Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38630433
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 2298367 characters in sequence are not A, C, G, or T
File 29 of 97
Found at i:12261411 original size:17 final size:17
Alignment explanation
Indices: 12261391--12261423 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
12261381 TCATTTACGT
12261391 GTTTTCATTTT-TGTTTA
1 GTTTTC-TTTTGTGTTTA
12261408 GTTTTCTTTTGTGTTT
1 GTTTTCTTTTGTGTTT
12261424 TTGTCTTGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.06, C:0.06, G:0.15, T:0.73
Consensus pattern (17 bp):
GTTTTCTTTTGTGTTTA
Found at i:12265878 original size:30 final size:32
Alignment explanation
Indices: 12265842--12265910 Score: 81
Period size: 31 Copynumber: 2.2 Consensus size: 32
12265832 TATGGTTTTG
* * *
12265842 TTGAATATTA-TTTGC-TAGTTATTATGGATA
1 TTGAATATTACCTTGCTTAGCTACTATGGATA
12265872 TTGAATA-TACCTTGCTTAGCTACTATGGATA
1 TTGAATATTACCTTGCTTAGCTACTATGGATA
*
12265903 TTGTATAT
1 TTGAATAT
12265911 CTTATTTAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
29 2 0.06
30 11 0.34
31 19 0.59
ACGTcount: A:0.29, C:0.09, G:0.16, T:0.46
Consensus pattern (32 bp):
TTGAATATTACCTTGCTTAGCTACTATGGATA
Found at i:12265924 original size:29 final size:30
Alignment explanation
Indices: 12265864--12265933 Score: 79
Period size: 29 Copynumber: 2.3 Consensus size: 30
12265854 TGCTAGTTAT
* *
12265864 TATGGATATTGAATATACCTTGCTTAGCTAC
1 TATGGATATTG-ATATACCTTACTTAACTAC
* *
12265895 TATGGATATTG-TATATCTTATTTAACTAC
1 TATGGATATTGATATACCTTACTTAACTAC
*
12265924 TGTGGATATT
1 TATGGATATT
12265934 ATAAATATTT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
29 23 0.68
31 11 0.32
ACGTcount: A:0.29, C:0.11, G:0.16, T:0.44
Consensus pattern (30 bp):
TATGGATATTGATATACCTTACTTAACTAC
Found at i:12270564 original size:20 final size:20
Alignment explanation
Indices: 12270539--12270578 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
12270529 CTATAAATAT
12270539 CTCATTTCTCCAGCAGCTTC
1 CTCATTTCTCCAGCAGCTTC
*
12270559 CTCATTTTTCCAGCAGCTTC
1 CTCATTTCTCCAGCAGCTTC
12270579 TTGTTCTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.15, C:0.38, G:0.10, T:0.38
Consensus pattern (20 bp):
CTCATTTCTCCAGCAGCTTC
Found at i:12270796 original size:2 final size:2
Alignment explanation
Indices: 12270789--12270847 Score: 100
Period size: 2 Copynumber: 29.5 Consensus size: 2
12270779 GATATTTTAA
*
12270789 AG AG AG AG AA AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
*
12270831 AG AG AG AA AG AG AG AG A
1 AG AG AG AG AG AG AG AG A
12270848 CTTTCCAGAC
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 53 1.00
ACGTcount: A:0.54, C:0.00, G:0.46, T:0.00
Consensus pattern (2 bp):
AG
Found at i:12271398 original size:2 final size:2
Alignment explanation
Indices: 12271391--12271452 Score: 97
Period size: 2 Copynumber: 31.0 Consensus size: 2
12271381 TGCTATGTTG
12271391 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * *
12271433 AT TT AT AT CT AA AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT
12271453 GATACGTATT
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 54 1.00
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:12274308 original size:43 final size:43
Alignment explanation
Indices: 12274246--12274369 Score: 158
Period size: 43 Copynumber: 2.9 Consensus size: 43
12274236 ATTGACTTGG
* **
12274246 CTATGTGCGAGTAGGGAGTGTGCATAAGCTGGGGATGACCCGG
1 CTATGTGCGAGTAGGGAGTGTGCATAAGCTGGTGATGACCCAA
* * * **
12274289 TTATGTGCGAGTAGGGAGTGCGCATAACCCAGTGATGACCCAA
1 CTATGTGCGAGTAGGGAGTGTGCATAAGCTGGTGATGACCCAA
* *
12274332 CCATGTGCGAGTAGGGAGTGTGCATGAGCTGGTGATGA
1 CTATGTGCGAGTAGGGAGTGTGCATAAGCTGGTGATGA
12274370 TGATGATGGG
Statistics
Matches: 66, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
43 66 1.00
ACGTcount: A:0.23, C:0.17, G:0.38, T:0.22
Consensus pattern (43 bp):
CTATGTGCGAGTAGGGAGTGTGCATAAGCTGGTGATGACCCAA
Found at i:12274396 original size:23 final size:23
Alignment explanation
Indices: 12274366--12274425 Score: 102
Period size: 23 Copynumber: 2.6 Consensus size: 23
12274356 TGAGCTGGTG
12274366 ATGATGATGATGGGATGGTGTGC
1 ATGATGATGATGGGATGGTGTGC
*
12274389 ATGATGATGATGGGATTGTGTGC
1 ATGATGATGATGGGATGGTGTGC
*
12274412 ATGATGGTGATGGG
1 ATGATGATGATGGG
12274426 TATATGTATA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.22, C:0.03, G:0.43, T:0.32
Consensus pattern (23 bp):
ATGATGATGATGGGATGGTGTGC
Found at i:12280661 original size:20 final size:21
Alignment explanation
Indices: 12280633--12280671 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
12280623 TAAATATCTC
12280633 ATTTCTCCAGCAGCTTCCTCA
1 ATTTCTCCAGCAGCTTCCTCA
12280654 ATTT-TCCAGCAGCTTCCT
1 ATTTCTCCAGCAGCTTCCT
12280672 GTTCTTTTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.18, C:0.36, G:0.10, T:0.36
Consensus pattern (21 bp):
ATTTCTCCAGCAGCTTCCTCA
Found at i:12280887 original size:2 final size:2
Alignment explanation
Indices: 12280874--12280920 Score: 76
Period size: 2 Copynumber: 23.5 Consensus size: 2
12280864 TGGACATTTT
* *
12280874 AG AG AA AG AG AG AG AG AA AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
12280916 AG AG A
1 AG AG A
12280921 CTTTCCATGA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.55, C:0.00, G:0.45, T:0.00
Consensus pattern (2 bp):
AG
Found at i:12283102 original size:36 final size:35
Alignment explanation
Indices: 12283001--12283106 Score: 108
Period size: 35 Copynumber: 3.0 Consensus size: 35
12282991 TGCACACACT
* * *
12283001 GATGATATATGCCATGTGCGAG-GTGGGAGTGCACAA
1 GATGATA-CTGCCTTGTGCG-GTGTGGAAGTGCACAA
12283037 GATGATACTGCCTTGTGCGGTGTGGAAGTGCACAA
1 GATGATACTGCCTTGTGCGGTGTGGAAGTGCACAA
* * *
12283072 GATGATTCTAG-CTGTGTGTGGTGTTGAAGTGCACA
1 GATGATACT-GCCT-TGTGCGGTGTGGAAGTGCACA
12283107 TGAGCTACTG
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
34 1 0.02
35 33 0.54
36 27 0.44
ACGTcount: A:0.24, C:0.14, G:0.35, T:0.27
Consensus pattern (35 bp):
GATGATACTGCCTTGTGCGGTGTGGAAGTGCACAA
Found at i:12295216 original size:21 final size:22
Alignment explanation
Indices: 12295170--12295216 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
12295160 GGTGCCCTGC
* *
12295170 TTCTCGCTGTAGTGAGAAAGCA
1 TTCTCGCTGCAGCGAGAAAGCA
12295192 TTCTCGCTGCAGCGAGAAA-CA
1 TTCTCGCTGCAGCGAGAAAGCA
12295213 TTCT
1 TTCT
12295217 ATTTTGGCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 6 0.26
22 17 0.74
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (22 bp):
TTCTCGCTGCAGCGAGAAAGCA
Found at i:12304074 original size:21 final size:22
Alignment explanation
Indices: 12304048--12304105 Score: 91
Period size: 21 Copynumber: 2.6 Consensus size: 22
12304038 TATACATATA
*
12304048 CCCATCACCATCATGCACA-AT
1 CCCATCATCATCATGCACACAT
12304069 CCCATCATCATCATGCACACCAT
1 CCCATCATCATCATGCACA-CAT
12304092 CCCATCATCATCAT
1 CCCATCATCATCAT
12304106 CACCAGCTCA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
21 18 0.53
23 16 0.47
ACGTcount: A:0.31, C:0.43, G:0.03, T:0.22
Consensus pattern (22 bp):
CCCATCATCATCATGCACACAT
Found at i:12304189 original size:43 final size:43
Alignment explanation
Indices: 12304115--12304224 Score: 139
Period size: 43 Copynumber: 2.6 Consensus size: 43
12304105 TCACCAGCTC
**** *
12304115 ATGCGCACTCCCTACTCGCACATGGTTGGGTCATCATCGGGTT
1 ATGCGCACTCCCTACTCGCACATAACCGGGTCATCATCGGCTT
*
12304158 ATGCGCACTCCCTACTCGCACATAACCGGGTCATCCTCGGCTT
1 ATGCGCACTCCCTACTCGCACATAACCGGGTCATCATCGGCTT
* * *
12304201 ATGCCCACTCTCTACTCACACATA
1 ATGCGCACTCCCTACTCGCACATA
12304225 GTCGAGTTAA
Statistics
Matches: 58, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 58 1.00
ACGTcount: A:0.20, C:0.36, G:0.18, T:0.25
Consensus pattern (43 bp):
ATGCGCACTCCCTACTCGCACATAACCGGGTCATCATCGGCTT
Found at i:12307291 original size:17 final size:16
Alignment explanation
Indices: 12307265--12307299 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 16
12307255 AGTTTATAGT
12307265 GTGAGTTAATGTAATG
1 GTGAGTTAATGTAATG
12307281 GTGATGTTAATGTAATG
1 GTGA-GTTAATGTAATG
12307298 GT
1 GT
12307300 AGGTTCCAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 4 0.22
17 14 0.78
ACGTcount: A:0.29, C:0.00, G:0.31, T:0.40
Consensus pattern (16 bp):
GTGAGTTAATGTAATG
Found at i:12308381 original size:22 final size:22
Alignment explanation
Indices: 12308356--12308404 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
12308346 AATCCCAACA
12308356 TCGCTGCAACGAAAATTCATTC
1 TCGCTGCAACGAAAATTCATTC
* * *
12308378 TCGCTGCAGCGAAGATTCATTG
1 TCGCTGCAACGAAAATTCATTC
12308400 TCGCT
1 TCGCT
12308405 TTTGACTTGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (22 bp):
TCGCTGCAACGAAAATTCATTC
Found at i:12311638 original size:21 final size:20
Alignment explanation
Indices: 12311612--12311664 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
12311602 GCTCCTCAAC
* *
12311612 TTTATTTATTTTTATTTTTAT
1 TTTATTTATTTTT-TGTTTAA
*
12311633 TTTATTTAATTTTTGTTTAA
1 TTTATTTATTTTTTGTTTAA
*
12311653 TTTATTTCTTTT
1 TTTATTTATTTT
12311665 AATCTATTTT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
20 15 0.56
21 12 0.44
ACGTcount: A:0.19, C:0.02, G:0.02, T:0.77
Consensus pattern (20 bp):
TTTATTTATTTTTTGTTTAA
