Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19593398
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 1222752 characters in sequence are not A, C, G, or T
File 13 of 50
Found at i:6966893 original size:3 final size:3
Alignment explanation
Indices: 6966866--6966924 Score: 61
Period size: 3 Copynumber: 20.0 Consensus size: 3
6966856 AGGTAATGTC
* *
6966866 ATT A-T ATT TTT ATT -TT ATT ATTT ATT ATT ATTT ATT ATT CTT -TT
1 ATT ATT ATT ATT ATT ATT ATT A-TT ATT ATT A-TT ATT ATT ATT ATT
6966910 ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT
6966925 TATGTTTTAT
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
2 6 0.12
3 36 0.75
4 6 0.12
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (3 bp):
ATT
Found at i:6966895 original size:10 final size:10
Alignment explanation
Indices: 6966880--6966927 Score: 66
Period size: 10 Copynumber: 5.1 Consensus size: 10
6966870 TATTTTTATT
6966880 TTATTATTTA
1 TTATTATTTA
6966890 TTATTATTTA
1 TTATTATTTA
*
6966900 TTATT-CTT-
1 TTATTATTTA
6966908 TTATTA-TTA
1 TTATTATTTA
6966917 TTATTATTTA
1 TTATTATTTA
6966927 T
1 T
6966928 GTTTTATGTA
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
8 7 0.21
9 8 0.24
10 19 0.56
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (10 bp):
TTATTATTTA
Found at i:6966901 original size:17 final size:18
Alignment explanation
Indices: 6966870--6966927 Score: 73
Period size: 18 Copynumber: 3.2 Consensus size: 18
6966860 AATGTCATTA
*
6966870 TATTTTTATTTTATTATT
1 TATTATTATTTTATTATT
6966888 TATTATTA-TTTATTATT
1 TATTATTATTTTATTATT
*
6966905 CTTTTATTATTATTATTATT
1 -TATTATTATT-TTATTATT
6966925 TAT
1 TAT
6966928 GTTTTATGTA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
17 9 0.26
18 14 0.41
19 3 0.09
20 8 0.24
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (18 bp):
TATTATTATTTTATTATT
Found at i:6966914 original size:24 final size:24
Alignment explanation
Indices: 6966866--6966949 Score: 77
Period size: 24 Copynumber: 3.5 Consensus size: 24
6966856 AGGTAATGTC
6966866 ATTA-TATTTTTATTTTATTATTT
1 ATTATTATTTTTATTTTATTATTT
6966889 ATTATTATTTATTATTCTT-TTA-TT
1 ATTATTATTT-TTATT-TTATTATTT
* *
6966913 ATTATTATTATTTATGTT-TTATGT
1 ATTATTATT-TTTATTTTATTATTT
6966937 ATATATATATTTT
1 AT-TAT-TATTTT
6966950 AAGAGTTATT
Statistics
Matches: 52, Mismatches: 2, Indels: 12
0.79 0.03 0.18
Matches are distributed among these distances:
23 9 0.17
24 23 0.44
25 14 0.27
26 6 0.12
ACGTcount: A:0.27, C:0.01, G:0.02, T:0.69
Consensus pattern (24 bp):
ATTATTATTTTTATTTTATTATTT
Found at i:6966934 original size:17 final size:15
Alignment explanation
Indices: 6966870--6966934 Score: 60
Period size: 17 Copynumber: 4.0 Consensus size: 15
6966860 AATGTCATTA
6966870 TATTTTTA-TTTTAT
1 TATTTTTATTTTTAT
6966884 TATTTATTATTATTTAT
1 TATTT-TTATT-TTTAT
*
6966901 TATTCTTTTATTATTAT
1 TA-T-TTTTATTTTTAT
6966918 TATTATTTATGTTTTAT
1 TATT-TTTAT-TTTTAT
6966935 GTATATATAT
Statistics
Matches: 42, Mismatches: 2, Indels: 11
0.76 0.04 0.20
Matches are distributed among these distances:
14 5 0.12
15 4 0.10
16 7 0.17
17 18 0.43
18 6 0.14
19 2 0.05
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.72
Consensus pattern (15 bp):
TATTTTTATTTTTAT
Found at i:6968567 original size:40 final size:40
Alignment explanation
Indices: 6968523--6968604 Score: 137
Period size: 40 Copynumber: 2.0 Consensus size: 40
6968513 CTTTTCAAAG
* * *
6968523 AAGTAAAATAATTATATTATGCATTTTATAAATTTTACCT
1 AAGTAAAATAAATACATCATGCATTTTATAAATTTTACCT
6968563 AAGTAAAATAAATACATCATGCATTTTATAAATTTTACCT
1 AAGTAAAATAAATACATCATGCATTTTATAAATTTTACCT
6968603 AA
1 AA
6968605 CAAATAAGTA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.45, C:0.10, G:0.05, T:0.40
Consensus pattern (40 bp):
AAGTAAAATAAATACATCATGCATTTTATAAATTTTACCT
Found at i:6969340 original size:15 final size:15
Alignment explanation
Indices: 6969320--6969349 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
6969310 AATAATATCT
6969320 AATATTAATTAATTA
1 AATATTAATTAATTA
6969335 AATATTAATTAATTA
1 AATATTAATTAATTA
6969350 TTCATAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
AATATTAATTAATTA
Found at i:6971187 original size:5 final size:5
Alignment explanation
Indices: 6971166--6971199 Score: 50
Period size: 5 Copynumber: 6.6 Consensus size: 5
6971156 AATACAACTT
*
6971166 TTTTA TTTGTT TTTTA TTTTA TTTTA TTTTA TTT
1 TTTTA TTT-TA TTTTA TTTTA TTTTA TTTTA TTT
6971200 GAAGAGCACA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
5 22 0.85
6 4 0.15
ACGTcount: A:0.15, C:0.00, G:0.03, T:0.82
Consensus pattern (5 bp):
TTTTA
Found at i:6979360 original size:18 final size:18
Alignment explanation
Indices: 6979337--6979375 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
6979327 ACACGATTAA
*
6979337 TAACACATTTAACATGAT
1 TAACACATTTAACACGAT
*
6979355 TAACACGTTTAACACGAT
1 TAACACATTTAACACGAT
6979373 TAA
1 TAA
6979376 ATAAAAATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.44, C:0.18, G:0.08, T:0.31
Consensus pattern (18 bp):
TAACACATTTAACACGAT
Found at i:7004309 original size:20 final size:21
Alignment explanation
Indices: 7004271--7004309 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
7004261 CCTGCATAAC
*
7004271 AAGCAATGAAACAACATTATA
1 AAGCAATAAAACAACATTATA
7004292 AAGCAATAAAAC-ACATTA
1 AAGCAATAAAACAACATTA
7004310 CCGCTCCTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.59, C:0.15, G:0.08, T:0.18
Consensus pattern (21 bp):
AAGCAATAAAACAACATTATA
Found at i:7008498 original size:18 final size:18
Alignment explanation
Indices: 7008472--7008514 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
7008462 GGGGAATTGA
* * *
7008472 TTGAGAAATGAATTTTTT
1 TTGAAAAATGAATATATT
*
7008490 TTGAAAAATTAATATATT
1 TTGAAAAATGAATATATT
7008508 TTGAAAA
1 TTGAAAA
7008515 GAAGAAAAGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.44, C:0.00, G:0.12, T:0.44
Consensus pattern (18 bp):
TTGAAAAATGAATATATT
Found at i:7009277 original size:19 final size:19
Alignment explanation
Indices: 7009224--7009279 Score: 62
Period size: 19 Copynumber: 3.0 Consensus size: 19
7009214 ATAATATTTA
*
7009224 AAATTTTTAAATTTTT-TT
1 AAATTTTTATATTTTTATT
* *
7009242 TATTTTTTAT-TATTTTATT
1 AAATTTTTATAT-TTTTATT
7009261 AAATTTTTATATTTTTATT
1 AAATTTTTATATTTTTATT
7009280 TTAAATTAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 5
0.75 0.12 0.12
Matches are distributed among these distances:
17 1 0.03
18 11 0.37
19 17 0.57
20 1 0.03
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (19 bp):
AAATTTTTATATTTTTATT
Found at i:7009287 original size:26 final size:26
Alignment explanation
Indices: 7009238--7009289 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
7009228 TTTTAAATTT
**
7009238 TTTTTATTTTTTATTATTTTATTAAA
1 TTTTTATTTTTTATTATTAAATTAAA
7009264 TTTTTATATTTTTATT-TTAAATTAAA
1 TTTTTAT-TTTTTATTATTAAATTAAA
7009290 AAAATATTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 15 0.65
27 8 0.35
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (26 bp):
TTTTTATTTTTTATTATTAAATTAAA
Found at i:7009466 original size:22 final size:24
Alignment explanation
Indices: 7009438--7009497 Score: 74
Period size: 22 Copynumber: 2.6 Consensus size: 24
7009428 ATATGACTTA
7009438 AATAATAATAATATT-TTTAA-TT
1 AATAATAATAATATTATTTAATTT
7009460 AATAATAATTAATTATTATTTAATTT
1 AATAATAA-TAA-TATTATTTAATTT
7009486 AA-AATAA-AATAT
1 AATAATAATAATAT
7009498 AATAAATAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
22 11 0.32
23 5 0.15
24 4 0.12
25 10 0.29
26 4 0.12
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (24 bp):
AATAATAATAATATTATTTAATTT
Found at i:7014807 original size:2 final size:2
Alignment explanation
Indices: 7014800--7014840 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
7014790 TTATAAAATC
7014800 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7014841 TTGTGGAGGA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7015158 original size:35 final size:34
Alignment explanation
Indices: 7015112--7015177 Score: 89
Period size: 35 Copynumber: 1.9 Consensus size: 34
7015102 CTCAACTTTA
* *
7015112 ATTTTTTTTTAT-TTTTTCTTTCAATTTATATTATT
1 ATTTTTATTTATATATTT-TTTC-ATTTATATTATT
7015147 ATTTTTATTTATATATTTTTTCATTTATATT
1 ATTTTTATTTATATATTTTTTCATTTATATT
7015178 CTATTTGCTC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
34 9 0.32
35 15 0.54
36 4 0.14
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.73
Consensus pattern (34 bp):
ATTTTTATTTATATATTTTTTCATTTATATTATT
Found at i:7015163 original size:14 final size:15
Alignment explanation
Indices: 7015136--7015176 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
7015126 TTTCTTTCAA
7015136 TTTATATTAT-TA-TT
1 TTTAT-TTATATATTT
7015150 TTTATTTATATATTT
1 TTTATTTATATATTT
7015165 TTTCATTTATAT
1 TTT-ATTTATAT
7015177 TCTATTTGCT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 4 0.17
14 7 0.29
15 5 0.21
16 8 0.33
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (15 bp):
TTTATTTATATATTT
Found at i:7016444 original size:31 final size:32
Alignment explanation
Indices: 7016406--7016465 Score: 104
Period size: 31 Copynumber: 1.9 Consensus size: 32
7016396 GAAATCAAAA
*
7016406 AGTATTGCATAATGTGC-AAAACAAAATGCAT
1 AGTATTGCATAATGTACAAAAACAAAATGCAT
7016437 AGTATTGCATAATGTACAAAAACAAAATG
1 AGTATTGCATAATGTACAAAAACAAAATG
7016466 GGCGTTGCCT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
31 16 0.59
32 11 0.41
ACGTcount: A:0.48, C:0.12, G:0.15, T:0.25
Consensus pattern (32 bp):
AGTATTGCATAATGTACAAAAACAAAATGCAT
Found at i:7018489 original size:124 final size:124
Alignment explanation
Indices: 7018267--7018517 Score: 486
Period size: 124 Copynumber: 2.0 Consensus size: 124
7018257 ACAATAAAAA
7018267 CTCACAGAACCTTAGCAATGAAATAGATAGAATCAAGAAAGAGAATGATAGCATGCACATTGAAC
1 CTCACAGAACCTTAGCAATGAAATAGATAGAATCAAGAAAGAGAATGATAGCATGCACATTGAAC
7018332 TCAGGTACATATACTTTTCCAGCTTTGTTAATTTCTTTGGTTTCC-TCTCTCTCTCTCT
66 TCAGGTACATATACTTTTCCAGCTTTGTTAATTTCTTTGGTTTCCTTCTCTCTCTCTCT
7018390 CTNCACAGAACCTTAGCAATGAAATAGATAGAATCAAGAAAGAGAATGATAGCATGCACATTGAA
1 CT-CACAGAACCTTAGCAATGAAATAGATAGAATCAAGAAAGAGAATGATAGCATGCACATTGAA
7018455 CTCAGGTACATATACTTTTCCAGCTTTGTTAATTTCTTTGGTTTCCTTCTCTCTCTCTCT
65 CTCAGGTACATATACTTTTCCAGCTTTGTTAATTTCTTTGGTTTCCTTCTCTCTCTCTCT
7018515 CTC
1 CTC
7018518 TTTCTCTCTC
Statistics
Matches: 126, Mismatches: 0, Indels: 3
0.98 0.00 0.02
Matches are distributed among these distances:
123 2 0.02
124 109 0.87
125 15 0.12
