Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38630433
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 2298367 characters in sequence are not A, C, G, or T
File 18 of 97
Found at i:8444685 original size:13 final size:13
Alignment explanation
Indices: 8444667--8444691 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8444657 TTTCAGAAAA
8444667 TTTATAAAATCAT
1 TTTATAAAATCAT
8444680 TTTATAAAATCA
1 TTTATAAAATCA
8444692 CAATTTCTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTTATAAAATCAT
Found at i:8446533 original size:19 final size:19
Alignment explanation
Indices: 8446509--8446554 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 19
8446499 TTAATATTTT
8446509 AATATTATTTTATT-TATAA
1 AATATTATTTTATTCTA-AA
8446528 AATATTATTTTATTCTAAA
1 AATATTATTTTATTCTAAA
*
8446547 AATTTTAT
1 AATATTAT
8446555 CTTGTCTCCT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 23 0.92
20 2 0.08
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (19 bp):
AATATTATTTTATTCTAAA
Found at i:8446952 original size:39 final size:39
Alignment explanation
Indices: 8446897--8446971 Score: 114
Period size: 39 Copynumber: 1.9 Consensus size: 39
8446887 AGATAACAAG
* * *
8446897 TCTTGTAGCTAGTGTAAATATTTGAATCTCCTTTATCTA
1 TCTTGTAGCTAATGTAAAGATTTAAATCTCCTTTATCTA
*
8446936 TCTTGTAGCTAATGTAAAGATTTAAATTTCCTTTAT
1 TCTTGTAGCTAATGTAAAGATTTAAATCTCCTTTAT
8446972 TTTTTCTTTA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 32 1.00
ACGTcount: A:0.28, C:0.13, G:0.12, T:0.47
Consensus pattern (39 bp):
TCTTGTAGCTAATGTAAAGATTTAAATCTCCTTTATCTA
Found at i:8447783 original size:30 final size:30
Alignment explanation
Indices: 8447744--8447811 Score: 102
Period size: 30 Copynumber: 2.3 Consensus size: 30
8447734 GGAATTTTTA
*
8447744 GTTGAAAAAGCATTTCCCACA-AAGAATTTC
1 GTTGGAAAAGCATTTCCCACAGAA-AATTTC
*
8447774 GTTGGAAAAGCATTTCCCATAGAAAATTTC
1 GTTGGAAAAGCATTTCCCACAGAAAATTTC
8447804 GTTGGAAA
1 GTTGGAAA
8447812 TTTCCAACGA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
30 33 0.94
31 2 0.06
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.28
Consensus pattern (30 bp):
GTTGGAAAAGCATTTCCCACAGAAAATTTC
Found at i:8449087 original size:12 final size:12
Alignment explanation
Indices: 8449070--8449100 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
8449060 TAAGATCTAA
8449070 CATTCAAAACTG
1 CATTCAAAACTG
8449082 CATTCAAAACTG
1 CATTCAAAACTG
8449094 CATTCAA
1 CATTCAA
8449101 GTTAAAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.42, C:0.26, G:0.06, T:0.26
Consensus pattern (12 bp):
CATTCAAAACTG
Found at i:8450530 original size:13 final size:14
Alignment explanation
Indices: 8450511--8450557 Score: 69
Period size: 14 Copynumber: 3.4 Consensus size: 14
8450501 CCAAATAATC
8450511 AAAATTAATTAACT
1 AAAATTAATTAACT
8450525 -AAATTAATTAACT
1 AAAATTAATTAACT
* *
8450538 AAAACTAATTAACC
1 AAAATTAATTAACT
8450552 AAAATT
1 AAAATT
8450558 TAAACTAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
13 13 0.45
14 16 0.55
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (14 bp):
AAAATTAATTAACT
Found at i:8452603 original size:51 final size:51
Alignment explanation
Indices: 8452467--8452603 Score: 143
Period size: 51 Copynumber: 2.7 Consensus size: 51
8452457 TATTCCTTAC
* * * *
8452467 CAGAAAGAAAAACGTTTAAACATTTTGAGTATTTTGGAATAGTTTTTGATA
1 CAGAAAGAAAAACCTTTGAACATTTTGAGAATTTTAGAATAGTTTTTGATA
* * *
8452518 CAGAAAG-AAAACCTTTGAGCATTTTTAAGAATTTTAGAGT-GATTTTTGATA
1 CAGAAAGAAAAACCTTTGAACA-TTTTGAGAATTTTAGAATAG-TTTTTGATA
* * * *
8452569 TATAAAGAAAAACCTTTGAACATTTGGAGCATTTT
1 CAGAAAGAAAAACCTTTGAACATTTTGAGAATTTT
8452604 TTGTCAAATA
Statistics
Matches: 70, Mismatches: 13, Indels: 6
0.79 0.15 0.07
Matches are distributed among these distances:
50 12 0.17
51 45 0.64
52 13 0.19
ACGTcount: A:0.39, C:0.08, G:0.17, T:0.36
Consensus pattern (51 bp):
CAGAAAGAAAAACCTTTGAACATTTTGAGAATTTTAGAATAGTTTTTGATA
Found at i:8452731 original size:22 final size:22
Alignment explanation
Indices: 8452703--8452745 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
8452693 AGTTTTGGTG
*
8452703 GTTTTTAGGCATTACGTGACTA
1 GTTTTTAGGCAATACGTGACTA
*
8452725 GTTTTTAGGCAATGCGTGACT
1 GTTTTTAGGCAATACGTGACT
8452746 GACTTTGGAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.21, C:0.14, G:0.26, T:0.40
Consensus pattern (22 bp):
GTTTTTAGGCAATACGTGACTA
Found at i:8452763 original size:21 final size:21
Alignment explanation
Indices: 8452732--8452808 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
8452722 CTAGTTTTTA
*
8452732 GGCAATGCGTGACTGACTTTG
1 GGCATTGCGTGACTGACTTTG
* **
8452753 GACATTGCGTGGTTGACTTTG
1 GGCATTGCGTGACTGACTTTG
**
8452774 GGCATTGCGTGGTTGACTTTG
1 GGCATTGCGTGACTGACTTTG
8452795 GGCATTGCGTGACT
1 GGCATTGCGTGACT
8452809 AGTTTTTGTA
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 49 1.00
ACGTcount: A:0.14, C:0.17, G:0.35, T:0.34
Consensus pattern (21 bp):
GGCATTGCGTGACTGACTTTG
Found at i:8452877 original size:23 final size:23
Alignment explanation
Indices: 8452798--8452925 Score: 152
Period size: 23 Copynumber: 5.5 Consensus size: 23
8452788 GACTTTGGGC
* *
8452798 ATTGCGTGACTAGTTTTTGTAAGGT
1 ATTGCGTGACT--TGTTAGTAAGGT
*
8452823 ATTGCGTGACTAGTT-GATAA-GT
1 ATTGCGTGACTTGTTAG-TAAGGT
*
8452845 ATTGCATGACTTGTTAGTAAGGT
1 ATTGCGTGACTTGTTAGTAAGGT
*
8452868 ATTGTGTGACTTGTTAGTAAGGT
1 ATTGCGTGACTTGTTAGTAAGGT
* *
8452891 ATTGCGTGACTAGTTAGTAAGGC
1 ATTGCGTGACTTGTTAGTAAGGT
8452914 ATTGCGTGACTT
1 ATTGCGTGACTT
8452926 AGGCATTACT
Statistics
Matches: 90, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
22 19 0.21
23 60 0.67
25 11 0.12
ACGTcount: A:0.23, C:0.09, G:0.28, T:0.39
Consensus pattern (23 bp):
ATTGCGTGACTTGTTAGTAAGGT
Found at i:8453599 original size:60 final size:60
Alignment explanation
Indices: 8453485--8453601 Score: 137
Period size: 60 Copynumber: 1.9 Consensus size: 60
8453475 CGTTTAAGCA
* * * * * *
8453485 TTTTGAGCATTTTGGAGTAGTTTTTGATACACGAAGAAAACCTATGAGCGTTTTGAGTAT
1 TTTTAAGCATTTTGGAGTAGTTTGTGATACACAAAGAAAAACTATGAACATTTTGAGTAT
* * *
8453545 TTTTAAGCATTTTGGAGTA-TTTGTGATATATAAAGAAAAACTTTGGAACATTTTGAG
1 TTTTAAGCATTTTGGAGTAGTTTGTGATACACAAAGAAAAACTAT-GAACATTTTGAG
8453602 CATTCATATT
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
59 19 0.40
60 28 0.60
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.39
Consensus pattern (60 bp):
TTTTAAGCATTTTGGAGTAGTTTGTGATACACAAAGAAAAACTATGAACATTTTGAGTAT
Found at i:8453732 original size:22 final size:22
Alignment explanation
Indices: 8453707--8454031 Score: 147
Period size: 22 Copynumber: 14.3 Consensus size: 22
8453697 TTGAGAATTA
8453707 CGTGACTAGTTTTTAGGCATTG
1 CGTGACTAGTTTTTAGGCATTG
** *
8453729 CGTGACT-GACTTT-GGATATTG
1 CGTGACTAGTTTTTAGG-CATTG
* ** *
8453750 CGTAACT-GACTTTGGGCATTG
1 CGTGACTAGTTTTTAGGCATTG
* **
8453771 CATGACTAGTTGATAGGCATTG
1 CGTGACTAGTTTTTAGGCATTG
* * ** *
8453793 TGTGATTA-ACTTTGGGCATTG
1 CGTGACTAGTTTTTAGGCATTG
* *
8453814 CATGACTAGTTTTTGATAAGACATTG
1 CGTGACTAG-TTTT--T-AGGCATTG
8453840 CGTGACTAGTTTCTGATAAGGCATTG
1 CGTGACTAGTTT-T--T-AGGCATTG
**
8453866 CGTGACTAGTTGATAGGCATTG
1 CGTGACTAGTTTTTAGGCATTG
** * *
8453888 CGTGACTA-ACTTTGGGCATTA
1 CGTGACTAGTTTTTAGGCATTG
8453909 CGTGACTAGTTTTTGATAAGGCATTG
1 CGTGACTAG-TTTT--T-AGGCATTG
** *
8453935 CGTGACTAGTTGATAGGCATTA
1 CGTGACTAGTTTTTAGGCATTG
* ** *
8453957 CGTGACTTGTTGATAGGCATTA
1 CGTGACTAGTTTTTAGGCATTG
* * *
8453979 CGTGACTTGTTAGTAAGGCATTG
1 CGTGACTAGTT-TTTAGGCATTG
* * *
8454002 CGTGACTTGTTAGTAAGGCATTG
1 CGTGACTAGTT-TTTAGGCATTG
*
8454025 TGTGACT
1 CGTGACT
8454032 TAGGCATTGC
Statistics
Matches: 239, Mismatches: 49, Indels: 29
0.75 0.15 0.09
Matches are distributed among these distances:
20 2 0.01
21 57 0.24
22 78 0.33
23 43 0.18
25 7 0.03
26 52 0.22
ACGTcount: A:0.23, C:0.14, G:0.27, T:0.36
Consensus pattern (22 bp):
CGTGACTAGTTTTTAGGCATTG
Found at i:8453770 original size:21 final size:21
Alignment explanation
Indices: 8453722--8453771 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
8453712 CTAGTTTTTA
*
8453722 GGCATTGCGTGACTGACTTTG
1 GGCATTGCGTAACTGACTTTG
**
8453743 GATATTGCGTAACTGACTTTG
1 GGCATTGCGTAACTGACTTTG
8453764 GGCATTGC
1 GGCATTGC
8453772 ATGACTAGTT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.18, C:0.18, G:0.30, T:0.34
Consensus pattern (21 bp):
GGCATTGCGTAACTGACTTTG
Found at i:8453813 original size:43 final size:43
Alignment explanation
Indices: 8453746--8453985 Score: 194
Period size: 43 Copynumber: 5.3 Consensus size: 43
8453736 GACTTTGGAT
* *
8453746 ATTGCGTAACTGACTTTGGGCATTGCATGACTAGTTGATAGGC
1 ATTGCGTGACTAACTTTGGGCATTGCATGACTAGTTGATAGGC
* * *
8453789 ATTGTGTGATTAACTTTGGGCATTGCATGACTAGTTTTTGATAAGAC
1 ATTGCGTGACTAACTTTGGGCATTGCATGACTAG---TTGAT-AGGC
** *
8453836 ATTGCGTGACTAGTTTCTGATAAGGCATTGCGTGACTAGTTGATAGGC
1 ATTGCGTGACTAACTT-TG----GGCATTGCATGACTAGTTGATAGGC
* *
8453884 ATTGCGTGACTAACTTTGGGCATTACGTGACTAGTTTTTGATAAGGC
1 ATTGCGTGACTAACTTTGGGCATTGCATGACTAG---TTGAT-AGGC
* * * * *
8453931 ATTGCGTGACT-AGTTGATAGGCATTACGTGACTTGTTGATAGGC
1 ATTGCGTGACTAACTT--TGGGCATTGCATGACTAGTTGATAGGC
*
8453975 ATTACGTGACT
1 ATTGCGTGACT
8453986 TGTTAGTAAG
Statistics
Matches: 164, Mismatches: 18, Indels: 29
0.78 0.09 0.14
Matches are distributed among these distances:
43 45 0.27
44 14 0.09
45 5 0.03
46 13 0.08
47 32 0.20
48 35 0.21
49 5 0.03
52 15 0.09
ACGTcount: A:0.24, C:0.14, G:0.27, T:0.35
Consensus pattern (43 bp):
ATTGCGTGACTAACTTTGGGCATTGCATGACTAGTTGATAGGC
Found at i:8453838 original size:26 final size:26
Alignment explanation
Indices: 8453809--8453945 Score: 121
Period size: 26 Copynumber: 5.6 Consensus size: 26
8453799 TAACTTTGGG
* *
8453809 CATTGCATGACTAGTTTTTGATAAGA
1 CATTGCGTGACTAGTTTCTGATAAGA
*
8453835 CATTGCGTGACTAGTTTCTGATAAGG
1 CATTGCGTGACTAGTTTCTGATAAGA
*
8453861 CATTGCGTGACTAG--T-TGAT-AGG
1 CATTGCGTGACTAGTTTCTGATAAGA
** *
8453883 CATTGCGTGACTAACTT-TG----GG
1 CATTGCGTGACTAGTTTCTGATAAGA
* * *
8453904 CATTACGTGACTAGTTTTTGATAAGG
1 CATTGCGTGACTAGTTTCTGATAAGA
8453930 CATTGCGTGACTAGTT
1 CATTGCGTGACTAGTT
8453946 GATAGGCATT
Statistics
Matches: 96, Mismatches: 8, Indels: 14
0.81 0.07 0.12
Matches are distributed among these distances:
21 16 0.17
22 18 0.19
23 4 0.04
24 4 0.04
26 54 0.56
ACGTcount: A:0.24, C:0.15, G:0.26, T:0.36
Consensus pattern (26 bp):
CATTGCGTGACTAGTTTCTGATAAGA
Found at i:8453913 original size:69 final size:68
Alignment explanation
Indices: 8453835--8454031 Score: 231
Period size: 69 Copynumber: 2.9 Consensus size: 68
8453825 TTTGATAAGA
*
8453835 CATTGCGTGACTAGTTTCTGATAAGGCATTGCGTGACTAGTTGATAGGCATTGCGTGACTAACTT
1 CATTACGTGACTAGTTT-TGATAAGGCATTGCGTGACTAGTTGATAGGCATTGCGTGACT-ACTT
*
8453900 -TGGG
64 ATAGG
* **
8453904 CATTACGTGACTAGTTTTTGATAAGGCATTGCGTGACTAGTTGATAGGCATTACGTGACTTGTTG
1 CATTACGTGACTAG-TTTTGATAAGGCATTGCGTGACTAGTTGATAGGCATTGCGTGACTACTT-
8453969 ATAGG
64 ATAGG
* * * *
8453974 CATTACGTGACTTG-TTAG-TAAGGCATTGCGTGACTTGTT-AGTAAGGCATTGTGTGACT
1 CATTACGTGACTAGTTTTGATAAGGCATTGCGTGACTAGTTGA-T-AGGCATTGCGTGACT
8454032 TAGGCATTGC
Statistics
Matches: 113, Mismatches: 10, Indels: 11
0.84 0.07 0.08
Matches are distributed among these distances:
66 1 0.01
67 21 0.19
68 18 0.16
69 54 0.48
70 19 0.17
ACGTcount: A:0.23, C:0.14, G:0.28, T:0.35
Consensus pattern (68 bp):
CATTACGTGACTAGTTTTGATAAGGCATTGCGTGACTAGTTGATAGGCATTGCGTGACTACTTAT
AGG
Found at i:8453927 original size:95 final size:91
