Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr8
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19593398
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 1222752 characters in sequence are not A, C, G, or T
File 47 of 50
Found at i:19137370 original size:64 final size:63
Alignment explanation
Indices: 19137243--19137384 Score: 155
Period size: 64 Copynumber: 2.2 Consensus size: 63
19137233 ATCATTTATA
* * *
19137243 TAAAATAGTAATAATTAATAATTTAAATATTAATATTTTATTTATAATTTAATCATTAATATTT
1 TAAAATATTAATAATTAATAAATTAAATATTAATATTTCATTTATAATTT-ATCATTAATATTT
* * *
19137307 TAAAATATTAATAATTTATATAAATTAAATATTAATATGATTCATTTTTCATTT-T-ATT-TTAT
1 TAAAATATTAATAA-TTA-ATAAATTAAATATTAATAT--TTCATTTATAATTTATCATTAATAT
19137369 TT
62 TT
*
19137371 TTAAATATTAATAA
1 TAAAATATTAATAA
19137385 ATGATCATTT
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
64 31 0.46
65 6 0.09
66 19 0.28
68 11 0.16
ACGTcount: A:0.45, C:0.02, G:0.01, T:0.51
Consensus pattern (63 bp):
TAAAATATTAATAATTAATAAATTAAATATTAATATTTCATTTATAATTTATCATTAATATTT
Found at i:19137431 original size:15 final size:15
Alignment explanation
Indices: 19137411--19137479 Score: 67
Period size: 15 Copynumber: 4.8 Consensus size: 15
19137401 AATAGTAATA
19137411 ATTAATAATTTAAAT
1 ATTAATAATTTAAAT
19137426 ATTAAT-ATTT---T
1 ATTAATAATTTAAAT
*
19137437 ATTTATAATTT-AAT
1 ATTAATAATTTAAAT
*
19137451 CATTAATATTTTAAAAT
1 -ATTAATAATTT-AAAT
19137468 ATTAATAATTTA
1 ATTAATAATTTA
19137480 TATAAATTAA
Statistics
Matches: 44, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
11 6 0.14
12 4 0.09
14 5 0.11
15 16 0.36
16 10 0.23
17 3 0.07
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.52
Consensus pattern (15 bp):
ATTAATAATTTAAAT
Found at i:19137440 original size:19 final size:19
Alignment explanation
Indices: 19137418--19137486 Score: 59
Period size: 19 Copynumber: 3.4 Consensus size: 19
19137408 ATAATTAATA
19137418 ATTTAAATATTAATATTTT
1 ATTTAAATATTAATATTTT
*
19137437 ATTTATAAT-TTAATCATTAAT
1 ATTTA-AATATTAAT-ATT-TT
*
19137458 ATTTTAAAATATTAATAATTT
1 A-TTT-AAATATTAATATTTT
*
19137479 ATATAAAT
1 ATTTAAAT
19137487 TAAATATTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 12
0.71 0.07 0.21
Matches are distributed among these distances:
19 14 0.35
20 8 0.20
21 4 0.10
22 8 0.20
23 6 0.15
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.52
Consensus pattern (19 bp):
ATTTAAATATTAATATTTT
Found at i:19137461 original size:91 final size:90
Alignment explanation
Indices: 19137307--19137475 Score: 209
Period size: 91 Copynumber: 1.9 Consensus size: 90
19137297 ATTAATATTT
* * * *
19137307 TAAAATATTAATAATTTATATAAATTAAATATTAATATGATTCATTTTTCATTTTATTTTATTTT
1 TAAAATAGTAATAATTTATATAAATTAAATATTAATAT-ATTCATTTATAATTTTATTATATTTT
*
19137372 TAAATATTAATAAATGATCATTTATA
65 AAAATATTAATAAATGATCATTTATA
* *
19137398 TAAAATAGTAATAA-TTA-ATAATTTAAATATTAATAT-TTTATTTATAATTTAATCATTAATAT
1 TAAAATAGTAATAATTTATATAAATTAAATATTAATATATTCATTTATAATTT--T-ATT-ATAT
19137460 TTTAAAATATTAATAA
62 TTTAAAATATTAATAA
19137476 TTTATATAAA
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
87 11 0.16
89 19 0.28
90 6 0.09
91 31 0.46
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (90 bp):
TAAAATAGTAATAATTTATATAAATTAAATATTAATATATTCATTTATAATTTTATTATATTTTA
AAATATTAATAAATGATCATTTATA
Found at i:19137525 original size:64 final size:63
Alignment explanation
Indices: 19137398--19137539 Score: 155
Period size: 64 Copynumber: 2.2 Consensus size: 63
19137388 ATCATTTATA
* * *
19137398 TAAAATAGTAATAATTAATAATTTAAATATTAATATTTTATTTATAATTTAATCATTAATATTT
1 TAAAATATTAATAATTAATAAATTAAATATTAATATTTCATTTATAATTT-ATCATTAATATTT
* * *
19137462 TAAAATATTAATAATTTATATAAATTAAATATTAATATGATTCATTTTTCATTT-T-ATT-TTAT
1 TAAAATATTAATAA-TTA-ATAAATTAAATATTAATAT--TTCATTTATAATTTATCATTAATAT
19137524 TT
62 TT
*
19137526 TTAAATATTAATAA
1 TAAAATATTAATAA
19137540 ATGATCATTT
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
64 31 0.46
65 6 0.09
66 19 0.28
68 11 0.16
ACGTcount: A:0.45, C:0.02, G:0.01, T:0.51
Consensus pattern (63 bp):
TAAAATATTAATAATTAATAAATTAAATATTAATATTTCATTTATAATTTATCATTAATATTT
Found at i:19137586 original size:15 final size:15
Alignment explanation
Indices: 19137566--19137634 Score: 67
Period size: 15 Copynumber: 4.8 Consensus size: 15
19137556 AATAGTAATA
19137566 ATTAATAATTTAAAT
1 ATTAATAATTTAAAT
19137581 ATTAAT-ATTT---T
1 ATTAATAATTTAAAT
*
19137592 ATTTATAATTT-AAT
1 ATTAATAATTTAAAT
*
19137606 CATTAATATTTTAAAAT
1 -ATTAATAATTT-AAAT
19137623 ATTAATAATTTA
1 ATTAATAATTTA
19137635 TATAAATTAA
Statistics
Matches: 44, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
11 6 0.14
12 4 0.09
14 5 0.11
15 16 0.36
16 10 0.23
17 3 0.07
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.52
Consensus pattern (15 bp):
ATTAATAATTTAAAT
Found at i:19137595 original size:19 final size:19
Alignment explanation
Indices: 19137573--19137641 Score: 59
Period size: 19 Copynumber: 3.4 Consensus size: 19
19137563 ATAATTAATA
19137573 ATTTAAATATTAATATTTT
1 ATTTAAATATTAATATTTT
*
19137592 ATTTATAAT-TTAATCATTAAT
1 ATTTA-AATATTAAT-ATT-TT
*
19137613 ATTTTAAAATATTAATAATTT
1 A-TTT-AAATATTAATATTTT
*
19137634 ATATAAAT
1 ATTTAAAT
19137642 TAAATATTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 12
0.71 0.07 0.21
Matches are distributed among these distances:
19 14 0.35
20 8 0.20
21 4 0.10
22 8 0.20
23 6 0.15
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.52
Consensus pattern (19 bp):
ATTTAAATATTAATATTTT
Found at i:19137616 original size:91 final size:90
Alignment explanation
Indices: 19137462--19137630 Score: 209
Period size: 91 Copynumber: 1.9 Consensus size: 90
19137452 ATTAATATTT
* * * *
19137462 TAAAATATTAATAATTTATATAAATTAAATATTAATATGATTCATTTTTCATTTTATTTTATTTT
1 TAAAATAGTAATAATTTATATAAATTAAATATTAATAT-ATTCATTTATAATTTTATTATATTTT
*
19137527 TAAATATTAATAAATGATCATTTATA
65 AAAATATTAATAAATGATCATTTATA
* *
19137553 TAAAATAGTAATAA-TTA-ATAATTTAAATATTAATAT-TTTATTTATAATTTAATCATTAATAT
1 TAAAATAGTAATAATTTATATAAATTAAATATTAATATATTCATTTATAATTT--T-ATT-ATAT
19137615 TTTAAAATATTAATAA
62 TTTAAAATATTAATAA
19137631 TTTATATAAA
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
87 11 0.16
89 19 0.28
90 6 0.09
91 31 0.46
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (90 bp):
TAAAATAGTAATAATTTATATAAATTAAATATTAATATATTCATTTATAATTTTATTATATTTTA
AAATATTAATAAATGATCATTTATA
Found at i:19137680 original size:64 final size:63
Alignment explanation
Indices: 19137553--19137694 Score: 155
Period size: 64 Copynumber: 2.2 Consensus size: 63
19137543 ATCATTTATA
* * *
19137553 TAAAATAGTAATAATTAATAATTTAAATATTAATATTTTATTTATAATTTAATCATTAATATTT
1 TAAAATATTAATAATTAATAAATTAAATATTAATATTTCATTTATAATTT-ATCATTAATATTT
* * *
19137617 TAAAATATTAATAATTTATATAAATTAAATATTAATATGATTCATTTTTCATTT-T-ATT-TTAT
1 TAAAATATTAATAA-TTA-ATAAATTAAATATTAATAT--TTCATTTATAATTTATCATTAATAT
19137679 TT
62 TT
*
19137681 TTAAATATTAATAA
1 TAAAATATTAATAA
19137695 ATGATCATTT
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
64 31 0.46
65 6 0.09
66 19 0.28
68 11 0.16
ACGTcount: A:0.45, C:0.02, G:0.01, T:0.51
Consensus pattern (63 bp):
TAAAATATTAATAATTAATAAATTAAATATTAATATTTCATTTATAATTTATCATTAATATTT
Found at i:19137741 original size:15 final size:15
Alignment explanation
Indices: 19137721--19137789 Score: 67
Period size: 15 Copynumber: 4.8 Consensus size: 15
19137711 AATAGTAATA
19137721 ATTAATAATTTAAAT
1 ATTAATAATTTAAAT
19137736 ATTAAT-ATTT---T
1 ATTAATAATTTAAAT
*
19137747 ATTTATAATTT-AAT
1 ATTAATAATTTAAAT
*
19137761 CATTAATATTTTAAAAT
1 -ATTAATAATTT-AAAT
19137778 ATTAATAATTTA
1 ATTAATAATTTA
19137790 TATAAATTAA
Statistics
Matches: 44, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
11 6 0.14
12 4 0.09
14 5 0.11
15 16 0.36
16 10 0.23
17 3 0.07
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.52
Consensus pattern (15 bp):
ATTAATAATTTAAAT
Found at i:19137750 original size:19 final size:19
Alignment explanation
Indices: 19137728--19137796 Score: 59
Period size: 19 Copynumber: 3.4 Consensus size: 19
19137718 ATAATTAATA
19137728 ATTTAAATATTAATATTTT
1 ATTTAAATATTAATATTTT
*
19137747 ATTTATAAT-TTAATCATTAAT
1 ATTTA-AATATTAAT-ATT-TT
*
19137768 ATTTTAAAATATTAATAATTT
1 A-TTT-AAATATTAATATTTT
*
19137789 ATATAAAT
1 ATTTAAAT
19137797 TAAATATTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 12
0.71 0.07 0.21
Matches are distributed among these distances:
19 14 0.35
20 8 0.20
21 4 0.10
22 8 0.20
23 6 0.15
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.52
Consensus pattern (19 bp):
ATTTAAATATTAATATTTT
Found at i:19137771 original size:91 final size:90
Alignment explanation
Indices: 19137617--19137785 Score: 209
Period size: 91 Copynumber: 1.9 Consensus size: 90
19137607 ATTAATATTT
* * * *
19137617 TAAAATATTAATAATTTATATAAATTAAATATTAATATGATTCATTTTTCATTTTATTTTATTTT
1 TAAAATAGTAATAATTTATATAAATTAAATATTAATAT-ATTCATTTATAATTTTATTATATTTT
*
19137682 TAAATATTAATAAATGATCATTTATA
65 AAAATATTAATAAATGATCATTTATA
* *
19137708 TAAAATAGTAATAA-TTA-ATAATTTAAATATTAATAT-TTTATTTATAATTTAATCATTAATAT
1 TAAAATAGTAATAATTTATATAAATTAAATATTAATATATTCATTTATAATTT--T-ATT-ATAT
19137770 TTTAAAATATTAATAA
62 TTTAAAATATTAATAA
19137786 TTTATATAAA
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
87 11 0.16
89 19 0.28
90 6 0.09
91 31 0.46
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (90 bp):
TAAAATAGTAATAATTTATATAAATTAAATATTAATATATTCATTTATAATTTTATTATATTTTA
AAATATTAATAAATGATCATTTATA
Found at i:19137835 original size:64 final size:63
Alignment explanation
Indices: 19137708--19137849 Score: 155
Period size: 64 Copynumber: 2.2 Consensus size: 63
19137698 ATCATTTATA
* * *
19137708 TAAAATAGTAATAATTAATAATTTAAATATTAATATTTTATTTATAATTTAATCATTAATATTT
1 TAAAATATTAATAATTAATAAATTAAATATTAATATTTCATTTATAATTT-ATCATTAATATTT
* * *
19137772 TAAAATATTAATAATTTATATAAATTAAATATTAATATGATTCATTTTTCATTT-T-ATT-TTAT
1 TAAAATATTAATAA-TTA-ATAAATTAAATATTAATAT--TTCATTTATAATTTATCATTAATAT
19137834 TT
62 TT
*
19137836 TTAAATATTAATAA
1 TAAAATATTAATAA
19137850 ATGATCATTT
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
64 31 0.46
65 6 0.09
66 19 0.28
68 11 0.16
ACGTcount: A:0.45, C:0.02, G:0.01, T:0.51
Consensus pattern (63 bp):
TAAAATATTAATAATTAATAAATTAAATATTAATATTTCATTTATAATTTATCATTAATATTT
Found at i:19137896 original size:15 final size:15
Alignment explanation
Indices: 19137876--19137944 Score: 67
Period size: 15 Copynumber: 4.8 Consensus size: 15
19137866 AATAGTAATA
19137876 ATTAATAATTTAAAT
1 ATTAATAATTTAAAT
19137891 ATTAAT-ATTT---T
1 ATTAATAATTTAAAT
*
19137902 ATTTATAATTT-AAT
1 ATTAATAATTTAAAT
*
19137916 CATTAATATTTTAAAAT
1 -ATTAATAATTT-AAAT
19137933 ATTAATAATTTA
1 ATTAATAATTTA
19137945 TATAAATTAA
Statistics
Matches: 44, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
11 6 0.14
12 4 0.09
14 5 0.11
15 16 0.36
16 10 0.23
17 3 0.07
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.52
Consensus pattern (15 bp):
ATTAATAATTTAAAT
Found at i:19137905 original size:19 final size:19
