Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19593398
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 1222752 characters in sequence are not A, C, G, or T
File 20 of 50
Found at i:9372230 original size:15 final size:15
Alignment explanation
Indices: 9372175--9372230 Score: 53
Period size: 15 Copynumber: 3.7 Consensus size: 15
9372165 ACTTTGAAGC
*
9372175 AAAGAGAGAAAAGAAG
1 AAAGA-AGAAAAGGAG
9372191 AAAGAAG-AAAGGAG
1 AAAGAAGAAAAGGAG
*
9372205 AAAG-GGAAAAAGGAG
1 AAAGAAG-AAAAGGAG
*
9372220 GAAGAAGAAAA
1 AAAGAAGAAAA
9372231 AAGAAAGGAA
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
13 1 0.03
14 10 0.30
15 16 0.48
16 6 0.18
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (15 bp):
AAAGAAGAAAAGGAG
Found at i:9375679 original size:43 final size:43
Alignment explanation
Indices: 9375626--9375778 Score: 216
Period size: 43 Copynumber: 3.6 Consensus size: 43
9375616 TTCCCAGCTC
* * ** *
9375626 ATGCACACTCCCTACTCACACATGGCTAGGTCATCACCGGGTT
1 ATGCGCACTCCCTACTCGCACATAACCAGGTCATCACCGGGTT
* *
9375669 ATGCGCACTCCCTACTTGCACATAACCGGGTCATCACCGGGTT
1 ATGCGCACTCCCTACTCGCACATAACCAGGTCATCACCGGGTT
* * *
9375712 ATGTGCACTCCCTACTCGCACATAACCAGGTCATCATCGGCTT
1 ATGCGCACTCCCTACTCGCACATAACCAGGTCATCACCGGGTT
9375755 ATGCGCACTCCCTACTCGCACATA
1 ATGCGCACTCCCTACTCGCACATA
9375779 GTCGAGTCAA
Statistics
Matches: 97, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 97 1.00
ACGTcount: A:0.23, C:0.36, G:0.18, T:0.24
Consensus pattern (43 bp):
ATGCGCACTCCCTACTCGCACATAACCAGGTCATCACCGGGTT
Found at i:9384516 original size:24 final size:24
Alignment explanation
Indices: 9384483--9384534 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
9384473 CATTGTAAGA
* *
9384483 ATGTGGTGGATGATAAGCCCACGC
1 ATGTGATGGATGATAAACCCACGC
9384507 ATGTGATGGATGATAAACCCACGC
1 ATGTGATGGATGATAAACCCACGC
9384531 ATGT
1 ATGT
9384535 TGATAAGGCT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (24 bp):
ATGTGATGGATGATAAACCCACGC
Found at i:9396461 original size:19 final size:19
Alignment explanation
Indices: 9396419--9396462 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
9396409 AGGAGGAAGA
* *
9396419 AGAAGAAGCTGTTGGAAAT
1 AGAAGAAGCTGCTGGAAAG
*
9396438 TGAAGAAGCTGCTGGAAAG
1 AGAAGAAGCTGCTGGAAAG
9396457 AGAAGA
1 AGAAGA
9396463 TATTTATAGC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.43, C:0.07, G:0.34, T:0.16
Consensus pattern (19 bp):
AGAAGAAGCTGCTGGAAAG
Found at i:9398765 original size:68 final size:68
Alignment explanation
Indices: 9398657--9398827 Score: 189
Period size: 68 Copynumber: 2.5 Consensus size: 68
9398647 CATATCATAT
* ** * ** * * *
9398657 GGTATGTGGAAAGTACGTCACATACATAGCATCATAGCATTAAACATGTACTCATTCTCATGTCA
1 GGTATGTGGAAATTATATCACATACTTAATAACATAGCATTAAACATGTACACAATCTCATGTCA
*
9398722 CCG
66 CAG
* * * * *
9398725 GGTATGTGGGATTTATATCATATACTTAATAACATAGCATTCAACATGTACACAATCTCATGTTA
1 GGTATGTGGAAATTATATCACATACTTAATAACATAGCATTAAACATGTACACAATCTCATGTCA
*
9398790 CAT
66 CAG
*
9398793 GGTATGTGGAAATTATATCACATACTTAGTAACAT
1 GGTATGTGGAAATTATATCACATACTTAATAACAT
9398828 GTTTTACATC
Statistics
Matches: 83, Mismatches: 20, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
68 83 1.00
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.32
Consensus pattern (68 bp):
GGTATGTGGAAATTATATCACATACTTAATAACATAGCATTAAACATGTACACAATCTCATGTCA
CAG
Found at i:9403191 original size:32 final size:33
Alignment explanation
Indices: 9403145--9403218 Score: 125
Period size: 32 Copynumber: 2.3 Consensus size: 33
9403135 GCATTCTTCT
*
9403145 GCACTTCA-TGCCTATCCTTGTAGAAGATTCAA
1 GCACTTCACTGCCTATCCTTGTAAAAGATTCAA
9403177 GCACTTCACT-CCTATCCTTGTAAAAGATTCAA
1 GCACTTCACTGCCTATCCTTGTAAAAGATTCAA
9403209 GCACTTCACT
1 GCACTTCACT
9403219 TTGTACCACT
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
32 39 0.98
33 1 0.03
ACGTcount: A:0.28, C:0.28, G:0.12, T:0.31
Consensus pattern (33 bp):
GCACTTCACTGCCTATCCTTGTAAAAGATTCAA
Found at i:9404317 original size:30 final size:30
Alignment explanation
Indices: 9404281--9404343 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
9404271 AAGCAACATG
9404281 GAAAATAGAGACAAGGAACCAAGTGAAGAT
1 GAAAATAGAGACAAGGAACCAAGTGAAGAT
*
9404311 GAAAATAGAGACAAGGAATCAAGTGAAGAT
1 GAAAATAGAGACAAGGAACCAAGTGAAGAT
9404341 GAA
1 GAA
9404344 TTCTCAAATC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.54, C:0.08, G:0.27, T:0.11
Consensus pattern (30 bp):
GAAAATAGAGACAAGGAACCAAGTGAAGAT
Found at i:9408337 original size:63 final size:63
Alignment explanation
Indices: 9408188--9408342 Score: 222
Period size: 63 Copynumber: 2.5 Consensus size: 63
9408178 TACAGGTATG
* * *
9408188 TGCACTACCCACTCCGCACATGCACAGTTGTAAGTGTCACAACATCGTCATTCGACCAGCATA
1 TGCACTGCCCACTCCGCACATGCACGGTTGTAAGTGTCACAACATCGTCATTCAACCAGCATA
* * * * *
9408251 TGCATTGCCCACTCTGTATATGCACGGTTGT-AGTTGTCACAACATCGTCATTCAACCGGCATA
1 TGCACTGCCCACTCCGCACATGCACGGTTGTAAG-TGTCACAACATCGTCATTCAACCAGCATA
9408314 TGCACTGCCCACTCCGCACATGCACGGTT
1 TGCACTGCCCACTCCGCACATGCACGGTT
9408343 ACATCAATTA
Statistics
Matches: 79, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
62 2 0.03
63 77 0.97
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.25
Consensus pattern (63 bp):
TGCACTGCCCACTCCGCACATGCACGGTTGTAAGTGTCACAACATCGTCATTCAACCAGCATA
Found at i:9412395 original size:20 final size:21
Alignment explanation
Indices: 9412350--9412396 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
9412340 AGATGTCTAA
*
9412350 AATAATTATTTGAAATGAAAT
1 AATAATTATTTGAAATAAAAT
* *
9412371 TATAATTGTTTG-AATAAAAT
1 AATAATTATTTGAAATAAAAT
9412391 AATAAT
1 AATAAT
9412397 ATTCAATAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
20 12 0.55
21 10 0.45
ACGTcount: A:0.51, C:0.00, G:0.09, T:0.40
Consensus pattern (21 bp):
AATAATTATTTGAAATAAAAT
Found at i:9414415 original size:19 final size:19
Alignment explanation
Indices: 9414391--9414428 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
9414381 ACTTTTTAAC
9414391 CTCAAATCATACTCCAATA
1 CTCAAATCATACTCCAATA
9414410 CTCAAATCATACTCCAATA
1 CTCAAATCATACTCCAATA
9414429 AGTCAAATGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.32, G:0.00, T:0.26
Consensus pattern (19 bp):
CTCAAATCATACTCCAATA
Found at i:9417653 original size:2 final size:2
Alignment explanation
Indices: 9417646--9417678 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
9417636 TATTCGCATG
9417646 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
9417679 TACCCCAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:9418732 original size:63 final size:63
Alignment explanation
Indices: 9418641--9418863 Score: 322
Period size: 63 Copynumber: 3.5 Consensus size: 63
9418631 ATCATTACCA
* * * * *
9418641 GCATGTGCACTACCCACTCCGCACATGCACGGTTGTAAG-TGTCACAACATCGTCATTCAACTG
1 GCATATGCACTGCCCACTCCGCACATGCACGGTTGT-AGTTGTCAGAACATCATCATTCAACCG
** * *
9418704 GCATATGCACTGCCCACTATGCATATGCACAGTTGTAGTTGTCAGAACATCATCATTCAACCG
1 GCATATGCACTGCCCACTCCGCACATGCACGGTTGTAGTTGTCAGAACATCATCATTCAACCG
* *
9418767 GCATATGCACTGCCCACTCCGCATATGCATGGTTGTAGTTGTCAGAACATCATCATTCAACCG
1 GCATATGCACTGCCCACTCCGCACATGCACGGTTGTAGTTGTCAGAACATCATCATTCAACCG
*
9418830 ACATATGCACTGCCCACTCCGCACATGCACGGTT
1 GCATATGCACTGCCCACTCCGCACATGCACGGTT
9418864 ACATCAATTA
Statistics
Matches: 143, Mismatches: 16, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
62 2 0.01
63 141 0.99
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.25
Consensus pattern (63 bp):
GCATATGCACTGCCCACTCCGCACATGCACGGTTGTAGTTGTCAGAACATCATCATTCAACCG
Found at i:9424243 original size:35 final size:35
Alignment explanation
Indices: 9424199--9424336 Score: 147
Period size: 35 Copynumber: 4.0 Consensus size: 35
9424189 GTTAGTTTTG
* * *
9424199 GGTTTTGGTTGATCCCGTGAAAAACCATTGTTAAA
1 GGTTGTGGTTGAGCCTGTGAAAAACCATTGTTAAA
* *
9424234 GGTTGTGGTTGAGCCTTTGAAAAGCCATT-TT--A
1 GGTTGTGGTTGAGCCTGTGAAAAACCATTGTTAAA
* * * *
9424266 GGTTTTTGTTGATCCTGTGAAAAACCATTATTAAA
1 GGTTGTGGTTGAGCCTGTGAAAAACCATTGTTAAA
* * *
9424301 GGTTGTGGCTGAGCCTGTGAAAAGCCATTGTAAAA
1 GGTTGTGGTTGAGCCTGTGAAAAACCATTGTTAAA
9424336 G
1 G
9424337 CTTGGTGGAA
Statistics
Matches: 83, Mismatches: 17, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
32 25 0.30
33 2 0.02
34 2 0.02
35 54 0.65
ACGTcount: A:0.28, C:0.13, G:0.25, T:0.34
Consensus pattern (35 bp):
GGTTGTGGTTGAGCCTGTGAAAAACCATTGTTAAA
Found at i:9424289 original size:67 final size:67
Alignment explanation
Indices: 9424194--9424329 Score: 218
Period size: 67 Copynumber: 2.0 Consensus size: 67
9424184 GAAAAGTTAG
* * * *
9424194 TTTTGGGTTTTGGTTGATCCCGTGAAAAACCATTGTTAAAGGTTGTGGTTGAGCCTTTGAAAAGC
1 TTTTAGGTTTTGGTTGATCCCGTGAAAAACCATTATTAAAGGTTGTGGCTGAGCCTGTGAAAAGC
9424259 CA
66 CA
* *
9424261 TTTTAGGTTTTTGTTGATCCTGTGAAAAACCATTATTAAAGGTTGTGGCTGAGCCTGTGAAAAGC
1 TTTTAGGTTTTGGTTGATCCCGTGAAAAACCATTATTAAAGGTTGTGGCTGAGCCTGTGAAAAGC
9424326 CA
66 CA
9424328 TT
1 TT
9424330 GTAAAAGCTT
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
67 63 1.00
ACGTcount: A:0.25, C:0.13, G:0.25, T:0.37
Consensus pattern (67 bp):
TTTTAGGTTTTGGTTGATCCCGTGAAAAACCATTATTAAAGGTTGTGGCTGAGCCTGTGAAAAGC
CA
Found at i:9432137 original size:35 final size:35
Alignment explanation
Indices: 9432000--9432136 Score: 197
Period size: 35 Copynumber: 3.9 Consensus size: 35
9431990 GTGTGGATAG
9432000 TGATGTTGATGTGTGCGAGTAGGGAGTGCACACGA
1 TGATGTTGATGTGTGCGAGTAGGGAGTGCACACGA
* *
9432035 TGATGTTGATGTGTGCGAGTAAGGAGTTCACACGA
1 TGATGTTGATGTGTGCGAGTAGGGAGTGCACACGA
*
9432070 TGATGTTGATGTGTGCGAGTAGGGAGTGCACATGA
1 TGATGTTGATGTGTGCGAGTAGGGAGTGCACACGA
* *
9432105 TGATATTGCCT-TGTGC-ATGTAGGGAGTGCACA
1 TGATGTTG-ATGTGTGCGA-GTAGGGAGTGCACA
9432137 TTGGCTTAGT
Statistics
Matches: 93, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
34 1 0.01
35 91 0.98
36 1 0.01
ACGTcount: A:0.23, C:0.12, G:0.36, T:0.28
Consensus pattern (35 bp):
TGATGTTGATGTGTGCGAGTAGGGAGTGCACACGA
Found at i:9437417 original size:54 final size:54
Alignment explanation
Indices: 9437358--9437463 Score: 203
Period size: 54 Copynumber: 2.0 Consensus size: 54
9437348 ATGCTGATAC
9437358 TGTCTGGCCATGTGCATGATGTGGTGGGATGCACATGAGCTGGGTGAGATGGGA
1 TGTCTGGCCATGTGCATGATGTGGTGGGATGCACATGAGCTGGGTGAGATGGGA
*
9437412 TGTCTGGCTATGTGCATGATGTGGTGGGATGCACATGAGCTGGGTGAGATGG
1 TGTCTGGCCATGTGCATGATGTGGTGGGATGCACATGAGCTGGGTGAGATGG
9437464 AATGATTGCT
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.18, C:0.12, G:0.42, T:0.27
Consensus pattern (54 bp):
TGTCTGGCCATGTGCATGATGTGGTGGGATGCACATGAGCTGGGTGAGATGGGA
Found at i:9444843 original size:54 final size:54
Alignment explanation
Indices: 9444779--9444884 Score: 158
Period size: 54 Copynumber: 2.0 Consensus size: 54
9444769 ACACTGATAC
* * *
9444779 TGTCCAGCTATGTGTACGATGTGGTGGGATGCACATGAGCTGGGTGAGATGGGA
1 TGTCCAGCTATGTGCACGATGTGGTGGGATGCACATGAACTGGGTGAAATGGGA
* * *
9444833 TGTCCGGCTATGTGCATGATGTGGTGGGATGCACATGAATTGGGTGAAATGG
1 TGTCCAGCTATGTGCACGATGTGGTGGGATGCACATGAACTGGGTGAAATGG
9444885 AATGATTGCT
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 46 1.00
ACGTcount: A:0.21, C:0.12, G:0.40, T:0.27
Consensus pattern (54 bp):
TGTCCAGCTATGTGCACGATGTGGTGGGATGCACATGAACTGGGTGAAATGGGA
Found at i:9448758 original size:35 final size:35
Alignment explanation
Indices: 9448719--9448926 Score: 335
Period size: 35 Copynumber: 5.9 Consensus size: 35
9448709 AGTGTGGATA
9448719 ATGATGTTGATGTGTGCGAGTAGGGAGTGCACACG
1 ATGATGTTGATGTGTGCGAGTAGGGAGTGCACACG
9448754 ATGATGTTGATGTGTGCGAGTAGGGAGTGCACACG
1 ATGATGTTGATGTGTGCGAGTAGGGAGTGCACACG
* *
9448789 ATGATGTTGATGTGTGCGAATAAGGAGTGCACACG
1 ATGATGTTGATGTGTGCGAGTAGGGAGTGCACACG
* * *
9448824 ATGATGTTGATGTGTGCGAATAAGGAGTGCACATG
1 ATGATGTTGATGTGTGCGAGTAGGGAGTGCACACG
9448859 ATGATGTTGATGTGTGCGAGTAGGGAGTGCACACG
1 ATGATGTTGATGTGTGCGAGTAGGGAGTGCACACG
* * * *
9448894 ACGATCTTTATTTGTGCGAGTAGGGAGTGCACA
1 ATGATGTTGATGTGTGCGAGTAGGGAGTGCACA
9448927 TTGGCTGAAT
Statistics
Matches: 163, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 163 1.00
ACGTcount: A:0.25, C:0.12, G:0.37, T:0.27
Consensus pattern (35 bp):
ATGATGTTGATGTGTGCGAGTAGGGAGTGCACACG
Found at i:9455462 original size:15 final size:15
Alignment explanation
Indices: 9455434--9455472 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
9455424 TAAGCCAAAC
9455434 CTTTCTTGTCT-TTTT
1 CTTTCTT-TCTCTTTT
9455449 C-TTCTTTCTCTTTT
1 CTTTCTTTCTCTTTT
9455463 CTTTCTTTCT
1 CTTTCTTTCT
9455473 TCCTTTCTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 3 0.14
14 10 0.45
15 9 0.41
ACGTcount: A:0.00, C:0.26, G:0.03, T:0.72
Consensus pattern (15 bp):
CTTTCTTTCTCTTTT
Found at i:9458480 original size:36 final size:35
Alignment explanation
Indices: 9458428--9458532 Score: 120
Period size: 36 Copynumber: 2.9 Consensus size: 35
9458418 TCTCACCCAG
* *
9458428 ATCGTGTGCACCCCCACATCGCGCACAGCTAATGCC
1 ATCGTGTGC-TCCCCACATCGTGCACAGCTAATGCC
* *
9458464 ATCGTGTGCTCTCCCACATCGTACAAAGCTAATGCC
1 ATCGTGTGCTC-CCCACATCGTGCACAGCTAATGCC
* * *
9458500 ATTGTGTGCTCCCTTACATCGTGCACAGGTAAT
1 ATCGTGTGCTCCC-CACATCGTGCACAGCTAAT
9458533 ATCATCATTC
Statistics
Matches: 58, Mismatches: 9, Indels: 4
0.82 0.13 0.06
Matches are distributed among these distances:
35 3 0.05
36 55 0.95
ACGTcount: A:0.23, C:0.33, G:0.19, T:0.25
Consensus pattern (35 bp):
ATCGTGTGCTCCCCACATCGTGCACAGCTAATGCC
Found at i:9465218 original size:171 final size:169
Alignment explanation
Indices: 9464909--9465583 Score: 651
Period size: 171 Copynumber: 3.9 Consensus size: 169
9464899 AATCTTTAAA
* * * ** *
9464909 TTACTCGCTTTAAATGATTTTATAATCGTATAAATGATTTGAAGTTGAATTACTTTTCATTTTTT
1 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTCATTTTTG
* * * * *
9464974 GTTAAAATAGATCATAATTGGATGTTTTCCTCGAGAAACGTGAAGCAAAAGCCATCCATTGGTAT
66 GTTAAAATAAATCATAATTAGATG-TTTCCTCGAGAAACGTCAAGC-AAAGCCATCCATTGATAA
**
9465039 GAAAAGTCCATTTATAGTTGGTCATGCCTTCAAAAGCCTTG
129 GAAAAGTCCATTTATAGTTACTCATGCCTTCAAAAGCCTTG
* * * * *
9465080 TGACTCCCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTCAATTTTTTTTCACTTTAG
1 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTCATTTTTG
* * * ** * *
9465145 GTTAAAATAAATCATAATTAGATGTTCGCCTCAAGAAACCTTTAGCATAAGTCATCCACTGATAA
66 GTTAAAATAAATCATAATTAGATGTT-TCCTCGAGAAACGTCAAGCA-AAGCCATCCATTGATAA
* * * *
9465210 GGAAAGTCCATTTATAGTCACTCATGCCTTTGAGAA-CCTTG
129 GAAAAGTCCATTTATAGTTACTCATGCC-TTCAAAAGCCTTG
* * * *
9465251 TTAC-CTGCTTTAAATGGCTTCACAATCTCATAAATGATTTTAAGTT-AATTTTTTTTTCATTTT
1 TTACTC-GCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA-TTTTTTTTCATTTT
* * *
9465314 TGGTTAAAACAAATCATAATTGAACAT-TTTCCTCGAGAAACGTCAAGTGAAAGCCATCCATTGA
64 TGGTTAAAATAAATCATAATT--AGATGTTTCCTCGAGAAACGTCAAG-CAAAGCCATCCATTGA
* * * * ** *
9465378 CAAGAAAAGTCTATTTACAGTTACTCGTGCCTTTGAAAGCCTAG
126 TAAGAAAAGTCCATTTATAGTTACTCATGCCTTCAAAAGCCTTG
* * *
9465422 TTACTCACTTTAAATGGGTTTATAATCTTATAAATGATTTTAAGTTGAATTGTTTGTTCGA-TTT
1 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATT-TTTTTTC-ATTTT
* * * * * * *
9465486 TGGTTAAAATAAATCATAATTGGATGTTTACCTTG-GTAAACGTGAAGTGAAACCCACCCATTGG
64 TGGTTAAAATAAATCATAATTAGATGTTT-CCTCGAG-AAACGTCAAG-CAAAGCCATCCATTGA
* ** **
9465550 CAATCAAAGTCCATTTATAGCCACTCATGCCTTC
126 TAAGAAAAGTCCATTTATAGTTACTCATGCCTTC
9465584 GAAACCCTAA
Statistics
Matches: 410, Mismatches: 78, Indels: 31
0.79 0.15 0.06
Matches are distributed among these distances:
170 12 0.03
171 301 0.73
172 93 0.23
173 4 0.01
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.37
Consensus pattern (169 bp):
TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTCATTTTTG
GTTAAAATAAATCATAATTAGATGTTTCCTCGAGAAACGTCAAGCAAAGCCATCCATTGATAAGA
AAAGTCCATTTATAGTTACTCATGCCTTCAAAAGCCTTG
Found at i:9465932 original size:171 final size:171
Alignment explanation
Indices: 9465621--9466860 Score: 1067
Period size: 171 Copynumber: 7.2 Consensus size: 171
9465611 CTCGAAAAAT
* * * * * *
9465621 GTGAAGCGAAAGCCATTCATTAACAATAAATGTCCATTTATAGTCACTCATGCCTTTGAAAGCCT
1 GTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCT
* * * * * * * *
9465686 AGTTACTCGATTTAAATGGTTTTAAAACCTTATAAGTGATTCTAAGTTGATTTTTTTTTCATTTT
66 TGTTACTCGCTTTAAATGGTTTTATAACTTTATAAATGATTTTAAATTGA-ATTTTTTTCATTTT
* * * * * *
9465751 TGGCTAAAATAGATCACAATTAGATGTTTACCA-TGAAAAAC
130 TCGTTAAAATAGATCATAATTTGATGTTTAGCATTGAGAAAC
* * * * * * *
9465792 ATGAGGGAAAAGTCAACCATTGACAAGGAAAGTCCATTTATAGTCACCCATGCCTTCGAAAGCCT
1 GTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCT
* * * * * *
9465857 TGTTACTTGCTTTAAGTGGTTTTGTAACTTTCTAAATGATTTTAAATTAAATTTATTTTAATTTT
66 TGTTACTCGCTTTAAATGGTTTTATAACTTTATAAATGATTTTAAATTGAATTT-TTTTCATTTT
* * * *
9465922 TCATTAAAATAAATCATAATTTGGTGTTTA-CATTGGGAAAC
130 TCGTTAAAATAGATCATAATTTGATGTTTAGCATTGAGAAAC
* * * * * * *
9465963 ATGAAGCACAAGACATCCATTGACAAGAAAAATCTATTTATAGTTACTCATGCCTTCGAAAGCCA
1 GTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCT
* * * *
9466028 AGTTACTCACTTTAAATGGTTTTATAA-TCTCATAAATGATTTTAAGTTGAATTTGTTTTCATTT
66 TGTTACTCGCTTTAAATGGTTTTATAACT-TTATAAATGATTTTAAATTGAATTT-TTTTCATTT
* * * *
9466092 TTGGTTAAAATAGATCCA-AAATGGATGTTT-GCCTTGAGAAAC
129 TTCGTTAAAATAGAT-CATAATTTGATGTTTAGCATTGAGAAAC
* * * * * * *
9466134 TTGAAGC-GAAGCCTTCGATTGACAAGAAAAGTCTATTTTATAGTTACTCATGCCTTTGAAAGCC
1 GTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCA-TTTATAGTCACTCATGCCTTCGAAAGCC
* * * * **
9466198 TTGTTACTCGCTTTAAATGGTTTTATAA-TCTAATAAATGATTTGAAGTTGAGTTTTTTTTTTTT
65 TTGTTACTCGCTTTAAATGGTTTTATAACT-TTATAAATGATTTTAAATTGA-ATTTTTTTCATT
* * * * * *
9466262 TTTGGTT-AAACAGATCGTAATTTGAT-TTTTGTATTGGGAAAC
128 TTTCGTTAAAATAGATCATAATTTGATGTTTAGCATTGAGAAAC
* * * * *
9466304 GTGAAGCAAAAACCATCCATTGGCATGAAAAGTCCATTTATTGTCACTCATGCCTTAGAAAGCCT
1 GTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCT
* * * * * *
9466369 TGGTACTTGCTTTAAGTGGTTTTATAACTTTATAAATGATTTTAAACTGACCTTTTGTTCA-TTT
66 TGTTACTCGCTTTAAATGGTTTTATAACTTTATAAATGATTTTAAATTGA-ATTTTTTTCATTTT
* * **
9466433 TCGGTTAAAAGAGATCATAATTTGATG-TTGGCATCAAGAAAC
130 TC-GTTAAAATAGATCATAATTTGATGTTTAGCATTGAGAAAC
* * * * *
9466475 GTGAAGTAAAAGCCATCCATTGATAA-AGAAAGTCAATATATAGTCACTCATGCCTTCGAAAGTC
1 GTGAAGCAAAAGCCATCCATTGACAAGA-AAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCC
* *
9466539 TTATTACTCG-TCTTAAGTGGTTTTATAACTTTATAAATGATTTTAAATTGAATTTTTTTCATTT
65 TTGTTACTCGCT-TTAAATGGTTTTATAACTTTATAAATGATTTTAAATTGAATTTTTTTCATTT
* * * *
9466603 TTCATTAAAATAGATCGTAACTTGATGTTT-GCATTGGGAAAC
129 TTCGTTAAAATAGATCATAATTTGATGTTTAGCATTGAGAAAC
* * * *
9466645 GTGAAGCAAAAGCAATCCATTGACAAGAAATGTCCATTTATATTCACTCATGCCTTCAAACTCAT
1 GTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAA---A-
* * * * * * *
9466710 GCCTTCAAAAGCTGGGTTATTCAC-TTAATTGGTTTTATAA-TCTCATAAATGATTATAAGTTAA
62 GCC-T-------T--GTTACTCGCTTTAAATGGTTTTATAACT-TTATAAATGATTTTAAATTGA
* ** * * * *
9466773 ATTTGTTTTCA-TTTTGGTTAAACCAAATCATAATTAGATGTTT-TCCTTGAGAAAC
116 ATTT-TTTTCATTTTTCGTTAAAATAGATCATAATTTGATGTTTAGCATTGAGAAAC
9466828 GTGAAGCAAAAGCCATCCATTGACAAGAAAAGT
1 GTGAAGCAAAAGCCATCCATTGACAAGAAAAGT
9466861 ATCACGACCC
Statistics
Matches: 861, Mismatches: 172, Indels: 60
0.79 0.16 0.05
Matches are distributed among these distances:
169 8 0.01
170 222 0.26
171 509 0.59
172 5 0.01
173 1 0.00
174 2 0.00
175 1 0.00
182 2 0.00
183 100 0.12
184 11 0.01
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.37
Consensus pattern (171 bp):
GTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCT
TGTTACTCGCTTTAAATGGTTTTATAACTTTATAAATGATTTTAAATTGAATTTTTTTCATTTTT
CGTTAAAATAGATCATAATTTGATGTTTAGCATTGAGAAAC
Found at i:9466432 original size:341 final size:338
Alignment explanation
Indices: 9465621--9466860 Score: 1143
Period size: 341 Copynumber: 3.6 Consensus size: 338
9465611 CTCGAAAAAT
* * * * * * *
9465621 GTGAAGCGAAAGCCATTCATTAACAATAAATGTCCATTTATAGTCACTCATGCCTTTGAAAGCCT
1 GTGAAGCAAAAACCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTAGAAAGCCT
* * * * * *
9465686 AGTTACTCGATTTAAATGGTTTTAAAACCTTATAAGTGATTCTAAGTTGATTTTTTTTTCATTTT
66 AGTTACTCGCTTTAAATGGTTTTATAACTTTATAAATGATTTTAAGTTGA-ATTTTTTTCATTTT
* * * * * * * *
9465751 TGGCTAAAATAGATCACAATTAGATGTTTACCATGAAAAACATGAGGGAAAAGTCAACCATTGAC
130 TGGTTAAAATAGATCACAATTAGATGTTTGCCTTGAGAAACATGA-AGAGAAGCCATCCATTGAC
* * * *
9465816 AAGGAAAGTCCATTTATAGTCACCCATGCCTTCGAAAGCCTTGTTACTTGCTTTAAGTGGTTTTG
194 AAGAAAAGT-CATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTA
* * * * * *
9465881 TAACTTTCTAAATGATTTTAAATTAAATTTATTTTAATTTTTCATTAAAATAAATCATAATTTGG
258 TAACTTTATAAATGATTTTAAATT-GATTTTTTTTAATTTTTCATTAAAATAGATCGTAATTTGA
*
9465946 TGTTTACATTGGGAAAC
322 TGTTTGCATTGGGAAAC
* * * * * *
9465963 ATGAAGCACAAGA-CATCCATTGACAAGAAAAATCTATTTATAGTTACTCATGCCTTCGAAAGCC
1 GTGAAGCA-AAAACCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTAGAAAGCC
* * *
9466027 AAGTTACTCACTTTAAATGGTTTTATAA-TCTCATAAATGATTTTAAGTTGAATTTGTTTTCATT
65 TAGTTACTCGCTTTAAATGGTTTTATAACT-TTATAAATGATTTTAAGTTGAATTT-TTTTCATT
* * * * * *
9466091 TTTGGTTAAAATAGATC-CAAAATGGATGTTTGCCTTGAGAAACTTGAAGCGAAGCCTTCGATTG
128 TTTGGTTAAAATAGATCAC-AATTAGATGTTTGCCTTGAGAAACATGAAGAGAAGCCATCCATTG
* * *
9466155 ACAAGAAAAGTCTATTTTATAGTTACTCATGCCTTTGAAAGCCTTGTTACTCGCTTTAAATGGTT
192 ACAAGAAAAGTC-A-TTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTT
* * * ** ** *
9466220 TTATAA-TCTAATAAATGATTTGAAGTTGAGTTTTTTTTTTTTTTTGGTT-AAACAGATCGTAAT
255 TTATAACT-TTATAAATGATTTTAAATTGA-TTTTTTTTAATTTTTCATTAAAATAGATCGTAAT
* *
9466283 TTGATTTTTGTATTGGGAAAC
318 TTGATGTTTGCATTGGGAAAC
* * *
9466304 GTGAAGCAAAAACCATCCATTGGCATGAAAAGTCCATTTATTGTCACTCATGCCTTAGAAAGCCT
1 GTGAAGCAAAAACCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTAGAAAGCCT
* * * * ** * *
9466369 TGGTACTTGCTTTAAGTGGTTTTATAACTTTATAAATGATTTTAAACTGACCTTTTGTTCATTTT
66 AGTTACTCGCTTTAAATGGTTTTATAACTTTATAAATGATTTTAAGTTGA-ATTTTTTTCATTTT
* * * * * * ** * * *
9466434 CGGTTAAAAGAGATCATAATTTGATGTTGGCATCAAGAAACGTGAAGTAAAAGCCATCCATTGAT
130 TGGTTAAAATAGATCACAATTAGATGTTTGCCTTGAGAAACATGAAG-AGAAGCCATCCATTGAC
* * *
9466499 AA-AGAAAGTCAATATATAGTCACTCATGCCTTCGAAAGTCTTATTACTCG-TCTTAAGTGGTTT
194 AAGA-AAAGTC-ATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCGCT-TTAAGTGGTTT
* * *
9466562 TATAACTTTATAAATGATTTTAAATTGAATTTTTTTCATTTTTCATTAAAATAGATCGTAACTTG
256 TATAACTTTATAAATGATTTTAAATTGATTTTTTTTAATTTTTCATTAAAATAGATCGTAATTTG
9466627 ATGTTTGCATTGGGAAAC
321 ATGTTTGCATTGGGAAAC
* * * *
9466645 GTGAAGCAAAAGCAATCCATTGACAAGAAATGTCCATTTATATTCACTCATGCCTTCA-AACTCA
1 GTGAAGCAAAAACCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTT-AGAA---A
* * * * * *
9466709 TGCCTTCAAAAGCTGGGTTATTCAC-TTAATTGGTTTTATAA-TCTCATAAATGATTATAAGTTA
62 -GCC-T----A-----GTTACTCGCTTTAAATGGTTTTATAACT-TTATAAATGATTTTAAGTTG
** * * * *
9466772 AATTTGTTTTCA-TTTTGGTTAAACCAAATCATAATTAGATGTTTTCCTTGAGAAACGTGAAGCA
115 AATTT-TTTTCATTTTTGGTTAAAATAGATCACAATTAGATGTTTGCCTTGAGAAACATGAAG-A
*
9466836 AAAGCCATCCATTGACAAGAAAAGT
178 GAAGCCATCCATTGACAAGAAAAGT
9466861 ATCACGACCC
Statistics
Matches: 718, Mismatches: 145, Indels: 59
0.78 0.16 0.06
Matches are distributed among these distances:
340 19 0.03
341 340 0.47
342 243 0.34
343 2 0.00
344 1 0.00
345 3 0.00
346 1 0.00
353 67 0.09
354 37 0.05
355 5 0.01
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.37
Consensus pattern (338 bp):
GTGAAGCAAAAACCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTAGAAAGCCT
AGTTACTCGCTTTAAATGGTTTTATAACTTTATAAATGATTTTAAGTTGAATTTTTTTCATTTTT
GGTTAAAATAGATCACAATTAGATGTTTGCCTTGAGAAACATGAAGAGAAGCCATCCATTGACAA
GAAAAGTCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAA
CTTTATAAATGATTTTAAATTGATTTTTTTTAATTTTTCATTAAAATAGATCGTAATTTGATGTT
TGCATTGGGAAAC
Found at i:9466577 original size:512 final size:510
Alignment explanation
Indices: 9465621--9466700 Score: 1228
Period size: 512 Copynumber: 2.1 Consensus size: 510
9465611 CTCGAAAAAT
* * *
9465621 GTGAAGCGAAAGCCATTCATTAACAATAAATGTCCATTTATAGTCACTCATGCCTTTGAAAGCCT
1 GTGAAGCG-AAGCC-TTCATTGACAAGAAATGTCCATTTATAGTTACTCATGCCTTTGAAAGCCT
* *
9465686 AGTTACTCGATTTAAATGGTTTTAAAACCTTATAAGTGATTCTAAGTTGATTTTTTTTTCATTTT
64 AGTTACTCGATTTAAATGGTTTTAAAACCTAATAAATGATTCTAAGTTGATTTTTTTTTCATTTT
* * * **
9465751 TGGCTAAAATAGATCACAATTAGATGTTTACCATGAAAAACATGAGGGAAAAGTCAACCATTGAC
129 TGGCTAAAACAGATCACAATTAGATGTTTACCATGAAAAACATGAAGCAAAAACCAACCATTGAC
* * * *
9465816 AAGGAAAGTCCATTTATAGTCACCCATGCCTTCGAAAGCCTTGTTACTTGCTTTAAGTGGTTTTG
194 AAGAAAAGTCCATTTATAGTCACCCATGCCTTAGAAAGCCTTGGTACTTGCTTTAAGTGGTTTTA
* * * * *
9465881 TAACTTTCTAAATGATTTTAAATTAAATTTATTTTAATTTTTCATTAAAATAAATCATAATTTGG
259 TAACTTTATAAATGATTTTAAATGAAATTTATGTTAATTTTTCATTAAAAGAAATCATAATTTGA
* *** * * * * *
9465946 TGTTTACATTGGGAAACATGAAGCACAAGACATCCATTGACAAGAAAAATCTATTTATAGTTACT
324 TGTTGACATCAAGAAACATGAAGCAAAAGACATCCATTGAAAAGAAAAATCAATATATAGTCACT
*
9466011 CATGCCTTCGAAAGCCAAGTTACTCACTTTAAATGGTTTTATAATCTCATAAATGATTTTAAGTT
389 CATGCCTTCGAAAGCCAAGTTACTCACTTTAAATGGTTTTATAATCTCATAAATGATTTTAAATT
** *
9466076 GAATTTGTTTTCATTTTTGGTTAAAATAGATCCAAAATGGATGTTTGCCTTGAGAAAC
454 GAATTT-TTTTCATTTTTCATTAAAATAGATCCAAAATGGATGTTTGCATTGAGAAAC
* * *
9466134 TTGAAGCGAAGCCTTCGATTGACAAGAAAAGTCTATTTTATAGTTACTCATGCCTTTGAAAGCCT
1 GTGAAGCGAAGCCTTC-ATTGACAAGAAATGTCCA-TTTATAGTTACTCATGCCTTTGAAAGCCT
* * * * *
9466199 TGTTACTCGCTTTAAATGGTTTTATAATCTAATAAATGATT-TGAAGTTGAGTTTTTTTTT-TTT
64 AGTTACTCGATTTAAATGGTTTTAAAACCTAATAAATGATTCT-AAGTTGA-TTTTTTTTTCATT
* ** * *** ** * *
9466262 TTTGG-TTAAACAGATCGTAATTTGAT-TTTTGTATTGGGAAACGTGAAGCAAAAACCATCCATT
127 TTTGGCTAAAACAGATCACAATTAGATGTTTACCA-TGAAAAACATGAAGCAAAAACCAACCATT
* * * *
9466325 GGCATGAAAAGTCCATTTATTGTCACTCATGCCTTAGAAAGCCTTGGTACTTGCTTTAAGTGGTT
191 GACAAGAAAAGTCCATTTATAGTCACCCATGCCTTAGAAAGCCTTGGTACTTGCTTTAAGTGGTT
** * * *
9466390 TTATAACTTTATAAATGATTTTAAACTGACCTTT-TGTTCA-TTTTCGGTTAAAAGAGATCATAA
256 TTATAACTTTATAAATGATTTTAAA-TGAAATTTATGTTAATTTTTC-ATTAAAAGAAATCATAA
* * * * *
9466453 TTTGATGTTGGCATCAAGAAACGTGAAGTAAAAGCCATCCATTGATAAAG-AAAGTCAATATATA
319 TTTGATGTTGACATCAAGAAACATGAAGCAAAAGACATCCATTGA-AAAGAAAAATCAATATATA
** * * *
9466517 GTCACTCATGCCTTCGAAAGTCTTA-TTACTC-GTCTTAAGTGGTTTTATAA-CTTTATAAATGA
383 GTCACTCATGCCTTCGAAAG-CCAAGTTACTCACT-TTAAATGGTTTTATAATC-TCATAAATGA
** * * *
9466579 TTTTAAATTGAATTTTTTTCATTTTTCATTAAAATAGATCGTAACTTGATGTTTGCATTGGGAAA
445 TTTTAAATTGAATTTTTTTCATTTTTCATTAAAATAGATCCAAAATGGATGTTTGCATTGAGAAA
9466644 C
510 C
* * *
9466645 GTGAAGCAAAAGCAATCCATTGACAAGAAATGTCCATTTATA-TTCACTCATGCCTT
1 GTGAAGC-GAAGC-CTTCATTGACAAGAAATGTCCATTTATAGTT-ACTCATGCCTT
9466701 CAAACTCATG
Statistics
Matches: 472, Mismatches: 81, Indels: 30
0.81 0.14 0.05
Matches are distributed among these distances:
510 2 0.00
511 80 0.17
512 285 0.60
513 96 0.20
514 9 0.02
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.38
Consensus pattern (510 bp):
GTGAAGCGAAGCCTTCATTGACAAGAAATGTCCATTTATAGTTACTCATGCCTTTGAAAGCCTAG
TTACTCGATTTAAATGGTTTTAAAACCTAATAAATGATTCTAAGTTGATTTTTTTTTCATTTTTG
GCTAAAACAGATCACAATTAGATGTTTACCATGAAAAACATGAAGCAAAAACCAACCATTGACAA
GAAAAGTCCATTTATAGTCACCCATGCCTTAGAAAGCCTTGGTACTTGCTTTAAGTGGTTTTATA
ACTTTATAAATGATTTTAAATGAAATTTATGTTAATTTTTCATTAAAAGAAATCATAATTTGATG
TTGACATCAAGAAACATGAAGCAAAAGACATCCATTGAAAAGAAAAATCAATATATAGTCACTCA
TGCCTTCGAAAGCCAAGTTACTCACTTTAAATGGTTTTATAATCTCATAAATGATTTTAAATTGA
ATTTTTTTCATTTTTCATTAAAATAGATCCAAAATGGATGTTTGCATTGAGAAAC
Found at i:9466709 original size:14 final size:14
Alignment explanation
Indices: 9466690--9466718 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
9466680 ATTTATATTC
9466690 ACTCATGCCTTCAA
1 ACTCATGCCTTCAA
9466704 ACTCATGCCTTCAA
1 ACTCATGCCTTCAA
9466718 A
1 A
9466719 AGCTGGGTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.31, C:0.34, G:0.07, T:0.28
Consensus pattern (14 bp):
ACTCATGCCTTCAA
Found at i:9468683 original size:21 final size:22
Alignment explanation
Indices: 9468657--9468697 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
9468647 CCTAGGTGAA
*
9468657 AAAATTCAAGGGAA-AAGTGTG
1 AAAATTCAAGGAAACAAGTGTG
9468678 AAAATTCAAGGAAACAAGTG
1 AAAATTCAAGGAAACAAGTG
9468698 AAAAAAGGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.51, C:0.07, G:0.24, T:0.17
Consensus pattern (22 bp):
AAAATTCAAGGAAACAAGTGTG
Found at i:9468698 original size:20 final size:21
Alignment explanation
Indices: 9468657--9468701 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
9468647 CCTAGGTGAA
*
9468657 AAAATTCAAGGGAAAAGTGTG
1 AAAATTCAAGGGAAAAGAGTG
9468678 AAAATTCAA-GGAAACA-AGTG
1 AAAATTCAAGGGAAA-AGAGTG
9468698 AAAA
1 AAAA
9468702 AAGGTAAGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 12 0.55
21 10 0.45
ACGTcount: A:0.56, C:0.07, G:0.22, T:0.16
Consensus pattern (21 bp):
AAAATTCAAGGGAAAAGAGTG
Found at i:9468702 original size:21 final size:21
Alignment explanation
Indices: 9468656--9468703 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
9468646 CCCTAGGTGA
*
9468656 AAAAATTCAAGGGAAAAGTGT
1 AAAAATTCAAGGAAAAAGTGT
* *
9468677 GAAAATTCAAGGAAACAAGTGA
1 AAAAATTCAAGGAAA-AAGTGT
9468699 AAAAA
1 AAAAA
9468704 GGTAAGATTT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
21 13 0.59
22 9 0.41
ACGTcount: A:0.58, C:0.06, G:0.21, T:0.15
Consensus pattern (21 bp):
AAAAATTCAAGGAAAAAGTGT
Found at i:9471110 original size:42 final size:42
Alignment explanation
Indices: 9470982--9471110 Score: 143
Period size: 43 Copynumber: 3.0 Consensus size: 42
9470972 CCCTCCACAC
* * * ** *
9470982 TCAGCTCATGTGCACTCCCTACTCGCACATGGCCAAGTTATCA
1 TCAGCTCATGTGCACTCCC-ACACGCACATAGTCGGGTCATCA
* * *
9471025 -CTAGCTCATGTGCACTCTCACACCGTACATAGTTGGGTCATCA
1 TC-AGCTCATGTGCACTCCCACA-CGCACATAGTCGGGTCATCA
9471068 TCAGCTCATGTGCACTCCCACACGCACATAGTCGGGTCATCA
1 TCAGCTCATGTGCACTCCCACACGCACATAGTCGGGTCATCA
9471110 T
1 T
9471111 TATTACAAAA
Statistics
Matches: 71, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
42 22 0.31
