Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19593398
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 1222752 characters in sequence are not A, C, G, or T
File 16 of 50
Found at i:7914092 original size:23 final size:22
Alignment explanation
Indices: 7914057--7914100 Score: 54
Period size: 24 Copynumber: 2.0 Consensus size: 22
7914047 GTATATGTAG
*
7914057 CCAATAGTGTGTAAGATATCAACT
1 CCAATAGTCTGTAA-AT-TCAACT
7914081 CCAATAG-CTGTAAATTCAAC
1 CCAATAGTCTGTAAATTCAAC
7914101 AAACATCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 5 0.26
22 2 0.11
23 5 0.26
24 7 0.37
ACGTcount: A:0.39, C:0.20, G:0.14, T:0.27
Consensus pattern (22 bp):
CCAATAGTCTGTAAATTCAACT
Found at i:7933743 original size:55 final size:54
Alignment explanation
Indices: 7933562--7933898 Score: 202
Period size: 55 Copynumber: 6.2 Consensus size: 54
7933552 TATATTTTGC
* * *
7933562 TACATGCCATGTTGAAAACA-ATT-TGT-TT-CACGTCATGTTAAAAAAATATTATTTT
1 TACATGCCATTTTGAAAA-ATATTGT-TATTACACGTCATGTTCAAAAAATGTTA---T
* * * * * * * * *
7933617 TACATACCATGTT-AAAAAAAATATTATTACACGTCATTTTGGAAAAAATATTGT
1 TACATGCCATTTTGAAAAATATTGTTATTACACGTCATGTT-CAAAAAATGTTAT
* * * * *
7933671 TATACGCCATGTTGAAAAATGTTGTTATTACACGTCATGCTCAAAAAATGTTAT
1 TACATGCCATTTTGAAAAATATTGTTATTACACGTCATGTTCAAAAAATGTTAT
* * * * * * *
7933725 TATATGCTATTTTGGAAAAAAAATATTATTACACGTCATGTT-AAAAAAGGTTGT
1 TACATGCCATTTT-GAAAAATATTGTTATTACACGTCATGTTCAAAAAATGTTAT
* * * * * * *
7933779 TACATACCATACTAGAAAAATATTGTTGTTACACGCCATGTTCAAAAAATTTTAC
1 TACATGCCAT-TTTGAAAAATATTGTTATTACACGTCATGTTCAAAAAATGTTAT
* * * * * *
7933834 TACATGCCATTTTGAATAA-ATTGTTGTTACACGTTATGTTAAAAAAAAATATTGT
1 TACATGCCATTTTGAAAAATATTGTTATTACACGTCATGTT--CAAAAAATGTTAT
7933889 TACATGCCAT
1 TACATGCCAT
7933899 GTTAAGAAAA
Statistics
Matches: 220, Mismatches: 51, Indels: 22
0.75 0.17 0.08
Matches are distributed among these distances:
53 20 0.09
54 84 0.38
55 96 0.44
56 10 0.05
57 10 0.05
ACGTcount: A:0.39, C:0.13, G:0.12, T:0.36
Consensus pattern (54 bp):
TACATGCCATTTTGAAAAATATTGTTATTACACGTCATGTTCAAAAAATGTTAT
Found at i:7933772 original size:29 final size:27
Alignment explanation
Indices: 7933590--7933772 Score: 118
Period size: 27 Copynumber: 6.6 Consensus size: 27
7933580 CAATTTGTTT
*
7933590 CACGTCATGTTAAAAAAATATTATTTTTA
1 CACGTCATGTTAAAAAAA-A-TATTATTA
***
7933619 CATACCATGTTAAAAAAAATATTATTA
1 CACGTCATGTTAAAAAAAATATTATTA
* ** *
7933646 CACGTCATTTTGGAAAAAATATTGTTA
1 CACGTCATGTTAAAAAAAATATTATTA
* * *** *
7933673 TACGCCATGTTGAAAAATGTTGTTATTA
1 CACGTCATGTT-AAAAAAAATATTATTA
* * *
7933701 CACGTCATGCT-CAAAAAATGTTATTA
1 CACGTCATGTTAAAAAAAATATTATTA
* * *
7933727 TATG-CTATTTTGGAAAAAAAATATTATTA
1 CACGTC-ATGTT--AAAAAAAATATTATTA
7933756 CACGTCATGTTAAAAAA
1 CACGTCATGTTAAAAAA
7933773 GGTTGTTACA
Statistics
Matches: 111, Mismatches: 37, Indels: 14
0.69 0.23 0.09
Matches are distributed among these distances:
25 1 0.01
26 16 0.14
27 41 0.37
28 18 0.16
29 34 0.31
30 1 0.01
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.36
Consensus pattern (27 bp):
CACGTCATGTTAAAAAAAATATTATTA
Found at i:7933881 original size:109 final size:109
Alignment explanation
Indices: 7933630--7933879 Score: 272
Period size: 109 Copynumber: 2.3 Consensus size: 109
7933620 ATACCATGTT
* ** * ** * * *
7933630 AAAAAAAATATTATTACACGTCATTTTGGAAAAAATATTGTTATACGCCAT-GTTGAAAAATGTT
1 AAAAAAAATATTATTACACGTCATGTT--AAAAAAGGTTGTTACATACCATACTAGAAAAATATT
* * * *
7933694 GTTATTACACGTCATGCTCAAAAAATGTTATTATATGCTATTTTGG
64 GTTATTACACGCCATGCTCAAAAAATGTTACTACATGCCATTTTGG
7933740 AAAAAAAATATTATTACACGTCATGTTAAAAAAGGTTGTTACATACCATACTAGAAAAATATTGT
1 AAAAAAAATATTATTACACGTCATGTTAAAAAAGGTTGTTACATACCATACTAGAAAAATATTGT
* * *
7933805 TGTTACACGCCATGTTCAAAAAATTTTACTACATGCCATTTT-G
66 TATTACACGCCATGCTCAAAAAATGTTACTACATGCCATTTTGG
* * * * *
7933848 -AATAAATTGTTGTTACACGTTATGTTAAAAAA
1 AAAAAAAATATTATTACACGTCATGTTAAAAAA
7933880 AAATATTGTT
Statistics
Matches: 118, Mismatches: 21, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
107 27 0.23
108 18 0.15
109 47 0.40
110 26 0.22
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.36
Consensus pattern (109 bp):
AAAAAAAATATTATTACACGTCATGTTAAAAAAGGTTGTTACATACCATACTAGAAAAATATTGT
TATTACACGCCATGCTCAAAAAATGTTACTACATGCCATTTTGG
Found at i:7935029 original size:33 final size:33
Alignment explanation
Indices: 7934986--7935051 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
7934976 CCCCGAAAAA
* * *
7934986 CATCTCCTCTCTCAGCCGACCTTCCCCTGTCTT
1 CATCTACTCTCTCAACCGACCTTCCCCTATCTT
*
7935019 CATCTACTCTCTCAACCGATCTTCCCCTATCTT
1 CATCTACTCTCTCAACCGACCTTCCCCTATCTT
7935052 TCGTCCTCTC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.14, C:0.45, G:0.06, T:0.35
Consensus pattern (33 bp):
CATCTACTCTCTCAACCGACCTTCCCCTATCTT
Found at i:7935599 original size:133 final size:133
Alignment explanation
Indices: 7935342--7935600 Score: 301
Period size: 133 Copynumber: 1.9 Consensus size: 133
7935332 TTATATCAAT
*
7935342 TAATAAATTATTAATTTTTAATGAAAATAAAAATTAAAAGATTAAAAAATAAAAAAATACAAATA
1 TAATAAATTATTAATGTTTAATGAAAATAAAAATTAAAAGATTAAAAAATAAAAAAATACAAATA
* * *
7935407 GAGAAAAATACTCAAATAATGAAAGTAAAAATTATATAACTATTTATATATAAGTATTATTATAA
66 GAGAAAAATACTCAAATAATAAAAGTAAAAATCATAAAACTATTTATATATAAG-ATTATTATAA
7935472 TTTA
130 TTTA
* ** * * * *
7935476 TAATAAATT-TTGATGTTTAATGAAAATGTAAATTAAAAGGTTAAGACAT-GAAAAATACAAATA
1 TAATAAATTATTAATGTTTAATGAAAATAAAAATTAAAAGATTAAAAAATAAAAAAATACAAATA
** ** *
7935539 GAGAAAAATGGGTCAAATTGTTAAAATTAAAAATCATAAAACTAATTTA-ATAATAA-ATTATT
66 GAGAAAAAT-ACTCAAA-TAATAAAAGTAAAAATCATAAAACT-ATTTATAT-ATAAGATTATT
7935601 GATATAAAAA
Statistics
Matches: 105, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
132 22 0.21
133 44 0.42
134 30 0.29
135 9 0.09
ACGTcount: A:0.56, C:0.03, G:0.08, T:0.33
Consensus pattern (133 bp):
TAATAAATTATTAATGTTTAATGAAAATAAAAATTAAAAGATTAAAAAATAAAAAAATACAAATA
GAGAAAAATACTCAAATAATAAAAGTAAAAATCATAAAACTATTTATATATAAGATTATTATAAT
TTA
Found at i:7941260 original size:16 final size:16
Alignment explanation
Indices: 7941220--7941260 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
7941210 CTAATAGAGA
*
7941220 TGACGTGGCATAATAT
1 TGACGTGGCACAATAT
7941236 TGA-GATGGCACAATAT
1 TGACG-TGGCACAATAT
7941252 TGACGTGGC
1 TGACGTGGC
7941261 TCATCTTTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 1 0.05
16 20 0.91
17 1 0.05
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.27
Consensus pattern (16 bp):
TGACGTGGCACAATAT
Found at i:7942103 original size:81 final size:81
Alignment explanation
Indices: 7941968--7942129 Score: 297
Period size: 81 Copynumber: 2.0 Consensus size: 81
7941958 AATCTTGAAG
*
7941968 CACTTATATAGTGTAAGCCTCCAAAGGTTACTGGGGGAAAGCTACTCGCTTGTGGTTATTAGGGA
1 CACTTATATAGTGTAAGCCTCCAAAGGTTACTGGGGGAAAACTACTCGCTTGTGGTTATTAGGGA
7942033 ATTGCACGACACTTTA
66 ATTGCACGACACTTTA
*
7942049 CACTTATATAGTGTAAGCCTCCAAAGGTTACTGGGGGAAAACTACTTGCTTGTGGTTATTAGGGA
1 CACTTATATAGTGTAAGCCTCCAAAGGTTACTGGGGGAAAACTACTCGCTTGTGGTTATTAGGGA
*
7942114 ATTGCATGACACTTTA
66 ATTGCACGACACTTTA
7942130 ATTACCTTGG
Statistics
Matches: 78, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
81 78 1.00
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (81 bp):
CACTTATATAGTGTAAGCCTCCAAAGGTTACTGGGGGAAAACTACTCGCTTGTGGTTATTAGGGA
ATTGCACGACACTTTA
Found at i:7943550 original size:18 final size:18
Alignment explanation
Indices: 7943515--7943552 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
7943505 TACCACTTAT
* *
7943515 CATTTTATATTTATATGA
1 CATTTTATATTCAAATGA
7943533 CATTTTATATTCAAATGA
1 CATTTTATATTCAAATGA
7943551 CA
1 CA
7943553 CTAACATGAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.37, C:0.11, G:0.05, T:0.47
Consensus pattern (18 bp):
CATTTTATATTCAAATGA
Found at i:7943782 original size:30 final size:30
Alignment explanation
Indices: 7943748--7943808 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
7943738 ATAATTAATC
7943748 ATAAAGACTTATTTAACTCAAAATAAAAAT
1 ATAAAGACTTATTTAACTCAAAATAAAAAT
* *
7943778 ATAAAGACTTATTTAATTCAAAATGAAAAT
1 ATAAAGACTTATTTAACTCAAAATAAAAAT
7943808 A
1 A
7943809 CACAAATTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.56, C:0.08, G:0.05, T:0.31
Consensus pattern (30 bp):
ATAAAGACTTATTTAACTCAAAATAAAAAT
Found at i:7944345 original size:30 final size:30
Alignment explanation
Indices: 7944311--7944371 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
7944301 ATAATTAATC
*
7944311 ATAAAAAATTATTTATTTCAAAATAAAAAT
1 ATAAAAAATTATTTAATTCAAAATAAAAAT
* * *
7944341 ATAAAGACTTATTTAATTCAAAATGAAAAT
1 ATAAAAAATTATTTAATTCAAAATAAAAAT
7944371 A
1 A
7944372 CACAAATTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.57, C:0.05, G:0.03, T:0.34
Consensus pattern (30 bp):
ATAAAAAATTATTTAATTCAAAATAAAAAT
Found at i:7944602 original size:563 final size:562
Alignment explanation
Indices: 7943536--7944660 Score: 2178
Period size: 563 Copynumber: 2.0 Consensus size: 562
7943526 TATATGACAT
* *
7943536 TTTATATTCAAATGACACTAACATGACATTAATGTGTAATGTGAAAAATGTCACATGATCATATT
1 TTTATATCCAAATAACACTAACATGACATTAATGTGTAATGTGAAAAATGTCACATGATCATATT
7943601 ATCATGCCAAATTACCATGTCACGTCATTATCAATTATGATCAGTCCACATGTCATATTATTATC
66 ATCATGCCAAATTACCATGTCACGTCATTATCAATTATGATCAGTCCACATGTCATATTATTATC
7943666 AATTATTATATGTTAATATGTTATGTCAGCGTCACATGGTATACGATGACAAATGATATTTTAAT
131 AATTATTATATGTTAATATGTTATGTCAGCGTCACATGGTATACGATGACAAATGATATTTTAAT
* *
7943731 TAAATCAATAATTAATCATAAAGACTTATTTAACTCAAAATAAAAATATAAAGACTTATTTAATT
196 TAAATCAATAATTAATCATAAAAAATTATTTAACTCAAAATAAAAATATAAAGACTTATTTAATT
7943796 CAAAATGAAAATACACAAATTTAAACGCAAAAAAAAAAATATAAAAGTTTACTTGAATTTCCCTG
261 CAAAATGAAAATACACAAATTTAAACGCAAAAAAAAAAATATAAAAGTTTACTTGAATTTCCCTG
7943861 AATAGTTTAGAGAATTTTTTTTTTTAATAGAGAGACCTTAAACTATTGCTATTAGCAGGAAAAAT
326 AATAGTTTAGAGAATTTTTTTTTTTAATAGAGAGACCTTAAACTATTGCTATTAGCAGGAAAAAT
7943926 GTAAATTGTGTCAAATGTGCATGCCATCAACAATATATTTTTAAAAGCAAGAAAAAAAAATAGAA
391 GTAAATTGTGTCAAATGTGCATGCCATCAACAATATATTTTTAAAAGCAAGAAAAAAAAATAGAA
7943991 AAGAGGGCAATTTAAGATGACAAAAGATTGGCTACTCAAGACGCAAACAAATACAAGTATTTATC
456 AAGAGGGCAATTTAAGATGACAAAAGATTGGCTACTCAAGACGCAAACAAATACAAGTATTTATC
7944056 AATTTTAAAATTCCAACTTCAATCTCTTCATCCTTTCTTTCA
521 AATTTTAAAATTCCAACTTCAATCTCTTCATCCTTTCTTTCA
*
7944098 NTTTATATCCACATAACACTAACATGACATTAATGTGTAATGTGAAAAATGTCACATGATCATAT
1 -TTTATATCCAAATAACACTAACATGACATTAATGTGTAATGTGAAAAATGTCACATGATCATAT
7944163 TATCATGCCAAATTACCATGTCACGTCATTATCAATTATGATCAGTCCACATGTCATATTATTAT
65 TATCATGCCAAATTACCATGTCACGTCATTATCAATTATGATCAGTCCACATGTCATATTATTAT
7944228 CAATTATTATATGTTAATATGTTATGTCAGCGTCACATGGTATACGATGACAAATGATATTTTAA
130 CAATTATTATATGTTAATATGTTATGTCAGCGTCACATGGTATACGATGACAAATGATATTTTAA
**
7944293 TTAAATCAATAATTAATCATAAAAAATTATTTATTTCAAAATAAAAATATAAAGACTTATTTAAT
195 TTAAATCAATAATTAATCATAAAAAATTATTTAACTCAAAATAAAAATATAAAGACTTATTTAAT
7944358 TCAAAATGAAAATACACAAATTTAAACGCAAAAAAAAAAATATAAAAGTTTACTTGAATTTCCCT
260 TCAAAATGAAAATACACAAATTTAAACGCAAAAAAAAAAATATAAAAGTTTACTTGAATTTCCCT
7944423 GAATAGTTTAGAGAATTTTTTTTTTTAATAGAGAGACCTTAAACTATTGCTATTAGCAGGAAAAA
325 GAATAGTTTAGAGAATTTTTTTTTTTAATAGAGAGACCTTAAACTATTGCTATTAGCAGGAAAAA
7944488 TGTAAATTGTGTCAAATGTGCATGCCATCAACAATATATTTTTAAAAGCAAGAAAAAAAAATAGA
390 TGTAAATTGTGTCAAATGTGCATGCCATCAACAATATATTTTTAAAAGCAAGAAAAAAAAATAGA
7944553 AAAGAGGGCAATTTAAGATGACAAAAGATTGGCTACTCAAGACGCAAACAAATACAAGTATTTAT
455 AAAGAGGGCAATTTAAGATGACAAAAGATTGGCTACTCAAGACGCAAACAAATACAAGTATTTAT
7944618 CAATTTTAAAATTCCAACTTCAATCTCTTCATCCTTTCTTTCA
520 CAATTTTAAAATTCCAACTTCAATCTCTTCATCCTTTCTTTCA
7944661 GGATGTGGAA
Statistics
Matches: 555, Mismatches: 7, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
563 555 1.00
ACGTcount: A:0.42, C:0.14, G:0.11, T:0.33
Consensus pattern (562 bp):
TTTATATCCAAATAACACTAACATGACATTAATGTGTAATGTGAAAAATGTCACATGATCATATT
ATCATGCCAAATTACCATGTCACGTCATTATCAATTATGATCAGTCCACATGTCATATTATTATC
AATTATTATATGTTAATATGTTATGTCAGCGTCACATGGTATACGATGACAAATGATATTTTAAT
TAAATCAATAATTAATCATAAAAAATTATTTAACTCAAAATAAAAATATAAAGACTTATTTAATT
CAAAATGAAAATACACAAATTTAAACGCAAAAAAAAAAATATAAAAGTTTACTTGAATTTCCCTG
AATAGTTTAGAGAATTTTTTTTTTTAATAGAGAGACCTTAAACTATTGCTATTAGCAGGAAAAAT
GTAAATTGTGTCAAATGTGCATGCCATCAACAATATATTTTTAAAAGCAAGAAAAAAAAATAGAA
AAGAGGGCAATTTAAGATGACAAAAGATTGGCTACTCAAGACGCAAACAAATACAAGTATTTATC
AATTTTAAAATTCCAACTTCAATCTCTTCATCCTTTCTTTCA
Found at i:7956796 original size:3 final size:3
Alignment explanation
Indices: 7956788--7956821 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
7956778 AAACGATCTT
7956788 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
7956822 GATTTCTGTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:7957348 original size:14 final size:15
Alignment explanation
Indices: 7957312--7957356 Score: 60
Period size: 14 Copynumber: 3.2 Consensus size: 15
7957302 GTGTTGTATA
*
7957312 ATTTAAAAATT-AAT
1 ATTTTAAAATTAAAT
7957326 ATTTT-AAATTAAAT
1 ATTTTAAAATTAAAT
7957340 -TTTTAAAATTAAAT
1 ATTTTAAAATTAAAT
7957354 ATT
1 ATT
7957357 AATATTTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
13 9 0.33
14 16 0.59
15 2 0.07
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (15 bp):
ATTTTAAAATTAAAT
Found at i:7963041 original size:14 final size:16
Alignment explanation
Indices: 7963011--7963048 Score: 62
Period size: 14 Copynumber: 2.5 Consensus size: 16
7963001 AGCTATCAAA
7963011 TTAACATTTTAAAGTT
1 TTAACATTTTAAAGTT
7963027 TTAAC-TTTT-AAGTT
1 TTAACATTTTAAAGTT
7963041 TTAACATT
1 TTAACATT
7963049 CAAGATAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 10 0.48
15 6 0.29
16 5 0.24
ACGTcount: A:0.34, C:0.08, G:0.05, T:0.53