Alignment explanation
Indices: 19137883--19137951 Score: 59
Period size: 19 Copynumber: 3.4 Consensus size: 19
19137873 ATAATTAATA
19137883 ATTTAAATATTAATATTTT
1 ATTTAAATATTAATATTTT
*
19137902 ATTTATAAT-TTAATCATTAAT
1 ATTTA-AATATTAAT-ATT-TT
*
19137923 ATTTTAAAATATTAATAATTT
1 A-TTT-AAATATTAATATTTT
*
19137944 ATATAAAT
1 ATTTAAAT
19137952 TAAATATTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 12
0.71 0.07 0.21
Matches are distributed among these distances:
19 14 0.35
20 8 0.20
21 4 0.10
22 8 0.20
23 6 0.15
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.52
Consensus pattern (19 bp):
ATTTAAATATTAATATTTT
Found at i:19137926 original size:91 final size:90
Alignment explanation
Indices: 19137772--19137940 Score: 209
Period size: 91 Copynumber: 1.9 Consensus size: 90
19137762 ATTAATATTT
* * * *
19137772 TAAAATATTAATAATTTATATAAATTAAATATTAATATGATTCATTTTTCATTTTATTTTATTTT
1 TAAAATAGTAATAATTTATATAAATTAAATATTAATAT-ATTCATTTATAATTTTATTATATTTT
*
19137837 TAAATATTAATAAATGATCATTTATA
65 AAAATATTAATAAATGATCATTTATA
* *
19137863 TAAAATAGTAATAA-TTA-ATAATTTAAATATTAATAT-TTTATTTATAATTTAATCATTAATAT
1 TAAAATAGTAATAATTTATATAAATTAAATATTAATATATTCATTTATAATTT--T-ATT-ATAT
19137925 TTTAAAATATTAATAA
62 TTTAAAATATTAATAA
19137941 TTTATATAAA
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
87 11 0.16
89 19 0.28
90 6 0.09
91 31 0.46
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (90 bp):
TAAAATAGTAATAATTTATATAAATTAAATATTAATATATTCATTTATAATTTTATTATATTTTA
AAATATTAATAAATGATCATTTATA
Found at i:19137990 original size:64 final size:63
Alignment explanation
Indices: 19137863--19138004 Score: 155
Period size: 64 Copynumber: 2.2 Consensus size: 63
19137853 ATCATTTATA
* * *
19137863 TAAAATAGTAATAATTAATAATTTAAATATTAATATTTTATTTATAATTTAATCATTAATATTT
1 TAAAATATTAATAATTAATAAATTAAATATTAATATTTCATTTATAATTT-ATCATTAATATTT
* * *
19137927 TAAAATATTAATAATTTATATAAATTAAATATTAATATGATTCATTTTTCATTT-T-ATT-TTAT
1 TAAAATATTAATAA-TTA-ATAAATTAAATATTAATAT--TTCATTTATAATTTATCATTAATAT
19137989 TT
62 TT
*
19137991 TTAAATATTAATAA
1 TAAAATATTAATAA
19138005 ATGATCATTT
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
64 31 0.46
65 6 0.09
66 19 0.28
68 11 0.16
ACGTcount: A:0.45, C:0.02, G:0.01, T:0.51
Consensus pattern (63 bp):
TAAAATATTAATAATTAATAAATTAAATATTAATATTTCATTTATAATTTATCATTAATATTT
Found at i:19138051 original size:15 final size:15
Alignment explanation
Indices: 19138031--19138099 Score: 67
Period size: 15 Copynumber: 4.8 Consensus size: 15
19138021 AATAGTAATA
19138031 ATTAATAATTTAAAT
1 ATTAATAATTTAAAT
19138046 ATTAAT-ATTT---T
1 ATTAATAATTTAAAT
*
19138057 ATTTATAATTT-AAT
1 ATTAATAATTTAAAT
*
19138071 CATTAATATTTTAAAAT
1 -ATTAATAATTT-AAAT
19138088 ATTAATAATTTA
1 ATTAATAATTTA
19138100 TATAAATTAA
Statistics
Matches: 44, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
11 6 0.14
12 4 0.09
14 5 0.11
15 16 0.36
16 10 0.23
17 3 0.07
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.52
Consensus pattern (15 bp):
ATTAATAATTTAAAT
Found at i:19138060 original size:19 final size:19
Alignment explanation
Indices: 19138038--19138106 Score: 59
Period size: 19 Copynumber: 3.4 Consensus size: 19
19138028 ATAATTAATA
19138038 ATTTAAATATTAATATTTT
1 ATTTAAATATTAATATTTT
*
19138057 ATTTATAAT-TTAATCATTAAT
1 ATTTA-AATATTAAT-ATT-TT
*
19138078 ATTTTAAAATATTAATAATTT
1 A-TTT-AAATATTAATATTTT
*
19138099 ATATAAAT
1 ATTTAAAT
19138107 TAAATATTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 12
0.71 0.07 0.21
Matches are distributed among these distances:
19 14 0.35
20 8 0.20
21 4 0.10
22 8 0.20
23 6 0.15
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.52
Consensus pattern (19 bp):
ATTTAAATATTAATATTTT
Found at i:19138081 original size:91 final size:90
Alignment explanation
Indices: 19137927--19138095 Score: 209
Period size: 91 Copynumber: 1.9 Consensus size: 90
19137917 ATTAATATTT
* * * *
19137927 TAAAATATTAATAATTTATATAAATTAAATATTAATATGATTCATTTTTCATTTTATTTTATTTT
1 TAAAATAGTAATAATTTATATAAATTAAATATTAATAT-ATTCATTTATAATTTTATTATATTTT
*
19137992 TAAATATTAATAAATGATCATTTATA
65 AAAATATTAATAAATGATCATTTATA
* *
19138018 TAAAATAGTAATAA-TTA-ATAATTTAAATATTAATAT-TTTATTTATAATTTAATCATTAATAT
1 TAAAATAGTAATAATTTATATAAATTAAATATTAATATATTCATTTATAATTT--T-ATT-ATAT
19138080 TTTAAAATATTAATAA
62 TTTAAAATATTAATAA
19138096 TTTATATAAA
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
87 11 0.16
89 19 0.28
90 6 0.09
91 31 0.46
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (90 bp):
TAAAATAGTAATAATTTATATAAATTAAATATTAATATATTCATTTATAATTTTATTATATTTTA
AAATATTAATAAATGATCATTTATA
Found at i:19138145 original size:64 final size:63
Alignment explanation
Indices: 19138018--19138159 Score: 155
Period size: 64 Copynumber: 2.2 Consensus size: 63
19138008 ATCATTTATA
* * *
19138018 TAAAATAGTAATAATTAATAATTTAAATATTAATATTTTATTTATAATTTAATCATTAATATTT
1 TAAAATATTAATAATTAATAAATTAAATATTAATATTTCATTTATAATTT-ATCATTAATATTT
* * *
19138082 TAAAATATTAATAATTTATATAAATTAAATATTAATATGATTCATTTTTCATTT-T-ATT-TTAT
1 TAAAATATTAATAA-TTA-ATAAATTAAATATTAATAT--TTCATTTATAATTTATCATTAATAT
19138144 TT
62 TT
*
19138146 TTAAATATTAATAA
1 TAAAATATTAATAA
19138160 ATGATCATTT
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
64 31 0.46
65 6 0.09
66 19 0.28
68 11 0.16
ACGTcount: A:0.45, C:0.02, G:0.01, T:0.51
Consensus pattern (63 bp):
TAAAATATTAATAATTAATAAATTAAATATTAATATTTCATTTATAATTTATCATTAATATTT
Found at i:19138206 original size:15 final size:15
Alignment explanation
Indices: 19138186--19138254 Score: 67
Period size: 15 Copynumber: 4.8 Consensus size: 15
19138176 AATAGTAATA
19138186 ATTAATAATTTAAAT
1 ATTAATAATTTAAAT
19138201 ATTAAT-ATTT---T
1 ATTAATAATTTAAAT
*
19138212 ATTTATAATTT-AAT
1 ATTAATAATTTAAAT
*
19138226 CATTAATATTTTAAAAT
1 -ATTAATAATTT-AAAT
19138243 ATTAATAATTTA
1 ATTAATAATTTA
19138255 TATAAATTAA
Statistics
Matches: 44, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
11 6 0.14
12 4 0.09
14 5 0.11
15 16 0.36
16 10 0.23
17 3 0.07
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.52
Consensus pattern (15 bp):
ATTAATAATTTAAAT
Found at i:19138215 original size:19 final size:19
Alignment explanation
Indices: 19138193--19138261 Score: 59
Period size: 19 Copynumber: 3.4 Consensus size: 19
19138183 ATAATTAATA
19138193 ATTTAAATATTAATATTTT
1 ATTTAAATATTAATATTTT
*
19138212 ATTTATAAT-TTAATCATTAAT
1 ATTTA-AATATTAAT-ATT-TT
*
19138233 ATTTTAAAATATTAATAATTT
1 A-TTT-AAATATTAATATTTT
*
19138254 ATATAAAT
1 ATTTAAAT
19138262 TAAATATTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 12
0.71 0.07 0.21
Matches are distributed among these distances:
19 14 0.35
20 8 0.20
21 4 0.10
22 8 0.20
23 6 0.15
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.52
Consensus pattern (19 bp):
ATTTAAATATTAATATTTT
Found at i:19138236 original size:91 final size:90
Alignment explanation
Indices: 19138082--19138250 Score: 209
Period size: 91 Copynumber: 1.9 Consensus size: 90
19138072 ATTAATATTT
* * * *
19138082 TAAAATATTAATAATTTATATAAATTAAATATTAATATGATTCATTTTTCATTTTATTTTATTTT
1 TAAAATAGTAATAATTTATATAAATTAAATATTAATAT-ATTCATTTATAATTTTATTATATTTT
*
19138147 TAAATATTAATAAATGATCATTTATA
65 AAAATATTAATAAATGATCATTTATA
* *
19138173 TAAAATAGTAATAA-TTA-ATAATTTAAATATTAATAT-TTTATTTATAATTTAATCATTAATAT
1 TAAAATAGTAATAATTTATATAAATTAAATATTAATATATTCATTTATAATTT--T-ATT-ATAT
19138235 TTTAAAATATTAATAA
62 TTTAAAATATTAATAA
19138251 TTTATATAAA
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
87 11 0.16
89 19 0.28
90 6 0.09
91 31 0.46
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (90 bp):
TAAAATAGTAATAATTTATATAAATTAAATATTAATATATTCATTTATAATTTTATTATATTTTA
AAATATTAATAAATGATCATTTATA
Found at i:19138300 original size:64 final size:63
Alignment explanation
Indices: 19138173--19138314 Score: 155
Period size: 64 Copynumber: 2.2 Consensus size: 63
19138163 ATCATTTATA
* * *
19138173 TAAAATAGTAATAATTAATAATTTAAATATTAATATTTTATTTATAATTTAATCATTAATATTT
1 TAAAATATTAATAATTAATAAATTAAATATTAATATTTCATTTATAATTT-ATCATTAATATTT
* * *
19138237 TAAAATATTAATAATTTATATAAATTAAATATTAATATGATTCATTTTTCATTT-T-ATT-TTAT
1 TAAAATATTAATAA-TTA-ATAAATTAAATATTAATAT--TTCATTTATAATTTATCATTAATAT
19138299 TT
62 TT
*
19138301 TTAAATATTAATAA
1 TAAAATATTAATAA
19138315 ATGATCATTT
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
64 31 0.46
65 6 0.09
66 19 0.28
68 11 0.16
ACGTcount: A:0.45, C:0.02, G:0.01, T:0.51
Consensus pattern (63 bp):
TAAAATATTAATAATTAATAAATTAAATATTAATATTTCATTTATAATTTATCATTAATATTT
Found at i:19138361 original size:15 final size:15
Alignment explanation
Indices: 19138341--19138409 Score: 67
Period size: 15 Copynumber: 4.8 Consensus size: 15
19138331 AATAGTAATA
19138341 ATTAATAATTTAAAT
1 ATTAATAATTTAAAT
19138356 ATTAAT-ATTT---T
1 ATTAATAATTTAAAT
*
19138367 ATTTATAATTT-AAT
1 ATTAATAATTTAAAT
*
19138381 CATTAATATTTTAAAAT
1 -ATTAATAATTT-AAAT
19138398 ATTAATAATTTA
1 ATTAATAATTTA
19138410 TATAAATTAA
Statistics
Matches: 44, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
11 6 0.14
12 4 0.09
14 5 0.11
15 16 0.36
16 10 0.23
17 3 0.07
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.52
Consensus pattern (15 bp):
ATTAATAATTTAAAT
Found at i:19138370 original size:19 final size:19
Alignment explanation
Indices: 19138348--19138416 Score: 59
Period size: 19 Copynumber: 3.4 Consensus size: 19
19138338 ATAATTAATA
19138348 ATTTAAATATTAATATTTT
1 ATTTAAATATTAATATTTT
*
19138367 ATTTATAAT-TTAATCATTAAT
1 ATTTA-AATATTAAT-ATT-TT
*
19138388 ATTTTAAAATATTAATAATTT
1 A-TTT-AAATATTAATATTTT
*
19138409 ATATAAAT
1 ATTTAAAT
19138417 TAAATATTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 12
0.71 0.07 0.21
Matches are distributed among these distances:
19 14 0.35
20 8 0.20
21 4 0.10
22 8 0.20
23 6 0.15
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.52
Consensus pattern (19 bp):
ATTTAAATATTAATATTTT
Found at i:19138391 original size:91 final size:90
Alignment explanation
Indices: 19138237--19138405 Score: 209
Period size: 91 Copynumber: 1.9 Consensus size: 90
19138227 ATTAATATTT
* * * *
19138237 TAAAATATTAATAATTTATATAAATTAAATATTAATATGATTCATTTTTCATTTTATTTTATTTT
1 TAAAATAGTAATAATTTATATAAATTAAATATTAATAT-ATTCATTTATAATTTTATTATATTTT
*
19138302 TAAATATTAATAAATGATCATTTATA
65 AAAATATTAATAAATGATCATTTATA
* *
19138328 TAAAATAGTAATAA-TTA-ATAATTTAAATATTAATAT-TTTATTTATAATTTAATCATTAATAT
1 TAAAATAGTAATAATTTATATAAATTAAATATTAATATATTCATTTATAATTT--T-ATT-ATAT
19138390 TTTAAAATATTAATAA
62 TTTAAAATATTAATAA
19138406 TTTATATAAA
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
87 11 0.16
89 19 0.28
90 6 0.09
91 31 0.46
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (90 bp):
TAAAATAGTAATAATTTATATAAATTAAATATTAATATATTCATTTATAATTTTATTATATTTTA
AAATATTAATAAATGATCATTTATA
Found at i:19138455 original size:64 final size:63
Alignment explanation
Indices: 19138328--19138469 Score: 155
Period size: 64 Copynumber: 2.2 Consensus size: 63
19138318 ATCATTTATA
* * *
19138328 TAAAATAGTAATAATTAATAATTTAAATATTAATATTTTATTTATAATTTAATCATTAATATTT
