Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19593398
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 1222752 characters in sequence are not A, C, G, or T
File 32 of 50
Found at i:14462830 original size:17 final size:19
Alignment explanation
Indices: 14462808--14462850 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
14462798 ATATCAGAGG
14462808 AATTAG-TG-AATACACAA
1 AATTAGATGCAATACACAA
*
14462825 AATTAGATGCTATACACAA
1 AATTAGATGCAATACACAA
14462844 AATTAGA
1 AATTAGA
14462851 GTGCTTTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 6 0.26
18 2 0.09
19 15 0.65
ACGTcount: A:0.51, C:0.12, G:0.12, T:0.26
Consensus pattern (19 bp):
AATTAGATGCAATACACAA
Found at i:14462841 original size:19 final size:20
Alignment explanation
Indices: 14462817--14462855 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
14462807 GAATTAGTGA
14462817 ATACACAAAATTAGA-TGCT
1 ATACACAAAATTAGAGTGCT
14462836 ATACACAAAATTAGAGTGCT
1 ATACACAAAATTAGAGTGCT
14462856 TTTACGGAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 15 0.79
20 4 0.21
ACGTcount: A:0.46, C:0.15, G:0.13, T:0.26
Consensus pattern (20 bp):
ATACACAAAATTAGAGTGCT
Found at i:14464162 original size:16 final size:16
Alignment explanation
Indices: 14464141--14464171 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
14464131 AATTTATTCT
14464141 TTTCTTTTCTTTCTTC
1 TTTCTTTTCTTTCTTC
*
14464157 TTTCTTTTTTTTCTT
1 TTTCTTTTCTTTCTT
14464172 TCTCTTTCTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (16 bp):
TTTCTTTTCTTTCTTC
Found at i:14464170 original size:20 final size:20
Alignment explanation
Indices: 14464137--14464180 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
14464127 ACAAAATTTA
14464137 TTCTTTTCTTTTCTTTCTTCT
1 TTCTTTTCTTTTCTTTC-TCT
14464158 TTCTTTT-TTTTCTTTCTCT
1 TTCTTTTCTTTTCTTTCTCT
14464177 TTCT
1 TTCT
14464181 CTCACCCTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 7 0.30
20 9 0.39
21 7 0.30
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (20 bp):
TTCTTTTCTTTTCTTTCTCT
Found at i:14470088 original size:20 final size:21
Alignment explanation
Indices: 14470048--14470092 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
14470038 GAAAAAATGC
*
14470048 ACAAATGAATAAGAGTTTCATT
1 ACAAATGAATAAGAATTTCA-T
14470070 ACAAATG-ATAA-AATTTCAT
1 ACAAATGAATAAGAATTTCAT
14470089 ACAA
1 ACAA
14470093 CAAAAATCAC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 5 0.23
20 6 0.27
21 4 0.18
22 7 0.32
ACGTcount: A:0.51, C:0.11, G:0.09, T:0.29
Consensus pattern (21 bp):
ACAAATGAATAAGAATTTCAT
Found at i:14478203 original size:29 final size:30
Alignment explanation
Indices: 14478147--14478204 Score: 82
Period size: 29 Copynumber: 1.9 Consensus size: 30
14478137 AAAGATTTGC
*
14478147 AATAAGATATTTATAATATCCACAGTAGCTA
1 AATAAGATA-TTACAATATCCACAGTAGCTA
*
14478178 AATAAGATA-TACAATATCCACGGTAGC
1 AATAAGATATTACAATATCCACAGTAGC
14478205 CAAGCAAGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 16 0.64
31 9 0.36
ACGTcount: A:0.45, C:0.16, G:0.12, T:0.28
Consensus pattern (30 bp):
AATAAGATATTACAATATCCACAGTAGCTA
Found at i:14478213 original size:29 final size:29
Alignment explanation
Indices: 14478161--14478217 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
14478151 AGATATTTAT
* *
14478161 AATATCCACAGTAGCTAAATAAGATATAC
1 AATATCCACAGTAGCCAAACAAGATATAC
* *
14478190 AATATCCACGGTAGCCAAGCAAGATATA
1 AATATCCACAGTAGCCAAACAAGATATA
14478218 TTGAATATCC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.46, C:0.19, G:0.14, T:0.21
Consensus pattern (29 bp):
AATATCCACAGTAGCCAAACAAGATATAC
Found at i:14481327 original size:13 final size:13
Alignment explanation
Indices: 14481309--14481333 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14481299 TTTCAGAAAA
14481309 TTTATAAAATCAT
1 TTTATAAAATCAT
14481322 TTTATAAAATCA
1 TTTATAAAATCA
14481334 CAATTTCTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTTATAAAATCAT
Found at i:14482516 original size:28 final size:27
Alignment explanation
Indices: 14482477--14482529 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
14482467 AATGCTCTGG
*
14482477 GGGTGCAAAATTACCGTTTTGCCCCTA
1 GGGTGCAAAATTACAGTTTTGCCCCTA
*
14482504 GGGTGGCAAAATTACATTTTTGCCCC
1 GGGT-GCAAAATTACAGTTTTGCCCC
14482530 AAAAACTGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 4 0.17
28 19 0.83
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.30
Consensus pattern (27 bp):
GGGTGCAAAATTACAGTTTTGCCCCTA
Found at i:14482734 original size:19 final size:19
Alignment explanation
Indices: 14482710--14482747 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
14482700 CTGCCAAACC
*
14482710 CTCAAATTATACTCCAATA
1 CTCAAATCATACTCCAATA
*
14482729 CTCAAATCATACTCGAATA
1 CTCAAATCATACTCCAATA
14482748 AGTTAAATGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.42, C:0.26, G:0.03, T:0.29
Consensus pattern (19 bp):
CTCAAATCATACTCCAATA
Found at i:14485414 original size:18 final size:18
Alignment explanation
Indices: 14485391--14485439 Score: 55
Period size: 19 Copynumber: 2.7 Consensus size: 18
14485381 TGTGATTATT
*
14485391 ATATATATTAATATTTATAA
1 ATATAT-TTAAAATTTA-AA
14485411 ATATATTTAAAATTTAAA
1 ATATATTTAAAATTTAAA
*
14485429 AT-TAATTAAAA
1 ATATATTTAAAA
14485440 AATATGTTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 8 0.30
18 4 0.15
19 9 0.33
20 6 0.22
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
ATATATTTAAAATTTAAA
Found at i:14489359 original size:97 final size:98
Alignment explanation
Indices: 14489181--14489377 Score: 315
Period size: 97 Copynumber: 2.0 Consensus size: 98
14489171 GTTTTGTGGA
* *
14489181 AGCTGTTTGGCTAGTGCAAATGTCAAAGGACCATGTAGTTCAGATGGATATCCAAGTTTCTTGAT
1 AGCTGTTTGACTAGTACAAATGTCAAAGGACCATGTAGTTCAGATGGATATCCAAGTTTCTTGAT
*
14489246 TTAACATGTTATAATCTCCTGATGTTGTATAGC
66 TTAACAAGTTATAATCTCCTGATGTTGTATAGC
** * **
14489279 AGCTGTTTGACTAGTACAAATGTCAAATTACCATGTAG-TCAGGTGGATATCTGAGTTTCTTGAT
1 AGCTGTTTGACTAGTACAAATGTCAAAGGACCATGTAGTTCAGATGGATATCCAAGTTTCTTGAT
14489343 TTAACAAGTTATAATCTCCTGATGTTGTATAGC
66 TTAACAAGTTATAATCTCCTGATGTTGTATAGC
14489376 AG
1 AG
14489378 GATGTACTAT
Statistics
Matches: 91, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
97 57 0.63
98 34 0.37
ACGTcount: A:0.28, C:0.15, G:0.21, T:0.36
Consensus pattern (98 bp):
AGCTGTTTGACTAGTACAAATGTCAAAGGACCATGTAGTTCAGATGGATATCCAAGTTTCTTGAT
TTAACAAGTTATAATCTCCTGATGTTGTATAGC
Found at i:14493693 original size:33 final size:33
Alignment explanation
Indices: 14493654--14493719 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
14493644 ATAACATTTA
*
14493654 AGAGTCAAATAAAAACTCATTTCCTCTTGCAAT
1 AGAGTCAAATAAAAACGCATTTCCTCTTGCAAT
14493687 AGAGTCAAATAAAAACGCATTTCCTCTTGCAAT
1 AGAGTCAAATAAAAACGCATTTCCTCTTGCAAT
14493720 TTCTTACATA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.39, C:0.21, G:0.11, T:0.29
Consensus pattern (33 bp):
AGAGTCAAATAAAAACGCATTTCCTCTTGCAAT
Found at i:14500073 original size:2 final size:2
Alignment explanation
Indices: 14500066--14500090 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
14500056 AAGTCCCTAC
14500066 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
14500091 ATCAATATCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:14515499 original size:29 final size:28
Alignment explanation
Indices: 14515452--14515520 Score: 70
Period size: 28 Copynumber: 2.5 Consensus size: 28
14515442 CTTAAATATA
* *
14515452 TTTTTAATGTAAT-ATATAT-TATTTACAT
1 TTTTTAATATAATCTTATATGT-TTT-CAT
* *
14515480 TTTTTATTATAATCTTATATGTTTTTAT
1 TTTTTAATATAATCTTATATGTTTTCAT
14515508 TTTTTAATATAAT
1 TTTTTAATATAAT
14515521 TTCCTATATT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
28 25 0.74
29 8 0.24
30 1 0.03
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (28 bp):
TTTTTAATATAATCTTATATGTTTTCAT
Found at i:14516857 original size:16 final size:16
Alignment explanation
Indices: 14516831--14516863 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
14516821 TATTTTGTGT
14516831 TAACATTAAAAAAATTA
1 TAACATT-AAAAAATTA
14516848 TAAC-TTAAAAAATTA
1 TAACATTAAAAAATTA
14516863 T
1 T
14516864 TAATTACAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 10 0.62
16 2 0.12
17 4 0.25
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.33
Consensus pattern (16 bp):
TAACATTAAAAAATTA
Found at i:14517163 original size:21 final size:21
Alignment explanation
Indices: 14517133--14517172 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
14517123 ATATATATAT
*
14517133 ATATATATATATGTACTTTAA