43 48 0.68
44 1 0.01
ACGTcount: A:0.23, C:0.33, G:0.18, T:0.26
Consensus pattern (42 bp):
TCAGCTCATGTGCACTCCCACACGCACATAGTCGGGTCATCA
Found at i:9471928 original size:20 final size:19
Alignment explanation
Indices: 9471882--9471928 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
9471872 TGGGAGGAAG
9471882 AAGAA-GAAAAAGCTGCTA
1 AAGAATGAAAAAGCTGCTA
* *
9471900 GAGAGATGAAAAAGTTGCTGA
1 AAGA-ATGAAAAAGCTGCT-A
9471921 AAGAATGA
1 AAGAATGA
9471929 TATTTATAGC
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
18 3 0.13
19 1 0.04
20 15 0.65
21 4 0.17
ACGTcount: A:0.51, C:0.06, G:0.28, T:0.15
Consensus pattern (19 bp):
AAGAATGAAAAAGCTGCTA
Found at i:9478512 original size:2 final size:2
Alignment explanation
Indices: 9478505--9478536 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
9478495 CTATAACATT
9478505 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
9478537 CATACATNTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:9478611 original size:151 final size:150
Alignment explanation
Indices: 9478393--9478694 Score: 495
Period size: 151 Copynumber: 2.0 Consensus size: 150
9478383 AAAAGTGATC
* *
9478393 TTGTTACATCAAAAGCCATTTTTCTTGCTGAAATGAAAAGTAATTTGGGGACAATTAACATTGCC
1 TTGTTACATCAAAAGCCATTTTTCTTGCTGAAATGAAAAGCAATTTGGGGACAATTAACAATGCC
9478458 AACGA-ACAACACAATCACAAATATTTTCATAAACTTTCTATAACATT-TATATATATATATATA
66 AAC-ATACAACACAATCACAAATATTTTCATAAACTTTCTATAAC-TTATATATATATATATATA
9478521 TATATATATATATATACATACA
129 TATATATATATATATACATACA
*
9478543 TNTGTTACATCAAAAAGCCA-TTTTCTTGTTGAAATGAAAAGCAATTT-GGGAGCAATTAACAAT
1 T-TGTTACATC-AAAAGCCATTTTTCTTGCTGAAATGAAAAGCAATTTGGGGA-CAATTAACAAT
*
9478606 GCCAACATACAACACAATCACAATTATTTTCATAAACTTTCTATAACTTATATATATATATATAT
63 GCCAACATACAACACAATCACAAATATTTTCATAAACTTTCTATAACTTATATATATATATATAT
9478671 ATATATATATATATATACATACA
128 ATATATATATATATATACATACA
9478694 T
1 T
9478695 CATCATGCAT
Statistics
Matches: 143, Mismatches: 4, Indels: 9
0.92 0.03 0.06
Matches are distributed among these distances:
150 8 0.06
151 127 0.89
152 8 0.06
ACGTcount: A:0.42, C:0.15, G:0.08, T:0.35
Consensus pattern (150 bp):
TTGTTACATCAAAAGCCATTTTTCTTGCTGAAATGAAAAGCAATTTGGGGACAATTAACAATGCC
AACATACAACACAATCACAAATATTTTCATAAACTTTCTATAACTTATATATATATATATATATA
TATATATATATATACATACA
Found at i:9478661 original size:2 final size:2
Alignment explanation
Indices: 9478654--9478687 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
9478644 TTCTATAACT
9478654 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
9478688 CATACATCAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:9478803 original size:43 final size:42
Alignment explanation
Indices: 9478724--9478848 Score: 126
Period size: 43 Copynumber: 2.9 Consensus size: 42
9478714 CCACACTCAA
* * * * * *
9478724 CTCATCTGAACTCCCTACTCGCACATGGCCGAGTCATCATCAG
1 CTCATGTGCACTCCC-ACACGCACATAGTCGGGTCATCATCAG
* * * *
9478767 GTCATGTGCACTCCCGCACTGTACATAG-CTGGGTCATGATCAG
1 CTCATGTGCACTCCCACAC-GCACATAGTC-GGGTCATCATCAG
9478810 CTCATGTGCACTCCCACACGCACATAGTCGGGTCATCAT
1 CTCATGTGCACTCCCACACGCACATAGTCGGGTCATCAT
9478849 TATCACACAA
Statistics
Matches: 66, Mismatches: 13, Indels: 7
0.77 0.15 0.08
Matches are distributed among these distances:
42 19 0.29
43 47 0.71
ACGTcount: A:0.22, C:0.34, G:0.20, T:0.24
Consensus pattern (42 bp):
CTCATGTGCACTCCCACACGCACATAGTCGGGTCATCATCAG
Found at i:9480569 original size:172 final size:170
Alignment explanation
Indices: 9480184--9481371 Score: 1166
Period size: 172 Copynumber: 6.9 Consensus size: 170
9480174 TTGTGAAGTG
* * * * * * * * *
9480184 AAAGCCATCTATTGAAAAGAAAAATCCATTTGTAGTCACTCTTTCCTTCGAAAGCCCAATTACTA
1 AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTAGTTACTC
* * * * * *
9480249 GCTTTAAATAGTTTTTTAAT-TGTATAAATGATTTGAACTTGAATTTCTTTTCATTTTTGGTTAA
66 GATTTAAATGGTTTTATAATCT-TATAAATGATTTTAAGTTGAATTTTTTTTCA-TTTTGGTTAA
* * *
9480313 AACAAATTATAATTGGATGTTTGCCCTCGA-AAACATGAAGCA
129 AACAGATTATAATTGGATGTTTG-CCTCAAGAAACATGAGGCA
* * * * *
9480355 AAAGCCATCTATTGGCATGAAAAGTACATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTC
1 AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTAGTTACTC
* *
9480420 GATTTAAATGGTTTTATAATCGTATAAATGATTTTAAATTGAATTTTTTTTTCATTTTCGGTTAA
66 GATTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA-TTTTTTTTCATTTT-GGTTAA
* * * *
9480485 AATAGATTTTAATTAGATGTTCGCCTCAAGAAACATGAGGCA
129 AACAGATTATAATTGGATGTTTGCCTCAAGAAACATGAGGCA
* * * * * * * * * *
9480527 TAAGTCATCCATTGATAAGGAAAGTCTATTTATAGACACTCATGCCTTTGAGAGCCTAGGTAGTC
1 AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTAGTTACTC
* ** * *
9480592 -ACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTAAATTGTTTGTTTGTTTTTAGCTA
66 GA-TTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATT-TTT-TTTCATTTTGGTTA
* * * **
9480656 AAATC-GATCATAATTGGATGTTTGCCTCAAAAAACATGAAGTG
128 AAA-CAGATTATAATTGGATGTTTGCCTCAAGAAACATGAGGCA
**
9480699 AAAGCCA-CCGATTGACAATTAAAGTCCATTTATAG-CTACTCATGCCTTCGAAAGCCTAGTTAC
1 AAAGCCATCC-ATTGACAAGAAAAGTCCATTTATAGTC-ACTCATGCCTTCGAAAGCCTAGTTAC
* * *
9480762 TCGCTTTAAATGGGTTTATAATCTTATAAATTATTTTAAGTTGAATTTTTTTTTCATTCTTGGTT
64 TCGATTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA-TTTTTTTTCATT-TTGGTT
* ** * * **
9480827 AAAACAG-TTCATAATTGGATGTCTGTGT-AGGAAA-ATGTGAAGTG
127 AAAACAGATT-ATAATTGGATGTTTGCCTCAAGAAACA--TGAGGCA
*
9480871 AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCTTGCCTT-GAAAAGCCTAGTTACT
1 AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCG-AAAGCCTAGTTACT
* *
9480935 C-ACTTTAAATGGTTTTATAATCTTATAAATGA-TTTAAGTTGAATTTGTTTTCAATTTTAGTTA
65 CGA-TTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTC-ATTTTGGTTA
* * * ** * * * *
9480998 GACCATAGCATAATTGGATGTTTGTCTCAAAAAACGTGATGCA
128 AAACAGATTATAATTGGATGTTTGCCTCAAGAAACATGAGGCA
* * * * * * **
9481041 AAAGCCATCAATTGACAAGAAAAGTCCATTTATAGTCATTTATGCCTTCAAAAGCTTTGTTACAA
1 AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTAGTTACTC
* * *
9481106 GGTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTT-AGTTTTAGTCAAA
66 GATTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTCA-TTTTGGTTAAA
* * * *
9481170 ACAGATCATAATTGGATGTTTGCCTCTAGATACGTGAGGCA
130 ACAGATTATAATTGGATGTTTGCCTCAAGAAACATGAGGCA
* * *
9481211 AAAGTCATCCACTAACAAGAAAAGTCCATTTTATAGTCACTCATGCCTTCGAAAGCCTTA-TTAC
1 AAAGCCATCCATTGACAAGAAAAGTCCA-TTTATAGTCACTCATGCCTTCGAAAGCC-TAGTTAC
* * *
9481275 TCGCTTTAAATGG-TTTATAATCTCATAAATGATTTTAAGTTGAATTTTTCTT-ATTTTTGGTTA
64 TCGATTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTCA-TTTTGGTTA
* * * * *
9481338 AAACATATCATAATTGTATGTTTGTCACAAGAAA
128 AAACAGATTATAATTGGATGTTTGCCTCAAGAAA
9481372 AGTCCATTTA
Statistics
Matches: 840, Mismatches: 146, Indels: 63
0.80 0.14 0.06
Matches are distributed among these distances:
169 1 0.00
170 261 0.31
171 190 0.23
172 376 0.45
173 12 0.01
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.38
Consensus pattern (170 bp):
AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTAGTTACTC
GATTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTCATTTTGGTTAAAA
CAGATTATAATTGGATGTTTGCCTCAAGAAACATGAGGCA
Found at i:9480705 original size:344 final size:341
Alignment explanation
Indices: 9480033--9481321 Score: 1197
Period size: 344 Copynumber: 3.8 Consensus size: 341
9480023 AGGTCTCACA
* * * ** * * * *
9480033 AAAAGTCCATTTATAGTTACCCATACCTTCGAAAGTTTTGGTACTCGCTTTAAGTGGCTTTATAA
1 AAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCGATTTAAATGGTTTTATAA
* * * * ** * ** * *
9480098 -ATTAAAAAT-ATTTTTAAATTGAATTTTTTTTTCTTTTTCATTAAAATAGATCGTAATTTGACG
66 TCTTATAAATGA-TTTTAAGTTGAATTTTTTTTTCATTTTGGTTAAAACAGATTATAATTGGATG
* *** * * * * *
9480161 TTTGCACT--AGCAATTGTGAAGTG-AAAGCCATCTATTGAAAAGAAAAATCCATTTGTAGTCAC
130 TTCGC-CTCAAG-AAACATG-AG-GCAAAGTCATCCATTGACAAGAAAAGTCCATTTATAGTCAC
* * * * * * * *
9480223 TCTTTCCTTCGAAAGCCCAATTACT-AGCTTTAAATAGTTTTTTAAT-TGTATAAATGATTTGAA
191 TCATGCCTTTGAAAGCCTAGTTACTCA-CTTTAAATGGTTTTATAATCT-TATAAATGATTTTAA
* * * * * * ** *
9480286 CTTGAATTTCTTTTCATTTTTGGTTAAAACAA-ATTATAATTGGATGTTTGCCCTC-GAAAACAT
254 GTTGAATTTGTTTTCAATTTTAGCT-AGACAATAGCATAATTGGATGTTTG-CCTCAAAAAACAT
* *
9480349 GAAGCAAAAGCCATCTATTGGCATG
317 GAAGCAAAAGCCATCAATTGACATG
*
9480374 AAAAGTACATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCGATTTAAATGGTTTTATAA
1 AAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCGATTTAAATGGTTTTATAA
* * * * *
9480439 TCGTATAAATGATTTTAAATTGAATTTTTTTTTCATTTTCGGTTAAAATAGATTTTAATTAGATG
66 TCTTATAAATGATTTTAAGTTGAATTTTTTTTTCATTTT-GGTTAAAACAGATTATAATTGGATG
* * * *
9480504 TTCGCCTCAAGAAACATGAGGCATAAGTCATCCATTGATAAGGAAAGTCTATTTATAGACACTCA
130 TTCGCCTCAAGAAACATGAGGCA-AAGTCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCA
* * *
9480569 TGCCTTTGAGAGCCTAGGTAGTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTT-A
194 TGCCTTTGAAAGCCTAGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGA
* *** *
9480633 AATTGTTTGTTTGTTTTTAGCTA-A-AATCGATCATAATTGGATGTTTGCCTCAAAAAACATGAA
259 ATTTG-TT-TTCAATTTTAGCTAGACAAT--AGCATAATTGGATGTTTGCCTCAAAAAACATGAA
** * *
9480696 GTGAAAGCCACCGATTGACAAT-
320 GCAAAAGCCATCAATTGAC-ATG
* * * *
9480718 TAAAGTCCATTTATAG-CTACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGGTTTATA
1 AAAAGTCCATTTATAGTC-ACTCATGCCTTCGAAAGCCTTGTTACTCGATTTAAATGGTTTTATA
*
9480782 ATCTTATAAATTATTTTAAGTTGAATTTTTTTTTCATTCTTGGTTAAAACAG-TTCATAATTGGA
65 ATCTTATAAATGATTTTAAGTTGAATTTTTTTTTCATT-TTGGTTAAAACAGATT-ATAATTGGA
** * *
9480846 TG-TCTGTGT-AGGAAA-ATGTGAAGTG-AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGT
128 TGTTC-GCCTCAAGAAACA--TG-AG-GCAAAGTCATCCATTGACAAGAAAAGTCCATTTATAGT
*
9480907 CACTCTTGCC-TTGAAAAGCCTAGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGA-TTT
188 CACTCATGCCTTTG-AAAGCCTAGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTT
* * * *
9480970 AAGTTGAATTTGTTTTCAATTTTAGTTAGACCATAGCATAATTGGATGTTTGTCTCAAAAAACGT
252 AAGTTGAATTTGTTTTCAATTTTAGCTAGACAATAGCATAATTGGATGTTTGCCTCAAAAAACAT
* *
9481035 GATGCAAAAGCCATCAATTGACAAG
317 GAAGCAAAAGCCATCAATTGACATG
* * * * ** *
9481060 AAAAGTCCATTTATAGTCATTTATGCCTTCAAAAGCTTTGTTACAAGGTTTAAATGGTTTTATAA
1 AAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCGATTTAAATGGTTTTATAA
* * *
9481125 TCTTATAAATGATTTTAAGTTGAA-TTTTTTTT-AGTTTTAGTCAAAACAGATCATAATTGGATG
66 TCTTATAAATGATTTTAAGTTGAATTTTTTTTTCA-TTTTGGTTAAAACAGATTATAATTGGATG
* * * * * *
9481188 TTTGCCTCTAGATACGTGAGGCAAAAGTCATCCACTAACAAGAAAAGTCCATTTTATAGTCACTC
130 TTCGCCTCAAGAAACATGAGGC-AAAGTCATCCATTGACAAGAAAAGTCCA-TTTATAGTCACTC
* * *
9481253 ATGCCTTCGAAAGCCTTA-TTACTCGCTTTAAATGG-TTTATAATCTCATAAATGATTTTAAGTT
193 ATGCCTTTGAAAGCC-TAGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTT
9481316 GAATTT
257 GAATTT
9481322 TTCTTATTTT
Statistics
Matches: 784, Mismatches: 123, Indels: 82
0.79 0.12 0.08
Matches are distributed among these distances:
338 1 0.00
339 2 0.00
340 70 0.09
341 127 0.16
342 178 0.23
343 140 0.18
344 258 0.33
345 7 0.01
346 1 0.00
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.38
Consensus pattern (341 bp):
AAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCGATTTAAATGGTTTTATAA
TCTTATAAATGATTTTAAGTTGAATTTTTTTTTCATTTTGGTTAAAACAGATTATAATTGGATGT
TCGCCTCAAGAAACATGAGGCAAAGTCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
CCTTTGAAAGCCTAGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAAT
TTGTTTTCAATTTTAGCTAGACAATAGCATAATTGGATGTTTGCCTCAAAAAACATGAAGCAAAA
GCCATCAATTGACATG
Found at i:9481498 original size:139 final size:139
Alignment explanation
Indices: 9481225--9481499 Score: 371
Period size: 139 Copynumber: 2.0 Consensus size: 139
9481215 TCATCCACTA
*
9481225 ACAAGAAAAGTCCATTTTATAGTCACTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTT
1 ACAAGAAAAGTCCATTTTATAGTCACCCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTT
*
9481290 TATAATCTCATAAATGATTTTAAGTTGAATTTTTCTTATTTTTGGTTAAAACATATCATAATTGT
66 TATAATCTCATAAATGATTTTAAATTGAATTTTTCTTATTTTTGGTTAAAACATATCATAATTGT
9481355 ATGTTTGTC
131 ATGTTTGTC
* * *
9481364 ACAAGAAAAGTCCA-TTTATAGTCACCCATGCCTTTGAAAGCCTTA-TAGCTTGCTTTAAGTGGT
1 ACAAGAAAAGTCCATTTTATAGTCACCCATGCCTTCGAAAGCCTTATTA-CTCGCTTTAAATGG-
* * * * * *
9481427 TTTGTAACTTTC-TAAATTATTTTAAATTG-ATTTTTTTTCTTTTTAGGTTAAAATATATCATAA
64 TTTATAA-TCTCATAAATGATTTTAAATTGAATTTTTCTTATTTTT-GGTTAAAACATATCATAA
9481490 TT-TGATGTTT
127 TTGT-ATGTTT
9481500 TCATTGGGAA
Statistics
Matches: 120, Mismatches: 11, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
137 2 0.02
138 55 0.46
139 60 0.50
140 3 0.03
ACGTcount: A:0.30, C:0.13, G:0.12, T:0.44
Consensus pattern (139 bp):
ACAAGAAAAGTCCATTTTATAGTCACCCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTT
TATAATCTCATAAATGATTTTAAATTGAATTTTTCTTATTTTTGGTTAAAACATATCATAATTGT
ATGTTTGTC
Found at i:9481701 original size:171 final size:171
Alignment explanation
Indices: 9481369--9481702 Score: 358
Period size: 171 Copynumber: 2.0 Consensus size: 171
9481359 TTGTCACAAG
* * * *
9481369 AAAAGTCCATTTATAGTCACCCATGCCTTTGAAAGCCTTATAGCTTGCTTTAAGTGGTTTTGTAA
1 AAAAATCCATTTATAGTCACACATGCCTTCGAAAGCCTTATAGCTTGCTTTAAGTGGTTTTATAA
* * * * * * * *
9481434 CTTTCTAAATTATTTTAAATTGATTTTTTTTCTTTTTAGGTTAAAATATATCATAATTTGATGTT
66 CTTTATAAATGATTTTAAATTGAATTATTTTCTTTTTAGGTGAAAATAGACCATAATTTAATGTT
** * ***
9481499 TTCATTGGGAAACATAAAGTGACTGCCATCCATTGATATAA
131 TGAATTGGGAAACATAAAGGGAAAACCATCCATTGATATAA
*
9481540 AAAAATCCATTTACTA-TCACACATGCCTTCGAAA-CCTTTGTTA-CTTGCTTTAA-TAGGTTTT
1 AAAAATCCATTTA-TAGTCACACATGCCTTCGAAAGCC-TT-ATAGCTTGCTTTAAGT-GGTTTT
9481601 ATAACTTTATAAATGATTTTAAATTGAATTATTTTCATTTTT-GGTGAAAATAGACCAT-ATTTC
62 ATAACTTTATAAATGATTTTAAATTGAATTATTTTC-TTTTTAGGTGAAAATAGACCATAATTT-
** *
9481664 AATGTTTGAATT-GGAAATTGTGAAGGGAAAACCATCCAT
125 AATGTTTGAATTGGGAAA-CATAAAGGGAAAACCATCCAT
9481703 AGTCACTCAT
Statistics
Matches: 134, Mismatches: 22, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
170 12 0.09
171 113 0.84
172 9 0.07
ACGTcount: A:0.32, C:0.13, G:0.13, T:0.41
Consensus pattern (171 bp):
AAAAATCCATTTATAGTCACACATGCCTTCGAAAGCCTTATAGCTTGCTTTAAGTGGTTTTATAA
CTTTATAAATGATTTTAAATTGAATTATTTTCTTTTTAGGTGAAAATAGACCATAATTTAATGTT
TGAATTGGGAAACATAAAGGGAAAACCATCCATTGATATAA
Found at i:9486402 original size:33 final size:33
Alignment explanation
Indices: 9486364--9486509 Score: 265
Period size: 33 Copynumber: 4.4 Consensus size: 33
9486354 TACAAAATGG
9486364 GTATTTAGAAATAAGGTAGATGAACAAGGAAAT
1 GTATTTAGAAATAAGGTAGATGAACAAGGAAAT
*
9486397 GTATTTAGAAATAAAGTAGATGAACAAGGAAAT
1 GTATTTAGAAATAAGGTAGATGAACAAGGAAAT
*
9486430 GTATTTAGAAATAAGGTAGGTGAACAAGGAAAT
1 GTATTTAGAAATAAGGTAGATGAACAAGGAAAT
*
9486463 GTATTTAGAAATAAGGTAGATGAACAAAGAAAT
1 GTATTTAGAAATAAGGTAGATGAACAAGGAAAT
9486496 GTATTTAGAAATAA
1 GTATTTAGAAATAA
9486510 AGCTAGGCTG
Statistics
Matches: 108, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 108 1.00
ACGTcount: A:0.49, C:0.03, G:0.23, T:0.25
Consensus pattern (33 bp):
GTATTTAGAAATAAGGTAGATGAACAAGGAAAT
Found at i:9497354 original size:26 final size:26
Alignment explanation
Indices: 9497294--9497355 Score: 97
Period size: 26 Copynumber: 2.4 Consensus size: 26
9497284 ACCATATACC
*
9497294 CATCATCAACATGCACACCATCCCAT
1 CATCATCATCATGCACACCATCCCAT
*
9497320 CATCATCATCATGCACATCATCCCAT
1 CATCATCATCATGCACACCATCCCAT
*
9497346 TATCATCATC
1 CATCATCATC
9497356 TCATATGCAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.32, C:0.39, G:0.03, T:0.26
Consensus pattern (26 bp):
CATCATCATCATGCACACCATCCCAT
Found at i:9497650 original size:42 final size:42
Alignment explanation
Indices: 9497590--9497712 Score: 201
Period size: 42 Copynumber: 2.9 Consensus size: 42
9497580 ATGGGGGCAA
* *
9497590 CAACGGCTTATGTGCACTCCCACTCACACATAGCCGGGTCAG
1 CAACGGCTTATGTGCACTCCTACTCGCACATAGCCGGGTCAG
* * *
9497632 CAACGGCTTATATACACTCCTACTCGCACATAGTCGGGTCAG
1 CAACGGCTTATGTGCACTCCTACTCGCACATAGCCGGGTCAG
9497674 CAACGGCTTATGTGCACTCCTACTCGCACATAGCCGGGT
1 CAACGGCTTATGTGCACTCCTACTCGCACATAGCCGGGT
9497713 TCAAATCAAC
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 73 1.00
ACGTcount: A:0.24, C:0.33, G:0.21, T:0.22
Consensus pattern (42 bp):
CAACGGCTTATGTGCACTCCTACTCGCACATAGCCGGGTCAG
Found at i:9501819 original size:18 final size:18
Alignment explanation
Indices: 9501796--9501845 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
9501786 GGAGCAAAAA
*
9501796 AAGAAAGAGAAAGAGAAG
1 AAGAAAAAGAAAGAGAAG
9501814 AAGAAAAAGAAAGAGAA-
1 AAGAAAAAGAAAGAGAAG
* *
9501831 AAAAAAAAGAGAGAG
1 AAGAAAAAGAAAGAG
9501846 GAAGCACGGT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
17 13 0.45
18 16 0.55
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (18 bp):
AAGAAAAAGAAAGAGAAG
Found at i:9501832 original size:12 final size:12
Alignment explanation
Indices: 9501793--9501833 Score: 57
Period size: 12 Copynumber: 3.4 Consensus size: 12
9501783 GGGGGAGCAA
9501793 AAAAAGAAAGAG
1 AAAAAGAAAGAG
*
9501805 AAAGAG-AAGAAG
1 AAAAAGAAAG-AG
9501817 AAAAAGAAAGAG
1 AAAAAGAAAGAG
9501829 AAAAA
1 AAAAA
9501834 AAAAAGAGAG
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
11 3 0.12
12 19 0.76
13 3 0.12
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (12 bp):
AAAAAGAAAGAG
Found at i:9501935 original size:69 final size:68
Alignment explanation
Indices: 9501814--9502026 Score: 259
Period size: 69 Copynumber: 3.1 Consensus size: 68
9501804 GAAAGAGAAG
* * *
9501814 AAGAAAAAGAAAGAGAAAAAAAAAAGAGAGAGGAAGCACGGTGAC-GAGGAGAAGAAGGAGAGGG
1 AAGAGAAAGAAAGAGAAAAGAAAAAGAGAG-GGAA-CA--GTGACAGAGGAGAAGAAGGAGAAGG
*
9501878 AAGAAAT
62 AAGAAAA
* *
9501885 AAGAGAAAGAAAGAGAAGAAGAAAGAGAGAGGGAACAGTGACAGAGGAGAAGAAGGAGAAGAAAG
1 AAGAGAAAGAAAGAGAA-AAGAAAAAGAGAGGGAACAGTGACAGAGGAGAAGAAGGAGAAGGAAG
9501950 AAAGA
65 AAA-A
* ** *
9501955 AA-AGAAAGAAAGAGGAAAAGAAAAAGAGAGGGAGCAGCAACAGAGAAGAAGAAGGAGAAGGAAG
1 AAGAGAAAGAAAGA-GAAAAGAAAAAGAGAGGGAACAGTGACAGAGGAGAAGAAGGAGAAGGAAG
9502019 AAAA
65 AAAA
9502023 AAGA
1 AAGA
9502027 AAAAAAATAG
Statistics
Matches: 125, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
68 8 0.06
69 79 0.63
70 7 0.06
71 20 0.16
72 11 0.09
ACGTcount: A:0.60, C:0.04, G:0.35, T:0.01
Consensus pattern (68 bp):
AAGAGAAAGAAAGAGAAAAGAAAAAGAGAGGGAACAGTGACAGAGGAGAAGAAGGAGAAGGAAGA
AAA
Found at i:9501985 original size:16 final size:16
Alignment explanation
Indices: 9501943--9501977 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
9501933 GAAGAAGGAG
*
9501943 AAGAAAGAAAGAAAAGA
1 AAGAAAG-AGGAAAAGA
9501960 AAGAAAGAGGAAAAGA
1 AAGAAAGAGGAAAAGA
9501976 AA
1 AA
9501978 AAGAGAGGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (16 bp):
AAGAAAGAGGAAAAGA
Found at i:9502622 original size:60 final size:60
Alignment explanation
Indices: 9502526--9502674 Score: 226
Period size: 60 Copynumber: 2.5 Consensus size: 60
9502516 ATTTGATTGT
* * * * *
9502526 AAAGGGGGACCTGAAGCCTCGATTTATATTTGGTGACGTGGATAGTTTCCACGAGTAGGC
1 AAAGGGGGACCTAAAGCCCCGATTTATATTTAGTGACGTGGATAGTTCCCACAAGTAGGC
*
9502586 AAAGGGGGACCTAAAGCCCCGATTTATATTTAGTGACGTGGATAGTTCCCACAAGTAGGT
1 AAAGGGGGACCTAAAGCCCCGATTTATATTTAGTGACGTGGATAGTTCCCACAAGTAGGC
* *
9502646 AAAGGGGGGCCTAAAGCCCCGATTCATAT
1 AAAGGGGGACCTAAAGCCCCGATTTATAT
9502675 GGTGGCGTGG
Statistics
Matches: 81, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
60 81 1.00
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (60 bp):
AAAGGGGGACCTAAAGCCCCGATTTATATTTAGTGACGTGGATAGTTCCCACAAGTAGGC
Found at i:9504758 original size:171 final size:171
Alignment explanation
Indices: 9504263--9505420 Score: 1029
Period size: 171 Copynumber: 6.8 Consensus size: 171
9504253 GTGAAGTAAA
* *
9504263 AGTTACTCGCTTTAAATGGTTTTATAATATTATAAATGATTTTAAGTTGAATTTTTTTTTTATTT
1 AGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA-TTTTTTTTTATTT
* * * * *
9504328 TTGGTTAAAATAGATCATAATTTCATGTCTT-CATTGAGAAACATGGAGCGAAAGCCATCCATTG
65 TTGGATAAAATAGATCATAATTTGATGT-TTGCATTGGGAAACATGAAGCGAAAGCCACCCATTG
*** * *
9504392 ACAAGAAAAGTTTGTTTATAGTCACTCATGCCTTCAAAAGCTT
129 ACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCT
* * ** **
9504435 AGTTACTCACTTTAAGTGGTTTTATAA-CATTATAAATGATTTTAAATCAAATTTTTTTCAATTT
1 AGTTACTCACTTTAAATGGTTTTATAATC-TTATAAATGATTTTAAGTTGAATTTTTTTTTATTT
* * * ** *
9504499 TT--ATTAAAAAAGATCTTAATTTGATGTTTGCATTGGGAAACATAAAGTTAAAGCCA-TCATTT
65 TTGGA-TAAAATAGATCATAATTTGATGTTTGCATTGGGAAACATGAAGCGAAAGCCACCCA--T
*
9504561 TG-CAAGAAATGTCCATTTATAGTCACTCATGCCTTCGAAAGCCT
127 TGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCT
* * * * * * *
9504605 AGTTACTAACTTTAAATAGTTTTATAATCTTATAATTGTTTTTAAGTTGAATTGTTTTCTAGTTT
1 AGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTTATTTT
* * * * *** * *
9504670 TGGATAAAAAAGATCATAATTTGTTGTTTACCTTGGGAAGTGTGAAGCGAAAGCCACCCGTTGAT
66 TGGATAAAATAGATCATAATTTGATGTTTGCATTGGGAAACATGAAGCGAAAGCCACCCATTGAC
* * *
9504735 AAGAAAAGTCCATTTACAGTCACTCATTCCTTTCGAAAGTCT
131 AAGAAAAGTCCATTTATAGTCACTCATGCC-TTCGAAAGCCT
* * * * ** *
9504777 TGTAACTCGCTTTAAATGGTTTTATAAAT-TTAAAAATGA-TTTAAACTGAATTTCTTTTTCATT
1 AGTTACTCACTTTAAATGGTTTTAT-AATCTTATAAATGATTTTAAGTTGAATTT-TTTTTTATT
* * * ** *** *
9504840 TTT-CATTGAAATAGATTATAATTTGATGTTTGCATTGGGAAACATGAAGTTAAAGTTGCACATT
64 TTTGGA-TAAAATAGATCATAATTTGATGTTTGCATTGGGAAACATGAAGCGAAAGCCACCCATT
* * *
9504904 CATAATG-AAAGTCCATTTATAGTCACTCATGCCTGCGAAAGCCT
128 GACAA-GAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCT
* * * * * * *
9504948 TGTTACTCGCATTAAGT-ATTTTATAA-CTTTACAAATGATTTTAAATTG-A-TTTTTTTTATTT
1 AGTTACTCACTTTAAATGGTTTTATAATC-TTATAAATGATTTTAAGTTGAATTTTTTTTTATTT
* * * * *** * *
9505009 TAGGTTAAAATAGGTCATAATTTGATGTATGTC-TCAAGAAACATGAAGCGAAAGCGATCCATTG
65 TTGGATAAAATAGATCATAATTTGATGTTTG-CATTGGGAAACATGAAGCGAAAGCCACCCATTG
* * *
9505073 ATAAGAAAAGTCCATTTATAGTCACTTATGCC-TCTAAAAGCCT
129 ACAAGAAAAGTCCATTTATAGTCACTCATGCCTTC-GAAAGCCT
* * *
9505116 AGTTGCTCAATTTAAATGGTTTTATAATCTTACAAATGATTTTAAGTTGAATTTTTTTTTATTTT
1 AGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTTATTTT
* * * * * * * * * *
9505181 TGGCTAAAACATATCA-AAATTGAATTTTTACCTTAGGAAACATGAAGCGAAAGCCATCCATTAA
66 TGGATAAAATAGATCATAATTTG-ATGTTTGCATTGGGAAACATGAAGCGAAAGCCACCCATTGA
* * *
9505245 CAAAAAAAGTCCATTTATAGTCACTCATACCTTCGAAAGCCA
130 CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCT
* * * * *
9505287 AGTTACTCTCTTTAAATGGTTTTATAATCTCATAAATGATTATAAGTTGAATTTGTTTTCATTTT
1 AGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTTATTTT
* * * ** * * * * *
9505352 TGGTTAAAATAGACCA-AACATAAATGTTTGCCTTGGGAAACACGAAACAAAAGCCATCCATTGA
66 TGGATAAAATAGATCATAA-TTTGATGTTTGCATTGGGAAACATGAAGCGAAAGCCACCCATTGA
9505416 CAAGA
130 CAAGA
9505421 TGTCAAGCCC
Statistics
Matches: 791, Mismatches: 165, Indels: 61
0.78 0.16 0.06
Matches are distributed among these distances:
167 2 0.00
168 99 0.13
169 36 0.05
170 157 0.20
171 327 0.41
172 166 0.21
173 4 0.01
ACGTcount: A:0.34, C:0.13, G:0.14, T:0.38
Consensus pattern (171 bp):
AGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTTATTTT
TGGATAAAATAGATCATAATTTGATGTTTGCATTGGGAAACATGAAGCGAAAGCCACCCATTGAC
AAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCT
Found at i:9505340 original size:511 final size:509
Alignment explanation
Indices: 9504262--9505364 Score: 1210
Period size: 511 Copynumber: 2.2 Consensus size: 509
9504252 CGTGAAGTAA
*
9504262 AAGTTACTCGCTTTAAATGGTTTTATAATATTATAAATGATTTTAAGTTGAATTTTTTTTTTATT
1 AAGTTACTCGCTTTAAATGGTTTTATAAT-TTATAAATGA-TTTAAGTTGAA-TTTTTTTTCATT
** * *
9504327 TTTGGTTAAAATAGATCATAATTTCATGTCTTCATTGAGAAACATGGAGCGAAAGCCATCCATTG
63 TTTCATTAAAATAGATCATAATTTCATGTCTTCATTGAGAAACATGAAGCGAAAGCCA-CCATTC
*** * * *
9504392 ACAAGAAAAGTTTGTTTATAGTCACTCATGCCTTCAAAAGCTTAGTTACTCACTTTAAGTGGTTT
127 ACAAGAAAAGTCCATTTATAGTCACTCATGCCTGCAAAAGCTTAGTTACTCACATTAAGTGATTT
* *
9504457 TATAACATTATAAATGATTTTAAATCAAATTTTTTTCAATTTTTATTAAAAAAGATCTTAATTTG
192 TATAACATTACAAATGATTTTAAATCAAATTTTTTTCAATTTTTATTAAAAAAGATCATAATTTG
* *** ** *
9504522 ATGTTTGCATTGGGAAACATAAAGTTAAAGCCATCATTTTGCAAGAAATGTCCATTTATAGTCAC
257 ATGTATGCATCAAGAAACATAAAGCGAAAGCCATCA-TTTGCAAGAAAAGTCCATTTATAGTCAC
* * * *
9504587 TCATGCCTTCGAAAGCCTAGTTACTAACTTTAAATAGTTTTATAATCTTATAATTGTTTTTAAGT
321 TCATGCCTTCAAAAGCCTAGTTACTAACTTTAAATAGTTTTATAATCTTACAAATGATTTTAAGT
* * ***
9504652 TGAATTGTTTTCTAGTTTTGGATAAAAAAGATCATAATTTGTTGTTTACCTTGGGAAGTGTGAAG
386 TGAATTGTTTTCTAGTTTTGGATAAAAAAGATCATAAATTGTTGTTTACCTTAGGAAACATGAAG
* * * * * *
9504717 CGAAAGCCACCCGTTGATAAGAAAAGTCCATTTACAGTCACTCATTCCTTTCGAAAGTC
451 CGAAAGCCACCCATTAACAAAAAAAGTCCATTTACAGTCACTCATACCTTTCGAAAGCC
** * * **
9504776 TTGTAACTCGCTTTAAATGGTTTTATAAATTTAAAAATGATTTAAACTGAATTTCTTTTTCATTT
1 AAGTTACTCGCTTTAAATGGTTTTAT-AATTTATAAATGATTTAAGTTGAATTT-TTTTTCATTT
* * * * ** *
9504841 TTCATTGAAATAGATTATAATTTGATGT-TTGCATTGGGAAACATGAAGTTAAAGTTGCA-CATT
64 TTCATTAAAATAGATCATAATTTCATGTCTT-CATTGAGAAACATGAAGCGAAAG--CCACCATT
* * *
9504904 CATAATG-AAAGTCCATTTATAGTCACTCATGCCTGCGAAAGCCTT-GTTACTCGCATTAAGT-A
126 CACAA-GAAAAGTCCATTTATAGTCACTCATGCCTGCAAAAG-CTTAGTTACTCACATTAAGTGA
* ** * * *
9504966 TTTTATAACTTTACAAATGATTTTAAAT-TGATTTTTTT-TA-TTTTAGGTTAAAATAGGTCATA
189 TTTTATAACATTACAAATGATTTTAAATCAAATTTTTTTCAATTTTTA--TTAAAAAAGATCATA
* * *
9505028 ATTTGATGTATGTC-TCAAGAAACATGAAGCGAAAGCGATCCA-TTGATAAGAAAAGTCCATTTA
252 ATTTGATGTATG-CATCAAGAAACATAAAGCGAAAGCCAT-CATTTG-CAAGAAAAGTCCATTTA
* * *
9505091 TAGTCACTTATGCC-TCTAAAAGCCTAGTTGCTCAA-TTTAAATGGTTTTATAATCTTACAAATG
314 TAGTCACTCATGCCTTC-AAAAGCCTAGTTACT-AACTTTAAATAGTTTTATAATCTTACAAATG
* * * * * *
9505154 ATTTTAAGTTGAATTTTTTTTTATTTTTGGCTAAAACATATCA-AAATTGAATT-TTTACCTTAG
377 ATTTTAAGTTGAATTGTTTTCTAGTTTTGGATAAAAAAGATCATAAATTG--TTGTTTACCTTAG
* *
9505217 GAAACATGAAGCGAAAGCCATCCATTAACAAAAAAAGTCCATTTATAGTCACTCATACC-TTCGA
440 GAAACATGAAGCGAAAGCCACCCATTAACAAAAAAAGTCCATTTACAGTCACTCATACCTTTCGA
9505281 AAGCC
505 AAGCC
* * *
9505286 AAGTTACTCTCTTTAAATGGTTTTATAATCTCATAAATGATTATAAGTTGAATTTGTTTTCATTT
1 AAGTTACTCGCTTTAAATGGTTTTATAAT-TTATAAATGATT-TAAGTTGAATTTTTTTTCATTT
**
9505351 TTGGTTAAAATAGA
64 TTCATTAAAATAGA
9505365 CCAAACATAA
Statistics
Matches: 488, Mismatches: 83, Indels: 40
0.80 0.14 0.07
Matches are distributed among these distances:
509 8 0.02
510 72 0.15
511 219 0.45
512 38 0.08
513 110 0.23
514 36 0.07
515 5 0.01
ACGTcount: A:0.34, C:0.13, G:0.14, T:0.39
Consensus pattern (509 bp):
AAGTTACTCGCTTTAAATGGTTTTATAATTTATAAATGATTTAAGTTGAATTTTTTTTCATTTTT
CATTAAAATAGATCATAATTTCATGTCTTCATTGAGAAACATGAAGCGAAAGCCACCATTCACAA
GAAAAGTCCATTTATAGTCACTCATGCCTGCAAAAGCTTAGTTACTCACATTAAGTGATTTTATA
ACATTACAAATGATTTTAAATCAAATTTTTTTCAATTTTTATTAAAAAAGATCATAATTTGATGT
ATGCATCAAGAAACATAAAGCGAAAGCCATCATTTGCAAGAAAAGTCCATTTATAGTCACTCATG
CCTTCAAAAGCCTAGTTACTAACTTTAAATAGTTTTATAATCTTACAAATGATTTTAAGTTGAAT
TGTTTTCTAGTTTTGGATAAAAAAGATCATAAATTGTTGTTTACCTTAGGAAACATGAAGCGAAA
GCCACCCATTAACAAAAAAAGTCCATTTACAGTCACTCATACCTTTCGAAAGCC
Found at i:9509232 original size:171 final size:169
Alignment explanation
Indices: 9508738--9510237 Score: 1420
Period size: 171 Copynumber: 8.8 Consensus size: 169
9508728 TGGCATGAAA
* *
9508738 TCACTCATGCCTTCGAAAGCCTTGTTAGTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTT
1 TCACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGTTTTATAAT-TTATAAATGATTTT
* * * * * ** **
9508803 AAGTTAAATTTTTTTTTCATTTTTGGTTAAAATAGATCATAGTTAGATGTTCGCTTTAAGAAATG
65 AAGTTGAA--TTTTTTTCATTTTTGGTTAAAATAGATCATAATTGGATGTTTGCCTTGGGAAACA
* * * * * * *
9508868 CGAGGCAAAAGTCATTCACTGATAAGGAAAGTCCATTTATAG
128 TGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAG
* * * * * * *
9508910 TCACTCATGCCTTTGAGAGCCTTA-TTACTTGCTTTAAATGGTTTCACAATCTCATAAATGACTT
1 TCACTCATGCCTTCGAAAGCC-TAGTTACTCGCTTTAAATGGTTTTATAAT-TTATAAATGATTT
* *
9508974 TAAGTTGAATTTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGTTTGCCTTGGGAAAC
64 TAAGTTGAA--TTTTTTTCATTTTTGGTTAAAATAGATCATAATTGGATGTTTGCCTTGGGAAAC
* * *
9509039 GTGAAGTAAAAGCCATCCATTGACAAGAAAAGTCCATTTACAG
127 ATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAG
* * * * * *
9509082 TCACTCGTGCATTCGAAAGCCTAGTTCCTCACTTTAAATGGTTTTACAATTTGATTAATGATTTT
1 TCACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGTTTTATAATTT-ATAAATGATTTT
9509147 AAGTTGAATTGTTTGTTCA-TTTTGGTTAAAATAGATCATAATTGGATGTTTGCCTTGGGAAACA
65 AAGTTGAATT-TTT-TTCATTTTTGGTTAAAATAGATCATAATTGGATGTTTGCCTTGGGAAACA
* ** * * *
9509211 TAAAGTGAAAGCCACCCATTGAC-AGTTAAAGTCCATTTATGG
128 TGAAGCAAAAGCCATCCATTGACAAG-AAAAGTCCATTTATAG
** * * * * * * *
9509253 TCACTCATGCCTTC-AAATGAGTAGTTACTCACTTTAAATGGATTTAAAATCTAACAAATTATTG
1 TCACTCATGCCTTCGAAA-GCCTAGTTACTCGCTTTAAATGGTTTTATAAT-TTATAAATGATTT
* * * * **
9509317 TAAGTTGAATCTTTTTCTCATTCTTAGTTAAAATAGATCATAATTCGATGTCTGTGTATGGGAAA
64 TAAGTTGAAT-TTTTT-TCATTTTTGGTTAAAATAGATCATAATTGGATGTTTGCCT-TGGGAAA
*
9509382 CGTG--GCACGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAG
126 CATGAAGCA--AAAGCCATCCATTGACAAGAAAAGTCCATTTATAG
* * * *
9509426 TCACTCATGCCTTGGGAAGCCTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATATC
1 TCACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGTTTTATAAT-TTATAAATGATTTT
* * **
9509491 AAGTTGAATTTGTTTTCATTTTTGGTTAAAACAAATCATAATTGGATGTTTGCCTTGAAAAACAT
65 AAGTTGAATTT-TTTTCATTTTTGGTTAAAATAGATCATAATTGGATGTTTGCCTTGGGAAACAT
* * * *
9509556 TATGCAAAAGCCATCAATTGACAAGAAAAGTCCATTTATAA
129 GAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAG
* ** * *
9509597 TCACTTATGCCTTTAAAAGCTTTGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTT
1 TCACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGTTTTATAAT-TTATAAATGATTTT
* * * * * * *
9509662 CAGTTAAATTTTTTTACATATTTAGTTAAAACAAATCATAATTGGATG-TTGACCTTGGGAAACG
65 AAGTTGAATTTTTTT-CATTTTTGGTTAAAATAGATCATAATTGGATGTTTG-CCTTGGGAAACA
* *
9509726 TGAAGCGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAG
128 TGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAG
* * * *
9509768 TCCCTCATGCCTTCGAAAGCCTTGTTACTCGCATTAAATGATTTTATAATCTTATAAATGATTTT
1 TCACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGTTTTATAAT-TTATAAATGATTTT
* * ***
9509833 AAGTTGAA-TTTTTTCATTTTTGGTTAAAATAGATCATAGTTCGATGTTTGCCTCAAGAAACATG
65 AAGTTGAATTTTTTTCATTTTTGGTTAAAATAGATCATAATTGGATGTTTGCCTTGGGAAACATG
* * * *
9509897 AGGTAAAAGTCATCCATTGACAAGGAAAGTCCATTTATAG
130 AAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAG
* * * * * ** * *
9509937 TCACCCATGCCTTC-AGAAGTCTTGTCACTCGCTTTAAGTGACTTTGTAACTTTCTAAATGATTT
1 TCACTCATGCCTTCGA-AAGCCTAGTTACTCGCTTTAAATGGTTTTATAA-TTTATAAATGATTT
* * * * * * * * * ***
9510001 TAAATTAAATTTGCTTTAATATTT-CTCTAAAATTGATCGTAATTTGG-TGTTTGCATCAAGAAA
64 TAAGTTGAATTT-TTTTCATTTTTGGT-TAAAATAGATCATAA-TTGGATGTTTGCCTTGGGAAA
* * * * *
9510064 CATGAAGCGAAAGTCATCCATTGATAAGAAATGTCCATTTAAAG
126 CATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAG
* * * * * *
9510108 TCACTCATGCCTTCGGAAGCCAAGTTACTCACTTCAAATGGTTTTATAATCTCATAAACGATTTT
1 TCACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGTTTTATAAT-TTATAAATGATTTT
* * * * * * *
9510173 ACGTTGAATTTGTTTTCATTTTTGGTTAAGATAGACCAAAAATGGATGTTTTCCTTGGTAAACAT
65 AAGTTGAATTT-TTTTCATTTTTGGTTAAAATAGATCATAATTGGATGTTTGCCTTGGGAAACAT
9510238 TATTGGCTCC
Statistics
Matches: 1089, Mismatches: 207, Indels: 65
0.80 0.15 0.05
Matches are distributed among these distances:
168 1 0.00
169 128 0.12
170 32 0.03
171 548 0.50
172 273 0.25
173 103 0.09
174 4 0.00
ACGTcount: A:0.32, C:0.15, G:0.16, T:0.37
Consensus pattern (169 bp):
TCACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGTTTTATAATTTATAAATGATTTTA
AGTTGAATTTTTTTCATTTTTGGTTAAAATAGATCATAATTGGATGTTTGCCTTGGGAAACATGA
AGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAG
Found at i:9509417 original size:344 final size:332
Alignment explanation
Indices: 9508738--9510228 Score: 1418
Period size: 344 Copynumber: 4.4 Consensus size: 332
9508728 TGGCATGAAA
* *
9508738 TCACTCATGCCTTCGAAAGCCTTGTTAGTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTT
1 TCACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTT
* * * * * **
9508803 AAGTTAAATTTTTTTTTCATTTTTGGTTAAAATAGATCATAGTTAGATGTTCGCTTTAAGAAATG
66 AAGTTGAA--TTTTTTTCATTTTTGGTTAAAATAGATCATAATTGGATGTTTGCCTTAAGAAACA
* * * * * **
9508868 CGAGGCAAAAGTCATTCACTGATAAGGAAAGTCCATTTATAGTCACTCATGCCTT-TGAGAGCCT
129 TGAGGCAAAAGCCATCCATTGACAAGGAAAGTCCATTTATAGTCACTCATGCCTTCAAAGAG---
* * *
9508932 TA-TTACTTGCTTTAAATGGTTTCACAATCTCATAAATGACTTTAAGTTGAATTTTTTTTTCATT
191 TAGTTACTCGCTTTAAATGGTTT-AAAATCTAATAAATGA-TTTAAGTTGAA--TTTTTTTCA-T
* *
9508996 TTTGGTTAAAACAGATCATAATTGAATGTTTGCCTTGGGAAACGTGAAGTAAAAGCCATCCATTG
251 TTTAGTTAAAACAGATCATAATTG-ATG-TTGCCTTGGGAAACGTGACG--AAAGCCATCCATTG
*
9509061 ACAAGAAAAGTCCATTTACAG
312 ACAAGAAAAGTCCATTTATAG
* * * * * *
9509082 TCACTCGTGCATTCGAAAGCCTAGTTCCTCACTTTAAATGGTTTTACAAT-TTGATTAATGATTT
1 TCACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGTTTTATAATCTT-ATAAATGATTT
**
9509146 TAAGTTGAATTGTTTGTTCA-TTTTGGTTAAAATAGATCATAATTGGATGTTTGCCTTGGGAAAC
65 TAAGTTGAATT-TTT-TTCATTTTTGGTTAAAATAGATCATAATTGGATGTTTGCCTTAAGAAAC
* * ** * * *
9509210 ATAAAGTGAAAGCCACCCATTGAC-AGTTAAAGTCCATTTATGGTCACTCATGCCTTCAAATGAG
128 ATGAGGCAAAAGCCATCCATTGACAAG-GAAAGTCCATTTATAGTCACTCATGCCTTCAAA-GAG
* * *
9509274 TAGTTACTCACTTTAAATGGATTTAAAATCTAACAAATTATTGTAAGTTGAATCTTTTTCTCATT
191 TAGTTACTCGCTTTAAATGG-TTTAAAATCTAATAAATGATT-TAAGTTGAAT-TTTTT-TCATT
* **
9509339 CTTAGTTAAAATAGATCATAATTCGATGTCTGTGTATGGGAAACGTGGCACGAAAGCCATCCATT
252 -TTAGTTAAAACAGATCATAATT-GATGT-TGCCT-TGGGAAACGT-G-ACGAAAGCCATCCATT
9509404 GACAAGAAAAGTCCATTTATAG
311 GACAAGAAAAGTCCATTTATAG
* * * *
9509426 TCACTCATGCCTTGGGAAGCCTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATATC
1 TCACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTT
* *
9509491 AAGTTGAATTTGTTTTCATTTTTGGTTAAAACAAATCATAATTGGATGTTTGCCTTGAA-AAACA
66 AAGTTGAATTT-TTTTCATTTTTGGTTAAAATAGATCATAATTGGATGTTTGCCTT-AAGAAACA
* * * * * * *
9509555 TTATGCAAAAGCCATCAATTGACAAGAAAAGTCCATTTATAATCACTTATGCCTTTAAA-AGCTT
129 TGAGGCAAAAGCCATCCATTGACAAGGAAAGTCCATTTATAGTCACTCATGCCTTCAAAGAG--T
* * * * *
9509619 TGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTCAGTTAAATTTTTTTACATATT
192 AGTTACTCGCTTTAAATGG-TTTAAAATCTAATAAATGA-TTTAAGTTGAATTTTTTT-CAT-TT
*
9509684 TAGTTAAAACAAATCATAATTGGATGTTGACCTTGGGAAACGTGAAGCGAAAGCCATCCATTGAC
253 TAGTTAAAACAGATCATAATT-GATGTTG-CCTTGGGAAACGTG-A-CGAAAGCCATCCATTGAC
*
9509749 AAGAAAAGTCTATTTATAG
314 AAGAAAAGTCCATTTATAG
* * * *
9509768 TCCCTCATGCCTTCGAAAGCCTTGTTACTCGCATTAAATGATTTTATAATCTTATAAATGATTTT
1 TCACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTT
* * *
9509833 AAGTTGAA-TTTTTTCATTTTTGGTTAAAATAGATCATAGTTCGATGTTTGCCTCAAGAAACATG
66 AAGTTGAATTTTTTTCATTTTTGGTTAAAATAGATCATAATTGGATGTTTGCCTTAAGAAACATG
* * * ** *
9509897 AGGTAAAAGTCATCCATTGACAAGGAAAGTCCATTTATAGTCACCCATGCCTTCAGAAGTCTTGT
131 AGGCAAAAGCCATCCATTGACAAGGAAAGTCCATTTATAGTCACTCATGCCTTCA-AAGAGTAGT
* * * ** ** * * * *
9509962 CACTCGCTTTAAGTGACTTTGTAA-CTTTCTAAATGATTTTAAATTAAATTTGCTTTAATATTT-
195 TACTCGCTTTAAATG-GTTTAAAATC-TAATAAATGA-TTTAAGTTGAATTT-TTTTCAT-TTTA
* ** * * * *** * * *
9510025 CTCTAAAATTGATCGTAATTTGGTGTTTGCATCAAGAAACATGAAGCGAAAGTCATCCATTGATA
255 GT-TAAAACAGATCATAA-TTGATG-TTGCCTTGGGAAACGTG-A-CGAAAGCCATCCATTGACA
* *
9510090 AGAAATGTCCATTTAAAG
315 AGAAAAGTCCATTTATAG
* * * * * *
9510108 TCACTCATGCCTTCGGAAGCCAAGTTACTCACTTCAAATGGTTTTATAATCTCATAAACGATTTT
1 TCACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTT
* * * * * *
9510173 ACGTTGAATTTGTTTTCATTTTTGGTTAAGATAGACCAAAAATGGATGTTTTCCTT
66 AAGTTGAATTT-TTTTCATTTTTGGTTAAAATAGATCATAATTGGATGTTTGCCTT
9510229 GGTAAACATT
Statistics
Matches: 954, Mismatches: 153, Indels: 82
0.80 0.13 0.07
Matches are distributed among these distances:
339 4 0.00
340 262 0.27
341 17 0.02
342 168 0.18
343 186 0.19
344 305 0.32
345 10 0.01
346 2 0.00
ACGTcount: A:0.32, C:0.15, G:0.16, T:0.37
Consensus pattern (332 bp):
TCACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTT
AAGTTGAATTTTTTTCATTTTTGGTTAAAATAGATCATAATTGGATGTTTGCCTTAAGAAACATG
AGGCAAAAGCCATCCATTGACAAGGAAAGTCCATTTATAGTCACTCATGCCTTCAAAGAGTAGTT
ACTCGCTTTAAATGGTTTAAAATCTAATAAATGATTTAAGTTGAATTTTTTTCATTTTAGTTAAA
ACAGATCATAATTGATGTTGCCTTGGGAAACGTGACGAAAGCCATCCATTGACAAGAAAAGTCCA
TTTATAG
Found at i:9509567 original size:515 final size:505
Alignment explanation
Indices: 9508738--9510237 Score: 1440
Period size: 515 Copynumber: 2.9 Consensus size: 505
9508728 TGGCATGAAA
* * * * * * * * * *
9508738 TCACTCATGCCTTCGAAAGCCTTGTTAGTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTT
1 TCACTCATGCCTTCGAAAGACTAGTTACTCACATTAAATGATTTTAAAATCTAACAAATGATTGT
* * * * * * * * **
9508803 AAGTTAAATTTTTTTTTCATTTTTGGTTAAAATAGATCATAGTTAGATGTTCGCTTTAAGAAATG
66 AAGTTGAA---TTTTTTCATTCTTAGTTAAAATAGATCATAATTCGATGTTTGCATCAAGAAACA
* * * * * * * *
9508868 CGAGGCAAAAGTCATTCACTGATAAGGAAAGTCCATTTATAGTCACTCATGCCTTTGAGAGCCTT
128 TGACG-AAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTAGA-AGCC-T
* * * * *
9508933 A-TTACTTGCTTTAAATGGTTTCACAATCTCATAAATGACTTTAAGTTGAATTTTTTTTTCATTT
190 AGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGA-TTTAAGTTGAA-TTTGTTTTCATTT
* ** * *
9508997 TTGGTTAAAACAGATCATAATTGAATGTTTGCCTTGGGAAACGTGAAGTAAAAGCCATCCATTGA
253 TTGGTTAAAACAGATCATAATTGGATGTTTGCCTTGAAAAACATGAAGCAAAAGCCATCCATTGA
* * * *
9509062 CAAGAAAAGTCCATTTACAGTCACTCGTGCATTCGAAAGCCTAGTTCCTCACTTTAAATGGTTTT
318 CAAGAAAAGTCCATTTAAAGTCACTCATGCCTTCGAAAGCCTAGTTACTCACTTTAAATGGTTTT
* *
9509127 ACAATTTGATTAATGATTTTAAGTTGAATTGTTTGTTCATTTTGGTTAAAATAGATCATAATTGG
383 ATAATTT-ATAAATGATTTTAAGTTGAATT-TTT-TTCATTTTGGTTAAAATAGATCATAATTGG
* * *
9509192 ATGTTTGCCTTGGGAAACATAAAGTGAAAGCCACCCATTGAC-AGTTAAAGTCCATTTATGG
445 ATGTTTGCCTTGGGAAACATAAAGCGAAAGCCACCCATTGACAAG-AAAAGTCCATTTATAG
* * *
9509253 TCACTCATGCCTTC-AAATGAGTAGTTACTCACTTTAAATGGA-TTTAAAATCTAACAAATTATT
1 TCACTCATGCCTTCGAAA-GACTAGTTACTCACATTAAAT-GATTTTAAAATCTAACAAATGATT
* **
9509316 GTAAGTTGAATCTTTTTCTCATTCTTAGTTAAAATAGATCATAATTCGATGTCTGTGTAT-GGGA
64 GTAAGTTGAA--TTTTT-TCATTCTTAGTTAAAATAGATCATAATTCGATGT-T-TGCATCAAGA
* *
9509380 AACGTGGCACG-AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTGGGAA
124 AACAT-G-ACGAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTT-AGAA
*
9509444 GCCTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATATCAAGTTGAATTTGTTTTCA
186 GCCTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGAT-TTAAGTTGAATTTGTTTTCA
* * * *
9509509 TTTTTGGTTAAAACAAATCATAATTGGATGTTTGCCTTGAAAAACATTATGCAAAAGCCATCAAT
250 TTTTTGGTTAAAACAGATCATAATTGGATGTTTGCCTTGAAAAACATGAAGCAAAAGCCATCCAT
* ** * * *
9509574 TGACAAGAAAAGTCCATTTATAA-TCACTTATGCCTTTAAAAGCTTTGTTACTCGCTTTAAATGG
315 TGACAAGAAAAGTCCATTTA-AAGTCACTCATGCCTTCGAAAGCCTAGTTACTCACTTTAAATGG
* * * * *
9509638 TTTTATAATCTTATAAATGATTTTCAGTTAAATTTTTTTACATATTTAGTTAAAACAAATCATAA
379 TTTTATAAT-TTATAAATGATTTTAAGTTGAATTTTTTT-CAT-TTTGGTTAAAATAGATCATAA
* * * *
9509703 TTGGATG-TTGACCTTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCTATTTATA
441 TTGGATGTTTG-CCTTGGGAAACATAAAGCGAAAGCCACCCATTGACAAGAAAAGTCCATTTATA
9509767 G
505 G
* * * * * * * *
9509768 TCCCTCATGCCTTCGAAAGCCTTGTTACTCGCATTAAATGATTTTATAATCTTATAAATGATTTT
1 TCACTCATGCCTTCGAAAGACTAGTTACTCACATTAAATGATTTTAAAATCTAACAAATGATTGT
* * * *
9509833 AAGTTGAATTTTTTCATTTTTGGTTAAAATAGATCATAGTTCGATGTTTGCCTCAAGAAACATGA
66 AAGTTGAATTTTTTCATTCTTAGTTAAAATAGATCATAATTCGATGTTTGCATCAAGAAACATGA
* * * * * * *
9509898 GGTAAAAGTCATCCATTGACAAGGAAAGTCCATTTATAGTCACCCATGCCTTCAGAAGTCTTGTC
131 CG-AAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTT-AGAAGCCTAGTT
* ** * * * * * * * *
9509963 ACTCGCTTTAAGTGACTTTGTAA-CTTTCTAAATGATTTTAAATTAAATTTGCTTTAATATTT-C
194 ACTCGCTTTAAATGGTTTTATAATC-TTATAAATGA-TTTAAGTTGAATTTGTTTTCATTTTTGG
** * * * * * *
9510026 TCTAAAATTGATCGTAATTTGG-TGTTTG-CATCAAGAAACATGAAGCGAAAGTCATCCATTGAT
257 T-TAAAACAGATCATAA-TTGGATGTTTGCCTTGAA-AAACATGAAGCAAAAGCCATCCATTGAC
* * * *
9510089 AAGAAATGTCCATTTAAAGTCACTCATGCCTTCGGAAGCCAAGTTACTCACTTCAAATGGTTTTA
319 AAGAAAAGTCCATTTAAAGTCACTCATGCCTTCGAAAGCCTAGTTACTCACTTTAAATGGTTTTA
* * * * * * *
9510154 TAATCTCATAAACGATTTTACGTTGAATTTGTTTTCATTTTTGGTTAAGATAGACCAAAAATGGA
384 TAAT-TTATAAATGATTTTAAGTTGAATTT-TTTTCA-TTTTGGTTAAAATAGATCATAATTGGA
* *
9510219 TGTTTTCCTTGGTAAACAT
446 TGTTTGCCTTGGGAAACAT
9510238 TATTGGCTCC
Statistics
Matches: 808, Mismatches: 147, Indels: 64
0.79 0.14 0.06
Matches are distributed among these distances:
509 2 0.00
510 12 0.01
511 257 0.32
512 43 0.05
513 7 0.01
514 20 0.02
515 356 0.44
516 104 0.13
517 5 0.01
518 2 0.00
ACGTcount: A:0.32, C:0.15, G:0.16, T:0.37
Consensus pattern (505 bp):
TCACTCATGCCTTCGAAAGACTAGTTACTCACATTAAATGATTTTAAAATCTAACAAATGATTGT
AAGTTGAATTTTTTCATTCTTAGTTAAAATAGATCATAATTCGATGTTTGCATCAAGAAACATGA
CGAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTAGAAGCCTAGTTAC
TCGCTTTAAATGGTTTTATAATCTTATAAATGATTTAAGTTGAATTTGTTTTCATTTTTGGTTAA
AACAGATCATAATTGGATGTTTGCCTTGAAAAACATGAAGCAAAAGCCATCCATTGACAAGAAAA
GTCCATTTAAAGTCACTCATGCCTTCGAAAGCCTAGTTACTCACTTTAAATGGTTTTATAATTTA
TAAATGATTTTAAGTTGAATTTTTTTCATTTTGGTTAAAATAGATCATAATTGGATGTTTGCCTT
GGGAAACATAAAGCGAAAGCCACCCATTGACAAGAAAAGTCCATTTATAG
Found at i:9511680 original size:170 final size:170
Alignment explanation
Indices: 9511328--9512775 Score: 1317
Period size: 170 Copynumber: 8.5 Consensus size: 170
9511318 CAAACGTAAT
* * * *
9511328 GCAAAAGTCC-TCGATTGACAGGAAAAGTCTATTTTATAGTTACTCATGCCTTCCA-AAGCCTTG
1 GCAAAAG-CCATCCATTGACAAGAAAAGTCCA-TTTATAGTCACTCATGCCTT-CAGAAGCCTTG
* *
9511391 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTGAAGTTGAATTTATTTTCA-TTTTG
63 TTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTT-TTTTCATTTTTG
** * *
9511455 TGTTAAAACAGATTGTAATTTGATGTTTGCA-CTGGGAAACATGAC
127 -GTTAAAACAGATCATAATTTGATGTTTGCATC-AGGAAACATGAA
* * * *
9511500 GCAAAAGCCATCCATTGACAAGAAAAGTCTATTTATGGTCATTCATGGCTTCAGAAGCCTTGTTA
1 GCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAGAAGCCTTGTTA
* * ** * *
9511565 CTCACTTTAAGTGGTTTTATAA-CTTTATAAATGATTTTAAATTGACCTTTGTTCATTTTAGGTT
66 CTCACTTTAAATGGTTTTATAATC-TTATAAATGATTTTAAGTTGAATTTTTTTCATTTTTGGTT
* * *
9511629 AAAAGAGATCATAATTTGATGTTGGCATCAGGAAACGTGAA
130 AAAACAGATCATAATTTGATGTTTGCATCAGGAAACATGAA
* * * * *
9511670 GCAAAAGCCATCCATTGATAA-AGAAAGTCAATTTATAGTCACTCATACATTC-GAAAGCCTTCT
1 GCAAAAGCCATCCATTGACAAGA-AAAGTCCATTTATAGTCACTCATGCCTTCAG-AAGCCTTGT
** *
9511733 TACTCACTTTAAATTATTTTATAA-CTTTATAAAATGATTTT-AGATTGAAATTTTTTCA-TTTT
64 TACTCACTTTAAATGGTTTTATAATC-TTAT-AAATGATTTTAAG-TTGAATTTTTTTCATTTTT
* * * * * ** *
9511795 GATTAAAATAGGTCGTAACTTGATGTTTGCATTGGGAAACGTGAA
126 GGTTAAAACAGATCATAATTTGATGTTTGCATCAGGAAACATGAA
* * * * * * * *
9511840 GCAAAAGCTATTCATTGACAAGAAACGTCCATTTATATTCACTTATGCCTTTAAAAGCCTAGTTA
1 GCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAGAAGCCTTGTTA
* *
9511905 CTCAC-TTAAATGGTTTTATAATCTCATAAATGATTATAAGTTGAATTTGTTTTCATTTTTGGTT
66 CTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTT-TTTTCATTTTTGGTT
* * * *
9511969 AAACCATATCATAATTGGATGTTTGC-TTAGGAAACATGAA
130 AAAACAGATCATAATTTGATGTTTGCATCAGGAAACATGAA
* *
9512009 GCAAAAGTCATCCATTGACAAGAAAAGTCCATTTATAGTCAC-CTATGCCTTCCA-AAGCCTTAT
1 GCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTC-ATGCCTT-CAGAAGCCTTGT
* * * **
9512072 TACTCGCTTTAAATGGTTTTATAAAT-TTAAAAATG-TTTTCAGATTGAATTTTTTTTTGTTTTT
64 TACTCACTTTAAATGGTTTTAT-AATCTTATAAATGATTTTAAG-TTGAA-TTTTTTTCATTTTT
** ** * * * ***
9512135 CATTAAAAGGGATCGTAATTGGATGTTTGCA-CTGGCAATTGTGAA
126 GGTTAAAACAGATCATAATTTGATGTTTGCATCAGG-AAACATGAA
** * * * * * * *
9512180 GCAAAAGCCATTTATTGACAAGAAACGTCCATTTGTTGTCACTCTTGCCTT-TGAAACCTTAATT
1 GCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAGAAGCCTT-GTT
* * *
9512244 ACTCACTTTAAATGGTTTTATAATCGTATAAATGATTTGAAGTTGAATTTCTTTTCATTTTTGGA
65 ACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTT-TTTTCATTTTTGGT
* * * **
9512309 TAAAACAGATTATAATTGGATGTTCGC-TTGGGAAACATGAA
129 TAAAACAGATCATAATTTGATGTTTGCATCAGGAAACATGAA
* * * * *
9512350 GCAAAAGCCATCTATTGGCATA-AAAAGTCTATTTATAATCACTCATGTCTTC-GAAAGCCTTGT
1 GCAAAAGCCATCCATTGACA-AGAAAAGTCCATTTATAGTCACTCATGCCTTCAG-AAGCCTTGT
**
9512413 TACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTCATTTTCAG
64 TACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA-TTTTTTTCATTTTTGG
* * * * * * * **
9512478 TTCAAATAAATCTTAATTAGATGTTTGCCTCAAGAAACATGTG
128 TTAAAACAGATCATAATTTGATGTTTGCATCAGGAAACATGAA
* * * * ** * *
9512521 GCATAAGTCATTCACTGATGAGAAAAGTCCATTTATAGTCACTCATGCCTT-TGAGAGCCTTATT
1 GCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAGA-AGCCTTGTT
** * * * * *
9512585 ACTTGCTTTAAATAGTTTCACAATCTCATAAATGATTTTAAGTTGATTTTTTTTTCATTTTTGGT
65 ACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGA-ATTTTTTTCATTTTTGGT
* * * *
9512650 TAAAACAGATCATAA-TTGTACGTTTGCCTCAAGAAATATGAA
129 TAAAACAGATCATAATTTG-ATGTTTGCATCAGGAAACATGAA
* * * * *
9512692 GCGAAACCCATCCATTAACAAGAAAAGTCCATTTA-CGATCACTCATGCCTTC-GAAAGCCTAGT
1 GCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAG-TCACTCATGCCTTCAG-AAGCCTTGT
9512755 TACTCACTTTAAATGGTTTTA
64 TACTCACTTTAAATGGTTTTA
9512776 GTTAAAGTTT
Statistics
Matches: 1029, Mismatches: 204, Indels: 87
0.78 0.15 0.07
Matches are distributed among these distances:
168 16 0.02
169 101 0.10
170 446 0.43
171 433 0.42
172 33 0.03
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.38
Consensus pattern (170 bp):
GCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAGAAGCCTTGTTA
CTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTCATTTTTGGTTA
AAACAGATCATAATTTGATGTTTGCATCAGGAAACATGAA
Found at i:9511982 original size:340 final size:337
Alignment explanation
Indices: 9511319--9521206 Score: 5983
Period size: 341 Copynumber: 29.2 Consensus size: 337
9511309 TGGGACCAAC
* * * * * *
9511319 AAACGT-AATGCAAAAGTCC-TCGATTGACAGGAAAAGTCTATTTTATAGTTACTCATGCCTTCC
1 AAACGTGAA-GCAAAAG-CCATCCATTGAAAAGAAAAGTCCA-TTTATAGTCACTCATGCCTTCG
*
9511382 AAAGCCTTGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTGAAGTTGAATTTATTT
63 AAAGCCTTGTTACTCGCTTTAAATGGTTTTATAAT-TTATAAATGATTTTAA-TTGAATTT-TTT
** * * ** * *
9511447 TCATTTTGTGTTAAAACAGATTGTAATTTGATGTTTGCACTGGGAAACATGACGCAAAAGCCATC
125 TCATTTTG-GTTAAAACAGATCATAATTGGATGTTTGCATTAAGAAACATGAAGCAAAAGCCATT
* * * * * * *
9511512 CATTGACAAGAAAAGTCTATTTATGGTCATTCATGGC-TTCAGAAGCCTTGTTACTCACTTTAAG
189 CATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGA-AAGCCTAGTTACTCACTTTAAA
* * * * *
9511576 TGGTTTTATAA-CTTTATAAATGATTTTAAATTGACCTTTG--TTCATTTTAGGTTAAAAGAGAT
253 TGGTTTTATAATC-TTATAAATGATTTTAAGTTGA-ATTTGTTTTCATTTTTGGTTAAAACATAT
* *
9511638 CATAATTTGATGTTGGCATCAGG
316 CATAATTGGATGTTTGC-TCAGG
* * *
9511661 AAACGTGAAGCAAAAGCCATCCATTGATAAAG-AAAGTCAATTTATAGTCACTCATACATTCGAA
1 AAACGTGAAGCAAAAGCCATCCATTGA-AAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAA
* * ** *
9511725 AGCCTTCTTACTCACTTTAAATTATTTTATAACTTTATAAAATGATTTTAGATTGAAATTTTTTC
65 AGCCTTGTTACTCGCTTTAAATGGTTTTATAA-TTTAT-AAATGATTTTA-ATTGAATTTTTTTC
* * * * ** * *
9511790 ATTTTGATTAAAATAGGTCGTAACTT-GATGTTTGCATTGGGAAACGTGAAGCAAAAGCTATTCA
127 ATTTTGGTTAAAACAGATCATAA-TTGGATGTTTGCATTAAGAAACATGAAGCAAAAGCCATTCA
* * * *
9511854 TTGACAAGAAACGTCCATTTATATTCACTTATGCCTTTAAAAGCCTAGTTACTCAC-TTAAATGG
191 TTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTAGTTACTCACTTTAAATGG
* * *
9511918 TTTTATAATCTCATAAATGATTATAAGTTGAATTTGTTTTCATTTTTGGTTAAACCATATCATAA
256 TTTTATAATCTTATAAATGATTTTAAGTTGAATTTGTTTTCATTTTTGGTTAAAACATATCATAA
*
9511983 TTGGATGTTTGCTTAGG
321 TTGGATGTTTGCTCAGG
* * * *
9512000 AAACATGAAGCAAAAGTCATCCATTGACAAGAAAAGTCCATTTATAGTCAC-CTATGCCTTCCAA
1 AAACGTGAAGCAAAAGCCATCCATTGAAAAGAAAAGTCCATTTATAGTCACTC-ATGCCTTCGAA
* *
9512064 AGCCTTATTACTCGCTTTAAATGGTTTTATAAATTTAAAAATG-TTTTCAGATTGAATTTTTTTT
65 AGCCTTGTTACTCGCTTTAAATGGTTTTAT-AATTTATAAATGATTTT-A-ATTGAA--TTTTTT
** ** ** * * * ***
9512128 TGTTTTTCATTAAAAGGGATCGTAATTGGATGTTTGCACT-GGCAATTGTGAAGCAAAAGCCATT
125 TCATTTTGGTTAAAACAGATCATAATTGGATGTTTGCATTAAG-AAACATGAAGCAAAAGCCATT
* * * * * *
9512192 TATTGACAAGAAACGTCCATTTGTTGTCACTCTTGCCTTTGAAA-CCTTAATTACTCACTTTAAA
189 CATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCC-TAGTTACTCACTTTAAA
* * * * * *
9512256 TGGTTTTATAATCGTATAAATGATTTGAAGTTGAATTTCTTTTCATTTTTGGATAAAACAGATTA
253 TGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTGTTTTCATTTTTGGTTAAAACATATCA
* **
9512321 TAATTGGATGTTCGCTTGGG
318 TAATTGGATGTTTGCTCAGG
* * * * * * *
9512341 AAACATGAAGCAAAAGCCATCTATTGGCATA-AAAAGTCTATTTATAATCACTCATGTCTTCGAA
1 AAACGTGAAGCAAAAGCCATCCATT-GAAAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAA
*
9512405 AGCCTTGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTC
65 AGCCTTGTTACTCGCTTTAAATGGTTTTATAAT-TTATAAATGATTTTAA-TTGAA-TTTTTTTC
* * * * * * * * ** * *
9512470 ATTTTCAGTTCAAATAAATCTTAATTAGATGTTTGCCTCAAGAAACATGTGGCATAAGTCATTCA
127 ATTTT-GGTTAAAACAGATCATAATTGGATGTTTGCATTAAGAAACATGAAGCAAAAGCCATTCA
* ** * ** *
9512535 CTGATGAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAGAGCCTTA-TTACTTGCTTTAAATA
191 TTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCC-TAGTTACTCACTTTAAATG
* * * * * *
9512599 GTTTCACAATCTCATAAATGATTTTAAGTTGATTTTTTTTTCATTTTTGGTTAAAACAGATCATA
255 GTTTTATAATCTTATAAATGATTTTAAGTTGAATTTGTTTTCATTTTTGGTTAAAACATATCATA
* * *
9512664 ATTGTACGTTTGCCTCAAG
320 ATTGGATGTTTG-CTCAGG
** * * *
9512683 AAATATGAAGCGAAACCCATCCATT-AACAAGAAAAGTCCATTTA-CGATCACTCATGCCTTCGA
1 AAACGTGAAGCAAAAGCCATCCATTGAA-AAGAAAAGTCCATTTATAG-TCACTCATGCCTTCGA
* * * *
9512746 AAGCCTAGTTACTCACTTTAAATGG-TTT-T-A-GT-TAAA-G--TTT--TTG----TTTAT--T
64 AAGCCTTGTTACTCGCTTTAAATGGTTTTATAATTTATAAATGATTTTAATTGAATTTTTTTCAT
* * * ** **
9512795 TTTGGCTAAAATAGATCATAATTGGATGTTTGTC-TTAAAAAACATGAAGTGAAAGCCACCCATT
129 TTTGGTTAAAACAGATCATAATTGGATGTTTG-CATTAAGAAACATGAAGCAAAAGCCATTCATT
** * * *
9512859 GACAATTAAAGTCCATTTATAGCCACTCATGCCTTCGAAAGCCTAGTTACTCACTTTAAATGGGT
193 GACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTAGTTACTCACTTTAAATGGTT
* * * * *
9512924 ATATAATCTTATAAATTATTTTAAGTTGAATCTTTTTTTCATTCTTGGTTAAAACTTATCATAAT
258 TTATAATCTTATAAATGATTTTAAGTTGAAT-TTGTTTTCATTTTTGGTTAAAACATATCATAAT
* * *
9512989 TGGATGTCTGTTTAGG
322 TGGATGTTTGCTCAGG
* * * * * *
9513005 AAAATGTGAAGCGAAAGCCATACATTGACAAGAAAAGTCCATTTATAATCACTCATG-CTTGGGA
1 -AAACGTGAAGCAAAAGCCATCCATTGAAAAGAAAAGTCCATTTATAGTCACTCATGCCTT-CGA
* * * *
9513069 AAACCTAGTTACTTGCTTTAAATGGTTTTATAACCTTATAAATGATTTTAAGTTGAATTTGTTTT
64 AAGCCTTGTTACTCGCTTTAAATGGTTTTATAA-TTTATAAATGATTTTAA-TTGAATTT-TTTT
* * * * * * * **
9513134 CAATTTTGGTTAAACCAGATCATAATTGGGTGTTTGTC-TGAAAAAACGTGATGTAAAAGTTA-T
126 C-ATTTTGGTTAAAACAGATCATAATTGGATGTTTG-CATTAAGAAACATGAAGCAAAAGCCATT
* * * * * * * * *
9513197 CAATTGGCAAGAAAAGT-CAATTATTGTAACTTATGCCTTTGAAAGTCTTGTTAC-AAGGTTTAA
189 C-ATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTAGTTACTCA-CTTTAA
* * * ** *
9513260 ATGGTTTTATAATCTTCTAAATGATTTTAAGTTGAATTT-TTTTTAGTTTTAATTTAAACATATC
252 ATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTGTTTTCATTTTTGGTTAAAACATATC
*
9513324 ATACTTGGATGTTTGACTCTA-G
317 ATAATTGGATGTTTG-CTC-AGG
* * * * *
9513346 AAACTTGAGGCAAAAGTCATCCATT-AACAAGGAAAGTCCATTTATTGTCACTCATGCCTTC-AA
1 AAACGTGAAGCAAAAGCCATCCATTGAA-AAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAA
* *
9513409 GAGCCTTGTTACTCGCTTTAAATGG-TTTATAATATCATAGATGATTTTAAGTTGAATTTTTCTT
65 -AGCCTTGTTACTCGCTTTAAATGGTTTTATAAT-TTATAAATGATTTTAA-TTGAATTTTT-TT
* * * ** * ** * *
9513473 -ATTTTTGGTTAAAACATATCATAATTGTATGTTTGCCA-CAAGAAATGTGTAGTGAAAGCTATC
126 CA-TTTTGGTTAAAACAGATCATAATTGGATGTTTG-CATTAAGAAACATGAAGCAAAAGCCATT
* * ** * *
9513536 CATTGACAAGAAAAGCCCATTTATTGTCACTCATGCCGATGAAAGTCTTA-TTACTCGCTTTAAA
189 CATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAG-CCTAGTTACTCACTTTAAA
* ** ** * *
9513600 TAGTTTTATAATCTTATTTATGATTTTAAGTCAAATTT-TTTTCATTTTT-CTTAAAACATGTCA
253 TGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTGTTTTCATTTTTGGTTAAAACATATCA
* *
9513663 TAATTTGATGTTTGCAT-TGAG
318 TAATTGGATGTTTGC-TCAG-G
* * * * * * **
9513684 AAATGTCAAGCGAAAGCCATCCATTGATAAGAAAAGTCTATTTATAGTTACTCATGCCTTTAAAA
1 AAACGTGAAGCAAAAGCCATCCATTGAAAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAA
* * * *
9513749 GCCTTGTTACTTGCTTTAAGTGGTTTTA-ACTTTATAAATGATTTTAAATTGAATTTCTTTTTGA
66 GCCTTGTTACTCGCTTTAAATGGTTTTATAATTTATAAATGATTTT-AATTGAA-TT-TTTTTCA
* * * * * ** * *
9513813 TTTTAGGTTAAAACATATCATAATTTGATGTTTGTC-TCAGGAAACATAAAGTGAAACCCATGCA
128 TTTT-GGTTAAAACAGATCATAATTGGATGTTTG-CATTAAGAAACATGAAGCAAAAGCCATTCA
* * * * * *
9513877 TTGACAAGAAAAGTTCATTTATAGTCACCCATGCCCTTAAAAGCCTAGTAACTCACTTTAAATTG
191 TTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTAGTTACTCACTTTAAATGG
* * **
9513942 TTTTATAATCTTATAAATGATTTTAAGTTGAA-TTGTTTTTCATTTTTGATTGAAACATATTTTA
256 TTTTATAATCTTATAAATGATTTTAAGTTGAATTTG-TTTTCATTTTTGGTTAAAACATATCATA
* *
9514006 ATT-GAGTGCTTTTCT-TGG
320 ATTGGA-TG-TTTGCTCAGG
* * * * * * * *
9514024 TAACGTGAAGCGAAGGCGATCCACT-AACAAGAAAAGTCCCTTTATAGTCAATTATGCCTTCGAA
1 AAACGTGAAGCAAAAGCCATCCATTGAA-AAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAA
* * * * *
9514088 AGCTTTATTACTCGCTTTAAGTGATTTTATAACTCTATAAATGATTTTAAATTGAATTTTTTTCA
65 AGCCTTGTTACTCGCTTTAAATGGTTTTATAA-TTTATAAATGATTTT-AATTGAATTTTTTTCA
** * * * * * * * * *
9514153 TTTTTCTAAAAAGCATATCGTAATTTGA-GGTT-CATAGTGAGAAACGTGAAGCAAAATCCATCC
128 TTTTGGTTAAAA-CAGATCATAATTGGATGTTTGCAT--TAAGAAACATGAAGCAAAAGCCATTC
* * * * ** * *
9514216 ATTAACAAACAAAAGTTCATTTATA---A---ATG-GTTT-AAATGGTTAGGTACTC-GTTGTAA
190 ATTGAC-AAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAA-GCCTAGTTACTCACTT-TAA
** * *
9514272 AT-AATTTATAATCTTATAAATGCTTTTAAGTTGAATTT-TTTTCATTTTTGATTAAAACATATC
252 ATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTGTTTTCATTTTTGGTTAAAACATATC
* * *
9514335 ATAGTTAGATGTTTACCTC-GAG
317 ATAATTGGATGTTT-GCTCAG-G
* * * * ** *
9514357 AAACGTGTAGCGAAAGCCATCCATTTACAAGAAAAGTCCATTTATAGTCGTTCATGCTTTCGAAA
1 AAACGTGAAGCAAAAGCCATCCATTGAAAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAA
* * * * * * * *
9514422 GCTTTGTTACACGCTTTAAGTAGTTTAATAACTTTATAAGTGGTTTTAAATTGAATTTGTTTCAT
66 GCCTTGTTACTCGCTTTAAATGGTTTTATAA-TTTATAAATGATTTT-AATTGAATTTTTTTCAT
** * * * * *
9514487 TTCAAGTTAAAACAGATCATAATTTGATGTTCAG-ATCAAGAAACATGAAGCCAAAGCCATTCGT
129 TT-TGGTTAAAACAGATCATAATTGGATGTT-TGCATTAAGAAACATGAAGCAAAAGCCATTCAT
* * *
9514551 T-----TAAAAG-CC--TTAT--T-ACTC--G-CTTT--AAG--TGGTTTTA-TAACTTTATAA-
192 TGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTAG--TTACTCACTTTA-AAT
* * **
9514596 ------ATAAT-TT-T-AA--------A-TTGATTTTGTTCTCATTTTTCATTAAAACATATCAT
254 GGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTGTTTTCATTTTTGGTTAAAACATATCAT
* *
9514643 AATTTGATGTTTGCATTAGG
319 AATTGGATGTTTGC-TCAGG
* * * * * * * *
9514663 AGACATGAAGCGAAAGTCATCAATTGACAAGAAAAGTCTATTTATAATCACTCATGCCTTCGAAA
1 AAACGTGAAGCAAAAGCCATCCATTGAAAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAA
** * * *
9514728 GCCTAATTACTCACTTTAAATGGTTCTATAATCTTATAAATAATTTTAAGTTGAATTTTTTTACA
66 GCCTTGTTACTCGCTTTAAATGGTTTTATAAT-TTATAAATGATTTTAA-TTGAATTTTTTT-CA
* * * * * ** * *** *
9514793 TTTTTGGTTTAAACGGATTATAATCGGATGTTTGTC-TTGAGAAATGTTAAATGAAAGCCATCCA
128 -TTTTGGTTAAAACAGATCATAATTGGATGTTTG-CATTAAGAAACATGAAGCAAAAGCCATTCA
* * * * * * * * *
9514857 TTGAAAAGAAAAGTTCATCTATACTCACTCGTGCCTTCGAAACCCTAGTTACTCGCTTTAAATGA
191 TTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTAGTTACTCACTTTAAATGG
* * ** *
9514922 TTTTATAATCTTATAAATGATTTTAAGTTGAGTTT-TTATCATTTTTCATTAAAACATATCGTAA
256 TTTTATAATCTTATAAATGATTTTAAGTTGAATTTGTTTTCATTTTTGGTTAAAACATATCATAA
* * **
9514986 TTTGATGTTTGCATTAAA
321 TTGGATGTTTGC-TCAGG
** * * * * *
9515004 AAACGTGAAGCAAAAGCCATTTATTGACAAGAAAAGTCCATTTATAGTCAGTTACGCCTTTGAAA
1 AAACGTGAAGCAAAAGCCATCCATTGAAAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAA
* * * * * *
9515069 GCCTAGTTACTCTCTTTAAATAGTTTTATAAACTTATAAATGTTTTTAAGTTAAACTTTTTTTCA
66 GCCTTGTTACTCGCTTTAAATGGTTTTAT-AATTTATAAATGATTTTAA-TTGAA-TTTTTTTCA
* ** * * ** ** * * * * **
9515134 TTTTTGTTTAAAA-TTATCATAATTTGATGTTTTGCCTTGGGAAATGTGATGCGAAGGTCACCCA
128 -TTTTGGTTAAAACAGATCATAATTGGATG-TTTGCATTAAGAAACATGAAGCAAAAGCCATTCA
* * * * * * **
9515198 TTCACAAGAAAAGTCCGTTTATAGTCACTCATGCCTTTGAAAGCTTTGTTACCCGA-TTGAAGCG
191 TTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTAGTTACTC-ACTTTAAATG
* ***
9515262 G-TTTATAA-CTTTATAAATGATTTTAAATTGAA----TTTT--TTTTTCAATAAAACATA--AT
255 GTTTTATAATC-TTATAAATGATTTTAAGTTGAATTTGTTTTCATTTTTGGTTAAAACATATCAT
* **
9515317 --TT-GATGTTTTCATTGGG
319 AATTGGATGTTTGC-TCAGG
** * * * *
9515334 AAATATGATGCAAAAGCCATCCATTGACAAGACAAA-TCCATTTAGAGTCACTTATAG-CTTCG-
1 AAACGTGAAGCAAAAGCCATCCATTGAAAAGA-AAAGTCCATTTATAGTCACTCAT-GCCTTCGA
* *
9515396 AAGCCTAGTTACTCGCTTTAAATGGTTTTACAATCTTATAAATGATTTTAAGTTGAATTTTTTTT
64 AAGCCTTGTTACTCGCTTTAAATGGTTTTATAAT-TTATAAATGATTTTAA-TTGAA-TTTTTTT
* * ** * * * * * *
9515461 CATTTTTGGTTAAAACATAACATAATTTCATGTTTGCATTCAGAAACGTGACGCGAAAGCTATCC
126 CA-TTTTGGTTAAAACAGATCATAATTGGATGTTTGCATTAAGAAACATGAAGCAAAAGCCATTC
** * ** * *
9515526 ATTGACAAGAAAAGTTTATTTATAGTCACTCATGCCGTCAAAAGCTTAGTTACTCACTTTAAGTG
190 ATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTAGTTACTCACTTTAAATG
* * * ** * * * *
9515591 GTTTTATAA-CATTATAAATGATTTTAAGTTAAATTTCTTTTCATTCTTCATTCAAATAGATCTT
255 GTTTTATAATC-TTATAAATGATTTTAAGTTGAATTTGTTTTCATTTTTGGTTAAAACATATCAT
* **
9515655 AATT-TACTGTTTGCATTGGG
319 AATTGGA-TGTTTGC-TCAGG
* ** * * *
9515675 AAACATGAAGTGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGCCA-TATATGCCTTCGAA
1 AAACGTGAAGCAAAAGCCATCCATTGAAAAGAAAAGTCCATTTATAGTCACT-CATGCCTTCGAA
* ** **
9515739 AGCCTAGTTACTAACTTTAAATGGTTTTAT-A---AT-AATTCTTTGTAAGTTGAATTGTTTTTC
65 AGCCTTGTTACTCGCTTTAAATGGTTTTATAATTTATAAATGATTT-TAA-TTGAATT-TTTTTC
* * * * * * ** ** * * *
9515799 AGTTTTAGATAAAACAAATCATAATTTGTTGTTTACCGTGGGAAACGTGAAGCGAAAGCCATCCA
127 A-TTTTGGTTAAAACAGATCATAATTGGATGTTTGCATTAAGAAACATGAAGCAAAAGCCATTCA
* * * * * *
9515864 TTGACAAAAAAAGT-CATTTACAGTCACTCATGCCTTTCGAAAGTCTTA-TAACTCGCTTTAAGT
191 TTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTT-GAAAG-CCTAGTTACTCACTTTAAAT
* * * * ** * * * *
9515927 GGTTTTATAAAT-TTTTAAAT-AATTTAAATTGAATAT-TTTTCATTTTTCATTGAAATAGATCG
254 GGTTTTAT-AATCTTATAAATGATTTTAAGTTGAATTTGTTTTCATTTTTGGTTAAAACATATCA
* * *
9515989 TAATTTGATTTTTGCAT-TGG
318 TAATTGGATGTTTGC-TCAGG
* ** * ** * * * * *
9516009 CAAACGTGTAGTGAAAGCCCTTTATTCACAATG-AAAGTCCATTTACAATCACTCATGCCTTCAA
1 -AAACGTGAAGCAAAAGCCATCCATTGA-AAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGA
* * * * *
9516073 AAGCCTTGTTACTCGCATTAAGTGATTTTATAACTTTACAAAAGATTTTAAATTGAATTTTTTTT
64 AAGCCTTGTTACTCGCTTTAAATGGTTTTATAA-TTTATAAATGATTTT-AATTGAA-TTTTTTT
* * * * * * * * *
9516138 TATTTAAGGTTAAAGCATATCATAATTTGATGTGTGTC-TCAAGATACGTGAAGCAAAAGCC-TT
126 CATTT-TGGTTAAAACAGATCATAATTGGATGTTTG-CATTAAGAAACATGAAGCAAAAGCCATT
* ** * *** * *
9516201 CCATTGATAAGAAAAGTGAATTTATAGTCACCCATGCCTCCAAAAACCTAGTTACTCAATTTAAA
189 -CATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTAGTTACTCACTTTAAA
* * **
9516266 TGGCTTTATAATCTTACAAATGATTTTAAGTTGAATTTCATTTCATTTTTGGTTAAAACATATCA
253 TGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTGTTTTCATTTTTGGTTAAAACATATCA
* * * **
9516331 AAATTGGATTTTTTTTCCTTGGG
318 TAATTGGA---TGTTTGCTCAGG
* * * * * * **
9516354 AAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCTATTTCTAATCACTCATACCTTTAAAA
1 AAACGTGAAGCAAAAGCCATCCATTGAAAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAA
* * * * * * *
9516419 GTCTTGTTAATCACTTTAAGTGGTTTTATAAGTTTATAAATCATTTTAAAATGATTTTTTTTTCA
66 GCCTTGTTACTCGCTTTAAATGGTTTTATAA-TTTATAAATGATTTT-AATTGA-ATTTTTTTCA
* * * ** * * * *