Alignment explanation
Indices: 8453764--8453985 Score: 327
Period size: 95 Copynumber: 2.4 Consensus size: 91
8453754 ACTGACTTTG
* * * *
8453764 GGCATTGCATGACTAGTTGATAGGCATTGTGTGATTAACTTTGGGCATTGCATGACTAGTTTTTG
1 GGCATTGCGTGACTAGTTGATAGGCATTGCGTGACTAACTTTGGGCATTACATGACTAGTTTTTG
8453829 ATAAGACATTGCGTGACTAGTTTCTGATAA
66 ATAAGACATTGCGTGACTAG--T-TGAT-A
*
8453859 GGCATTGCGTGACTAGTTGATAGGCATTGCGTGACTAACTTTGGGCATTACGTGACTAGTTTTTG
1 GGCATTGCGTGACTAGTTGATAGGCATTGCGTGACTAACTTTGGGCATTACATGACTAGTTTTTG
*
8453924 ATAAGGCATTGCGTGACTAGTTGATA
66 ATAAGACATTGCGTGACTAGTTGATA
* * *
8453950 GGCATTACGTGACTTGTTGATAGGCATTACGTGACT
1 GGCATTGCGTGACTAGTTGATAGGCATTGCGTGACT
8453986 TGTTAGTAAG
Statistics
Matches: 118, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
91 34 0.29
92 4 0.03
93 1 0.01
95 79 0.67
ACGTcount: A:0.24, C:0.14, G:0.27, T:0.35
Consensus pattern (91 bp):
GGCATTGCGTGACTAGTTGATAGGCATTGCGTGACTAACTTTGGGCATTACATGACTAGTTTTTG
ATAAGACATTGCGTGACTAGTTGATA
Found at i:8454076 original size:22 final size:22
Alignment explanation
Indices: 8454043--8454121 Score: 90
Period size: 22 Copynumber: 3.6 Consensus size: 22
8454033 AGGCATTGCT
*
8454043 TAAAAA-TCAGTCACGTAATGTC
1 TAAAAACT-AGTCACGTAATGCC
8454065 TAAAAACTAGTCACGTAATGCC
1 TAAAAACTAGTCACGTAATGCC
* * * *
8454087 T-AAAACCAATCACATAATACC
1 TAAAAACTAGTCACGTAATGCC
8454108 TAAAAACTAGTCAC
1 TAAAAACTAGTCAC
8454122 ACAGTGATTA
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
21 17 0.35
22 30 0.62
23 1 0.02
ACGTcount: A:0.46, C:0.23, G:0.09, T:0.23
Consensus pattern (22 bp):
TAAAAACTAGTCACGTAATGCC
Found at i:8454099 original size:21 final size:21
Alignment explanation
Indices: 8454053--8454112 Score: 66
Period size: 21 Copynumber: 2.8 Consensus size: 21
8454043 TAAAAATCAG
* * *
8454053 TCACGTAATGTCTAAAAACTAG
1 TCACGTAATGCCT-AAAACCAA
8454075 TCACGTAATGCCTAAAACCAA
1 TCACGTAATGCCTAAAACCAA
* *
8454096 TCACATAATACCTAAAA
1 TCACGTAATGCCTAAAA
8454113 ACTAGTCACA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
21 21 0.64
22 12 0.36
ACGTcount: A:0.45, C:0.23, G:0.08, T:0.23
Consensus pattern (21 bp):
TCACGTAATGCCTAAAACCAA
Found at i:8454122 original size:22 final size:22
Alignment explanation
Indices: 8454064--8454122 Score: 75
Period size: 21 Copynumber: 2.7 Consensus size: 22
8454054 CACGTAATGT
* *
8454064 CTAAAAACTAGTCACGTAATGC
1 CTAAAAACTAGTCACATAATAC
* *
8454086 CT-AAAACCAATCACATAATAC
1 CTAAAAACTAGTCACATAATAC
8454107 CTAAAAACTAGTCACA
1 CTAAAAACTAGTCACA
8454123 CAGTGATTAA
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
21 17 0.57
22 13 0.43
ACGTcount: A:0.47, C:0.25, G:0.07, T:0.20
Consensus pattern (22 bp):
CTAAAAACTAGTCACATAATAC
Found at i:8454549 original size:22 final size:22
Alignment explanation
Indices: 8454521--8454576 Score: 112
Period size: 22 Copynumber: 2.5 Consensus size: 22
8454511 TTTCTCCCTG
8454521 AGCAAAATCGTTGCCTGCAAAT
1 AGCAAAATCGTTGCCTGCAAAT
8454543 AGCAAAATCGTTGCCTGCAAAT
1 AGCAAAATCGTTGCCTGCAAAT
8454565 AGCAAAATCGTT
1 AGCAAAATCGTT
8454577 ATTCATCACC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.23
Consensus pattern (22 bp):
AGCAAAATCGTTGCCTGCAAAT
Found at i:8458893 original size:2 final size:2
Alignment explanation
Indices: 8458886--8458983 Score: 89
Period size: 2 Copynumber: 49.0 Consensus size: 2
8458876 AAGCAGAATC
8458886 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AGT A- AT -T
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT
* * *
8458926 AT GAGT GT GT AGT AT AT AT A- AT -T AGN AT AT AT AT AT AT AT AT
1 AT -A-T AT AT A-T AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT
8458968 AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT
8458984 TGGTAAAATT
Statistics
Matches: 82, Mismatches: 4, Indels: 20
0.77 0.04 0.19
Matches are distributed among these distances:
1 5 0.06
2 70 0.85
3 6 0.07
4 1 0.01
ACGTcount: A:0.45, C:0.00, G:0.07, T:0.47
Consensus pattern (2 bp):
AT
Found at i:8458999 original size:68 final size:65
Alignment explanation
Indices: 8458886--8459014 Score: 213
Period size: 66 Copynumber: 1.9 Consensus size: 65
8458876 AAGCAGAATC
8458886 ATATATATATATATATATATATATATATATATTAGTAATTATGAGTGTGTAGTATATATAATTAG
1 ATATATATATATATATATATATATATATATATTAGTAATTATGAGTGTGTAGTATATATAATTAG
* *
8458951 NATATATATATATATATATATATATATATATATTGGTAAAATTCTGAGTGTGTAGTATATATAA
1 -ATATATATATATATATATATATATATATATATTAGT--AATTATGAGTGTGTAGTATATATAA
8459015 ATTTAGAGTC
Statistics
Matches: 59, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
66 35 0.59
68 24 0.41
ACGTcount: A:0.43, C:0.01, G:0.11, T:0.45
Consensus pattern (65 bp):
ATATATATATATATATATATATATATATATATTAGTAATTATGAGTGTGTAGTATATATAATTAG
Found at i:8460735 original size:90 final size:90
Alignment explanation
Indices: 8460571--8460744 Score: 203
Period size: 90 Copynumber: 1.9 Consensus size: 90
8460561 AAGTTTCGAA
* **
8460571 ATTATTTTGTTTATATCATCTTCAAGCTTCAAAAGGATTTTAATGATTCGGTTTTGATTTATAGT
1 ATTATTTTGTTTATATCATCTTCAAGCTTCAAAAGGATTTCAATGATTCGGTTTCAATTTATAGT
* * *
8460636 TTTAGCAAATCATGTAAGTATTGCT
66 TATAACAAATCAAGTAAGTATTGCT
* *
8460661 ATTATTTTGTTT-TCATCATC-TCTAAGCTTTAAAAGGATTTCAAT-AGTT-GGTCTTCAATTTT
1 ATTATTTTGTTTAT-ATCATCTTC-AAGCTTCAAAAGGATTTCAATGA-TTCGGT-TTCAATTTA
*
8460722 TGGTTATAACAAATCAAGTAAGT
62 TAGTTATAACAAATCAAGTAAGT
8460745 GACTTGATAT
Statistics
Matches: 71, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
89 7 0.10
90 64 0.90
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.45
Consensus pattern (90 bp):
ATTATTTTGTTTATATCATCTTCAAGCTTCAAAAGGATTTCAATGATTCGGTTTCAATTTATAGT
TATAACAAATCAAGTAAGTATTGCT
Found at i:8461140 original size:26 final size:26
Alignment explanation
Indices: 8461104--8461204 Score: 96
Period size: 26 Copynumber: 3.9 Consensus size: 26
8461094 AATTCTAAAA
*
8461104 ATAATTTTACCATCAGAAGTGGATGG
1 ATAATTTTACCATCAAAAGTGGATGG
* ** *
8461130 ATAATTTTACCATCATAA-TCTAAGG
1 ATAATTTTACCATCAAAAGTGGATGG
* * * * *
8461155 ATAACTTTGCCACCAAAAATGGATGA
1 ATAATTTTACCATCAAAAGTGGATGG
*
8461181 ATAATTTTACCATTAAAAGTGGAT
1 ATAATTTTACCATCAAAAGTGGAT
8461205 TGATGTCGTA
Statistics
Matches: 57, Mismatches: 17, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
25 18 0.32
26 39 0.68
ACGTcount: A:0.40, C:0.14, G:0.15, T:0.32
Consensus pattern (26 bp):
ATAATTTTACCATCAAAAGTGGATGG
Found at i:8461582 original size:60 final size:60
Alignment explanation
Indices: 8461494--8461630 Score: 184
Period size: 60 Copynumber: 2.3 Consensus size: 60
8461484 CCTAAAAGAT
* * * * * * *
8461494 GAATTGATTATATGATTGGTAACGGAAATATCCATTGTTGATTTTCTTGTCCTGAAAAAG
1 GAATTGATCATTTAATTGATAACGGAAATATCCATTATTGATTTTCTTATCCTGAAAAAA
* *
8461554 GAATTGATCATTTAATTGATAATGGAAATATCCATTATTGATTTTCTTATCTTGAAAAAA
1 GAATTGATCATTTAATTGATAACGGAAATATCCATTATTGATTTTCTTATCCTGAAAAAA
*
8461614 GAATTGATCATTCAATT
1 GAATTGATCATTTAATT
8461631 AGTATATTTT
Statistics
Matches: 67, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
60 67 1.00
ACGTcount: A:0.35, C:0.09, G:0.15, T:0.40
Consensus pattern (60 bp):
GAATTGATCATTTAATTGATAACGGAAATATCCATTATTGATTTTCTTATCCTGAAAAAA
Found at i:8465702 original size:19 final size:19
Alignment explanation
Indices: 8465674--8465710 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
8465664 ATCTTTTTAC
8465674 TCCCTCTAAATACTTTCTT
1 TCCCTCTAAATACTTTCTT
*
8465693 TCCCTTTAAATACTTTCT
1 TCCCTCTAAATACTTTCT
8465711 CTTATATTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.22, C:0.30, G:0.00, T:0.49
Consensus pattern (19 bp):
TCCCTCTAAATACTTTCTT
Found at i:8468789 original size:379 final size:378
Alignment explanation
Indices: 8468062--8468820 Score: 1313
Period size: 379 Copynumber: 2.0 Consensus size: 378
8468052 TCAATAAAGG
* * *
8468062 TCATGCTGATTCTGGTGATAAATCATCCTTTTCCCTAAACAAAGGTATTCAGAACCAGTAACTCA
1 TCATGCTGATTCTAGTGATAAACCACCCTTTTCCCTAAACAAAGGTATTCAGAACCAGTAACTCA
* * * *
8468127 AATTTTCAATTGTCAATTCTTCAATGGCAGGTATAATTGCTAACCTTTTTTGCTTTAATTCTGCT
66 AATCTTCAATTGTCAATTCTTCAATAGCAGGTATAATTGCTAACCTTTTTTACTTTAATTATGCT
* *
8468192 CATGGTTATTATGATGGATCATCTGTTAATATTTTTAGATATTTTTCTAATCATTGAATTGTTGA
131 CATGGTTATTATGATGGATCATCTGCTAATATTTTTAGATATTTTTCTAATAATTGAATTGTTGA
*
8468257 TTTGGGTGCTACTGATCATATAAAATGTAGTCTTCAATTTTTTAGTTCACAAATTGTTATTTCCA
196 TTTGGGTGCTACTGATCATATAAAATGTAGTCTTCAATTTTTGAGTTCACAAATTGTTATTTCCA
*
8468322 ATGGATTTGTTGAAATGCCTAACAATTGCAAGGCTTTAGTTACTCACATAGGAACTGTTCAATTG
261 ATGGATTTGTTGAAATGCCTAACAATTGCAAGGCTTTAGTTACTCACATAGGAACTGTTCAACTG
* *
8468387 TTGGATAATCTTACCTTACACAATGTCTTGTTTGTTCCTAGTTTTAGGTTCAA
326 TTGGATAATCTTACCTTACACAATGTCTTATTTGTTCCTAGCTTTAGGTTCAA
*
8468440 TCATGCTGATTCTAGTGATAAACCACCCTTTTTCCCTAAACAAAGGTATTCAGAACTAGTAACTC
1 TCATGCTGATTCTAGTGATAAACCACCC-TTTTCCCTAAACAAAGGTATTCAGAACCAGTAACTC
*
8468505 AAATCTTCAATTGTCAATTCTTCAATAGTAGGTATAATTGCTAACCTTTTTTACTTTAATTATGC
65 AAATCTTCAATTGTCAATTCTTCAATAGCAGGTATAATTGCTAACCTTTTTTACTTTAATTATGC
*
8468570 TCATGGTTATTATGATGGATCATCTGCTAATATTTTTGGATATTTTTCTAATAATT-AGATTGTT
130 TCATGGTTATTATGATGGATCATCTGCTAATATTTTTAGATATTTTTCTAATAATTGA-ATTGTT
* * *
8468634 GATTTGGGTGCTGCTGATCATATAGAATGTAGTCTTCAATTTTTGAGTTCACAAATTGTTGTTTC
194 GATTTGGGTGCTACTGATCATATAAAATGTAGTCTTCAATTTTTGAGTTCACAAATTGTTATTTC
*
8468699 TAATGGATTTGTTGAAATGCCTAACAATTGCAAGGCTTTAGTTACTCACATAGGAACTGTTCAAC
259 CAATGGATTTGTTGAAATGCCTAACAATTGCAAGGCTTTAGTTACTCACATAGGAACTGTTCAAC
8468764 TGTTGGATAATCTTACCTTACACAATGTCTTATTTGTTCCTAGCTTTAGGTTCAA
324 TGTTGGATAATCTTACCTTACACAATGTCTTATTTGTTCCTAGCTTTAGGTTCAA
8468819 TC
1 TC
8468821 TCATATGTAA
Statistics
Matches: 359, Mismatches: 20, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
378 26 0.07
379 333 0.93
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.41
Consensus pattern (378 bp):
TCATGCTGATTCTAGTGATAAACCACCCTTTTCCCTAAACAAAGGTATTCAGAACCAGTAACTCA
AATCTTCAATTGTCAATTCTTCAATAGCAGGTATAATTGCTAACCTTTTTTACTTTAATTATGCT
CATGGTTATTATGATGGATCATCTGCTAATATTTTTAGATATTTTTCTAATAATTGAATTGTTGA
TTTGGGTGCTACTGATCATATAAAATGTAGTCTTCAATTTTTGAGTTCACAAATTGTTATTTCCA
ATGGATTTGTTGAAATGCCTAACAATTGCAAGGCTTTAGTTACTCACATAGGAACTGTTCAACTG
TTGGATAATCTTACCTTACACAATGTCTTATTTGTTCCTAGCTTTAGGTTCAA
Found at i:8469882 original size:385 final size:386
Alignment explanation
Indices: 8469165--8469914 Score: 1119
Period size: 385 Copynumber: 1.9 Consensus size: 386
8469155 AAGAGCTTTC
* * *
8469165 ATTTGATTCATTGGTTAATACATAATCTTTTTTTGTCCTCAATGGAATATCAAAAAATTATCTTA
1 ATTTGATTCATTGGTTAATACATAATCATTCTTTGTCCTCAATGGAATATCAAAAAATTACCTTA
*
8469230 CCAAGAAAAACGTCTCCTCTCAAAGATGACTTGATAGCTTATCATACATAACTTCAAACAACCAA
66 CCAAGAAAAACGTCTCCTCTCAAAGATGACTTGATAGCTTATCATACACAACTTCAAACAACCAA
*
8469295 AATTCTCTACAAGCCTCTCTCACCCACTTGCACAAACTTAGCCATCCATGGGTTCCTCGCCCCAT
131 AATTCTCTACAAGCCTCTCTCACCCACTTGCACAAACTTAGCCATCCATGGGTTCCTCACCCCAT
* ** * * *
8469360 GTCTTTTTGAATCGATTGGTAACTCGATAATTAAAATCTAAAGCTGAGAATCAAAACCTATCTTG
196 GTCTTTTTAAATCGATCAGCAACTCGATAATTAAAACCTAAAGCTGAGAATCAAAACCCATCTTG
*
8469425 GTACTGCTTTTCTACTAGCTAGTAATATGATTTAGTGGTAGATTTCAGTTTGGTCGCTCCTTCAT
261 GTACTGCTTTTCTACTAGCTACTAATATGATTTAGTGGTAGATTTCAGTTTGGTCGCTCCTTCAT
8469490 AACTTTCCCAAGGGCTCTCTATATTGCAAGATTTCTTAAGTGCTCCAGGAGACACTCGAGT
326 AACTTTCCCAAGGGCTCTCTATATTGCAAGATTTCTTAAGTGCTCCAGGAGACACTCGAGT
* * * *
8469551 ATTTGATTCATTGGTTGATACATAATCATTCTTTGT-CTCCAATGGAATATCGAAAAGTTGCCTT
1 ATTTGATTCATTGGTTAATACATAATCATTCTTTGTCCT-CAATGGAATATCAAAAAATTACCTT