Found at i:12315434 original size:19 final size:21
Alignment explanation
Indices: 12315391--12315435 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
12315381 CTAAGTCCTC
12315391 AATTTTTAATTATTATTTACTT
1 AATTTTTAATTATTATTTAC-T
*
12315413 AATTTTTAGTTATT-TTTA-T
1 AATTTTTAATTATTATTTACT
12315432 AATT
1 AATT
12315436 AGTTTATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 5 0.23
21 4 0.18
22 13 0.59
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.64
Consensus pattern (21 bp):
AATTTTTAATTATTATTTACT
Found at i:12316612 original size:14 final size:14
Alignment explanation
Indices: 12316593--12316619 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
12316583 TTGGTTCTAA
12316593 TTTTAGTTAATTAG
1 TTTTAGTTAATTAG
12316607 TTTTAGTTAATTA
1 TTTTAGTTAATTA
12316620 ATTAATTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.00, G:0.11, T:0.59
Consensus pattern (14 bp):
TTTTAGTTAATTAG
Found at i:12319762 original size:28 final size:27
Alignment explanation
Indices: 12319729--12319783 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 27
12319719 TATATAAGCT
12319729 ATATATAGT-AAGTGTTTTAGAAATCGG
1 ATATAT-GTAAAGTGTTTTAGAAATCGG
12319756 NATATATGTAAAGTGTTTTAGAAATCGG
1 -ATATATGTAAAGTGTTTTAGAAATCGG
12319784 GAAATAAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
27 2 0.08
28 24 0.92
ACGTcount: A:0.36, C:0.04, G:0.22, T:0.36
Consensus pattern (27 bp):
ATATATGTAAAGTGTTTTAGAAATCGG
Found at i:12330580 original size:21 final size:23
Alignment explanation
Indices: 12330556--12330598 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
12330546 AATTTGGTCA
12330556 ACCAAT-G-TTCTTCCTTGTTTC
1 ACCAATAGCTTCTTCCTTGTTTC
12330577 ACCAATAAGCTTCTTCCTTGTT
1 ACCAAT-AGCTTCTTCCTTGTT
12330599 ATTTAGTTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 6 0.32
23 1 0.05
24 12 0.63
ACGTcount: A:0.19, C:0.28, G:0.09, T:0.44
Consensus pattern (23 bp):
ACCAATAGCTTCTTCCTTGTTTC
Found at i:12330801 original size:32 final size:32
Alignment explanation
Indices: 12330765--12330868 Score: 122
Period size: 32 Copynumber: 3.2 Consensus size: 32
12330755 GAAGCCAACA
*
12330765 GTTGAGCCATTGAAAAACCACTTTGGGTTTTG
1 GTTGAGCCTTTGAAAAACCACTTTGGGTTTTG
*
12330797 GTTGAG-CTTGTGAAAAACCA-TTGTGAAAGGTTGTG
1 GTTGAGCCTT-TGAAAAACCACTT-TG---GGTTTTG
*
12330832 GTTGAGCCTTTGAAAAATCACTTTGGGTTTTG
1 GTTGAGCCTTTGAAAAACCACTTTGGGTTTTG
12330864 GTTGA
1 GTTGA
12330869 TCCCGATAAA
Statistics
Matches: 61, Mismatches: 4, Indels: 14
0.77 0.05 0.18
Matches are distributed among these distances:
31 4 0.07
32 29 0.48
35 23 0.38
36 5 0.08
ACGTcount: A:0.25, C:0.12, G:0.28, T:0.36
Consensus pattern (32 bp):
GTTGAGCCTTTGAAAAACCACTTTGGGTTTTG
Found at i:12330880 original size:67 final size:67
Alignment explanation
Indices: 12330765--12330895 Score: 201
Period size: 67 Copynumber: 2.0 Consensus size: 67
12330755 GAAGCCAACA
**
12330765 GTTGAGCCATTGAAAAACCACTTTGGGTTTTGGTTGAGCTTGTGAAAAACCATTGTGAAAGGTTG
1 GTTGAGCCATTGAAAAACCACTTTGGGTTTTGGTTGAGCCCGTGAAAAACCATTGTGAAAGGTTG
12330830 TG
66 TG
* * *
12330832 GTTGAGCCTTTGAAAAATCACTTTGGGTTTTGGTTGATCCCGAT-AAAAACCATTGTGAAAGGTT
1 GTTGAGCCATTGAAAAACCACTTTGGGTTTTGGTTGAGCCCG-TGAAAAACCATTGTGAAAGGTT
12330896 TTGGCTAATC
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
67 57 0.98
68 1 0.02
ACGTcount: A:0.27, C:0.13, G:0.26, T:0.34
Consensus pattern (67 bp):
GTTGAGCCATTGAAAAACCACTTTGGGTTTTGGTTGAGCCCGTGAAAAACCATTGTGAAAGGTTG
TG
Found at i:12332791 original size:55 final size:54
Alignment explanation
Indices: 12332706--12332854 Score: 217
Period size: 55 Copynumber: 2.7 Consensus size: 54
12332696 TGATTTTGCT
* * **
12332706 TGTGCACTATGTGGGGGGATGCATATGAGCTGGGTGAGATGGAGTGTCCGGCTA
1 TGTGCACGATGTGGGGGGATGCAAATGAGCTGGGTGAGATGGAGTGTCCAACTA
* * *
12332760 TGTGCACGATGTGGGGGGTATGCACATGAGCTGGGTGAGTTGGGGTGTCCAACTA
1 TGTGCACGATGTGGGGGG-ATGCAAATGAGCTGGGTGAGATGGAGTGTCCAACTA
*
12332815 TGTGCACGATGTGGGGGGATGCAAATAAGCTGGGTGAGAT
1 TGTGCACGATGTGGGGGGATGCAAATGAGCTGGGTGAGAT
12332855 TGTGGTGTAT
Statistics
Matches: 85, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
54 36 0.42
55 49 0.58
ACGTcount: A:0.20, C:0.13, G:0.42, T:0.25
Consensus pattern (54 bp):
TGTGCACGATGTGGGGGGATGCAAATGAGCTGGGTGAGATGGAGTGTCCAACTA
Found at i:12334724 original size:42 final size:42
Alignment explanation
Indices: 12334651--12334757 Score: 142
Period size: 42 Copynumber: 2.5 Consensus size: 42
12334641 TCATCAGCTC
** *
12334651 ATGTGCACTCCCCACTAGCACATGGCTGGGTCATCATCGACTT
1 ATGTGCACT-CCCACTAGCACATAACCGGGTCATCATCGACTT
*
12334694 ATGTGCACTCCCACTAGCACATAACCGGGTCATCATCGGCTT
1 ATGTGCACTCCCACTAGCACATAACCGGGTCATCATCGACTT
* * *
12334736 ATGTACACTCCTACTTGCACAT
1 ATGTGCACTCCCACTAGCACAT
12334758 TGTCGGGTCC
Statistics
Matches: 57, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
42 48 0.84
43 9 0.16
ACGTcount: A:0.23, C:0.33, G:0.18, T:0.26
Consensus pattern (42 bp):
ATGTGCACTCCCACTAGCACATAACCGGGTCATCATCGACTT
Found at i:12335543 original size:3 final size:3
Alignment explanation
Indices: 12335535--12335559 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
12335525 AACGTGAAAG
12335535 AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA A
12335560 AAGCTACTAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:12345689 original size:26 final size:26
Alignment explanation
Indices: 12345629--12345690 Score: 106
Period size: 26 Copynumber: 2.4 Consensus size: 26
12345619 ACCATATACC
* *
12345629 CATCATCAACATGCACACCATCGCAT
1 CATCATCATCATGCACACCATCCCAT
12345655 CATCATCATCATGCACACCATCCCAT
1 CATCATCATCATGCACACCATCCCAT
12345681 CATCATCATC
1 CATCATCATC
12345691 TCATATGCAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.32, C:0.40, G:0.05, T:0.23
Consensus pattern (26 bp):
CATCATCATCATGCACACCATCCCAT
Found at i:12345824 original size:42 final size:42
Alignment explanation
Indices: 12345715--12345852 Score: 181
Period size: 42 Copynumber: 3.3 Consensus size: 42
12345705 TTATGCGCAT
* *
12345715 ATAGCC-GAGTCAACAACGACTTATGTGCACTCC-CACTCACAC
1 ATAGCCAG-GTCAGCAACGGCTTATGTGCACTCCTC-CTCACAC
**
12345757 ATAGTCGGGGTCAGCAACGGCTTATGTGCACTCCTCCTCACAC
1 ATAG-CCAGGTCAGCAACGGCTTATGTGCACTCCTCCTCACAC
* *
12345800 ATAGCCAGGTCAGCAACGGCTTATGTGCACTCCTACTCGCAC
1 ATAGCCAGGTCAGCAACGGCTTATGTGCACTCCTCCTCACAC
12345842 ATAGCCAGGTC
1 ATAGCCAGGTC
12345853 CAAATCAACA
Statistics
Matches: 86, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
42 49 0.57
43 35 0.41
44 2 0.02
ACGTcount: A:0.25, C:0.33, G:0.20, T:0.21
Consensus pattern (42 bp):
ATAGCCAGGTCAGCAACGGCTTATGTGCACTCCTCCTCACAC
Found at i:12352177 original size:5 final size:5
Alignment explanation
Indices: 12352167--12352214 Score: 71
Period size: 5 Copynumber: 9.8 Consensus size: 5
12352157 TATATATATA
* *
12352167 TTTTC TTTTC TTTTC GTTTC TTTTC TTTTC TTTTA TTTTC -TTTC TTTT
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTT
12352215 TTTCTCTTCC
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
4 4 0.11
5 34 0.89
ACGTcount: A:0.02, C:0.17, G:0.02, T:0.79
Consensus pattern (5 bp):
TTTTC
Found at i:12352521 original size:35 final size:35
Alignment explanation
Indices: 12352482--12352561 Score: 92
Period size: 35 Copynumber: 2.3 Consensus size: 35
12352472 CAAAGCTACA
12352482 AAAATTAGCAACCAAAA-TCGCACCTTTCAGCCATT-
1 AAAATTAGCAACCAAAACT-GCACCTTTCAGCC-TTC
* * *
12352517 AAAATCAGTAACCAAAACTGCACTTTTCAGCCTTC
1 AAAATTAGCAACCAAAACTGCACCTTTCAGCCTTC
*
12352552 AAAAATAGCA
1 AAAATTAGCA
12352562 GTTAAAGCCT
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
34 2 0.05
35 34 0.92
36 1 0.03
ACGTcount: A:0.42, C:0.26, G:0.09, T:0.23
Consensus pattern (35 bp):
AAAATTAGCAACCAAAACTGCACCTTTCAGCCTTC
Found at i:12352742 original size:19 final size:19
Alignment explanation
Indices: 12352720--12352760 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
12352710 GCTACTTTTC
12352720 TCTTTT-TTCTTTCCTTTGT
1 TCTTTTGTT-TTTCCTTTGT
*
12352739 TCTTTTGTTTTTCTTTTGT
1 TCTTTTGTTTTTCCTTTGT
12352758 TCT
1 TCT
12352761 CCTTCACAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 18 0.90
20 2 0.10
ACGTcount: A:0.00, C:0.17, G:0.07, T:0.76
Consensus pattern (19 bp):
TCTTTTGTTTTTCCTTTGT
Found at i:12352978 original size:2 final size:2
Alignment explanation
Indices: 12352971--12352996 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
12352961 GGTCTTCTTT
12352971 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
12352997 CTTATATTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:12360029 original size:22 final size:21
Alignment explanation
Indices: 12359987--12360029 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 21
12359977 TTTAAAACAA
* *
12359987 CTTTAAAGCAAAAACTTTGAT
1 CTTTAAACCAAAAACTCTGAT
*
12360008 CTTTAAAACCAAAAGCTCTGAT
1 CTTT-AAACCAAAAACTCTGAT
12360030 ACCAATGTAA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (21 bp):
CTTTAAACCAAAAACTCTGAT
Found at i:12362093 original size:5 final size:5
Alignment explanation
Indices: 12362083--12362131 Score: 80
Period size: 5 Copynumber: 9.6 Consensus size: 5
12362073 TATATATATA
*
12362083 TTTCT TTTCT TTTCT TTTCT CTTCT TTTCT TTTCT TTTCT TTCTCT TTT