ACGTcount: A:0.30, C:0.22, G:0.14, T:0.33
Consensus pattern (124 bp):
CTCACAGAACCTTAGCAATGAAATAGATAGAATCAAGAAAGAGAATGATAGCATGCACATTGAAC
TCAGGTACATATACTTTTCCAGCTTTGTTAATTTCTTTGGTTTCCTTCTCTCTCTCTCT
Found at i:7018509 original size:2 final size:2
Alignment explanation
Indices: 7018502--7018535 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
7018492 TTGGTTTCCT
*
7018502 TC TC TC TC TC TC TC TC TT TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
7018536 GGTCTTATGT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (2 bp):
TC
Found at i:7021712 original size:15 final size:14
Alignment explanation
Indices: 7021681--7021714 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
7021671 TATTTAATTT
*
7021681 AAAATAAAAATATA
1 AAAATAAAAAAATA
7021695 AAAATAAAATAAATA
1 AAAATAAAA-AAATA
7021710 AAAAT
1 AAAAT
7021715 TTATTTAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (14 bp):
AAAATAAAAAAATA
Found at i:7021726 original size:20 final size:20
Alignment explanation
Indices: 7021701--7021745 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
7021691 TATAAAAATA
7021701 AAATAA-ATAAAAATTTATTT
1 AAATAATATAAAAATTT-TTT
* *
7021721 AAATAATTTAAATATTTTTT
1 AAATAATATAAAAATTTTTT
7021741 AAATA
1 AAATA
7021746 TTATGTTCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 14 0.64
21 8 0.36
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (20 bp):
AAATAATATAAAAATTTTTT
Found at i:7023270 original size:84 final size:84
Alignment explanation
Indices: 7023182--7023408 Score: 278
Period size: 84 Copynumber: 2.7 Consensus size: 84
7023172 TTCAAAGGAA
* * *
7023182 TTGATGGGTGAAAGGAACAGG-GATAGTGCAGTTTTCTCAAATGA-ACATCTGGGTGAGAATGTG
1 TTGATGGGTGAAAGG-ACAGGTGATAGTACAGTTTGCTCAAATGAGA-ATCAGGGTGAGAATGTG
7023245 GATGGTTCTTTTTCAGATGTC
64 GATGGTTCTTTTTCAGATGTC
* *** **
7023266 TTGATGGGTGATAGGTGTGGTGATAGTACAGTTTGCTTGAATGAGAATCAGGGTGAGAATGTGGA
1 TTGATGGGTGAAAGGACAGGTGATAGTACAGTTTGCTCAAATGAGAATCAGGGTGAGAATGTGGA
7023331 TGGTTCTTTTTCAGATGTC
66 TGGTTCTTTTTCAGATGTC
* *** * * *
7023350 TTGATGGGTGATAGGTGTGGTGATAGTACAGTTTCCTCCAATGAGGATCAGGGTGAGAA
1 TTGATGGGTGAAAGGACAGGTGATAGTACAGTTTGCTCAAATGAGAATCAGGGTGAGAA
7023409 CGTAGATTGT
Statistics
Matches: 128, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
83 2 0.02
84 125 0.98
85 1 0.01
ACGTcount: A:0.25, C:0.09, G:0.33, T:0.33
Consensus pattern (84 bp):
TTGATGGGTGAAAGGACAGGTGATAGTACAGTTTGCTCAAATGAGAATCAGGGTGAGAATGTGGA
TGGTTCTTTTTCAGATGTC
Found at i:7023438 original size:84 final size:84
Alignment explanation
Indices: 7023266--7023438 Score: 204
Period size: 84 Copynumber: 2.1 Consensus size: 84
7023256 TTCAGATGTC
* ** * *
7023266 TTGATGGGTGATAGGTGTGGTGATAGTACAGTTTGCTTGAATGAGAATCAGGGTGAGAATGTGGA
1 TTGATGGGTGATAGGTGTGGTGATAGTACAGTTTCCTCCAATGAGAATCAGGGTGAGAACGTAGA
* ** * * **
7023331 TGGTTCTTTTTCAGATGTC
66 TGGTGCTGCTCCAGAGGAA
*
7023350 TTGATGGGTGATAGGTGTGGTGATAGTACAGTTTCCTCCAATGAGGATCAGGGTGAGAACGTAGA
1 TTGATGGGTGATAGGTGTGGTGATAGTACAGTTTCCTCCAATGAGAATCAGGGTGAGAACGTAGA
*
7023415 TTGTGCTGGCTCCA-AGGAA
66 TGGTGCT-GCTCCAGAGGAA
7023434 TTGAT
1 TTGAT
7023439 TAGTTATAAG
Statistics
Matches: 74, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
84 71 0.96
85 3 0.04
ACGTcount: A:0.24, C:0.10, G:0.34, T:0.32
Consensus pattern (84 bp):
TTGATGGGTGATAGGTGTGGTGATAGTACAGTTTCCTCCAATGAGAATCAGGGTGAGAACGTAGA
TGGTGCTGCTCCAGAGGAA
Found at i:7042828 original size:25 final size:23
Alignment explanation
Indices: 7042781--7042842 Score: 65
Period size: 25 Copynumber: 2.7 Consensus size: 23
7042771 TAAATAACAT
*
7042781 TTTAACTAATAATAA-TTAATTAA
1 TTTAA-TAATAAAAATTTAATTAA
*
7042804 TCATTAATAATAAAAATTTATTTAA
1 T--TTAATAATAAAAATTTAATTAA
7042829 TTTAA-AATAAAAAT
1 TTTAATAATAAAAAT
7042843 ATAAGTATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
22 9 0.26
23 5 0.15
24 8 0.24
25 12 0.35
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (23 bp):
TTTAATAATAAAAATTTAATTAA
Found at i:7051372 original size:30 final size:32
Alignment explanation
Indices: 7051311--7051375 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 32
7051301 ATTTCTCTTC
*
7051311 TATAAGGCCTCTTTTAGCATTTTAAAAAAAAA
1 TATAAGACCTCTTTTAGCATTTTAAAAAAAAA
*
7051343 TATAAGACCTCTTTTA-CATTTAAATAAAAAAA
1 TATAAGACCTCTTTTAGCATTTTAA-AAAAAAA
7051375 T
1 T
7051376 TACATGAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 7 0.23
32 23 0.77
ACGTcount: A:0.46, C:0.12, G:0.06, T:0.35
Consensus pattern (32 bp):
TATAAGACCTCTTTTAGCATTTTAAAAAAAAA
Found at i:7056497 original size:24 final size:24
Alignment explanation
Indices: 7056465--7056512 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
7056455 TGTTATACAG
7056465 ACCATGAAAAGTTACAAAATTGTA
1 ACCATGAAAAGTTACAAAATTGTA
7056489 ACCATGAAAAGTTACAAAATTGTA
1 ACCATGAAAAGTTACAAAATTGTA
7056513 CTAGCCTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.50, C:0.12, G:0.12, T:0.25
Consensus pattern (24 bp):
ACCATGAAAAGTTACAAAATTGTA
Found at i:7059294 original size:20 final size:17
Alignment explanation
Indices: 7059263--7059304 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
7059253 TTTATAATAT
7059263 TAATAATTATATTATAAA
1 TAATAATTATATT-TAAA
7059281 TAATATATTAATATTTAAA
1 TAATA-ATT-ATATTTAAA
7059300 -AATAA
1 TAATAA
7059305 AATAAAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
17 1 0.05
18 9 0.41
19 7 0.32
20 5 0.23
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (17 bp):
TAATAATTATATTTAAA
Found at i:7059310 original size:11 final size:11
Alignment explanation
Indices: 7059296--7059334 Score: 53
Period size: 10 Copynumber: 3.5 Consensus size: 11
7059286 TATTAATATT
7059296 TAAAAATAAAA
1 TAAAAATAAAA
7059307 TAAAAAT-AAA
1 TAAAAATAAAA
7059317 TAAAAATATATAA
1 TAAAAATA-A-AA
7059330 TAAAA
1 TAAAA
7059335 GATATTTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
10 10 0.40
11 7 0.28
12 1 0.04
13 7 0.28
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (11 bp):
TAAAAATAAAA
Found at i:7059314 original size:21 final size:23
Alignment explanation
Indices: 7059290--7059341 Score: 63
Period size: 21 Copynumber: 2.3 Consensus size: 23
7059280 ATAATATATT
7059290 AATATTTAAAAATA-A-AATAAA
1 AATATTTAAAAATATATAATAAA
**
7059311 AATAAATAAAAATATATAATAAA
1 AATATTTAAAAATATATAATAAA
7059334 AGATATTT
1 A-ATATTT
7059342 TTATTTTTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
21 12 0.50
22 1 0.04
23 7 0.29
24 4 0.17
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (23 bp):
AATATTTAAAAATATATAATAAA
Found at i:7059938 original size:7 final size:7
Alignment explanation
Indices: 7059903--7059930 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
7059893 CCTTCTTTCG
7059903 CCTCCCC
1 CCTCCCC
7059910 CCTCCCC
1 CCTCCCC
7059917 CCTCCCC
1 CCTCCCC
7059924 CCTCCCC
1 CCTCCCC
7059931 TTCCCCCTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.00, C:0.86, G:0.00, T:0.14
Consensus pattern (7 bp):
CCTCCCC
Found at i:7068172 original size:37 final size:37
Alignment explanation
Indices: 7068115--7068188 Score: 130
Period size: 37 Copynumber: 2.0 Consensus size: 37
7068105 TTCTGATCAG
7068115 AACCTAAAGTCGAAGCTGATGTTGATGTCCTTTTTCT
1 AACCTAAAGTCGAAGCTGATGTTGATGTCCTTTTTCT
* *
7068152 AACCTAAAGTCGGAGTTGATGTTGATGTCCTTTTTCT
1 AACCTAAAGTCGAAGCTGATGTTGATGTCCTTTTTCT
7068189 TTAAAGTTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.23, C:0.18, G:0.20, T:0.39
Consensus pattern (37 bp):
AACCTAAAGTCGAAGCTGATGTTGATGTCCTTTTTCT
Found at i:7072634 original size:29 final size:30
Alignment explanation
Indices: 7072573--7072639 Score: 82
Period size: 30 Copynumber: 2.3 Consensus size: 30
7072563 AGTTTTTATC
* *
7072573 CAAAAATCAACAAAATTGAAACTATAGTAG
1 CAAAATTCAACAAAATTGAAACTACAGTAG
* * *
7072603 CAAAATTCAATAAAATTTAAA-TACAGTGG
1 CAAAATTCAACAAAATTGAAACTACAGTAG
7072632 CAAAATTC
1 CAAAATTC
7072640 CTTAAGAGTC
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 14 0.44
30 18 0.56
ACGTcount: A:0.54, C:0.13, G:0.09, T:0.24
Consensus pattern (30 bp):
CAAAATTCAACAAAATTGAAACTACAGTAG
Found at i:7074865 original size:66 final size:66
Alignment explanation
Indices: 7074748--7074873 Score: 162
Period size: 66 Copynumber: 1.9 Consensus size: 66
7074738 TTTCGTTGTC
* ** * * *
7074748 TCAGCCTTTGCTTTCCTCGAAAAACCACCCGAATTTTCTGGAACGTTAGCCTTTATCCTTCTCAA
1 TCAGCCTTTGCTTTCCTCGAAAAACCACCCAAATAGTCTGGAACCTCAGCCTTTACCCTTCTCAA
7074813 A
66 A
* * * *
7074814 TCAGTCTTTGCTTTCCTTGAAAACCCATCCAAATAGTCTGGAACCTCAGCCTTTACCCTT
1 TCAGCCTTTGCTTTCCTCGAAAAACCACCCAAATAGTCTGGAACCTCAGCCTTTACCCTT
7074874 TTTGAATTGC
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
66 50 1.00
ACGTcount: A:0.24, C:0.31, G:0.12, T:0.33
Consensus pattern (66 bp):
TCAGCCTTTGCTTTCCTCGAAAAACCACCCAAATAGTCTGGAACCTCAGCCTTTACCCTTCTCAA
A
Found at i:7076344 original size:31 final size:30
Alignment explanation
Indices: 7076280--7076340 Score: 81
Period size: 30 Copynumber: 2.0 Consensus size: 30
7076270 ATATATAACA
*
7076280 TAAGGACTAAATTGAATAAAATTGAGATGT
1 TAAGGACTAAATTGAATAAAATTGAAATGT
7076310 TAAGAGACTAAATTGAA-AAAATAT-AAATGT
1 TAAG-GACTAAATTGAATAAAAT-TGAAATGT
7076340 T
1 T
7076341 TAAGTAAATG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
30 15 0.54
31 13 0.46
ACGTcount: A:0.51, C:0.03, G:0.16, T:0.30
Consensus pattern (30 bp):
TAAGGACTAAATTGAATAAAATTGAAATGT
Found at i:7092269 original size:22 final size:22
Alignment explanation
Indices: 7092189--7092330 Score: 88
Period size: 22 Copynumber: 6.4 Consensus size: 22
7092179 ATAGTTTTGG
** * *
7092189 TAGTTTTTAAATATTACGTAAC
1 TAGTTTTTAAGCATTACGTGAT
* * * *
7092211 TGGTTTTTGAGTATTACGTGAC
1 TAGTTTTTAAGCATTACGTGAT
*
7092233 TAGTTTTTAAGCATTACATGAT
1 TAGTTTTTAAGCATTACGTGAT
7092255 TAGTTTTT-AGACATTACGTGAT
1 TAGTTTTTAAG-CATTACGTGAT
* ** ** * *
7092277 TGGTTGATGGGCATTATGTAAT
1 TAGTTTTTAAGCATTACGTGAT
* * *
7092299 TAGTTTGTAAGACATTGCGTGAC
1 TAGTTTTTAAG-CATTACGTGAT
7092322 TAGTTTTTA
1 TAGTTTTTA
7092331 GATATTGTGT
Statistics
Matches: 91, Mismatches: 26, Indels: 5
0.75 0.21 0.04
Matches are distributed among these distances:
21 2 0.02
22 73 0.80
23 16 0.18
ACGTcount: A:0.27, C:0.08, G:0.20, T:0.44
Consensus pattern (22 bp):
TAGTTTTTAAGCATTACGTGAT
Found at i:7092325 original size:23 final size:22
Alignment explanation
Indices: 7092299--7092344 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
7092289 ATTATGTAAT
7092299 TAGTTTGTAAGACATTGCGTGAC
1 TAGTTT-TAAGACATTGCGTGAC
* * *
7092322 TAGTTTTTAGATATTGTGTGAC
1 TAGTTTTAAGACATTGCGTGAC