* * * * * *
8469615 ATCGAGGAAAACGTCTCCTCTCATATATGACTTGATAGCTTATCATACACCACTTCAAACAACCA
65 ACCAAGAAAAACGTCTCCTCTCAAAGATGACTTGATAGCTTATCATACACAACTTCAAACAACCA
* ** * *
8469680 AAATTTTC-ACAAGCCTCTCTCACCTGCTTGCACAACCTTAGCCATCCATGGGTTCCTCACTCCA
130 AAATTCTCTACAAGCCTCTCTCACCCACTTGCACAAACTTAGCCATCCATGGGTTCCTCACCCCA
* ** *
8469744 TGTTTTTTTAAATCGATCAGCAACTCGATAATTGGAACCTAAAGCTGAGAATCAAAACCCATTTT
195 TGTCTTTTTAAATCGATCAGCAACTCGATAATTAAAACCTAAAGCTGAGAATCAAAACCCATCTT
* * * *
8469809 GGTACTGCTTTTTTTCTAGCTACTAATATGATTTAGTGGTAGATTTCGGTTTGGTGGCTCCTTCA
260 GGTACTGCTTTTCTACTAGCTACTAATATGATTTAGTGGTAGATTTCAGTTTGGTCGCTCCTTCA
* * *
8469874 -ACACTTTCCCAAGGGCTTTCTATATTGCAGGGTTTCTTAAG
325 TA-ACTTTCCCAAGGGCTCTCTATATTGCAAGATTTCTTAAG
8469915 CACATGAGGA
Statistics
Matches: 324, Mismatches: 38, Indels: 5
0.88 0.10 0.01
Matches are distributed among these distances:
384 1 0.00
385 204 0.63
386 119 0.37
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.34
Consensus pattern (386 bp):
ATTTGATTCATTGGTTAATACATAATCATTCTTTGTCCTCAATGGAATATCAAAAAATTACCTTA
CCAAGAAAAACGTCTCCTCTCAAAGATGACTTGATAGCTTATCATACACAACTTCAAACAACCAA
AATTCTCTACAAGCCTCTCTCACCCACTTGCACAAACTTAGCCATCCATGGGTTCCTCACCCCAT
GTCTTTTTAAATCGATCAGCAACTCGATAATTAAAACCTAAAGCTGAGAATCAAAACCCATCTTG
GTACTGCTTTTCTACTAGCTACTAATATGATTTAGTGGTAGATTTCAGTTTGGTCGCTCCTTCAT
AACTTTCCCAAGGGCTCTCTATATTGCAAGATTTCTTAAGTGCTCCAGGAGACACTCGAGT
Found at i:8471275 original size:11 final size:10
Alignment explanation
Indices: 8471255--8471296 Score: 57
Period size: 10 Copynumber: 4.0 Consensus size: 10
8471245 TGAGAAAAGG
8471255 AAAAAGAAAA
1 AAAAAGAAAA
8471265 AAAAAGAAAA
1 AAAAAGAAAA
8471275 AAAAAGAAGAGA
1 AAAAAGAA-A-A
*
8471287 AAGAAGAAAA
1 AAAAAGAAAA
8471297 GAGGAAACAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
10 19 0.66
11 2 0.07
12 8 0.28
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (10 bp):
AAAAAGAAAA
Found at i:8480817 original size:6 final size:6
Alignment explanation
Indices: 8480806--8480844 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
8480796 AGTTACTATT
* *
8480806 CTGTTG CTGTTG CAGTTG CTGTTG CTGGTG CTGTTG CTG
1 CTGTTG CTGTTG CTGTTG CTGTTG CTGTTG CTGTTG CTG
8480845 CAACTGAGCC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.03, C:0.18, G:0.36, T:0.44
Consensus pattern (6 bp):
CTGTTG
Found at i:8482659 original size:12 final size:12
Alignment explanation
Indices: 8482642--8482672 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
8482632 CCATCCCTTC
8482642 GCTGCTGGGGCG
1 GCTGCTGGGGCG
8482654 GCTGCTGGGGCG
1 GCTGCTGGGGCG
8482666 GCTGCTG
1 GCTGCTG
8482673 CTGCTGCTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.00, C:0.26, G:0.55, T:0.19
Consensus pattern (12 bp):
GCTGCTGGGGCG
Found at i:8482672 original size:3 final size:3
Alignment explanation
Indices: 8482666--8482759 Score: 116
Period size: 3 Copynumber: 31.3 Consensus size: 3
8482656 TGCTGGGGCG
* * *
8482666 GCT GCT GCT GCT GCT GCT GCT GCT GTT GCT GTT GCT GTT GCT GCT GCT
1 GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT
* * * * *
8482714 GTT GTT GCT GCT GTT GCT GCT GCT GTT GCT GCT GCT GTT GCT GCT G
1 GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT G
8482760 AGCATGCCTC
Statistics
Matches: 77, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 77 1.00
ACGTcount: A:0.00, C:0.24, G:0.34, T:0.41
Consensus pattern (3 bp):
GCT
Found at i:8482681 original size:12 final size:12
Alignment explanation
Indices: 8482668--8482759 Score: 157
Period size: 12 Copynumber: 7.7 Consensus size: 12
8482658 CTGGGGCGGC
*
8482668 TGCTGCTGCTGC
1 TGCTGCTGCTGT
8482680 TGCTGCTGCTGT
1 TGCTGCTGCTGT
*
8482692 TGCTGTTGCTGT
1 TGCTGCTGCTGT
8482704 TGCTGCTGCTGT
1 TGCTGCTGCTGT
*
8482716 TGTTGCTGCTGT
1 TGCTGCTGCTGT
8482728 TGCTGCTGCTGT
1 TGCTGCTGCTGT
8482740 TGCTGCTGCTGT
1 TGCTGCTGCTGT
8482752 TGCTGCTG
1 TGCTGCTG
8482760 AGCATGCCTC
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 75 1.00
ACGTcount: A:0.00, C:0.24, G:0.34, T:0.42
Consensus pattern (12 bp):
TGCTGCTGCTGT
Found at i:8482806 original size:3 final size:3
Alignment explanation
Indices: 8482800--8482875 Score: 53
Period size: 3 Copynumber: 25.3 Consensus size: 3
8482790 CTGCAGTTGT
* * * * * * * * *
8482800 TGC TGC TGC TGC TGT TGC TGT TGA TGC TGA GGC TGT TGA GGT TGC TGC
1 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC
* *
8482848 TGC TGC TGC TGT TGC TGT TGC TGC TGC T
1 TGC TGC TGC TGC TGC TGC TGC TGC TGC T
8482876 CCCGCGCTTT
Statistics
Matches: 54, Mismatches: 19, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
3 54 1.00
ACGTcount: A:0.04, C:0.21, G:0.36, T:0.39
Consensus pattern (3 bp):
TGC
Found at i:8482815 original size:15 final size:15
Alignment explanation
Indices: 8482797--8482873 Score: 73
Period size: 15 Copynumber: 5.1 Consensus size: 15
8482787 CATCTGCAGT
*
8482797 TGTTGCTGCTGCTGC
1 TGTTGCTGTTGCTGC
*
8482812 TGTTGCTGTTGATGC
1 TGTTGCTGTTGCTGC
** ** *
8482827 TGAGGCTGTTGAGGT
1 TGTTGCTGTTGCTGC
* *
8482842 TGCTGCTGCTGCTGC
1 TGTTGCTGTTGCTGC
8482857 TGTTGCTGTTGCTGC
1 TGTTGCTGTTGCTGC
8482872 TG
1 TG
8482874 CTCCCGCGCT
Statistics
Matches: 48, Mismatches: 14, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
15 48 1.00
ACGTcount: A:0.04, C:0.19, G:0.36, T:0.40
Consensus pattern (15 bp):
TGTTGCTGTTGCTGC
Found at i:8485119 original size:4 final size:4
Alignment explanation
Indices: 8485110--8485138 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
8485100 ATATTAAAAT
8485110 TTTA TTTA TTTA TTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA T
8485139 AGATTAAGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:8488011 original size:2 final size:2
Alignment explanation
Indices: 8487998--8488049 Score: 79
Period size: 2 Copynumber: 26.0 Consensus size: 2
8487988 TAAAATGGTC
*
8487998 AT AT ACT AT AT AT AT GT AT AT AT AT AT AT A- AT AT AT AT AT AT
1 AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8488040 AT AT AT AT AT
1 AT AT AT AT AT
8488050 TATGCCACGG
Statistics
Matches: 46, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
1 1 0.02
2 43 0.93
3 2 0.04
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8488025 original size:23 final size:23
Alignment explanation
Indices: 8488005--8488049 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
8487995 GTCATATACT
*
8488005 ATATATATGTATATATATATATA
1 ATATATATATATATATATATATA
8488028 ATATATATATATATATATATAT
1 ATATATATATATATATATATAT
8488050 TATGCCACGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (23 bp):
ATATATATATATATATATATATA
Found at i:8488115 original size:2 final size:2
Alignment explanation
Indices: 8488108--8488155 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
8488098 TTATANGGTC
8488108 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8488150 AT AT AT
1 AT AT AT
8488156 TATGCCACGG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8488168 original size:106 final size:108
Alignment explanation
Indices: 8487994--8488208 Score: 391
Period size: 106 Copynumber: 2.0 Consensus size: 108
8487984 AGTGTAAAAT
8487994 GGTCATATACTATATATATGTATATATATATATAATATATATATATATATATATATTATGCCACG
1 GGTCATATACTATATATA-GTATATATATATATAATATATATATATATATATATATTATGCCACG
8488059 GGTTTAACAATAAATGACTTTAAACTCTATAAAGTTTGTTTATA
65 GGTTTAACAATAAATGACTTTAAACTCTATAAAGTTTGTTTATA
8488103 NGGTCATATA-TATATATA-TATATATATATAT-ATATATATATATATATATATATTATGCCACG
1 -GGTCATATACTATATATAGTATATATATATATAATATATATATATATATATATATTATGCCACG
8488165 GGTTTAACAATAAATGACTTTAAACTCTATAAAGTTTGTTTATA
65 GGTTTAACAATAAATGACTTTAAACTCTATAAAGTTTGTTTATA
8488209 AAATTCATTT
Statistics
Matches: 105, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
106 75 0.71
107 13 0.12
109 8 0.08
110 9 0.09
ACGTcount: A:0.40, C:0.08, G:0.09, T:0.42
Consensus pattern (108 bp):
GGTCATATACTATATATAGTATATATATATATAATATATATATATATATATATATTATGCCACGG
GTTTAACAATAAATGACTTTAAACTCTATAAAGTTTGTTTATA
Found at i:8501504 original size:6 final size:6
Alignment explanation
Indices: 8501493--8501520 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
8501483 AATTTATTTA
8501493 TTTAAC TTTAAC TTTAAC TTTAAC TTTA
1 TTTAAC TTTAAC TTTAAC TTTAAC TTTA
8501521 TGTATATCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.32, C:0.14, G:0.00, T:0.54
Consensus pattern (6 bp):
TTTAAC
Found at i:8501862 original size:25 final size:25
Alignment explanation
Indices: 8501834--8501882 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
8501824 GAGAGAAAGA
*
8501834 AGAGAGAGATTAATAGGGAGAGAGG
1 AGAGAGAGATCAATAGGGAGAGAGG
*
8501859 AGAGGGAGATCAATAGGGAGAGAG
1 AGAGAGAGATCAATAGGGAGAGAG
8501883 AGGATCTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.43, C:0.02, G:0.45, T:0.10
Consensus pattern (25 bp):
AGAGAGAGATCAATAGGGAGAGAGG
Found at i:8501882 original size:27 final size:26
Alignment explanation
Indices: 8501824--8501886 Score: 74
Period size: 25 Copynumber: 2.4 Consensus size: 26
8501814 TTTGTAGAAA
* * *
8501824 GAGAGAAAGAAGAGAGAGATTAATAG
1 GAGAGAGAGGAGAGAGAGATCAATAG
*
8501850 G-GAGAGAGGAGAGGGAGATCAATAGG
1 GAGAGAGAGGAGAGAGAGATCAATA-G
8501876 GAGAGAGAGGA
1 GAGAGAGAGGA
8501887 TCTTTTTGGG
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
25 19 0.61
26 3 0.10
27 9 0.29
ACGTcount: A:0.46, C:0.02, G:0.44, T:0.08
Consensus pattern (26 bp):
GAGAGAGAGGAGAGAGAGATCAATAG
Found at i:8502163 original size:4 final size:4
Alignment explanation
Indices: 8502154--8502178 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
8502144 TTTCATTTAG
8502154 AAAT AAAT AAAT AAAT AAAT AAAT A
1 AAAT AAAT AAAT AAAT AAAT AAAT A
8502179 TTATTTACGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:8503617 original size:7 final size:6
Alignment explanation
Indices: 8503582--8503649 Score: 52
Period size: 7 Copynumber: 10.7 Consensus size: 6
8503572 ATAATGTTAT
8503582 AATTAA AA-TAA AATATAA AATCTAAA AATTAGA AATTAA AA-TAA AA-TAA
1 AATTAA AATTAA AAT-TAA AAT-T-AA AATTA-A AATTAA AATTAA AATTAA
8503631 AATATAAGA AATTAA AATT
1 AAT-T-A-A AATTAA AATT
8503650 TATATAATAT
Statistics
Matches: 53, Mismatches: 1, Indels: 16
0.76 0.01 0.23
Matches are distributed among these distances:
5 15 0.28
6 11 0.21
7 16 0.30
8 7 0.13
9 4 0.08
ACGTcount: A:0.68, C:0.01, G:0.03, T:0.28
Consensus pattern (6 bp):
AATTAA
Found at i:8503643 original size:25 final size:25
Alignment explanation
Indices: 8503604--8503699 Score: 79
Period size: 25 Copynumber: 3.7 Consensus size: 25
8503594 ATATAAAATC
*
8503604 TAAAA-ATTAGAAATTAAAATAAAA
1 TAAAATATAAGAAATTAAAATAAAA
8503628 TAAAATATAAGAAATTAAAATTTATATAA
1 TAAAATATAAGAAATTAAAA--TA-A-AA
** *
8503657 TATAGGTAAAAGAAATTAAAATAAATA
1 TA-AAATATAAGAAATTAAAATAAA-A
*
8503684 TATAATATAA-AAATTA
1 TAAAATATAAGAAATTA
8503700 TATTAAAGAT
Statistics
Matches: 57, Mismatches: 8, Indels: 13
0.73 0.10 0.17
Matches are distributed among these distances:
24 5 0.09
25 19 0.33
26 5 0.09
27 6 0.11
28 3 0.05
29 4 0.07
30 15 0.26
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (25 bp):
TAAAATATAAGAAATTAAAATAAAA
Found at i:8503706 original size:25 final size:26
Alignment explanation
Indices: 8503669--8503721 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 26
8503659 TAGGTAAAAG
* *
8503669 AAATTAAAATAAATATAT-AATATAA
1 AAATTAAAATAAAGATATGAAAATAA
* *
8503694 AAATTATATTAAAGATATGAAAATAA
1 AAATTAAAATAAAGATATGAAAATAA
8503720 AA
1 AA