1 TTTCT TTTCT TTTCT TTTCT TTTCT TTTCT TTTCT TTTCT TT-TCT TTT
12362132 TCTCTTCCTC
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
5 36 0.88
6 5 0.12
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (5 bp):
TTTCT
Found at i:12362107 original size:15 final size:15
Alignment explanation
Indices: 12362083--12362138 Score: 76
Period size: 15 Copynumber: 3.6 Consensus size: 15
12362073 TATATATATA
*
12362083 TTTCTTTTCTTTTCT
1 TTTCTCTTCTTTTCT
12362098 TTTCTCTTCTTTTCT
1 TTTCTCTTCTTTTCT
*
12362113 TTTCTTTTCTTTCTCTT
1 TTTCTCTTCTTT-TC-T
12362130 TTTCTCTTC
1 TTTCTCTTC
12362139 CTCCTCTCTC
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
15 25 0.69
16 2 0.06
17 9 0.25
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (15 bp):
TTTCTCTTCTTTTCT
Found at i:12362436 original size:35 final size:35
Alignment explanation
Indices: 12362416--12362509 Score: 145
Period size: 35 Copynumber: 2.7 Consensus size: 35
12362406 AACCAAAATC
12362416 GCACCTTTTAGCCTTTAAAATCAGTAAACAAAACT
1 GCACCTTTTAGCCTTTAAAATCAGTAAACAAAACT
12362451 GCA-CTTTTCAGCCTTTAAAATCAGTAAACAAAACT
1 GCACCTTTT-AGCCTTTAAAATCAGTAAACAAAACT
* * *
12362486 GTACCTTTCAGCCTTAAAAATCAG
1 GCACCTTTTAGCCTTTAAAATCAG
12362510 CAGTTAAAGC
Statistics
Matches: 54, Mismatches: 3, Indels: 4
0.89 0.05 0.07
Matches are distributed among these distances:
34 5 0.09
35 45 0.83
36 4 0.07
ACGTcount: A:0.38, C:0.23, G:0.10, T:0.29
Consensus pattern (35 bp):
GCACCTTTTAGCCTTTAAAATCAGTAAACAAAACT
Found at i:12362540 original size:22 final size:22
Alignment explanation
Indices: 12362495--12362541 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
12362485 TGTACCTTTC
* **
12362495 AGCCTTAAAAATCAGCAGTTAA
1 AGCCTCAAAAATCAGCAGCCAA
*
12362517 AGCCTCAAAAATCAGTAGCCAA
1 AGCCTCAAAAATCAGCAGCCAA
12362539 AGC
1 AGC
12362542 TGTTCATTCT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.45, C:0.23, G:0.15, T:0.17
Consensus pattern (22 bp):
AGCCTCAAAAATCAGCAGCCAA
Found at i:12365330 original size:38 final size:39
Alignment explanation
Indices: 12365288--12365386 Score: 121
Period size: 38 Copynumber: 2.5 Consensus size: 39
12365278 AGAGTGCCCG
* *
12365288 TGTGCACAATGTGGGGGGATGCACACGATGGC-ACTGAC-
1 TGTGCACGATGTGGGGGGATGCACACGATGACTACT-ACA
* * *
12365326 TGTGCATGATGTGGGGGCATGCACACGATGACTCCTACTA
1 TGTGCACGATGTGGGGGGATGCACACGATGACTACTAC-A
12365366 TGTGCACGATGTGGGGGGATG
1 TGTGCACGATGTGGGGGGATG
12365387 TACATGAGTC
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
38 30 0.59
39 2 0.04
40 19 0.37
ACGTcount: A:0.21, C:0.19, G:0.37, T:0.22
Consensus pattern (39 bp):
TGTGCACGATGTGGGGGGATGCACACGATGACTACTACA
Found at i:12368560 original size:54 final size:54
Alignment explanation
Indices: 12368447--12368623 Score: 246
Period size: 54 Copynumber: 3.2 Consensus size: 54
12368437 GGGATGCACA
* * * * * * *
12368447 TGAGCTGGGGTGTCTGGCTATGTGCATGATATGGGGGGGATACACATGAGCTGCG
1 TGAGATGGGGTGTCCGACTATGTGCACGATGT-GGGGGGATGCACATGAGCTGGG
12368502 TGAGATGGGGTGTCCGACTATGTGCACGATGTGGGGGGATGCACATGAGCTGGG
1 TGAGATGGGGTGTCCGACTATGTGCACGATGTGGGGGGATGCACATGAGCTGGG
* * *
12368556 TGAGACGTGGTGTCCGACTATGTGCACGATGTGGGGGGATGCACATGAGTTGGG
1 TGAGATGGGGTGTCCGACTATGTGCACGATGTGGGGGGATGCACATGAGCTGGG
12368610 TGAGATGGTGGTGT
1 TGAGATGG-GGTGT
12368624 ATGTGCTTAT
Statistics
Matches: 109, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
54 77 0.71
55 32 0.29
ACGTcount: A:0.18, C:0.14, G:0.44, T:0.25
Consensus pattern (54 bp):
TGAGATGGGGTGTCCGACTATGTGCACGATGTGGGGGGATGCACATGAGCTGGG
Found at i:12368882 original size:172 final size:174
Alignment explanation
Indices: 12368594--12368940 Score: 662
Period size: 172 Copynumber: 2.0 Consensus size: 174
12368584 ATGTGGGGGG
12368594 ATGCACATGAGTTGGGTGAGATGGTGGTGTATGTGCTTATATATATATATATTTACTATATAGAG
1 ATGCACATGAGTTGGGTGAGATGGTGGTGTATGTGCTTATATATATATATATTTACTATATAGAG
12368659 CTGTTTGTATTTAATATGTGATTACATTGACTGTTGAAAACTTGAGATTGTCAATGTGTTCAATT
66 CTGTTTGTATTTAATATGTGATTACATTGACTGTTGAAAACTTGAGATTGTCAATGTGTTCAATT
12368724 TAATGTGCAATGTGGCATGAGTGGACTTTTTCGGTGGCAGTGAA
131 TAATGTGCAATGTGGCATGAGTGGACTTTTTCGGTGGCAGTGAA
12368768 ATGCACATGAGTTGGGTGAGATGGTGGTGTATGTGC-T-TATATATATATATTTACTATATAGAG
1 ATGCACATGAGTTGGGTGAGATGGTGGTGTATGTGCTTATATATATATATATTTACTATATAGAG
*
12368831 CTGTTTGTATTTAATATGTGATTGCATTGACTGTTGAAAACTTGAGATTGTCAATGTGTTCAATT
66 CTGTTTGTATTTAATATGTGATTACATTGACTGTTGAAAACTTGAGATTGTCAATGTGTTCAATT
*
12368896 TAATGTGCAATGTGGCATGAGTGGATTTTTTCGGTGGCAGTGAA
131 TAATGTGCAATGTGGCATGAGTGGACTTTTTCGGTGGCAGTGAA
12368940 A
1 A
12368941 GCCCCTTGGA
Statistics
Matches: 171, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
172 134 0.78
173 1 0.01
174 36 0.21
ACGTcount: A:0.27, C:0.08, G:0.26, T:0.39
Consensus pattern (174 bp):
ATGCACATGAGTTGGGTGAGATGGTGGTGTATGTGCTTATATATATATATATTTACTATATAGAG
CTGTTTGTATTTAATATGTGATTACATTGACTGTTGAAAACTTGAGATTGTCAATGTGTTCAATT
TAATGTGCAATGTGGCATGAGTGGACTTTTTCGGTGGCAGTGAA
Found at i:12375504 original size:19 final size:19
Alignment explanation
Indices: 12375480--12375521 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
12375470 AAGTTTTCTT
* *
12375480 AATTAGTATCTAGCTTTAA
1 AATTAGCATCAAGCTTTAA
*
12375499 AATTAGCATCAAGCTTTAG
1 AATTAGCATCAAGCTTTAA
12375518 AATT
1 AATT
12375522 GTCTCTTCTC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (19 bp):
AATTAGCATCAAGCTTTAA
Found at i:12376631 original size:29 final size:29
Alignment explanation
Indices: 12376584--12376640 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 29
12376574 GGATATTCAA
* *
12376584 TATATCTTGCTTAGCTACTATGGATATTG
1 TATATCTTGCTTAACTACTATAGATATTG
* * *
12376613 TATATCTTGTTTAATTACTGTAGATATT
1 TATATCTTGCTTAACTACTATAGATATT
12376641 ATAAATATTT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.26, C:0.11, G:0.14, T:0.49
Consensus pattern (29 bp):
TATATCTTGCTTAACTACTATAGATATTG
Found at i:12386262 original size:21 final size:21
Alignment explanation
Indices: 12386238--12386280 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
12386228 TTGATTTCAA
*
12386238 ATGAAGGCATCAGTATTTGTC
1 ATGAAGGCATCAATATTTGTC
* *
12386259 ATGAATGCATCAATCTTTGTC
1 ATGAAGGCATCAATATTTGTC
12386280 A
1 A
12386281 GGAATTGCAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35
Consensus pattern (21 bp):
ATGAAGGCATCAATATTTGTC
Found at i:12386285 original size:21 final size:22
Alignment explanation
Indices: 12386244--12386290 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 22
12386234 TCAAATGAAG
* *
12386244 GCATCAGTATTTGTCATGAA-T
1 GCATCAATATTTGTCAGGAATT
*
12386265 GCATCAATCTTTGTCAGGAATT
1 GCATCAATATTTGTCAGGAATT
12386287 GCAT
1 GCAT
12386291 GAACGTATCC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 17 0.77
22 5 0.23
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (22 bp):
GCATCAATATTTGTCAGGAATT
Found at i:12394707 original size:43 final size:43
Alignment explanation
Indices: 12394626--12394750 Score: 146
Period size: 43 Copynumber: 2.9 Consensus size: 43
12394616 TATTGACTTG
*
12394626 GTTATGTGCGAGTAGGGAGTGCGCATAAGCC-GAG-GATGACCTA
1 GTTATGTGCGAGTAGGGAGTGCGCATAA-CCTG-GTGATGACCCA
*
12394669 GTTATGTACGAGTAGGGAGTGCGCATAACCTGGTGATGACCCA
1 GTTATGTGCGAGTAGGGAGTGCGCATAACCTGGTGATGACCCA
** * * * *
12394712 GCCATGTGCGAGAAGGGAGTTCGCATGAGCTGGTGATGA
1 GTTATGTGCGAGTAGGGAGTGCGCATAACCTGGTGATGA
12394751 TGATGATGGG
Statistics
Matches: 71, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
42 3 0.04
43 68 0.96
ACGTcount: A:0.25, C:0.17, G:0.37, T:0.22
Consensus pattern (43 bp):
GTTATGTGCGAGTAGGGAGTGCGCATAACCTGGTGATGACCCA
Found at i:12395203 original size:60 final size:60
Alignment explanation
Indices: 12395105--12395273 Score: 203
Period size: 60 Copynumber: 2.8 Consensus size: 60
12395095 CATAGTAGCT
* *
12395105 TTTCACTGCAGCAAAATTCATTCTCGCTGCAGCAAGAAACTTTCTGTTTCTGGATTACAA
1 TTTCACTGCAGCAAAATTCATTCTCGCTGCAGCGAGAAACTTTCTGTTTCTGGATCACAA
* * * * * * *
12395165 TTTCGCTGCAGCAACATTCATTCTTGCTGTAGCGAGAAACATTCTATTTCTGGGTCACAA
1 TTTCACTGCAGCAAAATTCATTCTCGCTGCAGCGAGAAACTTTCTGTTTCTGGATCACAA
* * * * * *
12395225 TTTCACTGCAGCGAGATTCAATCTCGTTGCAGCGAAAAACTTTTTGTTT
1 TTTCACTGCAGCAAAATTCATTCTCGCTGCAGCGAGAAACTTTCTGTTT
12395274 TGGTCTCCTA
Statistics
Matches: 89, Mismatches: 20, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
60 89 1.00
ACGTcount: A:0.26, C:0.22, G:0.17, T:0.34
Consensus pattern (60 bp):
TTTCACTGCAGCAAAATTCATTCTCGCTGCAGCGAGAAACTTTCTGTTTCTGGATCACAA
Found at i:12401148 original size:139 final size:139
Alignment explanation
Indices: 12400981--12401250 Score: 414
Period size: 139 Copynumber: 1.9 Consensus size: 139
12400971 TGTCAATTAA
* * * * * *
12400981 TAGTATTTAGTTACTAAATATTACTGAATTGTTACTTATTATCTGCATTGATTTTACTATATATG
1 TAGTATTTAGTTACCAAATATTACTGAATTGCTACTTACTATCTGCATTCATTCTACTATATATA
*
12401046 TTTGACTAAATAGTAGATAGAAATTAGCCGGTCTACAGAGTTAGAAAATAAAATGATTTGAAATA
66 TTTGACTAAATAGTAGATAGAAATTAGCCGGTCTACAAAGTTAGAAAATAAAATGATTTGAAATA
12401111 TATCTGTTT
131 TATCTGTTT
* * * *
12401120 TAGTATTTAGTTACCAAATATTATTGAATTGCTACTTACTGTCTGTATTCATTCTACTATATCTA
1 TAGTATTTAGTTACCAAATATTACTGAATTGCTACTTACTATCTGCATTCATTCTACTATATATA
* * *
12401185 TTTGACTAAATAGTAGATAGAAATTAGCCGGTTTGCAAAGTTGGAAAATAAAATGATTTGAAATA