1 TAAAATATTAATAATTAATAAATTAAATATTAATATTTCATTTATAATTT-ATCATTAATATTT
* * *
19138392 TAAAATATTAATAATTTATATAAATTAAATATTAATATGATTCATTTTTCATTT-T-ATT-TTAT
1 TAAAATATTAATAA-TTA-ATAAATTAAATATTAATAT--TTCATTTATAATTTATCATTAATAT
19138454 TT
62 TT
*
19138456 TTAAATATTAATAA
1 TAAAATATTAATAA
19138470 ATGATCATTT
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
64 31 0.46
65 6 0.09
66 19 0.28
68 11 0.16
ACGTcount: A:0.45, C:0.02, G:0.01, T:0.51
Consensus pattern (63 bp):
TAAAATATTAATAATTAATAAATTAAATATTAATATTTCATTTATAATTTATCATTAATATTT
Found at i:19138516 original size:15 final size:15
Alignment explanation
Indices: 19138496--19138564 Score: 67
Period size: 15 Copynumber: 4.8 Consensus size: 15
19138486 AATAGTAATA
19138496 ATTAATAATTTAAAT
1 ATTAATAATTTAAAT
19138511 ATTAAT-ATTT---T
1 ATTAATAATTTAAAT
*
19138522 ATTTATAATTT-AAT
1 ATTAATAATTTAAAT
*
19138536 CATTAATATTTTAAAAT
1 -ATTAATAATTT-AAAT
19138553 ATTAATAATTTA
1 ATTAATAATTTA
19138565 TATAAATTAA
Statistics
Matches: 44, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
11 6 0.14
12 4 0.09
14 5 0.11
15 16 0.36
16 10 0.23
17 3 0.07
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.52
Consensus pattern (15 bp):
ATTAATAATTTAAAT
Found at i:19138525 original size:19 final size:19
Alignment explanation
Indices: 19138503--19138571 Score: 59
Period size: 19 Copynumber: 3.4 Consensus size: 19
19138493 ATAATTAATA
19138503 ATTTAAATATTAATATTTT
1 ATTTAAATATTAATATTTT
*
19138522 ATTTATAAT-TTAATCATTAAT
1 ATTTA-AATATTAAT-ATT-TT
*
19138543 ATTTTAAAATATTAATAATTT
1 A-TTT-AAATATTAATATTTT
*
19138564 ATATAAAT
1 ATTTAAAT
19138572 TAAATATTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 12
0.71 0.07 0.21
Matches are distributed among these distances:
19 14 0.35
20 8 0.20
21 4 0.10
22 8 0.20
23 6 0.15
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.52
Consensus pattern (19 bp):
ATTTAAATATTAATATTTT
Found at i:19138546 original size:91 final size:90
Alignment explanation
Indices: 19138392--19138560 Score: 209
Period size: 91 Copynumber: 1.9 Consensus size: 90
19138382 ATTAATATTT
* * * *
19138392 TAAAATATTAATAATTTATATAAATTAAATATTAATATGATTCATTTTTCATTTTATTTTATTTT
1 TAAAATAGTAATAATTTATATAAATTAAATATTAATAT-ATTCATTTATAATTTTATTATATTTT
*
19138457 TAAATATTAATAAATGATCATTTATA
65 AAAATATTAATAAATGATCATTTATA
* *
19138483 TAAAATAGTAATAA-TTA-ATAATTTAAATATTAATAT-TTTATTTATAATTTAATCATTAATAT
1 TAAAATAGTAATAATTTATATAAATTAAATATTAATATATTCATTTATAATTT--T-ATT-ATAT
19138545 TTTAAAATATTAATAA
62 TTTAAAATATTAATAA
19138561 TTTATATAAA
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
87 11 0.16
89 19 0.28
90 6 0.09
91 31 0.46
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (90 bp):
TAAAATAGTAATAATTTATATAAATTAAATATTAATATATTCATTTATAATTTTATTATATTTTA
AAATATTAATAAATGATCATTTATA
Found at i:19138610 original size:64 final size:63
Alignment explanation
Indices: 19138483--19138624 Score: 155
Period size: 64 Copynumber: 2.2 Consensus size: 63
19138473 ATCATTTATA
* * *
19138483 TAAAATAGTAATAATTAATAATTTAAATATTAATATTTTATTTATAATTTAATCATTAATATTT
1 TAAAATATTAATAATTAATAAATTAAATATTAATATTTCATTTATAATTT-ATCATTAATATTT
* * *
19138547 TAAAATATTAATAATTTATATAAATTAAATATTAATATGATTCATTTTTCATTT-T-ATT-TTAT
1 TAAAATATTAATAA-TTA-ATAAATTAAATATTAATAT--TTCATTTATAATTTATCATTAATAT
19138609 TT
62 TT
*
19138611 TTAAATATTAATAA
1 TAAAATATTAATAA
19138625 ATGATCATTT
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
64 31 0.46
65 6 0.09
66 19 0.28
68 11 0.16
ACGTcount: A:0.45, C:0.02, G:0.01, T:0.51
Consensus pattern (63 bp):
TAAAATATTAATAATTAATAAATTAAATATTAATATTTCATTTATAATTTATCATTAATATTT
Found at i:19138671 original size:15 final size:15
Alignment explanation
Indices: 19138651--19138719 Score: 67
Period size: 15 Copynumber: 4.8 Consensus size: 15
19138641 AATAGTAATA
19138651 ATTAATAATTTAAAT
1 ATTAATAATTTAAAT
19138666 ATTAAT-ATTT---T
1 ATTAATAATTTAAAT
*
19138677 ATTTATAATTT-AAT
1 ATTAATAATTTAAAT
*
19138691 CATTAATATTTTAAAAT
1 -ATTAATAATTT-AAAT
19138708 ATTAATAATTTA
1 ATTAATAATTTA
19138720 TATAAATTAA
Statistics
Matches: 44, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
11 6 0.14
12 4 0.09
14 5 0.11
15 16 0.36
16 10 0.23
17 3 0.07
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.52
Consensus pattern (15 bp):
ATTAATAATTTAAAT
Found at i:19138680 original size:19 final size:19
Alignment explanation
Indices: 19138658--19138726 Score: 59
Period size: 19 Copynumber: 3.4 Consensus size: 19
19138648 ATAATTAATA
19138658 ATTTAAATATTAATATTTT
1 ATTTAAATATTAATATTTT
*
19138677 ATTTATAAT-TTAATCATTAAT
1 ATTTA-AATATTAAT-ATT-TT
*
19138698 ATTTTAAAATATTAATAATTT
1 A-TTT-AAATATTAATATTTT
*
19138719 ATATAAAT
1 ATTTAAAT
19138727 TAAATATTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 12
0.71 0.07 0.21
Matches are distributed among these distances:
19 14 0.35
20 8 0.20
21 4 0.10
22 8 0.20
23 6 0.15
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.52
Consensus pattern (19 bp):
ATTTAAATATTAATATTTT
Found at i:19138701 original size:91 final size:90
Alignment explanation
Indices: 19138547--19138715 Score: 209
Period size: 91 Copynumber: 1.9 Consensus size: 90
19138537 ATTAATATTT
* * * *
19138547 TAAAATATTAATAATTTATATAAATTAAATATTAATATGATTCATTTTTCATTTTATTTTATTTT
1 TAAAATAGTAATAATTTATATAAATTAAATATTAATAT-ATTCATTTATAATTTTATTATATTTT
*
19138612 TAAATATTAATAAATGATCATTTATA
65 AAAATATTAATAAATGATCATTTATA
* *
19138638 TAAAATAGTAATAA-TTA-ATAATTTAAATATTAATAT-TTTATTTATAATTTAATCATTAATAT
1 TAAAATAGTAATAATTTATATAAATTAAATATTAATATATTCATTTATAATTT--T-ATT-ATAT
19138700 TTTAAAATATTAATAA
62 TTTAAAATATTAATAA
19138716 TTTATATAAA
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
87 11 0.16
89 19 0.28
90 6 0.09
91 31 0.46
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (90 bp):
TAAAATAGTAATAATTTATATAAATTAAATATTAATATATTCATTTATAATTTTATTATATTTTA
AAATATTAATAAATGATCATTTATA
Found at i:19138765 original size:64 final size:63
Alignment explanation
Indices: 19138638--19138779 Score: 155
Period size: 64 Copynumber: 2.2 Consensus size: 63
19138628 ATCATTTATA
* * *
19138638 TAAAATAGTAATAATTAATAATTTAAATATTAATATTTTATTTATAATTTAATCATTAATATTT
1 TAAAATATTAATAATTAATAAATTAAATATTAATATTTCATTTATAATTT-ATCATTAATATTT
* * *
19138702 TAAAATATTAATAATTTATATAAATTAAATATTAATATGATTCATTTTTCATTT-T-ATT-TTAT
1 TAAAATATTAATAA-TTA-ATAAATTAAATATTAATAT--TTCATTTATAATTTATCATTAATAT
19138764 TT
62 TT
*
19138766 TTAAATATTAATAA
1 TAAAATATTAATAA
19138780 ATGATCATTT
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
64 31 0.46
65 6 0.09
66 19 0.28
68 11 0.16
ACGTcount: A:0.45, C:0.02, G:0.01, T:0.51
Consensus pattern (63 bp):
TAAAATATTAATAATTAATAAATTAAATATTAATATTTCATTTATAATTTATCATTAATATTT
Found at i:19138826 original size:15 final size:15
Alignment explanation
Indices: 19138806--19138874 Score: 67
Period size: 15 Copynumber: 4.8 Consensus size: 15
19138796 AATAGTAATA
19138806 ATTAATAATTTAAAT
1 ATTAATAATTTAAAT
19138821 ATTAAT-ATTT---T
1 ATTAATAATTTAAAT
*
19138832 ATTTATAATTT-AAT
1 ATTAATAATTTAAAT
*
19138846 CATTAATATTTTAAAAT
1 -ATTAATAATTT-AAAT
19138863 ATTAATAATTTA
1 ATTAATAATTTA
19138875 TATAAATTAA
Statistics
Matches: 44, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
11 6 0.14
12 4 0.09
14 5 0.11
15 16 0.36
16 10 0.23
17 3 0.07
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.52
Consensus pattern (15 bp):
ATTAATAATTTAAAT
Found at i:19138835 original size:19 final size:19
Alignment explanation
Indices: 19138813--19138881 Score: 59
Period size: 19 Copynumber: 3.4 Consensus size: 19
19138803 ATAATTAATA
19138813 ATTTAAATATTAATATTTT
1 ATTTAAATATTAATATTTT
*
19138832 ATTTATAAT-TTAATCATTAAT
1 ATTTA-AATATTAAT-ATT-TT
*
19138853 ATTTTAAAATATTAATAATTT
1 A-TTT-AAATATTAATATTTT
*
19138874 ATATAAAT
1 ATTTAAAT
19138882 TAAATATTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 12
0.71 0.07 0.21
Matches are distributed among these distances:
19 14 0.35
20 8 0.20
21 4 0.10
22 8 0.20
23 6 0.15
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.52
Consensus pattern (19 bp):
ATTTAAATATTAATATTTT
Found at i:19138856 original size:91 final size:90
Alignment explanation
Indices: 19138702--19138870 Score: 209
Period size: 91 Copynumber: 1.9 Consensus size: 90
19138692 ATTAATATTT
* * * *
19138702 TAAAATATTAATAATTTATATAAATTAAATATTAATATGATTCATTTTTCATTTTATTTTATTTT
1 TAAAATAGTAATAATTTATATAAATTAAATATTAATAT-ATTCATTTATAATTTTATTATATTTT
*
19138767 TAAATATTAATAAATGATCATTTATA
65 AAAATATTAATAAATGATCATTTATA
* *
19138793 TAAAATAGTAATAA-TTA-ATAATTTAAATATTAATAT-TTTATTTATAATTTAATCATTAATAT
1 TAAAATAGTAATAATTTATATAAATTAAATATTAATATATTCATTTATAATTT--T-ATT-ATAT
19138855 TTTAAAATATTAATAA
62 TTTAAAATATTAATAA
19138871 TTTATATAAA
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
87 11 0.16
89 19 0.28
90 6 0.09
91 31 0.46
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (90 bp):
TAAAATAGTAATAATTTATATAAATTAAATATTAATATATTCATTTATAATTTTATTATATTTTA
AAATATTAATAAATGATCATTTATA
Found at i:19138920 original size:64 final size:63
Alignment explanation
Indices: 19138793--19138934 Score: 155
Period size: 64 Copynumber: 2.2 Consensus size: 63
19138783 ATCATTTATA
* * *
19138793 TAAAATAGTAATAATTAATAATTTAAATATTAATATTTTATTTATAATTTAATCATTAATATTT
1 TAAAATATTAATAATTAATAAATTAAATATTAATATTTCATTTATAATTT-ATCATTAATATTT
* * *
19138857 TAAAATATTAATAATTTATATAAATTAAATATTAATATGATTCATTTTTCATTT-T-ATT-TTAT
1 TAAAATATTAATAA-TTA-ATAAATTAAATATTAATAT--TTCATTTATAATTTATCATTAATAT
19138919 TT
62 TT
*
19138921 TTAAATATTAATAA
1 TAAAATATTAATAA
19138935 ATGATCATTT
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
64 31 0.46
65 6 0.09
66 19 0.28
68 11 0.16
ACGTcount: A:0.45, C:0.02, G:0.01, T:0.51
Consensus pattern (63 bp):
TAAAATATTAATAATTAATAAATTAAATATTAATATTTCATTTATAATTTATCATTAATATTT
Found at i:19138981 original size:15 final size:15
Alignment explanation
Indices: 19138961--19139029 Score: 67
Period size: 15 Copynumber: 4.8 Consensus size: 15
19138951 AATAGTAATA
19138961 ATTAATAATTTAAAT
1 ATTAATAATTTAAAT
19138976 ATTAAT-ATTT---T
1 ATTAATAATTTAAAT
*
19138987 ATTTATAATTT-AAT
1 ATTAATAATTTAAAT
*
19139001 CATTAATATTTTAAAAT
1 -ATTAATAATTT-AAAT
19139018 ATTAATAATTTA
1 ATTAATAATTTA
19139030 TATAAATTAA
Statistics
Matches: 44, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
11 6 0.14
12 4 0.09
14 5 0.11
15 16 0.36
16 10 0.23
17 3 0.07
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.52
Consensus pattern (15 bp):
ATTAATAATTTAAAT
Found at i:19138990 original size:19 final size:19
Alignment explanation
Indices: 19138968--19139036 Score: 59
Period size: 19 Copynumber: 3.4 Consensus size: 19
19138958 ATAATTAATA
19138968 ATTTAAATATTAATATTTT
1 ATTTAAATATTAATATTTT
*
19138987 ATTTATAAT-TTAATCATTAAT
1 ATTTA-AATATTAAT-ATT-TT
*
19139008 ATTTTAAAATATTAATAATTT
1 A-TTT-AAATATTAATATTTT
*
19139029 ATATAAAT
1 ATTTAAAT
19139037 TAAATATTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 12
0.71 0.07 0.21
Matches are distributed among these distances:
19 14 0.35
20 8 0.20
21 4 0.10
22 8 0.20