8503722 TATATAATAT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.66, C:0.00, G:0.04, T:0.30
Consensus pattern (26 bp):
AAATTAAAATAAAGATATGAAAATAA
Found at i:8505264 original size:36 final size:34
Alignment explanation
Indices: 8505192--8505277 Score: 102
Period size: 36 Copynumber: 2.4 Consensus size: 34
8505182 AAATTTGATG
8505192 AATATTAATATTTAATTTAAAATATTAAAAAATAAA
1 AATATTAATATTTAATTTAAAATATT-AAAAAT-AA
* **
8505228 AATATTAATATTTAACTTTAAAGTAATT-AATTTAA
1 AATATTAATATTTAA-TTTAAAAT-ATTAAAAATAA
8505263 AATATTAATATTTAA
1 AATATTAATATTTAA
8505278 ATTATACAAC
Statistics
Matches: 45, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
35 17 0.38
36 18 0.40
37 7 0.16
38 3 0.07
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.43
Consensus pattern (34 bp):
AATATTAATATTTAATTTAAAATATTAAAAATAA
Found at i:8507487 original size:4 final size:4
Alignment explanation
Indices: 8507480--8507505 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
8507470 TATATATATA
8507480 TATC TATC TATC TATC TATC TATC TA
1 TATC TATC TATC TATC TATC TATC TA
8507506 GGATTAGGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.27, C:0.23, G:0.00, T:0.50
Consensus pattern (4 bp):
TATC
Found at i:8507907 original size:2 final size:2
Alignment explanation
Indices: 8507900--8507924 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
8507890 GACCAACAAC
8507900 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
8507925 GTACAGATTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8509085 original size:23 final size:23
Alignment explanation
Indices: 8509059--8509103 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
8509049 GTTTATAGTT
*
8509059 TGTGAAATGGCATGGTGAGAATG
1 TGTGAAACGGCATGGTGAGAATG
* *
8509082 TGTGACACGTCATGGTGAGAAT
1 TGTGAAACGGCATGGTGAGAAT
8509104 ATGGGACACG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.29, C:0.09, G:0.36, T:0.27
Consensus pattern (23 bp):
TGTGAAACGGCATGGTGAGAATG
Found at i:8509111 original size:23 final size:23
Alignment explanation
Indices: 8509069--8509113 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
8509059 TGTGAAATGG
* *
8509069 CATGGTGAGAATGTGTGACACGT
1 CATGGTGAGAATATGGGACACGT
8509092 CATGGTGAGAATATGGGACACG
1 CATGGTGAGAATATGGGACACG
8509114 ACAAGGTTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.29, C:0.13, G:0.36, T:0.22
Consensus pattern (23 bp):
CATGGTGAGAATATGGGACACGT
Found at i:8509174 original size:23 final size:23
Alignment explanation
Indices: 8509148--8509527 Score: 128
Period size: 23 Copynumber: 16.5 Consensus size: 23
8509138 CCATGAAAGA
*
8509148 AATATGTGACACGGCAAGGTGAG
1 AATATGTGACACGGCATGGTGAG
* ** *
8509171 AATATGTGACACGAC-TCGCAGGG
1 AATATGTGACACGGCAT-GGTGAG
* * * *
8509194 AATATGTGATATGACATGGTAAG
1 AATATGTGACACGGCATGGTGAG
* * *
8509217 AATATATGACATGCCA-GTGTGAG
1 AATATGTGACACGGCATG-GTGAG
* *
8509240 -A-ATGTGGCACGCCATGGTGTA-
1 AATATGTGACACGGCATGGTG-AG
*
8509261 AATATGTGACACGCCATGGTGAG
1 AATATGTGACACGGCATGGTGAG
* *
8509284 AATATGTGAGAAGGCATGGTGAG
1 AATATGTGACACGGCATGGTGAG
* * *
8509307 CATATGTGACACGACA-GGATTCAG
1 AATATGTGACACGGCATGG--TGAG
* * * * *
8509331 AATTTATGACATGCCATGG-AAGG
1 AATATGTGACACGGCATGGTGA-G
* * * *
8509354 AATCTGTGACACGACAAGGTTCAG
1 AATATGTGACACGGCATGG-TGAG
* * * * * *
8509378 AGTTTGTGATACGCCATGGAGGG
1 AATATGTGACACGGCATGGTGAG
* * * *
8509401 AATCTATGACACGAG-AGGGTGAT
1 AATATGTGACACG-GCATGGTGAG
* * * *
8509424 AATGTGTGAGACGACATAGTGAG
1 AATATGTGACACGGCATGGTGAG
* * * *
8509447 AATATGTGACATGGGAGGGTTTAG
1 AATATGTGACACGGCATGG-TGAG
* * * *
8509471 AGTTTGTGACATGCCATGGTGAG
1 AATATGTGACACGGCATGGTGAG
* * *
8509494 AATATATGAAACGACATGGTGAG
1 AATATGTGACACGGCATGGTGAG
*
8509517 CATATGTGACA
1 AATATGTGACA
8509528 TGGCTGTGAC
Statistics
Matches: 254, Mismatches: 86, Indels: 34
0.68 0.23 0.09
Matches are distributed among these distances:
21 13 0.05
22 9 0.04
23 182 0.72
24 47 0.19
25 3 0.01
ACGTcount: A:0.32, C:0.13, G:0.31, T:0.24
Consensus pattern (23 bp):
AATATGTGACACGGCATGGTGAG
Found at i:8509362 original size:47 final size:47
Alignment explanation
Indices: 8509311--8509414 Score: 138
Period size: 47 Copynumber: 2.2 Consensus size: 47
8509301 GGTGAGCATA
*
8509311 TGTGACACGAC-AGGATTCAGAATTTATGACATGCCATGGAAGGAATC
1 TGTGACACGACAAGG-TTCAGAATTTATGACACGCCATGGAAGGAATC
* * * *
8509358 TGTGACACGACAAGGTTCAGAGTTTGTGATACGCCATGGAGGGAATC
1 TGTGACACGACAAGGTTCAGAATTTATGACACGCCATGGAAGGAATC
*
8509405 TATGACACGA
1 TGTGACACGA
8509415 GAGGGTGATA
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
47 47 0.94
48 3 0.06
ACGTcount: A:0.32, C:0.17, G:0.28, T:0.23
Consensus pattern (47 bp):
TGTGACACGACAAGGTTCAGAATTTATGACACGCCATGGAAGGAATC
Found at i:8509667 original size:81 final size:81
Alignment explanation
Indices: 8509579--8509743 Score: 188
Period size: 81 Copynumber: 2.0 Consensus size: 81
8509569 TGAGAGAATC
* * * * *
8509579 TGTGACACGGGAGGGTGATAATGTGTGAGACAACAAT-GCAAGAATATGTGACACGGTTGTGATA
1 TGTGACACGCGAAGGTGAGAATATGTGAGACAAC-ATGGCAAGAATATGTGACACGGTTGTGACA
8509643 CGACAAGGTTTAGAGTT
65 CGACAAGGTTTAGAGTT
* * ** * *
8509660 TGTGACACGCTAAGGTGAGAATATGTGAGACGACATGGTTAGCATATGTGACATGGTTGTGACAC
1 TGTGACACGCGAAGGTGAGAATATGTGAGACAACATGGCAAGAATATGTGACACGGTTGTGACAC
** *
8509725 GGTAGGGTTTAGAGTT
66 GACAAGGTTTAGAGTT
8509741 TGT
1 TGT
8509744 AATATGCCAT
Statistics
Matches: 69, Mismatches: 14, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
80 2 0.03
81 67 0.97
ACGTcount: A:0.29, C:0.11, G:0.33, T:0.27
Consensus pattern (81 bp):
TGTGACACGCGAAGGTGAGAATATGTGAGACAACATGGCAAGAATATGTGACACGGTTGTGACAC
GACAAGGTTTAGAGTT
Found at i:8509768 original size:104 final size:104
Alignment explanation
Indices: 8509660--8509847 Score: 279
Period size: 104 Copynumber: 1.8 Consensus size: 104
8509650 GTTTAGAGTT
* * *
8509660 TGTGACACGCTAAGGTGAGAATATGTGAGA-CGACATGGTTAGCATATGTGACATGGTTGTGACA
1 TGTGACACGCTAAGGTGAGAATATGTAAGACCG-CATGGTGAGAATATGTGACATGGTTGTGACA
*
8509724 CGGTAGGGTTTAGAGTTTGTAATATGCCATGAAGGGAATC
65 CGGCAGGGTTTAGAGTTTGTAATATGCCATGAAGGGAATC
* * * * *
8509764 TGTGACACGGTAGGGTGATAATTTGTAAGACCGCATGGTGAGAATATGTGACATGGTTGTGACAT
1 TGTGACACGCTAAGGTGAGAATATGTAAGACCGCATGGTGAGAATATGTGACATGGTTGTGACAC
8509829 GGCAGGGTTTAGAGTTTGT
66 GGCAGGGTTTAGAGTTTGT
8509848 GACACTCCAT
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
104 72 0.97
105 2 0.03
ACGTcount: A:0.27, C:0.11, G:0.33, T:0.29
Consensus pattern (104 bp):
TGTGACACGCTAAGGTGAGAATATGTAAGACCGCATGGTGAGAATATGTGACATGGTTGTGACAC
GGCAGGGTTTAGAGTTTGTAATATGCCATGAAGGGAATC
Found at i:8509781 original size:185 final size:185
Alignment explanation
Indices: 8509464--8509899 Score: 529
Period size: 185 Copynumber: 2.4 Consensus size: 185
8509454 GACATGGGAG
* * *
8509464 GGTTTAGAGTTTGTGACATGCCATGGTGAGAATATATGAAACGACATGGTGAGCATATGTGACAT
1 GGTTTAGAGTTTGTGACACGCCATGGTGAGAATATGTGAAACGACATGGTTAGCATATGTGACAT
* *
8509529 GGCTGTGACATGGCAGAGTTCAGAGTTTGTGACACTCCATTGAGAGAATCTGTGACACGGGAGGG
66 GGCTGTGACACGGCAGAGTTCAGAGTTTGTAACACTCCATTGAGAGAATCTGTGACACGGGAGGG
* *
8509594 TGATAATGTGTGAGACAACAAT-GCAAGAATATGTGACACGGTTGTGATACGACAA
131 TGATAATGTGTAAGACAAC-ATGGCAAGAATATGTGACACGGTTGTGACACGACAA
* * *
8509649 GGTTTAGAGTTTGTGACACGCTAAGGTGAGAATATGTGAGACGACATGGTTAGCATATGTGACAT
1 GGTTTAGAGTTTGTGACACGCCATGGTGAGAATATGTGAAACGACATGGTTAGCATATGTGACAT
* * * * * * *
8509714 GGTTGTGACACGGTAGGGTTTAGAGTTTGTAATA-TGCCA-TGAAGGGAATCTGTGACACGGTAG
66 GGCTGTGACACGGCAGAGTTCAGAGTTTGTAACACT-CCATTG-AGAGAATCTGTGACACGGGAG
* ** ** * * * *
8509777 GGTGATAATTTGTAAGACCGCATGGTGAGAATATGTGACATGGTTGTGACATGGCAG
129 GGTGATAATGTGTAAGACAACATGGCAAGAATATGTGACACGGTTGTGACACGACAA
* * * * *
8509834 GGTTTAGAGTTTGTGACACTCCATGGTGGGAATGTGTGACACGACATGGCTT-GAATATGTGACA
1 GGTTTAGAGTTTGTGACACGCCATGGTGAGAATATGTGAAACGACATGG-TTAGCATATGTGACA
8509898 TG
65 TG
8509900 CCATAGTTTG
Statistics
Matches: 214, Mismatches: 33, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
184 5 0.02
185 207 0.97
186 2 0.01
ACGTcount: A:0.28, C:0.12, G:0.32, T:0.28
Consensus pattern (185 bp):
GGTTTAGAGTTTGTGACACGCCATGGTGAGAATATGTGAAACGACATGGTTAGCATATGTGACAT
GGCTGTGACACGGCAGAGTTCAGAGTTTGTAACACTCCATTGAGAGAATCTGTGACACGGGAGGG
TGATAATGTGTAAGACAACATGGCAAGAATATGTGACACGGTTGTGACACGACAA
Found at i:8509858 original size:104 final size:104
Alignment explanation
Indices: 8509660--8509876 Score: 276
Period size: 104 Copynumber: 2.1 Consensus size: 104
8509650 GTTTAGAGTT
* * *
8509660 TGTGACACGCTAAGGTGAGAATATGTGAGACGACATGGTTAGCATATGTGACATGGTTGTGACAC
1 TGTGACACGCTAAGGTGAGAATATGTAAGACGACATGGTGAGAATATGTGACATGGTTGTGACAC
* *
8509725 GGTAGGGTTTAGAGTTTGTAATATGCCATGAAGGGAATC
66 GGCAGGGTTTAGAGTTTGTAACATGCCATGAAGGGAATC
* * * *
8509764 TGTGACACGGTAGGGTGATAATTTGTAAGACCG-CATGGTGAGAATATGTGACATGGTTGTGACA
1 TGTGACACGCTAAGGTGAGAATATGTAAGA-CGACATGGTGAGAATATGTGACATGGTTGTGACA
* * ** *
8509828 TGGCAGGGTTTAGAGTTTGTGACACT-CCATGGTGGGAATG
65 CGGCAGGGTTTAGAGTTTGTAACA-TGCCATGAAGGGAATC
8509868 TGTGACACG
1 TGTGACACG
8509877 ACATGGCTTG
Statistics
Matches: 97, Mismatches: 14, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
104 94 0.97
105 3 0.03
ACGTcount: A:0.27, C:0.12, G:0.33, T:0.28
Consensus pattern (104 bp):
TGTGACACGCTAAGGTGAGAATATGTAAGACGACATGGTGAGAATATGTGACATGGTTGTGACAC
GGCAGGGTTTAGAGTTTGTAACATGCCATGAAGGGAATC
Found at i:8510552 original size:63 final size:63
Alignment explanation
Indices: 8510450--8510570 Score: 190
Period size: 63 Copynumber: 1.9 Consensus size: 63
8510440 GGTTTTTAAC
8510450 GTGTCACCACATTAGGTATTTTAGGGCAGTTCGTGTAACGAG-TAAGTAATTACAGTGATTGGT
1 GTGTCACCACATTAGGTATTTTAGGGCAGTTCGTGTAACGAGAT-AGTAATTACAGTGATTGGT
* * * *
8510513 GTGTCACCACATTGGGTATTTTAGGGCAGTTTGTTTAACGAGATAGTAATTATAGTGA
1 GTGTCACCACATTAGGTATTTTAGGGCAGTTCGTGTAACGAGATAGTAATTACAGTGA
8510571 CTGACATGTC
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
63 52 0.98
64 1 0.02
ACGTcount: A:0.27, C:0.12, G:0.26, T:0.35
Consensus pattern (63 bp):
GTGTCACCACATTAGGTATTTTAGGGCAGTTCGTGTAACGAGATAGTAATTACAGTGATTGGT
Found at i:8510660 original size:31 final size:31
Alignment explanation
Indices: 8510624--8510732 Score: 164
Period size: 31 Copynumber: 3.5 Consensus size: 31
8510614 CTTAGCGTTG
* *
8510624 GCGTGTAACAACATTTGACTTGGTATGCTTA
1 GCGTGTAACAACATTTTACTTGGTATGCATA
* * *
8510655 ACGTGTAACAACATTTTACTTGATATGCATG
1 GCGTGTAACAACATTTTACTTGGTATGCATA
*
8510686 GCATGTAACAACATTTTACTTGGTATGCATA
1 GCGTGTAACAACATTTTACTTGGTATGCATA
8510717 GCGTGTAACAACATTT
1 GCGTGTAACAACATTT
8510733 ATTTCTTTCT
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 68 1.00
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35
Consensus pattern (31 bp):
GCGTGTAACAACATTTTACTTGGTATGCATA
Found at i:8515005 original size:31 final size:31
Alignment explanation
Indices: 8514947--8515046 Score: 121
Period size: 31 Copynumber: 3.2 Consensus size: 31
8514937 GAGCGTGGCA
* * * *
8514947 TGTCACCCCACAATACTGCAACAACTCAACG
1 TGTCACCCCATAATTCTGCTACCACTCAACG
* * *
8514978 TGTTACCCCATAATTCTGCTACCACTCAGCA
1 TGTCACCCCATAATTCTGCTACCACTCAACG
8515009 TGTCACCCCATAAATT-TGCTACCACTCAACG
1 TGTCACCCCAT-AATTCTGCTACCACTCAACG
8515040 TGTCACC
1 TGTCACC
8515047 ATAAAATGTC
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
31 54 0.93
32 4 0.07
ACGTcount: A:0.29, C:0.37, G:0.10, T:0.24
Consensus pattern (31 bp):
TGTCACCCCATAATTCTGCTACCACTCAACG
Found at i:8515166 original size:31 final size:31
Alignment explanation