66 TTTGACTAAATAGTAGATAGAAATTAGCCGGTCTACAAAGTTAGAAAATAAAATGATTTGAAATA
12401250 T
131 T
12401251 CATGCATATA
Statistics
Matches: 117, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
139 117 1.00
ACGTcount: A:0.36, C:0.10, G:0.14, T:0.40
Consensus pattern (139 bp):
TAGTATTTAGTTACCAAATATTACTGAATTGCTACTTACTATCTGCATTCATTCTACTATATATA
TTTGACTAAATAGTAGATAGAAATTAGCCGGTCTACAAAGTTAGAAAATAAAATGATTTGAAATA
TATCTGTTT
Found at i:12406968 original size:2 final size:2
Alignment explanation
Indices: 12406961--12406985 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
12406951 CAACATTATT
12406961 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
12406986 CAACATAATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:12415378 original size:42 final size:42
Alignment explanation
Indices: 12415281--12415406 Score: 137
Period size: 42 Copynumber: 3.0 Consensus size: 42
12415271 TGTTGATGTG
* *
12415281 GACCCAGCTATGTGCAAGTAAGAGTGTACATAAGCCGATGAT
1 GACCCAGCTATGTGCAAGTGAGAGTGCACATAAGCCGATGAT
* * * *
12415323 GA-CCTGACTATGTGCGAGTGAGAGTGCGCATAAGTCGATGAT
1 GACCCAG-CTATGTGCAAGTGAGAGTGCACATAAGCCGATGAT
* * * *
12415365 GACCCAGCCATGTGCTAGTGGAGAGTGCACATGAGCTGATGA
1 GACCCAGCTATGTGCAAGT-GAGAGTGCACATAAGCCGATGA
12415407 CGATGGGAGA
Statistics
Matches: 68, Mismatches: 13, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
41 3 0.04
42 44 0.65
43 21 0.31
ACGTcount: A:0.29, C:0.19, G:0.31, T:0.21
Consensus pattern (42 bp):
GACCCAGCTATGTGCAAGTGAGAGTGCACATAAGCCGATGAT
Found at i:12420780 original size:42 final size:42
Alignment explanation
Indices: 12420691--12420789 Score: 110
Period size: 42 Copynumber: 2.4 Consensus size: 42
12420681 AACCACATCA
* * *
12420691 CACATAGCTGGGTCAGCACAACTCATGTGCACTATAACATCG
1 CACATGGCTGGGTCAGCACAACTCATATGCACTATAACACCG
* * *
12420733 CACATGGCTGGGTCAGCACAGCTCATATGCATTCCT-ACACCG
1 CACATGGCTGGGTCAGCACAACTCATATGCACT-ATAACACCG
* *
12420775 TACATGGTTGGGTCA
1 CACATGGCTGGGTCA
12420790 TAATTATCAC
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
42 47 0.98
43 1 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (42 bp):
CACATGGCTGGGTCAGCACAACTCATATGCACTATAACACCG
Found at i:12424133 original size:42 final size:42
Alignment explanation
Indices: 12424073--12424166 Score: 127
Period size: 42 Copynumber: 2.3 Consensus size: 42
12424063 CACATGGCTG
* * * * *
12424073 GGTCAGCA-CGGCTTATGCACACTCTTACTCGCATATAGCTA
1 GGTCATCATCGGCGTATGCACACTCCTACTCGCACATAGCCA
*
12424114 GGTCATCATCGGCGTATGCACACTCCTACTCGCACATAGCCG
1 GGTCATCATCGGCGTATGCACACTCCTACTCGCACATAGCCA
12424156 GGTCATCATCG
1 GGTCATCATCG
12424167 TTACACAACA
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
41 7 0.15
42 39 0.85
ACGTcount: A:0.22, C:0.32, G:0.21, T:0.24
Consensus pattern (42 bp):
GGTCATCATCGGCGTATGCACACTCCTACTCGCACATAGCCA
Found at i:12425005 original size:19 final size:19
Alignment explanation
Indices: 12424957--12425006 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
12424947 GATAGAAGGA
12424957 GGAAGAAGAAGAAGCTGCT
1 GGAAGAAGAAGAAGCTGCT
* *
12424976 AGAA-ATTGAAGAAGCTGCT
1 GGAAGA-AGAAGAAGCTGCT
*
12424995 GGAAGGAGAAGA
1 GGAAGAAGAAGA
12425007 TATTTATAGC
Statistics
Matches: 24, Mismatches: 5, Indels: 4
0.73 0.15 0.12
Matches are distributed among these distances:
18 1 0.04
19 23 0.96
ACGTcount: A:0.44, C:0.08, G:0.36, T:0.12
Consensus pattern (19 bp):
GGAAGAAGAAGAAGCTGCT
Found at i:12430300 original size:42 final size:42
Alignment explanation
Indices: 12430248--12430454 Score: 215
Period size: 42 Copynumber: 4.9 Consensus size: 42
12430238 AACTTTGTCT
* * * *
12430248 CAGCTTATGTGCACT-ACCACATCGCACATAG-TCGGGTCTGCA
1 CAGCTCATGTGCACTCA-CACACCGCACATGGCT-GGGTCAGCA
* *
12430290 CAGCTCATGTGCACTCATACACCGCACATGGCTGGGTCAACA
1 CAGCTCATGTGCACTCACACACCGCACATGGCTGGGTCAGCA
** *
12430332 CAGCTCATGTGCACTCGTACACCGCACATGGCTGGGTCAGAA
1 CAGCTCATGTGCACTCACACACCGCACATGGCTGGGTCAGCA
* * *
12430374 TAGCTCATGTGCACTC-CTACACCACACATGGCTGGGTCAGTA
1 CAGCTCATGTGCACTCAC-ACACCGCACATGGCTGGGTCAGCA
* * *
12430416 CAGCTCATGTGCAATC-CTACACCGTACATGGCTAGGTCA
1 CAGCTCATGTGCACTCAC-ACACCGCACATGGCTGGGTCA
12430455 TAATTATCAC
Statistics
Matches: 144, Mismatches: 18, Indels: 6
0.86 0.11 0.04
Matches are distributed among these distances:
42 142 0.99
43 2 0.01
ACGTcount: A:0.25, C:0.31, G:0.22, T:0.22
Consensus pattern (42 bp):
CAGCTCATGTGCACTCACACACCGCACATGGCTGGGTCAGCA
Found at i:12430332 original size:21 final size:21
Alignment explanation
Indices: 12430308--12430370 Score: 51
Period size: 21 Copynumber: 3.0 Consensus size: 21
12430298 GTGCACTCAT
12430308 ACACCGCACATGGCTGGGTCA
1 ACACCGCACATGGCTGGGTCA
* * *
12430329 ACACAGCTCATGTGCACT-CGT--
1 ACACCGCACATG-G--CTGGGTCA
12430350 ACACCGCACATGGCTGGGTCA
1 ACACCGCACATGGCTGGGTCA
12430371 GAATAGCTCA
Statistics
Matches: 30, Mismatches: 6, Indels: 12
0.62 0.12 0.25
Matches are distributed among these distances:
18 2 0.07
19 2 0.07
20 1 0.03
21 20 0.67
22 1 0.03
23 2 0.07
24 2 0.07
ACGTcount: A:0.24, C:0.33, G:0.25, T:0.17
Consensus pattern (21 bp):
ACACCGCACATGGCTGGGTCA
Found at i:12430389 original size:84 final size:84
Alignment explanation
Indices: 12430291--12430454 Score: 256
Period size: 84 Copynumber: 2.0 Consensus size: 84
12430281 GGGTCTGCAC
* * *
12430291 AGCTCATGTGCACTCATACACCGCACATGGCTGGGTCAACACAGCTCATGTGCACTCGTACACCG
1 AGCTCATGTGCACTCATACACCACACATGGCTGGGTCAACACAGCTCATGTGCAATCCTACACCG
*
12430356 CACATGGCTGGGTCAGAAT
66 CACATGGCTAGGTCAGAAT
* **
12430375 AGCTCATGTGCACTCCTACACCACACATGGCTGGGTCAGTACAGCTCATGTGCAATCCTACACCG
1 AGCTCATGTGCACTCATACACCACACATGGCTGGGTCAACACAGCTCATGTGCAATCCTACACCG
*
12430440 TACATGGCTAGGTCA
66 CACATGGCTAGGTCA
12430455 TAATTATCAC
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
84 72 1.00
ACGTcount: A:0.25, C:0.31, G:0.23, T:0.21
Consensus pattern (84 bp):
AGCTCATGTGCACTCATACACCACACATGGCTGGGTCAACACAGCTCATGTGCAATCCTACACCG
CACATGGCTAGGTCAGAAT
Found at i:12431079 original size:23 final size:23
Alignment explanation
Indices: 12431028--12431080 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
12431018 AGCCTTTCTA
*
12431028 ATATGATTTCCACCCAAATCCATC
1 ATAT-ATTTCCACACAAATCCATC
*
12431052 TTATATTTCCACACATAATCCA-C
1 ATATATTTCCACACA-AATCCATC
12431075 ATATAT
1 ATATAT
12431081 GGCAACAACA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
23 16 0.64
24 9 0.36
ACGTcount: A:0.36, C:0.28, G:0.02, T:0.34
Consensus pattern (23 bp):
ATATATTTCCACACAAATCCATC
Found at i:12433115 original size:38 final size:39
Alignment explanation
Indices: 12433073--12433160 Score: 106
Period size: 40 Copynumber: 2.3 Consensus size: 39
12433063 CAAGAGGAGC
*
12433073 AAGCACAACC-TCACAATGTCACTACCTTTTCAAGGTTA
1 AAGCACAACCTTCACAAAGTCACTACCTTTTCAAGGTTA
*** *
12433111 AAGCACAACCTTTCACAAAGTTTTTTCCTTTTCAAGGTTA
1 AAGCACAACC-TTCACAAAGTCACTACCTTTTCAAGGTTA
*
12433151 AAGTACAACC
1 AAGCACAACC
12433161 CCTCTAACTT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
38 10 0.24
40 32 0.76
ACGTcount: A:0.34, C:0.26, G:0.10, T:0.30
Consensus pattern (39 bp):
AAGCACAACCTTCACAAAGTCACTACCTTTTCAAGGTTA
Found at i:12433717 original size:161 final size:161
Alignment explanation
Indices: 12433425--12433724 Score: 426
Period size: 161 Copynumber: 1.9 Consensus size: 161
12433415 AGCTCACTAC
* * *
12433425 TAGAATAAAGGAAGGATTTTTCTATTTCAGCTATTTCAAAAATATTCTTCTCTTGTTTTCTTTGT
1 TAGAATAAAGGAAGGATTTTTCTATTTCAACTATTTCAAAAATATTCTTCTCTTGTTTTCCTTAT
* * *
12433490 CTTTTTCCATCTTTTCTAATTCTTTTTTCTCTTCTCCTTCTCTCTTTCTGATGTCCTTTGGGCAA
66 CTTTTTCCATCTTTACTAATTCTTTTTTCTCTTCTCCTTCTCTCTTTCTGATGCCCTTTAGGCAA
12433555 GTATTTATAAGCCTGAACTTTTTCTACTCGT
131 GTATTTATAAGCCTGAACTTTTTCTACTCGT
* * * * * *
12433586 TAGAATAAGGGAATGATTTTTCTGTTTCAACTCTTTCAAAAATTTTCTTTTCTTGTTTTCCTTAT
1 TAGAATAAAGGAAGGATTTTTCTATTTCAACTATTTCAAAAATATTCTTCTCTTGTTTTCCTTAT
* *
12433651 CTTTTT-CAT-TATCTACTGATTC-TTTTTCTCTTCTCCTTCTCTCTTTACTTATGCCCTTTAGG
66 CTTTTTCCATCT-T-TACTAATTCTTTTTTCTCTTCTCCTTCTCTCTTT-CTGATGCCCTTTAGG
12433713 CAAGTATTTATA
128 CAAGTATTTATA
12433725 GGTATGAACG
Statistics
Matches: 122, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
159 1 0.01
160 28 0.23
161 93 0.76
ACGTcount: A:0.20, C:0.20, G:0.10, T:0.51
Consensus pattern (161 bp):
TAGAATAAAGGAAGGATTTTTCTATTTCAACTATTTCAAAAATATTCTTCTCTTGTTTTCCTTAT
CTTTTTCCATCTTTACTAATTCTTTTTTCTCTTCTCCTTCTCTCTTTCTGATGCCCTTTAGGCAA
GTATTTATAAGCCTGAACTTTTTCTACTCGT
Found at i:12437189 original size:43 final size:42
Alignment explanation
Indices: 12437142--12437253 Score: 120
Period size: 43 Copynumber: 2.6 Consensus size: 42
12437132 GTTCGATGTG
*
12437142 GGAGTGCACATGAGCTGATGATGACCTGGCTATGTG-TGAGTAA
1 GGAGTGCACATGAGCTGATGATGACCTGACTATGTGCT-AGT-A
* **
12437185 GGAGTGCGCA-GAAGCCAATGATGACCTGACTATGTGCTAGTA
1 GGAGTGCACATG-AGCTGATGATGACCTGACTATGTGCTAGTA
* *
12437227 GAGAGTGCACATAAACTGATGATGACC
1 G-GAGTGCACATGAGCTGATGATGACC
12437254 CAGCTATGAG
Statistics
Matches: 56, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
42 3 0.05
43 52 0.93
44 1 0.02
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.22
Consensus pattern (42 bp):
GGAGTGCACATGAGCTGATGATGACCTGACTATGTGCTAGTA
Found at i:12437261 original size:43 final size:43
Alignment explanation
