Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38630433
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 2298367 characters in sequence are not A, C, G, or T
File 34 of 97
Found at i:14139198 original size:14 final size:14
Alignment explanation
Indices: 14139179--14139206 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
14139169 TTCAGGGAAT
14139179 AGATAGATTCATGA
1 AGATAGATTCATGA
14139193 AGATAGATTCATGA
1 AGATAGATTCATGA
14139207 CCATGACAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.07, G:0.21, T:0.29
Consensus pattern (14 bp):
AGATAGATTCATGA
Found at i:14140260 original size:23 final size:23
Alignment explanation
Indices: 14140234--14140304 Score: 72
Period size: 23 Copynumber: 3.1 Consensus size: 23
14140224 TACAAACATA
14140234 TTTTTATTATAATTTAATAATAT
1 TTTTTATTATAATTTAATAATAT
* ** *
14140257 TTTTTATTAAAAGATAATTAA-AC
1 TTTTTATTATAATTTAA-TAATAT
* *
14140280 CTTTTATTATAATTAAATAATAT
1 TTTTTATTATAATTTAATAATAT
14140303 TT
1 TT
14140305 AATATTAAAA
Statistics
Matches: 35, Mismatches: 11, Indels: 4
0.70 0.22 0.08
Matches are distributed among these distances:
22 3 0.09
23 29 0.83
24 3 0.09
ACGTcount: A:0.42, C:0.03, G:0.01, T:0.54
Consensus pattern (23 bp):
TTTTTATTATAATTTAATAATAT
Found at i:14144485 original size:2 final size:2
Alignment explanation
Indices: 14144473--14144512 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
14144463 AACCCAACTG
*
14144473 TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
14144513 ATGTGTGTGT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:14144657 original size:2 final size:2
Alignment explanation
Indices: 14144603--14144639 Score: 58
Period size: 2 Copynumber: 19.0 Consensus size: 2
14144593 ATTGCAAGAN
*
14144603 AT AT AC AT AT AT AT AT -T AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14144640 GTGTGTGTGT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:14149715 original size:2 final size:2
Alignment explanation
Indices: 14149708--14149751 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
14149698 TATTCGGGAC
14149708 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
14149750 CT
1 CT
14149752 NNNNNNNNNN
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:14149795 original size:2 final size:2
Alignment explanation
Indices: 14149788--14149820 Score: 50
Period size: 2 Copynumber: 16.5 Consensus size: 2
14149778 NNNNNNNTAC
14149788 TA TA TA TA TA TA TA TA TA CTA TA T- TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA T
14149821 TGTTCGTCTC
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
1 1 0.03
2 26 0.90
3 2 0.07
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:14149832 original size:2 final size:2
Alignment explanation
Indices: 14149827--14149871 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
14149817 ATATTGTTCG
14149827 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
14149869 TC T
1 TC T
14149872 ATTCTTTTTA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:14154922 original size:2 final size:2
Alignment explanation
Indices: 14154917--14154942 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
14154907 TGACTTTTTA
14154917 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
14154943 GTCTGTATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14159769 original size:2 final size:2
Alignment explanation
Indices: 14159762--14159796 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
14159752 TGCATAACAT
14159762 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
14159797 GTACATACAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:14172407 original size:55 final size:51
Alignment explanation
Indices: 14172316--14172540 Score: 215
Period size: 55 Copynumber: 4.2 Consensus size: 51
14172306 ATATCATAAC
* *
14172316 TAAATACTTTATTATTTTT-TCTTTTTTATCTACCTAAATCTATTTTTTTGCAA
1 TAAATA-TTTTTTATTTTTCTATTTTTTATCTACCTAAATCTATTTTTTT--AA
* *
14172369 TCAAATATTTATTTATTTCTCTATTTTTTATCTACCTAAA--TATGTTTTT-A
1 T-AAATATTT-TTTATTTTTCTATTTTTTATCTACCTAAATCTATTTTTTTAA
* * *
14172419 TAATTATTTTTTTATTTTTCTATTTCTTTTTATCTAGCTAAATCTGTTTTTTTATAA
1 TAAATA-TTTTTTATTTTTCTA--T-TTTTTATCTACCTAAATCT-ATTTTTT-TAA
*
14172476 TTAAATATTTTTTATTTTTCTATTTTTCTATCTACCTAAATCTATTTTTTATATC
1 -TAAATATTTTTTATTTTTCTATTTTT-TATCTACCTAAATCTATTTTTT-TA-A
14172531 TAAATATTTT
1 TAAATATTTT
14172541 ATTTATTTAT
Statistics
Matches: 144, Mismatches: 13, Indels: 29
0.77 0.07 0.16
Matches are distributed among these distances:
49 15 0.10
50 5 0.03
51 1 0.01
52 15 0.10
53 12 0.08
54 36 0.25
55 38 0.26
56 1 0.01
57 16 0.11
58 5 0.03
ACGTcount: A:0.26, C:0.11, G:0.02, T:0.61
Consensus pattern (51 bp):
TAAATATTTTTTATTTTTCTATTTTTTATCTACCTAAATCTATTTTTTTAA
Found at i:14172463 original size:107 final size:111
Alignment explanation
Indices: 14172323--14172566 Score: 306
Period size: 107 Copynumber: 2.2 Consensus size: 111
14172313 AACTAAATAC
*
14172323 TTTA-TTATTT-TTTCTTTTTTATCTACCTAAATCTATTTTTTTGCAATCAAATATTTATTTATT
1 TTTATTTATTTATTTC-TTTTTATCTACCTAAATCTATTTTTTTACAATCAAATATTT-TTTATT
*
14172386 TCTCTATTTTT-TATCTACCTAAA-TATGTTTT-TA-TAATTATTTT-
64 TCTCTATTTTTCTATCTACCTAAACTATGTTTTATACTAAATATTTTA
* * * *
14172429 TTTATTT-TTCTATTTCTTTTTATCTAGCTAAATCTGTTTTTTTATAATTAAATATTTTTTATTT
1 TTTATTTATT-TATTTCTTTTTATCTACCTAAATCTATTTTTTTACAATCAAATATTTTTTATTT
* *
14172493 TTCTATTTTTCTATCTACCTAAATCTATTTTTTATATCTAAATATTTTA
65 CTCTATTTTTCTATCTACCTAAA-CTATGTTTTATA-CTAAATATTTTA
*
14172542 TTTATTTATTTATTTATTTTTATCT
1 TTTATTTATTTATTTCTTTTTATCT
14172567 TTAGGTCTAC
Statistics
Matches: 118, Mismatches: 9, Indels: 15
0.83 0.06 0.11
Matches are distributed among these distances:
106 22 0.19
107 51 0.43
108 4 0.03
109 7 0.06
110 2 0.02
112 9 0.08
113 21 0.18
114 2 0.02
ACGTcount: A:0.25, C:0.10, G:0.02, T:0.63
Consensus pattern (111 bp):
TTTATTTATTTATTTCTTTTTATCTACCTAAATCTATTTTTTTACAATCAAATATTTTTTATTTC
TCTATTTTTCTATCTACCTAAACTATGTTTTATACTAAATATTTTA
Found at i:14172526 original size:54 final size:53
Alignment explanation
Indices: 14172311--14172540 Score: 242
Period size: 54 Copynumber: 4.3 Consensus size: 53
14172301 TACATATATC
* * *
14172311 ATAACTAAATACTTTATTATTTTT-TCTTTTTTATCTACCTAAATCTATTTTTT
1 ATAATTAAATA-TTTTTTATTTTTCTATTTTTTATCTACCTAAATCTATTTTTT
* *
14172364 -TGCAATCAAATATTTATTTATTTCTCTATTTTTTATCTACCTAAA--TATGTTTTT
1 AT--AATTAAATATTT-TTTATTTTTCTATTTTTTATCTACCTAAATCTAT-TTTTT
* *
14172418 ATAATT--AT-TTTTTTATTTTTCTATTTCTTTTTATCTAGCTAAATCTGTTTTTTT
1 ATAATTAAATATTTTTTATTTTTCTA--T-TTTTTATCTACCTAAATCT-ATTTTTT
14172472 ATAATTAAATATTTTTTATTTTTCTATTTTTCTATCTACCTAAATCTATTTTTT
1 ATAATTAAATATTTTTTATTTTTCTATTTTT-TATCTACCTAAATCTATTTTTT
14172526 AT-ATCTAAATATTTT
1 ATAAT-TAAATATTTT
14172541 ATTTATTTAT
Statistics
Matches: 149, Mismatches: 11, Indels: 33
0.77 0.06 0.17
Matches are distributed among these distances:
49 11 0.07
50 3 0.02
51 3 0.02
52 16 0.11
53 11 0.07
54 53 0.36
55 35 0.23
56 2 0.01
57 15 0.10
ACGTcount: A:0.27, C:0.11, G:0.02, T:0.60
Consensus pattern (53 bp):
ATAATTAAATATTTTTTATTTTTCTATTTTTTATCTACCTAAATCTATTTTTT
Found at i:14176114 original size:2 final size:2
Alignment explanation
Indices: 14176107--14176132 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
14176097 AATATAGTTA
14176107 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
14176133 TAGAAATAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14183141 original size:14 final size:14
Alignment explanation
Indices: 14183122--14183151 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
14183112 CAAAAATTAT
14183122 AACTTATAAAAAAA
1 AACTTATAAAAAAA
14183136 AACTTATAAAAAAA
1 AACTTATAAAAAAA
14183150 AA
1 AA
14183152 ATTTACCAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.73, C:0.07, G:0.00, T:0.20
Consensus pattern (14 bp):
AACTTATAAAAAAA
Found at i:14187380 original size:26 final size:26
Alignment explanation
Indices: 14187346--14187405 Score: 93
Period size: 26 Copynumber: 2.3 Consensus size: 26
14187336 AACTGACTTT
*
14187346 CCAATAGAATTTTTCATTGGAAATTA
1 CCAACAGAATTTTTCATTGGAAATTA
* *
14187372 CCTACAGAATTTTTCATTGGGAATTA
1 CCAACAGAATTTTTCATTGGAAATTA
14187398 CCAACAGA
1 CCAACAGA
14187406 TTTCTGACAG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (26 bp):
CCAACAGAATTTTTCATTGGAAATTA
Found at i:14189637 original size:109 final size:108
Alignment explanation
Indices: 14189467--14189680 Score: 356
Period size: 109 Copynumber: 2.0 Consensus size: 108
14189457 ATATTCATAC
* *
14189467 ATAAGCTAAAAGAAATTGAAACAAACTATCATAATCATCATCAAAATATAAGAATTAAGACTAAT
1 ATAAGCTAAAAGAAATTGAAACAAACTATCAAAATCATCATCAAAATATAAGAATCAAGACTAAT
* **
14189532 TTCCATTCATGTTTACAATAAAAAATGTTAACAAAAACATGCAT
66 TCCCACACATGTTTACAATAAAAAATGTTAA-AAAAACATGCAT
*
14189576 ATAAGCTAAAAGAAATTGAAACAAACTATCAAAATCATCATCAAAATGTAAGAATCAAGACTAAT
1 ATAAGCTAAAAGAAATTGAAACAAACTATCAAAATCATCATCAAAATATAAGAATCAAGACTAAT
*
14189641 TCCCACACATGTTTACAATAAAAAATGTTAATAAAACATG
66 TCCCACACATGTTTACAATAAAAAATGTTAAAAAAACATG
14189681 ACATTCTAGC
Statistics
Matches: 98, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
108 8 0.08
109 90 0.92
ACGTcount: A:0.52, C:0.14, G:0.08, T:0.26
Consensus pattern (108 bp):
ATAAGCTAAAAGAAATTGAAACAAACTATCAAAATCATCATCAAAATATAAGAATCAAGACTAAT
TCCCACACATGTTTACAATAAAAAATGTTAAAAAAACATGCAT
Found at i:14194408 original size:5 final size:5
Alignment explanation
Indices: 14194371--14194405 Score: 61
Period size: 5 Copynumber: 7.0 Consensus size: 5
14194361 TGTGACTCCT
*
14194371 AGTTA AGTTA AGTTA AGTTA AGTTA AGTTA GGTTA
1 AGTTA AGTTA AGTTA AGTTA AGTTA AGTTA AGTTA
14194406 GGTCGAATAG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.37, C:0.00, G:0.23, T:0.40
Consensus pattern (5 bp):
AGTTA
Found at i:14201875 original size:13 final size:13
Alignment explanation
Indices: 14201857--14201881 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14201847 TGCTTTTACG
14201857 CTACAAAAATTAT
1 CTACAAAAATTAT
14201870 CTACAAAAATTA
1 CTACAAAAATTA
14201882 AAGTTTGCAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.16, G:0.00, T:0.28
Consensus pattern (13 bp):
CTACAAAAATTAT
Found at i:14207314 original size:22 final size:22
Alignment explanation
Indices: 14207286--14207346 Score: 104
Period size: 22 Copynumber: 2.8 Consensus size: 22
14207276 TTGGTATCAA
*
14207286 AGCTTTTGGTTTTAAAGAGCAG
1 AGCTTTTGATTTTAAAGAGCAG
*
14207308 AGCTTTTGATTTTAAAGATCAG
1 AGCTTTTGATTTTAAAGAGCAG
14207330 AGCTTTTGATTTTAAAG
1 AGCTTTTGATTTTAAAG
14207347 TGGTTTTAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 37 1.00
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (22 bp):
AGCTTTTGATTTTAAAGAGCAG
Found at i:14216344 original size:2 final size:2
Alignment explanation
Indices: 14216290--14216332 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
14216280 TTCAACATTA
14216290 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14216332 A
1 A
14216333 AAATGTTATA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:14220134 original size:10 final size:10
Alignment explanation
Indices: 14220119--14220157 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
14220109 ACTAAATAAG