Consensus pattern (16 bp):
TTAACATTTTAAAGTT
Found at i:7972113 original size:26 final size:26
Alignment explanation
Indices: 7972079--7972256 Score: 102
Period size: 26 Copynumber: 7.0 Consensus size: 26
7972069 TTACGATATT
* *
7972079 CATCCACTTTTAGTGGTAAAATTATC
1 CATCTACTTCTAGTGGTAAAATTATC
* * *
7972105 CATCTACTTTTGGTGGCAAAATTATC
1 CATCTACTTCTAGTGGTAAAATTATC
* **
7972131 CAT-TCACTTCTGGTGACAAAATTATC
1 CATCT-ACTTCTAGTGGTAAAATTATC
* * *
7972157 C-T-TAGATTCTAATAGTAAAATTATC
1 CATCTA-CTTCTAGTGGTAAAATTATC
* *
7972182 CATCCACTTCT-GATGGTAAAATTATT
1 CATCTACTTCTAG-TGGTAAAATTATC
*
7972208 C-T-TAGATTCT-GATGGTAAAATTAT-
1 CATCTA-CTTCTAG-TGGTAAAATTATC
* * *
7972232 TATCCACTTCTGGTGGTAAAATTAT
1 CATCTACTTCTAGTGGTAAAATTAT
7972257 AATTAGAATT
Statistics
Matches: 122, Mismatches: 21, Indels: 19
0.75 0.13 0.12
Matches are distributed among these distances:
24 2 0.02
25 54 0.44
26 65 0.53
27 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.39
Consensus pattern (26 bp):
CATCTACTTCTAGTGGTAAAATTATC
Found at i:7972190 original size:51 final size:51
Alignment explanation
Indices: 7972122--7972256 Score: 191
Period size: 51 Copynumber: 2.7 Consensus size: 51
7972112 TTTTGGTGGC
* **
7972122 AAAATTATCCATTCACTTCTGGTGACAAAATTATCCTTAGATTCTAATAGT
1 AAAATTATCCATCCACTTCTGGTGGTAAAATTATCCTTAGATTCTAATAGT
* * * *
7972173 AAAATTATCCATCCACTTCTGATGGTAAAATTATTCTTAGATTCTGATGGT
1 AAAATTATCCATCCACTTCTGGTGGTAAAATTATCCTTAGATTCTAATAGT
*
7972224 AAAATTAT-TATCCACTTCTGGTGGTAAAATTAT
1 AAAATTATCCATCCACTTCTGGTGGTAAAATTAT
7972257 AATTAGAATT
Statistics
Matches: 75, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
50 23 0.31
51 52 0.69
ACGTcount: A:0.34, C:0.16, G:0.12, T:0.39
Consensus pattern (51 bp):
AAAATTATCCATCCACTTCTGGTGGTAAAATTATCCTTAGATTCTAATAGT
Found at i:7972232 original size:25 final size:25
Alignment explanation
Indices: 7972148--7972231 Score: 105
Period size: 25 Copynumber: 3.3 Consensus size: 25
7972138 TTCTGGTGAC
* *
7972148 AAAATTATCCTTAGATTCTAATAGT
1 AAAATTATCCTTAGATTCTGATGGT
* **
7972173 AAAATTATCCATCCACTTCTGATGGT
1 AAAATTATCCTTAGA-TTCTGATGGT
*
7972199 AAAATTATTCTTAGATTCTGATGGT
1 AAAATTATCCTTAGATTCTGATGGT
7972224 AAAATTAT
1 AAAATTAT
7972232 TATCCACTTC
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
25 30 0.61
26 19 0.39
ACGTcount: A:0.37, C:0.13, G:0.11, T:0.39
Consensus pattern (25 bp):
AAAATTATCCTTAGATTCTGATGGT
Found at i:7972242 original size:25 final size:25
Alignment explanation
Indices: 7972171--7972256 Score: 102
Period size: 25 Copynumber: 3.4 Consensus size: 25
7972161 GATTCTAATA
*
7972171 GTAAAATTATCCATCCACTTCTGATG
1 GTAAAATTAT-TATCCACTTCTGATG
* * *
7972197 GTAAAATTATTCT-TAGATTCTGATG
1 GTAAAATTATTATCCA-CTTCTGATG
*
7972222 GTAAAATTATTATCCACTTCTGGTG
1 GTAAAATTATTATCCACTTCTGATG
7972247 GTAAAATTAT
1 GTAAAATTAT
7972257 AATTAGAATT
Statistics
Matches: 50, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
24 1 0.02
25 38 0.76
26 11 0.22
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.40
Consensus pattern (25 bp):
GTAAAATTATTATCCACTTCTGATG
Found at i:7973531 original size:2 final size:2
Alignment explanation
Indices: 7973524--7973594 Score: 142
Period size: 2 Copynumber: 35.5 Consensus size: 2
7973514 CAACTGGTCA
7973524 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7973566 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7973595 NNNNNNNNNN
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 69 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7976321 original size:144 final size:144
Alignment explanation
Indices: 7976058--7976895 Score: 768
Period size: 144 Copynumber: 5.8 Consensus size: 144
7976048 CATTCGATAG
* * * * * * * * ** *
7976058 GAAATTTGATAAATTTATCTGTTCTTTACCTTTACAACAATAAATTCTTTGGTTCCATTTTTCGA
1 GAAATTTGACAAACTTATCCGTTCTTTACCTTCACAACAACAAACTCTCTAGTTCCATTCCTCAA
* * * * *** * * * * *
7976123 GAAATTAGATTGTTAAGATCTCTTGT-TGACCTTTTTTTGTCTCAGAATAGTTTCACAGGTCCAA
66 GAAATTGGGTTATTAAGATCTCTT-TCTAACCTTGAATTATCTAACAACAATTTCACAGGTCCAA
*
7976187 TCCCAACTTCAATAA
130 TCCCAGCTTCAATAA
* * * *
7976202 GAAATTTGATAAGCTTATCCGTTCTTTACCTTCATAATAACAAACTCTCTAGTTCCATTCCTCAA
1 GAAATTTGACAAACTTATCCGTTCTTTACCTTCACAACAACAAACTCTCTAGTTCCATTCCTCAA
* * ** * *
7976267 GAAATCGGGTTATTAAGATCTTTTTCCGACCTTGAATTATCTCACAACAATTTCACAAGTCCAAT
66 GAAATTGGGTTATTAAGATCTCTTTCTAACCTTGAATTATCTAACAACAATTTCACAGGTCCAAT
*
7976332 CCCAGCTTCAATAG
131 CCCAGCTTCAATAA
* * * * *
7976346 GAAATTTGACAAACTTATCCATTCTTGACCTTCACAACAACAAACTCTCTGGTTCTATTCCTTAA
1 GAAATTTGACAAACTTATCCGTTCTTTACCTTCACAACAACAAACTCTCTAGTTCCATTCCTCAA
* * * * * * * *
7976411 GAAATCGGGTTATTAAAATCTCTTTTTGACCTCGAAGTATCTCACAACAATTTCACAGGTCTAAT
66 GAAATTGGGTTATTAAGATCTCTTTCTAACCTTGAATTATCTAACAACAATTTCACAGGTCCAAT
*
7976476 CCCAGCTTCAATAG
131 CCCAGCTTCAATAA
* *
7976490 GAAATTTGACAAACTTATCCGTTCTTTACCTTCACAACAACAAACTCTCT-GGTCTTATTCC-CT
1 GAAATTTGACAAACTTATCCGTTCTTTACCTTCACAACAACAAACTCTCTAGTTC-CATTCCTC-
* * * * * * *
7976553 AAAAAATTAGGTTCTTAATATCTCTTTCTAAGCTTGTACTATCTAACAACAATTTCACAGGTCCA
64 AAGAAATTGGGTTATTAAGATCTCTTTCTAACCTTGAATTATCTAACAACAATTTCACAGGTCCA
*
7976618 ATCCCAGCTTCAGTAA
129 ATCCCAGCTTCAATAA
* * * * * * *
7976634 GAAATTTGACAAACTTATCTGTTTTTTACCTTTACAGCAACAAACTCTCTGGTTCCATTCCCCCA
1 GAAATTTGACAAACTTATCCGTTCTTTACCTTCACAACAACAAACTCTCTAGTTCCATTCCTCAA
* ** * * * *
7976699 GAAATTGGATTGCTAAGATCTCTTTCTTACCTTGATTTGTCTAAAAACAAATTT-ACAGGTCCAA
66 GAAATTGGGTTATTAAGATCTCTTTCTAACCTTGAATTATCTAACAAC-AATTTCACAGGTCCAA
7976763 TCCCAGCTTCAAT-A
130 TCCCAGCTTCAATAA
** * * * * * ** ** * * *
7976777 GAAAATTTGGTAAACTTAACCCTTATTCACTTTCACATTAACGTACTTTCCAGATCCATTCCTCA
1 G-AAATTTGACAAACTTATCCGTTCTTTACCTTCACAACAACAAACTCTCTAGTTCCATTCCTCA
** * * *
7976842 AGAAATTGGCATGTTAAGATCTCTTTCTAACCTTAAATTATCTTACAACAATTT
65 AGAAATTGGGTTATTAAGATCTCTTTCTAACCTTGAATTATCTAACAACAATTT
7976896 NCAAACTTAT
Statistics
Matches: 573, Mismatches: 114, Indels: 15
0.82 0.16 0.02
Matches are distributed among these distances:
143 11 0.02
144 553 0.97
145 9 0.02
ACGTcount: A:0.31, C:0.23, G:0.10, T:0.36
Consensus pattern (144 bp):
GAAATTTGACAAACTTATCCGTTCTTTACCTTCACAACAACAAACTCTCTAGTTCCATTCCTCAA
GAAATTGGGTTATTAAGATCTCTTTCTAACCTTGAATTATCTAACAACAATTTCACAGGTCCAAT
CCCAGCTTCAATAA
Found at i:7977157 original size:144 final size:144
Alignment explanation
Indices: 7976897--7977913 Score: 911
Period size: 144 Copynumber: 7.1 Consensus size: 144
7976887 CAACAATTTN
* * * *
7976897 CAAACTTATCCGTTCTTTACCTTCACAACAACAAACTCTCTGG-TCTTATTCCCTAAAAAATTAG
1 CAAACTTATCCGTTCTTTACCTTTACAACAACAAACTCTCTGGTTC-CATTCCCCAAGAAATT-G
* * * * * * *
7976961 G-TT-CTTAATATCTCTTTCTAAGCTTGTACTATCTAACAACAATTTCACAGGTCCAATCCCAGC
64 GATTGC-TAAGATCTCTTTCTTACCTTGAATTGTCTAAAAACAATTTCACAGGTCCAATCCCAGC
* *
7977024 TTCAGTAAGAAATTTGA
128 TTCAATAGGAAATTTGA
* * * *
7977041 CAAACTTATCTGTTTTTTACCTTTACAGCAACAAACTCTCTGGTTCCATTCCCCCAGAAATTGGA
1 CAAACTTATCCGTTCTTTACCTTTACAACAACAAACTCTCTGGTTCCATTCCCCAAGAAATTGGA
*
7977106 TTGCTAAGATCTCTTTCTTACCTTGATTTGTCTAAAAACAAATTT-ACAGGTCCAATCCCAGCTT
66 TTGCTAAGATCTCTTTCTTACCTTGAATTGTCTAAAAAC-AATTTCACAGGTCCAATCCCAGCTT
* *
7977170 CAATAGAAAATTTGG
130 CAATAGGAAATTTGA
* * * * * ** ** * ** * *
7977185 TAAACTTAACCCTTATTCA-CTTTCACATTAACGTACTTTCCAGATCCATTCCTCAAGAAATTGG
1 CAAACTTATCCGTTCTTTACCTTT-ACAACAACAAACTCTCTGGTTCCATTCCCCAAGAAATTGG
* * * * * * * * *
7977249 CA-TGTTAAGATCTCTTTCTAACCTTAAATTATCTTACAACAATTTCATAGGTCCAATCCCAACA
65 -ATTGCTAAGATCTCTTTCTTACCTTGAATTGTCTAAAAACAATTTCACAGGTCCAATCCCAGCT
7977313 TCAATAGGAAATTTGA
129 TCAATAGGAAATTTGA
* * * * * * * *
7977329 TAAACTTATCCATTCTTTACCTTAACAACAACAAACTCTCAGGTTCCATTTCCAAAGAAACTGGG
1 CAAACTTATCCGTTCTTTACCTTTACAACAACAAACTCTCTGGTTCCATTCCCCAAGAAATTGGA
* * * *
7977394 TTGCTAAGATCTCTTT-TTGACCTCGAATTGTCTGAAAACAATTTTATAGGTCCAATCCCAGCTT
66 TTGCTAAGATCTCTTTCTT-ACCTTGAATTGTCTAAAAACAATTTCACAGGTCCAATCCCAGCTT
*
7977458 CAATAGGAAATTT-T
130 CAATAGGAAATTTGA
* * *
7977472 CTAAACTTATCCTTTCTTTACCTTTACAACAACAAACTCTCTGATTCCATTCCCAAAGAAATT-G
1 C-AAACTTATCCGTTCTTTACCTTTACAACAACAAACTCTCTGGTTCCATTCCCCAAGAAATTGG
* * * * * *
7977536 AGTTGTTAAGATCTCTTTCTGACCTTGAATTGTCCAACAACAATTTCACAAGTCTAATCCCAGCT
65 A-TTGCTAAGATCTCTTTCTTACCTTGAATTGTCTAAAAACAATTTCACAGGTCCAATCCCAGCT
*
7977601 TCAATGGGAAATTTGA
129 TCAATAGGAAATTTGA
* * * **
7977617 CAAACTTATCTGTTTTTTACCTTTACAATAACAAACTCTCTATTTCCATTCCCCAAGAAATTGGA
1 CAAACTTATCCGTTCTTTACCTTTACAACAACAAACTCTCTGGTTCCATTCCCCAAGAAATTGGA
* * * * *
7977682 TTGCTGAGATCTCTTTCTTACCTTGATTTGTCTGAAAACAAATTT-ACTGGTCCAATCCCAACTT
66 TTGCTAAGATCTCTTTCTTACCTTGAATTGTCTAAAAAC-AATTTCACAGGTCCAATCCCAGCTT
* *
7977746 CAATAGGAAATTCGG
130 CAATAGGAAATTTGA
* * * * * ** * * * * ***
7977761 TAAACTTAACCCTTCTTCACCTTCACATTAACATACTTTCTGGATCAATTCTTGAAGAAATTGGA
1 CAAACTTATCCGTTCTTTACCTTTACAACAACAAACTCTCTGGTTCCATTCCCCAAGAAATTGGA
* * * * * * * * * * * * *
7977826 ATGTTAAGATTTCTTTCTAATCTTAAATTGTCTTATAATAATCTCACAAGTCCAATCCCAACATC
66 TTGCTAAGATCTCTTTCTTACCTTGAATTGTCTAAAAACAATTTCACAGGTCCAATCCCAGCTTC
*
7977891 AATAGAAAATTTGA
131 AATAGGAAATTTGA
*
7977905 TAAACTTAT
1 CAAACTTAT
7977914 TATCGTAACG
Statistics
Matches: 702, Mismatches: 154, Indels: 34
0.79 0.17 0.04
Matches are distributed among these distances:
143 17 0.02
144 664 0.95
145 21 0.03
ACGTcount: A:0.32, C:0.23, G:0.10, T:0.35
Consensus pattern (144 bp):
CAAACTTATCCGTTCTTTACCTTTACAACAACAAACTCTCTGGTTCCATTCCCCAAGAAATTGGA
TTGCTAAGATCTCTTTCTTACCTTGAATTGTCTAAAAACAATTTCACAGGTCCAATCCCAGCTTC
AATAGGAAATTTGA
Found at i:7977235 original size:398 final size:397
Alignment explanation
Indices: 7976499--7977295 Score: 1585
Period size: 398 Copynumber: 2.0 Consensus size: 397
7976489 GGAAATTTGA
7976499 CAAACTTATCCGTTCTTTACCTTCACAACAACAAACTCTCTGGTCTTATTCCCTAAAAAATTAGG
1 CAAACTTATCCGTTCTTTACCTTCACAACAACAAACTCTCTGGTCTTATTCCCTAAAAAATTAGG
7976564 TTCTTAATATCTCTTTCTAAGCTTGTACTATCTAACAACAATTTCACAGGTCCAATCCCAGCTTC
66 TTCTTAATATCTCTTTCTAAGCTTGTACTATCTAACAACAATTTCACAGGTCCAATCCCAGCTTC
7976629 AGTAAGAAATTTGACAAACTTATCTGTTTTTTACCTTTACAGCAACAAACTCTCTGGTTCCATTC
131 AGTAAGAAATTTGACAAACTTATCTGTTTTTTACCTTTACAGCAACAAACTCTCTGGTTCCATTC
7976694 CCCCAGAAATTGGATTGCTAAGATCTCTTTCTTACCTTGATTTGTCTAAAAACAAATTTACAGGT
196 CCCCAGAAATTGGATTGCTAAGATCTCTTTCTTACCTTGATTTGTCTAAAAACAAATTTACAGGT
7976759 CCAATCCCAGCTTCAATAGAAAATTTGGTAAACTTAACCCTTATTCACTTTCACATTAACGTACT
261 CCAATCCCAGCTTCAATAGAAAATTTGGTAAACTTAACCCTTATTCACTTTCACATTAACGTACT
7976824 TTCCAGATCCATTCCTCAAGAAATTGGCATGTTAAGATCTCTTTCTAACCTTAAATTATCTTACA
326 TTCCAGATCCATTCCTCAAGAAATTGGCATGTTAAGATCTCTTTCTAACCTTAAATTATCTTACA
7976889 ACAATTT
391 ACAATTT
7976896 NCAAACTTATCCGTTCTTTACCTTCACAACAACAAACTCTCTGGTCTTATTCCCTAAAAAATTAG
1 -CAAACTTATCCGTTCTTTACCTTCACAACAACAAACTCTCTGGTCTTATTCCCTAAAAAATTAG
7976961 GTTCTTAATATCTCTTTCTAAGCTTGTACTATCTAACAACAATTTCACAGGTCCAATCCCAGCTT
65 GTTCTTAATATCTCTTTCTAAGCTTGTACTATCTAACAACAATTTCACAGGTCCAATCCCAGCTT
7977026 CAGTAAGAAATTTGACAAACTTATCTGTTTTTTACCTTTACAGCAACAAACTCTCTGGTTCCATT
130 CAGTAAGAAATTTGACAAACTTATCTGTTTTTTACCTTTACAGCAACAAACTCTCTGGTTCCATT
7977091 CCCCCAGAAATTGGATTGCTAAGATCTCTTTCTTACCTTGATTTGTCTAAAAACAAATTTACAGG
195 CCCCCAGAAATTGGATTGCTAAGATCTCTTTCTTACCTTGATTTGTCTAAAAACAAATTTACAGG
7977156 TCCAATCCCAGCTTCAATAGAAAATTTGGTAAACTTAACCCTTATTCACTTTCACATTAACGTAC
260 TCCAATCCCAGCTTCAATAGAAAATTTGGTAAACTTAACCCTTATTCACTTTCACATTAACGTAC
7977221 TTTCCAGATCCATTCCTCAAGAAATTGGCATGTTAAGATCTCTTTCTAACCTTAAATTATCTTAC
325 TTTCCAGATCCATTCCTCAAGAAATTGGCATGTTAAGATCTCTTTCTAACCTTAAATTATCTTAC
7977286 AACAATTT
390 AACAATTT
7977294 CA
1 CA
7977296 TAGGTCCAAT
Statistics
Matches: 399, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
397 2 0.01
398 397 0.99
ACGTcount: A:0.31, C:0.24, G:0.09, T:0.35
Consensus pattern (397 bp):
CAAACTTATCCGTTCTTTACCTTCACAACAACAAACTCTCTGGTCTTATTCCCTAAAAAATTAGG
TTCTTAATATCTCTTTCTAAGCTTGTACTATCTAACAACAATTTCACAGGTCCAATCCCAGCTTC
AGTAAGAAATTTGACAAACTTATCTGTTTTTTACCTTTACAGCAACAAACTCTCTGGTTCCATTC
CCCCAGAAATTGGATTGCTAAGATCTCTTTCTTACCTTGATTTGTCTAAAAACAAATTTACAGGT
CCAATCCCAGCTTCAATAGAAAATTTGGTAAACTTAACCCTTATTCACTTTCACATTAACGTACT
TTCCAGATCCATTCCTCAAGAAATTGGCATGTTAAGATCTCTTTCTAACCTTAAATTATCTTACA
ACAATTT
Found at i:7977434 original size:288 final size:287
Alignment explanation
Indices: 7976965--7977913 Score: 1134
Period size: 288 Copynumber: 3.3 Consensus size: 287
7976955 AATTAGGTTC
* * ** * * * * *
7976965 TTAATATCTCTTTCTAAGCTTGTACTATCTAACAACAATTTCACAGGTCCAATCCCAGCTTCAGT
1 TTAAGATCTCTTTCTAACCTTAAATTATCTAACAACAATTTCACAAGTCCAATCCCAACATCAAT
* * *
7977030 AAGAAATTTGACAAACTTATCTGTTTTTTACCTTTACAGCAACAAACTCTCTGGTTCCATTCCCC
66 AGGAAATTTGACAAACTTATCTGTTTTTTACCTTTACAACAACAAACTCTCAGGTTCCATTCCCC
* *
7977095 CAGAAATTGGATTGCTAAGATCTCTTTCTTACCTTGATTTGTCTAAAAACAAATTTACAGGTCCA
131 AAGAAATTGGATTGCTAAGATCTCTTTCTTACCTTGATTTGTCTGAAAACAAATTTACAGGTCCA
* * *
7977160 ATCCCAGCTTCAATAGAAAATTTGGTAAACTTAACCCTTATTCACTTTCACATTAACGTACTTTC
196 ATCCCAGCTTCAATAGGAAATTTGGTAAACTTAACCCTTCTTCACTTTCACATTAACATACTTTC
7977225 CAGATCCATTCCTCAAGAAATTGGCATG
261 CAGATCCATTCCTCAAGAAATTGG-ATG
* * *
7977253 TTAAGATCTCTTTCTAACCTTAAATTATCTTACAACAATTTCATAGGTCCAATCCCAACATCAAT
1 TTAAGATCTCTTTCTAACCTTAAATTATCTAACAACAATTTCACAAGTCCAATCCCAACATCAAT
* ** * * * *
7977318 AGGAAATTTGATAAACTTATCCATTCTTTACCTTAACAACAACAAACTCTCAGGTTCCATTTCCA
66 AGGAAATTTGACAAACTTATCTGTTTTTTACCTTTACAACAACAAACTCTCAGGTTCCATTCCCC
* * * * * *
7977383 AAGAAACTGGGTTGCTAAGATCTCTTT-TTGACCTCGAATTGTCTGAAAACAATTTTATAGGTCC
131 AAGAAATTGGATTGCTAAGATCTCTTTCTT-ACCTTGATTTGTCTGAAAACAAATTTACAGGTCC
** * * * ** * *
7977447 AATCCCAGCTTCAATAGGAAATTTTCTAAACTTATCCTTTCTTTACCTTT-ACAACAACAAACTC