1 ATATAAATATATGTACTTTAA
*
14517154 ATATAAATATATTTACTTT
1 ATATAAATATATGTACTTT
14517173 TTATTTTGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.42, C:0.05, G:0.03, T:0.50
Consensus pattern (21 bp):
ATATAAATATATGTACTTTAA
Found at i:14526003 original size:2 final size:2
Alignment explanation
Indices: 14525996--14526039 Score: 81
Period size: 2 Copynumber: 22.5 Consensus size: 2
14525986 TTTTGGAGCT
14525996 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
14526037 TA T
1 TA T
14526040 GCTTATTTGG
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.02
2 40 0.98
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:14527868 original size:46 final size:47
Alignment explanation
Indices: 14527780--14527877 Score: 128
Period size: 47 Copynumber: 2.1 Consensus size: 47
14527770 AATATTTATA
***
14527780 TTTTACTTTCATTTTTTTCAAAAAAAATCTCTTTTTGTTTTTTATTT
1 TTTTACTTTCATTTTTTTCAAAAAAAATCTCTTTTCCATTTTTATTT
* *
14527827 TTTTATTTTGATTTTTTTCAAAAAAGAAT-TC-TTTCCATTTTTATTT
1 TTTTACTTTCATTTTTTTCAAAAAA-AATCTCTTTTCCATTTTTATTT
14527873 TTTTA
1 TTTTA
14527878 GGATTTTTTC
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
46 17 0.38
47 25 0.56
48 3 0.07
ACGTcount: A:0.24, C:0.09, G:0.03, T:0.63
Consensus pattern (47 bp):
TTTTACTTTCATTTTTTTCAAAAAAAATCTCTTTTCCATTTTTATTT
Found at i:14528365 original size:33 final size:33
Alignment explanation
Indices: 14528318--14528381 Score: 101
Period size: 33 Copynumber: 1.9 Consensus size: 33
14528308 AATTTGTATT
*
14528318 ATAATAAATAAAAATAAAATATATGAAATTATA
1 ATAAGAAATAAAAATAAAATATATGAAATTATA
* *
14528351 ATAAGAAATAAAAATTAAATATATGAGATTA
1 ATAAGAAATAAAAATAAAATATATGAAATTA
14528382 AAAATTAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.30
Consensus pattern (33 bp):
ATAAGAAATAAAAATAAAATATATGAAATTATA
Found at i:14528398 original size:20 final size:21
Alignment explanation
Indices: 14528343--14528399 Score: 57
Period size: 20 Copynumber: 2.9 Consensus size: 21
14528333 AAAATATATG
* *
14528343 AAATTATA-ATAAGA-AATAA
1 AAATTAAATATAAGAGATTAA
*
14528362 AAATTAAATATATGAGATTAA
1 AAATTAAATATAAGAGATTAA
*
14528383 AAATT-AATTTAAGAGAT
1 AAATTAAATATAAGAGAT
14528400 AATATCAAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
19 7 0.23
20 15 0.48
21 9 0.29
ACGTcount: A:0.60, C:0.00, G:0.09, T:0.32
Consensus pattern (21 bp):
AAATTAAATATAAGAGATTAA
Found at i:14528617 original size:15 final size:16
Alignment explanation
Indices: 14528599--14528639 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 16
14528589 ATCTTCTCAG
14528599 TAATCATATTCTT-TA
1 TAATCATATTCTTCTA
*
14528614 TAATCACATT-TTCTA
1 TAATCATATTCTTCTA
*
14528629 CAATCATATTC
1 TAATCATATTC
14528640 CCTGCAATGT
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
14 2 0.10
15 19 0.90
ACGTcount: A:0.34, C:0.20, G:0.00, T:0.46
Consensus pattern (16 bp):
TAATCATATTCTTCTA
Found at i:14529767 original size:27 final size:28
Alignment explanation
Indices: 14529717--14529782 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 28
14529707 AAAATAAAAA
*
14529717 AATATATTAAATATTAATTCTAAATTATT
1 AATATTTTAAATA-TAATTCTAAATTATT
* * *
14529746 AATGTTTTAAATA-AATTGTAAATTTTT
1 AATATTTTAAATATAATTCTAAATTATT
14529773 AATATTTTAA
1 AATATTTTAA
14529783 TAGTTTTTAA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 21 0.66
29 11 0.34
ACGTcount: A:0.45, C:0.02, G:0.03, T:0.50
Consensus pattern (28 bp):
AATATTTTAAATATAATTCTAAATTATT
Found at i:14529884 original size:34 final size:33
Alignment explanation
Indices: 14529846--14529909 Score: 78
Period size: 35 Copynumber: 1.9 Consensus size: 33
14529836 TTAAAGTTTT
14529846 AATTA-TAA-ATTATTAATATTTTGAATAAACTATA
1 AATTATTAATATT-TTAATATTTT-AA-AAACTATA
*
14529880 AATTATTAATATTTTACTATTTTAAAAACT
1 AATTATTAATATTTTAATATTTTAAAAACT
14529910 GAAAATAAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
33 5 0.19
34 7 0.26
35 12 0.44
36 3 0.11
ACGTcount: A:0.47, C:0.05, G:0.02, T:0.47
Consensus pattern (33 bp):
AATTATTAATATTTTAATATTTTAAAAACTATA
Found at i:14529962 original size:114 final size:113
Alignment explanation
Indices: 14529713--14530007 Score: 299
Period size: 114 Copynumber: 2.6 Consensus size: 113
14529703 AATTAAAATA
* * * *
14529713 AAAAAAT-ATATTAAA--TATTAATTCTAAATTATTAATGTTTTAAATAAATTGTAAATTTTTAA
1 AAAAAATCATATTAAAGTTATTAATTATAAATTATTAATATTTT-AATAAATTATAAATTATTAA
* *
14529775 TATTTTAATAGTTTTTAAAAATGAAATTAGAGATAGAATAAAATAAAAAC
65 TATTTTAATAG-TTTTAAAAATGAAAATAAAGATAGAATAAAATAAAAAC
*
14529825 AAAAAATCATATTAAAGTT-TTAATTATAAATTATTAATATTTTGAATAAACTATAAATTATTAA
1 AAAAAATCATATTAAAGTTATTAATTATAAATTATTAATATTTT-AATAAATTATAAATTATTAA
* **
14529889 TATTTTACTA-TTTTAAAAACTGAAAATAAAGA-A-AA-AAAATTAAAATT
65 TATTTTAATAGTTTTAAAAA-TGAAAATAAAGATAGAATAAAA-TAAAAAC
* * **
14529936 AAATAATACA-ATTAAA-AT-TTAATTA-ATAATTATTAATATTTTAATAAATTATCAAAAAATT
1 AAAAAAT-CATATTAAAGTTATTAATTATA-AATTATTAATATTTTAATAAATTAT-AAATTATT
14529997 AAATATTTTAA
63 -AATATTTTAA
14530008 ATTAAAATTA
Statistics
Matches: 157, Mismatches: 17, Indels: 19
0.81 0.09 0.10
Matches are distributed among these distances:
109 10 0.06
110 33 0.21
111 28 0.18
112 19 0.12
113 18 0.11
114 48 0.31
115 1 0.01
ACGTcount: A:0.54, C:0.03, G:0.04, T:0.40
Consensus pattern (113 bp):
AAAAAATCATATTAAAGTTATTAATTATAAATTATTAATATTTTAATAAATTATAAATTATTAAT
ATTTTAATAGTTTTAAAAATGAAAATAAAGATAGAATAAAATAAAAAC
Found at i:14530611 original size:25 final size:25
Alignment explanation
Indices: 14530577--14530629 Score: 81
Period size: 25 Copynumber: 2.1 Consensus size: 25
14530567 AGAAAGGATG
14530577 ATGAAGGGAATTGAAAACGTGGG-CA
1 ATGAAGGGAATT-AAAACGTGGGTCA
*
14530602 ATGAAGGGAATTAACACGTGGGTCA
1 ATGAAGGGAATTAAAACGTGGGTCA
14530627 ATG
1 ATG
14530630 CCTTTATTGC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
24 9 0.35
25 17 0.65
ACGTcount: A:0.38, C:0.09, G:0.34, T:0.19
Consensus pattern (25 bp):
ATGAAGGGAATTAAAACGTGGGTCA
Found at i:14535334 original size:21 final size:23
Alignment explanation
Indices: 14535310--14535352 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 23
14535300 GCTACAAATA
14535310 TTTCCTCA-TTTCTT-TTCAATT
1 TTTCCTCATTTTCTTGTTCAATT
*
14535331 TTTCTTCATTTTCTTGTTCAAT
1 TTTCCTCATTTTCTTGTTCAAT
14535353 GGCTATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 7 0.37
22 6 0.32
23 6 0.32
ACGTcount: A:0.14, C:0.21, G:0.02, T:0.63
Consensus pattern (23 bp):
TTTCCTCATTTTCTTGTTCAATT
Found at i:14541810 original size:34 final size:33
Alignment explanation
Indices: 14541762--14541843 Score: 83
Period size: 33 Copynumber: 2.4 Consensus size: 33
14541752 TTCAAGAAGG
* *
14541762 GAAAGAGAACCATTTAAGGGCTGGTTTTGGAGGCT
1 GAAA-AGAGCCATTT-ACGGCTGGTTTTGGAGGCT
* * *
14541797 GAAAAGAGCCATTTTCTGTTGGTTTTGGAGGCT
1 GAAAAGAGCCATTTACGGCTGGTTTTGGAGGCT
* *
14541830 GGAAAGTGCCATTT
1 GAAAAGAGCCATTT
14541844 TTTTGCTGAT
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
33 27 0.68
34 9 0.22
35 4 0.10
ACGTcount: A:0.26, C:0.12, G:0.32, T:0.30
Consensus pattern (33 bp):
GAAAAGAGCCATTTACGGCTGGTTTTGGAGGCT
Found at i:14554709 original size:22 final size:22
Alignment explanation
Indices: 14554674--14554716 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
14554664 TAGAATCCCC
*
14554674 ACAATTATAAAATAAATAAATA
1 ACAATGATAAAATAAATAAATA
*
14554696 ACAATGATAGAATAAATAAAT
1 ACAATGATAAAATAAATAAAT
14554717 GCATAAACAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.65, C:0.05, G:0.05, T:0.26
Consensus pattern (22 bp):
ACAATGATAAAATAAATAAATA
Found at i:14556225 original size:18 final size:18
Alignment explanation
Indices: 14556165--14556226 Score: 52
Period size: 18 Copynumber: 3.1 Consensus size: 18
14556155 TCTCTTGCAG
* *
14556165 TTATTATTATTATTATAT
1 TTATTTTTATTTTTATAT
14556183 TTATTATTATCATTATTTCATTAT
1 TTATT-TT-T-ATT-TTT-A-TAT
14556207 TTATTTTTATTTTTATAT
1 TTATTTTTATTTTTATAT
14556225 TT
1 TT
14556227 TCGTTTGATT
Statistics
Matches: 36, Mismatches: 2, Indels: 12
0.72 0.04 0.24
Matches are distributed among these distances:
18 10 0.28
19 2 0.06
20 4 0.11
21 6 0.17
22 3 0.08
23 3 0.08
24 8 0.22
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.69
Consensus pattern (18 bp):
TTATTTTTATTTTTATAT
Found at i:14557029 original size:23 final size:23
Alignment explanation
Indices: 14557002--14557077 Score: 143
Period size: 23 Copynumber: 3.3 Consensus size: 23
14556992 CTATTTATTA
*
14557002 TATTTCTATAAAAATCTTATTTT
1 TATTTCCATAAAAATCTTATTTT
14557025 TATTTCCATAAAAATCTTATTTT
1 TATTTCCATAAAAATCTTATTTT
14557048 TATTTCCATAAAAATCTTATTTT