14220119 AAGAAAAAGA
1 AAGAAAAAGA
14220129 AAGAAAAAGA
1 AAGAAAAAGA
* *
14220139 AAAAGAAAACA
1 AAGA-AAAAGA
14220150 AAGAAAAA
1 AAGAAAAA
14220158 AAGCAAGCAG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
10 17 0.68
11 8 0.32
ACGTcount: A:0.82, C:0.03, G:0.15, T:0.00
Consensus pattern (10 bp):
AAGAAAAAGA
Found at i:14220158 original size:16 final size:16
Alignment explanation
Indices: 14220119--14220157 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
14220109 ACTAAATAAG
14220119 AAGAAAAAGAAAGAAA
1 AAGAAAAAGAAAGAAA
*
14220135 AAGAAAAAGAAA-ACA
1 AAGAAAAAGAAAGAAA
14220150 AAGAAAAA
1 AAGAAAAA
14220158 AAGCAAGCAG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 10 0.45
16 12 0.55
ACGTcount: A:0.82, C:0.03, G:0.15, T:0.00
Consensus pattern (16 bp):
AAGAAAAAGAAAGAAA
Found at i:14223654 original size:14 final size:14
Alignment explanation
Indices: 14223632--14223691 Score: 54
Period size: 14 Copynumber: 4.4 Consensus size: 14
14223622 TGCAATTGTC
*
14223632 TATTTTTTATTTAT
1 TATTATTTATTTAT
*
14223646 TATTATTTAATTAT
1 TATTATTTATTTAT
*
14223660 TATT-TTAATTTTAT
1 TATTATTTA-TTTAT
*
14223674 CA-TATTT-TTTAT
1 TATTATTTATTTAT
14223686 TATTAT
1 TATTAT
14223692 ATTTTCTATT
Statistics
Matches: 36, Mismatches: 7, Indels: 7
0.72 0.14 0.14
Matches are distributed among these distances:
12 6 0.17
13 7 0.19
14 23 0.64
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (14 bp):
TATTATTTATTTAT
Found at i:14223662 original size:17 final size:16
Alignment explanation
Indices: 14223632--14223713 Score: 59
Period size: 15 Copynumber: 5.3 Consensus size: 16
14223622 TGCAATTGTC
*
14223632 TATTTTTTATTTATTAT
1 TATTTATTA-TTATTAT
14223649 TATTTAATTATTATT-T
1 TATTT-ATTATTATTAT
* *
14223665 TAATT-TTATCA-TAT
1 TATTTATTATTATTAT
*
14223679 TTTTTATTATTA-TAT
1 TATTTATTATTATTAT
14223694 T-TTCTATT-TTATTAT
1 TATT-TATTATTATTAT
14223709 TATTT
1 TATTT
14223714 TTTTTATATC
Statistics
Matches: 53, Mismatches: 6, Indels: 14
0.73 0.08 0.19
Matches are distributed among these distances:
13 1 0.02
14 14 0.26
15 18 0.34
16 7 0.13
17 10 0.19
18 3 0.06
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (16 bp):
TATTTATTATTATTAT
Found at i:14223691 original size:32 final size:32
Alignment explanation
Indices: 14223655--14223720 Score: 82
Period size: 32 Copynumber: 2.1 Consensus size: 32
14223645 TTATTATTTA
14223655 ATTATTATTTT-AATTTTATCA-TATTTTTTATT
1 ATTA-TATTTTCAATTTTATCATTATTTTTT-TT
* *
14223687 ATTATATTTTCTATTTTATTATTATTTTTTTT
1 ATTATATTTTCAATTTTATCATTATTTTTTTT
14223719 AT
1 AT
14223721 ATCTTATATT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
31 6 0.20
32 16 0.53
33 8 0.27
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (32 bp):
ATTATATTTTCAATTTTATCATTATTTTTTTT
Found at i:14223708 original size:23 final size:27
Alignment explanation
Indices: 14223649--14223712 Score: 75
Period size: 23 Copynumber: 2.6 Consensus size: 27
14223639 TATTTATTAT
* *
14223649 TATTTAATTATTATTTTAATTTTATCA
1 TATTTTATTATTATTATAATTTTATCA
14223676 TATTTT-TTATTATTAT-A-TTT-TC-
1 TATTTTATTATTATTATAATTTTATCA
14223698 TATTTTATTATTATT
1 TATTTTATTATTATT
14223713 TTTTTTATAT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
22 6 0.18
23 10 0.29
24 3 0.09
25 1 0.03
26 9 0.26
27 5 0.15
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (27 bp):
TATTTTATTATTATTATAATTTTATCA
Found at i:14225506 original size:9 final size:9
Alignment explanation
Indices: 14225494--14225523 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
14225484 ATTATTATTA
14225494 TTTATATAT
1 TTTATATAT
14225503 TTTATATAT
1 TTTATATAT
14225512 TTTATATAT
1 TTTATATAT
14225521 TTT
1 TTT
14225524 TTAGTGTCTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (9 bp):
TTTATATAT
Found at i:14225622 original size:20 final size:19
Alignment explanation
Indices: 14225594--14225631 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
14225584 ACAGTCTCCA
14225594 ATCACTCAATTTCTAAAATC
1 ATCACTCAATTTC-AAAATC
*
14225614 ATCATTCAATTTCAAAAT
1 ATCACTCAATTTCAAAAT
14225632 GATTTATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.42, C:0.21, G:0.00, T:0.37
Consensus pattern (19 bp):
ATCACTCAATTTCAAAATC
Found at i:14231540 original size:17 final size:16
Alignment explanation
Indices: 14231514--14231549 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 16
14231504 TGATATATAT
*
14231514 TTACATAATATTATCTA
1 TTACAAAATATTAT-TA
14231531 TTACAAAATATTATTA
1 TTACAAAATATTATTA
14231547 TTA
1 TTA
14231550 TATATATAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 5 0.28
17 13 0.72
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATATTATTA
Found at i:14234231 original size:13 final size:13
Alignment explanation
Indices: 14234213--14234237 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14234203 ATTTTCAAAA
14234213 ATTTTATAAAATT
1 ATTTTATAAAATT
14234226 ATTTTATAAAAT
1 ATTTTATAAAAT
14234238 CTCATTTTCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
ATTTTATAAAATT
Found at i:14235451 original size:28 final size:29
Alignment explanation
Indices: 14235393--14235456 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
14235383 ACAAATTTTT
* ** *
14235393 AAAAATTACACTTTTGCCCCTGTAAAGTG
1 AAAAATTACACTTTTACCCCTAAAAACTG
*
14235422 AAAAATTACATTTTTACCCC-AAAAACTG
1 AAAAATTACACTTTTACCCCTAAAAACTG
14235450 AAAAATT
1 AAAAATT
14235457 GCCCATAGAC
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 12 0.40
29 18 0.60
ACGTcount: A:0.44, C:0.19, G:0.08, T:0.30
Consensus pattern (29 bp):
AAAAATTACACTTTTACCCCTAAAAACTG
Found at i:14238015 original size:20 final size:19
Alignment explanation
Indices: 14237992--14238045 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 19
14237982 TAAATATAAA
14237992 TAACATAAAACT-AACATTAT
1 TAACATAAAA-TAAACATT-T
*
14238012 TAACTTAAAATAAACATTT
1 TAACATAAAATAAACATTT
* *
14238031 AAACATAAATTAAAC
1 TAACATAAAATAAAC
14238046 TAAACTAATA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
19 14 0.48
20 15 0.52
ACGTcount: A:0.57, C:0.13, G:0.00, T:0.30
Consensus pattern (19 bp):
TAACATAAAATAAACATTT
Found at i:14238395 original size:22 final size:23
Alignment explanation
Indices: 14238363--14238409 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 23
14238353 ATATAGAGTT
14238363 ATTTGGGCTTA-ATTTTGATAGTA
1 ATTTGGGCTTAGATTTTG-TAGTA
*
14238386 ATTT-GGCTTAGTTTTTGTAGTA
1 ATTTGGGCTTAGATTTTGTAGTA
14238408 AT
1 AT
14238410 GCATAGCAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 13 0.59
23 9 0.41
ACGTcount: A:0.23, C:0.04, G:0.21, T:0.51
Consensus pattern (23 bp):
ATTTGGGCTTAGATTTTGTAGTA
Found at i:14248383 original size:16 final size:16
Alignment explanation
Indices: 14248352--14248391 Score: 55
Period size: 15 Copynumber: 2.5 Consensus size: 16
14248342 AAAACCAGTC
*
14248352 AAAAGAAGGAAGAG-A
1 AAAAGAAAGAAGAGAA
14248367 AAAAGAAAGATAGAGAA
1 AAAAGAAAGA-AGAGAA
14248384 AAAAGAAA
1 AAAAGAAA
14248392 AGTATTTAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 9 0.41
16 4 0.18
17 9 0.41
ACGTcount: A:0.72, C:0.00, G:0.25, T:0.03
Consensus pattern (16 bp):
AAAAGAAAGAAGAGAA
Found at i:14252527 original size:15 final size:15
Alignment explanation
Indices: 14252507--14252535 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
14252497 TTCAAGTACA
14252507 AATAATTATAGATAC
1 AATAATTATAGATAC
14252522 AATAATTATAGATA
1 AATAATTATAGATA
14252536 AAACAAGATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.03, G:0.07, T:0.34
Consensus pattern (15 bp):
AATAATTATAGATAC
Found at i:14264264 original size:332 final size:331
Alignment explanation
Indices: 14263637--14264628 Score: 1338
Period size: 332 Copynumber: 3.0 Consensus size: 331
14263627 TGTGGATCAA
* * * * *
14263637 ATGGAAACCTAATGTTGATCACTTATGTGTTTGGTTATGTCCTTCGGAAGTGCCTCGTTGTAATC
1 ATGGAAACCTAGTGTTGATCACTTATGTGTTTGGTTATGT-CTTTGAAAGTGCATCTTTGTAATC
* * * *
14263702 CAACTAGGATTAAAATATAGTATAGCTCATTGCTATTTTATTGTG-TACCTAGATCATTCCATGG
65 CAACTAAGATTAAGATATAGTATAGCTCGTTGCTATTTTATTGTGTTA-CGAGATCATTCCATGG
*
14263766 GTTATAGATTTTATTATTCAAGTGGAGGTGGTAAAATTGTTGAGGCAAAAACAAATAATTTTTTG
129 GTTATAGATTTTATTATTCAAGTGGAGGTTGTAAAATTGTTGAGGCAAAAACAAATAATTTTTTG
* *** **
14263831 GAGTTAGATCTCATTGATACTAATTGCTCTTAA-TATAGAGATAGAGGGGAGCATACTGTGATGA
194 GAGTTAGATGTGGCTGATACTAATTGCTCTTAAGT-TAGAGATAGAGGGGAGCATACTGTGACAA
* * *
14263895 TAAGTATTCCTATACCCATATAAAAGGATACCGTGGCACACAAT-AGTTAGGGAACATAATCCT-
258 TAAATATTCCTATACCCATACAAAAGGATATCGTGGCACAC-ATCAGTT-GGGAACATAATCCTC
14263958 GTTCAACTAAG
321 GTTCAACTAAG
* *
14263969 ATGGATACCTAGTGCTGATCACTTATGTGTTTGGTTATGTCTTTTGAAAGTGCATCTTTGTAATC
1 ATGGAAACCTAGTGTTGATCACTTATGTGTTTGGTTATGTC-TTTGAAAGTGCATCTTTGTAATC
* * *
14264034 CAACTAAGATTAAGATATAGTATAGCTCGTTGCTATTTTGTTGTGTTTCGAGATCATTCTATGGG
65 CAACTAAGATTAAGATATAGTATAGCTCGTTGCTATTTTATTGTGTTACGAGATCATTCCATGGG
* * * * * **
14264099 CTATAGATTTTATTATTCAAGTGAAGGTTGTAAAATTGTTGAGACAAAAATAAATAACTTTTTAC
130 TTATAGATTTTATTATTCAAGTGGAGGTTGTAAAATTGTTGAGGCAAAAACAAATAATTTTTTGG
* * * * *
14264164 AATTAGATGTGGCTGATACTAATTGTTCTTAAGTTAGAGATAGAGGAGAGCATACTATAACAATA
195 AGTTAGATGTGGCTGATACTAATTGCTCTTAAGTTAGAGATAGAGGGGAGCATACTGTGACAATA
* * *
14264229 AATATTCTTATACCCATACAAAAGGATATCGTGGCACATATCAGTTTGTGAACATAAT-CTCGTT
260 AATATTCCTATACCCATACAAAAGGATATCGTGGCACACATCAG-TTGGGAACATAATCCTCGTT
14264293 CAACTAAG
324 CAACTAAG
* * * *
14264301 ATGGAAACTTAGTGTTGATCACTTAGGTGTTTAGTTATGTCTTTCAGAAGTGCATCTTTGTAATC
1 ATGGAAACCTAGTGTTGATCACTTATGTGTTTGGTTATGTCTTTGA-AAGTGCATCTTTGTAATC
*
14264366 CAACTAAGATTAAGATATAGCATAGCTCGTTGCTA-TTTATTGTG-TACGAAGATCATTCCATGG
65 CAACTAAGATTAAGATATAGTATAGCTCGTTGCTATTTTATTGTGTTACG-AGATCATTCCATGG
14264429 GTTATAGATTTTATTATTCAAGTGGAGG-TGATAAAATTGTTGAGGCAAAAACAAATAATTTTTT
129 GTTATAGATTTTATTATTCAAGTGGAGGTTG-TAAAATTGTTGAGGCAAAAACAAATAATTTTTT
* * * *
14264493 GGAGTTAGATGTGGCTAATACTAGTTGCTCTTAAGTTAGAGATAAAGGGGAGCATATTGTGACAA
193 GGAGTTAGATGTGGCTGATACTAATTGCTCTTAAGTTAGAGATAGAGGGGAGCATACTGTGACAA
* * * * *
14264558 TACATATTCGTAT-CCCATGCAAAAGGATATCGTGACACACATCAGTTGAGGAACATAAT-CTCA
258 TAAATATTCCTATACCCATACAAAAGGATATCGTGGCACACATCAGTTG-GGAACATAATCCTCG
14264621 TTCAACTA
322 TTCAACTA
14264629 GTTCATGATG
Statistics
Matches: 578, Mismatches: 72, Indels: 22
0.86 0.11 0.03
Matches are distributed among these distances:
329 3 0.01
330 54 0.09
331 151 0.26
332 366 0.63
333 4 0.01
ACGTcount: A:0.32, C:0.13, G:0.20, T:0.35
Consensus pattern (331 bp):
ATGGAAACCTAGTGTTGATCACTTATGTGTTTGGTTATGTCTTTGAAAGTGCATCTTTGTAATCC
AACTAAGATTAAGATATAGTATAGCTCGTTGCTATTTTATTGTGTTACGAGATCATTCCATGGGT
TATAGATTTTATTATTCAAGTGGAGGTTGTAAAATTGTTGAGGCAAAAACAAATAATTTTTTGGA
GTTAGATGTGGCTGATACTAATTGCTCTTAAGTTAGAGATAGAGGGGAGCATACTGTGACAATAA
ATATTCCTATACCCATACAAAAGGATATCGTGGCACACATCAGTTGGGAACATAATCCTCGTTCA
ACTAAG
Found at i:14270973 original size:16 final size:16
Alignment explanation
Indices: 14270909--14270958 Score: 57
Period size: 16 Copynumber: 3.2 Consensus size: 16
14270899 ATGAAAATTT
* *
14270909 ATTAATTAATTGATAT
1 ATTAATTAATTTATAA
*
14270925 ATTATTTAATTTATAA
1 ATTAATTAATTTATAA
*
14270941 ATTAA-TAATTTATTA
1 ATTAATTAATTTATAA
14270956 ATT
1 ATT