7092344 T
1 T
7092345 TAAGCATTGC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 14 0.70
23 6 0.30
ACGTcount: A:0.24, C:0.09, G:0.24, T:0.43
Consensus pattern (22 bp):
TAGTTTTAAGACATTGCGTGAC
Found at i:7094649 original size:3 final size:3
Alignment explanation
Indices: 7094643--7094680 Score: 58
Period size: 3 Copynumber: 12.7 Consensus size: 3
7094633 ATCACCACCA
* *
7094643 CCT CCT CCT CCT CCT CCT CCT CCT CCG CCT CCG CCT CC
1 CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CC
7094681 GCCAGCGGTT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.00, C:0.68, G:0.05, T:0.26
Consensus pattern (3 bp):
CCT
Found at i:7108690 original size:78 final size:79
Alignment explanation
Indices: 7108510--7108719 Score: 278
Period size: 78 Copynumber: 2.6 Consensus size: 79
7108500 AAGATGTTAA
* * * * *
7108510 ATTTACATATTGGTACCATTATACTTTCATGTATAATAGGAATGCCACATGTCGCCCACTTATCA
1 ATTTACATATTAGCATCATTATACCTTAATGTATAATAGGAATGCCACATGT--CCCACTTATCA
* ** *
7108575 CGTGGACCTTGATAGT
64 CATAAACCTTAATAGT
*
7108591 ATTTACATATTGGCATCATTATACCTTAATGTATAATAGGAATGCCACATGT-CCACTTATCACA
1 ATTTACATATTAGCATCATTATACCTTAATGTATAATAGGAATGCCACATGTCCCACTTATCACA
*
7108655 TAAACCTTAATGGT
66 TAAACCTTAATAGT
* *
7108669 ATTTATATTTTAGCATCATTATACCTTAATGTATAATAGGAATGCCACATG
1 ATTTACATATTAGCATCATTATACCTTAATGTATAATAGGAATGCCACATG
7108720 CTCATGCCTT
Statistics
Matches: 117, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
78 69 0.59
81 48 0.41
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (79 bp):
ATTTACATATTAGCATCATTATACCTTAATGTATAATAGGAATGCCACATGTCCCACTTATCACA
TAAACCTTAATAGT
Found at i:7109686 original size:19 final size:19
Alignment explanation
Indices: 7109664--7109705 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
7109654 TTTTTCAAAA
7109664 ACACAACCCTTTCATTAAG
1 ACACAACCCTTTCATTAAG
* *
7109683 ACACCATCCTTTCATTAAG
1 ACACAACCCTTTCATTAAG
7109702 ACAC
1 ACAC
7109706 CATTTTGTCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.36, C:0.33, G:0.05, T:0.26
Consensus pattern (19 bp):
ACACAACCCTTTCATTAAG
Found at i:7109706 original size:19 final size:19
Alignment explanation
Indices: 7109671--7109708 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
7109661 AAAACACAAC
7109671 CCTTTCATTAAGACACCAT
1 CCTTTCATTAAGACACCAT
7109690 CCTTTCATTAAGACACCAT
1 CCTTTCATTAAGACACCAT
7109709 TTTGTCTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.32, G:0.05, T:0.32
Consensus pattern (19 bp):
CCTTTCATTAAGACACCAT
Found at i:7117272 original size:36 final size:35
Alignment explanation
Indices: 7117232--7117335 Score: 140
Period size: 36 Copynumber: 2.9 Consensus size: 35
7117222 CCTGCTCTGC
7117232 TATTTGAATATAGTATTTGTAGAGCATCTTGATGGG
1 TATTTGAAT-TAGTATTTGTAGAGCATCTTGATGGG
* *
7117268 TATTTGAATTTATTATTTGTAGAGCATCTCGA-GGG
1 TATTTGAA-TTAGTATTTGTAGAGCATCTTGATGGG
7117303 -ATGTCTGAATTAGTATTTGTAGAGCATCTTGAT
1 TAT-T-TGAATTAGTATTTGTAGAGCATCTTGAT
7117336 TTTTAAAGCT
Statistics
Matches: 60, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
34 2 0.03
35 25 0.42
36 32 0.53
37 1 0.02
ACGTcount: A:0.27, C:0.08, G:0.23, T:0.42
Consensus pattern (35 bp):
TATTTGAATTAGTATTTGTAGAGCATCTTGATGGG
Found at i:7119481 original size:42 final size:42
Alignment explanation
Indices: 7119403--7119576 Score: 161
Period size: 42 Copynumber: 4.0 Consensus size: 42
7119393 GTATCAACAA
* * **
7119403 AACTCAGCATACATCACT-TCACCACACCATCGATTCAAGTTT
1 AACTCAGCATACATCACTCT-ACCATAGCATTAATTCAAGTTT
* *
7119445 GACTCAGCATACATTACTCTACCATAGCATTAATTCAAGTTT
1 AACTCAGCATACATCACTCTACCATAGCATTAATTCAAGTTT
* *
7119487 AACTCAGCATACCAGCATACATTACCCTATCATAGCATTAATTCAAGTTT
1 AACTCAGCAT---A-CAT-C---ACTCTACCATAGCATTAATTCAAGTTT
* * *
7119537 AACTCAGCATGCATCACTTTACCATAGCATTAACTCAAGT
1 AACTCAGCATACATCACTCTACCATAGCATTAATTCAAGT
7119577 ATGTTGAGGA
Statistics
Matches: 108, Mismatches: 15, Indels: 18
0.77 0.11 0.13
Matches are distributed among these distances:
42 64 0.59
43 1 0.01
45 2 0.02
46 6 0.06
50 35 0.32
ACGTcount: A:0.34, C:0.28, G:0.09, T:0.29
Consensus pattern (42 bp):
AACTCAGCATACATCACTCTACCATAGCATTAATTCAAGTTT
Found at i:7119524 original size:50 final size:50
Alignment explanation
Indices: 7119449--7119546 Score: 178
Period size: 50 Copynumber: 2.0 Consensus size: 50
7119439 AAGTTTGACT
*
7119449 CAGCATACATTACTCTACCATAGCATTAATTCAAGTTTAACTCAGCATAC
1 CAGCATACATTACCCTACCATAGCATTAATTCAAGTTTAACTCAGCATAC
*
7119499 CAGCATACATTACCCTATCATAGCATTAATTCAAGTTTAACTCAGCAT
1 CAGCATACATTACCCTACCATAGCATTAATTCAAGTTTAACTCAGCAT
7119547 GCATCACTTT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 46 1.00
ACGTcount: A:0.36, C:0.26, G:0.08, T:0.31
Consensus pattern (50 bp):
CAGCATACATTACCCTACCATAGCATTAATTCAAGTTTAACTCAGCATAC
Found at i:7123807 original size:43 final size:43
Alignment explanation
Indices: 7123760--7123898 Score: 183
Period size: 43 Copynumber: 3.2 Consensus size: 43
7123750 CAAGCATAAC
*
7123760 GCTTGATATCCTTGATCTATAGTGATACAGTTCAAATCATTAT
1 GCTTGATATCCTTAATCTATAGTGATACAGTTCAAATCATTAT
* * * *
7123803 GCTTGATATCCTTAATCTGTAGTGCTAC-GCTTCCAACTC-TAAT
1 GCTTGATATCCTTAATCTATAGTGATACAG-TT-CAAATCATTAT
*
7123846 GCTTGATATCCTTAATCTATAGTGATACAGTTTAAATCATTAT
1 GCTTGATATCCTTAATCTATAGTGATACAGTTCAAATCATTAT
*
7123889 GCTTAATATC
1 GCTTGATATC
7123899 ATTGATCTGT
Statistics
Matches: 81, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
42 5 0.06
43 70 0.86
44 6 0.07
ACGTcount: A:0.29, C:0.19, G:0.13, T:0.40
Consensus pattern (43 bp):
GCTTGATATCCTTAATCTATAGTGATACAGTTCAAATCATTAT
Found at i:7123873 original size:86 final size:85
Alignment explanation
Indices: 7123749--7123948 Score: 276
Period size: 86 Copynumber: 2.3 Consensus size: 85
7123739 TGTTATGGTA
* * * *
7123749 CCAAGCATAACGCTTGATATCCTTGATCTATAGTGATACAGTTCAAATCATTATGCTTGATATCC
1 CCAAGCTTAATGCTTGATATCCTTGATCTATAGTGATACAGTTCAAATCATTATGCTTAATATCA
* *
7123814 TTAATCTGTAGTGCTACGCTT
66 TTAATCTGTAGCGCTA-GCTC
* *
7123835 CCAA-CTCTAATGCTTGATATCCTTAATCTATAGTGATACAGTTTAAATCATTATGCTTAATATC
1 CCAAGCT-TAATGCTTGATATCCTTGATCTATAGTGATACAGTTCAAATCATTATGCTTAATATC
* *
7123899 ATTGATCTGTGGCGCTAGCTC
65 ATTAATCTGTAGCGCTAGCTC
*
7123920 CCAAGCTTAATTCTTGATATCCTTGATCT
1 CCAAGCTTAATGCTTGATATCCTTGATCT
7123949 GGGGTATTAT
Statistics
Matches: 100, Mismatches: 12, Indels: 5
0.85 0.10 0.04
Matches are distributed among these distances:
85 28 0.28
86 72 0.72
ACGTcount: A:0.28, C:0.21, G:0.14, T:0.38
Consensus pattern (85 bp):
CCAAGCTTAATGCTTGATATCCTTGATCTATAGTGATACAGTTCAAATCATTATGCTTAATATCA
TTAATCTGTAGCGCTAGCTC
Found at i:7127321 original size:9 final size:9
Alignment explanation
Indices: 7127307--7127378 Score: 63
Period size: 9 Copynumber: 7.7 Consensus size: 9
7127297 TGTAGACACC
7127307 AAAAAATAA
1 AAAAAATAA
*
7127316 AAAAAATCA
1 AAAAAATAA
*
7127325 AAGAAATAA
1 AAAAAATAA
*
7127334 AACAAATAA
1 AAAAAATAA
7127343 TAATAAAATAA
1 -AA-AAAATAA
*
7127354 ATAAATATAA
1 A-AAAAATAA
* *
7127364 AATAATTAA
1 AAAAAATAA
7127373 AAAAAA
1 AAAAAA
7127379 AGAGGAATGG
Statistics
Matches: 49, Mismatches: 11, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
9 32 0.65
10 10 0.20
11 7 0.14
ACGTcount: A:0.78, C:0.03, G:0.01, T:0.18
Consensus pattern (9 bp):
AAAAAATAA
Found at i:7127363 original size:15 final size:16
Alignment explanation
Indices: 7127329--7127373 Score: 58
Period size: 15 Copynumber: 2.9 Consensus size: 16
7127319 AAATCAAAGA
*
7127329 AATAAAACAAAT-AAT
1 AATAAAATAAATAAAT
7127344 AATAAAATAAATAAAT
1 AATAAAATAAATAAAT
*
7127360 -ATAAAATAATTAAA
1 AATAAAATAAATAAA
7127374 AAAAAAGAGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
15 24 0.89
16 3 0.11
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.24
Consensus pattern (16 bp):
AATAAAATAAATAAAT
Found at i:7128484 original size:5 final size:5
Alignment explanation
Indices: 7128463--7128519 Score: 64
Period size: 5 Copynumber: 11.0 Consensus size: 5
7128453 TACTACAACT
7128463 AAATA AAA-A ATAATA AAATA AAATA AAATA AAATA TTAAAT- AAATA
1 AAATA AAATA A-AATA AAATA AAATA AAATA AAATA --AAATA AAATA
7128509 ATAATA AAATA
1 A-AATA AAATA
7128520 CCATGATATT
Statistics
Matches: 46, Mismatches: 0, Indels: 12
0.79 0.00 0.21
Matches are distributed among these distances:
4 6 0.13
5 29 0.63
6 7 0.15
7 4 0.09
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (5 bp):
AAATA
Found at i:7128506 original size:22 final size:22
Alignment explanation
Indices: 7128464--7128519 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 22
7128454 ACTACAACTA
7128464 AATAA-AAAATAATAAAATAAAAT
1 AATAATAAAAT-ATAAAAT-AAAT
*
7128487 AA-AATAAAATATTAAATAAAT
1 AATAATAAAATATAAAATAAAT
7128508 AATAATAAAATA
1 AATAATAAAATA
7128520 CCATGATATT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
21 6 0.20
22 17 0.57
23 7 0.23
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (22 bp):
AATAATAAAATATAAAATAAAT
Found at i:7128817 original size:23 final size:22
Alignment explanation
Indices: 7128757--7128818 Score: 65
Period size: 23 Copynumber: 2.8 Consensus size: 22
7128747 GTAAAGTATG
* *
7128757 AAAAAAAT-AATAATAAGAAAT
1 AAAAAAATGAACAATAAAAAAT
7128778 AAAAAAATGTAACAATAAAAAAT
1 AAAAAAATG-AACAATAAAAAAT
7128801 AAAATAAAATGAA-AATAA
1 -AAA-AAAATGAACAATAA
7128819 TAATTAAATA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
21 8 0.23
23 16 0.46
24 5 0.14
25 6 0.17
ACGTcount: A:0.76, C:0.02, G:0.05, T:0.18
Consensus pattern (22 bp):
AAAAAAATGAACAATAAAAAAT
Found at i:7128817 original size:39 final size:38
Alignment explanation
Indices: 7128713--7128818 Score: 94
Period size: 36 Copynumber: 2.8 Consensus size: 38
7128703 ATACTCAATA
* *
7128713 AAAATAATAAAT-AAATAACAATAGAAT-AAAAAATGT
1 AAAATAAAAAATAAAATAACAATAAAATAAAAAAATGT
* ** *
7128749 AAAGTATGAAA-AAAATAATAATAAGAAATAAAAAAATGT
1 AAAATAAAAAATAAAATAACAAT-A-AAATAAAAAAATGT
7128788 AACAATAAAAAATAAAATAA-AATGAAAATAA
1 AA-AATAAAAAATAAAATAACAAT-AAAATAA
7128819 TAATTAAATA
Statistics
Matches: 55, Mismatches: 9, Indels: 9
0.75 0.12 0.12
Matches are distributed among these distances:
36 17 0.31
37 1 0.02
38 3 0.05
39 17 0.31
40 10 0.18
41 7 0.13
ACGTcount: A:0.72, C:0.02, G:0.07, T:0.20
Consensus pattern (38 bp):
AAAATAAAAAATAAAATAACAATAAAATAAAAAAATGT
Found at i:7134143 original size:2 final size:2
Alignment explanation
Indices: 7134136--7134163 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
7134126 CCAAAATTAA
7134136 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7134164 CTATTATTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7134402 original size:31 final size:29