Indices: 8515114--8515183 Score: 99
Period size: 31 Copynumber: 2.3 Consensus size: 31
8515104 AACAACTCAG
*
8515114 CGTGTCA-CCCATAATTCTGCTAGCACTTAA
1 CGTGTCACCCCATAATTCTGCTACCACTTAA
*
8515144 TGTGTCACCCCATAAATT-TGCTACCACTTAA
1 CGTGTCACCCCAT-AATTCTGCTACCACTTAA
8515175 CGTGTCACC
1 CGTGTCACC
8515184 ACAAAATGCC
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
30 6 0.17
31 25 0.71
32 4 0.11
ACGTcount: A:0.26, C:0.31, G:0.13, T:0.30
Consensus pattern (31 bp):
CGTGTCACCCCATAATTCTGCTACCACTTAA
Found at i:8515190 original size:137 final size:138
Alignment explanation
Indices: 8514869--8515215 Score: 455
Period size: 138 Copynumber: 2.5 Consensus size: 138
8514859 AACCACGTGG
** * * * * *
8514869 TGTGTCACTTCATAAATCTGCTAACACTCAGCATGTCACCACAAGATGTCATCAACATCTAACAA
1 TGTGTCACCCCATAAATTTGCTACCACTCAACGTGTCACCACAAAATGTCATCAACATCTAACAA
* * *
8514934 TTGGAGCGTGGCATGTCACCCCACAATACTGCAACAACTCAACGTGTTACCCCATAATTCTGCTA
66 TTGGAGCGTGACATGTCACCCCACAATACTCCAACAACTCAACGTGTCACCCCATAATTCTGCTA
*
8514999 CCACTCAG
131 CCACTCAA
** *
8515007 CATGTCACCCCATAAATTTGCTACCACTCAACGTGTCACCATAAAATGTCATCAACATCTAACAA
1 TGTGTCACCCCATAAATTTGCTACCACTCAACGTGTCACCACAAAATGTCATCAACATCTAACAA
* * *
8515072 TTGG-GACGTGACGTGTCACCTCACAATACTCCAACAACTCAGCGTGTCA-CCCATAATTCTGCT
66 TTGGAG-CGTGACATGTCACCCCACAATACTCCAACAACTCAACGTGTCACCCCATAATTCTGCT
* *
8515135 AGCACTTAA
130 ACCACTCAA
* * **
8515144 TGTGTCACCCCATAAATTTGCTACCACTTAACGTGTCACCACAAAATGCCATTGACATCTAACAA
1 TGTGTCACCCCATAAATTTGCTACCACTCAACGTGTCACCACAAAATGTCATCAACATCTAACAA
*
8515209 TTAGAGC
66 TTGGAGC
8515216 ATGTGGCTGA
Statistics
Matches: 180, Mismatches: 27, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
137 83 0.46
138 97 0.54
ACGTcount: A:0.32, C:0.30, G:0.13, T:0.25
Consensus pattern (138 bp):
TGTGTCACCCCATAAATTTGCTACCACTCAACGTGTCACCACAAAATGTCATCAACATCTAACAA
TTGGAGCGTGACATGTCACCCCACAATACTCCAACAACTCAACGTGTCACCCCATAATTCTGCTA
CCACTCAA
Found at i:8525140 original size:2 final size:2
Alignment explanation
Indices: 8525072--8525125 Score: 90
Period size: 2 Copynumber: 27.0 Consensus size: 2
8525062 AAAAGAGTTC
* *
8525072 AT AT AT AC AT AT AT AT AT AT AT AT AT AT AC AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8525114 AT AT AT AT AT AT
1 AT AT AT AT AT AT
8525126 GTGTGTGTAT
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:8533904 original size:202 final size:202
Alignment explanation
Indices: 8533543--8533943 Score: 581
Period size: 202 Copynumber: 2.0 Consensus size: 202
8533533 TTCTTGGTTG
* * *
8533543 ATATTAGCTTAATCAAATCCTTGGTTAAGGTGATTGGGAGATTATGAAATGAGTTTCATCAGTCT
1 ATATTAGCTTAATCAAATCCTTGGTCAAGGTGATTGGGAGATTATGAAATGAGTTTCATAAATCT
* *
8533608 TCATAAAGTTAATGATCTAACTGCAGAAACAAATATAGAGATAAATAAGAATAGACACTACACTA
66 TCATAAAGTTAATGATCTAACTGCAAAAACAAATATAGAGATAAATAAGAATAGACACTACACCA
** * * *
8533673 CGCTTTTATCATCTCCGAGATATATGTTGAGAAAATGAATTATATTAATAGACTATACACTGAAA
131 CAATTTTATCATCTCCAAGATACATGTTGAGAAAATGAATGATATTAATAGACTATACACTGAAA
8533738 GGTTGTC
196 GGTTGTC
* *
8533745 ATATTAGCTTAATCAAATTCTT-GTCCAAGGTGATTGGTAGATTATGAAATGAGTTTCATAAATC
1 ATATTAGCTTAATCAAATCCTTGGT-CAAGGTGATTGGGAGATTATGAAATGAGTTTCATAAATC
* * * *
8533809 TTCATAAAGTTAATGATCTAACTGCAAAAACAAATATGGAGATCAATAAGAGTAGACACTATACC
65 TTCATAAAGTTAATGATCTAACTGCAAAAACAAATATAGAGATAAATAAGAATAGACACTACACC
* ** * *
8533874 A-AATTCTTATTATCTCCAAGATACATGTTGAGGGAATGAATGATATTGATAGACTATACATTGA
130 ACAATT-TTATCATCTCCAAGATACATGTTGAGAAAATGAATGATATTAATAGACTATACACTGA
8533938 AAGGTT
194 AAGGTT
8533944 ATCAAAGAAC
Statistics
Matches: 176, Mismatches: 21, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
201 4 0.02
202 172 0.98
ACGTcount: A:0.39, C:0.12, G:0.17, T:0.32
Consensus pattern (202 bp):
ATATTAGCTTAATCAAATCCTTGGTCAAGGTGATTGGGAGATTATGAAATGAGTTTCATAAATCT
TCATAAAGTTAATGATCTAACTGCAAAAACAAATATAGAGATAAATAAGAATAGACACTACACCA
CAATTTTATCATCTCCAAGATACATGTTGAGAAAATGAATGATATTAATAGACTATACACTGAAA
GGTTGTC
Found at i:8534831 original size:19 final size:19
Alignment explanation
Indices: 8534807--8534851 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
8534797 ATGTCATTTT
8534807 TTATTAA-TTTTAAAAATAA
1 TTATTAATTTTTAAAAA-AA
8534826 TTATTATATTTTTAAAAAAA
1 TTATTA-ATTTTTAAAAAAA
8534846 TT-TTAA
1 TTATTAA
8534852 AAAAAAGAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
18 1 0.04
19 9 0.38
20 5 0.21
21 9 0.38
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
TTATTAATTTTTAAAAAAA
Found at i:8534842 original size:20 final size:19
Alignment explanation
Indices: 8534807--8534851 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 19
8534797 ATGTCATTTT
*
8534807 TTATTAATTTTAAAAATAA
1 TTATTAATTTTAAAAAAAA
*
8534826 TTATTATATTTTTAAAAAAA
1 TTATTA-ATTTTAAAAAAAA
8534846 TT-TTAA
1 TTATTAA
8534852 AAAAAAGAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 1 0.04
19 9 0.39
20 13 0.57
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
TTATTAATTTTAAAAAAAA
Found at i:8535434 original size:16 final size:17
Alignment explanation
Indices: 8535415--8535457 Score: 61
Period size: 16 Copynumber: 2.6 Consensus size: 17
8535405 TCTTTAAGTT
8535415 TTTTTTTAAAAAAAC-A
1 TTTTTTTAAAAAAACTA
* *
8535431 TTTTTTAAAAAAAACTG
1 TTTTTTTAAAAAAACTA
8535448 TTTTTTTAAA
1 TTTTTTTAAA
8535458 GCTTTTCAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
16 14 0.61
17 9 0.39
ACGTcount: A:0.44, C:0.05, G:0.02, T:0.49
Consensus pattern (17 bp):
TTTTTTTAAAAAAACTA
Found at i:8535619 original size:13 final size:12
Alignment explanation
Indices: 8535585--8535610 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
8535575 AAACTAAAGG
8535585 AAAAAAGTTTCA
1 AAAAAAGTTTCA
8535597 AAAAAAGTTTCA
1 AAAAAAGTTTCA
8535609 AA
1 AA
8535611 GAAGAGTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.62, C:0.08, G:0.08, T:0.23
Consensus pattern (12 bp):
AAAAAAGTTTCA
Found at i:8536189 original size:20 final size:19
Alignment explanation
Indices: 8536121--8536189 Score: 57
Period size: 20 Copynumber: 3.4 Consensus size: 19
8536111 CTTGAATTAA
*
8536121 AAATTTTTAAAAAATTAAT
1 AAATTTTTAAAAAATCAAT
* * **
8536140 ATAATATCTAAAAAATCTTT
1 A-AATTTTTAAAAAATCAAT
8536160 AAACTATTTTAAAAAATCAAAT
1 AAA-T-TTTTAAAAAATC-AAT
8536182 AAATTTTT
1 AAATTTTT
8536190 GTTTTTTTAT
Statistics
Matches: 37, Mismatches: 9, Indels: 7
0.70 0.17 0.13
Matches are distributed among these distances:
19 3 0.08
20 19 0.51
21 11 0.30
22 4 0.11
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.41
Consensus pattern (19 bp):
AAATTTTTAAAAAATCAAT
Found at i:8537729 original size:30 final size:30
Alignment explanation
Indices: 8537693--8537756 Score: 119
Period size: 30 Copynumber: 2.1 Consensus size: 30
8537683 TAAGAAGTTA
8537693 ATGAAGAGATTCAAAATGATCATAGAAATC
1 ATGAAGAGATTCAAAATGATCATAGAAATC
*
8537723 ATGAAGAGATTCAAAATGATCATCGAAATC
1 ATGAAGAGATTCAAAATGATCATAGAAATC
8537753 ATGA
1 ATGA
8537757 TGAAAAGGAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.48, C:0.11, G:0.17, T:0.23
Consensus pattern (30 bp):
ATGAAGAGATTCAAAATGATCATAGAAATC
Found at i:8540916 original size:2 final size:2
Alignment explanation
Indices: 8540909--8540938 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
8540899 GTATATCTAC
8540909 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8540939 GTCAACATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8547471 original size:29 final size:25
Alignment explanation
Indices: 8547410--8547471 Score: 61
Period size: 29 Copynumber: 2.2 Consensus size: 25
8547400 ACCTACTACT
8547410 ACCAACATAATGGAAACTAAAAGCA
1 ACCAACATAATGGAAACTAAAAGCA
*
8547435 AGGACAACAATAAATGGAAACTAAAAGACTA
1 A--CCAAC-AT-AATGGAAACTAAAAG-C-A
8547466 ACCAAC
1 ACCAAC
8547472 TACCAACGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
25 1 0.03
27 4 0.14
28 2 0.07
29 19 0.66
30 1 0.03
31 2 0.07
ACGTcount: A:0.56, C:0.19, G:0.13, T:0.11
Consensus pattern (25 bp):
ACCAACATAATGGAAACTAAAAGCA
Found at i:8548910 original size:15 final size:16
Alignment explanation
Indices: 8548892--8548922 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
8548882 GTCCCTTTCT
8548892 AAACCCT-AATCTTGA
1 AAACCCTAAATCTTGA
8548907 AAACCCTAAATCTTGA
1 AAACCCTAAATCTTGA
8548923 GAGAATCGGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.42, C:0.26, G:0.06, T:0.26
Consensus pattern (16 bp):
AAACCCTAAATCTTGA
Found at i:8571077 original size:167 final size:167
Alignment explanation
Indices: 8570801--8571114 Score: 583
Period size: 167 Copynumber: 1.9 Consensus size: 167
8570791 CTACCCAATT
8570801 TCTAATTATATTAGATTACAGCTTATAATTAATTAAAAATGAAAGGTGTGTTTGGGGAGAAGTCA
1 TCTAATTATATTAGATTACAGCTTATAATTAATTAAAAATGAAAGGTGTGTTTGGGGAGAAGTCA
8570866 TAAGTGACAATCTCACATATATACTTGTCATATTTAATTTAATTTACTTGAGATTCACAATATAT
66 TAAGTGACAATCTCACATATATACTTGTCATATTTAATTTAATTTACTTGAGATTCACAATATAT
8570931 ATTAAACTTTATTAATTGAATAAGATCAAGTAAAAGC
131 ATTAAACTTTATTAATTGAATAAGATCAAGTAAAAGC
** *
8570968 TCTAATTATATTAGATTAGGGCTTCTAATTAATTAAAAATGAAAGGTGTGTTTGGGGAGAAGTCA
1 TCTAATTATATTAGATTACAGCTTATAATTAATTAAAAATGAAAGGTGTGTTTGGGGAGAAGTCA
* *
8571033 TAAGTGACAATCTCACATATATACTTGTCATATTTAGTTTAATTTACTTGAGATTCACAATCTAT
66 TAAGTGACAATCTCACATATATACTTGTCATATTTAATTTAATTTACTTGAGATTCACAATATAT
8571098 ATTAAACTTTATTAATT
131 ATTAAACTTTATTAATT
8571115 TAATCGGCTG
Statistics
Matches: 142, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
167 142 1.00
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.39
Consensus pattern (167 bp):
TCTAATTATATTAGATTACAGCTTATAATTAATTAAAAATGAAAGGTGTGTTTGGGGAGAAGTCA
TAAGTGACAATCTCACATATATACTTGTCATATTTAATTTAATTTACTTGAGATTCACAATATAT
ATTAAACTTTATTAATTGAATAAGATCAAGTAAAAGC
Found at i:8574254 original size:20 final size:21
Alignment explanation
Indices: 8574221--8574263 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
8574211 AGTTTTTTTA
8574221 ATTTTTATTATATTATTT-ATT
1 ATTTTTATTATATT-TTTAATT
8574242 ATTTTTATT-TATTTTTAATT
1 ATTTTTATTATATTTTTAATT
8574262 AT
1 AT
8574264 NAATTTTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 3 0.14
20 9 0.43
21 9 0.43
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (21 bp):
ATTTTTATTATATTTTTAATT
Found at i:8574279 original size:129 final size:132
Alignment explanation
Indices: 8574136--8574390 Score: 457
Period size: 129 Copynumber: 2.0 Consensus size: 132
8574126 AATTTTTTAA
8574136 AATTTTTTAAGTTTCTCCACTCATTTTTTTCTCTTTTCTTTTCTATCATTGTGTTGTGAAATTAT
1 AATTTTTTAAGTTTCTCCACTCATTTTTTTCTCTTTTCTTTTCTATCATTGTGTTGTGAAATTAT
8574201 AAAAAGGTAAAG-TTTT-TTTAA-TTTT-TA-TTATATTATTTATTATTTTTATTTATTTTTAAT
66 AAAAAGGTAAAGTTTTTATTTAATTTTTCTATTTATATTA-TTATTATTTTTATTTATTTTTAAT
8574261 TAT
130 TAT
8574264 NAATTTTTTAAGTTTCTCCACTCATTTTTTTCTCTTTTCTTTTCTATCATTGTGTTGTGAAATTA
1 -AATTTTTTAAGTTTCTCCACTCATTTTTTTCTCTTTTCTTTTCTATCATTGTGTTGTGAAATTA
8574329 TAAAAAGGTAAAGTTTTTATTTAATTTTTCTATTTATATTATTATTATTTTTATTTATTTTT
65 TAAAAAGGTAAAGTTTTTATTTAATTTTTCTATTTATATTATTATTATTTTTATTTATTTTT
8574391 TTCAATTATA
Statistics
Matches: 121, Mismatches: 0, Indels: 6
0.95 0.00 0.05
Matches are distributed among these distances:
129 77 0.64
130 4 0.03
131 5 0.04
132 4 0.03
133 23 0.19
134 8 0.07
ACGTcount: A:0.25, C:0.08, G:0.06, T:0.60
Consensus pattern (132 bp):
AATTTTTTAAGTTTCTCCACTCATTTTTTTCTCTTTTCTTTTCTATCATTGTGTTGTGAAATTAT
AAAAAGGTAAAGTTTTTATTTAATTTTTCTATTTATATTATTATTATTTTTATTTATTTTTAATT
AT
Found at i:8574546 original size:16 final size:16