14270959 TATACATTAA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
15 12 0.41
16 17 0.59
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (16 bp):
ATTAATTAATTTATAA
Found at i:14271686 original size:16 final size:16
Alignment explanation
Indices: 14271667--14271724 Score: 64
Period size: 16 Copynumber: 3.7 Consensus size: 16
14271657 CATGAAAATT
*
14271667 TATTAATTAATTGATA
1 TATTAATTAATTTATA
* *
14271683 TATTATTTAATTTACA
1 TATTAATTAATTTATA
*
14271699 AATTAA-TAATTTATA
1 TATTAATTAATTTATA
*
14271714 CATTAATTAAT
1 TATTAATTAAT
14271725 AAAAAATTAA
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
15 13 0.38
16 21 0.62
ACGTcount: A:0.45, C:0.03, G:0.02, T:0.50
Consensus pattern (16 bp):
TATTAATTAATTTATA
Found at i:14272458 original size:15 final size:15
Alignment explanation
Indices: 14272438--14272483 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 15
14272428 ATATATTATT
14272438 TAATTTATAAATTAA
1 TAATTTATAAATTAA
*
14272453 TAATTTATACATTAA
1 TAATTTATAAATTAA
* * *
14272468 TTATTAAAAAATTAA
1 TAATTTATAAATTAA
14272483 T
1 T
14272484 TTATCAATGT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (15 bp):
TAATTTATAAATTAA
Found at i:14272920 original size:25 final size:24
Alignment explanation
Indices: 14272873--14272920 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
14272863 TGTGTGTGTA
*
14272873 TATTATTTTGATATATAAGGAGAT
1 TATTAATTTGATATATAAGGAGAT
14272897 TATTAATTT-ATATATCAAGTGAGA
1 TATTAATTTGATATAT-AAG-GAGA
14272921 CCTATGTGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 6 0.29
24 11 0.52
25 4 0.19
ACGTcount: A:0.40, C:0.02, G:0.15, T:0.44
Consensus pattern (24 bp):
TATTAATTTGATATATAAGGAGAT
Found at i:14273004 original size:749 final size:754
Alignment explanation
Indices: 14270768--14273753 Score: 4727
Period size: 748 Copynumber: 4.0 Consensus size: 754
14270758 GAAAATCACC
* * * *
14270768 ATAAATTGAAATTATTATTGCCTTCTTTTTTTTTTAAAGTTAATTAATTATATATTTGATATCGA
1 ATAAATTGAAATTATTATTGCCTTC-CTATTTTCTAAGGTTAATTAATTATATATTTGATATCGA
* * *
14270833 AATTGTAAGGAAATTGTTGATTTAATATTTAAAGAAAAAATTCTACAAATTAAGACATTTAAAAT
65 AATTGTAACGAAATTGTTGATTTAATATTTAAAGAAAAAATTCTACAAATTAAGACATTTGAGAT
14270898 CATGAAAATTTATTAATTAATTGATATATTATTTAATTTATAAATTAATAATTTATTAATTTATA
130 CATGAAAATTTATTAATTAATTGATATATTATTTAATTTATAAATT-ATAA---ATTAATTTATA
* *
14270963 CATTAATTAATAAAAAATTAATTTATCAATGTATTTTCTTTTTTCAAAACATTGAATGCAATACA
191 CATTAATTAATAAAAAATTAATTTATCAATGTATTTTCTTTTTTCAAAACATTGAACGTAATACA
*
14271028 TGTATCATAATGTGATTATATGAATATTATCTAATTATCGAATTATAAATTATCATTATTCGAGT
256 TGTATCATAATGTGATTATACGAATATTATCTAATTATCGAATTATAAATTATCATTATTCGAGT
* * * * * *
14271093 CGAGTAATTTATTGAAAATGTCGTGAGAAATGATAAAGAAGATAAATTGAAAACGATAGTTCTGT
321 CGAGCAAATTATTGAAAATGTCGTGGGAAATGACAAAGAAGATAAGTTGAAAACGATAGTTCTAT
* * * * *
14271158 ACTGGACCCTATCTCACATAAAGATGCGCTCAAAGCAACAATTATATTATTTAATTTTCTCTTGG
386 ACTGGACCCTATCTCACACAAAGATGCACTCAAAGCAACAATCACATTATTTAATTTTCTCTTGC
* * * * *
14271223 AATACGAGAACATTATACCAAAACTTCTTAATGCACTCAGAAAAGTTAGAGATGAGGTCCAAACA
451 AATACGAGAACACTATATCAGAACTTCTTAATGCACTAAGAAAAGTTAGAGATGAGGTCCAAAAA
*
14271288 GATATCAATTTCAAGAAGAAACAAATAACACT--AGTCATATTTTACAAATGTCTCCTAATTGAG
516 GACATCAATTTCAAGAAGAAACAAATAACACTAGAGTCATATTTTACAAATGTCTCCTAATTGAG
*
14271351 TCTTGTGTGTGTGTGTGTGTGTATATATTATTTTGATGA-ATAAGGAGATTATTAATTTATATAT
581 TCATGTGTGTGTGTGTGTGTG--TATATTATTTTGAT-ATATAAGGAGATTATTAATTTATATAT
*
14271415 CAAGTGAGACCTACGTGTTATTTTTAAAATGTATTATCTTGTTAATTTAGTGAATTATTAATTTA
643 CAAGTGAGACCTATGTGTTATTTTTAAAATGTATTATCTTGTTAATTTAGTGAATTATTAATTTA
* * *
14271480 CTACGTTAGTCTCAAATTGGGATCGATCAAAAATATTATTTAATTGCG
708 CTACGTTGGTCTCAAATT-GGATCGATCAAAAATATTATTTAATCGTG
*
14271528 ATAAATTGAAATTATTATTGCCTTCCAATTTTCTAAGGTTAATTAATTATATATTTGATATCGAA
1 ATAAATTGAAATTATTATTGCCTTCCTATTTTCTAAGGTTAATTAATTATATATTTGATATCGAA
*
14271593 ATTGTAACGAAATTGTTGATTTAATAGTTAAAGAAAAAATTCTACAAATTAAGACATTTGAGATC
66 ATTGTAACGAAATTGTTGATTTAATATTTAAAGAAAAAATTCTACAAATTAAGACATTTGAGATC
*
14271658 ATGAAAATTTATTAATTAATTGATATATTATTTAATTTACAAA-T-T-AA-TAATTTATACATTA
131 ATGAAAATTTATTAATTAATTGATATATTATTTAATTTATAAATTATAAATTAATTTATACATTA
14271719 ATTAATAAAAAATTAATTTATCAATGTATTTTCTTTTTTCAAAACATTGAACGTAATACATGTAT
196 ATTAATAAAAAATTAATTTATCAATGTATTTTCTTTTTTCAAAACATTGAACGTAATACATGTAT
* * *
14271784 CATGATGTGATTATACGAATATTATCTAATTATTGAATTATAAATTATCATTATTCGAGTGGAGC
261 CATAATGTGATTATACGAATATTATCTAATTATCGAATTATAAATTATCATTATTCGAGTCGAGC
*
14271849 AAATTATTGAAAATGTTGT-GGAAATGACAAAGAAGATAAGTTGAAAACGATAGTTCTATACTGG
326 AAATTATTGAAAATGTCGTGGGAAATGACAAAGAAGATAAGTTGAAAACGATAGTTCTATACTGG
* * *
14271913 ACCTTATCTCACACAAAGATGCAGTCAAAGCAACAATTACATTATTTAATTTTCTCTTGCAATAC
391 ACCCTATCTCACACAAAGATGCACTCAAAGCAACAATCACATTATTTAATTTTCTCTTGCAATAC
*
14271978 GAGAACACTATATCAGAACTTCTTAATGCACTAAGAAAAGTTAGAGATGAGGTCTAAAAAGACAT
456 GAGAACACTATATCAGAACTTCTTAATGCACTAAGAAAAGTTAGAGATGAGGTCCAAAAAGACAT
14272043 CAATTTCAAGAAGAAACAAATAACACTAGAGTCATATTTTACAAATGTCTCCTAATTGAGTC-T-
521 CAATTTCAAGAAGAAACAAATAACACTAGAGTCATATTTTACAAATGTCTCCTAATTGAGTCATG
** * * * *
14272106 TGTGTGCATGTGTGTATATATTATTTTGATGTATAAGAAGATTATTAATTTATATATCAAGTAAG
586 TGTGTGTGTGTGTGTGTATATTATTTTGATATATAAGGAGATTATTAATTTATATATCAAGTGAG
* * * *
14272171 CCCTATGTGTTATTTTTAAAATATAGTATCTTGTTAATTTAGTGAATTATTAATTTACTATGTTG
651 ACCTATGTGTTATTTTTAAAATGTATTATCTTGTTAATTTAGTGAATTATTAATTTACTACGTTG
14272236 GTCTCAAATTGTGATCGATCAAAAATATTATTTAATCGTG
716 GTCTCAAATTG-GATCGATCAAAAATATTATTTAATCGTG
14272276 ATAAATTGAAATTATTATTGCCTTCCTATTTTCTAAGGTTAATTAATTATATATTTGATATCGAA
1 ATAAATTGAAATTATTATTGCCTTCCTATTTTCTAAGGTTAATTAATTATATATTTGATATCGAA
*
14272341 ATTGTAACAAAATTGTTGATTTAATATTTAAAGAAAAAATTCTACAAATTAAGACATTTGAGATC
66 ATTGTAACGAAATTGTTGATTTAATATTTAAAGAAAAAATTCTACAAATTAAGACATTTGAGATC
*
14272406 ATGAAAATTTATTAATCAATTGATATATTATTTAATTTATAAA-T-T-AA-TAATTTATACATTA
131 ATGAAAATTTATTAATTAATTGATATATTATTTAATTTATAAATTATAAATTAATTTATACATTA
* *
14272467 ATTATTAAAAAATTAATTTATCAATGTATTTTCTTTTTCCAAAACATTGAACGTAATACATGTAT
196 ATTAATAAAAAATTAATTTATCAATGTATTTTCTTTTTTCAAAACATTGAACGTAATACATGTAT
* *
14272532 CATAATGTGATTATACGAGTATTATTTAATTATCGAATTATAAATTATCATTATTCGAGTCGAGC
261 CATAATGTGATTATACGAATATTATCTAATTATCGAATTATAAATTATCATTATTCGAGTCGAGC
*
14272597 AAATTATTGAAAATGTCGTGGGAAATGACAAAGAAGATAAGTTGAAAACGATAGTTCTGTACTGG
326 AAATTATTGAAAATGTCGTGGGAAATGACAAAGAAGATAAGTTGAAAACGATAGTTCTATACTGG
*
14272662 ACCCTATTTCACACAAAGATGCACTCAAAGCAACAATCACATTATTTAATTTTCTCTTGCAATAC
391 ACCCTATCTCACACAAAGATGCACTCAAAGCAACAATCACATTATTTAATTTTCTCTTGCAATAC
**
14272727 GAGAACACTATATCAGAACTTCTTAATGCACTAAGAAAAGTTAGAGATGAGGTCCAAGGAGACAT
456 GAGAACACTATATCAGAACTTCTTAATGCACTAAGAAAAGTTAGAGATGAGGTCCAAAAAGACAT
*
14272792 CAATTTCAAGAAGAAACAAATAACACTAGAATCATATTTTACAAATGTCTCCTAATTGAGTC-T-
521 CAATTTCAAGAAGAAACAAATAACACTAGAGTCATATTTTACAAATGTCTCCTAATTGAGTCATG
14272855 TGTGTGTGTGTGTGTGTATATTATTTTGATATATAAGGAGATTATTAATTTATATATCAAGTGAG
586 TGTGTGTGTGTGTGTGTATATTATTTTGATATATAAGGAGATTATTAATTTATATATCAAGTGAG
*
14272920 ACCTATGTGTTATTTTTAAAATGTATTATCTTGTTAATTTAGTGAATTATTAATTTCCTACGTTG
651 ACCTATGTGTTATTTTTAAAATGTATTATCTTGTTAATTTAGTGAATTATTAATTTACTACGTTG
*
14272985 GTCTCAAATTGGCATCGATCAAAAATATTATTTAATGGTG
716 GTCTCAAATTGG-ATCGATCAAAAATATTATTTAATCGTG
* **
14273025 ATAAATTGAAATTGTTATTGCCTTTTTATTTTCTAAGGTTAATTAATTATATATTTGATATCGAA
1 ATAAATTGAAATTATTATTGCCTTCCTATTTTCTAAGGTTAATTAATTATATATTTGATATCGAA
*
14273090 ATTGTAACGAAATTGTTGATTTAATATTTGAA-AAAAAATTCTACAAATTAAGACATTTTG-GAT
66 ATTGTAACGAAATTGTTGATTTAATATTTAAAGAAAAAATTCTACAAATTAAGACA-TTTGAGAT
* *
14273153 CATGAAAATTTATTAATTAATCGATATATTGTTTAATTTATAAATTAATAAAAAATTAATTTATA
130 CATGAAAATTTATTAATTAATTGATATATTATTTAATTTATAAATT-AT---AAATTAATTTATA
*
14273218 CATTAATTAATAAAAAATTAATTTATCAATGTATTTTCTTTTTTCAAAACATTGAACGTAATACT
191 CATTAATTAATAAAAAATTAATTTATCAATGTATTTTCTTTTTTCAAAACATTGAACGTAATACA
* *
14273283 TGTATCATATTGTGATTATACGAATATTATCTAATTATCGAATTATAAATTATCATTATTCGAGA
256 TGTATCATAATGTGATTATACGAATATTATCTAATTATCGAATTATAAATTATCATTATTCGAGT
* * * * * *
14273348 CAAGCAAATTATTGAGAATGTTGCGGGAAATGACAAAGAAAATGAAGTTGAAAATGATAGTTCTA
321 CGAGCAAATTATTGAAAATGTCGTGGGAAATGACAAAGAAGAT-AAGTTGAAAACGATAGTTCTA
*
14273413 TACTGGACCCTATCTCACACAAAGATGCACTCAAAGCAACAATCACATTACTTAATTTTCTCTTG
385 TACTGGACCCTATCTCACACAAAGATGCACTCAAAGCAACAATCACATTATTTAATTTTCTCTTG
* * * *
14273478 TAATACGAGAACAGTATA-CTAGAACTTCTTAATGCATTAAGAAAAGTTAGAGATGAGGTCCAAG
450 CAATACGAGAACACTATATC-AGAACTTCTTAATGCACTAAGAAAAGTTAGAGATGAGGTCCAAA
* * * * **
14273542 AAGACATCAATTTCAAGAAGAAACAAGTAACATTGGAGTCATATTTTACAAAGGTCTTGTAATTG
514 AAGACATCAATTTCAAGAAGAAACAAATAACACTAGAGTCATATTTTACAAATGTCTCCTAATTG
* * *
14273607 AGTCATGTTTGTGTGTGTGTGTGTGTATTATTTTGATGTATAAGGAGATTATTAATTTATATAT-
579 AGTCATGTGTGTGTGTGTGTGTGTATATTATTTTGATATATAAGGAGATTATTAATTTATATATC
** * * * *
14273671 AAGATG-GCATATATGTGTTATTTTTAAAATGTATTATCATATAAATTTAATGAATTATTAATTT
644 AAG-TGAG-ACCTATGTGTTATTTTTAAAATGTATTATCTTGTTAATTTAGTGAATTATTAATTT
*
14273735 ACTACATTGGTCTCAAATT
707 ACTACGTTGGTCTCAAATT
14273754 TTATTAAGTA
Statistics
Matches: 2075, Mismatches: 130, Indels: 43
0.92 0.06 0.02
Matches are distributed among these distances:
747 1 0.00
748 535 0.26
749 482 0.23
750 198 0.10
751 156 0.08
752 34 0.02
755 3 0.00
756 172 0.08
757 202 0.10
758 6 0.00
759 261 0.13
760 25 0.01
ACGTcount: A:0.39, C:0.10, G:0.13, T:0.38
Consensus pattern (754 bp):
ATAAATTGAAATTATTATTGCCTTCCTATTTTCTAAGGTTAATTAATTATATATTTGATATCGAA
ATTGTAACGAAATTGTTGATTTAATATTTAAAGAAAAAATTCTACAAATTAAGACATTTGAGATC
ATGAAAATTTATTAATTAATTGATATATTATTTAATTTATAAATTATAAATTAATTTATACATTA
ATTAATAAAAAATTAATTTATCAATGTATTTTCTTTTTTCAAAACATTGAACGTAATACATGTAT
CATAATGTGATTATACGAATATTATCTAATTATCGAATTATAAATTATCATTATTCGAGTCGAGC
AAATTATTGAAAATGTCGTGGGAAATGACAAAGAAGATAAGTTGAAAACGATAGTTCTATACTGG
ACCCTATCTCACACAAAGATGCACTCAAAGCAACAATCACATTATTTAATTTTCTCTTGCAATAC
GAGAACACTATATCAGAACTTCTTAATGCACTAAGAAAAGTTAGAGATGAGGTCCAAAAAGACAT
CAATTTCAAGAAGAAACAAATAACACTAGAGTCATATTTTACAAATGTCTCCTAATTGAGTCATG
TGTGTGTGTGTGTGTGTATATTATTTTGATATATAAGGAGATTATTAATTTATATATCAAGTGAG
ACCTATGTGTTATTTTTAAAATGTATTATCTTGTTAATTTAGTGAATTATTAATTTACTACGTTG
GTCTCAAATTGGATCGATCAAAAATATTATTTAATCGTG
Found at i:14273215 original size:23 final size:25
Alignment explanation
Indices: 14273185--14273243 Score: 86
Period size: 27 Copynumber: 2.4 Consensus size: 25
14273175 GATATATTGT
14273185 TTAATTTAT-A-AATTAATAAAAAA
1 TTAATTTATAATAATTAATAAAAAA
14273208 TTAATTTATACATTAATTAATAAAAAA
1 TTAATTTATA-A-TAATTAATAAAAAA
14273235 TTAATTTAT
1 TTAATTTAT
14273244 CAATGTATTT
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
23 9 0.28
25 1 0.03
27 22 0.69
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (25 bp):
TTAATTTATAATAATTAATAAAAAA
Found at i:14278488 original size:10 final size:11
Alignment explanation
Indices: 14278470--14278506 Score: 51
Period size: 10 Copynumber: 3.5 Consensus size: 11
14278460 GTGGCTGAAA
14278470 TTGATGATATT
1 TTGATGATATT
14278481 TT-ATGATATT
1 TTGATGATATT
*
14278491 TTGGTGATA-T
1 TTGATGATATT
14278501 TTGATG
1 TTGATG
14278507 TTTGGTGAGG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
10 16 0.70
11 7 0.30