Alignment explanation
Indices: 7134354--7134431 Score: 84
Period size: 29 Copynumber: 2.6 Consensus size: 29
7134344 ACATTATGTG
* * *
7134354 TTAGTTATTATGGATATTCAATATATCTTAC
1 TTAGCTATTGTGGATATT--ATATATCGTAC
* **
7134385 TTAGCTATTGTGGATATTGTATATCGTGT
1 TTAGCTATTGTGGATATTATATATCGTAC
7134414 TTAGCTATTGTGGATATT
1 TTAGCTATTGTGGATATT
7134432 TTAAATAATT
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
29 25 0.61
31 16 0.39
ACGTcount: A:0.26, C:0.08, G:0.18, T:0.49
Consensus pattern (29 bp):
TTAGCTATTGTGGATATTATATATCGTAC
Found at i:7139588 original size:79 final size:79
Alignment explanation
Indices: 7139493--7139682 Score: 220
Period size: 79 Copynumber: 2.4 Consensus size: 79
7139483 ATTGAATAAC
* *
7139493 CAAATTTAGATTTTATCTCTAAATTATTTTAATTTATTTAAAAATAAATTAGATGATCAATAAGT
1 CAAATTTAAATATTATCTCTAAATTATTTTAATTTATTTAAAAATAAATTAGATGATCAATAAGT
7139558 AAATTTTAATTGAT
66 AAATTTTAATTGAT
* * * * * * * * * *
7139572 TAAATTTAAATATTATCTGTAAATTATCTTGATTTATTTAGAGATAACTTGGATGATTAATAGGT
1 CAAATTTAAATATTATCTCTAAATTATTTTAATTTATTTAAAAATAAATTAGATGATCAATAAGT
* * *
7139637 GAATTTTTATTGGT
66 AAATTTTAATTGAT
*
7139651 CCAA-TTAATATATTATCTCTAAATTATTTTAA
1 CAAATTTAA-ATATTATCTCTAAATTATTTTAA
7139683 GAGATAAATA
Statistics
Matches: 90, Mismatches: 20, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
78 4 0.04
79 86 0.96
ACGTcount: A:0.39, C:0.06, G:0.09, T:0.46
Consensus pattern (79 bp):
CAAATTTAAATATTATCTCTAAATTATTTTAATTTATTTAAAAATAAATTAGATGATCAATAAGT
AAATTTTAATTGAT
Found at i:7146458 original size:31 final size:31
Alignment explanation
Indices: 7146420--7146592 Score: 276
Period size: 31 Copynumber: 5.6 Consensus size: 31
7146410 CACGACATTG
*
7146420 GTTATATGCATGGCGTGTTACAACATTTTAT
1 GTTATATGCATGGCGTGTTACCACATTTTAT
*
7146451 GTTATATGCATGGCATGTTACCACATTTTACT
1 GTTATATGCATGGCGTGTTACCACATTTTA-T
* *
7146483 -TTATATGCATGGCGTGTTACAACATTTTAC
1 GTTATATGCATGGCGTGTTACCACATTTTAT
*
7146513 GTTATATGCATGGCGTGTTACCACATTTTAC
1 GTTATATGCATGGCGTGTTACCACATTTTAT
*
7146544 GTTATATGCATGGCGTGTTGCCACATTTTAT
1 GTTATATGCATGGCGTGTTACCACATTTTAT
7146575 GTTATATGCATGGCGTGT
1 GTTATATGCATGGCGTGT
7146593 AACGTAATGA
Statistics
Matches: 132, Mismatches: 8, Indels: 4
0.92 0.06 0.03
Matches are distributed among these distances:
31 131 0.99
32 1 0.01
ACGTcount: A:0.23, C:0.16, G:0.20, T:0.40
Consensus pattern (31 bp):
GTTATATGCATGGCGTGTTACCACATTTTAT
Found at i:7150330 original size:15 final size:14
Alignment explanation
Indices: 7150310--7150357 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 14
7150300 AAGCACTTTT
7150310 ATTTATATTTATATA
1 ATTTATATTTAT-TA
* *
7150325 ATTTATATGTCATGA
1 ATTTATAT-TTATTA
7150340 ATTTATATTT-TTA
1 ATTTATATTTATTA
7150353 ATTTA
1 ATTTA
7150358 AAAAATATAT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
13 7 0.25
14 1 0.04
15 17 0.61
16 3 0.11
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.58
Consensus pattern (14 bp):
ATTTATATTTATTA
Found at i:7150956 original size:31 final size:31
Alignment explanation
Indices: 7150897--7150956 Score: 95
Period size: 31 Copynumber: 1.9 Consensus size: 31
7150887 TGAATGACAT
*
7150897 CTTGTGGTGACACGCTGAGTGGGAGCAGATG
1 CTTGTGGTGACACGCTGAGTGGCAGCAGATG
7150928 CTTGTGGTGACACGCTGAGT-GCATGCAGA
1 CTTGTGGTGACACGCTGAGTGGCA-GCAGA
7150957 CTTATGAGGT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 2 0.07
31 25 0.93
ACGTcount: A:0.20, C:0.18, G:0.38, T:0.23
Consensus pattern (31 bp):
CTTGTGGTGACACGCTGAGTGGCAGCAGATG
Found at i:7151077 original size:86 final size:86
Alignment explanation
Indices: 7150929--7151263 Score: 439
Period size: 86 Copynumber: 3.9 Consensus size: 86
7150919 GAGCAGATGC
* * *
7150929 TTGTGGTGACACGCTGAGTGCATGCAGACTTATGAG-GTGACACGTTGACTTGTTGCAATCTTGT
1 TTGTGGTGACACGCTGAGTGCATGCAGACTTCTG-GCGTGACACGCTGACTTGTTGCAGTCTTGT
7150993 GGGGTGACACGACAAGGGCCAA
65 GGGGTGACACGACAAGGGCCAA
* * * *
7151015 TTGTGGTGACATGCTGAGTGGATGCAGACTTCTGGCGTGACATGTTGACTTGTTGCAGTCTTGTG
1 TTGTGGTGACACGCTGAGTGCATGCAGACTTCTGGCGTGACACGCTGACTTGTTGCAGTCTTGTG
*
7151080 GGGTGACACTG-CACGGGCCAA
66 GGGTGACAC-GACAAGGGCCAA
* ** * *
7151101 TTGTGGTGACACACT-AGGTAAATGCAGACTTTTGACGTGACACGCTGACTTGTTGCAGTCTTGT
1 TTGTGGTGACACGCTGA-GTGCATGCAGACTTCTGGCGTGACACGCTGACTTGTTGCAGTCTTGT
*
7151165 GGGGTGACATGACACA--GCTCAA
65 GGGGTGACACGACA-AGGGC-CAA
*
7151187 TTGTGGTGACACGTTGAGTGCATGCAGACTTCTGGCGTGACACGCTGACTTGTTGCAGTCTTGT-
1 TTGTGGTGACACGCTGAGTGCATGCAGACTTCTGGCGTGACACGCTGACTTGTTGCAGTCTTGTG
*
7151251 GGATGACACGACA
66 GGGTGACACGACA
7151264 CAAAATTAAT
Statistics
Matches: 218, Mismatches: 24, Indels: 15
0.85 0.09 0.06
Matches are distributed among these distances:
85 16 0.07
86 200 0.92
87 2 0.01
ACGTcount: A:0.21, C:0.19, G:0.32, T:0.28
Consensus pattern (86 bp):
TTGTGGTGACACGCTGAGTGCATGCAGACTTCTGGCGTGACACGCTGACTTGTTGCAGTCTTGTG
GGGTGACACGACAAGGGCCAA
Found at i:7155173 original size:31 final size:31
Alignment explanation
Indices: 7155138--7155257 Score: 159
Period size: 31 Copynumber: 3.9 Consensus size: 31
7155128 ATAAAGAAAT
* * *
7155138 AAATGTTGTTACACGCCATGCATATCAAGTA
1 AAATGTCGTGACACGCCATGCATATCAAGTC
* * *
7155169 AAATGTTGTAACATGCCATGCATATCAAGTC
1 AAATGTCGTGACACGCCATGCATATCAAGTC
* * *
7155200 AAATGTCGTGACACACCATACATATGAAGTC
1 AAATGTCGTGACACGCCATGCATATCAAGTC
7155231 AAATGTCGTGACACGCCATGCATATCA
1 AAATGTCGTGACACGCCATGCATATCA
7155258 GTGTCGTGGC
Statistics
Matches: 77, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 77 1.00
ACGTcount: A:0.36, C:0.22, G:0.17, T:0.26
Consensus pattern (31 bp):
AAATGTCGTGACACGCCATGCATATCAAGTC
Found at i:7155388 original size:55 final size:54
Alignment explanation
Indices: 7155308--7155732 Score: 337
Period size: 55 Copynumber: 7.8 Consensus size: 54
7155298 CACCATTAGC
* * * *
7155308 CGTGACACG-CTAAAAACATAAAAAACCAGTTAACCCACAACACTCCAAGAATAGC
1 CGTGACACGTC-AAAAAC-CAAAAAACCAGTTAACCCACAACACTCCAGGAACAGT
* * * * * **
7155363 CATGACGCGTCAAAAATCCAAAAAACTAATTAACCCACAACACGCCAGGAACAAC
1 CGTGACACGTCAAAAA-CCAAAAAACCAGTTAACCCACAACACTCCAGGAACAGT
* ** * * * *
7155418 CGTCACACACCAAAAACCCAAAAATCCAGTTAACCCGCAACACGCTAGGAACAGT
1 CGTGACACGTCAAAAA-CCAAAAAACCAGTTAACCCACAACACTCCAGGAACAGT
* * * * **
7155473 CGTGACA-TTCTAAAAACTCAAAAAACCAGTTAACCCATAACA-TGCTAGAAACAAC
1 CGTGACACGTC-AAAAAC-CAAAAAACCAGTTAACCCACAACACT-CCAGGAACAGT
* * * * *
7155528 CGTCACACGCCAAAAACCAAAAAATCTAGTTAACCCACTACA-TGCCAGGAATAGT
1 CGTGACACGTCAAAAACCAAAAAA-CCAGTTAACCCACAACACT-CCAGGAACAGT
** * *
7155583 AATGACACG-CTAAAAACCCAAAAAACAAGTTAACCCACAACA-TGCTAGGAACAGT
1 CGTGACACGTC-AAAAA-CCAAAAAACCAGTTAACCCACAACACT-CCAGGAACAGT
* *
7155638 CGTGACAC-T-AAAAACCTAAAAAACCAGTTAACCCATAACACGCCAGGAACAGT
1 CGTGACACGTCAAAAACC-AAAAAACCAGTTAACCCACAACACTCCAGGAACAGT
7155691 CGTGACACG-CTAAAAACCCAAAAAACCAGTTAACCCACAACA
1 CGTGACACGTC-AAAAA-CCAAAAAACCAGTTAACCCACAACA
7155733 TGCCATATGC
Statistics
Matches: 297, Mismatches: 57, Indels: 32
0.77 0.15 0.08
Matches are distributed among these distances:
52 2 0.01
53 44 0.15
54 10 0.03
55 228 0.77
56 13 0.04
ACGTcount: A:0.46, C:0.29, G:0.12, T:0.13
Consensus pattern (54 bp):
CGTGACACGTCAAAAACCAAAAAACCAGTTAACCCACAACACTCCAGGAACAGT
Found at i:7155488 original size:110 final size:110
Alignment explanation
Indices: 7155327--7155737 Score: 456
Period size: 110 Copynumber: 3.8 Consensus size: 110
7155317 CTAAAAACAT
* * * * * * * *
7155327 AAAAAA-CCAGTTAACCCACAACACTCCAAGAATAGCCATGACGCG-TCAAAAATCCAAAAAACT
1 AAAAAATCCAGTTAACCCACAACACGCCAGGAACAGTCGTGACACGCT-AAAAACCCAAAAAACC
*
7155390 AATTAACCCACAACACGCCAGGAACAACCGTCACACACCAAAAACC
65 AATTAACCCACAACATGCCAGGAACAACCGTCACACACCAAAAACC
* * * ** *
7155436 CAAAAATCCAGTTAACCCGCAACACGCTAGGAACAGTCGTGACATTCTAAAAACTCAAAAAACCA
1 AAAAAATCCAGTTAACCCACAACACGCCAGGAACAGTCGTGACACGCTAAAAACCCAAAAAACCA
* * * * *
7155501 GTTAACCCATAACATGCTAGAAACAACCGTCACACGCCAAAAACC
66 ATTAACCCACAACATGCCAGGAACAACCGTCACACACCAAAAACC
* * * * **
7155546 AAAAAATCTAGTTAACCCACTACATGCCAGGAATAGTAATGACACGCTAAAAACCCAAAAAA-CA
1 AAAAAATCCAGTTAACCCACAACACGCCAGGAACAGTCGTGACACGCTAAAAACCCAAAAAACCA
* ** * *
7155610 AGTTAACCCACAACATGCTAGGAACAGTCGT--GACACTAAAAACC
66 A-TTAACCCACAACATGCCAGGAACAACCGTCACACACCAAAAACC
*
7155654 TAAAAAA-CCAGTTAACCCATAACACGCCAGGAACAGTCGTGACACGCTAAAAACCCAAAAAACC
1 -AAAAAATCCAGTTAACCCACAACACGCCAGGAACAGTCGTGACACGCTAAAAACCCAAAAAACC
*
7155718 AGTTAACCCACAACATGCCA
65 AATTAACCCACAACATGCCA
7155738 TATGCAGACG
Statistics
Matches: 248, Mismatches: 49, Indels: 11
0.81 0.16 0.04
Matches are distributed among these distances:
108 75 0.30
109 15 0.06
110 157 0.63
111 1 0.00
ACGTcount: A:0.46, C:0.30, G:0.11, T:0.13
Consensus pattern (110 bp):
AAAAAATCCAGTTAACCCACAACACGCCAGGAACAGTCGTGACACGCTAAAAACCCAAAAAACCA
ATTAACCCACAACATGCCAGGAACAACCGTCACACACCAAAAACC
Found at i:7155563 original size:165 final size:163
Alignment explanation
Indices: 7155308--7155737 Score: 479
Period size: 165 Copynumber: 2.6 Consensus size: 163
7155298 CACCATTAGC
* * * * * * * *
7155308 CGTGACACGCTAAAAACATAAAAAACCAGTTAACCCACAACACTCCA-AGAATAGCCATGACGCG
1 CGTGACA--CTAAAAACCTAAAAAACCAGTTAACCCATAACACGCCAGA-AACAACCGTCACACG
* * * * **
7155372 TCAAAAATCCAAAAAACTAATTAACCCACAACACGCCAGGAACAACCGTCACACACCAAAAACCC
63 CCAAAAACCCAAAAAACTAGTTAACCCACAACATGCCAGGAACAACAATCACACACCAAAAACCC
* * *
7155437 AAAAATCCAGTTAACCCGCAACACGCTAGGAACAGT
128 AAAAAACAAGTTAACCCACAACACGCTAGGAACAGT
* *
7155473 CGTGACATTCTAAAAA-CTCAAAAAACCAGTTAACCCATAACATGCTAGAAACAACCGTCACACG
1 CGTGACA--CTAAAAACCT-AAAAAACCAGTTAACCCATAACACGCCAGAAACAACCGTCACACG
* * ** * * *
7155537 CCAAAAA-CCAAAAAATCTAGTTAACCCACTACATGCCAGGAATAGTAATGACACGCTAAAAACC
63 CCAAAAACCCAAAAAA-CTAGTTAACCCACAACATGCCAGGAACAACAATCACACACCAAAAACC
*
7155601 CAAAAAACAAGTTAACCCACAACATGCTAGGAACAGT
127 CAAAAAACAAGTTAACCCACAACACGCTAGGAACAGT
* ** * *
7155638 CGTGACACTAAAAACCTAAAAAACCAGTTAACCCATAACACGCCAGGAACAGTCGTGACACGCTA
1 CGTGACACTAAAAACCTAAAAAACCAGTTAACCCATAACACGCCAGAAACAACCGTCACACGCCA
*
7155703 AAAACCCAAAAAACCAGTTAACCCACAACATGCCA
66 AAAACCCAAAAAACTAGTTAACCCACAACATGCCA
7155738 TATGCAGACG
Statistics
Matches: 223, Mismatches: 37, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
163 72 0.32
164 19 0.09
165 131 0.59
166 1 0.00
ACGTcount: A:0.46, C:0.30, G:0.12, T:0.13
Consensus pattern (163 bp):
CGTGACACTAAAAACCTAAAAAACCAGTTAACCCATAACACGCCAGAAACAACCGTCACACGCCA
AAAACCCAAAAAACTAGTTAACCCACAACATGCCAGGAACAACAATCACACACCAAAAACCCAAA
AAACAAGTTAACCCACAACACGCTAGGAACAGT