Alignment explanation
Indices: 8574512--8574559 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
8574502 TATTTATCAT
*
8574512 AATTTTTTTTATTATATG
1 AATTTTATTT-TTA-ATG
8574530 AATTTTATTTTTAATG
1 AATTTTATTTTTAATG
8574546 -ATTTTAATTTTTAA
1 AATTTT-ATTTTTAA
8574560 AAAATAAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
15 5 0.18
16 11 0.39
17 3 0.11
18 9 0.32
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (16 bp):
AATTTTATTTTTAATG
Found at i:8575320 original size:23 final size:25
Alignment explanation
Indices: 8575263--8575320 Score: 59
Period size: 23 Copynumber: 2.4 Consensus size: 25
8575253 TCACATTTCC
* *
8575263 TGTAATGTAAGTGATAAAATTACAA
1 TGTAATGTAAGAGATAAAAATACAA
*
8575288 TGT-TTGGTAAGAGA-AAAAAT-CAA
1 TGTAAT-GTAAGAGATAAAAATACAA
8575311 TGTAATGTAA
1 TGTAATGTAA
8575321 CATTACATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
23 10 0.37
24 7 0.26
25 10 0.37
ACGTcount: A:0.47, C:0.03, G:0.19, T:0.31
Consensus pattern (25 bp):
TGTAATGTAAGAGATAAAAATACAA
Found at i:8576268 original size:17 final size:17
Alignment explanation
Indices: 8576235--8576279 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
8576225 TAAAATCAAA
*
8576235 ATATT-TTAATATTTATT
1 ATATTATTAA-ATCTATT
8576252 ATATTATTAAATCTATT
1 ATATTATTAAATCTATT
*
8576269 ATTTTATTAAA
1 ATATTATTAAA
8576280 AAGGAATATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 21 0.84
18 4 0.16
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (17 bp):
ATATTATTAAATCTATT
Found at i:8576420 original size:98 final size:95
Alignment explanation
Indices: 8576219--8576523 Score: 372
Period size: 98 Copynumber: 3.2 Consensus size: 95
8576209 ATTGGTGTAC
*
8576219 ATCACTTAAAATCAAAATATTTTAATA-TTTA-TTATATTATTAAATCTATTATTTTATTAAAAA
1 ATCACTTAAAATCAAAATATTTTAATATTTTATTTATATTATTAAATTTATTATTTTATTAAAAA
* * *
8576282 GGAATATTCTATTTTAATTAAATAATATCCAA
66 GGAATATTAT-TTTTAATT-AATTATATCTAA
* * *
8576314 ATCACTTAAAATCATAGTAGTTTAATATTTTATTTTATATTATTAAATTTATTATTTTTATTAAA
1 ATCACTTAAAATCAAAATATTTTAATATTTTA-TTTATATTATTAAATTTATTA-TTTTATTAAA
8576379 AAGGAATATTATTTTCTAATTAATTATATCTAA
64 AAGGAATATTATTTT-TAATTAATTATATCTAA
* ** *
8576412 ATTACTTAAAAT-AAAATATTTTAATATTGGATGTGATATTATTAAATTTATTATTTTATT--AA
1 ATCACTTAAAATCAAAATATTTTAATATTTTAT-TTATATTATTAAATTTATTATTTTATTAAAA
* * *
8576474 A--AATAATATTTTTATTTAATTTATATATAA
65 AGGAATATTATTTTTAATTAA-TTATATCTAA
8576504 ATCACTTAAAATCAAAATAT
1 ATCACTTAAAATCAAAATAT
8576524 AGTGACAAAA
Statistics
Matches: 184, Mismatches: 18, Indels: 18
0.84 0.08 0.08
Matches are distributed among these distances:
91 6 0.03
92 30 0.16
93 7 0.04
94 3 0.02
95 24 0.13
96 12 0.07
97 33 0.18
98 43 0.23
99 26 0.14
ACGTcount: A:0.44, C:0.05, G:0.03, T:0.48
Consensus pattern (95 bp):
ATCACTTAAAATCAAAATATTTTAATATTTTATTTATATTATTAAATTTATTATTTTATTAAAAA
GGAATATTATTTTTAATTAATTATATCTAA
Found at i:8576472 original size:17 final size:18
Alignment explanation
Indices: 8576450--8576497 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 18
8576440 GGATGTGATA
8576450 TTATTAAATTTATTA-TT
1 TTATTAAATTTATTATTT
** *
8576467 TTATTAAAAATAATATTT
1 TTATTAAATTTATTATTT
*
8576485 TTATTTAATTTAT
1 TTATTAAATTTAT
8576498 ATATAAATCA
Statistics
Matches: 23, Mismatches: 7, Indels: 1
0.74 0.23 0.03
Matches are distributed among these distances:
17 12 0.52
18 11 0.48
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (18 bp):
TTATTAAATTTATTATTT
Found at i:8576592 original size:81 final size:80
Alignment explanation
Indices: 8576500--8576660 Score: 313
Period size: 81 Copynumber: 2.0 Consensus size: 80
8576490 TAATTTATAT
8576500 ATAAATCACTTAAAATCAAAATATAGTGACAAAATTGAAATAATAAGAATTTTATTAAAAGCATA
1 ATAAATCACTTAAAATCAAAATATAGTGACAAAATTGAAATAATAAGAATTTTATTAAAAGCATA
8576565 CTTACAAAATATACA
66 CTTACAAAATATACA
8576580 NATAAATCACTTAAAATCAAAATATAGTGACAAAATTGAAATAATAAGAATTTTATTAAAAGCAT
1 -ATAAATCACTTAAAATCAAAATATAGTGACAAAATTGAAATAATAAGAATTTTATTAAAAGCAT
8576645 ACTTACAAAATATACA
65 ACTTACAAAATATACA
8576661 CAAAAGTTCT
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
81 80 1.00
ACGTcount: A:0.55, C:0.10, G:0.06, T:0.29
Consensus pattern (80 bp):
ATAAATCACTTAAAATCAAAATATAGTGACAAAATTGAAATAATAAGAATTTTATTAAAAGCATA
CTTACAAAATATACA
Found at i:8576655 original size:40 final size:40
Alignment explanation
Indices: 8576528--8576655 Score: 118
Period size: 40 Copynumber: 3.2 Consensus size: 40
8576518 AAATATAGTG
8576528 ACAAAATTGAAATAATAAGAATTTTATTAAAAGCATACTT
1 ACAAAATTGAAATAATAAGAATTTTATTAAAAGCATACTT
** * ** * * * *
8576568 ACAAAATAT-ACANATAA-ATCACTTAAAATCAAAA-TATAGTG
1 ACAAAAT-TGA-A-ATAATAAGAATT-TTATTAAAAGCATACTT
8576609 ACAAAATTGAAATAATAAGAATTTTATTAAAAGCATACTT
1 ACAAAATTGAAATAATAAGAATTTTATTAAAAGCATACTT
8576649 ACAAAAT
1 ACAAAAT
8576656 ATACACAAAA
Statistics
Matches: 63, Mismatches: 18, Indels: 14
0.66 0.19 0.15
Matches are distributed among these distances:
39 10 0.16
40 25 0.40
41 18 0.29
42 10 0.16
ACGTcount: A:0.55, C:0.09, G:0.06, T:0.29
Consensus pattern (40 bp):
ACAAAATTGAAATAATAAGAATTTTATTAAAAGCATACTT
Found at i:8577042 original size:15 final size:15
Alignment explanation
Indices: 8577021--8577068 Score: 78
Period size: 15 Copynumber: 3.2 Consensus size: 15
8577011 ATATTATCTT
8577021 CTTATAATCATATTA
1 CTTATAATCATATTA
* *
8577036 TTTATAATCACATTA
1 CTTATAATCATATTA
8577051 CTTATAATCATATTA
1 CTTATAATCATATTA
8577066 CTT
1 CTT
8577069 GCAATCACAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.38, C:0.15, G:0.00, T:0.48
Consensus pattern (15 bp):
CTTATAATCATATTA
Found at i:8577056 original size:30 final size:30
Alignment explanation
Indices: 8577021--8577080 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
8577011 ATATTATCTT
* *
8577021 CTTATAATCATATTATTTATAATCACATTA
1 CTTATAATCATATTACTTACAATCACATTA
*
8577051 CTTATAATCATATTACTTGCAATCACATTA
1 CTTATAATCATATTACTTACAATCACATTA
8577081 TATTGTAAGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.17, G:0.02, T:0.43
Consensus pattern (30 bp):
CTTATAATCATATTACTTACAATCACATTA
Found at i:8577074 original size:15 final size:15
Alignment explanation
Indices: 8577021--8577080 Score: 75
Period size: 15 Copynumber: 4.0 Consensus size: 15
8577011 ATATTATCTT
*
8577021 CTTATAATCATATTA
1 CTTATAATCACATTA
*
8577036 TTTATAATCACATTA
1 CTTATAATCACATTA
*
8577051 CTTATAATCATATTA
1 CTTATAATCACATTA
**
8577066 CTTGCAATCACATTA
1 CTTATAATCACATTA
8577081 TATTGTAAGG
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 38 1.00
ACGTcount: A:0.38, C:0.17, G:0.02, T:0.43
Consensus pattern (15 bp):
CTTATAATCACATTA
Found at i:8578658 original size:129 final size:129
Alignment explanation
Indices: 8578428--8578685 Score: 516
Period size: 129 Copynumber: 2.0 Consensus size: 129
8578418 TCACAACTCC
8578428 TGAAAGTTCAAATATCCAACTTCGGTACTCTTTCCTGACACCTAAACAAATTACATTGTCATAAT
1 TGAAAGTTCAAATATCCAACTTCGGTACTCTTTCCTGACACCTAAACAAATTACATTGTCATAAT
8578493 TACCATTTATATAGATGACTTAATTAGTTAGCTGTGATTCAAAAAACTCCACGTAATTAGGGTA
66 TACCATTTATATAGATGACTTAATTAGTTAGCTGTGATTCAAAAAACTCCACGTAATTAGGGTA
8578557 TGAAAGTTCAAATATCCAACTTCGGTACTCTTTCCTGACACCTAAACAAATTACATTGTCATAAT
1 TGAAAGTTCAAATATCCAACTTCGGTACTCTTTCCTGACACCTAAACAAATTACATTGTCATAAT
8578622 TACCATTTATATAGATGACTTAATTAGTTAGCTGTGATTCAAAAAACTCCACGTAATTAGGGTA
66 TACCATTTATATAGATGACTTAATTAGTTAGCTGTGATTCAAAAAACTCCACGTAATTAGGGTA
8578686 CCTGTCCAAA
Statistics
Matches: 129, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
129 129 1.00
ACGTcount: A:0.36, C:0.19, G:0.12, T:0.33
Consensus pattern (129 bp):
TGAAAGTTCAAATATCCAACTTCGGTACTCTTTCCTGACACCTAAACAAATTACATTGTCATAAT
TACCATTTATATAGATGACTTAATTAGTTAGCTGTGATTCAAAAAACTCCACGTAATTAGGGTA
Found at i:8587618 original size:20 final size:20
Alignment explanation
Indices: 8587582--8587619 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
8587572 TAAAACACAC
*
8587582 AAATAATAAAATTTAAATTT
1 AAATAATAAAATATAAATTT
8587602 AAATAATCAAAA-ATAAAT
1 AAATAAT-AAAATATAAAT
8587620 ATCTCAAAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.32
Consensus pattern (20 bp):
AAATAATAAAATATAAATTT
Found at i:8588378 original size:345 final size:345
Alignment explanation
Indices: 8587741--8588415 Score: 860
Period size: 345 Copynumber: 1.9 Consensus size: 345
8587731 CACCCACCCA
* *
8587741 TATATATATATATATAACAATTATATTCCTTTTAAATGAACTTAATATATATAAAGTCTACATAT
1 TATATATATATATATAACAATTATATTCCTTATAAATGAAC-TAATATATATAAACTCTACATAT
* *
8587806 TAAAAGACATTACAAGTTAATTAATAATTATAGTTTCATGAATTAATTTAATTAACTATAAGAGT
65 TAAAAGACATTACAAGTGAATTAATAATAATAGTTTCATGAATTAATTTAATTAACTATAAGAGT
* * * * *
8587871 TTGTTCTTAATTACATTAAATTAAAAAAAATAACTACATTTCAAAACTATTCTAATCTCACAACT
130 TTGTTCTTAATTACATGAAAATAAAAAAAATAACTACATTCCAAAACTATTCTAATATCAAAACT
* * * *
8587936 TCTCTTTAGGTTTATCTATTATAAGTTTATATAAACAAAGTTATATATATATTATAATTGATAAT
195 TCTCTTTAAGTATATATATTATAAGTTTATATAAACAAAG-T-TATATATATTATAATTAATAAT
* * * * *
8588001 TTTATAAGTTATAGTTTTGTAATGTTAACACAAAATAAAAAGTAAATATGTTTATATTTAAAGTA
258 TTTACAAGTCATAGTTTTGTAATGTAAACACAAAATAAAAAGTAAATATATTTATATTAAAAGTA
8588066 TATATATACTAAAAATATTTTAG
323 TATATATACTAAAAATATTTTAG
** * * * *
8588089 TATATATATATA-ATAGTAATTATATTTCTTATAAATTAA-TACA-ATATATAAACTGTATATAT
1 TATATATATATATATAACAATTATATTCCTTATAAATGAACTA-ATATATATAAACTCTACATAT
* * *
8588151 TGAAAGACATTACAAGTGAATTAATAATAATTGTTTCATGAATTAATTTAATTAACTATATG-GA
65 TAAAAGACATTACAAGTGAATTAATAATAATAGTTTCATGAATTAATTTAATTAACTATAAGAG-
* * ** **
8588215 TTTG-TCTTTAATTTCATGAAAAT-AAGAAAATAGTTAGGTTCCAAAACTATTCTAATATCAAAA
129 TTTGTTC-TTAATTACATGAAAATAAAAAAAATAACTACATTCCAAAACTATTCTAATATCAAAA
* * *
8588278 GTTCTCTTTAAGTATATATGTTATAAGTTTATATAAATAATAG-TATATATATTATAATTAATAA
193 CTTCTCTTTAAGTATATATATTATAAGTTTATATAAACAA-AGTTATATATATTATAATTAATAA
* * *
8588342 TTTTACAAGTCATAATTTTTGTAATGCTAAAACACAAAATAGAAAGTAAATATATTTATGTTAAA
257 TTTTACAAGTCAT-AGTTTTGTAATG-T-AAACACAAAATAAAAAGTAAATATATTTATATTAAA
8588407 AGTATATAT
319 AGTATATAT
8588416 GTAATAGTTA
Statistics
Matches: 281, Mismatches: 39, Indels: 17
0.83 0.12 0.05
Matches are distributed among these distances:
342 31 0.11
343 11 0.04
344 70 0.25
345 134 0.48
346 1 0.00
347 22 0.08
348 12 0.04
ACGTcount: A:0.44, C:0.07, G:0.07, T:0.41
Consensus pattern (345 bp):
TATATATATATATATAACAATTATATTCCTTATAAATGAACTAATATATATAAACTCTACATATT
AAAAGACATTACAAGTGAATTAATAATAATAGTTTCATGAATTAATTTAATTAACTATAAGAGTT
TGTTCTTAATTACATGAAAATAAAAAAAATAACTACATTCCAAAACTATTCTAATATCAAAACTT
CTCTTTAAGTATATATATTATAAGTTTATATAAACAAAGTTATATATATTATAATTAATAATTTT
ACAAGTCATAGTTTTGTAATGTAAACACAAAATAAAAAGTAAATATATTTATATTAAAAGTATAT
ATATACTAAAAATATTTTAG
Found at i:8589127 original size:25 final size:25
Alignment explanation
Indices: 8589097--8589147 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 25
8589087 TTTCTTGAAG
*
8589097 TCAATTTTCTAGACT-CTGTTTCTTT
1 TCAATTTTCTAGAATCCT-TTTCTTT
8589122 TCAATTTTCTAGAATCCTTTTCTTT
1 TCAATTTTCTAGAATCCTTTTCTTT
8589147 T
1 T
8589148 TCACTGACGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 22 0.92
26 2 0.08
ACGTcount: A:0.18, C:0.20, G:0.06, T:0.57
Consensus pattern (25 bp):
TCAATTTTCTAGAATCCTTTTCTTT
Found at i:8602368 original size:2 final size:2
Alignment explanation
Indices: 8602361--8602395 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
8602351 GACAAACTTA
8602361 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8602396 GAAGGTAAGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8603230 original size:35 final size:35
