Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38630433
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 2298367 characters in sequence are not A, C, G, or T
File 17 of 97
Found at i:7973059 original size:2 final size:2
Alignment explanation
Indices: 7973052--7973092 Score: 64
Period size: 2 Copynumber: 20.5 Consensus size: 2
7973042 TGACAGAGTG
* *
7973052 GA GA GA GA GA GA GA GC GA GA GA GA GC GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
7973093 TGTGTGTGCC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.44, C:0.05, G:0.51, T:0.00
Consensus pattern (2 bp):
GA
Found at i:7981299 original size:16 final size:16
Alignment explanation
Indices: 7981245--7981303 Score: 52
Period size: 16 Copynumber: 3.7 Consensus size: 16
7981235 CCTTCTCTCA
7981245 TTAAATTAAAATGAAT
1 TTAAATTAAAATGAAT
*
7981261 TTAAAATTTAAA--AAT
1 TT-AAATTAAAATGAAT
*
7981276 TAAAAAATTAAAATGAAT
1 T--TAAATTAAAATGAAT
7981294 TTAAA-TAAAA
1 TTAAATTAAAA
7981304 AGGTTTAAGT
Statistics
Matches: 34, Mismatches: 4, Indels: 11
0.69 0.08 0.22
Matches are distributed among these distances:
15 9 0.26
16 13 0.38
17 8 0.24
18 4 0.12
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (16 bp):
TTAAATTAAAATGAAT
Found at i:7981436 original size:43 final size:41
Alignment explanation
Indices: 7981377--7981504 Score: 100
Period size: 43 Copynumber: 3.1 Consensus size: 41
7981367 AATTTTAATT
* *
7981377 ATAATTTTTTATTATTTTAATATTTTAAAATTAAAAATAAA
1 ATAATATTTTAATATTTTAATATTTTAAAATTAAAAATAAA
* ** *
7981418 ATAATGNATTTTAATATTTT-TTAAATTAAAAATAAATGAATAAA
1 ATAAT--ATTTTAATATTTTAATATTTTAAAATTAAA--AATAAA
* * * *
7981462 ATTAATATTTTAAT-TATAAATATTTT-AATTTAAAAATTAA
1 A-TAATATTTTAATATTTTAATATTTTAAAATTAAAAATAAA
7981502 ATA
1 ATA
7981505 TTACAATAAA
Statistics
Matches: 67, Mismatches: 14, Indels: 14
0.71 0.15 0.15
Matches are distributed among these distances:
39 2 0.03
40 6 0.09
41 5 0.07
42 20 0.30
43 23 0.34
44 7 0.10
45 4 0.06
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (41 bp):
ATAATATTTTAATATTTTAATATTTTAAAATTAAAAATAAA
Found at i:7981467 original size:35 final size:36
Alignment explanation
Indices: 7981393--7981472 Score: 94
Period size: 35 Copynumber: 2.3 Consensus size: 36
7981383 TTTTATTATT
* **
7981393 TTAATA-TTTTAAAATTAAAAATAAAATAATGNATT
1 TTAATATTTTTAAAATTAAAAATAAAATAATGAAAA
*
7981428 TTAATATTTTTTAAATTAAAAAT-AAATGAAT-AAAA
1 TTAATATTTTTAAAATTAAAAATAAAAT-AATGAAAA
7981463 TTAATATTTT
1 TTAATATTTT
7981473 AATTATAAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
35 21 0.54
36 18 0.46
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (36 bp):
TTAATATTTTTAAAATTAAAAATAAAATAATGAAAA
Found at i:7981485 original size:15 final size:14
Alignment explanation
Indices: 7981465--7981495 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
7981455 GAATAAAATT
7981465 AATATTTTAATTATA
1 AATATTTTAATT-TA
7981480 AATATTTTAATTTA
1 AATATTTTAATTTA
7981494 AA
1 AA
7981496 AATTAAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.25
15 12 0.75
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
AATATTTTAATTTA
Found at i:7984895 original size:107 final size:107
Alignment explanation
Indices: 7984662--7984869 Score: 283
Period size: 107 Copynumber: 2.0 Consensus size: 107
7984652 CTGTGCCTAC
* * *
7984662 AGAGGAAGCAAATACTTCCACCCAGGTAAGCATGCTTGCCATTCTTAGTTCTTTTCGTAGTGGCC
1 AGAGGAAGCAAATCCTTCCACCCAGGTAAGCATGCTTCCCATTCTTAGTTATTTTCGTAGTGGCC
* ** *
7984727 AAATATGCATTAGGTCTGAACCATGGGTTGCTTGTTTCCTAT
66 AAATATCCACCAGGTCTGAACCATGGGTTGCTTGTTTCATAT
* * * * *
7984769 AGAGGAAGCAAATTCTTCCACCTAGGTAGGCCTGCTTCCCATTCTTAGTTATTTTTGTAGTGG-C
1 AGAGGAAGCAAATCCTTCCACCCAGGTAAGCATGCTTCCCATTCTTAGTTATTTTCGTAGTGGCC
* *
7984833 ATATATCCACCAGGTTTGAACCATGGGTTGCTTGTTT
66 AAATATCCACCAGGTCTGAACCATGGGTTGCTTGTTT
7984870 GATTAAGGTC
Statistics
Matches: 89, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
106 33 0.37
107 56 0.63
ACGTcount: A:0.23, C:0.21, G:0.22, T:0.34
Consensus pattern (107 bp):
AGAGGAAGCAAATCCTTCCACCCAGGTAAGCATGCTTCCCATTCTTAGTTATTTTCGTAGTGGCC
AAATATCCACCAGGTCTGAACCATGGGTTGCTTGTTTCATAT
Found at i:7986191 original size:78 final size:77
Alignment explanation
Indices: 7985960--7986202 Score: 310
Period size: 76 Copynumber: 3.2 Consensus size: 77
7985950 AAGCTTTGAC
* * *
7985960 TGGTTACGAAATGAAATGGCTTTTTGTTGCAGACAGAGTAGCTTGTCAAGAGAAT-GAGGATTTG
1 TGGTTATGAAATGAAATGGCTTTTTGTTGCAGACAGAGTAGCTTATCAAGAG-ATGGAGGATTTA
7986024 ACT-AGCTTCCCA
65 ACTAAGCTTCCCA
* * * * * *
7986036 TGGTTATAAAAGGAAATCGCTTTTTGTTGCAGAGAGAGTAGCTTATGAAGAGAGGGAGGATTTAA
1 TGGTTATGAAATGAAATGGCTTTTTGTTGCAGACAGAGTAGCTTATCAAGAGATGGAGGATTTAA
*
7986101 CTAGGCTTCCCA
66 CTAAGCTTCCCA
* * * * *
7986113 TGGTTATGAAATGAAATGGCGTCTTGTTGCAAGACAAAGTAACTTATCAAAAGATGGAGGATTTA
1 TGGTTATGAAATGAAATGGCTTTTTGTTGC-AGACAGAGTAGCTTATCAAGAGATGGAGGATTTA
7986178 ACTAAGCTTCCCA
65 ACTAAGCTTCCCA
*
7986191 TGGTTGTGAAAT
1 TGGTTATGAAAT
7986203 TTGTGATTGC
Statistics
Matches: 141, Mismatches: 23, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
75 1 0.01
76 56 0.40
77 33 0.23
78 51 0.36
ACGTcount: A:0.32, C:0.13, G:0.26, T:0.30
Consensus pattern (77 bp):
TGGTTATGAAATGAAATGGCTTTTTGTTGCAGACAGAGTAGCTTATCAAGAGATGGAGGATTTAA
CTAAGCTTCCCA
Found at i:7991580 original size:44 final size:44
Alignment explanation
Indices: 7991531--7991644 Score: 133
Period size: 46 Copynumber: 2.5 Consensus size: 44
7991521 TCAAAATGAC
*
7991531 TTTTATTATAATTAAATAATATTTTCACCAAAAAATAA-ACACAT
1 TTTTATTATAATTAAATAATATTTTCACCAAAAAATAATAAAC-T
* ** *
7991575 TTTTATTATAA-TATAATAATATTTTTTATTAAAAGATAATTAAACT
1 TTTTATTATAATTA-AATAATA-TTTTCACCAAAAAATAA-TAAACT
7991621 TTTTATTATAATTAAATAATATTT
1 TTTTATTATAATTAAATAATATTT
7991645 AATATTAAAA
Statistics
Matches: 60, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
43 2 0.03
44 18 0.30
45 16 0.27
46 19 0.32
47 5 0.08
ACGTcount: A:0.46, C:0.05, G:0.01, T:0.47
Consensus pattern (44 bp):
TTTTATTATAATTAAATAATATTTTCACCAAAAAATAATAAACT
Found at i:7991600 original size:23 final size:23
Alignment explanation
Indices: 7991574--7991644 Score: 83
Period size: 23 Copynumber: 3.1 Consensus size: 23
7991564 AATAAACACA
7991574 TTTTTATTATAATATAATAATAT
1 TTTTTATTATAATATAATAATAT
* * *
7991597 TTTTTATTAAAAGATAATTAA-AC
1 TTTTTATTATAATATAA-TAATAT
7991620 TTTTTATTATAAT-TAAATAATAT
1 TTTTTATTATAATAT-AATAATAT
7991643 TT
1 TT
7991645 AATATTAAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
22 4 0.10
23 32 0.82
24 3 0.08
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.54
Consensus pattern (23 bp):
TTTTTATTATAATATAATAATAT
Found at i:7991743 original size:45 final size:45
Alignment explanation
Indices: 7991682--7991775 Score: 116
Period size: 45 Copynumber: 2.1 Consensus size: 45
7991672 ATTAAATTTA
** * * *
7991682 AATAATACTAAATAATATTTTTTATTACATTTATTATATTCAAAT
1 AATAATACTAAATAATATGCTTTATAACATTTATTATAATAAAAT
* * *
7991727 AATAATATTAAGTAATATGCTTTATAATATTTATTATAATAAAAT
1 AATAATACTAAATAATATGCTTTATAACATTTATTATAATAAAAT
7991772 AATA
1 AATA
7991776 TTAATATATT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (45 bp):
AATAATACTAAATAATATGCTTTATAACATTTATTATAATAAAAT
Found at i:7993427 original size:15 final size:14
Alignment explanation
Indices: 7993409--7993485 Score: 63
Period size: 15 Copynumber: 5.4 Consensus size: 14
7993399 TTTAGATTAT
7993409 TTATAAATTTTATAA
1 TTATAAATTTTA-AA
*
7993424 TTATAAA--TAAAA
1 TTATAAATTTTAAA
7993436 TTTATAAATTTTAATA
1 -TTATAAATTTTAA-A
*
7993452 TTATAAA--TAAAA
1 TTATAAATTTTAAA
7993464 TTTATAAATTTTAATA
1 -TTATAAATTTTAA-A
7993480 TTATAA
1 TTATAA
7993486 TTTATAAAAA
Statistics
Matches: 50, Mismatches: 4, Indels: 16
0.71 0.06 0.23
Matches are distributed among these distances:
12 3 0.06
13 19 0.38
15 26 0.52
16 2 0.04
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
TTATAAATTTTAAA
Found at i:7993439 original size:28 final size:28
Alignment explanation
Indices: 7993407--7993485 Score: 142
Period size: 28 Copynumber: 2.8 Consensus size: 28
7993397 TATTTAGATT
7993407 ATTTATAAATTTT-ATAATTATAAATAAA
1 ATTTATAAATTTTAAT-ATTATAAATAAA
7993435 ATTTATAAATTTTAATATTATAAATAAA
1 ATTTATAAATTTTAATATTATAAATAAA
7993463 ATTTATAAATTTTAATATTATAA
1 ATTTATAAATTTTAATATTATAA
7993486 TTTATAAAAA
Statistics
Matches: 50, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
28 48 0.96
29 2 0.04
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (28 bp):
ATTTATAAATTTTAATATTATAAATAAA
Found at i:7993440 original size:13 final size:13
Alignment explanation
Indices: 7993424--7993472 Score: 62
Period size: 13 Copynumber: 3.6 Consensus size: 13
7993414 AATTTTATAA
7993424 TTATAAATAAAAT
1 TTATAAATAAAAT
**
7993437 TTATAAATTTTAAT
1 TTATAAA-TAAAAT
7993451 ATTATAAATAAAAT
1 -TTATAAATAAAAT
7993465 TTATAAAT
1 TTATAAAT
7993473 TTTAATATTA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
13 15 0.50
14 8 0.27
15 7 0.23
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (13 bp):
TTATAAATAAAAT
Found at i:8006976 original size:16 final size:17
Alignment explanation
Indices: 8006950--8006983 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
8006940 ATTTTTGGTC
8006950 ATTGCATTTAGGATTCA
1 ATTGCATTTAGGATTCA
8006967 ATTG-ATTTAGGATTCA
1 ATTGCATTTAGGATTCA
8006983 A
1 A
8006984 ACAAGAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.32, C:0.09, G:0.18, T:0.41
Consensus pattern (17 bp):
ATTGCATTTAGGATTCA
Found at i:8012885 original size:25 final size:25
Alignment explanation
Indices: 8012837--8012885 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
8012827 ATTGGACACG
* *
8012837 TGGGCCAGCAGACAGGCAGTGTGCC
1 TGGGCCAGCAGACAGACAGGGTGCC
* *
8012862 TGGGCCAGCAGGCAGACGGGGTGC
1 TGGGCCAGCAGACAGACAGGGTGC
8012886 GCAGGCGTGC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.18, C:0.27, G:0.45, T:0.10
Consensus pattern (25 bp):
TGGGCCAGCAGACAGACAGGGTGCC
Found at i:8018059 original size:14 final size:14
Alignment explanation
Indices: 8018014--8018060 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
8018004 CAACCGATGG
8018014 AATTAAGAAGCTCA
1 AATTAAGAAGCTCA
* * *
8018028 AATT-ATAAGGTTA
1 AATTAAGAAGCTCA
8018041 AATTAAGAAGCTCA
1 AATTAAGAAGCTCA
8018055 AATTAA
1 AATTAA
8018061 TTTGTAACAT
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
13 10 0.38
14 16 0.62
ACGTcount: A:0.51, C:0.09, G:0.13, T:0.28
Consensus pattern (14 bp):
AATTAAGAAGCTCA
Found at i:8018394 original size:30 final size:30
Alignment explanation
Indices: 8018360--8018456 Score: 149
Period size: 30 Copynumber: 3.2 Consensus size: 30
8018350 GCGAGCCACC
* *
8018360 ACCATGGTGACCAGGACCGCCTGCTGGAGG
1 ACCATGGTGACCCGGACCACCTGCTGGAGG
8018390 ACCATGGTGACCCGGACCACCTGCTGGAGG
1 ACCATGGTGACCCGGACCACCTGCTGGAGG
* *
8018420 TCCATGCTGACCCGGACCACCTGCTGGAGG
1 ACCATGGTGACCCGGACCACCTGCTGGAGG
*
8018450 TCCATGG
1 ACCATGG
8018457 CCCCCCTCCG
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 62 1.00
ACGTcount: A:0.19, C:0.33, G:0.33, T:0.15
Consensus pattern (30 bp):
ACCATGGTGACCCGGACCACCTGCTGGAGG
Found at i:8018518 original size:30 final size:30
Alignment explanation
Indices: 8018478--8018566 Score: 115
Period size: 30 Copynumber: 3.0 Consensus size: 30
8018468 GCCACAACCA
* * *
8018478 TGACCAGGACCGCCTGCTGGAGGTCCATGT
1 TGACCCGGACCACCTGCTGGAGGTCCATGC
* **
8018508 TGGCCCGGACCACCTGGAGGAGGTCCATGC
1 TGACCCGGACCACCTGCTGGAGGTCCATGC
*
8018538 TGACCGGGACCACCTGCTGGAGGTCCATG
1 TGACCCGGACCACCTGCTGGAGGTCCATG
8018567 GTGTCCACCG
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 49 1.00
ACGTcount: A:0.17, C:0.31, G:0.35, T:0.17
Consensus pattern (30 bp):
TGACCCGGACCACCTGCTGGAGGTCCATGC
Found at i:8018534 original size:111 final size:111
Alignment explanation
Indices: 8018367--8018567 Score: 348
Period size: 111 Copynumber: 1.8 Consensus size: 111
8018357 ACCACCATGG
*
8018367 TGACCAGGACCGCCTGCTGGAGGACCATGGTGACCCGGACCACCTGCTGGAGGTCCATGCTGACC
1 TGACCAGGACCGCCTGCTGGAGGACCATGGTGACCCGGACCACCTGCAGGAGGTCCATGCTGACC
8018432 CGGACCACCTGCTGGAGGTCCATGGCCCCCCTCCGGGCCACAACCA
66 CGGACCACCTGCTGGAGGTCCATGGCCCCCCTCCGGGCCACAACCA
* * * *
8018478 TGACCAGGACCGCCTGCTGGAGGTCCATGTTGGCCCGGACCACCTGGAGGAGGTCCATGCTGACC
1 TGACCAGGACCGCCTGCTGGAGGACCATGGTGACCCGGACCACCTGCAGGAGGTCCATGCTGACC
*
8018543 GGGACCACCTGCTGGAGGTCCATGG
66 CGGACCACCTGCTGGAGGTCCATGG
8018568 TGTCCACCGT
Statistics
Matches: 84, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
111 84 1.00
ACGTcount: A:0.17, C:0.35, G:0.32, T:0.15
Consensus pattern (111 bp):
TGACCAGGACCGCCTGCTGGAGGACCATGGTGACCCGGACCACCTGCAGGAGGTCCATGCTGACC
CGGACCACCTGCTGGAGGTCCATGGCCCCCCTCCGGGCCACAACCA
Found at i:8040898 original size:40 final size:40
Alignment explanation
Indices: 8040810--8040898 Score: 92
Period size: 40 Copynumber: 2.2 Consensus size: 40
8040800 AATACTTGAA
*
8040810 GAAAGGA-TGTGTATCAATTTGCTCCTGAAAGAGCATAGG
1 GAAAGGAGTGCGTATCAATTTGCTCCTGAAAGAGCATAGG
* * * ** *
8040849 GAGAA-GAGTGCGTATGAATTTGCTTCTGGAAGAGTGTATG
1 GA-AAGGAGTGCGTATCAATTTGCTCCTGAAAGAGCATAGG
8040889 GAAAGGAGTG
1 GAAAGGAGTG
8040899 ATTCTATTTA
Statistics
Matches: 40, Mismatches: 7, Indels: 5
0.77 0.13 0.10
Matches are distributed among these distances:
39 6 0.15
40 34 0.85
ACGTcount: A:0.31, C:0.09, G:0.34, T:0.26
Consensus pattern (40 bp):
GAAAGGAGTGCGTATCAATTTGCTCCTGAAAGAGCATAGG
Found at i:8049149 original size:15 final size:15
Alignment explanation
Indices: 8049119--8049160 Score: 54
Period size: 13 Copynumber: 3.0 Consensus size: 15
8049109 AATTTAAAAA
*
8049119 ATATATAA-ACTAAT
1 ATATATAATATTAAT
8049133 AT-TAT-ATATTAAT
1 ATATATAATATTAAT
8049146 ATATATAATATTAAT
1 ATATATAATATTAAT
8049161 TTGATCTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
12 1 0.04
13 10 0.42
14 5 0.21
15 8 0.33
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (15 bp):
ATATATAATATTAAT
Found at i:8053173 original size:25 final size:25
Alignment explanation
Indices: 8053145--8053196 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
8053135 TATATATATA
8053145 TATATATAAAGGAAATATATTAATT
1 TATATATAAAGGAAATATATTAATT
8053170 TATATATAAAGGAAATATATTAATT
1 TATATATAAAGGAAATATATTAATT
8053195 TA
1 TA
8053197 AATCAATGAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.40
Consensus pattern (25 bp):
TATATATAAAGGAAATATATTAATT
Found at i:8055585 original size:39 final size:39
Alignment explanation
Indices: 8055542--8055636 Score: 104
Period size: 39 Copynumber: 2.4 Consensus size: 39
8055532 ATGTTATTTT
* *
8055542 CATGATAAACATGTTCTTAC-ATAAT-CAACTTATTCTTTC
1 CATGATAAATATGTTCTT-CTATAATAC-ACTTATTCTTCC
* * *
8055581 CATGATGAATATGCTCTTCTATAATACACTTGTTCTTCC
1 CATGATAAATATGTTCTTCTATAATACACTTATTCTTCC