Found at i:7156194 original size:23 final size:23
Alignment explanation
Indices: 7156168--7156228 Score: 86
Period size: 23 Copynumber: 2.7 Consensus size: 23
7156158 TTCTTTCACA
7156168 CCATGGCGTGTCACATATTAAAC
1 CCATGGCGTGTCACATATTAAAC
* * *
7156191 CCATGGCATGTCACATATTCAAG
1 CCATGGCGTGTCACATATTAAAC
*
7156214 CCATGCCGTGTCACA
1 CCATGGCGTGTCACA
7156229 CGTTTGACCA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.25
Consensus pattern (23 bp):
CCATGGCGTGTCACATATTAAAC
Found at i:7156413 original size:104 final size:104
Alignment explanation
Indices: 7156217--7156700 Score: 386
Period size: 104 Copynumber: 4.7 Consensus size: 104
7156207 ATTCAAGCCA
* ** * * *
7156217 TGCCGTGTCACACGTT-TGACCATGGCGTGTCCCACACTCT-AACCACTACCGTTTCACACCCGT
1 TGCCGTGTCACACATTCCCACCATGGCGTGTCACACACTCTAAACC-CTACCGTGTCACACCCTT
** * * * *** * ** *
7156280 CCCACATATTCTTACCATGTCATCCCACACATTTTCACCC
65 GTCACACATTATCATTGTGCCATTTCACACATTATCACCC
* * * * * * *
7156320 TGGCGTGTCACAAATTCCCTCCATAGTGTGTCACACACTCTAAACCTTACCGTGTCATACCCTTG
1 TGCCGTGTCACACATTCCCACCATGGCGTGTCACACACTCTAAACCCTACCGTGTCACACCCTTG
* * * *
7156385 TCACGCATTATCATTATGCCATTTCACACATTATGACTC
66 TCACACATTATCATTGTGCCATTTCACACATTATCACCC
* * ** * * * *
7156424 TGTCGTGTCACACGTTCTGACCATGGCGTGTCACATACTCTAAACGCTGCCATGTCACA-CCTGT
1 TGCCGTGTCACACATTCCCACCATGGCGTGTCACACACTCTAAACCCTACCGTGTCACACCCT-T
* * *
7156488 GTCACATATTCTC-TTCGTGCCGTTTTCA-ACATTATCACCC
65 GTCACACATTATCATT-GTGCC-ATTTCACACATTATCACCC
* * * ** ** *
7156528 TACCGTGTCACAGATTCCCTCCATGGCGTGTCACACACTCTAAACCCTATTGTGTCACACCAGTC
1 TGCCGTGTCACACATTCCCACCATGGCGTGTCACACACTCTAAACCCTACCGTGTCACACCCTTG
* *** *
7156593 TCACACATTATCACTGTGTTGTTTCACACATTATAACCC
66 TCACACATTATCATTGTGCCATTTCACACATTATCACCC
** *
7156632 TGCCGTGTCACACATT-TGACCATGGCGTGTCACACACTCTAAACCCTGCCGTGTCACACCCTTG
1 TGCCGTGTCACACATTCCCACCATGGCGTGTCACACACTCTAAACCCTACCGTGTCACACCCTTG
7156696 TCACA
66 TCACA
7156701 TTCTCACCAT
Statistics
Matches: 291, Mismatches: 82, Indels: 16
0.75 0.21 0.04
Matches are distributed among these distances:
103 67 0.23
104 213 0.73
105 11 0.04
ACGTcount: A:0.23, C:0.34, G:0.14, T:0.29
Consensus pattern (104 bp):
TGCCGTGTCACACATTCCCACCATGGCGTGTCACACACTCTAAACCCTACCGTGTCACACCCTTG
TCACACATTATCATTGTGCCATTTCACACATTATCACCC
Found at i:7156434 original size:23 final size:23
Alignment explanation
Indices: 7156408--7156458 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
7156398 TTATGCCATT
*
7156408 TCACACATTATGACTC-TGTCGTG
1 TCACACATTATGAC-CATGGCGTG
* *
7156431 TCACACGTTCTGACCATGGCGTG
1 TCACACATTATGACCATGGCGTG
7156454 TCACA
1 TCACA
7156459 TACTCTAAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 1 0.04
23 23 0.96
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (23 bp):
TCACACATTATGACCATGGCGTG
Found at i:7156604 original size:208 final size:207
Alignment explanation
Indices: 7156217--7156701 Score: 537
Period size: 208 Copynumber: 2.3 Consensus size: 207
7156207 ATTCAAGCCA
* * * * * * *
7156217 TGCCGTGTCACACGTTTGACCATGGCGTGTCCCACACTCT-AACCACTACCGTTTCACACCCGTC
1 TGCCGTGTCACACATTTGACCATGGCGTGTCACACACTCTAAACC-CTGCCATGTCACACCCTTG
* * * * * ** * **
7156281 CCACATATTCT-TACCATGTC-ATCCCACACATTTTCACCCTGGCGTGTCACAAATTCCCTCCAT
65 TCACATATTCTCT-TCGTGCCGTTTTCA-ACATTATCACCCTACCGTGTCACAAATTCCCTCCAT
* * * ** * * *
7156344 AGTGTGTCACACACTCTAAACCTTACCGTGTCATACCCTTGTCACGCATTATCATTATGCCATTT
128 AGCGTGTCACACACTCTAAACCCTACCGTGTCACACCAGTCTCACACATTATCACTATGCCATTT
* *
7156409 CACACATTATGACTC
193 CACACATTATAACCC
* * * *
7156424 TGTCGTGTCACACGTTCTGACCATGGCGTGTCACATACTCTAAACGCTGCCATGTCACA-CCTGT
1 TGCCGTGTCACACATT-TGACCATGGCGTGTCACACACTCTAAACCCTGCCATGTCACACCCT-T
* *
7156488 GTCACATATTCTCTTCGTGCCGTTTTCAACATTATCACCCTACCGTGTCACAGATTCCCTCCATG
64 GTCACATATTCTCTTCGTGCCGTTTTCAACATTATCACCCTACCGTGTCACAAATTCCCTCCATA
** * ***
7156553 GCGTGTCACACACTCTAAACCCTATTGTGTCACACCAGTCTCACACATTATCACTGTGTTGTTTC
129 GCGTGTCACACACTCTAAACCCTACCGTGTCACACCAGTCTCACACATTATCACTATGCCATTTC
7156618 ACACATTATAACCC
194 ACACATTATAACCC
*
7156632 TGCCGTGTCACACATTTGACCATGGCGTGTCACACACTCTAAACCCTGCCGTGTCACACCCTTGT
1 TGCCGTGTCACACATTTGACCATGGCGTGTCACACACTCTAAACCCTGCCATGTCACACCCTTGT
7156697 CACAT
66 CACAT
7156702 TCTCACCATG
Statistics
Matches: 230, Mismatches: 42, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
207 64 0.28
208 159 0.69
209 7 0.03
ACGTcount: A:0.23, C:0.34, G:0.14, T:0.29
Consensus pattern (207 bp):
TGCCGTGTCACACATTTGACCATGGCGTGTCACACACTCTAAACCCTGCCATGTCACACCCTTGT
CACATATTCTCTTCGTGCCGTTTTCAACATTATCACCCTACCGTGTCACAAATTCCCTCCATAGC
GTGTCACACACTCTAAACCCTACCGTGTCACACCAGTCTCACACATTATCACTATGCCATTTCAC
ACATTATAACCC
Found at i:7156684 original size:24 final size:22
Alignment explanation
Indices: 7156616--7156690 Score: 87
Period size: 22 Copynumber: 3.3 Consensus size: 22
7156606 CTGTGTTGTT
7156616 TCACACATTATAACCCTGCCGTG
1 TCACACATTA-AACCCTGCCGTG
** * *
7156639 TCACACATTTGACCATGGCGTG
1 TCACACATTAAACCCTGCCGTG
7156661 TCACACACTCTAAACCCTGCCGTG
1 TCACACA-T-TAAACCCTGCCGTG
7156685 TCACAC
1 TCACAC
7156691 CCTTGTCACA
Statistics
Matches: 42, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
22 16 0.38
23 10 0.24
24 16 0.38
ACGTcount: A:0.25, C:0.36, G:0.15, T:0.24
Consensus pattern (22 bp):
TCACACATTAAACCCTGCCGTG
Found at i:7156724 original size:23 final size:23
Alignment explanation
Indices: 7156697--7156814 Score: 94
Period size: 23 Copynumber: 5.1 Consensus size: 23
7156687 ACACCCTTGT
* * *
7156697 CACATTCTCACCATGTCGTCTCA
1 CACATTCTCACCATGACATGTCA
* * *
7156720 CACATTATCACCTTGACGTGTCA
1 CACATTCTCACCATGACATGTCA
* * * *
7156743 CACACTCTAAACCCTGTCATGTCA
1 CACATTCT-CACCATGACATGTCA
*
7156767 CATATTCTCACCATGACATGTCA
1 CACATTCTCACCATGACATGTCA
* *
7156790 CACATTAC-CACCATGCCTTGTCA
1 CACATT-CTCACCATGACATGTCA
7156813 CA
1 CA
7156815 AACTTTATAC
Statistics
Matches: 75, Mismatches: 18, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
23 57 0.76
24 18 0.24
ACGTcount: A:0.27, C:0.36, G:0.09, T:0.28
Consensus pattern (23 bp):
CACATTCTCACCATGACATGTCA
Found at i:7156766 original size:103 final size:103
Alignment explanation
Indices: 7156220--7156768 Score: 266
Period size: 104 Copynumber: 5.3 Consensus size: 103
7156210 CAAGCCATGC
* ** * * * *
7156220 CGTGTCACACGTTTGACCATGGCGTGTCCCACACTCT-AACCACTACCGTTTCACACC-CGTCCC
1 CGTGTCACACATTAAACCATGGCATGTCACACACTCTAAACC-CTACCGTGTCACACCAC-TCTC
* * * * * * * *
7156283 ACATATTCTTACCATGTCATCCCACACATTTTCACCCTGG
64 ACACATTATCACCATGTCGTCTCACACATTATAACCCTGA
* *** * ** * * *
7156323 CGTGTCACAAATTCCCTCCATAGTGTGTCACACACTCTAAACCTTACCGTGTCATACC-CTTGTC
1 CGTGTCACACATT-AAACCATGGCATGTCACACACTCTAAACCCTACCGTGTCACACCAC-TCTC
* ** * * * * * *
7156387 ACGCATTATCATTATGCCATTTCACACATTATGACTCTGT
64 ACACATTATCACCATGTCGTCTCACACATTATAACCCTGA
* ** * * * * * ** *
7156427 CGTGTCACACGTTCTGACCATGGCGTGTCACATACTCTAAACGCTGCCATGTCACACCTGTGTCA
1 CGTGTCACACATT-AAACCATGGCATGTCACACACTCTAAACCCTACCGTGTCACACCACTCTCA
* * ** * * * *
7156492 CATATTCTCTTCGTGCCGTTTTCA-ACATTATCACCCT-A
65 CACATTATCACCATGTCG-TCTCACACATTATAACCCTGA
* *** * ** *
7156530 CCGTGTCACAGATTCCCTCCATGGCGTGTCACACACTCTAAACCCTATTGTGTCACACCAGTCTC
1 -CGTGTCACACATT-AAACCATGGCATGTCACACACTCTAAACCCTACCGTGTCACACCACTCTC
** * * *
7156595 ACACATTATCACTGTGTTGTTTCACACATTATAACCCTGC
64 ACACATTATCACCATGTCGTCTCACACATTATAACCCTGA
** * * **
7156635 CGTGTCACACATTTGACCATGGCGTGTCACACACTCTAAACCCTGCCGTGTCACACC-CT-TGTC
1 CGTGTCACACATTAAACCATGGCATGTCACACACTCTAAACCCTACCGTGTCACACCACTCTCAC
* * *
7156698 ACATTCTCACCATGTCGTCTCACACATTATCACCTTGA
66 ACATTATCACCATGTCGTCTCACACATTATAACCCTGA
* *
7156736 CGTGTCACACACTCTAAACCCTGTCATGTCACA
1 CGTGTCACACA-T-TAAACCATGGCATGTCACA
7156769 TATTCTCACC
Statistics
Matches: 341, Mismatches: 96, Indels: 18
0.75 0.21 0.04
Matches are distributed among these distances:
101 43 0.13
102 2 0.01
103 68 0.20
104 219 0.64
105 9 0.03
ACGTcount: A:0.23, C:0.34, G:0.13, T:0.29
Consensus pattern (103 bp):
CGTGTCACACATTAAACCATGGCATGTCACACACTCTAAACCCTACCGTGTCACACCACTCTCAC
ACATTATCACCATGTCGTCTCACACATTATAACCCTGA
Found at i:7156812 original size:70 final size:70
Alignment explanation
Indices: 7156700--7156838 Score: 170
Period size: 70 Copynumber: 2.0 Consensus size: 70
7156690 CCCTTGTCAC
* * * * * *
7156700 ATTCTCACCATGTCGTCTCACACATTATCACCTTGACGTGTCACACACTCTAAACCCTGTCATGT
1 ATTCTCACCATGACATCTCACACATTACCACCATGACGTGTCACAAACTCTAAACCCTGCCATGT
7156765 CACAT
66 CACAT
* * * * * *
7156770 ATTCTCACCATGACATGTCACACATTACCACCATGCCTTGTCACAAACTTTATACCCTGCCGTGT
1 ATTCTCACCATGACATCTCACACATTACCACCATGACGTGTCACAAACTCTAAACCCTGCCATGT
7156835 CACA
66 CACA
7156839 CTCGTCGCAC
Statistics
Matches: 57, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
70 57 1.00
ACGTcount: A:0.27, C:0.35, G:0.10, T:0.29
Consensus pattern (70 bp):
ATTCTCACCATGACATCTCACACATTACCACCATGACGTGTCACAAACTCTAAACCCTGCCATGT
CACAT
Found at i:7156870 original size:81 final size:81
Alignment explanation
Indices: 7156764--7157057 Score: 365
Period size: 81 Copynumber: 3.6 Consensus size: 81
7156754 CCCTGTCATG
* * * *
7156764 TCACATATTCTCACCATGACATGTCACACATTACCACCATGCCTTGTCACAAACTTTATACCCTG
1 TCACATAGTCTCACCATGACATGTCACACATTGCCACCATGCCGTGTCACAAACTCTATACCCTG
7156829 CCGTGTCACA-CTCGTC
66 CCGTGTCACACCT-GTC
* * * *
7156845 GCACATAGTCTCACTATGGCATGTCACACATTGCCACCATGCCGTGTCACAAACTCTATATCCTG
1 TCACATAGTCTCACCATGACATGTCACACATTGCCACCATGCCGTGTCACAAACTCTATACCCTG
**
7156910 CCACGTCACACCTGTC
66 CCGTGTCACACCTGTC
* * ** *
7156926 TCACATAGTTTCACAATGACATGTCACACATTGCCACCATGTTGTGTCTCAAACTCTATACCCTG
1 TCACATAGTCTCACCATGACATGTCACACATTGCCACCATGCCGTGTCACAAACTCTATACCCTG
** *
7156991 TTGTGTCACACCTATC
66 CCGTGTCACACCTGTC
* * * * *
7157007 TCAAATATTCTCACCATGACGTATCACACATTCCCACCATGCCGTGTCACA
1 TCACATAGTCTCACCATGACATGTCACACATTGCCACCATGCCGTGTCACA
7157058 CATTCCCACA
Statistics
Matches: 179, Mismatches: 33, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
81 177 0.99
82 2 0.01
ACGTcount: A:0.26, C:0.34, G:0.12, T:0.28
Consensus pattern (81 bp):
TCACATAGTCTCACCATGACATGTCACACATTGCCACCATGCCGTGTCACAAACTCTATACCCTG
CCGTGTCACACCTGTC
Found at i:7157039 original size:23 final size:23
Alignment explanation
Indices: 7157013--7157066 Score: 81
Period size: 23 Copynumber: 2.3 Consensus size: 23
7157003 TATCTCAAAT
*
7157013 ATTCTCACCATGACGTATCACAC
1 ATTCCCACCATGACGTATCACAC
* *
7157036 ATTCCCACCATGCCGTGTCACAC
1 ATTCCCACCATGACGTATCACAC
7157059 ATTCCCAC
1 ATTCCCAC
7157067 AATTCTGTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.26, C:0.41, G:0.09, T:0.24