23 6 0.15
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.52
Consensus pattern (19 bp):
ATTTAAATATTAATATTTT
Found at i:19139011 original size:91 final size:90
Alignment explanation
Indices: 19138857--19139025 Score: 209
Period size: 91 Copynumber: 1.9 Consensus size: 90
19138847 ATTAATATTT
* * * *
19138857 TAAAATATTAATAATTTATATAAATTAAATATTAATATGATTCATTTTTCATTTTATTTTATTTT
1 TAAAATAGTAATAATTTATATAAATTAAATATTAATAT-ATTCATTTATAATTTTATTATATTTT
*
19138922 TAAATATTAATAAATGATCATTTATA
65 AAAATATTAATAAATGATCATTTATA
* *
19138948 TAAAATAGTAATAA-TTA-ATAATTTAAATATTAATAT-TTTATTTATAATTTAATCATTAATAT
1 TAAAATAGTAATAATTTATATAAATTAAATATTAATATATTCATTTATAATTT--T-ATT-ATAT
19139010 TTTAAAATATTAATAA
62 TTTAAAATATTAATAA
19139026 TTTATATAAA
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
87 11 0.16
89 19 0.28
90 6 0.09
91 31 0.46
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (90 bp):
TAAAATAGTAATAATTTATATAAATTAAATATTAATATATTCATTTATAATTTTATTATATTTTA
AAATATTAATAAATGATCATTTATA
Found at i:19139075 original size:64 final size:63
Alignment explanation
Indices: 19138948--19139089 Score: 155
Period size: 64 Copynumber: 2.2 Consensus size: 63
19138938 ATCATTTATA
* * *
19138948 TAAAATAGTAATAATTAATAATTTAAATATTAATATTTTATTTATAATTTAATCATTAATATTT
1 TAAAATATTAATAATTAATAAATTAAATATTAATATTTCATTTATAATTT-ATCATTAATATTT
* * *
19139012 TAAAATATTAATAATTTATATAAATTAAATATTAATATGATTCATTTTTCATTT-T-ATT-TTAT
1 TAAAATATTAATAA-TTA-ATAAATTAAATATTAATAT--TTCATTTATAATTTATCATTAATAT
19139074 TT
62 TT
*
19139076 TTAAATATTAATAA
1 TAAAATATTAATAA
19139090 ATGATCATTT
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
64 31 0.46
65 6 0.09
66 19 0.28
68 11 0.16
ACGTcount: A:0.45, C:0.02, G:0.01, T:0.51
Consensus pattern (63 bp):
TAAAATATTAATAATTAATAAATTAAATATTAATATTTCATTTATAATTTATCATTAATATTT
Found at i:19139136 original size:15 final size:15
Alignment explanation
Indices: 19139116--19139184 Score: 67
Period size: 15 Copynumber: 4.8 Consensus size: 15
19139106 AATAGTAATA
19139116 ATTAATAATTTAAAT
1 ATTAATAATTTAAAT
19139131 ATTAAT-ATTT---T
1 ATTAATAATTTAAAT
*
19139142 ATTTATAATTT-AAT
1 ATTAATAATTTAAAT
*
19139156 CATTAATATTTTAAAAT
1 -ATTAATAATTT-AAAT
19139173 ATTAATAATTTA
1 ATTAATAATTTA
19139185 TATAAATTAA
Statistics
Matches: 44, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
11 6 0.14
12 4 0.09
14 5 0.11
15 16 0.36
16 10 0.23
17 3 0.07
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.52
Consensus pattern (15 bp):
ATTAATAATTTAAAT
Found at i:19139145 original size:19 final size:19
Alignment explanation
Indices: 19139123--19139191 Score: 59
Period size: 19 Copynumber: 3.4 Consensus size: 19
19139113 ATAATTAATA
19139123 ATTTAAATATTAATATTTT
1 ATTTAAATATTAATATTTT
*
19139142 ATTTATAAT-TTAATCATTAAT
1 ATTTA-AATATTAAT-ATT-TT
*
19139163 ATTTTAAAATATTAATAATTT
1 A-TTT-AAATATTAATATTTT
*
19139184 ATATAAAT
1 ATTTAAAT
19139192 TAAATATTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 12
0.71 0.07 0.21
Matches are distributed among these distances:
19 14 0.35
20 8 0.20
21 4 0.10
22 8 0.20
23 6 0.15
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.52
Consensus pattern (19 bp):
ATTTAAATATTAATATTTT
Found at i:19139166 original size:91 final size:90
Alignment explanation
Indices: 19139012--19139180 Score: 209
Period size: 91 Copynumber: 1.9 Consensus size: 90
19139002 ATTAATATTT
* * * *
19139012 TAAAATATTAATAATTTATATAAATTAAATATTAATATGATTCATTTTTCATTTTATTTTATTTT
1 TAAAATAGTAATAATTTATATAAATTAAATATTAATAT-ATTCATTTATAATTTTATTATATTTT
*
19139077 TAAATATTAATAAATGATCATTTATA
65 AAAATATTAATAAATGATCATTTATA
* *
19139103 TAAAATAGTAATAA-TTA-ATAATTTAAATATTAATAT-TTTATTTATAATTTAATCATTAATAT
1 TAAAATAGTAATAATTTATATAAATTAAATATTAATATATTCATTTATAATTT--T-ATT-ATAT
19139165 TTTAAAATATTAATAA
62 TTTAAAATATTAATAA
19139181 TTTATATAAA
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
87 11 0.16
89 19 0.28
90 6 0.09
91 31 0.46
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (90 bp):
TAAAATAGTAATAATTTATATAAATTAAATATTAATATATTCATTTATAATTTTATTATATTTTA
AAATATTAATAAATGATCATTTATA
Found at i:19139230 original size:64 final size:63
Alignment explanation
Indices: 19139103--19139244 Score: 155
Period size: 64 Copynumber: 2.2 Consensus size: 63
19139093 ATCATTTATA
* * *
19139103 TAAAATAGTAATAATTAATAATTTAAATATTAATATTTTATTTATAATTTAATCATTAATATTT
1 TAAAATATTAATAATTAATAAATTAAATATTAATATTTCATTTATAATTT-ATCATTAATATTT
* * *
19139167 TAAAATATTAATAATTTATATAAATTAAATATTAATATGATTCATTTTTCATTT-T-ATT-TTAT
1 TAAAATATTAATAA-TTA-ATAAATTAAATATTAATAT--TTCATTTATAATTTATCATTAATAT
19139229 TT
62 TT
*
19139231 TTAAATATTAATAA
1 TAAAATATTAATAA
19139245 ATGATCATTT
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
64 31 0.46
65 6 0.09
66 19 0.28
68 11 0.16
ACGTcount: A:0.45, C:0.02, G:0.01, T:0.51
Consensus pattern (63 bp):
TAAAATATTAATAATTAATAAATTAAATATTAATATTTCATTTATAATTTATCATTAATATTT
Found at i:19139291 original size:15 final size:15
Alignment explanation
Indices: 19139271--19139339 Score: 67
Period size: 15 Copynumber: 4.8 Consensus size: 15
19139261 AATAGTAATA
19139271 ATTAATAATTTAAAT
1 ATTAATAATTTAAAT
19139286 ATTAAT-ATTT---T
1 ATTAATAATTTAAAT
*
19139297 ATTTATAATTT-AAT
1 ATTAATAATTTAAAT
*
19139311 CATTAATATTTTAAAAT
1 -ATTAATAATTT-AAAT
19139328 ATTAATAATTTA
1 ATTAATAATTTA
19139340 TATAAATTAA
Statistics
Matches: 44, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
11 6 0.14
12 4 0.09
14 5 0.11
15 16 0.36
16 10 0.23
17 3 0.07
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.52
Consensus pattern (15 bp):
ATTAATAATTTAAAT
Found at i:19139300 original size:19 final size:19
Alignment explanation
Indices: 19139278--19139346 Score: 59
Period size: 19 Copynumber: 3.4 Consensus size: 19
19139268 ATAATTAATA
19139278 ATTTAAATATTAATATTTT
1 ATTTAAATATTAATATTTT
*
19139297 ATTTATAAT-TTAATCATTAAT
1 ATTTA-AATATTAAT-ATT-TT
*
19139318 ATTTTAAAATATTAATAATTT
1 A-TTT-AAATATTAATATTTT
*
19139339 ATATAAAT
1 ATTTAAAT
19139347 TAAATATTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 12
0.71 0.07 0.21
Matches are distributed among these distances:
19 14 0.35
20 8 0.20
21 4 0.10
22 8 0.20
23 6 0.15
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.52
Consensus pattern (19 bp):
ATTTAAATATTAATATTTT
Found at i:19139321 original size:91 final size:90
Alignment explanation
Indices: 19139167--19139335 Score: 209
Period size: 91 Copynumber: 1.9 Consensus size: 90
19139157 ATTAATATTT
* * * *
19139167 TAAAATATTAATAATTTATATAAATTAAATATTAATATGATTCATTTTTCATTTTATTTTATTTT
1 TAAAATAGTAATAATTTATATAAATTAAATATTAATAT-ATTCATTTATAATTTTATTATATTTT
*
19139232 TAAATATTAATAAATGATCATTTATA
65 AAAATATTAATAAATGATCATTTATA
* *
19139258 TAAAATAGTAATAA-TTA-ATAATTTAAATATTAATAT-TTTATTTATAATTTAATCATTAATAT
1 TAAAATAGTAATAATTTATATAAATTAAATATTAATATATTCATTTATAATTT--T-ATT-ATAT
19139320 TTTAAAATATTAATAA
62 TTTAAAATATTAATAA
19139336 TTTATATAAA
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
87 11 0.16
89 19 0.28
90 6 0.09
91 31 0.46
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (90 bp):
TAAAATAGTAATAATTTATATAAATTAAATATTAATATATTCATTTATAATTTTATTATATTTTA
AAATATTAATAAATGATCATTTATA
Found at i:19139385 original size:64 final size:63
Alignment explanation
Indices: 19139258--19139399 Score: 155
Period size: 64 Copynumber: 2.2 Consensus size: 63
19139248 ATCATTTATA
* * *
19139258 TAAAATAGTAATAATTAATAATTTAAATATTAATATTTTATTTATAATTTAATCATTAATATTT
1 TAAAATATTAATAATTAATAAATTAAATATTAATATTTCATTTATAATTT-ATCATTAATATTT
* * *
19139322 TAAAATATTAATAATTTATATAAATTAAATATTAATATGATTCATTTTTCATTT-T-ATT-TTAT
1 TAAAATATTAATAA-TTA-ATAAATTAAATATTAATAT--TTCATTTATAATTTATCATTAATAT
19139384 TT
62 TT
*
19139386 TTAAATATTAATAA
1 TAAAATATTAATAA
19139400 ATGATCATTT
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
64 31 0.46
65 6 0.09
66 19 0.28
68 11 0.16
ACGTcount: A:0.45, C:0.02, G:0.01, T:0.51
Consensus pattern (63 bp):
TAAAATATTAATAATTAATAAATTAAATATTAATATTTCATTTATAATTTATCATTAATATTT
Found at i:19139446 original size:15 final size:15
Alignment explanation
Indices: 19139426--19139494 Score: 67
Period size: 15 Copynumber: 4.8 Consensus size: 15
19139416 AATAGTAATA
19139426 ATTAATAATTTAAAT
1 ATTAATAATTTAAAT
19139441 ATTAAT-ATTT---T
1 ATTAATAATTTAAAT
*
19139452 ATTTATAATTT-AAT
1 ATTAATAATTTAAAT
*
19139466 CATTAATATTTTAAAAT
1 -ATTAATAATTT-AAAT
19139483 ATTAATAATTTA
1 ATTAATAATTTA
19139495 TATAAATTAA
Statistics
Matches: 44, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
11 6 0.14
12 4 0.09
14 5 0.11
15 16 0.36
16 10 0.23
17 3 0.07
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.52
Consensus pattern (15 bp):
ATTAATAATTTAAAT
Found at i:19139455 original size:19 final size:19
Alignment explanation
Indices: 19139433--19139501 Score: 59
Period size: 19 Copynumber: 3.4 Consensus size: 19
19139423 ATAATTAATA
19139433 ATTTAAATATTAATATTTT
1 ATTTAAATATTAATATTTT
*
19139452 ATTTATAAT-TTAATCATTAAT
1 ATTTA-AATATTAAT-ATT-TT
*
19139473 ATTTTAAAATATTAATAATTT
1 A-TTT-AAATATTAATATTTT
*
19139494 ATATAAAT
1 ATTTAAAT
19139502 TAAATATTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 12
0.71 0.07 0.21
Matches are distributed among these distances:
19 14 0.35
20 8 0.20
21 4 0.10
22 8 0.20
23 6 0.15
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.52
Consensus pattern (19 bp):
ATTTAAATATTAATATTTT
Found at i:19139476 original size:91 final size:90
Alignment explanation
Indices: 19139322--19139490 Score: 209
Period size: 91 Copynumber: 1.9 Consensus size: 90
19139312 ATTAATATTT
* * * *
19139322 TAAAATATTAATAATTTATATAAATTAAATATTAATATGATTCATTTTTCATTTTATTTTATTTT
1 TAAAATAGTAATAATTTATATAAATTAAATATTAATAT-ATTCATTTATAATTTTATTATATTTT
*
19139387 TAAATATTAATAAATGATCATTTATA
65 AAAATATTAATAAATGATCATTTATA
* *
19139413 TAAAATAGTAATAA-TTA-ATAATTTAAATATTAATAT-TTTATTTATAATTTAATCATTAATAT
1 TAAAATAGTAATAATTTATATAAATTAAATATTAATATATTCATTTATAATTT--T-ATT-ATAT
19139475 TTTAAAATATTAATAA
62 TTTAAAATATTAATAA
19139491 TTTATATAAA
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
87 11 0.16
89 19 0.28
90 6 0.09
91 31 0.46
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (90 bp):
TAAAATAGTAATAATTTATATAAATTAAATATTAATATATTCATTTATAATTTTATTATATTTTA
AAATATTAATAAATGATCATTTATA
Found at i:19139540 original size:64 final size:63
Alignment explanation
Indices: 19139413--19139554 Score: 155
Period size: 64 Copynumber: 2.2 Consensus size: 63
19139403 ATCATTTATA
* * *
19139413 TAAAATAGTAATAATTAATAATTTAAATATTAATATTTTATTTATAATTTAATCATTAATATTT
1 TAAAATATTAATAATTAATAAATTAAATATTAATATTTCATTTATAATTT-ATCATTAATATTT
* * *
19139477 TAAAATATTAATAATTTATATAAATTAAATATTAATATGATTCATTTTTCATTT-T-ATT-TTAT
1 TAAAATATTAATAA-TTA-ATAAATTAAATATTAATAT--TTCATTTATAATTTATCATTAATAT
19139539 TT
62 TT
*
19139541 TTAAATATTAATAA
1 TAAAATATTAATAA
19139555 ATGATCATTT
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
64 31 0.46
65 6 0.09
66 19 0.28
68 11 0.16
ACGTcount: A:0.45, C:0.02, G:0.01, T:0.51
Consensus pattern (63 bp):
TAAAATATTAATAATTAATAAATTAAATATTAATATTTCATTTATAATTTATCATTAATATTT