1 TATTTCCATAAAAATCTTATTTT
14557071 TATTTCC
1 TATTTCC
14557078 TTATTTTCTA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
23 52 1.00
ACGTcount: A:0.33, C:0.13, G:0.00, T:0.54
Consensus pattern (23 bp):
TATTTCCATAAAAATCTTATTTT
Found at i:14558084 original size:12 final size:13
Alignment explanation
Indices: 14558056--14558085 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
14558046 TGTAGACACT
14558056 AAAATCATAAACA
1 AAAATCATAAACA
14558069 AAAATCATAAACA
1 AAAATCATAAACA
14558082 AAAA
1 AAAA
14558086 AATGAATTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.73, C:0.13, G:0.00, T:0.13
Consensus pattern (13 bp):
AAAATCATAAACA
Found at i:14564550 original size:24 final size:24
Alignment explanation
Indices: 14564515--14564561 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
14564505 CGCCCATAAC
14564515 AAAGAGAAAAGAAAGA-AAGGAAGA
1 AAAGAGAAAAGAAA-ATAAGGAAGA
14564539 AAAGA-AAGAAGAAAATAAGGAAG
1 AAAGAGAA-AAGAAAATAAGGAAG
14564562 GGTTAGTCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 3 0.14
24 18 0.86
ACGTcount: A:0.70, C:0.00, G:0.28, T:0.02
Consensus pattern (24 bp):
AAAGAGAAAAGAAAATAAGGAAGA
Found at i:14567822 original size:14 final size:14
Alignment explanation
Indices: 14567803--14567829 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
14567793 CAAAATTAAT
14567803 TAATTAACTAAAAC
1 TAATTAACTAAAAC
14567817 TAATTAACTAAAA
1 TAATTAACTAAAA
14567830 TTAAAACCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.11, G:0.00, T:0.30
Consensus pattern (14 bp):
TAATTAACTAAAAC
Found at i:14570984 original size:2 final size:2
Alignment explanation
Indices: 14570977--14571019 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
14570967 AAACCCTTAC
14570977 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14571019 A
1 A
14571020 GGACAGTTGA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:14587236 original size:2 final size:2
Alignment explanation
Indices: 14587229--14587254 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
14587219 CAAGCCGACA
14587229 TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC
14587255 ACAATTTCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:14590168 original size:82 final size:81
Alignment explanation
Indices: 14589988--14590167 Score: 258
Period size: 82 Copynumber: 2.2 Consensus size: 81
14589978 AATTTTTTTT
* *
14589988 AAAATTAAAAATAAAAATGGAACATGAAAAAAAATAAAAATAAAAAATTTCAAAAAATTAAAAAG
1 AAAATTAAAAATAAAAATGGAACATCAAAAAAAATAAAAACAAAAAATTTCAAAAAATTAAAAAG
14590053 CTTGGAAAAAACTGAAA
66 CTTGGAAAAAACTG-AA
* * *
14590070 AAAATAAAAAATAAAAATGGAACA-CAAAAAACATAAAAAGCACAAAATTTCAAAAAAAATT-AA
1 AAAATTAAAAATAAAAATGGAACATCAAAAAAAATAAAAA-CAAAAAATTTC--AAAAAATTAAA
14590133 AAGCTTGGAAAAAACTGAA
63 AAGCTTGGAAAAAACTGAA
14590152 AAAATT-AAAATAAAAA
1 AAAATTAAAAATAAAAA
14590168 AAAAAAACAA
Statistics
Matches: 89, Mismatches: 6, Indels: 7
0.87 0.06 0.07
Matches are distributed among these distances:
81 23 0.26
82 39 0.44
83 19 0.21
84 8 0.09
ACGTcount: A:0.69, C:0.07, G:0.08, T:0.17
Consensus pattern (81 bp):
AAAATTAAAAATAAAAATGGAACATCAAAAAAAATAAAAACAAAAAATTTCAAAAAATTAAAAAG
CTTGGAAAAAACTGAA
Found at i:14591227 original size:92 final size:92
Alignment explanation
Indices: 14591104--14591280 Score: 282
Period size: 92 Copynumber: 1.9 Consensus size: 92
14591094 GTACAATAGA
* * * * * *
14591104 GGAAGAATGCCTAATAATGAACGAAAGGATTGGATATAAAGCTTGGAGTGTAAGCACAAGAAAGA
1 GGAAGAATGCCTAATAATGAACCAAAAGATTGGATATAAAGATCGGACTGCAAGCACAAGAAAGA
14591169 TTTAGCTCAAGTAGGCTTGGCAATGGG
66 TTTAGCTCAAGTAGGCTTGGCAATGGG
* *
14591196 GGAAGAATGCCTAATAATGAACCAAAAGATTGGATATAAAGATCGGACTGCAAGCACAAGGAAGG
1 GGAAGAATGCCTAATAATGAACCAAAAGATTGGATATAAAGATCGGACTGCAAGCACAAGAAAGA
14591261 TTTAGCTCAAGTAGGCTTGG
66 TTTAGCTCAAGTAGGCTTGG
14591281 TTTTGTTTGG
Statistics
Matches: 77, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
92 77 1.00
ACGTcount: A:0.38, C:0.12, G:0.28, T:0.21
Consensus pattern (92 bp):
GGAAGAATGCCTAATAATGAACCAAAAGATTGGATATAAAGATCGGACTGCAAGCACAAGAAAGA
TTTAGCTCAAGTAGGCTTGGCAATGGG
Found at i:14592467 original size:16 final size:16
Alignment explanation
Indices: 14592443--14592476 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
14592433 TCAATTTTTG
14592443 TTTTCTATTTTTGATT
1 TTTTCTATTTTTGATT
* *
14592459 TTTTTTATTTTTTATT
1 TTTTCTATTTTTGATT
14592475 TT
1 TT
14592477 AATAGTTTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.03, G:0.03, T:0.82
Consensus pattern (16 bp):
TTTTCTATTTTTGATT
Found at i:14604587 original size:13 final size:13
Alignment explanation
Indices: 14604569--14604597 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
14604559 GGCCTCTTTG
14604569 AATAGCCCTTCTT
1 AATAGCCCTTCTT
14604582 AATAGCCCTTCTT
1 AATAGCCCTTCTT
14604595 AAT
1 AAT
14604598 TTGGAAAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.28, C:0.28, G:0.07, T:0.38
Consensus pattern (13 bp):
AATAGCCCTTCTT
Found at i:14616430 original size:100 final size:96
Alignment explanation
Indices: 14616293--14616487 Score: 320
Period size: 100 Copynumber: 2.0 Consensus size: 96
14616283 TTAAAAATTT
*
14616293 TAATAATAAAAATATAAATATTTATGTAACTATATTTAGATTGGAAACTTACTTTGTTTACATTA
1 TAATAATAAAAATATAAATATTTATGTAAATATATTTAGATTGGAAACTTACTTTGTTTACATTA
14616358 AATACTACTTATTAAAAAAAGAATATTAANAA
66 AATACTACTTATTAAAAAAAGAATATTAA-AA
*
14616390 TAATAA-AAAAATATTTAAATATTTAATTTAATATATATTTAGATTGGAAACTTACTTTGTTTAC
1 TAATAATAAAAATA--TAAATATTT-ATGTAA-ATATATTTAGATTGGAAACTTACTTTGTTTAC
14616454 ATTAAATACTACTTATTAAAAAAAGAATATTAAA
62 ATTAAATACTACTTATTAAAAAAAGAATATTAAA
14616488 TACCAAAAAA
Statistics
Matches: 92, Mismatches: 2, Indels: 6
0.92 0.02 0.06
Matches are distributed among these distances:
96 7 0.08
97 6 0.07
98 9 0.10
99 6 0.07
100 64 0.70
ACGTcount: A:0.49, C:0.06, G:0.06, T:0.39
Consensus pattern (96 bp):
TAATAATAAAAATATAAATATTTATGTAAATATATTTAGATTGGAAACTTACTTTGTTTACATTA
AATACTACTTATTAAAAAAAGAATATTAAAA
Found at i:14616917 original size:6 final size:6
Alignment explanation
Indices: 14616906--14616933 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
14616896 ATTCACTAAT
14616906 GGAGAA GGAGAA GGAGAA GGAGAA GGAG
1 GGAGAA GGAGAA GGAGAA GGAGAA GGAG
14616934 GGAGAGAGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.46, C:0.00, G:0.54, T:0.00
Consensus pattern (6 bp):
GGAGAA
Found at i:14638609 original size:21 final size:21
Alignment explanation
Indices: 14638563--14638602 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
14638553 ATGATAAAAA
* *
14638563 ATATCACATTATTATATTATC
1 ATATCAAATTATTATATCATC
14638584 ATATCAAATTATTATATCA
1 ATATCAAATTATTATATCA
14638603 CATTATCGTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.42, C:0.12, G:0.00, T:0.45
Consensus pattern (21 bp):
ATATCAAATTATTATATCATC
Found at i:14638716 original size:31 final size:31
Alignment explanation
Indices: 14638678--14638742 Score: 121
Period size: 31 Copynumber: 2.1 Consensus size: 31
14638668 TATTAGTTAT
14638678 AAAAACTTATTTGATTCAAAATAAAAATATA
1 AAAAACTTATTTGATTCAAAATAAAAATATA
*
14638709 AAAAACTTATTTGATTTAAAATAAAAATATA
1 AAAAACTTATTTGATTCAAAATAAAAATATA
14638740 AAA
1 AAA
14638743 GATTGATTAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.60, C:0.05, G:0.03, T:0.32
Consensus pattern (31 bp):
AAAAACTTATTTGATTCAAAATAAAAATATA
Found at i:14638791 original size:29 final size:29
Alignment explanation
Indices: 14638728--14638785 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
14638718 TTTGATTTAA
*
14638728 AATAAAAATATAAAAGATTGATTAAATAT
1 AATAAAAATATAAAAGATTGATTAAAAAT
*
14638757 AATAAAAATAT-AAAGATTTATATAAAAAT
1 AATAAAAATATAAAAGATTGAT-TAAAAAT
14638786 TTTAAATAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
28 9 0.35
29 17 0.65
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (29 bp):
AATAAAAATATAAAAGATTGATTAAAAAT
Found at i:14641076 original size:1 final size:1
Alignment explanation
Indices: 14641072--14641112 Score: 82
Period size: 1 Copynumber: 41.0 Consensus size: 1
14641062 CCACCCCCAT
14641072 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
14641113 NNNNNNNNNN
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 40 1.00
ACGTcount: A:0.00, C:1.00, G:0.00, T:0.00
Consensus pattern (1 bp):
C
Found at i:14644735 original size:2 final size:2
Alignment explanation
Indices: 14644728--14644762 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
14644718 NNNNNNNNNN
* *
14644728 TA TA TA TA TA TA TA TA TA TA TA TA TT TA TT TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