ACGTcount: A:0.24, C:0.00, G:0.22, T:0.54
Consensus pattern (11 bp):
TTGATGATATT
Found at i:14284561 original size:23 final size:23
Alignment explanation
Indices: 14284535--14284585 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
14284525 GTTTAGAGTT
* *
14284535 TGTGAAACGGCATGTTGGGAATG
1 TGTGAAACGACATGGTGGGAATG
*
14284558 TGTGACACGACATGGTGGGAATG
1 TGTGAAACGACATGGTGGGAATG
14284581 TGTGA
1 TGTGA
14284586 TATGGCTGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.25, C:0.10, G:0.39, T:0.25
Consensus pattern (23 bp):
TGTGAAACGACATGGTGGGAATG
Found at i:14284627 original size:57 final size:57
Alignment explanation
Indices: 14284558--14284761 Score: 241
Period size: 57 Copynumber: 3.6 Consensus size: 57
14284548 GTTGGGAATG
* *
14284558 TGTGACACGACATGGTGGGAATGTGTGATATGGCTGTGACACAACAGGGTTTAGAG-T
1 TGTGACACGACATGGTGGGAATGTGTGACACGGCTGTGACAC-ACAGGGTTTAGAGTT
* *
14284615 TGTGACACGACATGGTTGGAATGTGTGACACGGCTGTGACATGACAGGGTTTAGAGTT
1 TGTGACACGACATGGTGGGAATGTGTGACACGGCTGTGACA-CACAGGGTTTAGAGTT
* * * * **
14284673 TGTGACAC-ACCTAGTGGGAATGTGTGACACGGCTATGACACGCTAGCTTTTAGAGTT
1 TGTGACACGACATGGTGGGAATGTGTGACACGGCTGTGACACAC-AGGGTTTAGAGTT
* * **
14284730 TGTGACACGCCATGGAGGGAATCCGTGACACG
1 TGTGACACGACATGGTGGGAATGTGTGACACG
14284762 TCAAAGTTCA
Statistics
Matches: 125, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
56 1 0.01
57 98 0.78
58 26 0.21
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (57 bp):
TGTGACACGACATGGTGGGAATGTGTGACACGGCTGTGACACACAGGGTTTAGAGTT
Found at i:14284855 original size:23 final size:23
Alignment explanation
Indices: 14284826--14284901 Score: 68
Period size: 23 Copynumber: 3.3 Consensus size: 23
14284816 TCAGAGTTCA
14284826 TGACACACCATGGAAGGAATCTG
1 TGACACACCATGGAAGGAATCTG
* * *
14284849 TGACACACCAATGTTCAAAG-TTC-G
1 TGACACACC-ATG--GAAGGAATCTG
14284873 TGACACACCAT-GAAGGGAATCTG
1 TGACACACCATGGAA-GGAATCTG
14284896 TGACAC
1 TGACAC
14284902 GCCAGTGTTC
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
20 2 0.05
21 1 0.02
22 2 0.05
23 18 0.44
24 13 0.32
25 2 0.05
26 3 0.07
ACGTcount: A:0.34, C:0.24, G:0.22, T:0.20
Consensus pattern (23 bp):
TGACACACCATGGAAGGAATCTG
Found at i:14284962 original size:141 final size:141
Alignment explanation
Indices: 14284726--14285058 Score: 432
Period size: 141 Copynumber: 2.4 Consensus size: 141
14284716 TAGCTTTTAG
* * * * **
14284726 AGTTTGTGACACGCCATGGAGGGAATCCGTGACACGTCAAAGTTCAGAGTTGGTGACATGCCATG
1 AGTTTGTGACACGCCATGGAGGGAATCTGTGACACGACAGAGTTCAGAGTTCGTGACACACCATG
*
14284791 GAAGGAATCTATGACACGCCAGCGTTCAGAGTTCATGACACACCATGGAAGGAATCTGTGACACA
66 GAAGGAATCTATGACACGCCAGAGTTCAGAGTTCATGACACACCATGGAAGGAATCTGTGACACA
**
14284856 CCAATGTTCAA
131 CCAACATTCAA
* * * * *
14284867 AGTTCGTGACACACCATGAAGGGAATCTGTGACACGCCAGTGTTCAGAGTTCGTGACACACCATG
1 AGTTTGTGACACGCCATGGAGGGAATCTGTGACACGACAGAGTTCAGAGTTCGTGACACACCATG
* * * * * * *
14284932 GAGGGACTCTGTGACACGCTAGAGTTCAGAGTTCGTGACACGCCATGGAAGGAATCTGTGACACG
66 GAAGGAATCTATGACACGCCAGAGTTCAGAGTTCATGACACACCATGGAAGGAATCTGTGACACA
*
14284997 CCAACATTCAG
131 CCAACATTCAA
* * * *
14285008 AGTTTATGACACGCCGTGGAGGGAGTCTGTGACACGACAGGGTTCAGAGTT
1 AGTTTGTGACACGCCATGGAGGGAATCTGTGACACGACAGAGTTCAGAGTT
14285059 TGTCAGACTT
Statistics
Matches: 163, Mismatches: 29, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
141 163 1.00
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.21
Consensus pattern (141 bp):
AGTTTGTGACACGCCATGGAGGGAATCTGTGACACGACAGAGTTCAGAGTTCGTGACACACCATG
GAAGGAATCTATGACACGCCAGAGTTCAGAGTTCATGACACACCATGGAAGGAATCTGTGACACA
CCAACATTCAA
Found at i:14285075 original size:47 final size:47
Alignment explanation
Indices: 14284724--14285058 Score: 386
Period size: 47 Copynumber: 7.1 Consensus size: 47
14284714 GCTAGCTTTT
* * * *
14284724 AGAGTTTGTGACACGCCATGGAGGGAATCCGTGACACGTCAAAGTTC
1 AGAGTTCGTGACACGCCATGGAGGGAATCTGTGACACGCCAGAGTTC
* * * * *
14284771 AGAGTTGGTGACATGCCATGGAAGGAATCTATGACACGCCAGCGTTC
1 AGAGTTCGTGACACGCCATGGAGGGAATCTGTGACACGCCAGAGTTC
* * * *
14284818 AGAGTTCATGACACACCATGGAAGGAATCTGTGACACACCA-ATGTTC
1 AGAGTTCGTGACACGCCATGGAGGGAATCTGTGACACGCCAGA-GTTC
* * * *
14284865 AAAGTTCGTGACACACCATGAAGGGAATCTGTGACACGCCAGTGTTC
1 AGAGTTCGTGACACGCCATGGAGGGAATCTGTGACACGCCAGAGTTC
* * *
14284912 AGAGTTCGTGACACACCATGGAGGGACTCTGTGACACGCTAGAGTTC
1 AGAGTTCGTGACACGCCATGGAGGGAATCTGTGACACGCCAGAGTTC
* *
14284959 AGAGTTCGTGACACGCCATGGAAGGAATCTGTGACACGCCA-ACATTC
1 AGAGTTCGTGACACGCCATGGAGGGAATCTGTGACACGCCAGA-GTTC
** * * * *
14285006 AGAGTTTATGACACGCCGTGGAGGGAGTCTGTGACACGACAGGGTTC
1 AGAGTTCGTGACACGCCATGGAGGGAATCTGTGACACGCCAGAGTTC
14285053 AGAGTT
1 AGAGTT
14285059 TGTCAGACTT
Statistics
Matches: 245, Mismatches: 39, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
46 1 0.00
47 244 1.00
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.21
Consensus pattern (47 bp):
AGAGTTCGTGACACGCCATGGAGGGAATCTGTGACACGCCAGAGTTC
Found at i:14285802 original size:31 final size:31
Alignment explanation
Indices: 14285739--14286065 Score: 431
Period size: 31 Copynumber: 10.5 Consensus size: 31
14285729 TGTGTCAGCG
* * **
14285739 TGGCGTGTTATAACATTTGAC-TTGATGCGCA
1 TGGCGTGTTACAACATTTTACGTT-ATATGCA
* *
14285770 TGACGTATTACAACATTTTACGTTATATGCA
1 TGGCGTGTTACAACATTTTACGTTATATGCA
*
14285801 TGGCGTGTTAAAACATTTTACGTTATATGCA
1 TGGCGTGTTACAACATTTTACGTTATATGCA
* * **
14285832 TGGCGTGTTACCATATTTTATATTATATGCA
1 TGGCGTGTTACAACATTTTACGTTATATGCA
*
14285863 TGGTGTGTTACAACATTTTACGTTATATGCA
1 TGGCGTGTTACAACATTTTACGTTATATGCA
*
14285894 TGGCGTGTTACCACATTTTACGTTATATGCA
1 TGGCGTGTTACAACATTTTACGTTATATGCA
* *
14285925 TGGGGTGCTACAACATTTTACGTTATATGCA
1 TGGCGTGTTACAACATTTTACGTTATATGCA
* *
14285956 TGGCATGTTACCACATTTTACGTTATATGCA
1 TGGCGTGTTACAACATTTTACGTTATATGCA
* **
14285987 TGGTGTGTTACAACATTTTACGTTGCATGCA
1 TGGCGTGTTACAACATTTTACGTTATATGCA
* *
14286018 TGGTGTGTTACCACATTTTACGTTATATGCA
1 TGGCGTGTTACAACATTTTACGTTATATGCA
*
14286049 TGGCGTGTTACCACATT
1 TGGCGTGTTACAACATT
14286066 ATGGGTTAAC
Statistics
Matches: 258, Mismatches: 37, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
31 256 0.99
32 2 0.01
ACGTcount: A:0.25, C:0.16, G:0.20, T:0.39
Consensus pattern (31 bp):
TGGCGTGTTACAACATTTTACGTTATATGCA
Found at i:14287734 original size:145 final size:145
Alignment explanation
Indices: 14287456--14287743 Score: 371
Period size: 145 Copynumber: 2.0 Consensus size: 145
14287446 GGCAGTGAAA
*
14287456 AGCCAATAAGGACGATTTTAAAGGTTTGTGTTCAACAATTCAATATGTGATTATCGAATAACAAA
1 AGCCAATAAGGACGATTATAAAGGTTTGTGTTCAACAATTCAATATGTGATTATCGAATAACAAA
* * ** * * * * * * * *
14287521 TCTGTGTTTGTAGTTGGACCATGTGACGATAGCTTCACAACCACCGATAGGTCCTCTTTAGACTC
66 TCTGTGTCTGCAGTTGGACCATACGACGACAACTCCACAACCACCGAGAGGTCATCTTCAAACGC
14287586 ACAGTGCTAACGAGG
131 ACAGTGCTAACGAGG
* * * * *
14287601 AGCCAATAAGGATGGTTATAATGGTTTGTTTTCAACAACTTC-ATATGTGATTATCGAATAACAT
1 AGCCAATAAGGACGATTATAAAGGTTTGTGTTCAACAA-TTCAATATGTGATTATCGAATAACAA
* * *
14287665 ATCTGTGTCTGCAGTTGGACCATACGATGACAACTCCTCAACCACTGAGAGGTCATCTTCAAACG
65 ATCTGTGTCTGCAGTTGGACCATACGACGACAACTCCACAACCACCGAGAGGTCATCTTCAAACG
14287730 CACAGTGCTAACGA
130 CACAGTGCTAACGA
14287744 CCTGTCAATA
Statistics
Matches: 121, Mismatches: 21, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
145 118 0.98
146 3 0.02
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (145 bp):
AGCCAATAAGGACGATTATAAAGGTTTGTGTTCAACAATTCAATATGTGATTATCGAATAACAAA
TCTGTGTCTGCAGTTGGACCATACGACGACAACTCCACAACCACCGAGAGGTCATCTTCAAACGC
ACAGTGCTAACGAGG
Found at i:14287773 original size:145 final size:145
Alignment explanation
Indices: 14287456--14287808 Score: 338
Period size: 145 Copynumber: 2.4 Consensus size: 145
14287446 GGCAGTGAAA
* ** *
14287456 AGCCAATAAGGACGATTTTAA-AGGTTTGTGTTCAACAATTCAATATGTGATTATCGAATAACAA
1 AGCCAATAAGGATGATTAGAACA-GTTTGTATTCAACAATTCAATATGTGATTATCGAATAACAA
* * ** * * * * * * * *
14287520 ATCTGTGTTTGTAGTTGGACCATGTGACGATAGCTTCACAACCACCGATAGGTCCTCTTTAGACT
65 ATCTGTGTCTGCAGTTGGACCATACGACGACAACTCCACAACCACCGAGAGGTCATCTTCAAACG
**
14287585 CACAGTGCTAACGAGG
130 CACAGTGCTAACGACC
* * ** * *
14287601 AGCCAATAAGGATGGTTATAATGGTTTGTTTTCAACAACTTC-ATATGTGATTATCGAATAACAT
1 AGCCAATAAGGATGATTAGAACAGTTTGTATTCAACAA-TTCAATATGTGATTATCGAATAACAA
* * *
14287665 ATCTGTGTCTGCAGTTGGACCATACGATGACAACTCCTCAACCACTGAGAGGTCATCTTCAAACG
65 ATCTGTGTCTGCAGTTGGACCATACGACGACAACTCCACAACCACCGAGAGGTCATCTTCAAACG
14287730 CACAGTGCTAACGACC
130 CACAGTGCTAACGACC
* * * * *
14287746 TGTCAATAA-GATCGATTCGAACAGTTTGTATTCAACATTTTCACATATGT--TTATCGAGTAAC
1 AGCCAATAAGGAT-GATTAGAACAGTTTGTATTCAACA-ATTCA-ATATGTGATTATCGAATAAC
14287808 A
63 A
14287809 CATTAATTTC
Statistics
Matches: 169, Mismatches: 33, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
144 3 0.02
145 157 0.93
146 3 0.02
147 6 0.04
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30
Consensus pattern (145 bp):
AGCCAATAAGGATGATTAGAACAGTTTGTATTCAACAATTCAATATGTGATTATCGAATAACAAA
TCTGTGTCTGCAGTTGGACCATACGACGACAACTCCACAACCACCGAGAGGTCATCTTCAAACGC
ACAGTGCTAACGACC
Found at i:14290042 original size:93 final size:93
Alignment explanation
Indices: 14289925--14290117 Score: 269
Period size: 93 Copynumber: 2.1 Consensus size: 93
14289915 GGGGGTGCCA
* * **
14289925 TGTCACCCCATAATACAGCAAGAAGTCAGCGTGTCACCATAGAAATCTACATGCACTCAATGTGT
1 TGTCACCCCACAATACAGCAAGAAGTCAGCGTGTCACCACAGAAATCTACATGCACTCAACATGT
* * *
14289990 CACGCTAACTATCTGCTTCCACTCAGCG
66 CACACCAACTATCTGCTTCCACTCAACG
** * ** *
14290018 TGTCACCCCACAATATTGCAAGAAGTCAGCGTGTCACCACAGAAATTTGTATGCACTCAGCATGT
1 TGTCACCCCACAATACAGCAAGAAGTCAGCGTGTCACCACAGAAATCTACATGCACTCAACATGT
14290083 CACACCAACTATCTGCTTCCACTCAACG
66 CACACCAACTATCTGCTTCCACTCAACG
14290111 TGTCACC
1 TGTCACC
14290118 ACAAGATGGG
Statistics
Matches: 87, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 87 1.00
ACGTcount: A:0.30, C:0.31, G:0.16, T:0.24
Consensus pattern (93 bp):
TGTCACCCCACAATACAGCAAGAAGTCAGCGTGTCACCACAGAAATCTACATGCACTCAACATGT
CACACCAACTATCTGCTTCCACTCAACG
Found at i:14290170 original size:118 final size:118
Alignment explanation
Indices: 14290016--14290320 Score: 466
Period size: 118 Copynumber: 2.6 Consensus size: 118
14290006 TTCCACTCAG
* * * *
14290016 CGTGTCACCCCACAATATTGCAAGAAGTCAGCGTGTCACCACAGAAATTTGTATGCACTCAGCAT
1 CGTGTCACCCCACAATAATGCAAGAAGTCAGCGTGTCACCAAAGAAATCTGTATGCACTCAACAT
*
14290081 GTCACACCAACTATCTGCTTCCACTCAACGTGTCACCACAAGATGGGGTGTGC
66 GTCACACCAACTATCTGCTTCCACTCAACGTGTCACCACAAGATGGGCTGTGC
* * * * *
14290134 CGTGTCACCCCACAATACTGTAAGAAGTCAGTGTGTCACCATAGAAATCTGTATGCACTCAACGT
1 CGTGTCACCCCACAATAATGCAAGAAGTCAGCGTGTCACCAAAGAAATCTGTATGCACTCAACAT
* * *
14290199 GTCACATCAACTATCTGCTTCCACTCAGCTTGTCACCACAAGATGGGCTGTGC
66 GTCACACCAACTATCTGCTTCCACTCAACGTGTCACCACAAGATGGGCTGTGC
* * *
14290252 CGTGTCACCCCACAATAATGCAAGAAGTCAACGTGTCACCAAAGAAATCTGCATGCACTCAACGT
1 CGTGTCACCCCACAATAATGCAAGAAGTCAGCGTGTCACCAAAGAAATCTGTATGCACTCAACAT
14290317 GTCA
66 GTCA
14290321 ACTTAGGATA
Statistics
Matches: 170, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
118 170 1.00
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (118 bp):
CGTGTCACCCCACAATAATGCAAGAAGTCAGCGTGTCACCAAAGAAATCTGTATGCACTCAACAT