Found at i:19139601 original size:15 final size:15
Alignment explanation
Indices: 19139581--19139649 Score: 67
Period size: 15 Copynumber: 4.8 Consensus size: 15
19139571 AATAGTAATA
19139581 ATTAATAATTTAAAT
1 ATTAATAATTTAAAT
19139596 ATTAAT-ATTT---T
1 ATTAATAATTTAAAT
*
19139607 ATTTATAATTT-AAT
1 ATTAATAATTTAAAT
*
19139621 CATTAATATTTTAAAAT
1 -ATTAATAATTT-AAAT
19139638 ATTAATAATTTA
1 ATTAATAATTTA
19139650 TATAAATTAA
Statistics
Matches: 44, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
11 6 0.14
12 4 0.09
14 5 0.11
15 16 0.36
16 10 0.23
17 3 0.07
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.52
Consensus pattern (15 bp):
ATTAATAATTTAAAT
Found at i:19139610 original size:19 final size:19
Alignment explanation
Indices: 19139588--19139656 Score: 59
Period size: 19 Copynumber: 3.4 Consensus size: 19
19139578 ATAATTAATA
19139588 ATTTAAATATTAATATTTT
1 ATTTAAATATTAATATTTT
*
19139607 ATTTATAAT-TTAATCATTAAT
1 ATTTA-AATATTAAT-ATT-TT
*
19139628 ATTTTAAAATATTAATAATTT
1 A-TTT-AAATATTAATATTTT
*
19139649 ATATAAAT
1 ATTTAAAT
19139657 TAAATATTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 12
0.71 0.07 0.21
Matches are distributed among these distances:
19 14 0.35
20 8 0.20
21 4 0.10
22 8 0.20
23 6 0.15
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.52
Consensus pattern (19 bp):
ATTTAAATATTAATATTTT
Found at i:19139631 original size:91 final size:90
Alignment explanation
Indices: 19139477--19139645 Score: 209
Period size: 91 Copynumber: 1.9 Consensus size: 90
19139467 ATTAATATTT
* * * *
19139477 TAAAATATTAATAATTTATATAAATTAAATATTAATATGATTCATTTTTCATTTTATTTTATTTT
1 TAAAATAGTAATAATTTATATAAATTAAATATTAATAT-ATTCATTTATAATTTTATTATATTTT
*
19139542 TAAATATTAATAAATGATCATTTATA
65 AAAATATTAATAAATGATCATTTATA
* *
19139568 TAAAATAGTAATAA-TTA-ATAATTTAAATATTAATAT-TTTATTTATAATTTAATCATTAATAT
1 TAAAATAGTAATAATTTATATAAATTAAATATTAATATATTCATTTATAATTT--T-ATT-ATAT
19139630 TTTAAAATATTAATAA
62 TTTAAAATATTAATAA
19139646 TTTATATAAA
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
87 11 0.16
89 19 0.28
90 6 0.09
91 31 0.46
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (90 bp):
TAAAATAGTAATAATTTATATAAATTAAATATTAATATATTCATTTATAATTTTATTATATTTTA
AAATATTAATAAATGATCATTTATA
Found at i:19139695 original size:64 final size:63
Alignment explanation
Indices: 19139568--19139709 Score: 155
Period size: 64 Copynumber: 2.2 Consensus size: 63
19139558 ATCATTTATA
* * *
19139568 TAAAATAGTAATAATTAATAATTTAAATATTAATATTTTATTTATAATTTAATCATTAATATTT
1 TAAAATATTAATAATTAATAAATTAAATATTAATATTTCATTTATAATTT-ATCATTAATATTT
* * *
19139632 TAAAATATTAATAATTTATATAAATTAAATATTAATATGATTCATTTTTCATTT-T-ATT-TTAT
1 TAAAATATTAATAA-TTA-ATAAATTAAATATTAATAT--TTCATTTATAATTTATCATTAATAT
19139694 TT
62 TT
*
19139696 TTAAATATTAATAA
1 TAAAATATTAATAA
19139710 ATGATCATTT
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
64 31 0.46
65 6 0.09
66 19 0.28
68 11 0.16
ACGTcount: A:0.45, C:0.02, G:0.01, T:0.51
Consensus pattern (63 bp):
TAAAATATTAATAATTAATAAATTAAATATTAATATTTCATTTATAATTTATCATTAATATTT
Found at i:19139756 original size:15 final size:15
Alignment explanation
Indices: 19139736--19139804 Score: 67
Period size: 15 Copynumber: 4.8 Consensus size: 15
19139726 AATAGTAATA
19139736 ATTAATAATTTAAAT
1 ATTAATAATTTAAAT
19139751 ATTAAT-ATTT---T
1 ATTAATAATTTAAAT
*
19139762 ATTTATAATTT-AAT
1 ATTAATAATTTAAAT
*
19139776 CATTAATATTTTAAAAT
1 -ATTAATAATTT-AAAT
19139793 ATTAATAATTTA
1 ATTAATAATTTA
19139805 TATAAATTAA
Statistics
Matches: 44, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
11 6 0.14
12 4 0.09
14 5 0.11
15 16 0.36
16 10 0.23
17 3 0.07
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.52
Consensus pattern (15 bp):
ATTAATAATTTAAAT
Found at i:19139765 original size:19 final size:19
Alignment explanation
Indices: 19139743--19139811 Score: 59
Period size: 19 Copynumber: 3.4 Consensus size: 19
19139733 ATAATTAATA
19139743 ATTTAAATATTAATATTTT
1 ATTTAAATATTAATATTTT
*
19139762 ATTTATAAT-TTAATCATTAAT
1 ATTTA-AATATTAAT-ATT-TT
*
19139783 ATTTTAAAATATTAATAATTT
1 A-TTT-AAATATTAATATTTT
*
19139804 ATATAAAT
1 ATTTAAAT
19139812 TAAATATTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 12
0.71 0.07 0.21
Matches are distributed among these distances:
19 14 0.35
20 8 0.20
21 4 0.10
22 8 0.20
23 6 0.15
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.52
Consensus pattern (19 bp):
ATTTAAATATTAATATTTT
Found at i:19139786 original size:91 final size:90
Alignment explanation
Indices: 19139632--19139800 Score: 209
Period size: 91 Copynumber: 1.9 Consensus size: 90
19139622 ATTAATATTT
* * * *
19139632 TAAAATATTAATAATTTATATAAATTAAATATTAATATGATTCATTTTTCATTTTATTTTATTTT
1 TAAAATAGTAATAATTTATATAAATTAAATATTAATAT-ATTCATTTATAATTTTATTATATTTT
*
19139697 TAAATATTAATAAATGATCATTTATA
65 AAAATATTAATAAATGATCATTTATA
* *
19139723 TAAAATAGTAATAA-TTA-ATAATTTAAATATTAATAT-TTTATTTATAATTTAATCATTAATAT
1 TAAAATAGTAATAATTTATATAAATTAAATATTAATATATTCATTTATAATTT--T-ATT-ATAT
19139785 TTTAAAATATTAATAA
62 TTTAAAATATTAATAA
19139801 TTTATATAAA
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
87 11 0.16
89 19 0.28
90 6 0.09
91 31 0.46
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (90 bp):
TAAAATAGTAATAATTTATATAAATTAAATATTAATATATTCATTTATAATTTTATTATATTTTA
AAATATTAATAAATGATCATTTATA
Found at i:19139850 original size:64 final size:63
Alignment explanation
Indices: 19139723--19139864 Score: 155
Period size: 64 Copynumber: 2.2 Consensus size: 63
19139713 ATCATTTATA
* * *
19139723 TAAAATAGTAATAATTAATAATTTAAATATTAATATTTTATTTATAATTTAATCATTAATATTT
1 TAAAATATTAATAATTAATAAATTAAATATTAATATTTCATTTATAATTT-ATCATTAATATTT
* * *
19139787 TAAAATATTAATAATTTATATAAATTAAATATTAATATGATTCATTTTTCATTT-T-ATT-TTAT
1 TAAAATATTAATAA-TTA-ATAAATTAAATATTAATAT--TTCATTTATAATTTATCATTAATAT
19139849 TT
62 TT
*
19139851 TTAAATATTAATAA
1 TAAAATATTAATAA
19139865 ATGATCATTT
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
64 31 0.46
65 6 0.09
66 19 0.28
68 11 0.16
ACGTcount: A:0.45, C:0.02, G:0.01, T:0.51
Consensus pattern (63 bp):
TAAAATATTAATAATTAATAAATTAAATATTAATATTTCATTTATAATTTATCATTAATATTT
Found at i:19139911 original size:15 final size:15
Alignment explanation
Indices: 19139891--19139959 Score: 67
Period size: 15 Copynumber: 4.8 Consensus size: 15
19139881 AATAGTAATA
19139891 ATTAATAATTTAAAT
1 ATTAATAATTTAAAT
19139906 ATTAAT-ATTT---T
1 ATTAATAATTTAAAT
*
19139917 ATTTATAATTT-AAT
1 ATTAATAATTTAAAT
*
19139931 CATTAATATTTTAAAAT
1 -ATTAATAATTT-AAAT
19139948 ATTAATAATTTA
1 ATTAATAATTTA
19139960 TATAAATTAA
Statistics
Matches: 44, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
11 6 0.14
12 4 0.09
14 5 0.11
15 16 0.36
16 10 0.23
17 3 0.07
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.52
Consensus pattern (15 bp):
ATTAATAATTTAAAT
Found at i:19139920 original size:19 final size:19
Alignment explanation
Indices: 19139898--19139966 Score: 59
Period size: 19 Copynumber: 3.4 Consensus size: 19
19139888 ATAATTAATA
19139898 ATTTAAATATTAATATTTT
1 ATTTAAATATTAATATTTT
*
19139917 ATTTATAAT-TTAATCATTAAT
1 ATTTA-AATATTAAT-ATT-TT
*
19139938 ATTTTAAAATATTAATAATTT
1 A-TTT-AAATATTAATATTTT
*
19139959 ATATAAAT
1 ATTTAAAT
19139967 TAAATATTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 12
0.71 0.07 0.21
Matches are distributed among these distances:
19 14 0.35
20 8 0.20
21 4 0.10
22 8 0.20
23 6 0.15
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.52
Consensus pattern (19 bp):
ATTTAAATATTAATATTTT
Found at i:19139941 original size:91 final size:90
Alignment explanation
Indices: 19139787--19139955 Score: 209
Period size: 91 Copynumber: 1.9 Consensus size: 90
19139777 ATTAATATTT
* * * *
19139787 TAAAATATTAATAATTTATATAAATTAAATATTAATATGATTCATTTTTCATTTTATTTTATTTT
1 TAAAATAGTAATAATTTATATAAATTAAATATTAATAT-ATTCATTTATAATTTTATTATATTTT
*
19139852 TAAATATTAATAAATGATCATTTATA
65 AAAATATTAATAAATGATCATTTATA
* *
19139878 TAAAATAGTAATAA-TTA-ATAATTTAAATATTAATAT-TTTATTTATAATTTAATCATTAATAT
1 TAAAATAGTAATAATTTATATAAATTAAATATTAATATATTCATTTATAATTT--T-ATT-ATAT
19139940 TTTAAAATATTAATAA
62 TTTAAAATATTAATAA
19139956 TTTATATAAA
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
87 11 0.16
89 19 0.28
90 6 0.09
91 31 0.46
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (90 bp):
TAAAATAGTAATAATTTATATAAATTAAATATTAATATATTCATTTATAATTTTATTATATTTTA
AAATATTAATAAATGATCATTTATA
Found at i:19140005 original size:64 final size:63
Alignment explanation
Indices: 19139878--19140019 Score: 155
Period size: 64 Copynumber: 2.2 Consensus size: 63
19139868 ATCATTTATA
* * *
19139878 TAAAATAGTAATAATTAATAATTTAAATATTAATATTTTATTTATAATTTAATCATTAATATTT
1 TAAAATATTAATAATTAATAAATTAAATATTAATATTTCATTTATAATTT-ATCATTAATATTT
* * *
19139942 TAAAATATTAATAATTTATATAAATTAAATATTAATATGATTCATTTTTCATTT-T-ATT-TTAT
1 TAAAATATTAATAA-TTA-ATAAATTAAATATTAATAT--TTCATTTATAATTTATCATTAATAT
19140004 TT
62 TT
*
19140006 TTAAATATTAATAA
1 TAAAATATTAATAA
19140020 ATGATCATTT
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
64 31 0.46
65 6 0.09
66 19 0.28
68 11 0.16
ACGTcount: A:0.45, C:0.02, G:0.01, T:0.51
Consensus pattern (63 bp):
TAAAATATTAATAATTAATAAATTAAATATTAATATTTCATTTATAATTTATCATTAATATTT
Found at i:19140066 original size:15 final size:15
Alignment explanation
Indices: 19140046--19140114 Score: 67
Period size: 15 Copynumber: 4.8 Consensus size: 15
19140036 AATAGTAATA
19140046 ATTAATAATTTAAAT
1 ATTAATAATTTAAAT
19140061 ATTAAT-ATTT---T
1 ATTAATAATTTAAAT
*
19140072 ATTTATAATTT-AAT
1 ATTAATAATTTAAAT
*
19140086 CATTAATATTTTAAAAT
1 -ATTAATAATTT-AAAT
19140103 ATTAATAATTTA
1 ATTAATAATTTA
19140115 TATAAATTAA
Statistics
Matches: 44, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
11 6 0.14
12 4 0.09
14 5 0.11
15 16 0.36
16 10 0.23
17 3 0.07
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.52
Consensus pattern (15 bp):
ATTAATAATTTAAAT
Found at i:19140075 original size:19 final size:19
Alignment explanation
Indices: 19140053--19140121 Score: 59
Period size: 19 Copynumber: 3.4 Consensus size: 19
19140043 ATAATTAATA
19140053 ATTTAAATATTAATATTTT
1 ATTTAAATATTAATATTTT
*
19140072 ATTTATAAT-TTAATCATTAAT
1 ATTTA-AATATTAAT-ATT-TT
*
19140093 ATTTTAAAATATTAATAATTT
1 A-TTT-AAATATTAATATTTT
*
19140114 ATATAAAT
1 ATTTAAAT
19140122 TAAATATTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 12
0.71 0.07 0.21
Matches are distributed among these distances:
19 14 0.35
20 8 0.20
21 4 0.10
22 8 0.20
23 6 0.15
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.52
Consensus pattern (19 bp):
ATTTAAATATTAATATTTT
Found at i:19140096 original size:91 final size:90
Alignment explanation
Indices: 19139942--19140110 Score: 209
Period size: 91 Copynumber: 1.9 Consensus size: 90
19139932 ATTAATATTT
* * * *
19139942 TAAAATATTAATAATTTATATAAATTAAATATTAATATGATTCATTTTTCATTTTATTTTATTTT
1 TAAAATAGTAATAATTTATATAAATTAAATATTAATAT-ATTCATTTATAATTTTATTATATTTT
*
19140007 TAAATATTAATAAATGATCATTTATA
