Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38630433
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 2298367 characters in sequence are not A, C, G, or T
File 35 of 97
Found at i:14532779 original size:72 final size:72
Alignment explanation
Indices: 14532690--14532837 Score: 199
Period size: 72 Copynumber: 2.1 Consensus size: 72
14532680 CCGGTAAGGA
* * * * *
14532690 GAAAAGAGAGAAAGAGAAGGAGAAAGAAAGA-AAGAGGAAAAAGAAAGAAGAAGCCAGCGGGGAG
1 GAAAAGAGAGAAAGAGAA-GAAAAAAAAAGAGAAAAAGAAAAAGAAAGAAGAAGCCAGCAGGGAG
14532754 AGAGAAAG
65 AGAGAAAG
* * *
14532762 GAAATGAGAGAAAGAGAAGAAAAAAAAAGAGAAAAAGAAAAAGAAAGAAGAAGTCGGCAGGGAGA
1 GAAAAGAGAGAAAGAGAAGAAAAAAAAAGAGAAAAAGAAAAAGAAAGAAGAAGCCAGCAGGGAGA
*
14532827 GAGATAG
66 GAGAAAG
14532834 GAAA
1 GAAA
14532838 GGGATAACGA
Statistics
Matches: 66, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
71 10 0.15
72 56 0.85
ACGTcount: A:0.60, C:0.03, G:0.34, T:0.02
Consensus pattern (72 bp):
GAAAAGAGAGAAAGAGAAGAAAAAAAAAGAGAAAAAGAAAAAGAAAGAAGAAGCCAGCAGGGAGA
GAGAAAG
Found at i:14532792 original size:15 final size:15
Alignment explanation
Indices: 14532772--14532810 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
14532762 GAAATGAGAG
14532772 AAAGAGAAGAAAAAA
1 AAAGAGAAGAAAAAA
*
14532787 AAAGAGAA-AAAGAA
1 AAAGAGAAGAAAAAA
14532801 AAAGA-AAGAA
1 AAAGAGAAGAA
14532811 GAAGTCGGCA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
13 2 0.09
14 12 0.55
15 8 0.36
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (15 bp):
AAAGAGAAGAAAAAA
Found at i:14533810 original size:16 final size:16
Alignment explanation
Indices: 14533767--14533812 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
14533757 ATCTAAATAG
*
14533767 AAAATAGAAAAAATAA-
1 AAAATA-AATAAATAAT
14533783 AAAA-AAAT-AATAAT
1 AAAATAAATAAATAAT
14533797 AAAATAAATAAATAAT
1 AAAATAAATAAATAAT
14533813 CCATGAAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
13 5 0.19
14 6 0.23
15 5 0.19
16 10 0.38
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (16 bp):
AAAATAAATAAATAAT
Found at i:14548061 original size:14 final size:15
Alignment explanation
Indices: 14548029--14548078 Score: 54
Period size: 14 Copynumber: 3.5 Consensus size: 15
14548019 GTATGGATCT
14548029 AAATAGAAAATAGAA-A
1 AAATA-AAAATA-AATA
14548045 AAATAAAAA-AAATA
1 AAATAAAAATAAATA
14548059 AAA-AAAAATAAAT-
1 AAATAAAAATAAATA
14548072 AAATAAA
1 AAATAAA
14548079 TAATCCATGA
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
13 10 0.32
14 12 0.39
15 4 0.13
16 5 0.16
ACGTcount: A:0.82, C:0.00, G:0.04, T:0.14
Consensus pattern (15 bp):
AAATAAAAATAAATA
Found at i:14551091 original size:22 final size:21
Alignment explanation
Indices: 14551053--14551097 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
14551043 AATTTAGTAA
14551053 AAATTTAACCTACTTAACAATT
1 AAATTTAACCTACTTAA-AATT
*
14551075 AAATTTAATCGTA-TTAAAATT
1 AAATTTAA-CCTACTTAAAATT
14551096 AA
1 AA
14551098 TAAATTGATC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 6 0.29
22 12 0.57
23 3 0.14
ACGTcount: A:0.49, C:0.11, G:0.02, T:0.38
Consensus pattern (21 bp):
AAATTTAACCTACTTAAAATT
Found at i:14570148 original size:33 final size:33
Alignment explanation
Indices: 14570096--14570168 Score: 94
Period size: 33 Copynumber: 2.2 Consensus size: 33
14570086 TACTAATATG
* * * *
14570096 ACATGTTGATATATCATAATTGATGATGACA-T
1 ACATATTGACATATAATAATTGATAATGACATT
14570128 AGCATATTGACATATAATAATTGATAATGACATT
1 A-CATATTGACATATAATAATTGATAATGACATT
14570162 ACATATT
1 ACATATT
14570169 AATGTAACAT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
32 1 0.03
33 32 0.91
34 2 0.06
ACGTcount: A:0.41, C:0.10, G:0.12, T:0.37