GTCACACCAACTATCTGCTTCCACTCAACGTGTCACCACAAGATGGGCTGTGC
Found at i:14294213 original size:31 final size:31
Alignment explanation
Indices: 14294172--14294311 Score: 174
Period size: 31 Copynumber: 4.5 Consensus size: 31
14294162 TTTTTCAGTC
*
14294172 ATGTTGTAACACGCCATGCATATAACATAAA
1 ATGTTGTAACACGCCATGCATATAACGTAAA
* * * *
14294203 ATGTTATAACACGCCATGAATATACCGTTAA
1 ATGTTGTAACACGCCATGCATATAACGTAAA
* * * *
14294234 ATTTTGTAACATGTCATGCAGATAACGTAAA
1 ATGTTGTAACACGCCATGCATATAACGTAAA
14294265 ATGTTG-ATACACGCCATGCATATAACGTAAA
1 ATGTTGTA-ACACGCCATGCATATAACGTAAA
*
14294296 ATGTTGTAACATGCCA
1 ATGTTGTAACACGCCA
14294312 ATGTTGACAT
Statistics
Matches: 89, Mismatches: 18, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
30 1 0.01
31 87 0.98
32 1 0.01
ACGTcount: A:0.39, C:0.18, G:0.15, T:0.29
Consensus pattern (31 bp):
ATGTTGTAACACGCCATGCATATAACGTAAA
Found at i:14294252 original size:62 final size:62
Alignment explanation
Indices: 14294172--14294311 Score: 192
Period size: 62 Copynumber: 2.3 Consensus size: 62
14294162 TTTTTCAGTC
* * * *
14294172 ATGTTGTAACACGCCATGCATATAACATAAAATGTT-ATAACACGCCATGAATATACCGTTAA
1 ATGTTGTAACATGCCATGCAGATAACATAAAATGTTGAT-ACACGCCATGAATATAACGTAAA
* * * *
14294234 ATTTTGTAACATGTCATGCAGATAACGTAAAATGTTGATACACGCCATGCATATAACGTAAA
1 ATGTTGTAACATGCCATGCAGATAACATAAAATGTTGATACACGCCATGAATATAACGTAAA
14294296 ATGTTGTAACATGCCA
1 ATGTTGTAACATGCCA
14294312 ATGTTGACAT
Statistics
Matches: 67, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
62 65 0.97
63 2 0.03
ACGTcount: A:0.39, C:0.18, G:0.15, T:0.29
Consensus pattern (62 bp):
ATGTTGTAACATGCCATGCAGATAACATAAAATGTTGATACACGCCATGAATATAACGTAAA
Found at i:14297231 original size:21 final size:22
Alignment explanation
Indices: 14297207--14297256 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
14297197 ATTGCTTGAA
* *
14297207 TGAACTTGTTTAAATGA-TTTT
1 TGAACTTGGTTAAATCAGTTTT
* *
14297228 TGAAGTTGGTTGAATCAGTTTT
1 TGAACTTGGTTAAATCAGTTTT
14297250 TGAACTT
1 TGAACTT
14297257 AATTTATTAA
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
21 13 0.57
22 10 0.43
ACGTcount: A:0.26, C:0.06, G:0.20, T:0.48
Consensus pattern (22 bp):
TGAACTTGGTTAAATCAGTTTT
Found at i:14298172 original size:28 final size:29
Alignment explanation
Indices: 14298131--14298206 Score: 88
Period size: 27 Copynumber: 2.8 Consensus size: 29
14298121 TTAAAGGTTG
*
14298131 TGCTTGAAAC-TTGAAAAGGCAATGATTA
1 TGCTTGAACCTTTGAAAAGGCAATGATTA
* * *
14298159 TGCTT-AATCTTTGAAAA-GCCATGGTTA
1 TGCTTGAACCTTTGAAAAGGCAATGATTA
14298186 TGCTTGAACCTTT-AAAAGGCA
1 TGCTTGAACCTTTGAAAAGGCA
14298207 TTGTATTGAA
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
27 20 0.50
28 20 0.50
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.32
Consensus pattern (29 bp):
TGCTTGAACCTTTGAAAAGGCAATGATTA
Found at i:14314481 original size:4 final size:4
Alignment explanation
Indices: 14314468--14314527 Score: 52
Period size: 4 Copynumber: 15.0 Consensus size: 4
14314458 TAATTGAAGT
* * * *
14314468 TAAA TAAAA TAAA TAAA TAAA TAAA T-AA TGAA TGAA TGAA TAAA AAAA
1 TAAA T-AAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA
14314516 T-AA TAAAA TAAA
1 TAAA T-AAA TAAA
14314528 AGAAAGAATA
Statistics
Matches: 49, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
3 6 0.12
4 36 0.73
5 7 0.14
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (4 bp):
TAAA
Found at i:14314539 original size:17 final size:16
Alignment explanation
Indices: 14314506--14314539 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
14314496 TGAATGAATG
*
14314506 AATAAAAAAATAATAA
1 AATAAAAAAAGAATAA
14314522 AATAAAAGAAAGAATAA
1 AATAAAA-AAAGAATAA
14314539 A
1 A
14314540 GGGAGATAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.79, C:0.00, G:0.06, T:0.15
Consensus pattern (16 bp):
AATAAAAAAAGAATAA
Found at i:14314919 original size:15 final size:15
Alignment explanation
Indices: 14314899--14314932 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
14314889 GAGAAAAGAC
*
14314899 AAGAAAGAATGGAAA
1 AAGAAAGAAAGGAAA
14314914 AAGAAAGAAAGGAAA
1 AAGAAAGAAAGGAAA
14314929 AAGA
1 AAGA
14314933 GAAAGAGAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.71, C:0.00, G:0.26, T:0.03
Consensus pattern (15 bp):
AAGAAAGAAAGGAAA
Found at i:14315077 original size:19 final size:18
Alignment explanation
Indices: 14315038--14315086 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
14315028 AGCCGAGGAG
14315038 AAAAGAAAGAGAAATAAA
1 AAAAGAAAGAGAAATAAA
* *
14315056 AAAAGAAA-AGAGAAGAAG
1 AAAAGAAAGAGA-AATAAA
14315074 AAAA-AAAGAGAAA
1 AAAAGAAAGAGAAA
14315087 AAGGGGAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
17 8 0.30
18 19 0.70
ACGTcount: A:0.78, C:0.00, G:0.20, T:0.02
Consensus pattern (18 bp):
AAAAGAAAGAGAAATAAA
Found at i:14315079 original size:21 final size:19
Alignment explanation
Indices: 14315038--14315082 Score: 56
Period size: 21 Copynumber: 2.3 Consensus size: 19
14315028 AGCCGAGGAG
*
14315038 AAAAG-AAAGAGAAATAAA
1 AAAAGAAAAGAGAAAGAAA
14315056 AAAAGAAAAGAGAAGAAGAAA
1 AAAAGAAAAGAG-A-AAGAAA
14315077 AAAAGA
1 AAAAGA
14315083 GAAAAAGGGG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 5 0.22
19 6 0.26
20 1 0.04
21 11 0.48
ACGTcount: A:0.78, C:0.00, G:0.20, T:0.02
Consensus pattern (19 bp):
AAAAGAAAAGAGAAAGAAA
Found at i:14315085 original size:23 final size:23
Alignment explanation
Indices: 14315035--14315087 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
14315025 CCAAGCCGAG
14315035 GAGAAAAGAAAGAGAAATAAAAA
1 GAGAAAAGAAAGAGAAATAAAAA
*
14315058 AAGAAAAGAGAAGA-AGAA-AAAAA
1 GAGAAAAGA-AAGAGA-AATAAAAA
14315081 GAGAAAA
1 GAGAAAA
14315088 AGGGGAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
23 20 0.77
24 6 0.23
ACGTcount: A:0.75, C:0.00, G:0.23, T:0.02
Consensus pattern (23 bp):
GAGAAAAGAAAGAGAAATAAAAA
Found at i:14316713 original size:62 final size:62
Alignment explanation
Indices: 14316565--14316810 Score: 318
Period size: 62 Copynumber: 4.0 Consensus size: 62
14316555 TTGATTGTAA
* *
14316565 AAAAAGGGGGACCTGAAGCCCTGATTTATAT-TAGGTGGCGTGGGTAGTTCCCACGAGTAGGT
1 AAAAAGGGAGACTTGAAGCCCTGATTTATATAT-GGTGGCGTGGGTAGTTCCCACGAGTAGGT
* * * *
14316627 --GAAGGGGGACCTGAAGCCCTGATTTATATATGGTGGCATGGGTAGTTCCCACGAGTAGGT
1 AAAAAGGGAGACTTGAAGCCCTGATTTATATATGGTGGCGTGGGTAGTTCCCACGAGTAGGT
* * * * *
14316687 AAAAAGGGAGATTTGAAGCCCCGATTTATATATAGTGGCGTGGGTAGTTCCCACAAGTAAGT
1 AAAAAGGGAGACTTGAAGCCCTGATTTATATATGGTGGCGTGGGTAGTTCCCACGAGTAGGT
* * * * *
14316749 AAAAAGGGAGACTTGAATCCCTGATTTATATATGATGGTGTGAGAAGTTCCCACGAGTAGGT
1 AAAAAGGGAGACTTGAAGCCCTGATTTATATATGGTGGCGTGGGTAGTTCCCACGAGTAGGT
14316811 GATGATATCT
Statistics
Matches: 160, Mismatches: 21, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
60 56 0.35
61 1 0.01
62 103 0.64
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.26
Consensus pattern (62 bp):
AAAAAGGGAGACTTGAAGCCCTGATTTATATATGGTGGCGTGGGTAGTTCCCACGAGTAGGT
Found at i:14323172 original size:35 final size:34
Alignment explanation
Indices: 14323111--14323261 Score: 136
Period size: 35 Copynumber: 4.6 Consensus size: 34
14323101 GAAAAGTTAG
* *
14323111 TTGTTG-GGTTTTGGTTGATCCCTTGAAAAACCA
1 TTGTTGAGGTTGTGGTTGAGCCCTTGAAAAACCA
* *
14323144 TTGTTGTAGGTTGTGGTTGAGCCTTTGAAAAACGA
1 TTGTTG-AGGTTGTGGTTGAGCCCTTGAAAAACCA
* * *
14323179 CT-TTG-GGTTTTGGTTGAGCCCGTGAAAAACCA
1 TTGTTGAGGTTGTGGTTGAGCCCTTGAAAAACCA
*
14323211 TTG-TGAAAGGTTGTGGTTGAG-CTTTGAAAAACCA
1 TTGTTG--AGGTTGTGGTTGAGCCCTTGAAAAACCA
* *
14323245 CT-TTG-GGTTTTGGTTGA
1 TTGTTGAGGTTGTGGTTGA
14323262 TCCTGGTAAA
Statistics
Matches: 96, Mismatches: 15, Indels: 16
0.76 0.12 0.13
Matches are distributed among these distances:
31 11 0.11
32 26 0.27
33 6 0.06
34 17 0.18
35 36 0.38
ACGTcount: A:0.22, C:0.12, G:0.29, T:0.37
Consensus pattern (34 bp):
TTGTTGAGGTTGTGGTTGAGCCCTTGAAAAACCA
Found at i:14323192 original size:67 final size:66
Alignment explanation
Indices: 14323114--14323285 Score: 249
Period size: 66 Copynumber: 2.6 Consensus size: 66
14323104 AAGTTAGTTG
* * *
14323114 TTGGGTTTTGGTTGATCCCTTGAAAAACCATTGTTG-TAGGTTGTGGTTGAGCCTTTGAAAAACG
1 TTGGGTTTTGGTTGATCCCGTGAAAAACCATTG-TGAAAGGTTGTGGTTGAG-CTTTGAAAAACC
14323178 ACT
64 ACT
*
14323181 TTGGGTTTTGGTTGAGCCCGTGAAAAACCATTGTGAAAGGTTGTGGTTGAGCTTTGAAAAACCAC
1 TTGGGTTTTGGTTGATCCCGTGAAAAACCATTGTGAAAGGTTGTGGTTGAGCTTTGAAAAACCAC
14323246 T
66 T
* *
14323247 TTGGGTTTTGGTTGATCCTG-GTAAAAGCCATTGTGAAAG
1 TTGGGTTTTGGTTGATCCCGTG-AAAAACCATTGTGAAAG
14323286 ATTTTGACTA
Statistics
Matches: 96, Mismatches: 7, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
65 1 0.01
66 50 0.52
67 45 0.47
ACGTcount: A:0.24, C:0.13, G:0.28, T:0.35
Consensus pattern (66 bp):
TTGGGTTTTGGTTGATCCCGTGAAAAACCATTGTGAAAGGTTGTGGTTGAGCTTTGAAAAACCAC
T
Found at i:14323807 original size:18 final size:18
Alignment explanation
Indices: 14323786--14323822 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
14323776 ATAATTTTAT
14323786 TAATATTTATAATGAAAA
1 TAATATTTATAATGAAAA
*
14323804 TAATATTTTTAATGAAAA
1 TAATATTTATAATGAAAA
14323822 T
1 T
14323823 CATTGCAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.43
Consensus pattern (18 bp):
TAATATTTATAATGAAAA
Found at i:14325376 original size:365 final size:361
Alignment explanation
Indices: 14324659--14325362 Score: 957
Period size: 365 Copynumber: 1.9 Consensus size: 361
14324649 ATTTATTTCA
* * *
14324659 TTTTGGACGTGGCATTCATAGCTGATAAGAAAGGCTAATTGAATAATAGAGTCCATGTGAAAGAA
1 TTTTGGACGTGGCATTCATAACTAATAAGAAAGGCCAATTGAATAATAGAGTCCATGTGAAAGAA
* * * * *
14324724 GTTTTGTACTTTGTCACGTTTTGTTTTTAATTTTAGCTTTTATTTGCACATGAATCATAATTAAT
66 GTTTTGTACTTTGCCACGTCTTGTTTTCAATTTTAGCTTTTATTTGCACAAGAATCACAATTAAT
* * * * *
14324789 GATAAGGACAAAAGCTTTTATTTATTCCTTGCAAATAAATAAATAAAATCAAACATATATATTTT
131 GATAAGGACAAAAGCTTCTATCTATTCCTTGCAAATAAATAAATAAAATC-AACACACACA---T
* * * * * * * * *
14324854 TATATATATAAAAGATTTTGTATGAAGGATGGTTAAAGAGAAATCATACATGGTTATGGATCGGG
192 CACACACACAAAAGATTTTGTATGAAGGATGGTTAAAAAGAAATCATACAAGCTCATGGATCGGG
* * *** * * *
14324919 TCAATGATTCGATTTGGAGTAAAAAATTAGTCAGTTTTGAAATAAAATTAAATTATAACATAAAA
257 TCAATAATTCAATTCAAAGCAAAAAATTAATCAATTTTGAAATAAAATTAAATTATAACATAAAA
* * *
14324984 TTTCATTAATAATTTAAATATAAAAAAAGGAGAAAAAAAG
322 TTTCATTAACAATTTAAAAAGAAAAAAAGGAGAAAAAAAG
* * *
14325024 TTTTGGATGTGGCATTCATAACTAATAAGAAAGGCCATTTGCATAATAGAGTCCATGTGAAAGAA
1 TTTTGGACGTGGCATTCATAACTAATAAGAAAGGCCAATTGAATAATAGAGTCCATGTGAAAGAA
*
14325089 GTTTTGTACTTTGCCACGTCTTGTTTTCAATTTTAGCTTTTATTTGCACAAGAATCACAGTTAAT
66 GTTTTGTACTTTGCCACGTCTTGTTTTCAATTTTAGCTTTTATTTGCACAAGAATCACAATTAAT
14325154 GATAAGGACAGAAA-CTTCTATCTATTCCTTGCAAATAAATAAATAAAATC-ACACACACA-CAC
131 GATAAGGACA-AAAGCTTCTATCTATTCCTTGCAAATAAATAAATAAAATCAACACACACATCAC
* *
14325216 ACACACACAAGATTTTGTATG-AGAGATGGTTAAAAAGTAATCATACAAGCTCATGGATCGAGGT
195 ACACACAAAAGATTTTGTATGAAG-GATGGTTAAAAAGAAATCATACAAGCTCATGGATCG-GGT
*
14325280 CAATAATTCAATTCAAAGCAAAAATTTAATCAATTTTGAAATAAAATTAAATTATAACATAAAAT
258 CAATAATTCAATTCAAAGCAAAAAATTAATCAATTTTGAAATAAAATTAAATTATAACATAAAAT
14325345 TTCATTAACAATTTAAAA
323 TTCATTAACAATTTAAAA
14325363 CAAAAAGAAA
Statistics
Matches: 297, Mismatches: 39, Indels: 11