195 AATCCCAGCTTCAATAGGAAATTTGGTAAACTTAACCCTTCTTCA-CTTTCACATTAACATACTT
* *
7977511 T-CTGATTCCATTCC-CAAAGAAATTGAGTTG
259 TCCAGA-TCCATTCCTC-AAGAAATTG-GATG
* * * * * * *
7977541 TTAAGATCTCTTTCTGACCTTGAATTGTCCAACAACAATTTCACAAGTCTAATCCCAGCTTCAAT
1 TTAAGATCTCTTTCTAACCTTAAATTATCTAACAACAATTTCACAAGTCCAATCCCAACATCAAT
* * *
7977606 GGGAAATTTGACAAACTTATCTGTTTTTTACCTTTACAATAACAAACTCTCTA-TTTCCATTCCC
66 AGGAAATTTGACAAACTTATCTGTTTTTTACCTTTACAACAACAAACTCTC-AGGTTCCATTCCC
* *
7977670 CAAGAAATTGGATTGCTGAGATCTCTTTCTTACCTTGATTTGTCTGAAAACAAATTTACTGGTCC
130 CAAGAAATTGGATTGCTAAGATCTCTTTCTTACCTTGATTTGTCTGAAAACAAATTTACAGGTCC
* * *
7977735 AATCCCAACTTCAATAGGAAATTCGGTAAACTTAACCCTTCTTCACCTTCACATTAACATACTTT
195 AATCCCAGCTTCAATAGGAAATTTGGTAAACTTAACCCTTCTTCACTTTCACATTAACATACTTT
** * * *
7977800 CTGGATCAATTCTTGAAGAAATTGGAATG
260 CCAGATCCATTCCTCAAGAAATTGG-ATG
* * * * * * *
7977829 TTAAGATTTCTTTCTAATCTTAAATTGTCTTATAATAATCTCACAAGTCCAATCCCAACATCAAT
1 TTAAGATCTCTTTCTAACCTTAAATTATCTAACAACAATTTCACAAGTCCAATCCCAACATCAAT
* *
7977894 AGAAAATTTGATAAACTTAT
66 AGGAAATTTGACAAACTTAT
7977914 TATCGTAACG
Statistics
Matches: 547, Mismatches: 103, Indels: 22
0.81 0.15 0.03
Matches are distributed among these distances:
287 10 0.02
288 527 0.96
289 10 0.02
ACGTcount: A:0.32, C:0.23, G:0.10, T:0.35
Consensus pattern (287 bp):
TTAAGATCTCTTTCTAACCTTAAATTATCTAACAACAATTTCACAAGTCCAATCCCAACATCAAT
AGGAAATTTGACAAACTTATCTGTTTTTTACCTTTACAACAACAAACTCTCAGGTTCCATTCCCC
AAGAAATTGGATTGCTAAGATCTCTTTCTTACCTTGATTTGTCTGAAAACAAATTTACAGGTCCA
ATCCCAGCTTCAATAGGAAATTTGGTAAACTTAACCCTTCTTCACTTTCACATTAACATACTTTC
CAGATCCATTCCTCAAGAAATTGGATG
Found at i:7977533 original size:686 final size:685
Alignment explanation
Indices: 7976215--7977583 Score: 1574
Period size: 686 Copynumber: 2.0 Consensus size: 685
7976205 ATTTGATAAG
* * * *
7976215 CTTATCCGTTCTTTACCTTCATAATAACAAACTCTCTAGTTCCATTCCTCAAGAAATCGGGTTAT
1 CTTATCCGTTCTTTACCTTCACAACAACAAACTCTCTAGTTCCATTCCTCAAAAAATCAGGTTAT
* * * *
7976280 TAAGATCTTTTTCCGACCTTGAATTATCTCACAACAATTTCACAAGTCCAATCCCAGCTTCAATA
66 TAAGATCTCTTTCCAACCTTGAACTATCTAACAACAATTTCACAAGTCCAATCCCAGCTTCAATA
* * **
7976345 GGAAATTTGACAAACTTATCCATTCTTGACCTTCACAACAACAAACTCTCTGGTTCTATTCCTTA
131 AGAAATTTGACAAACTTATCCATTCTTGACCTTCACAACAACAAACTCTCTGGTTCCATTCCCCA
* * * * *
7976410 AGAAATCGGGTTATTAAAATCTCTTTTTGACCTCGAAGTATCTCACAACAATTTCACAGGTCTAA
196 AGAAATCGGATTACTAAAATCTCTTTTTGACCTCGAAGTATCTAAAAACAATTTCACAGGTCCAA
* * * * * *
7976475 TCCCAGCTTCAATAGGAAATTTGACAAACTTATCCGTTCTTTACCTTCACAACAACAAACTCTCT
261 TCCCAGCTTCAATAGAAAATTTGACAAACTTAACCCTTATTCACCTTCACAACAACAAACTCTCA
* * * * * **
7976540 GGTCTTATTCCCTAAAAAATTAGGTTCTTAATATCTCTTTCTAAGCTTGTACTATCTAACAACAA
326 GATCTCATTCCCTAAAAAATTAGGATCTTAAGATCTCTTTCTAACCTTAAACTATCTAACAACAA
* * * ** * *
7976605 TTTCACAGGTCCAATCCCAGCTTCAGTAAGAAATTTGACAAACTTATCTGTTTTTTACCTTTACA
391 TTTCACAGGTCCAATCCCAACATCAATAAGAAATTTGACAAACTTATCCATTCTTTACCTTAACA
* * ** * * *
7976670 GCAACAAACTCTCTGGTTCCATTCCCCCAGAAATTGGATTGCTAAGATCTCTTTCTTACCTTGAT
456 ACAACAAACTCTCAGGTTCCATTCCCAAAGAAACTGGATTGCTAAGATCTCTTTCTTACCTCGAA
*
7976735 TTGTCTAAAAACAAATTTACAGGTCCAATCCCAGCTTCAATAGAAAATTTGGTAAACTTAACCCT
521 TTGTCTAAAAACAAATTTACAGGTCCAATCCCAGCTTCAATAGAAAATTTGCTAAACTTAACCCT
** ** *
7976800 TATTCACTTTCACATTAACGTACTTTCCAGATCCATTCCTCAAGAAATTG-GCATGTTAAGATCT
586 TATTCACTTTCACAACAACAAACTCTCCAGATCCATTCCTCAAGAAATTGAG-ATGTTAAGATCT
**
7976864 CTTTCTAACCTTAAATTATCTTACAACAATTTNCAAA
650 CTTTCTAACCTTAAATTATCCAACAACAATTT-CAAA
* * *
7976901 CTTATCCGTTCTTTACCTTCACAACAACAAACTCTCT-GGTCTTATTCC-CTAAAAAATTAGGTT
1 CTTATCCGTTCTTTACCTTCACAACAACAAACTCTCTAGTTC-CATTCCTC-AAAAAATCAGGTT
* * * * * * *
7976964 CTTAATATCTCTTTCTAAGCTTGTACTATCTAACAACAATTTCACAGGTCCAATCCCAGCTTCAG
64 ATTAAGATCTCTTTCCAACCTTGAACTATCTAACAACAATTTCACAAGTCCAATCCCAGCTTCAA
** * * * *
7977029 TAAGAAATTTGACAAACTTATCTGTTTTTTACCTTTACAGCAACAAACTCTCTGGTTCCATTCCC
129 TAAGAAATTTGACAAACTTATCCATTCTTGACCTTCACAACAACAAACTCTCTGGTTCCATTCCC
* * * * * ** *
7977094 CCAGAAATTGGATTGCTAAGATCTCTTTCTT-ACCTTGATTTGTCTAAAAACAAATTT-ACAGGT
194 CAAGAAATCGGATTACTAAAATCTCTTT-TTGACCTCGAAGTATCTAAAAAC-AATTTCACAGGT
** * ** **
7977157 CCAATCCCAGCTTCAATAGAAAATTTGGTAAACTTAACCCTTATTCACTTTCACATTAACGTACT
257 CCAATCCCAGCTTCAATAGAAAATTTGACAAACTTAACCCTTATTCACCTTCACAACAACAAACT
* * * * *
7977222 TTCCAGATC-CATT-CCTCAAGAAATT-GGCATGTTAAGATCTCTTTCTAACCTTAAATTATCTT
322 CT-CAGATCTCATTCCCT-AAAAAATTAGG-ATCTTAAGATCTCTTTCTAACCTTAAACTATCTA
* * *
7977284 ACAACAATTTCATAGGTCCAATCCCAACATCAATAGGAAATTTGATAAACTTATCCATTCTTTAC
384 ACAACAATTTCACAGGTCCAATCCCAACATCAATAAGAAATTTGACAAACTTATCCATTCTTTAC
* *
7977349 CTTAACAACAACAAACTCTCAGGTTCCATTTCCAAAGAAACTGGGTTGCTAAGATCTCTTT-TTG
449 CTTAACAACAACAAACTCTCAGGTTCCATTCCCAAAGAAACTGGATTGCTAAGATCTCTTTCTT-
* * * * *
7977413 ACCTCGAATTGTCTGAAAACAATTTTATAGGTCCAATCCCAGCTTCAATAGGAAATTTTCTAAAC
513 ACCTCGAATTGTCTAAAAACAAATTTACAGGTCCAATCCCAGCTTCAATAGAAAATTTGCTAAAC
* * * * * *
7977478 TTATCCTTTCTTTACCTTT-ACAACAACAAACTCT-CTGATTCCATTCC-CAAAGAAATTGAGTT
578 TTAACCCTTATTCA-CTTTCACAACAACAAACTCTCCAGA-TCCATTCCTC-AAGAAATTGAGAT
* * *
7977540 GTTAAGATCTCTTTCTGACCTTGAATTGTCCAACAACAATTTCA
640 GTTAAGATCTCTTTCTAACCTTAAATTATCCAACAACAATTTCA
7977584 CAAGTCTAAT
Statistics
Matches: 564, Mismatches: 107, Indels: 25
0.81 0.15 0.04
Matches are distributed among these distances:
685 17 0.03
686 531 0.94
687 16 0.03
ACGTcount: A:0.32, C:0.24, G:0.10, T:0.34
Consensus pattern (685 bp):
CTTATCCGTTCTTTACCTTCACAACAACAAACTCTCTAGTTCCATTCCTCAAAAAATCAGGTTAT
TAAGATCTCTTTCCAACCTTGAACTATCTAACAACAATTTCACAAGTCCAATCCCAGCTTCAATA
AGAAATTTGACAAACTTATCCATTCTTGACCTTCACAACAACAAACTCTCTGGTTCCATTCCCCA
AGAAATCGGATTACTAAAATCTCTTTTTGACCTCGAAGTATCTAAAAACAATTTCACAGGTCCAA
TCCCAGCTTCAATAGAAAATTTGACAAACTTAACCCTTATTCACCTTCACAACAACAAACTCTCA
GATCTCATTCCCTAAAAAATTAGGATCTTAAGATCTCTTTCTAACCTTAAACTATCTAACAACAA
TTTCACAGGTCCAATCCCAACATCAATAAGAAATTTGACAAACTTATCCATTCTTTACCTTAACA
ACAACAAACTCTCAGGTTCCATTCCCAAAGAAACTGGATTGCTAAGATCTCTTTCTTACCTCGAA
TTGTCTAAAAACAAATTTACAGGTCCAATCCCAGCTTCAATAGAAAATTTGCTAAACTTAACCCT
TATTCACTTTCACAACAACAAACTCTCCAGATCCATTCCTCAAGAAATTGAGATGTTAAGATCTC
TTTCTAACCTTAAATTATCCAACAACAATTTCAAA
Found at i:7977676 original size:830 final size:829
Alignment explanation
Indices: 7976173--7977705 Score: 1882
Period size: 830 Copynumber: 1.8 Consensus size: 829
7976163 CTCAGAATAG
* * *
7976173 TTTCACAGGTCCAATCCCAACTTCAATAAGAAATTTGATAAGCTTATCCGTTCTTTACCTTCATA
1 TTTCACAGGTCCAATCCCAACTTCAATAAGAAATTTGACAAACTTATCCGTTCTTTACCTTCACA
* * * * *
7976238 ATAACAAACTCTCTAGTTCCATTCCTCAAGAAATCGGGTTATTAAGATCTTTTTCCGACCTTGAA
66 ACAACAAACTCTCTAGTTCCATTCCCCAAGAAATCGGATTACTAAGATCTCTTTCCGACCTTGAA
* * * *
7976303 TTATCTCACAACAATTTCACAAGTCCAATCCCAGCTTCAATAGGAAATTTGACAAACTTATCCAT
131 TTATCTAAAAACAATTTCACAAGTCCAATCCCAGCTTCAATAGAAAATTTGACAAACTTAACCAT
* * ** * * * **
7976368 TCTTGACCTTCACAACAACAAACTCTCTGGTTCTATTCCTTAAGAAATCGGGTTATTAAAATCTC
196 TATTCACCTTCACAACAACAAACTCTCCAGATCCATTCCTCAAGAAATCGGCATATTAAAATCTC
* * * * * *
7976433 TTTTTGACCTCGAAGTATCTCACAACAATTTCACAGGTCTAATCCCAGCTTCAATAGGAAATTTG
261 TTTCTAACCTCAAAGTATCTCACAACAATTTCACAGGTCCAATCCCAACATCAATAGGAAATTTG
* * * * *
7976498 ACAAACTTATCCGTTCTTTACCTTCACAACAACAAACTCTCTGGTCTTATTCCCTAAAAAATTAG
326 ACAAACTTATCCATTCTTTACCTTAACAACAACAAACTCTCAGGTCTCATTCCCTAAAAAACTAG
* * * *
7976563 GTTCTTAATATCTCTTTCTAAGCTTGTACTATCTAACAACAATTTCACAGGTCCAATCCCAGCTT
391 GTTCTTAAGATCTCTTTCTAACCTCGAACTATCTAACAACAATTTCACAGGTCCAATCCCAGCTT
* * * *
7976628 CAGTAAGAAATTTGACAAACTTATCTGTTTTTTACCTTTACAGCAACAAACTCTCTGGTTCCATT
456 CAATAAGAAATTTGACAAACTTATCTGTTCTTTACCTTTACAACAACAAACTCTCTGATTCCATT
** * * * *
7976693 CCCCCAGAAATTGGATTGCTAAGATCTCTTTCTTACCTTGATTTGTCTAAAAACAAATTTACAGG
521 CCCAAAGAAATTGGATTGCTAAGATCTCTTTCTGACCTTGAATTGTCCAAAAACAAATTTACAAG
** * **
7976758 TCCAATCCCAGCTTCAATAGAAAATTTGGTAAACTTAACCCTTATTCACTTTCACATTAACGTAC
586 TCCAATCCCAGCTTCAATAGAAAATTTGACAAACTTAACCCTTATTCACTTTCACAATAACAAAC
* * *
7976823 TTTCCAGATCCATTCCTCAAGAAATTGGCA-TGTTAAGATCTCTTTCTAACCTTAAATTATCTTA
651 TCTCCAGATCCATTCCCCAAGAAATTGG-ATTGCTAAGATCTCTTTCTAACCTTAAATTATCTTA
7976887 CAACAATTTNCAAACTTATCCGTTCTTTACCTTCACAACAACAAACTCTCTGGTCTTATTCCCTA
715 CAACAATTT-CAAACTTATCCGTTCTTTACCTTCACAACAACAAACTCTCTGGTCTTATTCCCTA
7976952 AAAAATTAGGTTCTTAATATCTCTTTCTAAGCTTGTACTATCTAACAACAA
779 AAAAATTAGGTTCTTAATATCTCTTTCTAAGCTTGTACTATCTAACAACAA
* * * * *
7977003 TTTCACAGGTCCAATCCCAGCTTCAGTAAGAAATTTGACAAACTTATCTGTTTTTTACCTTTACA
1 TTTCACAGGTCCAATCCCAACTTCAATAAGAAATTTGACAAACTTATCCGTTCTTTACCTTCACA
* * * * * ** *
7977068 GCAACAAACTCTCTGGTTCCATTCCCCCAGAAATTGGATTGCTAAGATCTCTTTCTTACCTTGAT
66 ACAACAAACTCTCTAGTTCCATTCCCCAAGAAATCGGATTACTAAGATCTCTTTCCGACCTTGAA
* * ** *
7977133 TTGTCTAAAAACAAATTT-ACAGGTCCAATCCCAGCTTCAATAGAAAATTTGGTAAACTTAACCC
131 TTATCTAAAAAC-AATTTCACAAGTCCAATCCCAGCTTCAATAGAAAATTTGACAAACTTAACCA
* ** ** * * * *
7977197 TTATTCACTTTCACATTAACGTACTTTCCAGATCCATTCCTCAAGAAATTGGCATGTTAAGATCT
195 TTATTCACCTTCACAACAACAAACTCTCCAGATCCATTCCTCAAGAAATCGGCATATTAAAATCT
* * * *
7977262 CTTTCTAACCTTAAATTATCTTACAACAATTTCATAGGTCCAATCCCAACATCAATAGGAAATTT
260 CTTTCTAACCTCAAAGTATCTCACAACAATTTCACAGGTCCAATCCCAACATCAATAGGAAATTT
* *
7977327 GATAAACTTATCCATTCTTTACCTTAACAACAACAAACTCTCAGGT-TCCATTTCC-AAAGAAAC
325 GACAAACTTATCCATTCTTTACCTTAACAACAACAAACTCTCAGGTCT-CATTCCCTAAA-AAAC
* * * * * * *
7977390 TGGGTTGC-TAAGATCTCTTTTTGACCTCGAATTGTCTGAA-AACAATTTTATAGGTCCAATCCC
388 TAGGTT-CTTAAGATCTCTTTCTAACCTCGAACTATCT-AACAACAATTTCACAGGTCCAATCCC
* *
7977453 AGCTTCAATAGGAAATTT-TCTAAACTTATCCT-TTCTTTACCTTTACAACAACAAACTCTCTGA
451 AGCTTCAATAAGAAATTTGAC-AAACTTAT-CTGTTCTTTACCTTTACAACAACAAACTCTCTGA
* *
7977516 TTCCATTCCCAAAGAAATT-GAGTTGTTAAGATCTCTTTCTGACCTTGAATTGTCCAACAAC-AA
514 TTCCATTCCCAAAGAAATTGGA-TTGCTAAGATCTCTTTCTGACCTTGAATTGTCCAAAAACAAA
* * * * ** * *
7977579 TTTCACAAGTCTAATCCCAGCTTCAATGGGAAATTTGACAAACTTATCTGTTTTTTACCTTT-AC
578 TTT-ACAAGTCCAATCCCAGCTTCAATAGAAAATTTGACAAACTTAACCCTTATTCA-CTTTCAC
* ** * *
7977643 AATAACAAACTCTCTATTTCCATTCCCCAAGAAATTGGATTGCTGAGATCTCTTTCTTACCTT
641 AATAACAAACTCTCCAGATCCATTCCCCAAGAAATTGGATTGCTAAGATCTCTTTCTAACCTT
7977706 GATTTGTCTG
Statistics
Matches: 581, Mismatches: 111, Indels: 22
0.81 0.16 0.03
Matches are distributed among these distances:
829 13 0.02
830 554 0.95
831 14 0.02
ACGTcount: A:0.32, C:0.24, G:0.10, T:0.34
Consensus pattern (829 bp):
TTTCACAGGTCCAATCCCAACTTCAATAAGAAATTTGACAAACTTATCCGTTCTTTACCTTCACA
ACAACAAACTCTCTAGTTCCATTCCCCAAGAAATCGGATTACTAAGATCTCTTTCCGACCTTGAA
TTATCTAAAAACAATTTCACAAGTCCAATCCCAGCTTCAATAGAAAATTTGACAAACTTAACCAT
TATTCACCTTCACAACAACAAACTCTCCAGATCCATTCCTCAAGAAATCGGCATATTAAAATCTC
TTTCTAACCTCAAAGTATCTCACAACAATTTCACAGGTCCAATCCCAACATCAATAGGAAATTTG
ACAAACTTATCCATTCTTTACCTTAACAACAACAAACTCTCAGGTCTCATTCCCTAAAAAACTAG
GTTCTTAAGATCTCTTTCTAACCTCGAACTATCTAACAACAATTTCACAGGTCCAATCCCAGCTT
CAATAAGAAATTTGACAAACTTATCTGTTCTTTACCTTTACAACAACAAACTCTCTGATTCCATT
CCCAAAGAAATTGGATTGCTAAGATCTCTTTCTGACCTTGAATTGTCCAAAAACAAATTTACAAG
TCCAATCCCAGCTTCAATAGAAAATTTGACAAACTTAACCCTTATTCACTTTCACAATAACAAAC
TCTCCAGATCCATTCCCCAAGAAATTGGATTGCTAAGATCTCTTTCTAACCTTAAATTATCTTAC
AACAATTTCAAACTTATCCGTTCTTTACCTTCACAACAACAAACTCTCTGGTCTTATTCCCTAAA
AAATTAGGTTCTTAATATCTCTTTCTAAGCTTGTACTATCTAACAACAA
Found at i:7977736 original size:432 final size:432
Alignment explanation
Indices: 7976898--7977783 Score: 1013
Period size: 432 Copynumber: 2.1 Consensus size: 432
7976888 AACAATTTNC
* * * * *
7976898 AAACTTATCCGTTCTTTACCTTCACAACAACAAACTCTCTGGTCTTATTCCCTAAAAAATTAGGT
1 AAACTTATCCATTCTTTACCTTAACAACAACAAACTCTCAGGTCTCATTCCCTAAAAAACTAGGT
* * * *
7976963 TCTTAATATCTCTTTCTAAGCTTGTACTATCTAACAACAATTTCACAGGTCCAATCCCAGCTTCA
66 TCTTAAGATCTCTTTCTAACCTCGAACTATCTAACAACAATTTCACAGGTCCAATCCCAGCTTCA
* * * *
7977028 GTAAGAAATTTGACAAACTTATCTGTTTTTTACCTTTACAGCAACAAACTCTCTGGTTCCATTCC
131 ATAAGAAATTTGACAAACTTATCTGTTCTTTACCTTTACAACAACAAACTCTCTGATTCCATTCC
** * * * *
7977093 CCCAGAAATTGGATTGCTAAGATCTCTTTCTTACCTTGATTTGTCTAAAAACAAATTTACAGGTC
196 CAAAGAAATTGGATTGCTAAGATCTCTTTCTGACCTTGAATTGTCCAAAAACAAATTTACAAGTC
** * ** *
7977158 CAATCCCAGCTTCAATAGAAAATTTGGTAAACTTAACCCTTATTCACTTTCACATTAACGTACTT
261 CAATCCCAGCTTCAATAGAAAATTTGACAAACTTAACCCTTATTCACTTTCACAATAACAAACTC
* * * *
7977223 TCCAGATCCATTCCTCAAGAAATTGGCATGTTAAGATCTCTTTCTAACCTTAAATTATCTTACAA
326 TCCAGATCCATTCCCCAAGAAATTGGCATGCTAAGATCTCTTTCTAACCTTAAATTATCTGAAAA
*
7977288 CAATTTCATAGGTCCAATCCCAACATCAATAGGAAATTTGAT
391 CAATTTCATAGGTCCAATCCCAACATCAATAGGAAATTCGAT
* *
7977330 AAACTTATCCATTCTTTACCTTAACAACAACAAACTCTCAGGT-TCCATTTCC-AAAGAAACTGG
1 AAACTTATCCATTCTTTACCTTAACAACAACAAACTCTCAGGTCT-CATTCCCTAAA-AAACTAG
* * * * * *
7977393 GTTGC-TAAGATCTCTTTTTGACCTCGAATTGTCTGAA-AACAATTTTATAGGTCCAATCCCAGC
64 GTT-CTTAAGATCTCTTTCTAACCTCGAACTATCT-AACAACAATTTCACAGGTCCAATCCCAGC
* *
7977456 TTCAATAGGAAATTT-TCTAAACTTATCCT-TTCTTTACCTTTACAACAACAAACTCTCTGATTC
127 TTCAATAAGAAATTTGAC-AAACTTAT-CTGTTCTTTACCTTTACAACAACAAACTCTCTGATTC
* *
7977519 CATTCCCAAAGAAATT-GAGTTGTTAAGATCTCTTTCTGACCTTGAATTGTCCAACAAC-AATTT
190 CATTCCCAAAGAAATTGGA-TTGCTAAGATCTCTTTCTGACCTTGAATTGTCCAAAAACAAATTT
* * * * ** * *
7977582 CACAAGTCTAATCCCAGCTTCAATGGGAAATTTGACAAACTTATCTGTTTTTTACCTTT-ACAAT
254 -ACAAGTCCAATCCCAGCTTCAATAGAAAATTTGACAAACTTAACCCTTATTCA-CTTTCACAAT
* ** * * * *
7977646 AACAAACTCTCTATTTCCATTCCCCAAGAAATTGG-ATTGCTGAGATCTCTTTCTTACCTTGATT
317 AACAAACTCTCCAGATCCATTCCCCAAGAAATTGGCA-TGCTAAGATCTCTTTCTAACCTTAAAT
* * *
7977710 TGTCTGAAAACAAATTT-ACT-GGTCCAATCCCAACTTCAATAGGAAATTCGGT
381 TATCTGAAAAC-AATTTCA-TAGGTCCAATCCCAACATCAATAGGAAATTCGAT
* * *
7977762 AAACTTAACCCTTCTTCACCTT
1 AAACTTATCCATTCTTTACCTT
7977784 CACATTAACA
Statistics