Indices: 12437116--12437261 Score: 111
Period size: 43 Copynumber: 3.4 Consensus size: 43
12437106 TTGTGTGATA
* * * * *
12437116 ATGATGACCCAGCTCTGTTCGATGT-GGGAGTGCACATGAGCTG
1 ATGATGACCCAGCTATGTGCTA-GTAGAGAGTGCACATAAGCTG
** * * **
12437159 ATGATGACCTGGCTATGTG-TGAGTA-AGGAGTGCGCAGAAGCCA
1 ATGATGACCCAGCTATGTGCT-AGTAGA-GAGTGCACATAAGCTG
* *
12437202 ATGATGA-CCTGACTATGTGCTAGTAGAGAGTGCACATAAACTG
1 ATGATGACCCAG-CTATGTGCTAGTAGAGAGTGCACATAAGCTG
12437245 ATGATGACCCAGCTATG
1 ATGATGACCCAGCTATG
12437262 AGAATGCATT
Statistics
Matches: 77, Mismatches: 19, Indels: 14
0.70 0.17 0.13
Matches are distributed among these distances:
42 4 0.05
43 68 0.88
44 5 0.06
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.24
Consensus pattern (43 bp):
ATGATGACCCAGCTATGTGCTAGTAGAGAGTGCACATAAGCTG
Found at i:12440700 original size:30 final size:29
Alignment explanation
Indices: 12440666--12440746 Score: 108
Period size: 30 Copynumber: 2.7 Consensus size: 29
12440656 TAATAGCCAA
*
12440666 TTATACCTCCATTCAAAAGGTAGTTGTCAG
1 TTATACCTCCATT-AAAAGGTAGTTATCAG
* **
12440696 TTATACCTCCATTGAAAAGATAGTTATTGG
1 TTATACCTCCATT-AAAAGGTAGTTATCAG
12440726 TTATACCTCCATTAAAAGGTA
1 TTATACCTCCATTAAAAGGTA
12440747 ATATGGTTAA
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
29 7 0.16
30 38 0.84
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35
Consensus pattern (29 bp):
TTATACCTCCATTAAAAGGTAGTTATCAG
Found at i:12441999 original size:22 final size:24
Alignment explanation
Indices: 12441974--12442026 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 24
12441964 TAATATTGAC
*
12441974 CATGAAC-T-CTTGATATCATGTT
1 CATGAACTTACTTGATATCATGAT
*
12441996 CATGAACTTCACTTGATATCTTGAT
1 CATGAACTT-ACTTGATATCATGAT
12442021 CATGAA
1 CATGAA
12442027 GATATCCTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 7 0.27
23 1 0.04
25 18 0.69
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.38
Consensus pattern (24 bp):
CATGAACTTACTTGATATCATGAT
Found at i:12442168 original size:148 final size:148
Alignment explanation
Indices: 12441900--12442174 Score: 406
Period size: 148 Copynumber: 1.9 Consensus size: 148
12441890 ATCTTCGAGA
** ** *
12441900 CTTGGTGACTTAATCTCGATCATGAACTATACTTGATATCTTCGCTTCAAAGGTCTTCACGACTT
1 CTTGGTGACAAAATCTCGATCACAAACTATACTTGATATCTTCCCTTCAAAGGTCTTCACGACTT
* **
12441965 AATATTGACCATGAACTCTTGATATCATGTTCATGAACTTCACTTGATATCTTGATCATGAAGAT
66 AATATTGACCATGAACTCTTGATATCATGATCACAAACTTCACTTGATATCTTGATCATGAAGAT
12442030 ATCCTTCGCTTTGAGAGT
131 ATCCTTCGCTTTGAGAGT
* *
12442048 CTTGGTGACAAAATCTTGATCACAAACTATACTTGATATCTTCCCTTCAAGGGTCTTCACGACTT
1 CTTGGTGACAAAATCTCGATCACAAACTATACTTGATATCTTCCCTTCAAAGGTCTTCACGACTT
* * * ** *
12442113 AATCTTGATCATGAACTCTTGATATCGTGATCACAAACTTTGCTTGATATCTTGATCTTGAA
66 AATATTGACCATGAACTCTTGATATCATGATCACAAACTTCACTTGATATCTTGATCATGAA
12442175 TTTCGCTGCT
Statistics
Matches: 111, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
148 111 1.00
ACGTcount: A:0.28, C:0.21, G:0.15, T:0.37
Consensus pattern (148 bp):
CTTGGTGACAAAATCTCGATCACAAACTATACTTGATATCTTCCCTTCAAAGGTCTTCACGACTT
AATATTGACCATGAACTCTTGATATCATGATCACAAACTTCACTTGATATCTTGATCATGAAGAT
ATCCTTCGCTTTGAGAGT
Found at i:12443817 original size:36 final size:36
Alignment explanation
Indices: 12443760--12443932 Score: 132
Period size: 36 Copynumber: 5.0 Consensus size: 36
12443750 TGCACACAAT
* * * *
12443760 TTGTTGAT-CTTTAGAGAGTGCTCTTTCTAATAGCAG
1 TTGTTGATCCTTGA-AGGGTGCTCTTTATAATAGCAC
* *
12443796 TTGTTGATCCTTGAAGGGTGCTCTTGATAATAACAC
1 TTGTTGATCCTTGAAGGGTGCTCTTTATAATAGCAC
* * * * *
12443832 TTGTTGATCATTG-GGGGTGCTC--TA-CACA--AT
1 TTGTTGATCCTTGAAGGGTGCTCTTTATAATAGCAC
*
12443862 TTGTT-ATCCTT-AGAGAGTGCTCTTTATAATAGCAC
1 TTGTTGATCCTTGA-AGGGTGCTCTTTATAATAGCAC
*
12443897 TTGTTGATCCTTG-GGGGATGCTCTTTATAATAGCAC
1 TTGTTGATCCTTGAAGGG-TGCTCTTTATAATAGCAC
12443933 GCAATTTAGA
Statistics
Matches: 106, Mismatches: 20, Indels: 22
0.72 0.14 0.15
Matches are distributed among these distances:
29 5 0.05
30 13 0.12
32 4 0.04
33 3 0.03
35 16 0.15
36 61 0.58
37 4 0.04
ACGTcount: A:0.23, C:0.16, G:0.23, T:0.39
Consensus pattern (36 bp):
TTGTTGATCCTTGAAGGGTGCTCTTTATAATAGCAC
Found at i:12443911 original size:65 final size:67
Alignment explanation
Indices: 12443796--12443920 Score: 184
Period size: 65 Copynumber: 1.9 Consensus size: 67
12443786 CTAATAGCAG
*
12443796 TTGTTGATCCTTGAAGGGTGCTCTTGATAATAACACTTGTTGATCATTGGGGG-TGCTCTACACA
1 TTGTTGATCCTTGAAGAGTGCTCTTGATAATAACACTTGTTGATCATTGGGGGATGCTCTACACA
12443860 AT
66 AT
* * *
12443862 TTGTT-ATCCTT-AGAGAGTGCTCTTTATAATAGCACTTGTTGATCCTTGGGGGATGCTCT
1 TTGTTGATCCTTGA-AGAGTGCTCTTGATAATAACACTTGTTGATCATTGGGGGATGCTCT
12443921 TTATAATAGC
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
64 1 0.02
65 41 0.77
66 11 0.21
ACGTcount: A:0.21, C:0.17, G:0.24, T:0.38
Consensus pattern (67 bp):
TTGTTGATCCTTGAAGAGTGCTCTTGATAATAACACTTGTTGATCATTGGGGGATGCTCTACACA
AT
Found at i:12450050 original size:54 final size:54
Alignment explanation
Indices: 12449986--12450094 Score: 191
Period size: 54 Copynumber: 2.0 Consensus size: 54
12449976 ATGAACGAAC
* *
12449986 TATTTCACTATCAGATCGCCATAAGTGCTAACATTGTTGCAAGTTTCCACAAAG
1 TATTTCACTATAAGATCGCCATAAGTGCCAACATTGTTGCAAGTTTCCACAAAG
*
12450040 TATTTCACTATAAGATCGCCATAGGTGCCAACATTGTTGCAAGTTTCCACAAAG
1 TATTTCACTATAAGATCGCCATAAGTGCCAACATTGTTGCAAGTTTCCACAAAG
12450094 T
1 T
12450095 GTGCAACATG
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (54 bp):
TATTTCACTATAAGATCGCCATAAGTGCCAACATTGTTGCAAGTTTCCACAAAG
Found at i:12452547 original size:5 final size:5
Alignment explanation
Indices: 12452537--12452564 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
12452527 ACACACTTTA
12452537 TTTCT TTTCT TTTCT TTTCT TTTCT TTT
1 TTTCT TTTCT TTTCT TTTCT TTTCT TTT
12452565 TCAACCCCTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTCT
Found at i:12453196 original size:19 final size:20
Alignment explanation
Indices: 12453172--12453211 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
12453162 TTTTTTTTTG
12453172 AAACACAACA-AAA-CATGCA
1 AAACACAA-ATAAAGCATGCA
12453191 AAACACAAATAAAGCATGCA
1 AAACACAAATAAAGCATGCA
12453211 A
1 A
12453212 GATATATCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 1 0.05
19 11 0.58
20 7 0.37
ACGTcount: A:0.62, C:0.23, G:0.07, T:0.07
Consensus pattern (20 bp):
AAACACAAATAAAGCATGCA
Found at i:12455523 original size:14 final size:14
Alignment explanation
Indices: 12455501--12455534 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
12455491 TTTCTTTTTC
*
12455501 TTTTCTTTTTGAAT
1 TTTTTTTTTTGAAT
*
12455515 TTTTTTTTTTGCAT
1 TTTTTTTTTTGAAT
12455529 TTTTTT
1 TTTTTT
12455535 CTTTAAAAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.09, C:0.06, G:0.06, T:0.79
Consensus pattern (14 bp):
TTTTTTTTTTGAAT
Found at i:12455534 original size:25 final size:25
Alignment explanation
Indices: 12455487--12455534 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
12455477 TTTTTAAAAA
*
12455487 AATTTTTCTTTTTCTTTTCTTTTTG
1 AATTTTTCTTTTTCATTTCTTTTTG
*
12455512 AATTTTTTTTTTTGCATTT-TTTT
1 AATTTTTCTTTTT-CATTTCTTTT
12455535 CTTTAAAAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 16 0.80
26 4 0.20
ACGTcount: A:0.10, C:0.08, G:0.04, T:0.77
Consensus pattern (25 bp):
AATTTTTCTTTTTCATTTCTTTTTG
Found at i:12473360 original size:2 final size:2
Alignment explanation
Indices: 12473353--12473390 Score: 58
Period size: 2 Copynumber: 19.0 Consensus size: 2
12473343 NNNNNNNNNN
* *
12473353 AT AT AT AT AT AT AT AT AT AC AT AT AT AT AT AC AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
12473391 GGTATATGGT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:12473370 original size:12 final size:12
Alignment explanation
Indices: 12473353--12473390 Score: 67
Period size: 12 Copynumber: 3.2 Consensus size: 12
12473343 NNNNNNNNNN
*
12473353 ATATATATATAT
1 ATATATACATAT
12473365 ATATATACATAT
1 ATATATACATAT
12473377 ATATATACATAT
1 ATATATACATAT
12473389 AT
1 AT
12473391 GGTATATGGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (12 bp):
ATATATACATAT
Found at i:12478642 original size:20 final size:20
Alignment explanation
Indices: 12478610--12478648 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
12478600 ATAACCAAAT
12478610 TAAAAGTAATAACATAAAAA
1 TAAAAGTAATAACATAAAAA
*
12478630 TAAAA-TAACTAACTTAAAA
1 TAAAAGTAA-TAACATAAAA
12478649 GTAACCTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 3 0.18
20 14 0.82
ACGTcount: A:0.67, C:0.08, G:0.03, T:0.23
Consensus pattern (20 bp):
TAAAAGTAATAACATAAAAA
Found at i:12479560 original size:31 final size:31
Alignment explanation
Indices: 12479517--12479619 Score: 147
Period size: 31 Copynumber: 3.4 Consensus size: 31
12479507 CATTGCCGTT
* *
12479517 ATCACGAGCTTCGCTGTCGCTTGATATCTTG
1 ATCACGAACTTCGCTGCCGCTTGATATCTTG
12479548 ATCACGAACTTCGCTGCCGCTTGATATCTTG
1 ATCACGAACTTCGCTGCCGCTTGATATCTTG
* *
12479579 ATCACGAATTTCGCTGCCACTTG--ATCTTG
1 ATCACGAACTTCGCTGCCGCTTGATATCTTG
*
12479608 ATCACAAACTTC
1 ATCACGAACTTC
12479620 ACTGTTGCTT
Statistics
Matches: 66, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
29 16 0.24
31 50 0.76
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.33