0.86 0.11 0.03
Matches are distributed among these distances:
358 2 0.01
359 49 0.16
360 75 0.25
363 6 0.02
365 162 0.55
366 3 0.01
ACGTcount: A:0.41, C:0.11, G:0.14, T:0.34
Consensus pattern (361 bp):
TTTTGGACGTGGCATTCATAACTAATAAGAAAGGCCAATTGAATAATAGAGTCCATGTGAAAGAA
GTTTTGTACTTTGCCACGTCTTGTTTTCAATTTTAGCTTTTATTTGCACAAGAATCACAATTAAT
GATAAGGACAAAAGCTTCTATCTATTCCTTGCAAATAAATAAATAAAATCAACACACACATCACA
CACACAAAAGATTTTGTATGAAGGATGGTTAAAAAGAAATCATACAAGCTCATGGATCGGGTCAA
TAATTCAATTCAAAGCAAAAAATTAATCAATTTTGAAATAAAATTAAATTATAACATAAAATTTC
ATTAACAATTTAAAAAGAAAAAAAGGAGAAAAAAAG
Found at i:14326145 original size:36 final size:36
Alignment explanation
Indices: 14326098--14326168 Score: 115
Period size: 36 Copynumber: 2.0 Consensus size: 36
14326088 TTTTGAAATT
14326098 GACTAAGAAGATGACTCTTGGTAAAGACATAAACAA
1 GACTAAGAAGATGACTCTTGGTAAAGACATAAACAA
* * *
14326134 GACTAGGAAGATGACTTTTGGTTAAGACATAAACA
1 GACTAAGAAGATGACTCTTGGTAAAGACATAAACA
14326169 GTGTGATTTG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.44, C:0.13, G:0.21, T:0.23
Consensus pattern (36 bp):
GACTAAGAAGATGACTCTTGGTAAAGACATAAACAA
Found at i:14327848 original size:72 final size:74
Alignment explanation
Indices: 14327682--14327874 Score: 216
Period size: 73 Copynumber: 2.7 Consensus size: 74
14327672 ATGCAGACAA
* * * **
14327682 AGAGC-TCTTAGTCGACTAACTTTCTTCTTGTTCGACTAAGTTGGTTCTGTCTTCTGGTCGCAGA
1 AGAGCATCTTAGTCGACTAACTCTCTTCTTGGTCGACTAAGTTGGTTCTATCTTCAAGTCGCAGA
*
14327746 TTCTGGTAG
66 TTCTGGCAG
* *
14327755 AGAGCAT-TTAGTCGACTAACTCAT-TTCTTGGTCGACTAAGTTGGTTTTATCTTGAAGTC-CAG
1 AGAGCATCTTAGTCGACTAACTC-TCTTCTTGGTCGACTAAGTTGGTTCTATCTTCAAGTCGCAG
*
14327817 ATTTTGGCAG
65 ATTCTGGCAG
* * * * *
14327827 TG-GCTTCTTAGTCGACTAACTCTCATCTTGGTCTACTAAGTCGGTTCT
1 AGAGCATCTTAGTCGACTAACTCTCTTCTTGGTCGACTAAGTTGGTTCT
14327875 GTTTCTCAAA
Statistics
Matches: 101, Mismatches: 15, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
71 4 0.04
72 47 0.47
73 48 0.48
74 2 0.02
ACGTcount: A:0.19, C:0.20, G:0.22, T:0.39
Consensus pattern (74 bp):
AGAGCATCTTAGTCGACTAACTCTCTTCTTGGTCGACTAAGTTGGTTCTATCTTCAAGTCGCAGA
TTCTGGCAG
Found at i:14338515 original size:10 final size:10
Alignment explanation
Indices: 14338487--14338515 Score: 51
Period size: 9 Copynumber: 3.0 Consensus size: 10
14338477 TAAATCCATT
14338487 TTTCATAAAA
1 TTTCATAAAA
14338497 TTT-ATAAAA
1 TTTCATAAAA
14338506 TTTCATAAAA
1 TTTCATAAAA
14338516 ACNNNNNNNN
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.50
10 9 0.50
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (10 bp):
TTTCATAAAA
Found at i:14352104 original size:2 final size:2
Alignment explanation
Indices: 14352099--14352126 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
14352089 ACACACACAC
14352099 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
14352127 GAATAATGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:14352162 original size:2 final size:2
Alignment explanation
Indices: 14352157--14352184 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
14352147 ACACACACAC
14352157 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
14352185 GAATAATGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:14352177 original size:58 final size:57
Alignment explanation
Indices: 14352087--14352201 Score: 221
Period size: 58 Copynumber: 2.0 Consensus size: 57
14352077 ATCAGAGCGC
14352087 ACACACACACACTATATATATATATATATATATATATATAGAATAATGAAATGGGAA
1 ACACACACACACTATATATATATATATATATATATATATAGAATAATGAAATGGGAA
14352144 NACACACACACACTATATATATATATATATATATATATATAGAATAATGAAATGGGAA
1 -ACACACACACACTATATATATATATATATATATATATATAGAATAATGAAATGGGAA
14352202 TCATTGAATT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 57 1.00
ACGTcount: A:0.50, C:0.10, G:0.09, T:0.30
Consensus pattern (57 bp):
ACACACACACACTATATATATATATATATATATATATATAGAATAATGAAATGGGAA
Found at i:14352551 original size:2 final size:2
Alignment explanation
Indices: 14352539--14352573 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
14352529 TATTCAGCCT
* *
14352539 TC TC CC TC TC TC TT TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
14352574 GAAAATAATA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:14353694 original size:13 final size:14
Alignment explanation
Indices: 14353676--14353705 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
14353666 CATTGCTGGC
14353676 AAAAAGAA-AAAAA
1 AAAAAGAAGAAAAA
14353689 AAAAAGAAGAAAAA
1 AAAAAGAAGAAAAA
14353703 AAA
1 AAA
14353706 TTAAAGCAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.50
14 8 0.50
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (14 bp):
AAAAAGAAGAAAAA
Found at i:14359621 original size:25 final size:27
Alignment explanation
Indices: 14359589--14359647 Score: 72
Period size: 25 Copynumber: 2.3 Consensus size: 27
14359579 AATCACGTCG
*
14359589 GTTT-GTTTTA-ATTTAAGTTG-TTTTA
1 GTTTAGTTTTATA-TTAAATTGCTTTTA
14359614 -TTTAGTTTTATATTAAATTGCTTTTA
1 GTTTAGTTTTATATTAAATTGCTTTTA
14359640 GTTTAGTT
1 GTTTAGTT
14359648 AGTATTGAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
24 3 0.10
25 13 0.45
26 6 0.21
27 7 0.24
ACGTcount: A:0.22, C:0.02, G:0.14, T:0.63
Consensus pattern (27 bp):
GTTTAGTTTTATATTAAATTGCTTTTA
Found at i:14372321 original size:31 final size:30
Alignment explanation
Indices: 14372278--14372337 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 30
14372268 TCAAGTTTGA
*
14372278 TACAATGCCTTTTGTGGATT-AAGCACAACCT
1 TACAATGCCTTTTATGG-TTAAAGCA-AACCT
*
14372309 TACAGTGCCTTTTATGGTTAAAGCAAACC
1 TACAATGCCTTTTATGGTTAAAGCAAACC
14372338 ACTTTACCTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 6 0.23
31 20 0.77
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.32
Consensus pattern (30 bp):
TACAATGCCTTTTATGGTTAAAGCAAACCT
Found at i:14372866 original size:20 final size:20
Alignment explanation
Indices: 14372841--14372878 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
14372831 TTTTGTATAA
14372841 AATGTATCGATACATTTGCC
1 AATGTATCGATACATTTGCC
14372861 AATGTATCGATACATTTG
1 AATGTATCGATACATTTG
14372879 AGACAGTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.37
Consensus pattern (20 bp):
AATGTATCGATACATTTGCC
Found at i:14377023 original size:42 final size:42
Alignment explanation
Indices: 14376964--14377082 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
14376954 GTTGATTTGA
14376964 ACTCGGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCTG
1 ACTCGGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCTG
* *
14377006 ACTCGACTATGTGCGAGTAAGAGTGCACATAAGCCGTTGCTG
1 ACTCGGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCTG
* * *
14377048 ACCCGGCTATGTGTGAGTGGGAGTGCACATAAGCC
1 ACTCGGCTATGTGCGAGTAGGAGTGCACATAAGCC
14377083 ATCGTTGCCT
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.24, C:0.22, G:0.32, T:0.23
Consensus pattern (42 bp):
ACTCGGCTATGTGCGAGTAGGAGTGCACATAAGCCGTTGCTG
Found at i:14377542 original size:26 final size:26
Alignment explanation
Indices: 14377506--14377567 Score: 106
Period size: 26 Copynumber: 2.4 Consensus size: 26
14377496 TTGCATATGA
*
14377506 GATGATGATGATGGGATGGTGTGCAT
1 GATGATGATGATGGGATGGTATGCAT
14377532 GATGATGATGATGGGATGGTATGCAT
1 GATGATGATGATGGGATGGTATGCAT
*
14377558 GTTGATGATG
1 GATGATGATG
14377568 GGTATATGGT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.24, C:0.03, G:0.40, T:0.32
Consensus pattern (26 bp):
GATGATGATGATGGGATGGTATGCAT
Found at i:14378453 original size:42 final size:42
Alignment explanation
Indices: 14378406--14378570 Score: 206
Period size: 42 Copynumber: 3.9 Consensus size: 42
14378396 AGAGCCAATC
* * * *
14378406 ACAACAAAATCATCGAAAGTAGACACCTACTCAATCCACTTT
1 ACAACAAAATCATGGGAAGTGGAGACCTACTCAATCCACTTT
*
14378448 ACAACAAAACCATGGGAAGTGGAGACCTACTCAATCCACTTT
1 ACAACAAAATCATGGGAAGTGGAGACCTACTCAATCCACTTT
* * * *
14378490 ACCA-AAAATCTTGGGAAGTGGAGACATACTCAATCCACATT
1 ACAACAAAATCATGGGAAGTGGAGACCTACTCAATCCACTTT
* * *
14378531 AGAACAAAATCATGGGAATGTGGAGACTTTCTCAATCCAC
1 ACAACAAAATCATGGGAA-GTGGAGACCTACTCAATCCAC
14378571 ATTCATAGCA
Statistics
Matches: 106, Mismatches: 15, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
41 35 0.33
42 52 0.49
43 19 0.18
ACGTcount: A:0.39, C:0.24, G:0.15, T:0.21
Consensus pattern (42 bp):
ACAACAAAATCATGGGAAGTGGAGACCTACTCAATCCACTTT
Found at i:14385873 original size:3 final size:3
Alignment explanation
Indices: 14385865--14385903 Score: 51
Period size: 3 Copynumber: 13.0 Consensus size: 3
14385855 TAAATATGGT
* * *
14385865 TAC TAC TAC TAC TAG TAC TAC TAC TAT TAC TAT TAC TAC
1 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC
14385904 AGCTACTAGA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.26, G:0.03, T:0.38
Consensus pattern (3 bp):
TAC
Found at i:14397746 original size:21 final size:21
Alignment explanation
Indices: 14397689--14397756 Score: 82
Period size: 21 Copynumber: 3.2 Consensus size: 21
14397679 TTGACTTTGA
* *
14397689 ATGATGGCATCAGTCCTTGTC
1 ATGAAGGCATCAGTCTTTGTC
*
14397710 ATGAAGTCATCAGTCTTTGTC
1 ATGAAGGCATCAGTCTTTGTC
* * *
14397731 ATGAAGGCATTAGTCTGTATC
1 ATGAAGGCATCAGTCTTTGTC
14397752 ATGAA
1 ATGAA
14397757 TTGCATGAAC
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.34
Consensus pattern (21 bp):
ATGAAGGCATCAGTCTTTGTC
Found at i:14406557 original size:6 final size:6
Alignment explanation
Indices: 14406546--14406570 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
14406536 TCAATTAAGA
14406546 ATTTAT ATTTAT ATTTAT ATTTAT A
1 ATTTAT ATTTAT ATTTAT ATTTAT A
14406571 GATCATGAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (6 bp):
ATTTAT
Found at i:14412251 original size:15 final size:17
Alignment explanation
Indices: 14412231--14412263 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
14412221 GTAATTTTAT
14412231 TTAAT-AAATT-TTCTA
1 TTAATAAAATTATTCTA
14412246 TTAATAAAATTATTCTA
1 TTAATAAAATTATTCTA
14412263 T
1 T
14412264 GATTTAATTC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.31
16 5 0.31
17 6 0.38
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (17 bp):
TTAATAAAATTATTCTA
Found at i:14412394 original size:8 final size:8
Alignment explanation
Indices: 14412351--14412410 Score: 54
Period size: 8 Copynumber: 7.4 Consensus size: 8
14412341 TATTGGTAAC
14412351 TAAATTAT
1 TAAATTAT
14412359 T-AATT-T
1 TAAATTAT
14412365 TAAA-TAGT
1 TAAATTA-T
14412373 TAAATATAT
1 TAAAT-TAT
*
14412382 AAAATTAT
1 TAAATTAT
14412390 TAAATTAAT
1 TAAATT-AT
14412399 TAAAATTAT
1 T-AAATTAT
14412408 TAA
1 TAA
14412411 TTTTTTCTAG
Statistics
Matches: 43, Mismatches: 2, Indels: 14
0.73 0.03 0.24
Matches are distributed among these distances:
6 3 0.07
7 6 0.14
8 16 0.37
9 11 0.26
10 7 0.16
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (8 bp):
TAAATTAT
Found at i:14418047 original size:19 final size:20
Alignment explanation
Indices: 14418020--14418092 Score: 60
Period size: 20 Copynumber: 3.6 Consensus size: 20
14418010 ATTAATTTAT
* *
14418020 TTTAATTTATGTTTA-AATG
1 TTTATTTTATGTTAATAATG
*
14418039 TTTATTTTAAGTTAATAATG
1 TTTATTTTATGTTAATAATG
* * *
14418059 -TTAGTTTTATGTTATTTATA
1 TTTA-TTTTATGTTAATAATG