*
8055620 CATGATAATTATGTTCT
1 CATGATAAATATGTTCT
8055637 CCCCATATGT
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
38 1 0.02
39 44 0.96
40 1 0.02
ACGTcount: A:0.29, C:0.20, G:0.08, T:0.42
Consensus pattern (39 bp):
CATGATAAATATGTTCTTCTATAATACACTTATTCTTCC
Found at i:8062441 original size:2 final size:2
Alignment explanation
Indices: 8062436--8062471 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
8062426 ACCTTTTTTA
8062436 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8062472 GTGTGTGTGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8062521 original size:2 final size:2
Alignment explanation
Indices: 8062516--8062551 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
8062506 TCCCTTTTTA
8062516 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8062552 GTGTGTGTGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8064894 original size:3 final size:3
Alignment explanation
Indices: 8064886--8064922 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
8064876 GTATTATAAA
*
8064886 ATT ATT ATT ATT ATT ATT ATT GTT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
8064923 AGAGATATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:8065402 original size:17 final size:17
Alignment explanation
Indices: 8065380--8065420 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
8065370 GCTATAGCAA
8065380 AATTTTTA-TAAATTAAT
1 AATTTTTATTAAA-TAAT
8065397 AATTTTTATTAAATAAT
1 AATTTTTATTAAATAAT
8065414 -ATTTTTA
1 AATTTTTA
8065421 GTCAGTTTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.30
17 12 0.52
18 4 0.17
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
AATTTTTATTAAATAAT
Found at i:8067481 original size:14 final size:15
Alignment explanation
Indices: 8067462--8067497 Score: 65
Period size: 14 Copynumber: 2.5 Consensus size: 15
8067452 TATATATATG
8067462 TATTATAGAATAA-T
1 TATTATAGAATAACT
8067476 TATTATAGAATAACT
1 TATTATAGAATAACT
8067491 TATTATA
1 TATTATA
8067498 CACATATGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 13 0.62
15 8 0.38
ACGTcount: A:0.47, C:0.03, G:0.06, T:0.44
Consensus pattern (15 bp):
TATTATAGAATAACT
Found at i:8068152 original size:16 final size:16
Alignment explanation
Indices: 8068090--8068152 Score: 58
Period size: 16 Copynumber: 4.0 Consensus size: 16
8068080 ATTTAAGATT
*
8068090 TTATATAAAAAAT-AA
1 TTATATAAAATATAAA
8068105 TTATATAAAATTATAAA
1 TTATATAAAA-TATAAA
* * *
8068122 TT-TATATATTTTAAA
1 TTATATAAAATATAAA
*
8068137 TTATATATAATATAAA
1 TTATATAAAATATAAA
8068153 AAAGGCATTA
Statistics
Matches: 39, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
15 17 0.44
16 18 0.46
17 4 0.10
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
TTATATAAAATATAAA
Found at i:8068489 original size:15 final size:15
Alignment explanation
Indices: 8068471--8068507 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
8068461 AAAAATAAAA
8068471 AAAATTATAATTTGT
1 AAAATTATAATTTGT
* *
8068486 AAAATGATAATTTTT
1 AAAATTATAATTTGT
8068501 AAAATTA
1 AAAATTA
8068508 ATGAAATGTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.43
Consensus pattern (15 bp):
AAAATTATAATTTGT
Found at i:8072607 original size:3 final size:3
Alignment explanation
Indices: 8072601--8072625 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
8072591 CACCACCCAG
8072601 AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA A
8072626 AAAAAGCAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:8084746 original size:2 final size:2
Alignment explanation
Indices: 8084741--8084769 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
8084731 TGTGTGTGAT
8084741 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
8084770 AAGGTGGCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:8096301 original size:25 final size:24
Alignment explanation
Indices: 8096251--8096301 Score: 57
Period size: 25 Copynumber: 2.1 Consensus size: 24
8096241 ACATAGAATG
* * *
8096251 AAAAAATATATTTATAATAATTTT
1 AAAAAATATATATAAAATAATATT
*
8096275 AAAATAATATATATAAAATAGTATT
1 AAAA-AATATATATAAAATAATATT
8096300 AA
1 AA
8096302 TATATAAAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
24 4 0.18
25 18 0.82
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (24 bp):
AAAAAATATATATAAAATAATATT
Found at i:8097417 original size:22 final size:22
Alignment explanation
Indices: 8097384--8097448 Score: 76
Period size: 22 Copynumber: 3.0 Consensus size: 22
8097374 TCATATCAAC
*
8097384 CAATCATGCAATACCTAAAAAT
1 CAATCATACAATACCTAAAAAT
* * *
8097406 CAGTTATACAATACTTAAAAAT
1 CAATCATACAATACCTAAAAAT
* *
8097428 CAATCATGCAATGCCTAAAAA
1 CAATCATACAATACCTAAAAA
8097449 CCACTAAAAC
Statistics
Matches: 34, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.49, C:0.20, G:0.06, T:0.25
Consensus pattern (22 bp):
CAATCATACAATACCTAAAAAT
Found at i:8108490 original size:251 final size:251
Alignment explanation
Indices: 8108066--8111159 Score: 2645
Period size: 251 Copynumber: 12.4 Consensus size: 251
8108056 TTCCTTAACT
* *
8108066 ACCTTTATAATGTTTTACGTTAATTCTTATCACTTTATGTCAAA-GTTTTTCAACAACTAAATTT
1 ACCTTTATAATGTTTTACGTTAATTCTTATCACTTTATGACAAAGGTTTTTCAACTACT-AATTT
* * * * * *
8108130 T-ACCATAATTCTATTTATCCTTACTATTATTTACGCATA-AGTTAACATTTGTAAGCTGTAAAT
65 TCACCATAATTCTTTTTATCTTTACTATTATTCACGCATAGA-TTAAAATTTGTAAGCCGTAAAA
* * *
8108193 CACTTTAAACTTAAGAATAAAAATTTAACTGTTTAA-TTTCTCAAAAATTATGTTTATTTGACAT
129 CACTTTAAACTAAAGAAT-AAAATTTAAATGTTTAATTTTTTCAAAAATTATGTTTATTTGACAT
* *
8108257 AATTGACTTGTTACATTAAATCTCACATATTTACGTCAATATTTTGA-ACATGCTTGTATC
193 AATTGACTTGTTACGTTAAATCTCACACATTTACGTCAATATTTTGACA-ATGCTTGT-TC
* ** * *
8108317 ACCTTTATAATATTTTACGTTAATTCTTATCGTTTTATGACAAAGCTTTTT-AAATACTAATTTT
1 ACCTTTATAATGTTTTACGTTAATTCTTATCACTTTATGACAAAGGTTTTTCAACTACTAATTTT
* * * *
8108381 CATCATAATTTTTTTTATCTTTACTATTATTCACGTATAAATTAAAATTTGTAAGCCGTAAAACA
66 CACCATAATTCTTTTTATCTTTACTATTATTCACGCATAGATTAAAATTTGTAAGCCGTAAAACA
* *
8108446 CTTTAAACTAAAGAA-AATAATTTTAATGTTTAATTTTTTCAAAAATTATGTTTATTTGATATAA
131 CTTTAAACTAAAGAATAA-AATTTAAATGTTTAATTTTTTCAAAAATTATGTTTATTTGACATAA
* * * * ** **
8108510 TTGACTTATTATGTTATAA-CTCATACATTTATGTCAATATTTTGACAATTTTTAATC
195 TTGACTTGTTACGTTA-AATCTCACACATTTACGTCAATATTTTGACAATGCTTGTTC
* * * ** *
8108567 TAACTTCATAATGTTTTACGTTAATTCTTACCACTTTATG-TTAAGGTTTTTCAACTACTGATTT
1 -ACCTTTATAATGTTTTACGTTAATTCTTATCACTTTATGACAAAGGTTTTTCAACTACTAATTT
** * * * *
8108631 T-TTCATAATTCTTTTTATCCTAACTATTATTCGCGCATAGATAAAAATTTGTAAGCCGTAAAAC
65 TCACCATAATTCTTTTTATCTTTACTATTATTCACGCATAGATTAAAATTTGTAAGCCGTAAAAC
* ** *** ** *
8108695 ATTTTAAACTCGAGAATAACAATTTAAATGTTTAATTTCACCAAAAATTATGTTTAACTAACATA
130 ACTTTAAACTAAAGAATAA-AATTTAAATGTTTAATTTTTTCAAAAATTATGTTTATTTGACATA
* * ** * * * *
8108760 ATTGACATGGTATATTAAATCTCATATATTTACGTCAATATTTTGACAATACTTATTCC
194 ATTGACTTGTTACGTTAAATCTCACACATTTACGTCAATATTTTGACAATGCTTGTT-C
* * * * ** *
8108819 ACCATTATAATATTTTACGTTAATTATTACCACTTTATG-TTAAGGTTTTTCAACTACTAAATTT
1 ACCTTTATAATGTTTTACGTTAATTCTTATCACTTTATGACAAAGGTTTTTCAACTACTAATTTT
* * * * * *
8108883 CAACATAATTCTTTTAATCTTTACTATTTTTCACGCATATATTAAAATTTATAAGCTGTAAAACA
66 CACCATAATTCTTTTTATCTTTACTATTATTCACGCATAGATTAAAATTTGTAAGCCGTAAAACA
* * * * * *
8108948 CTTTAAAATTGAA-AATAAAAATTAAATGTTTAATTCTTCCAAAAAATT-T-TCTTATTTAACAT
131 CTTT-AAACTAAAGAATAAAATTTAAATGTTTAATTTTTTC-AAAAATTATGT-TTATTTGACAT
* * * *
8109010 AATTAACTTATTACGTTAAATCTCACACATTTACGTCAATATTTTGACAATTCTTATTTC
193 AATTGACTTGTTACGTTAAATCTCACACATTTACGTCAATATTTTGACAATGCTT-GTTC
* * ** * * * ** *
8109070 ACCTTTATAATATTTTACG-TAATTTTTATGGCTTTACGTC-ATGACTTTTCAACTA-TGAATTA
1 ACCTTTATAATGTTTTACGTTAATTCTTATCACTTTATGACAAAGGTTTTTCAACTACT-AATTT
* * ** * * *
8109132 TCACCATAATTCTTTATATCCTTACTATTATTCTTGTATAGATTAAAACTTG-AA--AGT----C
65 TCACCATAATTCTTTTTATCTTTACTATTATTCACGCATAGATTAAAATTTGTAAGCCGTAAAAC
*
8109190 A---T-AA--AAAG--------TTAAATGTTTAA-TTTTTCAAAAAATTATATTTATTTGACATA
130 ACTTTAAACTAAAGAATAAAATTTAAATGTTTAATTTTTTC-AAAAATTATGTTTATTTGACATA
* * *
8109240 ATTGACTTGTTATGTTAAATCTCACACATTATACGTCAATATGTTCACAATGCTTGTTCC
194 ATTGACTTGTTACGTTAAATCTCACACATT-TACGTCAATATTTTGACAATGCTTGTT-C
* * * * * * *
8109300 AGCTTTATAATATTTTACATTAATTCTTA-CGGCTTTACGTA-ATAA--CTTTTCAACTACAAAT
1 ACCTTTATAATGTTTTACGTTAATTCTTATC-ACTTTATG-ACA-AAGGTTTTTCAACTACTAAT
* * *** *
8109361 TTTCGCCATAATTCTTTATATCTTTACTATTATTCTTACATAGATTAAAATTTATAAGCCGTAAA
63 TTTCACCATAATTCTTTTTATCTTTACTATTATTCACGCATAGATTAAAATTTGTAAGCCGTAAA
* * *
8109426 ACATTTTAAACTCAAA-AATAAAAATTTAAATGTTTAATTTTCTCAAAAATTATTTTTATTTGAC
128 ACACTTTAAACT-AAAGAAT-AAAATTTAAATGTTTAATTTTTTCAAAAATTATGTTTATTTGAC
* * * *
8109490 ATAATTAACTTGTTACGTTAAATTTCACATATTTACATCAATATTTTGACAATGCTTGTTC
191 ATAATTGACTTGTTACGTTAAATCTCACACATTTACGTCAATATTTTGACAATGCTTGTTC
* * * * * * * *
8109551 TAACTTTATAATGTTTTACTTTTATTTTTA-CGGCTTTA-CATC-AAGATTTTTCAAATACTAAT
1 -ACCTTTATAATGTTTTACGTTAATTCTTATC-ACTTTATGA-CAAAGGTTTTTCAACTACTAAT
* * * * * * **
8109613 TTTCACCATAACTCTTTTTATCCTTACTATTATTTACACATGGAATAAAATTTGTCAA-CAATAA
63 TTTCACCATAATTCTTTTTATCTTTACTATTATTCACGCATAGATTAAAATTTGT-AAGCCGTAA
**
8109677 AACACTTTAAACTTGAGAATAAAGATTTAAATGTTTAATTTTTT-AGAAAATTATGTTTATTTGA
127 AACACTTTAAACTAAAGAATAAA-ATTTAAATGTTTAATTTTTTCA-AAAATTATGTTTATTTGA
* * * * * ** * *
8109741 TATAATTGAATTATTATGTTAAATCTCATACATTTATATTAGTATTTTGACAATGCTTGTTC
190 CATAATTGACTTGTTACGTTAAATCTCACACATTTACGTCAATATTTTGACAATGCTTGTTC
* * * * * *
8109803 TATCTTTATAATGTGTTACGTTAACTT-TTATCACTTAACGTC-AAGGTTTTTCAACTACTAAAT
1 -ACCTTTATAATGTTTTACGTTAA-TTCTTATCACTTTATGACAAAGGTTTTTCAACTACTAATT
* * * * * **
8109866 TTCATCATAATTCTTTTTATCTTTACT-GTACTCATGCATAGATTAAAATTTATAAGCTATAAAA
64 TTCACCATAATTCTTTTTATCTTTACTATTATTCACGCATAGATTAAAATTTGTAAGCCGTAAAA
** * * * *
8109930 CACTTTAAACTCGATAATAACAATTTAAATGTTTAATTTCTCCAAAAATTATATTTATTTGACAT
129 CACTTTAAACTAAAGAATAA-AATTTAAATGTTTAATTTTTTCAAAAATTATGTTTATTTGACAT
** * * *
8109995 AATTGACTTGTTACGTTAAATCTCACACATTTATATCAATATTTTGGCAATGTTTGCTC
193 AATTGACTTGTTACGTTAAATCTCACACATTTACGTCAATATTTTGACAATGCTTGTTC
* * * * * * *
8110054 TAACTTTATAATGTTTTATGTTAATTCTTACCACTTTACGTC-AAGATTTTTCAACTATTAATTT
1 -ACCTTTATAATGTTTTACGTTAATTCTTATCACTTTATGACAAAGGTTTTTCAACTACTAATTT
* ** * * * **
8110118 TCACTATAATTCTTTTTATCCTTTTTTATTATTCACGTATAGATTAAAGTTTGTAAACTATAAAA
65 TCACCATAATTCTTTTTAT-CTTTACTATTATTCACGCATAGATTAAAATTTGTAAGCCGTAAAA
* ** * * * * * * * * *
8110183 CACTTTAAATTTCGAGAATAACAATTTCAATGTTTAATGTCTCCGAAAACTATATTTATTTAATA
129 CACTTTAAA-CTAAAGAATAA-AATTTAAATGTTTAATTTTTTCAAAAATTATGTTTATTTGACA
* * *
8110248 TAATTGACTTGTTACGTTTAATCTCACACATTTACGTCGATATTTTAACAATGCTTGTTC
192 TAATTGACTTGTTACGTTAAATCTCACACATTTACGTCAATATTTTGACAATGCTTGTTC
* * * * *
8110308 -CAGTGTATAATGTTTTACATTAATTCTTA-CAACTTTA-CATC-AAGGTTTTTCAACTAATAAT
1 AC-CTTTATAATGTTTTACGTTAATTCTTATC-ACTTTATGA-CAAAGGTTTTTCAACTACTAAT
* * * *
8110369 TTTTACCATAATTCTTTTTATC-TTACTATTATTCATGTATAGATTAAAATTTATAAGCCGTAAA
63 TTTCACCATAATTCTTTTTATCTTTACTATTATTCACGCATAGATTAAAATTTGTAAGCCGTAAA
* * **
8110433 ATACTTTAAACTGAAA-AATAACAATTTAAACGTTTAATTTTTAAAAAAAATTATGTTTATTTGA
128 ACACTTTAAACT-AAAGAATAA-AATTTAAATGTTTAATTTTT-TCAAAAATTATGTTTATTTGA
* * * * *
8110497 CAGAATTAACTTGTTACGTTAAATCTCACACATTTACGTCAATATTTTAACAAAGTTTGTTCC
190 CATAATTGACTTGTTACGTTAAATCTCACACATTTACGTCAATATTTTGACAATGCTTGTT-C
** * * *
8110560 ACCTTTATAATGTTTTATATTAATTATTATCACTTTATGTC-AAGGTTTTTCAACTACTAAATTT
1 ACCTTTATAATGTTTTACGTTAATTCTTATCACTTTATGACAAAGGTTTTTCAACTACTAATTTT
* * ** * * * *
8110624 CAACATAATTCTTCTTATCTTTACTATTATTCATACATAGATTAAAGTTTATAAGCCATAAAATA
66 CACCATAATTCTTTTTATCTTTACTATTATTCACGCATAGATTAAAATTTGTAAGCCGTAAAACA
** * ** *
8110689 CTTTAAACCCAAGAATAAAAAGTTAAATGTTTAATTTTTTTTGAAAATTATGTTTATTTTACATA
131 CTTTAAACTAAAGAAT-AAAATTTAAATGTTTAA-TTTTTTCAAAAATTATGTTTATTTGACATA
* * * *
8110754 ATTGACTTATTACGTTAAATCTCACACATTTA-TTACAATACTTAGACAAT-CTTTGTTCC
194 ATTGACTTGTTACGTTAAATCTCACACATTTACGT-CAATATTTTGACAATGC-TTGTT-C
* * * * *
8110813 ACCTTTATAACGTTTTACGTTAATT-TTTTCGACTTTA-CATCATAA--CTTTTCAACTATTAAT
1 ACCTTTATAATGTTTTACGTTAATTCTTATC-ACTTTATGA-CA-AAGGTTTTTCAACTACTAAT
* * * * *** *
8110874 TTTTACCATAATTATTTATATCCTTACTATTATTCTTACTTAGATTAAAATTTGTAAGCCGTAAA
63 TTTCACCATAATTCTTTTTATCTTTACTATTATTCACGCATAGATTAAAATTTGTAAGCCGTAAA
* ** * * * * * *
8110939 ACAGTTTAAACTCGAGAATAAAAAGTTAAATGTATAATTTTCTCAAAAAATATATTTATTTGATA
128 ACACTTTAAACTAAAGAAT-AAAATTTAAATGTTTAATTTTTTCAAAAATTATGTTTATTTGACA
* * * * ** * * *
8111004 TAATTGATTTGTTGCATT-ATTCTCATGCATTTACGTTAATACTTTGACAATCCTTGTTCC
192 TAATTGACTTGTTACGTTAAATCTCACACATTTACGTCAATATTTTGACAATGCTTGTT-C
*** * *
8111064 ACCTTTATAATGTTTTACGTTAATTCTTAGGGCTTTACT-TC-AAGGTTTTTCAACTACTTATTT
1 ACCTTTATAATGTTTTACGTTAATTCTTATCACTTTA-TGACAAAGGTTTTTCAACTACTAATTT
* * *
8111127 TCACAATAATTCTTTTTGTCCTTACTATTATTC
65 TCACCATAATTCTTTTTATCTTTACTATTATTC
8111160 TTATGTTAAT
Statistics
Matches: 2338, Mismatches: 406, Indels: 198
0.79 0.14 0.07
Matches are distributed among these distances:
228 12 0.01
229 53 0.02
230 40 0.02
231 77 0.03
232 2 0.00
233 1 0.00
234 2 0.00
236 2 0.00
238 4 0.00
240 1 0.00
241 1 0.00
242 2 0.00
243 2 0.00
245 3 0.00
247 2 0.00
249 7 0.00
250 200 0.09
251 882 0.38
252 493 0.21
253 439 0.19
254 111 0.05
255 2 0.00
ACGTcount: A:0.35, C:0.14, G:0.07, T:0.44
Consensus pattern (251 bp):
ACCTTTATAATGTTTTACGTTAATTCTTATCACTTTATGACAAAGGTTTTTCAACTACTAATTTT
CACCATAATTCTTTTTATCTTTACTATTATTCACGCATAGATTAAAATTTGTAAGCCGTAAAACA
CTTTAAACTAAAGAATAAAATTTAAATGTTTAATTTTTTCAAAAATTATGTTTATTTGACATAAT
TGACTTGTTACGTTAAATCTCACACATTTACGTCAATATTTTGACAATGCTTGTTC
Found at i:8110371 original size:253 final size:252
Alignment explanation
Indices: 8109190--8111159 Score: 2019
Period size: 253 Copynumber: 7.8 Consensus size: 252
8109180 CTTGAAAGTC
* * *
8109190 ATAAAAAGTTAAATGTTTAATTTTTCAAAAAATTATATTTATTTGACATAATTGACTTGTTATGT
1 ATAAAAATTTAAATGTTTAATTTTTCCAAAAATTATATTTATTTGACATAATTGACTTGTTACGT
* * * * *
8109255 TAAATCTCACACATTATACGTCAATATGTTCACAATGCTTGTTCCAGCTTTATAATATTTTACAT
66 TAAATCTCACACATT-TACGTCAATATTTTGACAATGCTTGTTCCACCTTTATAATGTTTTACGT
* * * * * *
8109320 TAATTCTTACGGCTTTACGT-AATAACTTTTCAACTACAAATTTTCGCCATAATTCTTTATATCT
130 TAATTCTTACGACTTTACGTCAA-GATTTTTCAACTACTAATTTTCACCATAATTCTTTTTATCT
*** * * * *
8109384 TTACTATTATTCTTACATAGATTAAAATTTATAAGCCGTAAAACATTTTAAACTCAAAA
194 TTACTATTATTCACGCATAGATTAAAATTTATAAGCCATAAAACACTTTAAACTCGAGA
* *
8109443 ATAAAAATTTAAATGTTTAA-TTTTCTCAAAAATTATTTTTATTTGACATAATTAACTTGTTACG
1 ATAAAAATTTAAATGTTTAATTTTTC-CAAAAATTATATTTATTTGACATAATTGACTTGTTACG
* * * * * *
8109507 TTAAATTTCACATATTTACATCAATATTTTGACAATGCTTGTTCTAACTTTATAATGTTTTACTT