Consensus pattern (31 bp):
ATCACGAACTTCGCTGCCGCTTGATATCTTG
Found at i:12479630 original size:29 final size:29
Alignment explanation
Indices: 12479517--12479635 Score: 130
Period size: 31 Copynumber: 4.0 Consensus size: 29
12479507 CATTGCCGTT
* *
12479517 ATCACGAGCTTCGCTGTCGCTTGATATCTTG
1 ATCACGAACTTCGCTGCCGCTTG--ATCTTG
12479548 ATCACGAACTTCGCTGCCGCTTGATATCTTG
1 ATCACGAACTTCGCTGCCGCTTG--ATCTTG
* *
12479579 ATCACGAATTTCGCTGCCACTTGATCTTG
1 ATCACGAACTTCGCTGCCGCTTGATCTTG
* * **
12479608 ATCACAAACTTCACTGTTGCTTGATCTT
1 ATCACGAACTTCGCTGCCGCTTGATCTT
12479636 CACTTCAAAA
Statistics
Matches: 78, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
29 28 0.36
31 50 0.64
ACGTcount: A:0.20, C:0.27, G:0.18, T:0.35
Consensus pattern (29 bp):
ATCACGAACTTCGCTGCCGCTTGATCTTG
Found at i:12479696 original size:18 final size:18
Alignment explanation
Indices: 12479670--12479714 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
12479660 TTGATCTCTG
12479670 AAATG-CTCTCAATCTTC
1 AAATGCCTCTCAATCTTC
* *
12479687 AAATGCCTCTGAATCTTT
1 AAATGCCTCTCAATCTTC
*
12479705 GAATGCCTCT
1 AAATGCCTCT
12479715 AAATGATTCA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
17 5 0.21
18 19 0.79
ACGTcount: A:0.27, C:0.27, G:0.11, T:0.36
Consensus pattern (18 bp):
AAATGCCTCTCAATCTTC
Found at i:12481233 original size:2 final size:2
Alignment explanation
Indices: 12481221--12481258 Score: 58
Period size: 2 Copynumber: 19.0 Consensus size: 2
12481211 AAGACCTATG
* *
12481221 GA GA AA GA GA GA GA GA GA GA GA GA GA GA GA AA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
12481259 CAGTTATGTG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.55, C:0.00, G:0.45, T:0.00
Consensus pattern (2 bp):
GA
Found at i:12484577 original size:74 final size:74
Alignment explanation
Indices: 12484459--12484642 Score: 202
Period size: 74 Copynumber: 2.5 Consensus size: 74
12484449 AATATCATTT
* * *
12484459 TTAA-AATTT-TATTTAAAACATTAATTTGATTTTTAATTTGAAAAT-TTAATTTTTTTATAAAT
1 TTAATAATTTATAATTAAAACTTTAATATGATTTTTAATTTGAAAATATTAA--TTTTTA-AAAT
12484521 T-A-TTAAAAAA
63 TAATTTAAAAAA
* *
12484531 TTAATAATTTATAATTAAAACTTTAATATGATTATTT-ATTTTAAAATATTAATTTTTACAATTA
1 TTAATAATTTATAATTAAAACTTTAATATGATT-TTTAATTTGAAAATATTAATTTTTAAAATTA
*
12484595 ATTTAAAATA
65 ATTTAAAAAA
*
12484605 TTAATAATTTATAAATT-AAACTTTAATATATATTTTTA
1 TTAATAATTTAT-AATTAAAACTTTAATAT-GATTTTTA
12484643 TTTAAATCTC
Statistics
Matches: 96, Mismatches: 7, Indels: 15
0.81 0.06 0.13
Matches are distributed among these distances:
72 8 0.08
73 12 0.12
74 62 0.65
75 14 0.15
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (74 bp):
TTAATAATTTATAATTAAAACTTTAATATGATTTTTAATTTGAAAATATTAATTTTTAAAATTAA
TTTAAAAAA
Found at i:12492572 original size:35 final size:36
Alignment explanation
Indices: 12492456--12492579 Score: 144
Period size: 36 Copynumber: 3.5 Consensus size: 36
12492446 TCTTAACACG
* *
12492456 TGTGGTATTCTTACCCCCACT-TATAGGCTATATTCA
1 TGTGGTATTCTTACCCCCA-TATCTAGGCCATATTCA
* * * *
12492492 TGTGGCATTCTTACCCCCACAACTAGGCCATATTTA
1 TGTGGTATTCTTACCCCCATATCTAGGCCATATTCA
* *
12492528 TGTGATATTCTTACCCCCATATCTAGG-GATATTCA
1 TGTGGTATTCTTACCCCCATATCTAGGCCATATTCA
*
12492563 TATGGTATTCTTACCCC
1 TGTGGTATTCTTACCCC
12492580 TTCATTTGGC
Statistics
Matches: 73, Mismatches: 14, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
35 21 0.29
36 52 0.71
ACGTcount: A:0.23, C:0.27, G:0.14, T:0.36
Consensus pattern (36 bp):
TGTGGTATTCTTACCCCCATATCTAGGCCATATTCA
Found at i:12498512 original size:38 final size:40
Alignment explanation
Indices: 12498461--12498560 Score: 123
Period size: 38 Copynumber: 2.5 Consensus size: 40
12498451 AGTGCCCGTG
*
12498461 TGCACGATGTGGGGGGATGTACACAATGGCA-CTGAT-TA
1 TGCACGATGTGGGGGGATGTACACAATGGCACCGGATATA
* ** * * *
12498499 TGCACGATGTGGGGGGATGCACATGATGGTACCGGCTATG
1 TGCACGATGTGGGGGGATGTACACAATGGCACCGGATATA
12498539 TGCACGATGTGGGGGGATGTAC
1 TGCACGATGTGGGGGGATGTAC
12498561 GTGAGCCGGG
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
38 27 0.52
39 3 0.06
40 22 0.42
ACGTcount: A:0.22, C:0.16, G:0.39, T:0.23
Consensus pattern (40 bp):
TGCACGATGTGGGGGGATGTACACAATGGCACCGGATATA
Found at i:12501189 original size:43 final size:43
Alignment explanation
Indices: 12501101--12501232 Score: 140
Period size: 43 Copynumber: 3.1 Consensus size: 43
12501091 GTAATTATAT
* * * *
12501101 TGACTCGGCTATGTGGGAGTAGGGAGTGCGCATAAGTCGAG-GA
1 TGACCCGGCTATGTGCGAGTAGGGAGTGCGCATAA-CCTAGTGA
*
12501144 TGACCCGGTTATGTGCGAGTAGGGAGTGCGCATAACCTAGTGA
1 TGACCCGGCTATGTGCGAGTAGGGAGTGCGCATAACCTAGTGA
** * * * * *
12501187 TGACCTAGCCATGTGCGAGTAAGGAGTGCACATGAGCTAGTGA
1 TGACCCGGCTATGTGCGAGTAGGGAGTGCGCATAACCTAGTGA
12501230 TGA
1 TGA
12501233 TGATGATGGG
Statistics
Matches: 75, Mismatches: 13, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
42 3 0.04
43 72 0.96
ACGTcount: A:0.25, C:0.17, G:0.36, T:0.22
Consensus pattern (43 bp):
TGACCCGGCTATGTGCGAGTAGGGAGTGCGCATAACCTAGTGA
Found at i:12501663 original size:60 final size:60
Alignment explanation
Indices: 12501564--12501711 Score: 179
Period size: 60 Copynumber: 2.5 Consensus size: 60
12501554 CACGGTAGCT
* * * * * * * *
12501564 TCTCGCTGCAGCGAAAAACTTTCTGTTTCTGGGTTACAATTTCGTTGCAGTGAGATTCAA
1 TCTCGCTGCAACGAAAAACATTATGTTTCTGGATCACAATTTCGCTGCAGCGAGATTAAA
*
12501624 TCTCGCTGCAACGAGAAACATTATGTTTCTGGATCACAATTTCGCTGCAGCGAGATTAAA
1 TCTCGCTGCAACGAAAAACATTATGTTTCTGGATCACAATTTCGCTGCAGCGAGATTAAA
* * * *
12501684 TCTCGCTGCAGCAAAAAACCTTCTGTTT
1 TCTCGCTGCAACGAAAAACATTATGTTT
12501712 TTGTCTTTTA
Statistics
Matches: 74, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
60 74 1.00
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (60 bp):
TCTCGCTGCAACGAAAAACATTATGTTTCTGGATCACAATTTCGCTGCAGCGAGATTAAA
Found at i:12515069 original size:2 final size:2
Alignment explanation
Indices: 12515059--12515102 Score: 61
Period size: 2 Copynumber: 22.0 Consensus size: 2
12515049 CATGACACAC
* * *
12515059 AT AT CT AT AT AT GT GT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
12515101 AT
1 AT
12515103 CCATCATCAT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (2 bp):
AT
Found at i:12515202 original size:42 final size:42
Alignment explanation
Indices: 12515156--12515296 Score: 185
Period size: 42 Copynumber: 3.4 Consensus size: 42
12515146 CTACCCACTA
* * *
12515156 GCACATGGCTGGGTCAGT-ATCGGCTTATGCACACTCCTACTC
1 GCACATAGCTGGGTCA-TCATCGACTTATGCGCACTCCTACTC
* * *
12515198 GCACATAGCTGGGTCATCATCGATTTATGCGTACTCCTATTC
1 GCACATAGCTGGGTCATCATCGACTTATGCGCACTCCTACTC
* *
12515240 ACACATAGCTGGGTCATCATCGACGTATGCGCACTCCTACTC
1 GCACATAGCTGGGTCATCATCGACTTATGCGCACTCCTACTC
*
12515282 GCACATAGCCGGGTC
1 GCACATAGCTGGGTC
12515297 CACATCAACA
Statistics
Matches: 85, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
41 1 0.01
42 84 0.99
ACGTcount: A:0.21, C:0.30, G:0.22, T:0.26
Consensus pattern (42 bp):
GCACATAGCTGGGTCATCATCGACTTATGCGCACTCCTACTC
Found at i:12522545 original size:2 final size:2
Alignment explanation
Indices: 12522535--12522578 Score: 61
Period size: 2 Copynumber: 22.0 Consensus size: 2
12522525 CATGACACAC
* * *
12522535 AT AT CT AT AT AT GT GT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
12522577 AT
1 AT
12522579 CCATCATCAT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (2 bp):
AT
Found at i:12522678 original size:42 final size:42
Alignment explanation
Indices: 12522632--12522772 Score: 185
Period size: 42 Copynumber: 3.4 Consensus size: 42
12522622 CTACCCACTA
* * *
12522632 GCACATGGCTGGGTCAGT-ATCGGCTTATGCACACTCCTACTC
1 GCACATAGCTGGGTCA-TCATCGACTTATGCGCACTCCTACTC
* * *
12522674 GCACATAGCTGGGTCATCATCGATTTATGCGTACTCCTATTC
1 GCACATAGCTGGGTCATCATCGACTTATGCGCACTCCTACTC
* *
12522716 ACACATAGCTGGGTCATCATCGACGTATGCGCACTCCTACTC
1 GCACATAGCTGGGTCATCATCGACTTATGCGCACTCCTACTC
*
12522758 GCACATAGCAGGGTC
1 GCACATAGCTGGGTC
12522773 CACATCAACA
Statistics
Matches: 85, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
41 1 0.01
42 84 0.99
ACGTcount: A:0.22, C:0.30, G:0.22, T:0.26
Consensus pattern (42 bp):
GCACATAGCTGGGTCATCATCGACTTATGCGCACTCCTACTC
Found at i:12527146 original size:35 final size:33
Alignment explanation
Indices: 12527107--12527203 Score: 92
Period size: 32 Copynumber: 2.9 Consensus size: 33
12527097 CCCAAAGTGG
12527107 TTTTTCAAAGGCTCAACCACAACCTTTCACAACGA
1 TTTTTCAAAGGCTCAACCACAACC--TCACAACGA
* * * ** *
12527142 TTTTTC-ACGAGCTCAACCAAAACC-CATAGTGG
1 TTTTTCAAAG-GCTCAACCACAACCTCACAACGA
12527174 TTTTTCAAAGGCTCAACCACAACCT-ACAAC
1 TTTTTCAAAGGCTCAACCACAACCTCACAAC
12527204 AATGGTTTTT
Statistics
Matches: 48, Mismatches: 11, Indels: 9
0.71 0.16 0.13
Matches are distributed among these distances:
32 25 0.52
33 2 0.04
34 2 0.04
35 19 0.40
ACGTcount: A:0.34, C:0.31, G:0.10, T:0.25
Consensus pattern (33 bp):
TTTTTCAAAGGCTCAACCACAACCTCACAACGA
Found at i:12527173 original size:67 final size:67
Alignment explanation
Indices: 12527085--12527235 Score: 223
Period size: 67 Copynumber: 2.3 Consensus size: 67
12527075 TGTTTATCGG
* *
12527085 GATCAACTAAAACCCAAAGTGGTTTTTCAAAGGCTCAACCACAACCTTTC-ACAACGATTTTTCA
1 GATCAACCAAAACCCAAAGTGGTTTTTCAAAGGCTCAACCACAACC-TACAACAACGATTTTTCA