14418079 TTTATTTTAATGTT
1 TTTATTTT-ATGTT
14418093 TTTGTAGGAG
Statistics
Matches: 43, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
19 15 0.35
20 20 0.47
21 8 0.19
ACGTcount: A:0.29, C:0.00, G:0.10, T:0.62
Consensus pattern (20 bp):
TTTATTTTATGTTAATAATG
Found at i:14420838 original size:73 final size:73
Alignment explanation
Indices: 14420638--14420825 Score: 281
Period size: 73 Copynumber: 2.6 Consensus size: 73
14420628 AGAGACAAAA
*
14420638 ATGACTTAATCGACTAAGAAGCATTGTTAGTCGACTAAGAGCTCACTACCAGAAACTAAGATCAG
1 ATGACTTAATCGACTAAGAAGCATTGTTAGTCGACTAAGAGCTCACTGCCAGAAACTAAGATCAG
*
14420703 AAATAGAG
66 AAACAGAG
* * * *
14420711 ACGACTTAATCGACTAAGAAGCATTGTTAGTTGACTAAGAACTCACTGCCAGAAACT-GGAATCA
1 ATGACTTAATCGACTAAGAAGCATTGTTAGTCGACTAAGAGCTCACTGCCAGAAACTAAG-ATCA
14420775 GAACACAGAG
65 GAA-ACAGAG
*
14420785 ATGACTTAATCGACTAAGAAGTA-TGTTAGTCGACTAAGAGC
1 ATGACTTAATCGACTAAGAAGCATTGTTAGTCGACTAAGAGC
14420826 ACTCTGTCAG
Statistics
Matches: 103, Mismatches: 10, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
72 1 0.01
73 76 0.74
74 26 0.25
ACGTcount: A:0.39, C:0.18, G:0.20, T:0.22
Consensus pattern (73 bp):
ATGACTTAATCGACTAAGAAGCATTGTTAGTCGACTAAGAGCTCACTGCCAGAAACTAAGATCAG
AAACAGAG
Found at i:14421745 original size:22 final size:22
Alignment explanation
Indices: 14421684--14421737 Score: 90
Period size: 22 Copynumber: 2.5 Consensus size: 22
14421674 TAATAGATTG
*
14421684 ATTCTCGCTGTAGTGAAAAGGC
1 ATTCTCGCTGTAGCGAAAAGGC
*
14421706 ATTCTCTCTGTAGCGAAAAGGC
1 ATTCTCGCTGTAGCGAAAAGGC
14421728 ATTCTCGCTG
1 ATTCTCGCTG
14421738 AAACGAAATT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.30
Consensus pattern (22 bp):
ATTCTCGCTGTAGCGAAAAGGC
Found at i:14421991 original size:43 final size:43
Alignment explanation
Indices: 14421943--14422062 Score: 204
Period size: 43 Copynumber: 2.8 Consensus size: 43
14421933 ATCGTCATGT
* * *
14421943 GCACTCCCTACTCGCTCATAGCTAGGTCATCATCGGTTTATGC
1 GCACTCCCTACTCGCACATAGCTGGGTCATCATCGGCTTATGC
*
14421986 GCACTCCCTACTCGCACATAGCCGGGTCATCATCGGCTTATGC
1 GCACTCCCTACTCGCACATAGCTGGGTCATCATCGGCTTATGC
14422029 GCACTCCCTACTCGCACATAGCTGGGTCATCATC
1 GCACTCCCTACTCGCACATAGCTGGGTCATCATC
14422063 ATCACACAAA
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 72 1.00
ACGTcount: A:0.19, C:0.36, G:0.19, T:0.26
Consensus pattern (43 bp):
GCACTCCCTACTCGCACATAGCTGGGTCATCATCGGCTTATGC
Found at i:14423092 original size:56 final size:57
Alignment explanation
Indices: 14423003--14423114 Score: 154
Period size: 56 Copynumber: 2.0 Consensus size: 57
14422993 CTTATCTCAG
* * * *
14423003 CCTCAAAGATCAGCAGCCAAAGTTGCTTATTTCACCCTT-AAAATCGGCAACCAAAA
1 CCTCAAAAATCAGCAACCAAAGTTGCTCATTTCACCCTTCAAAATCAGCAACCAAAA
* * *
14423059 CCTCAAAAATCAGCAACCAAAGTTGCTCCTTTCAGCCTTCAAAATCAGCAGCCAAA
1 CCTCAAAAATCAGCAACCAAAGTTGCTCATTTCACCCTTCAAAATCAGCAACCAAA
14423115 GTTGCTCATC
Statistics
Matches: 48, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
56 34 0.71
57 14 0.29
ACGTcount: A:0.38, C:0.30, G:0.12, T:0.21
Consensus pattern (57 bp):
CCTCAAAAATCAGCAACCAAAGTTGCTCATTTCACCCTTCAAAATCAGCAACCAAAA
Found at i:14423108 original size:35 final size:34
Alignment explanation
Indices: 14423059--14423138 Score: 106
Period size: 35 Copynumber: 2.3 Consensus size: 34
14423049 GCAACCAAAA
* *
14423059 CCTCAAAAATCAGCAACCAAAGTTGCTCCTTTCAGC
1 CCTC-AAAATCAGCAACCAAAGTTGCTCATCTCA-C
* *
14423095 CTTCAAAATCAGCAGCCAAAGTTGCTCATCTCAC
1 CCTCAAAATCAGCAACCAAAGTTGCTCATCTCAC
14423129 CCTCAAAATC
1 CCTCAAAATC
14423139 GACAACTCAA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
34 10 0.26
35 26 0.67
36 3 0.08
ACGTcount: A:0.34, C:0.34, G:0.10, T:0.23
Consensus pattern (34 bp):
CCTCAAAATCAGCAACCAAAGTTGCTCATCTCAC
Found at i:14423129 original size:91 final size:91
Alignment explanation
Indices: 14422966--14423144 Score: 243
Period size: 91 Copynumber: 2.0 Consensus size: 91
14422956 TGCTCCTTTC
* * *
14422966 AACCACAAAAATCAGCAGCCAAAGCTACTTATCTCAGCCTCAAAGATCAGCAGCCAAAGTTGCTT
1 AACCACAAAAATCAGCAACCAAAGCTACTCATCTCAGCCTCAAAGATCAGCAGCCAAAGTTGCTC
* * *
14423031 ATTTCACCCTTAAAATCGGCAACCAA
66 ATCTCACCCTCAAAATCGACAACCAA
* * * * *
14423057 AACCTCAAAAATCAGCAACCAAAGTTGCTCCTTTCAGCCTTCAAA-ATCAGCAGCCAAAGTTGCT
1 AACCACAAAAATCAGCAACCAAAGCTACTCATCTCAGCC-TCAAAGATCAGCAGCCAAAGTTGCT
14423121 CATCTCACCCTCAAAATCGACAAC
65 CATCTCACCCTCAAAATCGACAAC
14423145 TCAAGCCTTT
Statistics
Matches: 76, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
91 71 0.93
92 5 0.07
ACGTcount: A:0.37, C:0.31, G:0.11, T:0.20
Consensus pattern (91 bp):
AACCACAAAAATCAGCAACCAAAGCTACTCATCTCAGCCTCAAAGATCAGCAGCCAAAGTTGCTC
ATCTCACCCTCAAAATCGACAACCAA
Found at i:14423236 original size:34 final size:35
Alignment explanation
Indices: 14423192--14423284 Score: 125
Period size: 34 Copynumber: 2.7 Consensus size: 35
14423182 CCAGCCCTTG
* *
14423192 TTTTCTCTCTCAAAATTTGTAGCAAAACTTTTTC-
1 TTTTCCCTCTCAAAATTTGTAGCAAAACTCTTTCT
* *
14423226 TTTTCCCTCTCAAAATTTGCAACAAAACTCTTTCT
1 TTTTCCCTCTCAAAATTTGTAGCAAAACTCTTTCT
* *
14423261 TTTTCCCTCTAAAAAATTGTAGCA
1 TTTTCCCTCTCAAAATTTGTAGCA
14423285 CAAAGCCTCT
Statistics
Matches: 50, Mismatches: 8, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
34 30 0.60
35 20 0.40
ACGTcount: A:0.29, C:0.24, G:0.05, T:0.42
Consensus pattern (35 bp):
TTTTCCCTCTCAAAATTTGTAGCAAAACTCTTTCT
Found at i:14425718 original size:11 final size:11
Alignment explanation
Indices: 14425684--14425724 Score: 57
Period size: 11 Copynumber: 3.7 Consensus size: 11
14425674 GCTAGAGCTG
*
14425684 AAAGAAGAAGAA
1 AAAGAA-AAGCA
14425696 AAAGAAAA-CA
1 AAAGAAAAGCA
14425706 AAAGAAAAGCA
1 AAAGAAAAGCA
14425717 AAAGAAAA
1 AAAGAAAA
14425725 TAAGACAAGC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
10 9 0.33
11 12 0.44
12 6 0.22
ACGTcount: A:0.78, C:0.05, G:0.17, T:0.00
Consensus pattern (11 bp):
AAAGAAAAGCA
Found at i:14431959 original size:22 final size:22
Alignment explanation
Indices: 14431934--14431977 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
14431924 AAGGGGGAGA
*
14431934 TAAAAAGTAGAAGAAATTTAAG
1 TAAAAAATAGAAGAAATTTAAG
*
14431956 TAAAAAATAGAAGTAATTTAAG
1 TAAAAAATAGAAGAAATTTAAG
14431978 GGTAATTTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (22 bp):
TAAAAAATAGAAGAAATTTAAG
Found at i:14432955 original size:73 final size:73
Alignment explanation
Indices: 14432743--14432955 Score: 257
Period size: 73 Copynumber: 2.9 Consensus size: 73
14432733 TTGGTTGGGT
* * * * *
14432743 TCAGAGACAAAGACGACTTAATCGACTAAGAAGCATTGTTAGTCGACTAAGAACTCGCTATTAGA
1 TCAGAAACAAAGAAGACTTAATCGACTAAGAAGCATTGTTAGTCGACTAAGAGCTCACTGTTAGA
14432808 AACTAGGA
66 AACTAGGA
** * * * **
14432816 TTGGAAACAAAGATGACTTAATCGACTAAGAAGCATTGCTAGTCTACTAAGAGCTCACTGCCAGA
1 TCAGAAACAAAGAAGACTTAATCGACTAAGAAGCATTGTTAGTCGACTAAGAGCTCACTGTTAGA
*
14432881 AACTGGGA
66 AACTAGGA
* * * *
14432889 TCAGAAGACAGAGAAGGCTTAATCGACTAAGAAGCA-TGTTAGTCGACTAAGAGCACTCTGTTAG
1 TCAGAA-ACAAAGAAGACTTAATCGACTAAGAAGCATTGTTAGTCGACTAAGAGCTCACTGTTAG
14432953 AAA
65 AAA
14432956 ATTTGAATTT
Statistics
Matches: 116, Mismatches: 23, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
73 90 0.78
74 26 0.22
ACGTcount: A:0.38, C:0.18, G:0.22, T:0.22
Consensus pattern (73 bp):
TCAGAAACAAAGAAGACTTAATCGACTAAGAAGCATTGTTAGTCGACTAAGAGCTCACTGTTAGA
AACTAGGA
Found at i:14436416 original size:42 final size:42
Alignment explanation
Indices: 14436347--14436488 Score: 221
Period size: 42 Copynumber: 3.4 Consensus size: 42
14436337 ACGGCTTATG
* * * *
14436347 CGCATATAGTCGGGTTAGCAACGGCTTATGTGCACTCCCACT
1 CGCACATAGCCGGGTCAGCAACGGCTTATGTGCACTCCTACT
*
14436389 CACACATAGCCGGGTCAGCAACGGCTTATGTGCACTCCTACT
1 CGCACATAGCCGGGTCAGCAACGGCTTATGTGCACTCCTACT
* *
14436431 CGCACATAGCCAGGTCAGCAACGGCTTATGTACACTCCTACT
1 CGCACATAGCCGGGTCAGCAACGGCTTATGTGCACTCCTACT
14436473 CGCACATAGCCGGGTC
1 CGCACATAGCCGGGTC
14436489 CAAATCAACA
Statistics
Matches: 91, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 91 1.00
ACGTcount: A:0.23, C:0.32, G:0.23, T:0.22
Consensus pattern (42 bp):
CGCACATAGCCGGGTCAGCAACGGCTTATGTGCACTCCTACT
Found at i:14447853 original size:33 final size:33
Alignment explanation
Indices: 14447762--14447938 Score: 183
Period size: 33 Copynumber: 5.2 Consensus size: 33
14447752 AGGAAAATAA
*
14447762 GCTTTTTATGGGATCAAGCGAAACCCTCACAAT
1 GCTTTTTATGGGATCAAGCGAAACCCTTACAAT
* * * * *
14447795 AGCTTTTTATGGTATGAAGTGAAACCATTATAAT
1 -GCTTTTTATGGGATCAAGCGAAACCCTTACAAT
* * *
14447829 GCTTTTTACGGGATTAAGCAAAACCCTTACAAT
1 GCTTTTTATGGGATCAAGCGAAACCCTTACAAT
* *
14447862 GCATTTCATGGGATCAAGCGAAACCCTTACAAT
1 GCTTTTTATGGGATCAAGCGAAACCCTTACAAT
* * *
14447895 GCTTTTTCATGAGATCAAGTGAAACCTTTCAACAAT
1 GCTTTTT-ATGGGATCAAGCGAAACCCTT--ACAAT
*
14447931 GGTTTTTA
1 GCTTTTTA
14447939 CAAGCTCAAC
Statistics
Matches: 116, Mismatches: 24, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
33 59 0.51
34 45 0.39
35 1 0.01
36 11 0.09
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32
Consensus pattern (33 bp):
GCTTTTTATGGGATCAAGCGAAACCCTTACAAT
Found at i:14463480 original size:14 final size:14
Alignment explanation
Indices: 14463463--14463501 Score: 62
Period size: 14 Copynumber: 2.8 Consensus size: 14
14463453 TTTTCTTTTT
14463463 TTTATTTCA-TTGGA
1 TTTATTT-ATTTGGA
14463477 TTTATTTATTTGGA
1 TTTATTTATTTGGA
14463491 TTTATTTATTT
1 TTTATTTATTT
14463502 AAGCTTTTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 1 0.04
14 23 0.96
ACGTcount: A:0.21, C:0.03, G:0.10, T:0.67
Consensus pattern (14 bp):
TTTATTTATTTGGA
Found at i:14464833 original size:3 final size:3
Alignment explanation
Indices: 14464825--14464856 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
14464815 TTACTTTCTT
14464825 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
14464857 GTGTGGGCTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:14467487 original size:17 final size:17
Alignment explanation
Indices: 14467465--14467514 Score: 64
Period size: 17 Copynumber: 2.9 Consensus size: 17
14467455 GCATTATTTC
14467465 TTCTTTTTCTTTTTGTT
1 TTCTTTTTCTTTTTGTT
* *
14467482 TTCTTTTTCATTTTATT
1 TTCTTTTTCTTTTTGTT
*
14467499 TTCTATTTTATTTTTG
1 TTCT-TTTTCTTTTTG
14467515 CTTTGAAAAC
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
17 19 0.70
18 8 0.30
ACGTcount: A:0.08, C:0.10, G:0.04, T:0.78
Consensus pattern (17 bp):
TTCTTTTTCTTTTTGTT
Found at i:14469078 original size:24 final size:19
Alignment explanation
Indices: 14469028--14469073 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
14469018 AATTATGCTA
14469028 TTTACTATCAAATCAAAAT
1 TTTACTATCAAATCAAAAT
14469047 TTTACTATCAAATCAAAAT
1 TTTACTATCAAATCAAAAT
*
14469066 TTCACTAT
1 TTTACTAT
14469074 GCTATTTTTC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.43, C:0.17, G:0.00, T:0.39
Consensus pattern (19 bp):
TTTACTATCAAATCAAAAT
Found at i:14482842 original size:78 final size:76
Alignment explanation
Indices: 14482715--14482869 Score: 238
Period size: 78 Copynumber: 2.0 Consensus size: 76
14482705 AAGTTCATGA
* * *
14482715 TACATATCAAGCATAGATCTGAAAAGAGAAAGAGACAGTAATTCCCACAACTAGTGGCAATCATC
1 TACATATCAAGCATAGATCTGAAAAAAGAAAGAGAAAGTAATTCCCACAACCAGTGGCAATCATC