65 TTAAATCTCACACATTTACGTCAATATTTTGACAATGCTTGTTCCACCTTTATAATGTTTTACGT
* * * * * * *
8109572 TTATTTTTACGGCTTTACATCAAGATTTTTCAAATACTAATTTTCACCATAACTCTTTTTATCCT
130 TAATTCTTACGACTTTACGTCAAGATTTTTCAACTACTAATTTTCACCATAATTCTTTTTATCTT
* * * * * * *
8109637 TACTATTATTTACACATGGAATAAAATTTGTCAA-CAATAAAACACTTTAAACTTGAGA
195 TACTATTATTCACGCATAGATTAAAATTTAT-AAGCCATAAAACACTTTAAACTCGAGA
* * * * * * *
8109695 ATAAAGATTTAAATGTTTAATTTTT-TAGAAAATTATGTTTATTTGATATAATTGAATTATTATG
1 ATAAAAATTTAAATGTTTAATTTTTCCA-AAAATTATATTTATTTGACATAATTGACTTGTTACG
* ** * * * * *
8109759 TTAAATCTCATACATTTATATTAGTATTTTGACAATGCTTGTTCTATCTTTATAATGTGTTACGT
65 TTAAATCTCACACATTTACGTCAATATTTTGACAATGCTTGTTCCACCTTTATAATGTTTTACGT
* * * *
8109824 TAACTT-TTATC-ACTTAACGTCAAGGTTTTTCAACTACTAAATTTCATCATAATTCTTTTTATC
130 TAA-TTCTTA-CGACTTTACGTCAAGATTTTTCAACTACTAATTTTCACCATAATTCTTTTTATC
* * * * *
8109887 TTTACT-GTACTCATGCATAGATTAAAATTTATAAGCTATAAAACACTTTAAACTCGATA
193 TTTACTATTATTCACGCATAGATTAAAATTTATAAGCCATAAAACACTTTAAACTCGAGA
* *
8109946 ATAACAATTTAAATGTTTAATTTCTCCAAAAATTATATTTATTTGACATAATTGACTTGTTACGT
1 ATAAAAATTTAAATGTTTAATTTTTCCAAAAATTATATTTATTTGACATAATTGACTTGTTACGT
** * * * * * *
8110011 TAAATCTCACACATTTATATCAATATTTTGGCAATGTTTGCTCTAACTTTATAATGTTTTATGTT
66 TAAATCTCACACATTTACGTCAATATTTTGACAATGCTTGTTCCACCTTTATAATGTTTTACGTT
* * *
8110076 AATTCTTACCACTTTACGTCAAGATTTTTCAACTATTAATTTTCACTATAATTCTTTTTATCCTT
131 AATTCTTACGACTTTACGTCAAGATTTTTCAACTACTAATTTTCACCATAATTCTTTTTAT-CTT
** * * * * * *
8110141 TTTTATTATTCACGTATAGATTAAAGTTTGTAAACTATAAAACACTTTAAATTTCGAGA
195 TACTATTATTCACGCATAGATTAAAATTTATAAGCCATAAAACACTTTAAA-CTCGAGA
* * * * * * * *
8110200 ATAACAATTTCAATGTTTAATGTCTCCGAAAACTATATTTATTTAATATAATTGACTTGTTACGT
1 ATAAAAATTTAAATGTTTAATTTTTCCAAAAATTATATTTATTTGACATAATTGACTTGTTACGT
* * * * * *
8110265 TTAATCTCACACATTTACGTCGATATTTTAACAATGCTTGTTCCA-GTGTATAATGTTTTACATT
66 TAAATCTCACACATTTACGTCAATATTTTGACAATGCTTGTTCCACCTTTATAATGTTTTACGTT
* * * * *
8110329 AATTCTTACAACTTTACATCAAGGTTTTTCAACTAATAATTTTTACCATAATTCTTTTTATC-TT
131 AATTCTTACGACTTTACGTCAAGATTTTTCAACTACTAATTTTCACCATAATTCTTTTTATCTTT
* * * * *
8110393 ACTATTATTCATGTATAGATTAAAATTTATAAGCCGTAAAATACTTTAAACT-GAAAA
196 ACTATTATTCACGCATAGATTAAAATTTATAAGCCATAAAACACTTTAAACTCG-AGA
* * ** * * *
8110450 ATAACAATTTAAACGTTTAATTTTTAAAAAAAATTATGTTTATTTGACAGAATTAACTTGTTACG
1 ATAAAAATTTAAATGTTTAATTTTT-CCAAAAATTATATTTATTTGACATAATTGACTTGTTACG
* * * **
8110515 TTAAATCTCACACATTTACGTCAATATTTTAACAAAGTTTGTTCCACCTTTATAATGTTTTATAT
65 TTAAATCTCACACATTTACGTCAATATTTTGACAATGCTTGTTCCACCTTTATAATGTTTTACGT
* * * * * *
8110580 TAATTATTATC-ACTTTATGTCAAGGTTTTTCAACTACTAAATTTCAACATAATTCTTCTTATCT
130 TAATTCTTA-CGACTTTACGTCAAGATTTTTCAACTACTAATTTTCACCATAATTCTTTTTATCT
** * * * *
8110644 TTACTATTATTCATACATAGATTAAAGTTTATAAGCCATAAAATACTTTAAACCCAAGA
194 TTACTATTATTCACGCATAGATTAAAATTTATAAGCCATAAAACACTTTAAACTCGAGA
* *** * * *
8110703 ATAAAAAGTTAAATGTTTAATTTTTTTTGAAAATTATGTTTATTTTACATAATTGACTTATTACG
1 ATAAAAATTTAAATGTTTAA-TTTTTCCAAAAATTATATTTATTTGACATAATTGACTTGTTACG
* * * *
8110768 TTAAATCTCACACATTTA-TTACAATACTTAGACAAT-CTTTGTTCCACCTTTATAACGTTTTAC
65 TTAAATCTCACACATTTACGT-CAATATTTTGACAATGC-TTGTTCCACCTTTATAATGTTTTAC
* * * * * * * *
8110831 GTTAATTTTTTCGACTTTACATCATA-ACTTTTCAACTATTAATTTTTACCATAATTATTTATAT
128 GTTAATTCTTACGACTTTACGTCA-AGATTTTTCAACTACTAATTTTCACCATAATTCTTTTTAT
* *** * * * *
8110895 CCTTACTATTATTCTTACTTAGATTAAAATTTGTAAGCCGTAAAACAGTTTAAACTCGAGA
192 CTTTACTATTATTCACGCATAGATTAAAATTTATAAGCCATAAAACACTTTAAACTCGAGA
* * * * * * *
8110956 ATAAAAAGTTAAATGTATAA-TTTTCTCAAAAAATATATTTATTTGATATAATTGATTTGTTGCA
1 ATAAAAATTTAAATGTTTAATTTTTC-CAAAAATTATATTTATTTGACATAATTGACTTGTTACG
* ** * * *
8111020 TT-ATTCTCATGCATTTACGTTAATACTTTGACAATCCTTGTTCCACCTTTATAATGTTTTACGT
65 TTAAATCTCACACATTTACGTCAATATTTTGACAATGCTTGTTCCACCTTTATAATGTTTTACGT
* * * * * * * *
8111084 TAATTCTTAGGGCTTTACTTCAAGGTTTTTCAACTACTTATTTTCACAATAATTCTTTTTGTCCT
130 TAATTCTTACGACTTTACGTCAAGATTTTTCAACTACTAATTTTCACCATAATTCTTTTTATCTT
8111149 TACTATTATTC
195 TACTATTATTC
8111160 TTATGTTAAT
Statistics
Matches: 1432, Mismatches: 256, Indels: 60
0.82 0.15 0.03
Matches are distributed among these distances:
249 1 0.00
250 30 0.02
251 430 0.30
252 409 0.29
253 456 0.32
254 106 0.07
ACGTcount: A:0.34, C:0.14, G:0.08, T:0.44
Consensus pattern (252 bp):
ATAAAAATTTAAATGTTTAATTTTTCCAAAAATTATATTTATTTGACATAATTGACTTGTTACGT
TAAATCTCACACATTTACGTCAATATTTTGACAATGCTTGTTCCACCTTTATAATGTTTTACGTT
AATTCTTACGACTTTACGTCAAGATTTTTCAACTACTAATTTTCACCATAATTCTTTTTATCTTT
ACTATTATTCACGCATAGATTAAAATTTATAAGCCATAAAACACTTTAAACTCGAGA
Found at i:8110471 original size:504 final size:503
Alignment explanation
Indices: 8108068--8111159 Score: 2709
Period size: 504 Copynumber: 6.2 Consensus size: 503
8108058 CCTTAACTAC
* * * *
8108068 CTTTATAATGTTTTACGTTAATTCTTATCACTTTATGTCAA-AGTTTTTCAACAACTAAATTTT-
1 CTTTATAATGTTTTATGTTAATTCTTACCACTTTACGTCAAGA-TTTTTCAACTACT-AATTTTC
* * * * ** *
8108131 ACCATAATTCTATTTATCC-TTACTATTATTTACGCATA-AGTTAACA-TTTGTAAGCTGTAAAT
64 A-CATAATTCTTTTTATCCTTTACTATTATTCACACATAGA-TTAA-AGTTTGTAAACAATAAAA
* * * * *
8108193 CACTTTAAACTT-AAGAATAAAAATTTAACTGTTTAATTTCTCA-AAAATTATGTTTATTTGACA
126 CACTTTAAA-TTCGAGAAT-AAAATTTAAATGTTTAATTTTTTAGAAAATTATATTTATTTGACA
* * *
8108256 TAATTGACTTGTTACATTAAATCTCACATATTTACGTCAATATTTTGAAC-ATGCTTGTAT-CAC
189 TAATTGACTTATTACGTTAAATCTCACACATTTACGTCAATATTTT-AACAATGCTTGT-TCCAC
* * * * * * *
8108319 CTTTATAATATTTTACGTTAATTCTTATCG-TTTTATGA-CAA-AGCTTTTTAAATACTAATTTT
252 CTTTATAATGTTTTACATTAATTCTTA-CGACTTTA-CATCAAGA-CTTTTCAACTAATAATTTT
* * * * * * *
8108381 CATCATAATTTTTTTTATCTTTACTATTATTCACGTATAAATTAAAATTTGTAAGCCGTAAAACA
314 CACCATAATTCTTTATATCTTTACTATTATTCATGCATAGATTAAAATTTATAAGCCGTAAAACA
* * * *
8108446 CTTTAAACT--AAAGA-AAATAATTTTAATGTTTAATTTTTTCAAAAATTATGTTTATTTGATAT
379 CTTTAAACTCGAAA-ATAAA-AATTTAAATGTTTAATTTTCTCAAAAATTATATTTATTTGACAT
* * * * ** ** ** *
8108508 AATTGACTTATTATGTTATAA-CTCATACATTTATGTCAATATTTTGACAATTTTTAATCTAA
442 AATTAACTTGTTACGTTA-AATCTCACACATTTACATCAATATTTTGACAATGCTTGTTCCAA
* * * * * * **
8108570 CTTCATAATGTTTTACGTTAATTCTTACCACTTTATGTTAAGGTTTTTCAACTACTGATTTTTTC
1 CTTTATAATGTTTTATGTTAATTCTTACCACTTTACGTCAAGATTTTTCAACTACTAATTTTCAC
* * * * * * ** *
8108635 ATAATTCTTTTTATCC-TAACTATTATTCGCGCATAGATAAAAATTTGTAAGCCGTAAAACATTT
66 ATAATTCTTTTTATCCTTTACTATTATTCACACATAGATTAAAGTTTGTAAACAATAAAACACTT
* *** * ** *
8108699 TAAACTCGAGAATAACAATTTAAATGTTTAATTTCACCA-AAAATTATGTTTAACTAACATAATT
131 TAAATTCGAGAATAA-AATTTAAATGTTTAATTT-TTTAGAAAATTATATTTATTTGACATAATT
* ** ** * * * * * *
8108763 GACATGGTATATTAAATCTCATATATTTACGTCAATATTTTGACAATACTTATTCCACCATTATA
194 GACTTATTACGTTAAATCTCACACATTTACGTCAATATTTTAACAATGCTTGTTCCACCTTTATA
* * * * ** * ** * * *
8108828 ATATTTTACGTTAATTATTACCACTTTATGTTAAGGTTTTTCAACTACTAAATTTCAACATAATT
259 ATGTTTTACATTAATTCTTACGACTTTACATCAAGACTTTTCAACTAATAATTTTCACCATAATT
* * * * *
8108893 CTTT-TAATCTTTACTATTTTTCACGCATATATTAAAATTTATAAGCTGTAAAACACTTTAAAAT
324 CTTTAT-ATCTTTACTATTATTCATGCATAGATTAAAATTTATAAGCCGTAAAACACTTTAAACT
* *
8108957 TGAAAATAAAAA-TTAAATGTTTAATTCTTC-CAAAAAATT-T-TCTTATTTAACATAATTAACT
388 CGAAAATAAAAATTTAAATGTTTAATT-TTCTC-AAAAATTATAT-TTATTTGACATAATTAACT
* * * * * *
8109018 TATTACGTTAAATCTCACACATTTACGTCAATATTTTGACAATTCTTATTTCAC
450 TGTTACGTTAAATCTCACACATTTACATCAATATTTTGACAATGCTTGTTCCAA
* * * *** * * *
8109072 CTTTATAATATTTTACG-TAATTTTTATGGCTTTACGTCATGACTTTTCAACTA-TGAATTATCA
1 CTTTATAATGTTTTATGTTAATTCTTACCACTTTACGTCAAGATTTTTCAACTACT-AATTTTCA
* * * *
8109135 CCATAATTCTTTATATCC-TTACTATTATT----C------------TTGTATA-GATTAAA-AC
65 -CATAATTCTTTTTATCCTTTACTATTATTCACACATAGATTAAAGTTTGTAAACAATAAAACAC
* * * * * *
8109181 TTGAAAGTC-A-TA-AAAAGTTAAATGTTTAATTTTTCAAAAAATTATATTTATTTGACATAATT
129 TTTAAATTCGAGAATAAAATTTAAATGTTTAATTTTTTAGAAAATTATATTTATTTGACATAATT
* * * * *
8109243 GACTTGTTATGTTAAATCTCACACATTATACGTCAATATGTTCACAATGCTTGTTCCAGCTTTAT
194 GACTTATTACGTTAAATCTCACACATT-TACGTCAATATTTTAACAATGCTTGTTCCACCTTTAT
* * * * *
8109308 AATATTTTACATTAATTCTTACGGCTTTACGT-AATAACTTTTCAACTACA-AATTTTCGCCATA
258 AATGTTTTACATTAATTCTTACGACTTTACATCAA-GACTTTTCAACTA-ATAATTTTCACCATA
* * *
8109371 ATTCTTTATATCTTTACTATTATTCTTACATAGATTAAAATTTATAAGCCGTAAAACATTTTAAA
321 ATTCTTTATATCTTTACTATTATTCATGCATAGATTAAAATTTATAAGCCGTAAAACACTTTAAA
* *
8109436 CTCAAAAATAAAAATTTAAATGTTTAATTTTCTCAAAAATTATTTTTATTTGACATAATTAACTT
386 CTCGAAAATAAAAATTTAAATGTTTAATTTTCTCAAAAATTATATTTATTTGACATAATTAACTT
* * *
8109501 GTTACGTTAAATTTCACATATTTACATCAATATTTTGACAATGCTTGTTCTAA
451 GTTACGTTAAATCTCACACATTTACATCAATATTTTGACAATGCTTGTTCCAA
* * ** * *
8109554 CTTTATAATGTTTTACT-TTTATTTTTACGGCTTTACATCAAGATTTTTCAAATACTAATTTTCA
1 CTTTATAATGTTTTA-TGTTAATTCTTACCACTTTACGTCAAGATTTTTCAACTACTAATTTTCA
* * * * * *
8109618 CCATAACTCTTTTTATCC-TTACTATTATTTACACATGGAATAAAATTTGTCAACAATAAAACAC
65 -CATAATTCTTTTTATCCTTTACTATTATTCACACATAGATTAAAGTTTGTAAACAATAAAACAC
* *
8109682 TTTAAACTT-GAGAATAAAGATTTAAATGTTTAATTTTTTAGAAAATTATGTTTATTTGATATAA
129 TTTAAA-TTCGAGAATAAA-ATTTAAATGTTTAATTTTTTAGAAAATTATATTTATTTGACATAA
* * * ** * * * * *
8109746 TTGAATTATTATGTTAAATCTCATACATTTATATTAGTATTTTGACAATGCTTGTTCTATCTTTA
192 TTGACTTATTACGTTAAATCTCACACATTTACGTCAATATTTTAACAATGCTTGTTCCACCTTTA
* * * * ** * * *
8109811 TAATGTGTTACGTTAACTT-TTATC-ACTTAACGTCAAGGTTTTTCAACTACTAAATTTCATCAT
257 TAATGTTTTACATTAA-TTCTTA-CGACTTTACATCAAGACTTTTCAACTAATAATTTTCACCAT
* * * **
8109874 AATTCTTTTTATCTTTACT-GTACTCATGCATAGATTAAAATTTATAAGCTATAAAACACTTTAA
320 AATTCTTTATATCTTTACTATTATTCATGCATAGATTAAAATTTATAAGCCGTAAAACACTTTAA
* * *
8109938 ACTCGATAATAACAATTTAAATGTTTAA-TTTCTCCAAAAATTATATTTATTTGACATAATTGAC
385 ACTCGAAAATAAAAATTTAAATGTTTAATTTTCT-CAAAAATTATATTTATTTGACATAATTAAC
* * * * *
8110002 TTGTTACGTTAAATCTCACACATTTATATCAATATTTTGGCAATGTTTGCTCTAA
449 TTGTTACGTTAAATCTCACACATTTACATCAATATTTTGACAATGCTTGTTCCAA
*
8110057 CTTTATAATGTTTTATGTTAATTCTTACCACTTTACGTCAAGATTTTTCAACTATTAATTTTCAC
1 CTTTATAATGTTTTATGTTAATTCTTACCACTTTACGTCAAGATTTTTCAACTACTAATTTTCAC
** ** *
8110122 TATAATTCTTTTTATCCTTTTTTATTATTCACGTATAGATTAAAGTTTGTAAACTATAAAACACT
66 -ATAATTCTTTTTATCCTTTACTATTATTCACACATAGATTAAAGTTTGTAAACAATAAAACACT
* * * ** * * *
8110187 TTAAATTTCGAGAATAACAATTTCAATGTTTAATGTCTCCGAAAACTATATTTATTTAATATAAT
130 TTAAA-TTCGAGAATAA-AATTTAAATGTTTAATTTTTTAGAAAATTATATTTATTTGACATAAT
* * * * *
8110252 TGACTTGTTACGTTTAATCTCACACATTTACGTCGATATTTTAACAATGCTTGTTCCA-GTGTAT
193 TGACTTATTACGTTAAATCTCACACATTTACGTCAATATTTTAACAATGCTTGTTCCACCTTTAT
* ** *
8110316 AATGTTTTACATTAATTCTTACAACTTTACATCAAGGTTTTTCAACTAATAATTTTTACCATAAT
258 AATGTTTTACATTAATTCTTACGACTTTACATCAAGACTTTTCAACTAATAATTTTCACCATAAT
* * *
8110381 TCTTTTTATC-TTACTATTATTCATGTATAGATTAAAATTTATAAGCCGTAAAATACTTTAAACT
323 TCTTTATATCTTTACTATTATTCATGCATAGATTAAAATTTATAAGCCGTAAAACACTTTAAACT
* * * * *
8110445 -GAAAAATAACAATTTAAACGTTTAATTTT-TAAAAAAAATTATGTTTATTTGACAGAATTAACT
388 CG-AAAATAAAAATTTAAATGTTTAATTTTCT--CAAAAATTATATTTATTTGACATAATTAACT
* * * * *
8110508 TGTTACGTTAAATCTCACACATTTACGTCAATATTTTAACAAAGTTTGTTCCAC
450 TGTTACGTTAAATCTCACACATTTACATCAATATTTTGACAATGCTTGTTCCAA
* * * * * *
8110562 CTTTATAATGTTTTATATTAATTATTATCACTTTATGTCAAGGTTTTTCAACTACTAAATTTCAA
1 CTTTATAATGTTTTATGTTAATTCTTACCACTTTACGTCAAGATTTTTCAACTACTAATTTTC-A
* * * * * *
8110627 CATAATTCTTCTTAT-CTTTACTATTATTCATACATAGATTAAAGTTTATAAGCCATAAAATACT
65 CATAATTCTTTTTATCCTTTACTATTATTCACACATAGATTAAAGTTTGTAAACAATAAAACACT
** * * * * *
8110691 TTAAACCCAAGAATAAAAAGTTAAATGTTTAATTTTTTTTGAAAATTATGTTTATTTTACATAAT
130 TTAAATTCGAGAAT-AAAATTTAAATGTTTAA-TTTTTTAGAAAATTATATTTATTTGACATAAT
* *
8110756 TGACTTATTACGTTAAATCTCACACATTTA-TTACAATA-CTTAGACAAT-CTTTGTTCCACCTT
193 TGACTTATTACGTTAAATCTCACACATTTACGT-CAATATTTTA-ACAATGC-TTGTTCCACCTT
* * * * * *
8110818 TATAACGTTTTACGTTAATTTTTTCGACTTTACATCATA-ACTTTTCAACTATTAATTTTTACCA
255 TATAATGTTTTACATTAATTCTTACGACTTTACATCA-AGACTTTTCAACTAATAATTTTCACCA
* * * * * * *
8110882 TAATTATTTATATCCTTACTATTATTCTTACTTAGATTAAAATTTGTAAGCCGTAAAACAGTTTA
319 TAATTCTTTATATCTTTACTATTATTCATGCATAGATTAAAATTTATAAGCCGTAAAACACTTTA
* * * * * * *
8110947 AACTCGAGAATAAAAAGTTAAATGTATAATTTTCTCAAAAAATATATTTATTTGATATAATTGAT
384 AACTCGAAAATAAAAATTTAAATGTTTAATTTTCTCAAAAATTATATTTATTTGACATAATTAAC
* * * ** * * * * *
8111012 TTGTTGCATT-ATTCTCATGCATTTACGTTAATACTTTGACAATCCTTGTTCCAC
449 TTGTTACGTTAAATCTCACACATTTACATCAATATTTTGACAATGCTTGTTCCAA
* *** * * *
8111066 CTTTATAATGTTTTACGTTAATTCTTAGGGCTTTACTTCAAGGTTTTTCAACTACTTATTTTCAC
1 CTTTATAATGTTTTATGTTAATTCTTACCACTTTACGTCAAGATTTTTCAACTACTAATTTTCAC
*
8111131 AATAATTCTTTTTGTCC-TTACTATTATTC
66 -ATAATTCTTTTTATCCTTTACTATTATTC
8111160 TTATGTTAAT
Statistics
Matches: 2141, Mismatches: 363, Indels: 170
0.80 0.14 0.06
Matches are distributed among these distances:
479 2 0.00
480 62 0.03
481 157 0.07
482 95 0.04
483 66 0.03
484 9 0.00
485 4 0.00
486 5 0.00
487 1 0.00
498 1 0.00
499 5 0.00
500 10 0.00
501 130 0.06
502 355 0.17
503 258 0.12
504 499 0.23
505 407 0.19
506 73 0.03
507 2 0.00
ACGTcount: A:0.35, C:0.14, G:0.07, T:0.44
Consensus pattern (503 bp):
CTTTATAATGTTTTATGTTAATTCTTACCACTTTACGTCAAGATTTTTCAACTACTAATTTTCAC
ATAATTCTTTTTATCCTTTACTATTATTCACACATAGATTAAAGTTTGTAAACAATAAAACACTT
TAAATTCGAGAATAAAATTTAAATGTTTAATTTTTTAGAAAATTATATTTATTTGACATAATTGA
CTTATTACGTTAAATCTCACACATTTACGTCAATATTTTAACAATGCTTGTTCCACCTTTATAAT
GTTTTACATTAATTCTTACGACTTTACATCAAGACTTTTCAACTAATAATTTTCACCATAATTCT
TTATATCTTTACTATTATTCATGCATAGATTAAAATTTATAAGCCGTAAAACACTTTAAACTCGA
AAATAAAAATTTAAATGTTTAATTTTCTCAAAAATTATATTTATTTGACATAATTAACTTGTTAC
GTTAAATCTCACACATTTACATCAATATTTTGACAATGCTTGTTCCAA
Found at i:8111612 original size:252 final size:250
Alignment explanation
Indices: 8111167--8111896 Score: 742
Period size: 252 Copynumber: 2.9 Consensus size: 250
8111157 TTCTTATGTT
* * * *
8111167 AATTATGGTGAAAATTATTAGTTGAAAAGTCATGAAGTAAAGTCGTAAAAATTAACATAAAATAT
1 AATTATGGTG-AAATTAGTAGTTGAAAAGTCATGACGTAAAGTAGTAAGAATTAACATAAAATAT
* * * *
8111232 TATAAAAGTGGAACAAACATTGTCAAAATATT-AGCGTAAATGTATGAGATTTAACATAACACG-
65 TATAAAAGTGAAACAAATATTGTCAAAATATTGA-CGTAAATGTGTGAGATTT-ACGTAAC-CGA
* * * *
8111295 TCAATTATGTTAAATACACATAATTTTTGAGAAAATTAAACATTTAAATTTTTATTCTCGAGTTT
127 TCAATTATGTCAAATAAATATAATTTTTAAGAAAATTAAACATTTAAATTTTTATTCTCGAGTTT
* * * *
8111360 AAAGTGTTTTATAACTTATAAATTTTGATCTATA-AGTGAA-AAAAATTAAGGATAGAAAA-
192 AAAGTGTTCTATAACTTAGAAATTTTAATCTATACA-AGAATAAAAA-TAAGGATA-AAAAG
* * * * *
8111419 AATTATGGTGAAATTTAGTAGTTGAAAA-CCTTTGACTTAAAGTGGTAAGAATTAACATAAAACA
1 AATTATGGTGAAA-TTAGTAGTTGAAAAGTC-ATGACGTAAAGTAGTAAGAATTAACATAAAATA
* *** * *
8111483 TTTTAAAAGTGAAACTTGTATTGTCAAAATATTGACATAAATGTGTAAGATTTACTGTAACCGAT
64 TTATAAAAGTGAAACAAATATTGTCAAAATATTGACGTAAATGTGTGAGATTTAC-GTAACCGAT