14644763 TTAAAAAAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (2 bp):
TA
Found at i:14652109 original size:33 final size:33
Alignment explanation
Indices: 14652072--14652139 Score: 127
Period size: 33 Copynumber: 2.1 Consensus size: 33
14652062 TAATTTTTTT
*
14652072 AAGCTTTTTCAGCCTTTGATTAAATCAAACTCA
1 AAGCTTTTCCAGCCTTTGATTAAATCAAACTCA
14652105 AAGCTTTTCCAGCCTTTGATTAAATCAAACTCA
1 AAGCTTTTCCAGCCTTTGATTAAATCAAACTCA
14652138 AA
1 AA
14652140 CTCTACCATG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.35, C:0.22, G:0.09, T:0.34
Consensus pattern (33 bp):
AAGCTTTTCCAGCCTTTGATTAAATCAAACTCA
Found at i:14657411 original size:45 final size:44
Alignment explanation
Indices: 14657345--14657435 Score: 164
Period size: 45 Copynumber: 2.0 Consensus size: 44
14657335 GCTGTGAAAT
14657345 CCCCAACCCAGCCCACCCCTTGCTAGCCCATGGATTGGGTTGGG
1 CCCCAACCCAGCCCACCCCTTGCTAGCCCATGGATTGGGTTGGG
*
14657389 CCNCCAACCCAGCCCACCCCTTGCTAGCCCATGGGTTGGGTTGGG
1 CC-CCAACCCAGCCCACCCCTTGCTAGCCCATGGATTGGGTTGGG
14657434 CC
1 CC
14657436 AACCCATTTC
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
44 2 0.04
45 43 0.96
ACGTcount: A:0.14, C:0.42, G:0.25, T:0.18
Consensus pattern (44 bp):
CCCCAACCCAGCCCACCCCTTGCTAGCCCATGGATTGGGTTGGG
Found at i:14658697 original size:50 final size:50
Alignment explanation
Indices: 14658633--14658733 Score: 175
Period size: 50 Copynumber: 2.0 Consensus size: 50
14658623 GACGACATCG
* * *
14658633 TATGAGAATCAAGAAATGAGAATTTAACTTTTGCCAATTACGACAAGCGT
1 TATGAGAACCAAGAAATGAAAATCTAACTTTTGCCAATTACGACAAGCGT
14658683 TATGAGAACCAAGAAATGAAAATCTAACTTTTGCCAATTACGACAAGCGT
1 TATGAGAACCAAGAAATGAAAATCTAACTTTTGCCAATTACGACAAGCGT
14658733 T
1 T
14658734 TGGAAAAAAC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.41, C:0.16, G:0.17, T:0.27
Consensus pattern (50 bp):
TATGAGAACCAAGAAATGAAAATCTAACTTTTGCCAATTACGACAAGCGT
Found at i:14664251 original size:27 final size:27
Alignment explanation
Indices: 14664213--14664287 Score: 141
Period size: 27 Copynumber: 2.8 Consensus size: 27
14664203 AGTTGACTGA
*
14664213 ATGAATTCTTTAACAAGATCATAGAAC
1 ATGAAATCTTTAACAAGATCATAGAAC
14664240 ATGAAATCTTTAACAAGATCATAGAAC
1 ATGAAATCTTTAACAAGATCATAGAAC
14664267 ATGAAATCTTTAACAAGATCA
1 ATGAAATCTTTAACAAGATCA
14664288 GAAATATATA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.47, C:0.15, G:0.11, T:0.28
Consensus pattern (27 bp):
ATGAAATCTTTAACAAGATCATAGAAC
Found at i:14668523 original size:17 final size:17
Alignment explanation
Indices: 14668498--14668531 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
14668488 AAATCTTTCA
*
14668498 TTATTTTTAATTTAATT
1 TTATATTTAATTTAATT
*
14668515 TTATATTTATTTTAATT
1 TTATATTTAATTTAATT
14668532 CAAATAATTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TTATATTTAATTTAATT
Found at i:14669590 original size:2 final size:2
Alignment explanation
Indices: 14669583--14669610 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
14669573 GTCCATAGCC
14669583 AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG
14669611 GTAGAGGGGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:14674284 original size:33 final size:33
Alignment explanation
Indices: 14674242--14674305 Score: 128
Period size: 33 Copynumber: 1.9 Consensus size: 33
14674232 TAGATTAACA
14674242 TCACGAGTTAGTCGAGTGAGGTATAAAAAAAAC
1 TCACGAGTTAGTCGAGTGAGGTATAAAAAAAAC
14674275 TCACGAGTTAGTCGAGTGAGGTATAAAAAAA
1 TCACGAGTTAGTCGAGTGAGGTATAAAAAAA
14674306 TGGATAAAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.42, C:0.11, G:0.25, T:0.22
Consensus pattern (33 bp):
TCACGAGTTAGTCGAGTGAGGTATAAAAAAAAC
Found at i:14687599 original size:21 final size:22
Alignment explanation
Indices: 14687562--14687604 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
14687552 ATTTTGTAAT
*
14687562 TTAATTTATAAATTAAA-ATTA
1 TTAATTTATAAAGTAAAGATTA
14687583 TTAATTTGAT-AAGTAAAGATTA
1 TTAATTT-ATAAAGTAAAGATTA
14687605 AACACATTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.49, C:0.00, G:0.07, T:0.44
Consensus pattern (22 bp):
TTAATTTATAAAGTAAAGATTA
Found at i:14687684 original size:22 final size:22
Alignment explanation
Indices: 14687623--14687692 Score: 63
Period size: 22 Copynumber: 3.1 Consensus size: 22
14687613 AAAATATATA
*
14687623 AAATAAATAATATTATTAGTAATT
1 AAATATATAATATTA-TA-TAATT
*
14687647 AAAT-TATTAATTTTATATAATT
1 AAATATA-TAATATTATATAATT
*
14687669 AAATATATAAAATTAT-TAAATT
1 AAATATATAATATTATAT-AATT
14687691 AA
1 AA
14687693 TTAAAATTAC
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
21 1 0.03
22 22 0.56
23 5 0.13
24 11 0.28
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.44
Consensus pattern (22 bp):
AAATATATAATATTATATAATT
Found at i:14688084 original size:29 final size:30
Alignment explanation
Indices: 14688023--14688085 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 30
14688013 TTTATTATAT
* * **
14688023 TTAATTAAATTTTTAAATATTAATTTTTAA
1 TTAAATAAAATTTTAAATATTAATGGTTAA
*
14688053 TTAAATAAAATTTTAAA-ATTAATGGTTGA
1 TTAAATAAAATTTTAAATATTAATGGTTAA
14688082 TTAA
1 TTAA
14688086 TTACTATTAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
29 13 0.46
30 15 0.54
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (30 bp):
TTAAATAAAATTTTAAATATTAATGGTTAA
Found at i:14689032 original size:20 final size:22
Alignment explanation
Indices: 14688993--14689033 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 22
14688983 TAATTTTTAA
14688993 ATAAATTATGATATTATTTATT
1 ATAAATTATGATATTATTTATT
*
14689015 ATAAATT-T-ATATTTTTTAT
1 ATAAATTATGATATTATTTAT
14689034 AAAAAAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 10 0.56
21 1 0.06
22 7 0.39
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (22 bp):
ATAAATTATGATATTATTTATT
Found at i:14692558 original size:30 final size:31
Alignment explanation
Indices: 14692506--14692570 Score: 105
Period size: 30 Copynumber: 2.1 Consensus size: 31
14692496 CATTTTTAAC
*
14692506 ATCGTTATCGAATCGAGAGATTCATATTGTGA
1 ATCGTTATCGAATC-AGAGATTCATATCGTGA
14692538 ATCGTTATCGAATC-GAGATTCATATCGTGA
1 ATCGTTATCGAATCAGAGATTCATATCGTGA
14692568 ATC
1 ATC
14692571 AAAATCTTAA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 18 0.56
32 14 0.44
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.34
Consensus pattern (31 bp):
ATCGTTATCGAATCAGAGATTCATATCGTGA
Found at i:14693756 original size:23 final size:22
Alignment explanation
Indices: 14693662--14693780 Score: 89
Period size: 22 Copynumber: 5.4 Consensus size: 22
14693652 TGTGGTTAGG
* *
14693662 GGTTTTT-GGCATTGCGTGACT
1 GGTTTTTAAGCATTGCATGACT
* ** *
14693683 AGTTGGTAAGGCATTGCATAACT
1 GGTTTTTAA-GCATTGCATGACT
* *
14693706 GGTTTTTAATCATTTCATGA-T
1 GGTTTTTAAGCATTGCATGACT
* * *
14693727 AAGTTTTTAGGCATTGCATGTCT
1 -GGTTTTTAAGCATTGCATGACT
* *
14693750 GGTTTTTAATCATTGCGTGACT
1 GGTTTTTAAGCATTGCATGACT
14693772 GGTTTTTAA
1 GGTTTTTAA
14693781 AGAATTGCGT
Statistics
Matches: 72, Mismatches: 22, Indels: 7
0.71 0.22 0.07
Matches are distributed among these distances:
21 5 0.07
22 49 0.68
23 18 0.25
ACGTcount: A:0.21, C:0.12, G:0.24, T:0.44
Consensus pattern (22 bp):
GGTTTTTAAGCATTGCATGACT
Found at i:14693777 original size:44 final size:44
Alignment explanation
Indices: 14693671--14693779 Score: 130
Period size: 44 Copynumber: 2.5 Consensus size: 44
14693661 GGGTTTTTGG
* *
14693671 CATTGCGTGACTAGTTGGTAAGGCATTGCATAACTGGTTTTTAAT
1 CATTGCGTGACTAGTT-TTTAGGCATTGCATAACTGGTTTTTAAT
* * **
14693716 CATTTCATGA-TAAGTTTTTAGGCATTGCATGTCTGGTTTTTAAT
1 CATTGCGTGACT-AGTTTTTAGGCATTGCATAACTGGTTTTTAAT
*
14693760 CATTGCGTGACTGGTTTTTA
1 CATTGCGTGACTAGTTTTTA
14693780 AAGAATTGCG
Statistics
Matches: 53, Mismatches: 9, Indels: 5
0.79 0.13 0.07
Matches are distributed among these distances:
44 40 0.75
45 13 0.25
ACGTcount: A:0.22, C:0.13, G:0.22, T:0.43
Consensus pattern (44 bp):
CATTGCGTGACTAGTTTTTAGGCATTGCATAACTGGTTTTTAAT
Found at i:14693787 original size:23 final size:23
Alignment explanation
Indices: 14693739--14693802 Score: 67
Period size: 23 Copynumber: 2.8 Consensus size: 23
14693729 GTTTTTAGGC
* * **
14693739 ATTGCATGTCTGGTTTTT-AATC
1 ATTGCGTGACTGGTTTTTAAAGA
14693761 ATTGCGTGACTGGTTTTTAAAGA
1 ATTGCGTGACTGGTTTTTAAAGA
* *
14693784 ATTGCGTGAGTAGTTTTTA
1 ATTGCGTGACTGGTTTTTA
14693803 GTTATTGCGT
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
22 16 0.46
23 19 0.54
ACGTcount: A:0.22, C:0.09, G:0.23, T:0.45
Consensus pattern (23 bp):
ATTGCGTGACTGGTTTTTAAAGA
Found at i:14696746 original size:19 final size:19
Alignment explanation