Matches: 379, Mismatches: 63, Indels: 24
0.81 0.14 0.05
Matches are distributed among these distances:
431 13 0.03
432 351 0.93
433 15 0.04
ACGTcount: A:0.31, C:0.24, G:0.10, T:0.35
Consensus pattern (432 bp):
AAACTTATCCATTCTTTACCTTAACAACAACAAACTCTCAGGTCTCATTCCCTAAAAAACTAGGT
TCTTAAGATCTCTTTCTAACCTCGAACTATCTAACAACAATTTCACAGGTCCAATCCCAGCTTCA
ATAAGAAATTTGACAAACTTATCTGTTCTTTACCTTTACAACAACAAACTCTCTGATTCCATTCC
CAAAGAAATTGGATTGCTAAGATCTCTTTCTGACCTTGAATTGTCCAAAAACAAATTTACAAGTC
CAATCCCAGCTTCAATAGAAAATTTGACAAACTTAACCCTTATTCACTTTCACAATAACAAACTC
TCCAGATCCATTCCCCAAGAAATTGGCATGCTAAGATCTCTTTCTAACCTTAAATTATCTGAAAA
CAATTTCATAGGTCCAATCCCAACATCAATAGGAAATTCGAT
Found at i:7978764 original size:32 final size:33
Alignment explanation
Indices: 7978710--7978804 Score: 92
Period size: 32 Copynumber: 3.0 Consensus size: 33
7978700 ATGCTAATGC
* *
7978710 AATTATCTATTTTT-TGTCATTTTTTATTATTT
1 AATTATCTATTTTTATTTTATTTTTTATTATTT
7978742 AATTAT-TATTTTTATTTTA--TTTTATT-TTT
1 AATTATCTATTTTTATTTTATTTTTTATTATTT
* * *
7978771 TATTATCATATTTTTTATTTTATTTCTAATTATT
1 AATTATC-TA-TTTTTATTTTATTTTTTATTATT
7978805 ATTTTTTTTA
Statistics
Matches: 51, Mismatches: 5, Indels: 11
0.76 0.07 0.16
Matches are distributed among these distances:
29 8 0.16
30 7 0.14
31 9 0.18
32 20 0.39
34 5 0.10
35 2 0.04
ACGTcount: A:0.24, C:0.04, G:0.01, T:0.71
Consensus pattern (33 bp):
AATTATCTATTTTTATTTTATTTTTTATTATTT
Found at i:7978776 original size:15 final size:15
Alignment explanation
Indices: 7978747--7978789 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
7978737 TATTTAATTA
* *
7978747 TTATTTTTATTTTATT
1 TTATTTTT-TATTATC
7978763 TTATTTTTTATTATC
1 TTATTTTTTATTATC
*
7978778 ATATTTTTTATT
1 TTATTTTTTATT
7978790 TTATTTCTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
15 16 0.67
16 8 0.33
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.77
Consensus pattern (15 bp):
TTATTTTTTATTATC
Found at i:7978792 original size:37 final size:40
Alignment explanation
Indices: 7978728--7978811 Score: 104
Period size: 37 Copynumber: 2.2 Consensus size: 40
7978718 ATTTTTTGTC
*
7978728 ATTTTTTATTATTTAATTATTATTTTTATTT-T-ATT-TT
1 ATTTTTTATTATATAATTATTATTTTTATTTCTAATTATT
* *
7978765 ATTTTTTATTATCATATTTTTTA-TTTTATTTCTAATTATT
1 ATTTTTTATTAT-ATAATTATTATTTTTATTTCTAATTATT
7978805 ATTTTTT
1 ATTTTTT
7978812 TTACTTTACG
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
37 20 0.50
38 8 0.20
39 3 0.08
40 9 0.22
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.74
Consensus pattern (40 bp):
ATTTTTTATTATATAATTATTATTTTTATTTCTAATTATT
Found at i:7978811 original size:27 final size:27
Alignment explanation
Indices: 7978731--7978819 Score: 106
Period size: 27 Copynumber: 3.2 Consensus size: 27
7978721 TTTTGTCATT
7978731 TTTTATTATTTAATTATTATTTTTATTTTA
1 TTTTATT-TTTAATTATTA-TTTT-TTTTA
* * *
7978761 TTTTATTTTTTATTATCATATTTTTTA
1 TTTTATTTTTAATTATTATTTTTTTTA
*
7978788 TTTTATTTCTAATTATTATTTTTTTTA
1 TTTTATTTTTAATTATTATTTTTTTTA
*
7978815 CTTTA
1 TTTTA
7978820 CGTTTTTTAT
Statistics
Matches: 51, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
27 32 0.63
28 3 0.06
29 9 0.18
30 7 0.14
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.73
Consensus pattern (27 bp):
TTTTATTTTTAATTATTATTTTTTTTA
Found at i:7979038 original size:14 final size:13
Alignment explanation
Indices: 7978996--7979052 Score: 64
Period size: 14 Copynumber: 4.3 Consensus size: 13
7978986 ATTTGAATTA
7978996 TTAT-TATTATTT
1 TTATCTATTATTT
7979008 TTATCATCATT-TTT
1 TTATC-T-ATTATTT
7979022 TTATCTATTATTAT
1 TTATCTATTATT-T
*
7979036 TTATTTATTATTT
1 TTATCTATTATTT
7979049 TTAT
1 TTAT
7979053 TGAGTAATTT
Statistics
Matches: 39, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
12 7 0.18
13 8 0.21
14 21 0.54
15 3 0.08
ACGTcount: A:0.25, C:0.05, G:0.00, T:0.70
Consensus pattern (13 bp):
TTATCTATTATTT
Found at i:7981913 original size:16 final size:16
Alignment explanation
Indices: 7981892--7981929 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
7981882 GTGTCTAGAC
*
7981892 CGCCCTTTCGGGTTTT
1 CGCCCTTTCGAGTTTT
*
7981908 CGCCCTTTTGAGTTTT
1 CGCCCTTTCGAGTTTT
7981924 CGCCCT
1 CGCCCT
7981930 AAACACATCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.03, C:0.34, G:0.21, T:0.42
Consensus pattern (16 bp):
CGCCCTTTCGAGTTTT
Found at i:7993137 original size:12 final size:13
Alignment explanation
Indices: 7993115--7993194 Score: 51
Period size: 13 Copynumber: 6.2 Consensus size: 13
7993105 CGCAAATGCA
7993115 ATTATC-TTTTTT
1 ATTATCATTTTTT
*
7993127 TTTATCATTTTTT
1 ATTATCATTTTTT
* * *
7993140 ATTATTTAATTATT
1 ATTA-TCATTTTTT
*
7993154 ATTTTCA--TTTT
1 ATTATCATTTTTT
*
7993165 ATT-TTATTTTTT
1 ATTATCATTTTTT
7993177 ATTATCATATTTTCT
1 ATTATCAT-TTTT-T
7993192 ATT
1 ATT
7993195 TGATTTCTAA
Statistics
Matches: 51, Mismatches: 10, Indels: 11
0.71 0.14 0.15
Matches are distributed among these distances:
10 2 0.04
11 6 0.12
12 12 0.24
13 14 0.27
14 13 0.25
15 4 0.08
ACGTcount: A:0.23, C:0.06, G:0.00, T:0.71
Consensus pattern (13 bp):
ATTATCATTTTTT
Found at i:7993162 original size:27 final size:26
Alignment explanation
Indices: 7993131--7993181 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 26
7993121 TTTTTTTTTA
7993131 TCATTTT-TTATTATTTAATTATTATTT
1 TCATTTTATT-TTATTT-ATTATTATTT
*
7993158 TCATTTTATTTTATTTTTTATTAT
1 TCATTTTATTTTATTTATTATTAT
7993182 CATATTTTCT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 7 0.32
27 13 0.59
28 2 0.09
ACGTcount: A:0.24, C:0.04, G:0.00, T:0.73
Consensus pattern (26 bp):
TCATTTTATTTTATTTATTATTATTT
Found at i:7993441 original size:18 final size:17
Alignment explanation
Indices: 7993416--7993462 Score: 67
Period size: 18 Copynumber: 2.7 Consensus size: 17
7993406 ATATATTCGA
*
7993416 ATTATTATTATTTTTTT
1 ATTATTATTATTTATTT
7993433 ATCTATTATTATTTATTT
1 AT-TATTATTATTTATTT
*
7993451 ATTATTTTTATT
1 ATTATTATTATT
7993463 GAGTAATTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
17 11 0.41
18 16 0.59
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (17 bp):
ATTATTATTATTTATTT
Found at i:7993447 original size:14 final size:12
Alignment explanation
Indices: 7993420--7993462 Score: 52
Period size: 14 Copynumber: 3.4 Consensus size: 12
7993410 ATTCGAATTA
7993420 TTATTATT-TTT
1 TTATTATTATTT
7993431 TTATCTATTATTAT
1 TTAT-TATTATT-T
7993445 TTATTTATTATTT
1 TTA-TTATTATTT
7993458 TTATT
1 TTATT
7993463 GAGTAATTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
11 4 0.14
12 6 0.21
13 6 0.21
14 11 0.39
15 1 0.04
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.74
Consensus pattern (12 bp):
TTATTATTATTT
Found at i:7993455 original size:21 final size:21
Alignment explanation
Indices: 7993416--7993455 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
7993406 ATATATTCGA
*
7993416 ATTATTATTATTTTTTTATCT
1 ATTATTATTATTTTATTATCT
7993437 ATTATTATT-TATTTATTAT
1 ATTATTATTAT-TTTATTAT
7993456 TTTTATTGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.70
Consensus pattern (21 bp):
ATTATTATTATTTTATTATCT
Found at i:7994163 original size:12 final size:11
Alignment explanation
Indices: 7994143--7994173 Score: 53
Period size: 12 Copynumber: 2.7 Consensus size: 11
7994133 TCATTTTTTA
7994143 TCATCATTCAT
1 TCATCATTCAT
7994154 TCATTCATTCAT
1 TCA-TCATTCAT
7994166 TCATCATT
1 TCATCATT
7994174 GATTTTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 8 0.42
12 11 0.58
ACGTcount: A:0.26, C:0.26, G:0.00, T:0.48
Consensus pattern (11 bp):
TCATCATTCAT
Found at i:7995207 original size:144 final size:145
Alignment explanation
Indices: 7994953--7995220 Score: 421
Period size: 144 Copynumber: 1.9 Consensus size: 145
7994943 CCATTCTTTA
7994953 CTTTAACAACAACAAACTATCTAGTTCCATTCCTAAAGAAATTGGGTTGTTAAGATCTCTTTCTG
1 CTTTAACAACAACAAACTATCTAGTTCCATTCCTAAAGAAATTGGGTTGTTAAGATCTCTTTCTG
* * * **
7995018 ACCTCGAATGGTCTGACAACAATTTCATAGGTCCAATCTGAGCTTCAATAGAAAATTTGCTAAAC
66 ACCTCGAATGGTCTCAAAACAATTTCACAGGTCCAATCCCAGCTTCAATAGAAAATTTGCTAAAC
7995083 TTATCTTTTCTTGAC
131 TTATCTTTTCTTGAC
*
7995098 CTTT-ACAACAACAAACTCTCTAGTTCCATTCCTAAAGAAATTGGGTTGTTAAGATCTCTTTCTG
1 CTTTAACAACAACAAACTATCTAGTTCCATTCCTAAAGAAATTGGGTTGTTAAGATCTCTTTCTG
* * * * * *
7995162 ACCTCGACTTGTCTCAAAACAGTTTCACAGGTCTAATCCCTGCTTCAATAGGAAATTTG
66 ACCTCGAATGGTCTCAAAACAATTTCACAGGTCCAATCCCAGCTTCAATAGAAAATTTG
7995221 AGTAATTTGT
Statistics
Matches: 111, Mismatches: 12, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
144 107 0.96
145 4 0.04
ACGTcount: A:0.31, C:0.22, G:0.13, T:0.34
Consensus pattern (145 bp):
CTTTAACAACAACAAACTATCTAGTTCCATTCCTAAAGAAATTGGGTTGTTAAGATCTCTTTCTG
ACCTCGAATGGTCTCAAAACAATTTCACAGGTCCAATCCCAGCTTCAATAGAAAATTTGCTAAAC
TTATCTTTTCTTGAC
Found at i:7998346 original size:23 final size:24
Alignment explanation
Indices: 7998310--7998356 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
7998300 AATAAAAGAT
* *
7998310 ACATAAAGGGTGCCA-CTTGTCTA
1 ACATAAAAGCTGCCATCTTGTCTA
*
7998333 ACATAAAAGCTGCCATTTTGTCTA
1 ACATAAAAGCTGCCATCTTGTCTA
7998357 CTTCTAAGAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 13 0.65
24 7 0.35
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (24 bp):
ACATAAAAGCTGCCATCTTGTCTA
Found at i:8001027 original size:2 final size:2
Alignment explanation
Indices: 8001022--8001076 Score: 101
Period size: 2 Copynumber: 27.5 Consensus size: 2
8001012 AAACACAAAT
*
8001022 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AA
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
8001064 AC AC AC AC AC AC A
1 AC AC AC AC AC AC A
8001077 AAGAGAAGAT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.53, C:0.47, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:8004536 original size:26 final size:28
Alignment explanation
Indices: 8004484--8004543 Score: 79
Period size: 26 Copynumber: 2.2 Consensus size: 28
8004474 TTCCCTCATT
**
8004484 TTCCTCTTTTTTTTTTGTACATTAATATC
1 TTCCTCTTTTTTTTTTG-ACAACAATATC
8004513 TTCC-CTTTTTTTTTTG-CAACAATATC
1 TTCCTCTTTTTTTTTTGACAACAATATC
8004539 TTCCT
1 TTCCT
8004544 TCATCTTATT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
26 12 0.43
28 12 0.43
29 4 0.14
ACGTcount: A:0.17, C:0.22, G:0.03, T:0.58
Consensus pattern (28 bp):
TTCCTCTTTTTTTTTTGACAACAATATC
Found at i:8005014 original size:2 final size:2
Alignment explanation
Indices: 8005007--8005047 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
8004997 AAATTAGCTT
*
8005007 TA TA TA TA TA TA TA TA TA TA TA TG TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8005048 CATTCACTAT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.51
Consensus pattern (2 bp):
TA
Found at i:8006250 original size:15 final size:17
Alignment explanation
Indices: 8006230--8006262 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
8006220 ATTACAATTA
8006230 ATAA-TTTTATAA-GTT
1 ATAATTTTTATAATGTT
8006245 ATAATTTTTATAATGTT
1 ATAATTTTTATAATGTT
8006262 A
1 A
8006263 ACACAAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.25
16 8 0.50
17 4 0.25
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (17 bp):
ATAATTTTTATAATGTT
Found at i:8008678 original size:4 final size:4
Alignment explanation
Indices: 8008664--8008729 Score: 59
Period size: 4 Copynumber: 17.0 Consensus size: 4
8008654 GAAGAAAGGG
* *
8008664 GAAA GGAAA GAAA GAAA G-GA GAAA GGAAA GAAA GAAA G-GA GAAA G-AA
1 GAAA -GAAA GAAA GAAA GAAA GAAA -GAAA GAAA GAAA GAAA GAAA GAAA
*
8008711 -AAA GAAA GAAA GGAA GAAA
1 GAAA GAAA GAAA GAAA GAAA
8008730 AAGCTTGGTT
Statistics
Matches: 50, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
3 8 0.16
4 34 0.68
5 8 0.16
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:8008680 original size:20 final size:20
Alignment explanation
Indices: 8008655--8008729 Score: 114
Period size: 20 Copynumber: 3.6 Consensus size: 20
8008645 GATCAGTTGG
*
8008655 AAGAAAGGGGAAAGGAAAGA
1 AAGAAAGGAGAAAGGAAAGA
8008675 AAGAAAGGAGAAAGGAAAGA
1 AAGAAAGGAGAAAGGAAAGA
*
8008695 AAGAAAGGAGAAAGAAAAAGA
1 AAGAAAGGAGAAAG-GAAAGA
8008716 AAGAAAGGAAGAAA
1 AAGAAAGG-AGAAA
8008730 AAGCTTGGTT
Statistics
Matches: 51, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
20 33 0.65
21 13 0.25
22 5 0.10
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (20 bp):
AAGAAAGGAGAAAGGAAAGA
Found at i:8010437 original size:3 final size:3
Alignment explanation
Indices: 8010429--8010453 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
8010419 CTAAAGCTGT
8010429 TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
8010454 AGCTGATTGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:8011523 original size:15 final size:14
Alignment explanation
Indices: 8011487--8011522 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
8011477 TATGTTTACA
*
8011487 ATTTTTTAT-TTTT
1 ATTTTTTTTGTTTT
8011500 ATTTTTTTTGTTTT
1 ATTTTTTTTGTTTT
8011514 ATTTTTTTT
1 ATTTTTTTT
8011523 TTGTGTGTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
13 8 0.38
14 13 0.62
ACGTcount: A:0.11, C:0.00, G:0.03, T:0.86
Consensus pattern (14 bp):
ATTTTTTTTGTTTT
Found at i:8011531 original size:20 final size:20
Alignment explanation
Indices: 8011490--8011531 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
8011480 GTTTACAATT
*
8011490 TTTTATTTTTATTTTTTTTG
1 TTTTATTTTTATTTTTTGTG
8011510 TTTTATTTTT-TTTTTGTGTG
1 TTTTATTTTTATTTTT-TGTG
8011530 TT
1 TT
8011532 AAAAAATGGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 5 0.25
20 15 0.75
ACGTcount: A:0.07, C:0.00, G:0.10, T:0.83
Consensus pattern (20 bp):
TTTTATTTTTATTTTTTGTG
Found at i:8019143 original size:15 final size:15
Alignment explanation