12527149 CGA
65 CGA
* * * *
12527152 GCTCAACCAAAACCCATAGTGGTTTTTCAAAGGCTCAACCACAACCTACAACAATGGTTTTTCAC
1 GATCAACCAAAACCCAAAGTGGTTTTTCAAAGGCTCAACCACAACCTACAACAACGATTTTTCAC
*
12527217 GG
66 GA
12527219 GATCAACCAAAACCCAA
1 GATCAACCAAAACCCAA
12527236 CAACTAACTT
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
66 2 0.03
67 72 0.97
ACGTcount: A:0.36, C:0.28, G:0.13, T:0.23
Consensus pattern (67 bp):
GATCAACCAAAACCCAAAGTGGTTTTTCAAAGGCTCAACCACAACCTACAACAACGATTTTTCAC
GA
Found at i:12527188 original size:32 final size:32
Alignment explanation
Indices: 12527087--12527234 Score: 111
Period size: 35 Copynumber: 4.4 Consensus size: 32
12527077 TTTATCGGGA
*
12527087 TCAACTAAAACCCA-AAGTGGTTTTTCAAAGGC
1 TCAACCAAAACCCACAA-TGGTTTTTCAAAGGC
* * * *
12527119 TCAACCACAACCTTTCACAACGATTTTTC-ACGAGC
1 TCAACCAAAACC---CACAATGGTTTTTCAAAG-GC
* *
12527154 TCAACCAAAACCCATAGTGGTTTTTCAAAGGC
1 TCAACCAAAACCCACAATGGTTTTTCAAAGGC
* ** *
12527186 TCAACCACAACCTACAACAATGGTTTTTCACGGGA
1 TCAACCAAAACC--C-ACAATGGTTTTTCAAAGGC
12527221 TCAACCAAAACCCA
1 TCAACCAAAACCCA
12527235 ACAACTAACT
Statistics
Matches: 89, Mismatches: 18, Indels: 18
0.71 0.14 0.14
Matches are distributed among these distances:
32 34 0.38
33 3 0.03
34 3 0.03
35 47 0.53
36 2 0.02
ACGTcount: A:0.36, C:0.29, G:0.12, T:0.23
Consensus pattern (32 bp):
TCAACCAAAACCCACAATGGTTTTTCAAAGGC
Found at i:12537105 original size:43 final size:42
Alignment explanation
Indices: 12537029--12537120 Score: 130
Period size: 43 Copynumber: 2.2 Consensus size: 42
12537019 TTATGTGATA
* *
12537029 ATGATGACCCAGCTATGTCTGTATGGGAGTGCACATGAGCTG
1 ATGATGACCCAGCTATATCAGTATGGGAGTGCACATGAGCTG
* * *
12537071 ATGATGACCCATCTATATGCAGTGTGGGAGTGCACATGAGTTG
1 ATGATGACCCAGCTATAT-CAGTATGGGAGTGCACATGAGCTG
12537114 ATGATGA
1 ATGATGA
12537121 TGGGATGGTA
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
42 16 0.36
43 28 0.64
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.27
Consensus pattern (42 bp):
ATGATGACCCAGCTATATCAGTATGGGAGTGCACATGAGCTG
Found at i:12537141 original size:2 final size:2
Alignment explanation
Indices: 12537134--12537168 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
12537124 GATGGTATGC
12537134 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
12537169 GTGTGTGTGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:12537174 original size:2 final size:2
Alignment explanation
Indices: 12537169--12537199 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
12537159 TATATATATA
12537169 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT G
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT G
12537200 NGTAGTATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.00, G:0.52, T:0.48
Consensus pattern (2 bp):
GT
Found at i:12537210 original size:2 final size:2
Alignment explanation
Indices: 12537205--12537241 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
12537195 GTGTGNGTAG
12537205 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
12537242 GTGTGTGTGT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:12537246 original size:2 final size:2
Alignment explanation
Indices: 12537241--12537275 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
12537231 TATATATATA
12537241 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
12537276 TATAAAAAGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:12541720 original size:44 final size:47
Alignment explanation
Indices: 12541623--12541720 Score: 121
Period size: 49 Copynumber: 2.1 Consensus size: 47
12541613 GGCTATTTAT
* * * *
12541623 AATAGCTAACTAAACCTCAACCTCCTTGGTGTGCAAGTCAAGTAATTAT
1 AATAGCCAACTAAACCTAAACCTACTTGGTGTGCAAGTCAAG-AA-TAA
12541672 AATAGCCAACTAAACCTAAACCTACTTGGTGTGCAAGT-AA-AA-AA
1 AATAGCCAACTAAACCTAAACCTACTTGGTGTGCAAGTCAAGAATAA
12541716 AATAG
1 AATAG
12541721 TAAATAAGGA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
44 6 0.13
46 2 0.04
48 2 0.04
49 35 0.78
ACGTcount: A:0.41, C:0.20, G:0.14, T:0.24
Consensus pattern (47 bp):
AATAGCCAACTAAACCTAAACCTACTTGGTGTGCAAGTCAAGAATAA
Found at i:12561321 original size:19 final size:19
Alignment explanation
Indices: 12561287--12561323 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
12561277 CATTTCACAT
12561287 TTGGTAATGCCTATGCTGA
1 TTGGTAATGCCTATGCTGA
12561306 TTGGATAATGCC-ATGCTG
1 TTGG-TAATGCCTATGCTG
12561324 GCCAATTTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.22, C:0.16, G:0.27, T:0.35
Consensus pattern (19 bp):
TTGGTAATGCCTATGCTGA
Found at i:12573775 original size:2 final size:2
Alignment explanation
Indices: 12573768--12573812 Score: 81
Period size: 2 Copynumber: 22.5 Consensus size: 2
12573758 GTATTTTTCC
*
12573768 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
12573810 AT A
1 AT A
12573813 ATTCAATGAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:12574628 original size:11 final size:10
Alignment explanation
Indices: 12574603--12574633 Score: 53
Period size: 10 Copynumber: 3.0 Consensus size: 10
12574593 ATTTTTGTGA
12574603 AGATTGGATT
1 AGATTGGATT
12574613 AGATTGGATGT
1 AGATTGGAT-T
12574624 AGATTGGATT
1 AGATTGGATT
12574634 TGGATGTTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 10 0.50
11 10 0.50
ACGTcount: A:0.29, C:0.00, G:0.32, T:0.39
Consensus pattern (10 bp):
AGATTGGATT
Found at i:12575073 original size:90 final size:90
Alignment explanation
Indices: 12574898--12575063 Score: 203
Period size: 90 Copynumber: 1.8 Consensus size: 90
12574888 TAAATTTTAG
* * * *
12574898 TATTATTTTGTTTTTATCATCTTCAAGCTTCAAAAAGATTTCAATTATTAGTCTTTGATTTTTGG
1 TATTATTTTGTTTTCATCATCTTCAAGCTTCAAAAAGATTTCAATTATTAGTCTTTAATTTCTGC
* *
12574963 TTTTAGTAAATCAACTAAGTGTTGT
66 TTATAGCAAATCAACTAAGTGTTGT
* * *
12574988 TATTATTATT-TTTTCATCAT-TTCAAAGCTTTAAAAGGATTTCAA-TAGTTTGTCTTTAATTTC
1 TATTATT-TTGTTTTCATCATCTTC-AAGCTTCAAAAAGATTTCAATTA-TTAGTCTTTAATTTC
12575050 TGCTTATAGCAAAT
63 TGCTTATAGCAAAT
12575064 TAGATAAGTG
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
89 5 0.08
90 57 0.89
91 2 0.03
ACGTcount: A:0.29, C:0.11, G:0.11, T:0.49
Consensus pattern (90 bp):
TATTATTTTGTTTTCATCATCTTCAAGCTTCAAAAAGATTTCAATTATTAGTCTTTAATTTCTGC
TTATAGCAAATCAACTAAGTGTTGT
Found at i:12576344 original size:25 final size:25
Alignment explanation
Indices: 12576315--12576364 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
12576305 TAATAATATT
*
12576315 ATCTTCAT-GCAATAAATTAACATTA
1 ATCTTCATAG-AATAAATAAACATTA
*
12576340 ATCTTTATAGAATAAATAAACATTA
1 ATCTTCATAGAATAAATAAACATTA
12576365 GTTTAAAAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 21 0.95
26 1 0.05
ACGTcount: A:0.48, C:0.12, G:0.04, T:0.36
Consensus pattern (25 bp):
ATCTTCATAGAATAAATAAACATTA
Found at i:12581257 original size:24 final size:24
Alignment explanation
Indices: 12581230--12581285 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
12581220 AAAAAATGTT
* * *
12581230 TTAGTAATTAAGGAATTAGTTAAA
1 TTAGTAATTAAGAAATAAATTAAA
*
12581254 TTAGTTATTAAGAAATAAATTAAA
1 TTAGTAATTAAGAAATAAATTAAA
*
12581278 TAAGTAAT
1 TTAGTAAT
12581286 GTTAGAAAAT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.12, T:0.38
Consensus pattern (24 bp):
TTAGTAATTAAGAAATAAATTAAA
Found at i:12582197 original size:57 final size:53
Alignment explanation
Indices: 12582104--12582213 Score: 184
Period size: 57 Copynumber: 2.0 Consensus size: 53
12582094 TGTTAAAAAG
12582104 AAAATGGAGAGAGAGAGAGAGAGAGTTTTGGAGAGAGACGAGGGTAGGTTTTTTNT
1 AAAATGGAGAGAGAGAGAGAGAGAGTTTTGGAGAGAGAC-AGGG-AGGTTTTTT-T
12582160 AAAATAGGAGAGAGAGAGAGAGAGAGTTTTGGAGAGAGACAGGGAGGTTTTTTT
1 AAAAT-GGAGAGAGAGAGAGAGAGAGTTTTGGAGAGAGACAGGGAGGTTTTTTT
12582214 GTAGGTAGGC
Statistics
Matches: 53, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
54 1 0.02
55 9 0.17
56 9 0.17
57 34 0.64
ACGTcount: A:0.35, C:0.02, G:0.39, T:0.23
Consensus pattern (53 bp):
AAAATGGAGAGAGAGAGAGAGAGAGTTTTGGAGAGAGACAGGGAGGTTTTTTT
Found at i:12582211 original size:22 final size:22
Alignment explanation
Indices: 12582169--12582210 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
12582159 TAAAATAGGA
*
12582169 GAGAGAGAGAGAGAGAGTTTTG
1 GAGAGAGACAGAGAGAGTTTTG
*
12582191 GAGAGAGACAGGGAG-GTTTT
1 GAGAGAGACAGAGAGAGTTTT
12582211 TTTGTAGGTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.33, C:0.02, G:0.45, T:0.19
Consensus pattern (22 bp):
GAGAGAGACAGAGAGAGTTTTG
Found at i:12588966 original size:13 final size:13
Alignment explanation
Indices: 12588948--12588972 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
12588938 GGAGAAATTG
12588948 TGATTTTATAAAA
1 TGATTTTATAAAA
12588961 TGATTTTATAAA
1 TGATTTTATAAA
12588973 TTTTCTGAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TGATTTTATAAAA
Found at i:12591421 original size:27 final size:27
Alignment explanation
Indices: 12591358--12591421 Score: 67
Period size: 27 Copynumber: 2.4 Consensus size: 27
12591348 AAACATTTTT
* * **
12591358 AGCAAGTATTCTTCCAAATCATTTTCC
1 AGCAAGCATTCATCCAAATCATTTTAA
*
12591385 AGC-AGTCATTCATCCAAGTCATTTTAA
1 AGCAAG-CATTCATCCAAATCATTTTAA
12591412 AGCAAGCATT
1 AGCAAGCATT
12591422 ACAAGATGTA
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
26 2 0.07
27 26 0.87
28 2 0.07