Consensus pattern (33 bp):
ACATATTGACATATAATAATTGATAATGACATT
Found at i:14576764 original size:15 final size:17
Alignment explanation
Indices: 14576744--14576776 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
14576734 ATTGTAATCA
14576744 ATAA-TTTTATAA-GTT
1 ATAATTTTTATAATGTT
14576759 ATAATTTTTATAATGTT
1 ATAATTTTTATAATGTT
14576776 A
1 A
14576777 ACTCAAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.25
16 8 0.50
17 4 0.25
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (17 bp):
ATAATTTTTATAATGTT
Found at i:14576822 original size:2 final size:2
Alignment explanation
Indices: 14576815--14576854 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
14576805 ATTTAAAGTG
14576815 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
14576855 NATTCCTCAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:14577096 original size:338 final size:340
Alignment explanation
Indices: 14576394--14577512 Score: 1454
Period size: 343 Copynumber: 3.3 Consensus size: 340
14576384 TATTTCAAAC
* *
14576394 ATAATTAATAATTTTATAAGTTATAATTTTTGTAATGTTAACACAAAATAAAAAGTAAATATACT
1 ATAATTAATAATTTTATAAGTTATAATTTTTATAATGTTAACACAAAATAAAAAGTAAATATATT
* * * *
14576459 TATATTTAAA--ATGTATATATACTAAAAGCATTTTAGTATATA-AAATAGTAATTATATTTCTT
66 TATATTTAAAGTATATATATATA-TAAAA-TATTATA-TATATATATATA-T-ATTATATTTCTT
* * * **
14576521 ATAAATGAACCCAATGTATATAAAGAATATATATTAAAAGACATTACAAGCAAATTAATAATCAT
126 ATAAATGAACACAATATATAT-AACAATATATATTAAAAGACATTACAAGTTAATTAATAATCAT
* *
14576586 AGTTTCATTAATTAATTTAATTAACTATAAGT-GTTTGTCCTTAATTACATGAAATTAAAAAAAA
190 AGTTTCATGAATTAATTTAATTAACTAT-ATTAGTTTGTCCTTAATTACATGAAATTAAAAAAAA
*
14576650 ATAACTAGGTTTCAAAACTATTCTGATCTCACAACTTCTCTTT-AGATTTATATATTATAAGTTT
254 ATAACTAGGTTTCAAAACTATTCTAATCTCACAACTTCTCTTTAAG-TTTATATATTATAAGTTT
*
14576714 ATATAAACAAAAGTATATATATT
318 ATATAAACAAATGTATATATATT
* * * * * *
14576737 GTAATCAATAATTTTATAAGTTATAATTTTTATAATGTTAACTCAAAATAGATAGTAAATATGTT
1 ATAATTAATAATTTTATAAGTTATAATTTTTATAATGTTAACACAAAATAAAAAGTAAATATATT
* * * * *
14576802 TATATTTAAAGTGTATATATATAT-ATATATATATATATATATATATATATATANATTCCTCATA
66 TATATTTAAAGTATATATATATATAAAATAT-TATATATATATATATATAT-TATATTTCTTATA
** * * *
14576866 AATGAACTTAATATATATAA-AATATATATTAAAAGATATTAGAAGTTAATTAATAATTATAGTT
129 AATGAACACAATATATATAACAATATATATTAAAAGACATTACAAGTTAATTAATAATCATAGTT
* * *
14576930 TCATGAATTAATTTAATTAATTATATTAGTTTGTCTTTAATTACATAAAATT-AAAAAAAA-AAC
194 TCATGAATTAATTTAATTAACTATATTAGTTTGTCCTTAATTACATGAAATTAAAAAAAAATAAC
* * *
14576993 TAGGTTTGAAAACTGTTCTAATCTCACAACTTCTCTTTAAGTTCATATATTATAAGTTTATATAA
259 TAGGTTTCAAAACTATTCTAATCTCACAACTTCTCTTTAAGTTTATATATTATAAGTTTATATAA
14577058 ACAAATGTATATATATT
324 ACAAATGTATATATATT
* * *
14577075 ATAATTAATAATTTTATAAGTTATAATTTTTTTAATGTTAACACAAAATAGAAAGTAAATATTTT
1 ATAATTAATAATTTTATAAGTTATAATTTTTATAATGTTAACACAAAATAAAAAGTAAATATATT
* * * * *
14577140 TATATATAAAGTATATATATA-ATAAAACTATTTTAGTATTTGTAAAATAGTAATTATATTTCTT
66 TATATTTAAAGTATATATATATATAAAA-TATTATA-TATATAT-ATATA-T-ATTATATTTCTT
*
14577204 ATAAATTAACACAATATATA-AACTATATATATATTAAAAGACATTACAAGTTAATTAATAATCA
126 ATAAATGAACACAATATATATAAC-A-ATATATATTAAAAGACATTACAAGTTAATTAATAATCA
* * * *
14577268 TATTTTCATGAATTAATTTAATTAACTATATGAATTTGTCCTTAATTTCATGAAATTAAAAAAAA
189 TAGTTTCATGAATTAATTTAATTAACTATATTAGTTTGTCCTTAATTACATGAAATTAAAAAAAA
* * *
14577333 ATAATTAGGTTTCAAAACTATTCTAATATCAAAAGC-TCTCTTTAAGTATATATATATTATAAGT
254 ATAACTAGGTTTCAAAACTATTCTAATCTCACAA-CTTCTCTTTAAGT-T-TATATATTATAAGT
*
14577397 TTATATAAA-TAATGGTATATATATT
316 TTATATAAACAAAT-GTATATATATT
*
14577422 ATGATTAATAATTTTATAAGTTATAATTTTTATAATGTTAACACAAAATAAAAAGTAAATATATT
1 ATAATTAATAATTTTATAAGTTATAATTTTTATAATGTTAACACAAAATAAAAAGTAAATATATT