*
8111548 CAATTATGTCAAATAAATATAATTTTTAAGAAAATTAAACATTTAAATTTTTATTCTTGAGTTTA
128 CAATTATGTCAAATAAATATAATTTTTAAGAAAATTAAACATTTAAATTTTTATTCTCGAGTTTA
* *
8111613 AAGTGTTCTATTACTTAGAAATTTTAATCTATACAAGAATAATAATAAGGATAAAAAG
193 AAGTGTTCTATAACTTAGAAATTTTAATCTATACAAGAATAAAAATAAGGATAAAAAG
** * * ** *
8111671 AATTATAATGAAAATACGTAGTTTAAAAGTCATGACGTAAAACAGTAAGAATTAACGTAAAATAT
1 AATTATGGTGAAATTA-GTAGTTGAAAAGTCATGACGTAAAGTAGTAAGAATTAACATAAAATAT
* * ***
8111736 TGT-AAAGAT-AGAACAAATATTGTCAAAATATTGACGTAAATGTGTGAGATTGAACGTAAAAAA
65 TATAAAAG-TGA-AACAAATATTGTCAAAATATTGACGTAAATGTGTGAGATT-TACGTAACCGA
* * * ** * * * *
8111799 TTAATTATGTGAAATAAATATAATTTTTTAA-AAACTTATGCATTCAAATTTCTATTCACAAGTT
127 TCAATTATGTCAAATAAATATAA-TTTTTAAGAAAATTAAACATTTAAATTTTTATTCTCGAGTT
* ** * *
8111863 TATAA-TGTTTTATGGCTTACAAAATTTAATCTAT
191 TA-AAGTGTTCTATAACTTAGAAATTTTAATCTAT
8111897 GTGTTAATAA
Statistics
Matches: 397, Mismatches: 66, Indels: 30
0.81 0.13 0.06
Matches are distributed among these distances:
251 19 0.05
252 360 0.91
253 18 0.05
ACGTcount: A:0.45, C:0.08, G:0.13, T:0.35
Consensus pattern (250 bp):
AATTATGGTGAAATTAGTAGTTGAAAAGTCATGACGTAAAGTAGTAAGAATTAACATAAAATATT
ATAAAAGTGAAACAAATATTGTCAAAATATTGACGTAAATGTGTGAGATTTACGTAACCGATCAA
TTATGTCAAATAAATATAATTTTTAAGAAAATTAAACATTTAAATTTTTATTCTCGAGTTTAAAG
TGTTCTATAACTTAGAAATTTTAATCTATACAAGAATAAAAATAAGGATAAAAAG
Found at i:8112670 original size:21 final size:22
Alignment explanation
Indices: 8112645--8112685 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
8112635 CCTAGGTGGA
8112645 AAAATTCAA-GAAAAAAGTGTG
1 AAAATTCAAGGAAAAAAGTGTG
*
8112666 AAAATTCAAGGAAACAAGTG
1 AAAATTCAAGGAAAAAAGTG
8112686 AAAAAAAGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.56, C:0.07, G:0.20, T:0.17
Consensus pattern (22 bp):
AAAATTCAAGGAAAAAAGTGTG
Found at i:8112690 original size:21 final size:20
Alignment explanation
Indices: 8112643--8112690 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 20
8112633 ACCCTAGGTG
8112643 GAAAAATTCAAGAAAAAAGT
1 GAAAAATTCAAGAAAAAAGT
* *
8112663 GTGAAAATTCAAGGAAACAAGT
1 G-AAAAATTCAA-GAAAAAAGT
8112685 GAAAAA
1 GAAAAA
8112691 AAGGTAAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 13 0.57
22 9 0.39
ACGTcount: A:0.60, C:0.06, G:0.19, T:0.15
Consensus pattern (20 bp):
GAAAAATTCAAGAAAAAAGT
Found at i:8112691 original size:22 final size:21
Alignment explanation
Indices: 8112644--8112691 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 21
8112634 CCCTAGGTGG
*
8112644 AAAAATTCAAGAAAAAAGTGT
1 AAAAATTCAAGAAAAAAGTGA
* *
8112665 GAAAATTCAAGGAAACAAGTGA
1 AAAAATTCAA-GAAAAAAGTGA
8112687 AAAAA
1 AAAAA
8112692 AGGTAAAATT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
21 9 0.41
22 13 0.59
ACGTcount: A:0.62, C:0.06, G:0.17, T:0.15
Consensus pattern (21 bp):
AAAAATTCAAGAAAAAAGTGA
Found at i:8116195 original size:22 final size:22
Alignment explanation
Indices: 8116140--8116195 Score: 94
Period size: 22 Copynumber: 2.5 Consensus size: 22
8116130 ATATTACGTG
*
8116140 ACTGATTTTTAAGCATTATGTA
1 ACTGATTTTTAGGCATTATGTA
*
8116162 ATTGATTTTTAGGCATTATGTA
1 ACTGATTTTTAGGCATTATGTA
8116184 ACTGATTTTTAG
1 ACTGATTTTTAG
8116196 ACAATGCCTA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.29, C:0.07, G:0.16, T:0.48
Consensus pattern (22 bp):
ACTGATTTTTAGGCATTATGTA
Found at i:8116291 original size:23 final size:23
Alignment explanation
Indices: 8116229--8116295 Score: 80
Period size: 24 Copynumber: 2.9 Consensus size: 23
8116219 TTAAAAATTT
* *
8116229 GTCACGCAATGCCTTACTAACTA
1 GTCACGCAATGACTTACTAACCA
* *
8116252 GTAATCGTAATGACTTACTAACCA
1 GTCA-CGCAATGACTTACTAACCA
*
8116276 GTCACGCAATGTCTTACTAA
1 GTCACGCAATGACTTACTAA
8116296 ATAGTCAAGT
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
23 17 0.47
24 19 0.53
ACGTcount: A:0.33, C:0.25, G:0.13, T:0.28
Consensus pattern (23 bp):
GTCACGCAATGACTTACTAACCA
Found at i:8116301 original size:23 final size:23
Alignment explanation
Indices: 8116229--8116302 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 23
8116219 TTAAAAATTT
*
8116229 GTCACGCAATGCCTTACTAACTA
1 GTCACGCAATGACTTACTAACTA
* * *
8116252 GTAATCGTAATGACTTACTAACCA
1 GTCA-CGCAATGACTTACTAACTA
* *
8116276 GTCACGCAATGTCTTACTAAATA
1 GTCACGCAATGACTTACTAACTA
8116299 GTCA
1 GTCA
8116303 AGTAATATCA
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
23 22 0.54
24 19 0.46
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.28
Consensus pattern (23 bp):
GTCACGCAATGACTTACTAACTA
Found at i:8116325 original size:46 final size:46
Alignment explanation
Indices: 8116229--8116331 Score: 113
Period size: 47 Copynumber: 2.2 Consensus size: 46
8116219 TTAAAAATTT
* *
8116229 GTCACGCAATGCCTTACTAACTAGTAATCGTAATGACTTACTAACCA
1 GTCACGCAATGCCTTACTAAATAGTAA-CGTAATGACATACTAACCA
*
8116276 GTCACGCAATGTCTTACTAAATAGTCAA-GTAAT-ATCATA-TCAACCA
1 GTCACGCAATGCCTTACTAAATAGT-AACGTAATGA-CATACT-AACCA
*
8116322 GTCACACAAT
1 GTCACGCAAT
8116332 ACACAAAAAT
Statistics
Matches: 49, Mismatches: 4, Indels: 7
0.82 0.07 0.12
Matches are distributed among these distances:
45 2 0.04
46 22 0.45
47 23 0.47
48 2 0.04
ACGTcount: A:0.37, C:0.24, G:0.12, T:0.27
Consensus pattern (46 bp):
GTCACGCAATGCCTTACTAAATAGTAACGTAATGACATACTAACCA
Found at i:8116405 original size:22 final size:22
Alignment explanation
Indices: 8116380--8116431 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
8116370 CGTAATACCT
*
8116380 AAAAACTAATCATGCAATGCCC
1 AAAAACTAATCACGCAATGCCC
* * * *
8116402 AAAAACTGATTACGCGATGCCT
1 AAAAACTAATCACGCAATGCCC
8116424 AAAAACTA
1 AAAAACTA
8116432 TAAAAACTAC
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.46, C:0.23, G:0.12, T:0.19
Consensus pattern (22 bp):
AAAAACTAATCACGCAATGCCC
Found at i:8117088 original size:15 final size:15
Alignment explanation
Indices: 8117048--8117089 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
8117038 ATAAAAAATT
*
8117048 AATAATTTAAACTTA
1 AATAATTTAAATTTA
8117063 AAGT-ATTTAAATTTA
1 AA-TAATTTAAATTTA
*
8117078 AATAATCTAAAT
1 AATAATTTAAAT
8117090 GTCAAATCTG
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
14 1 0.04
15 21 0.91
16 1 0.04
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.40
Consensus pattern (15 bp):
AATAATTTAAATTTA
Found at i:8121455 original size:2 final size:2
Alignment explanation
Indices: 8121442--8121471 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
8121432 GAATTAAGGG
*
8121442 AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8121472 CTATTAAGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:8126303 original size:45 final size:45
Alignment explanation
Indices: 8126242--8126335 Score: 125
Period size: 45 Copynumber: 2.1 Consensus size: 45
8126232 ATTAAATTTA
* * *
8126242 AATAATACTAAATAATATTCTTTATTACATTTATTATATTCAAAT
1 AATAATACTAAATAATATGCTTTATAACATTTATTATAGTCAAAT
* * * *
8126287 AATAATATTAAGTAATATGCTTTATAATATTTATTATAGTGAAAT
1 AATAATACTAAATAATATGCTTTATAACATTTATTATAGTCAAAT
8126332 AATA
1 AATA
8126336 TTAATATATT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.46, C:0.05, G:0.04, T:0.45
Consensus pattern (45 bp):
AATAATACTAAATAATATGCTTTATAACATTTATTATAGTCAAAT
Found at i:8142888 original size:3 final size:3
Alignment explanation
Indices: 8142880--8142923 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
8142870 TTTCATTCTC
8142880 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
8142924 CAACAACAAC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:8155852 original size:31 final size:31
Alignment explanation
Indices: 8155817--8155879 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
8155807 GAATATTGTA
8155817 GCACAAAATATTTAATGAGACATGTTAACAG
1 GCACAAAATATTTAATGAGACATGTTAACAG
8155848 GCACAAAATATTTAATGAGACATGTTAACAG
1 GCACAAAATATTTAATGAGACATGTTAACAG
8155879 G
1 G
8155880 AACCAATGTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.44, C:0.13, G:0.17, T:0.25
Consensus pattern (31 bp):
GCACAAAATATTTAATGAGACATGTTAACAG
Found at i:8159633 original size:33 final size:33
Alignment explanation
Indices: 8159560--8159640 Score: 108
Period size: 33 Copynumber: 2.5 Consensus size: 33
8159550 TAAAAAAATT
* * * *
8159560 AAATATAAAAAATTATATTAAGAAATAAAAATA
1 AAATATATAAAATTATAATAAAAAATAAAAACA
*
8159593 AAATATATAAAATTATAATAAAAAATAAGAACA
1 AAATATATAAAATTATAATAAAAAATAAAAACA
*
8159626 AAATATATAACATTA
1 AAATATATAAAATTA
8159641 AAAATATATT
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 42 1.00
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.27
Consensus pattern (33 bp):
AAATATATAAAATTATAATAAAAAATAAAAACA
Found at i:8171003 original size:20 final size:20
Alignment explanation
Indices: 8170978--8171019 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
8170968 GACACAGCAA
*
8170978 TGACCTTGTGTATAG-GTTAT
1 TGACCTTGTCTAT-GTGTTAT
8170998 TGACCTTGTCTATGTGTTAT
1 TGACCTTGTCTATGTGTTAT
8171018 TG
1 TG
8171020 CCACACTACA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 1 0.05
20 19 0.95
ACGTcount: A:0.17, C:0.12, G:0.24, T:0.48
Consensus pattern (20 bp):
TGACCTTGTCTATGTGTTAT
Found at i:8178050 original size:15 final size:15
Alignment explanation
Indices: 8178027--8178057 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
8178017 AGATCGGAGA
8178027 TTTTAGTTTTAAAGT
1 TTTTAGTTTTAAAGT
*
8178042 TTTTGGTTTTAAAGT
1 TTTTAGTTTTAAAGT
8178057 T
1 T
8178058 GTTTTAAGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.23, C:0.00, G:0.16, T:0.61
Consensus pattern (15 bp):
TTTTAGTTTTAAAGT
Found at i:8178897 original size:19 final size:19
Alignment explanation
Indices: 8178869--8178906 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
8178859 CCATTTGACT
*
8178869 TATTGGAGTATGATTTGAG
1 TATTGAAGTATGATTTGAG
8178888 TATTGAAGTATGATTTGAG
1 TATTGAAGTATGATTTGAG
8178907 ATTTAGAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.29, T:0.42
Consensus pattern (19 bp):
TATTGAAGTATGATTTGAG
Found at i:8186733 original size:19 final size:19
Alignment explanation
Indices: 8186709--8186746 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
8186699 ACTTTTAAAC
*
8186709 CTCAAATCATACTCTAATA
1 CTCAAATCATACTCCAATA
8186728 CTCAAATCATACTCCAATA
1 CTCAAATCATACTCCAATA
8186747 AGTCAAATGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.42, C:0.29, G:0.00, T:0.29
Consensus pattern (19 bp):
CTCAAATCATACTCCAATA
Found at i:8188900 original size:34 final size:34
Alignment explanation
Indices: 8188832--8188906 Score: 98
Period size: 34 Copynumber: 2.2 Consensus size: 34
8188822 AACATCTTCT
** *
8188832 GCTTTGGCTTTGACATGTAACATTTGGTGATGAA
1 GCTTTGGCTTTGACATGTAACACCTGCTGATGAA
8188866 GCTTTGGCTTTGACATGTAACACCTGCT-ACTGAA
1 GCTTTGGCTTTGACATGTAACACCTGCTGA-TGAA
*
8188900 GTTTTGG
1 GCTTTGG
8188907 TGTGTAACAT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
33 1 0.03
34 35 0.97
ACGTcount: A:0.21, C:0.16, G:0.25, T:0.37
Consensus pattern (34 bp):
GCTTTGGCTTTGACATGTAACACCTGCTGATGAA
Found at i:8193188 original size:251 final size:251
Alignment explanation
Indices: 8192616--8196365 Score: 2504
Period size: 251 Copynumber: 14.8 Consensus size: 251
8192606 TACATTCACA
* * * * * * * * * **
8192616 TCAATATTTTAACAATGCCTCTTCCACTTTTATAATTTATTATGTTAATTCTTA-CAGGTTTATG
1 TCAATATTTTGACAATACTTGTTCTACCTTTATAATTTTTTACGTTAATTCTTATTA-GTTTACA
* * * * * *
8192680 TCTAGATTTTTCAA-TAGCTAAATTTCATTATAATTATTTTTATCTTTACTATTATT-CATTATA
65 TCAAGGTTTTTCAATTA-CTAATTTTCACTATAATTATTTTTATCCTTACTATTATTCCTTTATA
* * * * * * * *
8192743 GATAAAAATTTATAAATCGTTAAATACTTTAAACTCAAGAATAAAAATATAAATGTCTAATTTTT
129 AATTAAAATTTGTAAACCGTTAAATACTTTAAACTCGAGAATATAAATTTAAATGTTTAATTTTT
* * * * * * * * *
8192808 CAAAAATTATATTTA-TTGAACTTAA-TAATTTCTTATGTTAAATCTCATACGTTTATG
194 AAAAAATTATGTTTATTTG-ACATAATTCACTTGTTACGTTAAATCTCACATGTTTATG
* * * * * * * * *
8192865 TCAATATTTTTACAATACTTGGTCCT-CATTTAAAAGTTTGTATGTTAATTCTTATAAGTTTACG
1 TCAATATTTTGACAATACTT-GTTCTACCTTTATAATTTTTTACGTTAATTCTTATTAGTTTACA
* * * * ** *
8192929 TCAAGGTTTTTCAATTGCTATTTTTCACTAAAATTATTTTTATCTTTACTATTATTAATTTTTAA
65 TCAAGGTTTTTCAATTACTAATTTTCACTATAATTATTTTTATCCTTACTATTATTCCTTTATAA
* * * * * *
8192994 ATTAAAATTTGTAAACTGTTCAATATTTTATATTCAAGAATATAAATTTAAATGTTTAATTTTTA
130 ATTAAAATTTGTAAACCGTTAAATACTTTAAACTCGAGAATATAAATTTAAATGTTTAATTTTTA
* * * *
8193059 AAAAATTATTTTTATTTGATATAATTGACTTAG-TACGTTAAATCTCACATGTTTACG
195 AAAAATTATGTTTATTTGACATAATTCACTT-GTTACGTTAAATCTCACATGTTTATG
* * * *
8193116 TTAATATTTTGACAATTCTTGTTCTACTTTTATAATTTTTTACGTTAATTCTTATTACTTTACAT
1 TCAATATTTTGACAATACTTGTTCTACCTTTATAATTTTTTACGTTAATTCTTATTAGTTTACAT
* **
8193181 CAAGGTTTTTCAATTAGTAATTTTCACTATAATTATTTTTATCCTTACTATTATTTATTTATAAA
66 CAAGGTTTTTCAATTACTAATTTTCACTATAATTATTTTTATCCTTACTATTATTCCTTTATAAA
* * * * * *
8193246 TTAAAATTTATAAACCG-TAATATACTTAAAACTTGATAATATAACTTTAAAAGTTT-ATGTTTT
131 TTAAAATTTGTAAACCGTTAA-ATACTTTAAACTCGAGAATATAAATTTAAATGTTTAAT-TTTT
* * * * ** * *
8193309 GAAAAAATTATGTTTGTATGACATAATTGATTTACTACGTTAAATCTCACACGTTTATA
194 -AAAAAATTATGTTTATTTGACATAATTCACTTGTTACGTTAAATCTCACATGTTTATG
* * * * ** * * *
8193368 TCAATATTTTAACAATAATCGTTCTGCCTTTATAATTTTTTATATTAATTCTTACTATTTTACTT
1 TCAATATTTTGACAATACTTGTTCTACCTTTATAATTTTTTACGTTAATTCTTATTAGTTTACAT
* * * * * * * * *
8193433 CAAAGTTTTTCAACTACCAATTTTTATTATAATTTTTTTTGTCCTTACTACTATTCATTTATAAA
66 CAAGGTTTTTCAATTACTAATTTTCACTATAATTATTTTTATCCTTACTATTATTCCTTTATAAA
* * * *
8193498 TTAAAATTTGTAAACCATTAAATATTTTAAACTTGAGAATATAAATTTAAATATTT-ATTATTTA
131 TTAAAATTTGTAAACCGTTAAATACTTTAAACTCGAGAATATAAATTTAAATGTTTAATT-TTTA
* ** ** * * ** ** ** * *
8193562 AAAAATTATATNACATGAGAATATAATTTAAATGTTTAATTTTAAAAAT--TATTTTTAT-
195 AAAAATTATGT-TTATTTG-ACATAATTCACTTG-TT-ACGTTAAATCTCACATGTTTATG
** * * ** * *
8193620 TTGATATAATTGACTTAGTACGTTAAATCTCACATGTTTACGTTAATATTTTGAC---AATTCTT
1 TCAATAT-TTTGAC--AATAC-TT-GTTCT-AC--CTTTA---TAAT-TTTTTACGTTAATTCTT
* * * * * * *
8193682 GTTCTACTTT-TAT-AA-TTTTTTACGTTAATT-CTTATTACTTTAC-ATCAAGGTTTTTCAACT
54 -AT-TAGTTTACATCAAGGTTTTT-C---AATTACTAATT--TTCACTAT-AA--TTATT----T
** ** ** * ** *
8193742 ATTAATTTTTACTGTAATTATT--TTTAT-CCTTACTA-TTGTTCCATTATAGATTAAA-ATTTA
104 -TT-ATCCTTAC--T-ATTATTCCTTTATAAATTAAAATTTG-T--A-AACCG-TTAAATACTT-
* * * * **
8193802 TAAAC-CG-TAATAT-ACTTAAAACTTGATAATATAA-CTTTAAAAGTTTATGTTTTGAAAAAAT
158 TAAACTCGAGAATATAAATTTAAA--TG-T--T-TAATTTTTAAAAAATTATG---T-------T
* * ** * *
8193863 TATGTTTGTATGACATAATTGATTTACTACGTTAAATCTCACACGTTTATA
207 TA----T-T-TGACATAATTCACTTGTTACGTTAAATCTCACATGTTTATG
* * * * * * * *
8193914 TCAATATTTTAACAATAATCGTTCTGCCTTTATAAGTTTTTACGTTAATTCTTATAATTTTACGT
1 TCAATATTTTGACAATACTTGTTCTACCTTTATAATTTTTTACGTTAATTCTTATTAGTTTACAT