9516484 TTTTGGGTTAAAA-AAAACATAAGTT-GATTGTTTGCTTTGTGAAACTTGCA-CGGAAAGCCATC
128 TTTT-GGTTAAAACAGATCATAA-TTGGA-TGTTTGCATTAAGAAACATGAAGC-AAAAGCCATT
* * * * * * * *
9516546 CGTTGAAAAGAAAAGTCTATTTATAGTCACTTATTCCTTCGAGAGCCTTA-TTACT-AGTTTTAA
189 CATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCC-TAGTTACTCA-CTTTAA
* * ** **
9516609 GTGGTTTTATAA-CTTTACAAATGATTTTAAACTGAATTTGTTTTCATTTTTCATTAAAACATAT
252 ATGGTTTTATAATC-TTATAAATGATTTTAAGTTGAATTTGTTTTCATTTTTGGTTAAAACATAT
* *
9516673 CATAATTTGATGTTTGCATTAGG
316 CATAATTGGATGTTTGC-TCAGG
* *
9516696 AAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAG-CCAATTTATAGTCACTCATGCCTTCAAA
1 AAACGTGAAGCAAAAGCCATCCATTGAAAAGAAAAGTCC-ATTTATAGTCACTCATGCCTTCGAA
* * * * * * * *
9516760 AGCATAGTTACTAGCTTTAAGTGTTTTTATAACTTTTTAAGTGTTTTTGAATTGAATTTTTTTGA
65 AGCCTTGTTACTCGCTTTAAATGGTTTTATAA-TTTATAAATGATTTT-AATTGAATTTTTTT--
* ** ** ** * * *
9516825 AAGAATTCATTAAAACAGATCATAATTTAATGTTTGCATT-GGGAACGTGAAGCAAAAGCCATTC
126 CA-TTTTGGTTAAAACAGATCATAATTGGATGTTTGCATTAAGAAACATGAAGCAAAAGCCATTC
* * ** *
9516889 ATAGAGAAGCAAAAG-CCATTTATAGTCACTCATGCCTACGAAAGTCTTA-TTACTCACTTTAAA
190 ATTGACAAG-AAAAGTCCATTTATAGTCACTCATGCCTTTGAAAG-CCTAGTTACTCACTTTAAA
* * * ** * * * *
9516952 TGGTTTTATAATCTTACATATGTTTTTAAGTCAAATTTTTTTTTCATTTTTGTTTAAAATAGATC
253 TGGTTTTATAATCTTATAAATGATTTTAAGTTGAA-TTTGTTTTCATTTTTGGTTAAAACATATC
** *
9517017 ATAATTTCATGTTTGCATTAGG
317 ATAATTGGATGTTTGC-TCAGG
* * * * * * * **
9517039 AAACATGAAGCGAAAGCCATCCATTGACAAGGAAAGTCTATTTATAGTAACTCATACCTTTAAAA
1 AAACGTGAAGCAAAAGCCATCCATTGAAAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAA
* * * * * * *
9517104 GCCTTATTACTCGCTTGAAGTGGTTTTA-ACTTTATAAATAATTTTAAATTGATTGTTTTTTTAT
66 GCCTTGTTACTCGCTTTAAATGGTTTTATAATTTATAAATGATTTT-AATTGAAT-TTTTTTCAT
* * * * ** * *
9517168 TTTAGGTTAAAACATATCATAATTTGATGTTT--ATCTCAGAAAACGTGAAGTGAAACCCATGCA
129 TTT-GGTTAAAACAGATCATAATTGGATGTTTGCAT-TAAG-AAACATGAAGCAAAAGCCATTCA
*** * * * *
9517231 TTGACAAGAAAAGTTTTTTTATAGTCCAC-CATGCCTTCGAAAACGTAGTAACTCACTTTAAATG
191 TTGACAAGAAAAGTCCATTTATAGT-CACTCATGCCTTTGAAAGCCTAGTTACTCACTTTAAATG
* ** * *
9517295 ATTTTATAATCTTATAAATGATTTTAAGTTGAA-TTGTTTTTCATTTTTTATTAAAGCAGAT-AG
255 GTTTTATAATCTTATAAATGATTTTAAGTTGAATTTG-TTTTCATTTTTGGTTAAAACATATCA-
* * *
9517358 TAATTGAATGTTT-TTCTTGG
318 TAATTGGATGTTTGCTC-AGG
** * *** * * * * * *
9517378 CCACATGAATTGAAAGCCATCTATT-AACATGAAAGGTCAATTTACAGTCACTCATGCCTT-TAA
1 AAACGTGAAGCAAAAGCCATCCATTGAA-AAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAA
* * * *
9517441 ATCCTAGTTACTCGCTTTAAATGATTTTATAATATTATAAATGATTTCAAGTT-AATTGTTTTT-
65 AGCCTTGTTACTCGCTTTAAATGGTTTTATAAT-TTATAAATGATTTTAA-TTGAATT-TTTTTC
* * * * * * **
9517504 ATTTTTGGTTAAAATAGATCATAATTTGATGTTTGCAATGAGAAACGTGGAGTGAAAG-CA-TCT
127 A-TTTTGGTTAAAACAGATCATAATTGGATGTTTGCATTAAGAAACATGAAGCAAAAGCCATTC-
* *** * * * *
9517567 AGTGACAAGAAAAGTTTGTTTATAGTCACTCATGCC-TTCAAA-CCTTAATTACTCGCTTTAAGT
190 ATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCC-TAGTTACTCACTTTAAAT
* ** ** *
9517630 AGTTTTATAA-CATTATAAATGATTTTAAACT-AATTT-TTTT-ATTTTTTATTAAAACATATCT
254 GGTTTTATAATC-TTATAAATGATTTTAAGTTGAATTTGTTTTCATTTTTGGTTAAAACATATCA
* *
9517691 TAATTTGATGTTTGCATTAGG
318 TAATTGGATGTTTGC-TCAGG
* * * * **
9517712 AAACATGAAGCGAAAGCCATCCATTGATAAGAGAAGTCCATTTATAGTCACTCATGCCTTTAAAA
1 AAACGTGAAGCAAAAGCCATCCATTGAAAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAA
** * * * *
9517777 GCCTAATTACTAGCTTTAAATGGATTTATAATCTGAT-AATTATTTTTAAGTTGAATTGCTTTTT
66 GCCTTGTTACTCGCTTTAAATGGTTTTATAAT-TTATAAATGA-TTTTAA-TTGAATT--TTTTT
* * * * * * * * * *
9517841 -AGTTTTGGATAAAACAAATCATAATTTGTTGTTTACCTTGAGAAACATAAAGCGAAAGCCATCC
126 CA-TTTTGGTTAAAACAGATCATAATTGGATGTTTGCATTAAGAAACATGAAGCAAAAGCCATTC
* * * * * * * *
9517905 ATGGATAAGAAAAGTCCATTTACAGTCACTCATGCCTTTCGAAAGTCTTGTAACTCGCTCTAAAT
190 ATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTT-GAAAGCCTAGTTACTCACTTTAAAT
* * ** * ** * * * **
9517970 AGTTTTATAAAT-TTATAAAT-AATTTAAACTGAATTTTTTTTCATTTTTCATTGAAATAGATTG
254 GGTTTTAT-AATCTTATAAATGATTTTAAGTTGAATTTGTTTTCATTTTTGGTTAAAACATATCA
* **
9518033 TAATTTGATGTTTGCATTGGG
318 TAATTGGATGTTTGC-TCAGG
** * * * * *
9518054 AAACGTGAAGTGAAAGCCCTCCATTCACAATAAAAGTCCATTTATAGTCACTCATGCCTTTGAAA
1 AAACGTGAAGCAAAAGCCATCCATTGAAAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAA
* * * * * *
9518119 GCCTTATTACTCG-TATTAAGTGATTTTATAACTTTACAAATGATTTTAGGTTGAATTTCTTTTT
66 GCCTTGTTACTCGCT-TTAAATGGTTTTATAA-TTTATAAATGATTTTA-ATTGAATTT-TTTTC
* * * ** *
9518183 ATTTTTGGTTAAAACAGATCATAATTTGATGTTTGTC-TCAGGAAATGTGAAGCAAAAGCCATCC
127 A-TTTTGGTTAAAACAGATCATAATTGGATGTTTG-CATTAAGAAACATGAAGCAAAAGCCATTC
* * * * * * *
9518247 ATTAATAGGAAAAGTCCATTTATAGTCACTCATACCTCTGAAAGCCT-GATTACTCAATTGAAAT
190 ATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTAG-TTACTCACTTTAAAT
* * * * * * *
9518311 GGTTATATAATCTAACAAATGATTTTAAGTTAAATTTTTTTTCA-TTTTGGTTAAATCATATCAA
254 GGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTGTTTTCATTTTTGGTTAAAACATATCAT
* * *
9518375 AATTGGATTTTTTC-CTTGAG
319 AATTGGATGTTTGCTC-AG-G
* * * * * * ** **
9518395 AAATGTGAAGCGAAAGCTATCCATT-AACAACAAAAGTTCATTTATAATCACTCACACCTTTAAA
1 AAACGTGAAGCAAAAGCCATCCATTGAA-AAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAA
* * * ** * *
9518459 AGCCTTGTTGCTCGCTTTAAGTGCTTTTATAACTTTATATCTGATTTTAAAATGATTTTTTTTTT
65 AGCCTTGTTACTCGCTTTAAATGGTTTTATAA-TTTATAAATGATTTT-AATTGA--ATTTTTTT
* ** * * *
9518524 CATTTTGGGTTAAAACAGATTATAATTTAATTGTTTGCTATGTAA-AAA-GTGTAGCAAAAGCTA
126 CATTTT-GGTTAAAACAGATCATAATTGGA-TGTTTGC-AT-TAAGAAACATGAAGCAAAAGCCA
* * * * * * * ** * *
9518587 TCCGTTGACAAAAAAAATCTATTTATAGTCATTTACACCTTTGATAGCCTTA-TTACT-AGTTTT
187 TTCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCC-TAGTTACTCA-CTTT
* * * * * *
9518650 AAGTGGTTTTATAA-CTT-TGCAAATGATTTTAAATTGCATTTCTTTTCACTTTTCGTTAAAACA
250 AAATGGTTTTATAATCTTAT--AAATGATTTTAAGTTGAATTTGTTTTCATTTTTGGTTAAAACA
* * *
9518713 TATCATAATTTGATATTTGCATTAGG
313 TATCATAATTGGATGTTTGC-TCAGG
* * * * *
9518739 AAACGTGAAGCAAAAGCCATTCATTCACAAGAAAAGTCCATTTATAGTCACTCATACGTTCGAAA
1 AAACGTGAAGCAAAAGCCATCCATTGAAAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAA
** * * * *
9518804 GTATAGATTATTAGCTTTAAATGGTTTTATGATCTTATAAATG-TTTCTAAGTTGAATTATTTTA
66 GCCTTG-TTACTCGCTTTAAATGGTTTTATAAT-TTATAAATGATTT-TAA-TTGAATT-TTTT-
* * * * *** ** * * * *
9518868 TCAATATTT-TTTACAACAAATCATAATTTGATGTTTATGTTGGGAAACGTGAAGTAAAGGTCAT
125 TC-AT-TTTGGTTAAAACAGATCATAATTGGATGTTTGCATTAAGAAACATGAAGCAAAAGCCAT
* * * * * * *
9518932 CCATTGACAAGAAAAGTCCCTTTATAGTCAATCATGCCTTCGAAAGCTTTGTTACTCACTTTAAG
188 TCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTAGTTACTCACTTTAAA
* * * ** *
9518997 TGGTTCTATAA-CTTTATAAATGATTTTGAA-TAGAATTT-TTTATC-GTTTTCCTTAAAACAGA
253 TGGTTTTATAATC-TTATAAATGATTTT-AAGTTGAATTTGTTT-TCATTTTTGGTTAAAACATA
* * * *
9519058 TCGTAATTTGATGTTTGGATTAGG
315 TCATAATTGGATGTTT-GCTCAGG
* ** * * * *** *
9519082 AAACCTGAAGTGAAAGTCATCCATTGACAAGAAAAATCCATTTATAGTCACTCACAACTTCAAAA
1 AAACGTGAAGCAAAAGCCATCCATTGAAAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAA
* * * *
9519147 G-CTTAAG-TACTCGATTTAAATAGTTTTATAATCTTATAAATGCTTTTAAGTTGAATTTTTTCC
66 GCCTT--GTTACTCGCTTTAAATGGTTTTATAAT-TTATAAATGATTTTAA-TTGAATTTTTTTC
* * * ** * * ** * *
9519210 TTTTTTGGTTAAACCAAATCATTGTTGGATGTTTGCCTTGAGAAATGTGAAGCGAAAGCCATCCA
127 -ATTTTGGTTAAAACAGATCATAATTGGATGTTTGCATTAAGAAACATGAAGCAAAAGCCATTCA
* ** ** * * * *
9519275 TTGACAAGAAAAATCCATTTATAGTCACTCATGCCTTCAAAAGCCTTCTTACACGCTTTTAGTGG
191 TTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTAGTTACTCACTTTAAATGG
* *** *
9519340 TTTAATAAGT-TTATAAAT-ACTTTTTAA-TTGAAATTT-TTTTCATTTCAAGTTAAAACAGATC
256 TTTTATAA-TCTTATAAATGA--TTTTAAGTTG-AATTTGTTTTCATTTTTGGTTAAAACATATC
* * *
9519401 ATAATTTGATGTTTGGATTAGG
317 ATAATTGGATGTTT-GCTCAGG
* ** * * * *
9519423 AAACGTGAAGCGAAAGCCATTTATTGACAAGAGAAGTCCGTTTATAGTCACTCACAG-CTTCGAA
1 AAACGTGAAGCAAAAGCCATCCATTGAAAAGAAAAGTCCATTTATAGTCACTCA-TGCCTTCGAA
* * * * *
9519487 AG-CTTAGGTACTTGATTTAAATAGTTTTATAATCTTATAAATGCTTTTAAGTTGAATTAATTTT
65 AGCCTT-GTTACTCGCTTTAAATGGTTTTATAAT-TTATAAATGATTTTAA-TTGAATT--TTTT
* * * * * *
9519551 TCTTTTTTAGTTAAAACAGATCATAATTGGATGTTTGCCTTGAGAAACATGAAGCGAAAGCCATC
125 TC-ATTTTGGTTAAAACAGATCATAATTGGATGTTTGCATTAAGAAACATGAAGCAAAAGCCATT
* * ** * * *
9519616 CATTGACAAGAAAAGTCAATTTATAGTCACTCATGCCTTCGAAAGCCTTCTTAC-AAGCTTTTAG
189 CATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTAGTTACTCA-CTTTAAA
* * * ***
9519680 TGGTTTAATAAGT-TTATAAATGTTTTTTAA-TTAAAATTT-TTTTCATTTCAAGTTAAAACATA
253 TGGTTTTATAA-TCTTATAAATG-ATTTTAAGTT-GAATTTGTTTTCATTTTTGGTTAAAACATA
* * * * *
9519742 TCATAATTTGCTATTTGTATTAGG
315 TCATAATTGGATGTTTG-CTCAGG
* * * * *
9519766 AAACATGAAGCGAAAGCCATTCATTGATAAGAAAAGTCCATTTATAGTCACTCACAG-CTTCGAA
1 AAACGTGAAGCAAAAGCCATCCATTGAAAAGAAAAGTCCATTTATAGTCACTCA-TGCCTTCGAA
* * * * *
9519830 AG-CTTAGGTACTTGATTTAAATAGTTTTATAATCTTATAAATGCTTTTAAGTTGAATTTGTTTT
65 AGCCTT-GTTACTCGCTTTAAATGGTTTTATAAT-TTATAAATGATTTTAA-TTGAATTT-TTTT
* * * * * * * *
9519894 CTTTTTTGATTAAAATAGATCATAATTGGATGTTTTCCTTGAGAAACATGAAGCGAAAGCCATCC
126 C-ATTTTGGTTAAAACAGATCATAATTGGATGTTTGCATTAAGAAACATGAAGCAAAAGCCATTC
* * * * * * * *
9519959 ATTGACAGGAAAAGTCCATTTATAGTCACTCATGCCTTCGGAAGCCTTGTTACACGCTTTTAGTG
190 ATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTAGTTACTCACTTTAAATG
* * ** *** *
9520024 GTTTAATAA-CTTTATAACTAT-TTTTTAA-TTGAAAGT-TTTTCATTTCAAGTTAAAACAAATC
255 GTTTTATAATC-TTATAA--ATGATTTTAAGTTGAATTTGTTTTCATTTTTGGTTAAAACATATC
* * * *
9520085 ATAATTTGATGTTTGGATTAGA
317 ATAATTGGATGTTT-GCTCAGG
* * * * *
9520107 AAACGTGAAGCGAAAGCCATTCATTGACAA-AAAAGTCCATTTATAGTCACCCATACCTTCGAAA
1 AAACGTGAAGCAAAAGCCATCCATTGAAAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAA
* * * ** *
9520171 GCCTTATTACTCGATTCATGTGGTTTTATAACTTTATAAATAATTTTAAATTGAATTTGTTCTT-
66 GCCTTGTTACTCGCTTTAAATGGTTTTATAA-TTTATAAATGATTTT-AATTGAATTT-TT-TTC
** * * * * * *
9520235 ATCTTTCATTCAAACATATCATAATTTGATGTTTGCATTCAGAAACATGAAGCGAAAGCCATCCA
127 AT-TTTGGTTAAAACAGATCATAATTGGATGTTTGCATTAAGAAACATGAAGCAAAAGCCATTCA
* * * * * * *
9520300 CTGACAAGAAAAGTCCATTTATATTCATTCCTGCCTTCGAAAGCATAGTTACTCAGTTTAAATGG
191 TTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTAGTTACTCACTTTAAATGG
* * *
9520365 TTTTATAATCTTATAAATAATTTTAAATTGAATTT-TTTTACATTTTTGGTTAAAATAGT-TCAT
256 TTTTATAATCTTATAAATGATTTTAAGTTGAATTTGTTTT-CATTTTTGGTTAAAACA-TATCAT
* * *
9520428 AATTAGAGGTTTGTCTCAAG
319 AATTGGATGTTTG-CTCAGG
* * * * * * * *** * * *
9520448 AAACATTAAACGAGAGCCGTCCATTGACAAGAAAAGTTTGTTTGTAGTCACTCGTGCCTTTGAAA
1 AAACGTGAAGCAAAAGCCATCCATTGAAAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAA
* * * * *
9520513 GTCTAGTTACTCACTTAAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTATCAT
66 GCCTTGTTACTCGCTTTAAATGGTTTTATAAT-TTATAAATGATTTTAA-TTGAATTTTTTTCA-
** * ** * ** *
9520578 TTTTCATTAAAACAGATCATAGTTTAATGTTAGCATTGGGAAACATGAAGCGAAAGCCATTCATT
128 TTTTGGTTAAAACAGATCATAATTGGATGTTTGCATTAAGAAACATGAAGCAAAAGCCATTCATT
* * * * *
9520643 GACAAGCAAAGTCTATTTATAGTCACTCATGCCTTCGAAAGCCGAATTACTCACTTTAAATGGTT
193 GACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTAGTTACTCACTTTAAATGGTT
* * * * * ***
9520708 CTATAATCTCATAAATGATTGTAGGTTGAATTT-TTTTACATTTTTTGTTAAAAGGGATCATAAT
258 TTATAATCTTATAAATGATTTTAAGTTGAATTTGTTTT-CATTTTTGGTTAAAACATATCATAAT
* *
9520772 CGGATGTTTG-TCTTGAG
322 TGGATGTTTGCTC-AG-G
* * * * * * * * * * *
9520789 AAACATTAAACGAAAGCTATCCATT-AACAAGAAAACTTCATCTATAGTCACTCGTACCTTCGAT
1 AAACGTGAAGCAAAAGCCATCCATTGAA-AAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAA
* * *
9520853 AG-CTTAGTTACTCTCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGCTGAATTTTTATC
65 AGCCTT-GTTACTCGCTTTAAATGGTTTTATAAT-TTATAAATGATTTTAA-TTGAATTTTTTTC
** * * ** * **
9520917 ATATTTCATTAAAACATATCGTAATT-GATGTTTGCATTGGGAAACGTGAAGCGCAAGCCATTCA
127 AT-TTTGGTTAAAACAGATCATAATTGGATGTTTGCATTAAGAAACATGAAGCAAAAGCCATTCA
* * * * ** * *
9520981 TTTACAAGAAAAGTCCATTTATCGTCAGTCATACCTTCAAAAGCCTAGTTACTCGCTTTAAATAG
191 TTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTAGTTACTCACTTTAAATGG
* * * * ***
9521046 TTTTCTAATCTTATAAATGTTTTTAAGTTGAATTTTTTTTTCATTCTCATTTAAAACATATCATA
256 TTTTATAATCTTATAAATGATTTTAAGTTGAA-TTTGTTTTCATTTTTGGTTAAAACATATCATA
* *
9521111 ATTTGATGTTTTGC-CTTGG
320 ATTGGATG-TTTGCTC-AGG
* * * * * ** *
9521130 AAAACATGACA-CGAAGGTCACCCATTGGCAAGAAAAGTCCATTTATAATCACTCATGCCTTTC-
1 -AAACGTGA-AGCAAAAGCCATCCATTGAAAAGAAAAGTCCATTTATAGTCACTCATGCC-TTCG
*
9521193 AAAGCTTTGTTACT
63 AAAGCCTTGTTACT
9521207 TAGTTGAAGA
Statistics
Matches: 7655, Mismatches: 1493, Indels: 796
0.77 0.15 0.08
Matches are distributed among these distances:
305 11 0.00
306 137 0.02
307 44 0.01
308 3 0.00
312 5 0.00
313 1 0.00
314 2 0.00
315 4 0.00
316 2 0.00
317 6 0.00
318 4 0.00
320 1 0.00
321 7 0.00
322 127 0.02
323 127 0.02
324 17 0.00
325 11 0.00
326 2 0.00
327 5 0.00
328 4 0.00
329 150 0.02
330 108 0.01
331 11 0.00
332 36 0.00
333 217 0.03
334 88 0.01
335 178 0.02
336 113 0.01
337 224 0.03
338 306 0.04
339 488 0.06
340 1185 0.15
341 1672 0.22
342 1083 0.14
343 758 0.10
344 444 0.06
345 68 0.01
346 3 0.00
347 3 0.00
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.38
Consensus pattern (337 bp):
AAACGTGAAGCAAAAGCCATCCATTGAAAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAA
GCCTTGTTACTCGCTTTAAATGGTTTTATAATTTATAAATGATTTTAATTGAATTTTTTTCATTT
TGGTTAAAACAGATCATAATTGGATGTTTGCATTAAGAAACATGAAGCAAAAGCCATTCATTGAC
AAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTAGTTACTCACTTTAAATGGTTTTA
TAATCTTATAAATGATTTTAAGTTGAATTTGTTTTCATTTTTGGTTAAAACATATCATAATTGGA
TGTTTGCTCAGG
Found at i:9512887 original size:151 final size:152
Alignment explanation
Indices: 9512631--9512921 Score: 406
Period size: 151 Copynumber: 1.9 Consensus size: 152
9512621 TTTAAGTTGA
* * * * *
9512631 TTTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGTACGTTTGCCTCAAGAAATATGAAGCGA
1 TTTTTGTTTCATTTTTGGCTAAAACAGATCATAATTGGACGTTTGCCTCAAAAAACATGAAGCGA
* * *
9512696 AACCCATCCATTAACAAGAAAAGTCCATTTACGATCACTCATGCCTTCGAAAGCCTAGTTACTCA
66 AACCCACCCATTAACAAGAAAAGTCCATTTAAGACCACTCATGCCTTCGAAAGCCTAGTTACTCA
9512761 CTTTAAATGGTTTTAGTTAAAG
131 CTTTAAATGGTTTTAGTTAAAG
* * * * *
9512783 TTTTTGTTT-ATTTTTGGCTAAAATAGATCATAATTGGATGTTTGTCTTAAAAAACATGAAGTGA
1 TTTTTGTTTCATTTTTGGCTAAAACAGATCATAATTGGACGTTTGCCTCAAAAAACATGAAGCGA
* * **
9512847 AAGCCACCCATTGACAATTAAAGTCCATTTATAG-CCACTCATGCCTTCGAAAGCCTAGTTACTC
66 AACCCACCCATTAACAAGAAAAGTCCATTTA-AGACCACTCATGCCTTCGAAAGCCTAGTTACTC
9512911 ACTTTAAATGG
130 ACTTTAAATGG
9512922 GTATATAATC
Statistics
Matches: 121, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
151 112 0.93
152 9 0.07
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (152 bp):
TTTTTGTTTCATTTTTGGCTAAAACAGATCATAATTGGACGTTTGCCTCAAAAAACATGAAGCGA
AACCCACCCATTAACAAGAAAAGTCCATTTAAGACCACTCATGCCTTCGAAAGCCTAGTTACTCA
CTTTAAATGGTTTTAGTTAAAG
Found at i:9513507 original size:169 final size:167
Alignment explanation
Indices: 9512764--9514517 Score: 1281
Period size: 170 Copynumber: 10.4 Consensus size: 167
9512754 TTACTCACTT
* * * * * *
9512764 TAAATGGTTTT-AGTTAAAGTTTTTGTTTATTTTTGGCTAAAATAGATCATAATTGGATGTTTGT
1 TAAATGATTTTAAGTTGAA-TTTTT-TTCATTTTTGGTTAAAACATATCATAATTGGATGTTTGT
* * * * ** *
9512828 CTTAAAAAACATGAAGTGAAAGCCACCCATTGACAATTAAAGTCCATTTATAGCCACTCATGCCT
64 CTT-AGAAACTTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCT
* * *
9512893 TCGAAAGCCTAGTTACTCACTTTAAATGGGTATATAATCTTA
128 TC-AAAGCCTTGTTACTCGCTTTAAAT-GGTTTATAATCTTA
* * * *
9512935 TAAATTATTTTAAGTTGAATCTTTTTTTCATTCTTGGTTAAAACTTATCATAATTGGATGTCTGT
1 TAAATGATTTTAAGTTGAA--TTTTTTTCATTTTTGGTTAAAACATATCATAATTGGATGTTTGT
* * *
9513000 -TTAGGAAAATGTGAAGCGAAAGCCATACATTGACAAGAAAAGTCCATTTATAATCACTCATG-C
64 CTTA-GAAACT-TGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCC
* * * * *
9513063 TTGGGAAAACCTAGTTACTTGCTTTAAATGGTTTTATAACCTTA
127 TT--CAAAGCCTTGTTACTCGCTTTAAATGG-TTTATAATCTTA
* * * *
9513107 TAAATGATTTTAAGTTGAATTTGTTTTCAATTTTGGTTAAACCAGATCATAATTGGGTGTTTGTC
1 TAAATGATTTTAAGTTGAATTT-TTTTCATTTTTGGTTAAAACATATCATAATTGGATGTTTGTC
* * * * ** ** * * * * * *
9513172 TGAAAAAACGTGATGTAAAAGTTATCAATTGGCAAGAAAAGT-CAATTATTGTAACTTATGCCTT
65 T-TAGAAACTTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCC-T
* * ** * *
9513236 TGAAAGTCTTGTTACAAGGTTTAAATGGTTTTATAATCTTC
128 TCAAAGCCTTGTTACTCGCTTTAAATGG-TTTATAATCTTA
* * ** * * *
9513277 TAAATGATTTTAAGTTGAATTTTTTTTAGTTTTAATTTAAACATATCATACTTGGATGTTTGACT
1 TAAATGATTTTAAGTTGAATTTTTTTCATTTTTGGTTAAAACATATCATAATTGGATGTTTGTCT
* * * * * *
9513342 CTAGAAACTTGAGGCAAAAGTCATCCATTAACAAGGAAAGTCCATTTATTGTCACTCATGCCTTC
66 -TAGAAACTTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTC
* *
9513407 AAGAGCCTTGTTACTCGCTTTAAATGGTTTATAATATCA
130 AA-AGCCTTGTTACTCGCTTTAAATGGTTTATAATCTTA
* * *
9513446 TAGATGATTTTAAGTTGAATTTTTCTT-ATTTTTGGTTAAAACATATCATAATTGTATGTTTGCC
1 TAAATGATTTTAAGTTGAATTTTT-TTCATTTTTGGTTAAAACATATCATAATTGGATGTTTGTC
** * * * * *
9513510 ACAAGAAA-TGTGTAGTGAAAGCTATCCATTGACAAGAAAAGCCCATTTATTGTCACTCATGCCG
65 -TTAGAAACT-TGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCC-
* * * * *
9513574 ATGAAAGTCTTATTACTCGCTTTAAATAGTTTTATAATCTTA
127 TTCAAAGCCTTGTTACTCGCTTTAAAT-GGTTTATAATCTTA
** ** * * *
9513616 TTTATGATTTTAAGTCAAATTTTTTTCATTTTT-CTTAAAACATGTCATAATTTGATGTTTG-CA
1 TAAATGATTTTAAGTTGAATTTTTTTCATTTTTGGTTAAAACATATCATAATTGGATGTTTGTC-
* * * *
9513679 TTGAGAAA-TGTCAAGCGAAAGCCATCCATTGATAAGAAAAGTCTATTTATAGTTACTCATGCCT
65 TT-AGAAACT-TGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCC-
* * *
9513743 TTAAAAGCCTTGTTACTTGCTTTAAGTGGTTT-TAA-CTTTA
127 TTCAAAGCCTTGTTACTCGCTTTAAATGGTTTATAATC-TTA
* * * *
9513783 TAAATGATTTTAAATTGAATTTCTTTTTGATTTTAGGTTAAAACATATCATAATTTGATGTTTGT
1 TAAATGATTTTAAGTTGAA-TT-TTTTTCATTTTTGGTTAAAACATATCATAATTGGATGTTTGT
* * * * * * * *
9513848 CTCAGGAAACATAAAGTGAAACCCATGCATTGACAAGAAAAGTTCATTTATAGTCACCCATGCCC
64 CTTA-GAAACTTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG-CC
* * * * *
9513913 TTAAAAGCCTAGTAACTCACTTTAAATTGTTTTATAATCTTA
127 TTCAAAGCCTTGTTACTCGCTTTAAA-TGGTTTATAATCTTA
* * **
9513955 TAAATGATTTTAAGTTGAATTGTTTTTCATTTTTGATTGAAACATATTTTAATT-GAGTGCTTT-
1 TAAATGATTTTAAGTTGAATT-TTTTTCATTTTTGGTTAAAACATATCATAATTGGA-TG-TTTG
* * * * * * * * * *
9514018 TCTTGGTAACGTGAAGCGAAGGCGATCCACTAACAAGAAAAGTCCCTTTATAGTCAATTATGCCT
63 TCTTAGAAACTTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCT
* * * *
9514083 TCGAAAGCTTTATTACTCGCTTTAAGTGATTTTATAA-CTCTA
128 TC-AAAGCCTTGTTACTCGCTTTAAATG-GTTTATAATCT-TA
* * * * * * **
9514125 TAAATGATTTTAAATTGAATTTTTTTCATTTTT-CTAAAAAGCATATCGTAATTTGAGGTTCATA
1 TAAATGATTTTAAGTTGAATTTTTTTCATTTTTGGTTAAAA-CATATCATAATTGGATGTTTGT-
* * * * * * * * *
9514189 GTGAGAAACGTGAAGCAAAATCCATCCATTAACAAACAAAAGTTCATTTATA---A---ATG-GT
64 CTTAGAAACTTGAAGCGAAAGCCATCCATTGAC-AAGAAAAGTCCATTTATAGTCACTCATGCCT
* * * **
9514247 TTAAATG-GTTAGGTACTCG-TTGTAAATAATTTATAATCTTA
128 TCAAA-GCCTT-GTTACTCGCTT-TAAATGGTTTATAATCTTA
* * * * **
9514288 TAAATGCTTTTAAGTTGAATTTTTTTCATTTTTGATTAAAACATATCATAGTTAGATGTTTACCT
1 TAAATGATTTTAAGTTGAATTTTTTTCATTTTTGGTTAAAACATATCATAATTGGATGTTTGTCT
* * * * ** *
9514353 CGAGAAACGTGTAGCGAAAGCCATCCATTTACAAGAAAAGTCCATTTATAGTCGTTCATGCTTTC
66 -TAGAAACTTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTC
* * * *
9514418 GAAAGCTTTGTTACACGCTTTAAGTAGTTTAATAA-CTTTA
130 -AAAGCCTTGTTACTCGCTTTAAATGGTTT-ATAATC-TTA
* * * * *** * *
9514458 TAAGTGGTTTTAAATTGAATTTGTTTCATTTCAAGTTAAAACAGATCATAATTTGATGTT
1 TAAATGATTTTAAGTTGAATTTTTTTCATTTTTGGTTAAAACATATCATAATTGGATGTT
9514518 CAGATCAAGA
Statistics
Matches: 1256, Mismatches: 267, Indels: 121
0.76 0.16 0.07
Matches are distributed among these distances:
162 17 0.01
163 90 0.07
164 20 0.02
165 3 0.00
166 1 0.00
167 20 0.02
168 19 0.02
169 357 0.28
170 424 0.34
171 134 0.11
172 164 0.13
173 7 0.01
ACGTcount: A:0.33, C:0.13, G:0.15, T:0.39
Consensus pattern (167 bp):
TAAATGATTTTAAGTTGAATTTTTTTCATTTTTGGTTAAAACATATCATAATTGGATGTTTGTCT
TAGAAACTTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCA
AAGCCTTGTTACTCGCTTTAAATGGTTTATAATCTTA
Found at i:9515076 original size:170 final size:170
Alignment explanation
Indices: 9514554--9521190 Score: 5182
Period size: 171 Copynumber: 39.0 Consensus size: 170
9514544 CATTCGTTTA
* * *
9514554 AAAGCCTTA-TTACTCGCTTTAAGTGGTTTTATAA-CTTTATAAATAATTTTAAATTG-ATTTTG
1 AAAGCC-TAGTTACTCGCTTTAAATGGTTTTATAATC-TTATAAATGATTTTAAGTTGAATTTT-
* * * * *
9514616 TTCTCATTTTTCATTAAAACATATCATAATTTGATGTTTGCATTAGGAGACATGAAGCGAAAGTC
63 TT-TCATTTTTCATTAAAACAGATCATAATTTGATGTTTGCATTGGGAAACGTGAAGCGAAAGCC
* * *
9514681 ATCAATTGACAAGAAAAGTCTATTTATAATCACTCATGCCTTCG
127 ATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCG
* * * *
9514725 AAAGCCTAATTACTCACTTTAAATGGTTCTATAATCTTATAAATAATTTTAAGTTGAATTTTTTT
1 AAAGCCTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTT
** * * * ** * * * **
9514790 ACATTTTTGGTTTAAACGGATTATAATCGGATGTTTGTC-TTGAGAAATGTTAAATGAAAGCCAT
66 -CATTTTTCATTAAAACAGATCATAATTTGATGTTTG-CATTGGGAAACGTGAAGCGAAAGCCAT
* * * * *
9514854 CCATTGAAAAGAAAAGTTCATCTATACTCACTCGTGCCTTCG
129 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCG
* * * *
9514896 AAACCCTAGTTACTCGCTTTAAATGATTTTATAATCTTATAAATGATTTTAAGTTGAGTTTTTAT
1 AAAGCCTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTT
* * *** * **
9514961 CATTTTTCATTAAAACATATCGTAATTTGATGTTTGCATTAAAAAACGTGAAGCAAAAGCCATTT
66 CATTTTTCATTAAAACAGATCATAATTTGATGTTTGCATTGGGAAACGTGAAGCGAAAGCCATCC
* * * *
9515026 ATTGACAAGAAAAGTCCATTTATAGTCAGTTACGCCTTTG
131 ATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCG
* * * * *
9515066 AAAGCCTAGTTACTCTCTTTAAATAGTTTTATAAACTTATAAATGTTTTTAAGTTAAACTTTTTT
1 AAAGCCTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA-TTTTTT
** ** * * * * * *
9515131 TCATTTTTGTTTAAAA-TTATCATAATTTGATGTTTTGCCTTGGGAAATGTGATGCGAAGGTCAC
65 TCATTTTTCATTAAAACAGATCATAATTTGATG-TTTGCATTGGGAAACGTGAAGCGAAAGCCAT
* * *
9515195 CCATTCACAAGAAAAGTCCGTTTATAGTCACTCATGCCTTTG
129 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCG
* * * * * ** *
9515237 AAAGCTTTGTTACCCGATTGAAGCGG-TTTATAA-CTTTATAAATGATTTTAAATTGAA---TTT
1 AAAGCCTAGTTACTCGCTTTAAATGGTTTTATAATC-TTATAAATGATTTTAAGTTGAATTTTTT
* * ** * *
9515297 T--TTTTTCA--ATAA-A-A-CATAATTTGATGTTTTCATTGGGAAATATGATGCAAAAGCCATC
65 TCATTTTTCATTAAAACAGATCATAATTTGATGTTTGCATTGGGAAACGTGAAGCGAAAGCCATC
* *
9515355 CATTGACAAGACAAA-TCCATTTAGAGTCACTTATAG-CTTCG
130 CATTGACAAGA-AAAGTCCATTTATAGTCACTCAT-GCCTTCG
*
9515396 -AAGCCTAGTTACTCGCTTTAAATGGTTTTACAATCTTATAAATGATTTTAAGTTGAATTTTTTT
1 AAAGCCTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA-TTTTTT
** * * * ** * *
9515460 TCATTTTTGGTTAAAACATAACATAATTTCATGTTTGCATTCAGAAACGTGACGCGAAAGCTATC
65 TCATTTTTCATTAAAACAGATCATAATTTGATGTTTGCATTGGGAAACGTGAAGCGAAAGCCATC
** * *
9515525 CATTGACAAGAAAAGTTTATTTATAGTCACTCATGCCGTCA
130 CATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCG
* * * *
9515566 AAAGCTTAGTTACTCACTTTAAGTGGTTTTATAA-CATTATAAATGATTTTAAGTTAAATTTCTT
1 AAAGCCTAGTTACTCGCTTTAAATGGTTTTATAATC-TTATAAATGATTTTAAGTTGAATTT-TT
* * * * * *
9515630 TTCATTCTTCATTCAAATAGATCTTAATTT-ACTGTTTGCATTGGGAAACATGAAGTGAAAGCCA
64 TTCATTTTTCATTAAAACAGATCATAATTTGA-TGTTTGCATTGGGAAACGTGAAGCGAAAGCCA
* *
9515694 TCCATTGACAAGAAAAGTCCATTTATAGCCA-TATATGCCTTCG
128 TCCATTGACAAGAAAAGTCCATTTATAGTCACT-CATGCCTTCG
** **
9515737 AAAGCCTAGTTACTAACTTTAAATGGTTTTAT-A----AT-AATTCTTTGTAAGTTGAATTGTTT
1 AAAGCCTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTT-TAAGTTGAATT-TTT
* * * * * **
9515796 TTCAGTTTT-AGATAAAACAAATCATAATTTGTTGTTTACCGTGGGAAACGTGAAGCGAAAGCCA
64 TTCATTTTTCA-TTAAAACAGATCATAATTTGATGTTTGCATTGGGAAACGTGAAGCGAAAGCCA
* *
9515860 TCCATTGACAAAAAAAGT-CATTTACAGTCACTCATGCCTTTCG
128 TCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCC-TTCG
* * * * * * *
9515903 AAAGTCTTA-TAACTCGCTTTAAGTGGTTTTATAAAT-TTTTAAAT-AATTTAAATTGAATATTT
1 AAAG-CCTAGTTACTCGCTTTAAATGGTTTTAT-AATCTTATAAATGATTTTAAGTTGAATTTTT
* * * * * * * *
9515965 TTCATTTTTCATTGAAATAGATCGTAATTTGATTTTTGCATTGGCAAACGTGTAGTGAAAGCCCT
64 TTCATTTTTCATTAAAACAGATCATAATTTGATGTTTGCATTGGGAAACGTGAAGCGAAAGCCAT
** * * * *
9516030 TTATTCACAATG-AAAGTCCATTTACAATCACTCATGCCTTCA
129 CCATTGACAA-GAAAAGTCCATTTATAGTCACTCATGCCTTCG
* * * * * * *
9516072 AAAGCCTTGTTACTCGCATTAAGTGATTTTATAA-CTTTACAAAAGATTTTAAATTGAATTTTTT
1 AAAGCCTAGTTACTCGCTTTAAATGGTTTTATAATC-TTATAAATGATTTTAAGTTGAATTTTTT
* * * * *** * *
9516136 T--TTATTTAAGGTTAAAGCATATCATAATTTGATGTGTGTC-TCAAGATACGTGAAGCAAAAGC
65 TCATT-TTTCA--TTAAAACAGATCATAATTTGATGTTTG-CATTGGGAAACGTGAAGCGAAAGC
* * ** * * *
9516198 CTTCCATTGATAAGAAAAGTGAATTTATAGTCACCCATGCCTCCA
126 CATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCG
* ** * * *
9516243 AAAACCTAGTTACTCAATTTAAATGGCTTTATAATCTTACAAATGATTTTAAGTTGAATTTCATT
1 AAAGCCTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTT-TTT
** * * * * * * * *
9516308 TCATTTTTGGTTAAAACATATCAAAATTGGATTTTTTTTCCTTGGGAAACATGAAGCAAAAGCCA
65 TCATTTTTCATTAAAACAGATCATAATTTGA--TGTTTGCATTGGGAAACGTGAAGCGAAAGCCA
* * * * **
9516373 TCCATTGACAAGAAAAGTCTATTTCTAATCACTCATACCTTTA
128 TCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCG
* * * * * * ** *
9516416 AAAGTCTTGTTAATCACTTTAAGTGGTTTTATAAGT-TTATAAATCATTTTAAAATGATTTTTTT
1 AAAGCCTAGTTACTCGCTTTAAATGGTTTTATAA-TCTTATAAATGATTTTAAGTTGA-ATTTTT
*** * * * * * * *
9516480 TTCATTTTGGGTTAAAA-AAAACATAAGTTGATTGTTTGCTTTGTGAAACTTGCA-CGGAAAGCC
64 TTCATTTTTCATTAAAACAGATCATAATTTGA-TGTTTGCATTGGGAAACGTGAAGC-GAAAGCC
* * * * *
9516543 ATCCGTTGAAAAGAAAAGTCTATTTATAGTCACTTATTCCTTCG
127 ATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCG
* * * * * **
9516587 AGAGCCTTA-TTACTAGTTTTAAGTGGTTTTATAA-CTTTACAAATGATTTTAAACTGAATTTGT
1 AAAGCC-TAGTTACTCGCTTTAAATGGTTTTATAATC-TTATAAATGATTTTAAGTTGAATTT-T
* * *
9516650 TTTCATTTTTCATTAAAACATATCATAATTTGATGTTTGCATTAGGAAACGTGAAGCAAAAGCCA
63 TTTCATTTTTCATTAAAACAGATCATAATTTGATGTTTGCATTGGGAAACGTGAAGCGAAAGCCA
*
9516715 TCCATTGACAAGAAAAG-CCAATTTATAGTCACTCATGCCTTCA
128 TCCATTGACAAGAAAAGTCC-ATTTATAGTCACTCATGCCTTCG
* * * * * * *
9516758 AAAGCATAGTTACTAGCTTTAAGTGTTTTTATAA-CTTTTTAAGTGTTTTTGAA-TTGAATTTTT
1 AAAGCCTAGTTACTCGCTTTAAATGGTTTTATAATC-TTATAAATGATTTT-AAGTTGAATTTTT
* *** * *
9516821 TTGAAAGAATTCATTAAAACAGATCATAATTTAATGTTTGCATTGGG-AACGTGAAGCAAAAGCC
64 TT--CATTTTTCATTAAAACAGATCATAATTTGATGTTTGCATTGGGAAACGTGAAGCGAAAGCC
* * * *
9516885 ATTCATAGAGAAGCAAAAG-CCATTTATAGTCACTCATGCCTACG
127 ATCCATTGACAAG-AAAAGTCCATTTATAGTCACTCATGCCTTCG
* * * * * **
9516929 AAAGTCTTA-TTACTCACTTTAAATGGTTTTATAATCTTACATATGTTTTTAAGTCAAATTTTTT
1 AAAG-CCTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA--TTTT
** * * * *
9516993 TTTCATTTTTGTTTAAAATAGATCATAATTTCATGTTTGCATTAGGAAACATGAAGCGAAAGCCA
63 TTTCATTTTTCATTAAAACAGATCATAATTTGATGTTTGCATTGGGAAACGTGAAGCGAAAGCCA
* * * * **
9517058 TCCATTGACAAGGAAAGTCTATTTATAGTAACTCATACCTTTA
128 TCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCG
* * * * * *
9517101 AAAGCCTTA-TTACTCGCTTGAAGTGGTTTTA-ACT-TTATAAATAATTTTAAATTGATTGTTTT
1 AAAGCC-TAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAAT-TTTT
* *** * * * * *
9517163 TTTATTTTAGGTTAAAACATATCATAATTTGATGTTT--ATCTCAGAAAACGTGAAGTGAAACCC
64 TTCATTTTTCATTAAAACAGATCATAATTTGATGTTTGCAT-T-GGGAAACGTGAAGCGAAAGCC
* ***
9517226 ATGCATTGACAAGAAAAGTTTTTTTATAGTCCAC-CATGCCTTCG
127 ATCCATTGACAAGAAAAGTCCATTTATAGT-CACTCATGCCTTCG
* * * * *
9517270 AAAACGTAGTAACTCACTTTAAATGATTTTATAATCTTATAAATGATTTTAAGTTGAATTGTTTT
1 AAAGCCTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATT-TTTT
* * * ** * **
9517335 TCATTTTTTATTAAAGCAGAT-AGTAA-TTGAATGTTTTTC-TT-GGCCACATGAATTGAAAGCC
65 TCATTTTTCATTAAAACAGATCA-TAATTTG-ATG-TTTGCATTGGGAAACGTGAAGCGAAAGCC
* * * * * * *
9517396 ATCTATTAACATGAAAGGTCAATTTACAGTCACTCATGCCTT-T
127 ATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCG
* * * *
9517439 AAATCCTAGTTACTCGCTTTAAATGATTTTATAATATTATAAATGATTTCAAGTT-AATTGTTTT
1 AAAGCCTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATT-TTTT
** * * * * *
9517503 T-ATTTTTGGTTAAAATAGATCATAATTTGATGTTTGCAATGAGAAACGTGGAGTGAAAG-CATC
65 TCATTTTTCATTAAAACAGATCATAATTTGATGTTTGCATTGGGAAACGTGAAGCGAAAGCCATC
* * ***
9517566 TAGTGACAAGAAAAGTTTGTTTATAGTCACTCATGCCTTC-
130 CATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCG
* * * **
9517606 AAA-CCTTAATTACTCGCTTTAAGTAGTTTTATAA-CATTATAAATGATTTTAAACT-AATTTTT
1 AAAGCC-TAGTTACTCGCTTTAAATGGTTTTATAATC-TTATAAATGATTTTAAGTTGAATTTTT
* * * * *
9517668 TT-ATTTTTTATTAAAACATATCTTAATTTGATGTTTGCATTAGGAAACATGAAGCGAAAGCCAT
64 TTCATTTTTCATTAAAACAGATCATAATTTGATGTTTGCATTGGGAAACGTGAAGCGAAAGCCAT
* * **
9517732 CCATTGATAAGAGAAGTCCATTTATAGTCACTCATGCCTTTA
129 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCG
* * * * *
9517774 AAAGCCTAATTACTAGCTTTAAATGGATTTATAATCTGAT-AATTATTTTTAAGTTGAATTGCTT
1 AAAGCCTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGA-TTTTAAGTTGAATT--TT
** * * * * * * *
9517838 TTT-AGTTTTGGA-TAAAACAAATCATAATTTGTTGTTTACCTTGAGAAACATAAAGCGAAAGCC
63 TTTCA-TTTTTCATTAAAACAGATCATAATTTGATGTTTGCATTGGGAAACGTGAAGCGAAAGCC
* * *
9517901 ATCCATGGATAAGAAAAGTCCATTTACAGTCACTCATGCCTTTCG
127 ATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCC-TTCG
* * * * * * **
9517946 AAAGTCTTGTAACTCGCTCTAAATAGTTTTATAAAT-TTATAAAT-AATTTAAACTGAATTTTTT
1 AAAGCCTAGTTACTCGCTTTAAATGGTTTTAT-AATCTTATAAATGATTTTAAGTTGAA-TTTTT
* * ** * *
9518009 TTCATTTTTCATTGAAATAGATTGTAATTTGATGTTTGCATTGGGAAACGTGAAGTGAAAGCCCT
64 TTCATTTTTCATTAAAACAGATCATAATTTGATGTTTGCATTGGGAAACGTGAAGCGAAAGCCAT
* * *
9518074 CCATTCACAATAAAAGTCCATTTATAGTCACTCATGCCTTTG
129 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCG
* * * *
9518116 AAAGCCTTA-TTACTCG-TATTAAGTGATTTTATAA-CTTTACAAATGATTTTAGGTTGAATTTC