Consensus pattern (23 bp):
ATTCCCACCATGACGTATCACAC
Found at i:7158671 original size:27 final size:27
Alignment explanation
Indices: 7158636--7158696 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
7158626 AAAGAAAAAC
* * *
7158636 ATGATAATTACAAGATGGAATTCACAT
1 ATGACAATTACAAGATAGAATCCACAT
**
7158663 ATGACAATTAGGAGATAGAATCCACAT
1 ATGACAATTACAAGATAGAATCCACAT
7158690 ATGACAA
1 ATGACAA
7158697 AATAAAAAAG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.46, C:0.13, G:0.16, T:0.25
Consensus pattern (27 bp):
ATGACAATTACAAGATAGAATCCACAT
Found at i:7162839 original size:10 final size:10
Alignment explanation
Indices: 7162810--7162839 Score: 51
Period size: 11 Copynumber: 2.9 Consensus size: 10
7162800 ACATTTAACT
7162810 ATTTTTCTTC
1 ATTTTTCTTC
7162820 ATTTTCTCTTC
1 ATTTT-TCTTC
7162831 ATTTTTCTT
1 ATTTTTCTT
7162840 AGAATAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.10, C:0.20, G:0.00, T:0.70
Consensus pattern (10 bp):
ATTTTTCTTC
Found at i:7164740 original size:46 final size:46
Alignment explanation
Indices: 7164673--7164760 Score: 122
Period size: 46 Copynumber: 1.9 Consensus size: 46
7164663 CTTGAAGTCA
* *
7164673 ATTTTTTCGATTCCTTAAATTTCATCTAAACCCCATTTGCACCAAT
1 ATTTTGTCGATTCCTTAAATTTCATCTAAACACCATTTGCACCAAT
* * * *
7164719 ATTTTGTCGATTTCTTCAATTTCATTTAAATACCATTTGCAC
1 ATTTTGTCGATTCCTTAAATTTCATCTAAACACCATTTGCAC
7164761 TAACAAGAAG
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 36 1.00
ACGTcount: A:0.27, C:0.23, G:0.06, T:0.44
Consensus pattern (46 bp):
ATTTTGTCGATTCCTTAAATTTCATCTAAACACCATTTGCACCAAT
Found at i:7165290 original size:2 final size:2
Alignment explanation
Indices: 7165283--7165317 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
7165273 TTGGTAGACT
7165283 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7165318 TCAAAAGACC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7165434 original size:2 final size:2
Alignment explanation
Indices: 7165427--7165460 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
7165417 TCAATTTAGN
7165427 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7165461 GTCAAAAGAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7165466 original size:144 final size:143
Alignment explanation
Indices: 7165283--7165570 Score: 558
Period size: 144 Copynumber: 2.0 Consensus size: 143
7165273 TTGGTAGACT
*
7165283 TATATATATATATATATATATATATATATATATATTCAAAAGACCTATCCAATCCCTATATTCTT
1 TATATATATATATATATATATATATATATATATAGTCAAAAGACCTATCCAATCCCTATATTCTT
7165348 TCATTTTGTCTAATTTAGTCCCTGTATTCAAAATTGAAGCTGTTTAATCCCTAAATTTTGGAAAT
66 TCATTTTGTCTAATTTAGTCCCTGTATTCAAAATTGAAGCTGTTTAATCCCTAAATTTTGGAAAT
7165413 TTCTTCAATTTAG
131 TTCTTCAATTTAG
7165426 NTATATATATATATATATATATATATATATATATAGTCAAAAGACCTATCCAATCCCTATATTCT
1 -TATATATATATATATATATATATATATATATATAGTCAAAAGACCTATCCAATCCCTATATTCT
7165491 TTCATTTTGTCTAATTTAGTCCCTGTATTCAAAATTGAAGCTGTTTAATCCCTAAATTTTGGAAA
65 TTCATTTTGTCTAATTTAGTCCCTGTATTCAAAATTGAAGCTGTTTAATCCCTAAATTTTGGAAA
7165556 TTTCTTCAATTTAG
130 TTTCTTCAATTTAG
7165570 T
1 T
7165571 CTCTCCCCTT
Statistics
Matches: 143, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
143 1 0.01
144 142 0.99
ACGTcount: A:0.34, C:0.15, G:0.07, T:0.44
Consensus pattern (143 bp):
TATATATATATATATATATATATATATATATATAGTCAAAAGACCTATCCAATCCCTATATTCTT
TCATTTTGTCTAATTTAGTCCCTGTATTCAAAATTGAAGCTGTTTAATCCCTAAATTTTGGAAAT
TTCTTCAATTTAG
Found at i:7165856 original size:31 final size:31
Alignment explanation
Indices: 7165820--7165901 Score: 89
Period size: 31 Copynumber: 2.6 Consensus size: 31
7165810 ACATCATAGA
*
7165820 GACTAAATTGAATAAAAATATATA-GTAT-AAG
1 GACTAAATTGAA-AAAAATATAGATGT-TGAAG
* *
7165851 GACTAAATT-AAACAAAATTTAGATGTTGTAG
1 GACTAAATTGAAA-AAAATATAGATGTTGAAG
7165882 GACTAAATTGAAAAAAATAT
1 GACTAAATTGAAAAAAATAT
7165902 TTGAAAAATA
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
29 1 0.02
30 11 0.26
31 28 0.65
32 3 0.07
ACGTcount: A:0.52, C:0.05, G:0.13, T:0.29
Consensus pattern (31 bp):
GACTAAATTGAAAAAAATATAGATGTTGAAG
Found at i:7176328 original size:59 final size:59
Alignment explanation
Indices: 7175598--7176329 Score: 730
Period size: 59 Copynumber: 12.4 Consensus size: 59
7175588 TGACTCGAAG
* * * * * * * *
7175598 ATTGAAATTTCTGGATTTGATCTAAGTTTGCCCTATATCAAAACAAGTTCAATTTAAAA
1 ATTGAAATTCCTAGACTTGACCTAAGCTTGACCTATATCAAAACAGGTTCGATTTAAAA
* * * * * *
7175657 ATTGAAATTCCTAAACTTGACTTAGGCTTGACCTATATCAAAACAGGTTCAAATTGAAA
1 ATTGAAATTCCTAGACTTGACCTAAGCTTGACCTATATCAAAACAGGTTCGATTTAAAA
** * * * * * * *
7175716 ATCAAAATTCTTAGATTTAACTTACGCTTAACCTATATAAAAACAGGTTCGATTTAAAA
1 ATTGAAATTCCTAGACTTGACCTAAGCTTGACCTATATCAAAACAGGTTCGATTTAAAA
* * * * * *
7175775 ATTGAAATTCGTAGACTCGACCTAAACTTGACTTATATCAAAACATGTTCGATTTTAAA
1 ATTGAAATTCCTAGACTTGACCTAAGCTTGACCTATATCAAAACAGGTTCGATTTAAAA
* * * * * * *
7175834 ATTGAAATTCCTAGACTTGACATAGAG-TCGACGTATATTAAAATA-GTTTGATTTTAAA
1 ATTGAAATTCCTAGACTTGACCTA-AGCTTGACCTATATCAAAACAGGTTCGATTTAAAA
* * * * * * *
7175892 ATTGAAATTCCTAGACTTAATCTAGGCTCGACTTCTATCAAAATAGGTTCGATTTAAAA
1 ATTGAAATTCCTAGACTTGACCTAAGCTTGACCTATATCAAAACAGGTTCGATTTAAAA
* * * * *
7175951 ATTAAAATTCCTAGACTTGACCTAGGCTTGACCTATATCAAAACAAGTTCGAATTGAAA
1 ATTGAAATTCCTAGACTTGACCTAAGCTTGACCTATATCAAAACAGGTTCGATTTAAAA
** * * * * * * * *
7176010 ATCCAAATTCTTAAACTTGAGCTAAGCTTGACTTATTTTAAAATAGGTTTGATTTAAAA
1 ATTGAAATTCCTAGACTTGACCTAAGCTTGACCTATATCAAAACAGGTTCGATTTAAAA
* * * * *
7176069 ATTGAAATTCCTAGACTTGACTTAGGCTCGACCTATATTAAAACAGGTTTGATTTAAAA
1 ATTGAAATTCCTAGACTTGACCTAAGCTTGACCTATATCAAAACAGGTTCGATTTAAAA
* * * * *
7176128 ATTAAAATTCCTAGACTTGACTTAGGCTCGACCTATATTAAAACAGGTTCGATTTAAAA
1 ATTGAAATTCCTAGACTTGACCTAAGCTTGACCTATATCAAAACAGGTTCGATTTAAAA
* * * * *
7176187 ATTGAAATTCCTAGACTCGATCTAGGCTTGACCTATATTAAAACAGGTTTGATTTAAAA
1 ATTGAAATTCCTAGACTTGACCTAAGCTTGACCTATATCAAAACAGGTTCGATTTAAAA
* * ** * *
7176246 ATTAAAATTCCTGGACTCAACCTAAGCTTGACTTATATCAAAATAGGTTCGATTTAAAA
1 ATTGAAATTCCTAGACTTGACCTAAGCTTGACCTATATCAAAACAGGTTCGATTTAAAA
7176305 ATTGAAATTCCTAGACTTGACCTAA
1 ATTGAAATTCCTAGACTTGACCTAA
7176330 AGGCTCATCT
Statistics
Matches: 558, Mismatches: 112, Indels: 6
0.83 0.17 0.01
Matches are distributed among these distances:
57 1 0.00
58 48 0.09
59 508 0.91
60 1 0.00
ACGTcount: A:0.38, C:0.16, G:0.13, T:0.34
Consensus pattern (59 bp):
ATTGAAATTCCTAGACTTGACCTAAGCTTGACCTATATCAAAACAGGTTCGATTTAAAA
Found at i:7177010 original size:2 final size:2
Alignment explanation
Indices: 7177003--7177041 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
7176993 AAGGAATTTC
*
7177003 AT AT AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7177042 ATGCAAATAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7177419 original size:8 final size:8
Alignment explanation
Indices: 7177406--7177467 Score: 58
Period size: 8 Copynumber: 7.8 Consensus size: 8
7177396 GGATCCCTCA
7177406 TTTTTTC-
1 TTTTTTCT
7177413 TTTTTT-T
1 TTTTTTCT
*
7177420 TTTTTGCT
1 TTTTTTCT
7177428 TTTCTTT-T
1 TTT-TTTCT
7177436 TTTTGTCTCT
1 TTTT-T-TCT
*
7177446 TTCTTTCT
1 TTTTTTCT
7177454 TTTTTTCT
1 TTTTTTCT
7177462 TTTTTT
1 TTTTTT
7177468 TAGGAATAGT
Statistics
Matches: 45, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
7 12 0.27
8 25 0.56
9 4 0.09
10 4 0.09
ACGTcount: A:0.00, C:0.13, G:0.03, T:0.84
Consensus pattern (8 bp):
TTTTTTCT
Found at i:7183666 original size:22 final size:22
Alignment explanation
Indices: 7183638--7183684 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
7183628 CATAGGCGAC
7183638 TTCATGTACATCCCCTTTCTTT
1 TTCATGTACATCCCCTTTCTTT
*
7183660 TTCATGTACATCCCTTTTCTTT
1 TTCATGTACATCCCCTTTCTTT
7183682 TTC
1 TTC
7183685 TTGGACATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.13, C:0.30, G:0.04, T:0.53
Consensus pattern (22 bp):
TTCATGTACATCCCCTTTCTTT
Found at i:7183692 original size:22 final size:22
Alignment explanation
Indices: 7183638--7183692 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
7183628 CATAGGCGAC
*
7183638 TTCATGTACATCCCCTTTCTTT
1 TTCATGGACATCCCCTTTCTTT
* *
7183660 TTCATGTACATCCCTTTTCTTT
1 TTCATGGACATCCCCTTTCTTT
*
7183682 TTCTTGGACAT
1 TTCATGGACAT
7183693 ATTTCATTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.15, C:0.27, G:0.07, T:0.51
Consensus pattern (22 bp):
TTCATGGACATCCCCTTTCTTT
Found at i:7186855 original size:25 final size:25
Alignment explanation
Indices: 7186777--7186858 Score: 69
Period size: 25 Copynumber: 3.1 Consensus size: 25
7186767 AACAATCATT
*
7186777 CCATCTCACCCAGCTCATGTGCATC
1 CCATCTCACTCAGCTCATGTGCATC
* *
7186802 CCA-C-CACATCGTGCACATAGTCGGACATC
1 CCATCTCAC-TC-AGCTCAT-GT--G-CATC
7186831 CCATCTCACTCAGCTCATGTGCATC
1 CCATCTCACTCAGCTCATGTGCATC
7186856 CCA
1 CCA
7186859 CCACATCGTA
Statistics
Matches: 44, Mismatches: 5, Indels: 16
0.68 0.08 0.25
Matches are distributed among these distances:
23 3 0.07
24 2 0.05
25 15 0.34
26 3 0.07
28 3 0.07
29 12 0.27
30 3 0.07
31 3 0.07
ACGTcount: A:0.23, C:0.41, G:0.13, T:0.22
Consensus pattern (25 bp):
CCATCTCACTCAGCTCATGTGCATC
Found at i:7186859 original size:54 final size:54
Alignment explanation
Indices: 7186777--7186990 Score: 338
Period size: 54 Copynumber: 4.0 Consensus size: 54
7186767 AACAATCATT
*
7186777 CCATCTCACCCAGCTCATGTGCATCCCACCACATCGTGCACATAGTCGGACATC
1 CCATCTCACCCAGCTCATGTGCATCCCACCACATCGTGCACATAGCCGGACATC
* * *
7186831 CCATCTCACTCAGCTCATGTGCATCCCACCACATCGTACACCTAGCCGGACATC
1 CCATCTCACCCAGCTCATGTGCATCCCACCACATCGTGCACATAGCCGGACATC
*** * *
7186885 CCATCTCATTTAGCTCATGTGTATCCCACCACATCATGCACATAGCCGGACATC
1 CCATCTCACCCAGCTCATGTGCATCCCACCACATCGTGCACATAGCCGGACATC
*
7186939 CCATCTCACCCAACTCATGTGCATCCCACCACATCGTGCACATAGCCGGACA
1 CCATCTCACCCAGCTCATGTGCATCCCACCACATCGTGCACATAGCCGGACA
7186991 ATATCACCAT
Statistics
Matches: 144, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 144 1.00
ACGTcount: A:0.25, C:0.40, G:0.14, T:0.21
Consensus pattern (54 bp):
CCATCTCACCCAGCTCATGTGCATCCCACCACATCGTGCACATAGCCGGACATC
Found at i:7200453 original size:2 final size:2
Alignment explanation
Indices: 7200441--7200469 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
7200431 AACATCAGAA
7200441 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7200470 TGTTGAGTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7201900 original size:93 final size:92
Alignment explanation
Indices: 7201741--7201925 Score: 352
Period size: 93 Copynumber: 2.0 Consensus size: 92
7201731 CAAAAGGGGA
7201741 TGAAAGTAACGAGAACAAAGGTGAGTGTGCTTTCGTTGCTGAAGGTGATGATTGTGATGTCCTTA