Indices: 14696722--14696759 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
14696712 CCATTTAACT
* *
14696722 TATTGGAGTATGATTTGAG
1 TATTGGAGGATAATTTGAG
14696741 TATTGGAGGATAATTTGAG
1 TATTGGAGGATAATTTGAG
14696760 GGTTTGGCAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.29, C:0.00, G:0.32, T:0.39
Consensus pattern (19 bp):
TATTGGAGGATAATTTGAG
Found at i:14700860 original size:16 final size:17
Alignment explanation
Indices: 14700835--14700868 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
14700825 TGACTAGTTG
*
14700835 GTAGGTATTGTGT-AAT
1 GTAGGCATTGTGTGAAT
14700851 GTAGGCATTGTGTGAAT
1 GTAGGCATTGTGTGAAT
14700868 G
1 G
14700869 GTTTTTTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.24, C:0.03, G:0.35, T:0.38
Consensus pattern (17 bp):
GTAGGCATTGTGTGAAT
Found at i:14701558 original size:19 final size:20
Alignment explanation
Indices: 14701531--14701576 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
14701521 AAGAGACAAG
*
14701531 ATAAAATTTTTA-GAATAAA
1 ATAATATTTTTATGAATAAA
*
14701550 ATAATA-TTTTATTAATAAA
1 ATAATATTTTTATGAATAAA
14701569 ATAATATT
1 ATAATATT
14701577 AAAATATTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 5 0.22
19 17 0.74
20 1 0.04
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.43
Consensus pattern (20 bp):
ATAATATTTTTATGAATAAA
Found at i:14705643 original size:38 final size:38
Alignment explanation
Indices: 14705592--14705667 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
14705582 ACCATCCGTT
14705592 CTTATGGCTCCAACTACCCACGGTCACCTAAGAGGATC
1 CTTATGGCTCCAACTACCCACGGTCACCTAAGAGGATC
14705630 CTTATGGCTCCAACTACCCACGGTCACCTAAGAGGATC
1 CTTATGGCTCCAACTACCCACGGTCACCTAAGAGGATC
14705668 TTTAGTTCCT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.26, C:0.34, G:0.18, T:0.21
Consensus pattern (38 bp):
CTTATGGCTCCAACTACCCACGGTCACCTAAGAGGATC
Found at i:14716107 original size:16 final size:17
Alignment explanation
Indices: 14716086--14716122 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
14716076 TGGATTAAAT
14716086 TCTAATCTTA-ATCC-AA
1 TCTAATC-TACATCCAAA
14716102 TCTAATCTACATCCAAA
1 TCTAATCTACATCCAAA
14716119 TCTA
1 TCTA
14716123 GATATACATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 2 0.11
16 11 0.58
17 6 0.32
ACGTcount: A:0.38, C:0.27, G:0.00, T:0.35
Consensus pattern (17 bp):
TCTAATCTACATCCAAA
Found at i:14718239 original size:53 final size:53
Alignment explanation
Indices: 14718176--14718279 Score: 181
Period size: 53 Copynumber: 2.0 Consensus size: 53
14718166 GGTACTGAGC
* * *
14718176 ACCATTAGGTGTGCATAATGTCCAATGGTACTCAGTGCCACTAGGTGCTAAGT
1 ACCATTAGGTGTGCAGAATGTCCAATGGTACTAAGTACCACTAGGTGCTAAGT
14718229 ACCATTAGGTGTGCAGAATGTCCAATGGTACTAAGTACCACTAGGTGCTAA
1 ACCATTAGGTGTGCAGAATGTCCAATGGTACTAAGTACCACTAGGTGCTAA
14718280 CTCCATTTGT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
53 48 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (53 bp):
ACCATTAGGTGTGCAGAATGTCCAATGGTACTAAGTACCACTAGGTGCTAAGT
Found at i:14720052 original size:2 final size:2
Alignment explanation
Indices: 14720045--14720097 Score: 71
Period size: 2 Copynumber: 29.0 Consensus size: 2
14720035 TACCATTCAT
14720045 TA TA TA TA TA TA -A TA TA TA -A TA T- TA TA TA TA TA TA T- TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
14720083 T- TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA
14720098 AAATAGAGAA
Statistics
Matches: 46, Mismatches: 0, Indels: 10
0.82 0.00 0.18
Matches are distributed among these distances:
1 5 0.11
2 41 0.89
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:14720056 original size:26 final size:21
Alignment explanation
Indices: 14720010--14720051 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
14720000 ATTTTCTATT
14720010 TTTTACCATTCTAATTATATA
1 TTTTACCATTCTAATTATATA
14720031 NTTTTACCATTC--ATTATATA
1 -TTTTACCATTCTAATTATATA
14720051 T
1 T
14720052 ATATAATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 1 0.05
20 8 0.40
22 11 0.55
ACGTcount: A:0.31, C:0.14, G:0.00, T:0.52
Consensus pattern (21 bp):
TTTTACCATTCTAATTATATA
Found at i:14720577 original size:18 final size:18
Alignment explanation
Indices: 14720554--14720588 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
14720544 AAATGCTTTC
14720554 TTAGCTCCCTGAACTCTT
1 TTAGCTCCCTGAACTCTT
*
14720572 TTAGCTCCTTGAACTCT
1 TTAGCTCCCTGAACTCT
14720589 CTCAGCTCTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.17, C:0.31, G:0.11, T:0.40
Consensus pattern (18 bp):
TTAGCTCCCTGAACTCTT
Found at i:14720595 original size:18 final size:18
Alignment explanation
Indices: 14720556--14720596 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
14720546 ATGCTTTCTT
* *
14720556 AGCTCCCTGAACTCTTTT
1 AGCTCCCTGAACTCTCTC
*
14720574 AGCTCCTTGAACTCTCTC
1 AGCTCCCTGAACTCTCTC
14720592 AGCTC
1 AGCTC
14720597 TGTCGGTAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.17, C:0.37, G:0.12, T:0.34
Consensus pattern (18 bp):
AGCTCCCTGAACTCTCTC
Found at i:14732137 original size:13 final size:13
Alignment explanation
Indices: 14732119--14732150 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
14732109 AGAAATTTTA
14732119 TGCTTTGGTTATT
1 TGCTTTGGTTATT
14732132 TGCTTTGGTTATT
1 TGCTTTGGTTATT
14732145 TGCTTT
1 TGCTTT
14732151 ATAGTATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.06, C:0.09, G:0.22, T:0.62
Consensus pattern (13 bp):
TGCTTTGGTTATT
Found at i:14732660 original size:15 final size:15
Alignment explanation
Indices: 14732640--14732677 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
14732630 CAGATATTTT
14732640 GATTTTAAAGCTTTG
1 GATTTTAAAGCTTTG
* *
14732655 GATTTTAAAGTTTTT
1 GATTTTAAAGCTTTG
14732670 GATTTTAA
1 GATTTTAA
14732678 GGTTGTTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.29, C:0.03, G:0.16, T:0.53
Consensus pattern (15 bp):
GATTTTAAAGCTTTG
Found at i:14739579 original size:2 final size:2
Alignment explanation
Indices: 14739572--14739625 Score: 99
Period size: 2 Copynumber: 27.0 Consensus size: 2
14739562 NNNNNNNNNN
14739572 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
14739614 TA TA AA TA TA TA
1 TA TA TA TA TA TA
14739626 GGTCCTAAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:14741749 original size:19 final size:19
Alignment explanation
Indices: 14741714--14741751 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
14741704 CTATTTAACA
**
14741714 TATTGGAGTATGTTTTGAG
1 TATTGGAGTATAATTTGAG
14741733 TATTGGAGTATAATTTGAG
1 TATTGGAGTATAATTTGAG
14741752 GGTTTGGCAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.26, C:0.00, G:0.29, T:0.45
Consensus pattern (19 bp):
TATTGGAGTATAATTTGAG
Found at i:14741958 original size:28 final size:29
Alignment explanation
Indices: 14741915--14741978 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
14741905 ATGTCTATGG
* *
14741915 GTAATTTTTCAGTTTT-TGGGACAAAAAT
1 GTAATTTTTCACTTTTAGGGGACAAAAAT
* *
14741943 GTAATTTTTGACTTTTACGGGGGCAAAAAT
1 GTAATTTTTCACTTTTA-GGGGACAAAAAT
14741973 GTAATT
1 GTAATT
14741979 ACAAAAAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
28 14 0.47
30 16 0.53
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (29 bp):
GTAATTTTTCACTTTTAGGGGACAAAAAT
Found at i:14743152 original size:13 final size:13
Alignment explanation
Indices: 14743134--14743160 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
14743124 AGAGAAATTG
14743134 TGATTTTATAAAA
1 TGATTTTATAAAA
14743147 TGATTTTATAAAA
1 TGATTTTATAAAA
14743160 T
1 T
14743161 TTCTGGAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.48
Consensus pattern (13 bp):
TGATTTTATAAAA
Found at i:14749221 original size:28 final size:27
Alignment explanation
Indices: 14749185--14749237 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
14749175 ATATCCTGGT
*
14749185 GGTGGAAAATTACAATTTTGCCCCTGA
1 GGTGGAAAATTACAATTTTACCCCTGA
*
14749212 GGTGGCAAAATTACCATTTTACCCCT
1 GGTGG-AAAATTACAATTTTACCCCT
14749238 ATACTCCAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 5 0.22
28 18 0.78
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (27 bp):
GGTGGAAAATTACAATTTTACCCCTGA
Found at i:14749305 original size:20 final size:20
Alignment explanation
Indices: 14749282--14749327 Score: 67
Period size: 20 Copynumber: 2.3 Consensus size: 20
14749272 CTTCTAAACC
14749282 TCAAATCATACT-TCAATAAG
1 TCAAATCATACTCT-AATAAG
*
14749302 TCAAATTATACTCTAATAAG
1 TCAAATCATACTCTAATAAG
14749322 TCAAAT
1 TCAAAT
14749328 GGGGTCAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 23 0.96