1 AAAGCC-TAGTTACTCGCT-TTAAATGGTTTTATAATC-TTATAAATGATTTTAAGTTGAATTT-
* ** ** * *
9518178 TTTTTATTTTTGGTTAAAACAGATCATAATTTGATGTTTGTC-TCAGGAAATGTGAAGCAAAAGC
62 TTTTCATTTTTCATTAAAACAGATCATAATTTGATGTTTG-CATTGGGAAACGTGAAGCGAAAGC
* * * *
9518242 CATCCATTAATAGGAAAAGTCCATTTATAGTCACTCATACC-TCTG
126 CATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTC-G
** * * * * *
9518287 AAAGCCT-GATTACTCAATTGAAATGGTTATATAATCTAACAAATGATTTTAAGTTAAATTTTTT
1 AAAGCCTAG-TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA-TTTTT
** * * * * * * * * * *
9518351 TTCA-TTTTGGTTAAATCATATCAAAATTGGATTTTTTCCTTGAGAAATGTGAAGCGAAAGCTAT
64 TTCATTTTTCATTAAAACAGATCATAATTTGATGTTTGCATTGGGAAACGTGAAGCGAAAGCCAT
* * * * ** **
9518415 CCATTAACAACAAAAGTTCATTTATAATCACTCACACCTTTA
129 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCG
* * * * ** ** *
9518457 AAAGCCTTGTTGCTCGCTTTAAGTGCTTTTATAA-CTTTATATCTGATTTTAAAATGATTTTTTT
1 AAAGCCTAGTTACTCGCTTTAAATGGTTTTATAATC-TTATAAATGATTTTAAGTTGA--ATTTT
*** * * ** * * *
9518521 TTTCATTTTGGGTTAAAACAGATTATAATTTAATTGTTTGC-TATGTAAAAAGTGTAGCAAAAGC
63 TTTCATTTTTCATTAAAACAGATCATAATTTGA-TGTTTGCAT-TGGGAAACGTGAAGCGAAAGC
* * * * * * * ** *
9518585 TATCCGTTGACAAAAAAAATCTATTTATAGTCATTTACACCTTTG
126 CATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCG
* * * * * *
9518630 ATAGCCTTA-TTACTAGTTTTAAGTGGTTTTATAA-CTT-TGCAAATGATTTTAAATTGCATTTC
1 AAAGCC-TAGTTACTCGCTTTAAATGGTTTTATAATCTTAT--AAATGATTTTAAGTTGAATTT-
* * * * * *
9518692 TTTTCACTTTTCGTTAAAACATATCATAATTTGATATTTGCATTAGGAAACGTGAAGCAAAAGCC
62 TTTTCATTTTTCATTAAAACAGATCATAATTTGATGTTTGCATTGGGAAACGTGAAGCGAAAGCC
* * * *
9518757 ATTCATTCACAAGAAAAGTCCATTTATAGTCACTCATACGTTCG
127 ATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCG
** * * *
9518801 AAAGTATAGATTATTAGCTTTAAATGGTTTTATGATCTTATAAATG-TTTCTAAGTTGAATTATT
1 AAAGCCTAG-TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTT-TAAGTTGAATT-TT
* * *** *
9518865 TTATCAATATTTT--TTACAACAAATCATAATTTGATGTTTATGTTGGGAAACGTGAAG-TAAAG
63 TT-TC-AT-TTTTCATTAAAACAGATCATAATTTGATGTTTGCATTGGGAAACGTGAAGCGAAA-
* * *
9518927 GTCATCCATTGACAAGAAAAGTCCCTTTATAGTCAATCATGCCTTCG
124 GCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCG
* * * * * *
9518974 AAAGCTTTGTTACTCACTTTAAGTGGTTCTATAA-CTTTATAAATGATTTTGAA-TAGAATTTTT
1 AAAGCCTAGTTACTCGCTTTAAATGGTTTTATAATC-TTATAAATGATTTT-AAGTTGAATTTTT
* * * * * * * *
9519037 TATC-GTTTTCCTTAAAACAGATCGTAATTTGATGTTTGGATTAGGAAACCTGAAGTGAAAGTCA
64 T-TCATTTTTCATTAAAACAGATCATAATTTGATGTTTGCATTGGGAAACGTGAAGCGAAAGCCA
* *** *
9519101 TCCATTGACAAGAAAAATCCATTTATAGTCACTCACAACTTCA
128 TCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCG
* * * *
9519144 AAAGCTTAAG-TACTCGATTTAAATAGTTTTATAATCTTATAAATGCTTTTAAGTTGAATTTTTT
1 AAAGCCT-AGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTT
* * ** * * ** * * * *
9519208 CCTTTTTTGGTTAAACCAAATCATTGTTGGATGTTTGCCTTGAGAAATGTGAAGCGAAAGCCATC
65 TCATTTTTCATTAAAACAGATCATAATTTGATGTTTGCATTGGGAAACGTGAAGCGAAAGCCATC
* *
9519273 CATTGACAAGAAAAATCCATTTATAGTCACTCATGCCTTCA
130 CATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCG
** * * * *
9519314 AAAGCCTTCTTACACGCTTTTAGTGGTTTAATAAGT-TTATAAAT-ACTTTTTAA-TTGAAATTT
1 AAAGCCTAGTTACTCGCTTTAAATGGTTTTATAA-TCTTATAAATGA--TTTTAAGTTG-AATTT
* *
9519376 TTTTCA--TTTCAAGTTAAAACAGATCATAATTTGATGTTTGGATTAGGAAACGTGAAGCGAAAG
62 TTTTCATTTTTC-A-TTAAAACAGATCATAATTTGATGTTTGCATTGGGAAACGTGAAGCGAAAG
** * * *
9519439 CCATTTATTGACAAGAGAAGTCCGTTTATAGTCACTCACAG-CTTCG
125 CCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCA-TGCCTTCG
* * * * * *
9519485 AAAGCTTAGGTACTTGATTTAAATAGTTTTATAATCTTATAAATGCTTTTAAGTTGAATTAATTT
1 AAAGCCTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATT--TTT
* * * * *
9519550 TTC-TTTTTTAGTTAAAACAGATCATAATTGGATGTTTGCCTTGAGAAACATGAAGCGAAAGCCA
64 TTCATTTTTCA-TTAAAACAGATCATAATTTGATGTTTGCATTGGGAAACGTGAAGCGAAAGCCA
*
9519614 TCCATTGACAAGAAAAGTCAATTTATAGTCACTCATGCCTTCG
128 TCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCG
** ** * * * * *
9519657 AAAGCCTTCTTACAAGCTTTTAGTGGTTTAATAAGT-TTATAAATGTTTTTTAA-TTAAAATTTT
1 AAAGCCTAGTTACTCGCTTTAAATGGTTTTATAA-TCTTATAAATG-ATTTTAAGTT-GAATTTT
* * * * * *
9519720 TTTCA--TTTCAAGTTAAAACATATCATAATTTGCTATTTGTATTAGGAAACATGAAGCGAAAGC
63 TTTCATTTTTC-A-TTAAAACAGATCATAATTTGATGTTTGCATTGGGAAACGTGAAGCGAAAGC
* * *
9519783 CATTCATTGATAAGAAAAGTCCATTTATAGTCACTCACAG-CTTCG
126 CATCCATTGACAAGAAAAGTCCATTTATAGTCACTCA-TGCCTTCG
* * * * * *
9519828 AAAGCTTAGGTACTTGATTTAAATAGTTTTATAATCTTATAAATGCTTTTAAGTTGAATTTGTTT
1 AAAGCCTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTT-TTT
* * * * * * * *
9519893 TCTTTTTTGATTAAAATAGATCATAATTGGATGTTTTCCTTGAGAAACATGAAGCGAAAGCCATC
65 TCATTTTTCATTAAAACAGATCATAATTTGATGTTTGCATTGGGAAACGTGAAGCGAAAGCCATC
*
9519958 CATTGACAGGAAAAGTCCATTTATAGTCACTCATGCCTTCG
130 CATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCG
* * * * * * * **
9519999 GAAGCCTTGTTACACGCTTTTAGTGGTTTAATAA-CTTTATAACTAT-TTTTTAA-TTGAAAGTT
1 AAAGCCTAGTTACTCGCTTTAAATGGTTTTATAATC-TTATAA--ATGATTTTAAGTTGAATTTT
* * * *
9520061 TTTCA--TTTCAAGTTAAAACAAATCATAATTTGATGTTTGGATTAGAAAACGTGAAGCGAAAGC
63 TTTCATTTTTC-A-TTAAAACAGATCATAATTTGATGTTTGCATTGGGAAACGTGAAGCGAAAGC
* * *
9520124 CATTCATTGACAA-AAAAGTCCATTTATAGTCACCCATACCTTCG
126 CATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCG
* * ** * *
9520168 AAAGCCTTA-TTACTCGATTCATGTGGTTTTATAA-CTTTATAAATAATTTTAAATTGAATTTGT
1 AAAGCC-TAGTTACTCGCTTTAAATGGTTTTATAATC-TTATAAATGATTTTAAGTTGAATTT-T
* * * ** *
9520231 TCTT-ATCTTTCATTCAAACATATCATAATTTGATGTTTGCATTCAGAAACATGAAGCGAAAGCC
63 T-TTCATTTTTCATTAAAACAGATCATAATTTGATGTTTGCATTGGGAAACGTGAAGCGAAAGCC
* * * *
9520295 ATCCACTGACAAGAAAAGTCCATTTATATTCATTCCTGCCTTCG
127 ATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCG
* * *
9520339 AAAGCATAGTTACTCAG-TTTAAATGGTTTTATAATCTTATAAATAATTTTAAATTGAATTTTTT
1 AAAGCCTAGTTACTC-GCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTT
** * * * * *** * * * * *
9520403 TACATTTTTGGTTAAAATAGTTCATAATTAGAGGTTTGTC-TCAAGAAACATTAAACGAGAGCCG
65 T-CATTTTTCATTAAAACAGATCATAATTTGATGTTTG-CATTGGGAAACGTGAAGCGAAAGCCA
*** * * *
9520467 TCCATTGACAAGAAAAGTTTGTTTGTAGTCACTCGTGCCTTTG
128 TCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCG
* * * *
9520510 AAAGTCTAGTTACTCACTTAAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTAT
1 AAAGCCTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTT
* * * * *
9520575 CATTTTTCATTAAAACAGATCATAGTTTAATGTTAGCATTGGGAAACATGAAGCGAAAGCCATTC
66 CATTTTTCATTAAAACAGATCATAATTTGATGTTTGCATTGGGAAACGTGAAGCGAAAGCCATCC
* *
9520640 ATTGACAAGCAAAGTCTATTTATAGTCACTCATGCCTTCG
131 ATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCG
* * * * * * *
9520680 AAAGCCGAATTACTCACTTTAAATGGTTCTATAATCTCATAAATGATTGTAGGTTGAATTTTTTT
1 AAAGCCTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTT
** ** ** * * * * *
9520745 ACATTTTTTGTTAAAAGGGATCATAATCGGATGTTTGTC-TTGAGAAACATTAAACGAAAGCTAT
66 -CATTTTTCATTAAAACAGATCATAATTTGATGTTTG-CATTGGGAAACGTGAAGCGAAAGCCAT
* * * * * *
9520809 CCATTAACAAGAAAACTTCATCTATAGTCACTCGTACCTTCG
129 CCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCG
* * * * *
9520851 ATAGCTTAGTTACTCTCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGCTGAATTTTTAT
1 AAAGCCTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTT
* * * * *
9520916 CATATTTCATTAAAACATATCGTAA-TTGATGTTTGCATTGGGAAACGTGAAGCGCAAGCCATTC
66 CATTTTTCATTAAAACAGATCATAATTTGATGTTTGCATTGGGAAACGTGAAGCGAAAGCCATCC
* * * * *
9520980 ATTTACAAGAAAAGTCCATTTATCGTCAGTCATACCTTCA
131 ATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCG
* * *
9521020 AAAGCCTAGTTACTCGCTTTAAATAGTTTTCTAATCTTATAAATGTTTTTAAGTTGAATTTTTTT
1 AAAGCCTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAA--TTTTT
* * * * * * *
9521085 TTCA-TTCTCATTTAAAACATATCATAATTTGATGTTTTGCCTTGGAAAACATGACA-CGAAGGT
64 TTCATTTTTCA-TTAAAACAGATCATAATTTGATG-TTTGCATTGGGAAACGTGA-AGCGAAAGC
* * *
9521148 CACCCATTGGCAAGAAAAGTCCATTTATAATCACTCATGCCTT
126 CATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTT
9521191 TCAAAGCTTT
Statistics
Matches: 5123, Mismatches: 1116, Indels: 452
0.77 0.17 0.07
Matches are distributed among these distances:
158 18 0.00
159 82 0.02
160 17 0.00
161 1 0.00
162 3 0.00
163 4 0.00
164 5 0.00
165 27 0.01
166 169 0.03
167 155 0.03
168 89 0.02
169 464 0.09
170 1082 0.21
171 2118 0.41
172 478 0.09
173 397 0.08
174 10 0.00
175 4 0.00
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (170 bp):
AAAGCCTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTT
CATTTTTCATTAAAACAGATCATAATTTGATGTTTGCATTGGGAAACGTGAAGCGAAAGCCATCC
ATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCG
Found at i:9516897 original size:21 final size:21
Alignment explanation
Indices: 9516873--9516913 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
9516863 TTGGGAACGT
9516873 GAAGCAAAAGCCATTCATAGA
1 GAAGCAAAAGCCATTCATAGA
*
9516894 GAAGCAAAAGCCATTTATAG
1 GAAGCAAAAGCCATTCATAG
9516914 TCACTCATGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.46, C:0.17, G:0.20, T:0.17
Consensus pattern (21 bp):
GAAGCAAAAGCCATTCATAGA
Found at i:9524279 original size:10 final size:9
Alignment explanation
Indices: 9524264--9524331 Score: 86
Period size: 10 Copynumber: 7.4 Consensus size: 9
9524254 ATCTTGTTAT
9524264 TTTCTTTTCC
1 TTTCTTTT-C
9524274 TTTCTTTTC
1 TTTCTTTTC
9524283 TTTCTTTTC
1 TTTCTTTTC
*
9524292 TTTTCTCTTC
1 -TTTCTTTTC
9524302 TTTTCTTTTC
1 -TTTCTTTTC
9524312 TTTC-TTTC
1 TTTCTTTTC
9524320 TTTC-TTTC
1 TTTCTTTTC
9524328 TTTC
1 TTTC
9524332 CCACCGTCCA
Statistics
Matches: 55, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
8 16 0.29
9 14 0.25
10 25 0.45
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (9 bp):
TTTCTTTTC
Found at i:9524286 original size:4 final size:4
Alignment explanation
Indices: 9524273--9524331 Score: 64
Period size: 4 Copynumber: 13.2 Consensus size: 4
9524263 TTTTCTTTTC
9524273 CTTT CTTTT CTTT CTTTT CTTTT CTCTT CTTTT CTTTT CTTT CTTT CTTT
1 CTTT C-TTT CTTT C-TTT C-TTT CT-TT C-TTT C-TTT CTTT CTTT CTTT
9524323 CTTT CTTT C
1 CTTT CTTT C
9524332 CCACCGTCCA
Statistics
Matches: 51, Mismatches: 0, Indels: 8
0.86 0.00 0.14
Matches are distributed among these distances:
4 26 0.51
5 24 0.47
6 1 0.02
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (4 bp):
CTTT
Found at i:9524329 original size:29 final size:29
Alignment explanation
Indices: 9524248--9524330 Score: 100
Period size: 29 Copynumber: 2.9 Consensus size: 29
9524238 CCATGTCCAA
* * * *
9524248 TTTTCTATCTTGTTATTTTCTTTTCCTTTC
1 TTTTCTTTCTT-TTCTTTTCTCTTCTTTTC
9524278 TTTTCTTTCTTTTCTTTTCTCTTCTTTTC
1 TTTTCTTTCTTTTCTTTTCTCTTCTTTTC
9524307 TTTTCTTTC-TTTC-TTTCT-TTCTTT
1 TTTTCTTTCTTTTCTTTTCTCTTCTTT
9524331 CCCACCGTCC
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
26 6 0.12
27 5 0.10
28 4 0.08
29 24 0.49
30 10 0.20
ACGTcount: A:0.02, C:0.22, G:0.01, T:0.75
Consensus pattern (29 bp):
TTTTCTTTCTTTTCTTTTCTCTTCTTTTC
Found at i:9525621 original size:171 final size:170
Alignment explanation
Indices: 9524797--9527995 Score: 2886
Period size: 171 Copynumber: 18.8 Consensus size: 170
9524787 GAGCTTGACA
* * * * * *
9524797 TTATAAATGATTTTAAATTGAATTTTTTTTTATTTTTAAATAAAAAAAATTC-GAATTTGATGTT
1 TTATAAATGATTTTAAATTGAATTTTTTTTCATTTTTCATTAAAATAGA-TCATAATTTGATGTT
* * * *
9524861 TGCATTAGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCACG
65 TGCATTGGGAAACGTGAAGC-AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * *
9524926 GC-TTCAAAG-CTTAGTTACTCGCTTTAAATAGTTTTATAA-T
129 CCTTTGAAAGCCTT-GTTACTCTCTTTAAGTGGTTTTATAACT
* * ** ** * **
9524966 CTTATAAATGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACGGACCATAATCAGATGTT
1 -TTATAAATGATTTTAAATTGAATTTTTTTTCATTTTTCATTAAAATAGATCATAATTTGATGTT
*** * * * * *
9525031 TGTC-TAAAGAAACGTAAAACGAAAGCTATCCATTGACAAGAAAAGTTCATTTATAGTC-TTCAT
65 TG-CATTGGGAAACGTGAAGC-AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAT
*
9525094 GCCTTTGAAAG-CTTAGTTACT-TGCTTTAAATGGTTTTATAA-T
128 GCCTTTGAAAGCCTT-GTTACTCT-CTTTAAGTGGTTTTATAACT
* * * * * * *
9525136 CTTATAAATGATTTT-AAGT-AAATTTTTATCA-TTTT--TTAAAACATATCGTAATTTAATGTT
1 -TTATAAATGATTTTAAATTGAATTTTTTTTCATTTTTCATTAAAATAGATCATAATTTGATGTT
* * *
9525196 TGCATTGGGAAACATGAA-CGAAAGCCA-CTCATTGACAAGAAAAGTCCATTTATAGTCACCCTT
65 TGCATTGGGAAACGTGAAGC-AAAGCCATC-CATTGACAAGAAAAGTCCATTTATAGTCACTCAT
* * * * * * * *
9525259 ACTTTTGAAAGCCTAGTTGCTCACTCTAAATGGTTTTGTAAAC-
128 GCCTTTGAAAGCCTTGTTACTCTCTTTAAGTGGTTTTAT-AACT
* * * *
9525302 TTATAAATGTTTTTAAGTTAAATTCTTTTTTCA-TTTTCATTTAAAACAGATCATAATTTGATGT
1 TTATAAATGATTTTAAATTGAATT-TTTTTTCATTTTTCA-TTAAAATAGATCATAATTTGATGT
* * ** * *
9525366 TTGTC-TTCGAAAACCCGACGCAAAGGCCATCCATTGACAAGAAAAGTCCATTTATACTCACTCA
64 TTG-CATTGGGAAACGTGAAGCAAA-GCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCA
* ** * *
9525430 TGCCTTCGAAAGATTTGTTACTCTCTTTAAGTGGTTTAACAACT
127 TGCCTTTGAAAGCCTTGTTACTCTCTTTAAGTGGTTTTATAACT
* * ** * *
9525474 TTATAAATGATTTTGAATTGAATTTTGTTTTCATTTTTCAATAAAATAGATTGTAATTTGTTGTA
1 TTATAAATGATTTTAAATTGAATTTT-TTTTCATTTTTCATTAAAATAGATCATAATTTGATGTT
* * * *
9525539 TGCATTGGGAAACGTGAAGCATAA-CCATCCATTGATAAGAAAAGTCCATTGATAGTCACTAATA
65 TGCATTGGGAAACGTGAAGCA-AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * *
9525603 CCTATGAAAGTCTTGTTACTCTCTTTAAGTAGTTTTATAACT
129 CCTTTGAAAGCCTTGTTACTCTCTTTAAGTGGTTTTATAACT
* * * *
9525645 TTATAAAT-ACTTTTAAATTGAATTCTTTTTACATTTTTTATTAAAATTGACCATAATTTGATGT
1 TTATAAATGA-TTTTAAATTGAATT-TTTTTTCATTTTTCATTAAAATAGATCATAATTTGATGT
* * * * * * * * * **
9525709 TTACATTGGGAAATGTGAAGCGAAATCCATTCATTCAAAAG-AAACTCTATTTATAATTGCTCAT
64 TTGCATTGGGAAACGTGAAGC-AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAT
* * * *
9525773 ACCTTTGAAAGCCTTGTTACTCACTTGAAGTAGTTTTATAACT
128 GCCTTTGAAAGCCTTGTTACTCTCTTTAAGTGGTTTTATAACT
* * *** * *
9525816 TTATAAATGATTTTAAATAGAATGTTTTTTCATTTTAGGTTAAAAGATATCATAATTTGATGTTT
1 TTATAAATGATTTTAAATTGAATTTTTTTTCATTTTTCATTAAAATAGATCATAATTTGATGTTT
*** * * *
9525881 GCATCAAGAAACGTTAAGCGAAAGCCATCCATTGATAA-AAGAAGTCTATTTATAGTCAC-CTAT
66 GCATTGGGAAACGTGAAGC-AAAGCCATCCATTGACAAGAA-AAGTCCATTTATAGTCACTC-AT
* * *
9525944 G-C-TTGAGGAAGCCTTGTTACT-TGCTTGAAGTGATTTTGTAACT
128 GCCTTTGA--AAGCCTTGTTACTCT-CTTTAAGTGGTTTTATAACT
* * * * *
9525987 TTATAAATAATTTTAAATTGAATTTGTTTTCATTTTTCCTTAAAATAGGTTATAATTTGATGTTT
1 TTATAAATGATTTTAAATTGAATTTTTTTTCATTTTTCATTAAAATAGATCATAATTTGATGTTT
* * * * *
9526052 GCATTGGGAAACGTGAAGCAAAAGCCATCAATTGATAAGAAAAATCCATTTATAATAACTCATGC
66 GCATTGGGAAACGTGAAGC-AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
* *
9526117 CTATGAAAGCCTTGTTTCT-TGCTTTAAGTGGTTTTATAACT
130 CTTTGAAAGCCTTGTTACTCT-CTTTAAGTGGTTTTATAACT
* *
9526158 TTATAAATGCTTTTAAATT-AATATTTTTTTCATTTTTCATTAAAACAGATCATAATTTGATGTT
1 TTATAAATGATTTTAAATTGAAT-TTTTTTTCATTTTTCATTAAAATAGATCATAATTTGATGTT
* ** * * * * * * *
9526222 TACATTGGGAAATATGAAGTGAAATCCATCCGTTGAGAAGAAAACTCCATTTACAGTCACTTATG
65 TGCATTGGGAAACGTGAAG-CAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * **
9526287 CCTTTGAAAGCCTTATTACTCGCTCGAAGTGGTTTTATAACT
129 CCTTTGAAAGCCTTGTTACTCTCTTTAAGTGGTTTTATAACT
* ** * * * *
9526329 GTATAAATGATTTTAAACAGAATTTCTTTTCATTTTACCTTAAAAGAGATCATAATTTGATGTTT
1 TTATAAATGATTTTAAATTGAATTTTTTTTCATTTTTCATTAAAATAGATCATAATTTGATGTTT
*** * *
9526394 GCATCAAGAAACGTGAAGCGAAAGCCACCCATTGACAAGAAAAGTCCATTTATAGTCACCCATG-
66 GCATTGGGAAACGTGAAGC-AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
*
9526458 CTTTCGAAAGCCTTGTTACT-TGCTTTAAGTGGTTTTGTAACT
130 CTTT-GAAAGCCTTGTTACTCT-CTTTAAGTGGTTTTATAACT
* *
9526500 TTATAAATGATTTTAAATTGAATTTGTTTTCATTTTTC-TGTAAAATAGATCATCATTTGATGTT
1 TTATAAATGATTTTAAATTGAATTTTTTTTCATTTTTCAT-TAAAATAGATCATAATTTGATGTT
* * * * * *
9526564 TTCATTAGGAAACATGAAGCAAAAGCTATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATT
65 TGCATTGGGAAACGTGAAGC-AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
** * * * *
9526629 CCTACGAAAGCCTTATTGCTCACTTTAAGTGGTTTAATAACT
129 CCTTTGAAAGCCTTGTTACTCTCTTTAAGTGGTTTTATAACT
* * * *
9526671 TTATAAATGCTTTTGAATTGAATTTCTTTTCATTTTTCAATAAAATAGATCATAATTTGATGTTT
1 TTATAAATGATTTTAAATTGAATTTTTTTTCATTTTTCATTAAAATAGATCATAATTTGATGTTT
* * * * * * * * * *
9526736 GCATTGGGAAATGTCAAGTGAAATCCATCCATTGAGAGAAAAAACTCCATTTACAATCACTCACG
66 GCATTGGGAAACGTGAAG-CAAAGCCATCCATTGACA-AGAAAAGTCCATTTATAGTCACTCATG
* * * *
9526801 CCTTTGAAAGCCTTGTTCCTCGCTTGAAGTGGTTTTATAATT
129 CCTTTGAAAGCCTTGTTACTCTCTTTAAGTGGTTTTATAACT
* ** * *** * *
9526843 TTGTAAATGATTTTAAACAG-ATATTTTTTCATTTTAGGTTAAAAGAGATCATAATTGGATG-TT
1 TTATAAATGATTTTAAATTGAATTTTTTTTCATTTTTCATTAAAATAGATCATAATTTGATGTTT
***
9526906 GACATCAAGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
66 G-CATTGGGAAACGTGAAGC-AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * *
9526971 CCTATAAAAGCCTTGTTACT-TCCTTTAAGTGGCTTTGTAACT
129 CCTTTGAAAGCCTTGTTACTCT-CTTTAAGTGGTTTTATAACT
* *
9527013 TTATAAATGATTTTAAATTGAATTTTTTTTCATTTCTCACTAAAATAGATCATAATTTGATGTTT
1 TTATAAATGATTTTAAATTGAATTTTTTTTCATTTTTCATTAAAATAGATCATAATTTGATGTTT
* * * * *
9527078 GCATTGGGAAACATGAAGCGAAAGCCATCCATTGACATGAAAAGTCTATTTATAGTCACTTATAC
66 GCATTGGGAAACGTGAAGC-AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
** * * *
9527143 CTACGAAAGCCTTGTCACTCGCTATAAGTGGTTTTATAACT
130 CTTTGAAAGCCTTGTTACTCTCTTTAAGTGGTTTTATAACT
** * *
9527184 TTATAAATGCGTTTAAATTGAA-TTGTTTTCATTTCTCATTAAAATAGATCATAATTTGATGTTT
1 TTATAAATGATTTTAAATTGAATTTTTTTTCATTTTTCATTAAAATAGATCATAATTTGATGTTT
* * * ** * ** * * * * *
9527248 TCATAGGAAAAAATGAAGCGAAATCCATCTGTTGAGAAAAAAACTCTATTTATAGTCACTTATGC
66 GCATTGGGAAACGTGAAGC-AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
* *
9527313 CTTTGAAAGCCTTGTTACTCGCTTGAAGTGGTTTTATAACT
130 CTTTGAAAGCCTTGTTACTCTCTTTAAGTGGTTTTATAACT
* ** * * *** *
9527354 TTATAAATGACTTTAAACAGGATTGTTTTTCATTTTAGGTTAAAAAAGATCATAATTTGATGTTT
1 TTATAAATGATTTTAAATTGAATTTTTTTTCATTTTTCATTAAAATAGATCATAATTTGATGTTT
*** * *
9527419 GCATCAAGAAACGTGAAGCAAAAGCCATCCATTGACAAAAAAAGTCCATTTATAGTCA-TCAATA
66 GCATTGGGAAACGTGAAGC-AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTC-ATG
* * * *
9527483 CCTTCGAAAGCCTTATTACT-TCCTTTAAGTGGCTTTGTAACT
129 CCTTTGAAAGCCTTGTTACTCT-CTTTAAGTGGTTTTATAACT
* * * * * *
9527525 TTATAACTAATTTTAAATTGAATTTTTTCTTCATTTGTCATCAAAACATATCATAATTTGATGTT
1 TTATAAATGATTTTAAATTGAATTTTTT-TTCATTTTTCATTAAAATAGATCATAATTTGATGTT
* * * * * * * *
9527590 TGCATTGGGAAATGTGAAGTGAAATCCATCCGTTGAGAAGAAAACTCCATTTACAGTCACTCATA
65 TGCATTGGGAAACGTGAAG-CAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* *
9527655 CCTTTGAAAGCCTTGTTACTC-CATTGAAATGGTTTTATAACT
129 CCTTTGAAAGCCTTGTTACTCTC-TTTAAGTGGTTTTATAACT
* * * * * * *
9527697 TTATAAATGATTTTATATTGAA-TTTTTTTCA-TTTTAAGTTAAAAGATATCATTATTTTATATT
1 TTATAAATGATTTTAAATTGAATTTTTTTTCATTTTTCA-TTAAAATAGATCATAATTTGATGTT
* * * * *
9527760 TGCATTGGGAAACGTAAAGCGAAA-CGATTCATTGACAAGAAAAGTCTATTTATAGTCAATCATG
65 TGCATTGGGAAACGTGAAGC-AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * ** *
9527824 CCTTCGAAAGCCTAGTTAGTCAGTTTAAATGGTTTTATAATCT
129 CCTTTGAAAGCCTTGTTACTCTCTTTAAGTGGTTTTATAA-CT
* * * ** * *
9527867 TGA-AAATGTTTTTAAGTTGAATTTTTTTTTCATTTTTGTTTGAAACAGATCATAATTTGAT-TT
1 TTATAAATGATTTTAAATTGAA-TTTTTTTTCATTTTTCATTAAAATAGATCATAATTTGATGTT
* * ** * * * * *
9527930 TGCCTTGGGAAACATGGTGCGAAGGTCACCCATTGACAAGAAAAGTTCGTTTATAGTCACTCATG
65 TGCATTGGGAAACGTGAAGC-AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
9527995 C
129 C
9527996 TGTAAAACTC
Statistics
Matches: 2454, Mismatches: 499, Indels: 151
0.79 0.16 0.05
Matches are distributed among these distances:
163 1 0.00
164 36 0.01
165 72 0.03
166 6 0.00
167 7 0.00
168 20 0.01
169 96 0.04
170 508 0.21
171 1340 0.55
172 354 0.14
173 14 0.01
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.38
Consensus pattern (170 bp):
TTATAAATGATTTTAAATTGAATTTTTTTTCATTTTTCATTAAAATAGATCATAATTTGATGTTT
GCATTGGGAAACGTGAAGCAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCC
TTTGAAAGCCTTGTTACTCTCTTTAAGTGGTTTTATAACT
Found at i:9535211 original size:512 final size:508
Alignment explanation
Indices: 9533734--9537725 Score: 3573
Period size: 512 Copynumber: 7.8 Consensus size: 508
9533724 GGTCGTGACA
** * * * *
9533734 CATGCCTTTGAAAGTTTTGTTACTGGATTGAAGCGGTTTTATAACTTTATAAATGATTTTAAATT
1 CATGCCTTTGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTATAAATGATTTTAAATT
* ** * *
9533799 GAATTTGTTTTCATTTTTCCTTAAAATAGATCATAATTTAATGTTTGCATTGGGAGACATGAAGC
66 -AATTTTTTTTCATTTTTGGTTAAAATAGATCATAATTTGATGTTTGCATTGGGAAACATGAAGC
* * ** * * *
9533864 AAAAGCCATCAATTGACAAGAAAAGTTTA-TTATAGTCAGTCATGCCTTCGAAAACCTAGTTACT
130 GAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACT
* *
9533928 CGCTTTAAATGGTTTTATAATCTTATAAATGTTTTTAAGTTGAAATTTGTTTTCATTTTT-ATTT
195 CGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTG-AATTTGTTTTCATTTTTGA-TG
* *** * * *
9533992 AAAACAGATCATAATTTGATGTTTTGCCTTGGGAATTGTGACGCGAAAGTCACCCATTGACAAGA
258 AAAACAGATCATAATTTGATG-TTTGCATT-GGAAACATGA-GCAAAAGCCATCCATTGACAAGA
* * * * * *
9534057 AAAGTCCATTTATAGTCACTCATGCCTTCGAAAGTC-TAGGTCCTTGCTTTAAATGGTTTTATA-
320 AAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTA-TTAC-TCCTTTAAGTGGTTTTATAC
* * * ** * * *
9534120 ATCTTATAAATGATTTTCAGTTGAATTTGTTTTCATTTTTGGTTCAAACAAAT-GATAAGTTGAT
383 A--TTATAAATGATTTTAAATTGAATTTATTTTCATTTTTCATTGAAACAGATCG-TAATTTGAT
* * * * ** * * *
9534184 GTCTACATTGGGAAACATGAATC-AAGAGCCATCTGTTGAGAAGAAAAGTCTATTTACAGTCACT
445 GTTTGCATTGGGAAACGTGAAGCGAA-AGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACT
* * * * ** * *
9534248 GATGCCTTCGAAAGCCTTATTACTTC-ATTTAAGTTATTTTGTAACTATATAAATGATTTTAAAT
1 CATGCCTTTGAAAGCCTTGTTAC-TCGCTTTAAGTGGTTTTATAACTTTATAAATGATTTTAAAT
* ** *** * * *
9534312 TAAATTTATTCACATTTTCCATTAGAATAGATCGTAATTTGATATTTGCATTGGGAAACATGAAG
65 T-AATTTTTTTTCATTTTTGGTTAAAATAGATCATAATTTGATGTTTGCATTGGGAAACATGAAG
* ** * * * *
9534377 CAAAAGCCATCCATTGACAAGAAAAGTCTTTTTATAATCAATCATGCCTTTGAAAGCCTAGTTAC
129 CGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTAC
* * * * * * *
9534442 TCACTTGAAATGCTTTTATAATCTCATAAGTGATTTTAAGTTGAATTTGTTTTCATTTTTGGTTA
194 TCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTGTTTTCATTTTTGATGA
* * * * *
9534507 ACACAGATCATAATTGGATATTTGTC-TTGGGAAACATGAAGCAAAAGCCATCAATTGACAATAA
259 AAACAGATCATAATTTGATGTTTG-CATT-GGAAACATG-AGCAAAAGCCATCCATTGACAAGAA
* * ** * * *
9534571 AAGTTCATGTATAGTCACTCATGCCTTTGAATGCCTTGTTACTCGCTTTAAATGGTTTTATGATC
321 AAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTC-CTTTAAGTGGTTTTAT-A-C
* * * ** * **
9534636 -TTATAAATGATTTTCAGTTGAATTTGTTTTCATTTTTGGTTGAAACAGATCATAGGTTGATGTT
383 ATTATAAATGATTTTAAATTGAATTTATTTTCATTTTTCATTGAAACAGATCGTAATTTGATGTT
* * **
9534700 TGCATTGGGAAATGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATTGTTGCT
448 TGCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACT
* * * *
9534761 CATACCTTCGAAAGCTTTGTTACTCGCTTTAAGTGGTTTTATAACTTTATAAATGATTTTAAACT
1 CATGCCTTTGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTATAAATGATTTTAAATT
* * * * * * *
9534826 AATCTTTTTTTTCCTTTTAGGTTAAAAGAGATCATAATTTGATATTTGCATCGAGAAACATGATG
66 AA--TTTTTTTTCATTTTTGGTTAAAATAGATCATAATTTGATGTTTGCATTGGGAAACATGAAG
* * * *
9534891 CGAAAGCCAGCCATTGATAA-AACAA-TCAATTTATAGTCACTGATGCCTTCGAAAGCCTTGTTA
129 CGAAAGCCATCCATTGACAAGAA-AAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTA
* * * * * *
9534954 CTCACTTTAAGTGATTTTATAA-CTTTATAAATGATTGTAAGTAGAATTT-TTTTCATTTTTCAT
193 CTCGCTTTAAATGGTTTTATAATC-TTATAAATGATTTTAAGTTGAATTTGTTTTCATTTTTGAT
** * * * *** *
9535017 GAAAAGGGATCACAATTTGATATTTGCATTGAGAAACATGAGTCAAAAGCTATTTGTTGAGAAGA
257 GAAAACAGATCATAATTTGATGTTTGCATTG-GAAACATGAG-CAAAAGCCATCCATTGACAAGA
* * *
9535082 AAAGTCCAGTTATAGTCACTCATGCCTTTAAAAGCCTTATTACTCCATTTAAGTGGTTTTGTAGC
320 AAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCC-TTTAAGTGGTTTTATA-C
* *
9535147 ATTATAAATGATTTTAAATTGAATTTATTTACATTTTTCATTGAAATAGATCGTAATTTGATGTT
383 ATTATAAATGATTTTAAATTGAATTTATTTTCATTTTTCATTGAAACAGATCGTAATTTGATGTT
** * * * * *
9535212 CACATTGGGAAACATGAAGCGAAGGCCATCTATTGACAAGAAAAGTCCATTTATAATCAAT
448 TGCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACT
* * * * * *
9535273 CATGCCTTTAAAAG-CTTAGTTACTCACTTGAAATGCTTTTATAA-TCTCATAAATGATTTTAAG
1 CATGCCTTTGAAAGCCTT-GTTACTCGCTTTAAGTGGTTTTATAACT-TTATAAATGATTTTAA-
* * * * * * * *
9535336 CTGAATTTGTTTACATTTTTGGTTAAAACAGATCATAATTGGGTGTTTGCCTTGGGAAACATGAA
63 ATTAATTTTTTTTCATTTTTGGTTAAAATAGATCATAATTTGATGTTTGCATTGGGAAACATGAA
* * ** * * * *
9535401 GTGAAAGCAATTGATTGACAAGAAAAGTCCATTTACAATCATTGATGCCTTCGAAAGCCTTGTTA
128 GCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTA
* * ** * *
9535466 CTCGCTTTAAATTGTTTTATAAACTTATAAATGATTTTTTGTTGAATTTGTTTT-TTTTTTGGTT
193 CTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTGTTTTCATTTTT-GAT
* * * * * *
9535530 G-AAACAGATCATAAGTTGATGTTTGCATTAGGAAACGTAAAGCGAGAGCCATCCATGGACAAGA
257 GAAAACAGATCATAATTTGATGTTTGCATT-GGAAACAT-GAGCAAAAGCCATCCATTGACAAGA
* *
9535594 AAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCC-TAGTTACTCAC-TTAAATGGTTTTATA-
320 AAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTA-TTACTC-CTTTAAGTGGTTTTATAC
* *** * * *
9535656 ATCTCATTAATGATTTTAAAACAAATTTATTTTCATTTTT-AGTTTAAACAGATCATAATTGGAT
383 AT-T-ATAAATGATTTTAAATTGAATTTATTTTCATTTTTCA-TTGAAACAGATCGTAATTTGAT
* * * * * * * *
9535720 GTTTGC-CTCGTAGAACGTGAAGTGAAAGCCATCGATTGACAAGAAAAGTCCATTAATTGACACT
445 GTTTGCATTGGGA-AACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACT
* * * *
9535784 AATACCTTTAAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTATAAATGATTTTAAACT
1 CATGCCTTTGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTATAAATGATTTTAAATT
* * * * * ** *
9535849 GATCTTTTTTTCATTTTAGGATAAAAGAGATCATAATCTGATGTTTGCATCAGGAAACATGAAGT
66 AAT-TTTTTTTCATTTTTGGTTAAAATAGATCATAATTTGATGTTTGCATTGGGAAACATGAAGC
* * * *
9535914 GAAAGCCATCCATTGATAA-AATAAATCCATTTATAGTCACCCATGCCTTTGAAAG-CTTGTTAC
130 GAAAGCCATCCATTGACAAGAA-AAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTAC
* * * * *
9535977 TCGCTTTAAGTGATTTTATAA-CTTTATAAATGATTTTAAATAGAATTTGTTTTTCATTTTTCAT
194 TCGCTTTAAATGGTTTTATAATC-TTATAAATGATTTTAAGTTGAATTTG-TTTTCATTTTTGAT
** * ** * *
9536041 GAAAAGGGATCACAATTTGATGTTTGCATTGGAAAACATGAGTCAAAAGCCATCCGCTAAGAAGA
257 GAAAACAGATCATAATTTGATGTTTGCATTGG-AAACATGAG-CAAAAGCCATCCATTGACAAGA
* * * *
9536106 AAAGTCCATTTACAG-CTACTCATGCCTTTAAAAACCTTATTACTCCATTTAAGTGGTTTTGTAG
320 AAAGTCCATTTATAGTC-ACTCATGCCTTCAAAAGCCTTATTACTCC-TTTAAGTGGTTTTATA-
** * *
9536170 TGTTATAAATGATTTTAAATTGAATTTATTTACATTTTTCATTGAAATAGATCGTAATTTGATGT
382 CATTATAAATGATTTTAAATTGAATTTATTTTCATTTTTCATTGAAACAGATCGTAATTTGATG-
* * * *
9536235 TTTGCATTGGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAATCAAT
446 TTTGCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACT
* * * * ** * ** * *
9536298 CATGTCGTCGAAAGCCTAGTTACTTACTTTAAATACTTTTATAA-TCTCATAAATGATTTTAAGT
1 CATGCCTTTGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT-TTATAAATGATTTTAAAT
* * * * *
9536362 TGAATTTGTTTTCATTTTTAGCTAAAATAGATCATAATTGGATGTTTGCCTTGGGAAACATGAAG
65 T-AATTTTTTTTCATTTTTGGTTAAAATAGATCATAATTTGATGTTTGCATTGGGAAACATGAAG
* * * * * * * * *
9536427 TGAAAGCCATCTATTCACAAGTAAAGTCCATTTGTAGTTATTCAAGCCTTTGGAAA-CCTTGTTA
129 CGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCC-TTCGAAAGCCTTGTTA
* *
9536491 CTCGCTTTAAATGGTTTTATAATCTTATAAATCG-TTTTTAGATGAA-TTGTTTTCATTTTTGAT
193 CTCGCTTTAAATGGTTTTATAATCTTATAAAT-GATTTTAAGTTGAATTTGTTTTCATTTTTGA-
* * * *
9536554 TG-AAATAGATCATAAGTTGATGTTTGCATTGGAAACATAAGCAAAAGCCATCCATTAACAAGAA
256 TGAAAACAGATCATAATTTGATGTTTGCATTGGAAACATGAGCAAAAGCCATCCATTGACAAGAA
* * * *
9536618 AAGTCCATTTTATTGTCACTAATGCCTTCGAAAA-CCTTGTTACTCGCTTCT-AGTGGTTTTACA
321 AAGTCCA-TTTATAGTCACTCATGCCTTC-AAAAGCCTTATTACTC-CTT-TAAGTGGTTTTA-T
* * ** * *** * *
9536681 ACTTTATAAATGATTTTAAACTGGCTTTGTTTTTCATTTTAGGTTAAAAGAGATCAG-AATTTGA
381 ACATTATAAATGATTTTAAATTGAATTT-ATTTTCATTTTTCATTGAAACAGATC-GTAATTTGA
* * * * * ** *
9536745 TGATCGCATTGGGAAATGTTAAGCGAAAGCAATCCATTGACAAGAAAAGTGAATTTATAGTC-GT
444 TGTTTGCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACT
* * * *
9536809 CCATGCCTTTAAAAGCCTTATTACTCGCTTGAAGTGGTTTTATGACTTTATAAATGATTTTAAAT
1 -CATGCCTTTGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTATAAATGATTTTAAAT
* ** * * *
9536874 TGATTTTTTTTCATTTTTCATTAAAATAAATCATAATTTGATGTTTGCATTGGAAAACATTAAG-
65 TAATTTTTTTTCATTTTTGGTTAAAATAGATCATAATTTGATGTTTGCATTGGGAAACATGAAGC
* * * * * * *
9536938 GAAAAGCTATCCATTGACAAGAAATGTCAATTTCTAGTAACTTATGCCTTC-AACAGCCTAGTTA
130 G-AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAA-AGCCTTGTTA
** * * * * * * * *
9537002 CTTACTTTAAATGGCTTTATAATCTCATAAATAATTTTTAGTTGCATTTGTTTTCATTTTAGGTT
193 CTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTGTTTTCATTTTTGATG
* * * * * *
9537067 AAACCATATCATAATTGGATTTTTGCCTTGGCAAACATGAAGCAAAAGCCATCCATTGATAAGAA
258 AAAACAGATCATAATTTGATGTTTGCATTGG-AAACATG-AGCAAAAGCCATCCATTGACAAGAA
* * * * *
9537132 AAGTCCATTTGTAGTCACTGATGCCTTCAAAAACCTTGTTACTCGCTTTAAGTGGTTTTATAAAT
321 AAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTC-CTTTAAGTGGTTTTATACA-
* * * *
9537197 TTATAAGTGATTTTAAATTGAATTTATTTTCATTTTTCATTAAAATAGATTGTAATTTGATGTTT
384 TTATAAATGATTTTAAATTGAATTTATTTTCATTTTTCATTGAAACAGATCGTAATTTGATGTTT
* ** * * *
9537262 GCATTGGCAATTGTGAAGTGAAAGCCATCCATTGACAATAAAAGTCCATTTGTAGTCACT
449 GCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACT
* ** * * * *
9537322 CGTGCCTTTGAAAGCCTAATTACTTGCTTTAAATGGTTTTATAATTTTATAAATGATTTTAAGTT
1 CATGCCTTTGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTATAAATGATTTTAAATT
* * * * * * * * *
9537387 GATTTTTTTTTATTTTTGGTTAACACAGATCATAGTTTGATGTTTTGTC-TTAGAAAACGTGATG
66 AATTTTTTTTCATTTTTGGTTAAAATAGATCATAATTTGATG-TTTG-CATTGGGAAACATGAAG
* ** *
9537451 CGAAAGCCATCTATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTAAAAGCGTTGTTAC
129 CGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTAC
* * * *
9537516 TTGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGATTTTCTTTTCATTTTT-AGTT
194 TCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTGTTTTCATTTTTGA-TG
* * * ** * * * *
9537580 AAAACAGATCATAATTGGATGCTTGCCTCAAGAAACATGAGGCAAAATCTATTCATTGACAAGGA
258 AAAACAGATCATAATTTGATGTTTGCAT-TGGAAACATGA-GCAAAAGCCATCCATTGACAAGAA
* * * * * * * * *
9537645 TAGTCTATTTATAATCACTCATACCTTCGAGAGCCTTGTTACTCTCTTTAAATGGTTTTCTA-AT
321 AAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTC-CTTTAAGTGGTTTTATACAT
*
9537709 CTCATAAATCATTTTAA
385 -T-ATAAATGATTTTAA
9537726 GGATTCGTTT
Statistics
Matches: 2818, Mismatches: 563, Indels: 195
0.79 0.16 0.05
Matches are distributed among these distances:
509 5 0.00
510 61 0.02
511 500 0.18
512 898 0.32
513 763 0.27
514 465 0.17
515 124 0.04
516 2 0.00
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.38
Consensus pattern (508 bp):
CATGCCTTTGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTATAAATGATTTTAAATT
AATTTTTTTTCATTTTTGGTTAAAATAGATCATAATTTGATGTTTGCATTGGGAAACATGAAGCG
AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTC
GCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTGTTTTCATTTTTGATGAAA
ACAGATCATAATTTGATGTTTGCATTGGAAACATGAGCAAAAGCCATCCATTGACAAGAAAAGTC
CATTTATAGTCACTCATGCCTTCAAAAGCCTTATTACTCCTTTAAGTGGTTTTATACATTATAAA
TGATTTTAAATTGAATTTATTTTCATTTTTCATTGAAACAGATCGTAATTTGATGTTTGCATTGG
GAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACT
Found at i:9537726 original size:171 final size:171
Alignment explanation
Indices: 9533768--9537726 Score: 3558
Period size: 171 Copynumber: 23.2 Consensus size: 171
9533758 GGATTGAAGC
* ** *
9533768 GGTTTTATAA-CTTTATAAATGATTTTAAATTGAATTTGTTTTCATTTTTCCTTAAAATAGATCA
1 GGTTTTATAATC-TTATAAATGATTTTAAGTTGAATTTGTTTTCATTTTTAGTTAAAACAGATCA
* * * **
9533832 TAATTTAATGTTTGCATTGGGAGACATGAAGCAAAAGCCATCAATTGACAAGAAAAGTTTA-TTA
65 TAATTTGATGTTTGCATTGGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTA
* * *
9533896 TAGTCAGTCATGCCTTCGAAAACCTAGTTACTCGCTTTAAAT
130 TAGTCACTCATGCCTTCGAAAGCCTTGTTACTCGCTTTAAAT
* *
9533938 GGTTTTATAATCTTATAAATGTTTTTAAGTTGAAATTTGTTTTCATTTTTATTTAAAACAGATCA
1 GGTTTTATAATCTTATAAATGATTTTAAGTTG-AATTTGTTTTCATTTTTAGTTAAAACAGATCA
* *** * * * *
9534003 TAATTTGATGTTTTGCCTTGGGAATTGTGACGCGAAAGTCACCCATTGACAAGAAAAGTCCATTT
65 TAATTTGATG-TTTGCATTGGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTT
* * * * *
9534068 ATAGTCACTCATGCCTTCGAAAGTCTAGGTCCTTGCTTTAAAT
129 ATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCGCTTTAAAT
* * * * *
9534111 GGTTTTATAATCTTATAAATGATTTTCAGTTGAATTTGTTTTCATTTTTGGTTCAAACAAATGAT
1 GGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTGTTTTCATTTTTAGTTAAAACAGATCAT
* * * * * ** * * *
9534176 AAGTTGATGTCTACATTGGGAAACATGAATCAAGAGCCATCTGTTGAGAAGAAAAGTCTATTTAC
66 AATTTGATGTTTGCATTGGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTAT
* * * *
9534241 AGTCACTGATGCCTTCGAAAGCCTTATTACTTC-ATTTAAGT
131 AGTCACTCATGCCTTCGAAAGCCTTGTTAC-TCGCTTTAAAT
** * * * * ** * * *
9534282 TATTTTGTAA-CTATATAAATGATTTTAAATTAAATTTATTCACATTTTCCA-TTAGAATAGATC
1 GGTTTTATAATCT-TATAAATGATTTTAAGTTGAATTTGTTTTCATTTT-TAGTTAAAACAGATC
* * **
9534345 GTAATTTGATATTTGCATTGGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCTTTTT
64 ATAATTTGATGTTTGCATTGGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTT
* * * * * *
9534410 ATAATCAATCATGCCTTTGAAAGCCTAGTTACTCACTTGAAAT
129 ATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCGCTTTAAAT
* * * * *
9534453 GCTTTTATAATCTCATAAGTGATTTTAAGTTGAATTTGTTTTCATTTTTGGTTAACACAGATCAT
1 GGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTGTTTTCATTTTTAGTTAAAACAGATCAT
* * * * * *
9534518 AATTGGATATTTGTC-TTGGGAAACATGAAGCAAAAGCCATCAATTGACAATAAAAGTTCATGTA
66 AATTTGATGTTTG-CATTGGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTA
* *
9534582 TAGTCACTCATGCCTTTGAATGCCTTGTTACTCGCTTTAAAT
130 TAGTCACTCATGCCTTCGAAAGCCTTGTTACTCGCTTTAAAT
* * * *
9534624 GGTTTTATGATCTTATAAATGATTTTCAGTTGAATTTGTTTTCATTTTTGGTTGAAACAGATCAT
1 GGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTGTTTTCATTTTTAGTTAAAACAGATCAT
** ** *
9534689 AGGTTGATGTTTGCATTGGGAAATGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTAT
66 AATTTGATGTTTGCATTGGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTAT
* ** * * *
9534754 TGTTGCTCATACCTTCGAAAGCTTTGTTACTCGCTTTAAGT
131 AGTCACTCATGCCTTCGAAAGCCTTGTTACTCGCTTTAAAT
** * * *
9534795 GGTTTTATAA-CTTTATAAATGATTTTAAACT-AATCTTTTTTTTC-CTTTTAGGTTAAAAGAGA
1 GGTTTTATAATC-TTATAAATGATTTTAAGTTGAA--TTTGTTTTCATTTTTA-GTTAAAACAGA
* * * * * * * *
9534857 TCATAATTTGATATTTGCATCGAGAAACATGATGCGAAAGCCAGCCATTGATAA-AACAA-TCAA
62 TCATAATTTGATGTTTGCATTGGGAAACATGAAGCAAAAGCCATCCATTGACAAGAA-AAGTCCA
* * *
9534920 TTTATAGTCACTGATGCCTTCGAAAGCCTTGTTACTCACTTTAAGT
126 TTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCGCTTTAAAT
* * * * **
9534966 GATTTTATAA-CTTTATAAATGATTGTAAGTAGAATTT-TTTTCATTTTTCA-TGAAAAGGGATC
1 GGTTTTATAATC-TTATAAATGATTTTAAGTTGAATTTGTTTTCATTTTT-AGTTAAAACAGATC
* * * * *** * *
9535028 ACAATTTGATATTTGCATTGAGAAACATG-AGTCAAAAGCTATTTGTTGAGAAGAAAAGTCCAGT
64 ATAATTTGATGTTTGCATTGGGAAACATGAAG-CAAAAGCCATCCATTGACAAGAAAAGTCCATT
** * *
9535092 TATAGTCACTCATGCCTTTAAAAGCCTTATTACTC-CATTTAAGT
128 TATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCGC-TTTAAAT
* * * * * * *
9535136 GGTTTTGT-AGCATTATAAATGATTTTAAATTGAATTTATTTACATTTTTCA-TTGAAATAGATC
1 GGTTTTATAATC-TTATAAATGATTTTAAGTTGAATTTGTTTTCATTTTT-AGTTAAAACAGATC
* ** * * *
9535199 GTAATTTGATGTTCACATTGGGAAACATGAAGCGAAGGCCATCTATTGACAAGAAAAGTCCATTT
64 ATAATTTGATGTTTGCATTGGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTT
* * ** * *
9535264 ATAATCAATCATGCCTTTAAAAG-CTTAGTTACTCACTTGAAAT
129 ATAGTCACTCATGCCTTCGAAAGCCTT-GTTACTCGCTTTAAAT
* * * * *
9535307 GCTTTTATAATCTCATAAATGATTTTAAGCTGAATTTGTTTACATTTTTGGTTAAAACAGATCAT
1 GGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTGTTTTCATTTTTAGTTAAAACAGATCAT
* * * ** * ** *
9535372 AATTGGGTGTTTGCCTTGGGAAACATGAAGTGAAAGCAATTGATTGACAAGAAAAGTCCATTTAC
66 AATTTGATGTTTGCATTGGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTAT
* * *
9535437 AATCATTGATGCCTTCGAAAGCCTTGTTACTCGCTTTAAAT
131 AGTCACTCATGCCTTCGAAAGCCTTGTTACTCGCTTTAAAT
* * ** * * *
9535478 TGTTTTATAAACTTATAAATGATTTTTTGTTGAATTTGTTTT-TTTTTTGGTTGAAACAGATCAT
1 GGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTGTTTTCATTTTTAGTTAAAACAGATCAT
* * * * * * *
9535542 AAGTTGATGTTTGCATTAGGAAACGTAAAGCGAGAGCCATCCATGGACAAGAAAAGTCCATTTAT
66 AATTTGATGTTTGCATTGGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTAT
* *
9535607 AGTCACTCATGCCTTCGAAAGCCTAGTTACTCAC-TTAAAT
131 AGTCACTCATGCCTTCGAAAGCCTTGTTACTCGCTTTAAAT
* * **** * *
9535647 GGTTTTATAATCTCATTAATGATTTTAAAACAAATTTATTTTCATTTTTAGTTTAAACAGATCAT
1 GGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTGTTTTCATTTTTAGTTAAAACAGATCAT
* * * * * ** * *
9535712 AATTGGATGTTTGC-CTCGTAGAACGTGAAGTGAAAGCCATCGATTGACAAGAAAAGTCCATTAA
66 AATTTGATGTTTGCATTGGGA-AACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTA
* * * * ** *
9535776 TTGACACTAATACCTTTAAAAGCCTTGTTACTCGCTTTAAGT
130 TAGTCACTCATGCCTTCGAAAGCCTTGTTACTCGCTTTAAAT
** * * *
9535818 GGTTTTATAA-CTTTATAAATGATTTTAAACTG-ATCTTTTTTTCA-TTTTAGGATAAAAGAGAT
1 GGTTTTATAATC-TTATAAATGATTTTAAGTTGAAT-TTGTTTTCATTTTTA-GTTAAAACAGAT
* ** ** * *
9535880 CATAATCTGATGTTTGCATCAGGAAACATGAAGTGAAAGCCATCCATTGATAA-AATAAATCCAT
63 CATAATTTGATGTTTGCATTGGGAAACATGAAGCAAAAGCCATCCATTGACAAGAA-AAGTCCAT
* * *
9535944 TTATAGTCACCCATGCCTTTGAAAG-CTTGTTACTCGCTTTAAGT
127 TTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCGCTTTAAAT
* * * * **
9535988 GATTTTATAA-CTTTATAAATGATTTTAAATAGAATTTGTTTTTCATTTTTCA-TGAAAAGGGAT
1 GGTTTTATAATC-TTATAAATGATTTTAAGTTGAATTTG-TTTTCATTTTT-AGTTAAAACAGAT
* * ** * *
9536051 CACAATTTGATGTTTGCATTGGAAAACATG-AGTCAAAAGCCATCCGCTAAGAAGAAAAGTCCAT
63 CATAATTTGATGTTTGCATTGGGAAACATGAAG-CAAAAGCCATCCATTGACAAGAAAAGTCCAT
* ** * * *
9536115 TTACAG-CTACTCATGCCTTTAAAAACCTTATTACTC-CATTTAAGT
127 TTATAGTC-ACTCATGCCTTCGAAAGCCTTGTTACTCGC-TTTAAAT
* * * * * * * * *
9536160 GGTTTTGTAGTGTTATAAATGATTTTAAATTGAATTTATTTACATTTTTCA-TTGAAATAGATCG
1 GGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTGTTTTCATTTTT-AGTTAAAACAGATCA
9536224 TAATTTGATGTTTTGCATTGGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTT
65 TAATTTGATG-TTTGCATTGGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTT
* * * * * **
9536289 ATAATCAATCATGTCGTCGAAAGCCTAGTTACTTACTTTAAAT
129 ATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCGCTTTAAAT
** * * *
9536332 ACTTTTATAATCTCATAAATGATTTTAAGTTGAATTTGTTTTCATTTTTAGCTAAAATAGATCAT
1 GGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTGTTTTCATTTTTAGTTAAAACAGATCAT
* * ** * * * *
9536397 AATTGGATGTTTGCCTTGGGAAACATGAAGTGAAAGCCATCTATTCACAAGTAAAGTCCATTTGT
66 AATTTGATGTTTGCATTGGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTAT
* * * *
9536462 AGTTATTCAAGCCTTTGGAAA-CCTTGTTACTCGCTTTAAAT
131 AGTCACTCATGCC-TTCGAAAGCCTTGTTACTCGCTTTAAAT
* * * *
9536503 GGTTTTATAATCTTATAAATCG-TTTTTAGATGAA-TTGTTTTCATTTTT-GATTGAAATAGATC
1 GGTTTTATAATCTTATAAAT-GATTTTAAGTTGAATTTGTTTTCATTTTTAG-TTAAAACAGATC
* *
9536565 ATAAGTTGATGTTTGCATT-GGAAACAT-AAGCAAAAGCCATCCATTAACAAGAAAAGTCCATTT
64 ATAATTTGATGTTTGCATTGGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCA-TT
* * * *
9536628 TATTGTCACTAATGCCTTCGAAAACCTTGTTACTCGCTTCT-AGT
128 TATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCGCTT-TAAAT
* ** ** *
9536672 GGTTTTACAA-CTTTATAAATGATTTTAAACTGGCTTTGTTTTTCA-TTTTAGGTTAAAAGAGAT
1 GGTTTTATAATC-TTATAAATGATTTTAAGTTGAATTTG-TTTTCATTTTTA-GTTAAAACAGAT
* * * ** * * * **
9536735 CAGAATTTGATGATCGCATTGGGAAATGTTAAGCGAAAGCAATCCATTGACAAGAAAAGTGAATT
63 CATAATTTGATGTTTGCATTGGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATT
* ** * * *
9536800 TATAGTC-GTCCATGCCTTTAAAAGCCTTATTACTCGCTTGAAGT
128 TATAGTCACT-CATGCCTTCGAAAGCCTTGTTACTCGCTTTAAAT
* * * * *
9536844 GGTTTTATGA-CTTTATAAATGATTTTAAATTG-ATTTTTTTTCATTTTTCA-TTAAAATAAATC
1 GGTTTTATAATC-TTATAAATGATTTTAAGTTGAATTTGTTTTCATTTTT-AGTTAAAACAGATC
* * * * * *
9536906 ATAATTTGATGTTTGCATTGGAAAACATTAAGGAAAAGCTATCCATTGACAAGAAATGTCAATTT
64 ATAATTTGATGTTTGCATTGGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTT
* * * * **
9536971 CTAGTAACTTATGCCTTC-AACAGCCTAGTTACTTACTTTAAAT
129 ATAGTCACTCATGCCTTCGAA-AGCCTTGTTACTCGCTTTAAAT
* * * * * * *
9537014 GGCTTTATAATCTCATAAATAATTTTTAGTTGCATTTGTTTTCA-TTTTAGGTTAAACCATATCA
1 GGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTGTTTTCATTTTTA-GTTAAAACAGATCA
* * * * * *
9537078 TAATTGGATTTTTGCCTTGGCAAACATGAAGCAAAAGCCATCCATTGATAAGAAAAGTCCATTTG
65 TAATTTGATGTTTGCATTGGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTA
* * * *
9537143 TAGTCACTGATGCCTTCAAAAACCTTGTTACTCGCTTTAAGT
130 TAGTCACTCATGCCTTCGAAAGCCTTGTTACTCGCTTTAAAT
* * * * *
9537185 GGTTTTATAAAT-TTATAAGTGATTTTAAATTGAATTTATTTTCATTTTTCA-TTAAAATAGATT
1 GGTTTTAT-AATCTTATAAATGATTTTAAGTTGAATTTGTTTTCATTTTT-AGTTAAAACAGATC
* * *** ** *
9537248 GTAATTTGATGTTTGCATTGGCAATTGTGAAGTGAAAGCCATCCATTGACAATAAAAGTCCATTT
64 ATAATTTGATGTTTGCATTGGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTT
* * * ** *
9537313 GTAGTCACTCGTGCCTTTGAAAGCCTAATTACTTGCTTTAAAT
129 ATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCGCTTTAAAT
* * * * *
9537356 GGTTTTATAATTTTATAAATGATTTTAAGTTG-ATTTTTTTTTATTTTTGGTTAACACAGATCAT
1 GGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTGTTTTCATTTTTAGTTAAAACAGATCAT
* * * * * * *
9537420 AGTTTGATGTTTTGTC-TTAGAAAACGTGATGCGAAAGCCATCTATTGACAAGAAAAGTCCATTT
66 AATTTGATG-TTTG-CATTGGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTT
** * *
9537484 ATAGTCACTCATGCCTTTAAAAGCGTTGTTACTTGCTTTAAAT
129 ATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCGCTTTAAAT
* *
9537527 GGTTTTATAATCTTATAAATGATTTTAAGTTGATTTTCTTTTCATTTTTAGTTAAAACAGATCAT
1 GGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTGTTTTCATTTTTAGTTAAAACAGATCAT
* * * *** * * * * * * *
9537592 AATTGGATGCTTGCCTCAAGAAACATGAGGCAAAATCTATTCATTGACAAGGATAGTCTATTTAT
66 AATTTGATGTTTGCATTGGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTAT
* * * *
9537657 AATCACTCATACCTTCGAGAGCCTTGTTACTCTCTTTAAAT
131 AGTCACTCATGCCTTCGAAAGCCTTGTTACTCGCTTTAAAT
* * *
9537698 GGTTTTCTAATCTCATAAATCATTTTAAG
1 GGTTTTATAATCTTATAAATGATTTTAAG
9537727 GATTCGTTTA
Statistics
Matches: 3073, Mismatches: 627, Indels: 177
0.79 0.16 0.05
Matches are distributed among these distances:
168 37 0.01
169 164 0.05
170 586 0.19
171 1722 0.56
172 461 0.15
173 103 0.03
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.38
Consensus pattern (171 bp):
GGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTGTTTTCATTTTTAGTTAAAACAGATCAT
AATTTGATGTTTGCATTGGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTAT
AGTCACTCATGCCTTCGAAAGCCTTGTTACTCGCTTTAAAT
Found at i:9539252 original size:171 final size:169
Alignment explanation
Indices: 9538866--9539341 Score: 553
Period size: 171 Copynumber: 2.8 Consensus size: 169
9538856 CTGATAAAGG
* * * * *
9538866 ATTTTAAATTGATTTTGTTTTTCATTTTTGGTTAAAATAGATCGTAATTTGACGTTTGCATTAGG
1 ATTTTGAATTGAATTT-TTTTTCATTTTTGATTAAAATAGATCATAATTTGATGTTTGCATTAGG
* * ** * * ** * *
9538931 AAACGTTAAGTAAAAGCCATCGATTGATAAGAAAAGTCCATTTATAGTCACTCTTGTCTTTGGAA
65 AAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAGGCCTTTGAAA
* * *
9538996 GCCTAGTTACTCGATTTAAATGGTTTATAATTTTATAAAT
130 GCCTAGTTACTCGATTGAAATGGTTTAGAAATTTATAAAT
* * *
9539036 ATTTTTAAGTTGAATTTTTTTTCATTTTTGTTTAAAACAGATCATAATTTGATGTTTGTC-TT-G
1 ATTTTGAA-TTGAATTTTTTTTCATTTTTGATTAAAATAGATCATAATTTGATGTTTG-CATTAG
* *
9539099 GAAAACATGAAGCGAAAGCCATCCACTGACAAGAAAAGTCCATTTATAGTCGCTCAGGCCTTTCG
64 G-AAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAGGCCTTT-G
* * *
9539164 AAAGTCTTGTTACTCGCTTGAAATGGTTTTAGAAATTTATAAAT
127 AAAGCCTAGTTACTCGATTGAAATGG-TTTAGAAATTTATAAAT
* *
9539208 GA-TTTGAATTGAATTTTTTTTCATTTTTCATTAAAATAGATCATAATTTGATGTTTACATTAGG
1 -ATTTTGAATTGAATTTTTTTTCATTTTTGATTAAAATAGATCATAATTTGATGTTTGCATTAGG
* * * * ** *
9539272 AAACATGAAGCGAAATCTATCCATTGACAATAAGAGTCCATTTATAGTCACTCATACCTTTAAAA
65 AAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAGGCCTTTGAAA
9539337 GCCTA
130 GCCTA
9539342 ATTTATAAAT
Statistics
Matches: 258, Mismatches: 40, Indels: 16
0.82 0.13 0.05
Matches are distributed among these distances:
169 2 0.01
170 103 0.40
171 130 0.50
172 22 0.09
173 1 0.00
ACGTcount: A:0.33, C:0.13, G:0.15, T:0.39
Consensus pattern (169 bp):
ATTTTGAATTGAATTTTTTTTCATTTTTGATTAAAATAGATCATAATTTGATGTTTGCATTAGGA
AACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAGGCCTTTGAAAG
CCTAGTTACTCGATTGAAATGGTTTAGAAATTTATAAAT
Found at i:9539459 original size:145 final size:145
Alignment explanation
Indices: 9539197--9539482 Score: 362
Period size: 145 Copynumber: 2.0 Consensus size: 145
9539187 TGGTTTTAGA
* * *
9539197 AATTTATAAATGATTTGAATTGAATTTTTTTTCATTTTTCATTAAAATAGATCATAATTTGATGT
1 AATTTATAAATGATTTGAATTAAATTTTTTTTCATTTTTCATTAAAACAGATCATAATTGGATGT
* * * * * *
9539262 TTACATTAGGAAACATGAAGCGAAATCTATCCATTGACAATAAGAGTCCATTTATAG-TCACTCA
66 TTACATTACGAAACATGAAGAGAAAGCCATCCATTGACAAGAAAAGTCCATTTAT-GTTCACTCA
9539326 TACCTTT-AAAAGCCT
130 TACCTTTGAAAAGCCT
* **
9539341 AATTTATAAATGATTTTAAGTTAAATTTTTTTGT-ATTTTTGGTTAAAACAGATCATAATTGGAT
1 AATTTATAAATGATTTGAA-TTAAATTTTTTT-TCATTTTTCATTAAAACAGATCATAATTGGAT
* * * * *
9539405 GTTTTCCTTACGAAACGTGAAGAGAAAGCCATTCTTTGACAAGAAAAGTCCATTTATGTTCACTC
64 GTTTACATTACGAAACATGAAGAGAAAGCCATCCATTGACAAGAAAAGTCCATTTATGTTCACTC
*
9539470 ATGCCTTTGAAAA
129 ATACCTTTGAAAA
9539483 CCTTGTTACC
Statistics
Matches: 120, Mismatches: 18, Indels: 6
0.83 0.12 0.04
Matches are distributed among these distances:
144 19 0.16
145 96 0.80
146 5 0.04
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.39
Consensus pattern (145 bp):
AATTTATAAATGATTTGAATTAAATTTTTTTTCATTTTTCATTAAAACAGATCATAATTGGATGT
TTACATTACGAAACATGAAGAGAAAGCCATCCATTGACAAGAAAAGTCCATTTATGTTCACTCAT
ACCTTTGAAAAGCCT
Found at i:9539622 original size:165 final size:162
Alignment explanation
Indices: 9539340--9540905 Score: 755
Period size: 170 Copynumber: 9.4 Consensus size: 162
9539330 TTTAAAAGCC
* *
9539340 TAAT-TTATAAATGATTTTAAGTTAAATTTTTTTGTATTTTTGGTTAAAACAGATCATAATTGGA
1 TAATCTTATAAATGATTTTAAGTT-GA--TTTTT-T-TTTTTGGTTAAAACAGATCATAATTAGA
* ** * * *
9539404 TGTTTTCCTTACGAAACGTGAAGAGAAAGCCATTCTTTGACAAGAAAAGTCCATTTATGTTCACT
61 TG-TTTGC-TGGGAAACATGAAGA-AAAGCCATCCATTGACAAGAAAAGTCCATTTATG-TCACT
* * *
9539469 CATGCCTTTGAAAACCTTGTTACCGGCTTTAAATGGTTTTA
122 CATGCCTTTGAAAGCCTTGTTACCCGCTTTAAATGGTTTCA
*
9539510 TAATCTTATAAATGATTTTAAGTTGA-TTTTTTTTTTGGTTAAAACATATCATAATTAGATGTTT
1 TAATCTTATAAATGATTTTAAGTTGATTTTTTTTTTTGGTTAAAACAGATCATAATTAGATGTTT
* * * *
9539574 GGCTCGGGAAACATGAGGCAAAAGCCATCCATTAACAAGGAAAGTCCATTTATAGTCACTCAAGC
66 -GCT-GGGAAACATGAAG-AAAAGCCATCCATTGACAAGAAAAGTCCATTTAT-GTCACTCATGC
* *
9539639 C-TTCAAGAGCCTTGTTACCCGCTTTAAATGGTTGCA
127 CTTTGAA-AGCCTTGTTACCCGCTTTAAATGGTTTCA
* * * * * *
9539675 TGATCTCATAAATGATTGTAAGTTGAATTTTTTTTCATTTTCAGTTAAAAAAGATCATAATTTGA
1 TAATCTTATAAATGATTTTAAGTTG-A-TTTTTTT--TTTT-GGTTAAAACAGATCATAATTAGA
* * * * *
9539740 TGTTTGCAATGGGAAACTTAAAGTGAAAGCGATCCATTGACAAGAAAAGTCCATTTATAATCACT
61 TGTTTGC--TGGGAAACATGAAG-AAAAGCCATCCATTGACAAGAAAAGTCCATTTAT-GTCACT
** *
9539805 CATGCCTTTGAAAGCC-TGTTACTTGCTTTAAGTGGTTTCA
122 CATGCCTTTGAAAGCCTTGTTACCCGCTTTAAATGGTTTCA
* * * ** * ** ** * *
9539845 T-AGCAT-TAAATGATTTTAAATCCA---ATCATAAT--TT-----A-AT--T-GTT---TGCTT
1 TAATCTTATAAATGATTTTAAGTTGATTTTTTTTTTTGGTTAAAACAGATCATAATTAGATGTTT
* * * * *
9539891 -CAGGGAACATGCA-G-TG-AAAGCCATCCATTGACATGAAAAGTCTATTTATAGTCATTCATGC
66 GCTGGGAA-A--CATGAAGAAAAGCCATCCATTGACAAGAAAAGTCCATTTAT-GTCACTCATGC
* * * ** * *
9539952 CTGTGAGAGCCTTATTATTCACTTTAAGTGGTTT-A
127 CTTTGAAAGCCTTGTTACCCGCTTTAAATGGTTTCA
* * * * * * * **
9539987 T-AGCTTTACAAATAATTTTGAACTTAGTTTGTTTTTATTTTTTGTTAAAACATATCATAATTTT
1 TAATC-TTATAAATGATTTT-AAGTT-G-AT-TTTTT-TTTTTGGTTAAAACAGATCATAATTAG
** * *
9540051 ATGTCAGCATTGGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCGTTTGTAGTCAC
60 ATGTTTGC--TGGGAAACATGAAG-AAAAGCCATCCATTGACAAGAAAAGTCCATTTAT-GTCAC
* * ** * * * *
9540116 TTAAGCCTTCAAAAGCCTTATTACTCGCTTTAAGTGGTTTTA
121 TCATGCCTTTGAAAGCCTTGTTACCCGCTTTAAATGGTTTCA
* * * ** *
9540158 TAA-CTTTATAAATGATATTAAATTGAATTTTTTTTATTTTTTGTTAAAATGGATCATAATTTGA
1 TAATC-TTATAAATGATTTTAAGTTG-A--TTTTTT-TTTTTGGTTAAAACAGATCATAATTAGA
* * *
9540222 TGTTTGCATTGGGAAACATGAATCG-AAAGCCATCCGTTGAGAAGAAAAGTCCATTTACAGTCAC
61 TGTTTGC--TGGGAAACATGAA--GAAAAGCCATCCATTGACAAGAAAAGTCCATTTA-TGTCAC
* * * * *
9540286 TCATGCCTTCGAAAGCCTTGTTGCTCGCTTTAAGTGGTTTTA
121 TCATGCCTTTGAAAGCCTTGTTACCCGCTTTAAATGGTTTCA
* * * *
9540328 TAA-CTTTATAAATGATTTTCAA-TTAAATTTTTTTCATTTTAGTTTAAAAGAGATCATAATTTG
1 TAATC-TTATAAATGATTTT-AAGTT-GATTTTTTT--TTTT-GGTTAAAACAGATCATAATTAG
** * * * *
9540391 AT-TTTGCCATAGATAAACGTGAAGTGAAAGCCATCCGTTGA-AAAAAAAGTCCATTTATAGTCA
60 ATGTTTG-C-T-GGGAAACATGAAG-AAAAGCCATCCATTGACAAGAAAAGTCCATTTAT-GTCA
* * * * * *
9540454 TTCATGCCTTCGAAAGTCTTGTTACTCGCTTTAATTGGTTTTA
120 CTCATGCCTTTGAAAGCCTTGTTACCCGCTTTAAATGGTTTCA
* * * * *
9540497 TAATTTTATAAATGATTATAAGTTGAATGTTTTTCATTTTTGATTAAAACATATCATAATTGAAA
1 TAATCTTATAAATGATTTTAAGTTG-AT-TTTTT--TTTTTGGTTAAAACAGATCATAATT-AGA
** ** * * * *
9540562 T-TTTGCTTCAAGAAATGTGAGGCAAAAGCCATCCATTGACAAGGAAAGTTCATTTATATTCACT
61 TGTTTGC-T-GGGAAACATGAAG-AAAAGCCATCCATTGACAAGAAAAGTCCATTTAT-GTCACT
* * * * * *
9540626 CAT-TCTTTCAAGAGCCTTGTTGCTCGCTTTAAATGATTTTA
122 CATGCCTTTGAA-AGCCTTGTTACCCGCTTTAAATGGTTTCA
* *
9540667 TAATCTCATAAATAATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATT-GT
1 TAATCTTATAAATGATTTTAAGTTG-A--TTTTTT--TTTTTGGTTAAAACAGATCATAATTAG-
** * * * * * *
9540731 ATGTTTGTCTCAAGAAACGTGAAGCGATAGCCATCCATTGATAAGAAAAGTTCATTTACAGTCAC
60 ATGTTTG-CT-GGGAAACATGAAG-AAAAGCCATCCATTGACAAGAAAAGTCCATTTA-TGTCAC
* * * * * ** *
9540796 TAATGCCTTCGAAAG-TTATGTTACTCACTTTAAGGGGTTTTA
121 TCATGCCTTTGAAAGCCT-TGTTACCCGCTTTAAATGGTTTCA
* * * *
9540838 TAA-CTTGATAAATGATTTTAAATTGAAATTTTTTTCATTTTAGGTTAAAACATATCACAATTTG
1 TAATCTT-ATAAATGATTTTAAGTTG--ATTTTTTT--TTTT-GGTTAAAACAGATCATAATTAG
9540902 ATGT
60 ATGT
9540906 CGTATTAGGA
Statistics
Matches: 1109, Mismatches: 197, Indels: 179
0.75 0.13 0.12
Matches are distributed among these distances:
142 54 0.05
143 24 0.02
144 11 0.01
145 4 0.00
146 5 0.00
149 2 0.00
150 1 0.00
151 1 0.00
152 4 0.00
153 1 0.00
154 2 0.00
158 2 0.00
159 1 0.00
160 2 0.00
161 2 0.00
162 1 0.00
163 3 0.00
164 8 0.01
165 124 0.11
166 8 0.01
167 8 0.01
168 31 0.03
169 142 0.13
170 388 0.35
171 262 0.24
172 18 0.02
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.39
Consensus pattern (162 bp):
TAATCTTATAAATGATTTTAAGTTGATTTTTTTTTTTGGTTAAAACAGATCATAATTAGATGTTT
GCTGGGAAACATGAAGAAAAGCCATCCATTGACAAGAAAAGTCCATTTATGTCACTCATGCCTTT
GAAAGCCTTGTTACCCGCTTTAAATGGTTTCA
Found at i:9539806 original size:171 final size:166
Alignment explanation
Indices: 9539346--9539812 Score: 503
Period size: 165 Copynumber: 2.8 Consensus size: 166
9539336 AGCCTAATTT
* * *
9539346 ATAAATGATTTTAAGTTAAATTTTTTTGTATTTTTGGTTAAAACAGATCATAATTGGATGTTTTC
1 ATAAATGATTTTAAGTTGAATTTTTTT-TA-TTTTGGTTAAAACAGATCATAATTAGATG-TTTG
** * * * **
9539411 CTTACGAAACGTGAAGAGAAAGCCATTCTTTGACAAGAAAAGTCCATTTATGTTCACTCATGCCT
63 C-TGGGAAACATGAAGAGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAATCACTCATGCC-
* * ** *
9539476 TTGAAAACCTTGTTACCGGCTTTAAATGGTTTTATAATCTT
126 TTCAAAACCTTGTTACCCGCTTTAAATGGTTGCATAATCTC
*
9539517 ATAAATGATTTTAAGTTG-A--TTTTTT-TTTTGGTTAAAACATATCATAATTAGATGTTTGGCT
1 ATAAATGATTTTAAGTTGAATTTTTTTTATTTTGGTTAAAACAGATCATAATTAGATGTTT-GCT
* * * * *
9539578 CGGGAAACATGAGGCA-AAAGCCATCCATTAACAAGGAAAGTCCATTTATAGTCACTCAAGCCTT
65 -GGGAAACATGAAG-AGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAATCACTCATGCCTT
* *
9539642 CAAGAGCCTTGTTACCCGCTTTAAATGGTTGCATGATCTC
128 CAA-AACCTTGTTACCCGCTTTAAATGGTTGCATAATCTC
* * * *
9539682 ATAAATGATTGTAAGTTGAATTTTTTTTCATTTTCAGTTAAAAAAGATCATAATTTGATGTTTGC
1 ATAAATGATTTTAAGTTGAATTTTTTTT-ATTTT-GGTTAAAACAGATCATAATTAGATGTTTGC
* * * *
9539747 AATGGGAAACTTAAAGTGAAAGCGATCCATTGACAAGAAAAGTCCATTTATAATCACTCATGCCT
64 --TGGGAAACATGAAGAGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAATCACTCATGCCT
9539812 T
127 T
9539813 TGAAAGCCTG
Statistics
Matches: 247, Mismatches: 36, Indels: 26
0.80 0.12 0.08
Matches are distributed among these distances:
164 8 0.03
165 123 0.50
166 2 0.01
167 1 0.00
168 11 0.04
170 7 0.03
171 94 0.38
172 1 0.00
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.37
Consensus pattern (166 bp):
ATAAATGATTTTAAGTTGAATTTTTTTTATTTTGGTTAAAACAGATCATAATTAGATGTTTGCTG
GGAAACATGAAGAGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAATCACTCATGCCTTCAA
AACCTTGTTACCCGCTTTAAATGGTTGCATAATCTC
Found at i:9540592 original size:339 final size:338
Alignment explanation
Indices: 9540064--9540905 Score: 927
Period size: 339 Copynumber: 2.5 Consensus size: 338
9540054 TCAGCATTGG
* * * * * *
9540064 GAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCGTTTGTAGTCACTTAAGCCTTCAAA
1 GAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCA-TTATGCCTTCGAA
* * *
9540129 AGCCTTATTACTCGCTTTAAGTGGTTTTATAACTTTATAAATGA-TATTAAATTGAATTTTTTTT
65 AGTCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTATAAATGATTA-TAAATTGAATTTTTTTC
*** ** * * *
9540193 ATTTTTTGTTAAAATGGATCATAATTTGATGTTTGCATTGGGAAACATGAATCGAAAGCCATCCG
129 A-TTTTTGTTAAAACATATCATAA-TTGATGTTTGCATTAAGAAACATGAAGCAAAAGCCATCCA
* *
9540258 TTGAGAAGAAAAGTCCATTTACAGTCACTCATGCCTTCGAA-AGCCTTGTTGCTCGCTTTAAGTG
192 TTGACAAGAAAAGTCCATTTACAGTCACTCATGCCTTC-AAGAGCCTTGTTGCTCGCTTTAAATG
* * * * *
9540322 GTTTTATAA-CTTTATAAATGATTTTCAA-TT-AAATTTTTTTCATTTTAGTTTAAAAGAGATCA
256 ATTTTATAATC-TCATAAATAATTTT-AAGTTGAAATTTTTTTCATTTTAGGTTAAAACAGATCA
9540384 TAATT-TGAT-TTTG-C-CATA
319 TAATTGT-ATGTTTGTCTCA-A
* * *
9540402 GATAAACGTGAAGTGAAAGCCATCCGTTGA-AAAAAAAGTCCATTTATAGTCATTCATGCCTTCG
1 G--AAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCATT-ATGCCTTCG
* * * *
9540466 AAAGTCTTGTTACTCGCTTTAATTGGTTTTATAATTTTATAAATGATTATAAGTTGAATGTTTTT
63 AAAGTCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTATAAATGATTATAAATTGAATTTTTTT
** *
9540531 CATTTTTGATTAAAACATATCATAATTGAAAT-TTTGC-TTCAAGAAATGTGAGGCAAAAGCCAT
128 CATTTTTG-TTAAAACATATCATAATTG--ATGTTTGCATT-AAGAAACATGAAGCAAAAGCCAT
* * * * * *
9540594 CCATTGACAAGGAAAGTTCATTTATATTCACTCATTCTTTCAAGAGCCTTGTTGCTCGCTTTAAA
189 CCATTGACAAGAAAAGTCCATTTACAGTCACTCATGCCTTCAAGAGCCTTGTTGCTCGCTTTAAA
* *
9540659 TGATTTTATAATCTCATAAATAATTTTAAGTTGAATTTTTTTTCATTTTTGGTTAAAACAGATCA
254 TGATTTTATAATCTCATAAATAATTTTAAGTTGAAATTTTTTTCATTTTAGGTTAAAACAGATCA
9540724 TAATTGTATGTTTGTCTCAA
319 TAATTGTATGTTTGTCTCAA
* * * * *
9540744 GAAACGTGAAGCGATAGCCATCCATTGATAAGAAAAGTTCATTTACAGTCACTAATGCCTTCGAA
1 GAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCA-TTATGCCTTCGAA
* * * *
9540809 AGT-TATGTTACTCACTTTAAGGGGTTTTATAACTTGATAAATGATTTTAAATTGAAATTTTTTT
65 AGTCT-TGTTACTCGCTTTAAGTGGTTTTATAACTTTATAAATGATTATAAATTG-AATTTTTTT
* *
9540873 CATTTTAGGTTAAAACATATCACAATTTGATGT
128 CATTTT-TGTTAAAACATATCATAA-TTGATGT
9540906 CGTATTAGGA
Statistics
Matches: 422, Mismatches: 59, Indels: 42
0.81 0.11 0.08
Matches are distributed among these distances:
338 18 0.04
339 194 0.46
340 88 0.21
341 82 0.19
342 34 0.08
343 6 0.01
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.39
Consensus pattern (338 bp):
GAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCATTATGCCTTCGAAA
GTCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTATAAATGATTATAAATTGAATTTTTTTCAT
TTTTGTTAAAACATATCATAATTGATGTTTGCATTAAGAAACATGAAGCAAAAGCCATCCATTGA
CAAGAAAAGTCCATTTACAGTCACTCATGCCTTCAAGAGCCTTGTTGCTCGCTTTAAATGATTTT
ATAATCTCATAAATAATTTTAAGTTGAAATTTTTTTCATTTTAGGTTAAAACAGATCATAATTGT
ATGTTTGTCTCAA
Found at i:9540746 original size:171 final size:170
Alignment explanation
Indices: 9539906--9540903 Score: 964
Period size: 170 Copynumber: 5.9 Consensus size: 170
9539896 AACATGCAGT
* * * * * *
9539906 GAAAGCCATCCATTGACATGAAAAGTCTATTTATAGTCATTCATGCCTGT-GAGAGCCTTATTAT
1 GAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCT-TCGAAAGCCTTGTTAC
* * * * * * * *
9539970 TCACTTTAAGTGG-TTTATAGCTTTACAAATAATTTTGAACTT--AGTTTGTTTTTATTTTTTGT
65 TCGCTTTAAGTGGTTTTATAACTTTATAAATGATTTT-AAATTGAAATTT-TTTTCATTTTTGGT
* * ** *** *
9540032 TAAAACATATCATAATTTTATGTCAGCATTGGGAAACATGAAGC
128 TAAAACAGATCATAATTTGAT-TTTGCATCAAGAAACGTGAAGC
* * * * * * *
9540076 AAAAGCCATCCATTGACAAGAAAAGTCCGTTTGTAGTCACTTAAGCCTTCAAAAGCCTTATTACT
1 GAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACT
* * *
9540141 CGCTTTAAGTGGTTTTATAACTTTATAAATGATATTAAATTG-AATTTTTTTTATTTTTTGTTAA
66 CGCTTTAAGTGGTTTTATAACTTTATAAATGATTTTAAATTGAAATTTTTTTCATTTTTGGTTAA
** *** * *
9540205 AATGGATCATAATTTGATGTTTGCATTGGGAAACATGAATC
131 AACAGATCATAATTTGAT-TTTGCATCAAGAAACGTGAAGC
* * * *
9540246 GAAAGCCATCCGTTGAGAAGAAAAGTCCATTTACAGTCACTCATGCCTTCGAAAGCCTTGTTGCT
1 GAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACT
* * *
9540311 CGCTTTAAGTGGTTTTATAACTTTATAAATGATTTTCAATT-AAATTTTTTTCATTTTAGTTTAA
66 CGCTTTAAGTGGTTTTATAACTTTATAAATGATTTTAAATTGAAATTTTTTTCATTTTTGGTTAA
* * *
9540375 AAGAGATCATAATTTGATTTTGCCAT-AGATAAACGTGAAGT
131 AACAGATCATAATTTGATTTTG-CATCA-AGAAACGTGAAGC
* * * *
9540416 GAAAGCCATCCGTTGA-AAAAAAAGTCCATTTATAGTCATTCATGCCTTCGAAAGTCTTGTTACT
1 GAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACT
* * * * * *
9540480 CGCTTTAATTGGTTTTATAATTTTATAAATGATTATAAGTTG-AATGTTTTTCATTTTTGATTAA
66 CGCTTTAAGTGGTTTTATAACTTTATAAATGATTTTAAATTGAAATTTTTTTCATTTTTGGTTAA
* * * *
9540544 AACATATCATAA-TTGAAATTTTGCTTCAAGAAATGTGAGGC
131 AACAGATCATAATTTG--ATTTTGCATCAAGAAACGTGAAGC
* * * * * * *
9540585 AAAAGCCATCCATTGACAAGGAAAGTTCATTTATATTCACTCATTCTTTC-AAGAGCCTTGTTGC
1 GAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAA-AGCCTTGTTAC
* * * * * *
9540649 TCGCTTTAAATGATTTTATAA-TCTCATAAATAATTTTAAGTTGAATTTTTTTTCATTTTTGGTT
65 TCGCTTTAAGTGGTTTTATAACT-TTATAAATGATTTTAAATTGAAATTTTTTTCATTTTTGGTT
9540713 AAAACAGATCATAA-TTGTATGTTTGTC-TCAAGAAACGTGAAGC
129 AAAACAGATCATAATTTG-AT-TTTG-CATCAAGAAACGTGAAGC
* * * * * *
9540756 GATAGCCATCCATTGATAAGAAAAGTTCATTTACAGTCACTAATGCCTTCGAAAG-TTATGTTAC
1 GAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCT-TGTTAC
* * * *
9540820 TCACTTTAAGGGGTTTTATAACTTGATAAATGATTTTAAATTGAAATTTTTTTCATTTTAGGTTA
65 TCGCTTTAAGTGGTTTTATAACTTTATAAATGATTTTAAATTGAAATTTTTTTCATTTTTGGTTA
* *
9540885 AAACATATCACAATTTGAT
130 AAACAGATCATAATTTGAT
9540904 GTCGTATTAG
Statistics
Matches: 693, Mismatches: 115, Indels: 39
0.82 0.14 0.05
Matches are distributed among these distances:
168 3 0.00
169 141 0.20
170 353 0.51
171 189 0.27
172 7 0.01
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.39
Consensus pattern (170 bp):
GAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACT
CGCTTTAAGTGGTTTTATAACTTTATAAATGATTTTAAATTGAAATTTTTTTCATTTTTGGTTAA
AACAGATCATAATTTGATTTTGCATCAAGAAACGTGAAGC
Found at i:9542102 original size:42 final size:42
Alignment explanation
Indices: 9542050--9542169 Score: 168
Period size: 42 Copynumber: 2.9 Consensus size: 42
9542040 CATCTCATAT
* *
9542050 GCAACGGCTTATGCGCACTCCCACTCGCACATAGCCAGGTTA
1 GCAACGGCTTATGTGCACTCCCACTCGCACATAGCCAGGTCA
* * *
9542092 GCAACAGCTTATGTGCACTCCCACTCGCACATAGTCGGGTCA
1 GCAACGGCTTATGTGCACTCCCACTCGCACATAGCCAGGTCA
* **
9542134 GCAATGGCTTATGTGCACTCTTACTCGCACATAGCC
1 GCAACGGCTTATGTGCACTCCCACTCGCACATAGCC
9542170 GAGTCCACAT
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 68 1.00
ACGTcount: A:0.23, C:0.33, G:0.21, T:0.23
Consensus pattern (42 bp):