1 TGAAAGTAACGAGAACAAAGGTGAGTGTGCTTTCGTTGCTGAAGGTGATGATTGTGATGTCCTTA
7201806 CAATTTCAGAAAATATGGATGCAAATT
66 CAATTTCAGAAAATATGGATGCAAATT
7201833 NTGAAAGTAACGAGAACAAAGGTGAGTGTGCTTTCGTTGCTGAAGGTGATGATTGTGATGTCCTT
1 -TGAAAGTAACGAGAACAAAGGTGAGTGTGCTTTCGTTGCTGAAGGTGATGATTGTGATGTCCTT
*
7201898 ACAATTTCAGAAAATATGGATGTAAATT
65 ACAATTTCAGAAAATATGGATGCAAATT
7201926 ATGATTGGTA
Statistics
Matches: 91, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
93 91 1.00
ACGTcount: A:0.32, C:0.10, G:0.26, T:0.31
Consensus pattern (92 bp):
TGAAAGTAACGAGAACAAAGGTGAGTGTGCTTTCGTTGCTGAAGGTGATGATTGTGATGTCCTTA
CAATTTCAGAAAATATGGATGCAAATT
Found at i:7213976 original size:39 final size:38
Alignment explanation
Indices: 7213920--7213993 Score: 98
Period size: 39 Copynumber: 1.9 Consensus size: 38
7213910 TCTTAACGTG
*
7213920 TTTCGTGTCTAATCGTGTCT-GACACGTTAAGACACGAAT
1 TTTCGTGTCTAATCGTGT-TAGACACGTCAA-ACACGAAT
7213959 TTTCGTGTCTTAA-CGTGTTAGACACGTCAAACACG
1 TTTCGTGTC-TAATCGTGTTAGACACGTCAAACACG
7213994 TTTAAAACAC
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
38 6 0.19
39 23 0.72
40 3 0.09
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (38 bp):
TTTCGTGTCTAATCGTGTTAGACACGTCAAACACGAAT
Found at i:7216963 original size:21 final size:21
Alignment explanation
Indices: 7216932--7216985 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 21
7216922 AAGTAACTCT
7216932 TAAAAATATATAAAAATAAAAAA
1 TAAAAATATA-AAAAAT-AAAAA
*
7216955 TAAAAATATAAAAAATATAAA
1 TAAAAATATAAAAAATAAAAA
*
7216976 TAATAATATA
1 TAAAAATATA
7216986 CCATGACACT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 13 0.45
22 6 0.21
23 10 0.34
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (21 bp):
TAAAAATATAAAAAATAAAAA
Found at i:7216965 original size:15 final size:15
Alignment explanation
Indices: 7216932--7216977 Score: 58
Period size: 15 Copynumber: 3.0 Consensus size: 15
7216922 AAGTAACTCT
7216932 TAAAAATATATAAAA-A
1 TAAAAA-ATA-AAAATA
7216948 TAAAAAATAAAAATA
1 TAAAAAATAAAAATA
*
7216963 TAAAAAATATAAATA
1 TAAAAAATAAAAATA
7216978 ATAATATACC
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
14 4 0.14
15 18 0.64
16 6 0.21
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (15 bp):
TAAAAAATAAAAATA
Found at i:7216970 original size:9 final size:9
Alignment explanation
Indices: 7216933--7216980 Score: 50
Period size: 9 Copynumber: 5.8 Consensus size: 9
7216923 AGTAACTCTT
7216933 AAAAATATA
1 AAAAATATA
*
7216942 TAAAA-AT-
1 AAAAATATA
7216949 AAAAA-AT-
1 AAAAATATA
7216956 AAAAATATA
1 AAAAATATA
7216965 AAAAATATA
1 AAAAATATA
*
7216974 AATAATA
1 AAAAATA
7216981 ATATACCATG
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
7 11 0.32
8 4 0.12
9 19 0.56
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (9 bp):
AAAAATATA
Found at i:7218966 original size:4 final size:4
Alignment explanation
Indices: 7218957--7218987 Score: 53
Period size: 4 Copynumber: 7.5 Consensus size: 4
7218947 CTGGTTACTA
7218957 TTAT TTAT TTATT TTAT TTAT TTAT TTAT TT
1 TTAT TTAT TTA-T TTAT TTAT TTAT TTAT TT
7218988 TTAATGCAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 22 0.85
5 4 0.15
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTAT
Found at i:7229634 original size:65 final size:63
Alignment explanation
Indices: 7229528--7229829 Score: 314
Period size: 67 Copynumber: 4.8 Consensus size: 63
7229518 TTTGTGAATT
** ** *
7229528 AAATCGAACCTGTTT-TGAGATAAATTGAGCCTAGATTAAGTCTAGGAATTTCAATTTTTTAAA
1 AAATCGAACCTGTTTGTGAGATAGGTCAAGCCTAGATCAAGTCTAGGAATTTCAATTTTTT-AA
* * *
7229591 AAATCGAACCTGTTTTGTGAGATGGGTCGAGCCTAGGTCAAGTCTAGGAATTTCAATTTTTTTTT
1 AAATCGAACCTG-TTTGTGAGATAGGTCAAGCCTAGATCAAGTCTAGGAATTTCAA---TTTTTT
7229656 AA
62 AA
* * *
7229658 AAATCGAACCTGTTTTGTGAGATAGGCCAAGCCTAGGTCAAGTCTAGGAATTTCAATTCTTT--
1 AAATCGAACCTG-TTTGTGAGATAGGTCAAGCCTAGATCAAGTCTAGGAATTTCAATTTTTTAA
* * *
7229720 AAGTCGAACCTG-TTGTTAGATAGGTCAAGCCTAAATCAAGTCTAGGAATTTCAA-TTTTT--
1 AAATCGAACCTGTTTGTGAGATAGGTCAAGCCTAGATCAAGTCTAGGAATTTCAATTTTTTAA
* ** * * *
7229779 AAGTCGAACCTGTTT-TGAGATAGGTTGAGTCTAGACCAAGTCTAGAAATTT
1 AAATCGAACCTGTTTGTGAGATAGGTCAAGCCTAGATCAAGTCTAGGAATTT
7229830 TTGTTTTTTT
Statistics
Matches: 210, Mismatches: 23, Indels: 16
0.84 0.09 0.06
Matches are distributed among these distances:
59 45 0.21
60 40 0.19
62 11 0.05
63 12 0.06
64 8 0.04
65 33 0.16
67 55 0.26
68 6 0.03
ACGTcount: A:0.31, C:0.14, G:0.20, T:0.34
Consensus pattern (63 bp):
AAATCGAACCTGTTTGTGAGATAGGTCAAGCCTAGATCAAGTCTAGGAATTTCAATTTTTTAA
Found at i:7229837 original size:59 final size:59
Alignment explanation
Indices: 7229661--7229829 Score: 187
Period size: 59 Copynumber: 2.8 Consensus size: 59
7229651 TTTTTAAAAA
* * *** *
7229661 TCGAACCTGTTTTGTGAGATAGGCCAAGCCTAGGTCAAGTCTAGGAATTTCAATTCTTTAAG
1 TCGAACCTG--TTGTTAGATAGGTCAAGCCTAAACCAAGTCTAGAAATTTCAATT-TTTAAG
* *
7229723 TCGAACCTGTTGTTAGATAGGTCAAGCCTAAATCAAGTCTAGGAATTTCAATTTTTAAG
1 TCGAACCTGTTGTTAGATAGGTCAAGCCTAAACCAAGTCTAGAAATTTCAATTTTTAAG
** * *
7229782 TCGAACCTGTT-TTGAGATAGGTTGAGTCTAGACCAAGTCTAGAAATTT
1 TCGAACCTGTTGTT-AGATAGGTCAAGCCTAAACCAAGTCTAGAAATTT
7229830 TTGTTTTTTT
Statistics
Matches: 96, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
58 2 0.02
59 45 0.47
60 40 0.42
62 9 0.09
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (59 bp):
TCGAACCTGTTGTTAGATAGGTCAAGCCTAAACCAAGTCTAGAAATTTCAATTTTTAAG
Found at i:7230570 original size:19 final size:21
Alignment explanation
Indices: 7230546--7230587 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
7230536 AAACCTCAAT
7230546 CCAC-AAAT-AAAAAAAATAC
1 CCACAAAATAAAAAAAAATAC
7230565 CCACAAAATACAAAAAAAATAC
1 CCACAAAATA-AAAAAAAATAC
7230587 C
1 C
7230588 AAAAATTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 4 0.20
20 4 0.20
22 12 0.60
ACGTcount: A:0.67, C:0.24, G:0.00, T:0.10
Consensus pattern (21 bp):
CCACAAAATAAAAAAAAATAC
Found at i:7230955 original size:17 final size:17
Alignment explanation
Indices: 7230933--7230972 Score: 80
Period size: 17 Copynumber: 2.4 Consensus size: 17
7230923 CGATGGCACT
7230933 GCCGGTTTTGGGTGGTG
1 GCCGGTTTTGGGTGGTG
7230950 GCCGGTTTTGGGTGGTG
1 GCCGGTTTTGGGTGGTG
7230967 GCCGGT
1 GCCGGT
7230973 GAAAAGGGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.00, C:0.15, G:0.53, T:0.33
Consensus pattern (17 bp):
GCCGGTTTTGGGTGGTG
Found at i:7231524 original size:15 final size:13
Alignment explanation
Indices: 7231496--7231540 Score: 54
Period size: 13 Copynumber: 3.3 Consensus size: 13
7231486 TTAAAAAGAT
7231496 ATAAAAATAAAAA
1 ATAAAAATAAAAA
7231509 ATAAAAATATAGAAA
1 ATAAAAATA-A-AAA
* *
7231524 ATAAATATAAATA
1 ATAAAAATAAAAA
7231537 ATAA
1 ATAA
7231541 TATACCATGA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 15 0.54
14 2 0.07
15 11 0.39
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (13 bp):
ATAAAAATAAAAA
Found at i:7233298 original size:15 final size:15
Alignment explanation
Indices: 7233272--7233309 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
7233262 AGAAAAAGTC
*
7233272 GAAGATGCTAATGAT
1 GAAGATGATAATGAT
*
7233287 GATGATGATAATGAT
1 GAAGATGATAATGAT
7233302 GAAGATGA
1 GAAGATGA
7233310 ATGAGAGATG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.42, C:0.03, G:0.29, T:0.26
Consensus pattern (15 bp):
GAAGATGATAATGAT
Found at i:7249435 original size:19 final size:19
Alignment explanation
Indices: 7249398--7249436 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
7249388 TTGAATCTTC
*
7249398 AATGGCCTACTTTTTATGT
1 AATGGCCTACTTTTCATGT
7249417 AATGGCCT-CTGTTTCATGT
1 AATGGCCTACT-TTTCATGT
7249436 A
1 A
7249437 TTAAAGCTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 2 0.11
19 16 0.89
ACGTcount: A:0.21, C:0.18, G:0.18, T:0.44
Consensus pattern (19 bp):
AATGGCCTACTTTTCATGT
Found at i:7253994 original size:25 final size:25
Alignment explanation
Indices: 7253927--7253995 Score: 68
Period size: 25 Copynumber: 2.7 Consensus size: 25
7253917 ATAGAAAAAA
7253927 ATGAAAATGTAATACAAATGTAAACAT
1 ATGAAAA--TAATACAAATGTAAACAT
* * *
7253954 ATGATAATAATCCAAATGTAAGCAT
1 ATGAAAATAATACAAATGTAAACAT
*
7253979 CT-AAAATAAATACAAAT
1 ATGAAAAT-AATACAAAT
7253996 CTCACTAAAG
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
24 4 0.11
25 25 0.71
27 6 0.17
ACGTcount: A:0.55, C:0.10, G:0.09, T:0.26
Consensus pattern (25 bp):
ATGAAAATAATACAAATGTAAACAT
Found at i:7254945 original size:16 final size:16
Alignment explanation
Indices: 7254910--7254953 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
7254900 GATTGGTTTA
* *
7254910 TTTACTATTATTTTATT
1 TTTAATATT-TTTAATT
7254927 TTTAATATTTTTAATT
1 TTTAATATTTTTAATT
7254943 TTTAAT-TTTTT
1 TTTAATATTTTT
7254954 CTTTATTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 5 0.20
16 12 0.48
17 8 0.32
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.73
Consensus pattern (16 bp):
TTTAATATTTTTAATT
Found at i:7263926 original size:2 final size:2
Alignment explanation
Indices: 7263919--7263954 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
7263909 ACTCATCACA
* *
7263919 CT CT CT CT CT CT CT GT CT CT CT GT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
7263955 GCTTAATCAT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.00, C:0.44, G:0.06, T:0.50
Consensus pattern (2 bp):
CT
Found at i:7264316 original size:22 final size:22
Alignment explanation
Indices: 7264291--7264332 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
7264281 TTGAAAAAAC
*
7264291 TAAAATATT-TTTTTTGTTAATT
1 TAAAAAATTATTTTTT-TTAATT
7264313 TAAAAAATTATTTTTTTTAA
1 TAAAAAATTATTTTTTTTAA
7264333 AAAAAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (22 bp):
TAAAAAATTATTTTTTTTAATT
Found at i:7265821 original size:24 final size:25
Alignment explanation
Indices: 7265782--7265830 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 25
7265772 GGGAACACGC
7265782 AAACAGTGCTCTCTAAGGAGAACCA
1 AAACAGTGCTCTCTAAGGAGAACCA
* *
7265807 AAACGGTGCTC-CTAAGGAGCACCA
1 AAACAGTGCTCTCTAAGGAGAACCA
7265831 TGTTGGGGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 12 0.55
25 10 0.45
ACGTcount: A:0.37, C:0.27, G:0.22, T:0.14
Consensus pattern (25 bp):
AAACAGTGCTCTCTAAGGAGAACCA
Found at i:7268981 original size:101 final size:101
Alignment explanation
Indices: 7268805--7269035 Score: 435
Period size: 101 Copynumber: 2.3 Consensus size: 101
7268795 AAGAAGTGGG
7268805 TTTAATTTCTGTGAAGTGTGGAAAGTGAATGTACATATTTTAATGTTATAATTCATCCGATCTTA