Indices: 8019109--8019150 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
8019099 AAATGAGGAA
* *
8019109 AATGATGAAGTTGGT
1 AATGATGAAATTGAT
*
8019124 GATGATGAAATTGAT
1 AATGATGAAATTGAT
8019139 AATGA-GAAATTG
1 AATGATGAAATTG
8019151 CGTGCATATG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
14 7 0.30
15 16 0.70
ACGTcount: A:0.40, C:0.00, G:0.29, T:0.31
Consensus pattern (15 bp):
AATGATGAAATTGAT
Found at i:8027365 original size:15 final size:15
Alignment explanation
Indices: 8027345--8027386 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
8027335 TAAAACAATC
8027345 TTAAAATCAAAAACT
1 TTAAAATCAAAAACT
* **
8027360 TTAAAATCCAAAGTT
1 TTAAAATCAAAAACT
8027375 TTAAAATCAAAA
1 TTAAAATCAAAA
8027387 TATCTGATCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.57, C:0.12, G:0.02, T:0.29
Consensus pattern (15 bp):
TTAAAATCAAAAACT
Found at i:8028791 original size:13 final size:13
Alignment explanation
Indices: 8028773--8028797 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8028763 TTTCAGAAAA
8028773 TTTATAAAATCAT
1 TTTATAAAATCAT
8028786 TTTATAAAATCA
1 TTTATAAAATCA
8028798 CAATTTCTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTTATAAAATCAT
Found at i:8030046 original size:20 final size:20
Alignment explanation
Indices: 8030029--8030066 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
8030019 CCTCAAATCT
8030029 TACTCAAATAAGTCAAATTA
1 TACTCAAATAAGTCAAATTA
*
8030049 TACTCCAATAAGTCAAAT
1 TACTCAAATAAGTCAAAT
8030067 GGGGCCAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.47, C:0.18, G:0.05, T:0.29
Consensus pattern (20 bp):
TACTCAAATAAGTCAAATTA
Found at i:8034123 original size:13 final size:13
Alignment explanation
Indices: 8034105--8034129 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8034095 GGAAAATGAG
8034105 ATTTTATAAAATA
1 ATTTTATAAAATA
8034118 ATTTTATAAAAT
1 ATTTTATAAAAT
8034130 TTTTGAAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
ATTTTATAAAATA
Found at i:8035088 original size:19 final size:18
Alignment explanation
Indices: 8035055--8035090 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
8035045 TTAAAATAGA
8035055 TTATTTTAATTATTATTT
1 TTATTTTAATTATTATTT
*
8035073 TTATTTTATTTTATTATT
1 TTATTTTA-ATTATTATT
8035091 AAAAAAAAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (18 bp):
TTATTTTAATTATTATTT
Found at i:8038873 original size:13 final size:13
Alignment explanation
Indices: 8038855--8038879 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8038845 GGAAAATGAG
8038855 ATTTTATAAAATA
1 ATTTTATAAAATA
8038868 ATTTTATAAAAT
1 ATTTTATAAAAT
8038880 TTTTGAAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
ATTTTATAAAATA
Found at i:8040413 original size:36 final size:35
Alignment explanation
Indices: 8040370--8040505 Score: 164
Period size: 36 Copynumber: 3.8 Consensus size: 35
8040360 ACAATTAAAC
*
8040370 AATTAAGTTATTGGGTCTAATTGATTAAATTTGTTT
1 AATTAAGTTATTGGGCCTAATTGATTAAA-TTGTTT
* * **
8040406 AACTAAGTAATTAAGCCTAATTGATTAAAATTGTTT
1 AATTAAGTTATTGGGCCTAATTGATT-AAATTGTTT
* * * *
8040442 AATTAAATTGTTGGGCTTAATTAATTAAATTGTTT
1 AATTAAGTTATTGGGCCTAATTGATTAAATTGTTT
*
8040477 AATTAAGTTATTTGGCCTAATTGATTAAA
1 AATTAAGTTATTGGGCCTAATTGATTAAA
8040506 ATAAACAATT
Statistics
Matches: 81, Mismatches: 18, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
35 33 0.41
36 45 0.56
37 3 0.04
ACGTcount: A:0.36, C:0.05, G:0.14, T:0.45
Consensus pattern (35 bp):
AATTAAGTTATTGGGCCTAATTGATTAAATTGTTT
Found at i:8040501 original size:71 final size:72
Alignment explanation
Indices: 8040370--8040507 Score: 190
Period size: 71 Copynumber: 1.9 Consensus size: 72
8040360 ACAATTAAAC
* *
8040370 AATTAAGTTATTGGGTCTAATTGATTAAATTTGTTTAACTAAGTAATTAAGCCTAATTGATTAAA
1 AATTAAATTATTGGGTCTAATTAATTAAATTTGTTTAACTAAGTAATTAAGCCTAATTGATTAAA
8040435 ATTGTTT
66 ATTGTTT
* * * **
8040442 AATTAAATTGTTGGG-CTTAATTAATTAAA-TTGTTTAATTAAGTTATTTGGCCTAATTGATTAA
1 AATTAAATTATTGGGTC-TAATTAATTAAATTTGTTTAACTAAGTAATTAAGCCTAATTGATTAA
8040505 AAT
65 AAT
8040508 AAACAATTAA
Statistics
Matches: 58, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
71 34 0.59
72 24 0.41
ACGTcount: A:0.36, C:0.05, G:0.14, T:0.45
Consensus pattern (72 bp):
AATTAAATTATTGGGTCTAATTAATTAAATTTGTTTAACTAAGTAATTAAGCCTAATTGATTAAA
ATTGTTT
Found at i:8048097 original size:14 final size:14
Alignment explanation
Indices: 8048078--8048105 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
8048068 ATTATGTTCA
8048078 ATTGATCAAAAGGT
1 ATTGATCAAAAGGT
8048092 ATTGATCAAAAGGT
1 ATTGATCAAAAGGT
8048106 TGAATATTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.07, G:0.21, T:0.29
Consensus pattern (14 bp):
ATTGATCAAAAGGT
Found at i:8050012 original size:35 final size:35
Alignment explanation
Indices: 8049942--8050188 Score: 266
Period size: 35 Copynumber: 7.1 Consensus size: 35
8049932 CACTTGATTA
* *
8049942 AAATTGTTTAATTAAG---TTGTGCCTAATTAACT
1 AAATTGTTTAATTAAGTCATTGGGCCTAATTAATT
*
8049974 AAATTGTTTAATTAAATCATTGGGCCTAATTAATT
1 AAATTGTTTAATTAAGTCATTGGGCCTAATTAATT
*
8050009 AAATTGTTTAATTAAGTCATTGGGCCTAATTAGTT
1 AAATTGTTTAATTAAGTCATTGGGCCTAATTAATT
**** * ** *
8050044 AAATTAAACAATTAAGTTATTGGATCTAATTGATT
1 AAATTGTTTAATTAAGTCATTGGGCCTAATTAATT
*
8050079 AAATTTGTTTAATTAAGTCATTGGGCCTAATTGATT
1 AAA-TTGTTTAATTAAGTCATTGGGCCTAATTAATT
* * ** *
8050115 AAAATTATTTAATTAAATTGTTGGGCTTAATTAATT
1 -AAATTGTTTAATTAAGTCATTGGGCCTAATTAATT
* * *
8050151 AAATTATTTAATTAAGTTATTGGGCCTAATTGATT
1 AAATTGTTTAATTAAGTCATTGGGCCTAATTAATT
8050186 AAA
1 AAA
8050189 ATAAACAATT
Statistics
Matches: 179, Mismatches: 31, Indels: 7
0.82 0.14 0.03
Matches are distributed among these distances:
32 15 0.08
35 110 0.61
36 51 0.28
37 3 0.02
ACGTcount: A:0.36, C:0.07, G:0.13, T:0.43
Consensus pattern (35 bp):
AAATTGTTTAATTAAGTCATTGGGCCTAATTAATT
Found at i:8050161 original size:142 final size:139
Alignment explanation
Indices: 8049935--8050209 Score: 392
Period size: 142 Copynumber: 2.0 Consensus size: 139
8049925 TCTCAAGCAC
* *
8049935 TTGATTAAAATTGTTTAATTAAGTTGTGCCTAATTAACTAAATTGTTTAATTAAATCATTGGGCC
1 TTGATTAAAATTGTTTAATTAAGTTGGGCCTAATTAACTAAATTATTTAATTAAATCATTGGGCC
* *
8050000 TAATTAATTAAATTGTTTAATTAAGTCATTGGGCCTAATT-AGTTAAATTAAACAATTAAGTT-A
66 TAATTAATTAAATTATTTAATTAAGTCATTGGGCCTAATTGA-TTAAAATAAACAATTAAGTTAA
8050063 TTGGATCTAA
130 TTGGATCTAA
* * * **
8050073 TTGATTAAATTTGTTTAATTAAGTCATTGGGCCTAATTGATTAAAATTATTTAATTAAATTGTTG
1 TTGATTAAAATTGTTTAATTAAG---TTGGGCCTAATTAACT-AAATTATTTAATTAAATCATTG
* *
8050138 GGCTTAATTAATTAAATTATTTAATTAAGTTATTGGGCCTAATTGATTAAAATAAACAATTAAGT
62 GGCCTAATTAATTAAATTATTTAATTAAGTCATTGGGCCTAATTGATTAAAATAAACAATTAAGT
8050203 TAATTGG
127 TAATTGG
8050210 GCTTCTAAAG
Statistics
Matches: 120, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
138 22 0.18
141 13 0.11
142 79 0.66
143 6 0.05
ACGTcount: A:0.37, C:0.07, G:0.13, T:0.43
Consensus pattern (139 bp):
TTGATTAAAATTGTTTAATTAAGTTGGGCCTAATTAACTAAATTATTTAATTAAATCATTGGGCC
TAATTAATTAAATTATTTAATTAAGTCATTGGGCCTAATTGATTAAAATAAACAATTAAGTTAAT
TGGATCTAA
Found at i:8050199 original size:35 final size:35
Alignment explanation
Indices: 8049935--8050211 Score: 256
Period size: 35 Copynumber: 7.9 Consensus size: 35
8049925 TCTCAAGCAC
* *
8049935 TTGATTAAAATTGTTTAATTAAG---TTGTGCCTAA
1 TTGATT-AAATTATTTAATTAAGTTATTGGGCCTAA
* * * * *
8049968 TTAACTAAATTGTTTAATTAAATCATTGGGCCTAA
1 TTGATTAAATTATTTAATTAAGTTATTGGGCCTAA
* * *
8050003 TTAATTAAATTGTTTAATTAAGTCATTGGGCCTAA
1 TTGATTAAATTATTTAATTAAGTTATTGGGCCTAA
*** **
8050038 TT-AGTTAAATTAAACAATTAAGTTATTGGATCTAA
1 TTGA-TTAAATTATTTAATTAAGTTATTGGGCCTAA
* *
8050073 TTGATTAAATTTGTTTAATTAAGTCATTGGGCCTAA
1 TTGATTAAA-TTATTTAATTAAGTTATTGGGCCTAA
* * *
8050109 TTGATTAAAATTATTTAATTAAATTGTTGGGCTTAA
1 TTGATT-AAATTATTTAATTAAGTTATTGGGCCTAA
*
8050145 TTAATTAAATTATTTAATTAAGTTATTGGGCCTAA
1 TTGATTAAATTATTTAATTAAGTTATTGGGCCTAA
* ***
8050180 TTGATTAAAATAAACAATTAAGTTAATTGGGC
1 TTGATTAAATTATTTAATTAAGTT-ATTGGGC
8050212 TTCTAAAGGA
Statistics
Matches: 202, Mismatches: 34, Indels: 13
0.81 0.14 0.05
Matches are distributed among these distances:
32 15 0.07
33 4 0.02
34 1 0.00
35 120 0.59
36 59 0.29
37 3 0.01
ACGTcount: A:0.37, C:0.07, G:0.14, T:0.43
Consensus pattern (35 bp):
TTGATTAAATTATTTAATTAAGTTATTGGGCCTAA
Found at i:8050213 original size:71 final size:70
Alignment explanation
Indices: 8049983--8050213 Score: 286
Period size: 71 Copynumber: 3.3 Consensus size: 70
8049973 TAAATTGTTT
* * *
8049983 AATTAAATCATTGGGCCTAATTAATTAAATTGTTTAATTAAGTCATTGGGCCTAATT-AGTTAAA
1 AATTAAGTTATTGGGCTTAATTAATTAAATTGTTTAATTAAGTCATTGGGCCTAATTGA-TTAAA
*
8050047 TTAAAC
65 ATAAAC
* *
8050053 AATTAAGTTATT-GGATCTAATTGATTAAATTTGTTTAATTAAGTCATTGGGCCTAATTGATTAA
1 AATTAAGTTATTGGGCT-TAATTAATTAAA-TTGTTTAATTAAGTCATTGGGCCTAATTGATTAA
***
8050117 AATTATTT
64 AA-TAAAC
* * * *
8050125 AATTAAATTGTTGGGCTTAATTAATTAAATTATTTAATTAAGTTATTGGGCCTAATTGATTAAAA
1 AATTAAGTTATTGGGCTTAATTAATTAAATTGTTTAATTAAGTCATTGGGCCTAATTGATTAAAA
8050190 TAAAC
66 TAAAC
8050195 AATTAAGTTAATTGGGCTT
1 AATTAAGTT-ATTGGGCTT
8050214 CTAAAGGACT
Statistics
Matches: 135, Mismatches: 20, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
69 2 0.01
70 31 0.23
71 75 0.56
72 24 0.18
73 3 0.02
ACGTcount: A:0.37, C:0.07, G:0.14, T:0.42
Consensus pattern (70 bp):
AATTAAGTTATTGGGCTTAATTAATTAAATTGTTTAATTAAGTCATTGGGCCTAATTGATTAAAA
TAAAC
Found at i:8056280 original size:18 final size:19
Alignment explanation
Indices: 8056245--8056287 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
8056235 AATAAAAGCA
**
8056245 AAAACTAAAAAGTGAATA-T
1 AAAA-TAAAAAGCAAATAGT
8056264 AAAATAAAAAGCAAATAGT
1 AAAATAAAAAGCAAATAGT
8056283 AAAAT
1 AAAAT
8056288 TATCATAGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 11 0.52
19 10 0.48
ACGTcount: A:0.67, C:0.05, G:0.09, T:0.19
Consensus pattern (19 bp):
AAAATAAAAAGCAAATAGT
Found at i:8060210 original size:20 final size:19
Alignment explanation
Indices: 8060185--8060222 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
8060175 AAGATTTCTT
8060185 ACACAAAAAAATATAATTTC
1 ACACAAAAAAATA-AATTTC
*
8060205 ACACAATAAAATAAATTT
1 ACACAAAAAAATAAATTT
8060223 TAATGTTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.61, C:0.13, G:0.00, T:0.26
Consensus pattern (19 bp):
ACACAAAAAAATAAATTTC
Found at i:8060254 original size:17 final size:16
Alignment explanation
Indices: 8060217--8060259 Score: 61
Period size: 17 Copynumber: 2.6 Consensus size: 16
8060207 ACAATAAAAT
8060217 AAATTTTAATGTTAAA
1 AAATTTTAATGTTAAA
8060233 AAATTTTAAT-TTAATTA
1 AAATTTTAATGTTAA--A
8060250 AAATTTTAAT
1 AAATTTTAAT
8060260 ATAAATGTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.16
16 10 0.40
17 11 0.44
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (16 bp):
AAATTTTAATGTTAAA
Found at i:8062113 original size:22 final size:20
Alignment explanation
Indices: 8062078--8062119 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 20
8062068 AAAAATTTTT
8062078 ATTTAAAATTTTTTAAAATA
1 ATTTAAAATTTTTTAAAATA
*
8062098 ATTTAAGAGATTTTTTTAAATA
1 ATTTAA-A-ATTTTTTAAAATA
8062120 TTATATTCCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 6 0.32
21 1 0.05
22 12 0.63
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (20 bp):
ATTTAAAATTTTTTAAAATA
Found at i:8067286 original size:15 final size:14
Alignment explanation
Indices: 8067262--8067293 Score: 55
Period size: 15 Copynumber: 2.2 Consensus size: 14
8067252 ATGATTAATG
8067262 ATAAGAGTTACAGA
1 ATAAGAGTTACAGA
8067276 ATAATGAGTTACAGA
1 ATAA-GAGTTACAGA
8067291 ATA
1 ATA
8067294 TTGATTTGGC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.24
15 13 0.76
ACGTcount: A:0.50, C:0.06, G:0.19, T:0.25
Consensus pattern (14 bp):
ATAAGAGTTACAGA
Found at i:8067709 original size:25 final size:26
Alignment explanation
Indices: 8067675--8067724 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 26
8067665 TCCAACTTTT
8067675 AATAAAATATTAATA-TTAAATTATA
1 AATAAAATATTAATATTTAAATTATA
8067700 AATAAAATATTAATATTTAAATTAT
1 AATAAAATATTAATATTTAAATTAT
8067725 CAATTATTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 15 0.62
26 9 0.38
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (26 bp):
AATAAAATATTAATATTTAAATTATA
Found at i:8073391 original size:20 final size:20
Alignment explanation
Indices: 8073366--8073407 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
8073356 TAAGTAAGTA
8073366 TAGTATGTGATCGAAATAGG
1 TAGTATGTGATCGAAATAGG
*
8073386 TAGTATTTGATCGAAATAGG
1 TAGTATGTGATCGAAATAGG
8073406 TA
1 TA
8073408 TGATTGAGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.36, C:0.05, G:0.26, T:0.33
Consensus pattern (20 bp):
TAGTATGTGATCGAAATAGG
Found at i:8076644 original size:74 final size:74
Alignment explanation
Indices: 8076523--8076672 Score: 237
Period size: 74 Copynumber: 2.0 Consensus size: 74
8076513 TTTTGCATCA
* *
8076523 AACTTCAGTTGTTGCAAACCATAAAAATATCTAAGTATTCAACCTCTAATGTTAATGGAAGACGG
1 AACTTCAGTTGTTGCAAACCACAAAAATATCTAAGTATTCAACCTCTAATCTTAATGGAAGACGG
8076588 AACAACTCC
66 AACAACTCC
* * * * *
8076597 AACTTCGGTTGTTGCAAACCACAAAACTATCTAATTGTTCAACCTCTAATCTTAATGGAAGAGGG
1 AACTTCAGTTGTTGCAAACCACAAAAATATCTAAGTATTCAACCTCTAATCTTAATGGAAGACGG
8076662 AACAACTCC
66 AACAACTCC
8076671 AA
1 AA
8076673 AGGAAGAATG
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
74 69 1.00
ACGTcount: A:0.38, C:0.21, G:0.14, T:0.27
Consensus pattern (74 bp):
AACTTCAGTTGTTGCAAACCACAAAAATATCTAAGTATTCAACCTCTAATCTTAATGGAAGACGG
AACAACTCC
Found at i:8076943 original size:11 final size:11
Alignment explanation
Indices: 8076927--8076958 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