GCAACGGCTTATGTGCACTCCCACTCGCACATAGCCAGGTCA
Found at i:9542981 original size:19 final size:19
Alignment explanation
Indices: 9542931--9542981 Score: 50
Period size: 19 Copynumber: 2.6 Consensus size: 19
9542921 GATAGAAGAA
9542931 GAAGAAGAAGACAAGCTGCTG
1 GAAGAAGAAG--AAGCTGCTG
**
9542952 GAA-ATTCAAGAAGCTGCTG
1 GAAGA-AGAAGAAGCTGCTG
9542971 GAAGAAGAAGA
1 GAAGAAGAAGA
9542982 TATTTATAGC
Statistics
Matches: 24, Mismatches: 4, Indels: 6
0.71 0.12 0.18
Matches are distributed among these distances:
19 16 0.67
20 2 0.08
21 6 0.25
ACGTcount: A:0.45, C:0.12, G:0.31, T:0.12
Consensus pattern (19 bp):
GAAGAAGAAGAAGCTGCTG
Found at i:9543691 original size:170 final size:169
Alignment explanation
Indices: 9543415--9546332 Score: 853
Period size: 170 Copynumber: 17.0 Consensus size: 169
9543405 GTCTTTTTAC
* * * * *
9543415 TATCACACATGCCTTCGAAAGCCTTGTTACTTGCTTTAAGA-GGTTTTATAATTTTATAAATAAC
1 TATCACTCATGCCTTCGAAAGCCTAGTTACTTGCTTTAA-ATGGTTTTATAATCTTATAAATGAT
** * * * ** *
9543479 TTT-AGATTGATTTTTTTCCATTTTTTGTGAAAACAGATCATAAATTAATGTTTGCATTGGGAAT
65 TTTAAG-TTGATTTTTTTTTATTTTTGGTTAAAACAAATCATAAATTAATGTTTGCATTAAGAAA
* * * * * *
9543543 TGTGAAAGGAAAATCGT-CACTTGACAAGAAAAGTCCATCCA
129 CGTGAAACGAAAACCATCCA-TTGAAAACAAAAGTCCATCCA
* *
9543584 TTATCACTCATGCCTTCGAATGCCTAGTTACTTGCTATAAATGGTTTTATAATCTTATAAATGAT
1 -TATCACTCATGCCTTCGAAAGCCTAGTTACTTGCTTTAAATGGTTTTATAATCTTATAAATGAT
* * * *
9543649 TTTAAGTTGATTTTTTTTTATTTCTGGTTAAAACAAATCATAATTTGATGTTTGTATTAAGAAAC
65 TTTAAGTTGATTTTTTTTTATTTTTGGTTAAAACAAATCATAAATTAATGTTTGCATTAAGAAAC
* **
9543714 GTGAAACGAAAGCCATCCATTGAAAACAAAAGTCCATTTA
130 GTGAAACGAAAACCATCCATTGAAAACAAAAGTCCATCCA
* *** * *
9543754 TAGTCACTTATGCCTTCGAAAGCCTAGTTACTCATTTTAAATGGTTTTATAATCATATAAATGTT
1 TA-TCACTCATGCCTTCGAAAGCCTAGTTACTTGCTTTAAATGGTTTTATAATCTTATAAATGAT
* * * *
9543819 TTTAAGTTGAATTTGTTTTTATTTTTGGTTAAAACAAATCAT-AATTCGAGGTTTGCATCAAGGA
65 TTTAAGTTG-ATTTTTTTTTATTTTTGGTTAAAACAAATCATAAATT-AATGTTTGCATTAA-GA
* * * * * **
9543883 AACATGAAGCGAAAATCATCCATTGATAAGAAAAGTCCATTTA
127 AACGTGAAACGAAAACCATCCATTGAAAACAAAAGTCCATCCA
* * * * * **
9543926 TAGTTACTCATGCTTTCGAAAGCGTAGTTACTCGCTTTAAGTATTTTTATAA-CTTTATAAATGA
1 TA-TCACTCATGCCTTCGAAAGCCTAGTTACTTGCTTTAAATGGTTTTATAATC-TTATAAATGA
* * * * * * *
9543990 TTTT-GGATTGAATTTTTTTTCATTTTAGGTTAAAATAGATCGT-AA-TAGATGTTTGTC-TCAA
64 TTTTAAG-TTG-ATTTTTTTTTATTTTTGGTTAAAACAAATCATAAATTA-ATGTTTG-CATTAA
* * * * * **
9544051 AAAACGTGAAGC-AAAAGCCATCCGTTGACAAGAAAAGTCCATTTA
125 GAAACGTGAAACGAAAA-CCATCCATTGAAAACAAAAGTCCATCCA
* ** * * * *
9544096 TAGTCA-TCCATGCCTTCGAAAGTCTAG-TAGCTCACTTTGAGTGGTATTACAATCTTATAAATG
1 TA-TCACT-CATGCCTTCGAAAGCCTAGTTA-CTTGCTTTAAATGGTTTTATAATCTTATAAATG
* * *
9544159 ATTTTAAGTTGAATTGTTTTACTT-TTTTT-GTTAAAACAGATCAT-AATTGAATGTTTTTC-TT
63 ATTTTAAGTTG-ATT-TTTT-TTTATTTTTGGTTAAAACAAATCATAAATT-AATG-TTTGCATT
* * * * * * ** * **
9544220 -GGTAACATGAATC-AAAAGCTATCCATTGACATGAAAGGTCCATTTA
123 AAGAAACGTGAAACGAAAA-CCATCCATTGAAAACAAAAGTCCATCCA
* * * * ** *
9544266 TAGTTACTTATGTCTTCGAAAGCCTAGTTACTCGCTTTAAATAATTTTATAATTTTATAAATGAT
1 TA-TCACTCATGCCTTCGAAAGCCTAGTTACTTGCTTTAAATGGTTTTATAATCTTATAAATGAT
*** * * * * * *
9544331 ACAAAATTGAATTTTTTTTTCATTTTTGGTTAAAATAAAACATAATTTGATGTTTGTC-TTAGGA
65 TTTAAGTTG-ATTTTTTTTT-ATTTTTGGTTAAAACAAATCATAAATTAATGTTTG-CATTAAGA
* * **
9544395 AACGTGAATC-AAATTCCATCCATTGACAAA-AAAAGTCCATTTA
127 AACGTGAAACGAAA-ACCATCCATTGA-AAACAAAAGTCCATCCA
* ** * * * * * *
9544438 TGTTCACTCATGCCTTTAAAAGACTAGTTACTCGCTTGAAGTAGTTTTATAA-CTTTATAAGTGA
1 T-ATCACTCATGCCTTCGAAAGCCTAGTTACTTGCTTTAAATGGTTTTATAATC-TTATAAATGA
* * * ** * * * * **
9544502 TTTCAAATTGAATTTTTTTTCATTTTTCATTAAAACAAATCTTAATTTAATGTTTTCACTGGGAA
64 TTTTAAGTTG-ATTTTTTTTTATTTTTGGTTAAAACAAATCATAAATTAATGTTTGCATTAAGAA
* ** * * * **
9544567 ACATGAAGTGAAAGCCATCCATTGAGAAGAAAAGTCCATTTA
128 ACGTGAAACGAAAACCATCCATTGAAAACAAAAGTCCATCCA
* * * * *
9544609 TAGTCACTCATACTTTCAAAAGCCTAGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGTT
1 TA-TCACTCATGCCTTCGAAAGCCTAGTTACTTGCTTTAAATGGTTTTATAATCTTATAAATGAT
* * * * * * * * * * * **
9544674 TTTAAATTGAACTTTTTGTCATTTTTGCTTCAAACATATCACAATTTGATGCTTGGC-TTGGGAA
65 TTTAAGTTG-ATTTTTTTTTATTTTTGGTTAAAACAAATCATAAATTAATG-TTTGCATTAAGAA
* ** * * * * *
9544738 ACATGAAGTGAAAGCCATCCATGGACAAGAAAAGTCCAT-TA
128 ACGTGAAACGAAAACCATCCATTGAAAACAAAAGTCCATCCA
* ** * * * * ** * *
9544779 TAGTCACTCATTCCTTTCGAAAGTGTTGGTACTCGCTTTAAGTCATTCTATAAAT-TTATAAATA
1 TA-TCACTCATGCC-TTCGAAAGCCTAGTTACTTGCTTTAAATGGTTTTAT-AATCTTATAAATG
* ** * * * * * *
9544843 ATTTTAAGTTTAATTTTTTTTT-TCATTTTCATTAAAACGGAA-CATAATTTGATATTCGCATTG
63 ATTTTAAG-TTGATTTTTTTTTAT--TTTTGGTTAAAAC-AAATCATAAATTAATGTTTGCATTA
* * * * * * * * **
9544906 GGAAACATGAAGCGAAAGCTATCCGTTGACAAGAAAAGTCCATTTA
124 AGAAACGTGAAACGAAAACCATCCATTGAAAACAAAAGTCCATCCA
* * ** * *
9544952 TAGTCATTCATGCCTTCAAAAGCCTAGTTACTCACTTCAAGTGGTTTTATAAAT-TTATAAATGA
1 TA-TCACTCATGCCTTCGAAAGCCTAGTTACTTGCTTTAAATGGTTTTAT-AATCTTATAAATGA
** * ** ** * * *** * *
9545016 TTTT-A--T-AAATTTATGAATGATT--TT---A-GAATGATTTTTTCAT-TTTTCATTAA-AAT
64 TTTTAAGTTGATTTTTTTTTATTTTTGGTTAAAACAAATCATAAATTAATGTTTGCATTAAGAA-
* ** **** * ***
9545069 AGGTTGTAATTTGATGTTTGCATTAGCAATTGTAAAGTGAAAG-CCATCCA
128 ACG-TG-AA-ACGA--AAACCA-T--CCATTG-AAAACAAAAGTCCATCCA
* *** * * * ** * * *
9545119 TTGATAAGAAAAGTCCATTTG-TAGTCACTCATGCCTTTGA-AAGCCTAATT-ACTCGCTTTA-A
1 -T-ATCACTCATG-CC-TTCGAAAG-C-CT-A-G---TT-ACTTG-CT--TTAAATGGTTTTATA
* * * * * * * * *
9545180 ATGGTTTTATAAT-CTTATAAATGATTTTAACTTGAATTGGTTTTCATTTTTTGTTCAAACAGAT
51 AT-CTTATA-AATGATT-TTAA-G---TTGA-TT---TT--TTTTTATTTTTGGTTAAAACAAAT
* * * * ** * * * *
9545244 CAT-AATTGGATGTTTGCCA-TGAGACATGTGAAGTGAAAGCCATCCAGTGATAAGAAAAGTCCA
103 CATAAATT-AATGTTTG-CATTAAGAAACGTGAAACGAAAACCATCCATTGAAAACAAAAGTCCA
**
9545307 TTTA
166 TCCA
* ** * * * *
9545311 TAGTCACCCATGCCTTCGAAAGCCTTCTTACTTGTTTTAAGTGTTTTTATAA-CTTTATAGATGA
1 TA-TCACTCATGCCTTCGAAAGCCTAGTTACTTGCTTTAAATGGTTTTATAATC-TTATAAATGA
* * * ** * ** * *
9545375 TTTTAAATTGAATTTGTTTTCATTTTTCATTAAAACATATTGTAATTTAATGTTTGCA-TAGGGA
64 TTTTAAGTTG-ATTTTTTTTTATTTTTGGTTAAAACAAATCATAAATTAATGTTTGCATTA-AGA
* * * * * ** **
9545439 AACATGAAGC-AAAAGACATCTATTGATAGGAAAAGTCCATTTA
127 AACGTGAAACGAAAA-CCATCCATTGAAAACAAAAGTCCATCCA
* * * *
9545482 TAGTCACTCATGCCTTCAAAAGTCTTGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGAT
1 TA-TCACTCATGCCTTCGAAAGCCTAGTTACTTGCTTTAAATGGTTTTATAATCTTATAAATGAT
* * * *
9545547 TCTAAGTTGAATTTTTTTTATTTTTGATTAAAACAAATCAT-AATTGGAAT-TTTGC-TTCGAGA
65 TTTAAGTTGATTTTTTTTTATTTTTGGTTAAAACAAATCATAAATT--AATGTTTGCATT-AAGA
** * * ** *
9545609 AACGTGAGGC-AAAAGTCATCCATTGACAAGGAAAGTCCAGT-TA
127 AACGTGAAACGAAAA-CCATCCATTGAAAACAAAAGTCCA-TCCA
* * * * * * **
9545652 TAGTCACTCATACCTT-TAAGAGCCTTGTTGCTCGCTTTAAATGGTTTTTTAATCACATAAATGA
1 TA-TCACTCATGCCTTCGAA-AGCCTAGTTACTTGCTTTAAATGGTTTTATAATCTTATAAATGA
* * ** *
9545716 TTTAAAGTTGAAGTTTGTTTTTCATTTTCAGTTAAAACAGATCAT-AATTGAATGTTTGTC-TTA
64 TTTTAAGTTG-A-TTT-TTTTTTATTTTTGGTTAAAACAAATCATAAATT-AATGTTTG-CATTA
* * * * * * * * **
9545779 AGAAATGTGAAGCGATAGCTATCCATTGATAAGAAAAGTTCATTTA
124 AGAAACGTGAAACGAAAACCATCCATTGAAAACAAAAGTCCATCCA
* * * * ** **
9545825 TAGTCACTAATACCTTCAAAAGTC-ATGTTACTCACTTTAAGGGGTTTTATAA-CATTATAAATG
1 TA-TCACTCATGCCTTCGAAAGCCTA-GTTACTTGCTTTAAATGGTTTTATAATC-TTATAAATG
* * * * * * * * *
9545888 ATTTTAAATTGATTTTTTTTTCATTGTAT-GTT-AAAGATATAACAATTTGATGTTTGCATTAGG
63 ATTTTAAGTTGATTTTTTTTT-ATT-TTTGGTTAAAACAAATCATAAATTAATGTTTGCATTAAG
** * * * * * **
9545951 AAACGTGAAGTGAATGA-CTTCCACTGACAAGAAAAGTCCATTTA
126 AAACGTGAAACGAA-AACCATCCATTGAAAACAAAAGTCCATCCA
* * * * * *
9545995 CTGTCACACATGCCTTCGAAAGCCTTGTTACTCGCTTTAAGA-GGTTTTATAATTTTATAAATAA
1 -TATCACTCATGCCTTCGAAAGCCTAGTTACTTGCTTTAA-ATGGTTTTATAATCTTATAAATGA
* * ** * * * * * * **
9546059 CTTTTGA-TTGAATATTTTTCCATTTTTGGTGAAAATAGATCATAATTTGATGTTTGCGTTGGGA
64 -TTTTAAGTTG-ATTTTTTTTTATTTTTGGTTAAAACAAATCATAAATTAATGTTTGCATTAAGA
* * ** * * * *
9546123 ATCATGAAGGGAAAACCAT-TATTTCACAAGAAAAGTCCATCCA
127 AACGTGAAACGAAAACCATCCA-TTGAAAACAAAAGTCCATCCA
* * * * *
9546166 TTGTCAC-CATGCCTTTGGATGCCTAGTTACTTGCTATAAATGGTTTTATAATCTTATAAATGAT
1 -TATCACTCATGCCTTCGAAAGCCTAGTTACTTGCTTTAAATGGTTTTATAATCTTATAAATGAT
* * * * *
9546230 ATTAAGTTGAATTTTTTTTTTATTTTTGGTTAAAACAAATCATAATTTGATGTTTGCATGAGGAA
65 TTTAAGTTG-A-TTTTTTTTTATTTTTGGTTAAAACAAATCATAAATTAATGTTTGCATTAAGAA
* *
9546295 ACATGAAACGAAAGCCATCCATTGAAAA-AAAAGTCCAT
128 ACGTGAAACGAAAACCATCCATTGAAAACAAAAGTCCAT
9546333 TTACAGTCAC
Statistics
Matches: 2101, Mismatches: 497, Indels: 300
0.72 0.17 0.10
Matches are distributed among these distances:
158 2 0.00
159 10 0.00
160 9 0.00
161 3 0.00
162 2 0.00
164 3 0.00
165 1 0.00
166 2 0.00
167 14 0.01
168 15 0.01
169 32 0.02
170 740 0.35
171 624 0.30
172 371 0.18
173 136 0.06
174 7 0.00
176 9 0.00
177 4 0.00
178 13 0.01
179 5 0.00
180 8 0.00
181 12 0.01
182 4 0.00
183 3 0.00
186 1 0.00
187 1 0.00
188 2 0.00
189 4 0.00
190 5 0.00
191 13 0.01
192 9 0.00
193 6 0.00
194 1 0.00
195 4 0.00
197 3 0.00
198 5 0.00
199 8 0.00
200 7 0.00
201 3 0.00
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.39
Consensus pattern (169 bp):
TATCACTCATGCCTTCGAAAGCCTAGTTACTTGCTTTAAATGGTTTTATAATCTTATAAATGATT
TTAAGTTGATTTTTTTTTATTTTTGGTTAAAACAAATCATAAATTAATGTTTGCATTAAGAAACG
TGAAACGAAAACCATCCATTGAAAACAAAAGTCCATCCA
Found at i:9544524 original size:171 final size:169
Alignment explanation
Indices: 9543380--9546343 Score: 2310
Period size: 171 Copynumber: 17.2 Consensus size: 169
9543370 CAAGGTCTCA
* * ** * *
9543380 CAAATGCCTTCCATTAACAAGAAAAGTCTTTTTACTA-TCACACATGCCTTCGAAAGCCTTGTTA
1 CAAA-GCCATCCATTGACAAGAAAAGTCCATTTA-TAGTCACTCATGCCTTCGAAAGCCTAGTTA
* * * * * * *
9543444 CTTGCTTTAAGA-GGTTTTATAATTTTATAAATAACTTTAGATTG-ATTTTTTTCCATTTTTTGT
64 CTCGCTTTAA-ATGGTTTTATAATCTTATAAATGATTTTAAATTGAATTTTTTTTCATTTTTGGT
* * * * ***
9543507 GAAAACAGATCATAAATTAATGTTTGCATTGGGAATTGTGAAAG
128 TAAAACAGATCATAATTTGATGTTTGC-TTAGGAAACATG-AAG
* ** * ** *
9543551 GAAAATCGT-CACTTGACAAGAAAAGTCCATCCATTA-TCACTCATGCCTTCGAATGCCTAGTTA
1 CAAAGCCATCCA-TTGACAAGAAAAGTCCATTTA-TAGTCACTCATGCCTTCGAAAGCCTAGTTA
* * * * *
9543614 CTTGCTATAAATGGTTTTATAATCTTATAAATGATTTTAAGTTG-ATTTTTTTTTATTTCTGGTT
64 CTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTGAATTTTTTTTCATTTTTGGTT
* * * * *
9543678 AAAACAAATCATAATTTGATGTTTGTATTAAGAAACGTGAAA
129 AAAACAGATCATAATTTGATGTTTG-CTTAGGAAACATGAAG
* * *
9543720 CGAAAGCCATCCATTGAAAACAAAAGTCCATTTATAGTCACTTATGCCTTCGAAAGCCTAGTTAC
1 C-AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTAGTTAC
** * * *
9543785 TCATTTTAAATGGTTTTATAATCATATAAATGTTTTTAAGTTGAATTTGTTTTT-ATTTTTGGTT
65 TCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTGAATTT-TTTTTCATTTTTGGTT
* * * *
9543849 AAAACAAATCATAATTCGAGGTTTGCATCAAGGAAACATGAAG
129 AAAACAGATCATAATTTGATGTTTGC-T-TAGGAAACATGAAG
** * * * *
9543892 CGAAAATCATCCATTGATAAGAAAAGTCCATTTATAGTTACTCATGCTTTCGAAAGCGTAGTTAC
1 C-AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTAGTTAC
* ** ** *
9543957 TCGCTTTAAGTATTTTTATAA-CTTTATAAATGATTTTGGATTGAATTTTTTTTCATTTTAGGTT
65 TCGCTTTAAATGGTTTTATAATC-TTATAAATGATTTTAAATTGAATTTTTTTTCATTTTTGGTT
* * * * ** *
9544021 AAAATAGATCGTAA-TAGATGTTTGTCTCAAAAAACGTGAAG
129 AAAACAGATCATAATTTGATGTTTG-CTTAGGAAACATGAAG
* *
9544062 CAAAAGCCATCCGTTGACAAGAAAAGTCCATTTATAGTCA-TCCATGCCTTCGAAAGTCTAG-TA
1 C-AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACT-CATGCCTTCGAAAGCCTAGTTA
* * * * * * * * * *
9544125 GCTCACTTTGAGTGGTATTACAATCTTATAAATGATTTTAAGTTGAATTGTTTTACTTTTTTTGT
64 -CTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTGAATTTTTTTTCATTTTTGGT
* * *
9544190 TAAAACAGATCATAA-TTGAATGTTTTTCTT-GGTAACATGAAT
128 TAAAACAGATCATAATTTG-ATG-TTTGCTTAGGAAACATGAAG
* * * * * *
9544232 CAAAAGCTATCCATTGACATGAAAGGTCCATTTATAGTTACTTATGTCTTCGAAAGCCTAGTTAC
1 C-AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTAGTTAC
** * ***
9544297 TCGCTTTAAATAATTTTATAATTTTATAAATGATACAAAATTGAATTTTTTTTTCATTTTTGGTT
65 TCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTGAA-TTTTTTTTCATTTTTGGTT
* * * * *
9544362 AAAATAAAACATAATTTGATGTTTGTCTTAGGAAACGTGAAT
129 AAAACAGATCATAATTTGATGTTTG-CTTAGGAAACATGAAG
* * ** *
9544404 CAAATTCCATCCATTGACAAAAAAAGTCCATTTAT-GTTCACTCATGCCTTTAAAAGACTAGTTA
1 CAAA-GCCATCCATTGACAAGAAAAGTCCATTTATAG-TCACTCATGCCTTCGAAAGCCTAGTTA
* * * * * **
9544468 CTCGCTTGAAGTAGTTTTATAA-CTTTATAAGTGATTTCAAATTGAATTTTTTTTCATTTTTCAT
64 CTCGCTTTAAATGGTTTTATAATC-TTATAAATGATTTTAAATTGAATTTTTTTTCATTTTTGGT
* * * * * *
9544532 TAAAACAAATCTTAATTTAATGTTTTCACTGGGAAACATGAAG
128 TAAAACAGATCATAATTTGATGTTTGC-TTAGGAAACATGAAG
* * * * *
9544575 TGAAAGCCATCCATTGAGAAGAAAAGTCCATTTATAGTCACTCATACTTTCAAAAGCCTAGTTAC
1 -CAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTAGTTAC
* * * * *
9544640 TCGCTTTAAATGGTTTTATAATCTTATAAATGTTTTTAAATTGAACTTTTTGTCATTTTTGCTTC
65 TCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTGAATTTTTTTTCATTTTTGGTTA
* * * *
9544705 AAACATATCACAATTTGATGCTTGGCTTGGGAAACATGAAG
130 AAACAGATCATAATTTGATG-TTTGCTTAGGAAACATGAAG
* * * ** * *
9544746 TGAAAGCCATCCATGGACAAGAAAAGTCCA-TTATAGTCACTCATTCCTTTCGAAAGTGTTGGTA
1 -CAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCC-TTCGAAAGCCTAGTTA
* ** * * * * *
9544810 CTCGCTTTAAGTCATTCTATAAAT-TTATAAATAATTTTAAGTTTAATTTTTTTTTTCA-TTTTC
64 CTCGCTTTAAATGGTTTTAT-AATCTTATAAATGATTTTAAATTGAA--TTTTTTTTCATTTTTG
* * * * * *
9544873 ATTAAAACGGAACATAATTTGATATTCGCATTGGGAAACATGAAG
126 GTTAAAACAGATCATAATTTGATGTTTGC-TTAGGAAACATGAAG
* * * *
9544918 CGAAAGCTATCCGTTGACAAGAAAAGTCCATTTATAGTCATTCATGCCTTCAAAAGCCTAGTTAC
1 C-AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTAGTTAC
* * *
9544983 TCACTTCAAGTGGTTTTATAAAT-TTATAAATGATTTTATAAATTTATGAATGATTTTAGAATGA
65 TCGCTTTAAATGGTTTTAT-AATCTTATAAATGA-TTT-TAAA--T-TG-A--A---T----T--
** * * ** * *** *
9545047 TTTTTTCATTTTTCATTAAAATAGGTTGTAATTTGATGTTTGCATTAGCAATTGTAAAG
112 TTTTTTCATTTTTGGTTAAAACAGATCATAATTTGATGTTTGC-TTAGGAAACATGAAG
* * * * *
9545106 TGAAAGCCATCCATTGATAAGAAAAGTCCATTTGTAGTCACTCATGCCTTTGAAAGCCTAATTAC
1 -CAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTAGTTAC
* ** * *
9545171 TCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAACTTGAATTGGTTTTCATTTTTTGTTC
65 TCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTGAATTTTTTTTCATTTTTGGTTA
* * * *
9545236 AAACAGATCATAATTGGATGTTTGC-CATGAGACATGTGAAG
130 AAACAGATCATAATTTGATGTTTGCTTAGGAAACA--TGAAG
* * * * **
9545277 TGAAAGCCATCCAGTGATAAGAAAAGTCCATTTATAGTCACCCATGCCTTCGAAAGCCTTCTTAC
1 -CAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTAGTTAC
* * * * * * **
9545342 TTGTTTTAAGTGTTTTTATAA-CTTTATAGATGATTTTAAATTGAATTTGTTTTCATTTTTCATT
65 TCGCTTTAAATGGTTTTATAATC-TTATAAATGATTTTAAATTGAATTTTTTTTCATTTTTGGTT
* ** * *
9545406 AAAACATATTGTAATTTAATGTTTGCATAGGGAAACATGAAG
129 AAAACAGATCATAATTTGATGTTTGCTTA-GGAAACATGAAG
* * * * * * *
9545448 CAAAAGACATCTATTGATAGGAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGTCTTGTTAC
1 C-AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTAGTTAC
* * *
9545513 TCGCTTTAAATGGTTTTATAATCTTATAAATGATTCTAAGTTGAATTTTTTTT-ATTTTTGATTA
65 TCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTGAATTTTTTTTCATTTTTGGTTA
* * * * *
9545577 AAACAAATCATAATTGGAAT-TTTGCTTCGAGAAACGTGAGG
130 AAACAGATCATAATTTG-ATGTTTGCTTAG-GAAACATGAAG
* * * * * * *
9545618 CAAAAGTCATCCATTGACAAGGAAAGTCCAGTTATAGTCACTCATACCTT-TAAGAGCCTTGTTG
1 C-AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAA-AGCCTAGTTA
* ** **
9545682 CTCGCTTTAAATGGTTTTTTAATCACATAAATGA-TTTAAAGTTGAAGTTTGTTTTTCATTTTCA
64 CTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAA-TTGAA-TTT-TTTTTCATTTTTG
* **
9545746 GTTAAAACAGATCATAA-TTGAATGTTTGTCTTAAGAAATGTGAAG
126 GTTAAAACAGATCATAATTTG-ATGTTTG-CTTAGGAAACATGAAG
* * * * * * * *
9545791 CGATAGCTATCCATTGATAAGAAAAGTTCATTTATAGTCACTAATACCTTCAAAAGTC-ATGTTA
1 C-AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTA-GTTA
* ** * *
9545855 CTCACTTTAAGGGGTTTTATAA-CATTATAAATGATTTTAAATTGATTTTTTTTTCATTGTAT-G
64 CTCGCTTTAAATGGTTTTATAATC-TTATAAATGATTTTAAATTGAATTTTTTTTCATT-TTTGG
* * * * *
9545918 TT-AAAGATATAACAATTTGATGTTTGCATTAGGAAACGTGAAG
127 TTAAAACAGATCATAATTTGATGTTTGC-TTAGGAAACATGAAG
* * * * * * *
9545961 TGAATGACTTCCACTGACAAGAAAAGTCCATTTACT-GTCACACATGCCTTCGAAAGCCTTGTTA
1 -CAAAGCCATCCATTGACAAGAAAAGTCCATTTA-TAGTCACTCATGCCTTCGAAAGCCTAGTTA
* * * * *
9546025 CTCGCTTTAAGA-GGTTTTATAATTTTATAAATAACTTTT-GATTGAATATTTTTCCATTTTTGG
64 CTCGCTTTAA-ATGGTTTTATAATCTTATAAATGA-TTTTAAATTGAATTTTTTTTCATTTTTGG
* * * *
9546088 TGAAAATAGATCATAATTTGATGTTTGCGTTGGGAATCATGAAGG
127 TTAAAACAGATCATAATTTGATGTTTGC-TTAGGAAACATGAA-G
* * * * ** * * * *
9546133 GAAAACCAT-TATTTCACAAGAAAAGTCCATCCATTGTCAC-CATGCCTTTGGATGCCTAGTTAC
1 CAAAGCCATCCA-TTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTAGTTAC
* * * * *
9546196 TTGCTATAAATGGTTTTATAATCTTATAAATGATATTAAGTTGAATTTTTTTTTTATTTTTGGTT
65 TCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTGAA-TTTTTTTTCATTTTTGGTT
* * *
9546261 AAAACAAATCATAATTTGATGTTTGCATGAGGAAACATGAAA
129 AAAACAGATCATAATTTGATGTTTGC-TTAGGAAACATGAAG
* *
9546303 CGAAAGCCATCCATTGA-AAAAAAAGTCCATTTACAGTCACT
1 C-AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACT
9546344 ATTAGCTTCA
Statistics
Matches: 2224, Mismatches: 472, Indels: 194
0.77 0.16 0.07
Matches are distributed among these distances:
169 26 0.01
170 759 0.34
171 776 0.35
172 359 0.16
173 142 0.06
174 14 0.01
176 1 0.00
177 2 0.00
178 1 0.00
180 2 0.00
181 3 0.00
182 1 0.00
183 2 0.00
184 1 0.00
185 1 0.00
186 3 0.00
187 14 0.01
188 117 0.05
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.38
Consensus pattern (169 bp):
CAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTAGTTACT
CGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTGAATTTTTTTTCATTTTTGGTTAA
AACAGATCATAATTTGATGTTTGCTTAGGAAACATGAAG
Found at i:9545021 original size:20 final size:20
Alignment explanation
Indices: 9544996--9545040 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
9544986 CTTCAAGTGG
9544996 TTTTATAAATTTATAAATGA
1 TTTTATAAATTTATAAATGA
*
9545016 TTTTATAAATTTATGAATGA
1 TTTTATAAATTTATAAATGA
9545036 TTTTA
1 TTTTA
9545041 GAATGATTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (20 bp):
TTTTATAAATTTATAAATGA
Found at i:9561217 original size:20 final size:20
Alignment explanation
Indices: 9561192--9561232 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
9561182 TAATGAATGC
* *
9561192 TTGATGATGATTGATAATAA
1 TTGATGATAATTGAGAATAA
9561212 TTGATGATAATTGAGAATAA
1 TTGATGATAATTGAGAATAA
9561232 T
1 T
9561233 GCTTAAAGAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.41, C:0.00, G:0.20, T:0.39
Consensus pattern (20 bp):
TTGATGATAATTGAGAATAA
Found at i:9570453 original size:21 final size:22
Alignment explanation
Indices: 9570428--9570468 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
9570418 CCTAGGTGGA
*
9570428 AAAATTCAAGGGAA-AAGTGTG
1 AAAATTCAAGGAAACAAGTGTG
9570449 AAAATTCAAGGAAACAAGTG
1 AAAATTCAAGGAAACAAGTG
9570469 AAAAAAGGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.51, C:0.07, G:0.24, T:0.17
Consensus pattern (22 bp):
AAAATTCAAGGAAACAAGTGTG
Found at i:9570469 original size:20 final size:21
Alignment explanation
Indices: 9570428--9570472 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
9570418 CCTAGGTGGA
*
9570428 AAAATTCAAGGGAAAAGTGTG
1 AAAATTCAAGGGAAAAGAGTG
9570449 AAAATTCAA-GGAAACA-AGTG
1 AAAATTCAAGGGAAA-AGAGTG
9570469 AAAA
1 AAAA
9570473 AAGGTAAGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 12 0.55
21 10 0.45
ACGTcount: A:0.56, C:0.07, G:0.22, T:0.16
Consensus pattern (21 bp):
AAAATTCAAGGGAAAAGAGTG
Found at i:9570473 original size:21 final size:20
Alignment explanation
Indices: 9570426--9570473 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 20
9570416 ACCCTAGGTG
*
9570426 GAAAAATTCAAGGGAAAAGT
1 GAAAAATTCAAGGAAAAAGT
*
9570446 GTGAAAATTCAAGGAAACAAGT
1 G-AAAAATTCAAGGAAA-AAGT
9570468 GAAAAA
1 GAAAAA
9570474 AGGTAAGATT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 17 0.74
22 5 0.22
ACGTcount: A:0.56, C:0.06, G:0.23, T:0.15
Consensus pattern (20 bp):
GAAAAATTCAAGGAAAAAGT
Found at i:9575013 original size:22 final size:22
Alignment explanation
Indices: 9574966--9575022 Score: 69
Period size: 22 Copynumber: 2.6 Consensus size: 22
9574956 AATCCCAATG
* *
9574966 TCGCTGCAACGAAAATTCATTC
1 TCGCTGCAGCGAAAATGCATTC
* *
9574988 TCGCTGCAGCGAAAATGCCTTT
1 TCGCTGCAGCGAAAATGCATTC
*
9575010 TCGCTGTAGCGAA
1 TCGCTGCAGCGAA
9575023 GATTCGTTGT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (22 bp):
TCGCTGCAGCGAAAATGCATTC
Found at i:9577806 original size:29 final size:30
Alignment explanation
Indices: 9577737--9577808 Score: 74
Period size: 29 Copynumber: 2.4 Consensus size: 30
9577727 CTAGAAGAAG
*
9577737 TCAGCGTGTCACGCCATAAGTCTGAATTAAC
1 TCAGCGTGTCACGCCA-AAGTCTGAATGAAC
* * * * *
9577768 TTATCTTGTCACGCC-AAGTCTGCATGCAC
1 TCAGCGTGTCACGCCAAAGTCTGAATGAAC
9577797 TCAGCGTGTCAC
1 TCAGCGTGTCAC
9577809 CATAATTGGC
Statistics
Matches: 32, Mismatches: 9, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
29 20 0.62
31 12 0.38
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (30 bp):
TCAGCGTGTCACGCCAAAGTCTGAATGAAC
Found at i:9577860 original size:115 final size:115
Alignment explanation
Indices: 9577659--9578147 Score: 655
Period size: 115 Copynumber: 4.3 Consensus size: 115
9577649 CAATTTGGCT
* * *
9577659 TGTCACGCCAAGTCTGCATGCACTCAGCTTGTCACCATAATTGGCCCCTGTCGTGTCACCCGCCA
1 TGTCACGCCAAGTCTGCATGCACTCAACGTGTCACCATAATTGGCCCCTGCCGTGTCACCCGCCA
* * *
9577724 AGACTAG-AAGAAGTCAGCGTGTCACGCCATAAGTCTGAATTAACTTATCT
66 AGACT-GCAAGAAGTCAGCGTGTCACGCCATAAGTCTGAATTAACTCAACG
* ** * **
9577774 TGTCACGCCAAGTCTGCATGCACTCAGCGTGTCACCATAATTGGCCTTTACCGTGTCACTTGCCA
1 TGTCACGCCAAGTCTGCATGCACTCAACGTGTCACCATAATTGGCCCCTGCCGTGTCACCCGCCA
* * *
9577839 AGACTAG-AAGAAGTCAACGTGTCACGTCAT-AGTCTGAATTAACTCAGCG
66 AGACT-GCAAGAAGTCAGCGTGTCACGCCATAAGTCTGAATTAACTCAACG
* * * ***
9577888 TGTCACGCCAAGTCTGCATGCACTCAACGTGTCACCACAATTGGCCCCTGCTGTGTAACCCTATA
1 TGTCACGCCAAGTCTGCATGCACTCAACGTGTCACCATAATTGGCCCCTGCCGTGTCACCCGCCA
* *
9577953 AGACTGCAACAAGTCAGCGTGTCACGCCATAAGTCTAAATTAACTCAACG
66 AGACTGCAAGAAGTCAGCGTGTCACGCCATAAGTCTGAATTAACTCAACG
*
9578003 TGTCACGCCAAGTCTGCATGCATTCAACGTGTCACCATAATTGGCCCCTG-CGATGTCACCC-CA
1 TGTCACGCCAAGTCTGCATGCACTCAACGTGTCACCATAATTGGCCCCTGCCG-TGTCACCCGC-
* * *
9578066 CAAGACTGTAATAAGTCAGCGTGTCACGCCATAAGTCTGTATTAACTCAACG
64 CAAGACTGCAAGAAGTCAGCGTGTCACGCCATAAGTCTGAATTAACTCAACG
*
9578118 TGTGACGCCAAGTCTGCATGCACTCAACGT
1 TGTCACGCCAAGTCTGCATGCACTCAACGT
9578148 AGCATCCACT
Statistics
Matches: 329, Mismatches: 41, Indels: 8
0.87 0.11 0.02
Matches are distributed among these distances:
113 1 0.00
114 95 0.29
115 233 0.71
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (115 bp):
TGTCACGCCAAGTCTGCATGCACTCAACGTGTCACCATAATTGGCCCCTGCCGTGTCACCCGCCA
AGACTGCAAGAAGTCAGCGTGTCACGCCATAAGTCTGAATTAACTCAACG
Found at i:9577892 original size:30 final size:29
Alignment explanation
Indices: 9577825--9577922 Score: 90
Period size: 29 Copynumber: 3.3 Consensus size: 29
9577815 TGGCCTTTAC
* *
9577825 CGTGTCACTTGCCAAGACTAGAA-GAAGTCAA
1 CGTGTCAC--GCCAAGTCT-GAATGAACTCAA
* * *
9577856 CGTGTCACGTCATAGTCTGAATTAACTCAG
1 CGTGTCACGCCA-AGTCTGAATGAACTCAA
* *
9577886 CGTGTCACGCCAAGTCTGCATGCACTCAA
1 CGTGTCACGCCAAGTCTGAATGAACTCAA
9577915 CGTGTCAC
1 CGTGTCAC
9577923 CACAATTGGC
Statistics
Matches: 55, Mismatches: 10, Indels: 6
0.77 0.14 0.08
Matches are distributed among these distances:
29 27 0.49
30 20 0.36
31 8 0.15
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (29 bp):
CGTGTCACGCCAAGTCTGAATGAACTCAA
Found at i:9578036 original size:229 final size:230
Alignment explanation
Indices: 9577659--9578147 Score: 666
Period size: 229 Copynumber: 2.1 Consensus size: 230
9577649 CAATTTGGCT
* * * * *
9577659 TGTCACGCCAAGTCTGCATGCACTCAGCTTGTCACCATAATTGGCCCCTGTCGTGTCACCCGCCA
1 TGTCACGCCAAGTCTGCATGCACTCAACGTGTCACCACAATTGGCCCCTGTCGTGTAACCCGACA
* * * * *
9577724 AGACTAGAAGAAGTCAGCGTGTCACGCCATAAGTCTGAATTAACTTATCTTGTCACGCCAAGTCT
66 AGACTAGAACAAGTCAGCGTGTCACGCCATAAGTCTAAATTAACTCAACGTGTCACGCCAAGTCT
* ** **
9577789 GCATGCACTCAGCGTGTCACCATAATTGGCCTTTACCG-TGTCACTTGC-CAAGACTAG-AAGAA
131 GCATGCACTCAACGTGTCACCATAATTGGCCCCT-CCGATGTCAC-CCCACAAGACT-GTAAGAA
* *
9577851 GTCAACGTGTCACGTCAT-AGTCTGAATTAACTCAGCG
193 GTCAACGTGTCACGCCATAAGTCTGAATTAACTCAACG
* *
9577888 TGTCACGCCAAGTCTGCATGCACTCAACGTGTCACCACAATTGGCCCCTG-CTGTGTAACCCTAT
1 TGTCACGCCAAGTCTGCATGCACTCAACGTGTCACCACAATTGGCCCCTGTC-GTGTAACCCGAC
9577952 AAGACT-GCAACAAGTCAGCGTGTCACGCCATAAGTCTAAATTAACTCAACGTGTCACGCCAAGT
65 AAGACTAG-AACAAGTCAGCGTGTCACGCCATAAGTCTAAATTAACTCAACGTGTCACGCCAAGT
* * *
9578016 CTGCATGCATTCAACGTGTCACCATAATTGGCCCCTGCGATGTCACCCCACAAGACTGTAATAAG
129 CTGCATGCACTCAACGTGTCACCATAATTGGCCCCTCCGATGTCACCCCACAAGACTGTAAGAAG
* *
9578081 TCAGCGTGTCACGCCATAAGTCTGTATTAACTCAACG
194 TCAACGTGTCACGCCATAAGTCTGAATTAACTCAACG
*
9578118 TGTGACGCCAAGTCTGCATGCACTCAACGT
1 TGTCACGCCAAGTCTGCATGCACTCAACGT
9578148 AGCATCCACT
Statistics
Matches: 229, Mismatches: 25, Indels: 11
0.86 0.09 0.04
Matches are distributed among these distances:
228 6 0.03
229 177 0.77
230 46 0.20
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (230 bp):
TGTCACGCCAAGTCTGCATGCACTCAACGTGTCACCACAATTGGCCCCTGTCGTGTAACCCGACA
AGACTAGAACAAGTCAGCGTGTCACGCCATAAGTCTAAATTAACTCAACGTGTCACGCCAAGTCT
GCATGCACTCAACGTGTCACCATAATTGGCCCCTCCGATGTCACCCCACAAGACTGTAAGAAGTC
AACGTGTCACGCCATAAGTCTGAATTAACTCAACG
Found at i:9578106 original size:31 final size:31
Alignment explanation
Indices: 9578056--9578127 Score: 81
Period size: 31 Copynumber: 2.3 Consensus size: 31
9578046 GCCCCTGCGA
* * *
9578056 TGTCACCCCACAAGACTGTAATAAGTCAGCG
1 TGTCACGCCACAAGACTGTAATAACTCAACG
* * *
9578087 TGTCACGCCATAAGTCTGTATTAACTCAACG
1 TGTCACGCCACAAGACTGTAATAACTCAACG
*
9578118 TGTGACGCCA
1 TGTCACGCCA
9578128 AGTCTGCATG
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (31 bp):
TGTCACGCCACAAGACTGTAATAACTCAACG
Found at i:9582842 original size:31 final size:31
Alignment explanation
Indices: 9582806--9583408 Score: 882
Period size: 31 Copynumber: 19.5 Consensus size: 31
9582796 GTTGTTATAT
* *
9582806 GCCATGTATATAACGTAAAATGTTGTAACAC
1 GCCATGCATATAACGTAAAATGTGGTAACAC
*
9582837 ACCATGCATATAACGTAAAATGTGGTAACAC
1 GCCATGCATATAACGTAAAATGTGGTAACAC
*
9582868 GCCATGCATATAACGTAAAATGTGGTAACAT
1 GCCATGCATATAACGTAAAATGTGGTAACAC
* *
9582899 GCCATGCATATAACGTAAAATGTTGTAACAT
1 GCCATGCATATAACGTAAAATGTGGTAACAC
* ** *
9582930 GCCATGCATATAACGTAAAATGTTGTTGCAA
1 GCCATGCATATAACGTAAAATGTGGTAACAC
* *
9582961 GCCATGCATATAACGTAAAATGTTGTACCAC
1 GCCATGCATATAACGTAAAATGTGGTAACAC
*
9582992 GCCATGCATATAATGTAAAATGTGGTAACAC
1 GCCATGCATATAACGTAAAATGTGGTAACAC
*
9583023 GCCATGCATATAGCGTAAAATGTGGTAACAC
1 GCCATGCATATAACGTAAAATGTGGTAACAC
* * *
9583054 ACCATACATAAAACGTAAAATGTGGTAACAC
1 GCCATGCATATAACGTAAAATGTGGTAACAC
* *
9583085 GCCATGCATATAATGAAAAATGTGGTAACAC
1 GCCATGCATATAACGTAAAATGTGGTAACAC
*
9583116 GCCATGCATATAACGTAAAATGTTGTAACAC
1 GCCATGCATATAACGTAAAATGTGGTAACAC
* * * *
9583147 GTCAAGCATATAACGTAAAATGTTGTTACAC
1 GCCATGCATATAACGTAAAATGTGGTAACAC
* * *
9583178 GCCATGCATATAATGTAAAATGTTGTTACAC
1 GCCATGCATATAACGTAAAATGTGGTAACAC
**
9583209 GCCATGCATATAACGTAAAATGTTATAACAC
1 GCCATGCATATAACGTAAAATGTGGTAACAC
9583240 GCCATGCATATAACGTAAAATGTGGTAACAC
1 GCCATGCATATAACGTAAAATGTGGTAACAC
*
9583271 GCCATGCATATAGCGTAAAATGTGGTAACAC
1 GCCATGCATATAACGTAAAATGTGGTAACAC
* *
9583302 GCCATGCATATGACGTAAAATGTCGTAACAC
1 GCCATGCATATAACGTAAAATGTGGTAACAC
9583333 GCCATGCATATAACGTAAAATGTGGTAACAC
1 GCCATGCATATAACGTAAAATGTGGTAACAC
* *
9583364 GCAATGCATATAACATAAAATGTGGTAACAC
1 GCCATGCATATAACGTAAAATGTGGTAACAC
* *
9583395 GCTATACATATAAC
1 GCCATGCATATAAC
9583409 CAATGTCGTG
Statistics
Matches: 522, Mismatches: 50, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 522 1.00
ACGTcount: A:0.39, C:0.18, G:0.17, T:0.25
Consensus pattern (31 bp):
GCCATGCATATAACGTAAAATGTGGTAACAC
Found at i:9584069 original size:3 final size:3
Alignment explanation
Indices: 9584061--9584100 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
9584051 AAAGGAACAT
9584061 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
9584101 ATAGTGTCTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:9589269 original size:25 final size:25
Alignment explanation
Indices: 9589240--9589291 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
9589230 CAAATTGGAA
9589240 GCTTTAATGTTTTGGATATAATAAT
1 GCTTTAATGTTTTGGATATAATAAT
9589265 GCTTTAATGTTTTGGATATAATAAT
1 GCTTTAATGTTTTGGATATAATAAT
9589290 GC
1 GC
9589292 ATATTTACTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.31, C:0.06, G:0.17, T:0.46
Consensus pattern (25 bp):
GCTTTAATGTTTTGGATATAATAAT
Found at i:9590510 original size:24 final size:24
Alignment explanation
Indices: 9590483--9590535 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
9590473 TCCGATCACC
* *
9590483 CCACCGCCACCTCATATACACCCT
1 CCACCGCCACCCCATATACACCCA
* * *
9590507 CCACCTCCACCCCATGTACATCCA
1 CCACCGCCACCCCATATACACCCA
9590531 CCACC
1 CCACC
9590536 AGCACCACTT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.25, C:0.57, G:0.04, T:0.15
Consensus pattern (24 bp):
CCACCGCCACCCCATATACACCCA
Found at i:9596569 original size:26 final size:26
Alignment explanation
Indices: 9596540--9596589 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
9596530 TAAGGCATCC
*
9596540 ATCCACTTTTGATGATAAAATTATCT
1 ATCCACTTTTAATGATAAAATTATCT
*
9596566 ATCCACTTTTAATGGTAAAATTAT
1 ATCCACTTTTAATGATAAAATTAT
9596590 TCTTAGATTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.36, C:0.14, G:0.08, T:0.42
Consensus pattern (26 bp):
ATCCACTTTTAATGATAAAATTATCT