21 1 0.04
ACGTcount: A:0.46, C:0.17, G:0.04, T:0.33
Consensus pattern (20 bp):
TCAAATCATACTCTAATAAG
Found at i:14750634 original size:25 final size:25
Alignment explanation
Indices: 14750605--14750688 Score: 87
Period size: 25 Copynumber: 3.2 Consensus size: 25
14750595 GTGGTCGCAA
14750605 CCACGTATATCAACTTGTGGCCTAG
1 CCACGTATATCAACTTGTGGCCTAG
* * *
14750630 CCACGTATAACAACTTGTGGCTTTG
1 CCACGTATATCAACTTGTGGCCTAG
* * *
14750655 CTACGTATAATCATAGATCGTGGCCTAG
1 CCACGTAT-ATCA-A-CTTGTGGCCTAG
14750683 CCACGT
1 CCACGT
14750689 CCAACAAACG
Statistics
Matches: 46, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
25 29 0.63
26 3 0.07
27 1 0.02
28 13 0.28
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (25 bp):
CCACGTATATCAACTTGTGGCCTAG
Found at i:14757106 original size:17 final size:17
Alignment explanation
Indices: 14757076--14757108 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
14757066 ATATATATAA
14757076 AAAGATAAAAAAAAAAG
1 AAAGATAAAAAAAAAAG
14757093 AAAGA-AAAAGAAAAAA
1 AAAGATAAAA-AAAAAA
14757109 TATTTAGTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.85, C:0.00, G:0.12, T:0.03
Consensus pattern (17 bp):
AAAGATAAAAAAAAAAG
Found at i:14757520 original size:19 final size:20
Alignment explanation
Indices: 14757493--14757533 Score: 50
Period size: 19 Copynumber: 2.1 Consensus size: 20
14757483 AGCCTCGACT
14757493 AAATCAAA-TAGAGAAT-TTA
1 AAATCAAATTA-AGAATATTA
*
14757512 AAATGAAATTAAGAATATTA
1 AAATCAAATTAAGAATATTA
14757532 AA
1 AA
14757534 GTCTCAGAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
19 12 0.63
20 7 0.37
ACGTcount: A:0.61, C:0.02, G:0.10, T:0.27
Consensus pattern (20 bp):
AAATCAAATTAAGAATATTA
Found at i:14757908 original size:28 final size:30
Alignment explanation
Indices: 14757867--14757926 Score: 70
Period size: 30 Copynumber: 2.1 Consensus size: 30
14757857 GTCTATGGGC
* *
14757867 AATTTTTCAGTTTT-T-GGGGTAAAAATGT
1 AATTTTTCACTTTTATAGGGGCAAAAATGT
* *
14757895 AATTTTTGACTTTTATAGGGGCAAAAGTGT
1 AATTTTTCACTTTTATAGGGGCAAAAATGT
14757925 AA
1 AA
14757927 ATTTCAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
28 12 0.46
29 1 0.04
30 13 0.50
ACGTcount: A:0.32, C:0.05, G:0.22, T:0.42
Consensus pattern (30 bp):
AATTTTTCACTTTTATAGGGGCAAAAATGT
Found at i:14769255 original size:25 final size:28
Alignment explanation
Indices: 14769196--14769256 Score: 92
Period size: 25 Copynumber: 2.3 Consensus size: 28
14769186 TAAATTTTTT
*
14769196 AAAATTACACTTTTACCCCCATAAAGTG
1 AAAATTACACTTTTACCCCCATAAACTG
14769224 AAAATTACA-TTTTA-CCCCA-AAACTG
1 AAAATTACACTTTTACCCCCATAAACTG
14769249 AAAATTAC
1 AAAATTAC
14769257 CCATAGATAT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
25 13 0.41
26 5 0.16
27 5 0.16
28 9 0.28
ACGTcount: A:0.44, C:0.23, G:0.05, T:0.28
Consensus pattern (28 bp):
AAAATTACACTTTTACCCCCATAAACTG
Found at i:14769289 original size:74 final size:78
Alignment explanation
Indices: 14769205--14769359 Score: 264
Period size: 78 Copynumber: 2.0 Consensus size: 78
14769195 TAAAATTACA
14769205 CTTTTACCCCCATAAAGTG-AAAATTACA-TTTTACCCC-AAAACTG-AAAATTACCCATAGATA
1 CTTTTACCCCCATAAAGTGAAAAATTACATTTTTACCCCAAAAACTGAAAAATTACCCATAGATA
14769266 TATTTTTTCATCC
66 TATTTTTTCATCC
* *
14769279 CTTTTGCCCCCATAAAGTGAAAAATTACATTTTTACCCCAAAAACTGAAAAATTGCCCATAGATA
1 CTTTTACCCCCATAAAGTGAAAAATTACATTTTTACCCCAAAAACTGAAAAATTACCCATAGATA
14769344 TATTTTTTCATCC
66 TATTTTTTCATCC
14769357 CTT
1 CTT
14769360 ATACTCATAC
Statistics
Matches: 75, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
74 18 0.24
75 9 0.12
76 9 0.12
77 7 0.09
78 32 0.43
ACGTcount: A:0.35, C:0.24, G:0.06, T:0.34
Consensus pattern (78 bp):
CTTTTACCCCCATAAAGTGAAAAATTACATTTTTACCCCAAAAACTGAAAAATTACCCATAGATA
TATTTTTTCATCC
Found at i:14785782 original size:65 final size:65
Alignment explanation
Indices: 14785705--14785836 Score: 194
Period size: 65 Copynumber: 2.0 Consensus size: 65
14785695 TTGGCATTAG
* * * *
14785705 AAAAAAAATCGAATCTGTTTTAAGATAGGTCGAGCCTAGGTT-AAGTTTAGAAATTTCAATTTTT
1 AAAAAAAATCGAATCTGTTTTAAGATAGATCAAGCCTA-GTTCAAGTCTAGAAATTTCAATTTGT
14785769 A
65 A
* *
14785770 AAAAAAAATCGAATCTGTTTTGAGATAGATCAAGCCTAGTTCAAGTCTAGGAATTTCAATTTGTA
1 AAAAAAAATCGAATCTGTTTTAAGATAGATCAAGCCTAGTTCAAGTCTAGAAATTTCAATTTGTA
14785835 AA
1 AA
14785837 TCAAACTTGT
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
64 3 0.05
65 57 0.95
ACGTcount: A:0.39, C:0.11, G:0.17, T:0.33
Consensus pattern (65 bp):
AAAAAAAATCGAATCTGTTTTAAGATAGATCAAGCCTAGTTCAAGTCTAGAAATTTCAATTTGTA
Found at i:14785942 original size:58 final size:58
Alignment explanation
Indices: 14785880--14786150 Score: 287
Period size: 58 Copynumber: 4.7 Consensus size: 58
14785870 CAAGTCTAGG
14785880 AATTCCAATTTTAAATTGAACCTATCTTGAGATAGGTCAAACTTAGATTAAATTTAGA
1 AATTCCAATTTTAAATTGAACCTATCTTGAGATAGGTCAAACTTAGATTAAATTTAGA
* ** *
14785938 AATTCCAATTTTAAATTGAACCTATCTTAAGATAGGTTGAACTTAGATTAAATTTAGG
1 AATTCCAATTTTAAATTGAACCTATCTTGAGATAGGTCAAACTTAGATTAAATTTAGA
* * * * * * * * *
14785996 AATTCTAATTTTAAATCGAACCTGT-TTGATATAGATCAAGCTTAGATCAAGTCTAGA
1 AATTCCAATTTTAAATTGAACCTATCTTGAGATAGGTCAAACTTAGATTAAATTTAGA
* * * * *
14786053 AATTCTAATTTTAAATTGAACCT-GCTTTGAGATAGATCGAGCTTAGATTAAATTTAAGA
1 AATTCCAATTTTAAATTGAACCTATC-TTGAGATAGGTCAAACTTAGATTAAATTT-AGA
* * * *
14786112 ATTTCAAATTTTTAAATCGAACTTA-CATTGAGATAGGTC
1 AATTCCAA-TTTTAAATTGAACCTATC-TTGAGATAGGTC
14786151 GAGCATGGGC
Statistics
Matches: 178, Mismatches: 30, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
57 44 0.25
58 100 0.56
59 9 0.05
60 25 0.14
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.37
Consensus pattern (58 bp):
AATTCCAATTTTAAATTGAACCTATCTTGAGATAGGTCAAACTTAGATTAAATTTAGA
Found at i:14786086 original size:115 final size:115
Alignment explanation
Indices: 14785775--14786133 Score: 346
Period size: 115 Copynumber: 3.1 Consensus size: 115
14785765 TTTTAAAAAA
* * * * *
14785775 AAATCGAATCTGTTTTGAGATAGATCAAGCCTAGTTCAAGTCTAGGAATT-TCAATTTGTAAATC
1 AAATCGAACCTG-TTTGAGATAGATCAAGCTTAGATCAAGTCTAGAAATTCT-AATTT-TAAATT
* * * * * * * * * *
14785839 AAACTTGTTTTGATATAAGTTG-AGTCTAGATCAAGTCTAGGAATTCCAATTTT
63 GAACCTGATTTGAGATAGGTTGAACT-TAGATTAAATTTAGGAATTCAAATTTT
* * * * * * * *
14785892 AAATTGAACCTATCTTGAGATAGGTCAAACTTAGATTAAATTTAGAAATTCCAATTTTAAATTGA
1 AAATCGAACCTGT-TTGAGATAGATCAAGCTTAGATCAAGTCTAGAAATTCTAATTTTAAATTGA
* *
14785957 ACCT-ATCTTAAGATAGGTTGAACTTAGATTAAATTTAGGAATTCTAATTTT
65 ACCTGAT-TTGAGATAGGTTGAACTTAGATTAAATTTAGGAATTCAAATTTT
*
14786008 AAATCGAACCTGTTTGATATAGATCAAGCTTAGATCAAGTCTAGAAATTCTAATTTTAAATTGAA
1 AAATCGAACCTGTTTGAGATAGATCAAGCTTAGATCAAGTCTAGAAATTCTAATTTTAAATTGAA
* * * * *
14786073 CCTGCTTTGAGATAGATCGAGCTTAGATTAAATTTAAGAATTTCAAATTTTT
66 CCTGATTTGAGATAGGTTGAACTTAGATTAAATTTAGGAA-TTCAAA-TTTT
14786125 AAATCGAAC
1 AAATCGAAC
14786134 TTACATTGAG
Statistics
Matches: 195, Mismatches: 40, Indels: 14
0.78 0.16 0.06
Matches are distributed among these distances:
115 78 0.40
116 60 0.31
117 57 0.29
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.36
Consensus pattern (115 bp):
AAATCGAACCTGTTTGAGATAGATCAAGCTTAGATCAAGTCTAGAAATTCTAATTTTAAATTGAA
CCTGATTTGAGATAGGTTGAACTTAGATTAAATTTAGGAATTCAAATTTT
Found at i:14788464 original size:20 final size:21
Alignment explanation
Indices: 14788419--14788465 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
14788409 AGATGTCTAA
*
14788419 AATAATTATTTGAAATGAAAT
1 AATAATTATTTGAAATAAAAT
* *
14788440 TATAATTGTTTG-AATAAAAT
1 AATAATTATTTGAAATAAAAT
14788460 AATAAT
1 AATAAT
14788466 ATTCAATGAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
20 12 0.55
21 10 0.45
ACGTcount: A:0.51, C:0.00, G:0.09, T:0.40
Consensus pattern (21 bp):
AATAATTATTTGAAATAAAAT
Found at i:14790994 original size:21 final size:22
Alignment explanation
Indices: 14790965--14791008 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
14790955 GAGTAGTTAA
14790965 TTTAAGTTATTTTA-ATTAAAT
1 TTTAAGTTATTTTATATTAAAT
* *
14790986 TTTATGTTATTTTATTTTAAAT
1 TTTAAGTTATTTTATATTAAAT
14791008 T
1 T
14791009 ACTTTAAGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.64
Consensus pattern (22 bp):
TTTAAGTTATTTTATATTAAAT
Found at i:14793114 original size:4 final size:4
Alignment explanation
Indices: 14793105--14793129 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
14793095 ATAATAATAA
14793105 AAAT AAAT AAAT AAAT AAAT AAAT A
1 AAAT AAAT AAAT AAAT AAAT AAAT A
14793130 GTAATAATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:14793848 original size:30 final size:30