*
14577487 TATATTAAAAGTATATATATATATAA
66 TATATTTAAAGTATATATATATATAA
14577513 TAGTAATTAT
Statistics
Matches: 676, Mismatches: 77, Indels: 41
0.85 0.10 0.05
Matches are distributed among these distances:
337 2 0.00
338 160 0.24
339 20 0.03
340 89 0.13
341 29 0.04
342 37 0.05
343 161 0.24
344 9 0.01
345 47 0.07
346 5 0.01
347 113 0.17
348 4 0.01
ACGTcount: A:0.45, C:0.07, G:0.07, T:0.41
Consensus pattern (340 bp):
ATAATTAATAATTTTATAAGTTATAATTTTTATAATGTTAACACAAAATAAAAAGTAAATATATT
TATATTTAAAGTATATATATATATAAAATATTATATATATATATATATATTATATTTCTTATAAA
TGAACACAATATATATAACAATATATATTAAAAGACATTACAAGTTAATTAATAATCATAGTTTC
ATGAATTAATTTAATTAACTATATTAGTTTGTCCTTAATTACATGAAATTAAAAAAAAATAACTA
GGTTTCAAAACTATTCTAATCTCACAACTTCTCTTTAAGTTTATATATTATAAGTTTATATAAAC
AAATGTATATATATT
Found at i:14577447 original size:15 final size:17
Alignment explanation
Indices: 14577429--14577461 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
14577419 ATTATGATTA
14577429 ATAA-TTTTATAA-GTT
1 ATAATTTTTATAATGTT
14577444 ATAATTTTTATAATGTT
1 ATAATTTTTATAATGTT
14577461 A
1 A
14577462 ACACAAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.25
16 8 0.50
17 4 0.25
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (17 bp):
ATAATTTTTATAATGTT
Found at i:14577497 original size:21 final size:21
Alignment explanation
Indices: 14577472--14577511 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
14577462 ACACAAAATA
*
14577472 AAAAGTAAATATATTTATATT
1 AAAAGTAAATATATATATATT
*
14577493 AAAAGTATATATATATATA
1 AAAAGTAAATATATATATA
14577512 ATAGTAATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (21 bp):
AAAAGTAAATATATATATATT
Found at i:14578667 original size:33 final size:33
Alignment explanation
Indices: 14578620--14578704 Score: 116
Period size: 33 Copynumber: 2.6 Consensus size: 33
14578610 ATCCCTTTTG
* *
14578620 TTCCCCATTGCATGTAATTGATGTATCTATTTC
1 TTCCTCATTGCATGTAATTAATGTATCTATTTC
* * *
14578653 TTCCTCATTGCATGTAACTAATTTATTTATTTC
1 TTCCTCATTGCATGTAATTAATGTATCTATTTC
*
14578686 TTCCTCATTACATGTAATT
1 TTCCTCATTGCATGTAATT
14578705 CATTACAAAA
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 45 1.00
ACGTcount: A:0.24, C:0.20, G:0.08, T:0.48
Consensus pattern (33 bp):
TTCCTCATTGCATGTAATTAATGTATCTATTTC
Found at i:14580923 original size:42 final size:42
Alignment explanation
Indices: 14580864--14580946 Score: 103
Period size: 42 Copynumber: 2.0 Consensus size: 42
14580854 AAGGGAAGTT
** *
14580864 TAAAACTCATTTGAACAAGTTCAAAACTCAATCAAGTAATTA
1 TAAAACTCATTCAAACAAGTTCAAAACTCAATCAAGCAATTA
* ** *
14580906 TAAAACTCATTCAAACAATTTTGAAACTCATTCAAGCAATT
1 TAAAACTCATTCAAACAAGTTCAAAACTCAATCAAGCAATT
14580947 TTGATCATTT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.46, C:0.18, G:0.06, T:0.30
Consensus pattern (42 bp):
TAAAACTCATTCAAACAAGTTCAAAACTCAATCAAGCAATTA
Found at i:14580947 original size:21 final size:21
Alignment explanation
Indices: 14580887--14580950 Score: 83
Period size: 21 Copynumber: 3.0 Consensus size: 21
14580877 AACAAGTTCA
* * * *
14580887 AAACTCAATCAAGTAATTATA
1 AAACTCATTCAAGCAATTTTG
*
14580908 AAACTCATTCAAACAATTTTG
1 AAACTCATTCAAGCAATTTTG
14580929 AAACTCATTCAAGCAATTTTG
1 AAACTCATTCAAGCAATTTTG
14580950 A
1 A
14580951 TCATTTTTGT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.45, C:0.17, G:0.06, T:0.31
Consensus pattern (21 bp):
AAACTCATTCAAGCAATTTTG
Found at i:14583721 original size:19 final size:18
Alignment explanation
Indices: 14583697--14583747 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 18
14583687 CTTGATTGAA
14583697 TTTCTTTTGTTCTTTCTT
1 TTTCTTTTGTTCTTTCTT
14583715 CTTTC-TTT-TTCTTT-TT
1 -TTTCTTTTGTTCTTTCTT