65 AAAATATTAATAAATGATCATTTATA
* *
19140033 TAAAATAGTAATAA-TTA-ATAATTTAAATATTAATAT-TTTATTTATAATTTAATCATTAATAT
1 TAAAATAGTAATAATTTATATAAATTAAATATTAATATATTCATTTATAATTT--T-ATT-ATAT
19140095 TTTAAAATATTAATAA
62 TTTAAAATATTAATAA
19140111 TTTATATAAA
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
87 11 0.16
89 19 0.28
90 6 0.09
91 31 0.46
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (90 bp):
TAAAATAGTAATAATTTATATAAATTAAATATTAATATATTCATTTATAATTTTATTATATTTTA
AAATATTAATAAATGATCATTTATA
Found at i:19140160 original size:64 final size:63
Alignment explanation
Indices: 19140033--19140174 Score: 155
Period size: 64 Copynumber: 2.2 Consensus size: 63
19140023 ATCATTTATA
* * *
19140033 TAAAATAGTAATAATTAATAATTTAAATATTAATATTTTATTTATAATTTAATCATTAATATTT
1 TAAAATATTAATAATTAATAAATTAAATATTAATATTTCATTTATAATTT-ATCATTAATATTT
* * *
19140097 TAAAATATTAATAATTTATATAAATTAAATATTAATATGATTCATTTTTCATTT-T-ATT-TTAT
1 TAAAATATTAATAA-TTA-ATAAATTAAATATTAATAT--TTCATTTATAATTTATCATTAATAT
19140159 TT
62 TT
*
19140161 TTAAATATTAATAA
1 TAAAATATTAATAA
19140175 ATGATCATTT
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
64 31 0.46
65 6 0.09
66 19 0.28
68 11 0.16
ACGTcount: A:0.45, C:0.02, G:0.01, T:0.51
Consensus pattern (63 bp):
TAAAATATTAATAATTAATAAATTAAATATTAATATTTCATTTATAATTTATCATTAATATTT
Found at i:19140221 original size:15 final size:15
Alignment explanation
Indices: 19140201--19140269 Score: 67
Period size: 15 Copynumber: 4.8 Consensus size: 15
19140191 AATAGTAATA
19140201 ATTAATAATTTAAAT
1 ATTAATAATTTAAAT
19140216 ATTAAT-ATTT---T
1 ATTAATAATTTAAAT
*
19140227 ATTTATAATTT-AAT
1 ATTAATAATTTAAAT
*
19140241 CATTAATATTTTAAAAT
1 -ATTAATAATTT-AAAT
19140258 ATTAATAATTTA
1 ATTAATAATTTA
19140270 TATAAATTAA
Statistics
Matches: 44, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
11 6 0.14
12 4 0.09
14 5 0.11
15 16 0.36
16 10 0.23
17 3 0.07
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.52
Consensus pattern (15 bp):
ATTAATAATTTAAAT
Found at i:19140230 original size:19 final size:19
Alignment explanation
Indices: 19140208--19140276 Score: 59
Period size: 19 Copynumber: 3.4 Consensus size: 19
19140198 ATAATTAATA
19140208 ATTTAAATATTAATATTTT
1 ATTTAAATATTAATATTTT
*
19140227 ATTTATAAT-TTAATCATTAAT
1 ATTTA-AATATTAAT-ATT-TT
*
19140248 ATTTTAAAATATTAATAATTT
1 A-TTT-AAATATTAATATTTT
*
19140269 ATATAAAT
1 ATTTAAAT
19140277 TAAATATTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 12
0.71 0.07 0.21
Matches are distributed among these distances:
19 14 0.35
20 8 0.20
21 4 0.10
22 8 0.20
23 6 0.15
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.52
Consensus pattern (19 bp):
ATTTAAATATTAATATTTT
Found at i:19140251 original size:91 final size:90
Alignment explanation
Indices: 19140097--19140265 Score: 209
Period size: 91 Copynumber: 1.9 Consensus size: 90
19140087 ATTAATATTT
* * * *
19140097 TAAAATATTAATAATTTATATAAATTAAATATTAATATGATTCATTTTTCATTTTATTTTATTTT
1 TAAAATAGTAATAATTTATATAAATTAAATATTAATAT-ATTCATTTATAATTTTATTATATTTT
*
19140162 TAAATATTAATAAATGATCATTTATA
65 AAAATATTAATAAATGATCATTTATA
* *
19140188 TAAAATAGTAATAA-TTA-ATAATTTAAATATTAATAT-TTTATTTATAATTTAATCATTAATAT
1 TAAAATAGTAATAATTTATATAAATTAAATATTAATATATTCATTTATAATTT--T-ATT-ATAT
19140250 TTTAAAATATTAATAA
62 TTTAAAATATTAATAA
19140266 TTTATATAAA
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
87 11 0.16
89 19 0.28
90 6 0.09
91 31 0.46
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (90 bp):
TAAAATAGTAATAATTTATATAAATTAAATATTAATATATTCATTTATAATTTTATTATATTTTA
AAATATTAATAAATGATCATTTATA
Found at i:19140315 original size:64 final size:63
Alignment explanation
Indices: 19140188--19140329 Score: 155
Period size: 64 Copynumber: 2.2 Consensus size: 63
19140178 ATCATTTATA
* * *
19140188 TAAAATAGTAATAATTAATAATTTAAATATTAATATTTTATTTATAATTTAATCATTAATATTT
1 TAAAATATTAATAATTAATAAATTAAATATTAATATTTCATTTATAATTT-ATCATTAATATTT
* * *
19140252 TAAAATATTAATAATTTATATAAATTAAATATTAATATGATTCATTTTTCATTT-T-ATT-TTAT
1 TAAAATATTAATAA-TTA-ATAAATTAAATATTAATAT--TTCATTTATAATTTATCATTAATAT
19140314 TT
62 TT
*
19140316 TTAAATATTAATAA
1 TAAAATATTAATAA
19140330 ATGATCATTT
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
64 31 0.46
65 6 0.09
66 19 0.28
68 11 0.16
ACGTcount: A:0.45, C:0.02, G:0.01, T:0.51
Consensus pattern (63 bp):
TAAAATATTAATAATTAATAAATTAAATATTAATATTTCATTTATAATTTATCATTAATATTT
Found at i:19140376 original size:15 final size:15
Alignment explanation
Indices: 19140356--19140424 Score: 67
Period size: 15 Copynumber: 4.8 Consensus size: 15
19140346 AATAGTAATA
19140356 ATTAATAATTTAAAT
1 ATTAATAATTTAAAT
19140371 ATTAAT-ATTT---T
1 ATTAATAATTTAAAT
*
19140382 ATTTATAATTT-AAT
1 ATTAATAATTTAAAT
*
19140396 CATTAATATTTTAAAAT
1 -ATTAATAATTT-AAAT
19140413 ATTAATAATTTA
1 ATTAATAATTTA
19140425 TATAAATTAA
Statistics
Matches: 44, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
11 6 0.14
12 4 0.09
14 5 0.11
15 16 0.36
16 10 0.23
17 3 0.07
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.52
Consensus pattern (15 bp):
ATTAATAATTTAAAT
Found at i:19140385 original size:19 final size:19
Alignment explanation
Indices: 19140363--19140431 Score: 59
Period size: 19 Copynumber: 3.4 Consensus size: 19
19140353 ATAATTAATA
19140363 ATTTAAATATTAATATTTT
1 ATTTAAATATTAATATTTT
*
19140382 ATTTATAAT-TTAATCATTAAT
1 ATTTA-AATATTAAT-ATT-TT
*
19140403 ATTTTAAAATATTAATAATTT
1 A-TTT-AAATATTAATATTTT
*
19140424 ATATAAAT
1 ATTTAAAT
19140432 TAAATATTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 12
0.71 0.07 0.21
Matches are distributed among these distances:
19 14 0.35
20 8 0.20
21 4 0.10
22 8 0.20
23 6 0.15
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.52
Consensus pattern (19 bp):
ATTTAAATATTAATATTTT
Found at i:19140406 original size:91 final size:90
Alignment explanation
Indices: 19140252--19140420 Score: 209
Period size: 91 Copynumber: 1.9 Consensus size: 90
19140242 ATTAATATTT
* * * *
19140252 TAAAATATTAATAATTTATATAAATTAAATATTAATATGATTCATTTTTCATTTTATTTTATTTT
1 TAAAATAGTAATAATTTATATAAATTAAATATTAATAT-ATTCATTTATAATTTTATTATATTTT
*
19140317 TAAATATTAATAAATGATCATTTATA
65 AAAATATTAATAAATGATCATTTATA
* *
19140343 TAAAATAGTAATAA-TTA-ATAATTTAAATATTAATAT-TTTATTTATAATTTAATCATTAATAT
1 TAAAATAGTAATAATTTATATAAATTAAATATTAATATATTCATTTATAATTT--T-ATT-ATAT
19140405 TTTAAAATATTAATAA
62 TTTAAAATATTAATAA
19140421 TTTATATAAA
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
87 11 0.16
89 19 0.28
90 6 0.09
91 31 0.46
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (90 bp):
TAAAATAGTAATAATTTATATAAATTAAATATTAATATATTCATTTATAATTTTATTATATTTTA
AAATATTAATAAATGATCATTTATA
Found at i:19140470 original size:64 final size:63
Alignment explanation
Indices: 19140343--19140484 Score: 155
Period size: 64 Copynumber: 2.2 Consensus size: 63
19140333 ATCATTTATA
* * *
19140343 TAAAATAGTAATAATTAATAATTTAAATATTAATATTTTATTTATAATTTAATCATTAATATTT
1 TAAAATATTAATAATTAATAAATTAAATATTAATATTTCATTTATAATTT-ATCATTAATATTT
* * *
19140407 TAAAATATTAATAATTTATATAAATTAAATATTAATATGATTCATTTTTCATTT-T-ATT-TTAT
1 TAAAATATTAATAA-TTA-ATAAATTAAATATTAATAT--TTCATTTATAATTTATCATTAATAT
19140469 TT
62 TT
*
19140471 TTAAATATTAATAA
1 TAAAATATTAATAA
19140485 ATGATCATTT
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
64 31 0.46
65 6 0.09
66 19 0.28
68 11 0.16
ACGTcount: A:0.45, C:0.02, G:0.01, T:0.51
Consensus pattern (63 bp):
TAAAATATTAATAATTAATAAATTAAATATTAATATTTCATTTATAATTTATCATTAATATTT
Found at i:19140531 original size:15 final size:14
Alignment explanation
Indices: 19140506--19140564 Score: 52
Period size: 15 Copynumber: 4.2 Consensus size: 14
19140496 TATAAAATAG
19140506 TAATAATTAATAATT
1 TAAT-ATTAATAATT
19140521 TAAATATTAAT-ATT
1 T-AATATTAATAATT
*
19140535 T--TATTTATAATT
1 TAATATTAATAATT
*
19140547 TAATCATTAATATTT
1 TAAT-ATTAATAATT
19140562 TAA
1 TAA
19140565 NTTATAAATT
Statistics
Matches: 36, Mismatches: 3, Indels: 10
0.73 0.06 0.20
Matches are distributed among these distances:
11 6 0.17
12 4 0.11
14 5 0.14
15 18 0.50
16 3 0.08
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.53
Consensus pattern (14 bp):
TAATATTAATAATT
Found at i:19147325 original size:20 final size:20
Alignment explanation
Indices: 19147300--19147345 Score: 67
Period size: 20 Copynumber: 2.3 Consensus size: 20
19147290 TTTTGACCCC
19147300 ATTTGACTTATT-AGAGTATA
1 ATTTGACTTATTGA-AGTATA
*
19147320 ATTTGACTTATTGAAGTATG
1 ATTTGACTTATTGAAGTATA
19147340 ATTTGA
1 ATTTGA
19147346 GGTTTAGAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 23 0.96
21 1 0.04
ACGTcount: A:0.33, C:0.04, G:0.17, T:0.46
Consensus pattern (20 bp):
ATTTGACTTATTGAAGTATA
Found at i:19147421 original size:28 final size:27
Alignment explanation
Indices: 19147390--19147442 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
19147380 TTTGGAGTAT
*
19147390 AGGGGTAAAATGGTAATTTTGCCACCTC
1 AGGGGCAAAATGGTAATTTT-CCACCTC
*
19147418 AGGGGCAAAATTGTAATTTTCCACC
1 AGGGGCAAAATGGTAATTTTCCACC
19147443 ACCAGGATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 5 0.22
28 18 0.78
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (27 bp):
AGGGGCAAAATGGTAATTTTCCACCTC
Found at i:19147448 original size:28 final size:28
Alignment explanation
Indices: 19147390--19147448 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
19147380 TTTGGAGTAT
* *
19147390 AGGGGTAAAATGGTAATTTTGCCACCTC
1 AGGGGCAAAATGGTAATTTTGCCACCCC
*
19147418 AGGGGCAAAATTGTAATTTT-CCACCACC
1 AGGGGCAAAATGGTAATTTTGCCACC-CC
19147446 AGG
1 AGG
19147449 ATATTTTTTC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 5 0.19
28 22 0.81
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (28 bp):
AGGGGCAAAATGGTAATTTTGCCACCCC
Found at i:19167207 original size:9 final size:8
Alignment explanation
Indices: 19167193--19167229 Score: 58
Period size: 8 Copynumber: 4.8 Consensus size: 8
19167183 AAAGTTTTCA
19167193 AATTTTTT
1 AATTTTTT
19167201 AATTTTTT
1 AATTTTTT
19167209 AATTTTTT
1 AATTTTTT
*
19167217 -ATTTTAT
1 AATTTTTT
19167224 AATTTT
1 AATTTT
19167230 ATCTTTATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
7 6 0.22
8 21 0.78
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (8 bp):
AATTTTTT
Found at i:19167220 original size:15 final size:16
Alignment explanation
Indices: 19167193--19167229 Score: 58
Period size: 15 Copynumber: 2.4 Consensus size: 16
19167183 AAAGTTTTCA
*
19167193 AATTTTTTAATTTTTT
1 AATTTTTTAATTTTAT
19167209 AATTTTTT-ATTTTAT
1 AATTTTTTAATTTTAT
19167224 AATTTT
1 AATTTT
19167230 ATCTTTATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 12 0.60
16 8 0.40
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (16 bp):
AATTTTTTAATTTTAT
Found at i:19168222 original size:23 final size:25
Alignment explanation
Indices: 19168170--19168223 Score: 62
Period size: 23 Copynumber: 2.3 Consensus size: 25
19168160 TAATCTTGGT
19168170 TCTTTTTAATCAGTAATATTTTATA
1 TCTTTTTAATCAGTAATATTTTATA
*
19168195 T-TTTTT-ATCA-TCATATTATT-TA
1 TCTTTTTAATCAGTAATATT-TTATA
19168217 TCTTTTT
1 TCTTTTT