Alignment explanation
Indices: 14793811--14793890 Score: 108
Period size: 30 Copynumber: 2.7 Consensus size: 30
14793801 ATCGAATTGA
**
14793811 GAGATTCATACTGTGAATTGTTATCGAATC
1 GAGATTCATACTGTGAATCATTATCGAATC
*
14793841 TAGATTCAT-CATGTGAATCATTATCGAATC
1 GAGATTCATAC-TGTGAATCATTATCGAATC
*
14793871 GAGATTCATATTGTGAATCA
1 GAGATTCATACTGTGAATCA
14793891 AAATCTTAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
29 1 0.02
30 42 0.98
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36
Consensus pattern (30 bp):
GAGATTCATACTGTGAATCATTATCGAATC
Found at i:14794441 original size:18 final size:19
Alignment explanation
Indices: 14794418--14794460 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
14794408 AATATAAACT
14794418 GAAAG-AACAACTATAAAA
1 GAAAGAAACAACTATAAAA
*
14794436 GAAAGATAATAACTATAAAA
1 GAAAGA-AACAACTATAAAA
*
14794456 AAAAG
1 GAAAG
14794461 TATTTAGAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 5 0.24
20 16 0.76
ACGTcount: A:0.67, C:0.07, G:0.12, T:0.14
Consensus pattern (19 bp):
GAAAGAAACAACTATAAAA
Found at i:14796725 original size:25 final size:24
Alignment explanation
Indices: 14796697--14796743 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
14796687 GGGGCATCTT
14796697 CTAGAGCTTATATTTCCTCTTTTTG
1 CTAGAGCTTATATTTCCT-TTTTTG
* *
14796722 CTAGAGTTTCTATTTCCTTTTT
1 CTAGAGCTTATATTTCCTTTTT
14796744 CTGACCATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.15, C:0.19, G:0.11, T:0.55
Consensus pattern (24 bp):
CTAGAGCTTATATTTCCTTTTTTG
Found at i:14797695 original size:21 final size:21
Alignment explanation
Indices: 14797669--14797716 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
14797659 ATATTTAAAT
*
14797669 GATCCACACAGTGGATGTTTG
1 GATCCACACAGTGAATGTTTG
**
14797690 GATCCACATGGTGAATGTTTG
1 GATCCACACAGTGAATGTTTG
14797711 GATCCA
1 GATCCA
14797717 TATATTTCAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (21 bp):
GATCCACACAGTGAATGTTTG
Found at i:14799246 original size:21 final size:20
Alignment explanation
Indices: 14799214--14799256 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
14799204 TATGAAATAT
* *
14799214 AAAATAAAAGAATAATTATA
1 AAAAAAAAAGAATAACTATA
14799234 AAAAAAAAGAGAATAACTATA
1 AAAAAAAA-AGAATAACTATA
14799255 AA
1 AA
14799257 GAAAGTAGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.72, C:0.02, G:0.07, T:0.19
Consensus pattern (20 bp):
AAAAAAAAAGAATAACTATA
Found at i:14799447 original size:5 final size:5
Alignment explanation
Indices: 14799437--14799465 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
14799427 TATCTAAATC
14799437 TAATA TAATA TAATA TAATA TAATA TAAT
1 TAATA TAATA TAATA TAATA TAATA TAAT
14799466 GGATATTCAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
TAATA
Found at i:14799923 original size:2 final size:2
Alignment explanation
Indices: 14799916--14799947 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
14799906 CTAAGCATAT
14799916 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
14799948 CATTTCCAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:14801410 original size:83 final size:83
Alignment explanation
Indices: 14801308--14801468 Score: 295
Period size: 83 Copynumber: 1.9 Consensus size: 83
14801298 AATGCTTCCT
* *
14801308 CCAAGCTGTTTGTTTTATACATTCTGCTTGTGTTTCAAAATCAAGGTGTAAAGTGTTTTCTTGCA
1 CCAAGCTGTTTGTTTTATACATTCTGCTTGTGTTTCAAAAACAAGGTGTAAAGTGTTTTCTTGAA
14801373 TATTAGTTTGTATAAAAA
66 TATTAGTTTGTATAAAAA
14801391 CCAAGCTGTTTGTTTTATACATTCTGCTTGTGTTTCAAAAACAAGGTGTAAAGTGTTTTCTTGAA
1 CCAAGCTGTTTGTTTTATACATTCTGCTTGTGTTTCAAAAACAAGGTGTAAAGTGTTTTCTTGAA
*
14801456 TGTTAGTTTGTAT
66 TATTAGTTTGTAT
14801469 GAAATTAGAC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
83 75 1.00
ACGTcount: A:0.26, C:0.12, G:0.18, T:0.44
Consensus pattern (83 bp):
CCAAGCTGTTTGTTTTATACATTCTGCTTGTGTTTCAAAAACAAGGTGTAAAGTGTTTTCTTGAA
TATTAGTTTGTATAAAAA
Found at i:14801449 original size:43 final size:43
Alignment explanation
Indices: 14801318--14801449 Score: 125
Period size: 43 Copynumber: 3.1 Consensus size: 43
14801308 CCAAGCTGTT
*
14801318 TGTTTTATACATTCTGCTTGTGTTTCAAAATCAAGGTGTAAAG
1 TGTTTTATACATTCTGCTTGTGTTTCAAAAACAAGGTGTAAAG
* * * * *
14801361 TGTTTTCTTGCATAT-TAG-TT-TGTAT-AAAAACCAAGCTGT---T
1 TGTTTT-ATACAT-TCT-GCTTGTGTTTCAAAAA-CAAGGTGTAAAG
14801401 TGTTTTATACATTCTGCTTGTGTTTCAAAAACAAGGTGTAAAG
1 TGTTTTATACATTCTGCTTGTGTTTCAAAAACAAGGTGTAAAG
14801444 TGTTTT
1 TGTTTT
14801450 CTTGAATGTT
Statistics
Matches: 67, Mismatches: 11, Indels: 22
0.67 0.11 0.22
Matches are distributed among these distances:
38 2 0.03
39 7 0.10
40 17 0.25
41 5 0.07
42 4 0.06
43 23 0.34
44 7 0.10
45 2 0.03
ACGTcount: A:0.27, C:0.11, G:0.17, T:0.44
Consensus pattern (43 bp):
TGTTTTATACATTCTGCTTGTGTTTCAAAAACAAGGTGTAAAG
Found at i:14812298 original size:2 final size:2
Alignment explanation
Indices: 14812291--14812329 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
14812281 TTAGGTGCAA
14812291 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
14812330 AATTAAAATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:14812827 original size:31 final size:33
Alignment explanation
Indices: 14812753--14812850 Score: 82
Period size: 31 Copynumber: 3.1 Consensus size: 33
14812743 AAATGATTAA
*
14812753 ATTAAAATATTTATAATTAAATATAATTATATT
1 ATTAAAATATTTATAATTAAATATAATTATAAT
*
14812786 ATT-CAA-ATTTATAA-TAAA-A-AATTATAAAT
1 ATTAAAATATTTATAATTAAATATAATTAT-AAT
* * *
14812815 ATTATAATATTTATCAAATATAATAAAATT-TAAT
1 ATTAAAATATTTAT-AATTA-AATATAATTATAAT
14812849 AT
1 AT
14812851 CAATAAATCT
Statistics
Matches: 54, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
28 6 0.11
29 6 0.11
30 6 0.11
31 14 0.26
32 4 0.07
33 5 0.09
34 7 0.13
35 2 0.04
36 4 0.07
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (33 bp):
ATTAAAATATTTATAATTAAATATAATTATAAT
Found at i:14812833 original size:19 final size:18
Alignment explanation
Indices: 14812795--14812846 Score: 59
Period size: 19 Copynumber: 2.8 Consensus size: 18
14812785 TATTCAAATT
*
14812795 TATAATAAAAAATTATAAA
1 TATAAT-AAAATTTATAAA
* *
14812814 TATTATAATATTTATCAAA
1 TATAATAAAATTTAT-AAA
14812833 TATAATAAAATTTA
1 TATAATAAAATTTA
14812847 ATATCAATAA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
18 7 0.26
19 20 0.74
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (18 bp):
TATAATAAAATTTATAAA
Found at i:14820359 original size:18 final size:19
Alignment explanation
Indices: 14820338--14820375 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
14820328 AATTATTTTT
* *
14820338 AATTATATTATTA-ATGAA
1 AATTAAATTAATATATGAA
14820356 AATTAAATTAATATATGAA
1 AATTAAATTAATATATGAA
14820375 A
1 A
14820376 GTTAGTTAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.39
Consensus pattern (19 bp):
AATTAAATTAATATATGAA
Found at i:14821060 original size:82 final size:82
Alignment explanation
Indices: 14820923--14821079 Score: 287
Period size: 82 Copynumber: 1.9 Consensus size: 82
14820913 GATATTACTT
*
14820923 AAAATTAACAAAAACGATTAATTAAGGACTCAATTGAAAAGTTATGAGAAAAATCAGAAATTGAG
1 AAAATTAACAAAAACGATTAATTAAGGACTCAATTGAAAAGTTATGAGAAAAATCAGAAATTGAA
14820988 GTTTAAATTTTGTTGTA
66 GTTTAAATTTTGTTGTA
* *
14821005 AAAATTAACAAAGAGGATTAATTAAGGACTCAATTGAAAAGTTATGAGAAAAATCAGAAATTGAA
1 AAAATTAACAAAAACGATTAATTAAGGACTCAATTGAAAAGTTATGAGAAAAATCAGAAATTGAA
14821070 GTTTAAATTT
66 GTTTAAATTT
14821080 GATAAAAAGA
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
82 72 1.00
ACGTcount: A:0.49, C:0.06, G:0.16, T:0.29
Consensus pattern (82 bp):
AAAATTAACAAAAACGATTAATTAAGGACTCAATTGAAAAGTTATGAGAAAAATCAGAAATTGAA
GTTTAAATTTTGTTGTA
Found at i:14821636 original size:27 final size:27
Alignment explanation
Indices: 14821596--14821649 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
14821586 TATGATTGTG
14821596 CAATACCCTGGTTGCAATGGCTCTTTA
1 CAATACCCTGGTTGCAATGGCTCTTTA
* *
14821623 CAATGCCCTTGTTGCAATGGCTCTTTA
1 CAATACCCTGGTTGCAATGGCTCTTTA
14821650 TCCATAAATG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.20, C:0.26, G:0.19, T:0.35
Consensus pattern (27 bp):
CAATACCCTGGTTGCAATGGCTCTTTA
Found at i:14821700 original size:104 final size:104
Alignment explanation
Indices: 14821527--14821727 Score: 269
Period size: 104 Copynumber: 1.9 Consensus size: 104
14821517 TGTAATGCAT
* *
14821527 TTGTTGCAATGACTCTTTACCCATAAAATGTTTATCTCAGACGATCCTTGTAATTTTGATATGAT
1 TTGTTGCAATGACTCTTTACCCATAAAATGTTTATCTCAAACAATCCTTGTAATTTTGATATGAT
* *
14821592 TGTGCAATACCCTGGTTGCAATGGCTCTTTACAATGCCC
66 TGTGCAATACCCTCGTTGCAATAGCTCTTTACAATGCCC