14583731 TTT-TTTTGTT-TTTCTT
1 TTTCTTTTGTTCTTTCTT
14583747 T
1 T
14583748 CCATAAAATG
Statistics
Matches: 29, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
15 9 0.31
16 7 0.24
17 6 0.21
18 3 0.10
19 4 0.14
ACGTcount: A:0.00, C:0.14, G:0.04, T:0.82
Consensus pattern (18 bp):
TTTCTTTTGTTCTTTCTT
Found at i:14588666 original size:20 final size:20
Alignment explanation
Indices: 14588630--14588687 Score: 75
Period size: 20 Copynumber: 3.0 Consensus size: 20
14588620 TTGTCTAAAG
*
14588630 TAATTATTTGAAATAAAATTA
1 TAATTATTTG-AATAAAATAA
*
14588651 TAATTGTTTGAATAAAATAA
1 TAATTATTTGAATAAAATAA
14588671 TAA-TATTT-AATAAAATA
1 TAATTATTTGAATAAAATA
14588688 TTCTATTTTC
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
18 9 0.26
19 4 0.12
20 12 0.35
21 9 0.26
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.41
Consensus pattern (20 bp):
TAATTATTTGAATAAAATAA
Found at i:14591077 original size:19 final size:19
Alignment explanation
Indices: 14591053--14591090 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
14591043 CTGCCAAACC
*
14591053 CTCAAATTATACTCCAATA
1 CTCAAATCATACTCCAATA
*
14591072 CTCAAATCATATTCCAATA
1 CTCAAATCATACTCCAATA
14591091 AGTTAAATGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.42, C:0.26, G:0.00, T:0.32
Consensus pattern (19 bp):
CTCAAATCATACTCCAATA
Found at i:14593237 original size:16 final size:17
Alignment explanation
Indices: 14593207--14593240 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
14593197 TATAAACCAA
*
14593207 TTTTTATTTATTTAGTT
1 TTTTTATTTAGTTAGTT
14593224 TTTTTATTT-GTTAGTT
1 TTTTTATTTAGTTAGTT
14593240 T
1 T
14593241 AATTTACGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.15, C:0.00, G:0.09, T:0.76
Consensus pattern (17 bp):
TTTTTATTTAGTTAGTT
Found at i:14596139 original size:16 final size:16
Alignment explanation
Indices: 14596118--14596149 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
14596108 TCATGAGTTA
14596118 AAATATTTTAAATATT
1 AAATATTTTAAATATT
*
14596134 AAATATTTTGAATATT
1 AAATATTTTAAATATT
14596150 GACGTAAAGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (16 bp):
AAATATTTTAAATATT
Found at i:14598430 original size:2 final size:2
Alignment explanation
Indices: 14598423--14598448 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
14598413 AGAAAGTTAA
14598423 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
14598449 TTGTTTTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14602243 original size:124 final size:125
Alignment explanation
Indices: 14602032--14602272 Score: 412
Period size: 124 Copynumber: 1.9 Consensus size: 125
14602022 TTGAGGGAGT
* * *
14602032 AAAAATAAAAAATTTAATATTTGAAGGGATAAAATTATAAAAGTTTTTTAAAAAATAAGGGTAAA
1 AAAAACAAAAAATTTAATATTTGAAGGGACAAAATTATAAAAGTTTTTTAAAAAATAAGAGTAAA
*
14602097 ATTATAAAATTTTAAAACAAAACAAAGACAAAATTATAAATTTTTGAAACTTGGCAAGGC
66 ATTATAAAATTTTAAAACAAAACAAAGACAAAATTATAAAATTTTGAAACTTGGCAAGGC
* *
14602157 AAAAACAAAAAATTTAATATTTGAAGGGACGAAATTAT-AAATTTTTTTAAAAAATAAGAGTAAA
1 AAAAACAAAAAATTTAATATTTGAAGGGACAAAATTATAAAAGTTTTTTAAAAAATAAGAGTAAA
*
14602221 ATTATAAAATTTTAAAATAAAACAAAGACAAAATTATAAAATTTTGAAACTT
66 ATTATAAAATTTTAAAACAAAACAAAGACAAAATTATAAAATTTTGAAACTT
14602273 TAGGGGTCTG
Statistics
Matches: 109, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
124 74 0.68
125 35 0.32
ACGTcount: A:0.56, C:0.05, G:0.10, T:0.30
Consensus pattern (125 bp):
AAAAACAAAAAATTTAATATTTGAAGGGACAAAATTATAAAAGTTTTTTAAAAAATAAGAGTAAA
ATTATAAAATTTTAAAACAAAACAAAGACAAAATTATAAAATTTTGAAACTTGGCAAGGC
Found at i:14602835 original size:2 final size:2
Alignment explanation
Indices: 14602830--14602857 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