8076917 ATTAACGAAA
8076927 ATTTTCAACGG
1 ATTTTCAACGG
*
8076938 ATTTTCAATGG
1 ATTTTCAACGG
8076949 ATTTTCAACG
1 ATTTTCAACG
8076959 AAAATTTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.41
Consensus pattern (11 bp):
ATTTTCAACGG
Found at i:8077603 original size:24 final size:23
Alignment explanation
Indices: 8077568--8077613 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
8077558 AGATTTATAA
8077568 TAAAATTATTAATATAATATATT
1 TAAAATTATTAATATAATATATT
* *
8077591 TAAAATATATTAATTTATTATAT
1 TAAAAT-TATTAATATAATATAT
8077614 CTATGTATAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 6 0.30
24 14 0.70
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (23 bp):
TAAAATTATTAATATAATATATT
Found at i:8077653 original size:2 final size:2
Alignment explanation
Indices: 8077646--8077696 Score: 65
Period size: 2 Copynumber: 27.0 Consensus size: 2
8077636 TAGCTATAGA
8077646 AT AT AT AT AT AT AT AT AT A- AT AT AGT -T AT AT AT AT AT AT -T
1 AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT
8077686 AT A- AT AT AT AT
1 AT AT AT AT AT AT
8077697 NNNNNNNNNN
Statistics
Matches: 44, Mismatches: 0, Indels: 10
0.81 0.00 0.19
Matches are distributed among these distances:
1 4 0.09
2 39 0.89
3 1 0.02
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8077667 original size:19 final size:19
Alignment explanation
Indices: 8077640--8077696 Score: 73
Period size: 19 Copynumber: 3.1 Consensus size: 19
8077630 GAATCATAGC
*
8077640 TATAGAATATATATATATA
1 TATATAATATATATATATA
8077659 TATATAATATAGT-TATATA
1 TATATAATATA-TATATATA
*
8077678 TATATATTATA-ATATATA
1 TATATAATATATATATATA
8077696 T
1 T
8077697 NNNNNNNNNN
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
18 7 0.21
19 26 0.76
20 1 0.03
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (19 bp):
TATATAATATATATATATA
Found at i:8077763 original size:2 final size:2
Alignment explanation
Indices: 8077756--8077804 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
8077746 NNNNNNNNNN
8077756 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8077798 AT AT AT A
1 AT AT AT A
8077805 AACCTGCATT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8088502 original size:445 final size:445
Alignment explanation
Indices: 8087600--8088720 Score: 1417
Period size: 445 Copynumber: 2.5 Consensus size: 445
8087590 ATTTTTGTGA
* * * * * *
8087600 TTTTTATTATTGTAGCCTTTCATGAGCCTTAATCTTATCGTGAGGTTAGTATGGACCTTCATTGA
1 TTTTTATTATTGTAGCCTTGCATGAGCCTTAATCTTATCGTGAGGCTAGTATTGACCCTCAATGG
* * * *
8087665 CAACAAGTTATGGATGACAAGCTCCAAGCTCTTGAAAAAACTCATACTTGGTCTGGTTGACCAAC
66 CAACAAGTTATGGATGACGAGCTCCAAGCTCTTGAAAAAACTCATACTTGGTTTAGTTGACCTAC
* * ** *
8087730 TCATGGTAAGACTTTTATTGGTTGCAAATGGCTTTATAAAATCAAAATCCATTTAAATGACTCTA
131 TCATGGTAAGACTCTTATTGGTTGCAAATGGGTTTATAAAATCAAAATCCGCTTAAATGGCTCTA
* *
8087795 TTGAATGTTATAAAGCTTGCTTAGTGACCAAGGGTTTCCTTTGGTACTTCTTCTTAGTTTTTTAC
196 TTGAATGTTATAAAGCTTGTTTAGTGACCAAGGGTTTCCTTTGATACTTCTTCTTAGTTTTTTAC
* *
8087860 AAACTCATCTGTTGAGTTATTTCACGATTATACTACAAATACTTCCGACGAGCTTCCTCATATTC
261 AAACTCATCTGTTGAGTTATTTCACGATTATACTACAAATACTTCCAACGAACTTCCTCATATTC
* * * *
8087925 CTATCATAGCTTTTGCTATTGTAAAATATAATCCTATTGTTGATACTATAATTGCTCCCAACCTT
326 CTATCATAGCTCTTGCTATTGTAAAATATAATCCTACTGTTGATACTATAACTACTCCCAACCTT
* ** *
8087990 TGTTGTTTTACTCAAGTAAGAAAAACTCCTCATCATCTTTGTTATTATTATTGTT
391 TGTTGTTCTACTCAAGTAAGAAAAACTCCTCATCATCTCCGTGATTATTATTGTT
* * *
8088045 TTTTTATTATTGTAGCCTTGCGTGAGCCTTAATCTTATCATGAGGCTAATATTGACCCTCAATGG
1 TTTTTATTATTGTAGCCTTGCATGAGCCTTAATCTTATCGTGAGGCTAGTATTGACCCTCAATGG
* * * * * * *
8088110 CAACTAGTTATGGATGACGAGCTCCAAGCTCTTGAAAATACTCATCCTTGCTTTAGTTTACTTGC
66 CAACAAGTTATGGATGACGAGCTCCAAGCTCTTGAAAAAACTCATACTTGGTTTAGTTGACCTAC
*
8088175 TCATGGTAAGACACTTATTGGTTGCAAATGGGTTTATAAAATCAAAATCCGCTTAAATGGCTCTA
131 TCATGGTAAGACTCTTATTGGTTGCAAATGGGTTTATAAAATCAAAATCCGCTTAAATGGCTCTA
* * * * *
8088240 TCGAAAGTTATAAAGCTTGTTTAGTAACCAAGGGTTTCCTTTTATACTT-TTTTATAGTTTTTTA
196 TTGAATGTTATAAAGCTTGTTTAGTGACCAAGGGTTTCCTTTGATACTTCTTCT-TAGTTTTTTA
* * ** * * *
8088304 CTAACTTATCTGTTGAGTTAATTT-GTGATTATACTACAAATACTTTCAATGAACTTCTTCATAT
260 CAAACTCATCTGTTGAGTT-ATTTCACGATTATACTACAAATACTTCCAACGAACTTCCTCATAT
* * * * * * *
8088368 TCCTGTCCTATCTCTTGC-ATTTGTAGAATCTAATCCTACTGTTGATATTTGTAACTACTCCCAA
324 TCCTATCATAGCTCTTGCTA-TTGTAAAATATAATCCTACTGTTGATA-CTATAACTACTCCCAA
* * * *
8088432 CCTTTGTTGTTCTACTCGAGTAAGAAAAACTCTTTATCATCTCCGTGGTTATTATTG-T
387 CCTTTGTTGTTCTACTCAAGTAAGAAAAACTCCTCATCATCTCCGTGATTATTATTGTT
* * * * *
8088490 TTTTTGTTATTGTAGACTTGCATGA-TCTCTGATCTTATTGTGAGGCTAGTATTGACCCT-AATT
1 TTTTTATTATTGTAGCCTTGCATGAGCCT-TAATCTTATCGTGAGGCTAGTATTGACCCTCAA-T
* * * * *
8088553 GGCAACAAGTTATGGATGATGAGCTCTAAGCTCTTGAAAAAACTCATAATTGGTTTAGTCGGCCT
64 GGCAACAAGTTATGGATGACGAGCTCCAAGCTCTTGAAAAAACTCATACTTGGTTTAGTTGACCT
* * * * * * *
8088618 ACTCTTGGTAAGACTCTAATTAGTTGTAAATGGGTTTATAAAATTAAAATCTGCTTAGATGGCTC
129 ACTCATGGTAAGACTCTTATTGGTTGCAAATGGGTTTATAAAATCAAAATCCGCTTAAATGGCTC
* **
8088683 TATTGGATGTTATAAAGCACGTTTAGTGACCAAGGGTT
194 TATTGAATGTTATAAAGCTTGTTTAGTGACCAAGGGTT
8088721 ATATTCAAGA
Statistics
Matches: 575, Mismatches: 95, Indels: 12
0.84 0.14 0.02
Matches are distributed among these distances:
444 8 0.01
445 502 0.87
446 65 0.11
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.39
Consensus pattern (445 bp):
TTTTTATTATTGTAGCCTTGCATGAGCCTTAATCTTATCGTGAGGCTAGTATTGACCCTCAATGG
CAACAAGTTATGGATGACGAGCTCCAAGCTCTTGAAAAAACTCATACTTGGTTTAGTTGACCTAC
TCATGGTAAGACTCTTATTGGTTGCAAATGGGTTTATAAAATCAAAATCCGCTTAAATGGCTCTA
TTGAATGTTATAAAGCTTGTTTAGTGACCAAGGGTTTCCTTTGATACTTCTTCTTAGTTTTTTAC
AAACTCATCTGTTGAGTTATTTCACGATTATACTACAAATACTTCCAACGAACTTCCTCATATTC
CTATCATAGCTCTTGCTATTGTAAAATATAATCCTACTGTTGATACTATAACTACTCCCAACCTT
TGTTGTTCTACTCAAGTAAGAAAAACTCCTCATCATCTCCGTGATTATTATTGTT
Found at i:8091652 original size:55 final size:54
Alignment explanation
Indices: 8091568--8091795 Score: 190
Period size: 55 Copynumber: 4.1 Consensus size: 54
8091558 TTATTTGAGT
* *
8091568 GTGTCACAGCTATTCCTGGTGTGTTGTGGGTTAACTAGTTTTTTTGGTTGTTAGC
1 GTGTCACGGCTATTCCTGGCGTGTTGTGGGTTAACTAGTTTTTTTGGTT-TTAGC
* * ** * * *
8091623 GTGTCACGGCTGTTCTTGGCGTGTTGTGGGTTAACTAAATTTATGGGTTTTTGAC
1 GTGTCACGGCTATTCCTGGCGTGTTGTGGGTTAACTAGTTTTTTTGGTTTTAG-C
* * * * * *
8091678 GTGTCATGGCTGTTCCTGGCGTGTCGTGGGTTAATTGGTTTTTTAAT-GTTTTGGGC
1 GTGTCACGGCTATTCCTGGCGTGTTGTGGGTTAACTAGTTTTTT--TGGTTTT-AGC
* * * * * *
8091734 ATATCACGGCTATTCTTGGCATGTTGTGGGTAAACT-GGTTTTTTGAGTTTTTAGC
1 GTGTCACGGCTATTCCTGGCGTGTTGTGGGTTAACTAGTTTTTTTG-G-TTTTAGC
8091789 GTGTCAC
1 GTGTCAC
8091796 AACTGTTGGT
Statistics
Matches: 134, Mismatches: 32, Indels: 14
0.74 0.18 0.08
Matches are distributed among these distances:
53 1 0.01
54 3 0.02
55 92 0.69
56 37 0.28
57 1 0.01
ACGTcount: A:0.14, C:0.13, G:0.30, T:0.43
Consensus pattern (54 bp):
GTGTCACGGCTATTCCTGGCGTGTTGTGGGTTAACTAGTTTTTTTGGTTTTAGC
Found at i:8091848 original size:20 final size:21
Alignment explanation
Indices: 8091823--8091909 Score: 86
Period size: 23 Copynumber: 3.9 Consensus size: 21
8091813 GTTAGTAATT
*
8091823 ACAGTGAT-TGACGTGTCATG
1 ACAGTGATATGGCGTGTCATG
*
8091843 ACAGTGATGCATGGCGTGTCACG
1 ACAGTGAT--ATGGCGTGTCATG
8091866 ACAGTGATGCATGGCGTGTCATG
1 ACAGTGAT--ATGGCGTGTCATG
*
8091889 ACACTGATGCATGGCGTGTCA
1 ACAGTGAT--ATGGCGTGTCA
8091910 CGATACTGAT
Statistics
Matches: 60, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
20 8 0.13
23 52 0.87
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (21 bp):
ACAGTGATATGGCGTGTCATG
Found at i:8091868 original size:23 final size:23
Alignment explanation
Indices: 8091834--8091937 Score: 154
Period size: 23 Copynumber: 4.5 Consensus size: 23
8091824 CAGTGATTGA
* *
8091834 CGTGTCATGACAGTGATGCATGG
1 CGTGTCACGACACTGATGCATGG
*
8091857 CGTGTCACGACAGTGATGCATGG
1 CGTGTCACGACACTGATGCATGG
*
8091880 CGTGTCATGACACTGATGCATGG
1 CGTGTCACGACACTGATGCATGG
*
8091903 CGTGTCACGATACTGATGCATGG
1 CGTGTCACGACACTGATGCATGG
*
8091926 CATGTCACGACA
1 CGTGTCACGACA
8091938 TTTGACTTGA
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 74 1.00
ACGTcount: A:0.23, C:0.22, G:0.31, T:0.24
Consensus pattern (23 bp):
CGTGTCACGACACTGATGCATGG
Found at i:8091953 original size:31 final size:32
Alignment explanation
Indices: 8091918--8092023 Score: 146
Period size: 31 Copynumber: 3.4 Consensus size: 32
8091908 CACGATACTG
* * * *
8091918 ATGCATGGCATGTCACGACATTTGAC-TTGAT
1 ATGCATGGCGTGTTACAACATTTTACGTTGAT
*
8091949 ATGCATGGTGTGTTACAACATTTTACGTT-AT
1 ATGCATGGCGTGTTACAACATTTTACGTTGAT
8091980 ATGCATGGCGTGTTACAACATTTTACGTTG-T
1 ATGCATGGCGTGTTACAACATTTTACGTTGAT
8092011 ATGCATGGCGTGT
1 ATGCATGGCGTGT
8092024 AATAATATGA
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
31 65 0.97
32 2 0.03
ACGTcount: A:0.24, C:0.16, G:0.24, T:0.37
Consensus pattern (32 bp):
ATGCATGGCGTGTTACAACATTTTACGTTGAT
Found at i:8092193 original size:79 final size:79
Alignment explanation
Indices: 8092062--8092221 Score: 293
Period size: 79 Copynumber: 2.0 Consensus size: 79
8092052 TGGCATGTAT
*
8092062 TGTGTAAAATGATTGACAATATTTTTTTTCTTCAAAATTTCAGTGGGGTTCCAATTGTGCAACTT
1 TGTGTAAAATGATTGACAATATTTTTTTTCTTCAAAATTTCAGTAGGGTTCCAATTGTGCAACTT
*
8092127 GTGATAAGACACGA
66 ATGATAAGACACGA
8092141 TGTGTAAAATGATTGACAATATTTTTTTTCTTCAAAATTTCAGTAGGGTTCCAATTGTGCAACTT
1 TGTGTAAAATGATTGACAATATTTTTTTTCTTCAAAATTTCAGTAGGGTTCCAATTGTGCAACTT
*
8092206 ATGATAAGACATGA
66 ATGATAAGACACGA
8092220 TG
1 TG
8092222 GTTAGTGGGT
Statistics
Matches: 78, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
79 78 1.00
ACGTcount: A:0.31, C:0.12, G:0.18, T:0.39
Consensus pattern (79 bp):
TGTGTAAAATGATTGACAATATTTTTTTTCTTCAAAATTTCAGTAGGGTTCCAATTGTGCAACTT
ATGATAAGACACGA
Found at i:8095887 original size:31 final size:31
Alignment explanation
Indices: 8095832--8095921 Score: 92
Period size: 31 Copynumber: 2.9 Consensus size: 31
8095822 GCCAATTGTG
* *
8095832 GTGACACGCTGAGTGCAAGT-AGACTTATAGA
1 GTGACACGCTGAGT-TAATTCAGACTTATAGA
* *
8095863 GTGACACGCTGAGTTAATTCAGACTTATGGC
1 GTGACACGCTGAGTTAATTCAGACTTATAGA
* * * *
8095894 GTGACACGTTGACTTAATGCATACTTAT
1 GTGACACGCTGAGTTAATTCAGACTTAT
8095922 GGCATGACAT
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
30 3 0.06
31 47 0.94
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (31 bp):
GTGACACGCTGAGTTAATTCAGACTTATAGA
Found at i:8095922 original size:31 final size:31
Alignment explanation
Indices: 8095852--8095939 Score: 104
Period size: 31 Copynumber: 2.8 Consensus size: 31
8095842 GAGTGCAAGT
* * * *
8095852 AGACTTATAGAGTGACACGCTGAGTTAATTC
1 AGACTTATGGCGTGACACGCTGACTTAATGC
*
8095883 AGACTTATGGCGTGACACGTTGACTTAATGC
1 AGACTTATGGCGTGACACGCTGACTTAATGC
* * *
8095914 ATACTTATGGCATGACATGCTGACTT
1 AGACTTATGGCGTGACACGCTGACTT
8095940 CTTGCAGTCT
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 48 1.00
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (31 bp):
AGACTTATGGCGTGACACGCTGACTTAATGC
Found at i:8096734 original size:33 final size:33
Alignment explanation
Indices: 8096670--8096735 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
8096660 TCACAAGCGA
* *** *
8096670 CGGCCCAATTGTTATGACACTTTGAGTGGAAGC
1 CGGCCCAATGGTTATGACACACCGAGAGGAAGC
8096703 CGGCCCAATGGTTATGACACACCGAGAGGAAGC
1 CGGCCCAATGGTTATGACACACCGAGAGGAAGC
8096736 AGATTTATGG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.27, C:0.24, G:0.29, T:0.20
Consensus pattern (33 bp):
CGGCCCAATGGTTATGACACACCGAGAGGAAGC
Found at i:8097072 original size:38 final size:38
Alignment explanation
Indices: 8097021--8097120 Score: 98
Period size: 38 Copynumber: 2.6 Consensus size: 38
8097011 AAAGAAAAAA
*
8097021 AATTCTTGATATAAAATTAATTGT-TATGGGCAAAAA-AATT
1 AATT-TTG-TATAAAATTAATTGTGTAT--ACAAAAACAATT
8097061 AATTTTGTATAAAA-TATATTGTGTATACAAAAACAATT
1 AATTTTGTATAAAATTA-ATTGTGTATACAAAAACAATT
* * *
8097099 AATTCTGTATACAATGAATTGT
1 AATTTTGTATAAAATTAATTGT
8097121 ATAAAATAAA
Statistics
Matches: 52, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
37 8 0.15
38 33 0.63
39 7 0.13
40 4 0.08
ACGTcount: A:0.44, C:0.06, G:0.11, T:0.39
Consensus pattern (38 bp):
AATTTTGTATAAAATTAATTGTGTATACAAAAACAATT
Found at i:8097132 original size:14 final size:16
Alignment explanation
Indices: 8097118--8097199 Score: 66
Period size: 16 Copynumber: 5.2 Consensus size: 16
8097108 TACAATGAAT
8097118 TGTATAAAATAAATTA
1 TGTATAAAATAAATTA
* *
8097134 TGTATATAAAAAAATTG
1 TGTATA-AAATAAATTA
*
8097151 TGTATAAAATTAA-T-
1 TGTATAAAATAAATTA
*
8097165 TGTATAAAA-ATAATTC
1 TGTATAAAATA-AATTA
8097181 TGTATACAAA-AAA-TA
1 TGTATA-AAATAAATTA
8097196 TGTA
1 TGTA
8097200 CAGACAAGGG
Statistics
Matches: 55, Mismatches: 6, Indels: 11
0.76 0.08 0.15
Matches are distributed among these distances:
14 11 0.20
15 7 0.13
16 19 0.35
17 18 0.33
ACGTcount: A:0.52, C:0.02, G:0.09, T:0.37
Consensus pattern (16 bp):
TGTATAAAATAAATTA
Found at i:8097156 original size:33 final size:31
Alignment explanation
Indices: 8097118--8097199 Score: 96
Period size: 30 Copynumber: 2.6 Consensus size: 31
8097108 TACAATGAAT
*
8097118 TGTATAAAATAAATTATGTATATAAAAAAATTG
1 TGTATAAAATAAA-TATGTATA-AAAAAAATTC
* *
8097151 TGTATAAAATTAAT-TGTATAAAAATAATTC
1 TGTATAAAATAAATATGTATAAAAAAAATTC
8097181 TGTATACAAA-AAATATGTA
1 TGTATA-AAATAAATATGTA
8097200 CAGACAAGGG
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
30 17 0.40
31 13 0.30
32 1 0.02
33 12 0.28
ACGTcount: A:0.52, C:0.02, G:0.09, T:0.37
Consensus pattern (31 bp):
TGTATAAAATAAATATGTATAAAAAAAATTC
Found at i:8097173 original size:47 final size:47
Alignment explanation
Indices: 8097099--8097193 Score: 129