* * * * * * * * *
8193979 CAAGGTTTTTTAACTATTAATTTTTATTATAATTTTTTTTGTCCTTACTACTATTCATTTATAAA
66 CAAGGTTTTTCAATTACTAATTTTCACTATAATTATTTTTATCCTTACTATTATTCCTTTATAAA
* * * *
8194044 TTAAAATTTGTAAACCATTAAATATTTTAAACTCGAGAATATAAATATAAATATTTAATTATTT-
131 TTAAAATTTGTAAACCGTTAAATACTTTAAACTCGAGAATATAAATTTAAATGTTTAATT-TTTA
* * * * *
8194108 AAAAATTATATTTATTTTACATAATTCACTTGCTACGTTAAATGTCACATGTTTACG
195 AAAAATTATGTTTATTTGACATAATTCACTTGTTACGTTAAATCTCACATGTTTATG
* * * * *
8194165 TCAATATTTTGACAATGCTTGTT-TCACTTTTATAATGTTTTATGTTAATTTTTATT-GCTTTAC
1 TCAATATTTTGACAATACTTGTTCT-ACCTTTATAATTTTTTACGTTAATTCTTATTAG-TTTAC
* * * * *
8194228 ATCAAAGTTTTTCAACTACTAATTTTCACCATAATTATTTTTATCTTTATTATTATTCCTTTATA
64 ATCAAGGTTTTTCAATTACTAATTTTCACTATAATTATTTTTATCCTTACTATTATTCCTTTATA
* ** * *
8194293 AATTAAAATTTGTAAACCATTAAATACTTTAAACTTTAGAATATAAATTTACATGTTTATTTTTT
129 AATTAAAATTTGTAAACCGTTAAATACTTTAAACTCGAGAATATAAATTTAAATGTTTAATTTTT
* * * * ** **
8194358 AAAAAAATTATTTTTATTTAATATAATTCATTTGTTACGTTAAATCTCACACATTTACA
194 -AAAAAATTATGTTTATTTGACATAATTCACTTGTTACGTTAAATCTCACATGTTTATG
* * * * * *
8194417 TCAATATTTTAACAATACTTGTTTTGCACATTTATAAGTTTTTACGTTAATTCTTATAATTTTAC
1 TCAATATTTTGACAATACTTGTTCT--ACCTTTATAATTTTTTACGTTAATTCTTATTAGTTTAC
* * * * * *
8194482 GTCAAGGTTTTTTAACTACTAATTTTCATTATAATTATTTTTATCCTTACTAATATTCCTTCATA
64 ATCAAGGTTTTTCAATTACTAATTTTCACTATAATTATTTTTATCCTTACTATTATTCCTTTATA
* * * * *
8194547 AATTAAAATTTATAAATCGTTAAATACTTTAAACTCGAGAATATTAATTTAAATATTTATTTTTT
129 AATTAAAATTTGTAAACCGTTAAATACTTTAAACTCGAGAATATAAATTTAAATGTTTAATTTTT
* * * * * ***
8194612 CAAAAAATGATGTTTATCTAACATAATTAACTCGTTATAATAAATCTCACATGTTTATG
194 -AAAAAATTATGTTTATTTGACATAATTCACTTGTTACGTTAAATCTCACATGTTTATG
* * * * * *
8194671 TCTATATTTTGACAATAGTTGTTCTACCTTTGTAATGTTTTACGTTAATTCTTACTACTTTACAT
1 TCAATATTTTGACAATACTTGTTCTACCTTTATAATTTTTTACGTTAATTCTTATTAGTTTACAT
* * * * * **
8194736 CAAGGTTTTTCAACTACTAA-TTTCATTATAATTATTTTTATCTTTCCTATCATTCCTCCATAAA
66 CAAGGTTTTTCAATTACTAATTTTCACTATAATTATTTTTATCCTTACTATTATTCCTTTATAAA
* * *
8194800 TTAAAATTTGTAAACCGTTAAATACATTAAACTCGAGAATATAAATTTAAATATTT-ATTTTAAA
131 TTAAAATTTGTAAACCGTTAAATACTTTAAACTCGAGAATATAAATTTAAATGTTTAATTTT--T
* * * * ** *
8194864 AAAAAACTATATTTATTTGACATAATTTACTTATTACGTTAAATCTCACACATTTGTG
194 AAAAAATTATGTTTATTTGACATAATTCACTTGTTACGTTAAATCTCACATGTTTATG
* * * * * * *
8194922 TCAATATTTTGACAATTCTTGTT-TCACATTTATCATATTTTATGTTAATT-TTA-CAGGTTTAT
1 TCAATATTTTGACAATACTTGTTCT-ACCTTTATAATTTTTTACGTTAATTCTTATTA-GTTTAC
* * * * * *
8194984 GTCAAGGTTTTTCAACTACTAATTTCCATTATAATTATTTTTATCCAT-CGTATTATTCTTTTAT
64 ATCAAGGTTTTTCAATTACTAATTTTCACTATAATTATTTTTATCCTTAC-TATTATTCCTTTAT
*** * * * * *
8195048 AAATTTTTATTTATAAATCATTAAATACTTTAAACTCAAGAATATAAATTTAAATATTT-ATTTT
128 AAATTAAAATTTGTAAACCGTTAAATACTTTAAACTCGAGAATATAAATTTAAATGTTTAATTTT
* * * *
8195112 TCCAAAACATTAAT-TTT-TTTGACATAATTCACTTGTTACGTTAAATCTCGCATATTTATA
193 T--AAAAAATT-ATGTTTATTTGACATAATTCACTTGTTACGTTAAATCTCACATGTTTATG
* ** * * ** **
8195172 TCAATATTTTGATAATGTTTGTTCAACCTTTATAAATTTTTATATTAATTCTT-GCAGGTTTA-A
1 TCAATATTTTGACAATACTTGTTCTACCTTTATAATTTTTTACGTTAATTCTTATTA-GTTTACA
** * * * *
8195235 GTCAAAATTTTTCAACTATTAATTTTTACTATAATTATTTTTATCCTTATTATTATTCCTTTATA
65 -TCAAGGTTTTTCAATTACTAATTTTCACTATAATTATTTTTATCCTTACTATTATTCCTTTATA
* * * * *
8195300 AATTGAAATTTGTAAACCGTTAGATACTTTACACTTGAG-A-AT--A--TAAATGTTTATTTTTT
129 AATTAAAATTTGTAAACCGTTAAATACTTTAAACTCGAGAATATAAATTTAAATGTTTAATTTTT
* * * *
8195359 CAAAAACATTATGTTAATTTTGACATAATTTACTTGTTACGTTAAATCTCAAATATTTATG
194 -AAAAA-ATTATGTTTA-TTTGACATAATTCACTTGTTACGTTAAATCTCACATGTTTATG
** * * * * **
8195420 TCAATATTTTGACAATGTTTGTCCCACCTTTATAATTTTTCACATTAATTCTTA-TAGGTTTAGG
1 TCAATATTTTGACAATACTTGTTCTACCTTTATAATTTTTTACGTTAATTCTTATTA-GTTTACA
* * * * *
8195484 TCAAGGTTTTTCAACTATTAATTTTCACTATAATTA-TTTTAT-CTTACCATTATTCATTTATTA
65 TCAAGGTTTTTCAATTACTAATTTTCACTATAATTATTTTTATCCTTACTATTATTCCTTTATAA
* * * * * * *
8195547 ATTAAAATTTCTGAAA-CATTAAAAACTTTAAACTCGATAATAAAAATTTAAATATTTACTTTTC
130 ATTAAAATTTGT-AAACCGTTAAATACTTTAAACTCGAGAATATAAATTTAAATGTTTAATTTT-
* * *
8195611 AAAAAAATTATGTTTATTTAACATAATTCACTTGTTATGTTAAATCTCATGCAT-TTATAT-
193 TAAAAAATTATGTTTATTTGACATAATTCACTTGTTACGTTAAATCTCA--CATGTT-TATG
* * ** *
8195671 T-AATATTTTAATAATACTTGTT-TCATGTTTATAATTTTTTACGTTAA-TCTT-TACAGGTTTA
1 TCAATATTTTGACAATACTTGTTCT-ACCTTTATAATTTTTTACGTTAATTCTTAT-TA-GTTTA
** * * * *
8195732 TGTCAAGGTTTTTCAATTACTAATTTTCACTATTATTGTTTTTATCCTTGCTATTATTCCTTTGT
63 CATCAAGGTTTTTCAATTACTAATTTTCACTATAATTATTTTTATCCTTACTATTATTCCTTTAT
* * * * * * * * *
8195797 AAAATAAAATTTGTAAACCATTATATACTTTAAATTCGAAAATATAAATCTAAGTTTTTAGTTTT
128 AAATTAAAATTTGTAAACCGTTAAATACTTTAAACTCGAGAATATAAATTTAAATGTTTA--ATT
* * * * * * *
8195862 TTTAAAAAATTATATTTATTTAATATAATTGACTTGTTAAGTTAAATCTCACATATTTACAG
191 TTTAAAAAATTATGTTTATTTGACATAATTCACTTGTTACGTTAAATCTCACATGTTTA-TG
* ** *
8195924 T-AATATTTTAACAATGTTTGTTCTACCTTTATAATTTTTTACGTTAATTCTTA-TAGTTTTATA
1 TCAATATTTTGACAATACTTGTTCTACCTTTATAATTTTTTACGTTAATTCTTATTAG-TTTACA
* * * * *
8195987 TCAAGGTTTTTAAATTACCAATTTTCACTAT-ATTATTTTTATCCTCACTATTGTTCCTTTAAAA
65 TCAAGGTTTTTCAATTACTAATTTTCACTATAATTATTTTTATCCTTACTATTATTCCTTTATAA
* ** * * *
8196051 AATAAAATTTGTAAACTATTAAATACTTTAAACTCAAAAATATGAATTTAAATGTTT-ATTTTTA
130 ATTAAAATTTGTAAACCGTTAAATACTTTAAACTCGAGAATATAAATTTAAATGTTTAATTTTT-
* ** * * * * * *
8196115 AAAAAATTTATGTTTATTTGGCACGATTAACTTTTTACGTTAAAAT-TTATACGTTTACG
194 AAAAAA-TTATGTTTATTTGACATAATTCACTTGTTACGTT-AAATCTCACATGTTTATG
* * * * * ** *
8196174 TCAATATTTTGACTATGCTTGCTCCACCTTTATAATTTTTAATATTAATACTTA-TAGGTTTACA
1 TCAATATTTTGACAATACTTGTTCTACCTTTATAATTTTTTACGTTAATTCTTATTA-GTTTACA
* * * * *
8196238 TCAAGGTTTTTTAATTACTAATTTTTACTATAATTATTTTTATCCTTATTATTGTT-CTTTCAGA
65 TCAAGGTTTTTCAATTACTAATTTTCACTATAATTATTTTTATCCTTACTATTATTCCTTT-ATA
* * * *
8196302 AATTAAAATTTGTACATCGTTAAATACTTTAAACCCGAGAATATAAATTTAAATGTCTAATTTT
129 AATTAAAATTTGTAAACCGTTAAATACTTTAAACTCGAGAATATAAATTTAAATGTTTAATTTT
8196366 CCAAGAAATT
Statistics
Matches: 2763, Mismatches: 577, Indels: 318
0.76 0.16 0.09
Matches are distributed among these distances:
245 15 0.01
246 53 0.02
247 11 0.00
248 127 0.05
249 105 0.04
250 316 0.11
251 883 0.32
252 574 0.21
253 148 0.05
254 219 0.08
255 10 0.00
256 1 0.00
257 6 0.00
258 1 0.00
260 9 0.00
261 10 0.00
262 1 0.00
263 13 0.00
264 11 0.00
265 6 0.00
266 3 0.00
267 13 0.00
268 3 0.00
269 11 0.00
270 13 0.00
271 8 0.00
272 15 0.01
273 20 0.01
274 16 0.01
275 8 0.00
276 12 0.00
277 11 0.00
279 17 0.01
280 1 0.00
281 7 0.00
282 12 0.00
283 11 0.00
284 2 0.00
285 9 0.00
286 9 0.00
288 2 0.00
289 3 0.00
290 1 0.00
291 10 0.00
292 2 0.00
293 19 0.01
294 6 0.00
ACGTcount: A:0.35, C:0.11, G:0.07, T:0.48
Consensus pattern (251 bp):
TCAATATTTTGACAATACTTGTTCTACCTTTATAATTTTTTACGTTAATTCTTATTAGTTTACAT
CAAGGTTTTTCAATTACTAATTTTCACTATAATTATTTTTATCCTTACTATTATTCCTTTATAAA
TTAAAATTTGTAAACCGTTAAATACTTTAAACTCGAGAATATAAATTTAAATGTTTAATTTTTAA
AAAATTATGTTTATTTGACATAATTCACTTGTTACGTTAAATCTCACATGTTTATG
Found at i:8193519 original size:17 final size:17
Alignment explanation
Indices: 8193497--8193529 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
8193487 TCATTTATAA
8193497 ATTAAA-ATTTGTAAACC
1 ATTAAATATTT-TAAACC
8193514 ATTAAATATTTTAAAC
1 ATTAAATATTTTAAAC
8193530 TTGAGAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.48, C:0.09, G:0.03, T:0.39
Consensus pattern (17 bp):
ATTAAATATTTTAAACC
Found at i:8193539 original size:503 final size:501
Alignment explanation
Indices: 8192590--8196357 Score: 3127
Period size: 503 Copynumber: 7.4 Consensus size: 501
8192580 ATTATAAGTA
* ** * * * * * * * *
8192590 GTTACGTTAAATCTCATACATTCACATCAATATTTTAACAATGCCTCTTCCACTTTTATAATTTA
1 GTTACGTTAAATCTCACATGTTTACGTTAATATTTTGACAATGCTTGTTCTACTTTTATAATTTT
* * * ** * * * *
8192655 TTATGTTAATTCTTA-CAGGTTTATGTCTAGATTTTTCAA-TAGCTAAATTTCATTATAATTATT
66 TTACGTTAATTCTTATTA-CTTTACATCAAGGTTTTTCAACTA-CTAATTTTCACTATAATTATT
* * * * * * **
8192718 TTTATCTTTACTATTATT-CATTATAGATAAAAATTTATAAATCGTTAAATACTTTAAACTCAAG
129 TTTATCCTTACTATTATTCCTTTATAAATTAAAATTTGTAAACCG-TAAATACTTTAAACTTGAG
* * * * * * * * *
8192782 AATAAAAATATAAATGTCTAATTTTT-CAAAAATTATATTTA-TTGAACTTAA-TAATTTCTTAT
193 AATATAAATTTAAATGTTTATTTTTTAAAAAAATTATATTTATTTG-ACATAATTGATTTATTAC
* * * * * * * * * * *
8192844 GTTAAATCTCATACGTTTATGTCAATATTTTTACAATACTTGGTCCT-CATTTAAAAGTTTGTAT
257 GTTAAATCTCACACATTTATATCAATATTTTAACAATA-TTTGTTCTGCCTTTATAATTTTTTAC
* * * * * *
8192908 GTTAATTCTTATAAGTTTACGTCAAGGTTTTTCAATTGCTATTTTTCACTAAAATTATTTTTATC
321 GTTAATTCTTAT-ATTTTACGTCAAGGTTTTTCAACTACTAATTTTCATTATAATTATTTTTATC
* * * ** * * * * *
8192973 TTTACTATTATTAATTTTTAAATTAAAATTTGTAAACTGTTCAATATTTTATATTCAAGAATATA
385 CTTACTATTATTCATTTATAAATTAAAATTTGTAAACCATTAAATACTTTAAACTCGAGAATATA
* * * *
8193038 AATTTAAATGTTTAATTTTTAAAAAATTATTTTTATTTGATATAATTGACTT
450 AATTTAAATATTTAATTTTTAAAAAATTATGTTTATTTGACATAATTAACTT
*
8193090 AG-TACGTTAAATCTCACATGTTTACGTTAATATTTTGACAATTCTTGTTCTACTTTTATAATTT
1 -GTTACGTTAAATCTCACATGTTTACGTTAATATTTTGACAATGCTTGTTCTACTTTTATAATTT
* *
8193154 TTTACGTTAATTCTTATTACTTTACATCAAGGTTTTTCAATTAGTAATTTTCACTATAATTATTT
65 TTTACGTTAATTCTTATTACTTTACATCAAGGTTTTTCAACTACTAATTTTCACTATAATTATTT
** * * *
8193219 TTATCCTTACTATTATTTATTTATAAATTAAAATTTATAAACCGTAATATACTTAAAACTTGATA
130 TTATCCTTACTATTATTCCTTTATAAATTAAAATTTGTAAACCGTAA-ATACTTTAAACTTGAGA
* * * * * * * *
8193284 ATATAACTTTAAAAGTTTATGTTTTGAAAAAATTATGTTTGTATGACATAATTGATTTACTACGT
194 ATATAAATTTAAATGTTTATTTTTTAAAAAAATTATATTTATTTGACATAATTGATTTATTACGT
* * * **
8193349 TAAATCTCACACGTTTATATCAATATTTTAACAATAATCGTTCTGCCTTTATAATTTTTTATATT
259 TAAATCTCACACATTTATATCAATATTTTAACAATATTTGTTCTGCCTTTATAATTTTTTACGTT
* * * * * *
8193414 AATTCTTACTATTTTACTTCAAAGTTTTTCAACTACCAATTTTTATTATAATTTTTTTTGTCCTT
324 AATTCTTA-TATTTTACGTCAAGGTTTTTCAACTACTAATTTTCATTATAATTATTTTTATCCTT
* * *
8193479 ACTACTATTCATTTATAAATTAAAATTTGTAAACCATTAAATATTTTAAACTTGAGAATATAAAT
388 ACTATTATTCATTTATAAATTAAAATTTGTAAACCATTAAATACTTTAAACTCGAGAATATAAAT
* ** ** * *
8193544 TTAAATATTT-ATTATTTAAAAAATTATATNACATGAGAATATAATTTAA-AT
453 TTAAATATTTAATT-TTTAAAAAATTATGT-TTATTTG-ACATAA-TTAACTT
** * * *
8193595 GTTTAATTTTAAAAATTATTTTTATTTGATATAATTGACTTAGTACGTTAAATCTCACATGTTT-
1 G-TT-ACGTT----A--A-----ATCT--CA-CA-TG--TT--TACGTT-AA--T---AT-TTTG
* * * * *
8193659 ACGTTAATATTTTGACAATTCTTGTTCTACTTTTATAATTTTTTACGTTAATTCTTATTACTTTA
38 AC----A-A---TG-C--TTGTTCTACT-TTTA--TAATTTTTTACGTTAATTCTTATTACTTTA
* * * * *
8193724 CATCAAGGTTTTTCAACTATTAATTTTTACTGTAATTATTTTTATCCTTACTATTGTTCCATTAT
89 CATCAAGGTTTTTCAACTACTAATTTTCACTATAATTATTTTTATCCTTACTATTATTCCTTTAT
* * * * * * *
8193789 AGATTAAAATTTATAAACCGTAATATACTTAAAACTTGATAATATAACTTTAAAAGTTTATGTTT
154 AAATTAAAATTTGTAAACCGTAA-ATACTTTAAACTTGAGAATATAAATTTAAATGTTTATTTTT
* * * * * *
8193854 TGAAAAAATTATGTTTGTATGACATAATTGATTTACTACGTTAAATCTCACACGTTTATATCAAT
218 TAAAAAAATTATATTTATTTGACATAATTGATTTATTACGTTAAATCTCACACATTTATATCAAT
* * *
8193919 ATTTTAACAATAATCGTTCTGCCTTTATAAGTTTTTACGTTAATTCTTATAATTTTACGTCAAGG
283 ATTTTAACAATATTTGTTCTGCCTTTATAATTTTTTACGTTAATTCTTAT-ATTTTACGTCAAGG
* * * * * *
8193984 TTTTTTAACTATTAATTTTTATTATAATTTTTTTTGTCCTTACTACTATTCATTTATAAATTAAA
347 TTTTTCAACTACTAATTTTCATTATAATTATTTTTATCCTTACTATTATTCATTTATAAATTAAA
* *
8194049 ATTTGTAAACCATTAAATATTTTAAACTCGAGAATATAAATATAAATATTTAATTATTT-AAAAA
412 ATTTGTAAACCATTAAATACTTTAAACTCGAGAATATAAATTTAAATATTTAATT-TTTAAAAAA
* * *
8194113 TTATATTTATTTTACATAATTCACTT
476 TTATGTTTATTTGACATAATTAACTT
* * * *
8194139 GCTACGTTAAATGTCACATGTTTACGTCAATATTTTGACAATGCTTGTT-TCACTTTTATAATGT
1 GTTACGTTAAATCTCACATGTTTACGTTAATATTTTGACAATGCTTGTTCT-ACTTTTATAATTT
* * * * *
8194203 TTTATGTTAATTTTTATTGCTTTACATCAAAGTTTTTCAACTACTAATTTTCACCATAATTATTT
65 TTTACGTTAATTCTTATTACTTTACATCAAGGTTTTTCAACTACTAATTTTCACTATAATTATTT
* * * *
8194268 TTATCTTTATTATTATTCCTTTATAAATTAAAATTTGTAAACCATTAAATACTTTAAACTTTAGA
130 TTATCCTTACTATTATTCCTTTATAAATTAAAATTTGTAAACC-GTAAATACTTTAAACTTGAGA
* * * * * *
8194333 ATATAAATTTACATGTTTATTTTTTAAAAAAATTATTTTTATTTAATATAATTCATTTGTTACGT
194 ATATAAATTTAAATGTTTATTTTTTAAAAAAATTATATTTATTTGACATAATTGATTTATTACGT
* * * *
8194398 TAAATCTCACACATTTACATCAATATTTTAACAATACTTGTTTTGCACATTTATAAGTTTTTACG
259 TAAATCTCACACATTTATATCAATATTTTAACAATATTTGTTCTGC-C-TTTATAATTTTTTACG
*
8194463 TTAATTCTTATAATTTTACGTCAAGGTTTTTTAACTACTAATTTTCATTATAATTATTTTTATCC
322 TTAATTCTTAT-ATTTTACGTCAAGGTTTTTCAACTACTAATTTTCATTATAATTATTTTTATCC
* * * * * * *
8194528 TTACTAATATTCCTTCATAAATTAAAATTTATAAATCGTTAAATACTTTAAACTCGAGAATATTA
386 TTACTATTATTCATTTATAAATTAAAATTTGTAAACCATTAAATACTTTAAACTCGAGAATATAA
* * * * *
8194593 ATTTAAATATTTATTTTTTCAAAAAATGATGTTTATCTAACATAATTAACTC
451 ATTTAAATATTTAATTTTT-AAAAAATTATGTTTATTTGACATAATTAACTT
*** * * * *
8194645 GTTATAATAAATCTCACATGTTTATGTCT-ATATTTTGACAATAG-TTGTTCTACCTTTGTAATG
1 GTTACGTTAAATCTCACATGTTTACGT-TAATATTTTGACAAT-GCTTGTTCTACTTTTATAATT
* *
8194708 TTTTACGTTAATTCTTACTACTTTACATCAAGGTTTTTCAACTACTAA-TTTCATTATAATTATT
64 TTTTACGTTAATTCTTATTACTTTACATCAAGGTTTTTCAACTACTAATTTTCACTATAATTATT
* * * ** * *
8194772 TTTATCTTTCCTATCATTCCTCCATAAATTAAAATTTGTAAACCGTTAAATACATTAAACTCGAG
129 TTTATCCTTACTATTATTCCTTTATAAATTAAAATTTGTAAACCG-TAAATACTTTAAACTTGAG
* ** * * *
8194837 AATATAAATTTAAATATTTATTTTAAAAAAAAACTATATTTATTTGACATAATTTACTTATTACG
193 AATATAAATTTAAATGTTTATTTTTTAAAAAAATTATATTTATTTGACATAATTGATTTATTACG
* * * * *
8194902 TTAAATCTCACACATTTGTGTCAATATTTTGACAAT-TCTTGTT-T-CACATTTATCATATTTTA
258 TTAAATCTCACACATTTATATCAATATTTTAACAATAT-TTGTTCTGC-C-TTTATAATTTTTTA
* * * * *
8194964 TGTTAATT-TTACAGGTTTATGTCAAGGTTTTTCAACTACTAATTTCCATTATAATTATTTTTAT
320 CGTTAATTCTTATA-TTTTACGTCAAGGTTTTTCAACTACTAATTTTCATTATAATTATTTTTAT
* * *** * * *
8195028 CCAT-CGTATTATTCTTTTATAAATTTTTATTTATAAATCATTAAATACTTTAAACTCAAGAATA
384 CCTTAC-TATTATTCATTTATAAATTAAAATTTGTAAACCATTAAATACTTTAAACTCGAGAATA
* *
8195092 TAAATTTAAATATTT-ATTTTTCCAAAACATTAAT-TTT-TTTGACATAATTCACTT
448 TAAATTTAAATATTTAATTTTT--AAAAAATT-ATGTTTATTTGACATAATTAACTT
* * ** * * * * * *
8195146 GTTACGTTAAATCTCGCATATTTATATCAATATTTTGATAATGTTTGTTCAACCTTTATAAATTT
1 GTTACGTTAAATCTCACATGTTTACGTTAATATTTTGACAATGCTTGTTCTACTTTTATAATTTT
** ** * ** * *
8195211 TTATATTAATTCTT-GCAGGTTTA-AGTCAAAATTTTTCAACTATTAATTTTTACTATAATTATT
66 TTACGTTAATTCTTATTA-CTTTACA-TCAAGGTTTTTCAACTACTAATTTTCACTATAATTATT
* * * *
8195274 TTTATCCTTATTATTATTCCTTTATAAATTGAAATTTGTAAACCGTTAGATACTTTACACTTGAG
129 TTTATCCTTACTATTATTCCTTTATAAATTAAAATTTGTAAACCG-TAAATACTTTAAACTTGAG
* * * * * *
8195339 -A-AT--A--TAAATGTTTATTTTTTCAAAAACATTATGTTAATTTTGACATAATTTACTTGTTA