14602820 TGTATATATA
14602830 TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG
14602858 CGCGAGCATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:14603644 original size:102 final size:101
Alignment explanation
Indices: 14603418--14603648 Score: 297
Period size: 103 Copynumber: 2.3 Consensus size: 101
14603408 CATTAGGTGC
*
14603418 CTGAATATTTGTTGAGCAATGCGTGAGTTCTTTATAGGCATTACGTGACTGAATATATGTTGAGC
1 CTGAATATTTGTTGAGCATTGCGTGAGTTCTTTATAGGCATTACGTGACTGAATATATGTTGAGC
* * *
14603483 GTTGTGTGACAGTTAAAACGTGACTGAATATTGCCTGA
66 ATTGCGTGACAGTT--AACGTGACTGAATATTACCTGA
* * *
14603521 CTAAATATTCGTTGAGCATTGCGTGAGTTCTTTATAGGCATTACGTGACTGAATATTTGTT-AGC
1 CTGAATATTTGTTGAGCATTGCGTGAGTTCTTTATAGGCATTACGTGACTGAATATATGTTGAGC
**
14603585 ATTGCGTGACAAGCGTT-ACGTGACAT-AATATTATGTGA
66 ATTGCGTGAC-A--GTTAACGTGAC-TGAATATTACCTGA
*
14603623 TTGAATATTTGTTGAGCATTGCGTGA
1 CTGAATATTTGTTGAGCATTGCGTGA
14603649 CTTTAGCTAC
Statistics
Matches: 112, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
102 50 0.45
103 59 0.53
105 3 0.03
ACGTcount: A:0.27, C:0.13, G:0.24, T:0.36
Consensus pattern (101 bp):
CTGAATATTTGTTGAGCATTGCGTGAGTTCTTTATAGGCATTACGTGACTGAATATATGTTGAGC
ATTGCGTGACAGTTAACGTGACTGAATATTACCTGA
Found at i:14607209 original size:30 final size:30
Alignment explanation
Indices: 14607173--14607232 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
14607163 GGAAGTGCCT
*
14607173 TTGAGTGTGAGGAACTAGTTGCACATATTC
1 TTGAGTGTGAGGAACCAGTTGCACATATTC
* *
14607203 TTGAGTGTGAGGGACCAGTTGCATATATTC
1 TTGAGTGTGAGGAACCAGTTGCACATATTC
14607233 CAGCAGGAGA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.25, C:0.13, G:0.28, T:0.33
Consensus pattern (30 bp):
TTGAGTGTGAGGAACCAGTTGCACATATTC
Found at i:14607997 original size:111 final size:111
Alignment explanation
Indices: 14607867--14608242 Score: 420
Period size: 111 Copynumber: 3.3 Consensus size: 111
14607857 GGTGCGTGAC
* * *
14607867 TGACTTGTGTAATTCATGTGTTGCTTTGAGACTTTTGTTCAGTA-CTTTTTAGGCAGTGCGTGAC
1 TGACTTGTGCAATTCATGTGTTG-TTTGAGACTTTTGTTCAGTAGTTTTTTAGGCATTGCGTGAC
*
14607931 TTGTTTTTATATATTGCGTTACCTGTTGTAACGAGAGTGGTGGCGCA
65 TTGTTTTTATATATTGCGTTACCTGTTGTAACGAGAGTGGTGGCACA
*
14607978 TGACTTGTGCAATTCATGTGTTGTTTTGA-AGCTTTTGTTCAGTAGTTTTTTAGGC-TTGTGTGA
1 TGACTTGTGCAATTCATGTGTTG-TTTGAGA-CTTTTGTTCAGTAGTTTTTTAGGCATTGCGTGA
* * * * * * *
14608041 GTGGTTTCTATATATTGCGTTACCTGTTGTAGCGTGAGTGGTGGTACG
64 CTTGTTTTTATATATTGCGTTACCTGTTGTAACGAGAGTGGTGGCACA
* * *
14608089 TGACTTGTGCAATTTATGTGTTGTTTAGAGGCTTTTGTTCAGTAGTTTTTTAAG-ATTGCGTGAC
1 TGACTTGTGCAATTCATGTGTTGTTT-GAGACTTTTGTTCAGTAGTTTTTTAGGCATTGCGTGAC
* * *
14608153 -TGATTTTTATATATTGCGTTACCTATTGTTATGTATTGCGAGAGTGGTTGCACG
65 TTG-TTTTTATATATTGCGTTACC---TG-T-TGTA--ACGAGAGTGGTGGCACA
* *
14608207 TGACTTGTGTAATTCATGTGTTGTTTAGAGGCTTTT
1 TGACTTGTGCAATTCATGTGTTGTTT-GAGACTTTT
14608243 TGTCACTACC
Statistics
Matches: 227, Mismatches: 25, Indels: 19
0.84 0.09 0.07
Matches are distributed among these distances:
110 5 0.02
111 158 0.70
112 9 0.04
114 2 0.01
115 1 0.00
116 4 0.02
118 48 0.21
ACGTcount: A:0.18, C:0.11, G:0.26, T:0.45
Consensus pattern (111 bp):
TGACTTGTGCAATTCATGTGTTGTTTGAGACTTTTGTTCAGTAGTTTTTTAGGCATTGCGTGACT
TGTTTTTATATATTGCGTTACCTGTTGTAACGAGAGTGGTGGCACA
Found at i:14621847 original size:36 final size:36
Alignment explanation
Indices: 14621800--14621875 Score: 143
Period size: 36 Copynumber: 2.1 Consensus size: 36
14621790 TAAGAACAAA
14621800 TACAAATATGTCTCAATCAACAAAAATTTGAGTTAT
1 TACAAATATGTCTCAATCAACAAAAATTTGAGTTAT
*
14621836 TACAAATATGTCTCAATCAACATAAATTTGAGTTAT
1 TACAAATATGTCTCAATCAACAAAAATTTGAGTTAT
14621872 TACA
1 TACA