19168224 TATTTTTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
22 9 0.35
23 11 0.42
24 5 0.19
25 1 0.04
ACGTcount: A:0.26, C:0.09, G:0.02, T:0.63
Consensus pattern (25 bp):
TCTTTTTAATCAGTAATATTTTATA
Found at i:19182834 original size:43 final size:43
Alignment explanation
Indices: 19182773--19182916 Score: 209
Period size: 43 Copynumber: 3.3 Consensus size: 43
19182763 CTTGTAAAAC
* *
19182773 TATGATGCTATCTGTTGAGACTGCTCAGGGTGATGATTATGTT
1 TATGATGCCATCTGTTGAGACTACTCAGGGTGATGATTATGTT
*
19182816 TATGATGCCATCTGTTGAGACTACTTAGGGTGATGATTATGTT
1 TATGATGCCATCTGTTGAGACTACTCAGGGTGATGATTATGTT
* * **
19182859 TATGATGCCATCCGTTGAGATTACTCTA-GGTGATGATTATGAC
1 TATGATGCCATCTGTTGAGACTACTC-AGGGTGATGATTATGTT
19182902 TATGATGCCATCTGT
1 TATGATGCCATCTGT
19182917 AGGGAGATTA
Statistics
Matches: 91, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
43 90 0.99
44 1 0.01
ACGTcount: A:0.23, C:0.14, G:0.25, T:0.38
Consensus pattern (43 bp):
TATGATGCCATCTGTTGAGACTACTCAGGGTGATGATTATGTT
Found at i:19190405 original size:22 final size:21
Alignment explanation
Indices: 19190365--19190405 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
19190355 GGACAAGTGT
**
19190365 ATGGTGAAAATTTGGAAACAA
1 ATGGTGAAAATTTAAAAACAA
19190386 ATGGATGAAAATTTAAAAAC
1 ATGG-TGAAAATTTAAAAAC
19190406 GGACCAATGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.51, C:0.05, G:0.20, T:0.24
Consensus pattern (21 bp):
ATGGTGAAAATTTAAAAACAA
Found at i:19198218 original size:21 final size:21
Alignment explanation
Indices: 19198194--19198245 Score: 52
Period size: 24 Copynumber: 2.3 Consensus size: 21
19198184 ACACCATCTA
19198194 TATCTATT-TATAACCAAAAAT
1 TATCTATTGTATAA-CAAAAAT
19198215 TATCCATAATTGTATAACAAAAAT
1 TAT-C-T-ATTGTATAACAAAAAT
*
19198239 CATCTAT
1 TATCTAT
19198246 CAGCATGTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
21 5 0.19
22 2 0.08
23 2 0.08
24 12 0.46
25 5 0.19
ACGTcount: A:0.46, C:0.15, G:0.02, T:0.37
Consensus pattern (21 bp):
TATCTATTGTATAACAAAAAT
Found at i:19201254 original size:24 final size:24
Alignment explanation
Indices: 19201225--19201276 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
19201215 TGATATATTG
19201225 ATTGCACTTGTGTTATCACAGTAT
1 ATTGCACTTGTGTTATCACAGTAT
19201249 ATTGCACTTGTGTTATCACAGTAT
1 ATTGCACTTGTGTTATCACAGTAT
19201273 ATTG
1 ATTG
19201277 GTACACTGTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.25, C:0.15, G:0.17, T:0.42
Consensus pattern (24 bp):
ATTGCACTTGTGTTATCACAGTAT
Found at i:19207265 original size:49 final size:49
Alignment explanation
Indices: 19207184--19207277 Score: 134
Period size: 49 Copynumber: 1.9 Consensus size: 49
19207174 AACACGTGGG
* *
19207184 TGGGTTTTTAGGGCGTGGGCTTAAGGTATGATGTGTTTGGGTTTGTCGT
1 TGGGTTTTTAGGGCGTGGGCTTAAGGTATGATGAGGTTGGGTTTGTCGT
* * * *
19207233 TGGGTTTTTGGGGTGTGGGCTTGAGGTCTGATGAGGTTGGGTTTG
1 TGGGTTTTTAGGGCGTGGGCTTAAGGTATGATGAGGTTGGGTTTG
19207278 GGCTTCACAC
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
49 39 1.00
ACGTcount: A:0.09, C:0.05, G:0.45, T:0.41
Consensus pattern (49 bp):
TGGGTTTTTAGGGCGTGGGCTTAAGGTATGATGAGGTTGGGTTTGTCGT
Found at i:19207322 original size:24 final size:23
Alignment explanation
Indices: 19207267--19207323 Score: 60
Period size: 24 Copynumber: 2.4 Consensus size: 23
19207257 GGTCTGATGA
*
19207267 GGTTGGGTTTGGGCTTCACACTT
1 GGTTGGGTTTGGGCTTCACACGT
** * *
19207290 GGTACGGTTCTTGGCTTGACACGT
1 GGTTGGGTT-TGGGCTTCACACGT
19207314 GGTTGGGTTT
1 GGTTGGGTTT
19207324 TTGAGGTGTT
Statistics
Matches: 26, Mismatches: 7, Indels: 2
0.74 0.20 0.06
Matches are distributed among these distances:
23 8 0.31
24 18 0.69
ACGTcount: A:0.09, C:0.16, G:0.37, T:0.39
Consensus pattern (23 bp):
GGTTGGGTTTGGGCTTCACACGT
Found at i:19208152 original size:21 final size:21
Alignment explanation
Indices: 19208128--19208168 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
19208118 TTGGTTTGGC
*
19208128 TTTTCTCTTTTCCTTTTAGTT
1 TTTTCTCTTTTCCATTTAGTT
19208149 TTTTCTCTTTTCCATTTAGT
1 TTTTCTCTTTTCCATTTAGT
19208169 CTTTCAGTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.07, C:0.20, G:0.05, T:0.68
Consensus pattern (21 bp):
TTTTCTCTTTTCCATTTAGTT
Found at i:19209951 original size:22 final size:22
Alignment explanation
Indices: 19209926--19209974 Score: 89
Period size: 22 Copynumber: 2.2 Consensus size: 22
19209916 TTTCTTAAAT
19209926 TTTTTCATGGAAATCATATATG
1 TTTTTCATGGAAATCATATATG
*
19209948 TTTTTCATGGAAATCATTTATG
1 TTTTTCATGGAAATCATATATG
19209970 TTTTT
1 TTTTT
19209975 TCTTATTTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.27, C:0.08, G:0.12, T:0.53
Consensus pattern (22 bp):
TTTTTCATGGAAATCATATATG
Found at i:19210523 original size:137 final size:137
Alignment explanation
Indices: 19210269--19210526 Score: 342
Period size: 137 Copynumber: 1.9 Consensus size: 137
19210259 ATTTAAATTT
* * *
19210269 TTTATTCTTTATTCATTTCTTATATGTCTTTTTTCATGTGTTTTGTTGTTAATTTCTATTTGGTT
1 TTTATTATTTATTCATTTCTTATATGTCTTTTGTCATGTGTTTTGTTGTTAATTGCTATTTGGTT
* * * * **
19210334 TTTATTATGCAACGAAGTTTGCTAAATCAATTGCTTACTCATGTATGGTTAACTTTTGAATTATA
66 TTTATTATACAACAAAATTTGCTAAATCAATTGCTTACTCAGGTATACTTAACTTTTGAATTATA
19210399 TTTTTAC
131 TTTTTAC
*
19210406 TTTATTATTTATTCATATT-TAATATAT-TC-TTTGTCATGTGTTTTGTTGTTAATTGCTATTTT
1 TTTATTATTTATTCAT-TTCT--TATATGTCTTTTGTCATGTGTTTTGTTGTTAATTGCTATTTG
* * * *
19210468 GTTTTTGTTCTACAGCAAAATTTGCTAAATCAATTGCTTACTTAGGTATACTTAACTTT
63 GTTTTTATTATACAACAAAATTTGCTAAATCAATTGCTTACTCAGGTATACTTAACTTT
19210527 CCAATTACAT
Statistics
Matches: 104, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
137 95 0.91
138 4 0.04
139 5 0.05
ACGTcount: A:0.23, C:0.11, G:0.11, T:0.55
Consensus pattern (137 bp):
TTTATTATTTATTCATTTCTTATATGTCTTTTGTCATGTGTTTTGTTGTTAATTGCTATTTGGTT
TTTATTATACAACAAAATTTGCTAAATCAATTGCTTACTCAGGTATACTTAACTTTTGAATTATA
TTTTTAC
Found at i:19211919 original size:4 final size:4
Alignment explanation
Indices: 19211905--19211947 Score: 79
Period size: 4 Copynumber: 11.0 Consensus size: 4
19211895 GTACTAATCA
19211905 CTTT C-TT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT
1 CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT
19211948 AATTGACTAA
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 3 0.08
4 35 0.92
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (4 bp):
CTTT
Found at i:19215188 original size:15 final size:15
Alignment explanation
Indices: 19215170--19215202 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
19215160 CCTGAGGCAC
19215170 ATGATCTCTAATGAA
1 ATGATCTCTAATGAA
*
19215185 ATGATGTCTAATGAA
1 ATGATCTCTAATGAA
19215200 ATG
1 ATG
19215203 TGCTTAGTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.39, C:0.09, G:0.18, T:0.33
Consensus pattern (15 bp):
ATGATCTCTAATGAA
Found at i:19234801 original size:417 final size:417
Alignment explanation
Indices: 19233981--19234978 Score: 1358
Period size: 417 Copynumber: 2.4 Consensus size: 417
19233971 AGGGGAAGCA
* * * * * * * * *
19233981 ATATTGTATTAGTCAACTGCATAAATATATGATTTTTGCTAGTAAACGAAAAGATAAACTGGTAT
1 ATATTGTATTATTAAACTGCATAAATGTATGGTTCTTACTGGTAGAGGAAAAGATAAACTGGTAT
* * * *
19234046 TAATTGAAAATAGTTATTTGCTATGGTTTCAATCACTAAAAGTTGCTCCTAAATATATGATTTTA
66 TAATTGAAGATAGTTATTTGCTTTGGTTTCACTCACTAAAAGTTGCTCCTAAATATATGGTTTTA
* *
19234111 AAA-ACGTAGTTAACCAAAGAAGATAATAATCCTGTTAAACATCCAGTAATTTTTTTCCATTAAA
131 AAACA-GTACTTAACCAAAGAAGATAATAATCCTGTTAAACATCCAATAATTTTTTTCCATTAAA
* * * * *
19234175 AATATATTACTTAAACAAAATGAATAACATTTGTGTTTTAAACGTTTTTCATTTTTGTTAGATGA
195 AATATATTACTCAAACAAAATGAATAACATTTGTGATTTAAACGGTTTCCATATTTGTTAGATGA
* * * * **
19234240 TGTATATCATCTTTCTAGATGCAAGACTTGTACTTATCAAAATGTTAAAGGAATATCAACTGTTA
260 TGTATATCAACTTTCTAGATGCAAGACTTATACTTAGCAAAATGTTAAAGGAATATAAACTACTA
* *
19234305 CACAATTGTCAGATATGTCTAACTATAGTGACAGTTTGCTTTTCCTTTTGCCTTATACATTGGTT
325 CACAACTGTCAGATATGTCTAACTATAGTGACAGTTTGCTTTTCCTTTTGCCATATACATTGGTT
*
19234370 CCATTTCCTTGGTTTTTGTTGTTGTACT
390 CCATTTCCTTGGTTTCTGTTGTTGTACT
* *
19234398 ATATTGTATTATTAAACTGCATGAATGTATGGTTCTTACTGGTAGAGGAAAAGATAAATTGGTAT
1 ATATTGTATTATTAAACTGCATAAATGTATGGTTCTTACTGGTAGAGGAAAAGATAAACTGGTAT
* *
19234463 TAATTGAAGATAGTTATGTGCTTTGGTTTCACTCACTAAAAGTTGCTTCTAAATATATGGTTTTA
66 TAATTGAAGATAGTTATTTGCTTTGGTTTCACTCACTAAAAGTTGCTCCTAAATATATGGTTTTA
* * *
19234528 AAACAGTACTTAACCAAAGAAGATAATAATCTTGTTAAACATTCAATAATTTTTTTTCATTAAAA
131 AAACAGTACTTAACCAAAGAAGATAATAATCCTGTTAAACATCCAATAATTTTTTTCCATTAAAA
*
19234593 ATATATTACTCAAACAAAATGAATAACATTTGTGATTTGAA-GGTTTCCATATTTGTTAGATGAT
196 ATATATTACTCAAACAAAATGAATAACATTTGTGATTTAAACGGTTTCCATATTTGTTAGATGAT
*
19234657 GTATATCAACTTTCTAGATGCAAGACTTATACTTAGCAAAATGTTAAGGGAATATAAACTACTAC
261 GTATATCAACTTTCTAGATGCAAGACTTATACTTAGCAAAATGTTAAAGGAATATAAACTACTAC
* * * *
19234722 ACAACTGTCTGATTTGTCTAACTATGGTGACAGTTTGCTTTTCCTTTTGCCATATACATTTGTTT
326 ACAACTGTCAGATATGTCTAACTATAGTGACAGTTTGCTTTTCCTTTTGCCATATACA-TTGGTT
* ** *
19234787 TCATTTTTTTGGTTTCTGTTGTTGTGCT
390 CCATTTCCTTGGTTTCTGTTGTTGTACT
* * * * * *
19234815 ATATTGTATTATTGAACTACATCAATGTATGGTTCTTATTGGTAGAGAAAAAGATAAACTAGTAT
1 ATATTGTATTATTAAACTGCATAAATGTATGGTTCTTACTGGTAGAGGAAAAGATAAACTGGTAT
* * * * *
19234880 TAATTAAAGATAGTTATTTG-TTCTGGTTTC-CATTACTAGAAA-TCTGCACCTACATATATGGG
66 TAATTGAAGATAGTTATTTGCTT-TGGTTTCAC-TCACTA-AAAGT-TGCTCCTAAATATATGGT
* * * *
19234942 TATAAAACAGTACTTATCCGAAGAAGACAATAATCCT
127 TTTAAAACAGTACTTAACCAAAGAAGATAATAATCCT
19234979 ATCAAAGATT
Statistics
Matches: 510, Mismatches: 65, Indels: 11
0.87 0.11 0.02
Matches are distributed among these distances:
416 134 0.26
417 326 0.64
418 50 0.10
ACGTcount: A:0.34, C:0.13, G:0.14, T:0.39
Consensus pattern (417 bp):
ATATTGTATTATTAAACTGCATAAATGTATGGTTCTTACTGGTAGAGGAAAAGATAAACTGGTAT
TAATTGAAGATAGTTATTTGCTTTGGTTTCACTCACTAAAAGTTGCTCCTAAATATATGGTTTTA
AAACAGTACTTAACCAAAGAAGATAATAATCCTGTTAAACATCCAATAATTTTTTTCCATTAAAA
ATATATTACTCAAACAAAATGAATAACATTTGTGATTTAAACGGTTTCCATATTTGTTAGATGAT
GTATATCAACTTTCTAGATGCAAGACTTATACTTAGCAAAATGTTAAAGGAATATAAACTACTAC
ACAACTGTCAGATATGTCTAACTATAGTGACAGTTTGCTTTTCCTTTTGCCATATACATTGGTTC
CATTTCCTTGGTTTCTGTTGTTGTACT
Found at i:19241888 original size:72 final size:72
Alignment explanation
Indices: 19241739--19241880 Score: 189
Period size: 72 Copynumber: 2.0 Consensus size: 72
19241729 CATAACCAAG
*
19241739 AGTG-TGATAAAATGATTTCAGCATCAGAACAGAACAAGCACCTGACTGAAACGATGTCTGATGT
1 AGTGCTGATAAAATGATTTCAGCATCAGAACAGAACAAGCACCTGACTGAAACAATGTCTGATGT
19241803 TGTGCCA
66 TGTGCCA
* * ** * * *
19241810 AGTGCTGATAAAATGGTTTCAGCATCAGAAGAGAATGAGCATCT-AGCTGAAGCAATGTCTGATT
1 AGTGCTGATAAAATGATTTCAGCATCAGAACAGAACAAGCACCTGA-CTGAAACAATGTCTGATG
19241874 TTGTGCC
65 TTGTGCC
19241881 CGGTGCTGCT
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
71 5 0.08
72 56 0.92
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26
Consensus pattern (72 bp):
AGTGCTGATAAAATGATTTCAGCATCAGAACAGAACAAGCACCTGACTGAAACAATGTCTGATGT
TGTGCCA
Found at i:19244569 original size:27 final size:27
Alignment explanation
Indices: 19244510--19244571 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