193 AATATAAATTTAAATGTTTATTTTTT-AAAAAAATTATATTTA-TTTGACATAATTGATTTATTA
* * * * * * ** *
8195398 CGTTAAATCTCAAATATTTATGTCAATATTTTGACAATGTTTGTCCCACCTTTATAATTTTTCAC
256 CGTTAAATCTCACACATTTATATCAATATTTTAACAATATTTGTTCTGCCTTTATAATTTTTTAC
* * * * *
8195463 ATTAATTCTTATAGGTTTAGGTCAAGGTTTTTCAACTATTAATTTTCACTATAATTA-TTTTAT-
321 GTTAATTCTTATA-TTTTACGTCAAGGTTTTTCAACTACTAATTTTCATTATAATTATTTTTATC
* * * * * *
8195526 CTTACCATTATTCATTTATTAATTAAAATTTCTGAAA-CATTAAAAACTTTAAACTCGATAATAA
385 CTTACTATTATTCATTTATAAATTAAAATTTGT-AAACCATTAAATACTTTAAACTCGAGAATAT
* * * *
8195590 AAATTTAAATATTTACTTTTCAAAAAAATTATGTTTATTTAACATAATTCACTT
449 AAATTTAAATATTTAATTTT-TAAAAAATTATGTTTATTTGACATAATTAACTT
* * * *
8195644 GTTATGTTAAATCTCATGCAT-TTATA--TTAATATTTTAATAATACTTGTT-T-CATGTTTATA
1 GTTACGTTAAATCTCA--CATGTT-TACGTTAATATTTTGACAATGCTTGTTCTAC-T-TTTATA
** * *
8195704 ATTTTTTACGTTAA-TC-T-TTACAGGTTTATGTCAAGGTTTTTCAATTACTAATTTTCACTATT
61 ATTTTTTACGTTAATTCTTATTAC---TTTACATCAAGGTTTTTCAACTACTAATTTTCACTATA
* * * * * *
8195766 ATTGTTTTTATCCTTGCTATTATTCCTTTGTAAAATAAAATTTGTAAACCATTATATACTTTAAA
123 ATTATTTTTATCCTTACTATTATTCCTTTATAAATTAAAATTTGTAAACC-GTAAATACTTTAAA
* * * * * * * *
8195831 -TTCGAAAATATAAATCTAAGTTTTTAGTTTTTTTAAAAAATTATATTTATTTAATATAATTGAC
187 CTT-GAGAATATAAATTTAAATGTTTA-TTTTTTAAAAAAATTATATTTATTTGACATAATTGAT
* * * * * *
8195895 TTGTTAAGTTAAATCTCACATATTTACAGT-AATATTTTAACAATGTTTGTTCTACCTTTATAAT
250 TTATTACGTTAAATCTCACACATTTATA-TCAATATTTTAACAATATTTGTTCTGCCTTTATAAT
** * * * *
8195959 TTTTTACGTTAATTCTTATAGTTTTATATCAAGGTTTTTAAATTACCAATTTTCACTAT-ATTAT
314 TTTTTACGTTAATTCTTATA-TTTTACGTCAAGGTTTTTCAACTACTAATTTTCATTATAATTAT
* * * * * * *
8196023 TTTTATCCTCACTATTGTTCCTTTAAAAAATAAAATTTGTAAACTATTAAATACTTTAAACTCAA
378 TTTTATCCTTACTATTATTCATTTATAAATTAAAATTTGTAAACCATTAAATACTTTAAACTCGA
* * * * **
8196088 AAATATGAATTTAAATGTTT-ATTTTTAAAAAAATTTATGTTTATTTGGCACGATTAACTT
443 GAATATAAATTTAAATATTTAATTTTT-AAAAAA-TTATGTTTATTTGACATAATTAACTT
* * * * * * * * *
8196148 TTTACGTTAAAAT-TTATACGTTTACGTCAATATTTTGACTATGCTTGCTCCACCTTTATAATTT
1 GTTACGTT-AAATCTCACATGTTTACGTTAATATTTTGACAATGCTTGTTCTACTTTTATAATTT
* ** * * * * *
8196212 TTAATATTAATACTTA-TAGGTTTACATCAAGGTTTTTTAATTACTAATTTTTACTATAATTATT
65 TTTACGTTAATTCTTATTA-CTTTACATCAAGGTTTTTCAACTACTAATTTTCACTATAATTATT
* * * * * **
8196276 TTTATCCTTATTATTGTT-CTTTCAGAAATTAAAATTTGTACATCGTTAAATACTTTAAACCCGA
129 TTTATCCTTACTATTATTCCTTT-ATAAATTAAAATTTGTAAACCG-TAAATACTTTAAACTTGA
8196340 GAATATAAATTTAAATGT
192 GAATATAAATTTAAATGT
8196358 CTAATTTTCC
Statistics
Matches: 2685, Mismatches: 453, Indels: 255
0.79 0.13 0.08
Matches are distributed among these distances:
496 18 0.01
497 86 0.03
498 244 0.09
499 49 0.02
500 132 0.05
501 161 0.06
502 227 0.08
503 559 0.21
504 253 0.09
505 329 0.12
506 131 0.05
507 5 0.00
508 1 0.00
509 2 0.00
511 1 0.00
512 1 0.00
513 2 0.00
516 3 0.00
517 4 0.00
518 3 0.00
520 2 0.00
521 1 0.00
522 4 0.00
523 5 0.00
524 2 0.00
525 2 0.00
526 6 0.00
527 4 0.00
528 1 0.00
529 2 0.00
531 3 0.00
532 4 0.00
533 3 0.00
536 2 0.00
537 1 0.00
538 1 0.00
540 1 0.00
541 1 0.00
542 3 0.00
543 11 0.00
544 9 0.00
545 3 0.00
546 396 0.15
547 7 0.00
ACGTcount: A:0.35, C:0.11, G:0.07, T:0.47
Consensus pattern (501 bp):
GTTACGTTAAATCTCACATGTTTACGTTAATATTTTGACAATGCTTGTTCTACTTTTATAATTTT
TTACGTTAATTCTTATTACTTTACATCAAGGTTTTTCAACTACTAATTTTCACTATAATTATTTT
TATCCTTACTATTATTCCTTTATAAATTAAAATTTGTAAACCGTAAATACTTTAAACTTGAGAAT
ATAAATTTAAATGTTTATTTTTTAAAAAAATTATATTTATTTGACATAATTGATTTATTACGTTA
AATCTCACACATTTATATCAATATTTTAACAATATTTGTTCTGCCTTTATAATTTTTTACGTTAA
TTCTTATATTTTACGTCAAGGTTTTTCAACTACTAATTTTCATTATAATTATTTTTATCCTTACT
ATTATTCATTTATAAATTAAAATTTGTAAACCATTAAATACTTTAAACTCGAGAATATAAATTTA
AATATTTAATTTTTAAAAAATTATGTTTATTTGACATAATTAACTT
Found at i:8194065 original size:17 final size:17
Alignment explanation
Indices: 8194043--8194075 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
8194033 TCATTTATAA
8194043 ATTAAA-ATTTGTAAACC
1 ATTAAATATTT-TAAACC
8194060 ATTAAATATTTTAAAC
1 ATTAAATATTTTAAAC
8194076 TCGAGAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.48, C:0.09, G:0.03, T:0.39
Consensus pattern (17 bp):
ATTAAATATTTTAAACC
Found at i:8194097 original size:546 final size:548
Alignment explanation
Indices: 8193030--8194118 Score: 1947
Period size: 546 Copynumber: 2.0 Consensus size: 548
8193020 TTTATATTCA
8193030 AGAATATAAATTTAAATGTTTAATTTTTAAAAAATTATTTTTATTTGATATAATTGACTTAGTAC
1 AGAATATAAATTTAAATGTTTAATTTTTAAAAAATTATTTTTATTTGATATAATTGACTTAGTAC
8193095 GTTAAATCTCACATGTTTACGTTAATATTTTGACAATTCTTGTTCTACTTTTATAATTTTTTACG
66 GTTAAATCTCACATGTTTACGTTAATATTTTGACAATTCTTGTTCTACTTTTATAATTTTTTACG
*
8193160 TTAATTCTTATTACTTTACATCAAGGTTTTTCAATTAGTAATTTTCACTATAATTATTTTTATCC
131 TTAATTCTTATTACTTTACATCAAGGTTTTTCAACTAGTAATTTTCACTATAATTATTTTTATCC
*
8193225 TTACTATTATTTATTTATAAATTAAAATTTATAAACCGTAATATACTTAAAACTTGATAATATAA
196 TTACTATTATTCATTTATAAATTAAAATTTATAAACCGTAATATACTTAAAACTTGATAATATAA
8193290 CTTTAAAAGTTTATGTTTTGAAAAAATTATGTTTGTATGACATAATTGATTTACTACGTTAAATC
261 CTTTAAAAGTTTATGTTTTGAAAAAATTATGTTTGTATGACATAATTGATTTACTACGTTAAATC
* *
8193355 TCACACGTTTATATCAATATTTTAACAATAATCGTTCTGCCTTTATAATTTTTTATATTAATTCT
326 TCACACGTTTATATCAATATTTTAACAATAATCGTTCTGCCTTTATAAGTTTTTACATTAATTCT
*
8193420 TACTATTTTACTTCAAAGTTTTTCAACTACCAATTTTTATTATAATTTTTTTTGTCCTTACTACT
391 TACTATTTTACGTCAAAGTTTTTCAACTACCAATTTTTATTATAATTTTTTTTGTCCTTACTACT
* *
8193485 ATTCATTTATAAATTAAAATTTGTAAACCATTAAATATTTTAAACTTGAGAATATAAATTTAAAT
456 ATTCATTTATAAATTAAAATTTGTAAACCATTAAATATTTTAAACTCGAGAATATAAATATAAAT
8193550 ATTT-ATTATTTAAAAAATTATATNACATG
521 ATTTAATTATTT-AAAAATTATAT-ACATG
8193579 AGAATAT-AATTTAAATGTTTAA-TTTT-AAAAATTATTTTTATTTGATATAATTGACTTAGTAC
1 AGAATATAAATTTAAATGTTTAATTTTTAAAAAATTATTTTTATTTGATATAATTGACTTAGTAC
8193641 GTTAAATCTCACATGTTTACGTTAATATTTTGACAATTCTTGTTCTACTTTTATAATTTTTTACG
66 GTTAAATCTCACATGTTTACGTTAATATTTTGACAATTCTTGTTCTACTTTTATAATTTTTTACG
* * *
8193706 TTAATTCTTATTACTTTACATCAAGGTTTTTCAACTATTAATTTTTACTGTAATTATTTTTATCC
131 TTAATTCTTATTACTTTACATCAAGGTTTTTCAACTAGTAATTTTCACTATAATTATTTTTATCC
* *
8193771 TTACTATTGTTCCA-TTATAGATTAAAATTTATAAACCGTAATATACTTAAAACTTGATAATATA
196 TTACTATTATT-CATTTATAAATTAAAATTTATAAACCGTAATATACTTAAAACTTGATAATATA
8193835 ACTTTAAAAGTTTATGTTTTGAAAAAATTATGTTTGTATGACATAATTGATTTACTACGTTAAAT
260 ACTTTAAAAGTTTATGTTTTGAAAAAATTATGTTTGTATGACATAATTGATTTACTACGTTAAAT
*
8193900 CTCACACGTTTATATCAATATTTTAACAATAATCGTTCTGCCTTTATAAGTTTTTACGTTAATTC
325 CTCACACGTTTATATCAATATTTTAACAATAATCGTTCTGCCTTTATAAGTTTTTACATTAATTC
* * **
8193965 TTA-TAATTTTACGTCAAGGTTTTTTAACTATTAATTTTTATTATAATTTTTTTTGTCCTTACTA
390 TTACT-ATTTTACGTCAAAGTTTTTCAACTACCAATTTTTATTATAATTTTTTTTGTCCTTACTA
8194029 CTATTCATTTATAAATTAAAATTTGTAAACCATTAAATATTTTAAACTCGAGAATATAAATATAA
454 CTATTCATTTATAAATTAAAATTTGTAAACCATTAAATATTTTAAACTCGAGAATATAAATATAA
8194094 ATATTTAATTATTTAAAAATTATAT
519 ATATTTAATTATTTAAAAATTATAT
8194119 TTATTTTACA
Statistics
Matches: 520, Mismatches: 17, Indels: 9
0.95 0.03 0.02
Matches are distributed among these distances:
545 1 0.00
546 485 0.93
547 12 0.02
548 15 0.03
549 7 0.01
ACGTcount: A:0.36, C:0.10, G:0.07, T:0.48
Consensus pattern (548 bp):
AGAATATAAATTTAAATGTTTAATTTTTAAAAAATTATTTTTATTTGATATAATTGACTTAGTAC
GTTAAATCTCACATGTTTACGTTAATATTTTGACAATTCTTGTTCTACTTTTATAATTTTTTACG
TTAATTCTTATTACTTTACATCAAGGTTTTTCAACTAGTAATTTTCACTATAATTATTTTTATCC
TTACTATTATTCATTTATAAATTAAAATTTATAAACCGTAATATACTTAAAACTTGATAATATAA
CTTTAAAAGTTTATGTTTTGAAAAAATTATGTTTGTATGACATAATTGATTTACTACGTTAAATC
TCACACGTTTATATCAATATTTTAACAATAATCGTTCTGCCTTTATAAGTTTTTACATTAATTCT
TACTATTTTACGTCAAAGTTTTTCAACTACCAATTTTTATTATAATTTTTTTTGTCCTTACTACT
ATTCATTTATAAATTAAAATTTGTAAACCATTAAATATTTTAAACTCGAGAATATAAATATAAAT
ATTTAATTATTTAAAAATTATATACATG
Found at i:8199462 original size:20 final size:20
Alignment explanation
Indices: 8199437--8199482 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
8199427 NNNNTAAACC
*
8199437 TCAAATCATACTTCAATAAG
1 TCAAATCATACTCCAATAAG
*
8199457 TCAAATTATACTCCAATAAG
1 TCAAATCATACTCCAATAAG
8199477 TCAAAT
1 TCAAAT
8199483 GGGGCCAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.46, C:0.20, G:0.04, T:0.30
Consensus pattern (20 bp):
TCAAATCATACTCCAATAAG
Found at i:8200352 original size:16 final size:17
Alignment explanation
Indices: 8200322--8200354 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
8200312 AAAATATTAT
*
8200322 TTTTTTCAATTAAAATG
1 TTTTTTCAATAAAAATG
8200339 TTTTTT-AATAAAAATG
1 TTTTTTCAATAAAAATG
8200355 AGATTTATAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.39, C:0.03, G:0.06, T:0.52
Consensus pattern (17 bp):
TTTTTTCAATAAAAATG
Found at i:8205159 original size:251 final size:247
Alignment explanation
Indices: 8204713--8205632 Score: 844
Period size: 243 Copynumber: 3.7 Consensus size: 247
8204703 GACATGAACG
* * * *
8204713 TCAAAATATTGACATGAACATA-TG-AGATTTAACGTAATAAATTAATTATATCAAATAAACATA
1 TCAAAATATTGACGT-AA-ATAGTGTAGATTTAACGTAATAAGTCAATAATATCAAATAAACATA
* * * **
8204776 ATTTTTTTTAGAAAATTATATATTTAAATTCATATTCTCGAGTTTAAAGGATTTAATGGCTTACA
64 A--TTTTTT-GAAAATTAAATATTTAAATTTATATTCTCGAGTTTAAAGTATTTAATGATTTACA
* * * *
8204841 AATTTTAATTTTATAAGGAATAATAGTAAGAATAAAAATAATTATAGTAAAAATTAGCAGTTGAA
126 AATTTTAATTTTA-AATGAATAATAATAAGGATAAAAATAATTATAGTGAAAATTAGCAGTTGAA
* * * * *
8204906 AAATCCTGACGTAAATCGTTAAGAATTAAAGTTAAAAATTATAAAAGTGGACCAAGTATTA
190 AAATCTTGAC-TAAATCG-TAAGAATTAAAGTAAAAAATTATAAAAGT-GAACAAGCAATA
*
8204967 TCAAAATATTGACGTAAAT-GTGTAAGATTTAACGTAATAAGTCAATAATGTCAAATAAACATAA
1 TCAAAATATTGACGTAAATAGTGT-AGATTTAACGTAATAAGTCAATAATATCAAATAAACATAA
*
8205031 TTTTTT-AGAAATTAAATATTTAAATTTATATTCTTGAGTTTAAAGTATTTAATGATTTACAAAT
65 TTTTTTGA-AAATTAAATATTTAAATTTATATTCTCGAGTTTAAAGTATTTAATGATTTACAAAT
*
8205095 TTTAATTTATAAATGAATAATAATATGGATAAAAATAATTATAGTGAAAATTAGCAGTTGAAAAA
129 TTTAATTT-TAAATGAATAATAATAAGGATAAAAATAATTATAGTGAAAATTAGCAGTTGAAAAA
* * * * *
8205160 TCTTGA-T--ATAGTAAGAATTAATGTAAAAAAATAT-AAAG-GTAGAAGCAATA
193 TCTTGACTAAATCGTAAGAATTAAAGTAAAAAATTATAAAAGTGAACAAGCAATA
* * * * * *
8205210 TCAAAATATTAACGGAAACTAGTGT-GATTTAATGTAACAAGTCAA-ATATATCGAATAAATATA
1 TCAAAATATTGACGTAAA-TAGTGTAGATTTAACGTAATAAGTCAATA-ATATCAAATAAACATA
* * * * *
8205273 ATTTTTTGAAAATTAAATATTTAATTTTATATTCTTGAGTTTAAAGTATTTAA-AAGTTAGAAAA
64 ATTTTTTGAAAATTAAATATTTAAATTTATATTCTCGAGTTTAAAGTATTTAATGA-TT-TACAA
* * * * * * *
8205337 ATTTT-CTTTTAAATGAATAATAGTAAGGATAAAAACAATTATAGCGGAAATTAGTAG-TGAAAT
127 ATTTTAATTTTAAATGAATAATAATAAGGATAAAAATAATTATAGTGAAAATTAGCAGTTGAAAA
* * * ** * *
8205400 ATATTGACTTAAAGCACTAAGAATTAGCGTGAAAAATTATAAAGGTGAATCAAGCAATA
192 ATCTTGAC-TAAATC-GTAAGAATTAAAGTAAAAAATTATAAAAGTGAA-CAAGCAATA
* * *
8205459 TCAAAATATTGACGT-AATCGTGTGAGATTTAAC---ATAA--C--T--TGTCAAAATAAATATA
1 TCAAAATATTGACGTAAATAGTGT-AGATTTAACGTAATAAGTCAATAATATC-AAATAAACATA
* * * * * * * **
8205514 ATTTTTGTGAAACTTAAACATTTAAATTTTTATTATCGAGTTTAAAGTATTTTACGGTTTATGAA
64 ATTTTT-TGAAAATTAAATATTTAAATTTATATTCTCGAGTTTAAAGTATTTAATGATTTACAAA
** *** *
8205579 TTTTAATTTATGTATGAATAATAATAAATTTAAAAATAATTATAGTTAAAATTA
128 TTTTAATTT-TAAATGAATAATAATAAGGATAAAAATAATTATAGTGAAAATTA
8205633 TTATTTATTA
Statistics
Matches: 553, Mismatches: 86, Indels: 65
0.79 0.12 0.09
Matches are distributed among these distances:
240 3 0.01
241 34 0.06
242 89 0.16
243 144 0.26
244 11 0.02
245 9 0.02
246 42 0.08
247 11 0.02
248 4 0.01
249 29 0.05
250 1 0.00
251 112 0.20
252 12 0.02
253 2 0.00
254 50 0.09
ACGTcount: A:0.46, C:0.06, G:0.12, T:0.36
Consensus pattern (247 bp):
TCAAAATATTGACGTAAATAGTGTAGATTTAACGTAATAAGTCAATAATATCAAATAAACATAAT
TTTTTGAAAATTAAATATTTAAATTTATATTCTCGAGTTTAAAGTATTTAATGATTTACAAATTT
TAATTTTAAATGAATAATAATAAGGATAAAAATAATTATAGTGAAAATTAGCAGTTGAAAAATCT
TGACTAAATCGTAAGAATTAAAGTAAAAAATTATAAAAGTGAACAAGCAATA
Found at i:8206498 original size:19 final size:19
Alignment explanation
Indices: 8206458--8206512 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
8206448 AATATGCTTT
* *
8206458 ATAATACTTATTATAGTTAA
1 ATAATATTTAATATA-TTAA
8206478 ATAATATTTAATATATTAA
1 ATAATATTTAATATATTAA
8206497 ATAATATTTAA-ATATT
1 ATAATATTTAATATATT
8206513 TTCATTTCCC
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
18 5 0.15
19 15 0.45
20 13 0.39
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (19 bp):
ATAATATTTAATATATTAA
Found at i:8206507 original size:11 final size:11
Alignment explanation
Indices: 8206474--8206510 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
8206464 CTTATTATAG
8206474 TTAAATAATAT
1 TTAAATAATAT
8206485 TT-AAT-ATA-
1 TTAAATAATAT
8206493 TTAAATAATAT
1 TTAAATAATAT
8206504 TTAAATA
1 TTAAATA
8206511 TTTTCATTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
8 2 0.09
9 6 0.26
10 6 0.26
11 9 0.39
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (11 bp):
TTAAATAATAT
Found at i:8211522 original size:105 final size:105
Alignment explanation
Indices: 8211399--8211622 Score: 421
Period size: 105 Copynumber: 2.1 Consensus size: 105
8211389 CCACCGCCAC
*
8211399 CACCACCCCCTCCTCCAAGTCCATTCTACTTCAACTCACCACCTCCACCCCTACAACCACCTCCT
1 CACCACCACCTCCTCCAAGTCCATTCTACTTCAACTCACCACCTCCACCCCTACAACCACCTCCT
*
8211464 CCACCTCCAACTAATTCACCACCACCGCCACTGTTGCCGT
66 CCACCTCCAACTAATTCACCACCACCGCCACTGTCGCCGT
*
8211504 CACCACCACCTCCTCCAAGTCCATTCTACTTCAACTCACCACCTCCACCCCTACAATCACCTCCT
1 CACCACCACCTCCTCCAAGTCCATTCTACTTCAACTCACCACCTCCACCCCTACAACCACCTCCT
8211569 CCACCTCCAACTAATTCACCACCACCGCCACTGTCGCCGT
66 CCACCTCCAACTAATTCACCACCACCGCCACTGTCGCCGT
8211609 CACCACCACCTCCT
1 CACCACCACCTCCT
8211623 ACATACTCTC
Statistics
Matches: 116, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
105 116 1.00
ACGTcount: A:0.23, C:0.53, G:0.04, T:0.20
Consensus pattern (105 bp):
CACCACCACCTCCTCCAAGTCCATTCTACTTCAACTCACCACCTCCACCCCTACAACCACCTCCT
CCACCTCCAACTAATTCACCACCACCGCCACTGTCGCCGT
Found at i:8211563 original size:21 final size:24
Alignment explanation
Indices: 8211539--8211591 Score: 67
Period size: 21 Copynumber: 2.3 Consensus size: 24
8211529 CTACTTCAAC
*
8211539 TCACCACCTCCACC-CCTAC-AA-
1 TCACCACCTCCACCTCCAACTAAT
*
8211560 TCACCTCCTCCACCTCCAACTAAT
1 TCACCACCTCCACCTCCAACTAAT
8211584 TCACCACC
1 TCACCACC
8211592 ACCGCCACTG
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
21 13 0.50
22 4 0.15
23 2 0.08
24 7 0.27
ACGTcount: A:0.26, C:0.55, G:0.00, T:0.19
Consensus pattern (24 bp):
TCACCACCTCCACCTCCAACTAAT
Found at i:8211663 original size:3 final size:3
Alignment explanation
Indices: 8211655--8211681 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
8211645 TGAATTCACA
8211655 ACC ACC ACC ACC ACC ACC ACC ACC ACC
1 ACC ACC ACC ACC ACC ACC ACC ACC ACC