14621876 TCCATTGGTT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.43, C:0.14, G:0.08, T:0.34
Consensus pattern (36 bp):
TACAAATATGTCTCAATCAACAAAAATTTGAGTTAT
Found at i:14623663 original size:23 final size:23
Alignment explanation
Indices: 14623633--14623689 Score: 78
Period size: 23 Copynumber: 2.5 Consensus size: 23
14623623 AAAATAGGTG
* *
14623633 AGTCACGCGATGCAAGATCATCT
1 AGTCACGCGATCCAAGATCATAT
* *
14623656 AGTCACGCGATCCCATATCATAT
1 AGTCACGCGATCCAAGATCATAT
14623679 AGTCACGCGAT
1 AGTCACGCGAT
14623690 TCAATAAGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (23 bp):
AGTCACGCGATCCAAGATCATAT
Found at i:14623737 original size:23 final size:23
Alignment explanation
Indices: 14623706--14623750 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
14623696 AGAATTTGTA
*
14623706 ACGCCACTCCATACATACTACTC
1 ACGCCACTCCATACAAACTACTC
* *
14623729 ACGCGACTCCATATAAACTACT
1 ACGCCACTCCATACAAACTACT
14623751 AATGTAATTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.33, C:0.38, G:0.07, T:0.22
Consensus pattern (23 bp):
ACGCCACTCCATACAAACTACTC
Found at i:14627769 original size:23 final size:23
Alignment explanation
Indices: 14627742--14627786 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
14627732 CGTGCAATTT
14627742 CCTACAACAA-TAGTCACGCAATG
1 CCTAC-ACAATTAGTCACGCAATG
* *
14627765 CCTACTCAATTAGTCATGCAAT
1 CCTACACAATTAGTCACGCAAT
14627787 TACTAACATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 3 0.16
23 16 0.84
ACGTcount: A:0.36, C:0.29, G:0.11, T:0.24
Consensus pattern (23 bp):
CCTACACAATTAGTCACGCAATG
Found at i:14629830 original size:65 final size:65
Alignment explanation
Indices: 14629727--14629849 Score: 185
Period size: 65 Copynumber: 1.9 Consensus size: 65
14629717 TCCCCTTTTT
* *
14629727 TTTTTTTGGGTTTTTGGTAATAATATGTTACAAATAACATATGAAAACTCAATAATTTTTTATTC
1 TTTTTTTGGGTTTTTGGTAATAATATGTTACAAATAACATATGAAAACCCAACAATTTTTTATTC
* * *
14629792 TTTTTTT-GGTTTTATTGTAATAATTTGTTACAAATAACATGTGAAAACCCAACAATTT
1 TTTTTTTGGGTTTT-TGGTAATAATATGTTACAAATAACATATGAAAACCCAACAATTT
14629850 CATTATATCA
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
64 6 0.12
65 46 0.88
ACGTcount: A:0.34, C:0.09, G:0.11, T:0.46
Consensus pattern (65 bp):
TTTTTTTGGGTTTTTGGTAATAATATGTTACAAATAACATATGAAAACCCAACAATTTTTTATTC
Found at i:14640184 original size:10 final size:10
Alignment explanation
Indices: 14640165--14640197 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
14640155 AAAAAGAAGG
*
14640165 TTTTTTGCTC
1 TTTTTGGCTC
14640175 TTTTTGGCTC
1 TTTTTGGCTC
14640185 TTTTTGGCTC
1 TTTTTGGCTC
14640195 TTT
1 TTT
14640198 CTCTCTCTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.00, C:0.18, G:0.15, T:0.67
Consensus pattern (10 bp):
TTTTTGGCTC
Found at i:14644239 original size:32 final size:32
Alignment explanation
Indices: 14644198--14644323 Score: 123
Period size: 32 Copynumber: 3.8 Consensus size: 32
14644188 CCTTTAGCAA
* *
14644198 TGGTTTTTCACAAGATCAACAAAAACCCAAAG
1 TGGTTTTTCACAAGCTCAACCAAAACCCAAAG
*
14644230 TGGTTTTTCA-AAGGCTCAACCATAACCTTTCACAA-
1 TGGTTTTTCACAA-GCTCAACCAAAACC---CA-AAG
**
14644265 TGGTTTTTCACGGGCTCAACCAAAACCCAAAG
1 TGGTTTTTCACAAGCTCAACCAAAACCCAAAG
*
14644297 TGGTTTTTCA-AAGGCTCAACCACAACC
1 TGGTTTTTCACAA-GCTCAACCAAAACC
14644324 TACAACAATA
Statistics
Matches: 77, Mismatches: 9, Indels: 16
0.75 0.09 0.16
Matches are distributed among these distances:
31 4 0.05
32 46 0.60
35 25 0.32
36 2 0.03
ACGTcount: A:0.34, C:0.26, G:0.14, T:0.25
Consensus pattern (32 bp):
TGGTTTTTCACAAGCTCAACCAAAACCCAAAG
Found at i:14644257 original size:67 final size:66
Alignment explanation
Indices: 14644167--14644361 Score: 250
Period size: 67 Copynumber: 2.9 Consensus size: 66