1 TTTAATTTCTGTGAAGTGTGGAAAGTGAATGTACATATTTTAATGTTATAATTCATCCGATCTTA
7268870 AGAACAGTATATACTTTGATTAGAGAGTATATATAC
66 AGAACAGTATATACTTTGATTAGAGAGTATATATAC
7268906 TTTAATTTCTGTGAAGTGTGGAAAGTGAATGTACATATTTTAATGTTATAATTCATCCGATCTTA
1 TTTAATTTCTGTGAAGTGTGGAAAGTGAATGTACATATTTTAATGTTATAATTCATCCGATCTTA
* *
7268971 CGAACGGTATATACTTTGATTAGAGAGTATATATAC
66 AGAACAGTATATACTTTGATTAGAGAGTATATATAC
7269007 TTTAATTTCTGTGAAGTGTGGGAAAGTGA
1 TTTAATTTCTGTGAAGTGT-GGAAAGTGA
7269036 GTATATATAC
Statistics
Matches: 127, Mismatches: 2, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
101 118 0.93
102 9 0.07
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.39
Consensus pattern (101 bp):
TTTAATTTCTGTGAAGTGTGGAAAGTGAATGTACATATTTTAATGTTATAATTCATCCGATCTTA
AGAACAGTATATACTTTGATTAGAGAGTATATATAC
Found at i:7274823 original size:12 final size:12
Alignment explanation
Indices: 7274796--7274853 Score: 55
Period size: 12 Copynumber: 4.7 Consensus size: 12
7274786 ATTATATAAA
*
7274796 ATAACATAACAAT
1 ATAAAATAA-AAT
*
7274809 ATAGAATAAAAT
1 ATAAAATAAAAT
7274821 ATAAAATAAAAGT
1 ATAAAATAAAA-T
7274834 A-ACAAATAAAAT
1 ATA-AAATAAAAT
*
7274846 AAAAAATA
1 ATAAAATA
7274854 GTGTCTACAA
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
12 21 0.54
13 18 0.46
ACGTcount: A:0.71, C:0.05, G:0.03, T:0.21
Consensus pattern (12 bp):
ATAAAATAAAAT
Found at i:7274825 original size:30 final size:30
Alignment explanation
Indices: 7274789--7274849 Score: 88
Period size: 30 Copynumber: 2.0 Consensus size: 30
7274779 CTATTGGATT
* *
7274789 ATATAAAATAACA-TAACAATATAGAATAAA
1 ATATAAAATAAAAGTAACAA-ATAAAATAAA
7274819 ATATAAAATAAAAGTAACAAATAAAATAAA
1 ATATAAAATAAAAGTAACAAATAAAATAAA
7274849 A
1 A
7274850 AATAGTGTCT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 22 0.79
31 6 0.21
ACGTcount: A:0.70, C:0.05, G:0.03, T:0.21
Consensus pattern (30 bp):
ATATAAAATAAAAGTAACAAATAAAATAAA
Found at i:7276841 original size:21 final size:21
Alignment explanation
Indices: 7276817--7276864 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
7276807 AGATACAATT
* *
7276817 TTCAAAACCTTTGAGTACATC
1 TTCAAAACCTTTGAGCACACC
*
7276838 TTCAACACCTTTGAGCACACC
1 TTCAAAACCTTTGAGCACACC
7276859 TTCAAA
1 TTCAAA
7276865 TCCTCTAAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.33, C:0.29, G:0.08, T:0.29
Consensus pattern (21 bp):
TTCAAAACCTTTGAGCACACC
Found at i:7277136 original size:22 final size:22
Alignment explanation
Indices: 7277109--7277172 Score: 85
Period size: 22 Copynumber: 3.0 Consensus size: 22
7277099 CAAAACTTCC
7277109 AAGTACAATATTGAAAACCTTT
1 AAGTACAATATTGAAAACCTTT
* *
7277131 AGGTACAATCTTGAAAACCTTT
1 AAGTACAATATTGAAAACCTTT
* *
7277153 AAGTACACTA-TCAAAACCTT
1 AAGTACAATATTGAAAACCTT
7277173 CGAGTAACCA
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
21 9 0.25
22 27 0.75
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (22 bp):
AAGTACAATATTGAAAACCTTT
Found at i:7280622 original size:22 final size:22
Alignment explanation
Indices: 7280597--7280649 Score: 88
Period size: 22 Copynumber: 2.4 Consensus size: 22
7280587 GTTGTATTAT
*
7280597 GAGGTTTTACAAAATGTACTTG
1 GAGGTTTTACAAAATGAACTTG
*
7280619 GAGGTTTTATAAAATGAACTTG
1 GAGGTTTTACAAAATGAACTTG
7280641 GAGGTTTTA
1 GAGGTTTTA
7280650 GATAGTCTAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.32, C:0.06, G:0.25, T:0.38
Consensus pattern (22 bp):
GAGGTTTTACAAAATGAACTTG
Found at i:7280661 original size:22 final size:22
Alignment explanation
Indices: 7280597--7280671 Score: 69
Period size: 22 Copynumber: 3.4 Consensus size: 22
7280587 GTTGTATTAT
* *
7280597 GAGGTTTTACAAAATGTACTTG
1 GAGGTTTTAGAAAATCTACTTG
* **
7280619 GAGGTTTTATAAAATGAACTTG
1 GAGGTTTTAGAAAATCTACTTG
* *
7280641 GAGGTTTTAGATAGTCTACTTG
1 GAGGTTTTAGAAAATCTACTTG
* *
7280663 AAGGGTTTA
1 GAGGTTTTA
7280672 AATCTTAGCA
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 44 1.00
ACGTcount: A:0.31, C:0.07, G:0.25, T:0.37
Consensus pattern (22 bp):
GAGGTTTTAGAAAATCTACTTG
Found at i:7283928 original size:27 final size:27
Alignment explanation
Indices: 7283820--7283928 Score: 78
Period size: 27 Copynumber: 3.9 Consensus size: 27
7283810 TTAATCATAA
* * *
7283820 TAATATTT-AAATTAAATACAAAATAT
1 TAATATTTAAAATAAAATATAAATTAT
**
7283846 TAATATTTTAAAATATTAAAATTATAGTTTAT
1 TAATA-TTT-AAA-A-TAAAA-TATAAATTAT
* * *
7283878 CAATATTTTAAATAAATTATAAATTAT
1 TAATATTTAAAATAAAATATAAATTAT
7283905 TAATATTTAAAAATAAAATA-AAAT
1 TAATATTT-AAAATAAAATATAAAT
7283929 AAAAATAGCT
Statistics
Matches: 63, Mismatches: 13, Indels: 13
0.71 0.15 0.15
Matches are distributed among these distances:
26 5 0.08
27 22 0.35
28 13 0.21
29 3 0.05
30 3 0.05
31 7 0.11
32 10 0.16
ACGTcount: A:0.55, C:0.02, G:0.01, T:0.42
Consensus pattern (27 bp):
TAATATTTAAAATAAAATATAAATTAT
Found at i:7284095 original size:42 final size:42
Alignment explanation
Indices: 7284047--7284128 Score: 119
Period size: 42 Copynumber: 2.0 Consensus size: 42
7284037 ATAATAATAT
* * * *
7284047 TTAAATTATAAGTAAAATATTTATATTTTAAAATATTAATTA
1 TTAAATTATAAATAAAAGATTAATATTTAAAAATATTAATTA
*
7284089 TTAAATTATAAATAAAAGATTAATATTTAAAAATGTTAAT
1 TTAAATTATAAATAAAAGATTAATATTTAAAAATATTAAT
7284129 ATTTAAGTTA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.44
Consensus pattern (42 bp):
TTAAATTATAAATAAAAGATTAATATTTAAAAATATTAATTA
Found at i:7284235 original size:272 final size:261
Alignment explanation
Indices: 7283795--7284562 Score: 877
Period size: 272 Copynumber: 2.9 Consensus size: 261
7283785 AAAATTACTC
* * * *
7283795 AAAATTATTAATATTTTAATCATAAT-AAT-ATTTAAATTA-AATACAAAATATTAATATTTTAA
1 AAAA-TATTAATATTTTAA-AAT-ATCAATGA-TTAAATTATAA-ATAAAAGATTAATATTTAAA
* ** * * *
7283857 AATATTAAAATTATAGTTTATCAATATTTTAAATAAATTATAAATTATTAATATTTAAAAATAAA
61 AATTTTAAAATTA-AAATTATTAACATTTTAAATGAATTATAAATTATTAATATTTAAAAATAAA
*
7283922 ATAAAATAAAAATAGCTAATCAT-ATTATAATAAAAAGTTTAAGTTTCTAATTATATATTATAGA
125 ATAAAATAAAAATAGATAATCATAATTATAATAAAAAGTTTAAGTTT-TAATTATATATTATA-A
* * *
7283986 AAATTAATATTTTCAATTTAAAATTTAATTAAAATTATTAAAATGTCAATCATAATAATATTTAA
188 AAATTAATATTTTAAATTTAAAATTGAATTAAAATTATTAAAATGTCAATCATAATAATAGTTAA
*
7284051 ATTATAAGT
253 ATTATAAAT
* * *
7284060 AAAATATTTATATTTTAAAATATTAATTATTAAATTATAAATAAAAGATTAATATTTAAAAATGT
1 AAAATATTAATATTTTAAAATATCAATGATTAAATTATAAATAAAAGATTAATATTTAAAAAT-T
* * *
7284125 TAATATTTAAGTTAAAAATTATTAA-ATTTTTAAATGAATTATCAATTATTAATATTTAAAAAAG
65 T--TA---AAATT-AAAATTATTAACA-TTTTAAATGAATTATAAATTATTAATATTT-AAAAAT
* *
7284189 AAAATAAAATGAAAATAGAAAATCATACATTATAATAAAAAGTTTAAGTGTTTAATTATATATTA
122 AAAATAAAATAAAAATAGATAATCATA-ATTATAATAAAAAGTTTAAGT-TTTAATTATATATTA
* * * * *
7284254 TAAAAAATTAATATTTTAAAATTCAAAA-TGAATTAAAATTATTAATATTTTAATCATAGTAATA
185 T-AAAAATTAATATTTT-AAATTTAAAATTGAATTAAAATTATTAAAATGTCAATCATAATAATA
7284318 GTTAAATTATAAAT
248 GTTAAATTATAAAT
* * * *
7284332 AAAATATTAATATTTTAAAATATCAATGATTAAATTATAAATAAAATATTACTTTTTTAAAATTT
1 AAAATATTAATATTTTAAAATATCAATGATTAAATTATAAATAAAAGATTAATATTTAAAAATTT
* *
7284397 TAAAATTTAAATTATTAACAATTTAAA-GAAATTATAAATTATT-ATGATTTAAAAATAAAATAA
66 TAAAATTAAAATTATTAACATTTTAAATG-AATTATAAATTATTAAT-ATTTAAAAATAAAATAA
* * * * *
7284460 AATAAAAATAGATAATGATATATTGTAATGAAAAGGTTAAGTTTTTAATTATATATTATAAAATT
129 AATAAAAATAGATAATCATA-ATTATAATAAAAAGTTTAAG-TTTTAATTATATATTATAAAA-A
**
7284525 TTAATATTTTAAATTTAAAATTGAAAGAAAATTATTAA
191 TTAATATTTTAAATTTAAAATTGAATTAAAATTATTAA
7284563 TATTTAAAGA
Statistics
Matches: 432, Mismatches: 48, Indels: 47
0.82 0.09 0.09
Matches are distributed among these distances:
262 2 0.00
263 46 0.11
264 107 0.25
265 38 0.09
266 7 0.02
268 1 0.00
269 41 0.09
270 29 0.07
271 2 0.00
272 148 0.34
273 11 0.03
ACGTcount: A:0.52, C:0.02, G:0.04, T:0.41
Consensus pattern (261 bp):
AAAATATTAATATTTTAAAATATCAATGATTAAATTATAAATAAAAGATTAATATTTAAAAATTT
TAAAATTAAAATTATTAACATTTTAAATGAATTATAAATTATTAATATTTAAAAATAAAATAAAA
TAAAAATAGATAATCATAATTATAATAAAAAGTTTAAGTTTTAATTATATATTATAAAAATTAAT
ATTTTAAATTTAAAATTGAATTAAAATTATTAAAATGTCAATCATAATAATAGTTAAATTATAAA
T
Found at i:7284273 original size:16 final size:17
Alignment explanation
Indices: 7284242--7284274 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
7284232 TTAAGTGTTT
7284242 AATTATATATTATAAAA
1 AATTATATATTATAAAA
*
7284259 AATTA-ATATTTTAAAA
1 AATTATATATTATAAAA
7284275 TTCAAAATGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (17 bp):
AATTATATATTATAAAA
Found at i:7284374 original size:42 final size:42
Alignment explanation
Indices: 7284287--7284394 Score: 139
Period size: 42 Copynumber: 2.5 Consensus size: 42
7284277 CAAAATGAAT
*
7284287 TAAAATTATTAATATTTTAATCATAGTAATAGTTAAATTATAAA
1 TAAAA-TATTAATATTTTAA-AATAGTAATAGTTAAATTATAAA
7284331 TAAAATATTAATATTTTAAAATA-TCAAT-GATTAAATTATAAA
1 TAAAATATTAATATTTTAAAATAGT-AATAG-TTAAATTATAAA
* *
7284373 TAAAATATTACTTTTTTAAAAT
1 TAAAATATTAATATTTTAAAAT
7284395 TTTAAAATTT
Statistics
Matches: 59, Mismatches: 3, Indels: 6
0.87 0.04 0.09
Matches are distributed among these distances:
41 2 0.03
42 38 0.64
43 14 0.24
44 5 0.08
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.44
Consensus pattern (42 bp):
TAAAATATTAATATTTTAAAATAGTAATAGTTAAATTATAAA
Found at i:7284407 original size:42 final size:42
Alignment explanation
Indices: 7284287--7284411 Score: 137
Period size: 42 Copynumber: 2.9 Consensus size: 42
7284277 CAAAATGAAT
* *
7284287 TAAAATTATTAATATTTTAATCATAGT-AATAGTTAAATTATAAA
1 TAAAA-TATTAATATTTTAA-AATA-TCAATAATTAAATTATAAA
*
7284331 TAAAATATTAATATTTTAAAATATCAATGATTAAATTATAAA
1 TAAAATATTAATATTTTAAAATATCAATAATTAAATTATAAA
* * * *
7284373 TAAAATATTACTTTTTTAAAATTTTAA-AATTTAAATTAT
1 TAAAATATTAATATTTTAAAATATCAATAA-TTAAATTAT
7284412 TAACAATTTA
Statistics
Matches: 71, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
41 2 0.03
42 50 0.70
43 14 0.20
44 5 0.07
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.45
Consensus pattern (42 bp):
TAAAATATTAATATTTTAAAATATCAATAATTAAATTATAAA
Found at i:7284581 original size:19 final size:19
Alignment explanation
Indices: 7284535--7284589 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
7284525 TTAATATTTT
* *
7284535 AAAT-TTAAAATTGAAAGA
1 AAATATTAATATTTAAAGA
7284553 AAATTATTAATATTTAAAGA
1 AAA-TATTAATATTTAAAGA
7284573 AAATATTAATATTTAAA
1 AAATATTAATATTTAAA
7284590 AATGTTAATA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
18 3 0.09
19 15 0.45
20 15 0.45
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.36
Consensus pattern (19 bp):
AAATATTAATATTTAAAGA
Done.