* * * * * *
14821631 TTGTTGCAATGGCTCTTTATCCAT-AAATGGTTTATTTTAAACAATCCTTGTATTTTTGATGTGA
1 TTGTTGCAATGACTCTTTACCCATAAAAT-GTTTATCTCAAACAATCCTTGTAATTTTGATATGA
** *
14821695 TTGTGCAATGTCCTCGTTGCAATAGCTTTTTAC
65 TTGTGCAATACCCTCGTTGCAATAGCTCTTTAC
14821728 CGATAAAGGA
Statistics
Matches: 83, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
103 4 0.05
104 79 0.95
ACGTcount: A:0.24, C:0.18, G:0.16, T:0.41
Consensus pattern (104 bp):
TTGTTGCAATGACTCTTTACCCATAAAATGTTTATCTCAAACAATCCTTGTAATTTTGATATGAT
TGTGCAATACCCTCGTTGCAATAGCTCTTTACAATGCCC
Found at i:14822001 original size:25 final size:25
Alignment explanation
Indices: 14821945--14821993 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 25
14821935 TTAAAATAAA
14821945 AATAAAAAAAATACTAATCTAAATAG
1 AATAAAAAAAATAC-AATCTAAATAG
14821971 AATAAAAAAAATA-AATCTTAAAT
1 AATAAAAAAAATACAATC-TAAAT
14821994 CAACTAAACT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 4 0.18
25 5 0.23
26 13 0.59
ACGTcount: A:0.67, C:0.06, G:0.02, T:0.24
Consensus pattern (25 bp):
AATAAAAAAAATACAATCTAAATAG
Found at i:14822968 original size:32 final size:30
Alignment explanation
Indices: 14822932--14823010 Score: 81
Period size: 31 Copynumber: 2.6 Consensus size: 30
14822922 AATTATTAGT
14822932 TATAAAAATTTATTTAATTAAAAATAAAAAAA
1 TATAAAAATTTATTTAA--AAAAATAAAAAAA
* * * *
14822964 TATAAATACTTAATTGAACAAAATAAAAAAA
1 TATAAA-AATTTATTTAAAAAAATAAAAAAA
14822995 TA-AAAAA-TTATTTAAA
1 TATAAAAATTTATTTAAA
14823011 TTTTTTTGAA
Statistics
Matches: 38, Mismatches: 8, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
28 6 0.16
29 1 0.03
30 3 0.08
31 14 0.37
32 6 0.16
33 8 0.21
ACGTcount: A:0.65, C:0.03, G:0.01, T:0.32
Consensus pattern (30 bp):
TATAAAAATTTATTTAAAAAAATAAAAAAA
Found at i:14824626 original size:17 final size:18
Alignment explanation
Indices: 14824604--14824638 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
14824594 TTTAGTGGTA
*
14824604 AATCTA-ACCTATAGATT
1 AATCTATACCAATAGATT
14824621 AATCTATACCAATAGATT
1 AATCTATACCAATAGATT
14824639 TGCTTACTGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.43, C:0.17, G:0.06, T:0.34
Consensus pattern (18 bp):
AATCTATACCAATAGATT
Found at i:14830889 original size:24 final size:24
Alignment explanation
Indices: 14830862--14830930 Score: 102
Period size: 24 Copynumber: 2.9 Consensus size: 24
14830852 TTAGGTTGTT
* *
14830862 ACACACCATATACAGAAACATGTG
1 ACACGCCATGTACAGAAACATGTG
14830886 ACACGCCATGTACAGAAACATGTG
1 ACACGCCATGTACAGAAACATGTG
* *
14830910 ACATGCCATGTACAAAAACAT
1 ACACGCCATGTACAGAAACAT
14830931 TTAACAAACC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.43, C:0.25, G:0.14, T:0.17
Consensus pattern (24 bp):
ACACGCCATGTACAGAAACATGTG
Found at i:14830942 original size:24 final size:24
Alignment explanation
Indices: 14830866--14830943 Score: 66
Period size: 24 Copynumber: 3.2 Consensus size: 24
14830856 GTTGTTACAC
* * * *
14830866 ACCATATACAGAAACATGTGACAC
1 ACCATGTACAAAAACATGTAACAA
* * * *
14830890 GCCATGTACAGAAACATGTGACAT
1 ACCATGTACAAAAACATGTAACAA
* *
14830914 GCCATGTACAAAAACATTTAACAA
1 ACCATGTACAAAAACATGTAACAA
14830938 ACCATG
1 ACCATG
14830944 GTTAGGTTGT
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 46 1.00
ACGTcount: A:0.44, C:0.23, G:0.14, T:0.19
Consensus pattern (24 bp):
ACCATGTACAAAAACATGTAACAA
Found at i:14831013 original size:24 final size:24
Alignment explanation
Indices: 14830955--14831013 Score: 73
Period size: 24 Copynumber: 2.5 Consensus size: 24
14830945 TTAGGTTGTT
* *
14830955 ACACATCATATACAGAAACATGTG
1 ACACATCATGTACAGAAACATGTA
**
14830979 ACATGTCATGTACAGAAACATGTA
1 ACACATCATGTACAGAAACATGTA
*
14831003 ACACATAATGT
1 ACACATCATGT
14831014 CACGCCATGT
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.44, C:0.19, G:0.14, T:0.24
Consensus pattern (24 bp):
ACACATCATGTACAGAAACATGTA
Found at i:14831070 original size:24 final size:24
Alignment explanation
Indices: 14831014--14831063 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
14831004 CACATAATGT
14831014 CACGCCATGTACAAAAACATGTGA
1 CACGCCATGTACAAAAACATGTGA
14831038 CACGCCATGTACAAAAACATGTGA
1 CACGCCATGTACAAAAACATGTGA
14831062 CA
1 CA
14831064 TGTCATGGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.42, C:0.26, G:0.16, T:0.16
Consensus pattern (24 bp):
CACGCCATGTACAAAAACATGTGA
Found at i:14831106 original size:26 final size:26
Alignment explanation
Indices: 14831077--14831218 Score: 92
Period size: 26 Copynumber: 5.2 Consensus size: 26
14831067 CATGGTTAGG
*
14831077 TTATTACACGTCATGTTAAAAAAATA
1 TTATTACACGCCATGTTAAAAAAATA
* * * *
14831103 TTATTGTTACACGTCATG-TACACAAACA
1 TTA---TTACACGCCATGTTAAAAAAATA
*
14831131 -TATTACACGCCATGGTTAAAAAAA-G
1 TTATTACACGCCAT-GTTAAAAAAATA
*
14831156 TTATTACACGCCATATTGAAAAAAAATA
1 TTATTACACGCCATGTT--AAAAAAATA
* * *
14831184 TTGTTATTACATGCCATATTGAAAAAATA
1 ---TTATTACACGCCATGTTAAAAAAATA
14831213 TTATTA
1 TTATTA
14831219 TTACACTTCA
Statistics
Matches: 93, Mismatches: 11, Indels: 24
0.73 0.09 0.19
Matches are distributed among these distances:
24 10 0.11
25 3 0.03
26 28 0.30
27 9 0.10
28 7 0.08
29 20 0.22
31 16 0.17
ACGTcount: A:0.43, C:0.14, G:0.10, T:0.33
Consensus pattern (26 bp):
TTATTACACGCCATGTTAAAAAAATA
Found at i:14831208 original size:29 final size:30
Alignment explanation
Indices: 14831155--14831248 Score: 109
Period size: 29 Copynumber: 3.1 Consensus size: 30
14831145 GTTAAAAAAA
14831155 GTTATTACACGCCATATTGAAAAAAAATATT
1 GTTATTACACGCCATATTG-AAAAAAATATT
*
14831186 GTTATTACATGCCATATTG-AAAAAATATT
1 GTTATTACACGCCATATTGAAAAAAATATT
* ** * * *
14831215 ATTATTACACTTCATATTCAAAAACATTTT
1 GTTATTACACGCCATATTGAAAAAAATATT
14831245 GTTA
1 GTTA
14831249 CACTTTAATG
Statistics
Matches: 53, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
29 24 0.45
30 11 0.21
31 18 0.34
ACGTcount: A:0.41, C:0.13, G:0.07, T:0.38
Consensus pattern (30 bp):
GTTATTACACGCCATATTGAAAAAAATATT
Found at i:14836457 original size:54 final size:54
Alignment explanation
Indices: 14836375--14836483 Score: 218
Period size: 54 Copynumber: 2.0 Consensus size: 54
14836365 AGAGTTCGTT
14836375 AGCTTTTATTGAGGGGGCTAAAAATAGAAAAATAAGAGTTAAAAATTTTAAAAG
1 AGCTTTTATTGAGGGGGCTAAAAATAGAAAAATAAGAGTTAAAAATTTTAAAAG
14836429 AGCTTTTATTGAGGGGGCTAAAAATAGAAAAATAAGAGTTAAAAATTTTAAAAG
1 AGCTTTTATTGAGGGGGCTAAAAATAGAAAAATAAGAGTTAAAAATTTTAAAAG
14836483 A
1 A
14836484 TGATATGTTG
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.49, C:0.04, G:0.20, T:0.28
Consensus pattern (54 bp):
AGCTTTTATTGAGGGGGCTAAAAATAGAAAAATAAGAGTTAAAAATTTTAAAAG
Found at i:14838203 original size:127 final size:127
Alignment explanation
Indices: 14838052--14838306 Score: 458
Period size: 127 Copynumber: 2.0 Consensus size: 127
14838042 TATATATAAT
*
14838052 TATATTTAAATATATATATATCAAATTATGTAATTTTAATATATCCCATTGTCTAATTGTTTTTC
1 TATATTT-AATATATATATATCAAATTAGGTAATTTTAATATATCCCATTGTCTAATTGTTTTTC
14838117 CACATCTATAAGATTTCATTGTCTTCACTATTATTTGTAGATTTTTCAATGGGTTCTTTTCAA
65 CACATCTATAAGATTTCATTGTCTTCACTATTATTTGTAGATTTTTCAATGGGTTCTTTTCAA
* *
14838180 NTATATTT-ATATATATTTATCAAATTAGGTAATTTTACTATATCCCATTGTCTAATTGTTTTTC
1 -TATATTTAATATATATATATCAAATTAGGTAATTTTAATATATCCCATTGTCTAATTGTTTTTC
14838244 CACATCTATAAGATTTCATTGTCTTCACTATTATTTGTAGATTTTTCAATGGGTTCTTTTCAA
65 CACATCTATAAGATTTCATTGTCTTCACTATTATTTGTAGATTTTTCAATGGGTTCTTTTCAA
14838307 AAATACCCTT
Statistics
Matches: 123, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
127 116 0.94
129 7 0.06
ACGTcount: A:0.29, C:0.13, G:0.08, T:0.49
Consensus pattern (127 bp):
TATATTTAATATATATATATCAAATTAGGTAATTTTAATATATCCCATTGTCTAATTGTTTTTCC
ACATCTATAAGATTTCATTGTCTTCACTATTATTTGTAGATTTTTCAATGGGTTCTTTTCAA
Found at i:14838585 original size:51 final size:48
Alignment explanation
Indices: 14838507--14838649 Score: 124
Period size: 51 Copynumber: 2.8 Consensus size: 48
14838497 CTTTATCAGA
** *
14838507 AAGAAAAACCTTTAAGCGTTTTAAGCATTTTAAAGCAATTTTTAATACATG
1 AAGAAAAACCTTTAA-TATTTTGAGCATTTT-AAGC-ATTTTTAATACATG
* ** * *
14838558 AAGAAAAACCTTTGAATATTTTGAGCATTTTGGAGTGGTTTTTGATATATG
1 AAGAAAAACCTTT-AATATTTTGAGCATTTT-AAG-CATTTTTAATACATG
* * *
14838609 AAGAAAAACTTTTTAGTATTTTGAGTATTTTAAGCATTTTT
1 AAGAAAAAC-CTTTAATATTTTGAGCATTTTAAGCATTTTT
14838650 GAGTAGTTTT
Statistics
Matches: 74, Mismatches: 15, Indels: 8
0.76 0.15 0.08
Matches are distributed among these distances:
49 5 0.07
50 2 0.03
51 62 0.84
52 5 0.07
ACGTcount: A:0.36, C:0.08, G:0.15, T:0.41
Consensus pattern (48 bp):
AAGAAAAACCTTTAATATTTTGAGCATTTTAAGCATTTTTAATACATG
Done.