Found at i:9598058 original size:24 final size:25
Alignment explanation
Indices: 9598006--9598059 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
9597996 AAAATTAATT
**
9598006 ATAAATAATATTTTTTCAAAGTATT
1 ATAAATAATATTTTTTCAAAGTAAA
*
9598031 ATAAATAATATTTTTTC-ATGTAAA
1 ATAAATAATATTTTTTCAAAGTAAA
9598055 ATAAA
1 ATAAA
9598060 AAAATAAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
24 9 0.35
25 17 0.65
ACGTcount: A:0.48, C:0.04, G:0.04, T:0.44
Consensus pattern (25 bp):
ATAAATAATATTTTTTCAAAGTAAA
Found at i:9602447 original size:19 final size:20
Alignment explanation
Indices: 9602403--9602447 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
9602393 TTATTTAGTA
9602403 TAATTATCTACATTAATTAT
1 TAATTATCTACATTAATTAT
* * *
9602423 TGATTAT-TATATTAATTTT
1 TAATTATCTACATTAATTAT
9602442 TAATTA
1 TAATTA
9602448 ATTAATTTTA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.56
Consensus pattern (20 bp):
TAATTATCTACATTAATTAT
Found at i:9607128 original size:19 final size:18
Alignment explanation
Indices: 9607095--9607130 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
9607085 CAATGCTAAT
*
9607095 ATAAATAAAAAAATGAAA
1 ATAAACAAAAAAATGAAA
9607113 ATAAACAAATAAAATGAA
1 ATAAACAAA-AAAATGAA
9607131 CTAAATGGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.75, C:0.03, G:0.06, T:0.17
Consensus pattern (18 bp):
ATAAACAAAAAAATGAAA
Found at i:9612106 original size:2 final size:2
Alignment explanation
Indices: 9612101--9612139 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
9612091 TGTTCTTTTC
9612101 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
9612140 TACTGTGTTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:9615658 original size:30 final size:29
Alignment explanation
Indices: 9615584--9615659 Score: 84
Period size: 29 Copynumber: 2.6 Consensus size: 29
9615574 TTTAAAAATT
9615584 TTAAATAAATTTTTAT-TCATTTATTATG
1 TTAAATAAATTTTTATATCATTTATTATG
* * *
9615612 TTAAATTAAGTTTTTATAT-TTTTATTTTG
1 TTAAA-TAAATTTTTATATCATTTATTATG
9615641 TATCAAATAAATTTTTATA
1 T-T-AAATAAATTTTTATA
9615660 ACTAATAGTT
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
28 5 0.12
29 19 0.47
30 13 0.32
31 3 0.08
ACGTcount: A:0.36, C:0.03, G:0.04, T:0.58
Consensus pattern (29 bp):
TTAAATAAATTTTTATATCATTTATTATG
Found at i:9618123 original size:30 final size:31
Alignment explanation
Indices: 9618055--9618132 Score: 83
Period size: 30 Copynumber: 2.5 Consensus size: 31
9618045 AGTAAAGTTT
*
9618055 AAATAAATTTTT--ATTTATTTTATTATGTC
1 AAATAAATTTTTAAATTTATTTTATTAAGTC
*
9618084 TAATCAAATTTTTAAATTT-TTATT-TTAAGTC
1 AAAT-AAATTTTTAAATTTATT-TTATTAAGTC
9618115 AAATAAATTTTTATAATT
1 AAATAAATTTTTA-AATT
9618133 AACGATTAAT
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
29 3 0.07
30 17 0.41
31 15 0.37
32 6 0.15
ACGTcount: A:0.38, C:0.04, G:0.03, T:0.55
Consensus pattern (31 bp):
AAATAAATTTTTAAATTTATTTTATTAAGTC
Found at i:9619083 original size:50 final size:50
Alignment explanation
Indices: 9619022--9619137 Score: 187
Period size: 50 Copynumber: 2.3 Consensus size: 50
9619012 ATAATGGATG
* *
9619022 TCTTATTTAAAGGATGGTGAGAATTGAGATGACAAATACACTAGCTTTTA
1 TCTTATATAAAGGATGGTGAGAATTGAGAGGACAAATACACTAGCTTTTA
*
9619072 TCTTATATAAAGGATGGTGAGAATTGAGAGGACAATTACACTAGCTTTTA
1 TCTTATATAAAGGATGGTGAGAATTGAGAGGACAAATACACTAGCTTTTA
* *
9619122 TCTCATATAAAAGATG
1 TCTTATATAAAGGATG
9619138 CTTTGGGCCG
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
50 61 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.33
Consensus pattern (50 bp):
TCTTATATAAAGGATGGTGAGAATTGAGAGGACAAATACACTAGCTTTTA
Found at i:9623309 original size:142 final size:142
Alignment explanation
Indices: 9622719--9623279 Score: 1020
Period size: 142 Copynumber: 4.0 Consensus size: 142
9622709 GTCGAAATAA
9622719 TATCAATTTTAAAGTCCAAAATCAAAACAAGTATTAAATCCTAATTCCATAGTGTCAAATATCAA
1 TATCAATTTTAAAGTCCAAAATCAAAACAAGTATTAAATCCTAATTCCATAGTGTCAAATATCAA
* * * *
9622784 TTTAAACAACTCATGGAGTGCTAGATAGCTTGAACAATCAAATCAAAGAGTTTTGTAACACCAAA
66 TTTAAATAGCTCATGGAGTGCTAGATAGCTTGAACAATCAAATCAAAGTGTTTCGTAACACCAAA
9622849 GTGGTCAGATGC
131 GTGGTCAGATGC
9622861 TATCAATTTTAAAGTCCAAAATCAAAACAAGTATTAAATCCTAATTCCATAGTGTCAAATATC--
1 TATCAATTTTAAAGTCCAAAATCAAAACAAGTATTAAATCCTAATTCCATAGTGTCAAATATCAA
9622924 -TTAAATAGCTCATGGAGTGCTAGATAGCTTGAACAATCAAATCAAAGTGTTTCGTAACACCAAA
66 TTTAAATAGCTCATGGAGTGCTAGATAGCTTGAACAATCAAATCAAAGTGTTTCGTAACACCAAA
*
9622988 GTGGTCAGACGC
131 GTGGTCAGATGC
*
9623000 TATCAATTTTAAAGTCCAAAATCAAAACAAGAATTAAATCCTAATTCCATAGTGTCAAATATCAA
1 TATCAATTTTAAAGTCCAAAATCAAAACAAGTATTAAATCCTAATTCCATAGTGTCAAATATCAA
9623065 TTTAAATAGCTCATGGAGTGCTAGATAGCTTGAACAATCAAATCAAAGTGTTTCGTAACACCAAA
66 TTTAAATAGCTCATGGAGTGCTAGATAGCTTGAACAATCAAATCAAAGTGTTTCGTAACACCAAA
9623130 GTGGTCAGATGC
131 GTGGTCAGATGC
*
9623142 TATCAATTTTAAAGTCAAAAATCAAAACAAGTATTAAATCCTAATTCCATAGTGTCAAATATCAA
1 TATCAATTTTAAAGTCCAAAATCAAAACAAGTATTAAATCCTAATTCCATAGTGTCAAATATCAA
* *
9623207 TTTAAATAGCTCATGGAGTGCTAGATAGCTCGAATAATCAAATCAAAGTGTTTCGTAACACCAAA
66 TTTAAATAGCTCATGGAGTGCTAGATAGCTTGAACAATCAAATCAAAGTGTTTCGTAACACCAAA
9623272 GTGGTCAG
131 GTGGTCAG
9623280 TTTCATGATA
Statistics
Matches: 405, Mismatches: 11, Indels: 6
0.96 0.03 0.01
Matches are distributed among these distances:
139 133 0.33
142 272 0.67
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (142 bp):
TATCAATTTTAAAGTCCAAAATCAAAACAAGTATTAAATCCTAATTCCATAGTGTCAAATATCAA
TTTAAATAGCTCATGGAGTGCTAGATAGCTTGAACAATCAAATCAAAGTGTTTCGTAACACCAAA
GTGGTCAGATGC
Found at i:9623329 original size:85 final size:85
Alignment explanation
Indices: 9623238--9623401 Score: 238
Period size: 85 Copynumber: 1.9 Consensus size: 85
9623228 TAGATAGCTC
* * * * *
9623238 GAATAATCAAATCAAAGTGTTTCGTAACACCAAAGTGGTCAGTTTCATGATAGTCATCAATCGTA
1 GAATAATCAAATCAAAGTGCTCCGTAACACCAAAGTGGTCAGATACATGATAGTCATCAACCGTA
*
9623303 TATCAAAGGAGGTATAGCAT
66 TATCAAAAGAGGTATAGCAT
* * * *
9623323 GAATAATCAAATCAAAGTGCTCCGTAACACTAAAGTGGTCAGATACATGATAGTTATCGACCGTC
1 GAATAATCAAATCAAAGTGCTCCGTAACACCAAAGTGGTCAGATACATGATAGTCATCAACCGTA
9623388 TATCAAAAGAGGTA
66 TATCAAAAGAGGTA
9623402 GGATTGTATC
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
85 69 1.00
ACGTcount: A:0.38, C:0.16, G:0.19, T:0.26
Consensus pattern (85 bp):
GAATAATCAAATCAAAGTGCTCCGTAACACCAAAGTGGTCAGATACATGATAGTCATCAACCGTA
TATCAAAAGAGGTATAGCAT
Found at i:9629449 original size:129 final size:127
Alignment explanation
Indices: 9629200--9629455 Score: 395
Period size: 129 Copynumber: 2.0 Consensus size: 127
9629190 ATAATCCATA
*
9629200 GTCACTGCAATGGTGGGGGTTTTCGTGGACTACCTATGAGAGGGCACGGTAACCCAATTATATAT
1 GTCACTGCAATGGTGGGGGTTTCCGTGGACTACCTATGAGAGGGCACGGTAACCCAATTATATAT
*
9629265 TTACATCCAGGGGAGATGTTGGATGAAGTATCTCCTGAGGTAAGATTTGAATGCACCTCACG
66 TTACATCCAGGGGAGATGTTGGATGAAGTATCTCCTGAGCTAAGATTTGAATGCACCTCACG
* * * *
9629327 GTCACTGCAGTGGTGGGGGTTTCCGTGGACTGCCTATGAGAGGAGCACTGTAACTCAATTATATA
1 GTCACTGCAATGGTGGGGGTTTCCGTGGACTACCTATGAGAGG-GCACGGTAACCCAATTATATA
* * * * *
9629392 TTTACCTCCGGGGGGAGATGTTGGGTGAAGTATCTCCTGAGCTATGATTTGAGTGCACCTCACG
65 TTTACATCC-AGGGGAGATGTTGGATGAAGTATCTCCTGAGCTAAGATTTGAATGCACCTCACG
9629456 TTCGGGTCAC
Statistics
Matches: 116, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
127 40 0.34
128 27 0.23
129 49 0.42
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (127 bp):
GTCACTGCAATGGTGGGGGTTTCCGTGGACTACCTATGAGAGGGCACGGTAACCCAATTATATAT
TTACATCCAGGGGAGATGTTGGATGAAGTATCTCCTGAGCTAAGATTTGAATGCACCTCACG
Found at i:9631399 original size:33 final size:35
Alignment explanation
Indices: 9631342--9631410 Score: 88
Period size: 33 Copynumber: 2.0 Consensus size: 35
9631332 TTTTTTTTTC
9631342 TTCCTTCTTATTCCTTCTTATTTTTTTCT-TTCTT
1 TTCCTTCTTATTCCTTCTTATTTTTTTCTGTTCTT
* * * *
9631376 TTCC-TCTTTTTCTTTCTTTTTTTTTTTTGTTCTT
1 TTCCTTCTTATTCCTTCTTATTTTTTTCTGTTCTT
9631410 T
1 T
9631411 CTCTCCTTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
33 20 0.67
34 10 0.33
ACGTcount: A:0.03, C:0.20, G:0.01, T:0.75
Consensus pattern (35 bp):
TTCCTTCTTATTCCTTCTTATTTTTTTCTGTTCTT
Found at i:9640993 original size:22 final size:22
Alignment explanation
Indices: 9640968--9641012 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
9640958 AGGGTTTAGA
* *
9640968 AATTTGTCAATGGTTATAGCCT
1 AATTAGTCAATGATTATAGCCT
*
9640990 AATTAGTTAATGATTATAGCCT
1 AATTAGTCAATGATTATAGCCT
9641012 A
1 A
9641013 CAACCAAGGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.33, C:0.11, G:0.16, T:0.40
Consensus pattern (22 bp):
AATTAGTCAATGATTATAGCCT
Found at i:9645821 original size:22 final size:22
Alignment explanation
Indices: 9645796--9645837 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
9645786 TGGGATTAGA
9645796 AATTAGTCAATGGA-TATAGCCT
1 AATTAGTCAAT-GATTATAGCCT
9645818 AATTAGTCAATGATTATAGC
1 AATTAGTCAATGATTATAGC
9645838 GTACAATCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 2 0.11
22 17 0.89
ACGTcount: A:0.38, C:0.12, G:0.17, T:0.33
Consensus pattern (22 bp):
AATTAGTCAATGATTATAGCCT
Found at i:9657568 original size:18 final size:17
Alignment explanation
Indices: 9657550--9657583 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
9657540 TGAGTTCTTA
*
9657550 AAAAAATAATTTTTTTT
1 AAAAAACAATTTTTTTT
*
9657567 AAATAACAATTTTTTTT
1 AAAAAACAATTTTTTTT
9657584 TTGTAAAAGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (17 bp):
AAAAAACAATTTTTTTT
Found at i:9660507 original size:13 final size:13
Alignment explanation
Indices: 9660475--9660513 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
9660465 GGGGGCCGAC
*
9660475 AAGAA-AAGAGAA
1 AAGAAGAAGAAAA
9660487 AAGAAAGAAGAAAA
1 AAG-AAGAAGAAAA
9660501 AAGAAGAAGAAAA
1 AAGAAGAAGAAAA
9660514 TGGGGGGCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
12 3 0.12
13 12 0.50
14 9 0.38
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (13 bp):
AAGAAGAAGAAAA
Found at i:9660742 original size:20 final size:21
Alignment explanation
Indices: 9660717--9660756 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 21
9660707 AAGGAGAAAG
9660717 AGGAAGAAGAGAAAG-GAAGA
1 AGGAAGAAGAGAAAGAGAAGA
9660737 AGGAAGAAGAGAAAGAGAAG
1 AGGAAGAAGAGAAAGAGAAG
9660757 CGCTTGCTGG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.60, C:0.00, G:0.40, T:0.00
Consensus pattern (21 bp):
AGGAAGAAGAGAAAGAGAAGA
Found at i:9661499 original size:60 final size:60
Alignment explanation
Indices: 9661406--9661642 Score: 352
Period size: 60 Copynumber: 4.0 Consensus size: 60
9661396 TTGATTGTAA
*
9661406 AAAGGGGAACCTGAAGCCCCGATTTATATTTGGTGACGTGGGTAGTTCCCACGAGTAGGC
1 AAAGGGGGACCTGAAGCCCCGATTTATATTTGGTGACGTGGGTAGTTCCCACGAGTAGGC
* *
9661466 AAAGGGGGACCTGAAGCCTCGATTTATATTTGGTGACGTGGGTAGTTCCCACAAGTAGGC
1 AAAGGGGGACCTGAAGCCCCGATTTATATTTGGTGACGTGGGTAGTTCCCACGAGTAGGC
* * * * * *
9661526 AAAGGGGGACCTGAAGCCCCAATTTATATTTAGTGACATGGGTAATTCCCATGAGTAGGT
1 AAAGGGGGACCTGAAGCCCCGATTTATATTTGGTGACGTGGGTAGTTCCCACGAGTAGGC
* * *
9661586 AAAGGGGGACCTGAAACCCCGATTCATA--TGGTGGCGTGGGTAGTTCCCACGAGTAGG
1 AAAGGGGGACCTGAAGCCCCGATTTATATTTGGTGACGTGGGTAGTTCCCACGAGTAGG
9661643 TGATGATGTT
Statistics
Matches: 158, Mismatches: 19, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
58 24 0.15
60 134 0.85
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (60 bp):
AAAGGGGGACCTGAAGCCCCGATTTATATTTGGTGACGTGGGTAGTTCCCACGAGTAGGC
Found at i:9664346 original size:20 final size:20
Alignment explanation
Indices: 9664304--9664346 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
9664294 GACAGAGAGC
* *
9664304 TCTTAGTTGACTAACTTGCT
1 TCTTAGTCGACTAACTTGAT
* *
9664324 TCTTAGTCGATTAAGTTGAT
1 TCTTAGTCGACTAACTTGAT
9664344 TCT
1 TCT
9664347 GTCTTCTGAC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.21, C:0.16, G:0.16, T:0.47
Consensus pattern (20 bp):
TCTTAGTCGACTAACTTGAT
Found at i:9664527 original size:73 final size:72
Alignment explanation
Indices: 9664301--9664575 Score: 272
Period size: 73 Copynumber: 3.8 Consensus size: 72
9664291 GCAGACAGAG
* * * * * * *
9664301 AGCTCTTAGTTGACTAAC-TTGCTTCTTAGTCGATTAAGTTGATTCTGTCTTCTG-ACCCCAGTT
1 AGCTCTTAGTCGACTAACATT-CCTCTTAGTTGATTAAGTTGGTTCTGT-TTCTGAACTCGACTT
*** *
9664364 GCAAACAGTG
64 -CGGGCAGTA
* * * * * *
9664374 AGCTCTTAGTCGACTAACATACTTCTTAGTTGATTAAGTTGATT-TGTCTCTGAACCCGATTTCG
1 AGCTCTTAGTCGACTAACATTCCTCTTAGTTGATTAAGTTGGTTCTGTTTCTGAACTCGACTTCG
9664438 GGCAGTA
66 GGCAGTA
* *
9664445 AGCTCTTAGTCGACTAACGATTCCTCTTAGTTGATTAAGTCGGTTCTGTTTTTGAACTCGACTTC
1 AGCTCTTAGTCGACTAAC-ATTCCTCTTAGTTGATTAAGTTGGTTCTGTTTCTGAACTCGACTTC
*
9664510 TGGCAGTA
65 GGGCAGTA
9664518 AGCAT-TTAGTCGACTAACAATAT-CTCTTAGTTGATTAAGTTGGTTCTGTTTCTGAACT
1 AGC-TCTTAGTCGACTAAC-AT-TCCTCTTAGTTGATTAAGTTGGTTCTGTTTCTGAACT
9664576 GGCCATCTTC
Statistics
Matches: 174, Mismatches: 22, Indels: 12
0.84 0.11 0.06
Matches are distributed among these distances:
71 27 0.16
72 32 0.18
73 112 0.64
74 3 0.02
ACGTcount: A:0.23, C:0.20, G:0.19, T:0.38
Consensus pattern (72 bp):
AGCTCTTAGTCGACTAACATTCCTCTTAGTTGATTAAGTTGGTTCTGTTTCTGAACTCGACTTCG
GGCAGTA
Found at i:9670733 original size:1 final size:1
Alignment explanation
Indices: 9670729--9670777 Score: 98
Period size: 1 Copynumber: 49.0 Consensus size: 1
9670719 AGAGGGAGGA
9670729 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
9670778 AAAAAAGAAA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 48 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:9672866 original size:38 final size:39
Alignment explanation
Indices: 9672815--9672917 Score: 129
Period size: 38 Copynumber: 2.6 Consensus size: 39
9672805 ATAGTGCCCG
** * *
9672815 TGTGCACGATGTGGGGGGATTTATACGATAACAT-TGAC-
1 TGTGCACGATGTGGGGGGATGCACACGATAAC-TCCGACA
*
9672853 TGTGCACGATGTGGGGGGATGCACACGATGACTCCGACTA
1 TGTGCACGATGTGGGGGGATGCACACGATAACTCCGAC-A
9672893 TGTGCACGATGTGGGGGGATGCACA
1 TGTGCACGATGTGGGGGGATGCACA
9672918 TGAGCTGGGT
Statistics
Matches: 57, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
37 1 0.02
38 31 0.54
40 25 0.44
ACGTcount: A:0.23, C:0.17, G:0.36, T:0.23
Consensus pattern (39 bp):
TGTGCACGATGTGGGGGGATGCACACGATAACTCCGACA
Found at i:9674586 original size:20 final size:20
Alignment explanation
Indices: 9674557--9674596 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
9674547 CAAATCACTC
* *
9674557 ATCATACATTTAATCATCCT
1 ATCATACATTCAAACATCCT
*
9674577 ATCATGCATTCAAACATCCT
1 ATCATACATTCAAACATCCT
9674597 TTGATTTTGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.35, C:0.28, G:0.03, T:0.35
Consensus pattern (20 bp):
ATCATACATTCAAACATCCT
Found at i:9677420 original size:16 final size:16
Alignment explanation
Indices: 9677401--9677446 Score: 67
Period size: 16 Copynumber: 2.9 Consensus size: 16
9677391 GAAGGTATAA
9677401 AAAAAAGAAGAGAAAG
1 AAAAAAGAAGAGAAAG
9677417 AAAAAAGAAGA-AGAAG
1 AAAAAAGAAGAGA-AAG
*
9677433 AAAAAATAAGAGAA
1 AAAAAAGAAGAGAA
9677447 TGATGAGAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
15 1 0.04
16 25 0.93
17 1 0.04
ACGTcount: A:0.76, C:0.00, G:0.22, T:0.02
Consensus pattern (16 bp):
AAAAAAGAAGAGAAAG
Found at i:9677427 original size:19 final size:19
Alignment explanation
Indices: 9677399--9677435 Score: 58
Period size: 18 Copynumber: 1.9 Consensus size: 19
9677389 GTGAAGGTAT
9677399 AAAAAAAAGAAG-AGAAAG
1 AAAAAAAAGAAGAAGAAAG
9677417 AAAAAAGAAGAAGAAGAAA
1 AAAAAA-AAGAAGAAGAAA
9677436 AAATAAGAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
19 6 0.35
20 5 0.29
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (19 bp):
AAAAAAAAGAAGAAGAAAG
Found at i:9678250 original size:12 final size:13
Alignment explanation
Indices: 9678235--9678267 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
9678225 AAAAAAGAAG
9678235 AAAAAGAGAT-AA
1 AAAAAGAGATGAA
9678247 AAAAAG-GATGAA
1 AAAAAGAGATGAA
9678259 AAAAAGAGA
1 AAAAAGAGA
9678268 AAGAAAAATC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 3 0.16
12 14 0.74
13 2 0.11
ACGTcount: A:0.73, C:0.00, G:0.21, T:0.06
Consensus pattern (13 bp):
AAAAAGAGATGAA
Found at i:9678274 original size:12 final size:13
Alignment explanation
Indices: 9678232--9678275 Score: 51
Period size: 12 Copynumber: 3.6 Consensus size: 13
9678222 TGAAAAAAAG
9678232 AAGAAAAAGAGAT
1 AAGAAAAAGAGAT
9678245 AA-AAAAAG-GAT
1 AAGAAAAAGAGAT
9678256 GAA-AAAAAGAGA-
1 -AAGAAAAAGAGAT
9678268 AAGAAAAA
1 AAGAAAAA
9678276 TCAGCTTTAG
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
11 5 0.18
12 19 0.68
13 4 0.14
ACGTcount: A:0.75, C:0.00, G:0.20, T:0.05
Consensus pattern (13 bp):
AAGAAAAAGAGAT
Found at i:9679702 original size:61 final size:61
Alignment explanation
Indices: 9679604--9680824 Score: 1173
Period size: 61 Copynumber: 19.9 Consensus size: 61
9679594 GGATTTCAAT
* * * * * * *
9679604 CCAATCAAACTGGCATCCAAGATATATAAGTCTAGTTACGTTGGCATAAATGATTTTAAAC
1 CCAATCAAGCTGGCATCCAAGATGTATAAGTCCAGTTACGTTGGCACAAAAGAGTTTAAGC
* * * *
9679665 CCAATCAAGCTAGCATCCAAGATGTATAAGTTCAGTTACGTAGGCACAAAATGATTTTAAGC
1 CCAATCAAGCTGGCATCCAAGATGTATAAGTCCAGTTACGTTGGCACAAAA-GAGTTTAAGC
* * ** * *
9679727 CCAATCAAACTGGCATCCAAGATGTATAAGTCCAATTACGTTATCACAAATGAGCTTAAGC
1 CCAATCAAGCTGGCATCCAAGATGTATAAGTCCAGTTACGTTGGCACAAAAGAGTTTAAGC
* * * *
9679788 TCAATCAAGCTGGCATCCAAGATGTATAAGTCCAATTATGTTGGCACAAAAGAATTTAAGC
1 CCAATCAAGCTGGCATCCAAGATGTATAAGTCCAGTTACGTTGGCACAAAAGAGTTTAAGC
** * * * * *
9679849 CCAATTTATCTGGCATCTAAGATGTATAAGTCTAGTTACGTTGGCACAAATGAGCTTAAGC
1 CCAATCAAGCTGGCATCCAAGATGTATAAGTCCAGTTACGTTGGCACAAAAGAGTTTAAGC
* *
9679910 CCAATCAAACTGGCATCCAAGATGTATAAGACCAGTTACGTTGGCACAAAAAGAGTTTAAGC
1 CCAATCAAGCTGGCATCCAAGATGTATAAGTCCAGTTACGTTGGCAC-AAAAGAGTTTAAGC
** * ** *
9679972 CCAATTTACCTAACATCCAAGATGTATAAGTCCAGTTACATTGGCACAAAAAGAGTTTAAGC
1 CCAATCAAGCTGGCATCCAAGATGTATAAGTCCAGTTACGTTGGCAC-AAAAGAGTTTAAGC
* * * * * **
9680034 CTAATCAAACTGGCATCCAAGATGTTTAAGTCCAGTTATGTTGGCTCGAAAA-AGTTTAAAT
1 CCAATCAAGCTGGCATCCAAGATGTATAAGTCCAGTTACGTTGGCAC-AAAAGAGTTTAAGC
* * * * * *
9680095 CCAAT-TAGCCGACATCCAAGATGT-TAAGTCCAATTACGTTGCTGC-GAAAA-AGTTAAAGC
1 CCAATCAAGCTGGCATCCAAGATGTATAAGTCCAGTTACGTTG--GCACAAAAGAGTTTAAGC
* * * * * * * *
9680154 CTAATCAAACTGGCATCCAAGATGCATAAGTCCAATTACATTGGCATAAAAAAATTTAAGC
1 CCAATCAAGCTGGCATCCAAGATGTATAAGTCCAGTTACGTTGGCACAAAAGAGTTTAAGC
* * * * **
9680215 CCAAT-ATACCTGTCATCCAAGATATATAAGTCCAATTATATTGGCACAAAAAGAGTTTAAGC
1 CCAATCA-AGCTGGCATCCAAGATGTATAAGTCCAGTTACGTTGGCAC-AAAAGAGTTTAAGC
* * * * * ** *
9680277 CTAATCAAACTAGCATCCAAAATGTATAAGTCCAGTTATGTTGGCATGAAAGAATTTAAGC
1 CCAATCAAGCTGGCATCCAAGATGTATAAGTCCAGTTACGTTGGCACAAAAGAGTTTAAGC
** * * * * *
9680338 CCAATTTATCTGGCATCTAAGATGTATAAGTCTAGTTACGTTGGCACAAATGAGCTTAAGC
1 CCAATCAAGCTGGCATCCAAGATGTATAAGTCCAGTTACGTTGGCACAAAAGAGTTTAAGC
* * * *
9680399 CCAATCAAGTTGGCATCCAAGATGAATAA-TACTAGTTACGTTGGCATAAAAAGAGTTTAAGC
1 CCAATCAAGCTGGCATCCAAGATGTATAAGT-CCAGTTACGTTGGCA-CAAAAGAGTTTAAGC
* * * * * * * *
9680461 CTAATTTAA-CTAGCATCCAAGATATATAAGTCCAGTTATGTTGGCACGAAAGAATTTAAGA
1 CCAA-TCAAGCTGGCATCCAAGATGTATAAGTCCAGTTACGTTGGCACAAAAGAGTTTAAGC
** * * * * *
9680522 CCAATTTATCTGGCATCTAAGATGTATAAATCCAGTTACGTTGGCACAAATGAGCTTAAGC
1 CCAATCAAGCTGGCATCCAAGATGTATAAGTCCAGTTACGTTGGCACAAAAGAGTTTAAGC
* * * * *
9680583 CCAATCGAGTTGGCATCCAAGATGTAAAAGACTAGTTACGTTGGCACAAAAGTAGTTTAAGC
1 CCAATCAAGCTGGCATCCAAGATGTATAAGTCCAGTTACGTTGGCACAAAAG-AGTTTAAGC
** * * * * * *
9680645 CCAATTTAGCTGGTATCCAAGGTGTTTAAGTCCAGTTATGTTAGCATGAAAAGAGAGTTTAAGC
1 CCAATCAAGCTGGCATCCAAGATGTATAAGTCCAGTTACGTTGGCA--CAAA-AGAGTTTAAGC
* * * * *
9680709 CCAAT-TAGCTGGCATCCAAGATGTATAAGTCCAATTATGTTGGCACGAAAGAGTTTAAGT
1 CCAATCAAGCTGGCATCCAAGATGTATAAGTCCAGTTACGTTGGCACAAAAGAGTTTAAGC
* **
9680769 CCAATCAAGCTGGCATCCAAGATGTATAAGTCTAGTTACAATGGCACAAAAAGAGT
1 CCAATCAAGCTGGCATCCAAGATGTATAAGTCCAGTTACGTTGGCAC-AAAAGAGT
9680825 CTGGCATCCA
Statistics
Matches: 946, Mismatches: 192, Indels: 43
0.80 0.16 0.04
Matches are distributed among these distances:
59 31 0.03
60 53 0.06
61 501 0.53
62 302 0.32
63 40 0.04
64 17 0.02
65 2 0.00
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.27
Consensus pattern (61 bp):
CCAATCAAGCTGGCATCCAAGATGTATAAGTCCAGTTACGTTGGCACAAAAGAGTTTAAGC
Found at i:9679834 original size:123 final size:121
Alignment explanation
Indices: 9679611--9680824 Score: 1179
Period size: 123 Copynumber: 9.9 Consensus size: 121
9679601 AATCCAATCA
* * * * *
9679611 AACTGGCATCCAAGATATATAAGTCTAGTTACGTTGGCATAAATGATTTTAAACCCAATCAAGCT
1 AACTGGCATCCAAGATGTATAAGTCCAGTTACGTTGGCACAAATGAGTTT-AAGCCAATCAAGCT
* * * * **
9679676 AGCATCCAAGATGTATAAGTTCAGTTACGTAGGCACAAAATGATTTTAAGCCCAATCA
65 GGCATCCAAGATGTATAAGTCCAGTTACGTTGGCACAAAA-GAGTTTAAGCCCAATTT
* ** *
9679734 AACTGGCATCCAAGATGTATAAGTCCAATTACGTTATCACAAATGAGCTTAAGCTCAATCAAGCT
1 AACTGGCATCCAAGATGTATAAGTCCAGTTACGTTGGCACAAATGAGTTTAAGC-CAATCAAGCT
* * *
9679799 GGCATCCAAGATGTATAAGTCCAATTATGTTGGCACAAAAGAATTTAAGCCCAATTT
65 GGCATCCAAGATGTATAAGTCCAGTTACGTTGGCACAAAAGAGTTTAAGCCCAATTT
* * * * *
9679856 ATCTGGCATCTAAGATGTATAAGTCTAGTTACGTTGGCACAAATGAGCTTAAGCCCAATCAAACT
1 AACTGGCATCCAAGATGTATAAGTCCAGTTACGTTGGCACAAATGAGTTTAAG-CCAATCAAGCT
*
9679921 GGCATCCAAGATGTATAAGACCAGTTACGTTGGCACAAAAAGAGTTTAAGCCCAATTT
65 GGCATCCAAGATGTATAAGTCCAGTTACGTTGGCAC-AAAAGAGTTTAAGCCCAATTT
* ** * * *
9679979 ACCTAACATCCAAGATGTATAAGTCCAGTTACATTGGCACAAAAAGAGTTTAAGCCTAATCAAAC
1 AACTGGCATCCAAGATGTATAAGTCCAGTTACGTTGGCAC-AAATGAGTTTAAGCC-AATCAAGC
* * * **
9680044 TGGCATCCAAGATGTTTAAGTCCAGTTATGTTGGCTCGAAAA-AGTTTAAATCCAA-TT
64 TGGCATCCAAGATGTATAAGTCCAGTTACGTTGGCAC-AAAAGAGTTTAAGCCCAATTT
* * * * *
9680101 AGCCGACATCCAAGATGT-TAAGTCCAATTACGTTGCTGCGA-AAA--AGTTAAAGCCTAATCAA
1 AACTGGCATCCAAGATGTATAAGTCCAGTTACGTTG--GC-ACAAATGAGTTTAAGCC-AATCAA
* * * * * * * *
9680162 ACTGGCATCCAAGATGCATAAGTCCAATTACATTGGCATAAAAAAATTTAAGCCCAATAT
62 GCTGGCATCCAAGATGTATAAGTCCAGTTACGTTGGCACAAAAGAGTTTAAGCCCAATTT
* * * * ** * *
9680222 ACCTGTCATCCAAGATATATAAGTCCAATTATATTGGCACAAAAAGAGTTTAAGCCTAATCAAAC
1 AACTGGCATCCAAGATGTATAAGTCCAGTTACGTTGGCAC-AAATGAGTTTAAGCC-AATCAAGC
* * * ** *
9680287 TAGCATCCAAAATGTATAAGTCCAGTTATGTTGGCATGAAAGAATTTAAGCCCAATTT
64 TGGCATCCAAGATGTATAAGTCCAGTTACGTTGGCACAAAAGAGTTTAAGCCCAATTT
* * * * *
9680345 ATCTGGCATCTAAGATGTATAAGTCTAGTTACGTTGGCACAAATGAGCTTAAGCCCAATCAAGTT
1 AACTGGCATCCAAGATGTATAAGTCCAGTTACGTTGGCACAAATGAGTTTAAG-CCAATCAAGCT
* * * *
9680410 GGCATCCAAGATGAATAA-TACTAGTTACGTTGGCATAAAAAGAGTTTAAGCCTAATTT
65 GGCATCCAAGATGTATAAGT-CCAGTTACGTTGGCA-CAAAAGAGTTTAAGCCCAATTT
* * * * ** *
9680468 AACTAGCATCCAAGATATATAAGTCCAGTTATGTTGGCACGAAA-GAATTTAAGACCAATTTATC
1 AACTGGCATCCAAGATGTATAAGTCCAGTTACGTTGGCAC-AAATGAGTTTAAG-CCAATCAAGC
* * * * **
9680532 TGGCATCTAAGATGTATAAATCCAGTTACGTTGGCACAAATGAGCTTAAGCCCAATCG
64 TGGCATCCAAGATGTATAAGTCCAGTTACGTTGGCACAAAAGAGTTTAAGCCCAATTT
** * * * * **
9680590 AGTTGGCATCCAAGATGTAAAAGACTAGTTACGTTGGCACAAAAGTAGTTTAAGCCCAATTTAGC
1 AACTGGCATCCAAGATGTATAAGTCCAGTTACGTTGGCACAAATG-AGTTTAAG-CCAATCAAGC
* * * * * *
9680655 TGGTATCCAAGGTGTTTAAGTCCAGTTATGTTAGCATGAAAAGAGAGTTTAAGCCCAA-TT
64 TGGCATCCAAGATGTATAAGTCCAGTTACGTTGGCA--CAAA-AGAGTTTAAGCCCAATTT
* * *
9680715 AGCTGGCATCCAAGATGTATAAGTCCAATTATGTTGGCACGAAA-GAGTTTAAGTCCAATCAAGC
1 AACTGGCATCCAAGATGTATAAGTCCAGTTACGTTGGCAC-AAATGAGTTTAAG-CCAATCAAGC
* **
9680779 TGGCATCCAAGATGTATAAGTCTAGTTACAATGGCACAAAAAGAGT
64 TGGCATCCAAGATGTATAAGTCCAGTTACGTTGGCAC-AAAAGAGT
9680825 CTGGCATCCA
Statistics
Matches: 904, Mismatches: 160, Indels: 55
0.81 0.14 0.05
Matches are distributed among these distances:
119 5 0.01
120 60 0.07
121 37 0.04
122 241 0.27
123 402 0.44
124 105 0.12
125 38 0.04
126 16 0.02
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.27
Consensus pattern (121 bp):
AACTGGCATCCAAGATGTATAAGTCCAGTTACGTTGGCACAAATGAGTTTAAGCCAATCAAGCTG
GCATCCAAGATGTATAAGTCCAGTTACGTTGGCACAAAAGAGTTTAAGCCCAATTT
Found at i:9679991 original size:184 final size:183
Alignment explanation
Indices: 9679613--9680824 Score: 1195
Period size: 184 Copynumber: 6.6 Consensus size: 183
9679603 TCCAATCAAA
* * * * * * * *
9679613 CTGGCATCCAAGATATATAAGTCTAGTTACGTTGGCATAAATGATTTTAAACCCAATCAAGCTAG
1 CTGGCATCCAAGATGTATAAGTCCAGTTACGTTGGCACAAAAGAGTTTAAGCCCAATCAATCTGG
* *
9679678 CATCCAAGATGTATAAGT-TCAGTTACGTAGGCACAAAATGATTTTAAGCCCAATCAAACTGGCA
66 CATCCAAGATGTATAAGTCT-AGTTACGTTGGCACAAAA-GAGTTTAAGCCCAATCAAACTGGCA
* ** * * * **
9679742 TCCAAGATGTATAAGTCCAATTACGTTATCACAAATGAGCTTAAGCTCAATCAAG
129 TCCAAGATGTATAAGTCCAGTTACGTTGGCACAAAAGAGTTTAAGCCCAATTTAG
* * * **
9679797 CTGGCATCCAAGATGTATAAGTCCAATTATGTTGGCACAAAAGAATTTAAGCCCAATTTATCTGG
1 CTGGCATCCAAGATGTATAAGTCCAGTTACGTTGGCACAAAAGAGTTTAAGCCCAATCAATCTGG
* * *
9679862 CATCTAAGATGTATAAGTCTAGTTACGTTGGCACAAATGAGCTTAAGCCCAATCAAACTGGCATC
66 CATCCAAGATGTATAAGTCTAGTTACGTTGGCACAAAAGAGTTTAAGCCCAATCAAACTGGCATC
* *
9679927 CAAGATGTATAAGACCAGTTACGTTGGCACAAAAAGAGTTTAAGCCCAATTTAC
131 CAAGATGTATAAGTCCAGTTACGTTGGCAC-AAAAGAGTTTAAGCCCAATTTAG
** * * *
9679981 CTAACATCCAAGATGTATAAGTCCAGTTACATTGGCACAAAAAGAGTTTAAGCCTAATCAAACTG
1 CTGGCATCCAAGATGTATAAGTCCAGTTACGTTGGCAC-AAAAGAGTTTAAGCCCAATCAATCTG
* * * * ** * * * *
9680046 GCATCCAAGATGTTTAAGTCCAGTTATGTTGGCTCGAAAA-AGTTTAAATCCAAT-TAGCCGACA
65 GCATCCAAGATGTATAAGTCTAGTTACGTTGGCAC-AAAAGAGTTTAAGCCCAATCAAACTGGCA
* * * * ** *
9680109 TCCAAGATGT-TAAGTCCAATTACGTTGCTGC-GAAAA-AGTTAAAGCCTAATCAAA
129 TCCAAGATGTATAAGTCCAGTTACGTTG--GCACAAAAGAGTTTAAGCCCAATTTAG
* * * * * * *
9680163 CTGGCATCCAAGATGCATAAGTCCAATTACATTGGCATAAAAAAATTTAAGCCCAAT-ATACCTG
1 CTGGCATCCAAGATGTATAAGTCCAGTTACGTTGGCACAAAAGAGTTTAAGCCCAATCA-ATCTG
* * * * ** * *
9680227 TCATCCAAGATATATAAGTCCAATTATATTGGCACAAAAAGAGTTTAAGCCTAATCAAACTAGCA
65 GCATCCAAGATGTATAAGTCTAGTTACGTTGGCAC-AAAAGAGTTTAAGCCCAATCAAACTGGCA
* * ** * *
9680292 TCCAAAATGTATAAGTCCAGTTATGTTGGCATGAAAGAATTTAAGCCCAATTTAT
129 TCCAAGATGTATAAGTCCAGTTACGTTGGCACAAAAGAGTTTAAGCCCAATTTAG
* * * *
9680347 CTGGCATCTAAGATGTATAAGTCTAGTTACGTTGGCACAAATGAGCTTAAGCCCAATCAAGT-TG
1 CTGGCATCCAAGATGTATAAGTCCAGTTACGTTGGCACAAAAGAGTTTAAGCCCAATCAA-TCTG
* * * ** *
9680411 GCATCCAAGATGAATAA-TACTAGTTACGTTGGCATAAAAAGAGTTTAAGCCTAATTTAACTAGC
65 GCATCCAAGATGTATAAGT-CTAGTTACGTTGGCA-CAAAAGAGTTTAAGCCCAATCAAACTGGC
* * * * * *
9680475 ATCCAAGATATATAAGTCCAGTTATGTTGGCACGAAAGAATTTAAGACCAATTTAT
128 ATCCAAGATGTATAAGTCCAGTTACGTTGGCACAAAAGAGTTTAAGCCCAATTTAG
* * * * *
9680531 CTGGCATCTAAGATGTATAAATCCAGTTACGTTGGCACAAATGAGCTTAAGCCCAATCGAGT-TG
1 CTGGCATCCAAGATGTATAAGTCCAGTTACGTTGGCACAAAAGAGTTTAAGCCCAATC-AATCTG
* * ** * *
9680595 GCATCCAAGATGTAAAAGACTAGTTACGTTGGCACAAAAGTAGTTTAAGCCCAATTTAGCTGGTA
65 GCATCCAAGATGTATAAGTCTAGTTACGTTGGCACAAAAG-AGTTTAAGCCCAATCAAACTGGCA
* * * * *
9680660 TCCAAGGTGTTTAAGTCCAGTTATGTTAGCATGAAAAGAGAGTTTAAGCCCAA-TTAG
129 TCCAAGATGTATAAGTCCAGTTACGTTGGCA--CAAA-AGAGTTTAAGCCCAATTTAG
* * * * *
9680717 CTGGCATCCAAGATGTATAAGTCCAATTATGTTGGCACGAAAGAGTTTAAGTCCAATCAAGCTGG
1 CTGGCATCCAAGATGTATAAGTCCAGTTACGTTGGCACAAAAGAGTTTAAGCCCAATCAATCTGG
**
9680782 CATCCAAGATGTATAAGTCTAGTTACAATGGCACAAAAAGAGT
66 CATCCAAGATGTATAAGTCTAGTTACGTTGGCAC-AAAAGAGT
9680825 CTGGCATCCA
Statistics
Matches: 852, Mismatches: 152, Indels: 46
0.81 0.14 0.04
Matches are distributed among these distances:
180 1 0.00
181 53 0.06
182 59 0.07
183 92 0.11
184 467 0.55
185 68 0.08
186 94 0.11
187 18 0.02
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.27
Consensus pattern (183 bp):
CTGGCATCCAAGATGTATAAGTCCAGTTACGTTGGCACAAAAGAGTTTAAGCCCAATCAATCTGG
CATCCAAGATGTATAAGTCTAGTTACGTTGGCACAAAAGAGTTTAAGCCCAATCAAACTGGCATC
CAAGATGTATAAGTCCAGTTACGTTGGCACAAAAGAGTTTAAGCCCAATTTAG
Found at i:9680143 original size:59 final size:61
Alignment explanation
Indices: 9679906--9680321 Score: 226
Period size: 62 Copynumber: 6.8 Consensus size: 61
9679896 AAATGAGCTT
* * * * * * * *
9679906 AAGCCCAATCAAACTGGCATCCAAGATG-TATAAGACCAGTTACGTTGGCACAAAAAGAGTTT
1 AAGCCTAATCAAACCGACATCCAAGATGCT-TAAGTCCAATTACGTTGGCTCGAAAA-AGTTA
* ** * * * * * *
9679968 AAGCCCAAT-TTACCTAACATCCAAGATG-TATAAGTCCAGTTACATTGGCACAAAAAGAGTTT
1 AAGCCTAATCAAACC-GACATCCAAGATGCT-TAAGTCCAATTACGTTGGCTCGAAAA-AGTTA
* * * * *
9680030 AAGCCTAATCAAACTGGCATCCAAGATGTTTAAGTCCAGTTATGTTGGCTCGAAAAAGTTTA
1 AAGCCTAATCAAACCGACATCCAAGATGCTTAAGTCCAATTACGTTGGCTCGAAAAAG-TTA
* * *
9680092 AATCC-AAT-TAGCCGACATCCAAGATG-TTAAGTCCAATTACGTT-GCTGCGAAAAAGTTA
1 AAGCCTAATCAAACCGACATCCAAGATGCTTAAGTCCAATTACGTTGGCT-CGAAAAAGTTA
* * * * * * *
9680150 AAGCCTAATCAAACTGGCATCCAAGATGCATAAGTCCAATTACATTGGCAT-AAAAAAATTT
1 AAGCCTAATCAAACCGACATCCAAGATGCTTAAGTCCAATTACGTTGGC-TCGAAAAAGTTA
* * * * ** * * *
9680211 AAGCCCAAT-ATACCTGTCATCCAAGAT-ATATAAGTCCAATTATATTGGCACAAAAAGAGTTT
1 AAGCCTAATCAAACC-GACATCCAAGATGCT-TAAGTCCAATTACGTTGGCTCGAAAA-AGTTA
* * * *
9680273 AAGCCTAATCAAA-CTAGCATCCAAAATG-TATAAGTCCAGTTATGTTGGC
1 AAGCCTAATCAAACCGA-CATCCAAGATGCT-TAAGTCCAATTACGTTGGC
9680322 ATGAAAGAAT
Statistics
Matches: 286, Mismatches: 51, Indels: 34
0.77 0.14 0.09
Matches are distributed among these distances:
58 10 0.03
59 26 0.09
60 31 0.11
61 71 0.25
62 142 0.50
63 6 0.02
ACGTcount: A:0.38, C:0.20, G:0.16, T:0.26
Consensus pattern (61 bp):
AAGCCTAATCAAACCGACATCCAAGATGCTTAAGTCCAATTACGTTGGCTCGAAAAAGTTA
Found at i:9680743 original size:30 final size:30
Alignment explanation
Indices: 9680704--9680800 Score: 108
Period size: 30 Copynumber: 3.2 Consensus size: 30
9680694 AAAGAGAGTT
*
9680704 TAAGCCCAATTAGCTGGCATCCAAGATGTA
1 TAAGTCCAATTAGCTGGCATCCAAGATGTA
* * *
9680734 TAAGTCCAATTATGTTGGCA-CGAAAGA-GTT
1 TAAGTCCAATTA-GCTGGCATC-CAAGATGTA
*
9680764 TAAGTCCAATCAAGCTGGCATCCAAGATGTA
1 TAAGTCCAAT-TAGCTGGCATCCAAGATGTA
9680795 TAAGTC
1 TAAGTC
9680801 TAGTTACAAT
Statistics
Matches: 54, Mismatches: 8, Indels: 9
0.76 0.11 0.13
Matches are distributed among these distances:
30 34 0.63
31 20 0.37
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.26
Consensus pattern (30 bp):
TAAGTCCAATTAGCTGGCATCCAAGATGTA
Done.