19244500 AATTAATTAA
**
19244510 ATGGATAGTAAACAGGTCACATCTTAG
1 ATGGATAGTAAACAAATCACATCTTAG
* * * *
19244537 ACGGATAGTTAACAAATCACATGTTAT
1 ATGGATAGTAAACAAATCACATCTTAG
19244564 ATGGATAG
1 ATGGATAG
19244572 ACGATAACAT
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.39, C:0.13, G:0.21, T:0.27
Consensus pattern (27 bp):
ATGGATAGTAAACAAATCACATCTTAG
Found at i:19251940 original size:2 final size:2
Alignment explanation
Indices: 19251933--19251966 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
19251923 GTTGGATGAT
19251933 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
19251967 CTATCATGAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:19255358 original size:2 final size:2
Alignment explanation
Indices: 19255351--19255389 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
19255341 ATGTTGGATG
19255351 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
19255390 TCTCATGATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:19257574 original size:22 final size:21
Alignment explanation
Indices: 19257549--19257595 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 21
19257539 TTTTTTTGTC
19257549 ATTTT-TTTATTATTTAATTATT
1 ATTTTCTTT-TTATTTAATT-TT
*
19257571 ATTTTCTTTTTATTTTATTTT
1 ATTTTCTTTTTATTTAATTTT
19257592 ATTT
1 ATTT
19257596 ATCATATTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 6 0.26
22 14 0.61
23 3 0.13
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.77
Consensus pattern (21 bp):
ATTTTCTTTTTATTTAATTTT
Found at i:19258094 original size:13 final size:13
Alignment explanation
Indices: 19258076--19258115 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
19258066 GTTATTTCCA
19258076 TTTCTTTCTCTTT
1 TTTCTTTCTCTTT
*
19258089 TTTCTTTGTCTTT
1 TTTCTTTCTCTTT
*
19258102 TCTCTTTCT-TTT
1 TTTCTTTCTCTTT
19258114 TT
1 TT
19258116 ATATTACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
12 4 0.17
13 19 0.83
ACGTcount: A:0.00, C:0.20, G:0.03, T:0.78
Consensus pattern (13 bp):
TTTCTTTCTCTTT
Found at i:19269769 original size:12 final size:12
Alignment explanation
Indices: 19269735--19269812 Score: 72
Period size: 11 Copynumber: 6.4 Consensus size: 12
19269725 GCTAATGCAA
19269735 TTATCTATTTTTT
1 TTAT-TATTTTTT
* *
19269748 TTGTCA-TTTTT
1 TTATTATTTTTT
19269759 TTATTA-TTTTT
1 TTATTATTTTTT
19269770 TTATTATTTTCATT
1 TTATTATTTT--TT
19269784 TTATT-TTATTTT
1 TTATTATT-TTTT
*
19269796 TTATTATATTTT
1 TTATTATTTTTT
19269808 TTATT
1 TTATT
19269813 TTATTTCTAA
Statistics
Matches: 55, Mismatches: 5, Indels: 11
0.77 0.07 0.15
Matches are distributed among these distances:
11 20 0.36
12 20 0.36
13 6 0.11
14 9 0.16
ACGTcount: A:0.18, C:0.04, G:0.01, T:0.77
Consensus pattern (12 bp):
TTATTATTTTTT
Found at i:19269778 original size:22 final size:22
Alignment explanation
Indices: 19269743--19269812 Score: 68
Period size: 26 Copynumber: 3.0 Consensus size: 22
19269733 AATTATCTAT
* *
19269743 TTTTTTTGTCATTTTTTTATTA
1 TTTTTTTATTATTTTTTTATTA
*
19269765 TTTTTTTATTATTTTCATTTTATTT
1 TTTTTTTATTA-TTT--TTTTATTA
19269790 TATTTTTTATTATATTTTTTATT
1 T-TTTTTTATTAT-TTTTTTATT
19269813 TTATTTCTAA
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
22 9 0.22
23 3 0.08
24 7 0.17
25 9 0.22
26 12 0.30
ACGTcount: A:0.17, C:0.03, G:0.01, T:0.79
Consensus pattern (22 bp):
TTTTTTTATTATTTTTTTATTA
Found at i:19269791 original size:5 final size:5
Alignment explanation
Indices: 19269762--19269818 Score: 55
Period size: 5 Copynumber: 11.2 Consensus size: 5
19269752 CATTTTTTTA
* *
19269762 TTATT TTTTT ATTATT TTCATT TTATT TTATT TT-TT ATTATA TT-TT
1 TTATT TTATT -TTATT TT-ATT TTATT TTATT TTATT -TTATT TTATT
19269808 TTATT TTATT T
1 TTATT TTATT T
19269819 CTAATTATTA
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
4 5 0.12
5 28 0.65
6 10 0.23
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.79
Consensus pattern (5 bp):
TTATT
Found at i:19269808 original size:29 final size:30
Alignment explanation
Indices: 19269757--19269827 Score: 83
Period size: 29 Copynumber: 2.3 Consensus size: 30
19269747 TTTGTCATTT
*
19269757 TTTTATTATTTTTTTATTATTTTCATTTTA
1 TTTTATTATTTTATTATTATTTTCATTTTA
*
19269787 TTTTATT-TTTTATTA-TATTTTTTATTTTA
1 TTTTATTATTTTATTATTA-TTTTCATTTTA
19269816 TTTCTAATTATT
1 TTT-T-ATTATT
19269828 ATTTGTTCAT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
28 2 0.06
29 20 0.57
30 8 0.23
31 3 0.09
32 2 0.06
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (30 bp):
TTTTATTATTTTATTATTATTTTCATTTTA
Found at i:19269817 original size:12 final size:12
Alignment explanation
Indices: 19269755--19269818 Score: 69
Period size: 12 Copynumber: 5.2 Consensus size: 12
19269745 TTTTTGTCAT
*
19269755 TTTTTTATTAT-
1 TTTTTTATTTTA
19269766 TTTTTTATTATT-
1 TTTTTTATT-TTA
19269778 TTCATTTTATTTTA
1 TT--TTTTATTTTA
*
19269792 TTTTTTATTATA
1 TTTTTTATTTTA
19269804 TTTTTTATTTTA
1 TTTTTTATTTTA
19269816 TTT
1 TTT
19269819 CTAATTATTA
Statistics
Matches: 46, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
11 9 0.20
12 26 0.57
13 2 0.04
14 9 0.20
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.80
Consensus pattern (12 bp):
TTTTTTATTTTA
Found at i:19269825 original size:24 final size:25
Alignment explanation
Indices: 19269782--19269831 Score: 75
Period size: 24 Copynumber: 2.0 Consensus size: 25
19269772 ATTATTTTCA
* *
19269782 TTTTATTTTATTTTTTATTA-TATT
1 TTTTATTTTATTTCTAATTATTATT
19269806 TTTTATTTTATTTCTAATTATTATT
1 TTTTATTTTATTTCTAATTATTATT
19269831 T
1 T
19269832 GTTCATACTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 18 0.78
25 5 0.22
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (25 bp):
TTTTATTTTATTTCTAATTATTATT
Found at i:19269976 original size:8 final size:8
Alignment explanation
Indices: 19269955--19270002 Score: 60
Period size: 8 Copynumber: 5.8 Consensus size: 8
19269945 TTATCATACA
19269955 ATTTCTTAT
1 ATTT-TTAT
*
19269964 TTTTTTAT
1 ATTTTTAT
19269972 ATTTTTAT
1 ATTTTTAT
19269980 ATTTTTATT
1 ATTTTTA-T
*
19269989 ATTATTAT
1 ATTTTTAT
19269997 ATTTTT
1 ATTTTT
19270003 TCGTAAGCAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
8 24 0.71
9 10 0.29
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.75
Consensus pattern (8 bp):
ATTTTTAT
Found at i:19269984 original size:17 final size:18
Alignment explanation
Indices: 19269955--19270003 Score: 59
Period size: 17 Copynumber: 2.8 Consensus size: 18
19269945 TTATCATACA
19269955 ATTTCTTAT-TTTTTTA-T
1 ATTT-TTATATTTTTTATT
19269972 ATTTTTATA-TTTTTATT
1 ATTTTTATATTTTTTATT
*
19269989 ATTATTATATTTTTT
1 ATTTTTATATTTTTT
19270004 CGTAAGCAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
16 10 0.36
17 13 0.46
18 5 0.18
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (18 bp):
ATTTTTATATTTTTTATT
Found at i:19269996 original size:25 final size:25
Alignment explanation
Indices: 19269955--19270002 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
19269945 TTATCATACA
*
19269955 ATTTCTTATTTTTTTATATTTTTAT
1 ATTTCTTATTTTATTATATTTTTAT
19269980 ATTT-TTATTATTATTATATTTTT
1 ATTTCTTATT-TTATTATATTTTT
19270003 TCGTAAGCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 5 0.24
25 16 0.76
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.75
Consensus pattern (25 bp):
ATTTCTTATTTTATTATATTTTTAT
Found at i:19285390 original size:21 final size:21
Alignment explanation
Indices: 19285366--19285414 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
19285356 CTTGGGCATT
*
19285366 TTGTT-TGCTAAGTATGGATAC
1 TTGTTATGC-AAGTATCGATAC
*
19285387 TTGTTATTCAAGTATCGATAC
1 TTGTTATGCAAGTATCGATAC
*
19285408 TTCTTAT
1 TTGTTAT
19285415 AAAACCTAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 22 0.92
22 2 0.08
ACGTcount: A:0.24, C:0.12, G:0.16, T:0.47
Consensus pattern (21 bp):
TTGTTATGCAAGTATCGATAC
Found at i:19286111 original size:62 final size:62
Alignment explanation
Indices: 19286005--19286174 Score: 168
Period size: 62 Copynumber: 2.7 Consensus size: 62
19285995 AGAAGTATTG
* * * * *
19286005 AGACATAAGCAAA-CAAAAACATTTTGTTTGAC-AAGGTATTGAGACCTCACTTGCAAGAATTA
1 AGACATGAG-AAATCAAAAGCATTTTGTGTGACGAA-GTATCGAGACCTCACTTACAAGAATTA
* * * *
19286067 AGACATGAGGAAAT-AGAAGCATTTTGTGT-ATTGAAGTATCGAGACCTCACTTACAAGTATTG
1 AGACATGA-GAAATCAAAAGCATTTTGTGTGA-CGAAGTATCGAGACCTCACTTACAAGAATTA
* * *
19286129 AGACTTGAGAAGTCAAAAGCATTTTGTGTGACGAATTATCGAGACC
1 AGACATGAGAAATCAAAAGCATTTTGTGTGACGAAGTATCGAGACC
19286175 ATACTTGGAT
Statistics
Matches: 88, Mismatches: 14, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
61 5 0.06
62 79 0.90
63 4 0.05
ACGTcount: A:0.38, C:0.15, G:0.21, T:0.27
Consensus pattern (62 bp):
AGACATGAGAAATCAAAAGCATTTTGTGTGACGAAGTATCGAGACCTCACTTACAAGAATTA
Found at i:19288965 original size:113 final size:113
Alignment explanation
Indices: 19288747--19289066 Score: 300
Period size: 113 Copynumber: 2.8 Consensus size: 113
19288737 GTGTTGTGCG
* ** *
19288747 TGACTAGATTTTGGCATGGGGTCACTTAGGGTGTGTGTGATTGCATTAGGGTTTAACATTACGTG
1 TGACTAGATTTTGGCATGGGG----TTAAGGTGTGCATGATTGCATTAGGGTTTAACATTGCGTG
* * * * * * * *
19288812 AGTGTTTTATATGTGAATGCGTGACATATTAATAAGTCATTGCATTACAGCA
62 ATTGATTGATAGGTCATTGCGTGACATATTAATAAATCATTGCATGACAGCA
* *
19288864 TGACTAGATTTTGGCATGGGGTTAAGGTGTGCATGATTGCTTTAGGGTTGAACATTGCGTGATTG
1 TGACTAGATTTTGGCATGGGGTTAAGGTGTGCATGATTGCATTAGGGTTTAACATTGCGTGATTG
* * * * *
19288929 GTTGATAGGTCATTGCGTTACCTATTGATAAATCATTGCGTGACAGCA
66 ATTGATAGGTCATTGCGTGACATATTAATAAATCATTGCATGACAGCA
** ** * * * *
19288977 TGACTAGATTGAGGCATGGCATCACTTATA-CTCTGCATGATTGCGTAAGGGTTTAACATTGCGT
1 TGACTAGATTTTGGCATGG----GGTTA-AGGTGTGCATGATTGCATTAGGGTTTAACATTGCGT
*
19289041 GATTGATTGATAGGTCTTTGCGTGAC
61 GATTGATTGATAGGTCATTGCGTGAC
19289067 TGGTTTATAG
Statistics
Matches: 168, Mismatches: 30, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
113 91 0.54
117 76 0.45
118 1 0.01
ACGTcount: A:0.24, C:0.13, G:0.28, T:0.36
Consensus pattern (113 bp):
TGACTAGATTTTGGCATGGGGTTAAGGTGTGCATGATTGCATTAGGGTTTAACATTGCGTGATTG
ATTGATAGGTCATTGCGTGACATATTAATAAATCATTGCATGACAGCA
Found at i:19289076 original size:23 final size:23
Alignment explanation
Indices: 19289035--19289078 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
19289025 GGGTTTAACA
*
19289035 TTGCGTGATTGATTGATAGGTCT
1 TTGCGTGACTGATTGATAGGTCT
* *
19289058 TTGCGTGACTGGTTTATAGGT
1 TTGCGTGACTGATTGATAGGT
19289079 TATTGAGTGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.16, C:0.09, G:0.32, T:0.43
Consensus pattern (23 bp):
TTGCGTGACTGATTGATAGGTCT
Found at i:19293017 original size:26 final size:26
Alignment explanation
Indices: 19292955--19293017 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
19292945 AACATTGTTC
* *
19292955 TGTATCATGTCCATATTATTCTTTGT
1 TGTATCATTTACATATTATTCTTTGT
* *
19292981 TGTATCATTTACATATTTTTCTTTTT
1 TGTATCATTTACATATTATTCTTTGT
*
19293007 TGTATCCTTTA
1 TGTATCATTTA
19293018 ACAAAAAAGA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.19, C:0.14, G:0.08, T:0.59
Consensus pattern (26 bp):
TGTATCATTTACATATTATTCTTTGT
Done.