Alignment explanation
Indices: 8603180--8603310 Score: 127
Period size: 35 Copynumber: 3.7 Consensus size: 35
8603170 AATAATTATT
* * *
8603180 ATAAGTGAATCACTATTTCACGTAAAACAACTAAA
1 ATAAGTGAAGCACTACTTCACGCAAAACAACTAAA
* * * * * * * *
8603215 ACAAGTGAAGTACTATTTTACACAGAATAATTAAA
1 ATAAGTGAAGCACTACTTCACGCAAAACAACTAAA
* *
8603250 ATAAGGGAAGCGCTACTTCACGCAAAACAACTAAA
1 ATAAGTGAAGCACTACTTCACGCAAAACAACTAAA
* *
8603285 GTAAGTGAAGCACTACTTCACACAAA
1 ATAAGTGAAGCACTACTTCACGCAAA
8603311 TAGTAGTAGA
Statistics
Matches: 73, Mismatches: 23, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
35 73 1.00
ACGTcount: A:0.47, C:0.18, G:0.13, T:0.22
Consensus pattern (35 bp):
ATAAGTGAAGCACTACTTCACGCAAAACAACTAAA
Found at i:8603516 original size:29 final size:28
Alignment explanation
Indices: 8603484--8603539 Score: 67
Period size: 29 Copynumber: 2.0 Consensus size: 28
8603474 CGTGTAACTA
*
8603484 TTCACATACAACTTCTTCTTTTATACTTG
1 TTCACATACAACTTCTTCTCTTA-ACTTG
* * *
8603513 TTCACGTACACCTTTTTCTCTTAACTT
1 TTCACATACAACTTCTTCTCTTAACTT
8603540 ATTCTTATAT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
28 4 0.17
29 19 0.83
ACGTcount: A:0.21, C:0.27, G:0.04, T:0.48
Consensus pattern (28 bp):
TTCACATACAACTTCTTCTCTTAACTTG
Found at i:8605465 original size:45 final size:44
Alignment explanation
Indices: 8605400--8605484 Score: 134
Period size: 45 Copynumber: 1.9 Consensus size: 44
8605390 TATGAAAACA
*
8605400 AAATTTATTTATATGATACTAATTGCAAAAAATAATCACAAGATG
1 AAATTTATTTATACGATACTAATTGC-AAAAATAATCACAAGATG
* *
8605445 AAATTTATTTGTACGGTACTAATTGCAAAAATAATCACAA
1 AAATTTATTTATACGATACTAATTGCAAAAATAATCACAA
8605485 CATGTTTTCA
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
44 14 0.38
45 23 0.62
ACGTcount: A:0.47, C:0.11, G:0.09, T:0.33
Consensus pattern (44 bp):
AAATTTATTTATACGATACTAATTGCAAAAATAATCACAAGATG
Found at i:8605547 original size:26 final size:27
Alignment explanation
Indices: 8605518--8605575 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 27
8605508 TGGAGTTTAC
*
8605518 TTAAAATTGTAATATTTT-TTATATAA
1 TTAAAATTGTAATATTTTATTAGATAA
*
8605544 TTAAAATTTTAATATTTTATTAGATAA
1 TTAAAATTGTAATATTTTATTAGATAA
*
8605571 ATAAA
1 TTAAA
8605576 TAAAAATAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 17 0.61
27 11 0.39
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (27 bp):
TTAAAATTGTAATATTTTATTAGATAA
Found at i:8605623 original size:68 final size:69
Alignment explanation
Indices: 8605543--8605672 Score: 199
Period size: 68 Copynumber: 1.9 Consensus size: 69
8605533 TTTTTATATA
* * * *
8605543 ATTAAAATTTTAATATTTTATTAGATAAATAAAT-AAAAATAAATTTTAAATGAGATTTTGTGGT
1 ATTAAAACTTTAATATTTTATTAAATAAATAAATAAAAAATAAAATCTAAATGAGATTTTGTGGT
8605607 AAAT
66 AAAT
* *
8605611 ATTAAAACTTTAATATTTTGTTAAATAACTAAATAAAAAATAAAATCTAAATGAGATTTTGT
1 ATTAAAACTTTAATATTTTATTAAATAAATAAATAAAAAATAAAATCTAAATGAGATTTTGT
8605673 CTGAGCCCGG
Statistics
Matches: 55, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
68 30 0.55
69 25 0.45
ACGTcount: A:0.49, C:0.02, G:0.08, T:0.41
Consensus pattern (69 bp):
ATTAAAACTTTAATATTTTATTAAATAAATAAATAAAAAATAAAATCTAAATGAGATTTTGTGGT
AAAT
Found at i:8606570 original size:23 final size:23
Alignment explanation
Indices: 8606540--8606583 Score: 72
Period size: 23 Copynumber: 1.9 Consensus size: 23
8606530 CTATACTCTC
8606540 GATTTCTCTCTT-CTACACTTTCA
1 GATTTCTCT-TTCCTACACTTTCA
8606563 GATTTCTCTTTCCTACACTTT
1 GATTTCTCTTTCCTACACTTT
8606584 TAAAACACCA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 2 0.10
23 18 0.90
ACGTcount: A:0.16, C:0.30, G:0.05, T:0.50
Consensus pattern (23 bp):
GATTTCTCTTTCCTACACTTTCA
Found at i:8607057 original size:30 final size:29
Alignment explanation
Indices: 8606991--8607057 Score: 73
Period size: 30 Copynumber: 2.3 Consensus size: 29
8606981 TGAATATGGG
* * *
8606991 GTATAATAATAATATTTTTTCAACTTGAC
1 GTATAACAACAATATTTTTTCAACTTAAC
8607020 GTATAACAACAATATTTTTTTCAA-TATAAC
1 GTATAACAACAATA-TTTTTTCAACT-TAAC
*
8607050 GTGTAACA
1 GTATAACA
8607058 TGTTTTTGTA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
29 13 0.41
30 19 0.59
ACGTcount: A:0.40, C:0.12, G:0.07, T:0.40
Consensus pattern (29 bp):
GTATAACAACAATATTTTTTCAACTTAAC
Found at i:8607148 original size:81 final size:81
Alignment explanation
Indices: 8606974--8607148 Score: 199
Period size: 83 Copynumber: 2.1 Consensus size: 81
8606964 GTATAACAAA
* * * * *
8606974 ATGTTTTTGAATATGGGGTATAATAATAATATTTTTTCAACTTGACGTATAACAACAATATTTTT
1 ATGTTTTTGTATATGGGGTACAACAACAATATTTTTTCAACATGACGTATAACAAC-A-ATTTTT
8607039 TTCAATATAACGTGTAAC
64 TTCAATATAACGTGTAAC
* * *
8607057 ATGTTTTTGTATATGGTGTGCAACAACAATATTTTTCTCAACATGACGTATAACAAC-CTTTTTT
1 ATGTTTTTGTATATGGGGTACAACAACAATATTTTT-TCAACATGACGTATAACAACAATTTTTT
* * * * *
8607121 TGACTGTAATGTGTAAT
65 TCAATATAACGTGTAAC
8607138 ATGTTTTTGTA
1 ATGTTTTTGTA
8607149 CTTAATAATA
Statistics
Matches: 78, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
81 29 0.37
83 30 0.38
84 19 0.24
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (81 bp):
ATGTTTTTGTATATGGGGTACAACAACAATATTTTTTCAACATGACGTATAACAACAATTTTTTT
CAATATAACGTGTAAC
Found at i:8607206 original size:26 final size:25
Alignment explanation
Indices: 8607161--8607235 Score: 73
Period size: 24 Copynumber: 3.0 Consensus size: 25
8607151 TAATAATAAT
8607161 TTTTTTTAACATAGCATGTAACAAC
1 TTTTTTTAACATAGCATGTAACAAC
* * *
8607186 TTTTTTTAACCATGGCGTGTAACATAA
1 TTTTTTTAA-CATAGCATGTAACA-AC
* *
8607213 TTTTGTT--CATAGCGTGTAACAAC
1 TTTTTTTAACATAGCATGTAACAAC
8607236 AATATTTTTT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
23 1 0.02
24 13 0.31
25 9 0.21
26 12 0.29
27 7 0.17
ACGTcount: A:0.31, C:0.16, G:0.13, T:0.40
Consensus pattern (25 bp):
TTTTTTTAACATAGCATGTAACAAC
Found at i:8607269 original size:25 final size:26
Alignment explanation
Indices: 8607236--8607290 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 26
8607226 GTGTAACAAC
*
8607236 AATATTTTTTTTCAACATG-GA-GTGT
1 AATAATTTTTTTCAAC-TGTGACGTGT
*
8607261 AATAATTTTTTTTAACTGTGACGTGT
1 AATAATTTTTTTCAACTGTGACGTGT
8607287 AATA
1 AATA
8607291 TGTTTTTGTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 2 0.08
25 16 0.62
26 8 0.31
ACGTcount: A:0.31, C:0.07, G:0.15, T:0.47
Consensus pattern (26 bp):
AATAATTTTTTTCAACTGTGACGTGT
Found at i:8607286 original size:26 final size:26
Alignment explanation
Indices: 8607239--8607356 Score: 86
Period size: 26 Copynumber: 4.5 Consensus size: 26
8607229 TAACAACAAT
8607239 ATTTTTTTTCAAC-ATGGA-GTGTAATA
1 ATTTTTTTT-AACTAT-GACGTGTAATA
*
8607265 ATTTTTTTTAACTGTGACGTGTAAT-
1 ATTTTTTTTAACTATGACGTGTAATA
*
8607290 ATGTTTTTGT-A-TATGACGTGTAACAATA
1 AT-TTTTTTTAACTATGACGTGT---AATA
* *
8607318 ATATTTTTTTCAA-TATAATGTGTAATA
1 AT-TTTTTTT-AACTATGACGTGTAATA
8607345 ATTTTTTTTAAC
1 ATTTTTTTTAAC
8607357 CATGGTGTGT
Statistics
Matches: 75, Mismatches: 7, Indels: 20
0.74 0.07 0.20
Matches are distributed among these distances:
24 9 0.12
25 10 0.13
26 30 0.40
27 9 0.12
28 8 0.11
30 9 0.12
ACGTcount: A:0.31, C:0.07, G:0.13, T:0.50
Consensus pattern (26 bp):
ATTTTTTTTAACTATGACGTGTAATA
Found at i:8607394 original size:80 final size:81
Alignment explanation
Indices: 8607159--8607386 Score: 259
Period size: 80 Copynumber: 2.8 Consensus size: 81
8607149 CTTAATAATA
* * * ** *
8607159 ATTTTTTTT-AACATAGCA-TGTAACAACTTTTTTTAACCATGGCGTGTAACATAATTTTGTTCA
1 ATTTTTTTTCAACAT-GAAGTGTAATAATTTTTTTTAACCATGGCGTGTAACATGTTTTTGTACA
8607222 TAGCGTGTAACAACAAT
65 TAGCGTGTAACAACAAT
* ** * * *
8607239 ATTTTTTTTCAACATGGAGTGTAATAATTTTTTTTAACTGTGACGTGTAATATGTTTTTGTATAT
1 ATTTTTTTTCAACATGAAGTGTAATAATTTTTTTTAACCATGGCGTGTAACATGTTTTTGTACAT
*
8607304 -GACGTGTAACAATAAT
66 AG-CGTGTAACAACAAT
* *
8607320 A-TTTTTTTCAATAT-AATGTGTAATAATTTTTTTTAACCATGGTGTGTAACATGTTTTTGTACA
1 ATTTTTTTTCAACATGAA-GTGTAATAATTTTTTTTAACCATGGCGTGTAACATGTTTTTGTACA
8607383 TAGC
65 TAGC
8607387 ATATAACATC
Statistics
Matches: 123, Mismatches: 20, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
79 1 0.01
80 66 0.54
81 56 0.46
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.45
Consensus pattern (81 bp):
ATTTTTTTTCAACATGAAGTGTAATAATTTTTTTTAACCATGGCGTGTAACATGTTTTTGTACAT
AGCGTGTAACAACAAT
Found at i:8615091 original size:82 final size:82
Alignment explanation
Indices: 8614942--8615100 Score: 228
Period size: 82 Copynumber: 1.9 Consensus size: 82
8614932 TTTATTTTGA
* * * ** *
8614942 TTCATTCAATGATAATTTTTTATTATTTTGTTATTGTTGGTTTTAAGGTGCGCAAGTAGTTATTC
1 TTCATTCAATGATAATTTTTCATTATTTTGTTATTATTAGTTTTAAGGTGCGCAAGTAGGCAGTC
8615007 ACATTTACTTTAATGGG
66 ACATTTACTTTAATGGG
* * *
8615024 TTCATTCAATGATAGTTTTTCATTATTTTTTTATTATTAGTTTTAAGGTGCGCAATTAGGCAGTC
1 TTCATTCAATGATAATTTTTCATTATTTTGTTATTATTAGTTTTAAGGTGCGCAAGTAGGCAGTC
*
8615089 ACATTTGCTTTA
66 ACATTTACTTTA
8615101 CTTGTTTGTG
Statistics
Matches: 67, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
82 67 1.00
ACGTcount: A:0.25, C:0.10, G:0.16, T:0.50
Consensus pattern (82 bp):
TTCATTCAATGATAATTTTTCATTATTTTGTTATTATTAGTTTTAAGGTGCGCAAGTAGGCAGTC
ACATTTACTTTAATGGG
Found at i:8621499 original size:21 final size:21
Alignment explanation
Indices: 8621473--8621514 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
8621463 ATGCTGTAAA
*
8621473 GCATTAGTGACATGAGTTATG
1 GCATTAATGACATGAGTTATG
*
8621494 GCATTAATGAGATGAGTTATG
1 GCATTAATGACATGAGTTATG
8621515 ATCGGTTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.31, C:0.07, G:0.29, T:0.33
Consensus pattern (21 bp):
GCATTAATGACATGAGTTATG
Found at i:8627271 original size:27 final size:27
Alignment explanation
Indices: 8627241--8627300 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 27
8627231 TGACGTTTAT
8627241 ATTTTTA-ACATAATGTATAACAATTAA
1 ATTTTTAGACATAATGTATAAC-ATTAA
* * *
8627268 ATTTTAAGACATAATGTGTAACATTAC
1 ATTTTTAGACATAATGTATAACATTAA
8627295 ATTTTT
1 ATTTTT
8627301 TAAAGCTACC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 15 0.54
28 13 0.46
ACGTcount: A:0.42, C:0.08, G:0.07, T:0.43
Consensus pattern (27 bp):
ATTTTTAGACATAATGTATAACATTAA
Found at i:8628058 original size:55 final size:53
Alignment explanation
Indices: 8627996--8628181 Score: 174
Period size: 55 Copynumber: 3.4 Consensus size: 53
8627986 TGAACTGTTA
*
8627996 TTTTAGCGTGTCACGGCTGTTACTGGCGTGTTGTGGGTTAACTAGTTATTTGGGT
1 TTTTAGCGTGTCACGGCTGTT-CTGGCGTGTCGTGGGTTAACTAGTT-TTTGGGT
* * * * * *
8628051 TGTTAGCGTGTCACGGCTATTCCTGGGGTGTGGTGGGTTAACTGAATTTATGGGT
1 TTTTAGCGTGTCACGGCTGTT-CTGGCGTGTCGTGGGTTAACT-AGTTTTTGGGT
* * * * * * **
8628106 TTTTGGTGTGTCATGGTTGTTCTTGGTGTGTCGTGGGTTAACTGATTTTTTAAGT
1 TTTTAGCGTGTCACGGCTGTTC-TGGCGTGTCGTGGGTTAACT-AGTTTTTGGGT
*
8628161 TTTTAGCGTGTCACGGATGTT
1 TTTTAGCGTGTCACGGCTGTT
8628182 GGTGTAACCA
Statistics
Matches: 106, Mismatches: 23, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
54 1 0.01
55 102 0.96
56 3 0.03
ACGTcount: A:0.13, C:0.11, G:0.33, T:0.43
Consensus pattern (53 bp):
TTTTAGCGTGTCACGGCTGTTCTGGCGTGTCGTGGGTTAACTAGTTTTTGGGT
Found at i:8628238 original size:23 final size:23
Alignment explanation
Indices: 8628210--8628291 Score: 128
Period size: 23 Copynumber: 3.6 Consensus size: 23
8628200 TTACAGTGAT
8628210 TGGCGTGTCACGATAGTGATGCA
1 TGGCGTGTCACGATAGTGATGCA
*
8628233 TGGCGTGTCACGACAGTGATGCA
1 TGGCGTGTCACGATAGTGATGCA
* * *
8628256 TGGCGTGTAACGATACTGATTCA
1 TGGCGTGTCACGATAGTGATGCA