Period size: 47 Copynumber: 2.0 Consensus size: 47
8097089 AAAAACAATT
* *
8097099 AATTCTGTATACAATGAATTGTAT-AAAATAAATTATGTATATAAAAA
1 AATTCTGTATAAAATGAATTGTATAAAAAT-AATTATGTATACAAAAA
* * *
8097146 AATTGTGTATAAAATTAATTGTATAAAAATAATTCTGTATACAAAAA
1 AATTCTGTATAAAATGAATTGTATAAAAATAATTATGTATACAAAAA
8097193 A
1 A
8097194 TATGTACAGA
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
47 37 0.88
48 5 0.12
ACGTcount: A:0.52, C:0.04, G:0.08, T:0.36
Consensus pattern (47 bp):
AATTCTGTATAAAATGAATTGTATAAAAATAATTATGTATACAAAAA
Found at i:8098884 original size:93 final size:93
Alignment explanation
Indices: 8098725--8098935 Score: 332
Period size: 93 Copynumber: 2.3 Consensus size: 93
8098715 TACCACAAAC
* *
8098725 CATAACAAGTAAAATGTTGTGACACGCCATGCATAACAAGTAAAACGTTGTGACACGGCATGCAT
1 CATAACAAGTAAAATGTTGTGACACGCCATGCACAACAAGTAAAACGTTGTGACACGCCATGCAT
* **
8098790 AACAAGTAAATTGTTCTGACATGCCATG
66 AACAAGTAAATTGTTCTAACACACCATG
* * * *
8098818 CATAACAAGTTAAACGTTGTGATACGCCATGCACAACAAGTTAAACGTTGTGACACGCCATGCAT
1 CATAACAAGTAAAATGTTGTGACACGCCATGCACAACAAGTAAAACGTTGTGACACGCCATGCAT
8098883 AACAAGTAAATTGTTCTAACACACCATG
66 AACAAGTAAATTGTTCTAACACACCATG
*
8098911 CATAACAAGTAAAATGTTGTCACAC
1 CATAACAAGTAAAATGTTGTGACAC
8098936 ATTAATGCTG
Statistics
Matches: 105, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 105 1.00
ACGTcount: A:0.38, C:0.21, G:0.17, T:0.24
Consensus pattern (93 bp):
CATAACAAGTAAAATGTTGTGACACGCCATGCACAACAAGTAAAACGTTGTGACACGCCATGCAT
AACAAGTAAATTGTTCTAACACACCATG
Found at i:8098936 original size:31 final size:31
Alignment explanation
Indices: 8098725--8098935 Score: 278
Period size: 31 Copynumber: 6.8 Consensus size: 31
8098715 TACCACAAAC
8098725 CATAACAAGTAAAATGTTGTGACACGCCATG
1 CATAACAAGTAAAATGTTGTGACACGCCATG
* *
8098756 CATAACAAGTAAAACGTTGTGACACGGCATG
1 CATAACAAGTAAAATGTTGTGACACGCCATG
* * *
8098787 CATAACAAGTAAATTGTTCTGACATGCCATG
1 CATAACAAGTAAAATGTTGTGACACGCCATG
* * *
8098818 CATAACAAGTTAAACGTTGTGATACGCCATG
1 CATAACAAGTAAAATGTTGTGACACGCCATG
* * *
8098849 CACAACAAGTTAAACGTTGTGACACGCCATG
1 CATAACAAGTAAAATGTTGTGACACGCCATG
* * * *
8098880 CATAACAAGTAAATTGTTCTAACACACCATG
1 CATAACAAGTAAAATGTTGTGACACGCCATG
*
8098911 CATAACAAGTAAAATGTTGTCACAC
1 CATAACAAGTAAAATGTTGTGACAC
8098936 ATTAATGCTG
Statistics
Matches: 155, Mismatches: 25, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 155 1.00
ACGTcount: A:0.38, C:0.21, G:0.17, T:0.24
Consensus pattern (31 bp):
CATAACAAGTAAAATGTTGTGACACGCCATG
Found at i:8101160 original size:31 final size:31
Alignment explanation
Indices: 8101120--8101288 Score: 214
Period size: 31 Copynumber: 5.5 Consensus size: 31
8101110 AATAAGGAAT
* * * * *
8101120 AAATATTGTGAAACGCCCTGCATAACAAGTA
1 AAATGTTGTGACACGCCATGCATATCGAGTA
* * *
8101151 AAATGTTGTGACACGTCATGCATAACAAGTA
1 AAATGTTGTGACACGCCATGCATATCGAGTA
*
8101182 AAATGTTTTGACACGCCATGCATATCGAGTCA
1 AAATGTTGTGACACGCCATGCATATCGAGT-A
*
8101214 AAA-GTTGTGACACGCCATGCATATCGAGTC
1 AAATGTTGTGACACGCCATGCATATCGAGTA
*
8101244 AAATGTTGTGACACGCCATGCATATCGAGTC
1 AAATGTTGTGACACGCCATGCATATCGAGTA
*
8101275 AAATGTTGTCACAC
1 AAATGTTGTGACAC
8101289 ATTAACGTTA
Statistics
Matches: 125, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
30 3 0.02
31 118 0.94
32 4 0.03
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.25
Consensus pattern (31 bp):
AAATGTTGTGACACGCCATGCATATCGAGTA
Found at i:8101892 original size:24 final size:24
Alignment explanation
Indices: 8101840--8101962 Score: 103
Period size: 24 Copynumber: 5.2 Consensus size: 24
8101830 CGAGCAATGC
*
8101840 CGTGTCA-CACACTCTAAAC-ATGG
1 CGTGTCACCA-ACTCTAAACTCTGG
*
8101863 CATGTCACCAACTCTAAACTCTGG
1 CGTGTCACCAACTCTAAACTCTGG
* * **
8101887 CTTGTCA-CAGCT-T-CCCTCCATGG
1 CGTGTCACCAACTCTAAACT-C-TGG
*
8101910 CGTGTCACCAACTCTGAACTCTGG
1 CGTGTCACCAACTCTAAACTCTGG
* *
8101934 CGTGTCACCAACTCTAAACTTTGA
1 CGTGTCACCAACTCTAAACTCTGG
8101958 CGTGT
1 CGTGT
8101963 TACAGATTCC
Statistics
Matches: 80, Mismatches: 13, Indels: 13
0.75 0.12 0.12
Matches are distributed among these distances:
21 2 0.03
22 2 0.03
23 28 0.35
24 44 0.55
25 2 0.03
26 2 0.03
ACGTcount: A:0.24, C:0.33, G:0.17, T:0.27
Consensus pattern (24 bp):
CGTGTCACCAACTCTAAACTCTGG
Found at i:8101893 original size:47 final size:48
Alignment explanation
Indices: 8101840--8101952 Score: 126
Period size: 47 Copynumber: 2.4 Consensus size: 48
8101830 CGAGCAATGC
8101840 CGTGTCACAC-ACTCTAAACATGGCATGTCACCAACTCTAAACTCTGG
1 CGTGTCACACAACTCTAAACATGGCATGTCACCAACTCTAAACTCTGG
* ** * * * *
8101887 CTTGTCACAGCTTCCCT--CCATGGCGTGTCACCAACTCTGAACTCTGG
1 CGTGTCACA-CAACTCTAAACATGGCATGTCACCAACTCTAAACTCTGG
8101934 CGTGTCAC-CAACTCTAAAC
1 CGTGTCACACAACTCTAAAC
8101953 TTTGACGTGT
Statistics
Matches: 51, Mismatches: 11, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
45 4 0.08
47 43 0.84
48 1 0.02
49 3 0.06
ACGTcount: A:0.25, C:0.35, G:0.16, T:0.25
Consensus pattern (48 bp):
CGTGTCACACAACTCTAAACATGGCATGTCACCAACTCTAAACTCTGG
Found at i:8101953 original size:71 final size:71
Alignment explanation
Indices: 8101850--8102012 Score: 229
Period size: 71 Copynumber: 2.3 Consensus size: 71
8101840 CGTGTCACAC
* * * * *
8101850 ACTCTAAACA-TGGCATGTCACCAACTCTAAACTCTGGCTTGTCACAGCTTCCCTCCATGGCGTG
1 ACTCTAAACACTGGCGTGTCACCAACTCTAAACTCTGACGTGTCACAGATTCCCTCCATGGCGTC
8101914 TCACCA
66 TCACCA
* * * *
8101920 ACTCTGAACTCTGGCGTGTCACCAACTCTAAACTTTGACGTGTTACAGATTCCCTCCATGGCGTC
1 ACTCTAAACACTGGCGTGTCACCAACTCTAAACTCTGACGTGTCACAGATTCCCTCCATGGCGTC
8101985 TCACCA
66 TCACCA
*
8101991 ACTCTAAACACTGACGTGTCAC
1 ACTCTAAACACTGGCGTGTCAC
8102013 AGATTCCCTC
Statistics
Matches: 80, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
70 8 0.10
71 72 0.90
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (71 bp):
ACTCTAAACACTGGCGTGTCACCAACTCTAAACTCTGACGTGTCACAGATTCCCTCCATGGCGTC
TCACCA
Found at i:8101982 original size:47 final size:47
Alignment explanation
Indices: 8101931--8102060 Score: 170
Period size: 47 Copynumber: 2.8 Consensus size: 47
8101921 CTCTGAACTC
* ** * *
8101931 TGGCGTGTCACCAACTCTAAACTTTGACGTGTTACAGATTCCCTCCA
1 TGGCGTCTCACCAACTCTAAACACTGACGTGTCACAGATTCCCTCAA
8101978 TGGCGTCTCACCAACTCTAAACACTGACGTGTCACAGATTCCCTCAA
1 TGGCGTCTCACCAACTCTAAACACTGACGTGTCACAGATTCCCTCAA
* * * * *
8102025 TGGCGTTTCATCAACTCTGAACGCTGGCGTGTCACA
1 TGGCGTCTCACCAACTCTAAACACTGACGTGTCACA
8102061 ACCGTGGCAC
Statistics
Matches: 73, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 73 1.00
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (47 bp):
TGGCGTCTCACCAACTCTAAACACTGACGTGTCACAGATTCCCTCAA
Found at i:8126580 original size:20 final size:22
Alignment explanation
Indices: 8126534--8126580 Score: 53
Period size: 20 Copynumber: 2.2 Consensus size: 22
8126524 GTATTTAATT
*
8126534 ATTTATATTTTATGCATTATAG
1 ATTTATATTTTATGCATTATAA
* *
8126556 TTTTATA-TTTA-GTATTATAA
1 ATTTATATTTTATGCATTATAA
8126576 ATTTA
1 ATTTA
8126581 AATATAAATA
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
20 11 0.52
21 4 0.19
22 6 0.29
ACGTcount: A:0.34, C:0.02, G:0.06, T:0.57
Consensus pattern (22 bp):
ATTTATATTTTATGCATTATAA
Found at i:8130493 original size:24 final size:24
Alignment explanation
Indices: 8130466--8130512 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
8130456 GATGCAGATG
*
8130466 TAGTCAATGTAGTTAGAGATCCAA
1 TAGTCAATGCAGTTAGAGATCCAA
*
8130490 TAGTCAATGCAGTTGGAGATCCA
1 TAGTCAATGCAGTTAGAGATCCA
8130513 GCAGATGATG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.34, C:0.15, G:0.23, T:0.28
Consensus pattern (24 bp):
TAGTCAATGCAGTTAGAGATCCAA
Found at i:8130499 original size:63 final size:63
Alignment explanation
Indices: 8130394--8130590 Score: 306
Period size: 63 Copynumber: 3.1 Consensus size: 63
8130384 GAATATGCAC
*
8130394 ATGCAGATGCAGTCAATGTAGTTAGAGATCCAGTAGTTAATGCAGTTGGAGATCCAGCGAGCG
1 ATGCAGATGCAGTCAATGTAGTTAGAGATCCAGTAGTCAATGCAGTTGGAGATCCAGCGAGCG
* * *
8130457 ATGCAGATGTAGTCAATGTAGTTAGAGATCCAATAGTCAATGCAGTTGGAGATCCAGC-AGATG
1 ATGCAGATGCAGTCAATGTAGTTAGAGATCCAGTAGTCAATGCAGTTGGAGATCCAGCGAG-CG
* * * *
8130520 ATGCAGATGCAGTCAATGCAGTTGGAGATCCAGCAGTCAATGTAGTTGGAGATCCAGCGAGCG
1 ATGCAGATGCAGTCAATGTAGTTAGAGATCCAGTAGTCAATGCAGTTGGAGATCCAGCGAGCG
8130583 ATGCAGAT
1 ATGCAGAT
8130591 ACAGACACAG
Statistics
Matches: 121, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
62 2 0.02
63 117 0.97
64 2 0.02
ACGTcount: A:0.31, C:0.16, G:0.29, T:0.23
Consensus pattern (63 bp):
ATGCAGATGCAGTCAATGTAGTTAGAGATCCAGTAGTCAATGCAGTTGGAGATCCAGCGAGCG
Found at i:8130555 original size:24 final size:24
Alignment explanation
Indices: 8130528--8130577 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
8130518 TGATGCAGAT
8130528 GCAGTCAATGCAGTTGGAGATCCA
1 GCAGTCAATGCAGTTGGAGATCCA
*
8130552 GCAGTCAATGTAGTTGGAGATCCA
1 GCAGTCAATGCAGTTGGAGATCCA
8130576 GC
1 GC
8130578 GAGCGATGCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (24 bp):
GCAGTCAATGCAGTTGGAGATCCA
Found at i:8132244 original size:26 final size:26
Alignment explanation
Indices: 8132212--8132264 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
8132202 TAACATTCTT
*
8132212 TTGTATCATTTCCATATTATTCTTTG
1 TTGTATCATTTACATATTATTCTTTG
8132238 TTGTATCATTTACATATTATTCTTTG
1 TTGTATCATTTACATATTATTCTTTG
8132264 T
1 T
8132265 ATTCATTCAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.21, C:0.13, G:0.08, T:0.58
Consensus pattern (26 bp):
TTGTATCATTTACATATTATTCTTTG
Found at i:8132264 original size:23 final size:24
Alignment explanation
Indices: 8132206--8132271 Score: 89
Period size: 26 Copynumber: 2.7 Consensus size: 24
8132196 AACATTTAAC
*
8132206 ATTCTTTTGTATCATTTCCATATT
1 ATTCTTTTGTATCATTTACATATT
8132230 ATTCTTTGTTGTATCATTTACATATT
1 ATTC-TT-TTGTATCATTTACATATT
8132256 ATTC-TTTGTATTCATT
1 ATTCTTTTGTA-TCATT
8132272 CATGTGATAA
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
23 5 0.13
24 10 0.26
25 2 0.05
26 21 0.55
ACGTcount: A:0.21, C:0.14, G:0.06, T:0.59
Consensus pattern (24 bp):
ATTCTTTTGTATCATTTACATATT
Found at i:8145646 original size:78 final size:78
Alignment explanation
Indices: 8145551--8145718 Score: 201
Period size: 78 Copynumber: 2.2 Consensus size: 78
8145541 TTTGAGAGAG
* * ** * *
8145551 ACATCTTGTGTTTTAGATTTGTTTGTCCCTTAGTCACCGCACTCAGTTTGCTTCGTTGTACTGGT
1 ACATCTTGTGTTTTAGATATGCTTGTCCCCCAATCACAGCACTCAGTTTGCTTCGTTGTACTGGT
* *
8145616 CATAGCTGCTGCA
66 CACAGCTGCCGCA
* * * * *
8145629 ACATCTTGTGTTTTAGATATGCTTGTCCCCCAATCACAGTAGTCATTTTTCTTCGTTGTTCTGGT
1 ACATCTTGTGTTTTAGATATGCTTGTCCCCCAATCACAGCACTCAGTTTGCTTCGTTGTACTGGT
*
8145694 CACAGTTGCCGCA
66 CACAGCTGCCGCA
*
8145707 ACATCATGTGTT
1 ACATCTTGTGTT
8145719 GCAAATATCA
Statistics
Matches: 75, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
78 75 1.00
ACGTcount: A:0.17, C:0.23, G:0.19, T:0.40
Consensus pattern (78 bp):
ACATCTTGTGTTTTAGATATGCTTGTCCCCCAATCACAGCACTCAGTTTGCTTCGTTGTACTGGT
CACAGCTGCCGCA
Found at i:8149159 original size:118 final size:112
Alignment explanation
Indices: 8149014--8149486 Score: 610
Period size: 118 Copynumber: 4.1 Consensus size: 112
8149004 AAACAAGAGG
* *
8149014 TGAATTGCACAAGTCATGCGCCACCACTCTCGCAATATATAACAACAGGTCACGTAATATATAAA
1 TGAATTGCACAAGTCACGCGCCACCACTCTCGC----T-T-ACAACAGGTCACGCAATATATAAA
* *
8149079 AACCAGTCATGCAAGCCTAAAAAACTACTGAACAAAAGCCTCAAAATAACACA
60 AACCAGTCACGCAAGCCTAAAAAACTACTGAACAAAAGCCTCAAAACAACACA
* * *
8149132 TGAATTGCATAAGTCACGTGCCACCACTCTCGCAATACATAACAACAGGTCACACAATATATAAA
1 TGAATTGCACAAGTCACGCGCCACCACTCTCGC--T---T-ACAACAGGTCACGCAATATATAAA
* * *
8149197 AACCAGTCACGCAAGCTTAAAAAGCTACTGAACAAAAGCCTCAAAATAACACA
60 AACCAGTCACGCAAGCCTAAAAAACTACTGAACAAAAGCCTCAAAACAACACA
* *
8149250 TGAATTGCACAAGTCAAGCGCCACCACTCTCGC-TACAACAGGTAACGCAATATATAAAAACCAG
1 TGAATTGCACAAGTCACGCGCCACCACTCTCGCTTACAACAGGTCACGCAATATATAAAAACCAG
*
8149314 TCACGCAAGCCTAAAAAACTACTGAACAAAAGCTTCAAAACAACACA
66 TCACGCAAGCCTAAAAAACTACTGAACAAAAGCCTCAAAACAACACA
* * * * *
8149361 TGAATTGTACAAGTCACGTGCCACCATTGTCG-TTACAACAGG-CAATGCAATATATAAAAACCA
1 TGAATTGCACAAGTCACGCGCCACCACTCTCGCTTACAACAGGTC-ACGCAATATATAAAAACCA
* *
8149424 GTCACGCACTGCCTAAAAAACTACTGAACAAAAGCCTCAAAACAACGCA
65 GTCACGCA-AGCCTAAAAAACTACTGAACAAAAGCCTCAAAACAACACA
*
8149473 TGAATTACACAAGT
1 TGAATTGCACAAGT
8149487 TAGGCACGCA
Statistics
Matches: 320, Mismatches: 30, Indels: 16
0.87 0.08 0.04
Matches are distributed among these distances:
111 133 0.42
112 50 0.16
116 2 0.01
118 135 0.42
ACGTcount: A:0.43, C:0.26, G:0.13, T:0.18
Consensus pattern (112 bp):
TGAATTGCACAAGTCACGCGCCACCACTCTCGCTTACAACAGGTCACGCAATATATAAAAACCAG
TCACGCAAGCCTAAAAAACTACTGAACAAAAGCCTCAAAACAACACA
Found at i:8149352 original size:111 final size:113
Alignment explanation
Indices: 8149014--8149486 Score: 603
Period size: 111 Copynumber: 4.1 Consensus size: 113
8149004 AAACAAGAGG
* * *
8149014 TGAATTGCACAAGTCATGCGCCACCACTCTCGCAATATATAACAACAGGTCACGTAATATATAAA
1 TGAATTGCACAAGTCACGCGCCACCACTCTCGC-----ATAACAACAGGTAACGCAATATATAAA
* *
8149079 AACCAGTCATGCAAGCCTAAAAAACTACTGAACAAAAGCCTCAAAATAACACA
61 AACCAGTCACGCAAGCCTAAAAAACTACTGAACAAAAGCCTCAAAACAACACA
* * * *
8149132 TGAATTGCATAAGTCACGTGCCACCACTCTCGCAATACATAACAACAGGTCACACAATATATAAA
1 TGAATTGCACAAGTCACGCGCCACCACTCTCG-----CATAACAACAGGTAACGCAATATATAAA
* * *
8149197 AACCAGTCACGCAAGCTTAAAAAGCTACTGAACAAAAGCCTCAAAATAACACA
61 AACCAGTCACGCAAGCCTAAAAAACTACTGAACAAAAGCCTCAAAACAACACA
*
8149250 TGAATTGCACAAGTCAAGCGCCACCACTCTCGC-T-ACAACAGGTAACGCAATATATAAAAACCA
1 TGAATTGCACAAGTCACGCGCCACCACTCTCGCATAACAACAGGTAACGCAATATATAAAAACCA
*
8149313 GTCACGCAAGCCTAAAAAACTACTGAACAAAAGCTTCAAAACAACACA
66 GTCACGCAAGCCTAAAAAACTACTGAACAAAAGCCTCAAAACAACACA
* * * * * * *