ACGTcount: A:0.33, C:0.23, G:0.11, T:0.33
Consensus pattern (27 bp):
AGCAAGCATTCATCCAAATCATTTTAA
Found at i:12595089 original size:21 final size:19
Alignment explanation
Indices: 12595063--12595102 Score: 53
Period size: 21 Copynumber: 2.0 Consensus size: 19
12595053 TGTTGAATCC
*
12595063 TTAAAAGTATCATGCAATTAA
1 TTAAAAGCAT-ATG-AATTAA
12595084 TTAAAAGCATATGAATTAA
1 TTAAAAGCATATGAATTAA
12595103 GTTCACAAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 6 0.33
20 3 0.17
21 9 0.50
ACGTcount: A:0.50, C:0.07, G:0.10, T:0.33
Consensus pattern (19 bp):
TTAAAAGCATATGAATTAA
Found at i:12602934 original size:45 final size:45
Alignment explanation
Indices: 12602848--12602936 Score: 108
Period size: 45 Copynumber: 2.0 Consensus size: 45
12602838 TCGAAATATC
* **
12602848 TTGTTAAACTTTATCAAGCATCACTGAATCCTTTTAAGAAAAAAT
1 TTGTTAAACTTTATCAAGCATCACTAAATCCTTAAAAGAAAAAAT
* * *
12602893 TTGTTGAACTTTATCAAGCATCATTAAATGC-TAAAAGGAAAAAA
1 TTGTTAAACTTTATCAAGCATCACTAAATCCTTAAAA-GAAAAAA
12602937 ATATCGAAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
44 3 0.08
45 34 0.92
ACGTcount: A:0.43, C:0.13, G:0.11, T:0.33
Consensus pattern (45 bp):
TTGTTAAACTTTATCAAGCATCACTAAATCCTTAAAAGAAAAAAT
Found at i:12604168 original size:21 final size:20
Alignment explanation
Indices: 12604118--12604169 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
12604108 CTACAACAAT
* *
12604118 TCTATCAATACATTCTAGAA
1 TCTATCAATACATGCAAGAA
* *
12604138 TGTATAAATACATGCAAGGAA
1 TCTATCAATACATGCAA-GAA
12604159 TCTATCAATAC
1 TCTATCAATAC
12604170 CTTTGGGAAT
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
20 13 0.52
21 12 0.48
ACGTcount: A:0.42, C:0.17, G:0.10, T:0.31
Consensus pattern (20 bp):
TCTATCAATACATGCAAGAA
Found at i:12605488 original size:78 final size:79
Alignment explanation
Indices: 12605376--12605562 Score: 198
Period size: 78 Copynumber: 2.4 Consensus size: 79
12605366 TACAACATTT
* * * * *
12605376 TCATATATC-ATCACCATGATTAACCCATAGTGTATATGACTATCTCAACACATACA-TCATGGA
1 TCATAAATCAATCA-CATGCTTAGCCCATAATGTATATGACTATCTCAACACATACACTCATAGA
** *
12605439 ATGGATTTCATAAAT
65 ATACATTTCATAAAC
* * * * *
12605454 TCATAATTCAATCACATGCTTAGCCCATAATGTATATGATTATTTTAACACATACATCTCATAGC
1 TCATAAATCAATCACATGCTTAGCCCATAATGTATATGACTATCTCAACACATACA-CTCATAGA
*
12605519 ATACATTTCATAACC
65 ATACATTTCATAAAC
* *
12605534 TCATAAATCACTCACATACTTAGCCCATA
1 TCATAAATCAATCACATGCTTAGCCCATA
12605563 GCTACATGAT
Statistics
Matches: 89, Mismatches: 17, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
78 43 0.48
79 4 0.04
80 42 0.47
ACGTcount: A:0.37, C:0.23, G:0.07, T:0.33
Consensus pattern (79 bp):
TCATAAATCAATCACATGCTTAGCCCATAATGTATATGACTATCTCAACACATACACTCATAGAA
TACATTTCATAAAC
Found at i:12605557 original size:80 final size:79
Alignment explanation
Indices: 12605399--12605620 Score: 220
Period size: 79 Copynumber: 2.8 Consensus size: 79
12605389 CCATGATTAA
* * * ** * *
12605399 CCCATAGTGTATATGACTATCTCAACACATACA--TCATGGAATGGATTTCATAAATTCATAATT
1 CCCATAATGTATATGA-TATCTTAACACATACATCTCATGGCATACATTTCATAAACTCATAAAT
*
12605462 CAATCACATGCTTAG
65 CAATCACATACTTAG
* * *
12605477 CCCATAATGTATATGATTATTTTAACACATACATCTCATAGCATACATTTCATAACCTCATAAAT
1 CCCATAATGTATATGA-TATCTTAACACATACATCTCATGGCATACATTTCATAAACTCATAAAT
*
12605542 CACTCACATACTTAG
65 CAATCACATACTTAG
* * * *
12605557 CCCAT-A-GCTACATGATATGCTTAACACATACATCTTATGGCATACATGTT-ACAATCTCATAA
1 CCCATAATG-TATATGATAT-CTTAACACATACATCTCATGGCATACAT-TTCATAAACTCATAA
12605619 AT
63 AT
12605621 GGAACTCATG
Statistics
Matches: 120, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
78 33 0.28
79 44 0.37
80 43 0.36
ACGTcount: A:0.36, C:0.23, G:0.09, T:0.32
Consensus pattern (79 bp):
CCCATAATGTATATGATATCTTAACACATACATCTCATGGCATACATTTCATAAACTCATAAATC
AATCACATACTTAG
Found at i:12612931 original size:29 final size:29
Alignment explanation
Indices: 12612876--12612932 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
12612866 ATAAATATTC
*
12612876 AAATGAGATTTTTTTATTAAAATTTAAAA
1 AAATGAGATTTTTTTATTAAAAGTTAAAA
*
12612905 AAATGAGATCTTTTTTATT-GAAGTTAAA
1 AAATGAGAT-TTTTTTATTAAAAGTTAAA
12612933 GAAGAAAGAG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 16 0.64
30 9 0.36
ACGTcount: A:0.44, C:0.02, G:0.11, T:0.44
Consensus pattern (29 bp):
AAATGAGATTTTTTTATTAAAAGTTAAAA
Found at i:12613988 original size:29 final size:29
Alignment explanation
Indices: 12613952--12614012 Score: 86
Period size: 29 Copynumber: 2.1 Consensus size: 29
12613942 TGGATATTTA
12613952 ATATATCTTGCTTAGCTACTATAGATATT
1 ATATATCTTGCTTAGCTACTATAGATATT
* * * *
12613981 ATATATCTTGTTTAGCTATTGTGGATATT
1 ATATATCTTGCTTAGCTACTATAGATATT
12614010 ATA
1 ATA
12614013 AATATTTTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.30, C:0.10, G:0.13, T:0.48
Consensus pattern (29 bp):
ATATATCTTGCTTAGCTACTATAGATATT
Found at i:12615037 original size:34 final size:36
Alignment explanation
Indices: 12614997--12615081 Score: 111
Period size: 34 Copynumber: 2.4 Consensus size: 36
12614987 GTTGTATAAT
12614997 TTAAATATTAATATTTTAAATTAATT-T-TTTTAAG
1 TTAAATATTAATATTTTAAATTAATTATATTTTAAG
* * **
12615031 TTAAATATTAATATTTTTATTTTTTTATATTTTAAG
1 TTAAATATTAATATTTTAAATTAATTATATTTTAAG
*
12615067 TTGAATATTAATATT
1 TTAAATATTAATATT
12615082 CATCAAACTT
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
34 22 0.50
35 1 0.02
36 21 0.48
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.59
Consensus pattern (36 bp):
TTAAATATTAATATTTTAAATTAATTATATTTTAAG
Found at i:12615052 original size:29 final size:32
Alignment explanation
Indices: 12614997--12615081 Score: 89
Period size: 36 Copynumber: 2.5 Consensus size: 32
12614987 GTTGTATAAT
12614997 TTAAATATTAATATTTTAAATTAATTTTTTTAAG
1 TTAAATATTAATATTTT--ATTAATTTTTTTAAG
**
12615031 TTAAATATTAATATTTTTATTTTTTTATATTTTAAG
1 TTAAATATTAATA-TTTTA-TTAATT-T-TTTTAAG
*
12615067 TTGAATATTAATATT
1 TTAAATATTAATATT
12615082 CATCAAACTT
Statistics
Matches: 44, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
33 1 0.02
34 17 0.39
35 7 0.16
36 19 0.43
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.59
Consensus pattern (32 bp):
TTAAATATTAATATTTTATTAATTTTTTTAAG
Found at i:12616840 original size:16 final size:18
Alignment explanation
Indices: 12616810--12616851 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
12616800 TTTTTTATGA
12616810 ATTTTTTTATATATTT-T
1 ATTTTTTTATATATTTCT
*
12616827 ATTTTTTTGT-TATTTCCT
1 ATTTTTTTATATATTT-CT
12616845 ATTTTTT
1 ATTTTTT
12616852 AAAATGTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 5 0.23
17 9 0.41
18 8 0.36
ACGTcount: A:0.17, C:0.05, G:0.02, T:0.76
Consensus pattern (18 bp):
ATTTTTTTATATATTTCT
Found at i:12617457 original size:16 final size:17
Alignment explanation
Indices: 12617427--12617465 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
12617417 TTCATAAATT
* *
12617427 AAAAAATGTACATAATA
1 AAAAAATGTAAATAAGA
12617444 AAAAAAT-TAAATAAGA
1 AAAAAATGTAAATAAGA
12617460 AAAAAA
1 AAAAAA
12617466 CCATGGGTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 13 0.65
17 7 0.35
ACGTcount: A:0.74, C:0.03, G:0.05, T:0.18
Consensus pattern (17 bp):
AAAAAATGTAAATAAGA
Found at i:12619543 original size:13 final size:13
Alignment explanation
Indices: 12619496--12619544 Score: 53
Period size: 13 Copynumber: 3.6 Consensus size: 13
12619486 ACAAGTACTT
*
12619496 ATAAACATTTTCA
1 ATAAAAATTTTCA
*
12619509 ATAAAACTTTTCTA
1 ATAAAAATTTTC-A
*
12619523 CAAAAAAATTTTCA
1 -ATAAAAATTTTCA
12619537 ATAAAAAT
1 ATAAAAAT
12619545 GTTAAAAATA
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
13 17 0.59
14 2 0.07
15 10 0.34
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (13 bp):
ATAAAAATTTTCA
Found at i:12619678 original size:2 final size:2
Alignment explanation
Indices: 12619671--12619730 Score: 120
Period size: 2 Copynumber: 30.0 Consensus size: 2
12619661 CACGTTTTTA
12619671 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
12619713 AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT
12619731 CTCTCTNNNN
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 58 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:12623316 original size:31 final size:31
Alignment explanation
Indices: 12623281--12623343 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
12623271 TACCTTATCG
*
12623281 AATATAACTCTTTGAATAGTTATACTATGAA
1 AATATAACTCTTTGAATAATTATACTATGAA
* *
12623312 AATATAACTCTTTGAGTAATTATATTATGAA
1 AATATAACTCTTTGAATAATTATACTATGAA
12623343 A
1 A
12623344 GGAAACAACT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.43, C:0.08, G:0.10, T:0.40
Consensus pattern (31 bp):
AATATAACTCTTTGAATAATTATACTATGAA
Found at i:12626573 original size:29 final size:29
Alignment explanation
Indices: 12626541--12626600 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 29
12626531 GCTGTACAAT
* * *
12626541 AATAGGTACAAGGGAAGAAGTTGTACGTG
1 AATAGGTACAAGAGAAAAAGGTGTACGTG
* *
12626570 AATAGGTATAAGAGAAAAAGGTGTATGTG
1 AATAGGTACAAGAGAAAAAGGTGTACGTG
12626599 AA
1 AA
12626601 CAAGTATACG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.43, C:0.03, G:0.32, T:0.22
Consensus pattern (29 bp):
AATAGGTACAAGAGAAAAAGGTGTACGTG
Done.