8628279 TGGCGTGTCACGA
1 TGGCGTGTCACGA
8628292 CAATTGACTT
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 53 1.00
ACGTcount: A:0.22, C:0.20, G:0.33, T:0.26
Consensus pattern (23 bp):
TGGCGTGTCACGATAGTGATGCA
Found at i:8631872 original size:31 final size:31
Alignment explanation
Indices: 8631826--8632132 Score: 341
Period size: 31 Copynumber: 10.0 Consensus size: 31
8631816 AATAAGAAAT
*
8631826 AAATG-TGAGACACGCCATGCATAACAAGTA
1 AAATGTTGTGACACGCCATGCATAACAAGTA
* * * *
8631856 AAATGTTATGACACGCCGTGCATATCAAATA
1 AAATGTTGTGACACGCCATGCATAACAAGTA
* * * *
8631887 AAATATTGTAACACGCCATTCATAACAAGAA
1 AAATGTTGTGACACGCCATGCATAACAAGTA
*** *
8631918 AAATGAAATGACACGCCATGCATAACAAGCA
1 AAATGTTGTGACACGCCATGCATAACAAGTA
*
8631949 AAATGTTGTGACACGCTATGCATAACAAGATA
1 AAATGTTGTGACACGCCATGCATAACAAG-TA
* * * *
8631981 AACT-TGGTGACACGCCAAGGATAACAAGTA
1 AAATGTTGTGACACGCCATGCATAACAAGTA
*
8632011 AAATGTTCTGACACGCCATGCATAACAAG-A
1 AAATGTTGTGACACGCCATGCATAACAAGTA
* *
8632041 AAAGGTTGTGACACGCCATGCATAACAAGTT
1 AAATGTTGTGACACGCCATGCATAACAAGTA
* * *
8632072 AAACGTTGTGACATGCCATGCATAACAATTA
1 AAATGTTGTGACACGCCATGCATAACAAGTA
* * *
8632103 AATTGTTCTGACCCGCCATGCATAACAAGT
1 AAATGTTGTGACACGCCATGCATAACAAGT
8632133 TCTGGTGTGT
Statistics
Matches: 225, Mismatches: 48, Indels: 7
0.80 0.17 0.03
Matches are distributed among these distances:
30 38 0.17
31 183 0.81
32 4 0.02
ACGTcount: A:0.40, C:0.21, G:0.18, T:0.21
Consensus pattern (31 bp):
AAATGTTGTGACACGCCATGCATAACAAGTA
Found at i:8632815 original size:14 final size:15
Alignment explanation
Indices: 8632796--8632856 Score: 63
Period size: 14 Copynumber: 4.1 Consensus size: 15
8632786 TATATCTGTT
*
8632796 TACAATGAAT-TGTA
1 TACAATAAATGTGTA
8632810 TACAATAAATTGTGTA
1 TACAATAAA-TGTGTA
*
8632826 TACAAAAAATGTGTA
1 TACAATAAATGTGTA
* *
8632841 TAAAATGAAT-TGTA
1 TACAATAAATGTGTA
8632855 TA
1 TA
8632857 AAAAAATTTA
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
14 14 0.35
15 14 0.35
16 12 0.30
ACGTcount: A:0.48, C:0.05, G:0.13, T:0.34
Consensus pattern (15 bp):
TACAATAAATGTGTA
Found at i:8632827 original size:16 final size:16
Alignment explanation
Indices: 8632806--8632853 Score: 62
Period size: 16 Copynumber: 3.1 Consensus size: 16
8632796 TACAATGAAT
8632806 TGTATACAATAAATTG
1 TGTATACAATAAATTG
*
8632822 TGTATACAA-AAAATG
1 TGTATACAATAAATTG
* *
8632837 TGTATAAAATGAATTG
1 TGTATACAATAAATTG
8632853 T
1 T
8632854 ATAAAAAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
15 13 0.48
16 14 0.52
ACGTcount: A:0.46, C:0.04, G:0.15, T:0.35
Consensus pattern (16 bp):
TGTATACAATAAATTG
Found at i:8632857 original size:14 final size:15
Alignment explanation
Indices: 8632806--8632863 Score: 59
Period size: 14 Copynumber: 3.9 Consensus size: 15
8632796 TACAATGAAT
*
8632806 TGTATACAATAAATTG
1 TGTATAAAATAAA-TG
8632822 TGTATACAAA-AAATG
1 TGTATA-AAATAAATG
*
8632837 TGTATAAAATGAAT-
1 TGTATAAAATAAATG
8632851 TGTATAAAA-AAAT
1 TGTATAAAATAAAT
8632864 TTATGTGTAC
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
13 3 0.08
14 12 0.32
15 11 0.30
16 9 0.24
17 2 0.05
ACGTcount: A:0.52, C:0.03, G:0.12, T:0.33
Consensus pattern (15 bp):
TGTATAAAATAAATG
Found at i:8634374 original size:31 final size:32
Alignment explanation
Indices: 8634330--8634626 Score: 170
Period size: 31 Copynumber: 9.5 Consensus size: 32
8634320 TCATAAACTG
* *
8634330 TAAAATGTTGTGACACGCCATGCATAACAAGA
1 TAAACTGTGGTGACACGCCATGCATAACAAGA
* * * * *
8634362 TAAACT-TGGTGACATGTCAAGGATAACGAGGA
1 TAAACTGTGGTGACACGCCATGCATAAC-AAGA
** * *
8634394 -AAA-TGTCATGACACGCCATGCAAAACAA-T
1 TAAACTGTGGTGACACGCCATGCATAACAAGA
* *
8634423 TAAAATGTTGTGACACGCCATGCATAACAAGA
1 TAAACTGTGGTGACACGCCATGCATAACAAGA
* *
8634455 TAAACT-TGGTGACACGCCAAGGATAACAAGCA
1 TAAACTGTGGTGACACGCCATGCATAACAAG-A
* *
8634487 -AAA-TGTTGG-GACACGCCATGCAAAACAA-T
1 TAAACTG-TGGTGACACGCCATGCATAACAAGA
* * * * *
8634516 TAAAATGTTGTGACATGCCAAGGATAACAAGCA
1 TAAACTGTGGTGACACGCCATGCATAACAAG-A
* ** * * *
8634549 -AAA-TATTCTAACACGCCATGCATATCAAAA
1 TAAACTGTGGTGACACGCCATGCATAACAAGA
* *
8634579 TCAAAC-GTTGTGACACGCCATGAATAACAAG-
1 T-AAACTGTGGTGACACGCCATGCATAACAAGA
* *
8634610 TAAAATGTTGTGACACG
1 TAAACTGTGGTGACACG
8634627 TTAAAGCTGA
Statistics
Matches: 199, Mismatches: 49, Indels: 35
0.70 0.17 0.12
Matches are distributed among these distances:
30 15 0.08
31 142 0.71
32 42 0.21
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.21
Consensus pattern (32 bp):
TAAACTGTGGTGACACGCCATGCATAACAAGA
Found at i:8634450 original size:62 final size:61
Alignment explanation
Indices: 8634331--8634626 Score: 209
Period size: 62 Copynumber: 4.8 Consensus size: 61
8634321 CATAAACTGT
* * * * * * * *
8634331 AAAATGTTGTGACACGCCATGCATAACAAGATAAACT-TGGTGACATGTCAAGGATAACGAGG
1 AAAATGTCGTGACACGCCATGCATAACAA-ATAAAATGTTGTGACACGCCATGCATAAC-AAG
* * *
8634393 AAAATGTCATGACACGCCATGCAAAACAATTAAAATGTTGTGACACGCCATGCATAACAAG
1 AAAATGTCGTGACACGCCATGCATAACAAATAAAATGTTGTGACACGCCATGCATAACAAG
* * * ** * * *
8634454 ATAAACT-TGGTGACACGCCAAGGATAACAAGCAAAATGTTGGGACACGCCATGCAAAACAATT
1 A-AAA-TGTCGTGACACGCCATGCATAACAAATAAAATGTTGTGACACGCCATGCATAACAA-G
* * * * ** * * * * *
8634517 AAAATGTTGTGACATGCCAAGGATAACAAGCAAAATATTCTAACACGCCATGCATATCAAA
1 AAAATGTCGTGACACGCCATGCATAACAAATAAAATGTTGTGACACGCCATGCATAACAAG
* * * *
8634578 ATCAAACGTTGTGACACGCCATGAATAACAAGTAAAATGTTGTGACACG
1 A--AAATGTCGTGACACGCCATGCATAACAAATAAAATGTTGTGACACG
8634627 TTAAAGCTGA
Statistics
Matches: 189, Mismatches: 38, Indels: 13
0.79 0.16 0.05
Matches are distributed among these distances:
61 10 0.05
62 139 0.74
63 40 0.21
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.20
Consensus pattern (61 bp):
AAAATGTCGTGACACGCCATGCATAACAAATAAAATGTTGTGACACGCCATGCATAACAAG
Found at i:8634490 original size:93 final size:93
Alignment explanation
Indices: 8634330--8634546 Score: 344
Period size: 93 Copynumber: 2.3 Consensus size: 93
8634320 TCATAAACTG
* * * *
8634330 TAAAATGTTGTGACACGCCATGCATAACAAGATAAACTTGGTGACATGTCAAGGATAACGAGGAA
1 TAAAATGTTGTGACACGCCATGCATAACAAGATAAACTTGGTGACACGCCAAGGATAACAAGCAA
*
8634395 AATGTCATGACACGCCATGCAAAACAAT
66 AATGTCAGGACACGCCATGCAAAACAAT
8634423 TAAAATGTTGTGACACGCCATGCATAACAAGATAAACTTGGTGACACGCCAAGGATAACAAGCAA
1 TAAAATGTTGTGACACGCCATGCATAACAAGATAAACTTGGTGACACGCCAAGGATAACAAGCAA
**
8634488 AATGTTGGGACACGCCATGCAAAACAAT
66 AATGTCAGGACACGCCATGCAAAACAAT
* * *
8634516 TAAAATGTTGTGACATGCCAAGGATAACAAG
1 TAAAATGTTGTGACACGCCATGCATAACAAG
8634547 CAAAATATTC
Statistics
Matches: 114, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 114 1.00
ACGTcount: A:0.41, C:0.18, G:0.21, T:0.20
Consensus pattern (93 bp):
TAAAATGTTGTGACACGCCATGCATAACAAGATAAACTTGGTGACACGCCAAGGATAACAAGCAA
AATGTCAGGACACGCCATGCAAAACAAT
Found at i:8634563 original size:93 final size:93
Alignment explanation
Indices: 8634330--8634626 Score: 323
Period size: 93 Copynumber: 3.2 Consensus size: 93
8634320 TCATAAACTG
* * * * * * *
8634330 TAAAATGTTGTGACACGCCATGCATAACAAGATAAACTTGGTGACATGTCAAGGATAACGAGGAA
1 TAAAATGTTGTGACACGCCAAGCATAACAAGATAAACTTGCTAACACGCCAAGGATAACAAGAAA
**
8634395 AATGTCATGACACGCCATGCAAAACAAT
66 AATGTTGTGACACGCCATGCAAAACAAT
* * * *
8634423 TAAAATGTTGTGACACGCCATGCATAACAAGATAAACTTGGTGACACGCCAAGGATAACAAGCAA
1 TAAAATGTTGTGACACGCCAAGCATAACAAGATAAACTTGCTAACACGCCAAGGATAACAAGAAA
*
8634488 AATGTTGGGACACGCCATGCAAAACAAT
66 AATGTTGTGACACGCCATGCAAAACAAT
* * * * * *
8634516 TAAAATGTTGTGACATGCCAAGGATAACAAGCA-AAA-TATTCTAACACGCCATGCATATCAA-A
1 TAAAATGTTGTGACACGCCAAGCATAACAAG-ATAAACT-TGCTAACACGCCAAGGATAACAAGA
* *
8634578 ATCAAACGTTGTGACACGCCATG-AATAACAAG
64 A--AAATGTTGTGACACGCCATGCAA-AACAAT
8634610 TAAAATGTTGTGACACG
1 TAAAATGTTGTGACACG
8634627 TTAAAGCTGA
Statistics
Matches: 178, Mismatches: 21, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
92 2 0.01
93 136 0.76
94 40 0.22
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.21
Consensus pattern (93 bp):
TAAAATGTTGTGACACGCCAAGCATAACAAGATAAACTTGCTAACACGCCAAGGATAACAAGAAA
AATGTTGTGACACGCCATGCAAAACAAT
Found at i:8635276 original size:156 final size:155
Alignment explanation
Indices: 8634982--8635485 Score: 661
Period size: 156 Copynumber: 3.2 Consensus size: 155
8634972 CGACTGGGTT
* * **
8634982 AACTACAATAACATATATAACTGTGTTATTCAATAATCATACATGAAATTGTTGAACATTAACCG
1 AACTGCAATTACATATATAACTGTGTTATTCAATAATCATGTATGAAATTGTTGAACATTAACCG
* * * * *
8635047 TTACAACTTTAATATCGTAACCAGCGGCTCGTTAGCAATCTGCGATGGAGCCGGACCGATCGGTG
66 TTACAACTTTAATATCCTTACC-GCGGCTCGTTAGCAGTCTGCGGTGGAGCCGGATCGATCGGTG
**
8635112 CTTCAGGACCTGTCGTCGCTTCCACA
130 CTTCAGGACCTGTCGTCGCTTCCGTA
* * * *
8635138 TACTGTAATTACATATTTAACTGTGTTATTCAATAATCATGTATGAAATTGTTGAACATTAACTG
1 AACTGCAATTACATATATAACTGTGTTATTCAATAATCATGTATGAAATTGTTGAACATTAACCG
* * * *
8635203 TTACAACTTTAATATCTTTACCGCCTGCTCGTTAGCAGCCTACGGTGGAGCCGGATCGATCGGTG
66 TTACAACTTTAATATCCTTACCG-CGGCTCGTTAGCAGTCTGCGGTGGAGCCGGATCGATCGGTG
** *
8635268 CTTCAGGACCTGTCGTTACTTTCGTA
130 CTTCAGGACCTGTCGTCGCTTCCGTA
*
8635294 AACTGCAATTACATATATAACTGTGTTATTCAATAATCATGTTTTG-AATTGTTGAACATTAACC
1 AACTGCAATTACATATATAACTGTGTTATTCAATAATCATG-TATGAAATTGTTGAACATTAACC
* * *
8635358 GTTACAACTTTAATATCCTTACCGTCGGCTCGTTAGCTGTTTGCGGTTGG-GCTGGATCGATCGG
65 GTTACAACTTTAATATCCTTACCG-CGGCTCGTTAGCAGTCTGCGG-TGGAGCCGGATCGATCGG
* * *
8635422 TGCTTGAGGACCTATCATCGCTTCCGTA
128 TGCTTCAGGACCTGTCGTCGCTTCCGTA
* * *
8635450 AACTGCAATTACATAAATTACTGTGTTACTCAATAA
1 AACTGCAATTACATATATAACTGTGTTATTCAATAA
8635486 ACATATGTGA
Statistics
Matches: 302, Mismatches: 43, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
155 1 0.00
156 295 0.98
157 6 0.02
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (155 bp):
AACTGCAATTACATATATAACTGTGTTATTCAATAATCATGTATGAAATTGTTGAACATTAACCG
TTACAACTTTAATATCCTTACCGCGGCTCGTTAGCAGTCTGCGGTGGAGCCGGATCGATCGGTGC
TTCAGGACCTGTCGTCGCTTCCGTA
Found at i:8637555 original size:31 final size:31
Alignment explanation
Indices: 8637134--8637553 Score: 473
Period size: 31 Copynumber: 13.5 Consensus size: 31
8637124 CATTGTAATC
* *
8637134 AAAATATTGTGACACGCCATGCATAACAAGT
1 AAAATGTTGTCACACGCCATGCATAACAAGT
* *
8637165 AAAATGTTATGACACGCCATGCATAACAAGT
1 AAAATGTTGTCACACGCCATGCATAACAAGT
* * * *
8637196 TAAACGTTGTGACACGCCATGCATATCAAGT
1 AAAATGTTGTCACACGCCATGCATAACAAGT
* * * * * *
8637227 TAAAGGTTATGACATGCCATGCATATCAAGT
1 AAAATGTTGTCACACGCCATGCATAACAAGT
*
8637258 AAAATGTTGTCAAACGCCATGCATAACAAGT
1 AAAATGTTGTCACACGCCATGCATAACAAGT
*
8637289 AAAATGTTGTCAAACGCCATGCATAACAAGT
1 AAAATGTTGTCACACGCCATGCATAACAAGT
* * * *
8637320 AAAATTTTGTGACACGACATGCATATCAAGT
1 AAAATGTTGTCACACGCCATGCATAACAAGT
* * * *
8637351 AAAATGCTGTCAAACACCATGCATAACAATT
1 AAAATGTTGTCACACGCCATGCATAACAAGT
* * *
8637382 AAAATGCTGTCAAACGCCATGCATAACAAAT
1 AAAATGTTGTCACACGCCATGCATAACAAGT
* * *
8637413 AAAATGCTGTCAAACGTCATGCATAACAAGT
1 AAAATGTTGTCACACGCCATGCATAACAAGT
* * *
8637444 AAAAT-TCTGTGACACGACATGCATATCAAGT
1 AAAATGT-TGTCACACGCCATGCATAACAAGT
* *
8637475 AAAATGTTGTCACACGCTATGCATATCAAGT
1 AAAATGTTGTCACACGCCATGCATAACAAGT
* *
8637506 AAAATGTTGTCACACGCTATGCATATCAAGT
1 AAAATGTTGTCACACGCCATGCATAACAAGT
* *
8637537 AAAATGCTATCACACGC
1 AAAATGTTGTCACACGC
8637554 TAATAACTAA
Statistics
Matches: 344, Mismatches: 43, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
31 343 1.00
32 1 0.00
ACGTcount: A:0.40, C:0.20, G:0.16, T:0.25
Consensus pattern (31 bp):
AAAATGTTGTCACACGCCATGCATAACAAGT
Done.