14644157 TTACAATGGC
* * *
14644167 TTTTCACAA-GCTCAGCCACAACCTTTAGCAATGGTTTTTCACAAGATCAACAAAAACCCAAAGT
1 TTTTCA-AAGGCTCAACCACAACCTTTA-CAATGGTTTTTCACGAGATCAACCAAAACCCAAAGT
14644231 GGT
64 GGT
* * *
14644234 TTTTCAAAGGCTCAACCATAACCTTTCACAATGGTTTTTCACGGGCTCAACCAAAACCCAAAGTG
1 TTTTCAAAGGCTCAACCACAACCTTT-ACAATGGTTTTTCACGAGATCAACCAAAACCCAAAGTG
14644299 GT
65 GT
** *
14644301 TTTTCAAAGGCTCAACCACAACCTACAACAATAGTTTTT-ACCGAGATCAACCAAAACCCAA
1 TTTTCAAAGGCTCAACCACAACCT-TTACAATGGTTTTTCA-CGAGATCAACCAAAACCCAA
14644362 TAACCAACTT
Statistics
Matches: 112, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
66 3 0.03
67 108 0.96
68 1 0.01
ACGTcount: A:0.36, C:0.27, G:0.12, T:0.25
Consensus pattern (66 bp):
TTTTCAAAGGCTCAACCACAACCTTTACAATGGTTTTTCACGAGATCAACCAAAACCCAAAGTGG
T
Found at i:14644338 original size:35 final size:34
Alignment explanation
Indices: 14644159--14644339 Score: 133
Period size: 35 Copynumber: 5.4 Consensus size: 34
14644149 CCAAGCTTTT
* * * *
14644159 ACAATGGCTTTTCACAA-GCTCAGCCACAACCTTTA
1 ACAATGGTTTTTCA-AAGGCTCAACCAAAACC-TCA
* * *
14644194 GCAATGGTTTTTCACAA-GATCAACAAAAACC-CA
1 ACAATGGTTTTTCA-AAGGCTCAACCAAAACCTCA
* *
14644227 A-AGTGGTTTTTCAAAGGCTCAACCATAACCTTTC-
1 ACAATGGTTTTTCAAAGGCTCAACCAAAACC--TCA
**
14644261 ACAATGGTTTTTCACGGGCTCAACCAAAACC-CA
1 ACAATGGTTTTTCAAAGGCTCAACCAAAACCTCA
* *
14644294 A-AGTGGTTTTTCAAAGGCTCAACCACAACCTACA
1 ACAATGGTTTTTCAAAGGCTCAACCAAAACCT-CA
*
14644328 ACAATAGTTTTT
1 ACAATGGTTTTT
14644340 ACCGAGATCA
Statistics
Matches: 115, Mismatches: 22, Indels: 18
0.74 0.14 0.12
Matches are distributed among these distances:
31 2 0.02
32 48 0.42
33 2 0.02
34 4 0.03
35 59 0.51
ACGTcount: A:0.34, C:0.26, G:0.13, T:0.27
Consensus pattern (34 bp):
ACAATGGTTTTTCAAAGGCTCAACCAAAACCTCA
Found at i:14652198 original size:2 final size:2
Alignment explanation
Indices: 14652177--14652263 Score: 65
Period size: 2 Copynumber: 45.5 Consensus size: 2
14652167 AATATCATTC
* * *
14652177 AT AT AA AT AC AT AT AT -T AT AT AA AT AT AT -T AT AT AT AT -T
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
** ** * *
14652216 AT AT NN NN AT AT AA AT AC AT AT -T AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14652257 AT AT AT A
1 AT AT AT A
14652264 ATAAGCCACA
Statistics
Matches: 67, Mismatches: 14, Indels: 8
0.75 0.16 0.09
Matches are distributed among these distances:
1 4 0.06
2 63 0.94
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.44
Consensus pattern (2 bp):
AT
Found at i:14652618 original size:16 final size:17
Alignment explanation
Indices: 14652578--14652622 Score: 56
Period size: 16 Copynumber: 2.6 Consensus size: 17
14652568 ATAATAATAT
*
14652578 TTAAAAATATATATTTTT
1 TTAAAAA-ATATATTTTA
*
14652596 TTTAAAAATA-ATTTTA
1 TTAAAAAATATATTTTA
14652612 TTAAAAAATAT
1 TTAAAAAATAT
14652623 TGAAAGGTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
16 14 0.61
17 3 0.13
18 6 0.26
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
TTAAAAAATATATTTTA
Found at i:14652698 original size:23 final size:23
Alignment explanation
Indices: 14652672--14652723 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
14652662 CCAAGGGTGG
14652672 GTTGCTGC-CTTGTGCCAGCA-CTT
1 GTTGCTGCACTTG-G-CAGCAGCTT
14652695 GTTGCTGCACTTGGCAGCAGCTT
1 GTTGCTGCACTTGGCAGCAGCTT
14652718 G-TGCTG
1 GTTGCTG
14652724 TTGAACAGCA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
22 10 0.37
23 13 0.48
24 4 0.15
ACGTcount: A:0.10, C:0.27, G:0.31, T:0.33
Consensus pattern (23 bp):
GTTGCTGCACTTGGCAGCAGCTT
Found at i:14652820 original size:16 final size:17
Alignment explanation
Indices: 14652799--14652833 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