8211682 TCTACCTCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.67, G:0.00, T:0.00
Consensus pattern (3 bp):
ACC
Found at i:8221563 original size:17 final size:18
Alignment explanation
Indices: 8221529--8221564 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
8221519 TAATATAACG
8221529 AAGAAAATAAAAAATAAA
1 AAGAAAATAAAAAATAAA
*
8221547 AAGAAAA-AAATAATAAA
1 AAGAAAATAAAAAATAAA
8221564 A
1 A
8221565 TTTTAAAGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.83, C:0.00, G:0.06, T:0.11
Consensus pattern (18 bp):
AAGAAAATAAAAAATAAA
Found at i:8224677 original size:45 final size:45
Alignment explanation
Indices: 8224604--8224765 Score: 200
Period size: 45 Copynumber: 3.6 Consensus size: 45
8224594 CTATGATGTT
* * *
8224604 ACACGCCATGTATAAAAATCTGTAACAAGCCATGGTTAGTGTGTTG
1 ACACGCCATGTACAAAAACCTGTGACAAGCCATGGTTAGTGTG-TG
*
8224650 -CACGTCATGTACAAAAACCTGTGACAAGCCATGGTTAGTGTGTG
1 ACACGCCATGTACAAAAACCTGTGACAAGCCATGGTTAGTGTGTG
* * * *
8224694 ACATGCCATGTACAAAAATCTGGGACAAGCCATGGTTAGCGTGTG
1 ACACGCCATGTACAAAAACCTGTGACAAGCCATGGTTAGTGTGTG
** * *
8224739 ACACATCATATACAAAAACATGTGACA
1 ACACGCCATGTACAAAAACCTGTGACA
8224766 CACCATGTAC
Statistics
Matches: 99, Mismatches: 16, Indels: 3
0.84 0.14 0.03
Matches are distributed among these distances:
44 2 0.02
45 97 0.98
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.24
Consensus pattern (45 bp):
ACACGCCATGTACAAAAACCTGTGACAAGCCATGGTTAGTGTGTG
Found at i:8224796 original size:24 final size:24
Alignment explanation
Indices: 8224735--8224789 Score: 83
Period size: 24 Copynumber: 2.3 Consensus size: 24
8224725 ATGGTTAGCG
*
8224735 TGTGACACATCATATACAAAAACA
1 TGTGACACATCATGTACAAAAACA
* *
8224759 TGTGACACACCATGTACAAAAACT
1 TGTGACACATCATGTACAAAAACA
8224783 TGTGACA
1 TGTGACA
8224790 AGTCATGGTT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.44, C:0.22, G:0.13, T:0.22
Consensus pattern (24 bp):
TGTGACACATCATGTACAAAAACA
Found at i:8224808 original size:45 final size:45
Alignment explanation
Indices: 8224759--8224931 Score: 222
Period size: 45 Copynumber: 3.8 Consensus size: 45
8224749 TACAAAAACA
* *
8224759 TGTGACACACCATGTACAAAAACTTGTGACAAGTCATGGTTAGTG
1 TGTGACACACCATGTACAAAAACTTGTGACAAGCCATGGTTAGCG
* *
8224804 TGTGACACATCATGTACAAAAGCTTGTGACAAGCCATGGTTAGCG
1 TGTGACACACCATGTACAAAAACTTGTGACAAGCCATGGTTAGCG
* ** * * *
8224849 TGTTACACGTCATGTACAAAAACCTGTGACAAGCTAAGGTTAGCG
1 TGTGACACACCATGTACAAAAACTTGTGACAAGCCATGGTTAGCG
* *
8224894 TGTGACACACCATATAC-AAAAGTCTGTGACAAGCCATG
1 TGTGACACACCATGTACAAAAACT-TGTGACAAGCCATG
8224932 TACAAAAACT
Statistics
Matches: 109, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
44 4 0.04
45 105 0.96
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (45 bp):
TGTGACACACCATGTACAAAAACTTGTGACAAGCCATGGTTAGCG
Found at i:8224808 original size:114 final size:114
Alignment explanation
Indices: 8224655--8224879 Score: 335
Period size: 114 Copynumber: 2.0 Consensus size: 114
8224645 TGTTGCACGT
** *
8224655 CATGTACAAAAACCTGTGACAAGCCATGGTTAGTGTGTGACATGCCATGTACAAAA-ATCTGGGA
1 CATGTACAAAAACCTGTGACAAGCCATGGTTAGTGTGTGACACACCATGTACAAAAGCT-TGGGA
8224719 CAAGCCATGGTTAGCGTGTGACACATCATATACAAAAACATGTGACACAC
65 CAAGCCATGGTTAGCGTGTGACACATCATATACAAAAACATGTGACACAC
* * * *
8224769 CATGTACAAAAACTTGTGACAAGTCATGGTTAGTGTGTGACACATCATGTACAAAAGCTTGTGAC
1 CATGTACAAAAACCTGTGACAAGCCATGGTTAGTGTGTGACACACCATGTACAAAAGCTTGGGAC
* * * *
8224834 AAGCCATGGTTAGCGTGTTACACGTCATGTACAAAAACCTGTGACA
66 AAGCCATGGTTAGCGTGTGACACATCATATACAAAAACATGTGACA
8224880 AGCTAAGGTT
Statistics
Matches: 99, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
114 98 0.99
115 1 0.01
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.24
Consensus pattern (114 bp):
CATGTACAAAAACCTGTGACAAGCCATGGTTAGTGTGTGACACACCATGTACAAAAGCTTGGGAC
AAGCCATGGTTAGCGTGTGACACATCATATACAAAAACATGTGACACAC
Found at i:8224841 original size:69 final size:69
Alignment explanation
Indices: 8224690--8224841 Score: 209
Period size: 69 Copynumber: 2.2 Consensus size: 69
8224680 ATGGTTAGTG
*
8224690 TGTGACATGCCATGTACAAAAATCTGGGACAAGCCATGGTTAGCGTGTGACACATCATATACAAA
1 TGTGACAAGCCATGTACAAAAATCTGGGACAAGCCATGGTTAGCGTGTGACACATCATATACAAA
8224755 AACA
66 AACA
* * * *
8224759 TGTGACACA-CCATGTACAAAAA-CTTGTGACAAGTCATGGTTAGTGTGTGACACATCATGTACA
1 TGTGACA-AGCCATGTACAAAAATC-TGGGACAAGCCATGGTTAGCGTGTGACACATCATATACA
* *
8224822 AAAGCT
64 AAAACA
8224828 TGTGACAAGCCATG
1 TGTGACAAGCCATG
8224842 GTTAGCGTGT
Statistics
Matches: 73, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
68 2 0.03
69 71 0.97
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.24
Consensus pattern (69 bp):
TGTGACAAGCCATGTACAAAAATCTGGGACAAGCCATGGTTAGCGTGTGACACATCATATACAAA
AACA
Found at i:8224898 original size:159 final size:160
Alignment explanation
Indices: 8224599--8224946 Score: 472
Period size: 159 Copynumber: 2.2 Consensus size: 160
8224589 ACACGCTATG
* * * * *
8224599 ATGTTACACGCCATGTATAAAAA-TCTGTAACAAGCCATGGTTAGTGTGTTGCACGTCATGTACA
1 ATGTGACACACCATGTACAAAAACT-TGTGACAAGCCATGGTTAGTGTGTTGCACATCATGTACA
* * * *
8224663 AAAACCTGTGACAAGCCATGGTTAGTGTGTGACATGCCATGTACAAAAATCTGGGACAAGCCATG
65 AAAACCTGTGACAAGCCATGGTTAGCGTGTGACACGCCATGTACAAAAACCTGGGACAAGCCAAG
*
8224728 GTTAGCGTGTGACACATCATATACAAAA-AC
130 GTTAGCGTGTGACACACCATATACAAAAGAC
*
8224758 ATGTGACACACCATGTACAAAAACTTGTGACAAGTCATGGTTAGTGTG-TGACACATCATGTACA
1 ATGTGACACACCATGTACAAAAACTTGTGACAAGCCATGGTTAGTGTGTTG-CACATCATGTACA
* * * * * *
8224822 AAAGCTTGTGACAAGCCATGGTTAGCGTGTTACACGTCATGTACAAAAACCTGTGACAAGCTAAG
65 AAAACCTGTGACAAGCCATGGTTAGCGTGTGACACGCCATGTACAAAAACCTGGGACAAGCCAAG
*
8224887 GTTAGCGTGTGACACACCATATACAAAAGTC
130 GTTAGCGTGTGACACACCATATACAAAAGAC
8224918 -TGTGACA-AGCCATGTACAAAAACTTGTGA
1 ATGTGACACA-CCATGTACAAAAACTTGTGA
8224947 AACTTCAAAT
Statistics
Matches: 167, Mismatches: 18, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
158 3 0.02
159 162 0.97
160 2 0.01
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.25
Consensus pattern (160 bp):
ATGTGACACACCATGTACAAAAACTTGTGACAAGCCATGGTTAGTGTGTTGCACATCATGTACAA
AAACCTGTGACAAGCCATGGTTAGCGTGTGACACGCCATGTACAAAAACCTGGGACAAGCCAAGG
TTAGCGTGTGACACACCATATACAAAAGAC
Found at i:8247982 original size:24 final size:27
Alignment explanation
Indices: 8247955--8248005 Score: 72
Period size: 24 Copynumber: 2.0 Consensus size: 27
8247945 ATGATTGTTT
8247955 TTAATTATAAA-A-AAAT-ATAAAAAA
1 TTAATTATAAATAGAAATAATAAAAAA
*
8247979 TTAATTTTAAATAGAAATAATAAAAAA
1 TTAATTATAAATAGAAATAATAAAAAA
8248006 ATTCTTTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 10 0.43
25 1 0.04
26 4 0.17
27 8 0.35
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (27 bp):
TTAATTATAAATAGAAATAATAAAAAA
Found at i:8252577 original size:25 final size:24
Alignment explanation
Indices: 8252549--8252623 Score: 60
Period size: 25 Copynumber: 2.9 Consensus size: 24
8252539 TCTAAGTTTG
8252549 ATTTTTCTTTTATTTATTCTTATGT
1 ATTTTT-TTTTATTTATTCTTATGT
* * *
8252574 ATTTTTTATTTATGTATGCTTTTGTT
1 ATTTTTT-TTTATTTATTCTTATG-T
*
8252600 TTTAAGTTTTTTTATTTATTCTTA
1 ATT---TTTTTTTATTTATTCTTA
8252624 CTTAGAGGTT
Statistics
Matches: 38, Mismatches: 7, Indels: 7
0.73 0.13 0.13
Matches are distributed among these distances:
24 1 0.03
25 19 0.50
26 3 0.08
28 11 0.29
29 4 0.11
ACGTcount: A:0.17, C:0.05, G:0.07, T:0.71
Consensus pattern (24 bp):
ATTTTTTTTTATTTATTCTTATGT
Found at i:8252588 original size:15 final size:15
Alignment explanation
Indices: 8252568--8252618 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
8252558 TTATTTATTC
8252568 TTATGTATTTTTTAT
1 TTATGTATTTTTTAT
*
8252583 TTATGTATGCTTTTGTTT
1 TTATGTAT--TTTT-TAT
*
8252601 TTAAGT-TTTTTTAT
1 TTATGTATTTTTTAT
8252615 TTAT
1 TTAT
8252619 TCTTACTTAG
Statistics
Matches: 29, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
14 5 0.17
15 12 0.41
17 5 0.17
18 7 0.24
ACGTcount: A:0.18, C:0.02, G:0.10, T:0.71
Consensus pattern (15 bp):
TTATGTATTTTTTAT
Found at i:8254243 original size:27 final size:25
Alignment explanation
Indices: 8254197--8254246 Score: 64
Period size: 27 Copynumber: 1.9 Consensus size: 25
8254187 TGATAACCTA
*
8254197 TTTAAACAATTAAAATAATTAAAAT
1 TTTAAACAATTAAAACAATTAAAAT
*
8254222 TTTAAACATAATTAATACAATTAAA
1 TTTAAAC--AATTAAAACAATTAAA
8254247 TTAAAATAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 7 0.33
27 14 0.67
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (25 bp):
TTTAAACAATTAAAACAATTAAAAT
Found at i:8254693 original size:15 final size:15
Alignment explanation
Indices: 8254673--8254711 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
8254663 GTTGAGAATA
**
8254673 TGATTGCTGGGTATG
1 TGATTGCTGGAAATG
*
8254688 TGATTGTTGGAAATG
1 TGATTGCTGGAAATG
8254703 TGATTGCTG
1 TGATTGCTG
8254712 AAAAGATAAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.18, C:0.05, G:0.36, T:0.41
Consensus pattern (15 bp):
TGATTGCTGGAAATG
Found at i:8254961 original size:15 final size:15
Alignment explanation
Indices: 8254941--8254996 Score: 58
Period size: 15 Copynumber: 3.5 Consensus size: 15
8254931 AAAATAATGT
*
8254941 AATATTTTAATATTA
1 AATATTTAAATATTA
8254956 AATATTTAAATATTAA
1 AATATTTAAATATT-A
*
8254972 AATATGTAAAATTATTA
1 AATAT-TTAAA-TATTA
*
8254989 AATGTTTA
1 AATATTTA
8254997 TTTTTACCTT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
15 13 0.38
16 8 0.24
17 9 0.26
18 4 0.12
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (15 bp):
AATATTTAAATATTA
Found at i:8254983 original size:9 final size:8
Alignment explanation
Indices: 8254949--8254990 Score: 50
Period size: 8 Copynumber: 5.1 Consensus size: 8
8254939 GTAATATTTT
8254949 AATATT-A
1 AATATTAA
*
8254956 AATATTTA
1 AATATTAA
8254964 AATATTAA
1 AATATTAA
8254972 AATATGTAA
1 AATAT-TAA
8254981 AATTATTAA
1 AA-TATTAA
8254990 A
1 A
8254991 TGTTTATTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
7 6 0.19
8 13 0.42
9 9 0.29
10 3 0.10
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.40
Consensus pattern (8 bp):
AATATTAA
Found at i:8256177 original size:39 final size:41
Alignment explanation
Indices: 8256121--8256202 Score: 105
Period size: 42 Copynumber: 2.0 Consensus size: 41
8256111 ACGTACACGT
* *
8256121 ACACGTTTAATACACGTGT-A-ACACGACACGACACGATTA
1 ACACGTTTAATAAACGTGTAATAAACGACACGACACGATTA
* *
8256160 ACACGTTTATTAAACGTGTCAATAAACGACATGACACGATTA
1 ACACGTTTAATAAACGTGT-AATAAACGACACGACACGATTA
8256202 A
1 A
8256203 TAACATGATC
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
39 17 0.47
41 1 0.03
42 18 0.50
ACGTcount: A:0.40, C:0.22, G:0.15, T:0.23
Consensus pattern (41 bp):
ACACGTTTAATAAACGTGTAATAAACGACACGACACGATTA
Found at i:8256244 original size:20 final size:20
Alignment explanation
Indices: 8256219--8256308 Score: 64
Period size: 20 Copynumber: 4.7 Consensus size: 20
8256209 GATCAACACG
8256219 ATTAAATAAAAATATTTATA
1 ATTAAATAAAAATATTTATA
*
8256239 ATTAAAT-ATAAT-TTTATTA
1 ATTAAATAAAAATATTTA-TA
* ** *
8256258 TTTAAATTTAAA-ATCTATA
1 ATTAAATAAAAATATTTATA
*
8256277 ATT--ATAAAAATAATTATA
1 ATTAAATAAAAATATTTATA
* *
8256295 ATAAAACAAAAATA
1 ATTAAATAAAAATA
8256309 ATAATAACAT
Statistics
Matches: 52, Mismatches: 12, Indels: 12
0.68 0.16 0.16
Matches are distributed among these distances:
17 5 0.10
18 11 0.21
19 16 0.31
20 20 0.38
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (20 bp):
ATTAAATAAAAATATTTATA
Found at i:8257661 original size:26 final size:26
Alignment explanation
Indices: 8257631--8257715 Score: 77
Period size: 26 Copynumber: 3.3 Consensus size: 26
8257621 ATTTTAATTC
*
8257631 TAATTTTACCACTAGAAGTGGATGGA
1 TAATTTTACCACTAGAAGTAGATGGA
* **
8257657 TAATTTTACCA-TCAGAATCTA-A-AAA
1 TAATTTTACCACT-AGAA-GTAGATGGA
* *
8257682 TAATTTTACCACCAGAAGCAGATGGA
1 TAATTTTACCACTAGAAGTAGATGGA
8257708 TAATTTTA
1 TAATTTTA
8257716 TCACCAAAAT
Statistics
Matches: 45, Mismatches: 9, Indels: 10
0.70 0.14 0.16
Matches are distributed among these distances:
24 1 0.02
25 18 0.40
26 25 0.56
27 1 0.02
ACGTcount: A:0.40, C:0.14, G:0.14, T:0.32
Consensus pattern (26 bp):
TAATTTTACCACTAGAAGTAGATGGA
Found at i:8257691 original size:51 final size:51
Alignment explanation
Indices: 8257631--8257759 Score: 177
Period size: 51 Copynumber: 2.5 Consensus size: 51
8257621 ATTTTAATTC
* * *
8257631 TAATTTTACCACTAGAAGTGGATGGATAATTTTACCATCAGAATCTAAAAA
1 TAATTTTACCACCAGAAGTGGATGGATAATTTTACCACCAAAATCTAAAAA
** * *
8257682 TAATTTTACCACCAGAAGCAGATGGATAATTTTATCACCAAAATCTAAGAA
1 TAATTTTACCACCAGAAGTGGATGGATAATTTTACCACCAAAATCTAAAAA
* *
8257733 TAATTTTGCCACCAAAAGTGGATGGAT
1 TAATTTTACCACCAGAAGTGGATGGAT
8257760 GCCATAACCC
Statistics
Matches: 67, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
51 67 1.00
ACGTcount: A:0.40, C:0.16, G:0.15, T:0.29
Consensus pattern (51 bp):
TAATTTTACCACCAGAAGTGGATGGATAATTTTACCACCAAAATCTAAAAA
Found at i:8257745 original size:25 final size:25
Alignment explanation
Indices: 8257656--8257749 Score: 91
Period size: 25 Copynumber: 3.7 Consensus size: 25
8257646 AAGTGGATGG
* * *
8257656 ATAATTTTACCATCAGAATCTAAAA
1 ATAATTTTACCACCAAAATCTAAGA
* * *
8257681 ATAATTTTACCACCAGAAGC-AGATGG
1 ATAATTTTACCACCAAAATCTA-A-GA
*
8257707 ATAATTTTATCACCAAAATCTAAGA
1 ATAATTTTACCACCAAAATCTAAGA
*
8257732 ATAATTTTGCCACCAAAA
1 ATAATTTTACCACCAAAA
8257750 GTGGATGGAT
Statistics
Matches: 56, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
24 1 0.02
25 36 0.64
26 18 0.32
27 1 0.02
ACGTcount: A:0.45, C:0.18, G:0.09, T:0.29
Consensus pattern (25 bp):
ATAATTTTACCACCAAAATCTAAGA
Found at i:8260645 original size:19 final size:19
Alignment explanation
Indices: 8260621--8260658 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
8260611 ACTTCTTAAC
8260621 CTCAAATCATACTCCAATA
1 CTCAAATCATACTCCAATA
*
8260640 CTCAAATCATACTCTAATA
1 CTCAAATCATACTCCAATA
8260659 AGTCAAATGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.42, C:0.29, G:0.00, T:0.29
Consensus pattern (19 bp):
CTCAAATCATACTCCAATA
Found at i:8268661 original size:18 final size:18
Alignment explanation
Indices: 8268640--8268674 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8268630 TCGTTCTCCC
*
8268640 TTTTTCTCTCTTCGTTCT
1 TTTTTCTCTATTCGTTCT
*
8268658 TTTTTCTTTATTCGTTC
1 TTTTTCTCTATTCGTTC
8268675 CCTCATTGAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.03, C:0.23, G:0.06, T:0.69
Consensus pattern (18 bp):
TTTTTCTCTATTCGTTCT
Found at i:8269291 original size:18 final size:19
Alignment explanation
Indices: 8269258--8269293 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
8269248 CCATTTGGCT
8269258 TATTGGAGAATGATTTGAA
1 TATTGGAGAATGATTTGAA
*
8269277 TATTGGAG-TTGATTTGA
1 TATTGGAGAATGATTTGA