14482780 TAACAATAATC
66 TAACAATAATC
* *
14482791 TACATATCAAGCATATAGATCTGAAAAAATAAAGAGAAAGTAATTCCCACAACCGGTGGCAATCA
1 TACATATCAAGC--ATAGATCTGAAAAAAGAAAGAGAAAGTAATTCCCACAACCAGTGGCAATCA
*
14482856 TCTAACAATTATC
64 TCTAACAATAATC
14482869 T
1 T
14482870 TCTCAAGTTC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
76 12 0.17
78 59 0.83
ACGTcount: A:0.45, C:0.19, G:0.14, T:0.23
Consensus pattern (76 bp):
TACATATCAAGCATAGATCTGAAAAAAGAAAGAGAAAGTAATTCCCACAACCAGTGGCAATCATC
TAACAATAATC
Found at i:14485627 original size:99 final size:99
Alignment explanation
Indices: 14485408--14485608 Score: 357
Period size: 99 Copynumber: 2.0 Consensus size: 99
14485398 CCATCTCCCA
* *
14485408 ACCTTCCACAAATAACAAGTCAAAGGAAACCCAAACCCTACCATTATTGCTCAATGTGCCAAACA
1 ACCTTCCACAAATAGCAAGTCAAAGGAAACCCAAACCCTACCATTATTGCTCAATGCGCCAAACA
*
14485473 CAAAACAAGCTTGCAATTATGGAGAGAATTTTAG
66 CAAAACAAGCTTGCAATAATGGAGAGAATTTTAG
* *
14485507 ACCTTCCACAAATAGCCAGTCAAAGGAAACCCAAACCCTACCATTATTGCTCAATGCGTCAAACA
1 ACCTTCCACAAATAGCAAGTCAAAGGAAACCCAAACCCTACCATTATTGCTCAATGCGCCAAACA
14485572 CAAAACAAGCTTGCAATAATGGAGAGAATTTTAG
66 CAAAACAAGCTTGCAATAATGGAGAGAATTTTAG
14485606 ACC
1 ACC
14485609 CTTTATCAAC
Statistics
Matches: 97, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
99 97 1.00
ACGTcount: A:0.41, C:0.25, G:0.13, T:0.20
Consensus pattern (99 bp):
ACCTTCCACAAATAGCAAGTCAAAGGAAACCCAAACCCTACCATTATTGCTCAATGCGCCAAACA
CAAAACAAGCTTGCAATAATGGAGAGAATTTTAG
Found at i:14499559 original size:20 final size:20
Alignment explanation
Indices: 14499528--14499587 Score: 66
Period size: 20 Copynumber: 3.0 Consensus size: 20
14499518 ATAAAATTAT
*
14499528 TATTCATCAAAAGTTATCAC
1 TATTCATAAAAAGTTATCAC
* * * *
14499548 TATTTATGAAAAGATCATCAT
1 TATTCATAAAAAG-TTATCAC
14499569 TATTCATAAAAAGTTATCA
1 TATTCATAAAAAGTTATCA
14499588 ATTTTGAGTT
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
20 16 0.50
21 16 0.50
ACGTcount: A:0.43, C:0.13, G:0.07, T:0.37
Consensus pattern (20 bp):
TATTCATAAAAAGTTATCAC
Found at i:14500593 original size:32 final size:33
Alignment explanation
Indices: 14500556--14500634 Score: 97
Period size: 33 Copynumber: 2.4 Consensus size: 33
14500546 GAAAAATTTG
*
14500556 ATATTTTCTATTATTTGGAT-AAACTATTAAAA
1 ATATTTTCTATTATTTGGATCAAACTATGAAAA
* ***
14500588 ATATTTTCTATTGTTTGGATCATTTTATGAAAA
1 ATATTTTCTATTATTTGGATCAAACTATGAAAA
*
14500621 ATATTTTCCATTAT
1 ATATTTTCTATTAT
14500635 GGTGGAGTTA
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
32 19 0.49
33 20 0.51
ACGTcount: A:0.34, C:0.08, G:0.08, T:0.51
Consensus pattern (33 bp):
ATATTTTCTATTATTTGGATCAAACTATGAAAA
Found at i:14511247 original size:107 final size:107
Alignment explanation
Indices: 14511116--14511322 Score: 324
Period size: 107 Copynumber: 1.9 Consensus size: 107
14511106 TACAATGAGC
* **
14511116 ATCTATTACGCCATAGATTTGATGATGCTACTTTACTATCATAAACATTAAATAAGGCATCAATA
1 ATCTATTACGCCATAGATTAGATGATGCTACTTTACTATCATAAACATTAAATAAGAAATCAATA
* *
14511181 CAAGTTGAACTAATAGCATTTTTATTAACATTAAGGACATGA
66 CAAGTAGAACTAATAGCATTCTTATTAACATTAAGGACATGA
* * *
14511223 ATCTATTATGCCGTAGATTAGATGATGCTACTTTACTATCATAAACATTAAATGAGAAATCAATA
1 ATCTATTACGCCATAGATTAGATGATGCTACTTTACTATCATAAACATTAAATAAGAAATCAATA
* *
14511288 TAAGTAGAACTAATAGCATTCTTATTAATATTAAG
66 CAAGTAGAACTAATAGCATTCTTATTAACATTAAG
14511323 CTTGAACATG
Statistics
Matches: 90, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
107 90 1.00
ACGTcount: A:0.40, C:0.14, G:0.12, T:0.34
Consensus pattern (107 bp):
ATCTATTACGCCATAGATTAGATGATGCTACTTTACTATCATAAACATTAAATAAGAAATCAATA
CAAGTAGAACTAATAGCATTCTTATTAACATTAAGGACATGA
Found at i:14524220 original size:35 final size:35
Alignment explanation
Indices: 14524181--14524319 Score: 142
Period size: 35 Copynumber: 4.1 Consensus size: 35
14524171 AGTTAGTTTT
**
14524181 AGGTTTTGGTTGATCTTAAGAAAAACCATTGTTAA
1 AGGTTTTGGTTGATCTTGTGAAAAACCATTGTTAA
* * * *
14524216 AGGTTTTGGTTAAGCCTGTGAAAAGCCATT-TT--
1 AGGTTTTGGTTGATCTTGTGAAAAACCATTGTTAA
* *
14524248 GGGTTTTGGTTGATCCCT-TGAAAAACCATTGTTAA
1 AGGTTTTGGTTGAT-CTTGTGAAAAACCATTGTTAA
* * *
14524283 AGGTTGTGGCTGATCTTGTGAAAAGCCATTGTTAA
1 AGGTTTTGGTTGATCTTGTGAAAAACCATTGTTAA
14524318 AG
1 AG
14524320 CTTGGTGGAA
Statistics
Matches: 84, Mismatches: 15, Indels: 10
0.77 0.14 0.09
Matches are distributed among these distances:
32 22 0.26
33 5 0.06
34 4 0.05
35 53 0.63
ACGTcount: A:0.28, C:0.12, G:0.24, T:0.36
Consensus pattern (35 bp):
AGGTTTTGGTTGATCTTGTGAAAAACCATTGTTAA
Found at i:14524270 original size:32 final size:32
Alignment explanation
Indices: 14524217--14524277 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 32
14524207 CATTGTTAAA
* *
14524217 GGTTTTGGTTAAGCCTGTGAAAAGCCATTTTG
1 GGTTTTGGTTAACCCTGTGAAAAACCATTTTG
*
14524249 GGTTTTGGTTGATCCCT-TGAAAAACCATT
1 GGTTTTGGTT-AACCCTGTGAAAAACCATT
14524278 GTTAAAGGTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
32 21 0.84
33 4 0.16
ACGTcount: A:0.23, C:0.15, G:0.25, T:0.38
Consensus pattern (32 bp):
GGTTTTGGTTAACCCTGTGAAAAACCATTTTG
Found at i:14524271 original size:67 final size:66
Alignment explanation
Indices: 14524177--14524312 Score: 184
Period size: 67 Copynumber: 2.0 Consensus size: 66
14524167 AAAAAGTTAG
* *
14524177 TTTTAGGTTTTGGTTGATCTTAAGAAAAACCATTGTTAAAGGTTTTGGTTAAGCCTGTGAAAAGC
1 TTTTAGGTTTTGGTTGATCTT-AGAAAAACCATTGTTAAAGGTTGTGGCTAAGCCTGTGAAAAGC
14524242 CA
65 CA
* * * *
14524244 TTTTGGGTTTTGGTTGATCCCTT-GAAAAACCATTGTTAAAGGTTGTGGCTGATCTTGTGAAAAG
1 TTTTAGGTTTTGGTTGAT--CTTAGAAAAACCATTGTTAAAGGTTGTGGCTAAGCCTGTGAAAAG
14524308 CCA
64 CCA
14524311 TT
1 TT
14524313 GTTAAAGCTT
Statistics
Matches: 61, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
67 58 0.95
69 3 0.05
ACGTcount: A:0.26, C:0.12, G:0.24, T:0.38
Consensus pattern (66 bp):
TTTTAGGTTTTGGTTGATCTTAGAAAAACCATTGTTAAAGGTTGTGGCTAAGCCTGTGAAAAGCC
A
Found at i:14524809 original size:94 final size:94
Alignment explanation
Indices: 14524706--14524876 Score: 236
Period size: 94 Copynumber: 1.8 Consensus size: 94
14524696 TTGCTAGATT
* * *
14524706 TGTTGCCATATATGCATATTCTTCCTAAATAATCTTATGAACCTATATGAGAGAGAGAAAATCT-
1 TGTTACCATATATACACATTCTTCCTAAATAATCTTATGAACCTATATGAGAGA-AGAAAATCTC
14524770 ACTATAAATTATGAAAAAATCTGGAATATA
65 ACTATAAATTATGAAAAAATCTGGAATATA
* * * ** * *
14524800 TGTTACCATATATATACATTTTTCCTTAATCGTCTTATGAACCTCTATGAGAGAAGCAAATCTCA
1 TGTTACCATATATACACATTCTTCCTAAATAATCTTATGAACCTATATGAGAGAAGAAAATCTCA
14524865 CTATAAATTATG
66 CTATAAATTATG
14524877 CCGGTTAACT
Statistics
Matches: 66, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
93 8 0.12
94 58 0.88
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (94 bp):
TGTTACCATATATACACATTCTTCCTAAATAATCTTATGAACCTATATGAGAGAAGAAAATCTCA
CTATAAATTATGAAAAAATCTGGAATATA
Found at i:14525717 original size:54 final size:55
Alignment explanation
Indices: 14525549--14525762 Score: 177
Period size: 54 Copynumber: 3.9 Consensus size: 55
14525539 TGCTCGCTCC
* * ** ** * *
14525549 TCCTACTCAACAAAGGGATAATC-GAGACCCTACTGATGATATTGTGATTGT-TCC
1 TCCTGCTCAACAAAGGGATAATCAGAAACCCTACTGATGGCATCATGCTT-TCTCA
* * * **
14525603 TCCTGCTCAACAAAGGGATAATCGAAATGGAAACCTTACAGATGGCATCGTGCTCACTCA
1 TCCTGCTCAACAAAGGGATAATC---A--GAAACCCTACTGATGGCATCATGCTTTCTCA
* *
14525663 TCCTGCTCAACAAAGGGATAATC-GAAACCTTATTGATGGCATCATGCTTTCTCA
1 TCCTGCTCAACAAAGGGATAATCAGAAACCCTACTGATGGCATCATGCTTTCTCA
* *
14525717 TCTTGCTCAACAAAAGGATAA-CTA-AAACCCTACTGATGGCATCATG
1 TCCTGCTCAACAAAGGGATAATC-AGAAACCCTACTGATGGCATCATG
14525763 TTGGTTTTTC
Statistics
Matches: 131, Mismatches: 20, Indels: 18
0.78 0.12 0.11
Matches are distributed among these distances:
53 1 0.01
54 87 0.66
60 43 0.33
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (55 bp):
TCCTGCTCAACAAAGGGATAATCAGAAACCCTACTGATGGCATCATGCTTTCTCA
Found at i:14528682 original size:99 final size:102
Alignment explanation
Indices: 14528573--14528793 Score: 263
Period size: 104 Copynumber: 2.2 Consensus size: 102
14528563 TAAATAACAG
* * *
14528573 AAATGACATTCAGTATAATTACAAGTG-C-TA-TAACCATTTAACAAAGCTCCACTCCACCTTCC
1 AAATGCCATTCAGTAGAACTACAAGTGTCATACTAACCATTTAACAAAGCTCCACTCCACCTTCC
* * *
14528635 -AACAAAGTG-CAGCTCGAGACTTCATCCATAATTACAA
66 AAACAAAGTGCCA-CCCGAGAATTCACCCATAATTA-AA
* * * * *
14528672 AAATGCCATTCACTAGGACTACAAGTGTCATACTTCACCATTTAACAAAGCTTCACTCCATCTTC
1 AAATGCCATTCAGTAGAACTACAAGTGTCATAC-TAACCATTTAACAAAGCTCCACTCCACCTTC
*
14528737 CAAACAAGGTGCCACCCGAGAATTCACCCATAATTAAA
65 CAAACAAAGTGCCACCCGAGAATTCACCCATAATTAAA
14528775 ACAATGCCATTCAGTAGAA
1 A-AATGCCATTCAGTAGAA
14528794 ATTCACATGA
Statistics
Matches: 101, Mismatches: 14, Indels: 9
0.81 0.11 0.07
Matches are distributed among these distances:
99 22 0.22
100 1 0.01
101 2 0.02
103 32 0.32
104 42 0.42
105 2 0.02
ACGTcount: A:0.38, C:0.27, G:0.11, T:0.24
Consensus pattern (102 bp):
AAATGCCATTCAGTAGAACTACAAGTGTCATACTAACCATTTAACAAAGCTCCACTCCACCTTCC
AAACAAAGTGCCACCCGAGAATTCACCCATAATTAAA
Found at i:14531786 original size:13 final size:13
Alignment explanation
Indices: 14531768--14531796 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
14531758 CATTGGTGAT
14531768 TGTTAAGTTTTTG
1 TGTTAAGTTTTTG
14531781 TGTTAAGTTTTTG
1 TGTTAAGTTTTTG
14531794 TGT
1 TGT
14531797 GATTGTTGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.14, C:0.00, G:0.24, T:0.62
Consensus pattern (13 bp):
TGTTAAGTTTTTG
Found at i:14532670 original size:15 final size:13
Alignment explanation
Indices: 14532641--14532666 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
14532631 CTGTGGTGGT
14532641 AGAGAGAAGAGGA
1 AGAGAGAAGAGGA
14532654 AGAGAGAAGAGGA
1 AGAGAGAAGAGGA
14532667 GAAGGGTGCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.46, T:0.00
Consensus pattern (13 bp):
AGAGAGAAGAGGA
Found at i:14532721 original size:20 final size:21
Alignment explanation
Indices: 14532685--14532725 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
14532675 CGATGCCGGT
*
14532685 AAGGAGAAAAGAGAGAAAGAG
1 AAGGAGAAAAGAAAGAAAGAG
14532706 AAGGAG-AAAGAAAGAAAGAG
1 AAGGAGAAAAGAAAGAAAGAG
14532726 GAAAAAGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (21 bp):
AAGGAGAAAAGAAAGAAAGAG
Found at i:14532732 original size:17 final size:16
Alignment explanation
Indices: 14532698--14532738 Score: 55
Period size: 17 Copynumber: 2.5 Consensus size: 16
14532688 GAGAAAAGAG
* *
14532698 AGAAAGAGAAGGAGAA
1 AGAAAGAAAAGGAAAA
14532714 AGAAAGAAAGAGGAAAA
1 AGAAAGAAA-AGGAAAA
14532731 AGAAAGAA
1 AGAAAGAA
14532739 GAAGCCAGCG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 8 0.36
17 14 0.64
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (16 bp):
AGAAAGAAAAGGAAAA
Found at i:14532740 original size:20 final size:19
Alignment explanation
Indices: 14532692--14532741 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 19
14532682 GGTAAGGAGA
**
14532692 AAAGAGAGAAAGAGAAGGAG
1 AAAGA-AGAAAGAGAAAAAG
14532712 AAAGAAAGAAAGAGGAAAAAG
1 AAAG-AAGAAAGA-GAAAAAG
14532733 AAAGAAGAA
1 AAAGAAGAA
14532742 GCCAGCGGGG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
20 16 0.62
21 10 0.38
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (19 bp):
AAAGAAGAAAGAGAAAAAG
Done.