:0.22, C:0.09, G:0.45, T:0.24
Consensus pattern (148 bp):
ATTGGTGGCAGAGGAGAGAGTACAGGGTGGTGGTGGAGAATAGATTGGTGGCGGTGGGGAGTAGA
TGGGAGGCGGTGGAGATTGACGCCTTACAATAATGGGTGATTCTCGATGGGGATCATCTAGTGGT
GGCGGCGGTGGTGAAGGA
Found at i:697216 original size:21 final size:21
Alignment explanation
Indices: 697192--697243 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 21
697182 TAGAGGCTTT
*
697192 GGTGGTGGTG-AGTGTACTGGA
1 GGTGGTGGTGAACT-TACTGGA
* * *
697213 GGTGATGGAGAACTTACTGGT
1 GGTGGTGGTGAACTTACTGGA
697234 GGTGGTGGTG
1 GGTGGTGGTG
697244 GAGAACAGCT
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
21 22 0.92
22 2 0.08
ACGTcount: A:0.15, C:0.06, G:0.50, T:0.29
Consensus pattern (21 bp):
GGTGGTGGTGAACTTACTGGA
Found at i:697492 original size:345 final size:346
Alignment explanation
Indices: 697089--697732 Score: 859
Period size: 348 Copynumber: 1.9 Consensus size: 346
697079 AATATATTGG
* * * * *
697089 TGGCGGTGGGGAGTAGATGGGAGGTGGTGGAGATTGACGCCTTATAATAATGGGTGATTCTCGAT
1 TGGCGGTGGGGAGTAAATGGAAGGTGGTGGAGATGGACGCCTTACAATAATAGGTGATTCTCGAT
* * * * * *
697154 GGGGATCGTCTGGTGTCGGTGCTGGGGCTAGAGGCTTTGGT-GGTGGTGAGTGTACTGGAGGTGA
66 GAGGATCATCTGGTGTCGGTGCCGGGGCTAGAGGCGTTGGTGGGT-GCGAGTGAACTGGAGGTGA
* * * *
697218 TGGAGAAC-TTACTGGTGGTGGTGGTGGAGAACAG-CTTGGTGGCGATGGCGAGTGGA-TGAGAG
130 CGGAGAACTTTACTGGTGGTGGTGGTGAAGAACAGAC-CGGTGGCGATGGAGAGTGGACTG-GAG
* * *
697280 GCGTTGGAGATTGTA-CTGGAGGAAGTGGGGATGGATGCCATATAATAGGTGATTC-CTTATGGG
193 GCGGTGGAGATTGTATC-GGAAGAAGTGGGGATCGATGCCATATAATAGGTGATTCTC-TATGGG
* * **
697343 GATCTTCTAATGTTGGTGTCGGGGTTAGAGGCTTTGGAGGTGATGAGTGAACTGGAGGTGGCGGA
256 GATCTTCTAATGTTGATGCCGGGGCCAGAGGCTTTGGAGGTGATGAGTGAACTGGAGGTGGCGGA
697408 GAACTTATTGGTGGTGGATAGACTGA
321 GAACTTATTGGTGGTGGATAGACTGA
* *
697434 TGGCGGTGGGGAGTAAATGGAAGGTGGTGGAGATGGATGCCTTACAATAATAGGTGATTCTCTAT
1 TGGCGGTGGGGAGTAAATGGAAGGTGGTGGAGATGGACGCCTTACAATAATAGGTGATTCTCGAT
* *
697499 GAGGATCATCTGGTGTTGGTGCCGGGGCTAGAGGCGTTGGTGGGTGCGAGTGAACTGGAGGTGGC
66 GAGGATCATCTGGTGTCGGTGCCGGGGCTAGAGGCGTTGGTGGGTGCGAGTGAACTGGAGGTGAC
* * *
697564 GGAGAACTTATTAGTGGTGGTGGTGGTGAAGAATAGACCGGTGGCGGTGGAGAGTGGACTGGAGG
131 GGAGAAC-T-TTACTGGTGGTGGTGGTGAAGAACAGACCGGTGGCGATGGAGAGTGGACTGGAGG
* * * *
697629 TGGTGGTGATTGTATCGGAAGAGGTGGGGATCGATGCCATATAATGGGTGATTCTCTATGGGGAT
194 CGGTGGAGATTGTATCGGAAGAAGTGGGGATCGATGCCATATAATAGGTGATTCTCTATGGGGAT
** *
697694 CTTCTGGTGTTGATGCCGGGGCCAGAGGCTTTGGTGGTG
259 CTTCTAATGTTGATGCCGGGGCCAGAGGCTTTGGAGGTG
697733 TTGGAGACTG
Statistics
Matches: 255, Mismatches: 36, Indels: 13
0.84 0.12 0.04
Matches are distributed among these distances:
345 117 0.46
346 3 0.01
348 130 0.51
349 5 0.02
ACGTcount: A:0.20, C:0.10, G:0.43, T:0.27
Consensus pattern (346 bp):
TGGCGGTGGGGAGTAAATGGAAGGTGGTGGAGATGGACGCCTTACAATAATAGGTGATTCTCGAT
GAGGATCATCTGGTGTCGGTGCCGGGGCTAGAGGCGTTGGTGGGTGCGAGTGAACTGGAGGTGAC
GGAGAACTTTACTGGTGGTGGTGGTGAAGAACAGACCGGTGGCGATGGAGAGTGGACTGGAGGCG
GTGGAGATTGTATCGGAAGAAGTGGGGATCGATGCCATATAATAGGTGATTCTCTATGGGGATCT
TCTAATGTTGATGCCGGGGCCAGAGGCTTTGGAGGTGATGAGTGAACTGGAGGTGGCGGAGAACT
TATTGGTGGTGGATAGACTGA
Done.