8269294 GGTTTAGAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.31, C:0.00, G:0.28, T:0.42
Consensus pattern (19 bp):
TATTGGAGAATGATTTGAA
Found at i:8271917 original size:25 final size:25
Alignment explanation
Indices: 8271883--8271932 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
8271873 TTAAGTTGGG
8271883 ATTTAACCTAAACACTATCCTTAAA
1 ATTTAACCTAAACACTATCCTTAAA
8271908 ATTTAACCTAAACACTATCCTTAAA
1 ATTTAACCTAAACACTATCCTTAAA
8271933 TACCCAAATC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.44, C:0.24, G:0.00, T:0.32
Consensus pattern (25 bp):
ATTTAACCTAAACACTATCCTTAAA
Found at i:8273006 original size:21 final size:21
Alignment explanation
Indices: 8272980--8273023 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
8272970 TAATGATGAA
*
8272980 GAAAGTCGTGATTCAGAT-AAG
1 GAAAGTAGTGATTCA-ATCAAG
8273001 GAAAGTAGTGATTCAATCAAG
1 GAAAGTAGTGATTCAATCAAG
8273022 GA
1 GA
8273024 TATTGATAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 2 0.10
21 19 0.90
ACGTcount: A:0.41, C:0.09, G:0.27, T:0.23
Consensus pattern (21 bp):
GAAAGTAGTGATTCAATCAAG
Found at i:8277402 original size:28 final size:27
Alignment explanation
Indices: 8277363--8277415 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 27
8277353 ATATCTTGGT
*
8277363 AGTGGAAAATTA-CAATTTTGCCCCTGG
1 AGTGGAAAATTATC-ATTTTACCCCTGG
8277390 AGTGGCAAAATTATCATTTTACCCCT
1 AGTGG-AAAATTATCATTTTACCCCT
8277416 ATATTCCAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
27 5 0.22
28 17 0.74
29 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (27 bp):
AGTGGAAAATTATCATTTTACCCCTGG
Found at i:8277485 original size:20 final size:20
Alignment explanation
Indices: 8277460--8277505 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
8277450 CTTCTAAATC
8277460 TCAAATCATACTCCAATAAG
1 TCAAATCATACTCCAATAAG
*
8277480 TCAAATTATACTCCAATAAG
1 TCAAATCATACTCCAATAAG
8277500 TCAAAT
1 TCAAAT
8277506 GGGAACAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.46, C:0.22, G:0.04, T:0.28
Consensus pattern (20 bp):
TCAAATCATACTCCAATAAG
Found at i:8282886 original size:22 final size:22
Alignment explanation
Indices: 8282843--8282886 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
8282833 TTTAAAACAA
* *
8282843 CTTTAAAACTAAAAACTTTGAT
1 CTTTAAAACCAAAAACTCTGAT
**
8282865 CTTTAAAACCAAAGGCTCTGAT
1 CTTTAAAACCAAAAACTCTGAT
8282887 ACTAATCGAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.32
Consensus pattern (22 bp):
CTTTAAAACCAAAAACTCTGAT
Found at i:8286384 original size:56 final size:56
Alignment explanation
Indices: 8286321--8286440 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
8286311 CTTACAGTAA
8286321 GGTAAAAAATAATCACCTTACTGCAGAATTTGCCTATTTCAAATAGTAATGGATCT
1 GGTAAAAAATAATCACCTTACTGCAGAATTTGCCTATTTCAAATAGTAATGGATCT
8286377 GGTAAAAAATAATCACCTTACTGCAGAATTTGCCTATTTCAAATAGTAATGGATCT
1 GGTAAAAAATAATCACCTTACTGCAGAATTTGCCTATTTCAAATAGTAATGGATCT
8286433 GCGTAAAA
1 G-GTAAAA
8286441 TTATGGACAA
Statistics
Matches: 63, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
56 57 0.90
57 6 0.10
ACGTcount: A:0.38, C:0.16, G:0.15, T:0.31
Consensus pattern (56 bp):
GGTAAAAAATAATCACCTTACTGCAGAATTTGCCTATTTCAAATAGTAATGGATCT
Found at i:8290743 original size:9 final size:9
Alignment explanation
Indices: 8290729--8290755 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
8290719 TCTATGAGGT
8290729 GAAGAAGAG
1 GAAGAAGAG
8290738 GAAGAAGAG
1 GAAGAAGAG
8290747 GAAGAAGAG
1 GAAGAAGAG
8290756 AATGAGCCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.44, T:0.00
Consensus pattern (9 bp):
GAAGAAGAG
Found at i:8316815 original size:139 final size:138
Alignment explanation
Indices: 8316566--8316833 Score: 356
Period size: 139 Copynumber: 1.9 Consensus size: 138
8316556 TGAGGTAAAT
* * * *
8316566 TTTGGCTAACTTTATTTTATGGGTAAAATACCCTCACTTCCTAAACTTTTAGCCATAATTTTACA
1 TTTGGCTAACTTTATTTTATGAGAAAAATACCCTCACCTCCTAAACTTTTAGCCATAATTTCACA
*** * ***
8316631 TGGGTCTATTAGTTTTCAAAATAGATAGTTTGCCTAAAAAGAATATCCTTCACTGGACACATAAA
66 CAAGTCTATTAGTTTTCAAAATAGACAGTCCACCTAAAAAGAATATCCTTCACTGGACACATAAA
8316696 TCCAGCCG
131 TCCAGCCG
* *
8316704 TTTGGCTAACTTTATTTTATGAGAAAAATACCCTCACCCTCTTTAACTTTTAGCCATAATTTCAC
1 TTTGGCTAACTTTATTTTATGAGAAAAATACCCTCA-CCTCCTAAACTTTTAGCCATAATTTCAC
* * * * **
8316769 GCAAGTCTATTAGTTTTCAAAATAGACAGTCCATCTCAAAAGAATATCTTTCGTTGGACACATAA
65 ACAAGTCTATTAGTTTTCAAAATAGACAGTCCACCTAAAAAGAATATCCTTCACTGGACACATAA
8316834 TTCAACTCTT
Statistics
Matches: 110, Mismatches: 19, Indels: 1
0.85 0.15 0.01
Matches are distributed among these distances:
138 34 0.31
139 76 0.69
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.35
Consensus pattern (138 bp):
TTTGGCTAACTTTATTTTATGAGAAAAATACCCTCACCTCCTAAACTTTTAGCCATAATTTCACA
CAAGTCTATTAGTTTTCAAAATAGACAGTCCACCTAAAAAGAATATCCTTCACTGGACACATAAA
TCCAGCCG
Found at i:8318615 original size:24 final size:24
Alignment explanation
Indices: 8318581--8318626 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
8318571 TTTTGTTCAG
* *
8318581 TAAATTCGTTTGTCACTTTGTCGA
1 TAAATTCGTTTGTAACGTTGTCGA
*
8318605 TAAATTTGTTTGTAACGTTGTC
1 TAAATTCGTTTGTAACGTTGTC
8318627 TTTATTCTGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.22, C:0.13, G:0.17, T:0.48
Consensus pattern (24 bp):
TAAATTCGTTTGTAACGTTGTCGA
Found at i:8319793 original size:1 final size:1
Alignment explanation
Indices: 8319787--8319811 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
8319777 CTTCTTTCCC
8319787 TTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTT
8319812 GGATTTGGGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:8322986 original size:10 final size:10
Alignment explanation
Indices: 8322971--8323000 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
8322961 GAAGATTCAA
8322971 GCATGAAGAG
1 GCATGAAGAG
8322981 GCATGAAGAG
1 GCATGAAGAG
*
8322991 GTATGAAGAG
1 GCATGAAGAG
8323001 TTCATATTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.40, C:0.07, G:0.40, T:0.13
Consensus pattern (10 bp):
GCATGAAGAG
Found at i:8329619 original size:15 final size:15
Alignment explanation
Indices: 8329601--8329634 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
8329591 ATTCATTTTG
8329601 TTTTTATTTTTATTA
1 TTTTTATTTTTATTA
8329616 TTTTTATTTTTATTA
1 TTTTTATTTTTATTA
8329631 TTTT
1 TTTT
8329635 CTTTCCCATC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (15 bp):
TTTTTATTTTTATTA
Found at i:8343107 original size:29 final size:31
Alignment explanation
Indices: 8343025--8343107 Score: 93
Period size: 30 Copynumber: 2.8 Consensus size: 31
8343015 CTTATTTGAC
* *
8343025 TCAAAATAAAAGTATTATGATTT-ATGTGAT
1 TCAAAATAAAAGTATAATGATTTAATGTGAA
*
8343055 TCAAAATAAAAGTGTAA-GAGTTTAAT-TGAA
1 TCAAAATAAAAGTATAATGA-TTTAATGTGAA
*
8343085 T-ATAATAAAAGTATAATGATTTA
1 TCAAAATAAAAGTATAATGATTTA
8343108 TTTAAATTTA
Statistics
Matches: 45, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
29 19 0.42
30 24 0.53
31 2 0.04
ACGTcount: A:0.48, C:0.02, G:0.13, T:0.36
Consensus pattern (31 bp):
TCAAAATAAAAGTATAATGATTTAATGTGAA
Found at i:8343299 original size:14 final size:15
Alignment explanation
Indices: 8343280--8343313 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
8343270 GAATAATATA
*
8343280 TAAAA-TTAATTTTT
1 TAAAATTTAATATTT
8343294 TAAAATTTAATATTT
1 TAAAATTTAATATTT
8343309 TAAAA
1 TAAAA
8343314 AATTTAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.28
15 13 0.72
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
TAAAATTTAATATTT
Found at i:8343315 original size:17 final size:17
Alignment explanation
Indices: 8343295--8343335 Score: 66
Period size: 17 Copynumber: 2.4 Consensus size: 17
8343285 TTAATTTTTT
8343295 AAAATTTAATATT-TTAA
1 AAAATTTAA-ATTATTAA
8343312 AAAATTTAAATTATTAA
1 AAAATTTAAATTATTAA
8343329 AAAATTT
1 AAAATTT
8343336 TTAAATAAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 3 0.13
17 20 0.87
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
AAAATTTAAATTATTAA
Found at i:8353616 original size:40 final size:39
Alignment explanation
Indices: 8353555--8353634 Score: 117
Period size: 40 Copynumber: 2.0 Consensus size: 39
8353545 TTTTTTTTTT
*
8353555 GGGGGGGGGGGGTAGGGGGAGAGAGAGGGAGGAGAGAGAGA
1 GGGGGGGGGGGG-AGGAGGAGAGAGAGGGA-GAGAGAGAGA
8353596 NGGGGGGGGGGGG-GGAGGAGAGAGAGGGAGAGAGAGAGA
1 -GGGGGGGGGGGGAGGAGGAGAGAGAGGGAGAGAGAGAGA
8353635 ATAATAAACA
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
39 10 0.27
40 15 0.41
42 12 0.32
ACGTcount: A:0.28, C:0.00, G:0.70, T:0.01
Consensus pattern (39 bp):
GGGGGGGGGGGGAGGAGGAGAGAGAGGGAGAGAGAGAGA
Found at i:8372092 original size:2 final size:2
Alignment explanation
Indices: 8372085--8372115 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
8372075 AAAATAATTT
8372085 TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8372116 CTTTAATTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:8375313 original size:3 final size:3
Alignment explanation
Indices: 8375300--8375330 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
8375290 AACAAAACAA
8375300 AAT AA- AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
8375331 ATAAATAATC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.07
3 25 0.93
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:8379512 original size:2 final size:2
Alignment explanation
Indices: 8379505--8379562 Score: 79
Period size: 2 Copynumber: 31.0 Consensus size: 2
8379495 TCTTGAATAA
8379505 AT AT AT AT AT AT AT -T AT AT AT A- AT AT -T AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
8379544 AT AT A- AT AT AA AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT
8379563 TTATTTATTT
Statistics
Matches: 50, Mismatches: 2, Indels: 8
0.83 0.03 0.13
Matches are distributed among these distances:
1 4 0.08
2 46 0.92
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8379543 original size:27 final size:26
Alignment explanation
Indices: 8379505--8379571 Score: 84
Period size: 27 Copynumber: 2.6 Consensus size: 26
8379495 TCTTGAATAA
8379505 ATATATATATATATTAT-ATAT-AAT
1 ATATATATATATATTATAATATAAAT
8379529 ATTATATATATATATATATAATATAAAT
1 A-TATATATATATAT-TATAATATAAAT
* *
8379557 ATATATTTATTTATT
1 ATATATATATATATT
8379572 TACTGAATGC
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
24 1 0.03
25 13 0.35
26 4 0.11
27 15 0.41
28 4 0.11
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (26 bp):
ATATATATATATATTATAATATAAAT
Found at i:8381201 original size:12 final size:12
Alignment explanation
Indices: 8381153--8381209 Score: 61
Period size: 11 Copynumber: 5.2 Consensus size: 12
8381143 TCATAACATA
8381153 TAAA-AATTTTT
1 TAAATAATTTTT
8381164 TAAAT--TTTTT
1 TAAATAATTTTT
* *
8381174 TTAA-AATTTAT
1 TAAATAATTTTT
8381185 T-AATAATTTTT
1 TAAATAATTTTT
8381196 TAAATAATTTTT
1 TAAATAATTTTT
8381208 TA
1 TA
8381210 TTAATATTAA
Statistics
Matches: 38, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
10 10 0.26
11 16 0.42
12 12 0.32
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (12 bp):
TAAATAATTTTT
Found at i:8381293 original size:24 final size:23
Alignment explanation
Indices: 8381264--8381317 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 23
8381254 TTACTCAATT
*
8381264 TTATTTTTTTTTCA-ATTTATATTA
1 TTATTTTTATTT-ATATTTAT-TTA
8381288 TTATTTTTATTTATATTTATTTA
1 TTATTTTTATTTATATTTATTTA
8381311 TT-TTTTT
1 TTATTTTT
8381318 CGTTTCTATT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
22 5 0.18
23 6 0.21
24 17 0.61
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (23 bp):
TTATTTTTATTTATATTTATTTA
Found at i:8381299 original size:18 final size:20
Alignment explanation
Indices: 8381263--8381315 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 20
8381253 CTTACTCAAT
*
8381263 TTTATTTTTTTTTCAATTTATA
1 TTTATTTATTTTT--ATTTATA
8381285 -TTA-TTATTTTTATTTATA
1 TTTATTTATTTTTATTTATA
8381303 TTTATTTATTTTT
1 TTTATTTATTTTT
8381316 TTCGTTTCTA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
18 7 0.25
19 3 0.11
20 15 0.54
21 3 0.11
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.75
Consensus pattern (20 bp):
TTTATTTATTTTTATTTATA
Found at i:8381784 original size:12 final size:12
Alignment explanation
Indices: 8381767--8381791 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8381757 TTACAAATTA
8381767 TAGTTTTATATT
1 TAGTTTTATATT
8381779 TAGTTTTATATT
1 TAGTTTTATATT
8381791 T
1 T
8381792 CTATTATCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.00, G:0.08, T:0.68
Consensus pattern (12 bp):
TAGTTTTATATT
Found at i:8388599 original size:61 final size:61
Alignment explanation
Indices: 8388500--8388627 Score: 222
Period size: 61 Copynumber: 2.1 Consensus size: 61
8388490 CACTATTTTA
* *
8388500 AATT-TATTATTCATACCCATCCTCAGTTTGAGAATTTCAAATGATCAATATTTAACTGAT
1 AATTATATTATTCATACCCATCCTCAGTTTAAAAATTTCAAATGATCAATATTTAACTGAT
*
8388560 AATTATATTATTCATACTCATCCTCAGTTTAAAAATTTCAAATGATCAATATTTAACTGAT
1 AATTATATTATTCATACCCATCCTCAGTTTAAAAATTTCAAATGATCAATATTTAACTGAT
8388621 AATTATA
1 AATTATA
8388628 AAATGATTTT
Statistics
Matches: 64, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
60 4 0.06
61 60 0.94
ACGTcount: A:0.38, C:0.15, G:0.06, T:0.41
Consensus pattern (61 bp):
AATTATATTATTCATACCCATCCTCAGTTTAAAAATTTCAAATGATCAATATTTAACTGAT
Found at i:8394122 original size:33 final size:33
Alignment explanation
Indices: 8394078--8394142 Score: 121
Period size: 33 Copynumber: 2.0 Consensus size: 33
8394068 AAAAGAGTAC
8394078 ATAATTATTTTCAAGAATACGCTTTTGAAATAT
1 ATAATTATTTTCAAGAATACGCTTTTGAAATAT
*
8394111 ATAATTCTTTTCAAGAATACGCTTTTGAAATA
1 ATAATTATTTTCAAGAATACGCTTTTGAAATA
8394143 CTATCTCATT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.38, C:0.11, G:0.09, T:0.42
Consensus pattern (33 bp):
ATAATTATTTTCAAGAATACGCTTTTGAAATAT
Found at i:8429487 original size:19 final size:20
Alignment explanation
Indices: 8429450--8429487 Score: 53
Period size: 18 Copynumber: 2.0 Consensus size: 20
8429440 TAGATTTTGA
*
8429450 TATTTTGTTATTGGGTTTTT
1 TATTTTGTTATTAGGTTTTT
8429470 TATTTT-TTATTA-GTTTTT
1 TATTTTGTTATTAGGTTTTT
8429488 GTAGAGAGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 6 0.35
19 5 0.29
20 6 0.35
ACGTcount: A:0.13, C:0.00, G:0.13, T:0.74
Consensus pattern (20 bp):
TATTTTGTTATTAGGTTTTT
Found at i:8435331 original size:2 final size:2
Alignment explanation
Indices: 8435324--8435364 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
8435314 TCTTTTAATA
8435324 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8435365 TAAACTAAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 37 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Done.