8149361 TGAATTGTACAAGTCACGTGCCACCATTGTCG--TTACAACAGGCAATGCAATATATAAAAACCA
1 TGAATTGCACAAGTCACGCGCCACCACTCTCGCATAACAACAGGTAACGCAATATATAAAAACCA
* *
8149424 GTCACGCACTGCCTAAAAAACTACTGAACAAAAGCCTCAAAACAACGCA
66 GTCACGCA-AGCCTAAAAAACTACTGAACAAAAGCCTCAAAACAACACA
*
8149473 TGAATTACACAAGT
1 TGAATTGCACAAGT
8149487 TAGGCACGCA
Statistics
Matches: 319, Mismatches: 29, Indels: 20
0.87 0.08 0.05
Matches are distributed among these distances:
110 1 0.00
111 133 0.42
112 50 0.16
113 1 0.00
118 133 0.42
123 1 0.00
ACGTcount: A:0.43, C:0.26, G:0.13, T:0.18
Consensus pattern (113 bp):
TGAATTGCACAAGTCACGCGCCACCACTCTCGCATAACAACAGGTAACGCAATATATAAAAACCA
GTCACGCAAGCCTAAAAAACTACTGAACAAAAGCCTCAAAACAACACA
Found at i:8150908 original size:40 final size:40
Alignment explanation
Indices: 8150853--8151050 Score: 146
Period size: 40 Copynumber: 5.0 Consensus size: 40
8150843 CTATAAACAG
* *
8150853 GTCACGCAATGCTCAACAAATATTCAGTCACGTTATGCCT
1 GTCACGCAACGCTCAACAAATATTCAGTCACGTAATGCCT
*
8150893 GTCACGCAACGCTCAACAAATATTTAGTCACGTAATGCCTATAAT
1 GTCACGCAACGCTCAACAAATATTCAGTCACGTAATGCC-----T
* ** *
8150938 GAACTCACACAATTCTCAACAAATATTCAGTCACGTAAT--AT
1 G---TCACGCAACGCTCAACAAATATTCAGTCACGTAATGCCT
* * * *
8150979 -TCAAGC-AC-CT-----AATATTTAGTCACGTATTGCTT
1 GTCACGCAACGCTCAACAAATATTCAGTCACGTAATGCCT
*
8151011 GTCACGCAACGCTCAACAAATATTCAGTAACGTAATGCCT
1 GTCACGCAACGCTCAACAAATATTCAGTCACGTAATGCCT
8151051 ATAAAGAACT
Statistics
Matches: 121, Mismatches: 19, Indels: 36
0.69 0.11 0.20
Matches are distributed among these distances:
30 16 0.13
32 1 0.01
33 5 0.04
34 2 0.02
35 4 0.03
36 1 0.01
37 4 0.03
40 54 0.45
41 1 0.01
45 2 0.02
48 31 0.26
ACGTcount: A:0.34, C:0.25, G:0.13, T:0.28
Consensus pattern (40 bp):
GTCACGCAACGCTCAACAAATATTCAGTCACGTAATGCCT
Found at i:8150979 original size:15 final size:15
Alignment explanation
Indices: 8150959--8151004 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
8150949 ATTCTCAACA
8150959 AATATTCAGTCACGT
1 AATATTCAGTCACGT
*
8150974 AATATTCAAG-CACCT
1 AATATTC-AGTCACGT
*
8150989 AATATTTAGTCACGT
1 AATATTCAGTCACGT
8151004 A
1 A
8151005 TTGCTTGTCA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
14 2 0.08
15 22 0.85
16 2 0.08
ACGTcount: A:0.37, C:0.20, G:0.11, T:0.33
Consensus pattern (15 bp):
AATATTCAGTCACGT
Found at i:8151086 original size:118 final size:118
Alignment explanation
Indices: 8150871--8151109 Score: 363
Period size: 118 Copynumber: 2.0 Consensus size: 118
8150861 ATGCTCAACA
* *
8150871 AATATTCAGTCACGTTATGCCTGTCACGCAACGCTCAACAAATATTTAGTCACGTAATGCCTATA
1 AATATTCAGTCACGTTATGCCTGTCACGCAACGCTCAACAAATATTCAGTAACGTAATGCCTATA
* * * *
8150936 ATGAACTCACACAATTCTCAACAAATATTCAGTCACGTAATATTCAAGCACCT
66 AAGAACTCACACAATGCTCAACAAACAATCAGTCACGTAATATTCAAGCACCT
* *
8150989 AATATTTAGTCACG-TATTGCTTGTCACGCAACGCTCAACAAATATTCAGTAACGTAATGCCTAT
1 AATATTCAGTCACGTTA-TGCCTGTCACGCAACGCTCAACAAATATTCAGTAACGTAATGCCTAT
** *
8151053 AAAGAACTCATGCAATGCTCAACAAACAATCAGTCACGTAATATTCAGGCACCT
65 AAAGAACTCACACAATGCTCAACAAACAATCAGTCACGTAATATTCAAGCACCT
8151107 AAT
1 AAT
8151110 GCCAAATAAA
Statistics
Matches: 109, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
117 2 0.02
118 107 0.98
ACGTcount: A:0.36, C:0.24, G:0.12, T:0.27
Consensus pattern (118 bp):
AATATTCAGTCACGTTATGCCTGTCACGCAACGCTCAACAAATATTCAGTAACGTAATGCCTATA
AAGAACTCACACAATGCTCAACAAACAATCAGTCACGTAATATTCAAGCACCT
Found at i:8161637 original size:478 final size:478
Alignment explanation
Indices: 8160740--8161693 Score: 1658
Period size: 478 Copynumber: 2.0 Consensus size: 478
8160730 ATAGACTATA
* * *
8160740 ATGAAACCTTTGCACCGGTTGCTAGGATAGAAGTTATAAGATTGTTGCTTGCTTTTGCATGTTTT
1 ATGAAACCTTTACACCGGTTGCTAGGATAGAAGCTATAAGATTGTTGCTTACTTTTGCATGTTTT
*
8160805 ATGAATTTTAAATTATTTTAAATGGATGTAAAAAGTGCATTCTTAAATGGATTCATTCAAAAGGA
66 ATGAATTTTAAATTATTTCAAATGGATGTAAAAAGTGCATTCTTAAATGGATTCATTCAAAAGGA
* *
8160870 AGCATATGTTGAAGAACCACCAGGTTTTGAGGACTTTGAAAAACCAGATCATGTTTTCAAACTTC
131 AGCATATGTTGAACAACCACCAGGTTTTGAAGACTTTGAAAAACCAGATCATGTTTTCAAACTTC
* * *
8160935 ATAAAGCCTTGTGTGGATTGCAACAAGCTCTTAGAGCTTGGTATGAGAGGCTTTCAAAATTTCTA
196 ATAAAGCCTTGTATGGATTGAAACAAGCTCCTAGAGCTTGGTATGAGAGGCTTTCAAAATTTCTA
*
8161000 GTTAAAAAAGGTTATGCTAGAGGTAGTATTAACACAACATTGTTTATCAAAAAATACTTAAATGA
261 GATAAAAAAGGTTATGCTAGAGGTAGTATTAACACAACATTGTTTATCAAAAAATACTTAAATGA
*
8161065 TTTAATTGTAGTTCAAATTTATGTGGATAACATTGTATTTGGTGCAACTAATGAGGCTTTATGCA
326 TTTAATTATAGTTCAAATTTATGTGGATAACATTGTATTTGGTGCAACTAATGAGGCTTTATGCA
* * * * *
8161130 AGAATTTTGCTAAAGAAATGCAGGGTGAATTTGTGATGAGCATGATGGGTGAGTTGAAATACTTT
391 AGAATTTTGCTAAAAAAATGCAAGGTGAATTTGAGATGAGCAGGATGGGTGAGCTGAAATACTTT
8161195 CTTGGGCTTCAAATCAAACAATG
456 CTTGGGCTTCAAATCAAACAATG
* *
8161218 ATGAAACCTTTACACCGGTTGCTAGGATAGAAGCTATAAGATTTTTGGTTACTTTTGCATGTTTT
1 ATGAAACCTTTACACCGGTTGCTAGGATAGAAGCTATAAGATTGTTGCTTACTTTTGCATGTTTT
8161283 ATGAATTTTAAATTATTTCAAATGGATGTAAAAAGTGCATTCTTAAATGGATTCATTCAAGAA-G
66 ATGAATTTTAAATTATTTCAAATGGATGTAAAAAGTGCATTCTTAAATGGATTCATTCAA-AAGG
* * *
8161347 AAGTATATGTTGAACAACCACCAGGTTTTGAAGATTTTGAAAAACCATATCATGTTTTCAAACTT
130 AAGCATATGTTGAACAACCACCAGGTTTTGAAGACTTTGAAAAACCAGATCATGTTTTCAAACTT
*
8161412 CATAAAGCCTTGTATGGATTGAAACAAGCTCCTAGAGCTTGGTATGAGAGGCTTTCAAAATTTTT
195 CATAAAGCCTTGTATGGATTGAAACAAGCTCCTAGAGCTTGGTATGAGAGGCTTTCAAAATTTCT
*
8161477 AGATAAAAAAGGTTATGCTAGAGGTAGTATTAACACAACATTGTTTATCAAAAGATACTTAAATG
260 AGATAAAAAAGGTTATGCTAGAGGTAGTATTAACACAACATTGTTTATCAAAAAATACTTAAATG
* *
8161542 ATTTAATTATAGTTCAAATTTATGTGGATGACATTGTATTTGGTGCAACTAATGAGGCTTTGTGC
325 ATTTAATTATAGTTCAAATTTATGTGGATAACATTGTATTTGGTGCAACTAATGAGGCTTTATGC
*
8161607 AAGAATTTTGCTAAAAAAATGCAAGGTGAATTTGAGATGAGTAGGATGGGTGAGCTGAAATACTT
390 AAGAATTTTGCTAAAAAAATGCAAGGTGAATTTGAGATGAGCAGGATGGGTGAGCTGAAATACTT
8161672 TCTTGGGCTTCAAATCAAACAA
455 TCTTGGGCTTCAAATCAAACAA
8161694 AGTGAGAAAG
Statistics
Matches: 449, Mismatches: 26, Indels: 2
0.94 0.05 0.00
Matches are distributed among these distances:
478 447 1.00
479 2 0.00
ACGTcount: A:0.34, C:0.12, G:0.20, T:0.34
Consensus pattern (478 bp):
ATGAAACCTTTACACCGGTTGCTAGGATAGAAGCTATAAGATTGTTGCTTACTTTTGCATGTTTT
ATGAATTTTAAATTATTTCAAATGGATGTAAAAAGTGCATTCTTAAATGGATTCATTCAAAAGGA
AGCATATGTTGAACAACCACCAGGTTTTGAAGACTTTGAAAAACCAGATCATGTTTTCAAACTTC
ATAAAGCCTTGTATGGATTGAAACAAGCTCCTAGAGCTTGGTATGAGAGGCTTTCAAAATTTCTA
GATAAAAAAGGTTATGCTAGAGGTAGTATTAACACAACATTGTTTATCAAAAAATACTTAAATGA
TTTAATTATAGTTCAAATTTATGTGGATAACATTGTATTTGGTGCAACTAATGAGGCTTTATGCA
AGAATTTTGCTAAAAAAATGCAAGGTGAATTTGAGATGAGCAGGATGGGTGAGCTGAAATACTTT
CTTGGGCTTCAAATCAAACAATG
Found at i:8162567 original size:21 final size:21
Alignment explanation
Indices: 8162543--8162584 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
8162533 AAATGACAAT
* *
8162543 AGGCATTTAGTCGACTAAGAG
1 AGGCACTTAGTCAACTAAGAG
8162564 AGGCACTTAGTCAACTAAGAG
1 AGGCACTTAGTCAACTAAGAG
8162585 CATTCTGTCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.36, C:0.17, G:0.26, T:0.21
Consensus pattern (21 bp):
AGGCACTTAGTCAACTAAGAG
Found at i:8167188 original size:10 final size:10
Alignment explanation
Indices: 8167160--8167188 Score: 51
Period size: 9 Copynumber: 3.0 Consensus size: 10
8167150 TAAATCCATT
8167160 TTTCATAAAA
1 TTTCATAAAA
8167170 TTT-ATAAAA
1 TTTCATAAAA
8167179 TTTCATAAAA
1 TTTCATAAAA
8167189 ACTACCTTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.50
10 9 0.50
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (10 bp):
TTTCATAAAA
Found at i:8169690 original size:59 final size:60
Alignment explanation
Indices: 8169572--8169695 Score: 164
Period size: 59 Copynumber: 2.1 Consensus size: 60
8169562 AAAATCTTTA
* * * *
8169572 AGCATTTTGAGCATTTTGGAGTGGTTTTTGATATACAATGGAAAACCTTTGAGCGTTTCG
1 AGCATGTTAAGCATTTTGGAGTGGTTTTTGATATACAATGAAAAACCTTTGAGCATTTCG
*
8169632 AGCATGTTAAGCATTTTGGAGTGG-TTTTGATGCAT-GAA-GAAAAACCTTTGAGCATTTCG
1 AGCATGTTAAGCATTTTGGAGTGGTTTTTGAT--ATACAATGAAAAACCTTTGAGCATTTCG
8169691 AGCAT
1 AGCAT
8169696 TCTTCGCCAA
Statistics
Matches: 57, Mismatches: 5, Indels: 5
0.85 0.07 0.07
Matches are distributed among these distances:
59 31 0.54
60 24 0.42
61 2 0.04
ACGTcount: A:0.27, C:0.12, G:0.25, T:0.35
Consensus pattern (60 bp):
AGCATGTTAAGCATTTTGGAGTGGTTTTTGATATACAATGAAAAACCTTTGAGCATTTCG
Found at i:8169914 original size:22 final size:21
Alignment explanation
Indices: 8169869--8169943 Score: 78
Period size: 22 Copynumber: 3.4 Consensus size: 21
8169859 GACTTAGGAT
* * *
8169869 TGCCTAAAAATCAGTCACGTAA
1 TGCCTAAAACT-AGTCATGCAA
*
8169891 TGCCTACAACTTAGTCATGCAA
1 TGCCTAAAAC-TAGTCATGCAA
*
8169913 TGTCTAAAAACTAGTCATGCAA
1 TGCCT-AAAACTAGTCATGCAA
8169935 TGCCTAAAA
1 TGCCTAAAA
8169944 TTTAAAAATG
Statistics
Matches: 44, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
21 4 0.09
22 35 0.80
23 5 0.11
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.25
Consensus pattern (21 bp):
TGCCTAAAACTAGTCATGCAA
Found at i:8175206 original size:38 final size:39
Alignment explanation
Indices: 8175162--8175269 Score: 130
Period size: 38 Copynumber: 2.7 Consensus size: 39
8175152 AAAGTGCCTG
* *
8175162 TGTGCACGATGTGAGGGGATGCACACGATGGCACTA-AT-
1 TGTGCACGATGTG-GGGGATACACACGATGACACTAGATA
* *
8175200 TGTGCACGATGTGGGGAGATACACACGATGACCCTAGCTA
1 TGTGCACGATGTGGGG-GATACACACGATGACACTAGATA
*
8175240 TGTGCACTATGTGGGGGGATACACACGATG
1 TGTGCACGATGT-GGGGGATACACACGATG
8175270 TGGGGGGATG
Statistics
Matches: 61, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
37 3 0.05
38 29 0.48
39 1 0.02
40 24 0.39
41 4 0.07
ACGTcount: A:0.26, C:0.19, G:0.33, T:0.21
Consensus pattern (39 bp):
TGTGCACGATGTGGGGGATACACACGATGACACTAGATA
Found at i:8180987 original size:49 final size:49
Alignment explanation
Indices: 8180931--8181030 Score: 200
Period size: 49 Copynumber: 2.0 Consensus size: 49
8180921 ACAGGAGGGG
8180931 AAGAGAAAAAGTTGACTTTTTGGTCTCAATCATTGAATTTATTGATAAT
1 AAGAGAAAAAGTTGACTTTTTGGTCTCAATCATTGAATTTATTGATAAT
8180980 AAGAGAAAAAGTTGACTTTTTGGTCTCAATCATTGAATTTATTGATAAT
1 AAGAGAAAAAGTTGACTTTTTGGTCTCAATCATTGAATTTATTGATAAT
8181029 AA
1 AA
8181031 TATGATCACG
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 51 1.00
ACGTcount: A:0.38, C:0.08, G:0.16, T:0.38
Consensus pattern (49 bp):
AAGAGAAAAAGTTGACTTTTTGGTCTCAATCATTGAATTTATTGATAAT
Found at i:8185430 original size:28 final size:28
Alignment explanation
Indices: 8185390--8185443 Score: 65
Period size: 28 Copynumber: 1.9 Consensus size: 28
8185380 AATATCTATA
8185390 AATTTTGCAAAA-TATAAAAATATTTTTT
1 AATTTTGCAAAATTATAAAAA-ATTTTTT
* * *
8185418 AATTTTTCGAAATTCTAAAAAATTTT
1 AATTTTGCAAAATTATAAAAAATTTT
8185444 AGAAAAACTA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
28 15 0.68
29 7 0.32
ACGTcount: A:0.44, C:0.06, G:0.04, T:0.46
Consensus pattern (28 bp):
AATTTTGCAAAATTATAAAAAATTTTTT
Found at i:8185798 original size:118 final size:118
Alignment explanation
Indices: 8185640--8185860 Score: 410
Period size: 118 Copynumber: 1.9 Consensus size: 118
8185630 ATTTCATCTC
8185640 TATAATTTTTAATAAACTTTTAAAATAAAAGATATTTCTTTTTTACTTTCAATTTTTTTTTTAAA
1 TATAATTTTTAATAAACTTTTAAAATAAAAGATATTTCTTTTTTACTTTCAATTTTTTTTTTAAA
8185705 AAAAAATCTCTTTTGGTTTTTTATTTTTTTTTCTAAAAAAATATTATAATNGTT
66 AAAAAATCTCTTTTGGTTTTTTATTTTTTTTTCTAAAAAAATATTATAAT-GTT
8185759 TATAATTTTTTAA-AAA-TTTTAAAATAAAAGATATTTCTTTTTTACTTTCAATTTTTTTTTTAA
1 TATAA-TTTTTAATAAACTTTTAAAATAAAAGATATTTCTTTTTTACTTTCAATTTTTTTTTTAA
8185822 AAAAAAATCTCTTTTGGTTTTTTATTTTTTTTTCTAAAA
65 AAAAAAATCTCTTTTGGTTTTTTATTTTTTTTTCTAAAA
8185861 GAATTATTTC
Statistics
Matches: 101, Mismatches: 0, Indels: 3
0.97 0.00 0.03
Matches are distributed among these distances:
118 86 0.85
119 8 0.08
120 7 0.07
ACGTcount: A:0.35, C:0.06, G:0.03, T:0.56
Consensus pattern (118 bp):
TATAATTTTTAATAAACTTTTAAAATAAAAGATATTTCTTTTTTACTTTCAATTTTTTTTTTAAA
AAAAAATCTCTTTTGGTTTTTTATTTTTTTTTCTAAAAAAATATTATAATGTT
Found at i:8185930 original size:118 final size:116
Alignment explanation
Indices: 8185640--8185931 Score: 281
Period size: 118 Copynumber: 2.5 Consensus size: 116
8185630 ATTTCATCTC
* ** * * *
8185640 TATAAT-TTTTAATAAACTTTTAAAATAAAAGATATTTCTTTTTTACTTTCAATTTTTTTTTTAA
1 TATAATGTTTTAA-AAA-TTTCAAAATAAAAGATATAACTATATTA-TTTAAATTTTTTTTTTAA
8185704 AAAAAAATCTCTTTTGGTTTTTTATTTTTTTTTCTAAAAAAATATTATAATNGTT
63 AAAAAAATCTCTTTTGGTTTTTTATTTTTTTTTCTAAAAAAATATTATAAT-GTT
* * ** * * *
8185759 TATAATTTTTTAAAAATTTTAAAATAAAAGATATTTCTTTTTTACTTTCAATTTTTTTTTTAAAA
1 TATAATGTTTTAAAAATTTCAAAATAAAAGATATAACTATATTA-TTTAAATTTTTTTTTTAAAA
* *
8185824 AAAAATCTCTTTTGGTTTTTTATTTTTTTTTCTAAAAGAATTATT-TCCAT-TT
65 AAAAATCTCTTTTGGTTTTTTATTTTTTTTTCTAAAA-AAATATTAT-AATGTT
* *
8185876 T-TAATGTTTTAAGAATATTTCAAACTAACA-ATAATAACAATATATT-TTTAAATTTT
1 TATAATGTTTTAA-AA-ATTTCAAAATAAAAGAT-ATAAC--TATATTATTTAAATTTT
8185932 CAAAGTTGCT
Statistics
Matches: 154, Mismatches: 11, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
116 10 0.06
117 7 0.05
118 110 0.71
119 17 0.11
120 10 0.06
ACGTcount: A:0.36, C:0.07, G:0.03, T:0.53
Consensus pattern (116 bp):
TATAATGTTTTAAAAATTTCAAAATAAAAGATATAACTATATTATTTAAATTTTTTTTTTAAAAA
AAAATCTCTTTTGGTTTTTTATTTTTTTTTCTAAAAAAATATTATAATGTT
Found at i:8186736 original size:10 final size:10
Alignment explanation
Indices: 8186721--8186760 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
8186711 ATTTTAGTCA
*
8186721 TCTCTCTGTT
1 TCTCTCTATT
*
8186731 TCTCTCTTTT
1 TCTCTCTATT
8186741 TCTCTCTAATT
1 TCTCTCT-ATT
8186752 TCTCTCTAT
1 TCTCTCTAT
8186761 ACATATTTGT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
10 18 0.67
11 9 0.33
ACGTcount: A:0.07, C:0.30, G:0.03, T:0.60
Consensus pattern (10 bp):
TCTCTCTATT
Done.