14652789 CTTCTTTTTT
14652799 TTTTAATA-AAAAAATA
1 TTTTAATACAAAAAATA
14652815 TTTTAATAGCAAAAAATA
1 TTTTAATA-CAAAAAATA
14652833 T
1 T
14652834 ATATTTTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.47
18 9 0.53
ACGTcount: A:0.57, C:0.03, G:0.03, T:0.37
Consensus pattern (17 bp):
TTTTAATACAAAAAATA
Found at i:14653964 original size:17 final size:17
Alignment explanation
Indices: 14653934--14653966 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
14653924 TTCTTGATAA
14653934 AATAAAACTCCTTATTG
1 AATAAAACTCCTTATTG
14653951 AATAATAACT-CTTATT
1 AATAA-AACTCCTTATT
14653967 TCATTATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.39
Consensus pattern (17 bp):
AATAAAACTCCTTATTG
Found at i:14654174 original size:28 final size:28
Alignment explanation
Indices: 14654133--14654198 Score: 96
Period size: 28 Copynumber: 2.4 Consensus size: 28
14654123 AGACAAAAAA
* *
14654133 AAATATCTTATCTTGTCTAAATTGAGAC
1 AAATATGTTATCTTGTCTAAATTAAGAC
*
14654161 AAATATGTTTTCTTGTCTAAATTAAGAC
1 AAATATGTTATCTTGTCTAAATTAAGAC
*
14654189 AAAAATGTTA
1 AAATATGTTA
14654199 AAGCTGCCAT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.39, C:0.11, G:0.11, T:0.39
Consensus pattern (28 bp):
AAATATGTTATCTTGTCTAAATTAAGAC
Found at i:14660176 original size:2 final size:2
Alignment explanation
Indices: 14660169--14660214 Score: 69
Period size: 2 Copynumber: 24.0 Consensus size: 2
14660159 NNNNNNNNNN
*
14660169 AT AT AT AT AT AT AT AT AT AT AT AT AT -T A- AT AT AT AC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14660209 AT AT AT
1 AT AT AT
14660215 TCAATTTCCA
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
1 2 0.05
2 38 0.95
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:14660872 original size:14 final size:14
Alignment explanation
Indices: 14660823--14660872 Score: 57
Period size: 14 Copynumber: 3.4 Consensus size: 14
14660813 GGCGCCCTCA
*
14660823 ATTATTTTTTTGTC
1 ATTATTTTTTTATC
14660837 TATTACTTTTTTTATAC
1 -ATTA-TTTTTTTAT-C
14660854 A-TATTTTTTTATC
1 ATTATTTTTTTATC
14660867 ATTATT
1 ATTATT
14660873 CATACCAGTA
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
13 2 0.06
14 13 0.42
15 6 0.19
16 9 0.29
17 1 0.03
ACGTcount: A:0.22, C:0.08, G:0.02, T:0.68
Consensus pattern (14 bp):
ATTATTTTTTTATC
Found at i:14665070 original size:38 final size:38
Alignment explanation
Indices: 14665007--14665122 Score: 146
Period size: 38 Copynumber: 3.1 Consensus size: 38
14664997 GCTTCTATTG
*
14665007 GAAA-TTACCAATAGA-TTTCCAACGAAAAATTTCGTT
1 GAAATTTACCAATAGAGTTTCCAACGAAAATTTTCGTT
*
14665043 GAAATTTACCAATAGAGTTTCCAACGAAATTTTTCGTT
1 GAAATTTACCAATAGAGTTTCCAACGAAAATTTTCGTT
* ** * * *
14665081 AAAATTTACCAACGGAGTTTGCAAAGGAAATTTTCGTT
1 GAAATTTACCAATAGAGTTTCCAACGAAAATTTTCGTT
14665119 GAAA
1 GAAA
14665123 ATTTGCAACA
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
36 4 0.06
37 11 0.16
38 53 0.78
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.32
Consensus pattern (38 bp):
GAAATTTACCAATAGAGTTTCCAACGAAAATTTTCGTT
Found at i:14665127 original size:26 final size:27
Alignment explanation
Indices: 14665098--14665151 Score: 85
Period size: 26 Copynumber: 2.0 Consensus size: 27
14665088 ACCAACGGAG
14665098 TTTGCAA-AGGAAATTTTCGTT-GAAAA
1 TTTGCAACA-GAAATTTTCGTTAGAAAA
14665124 TTTGCAACAGAAATTTTCGTTAGAAAA
1 TTTGCAACAGAAATTTTCGTTAGAAAA
14665151 T
1 T
14665152 CTGTCTAGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
26 19 0.73
27 7 0.27
ACGTcount: A:0.39, C:0.09, G:0.17, T:0.35
Consensus pattern (27 bp):
TTTGCAACAGAAATTTTCGTTAGAAAA
Found at i:14667339 original size:110 final size:110
Alignment explanation
Indices: 14667163--14667377 Score: 322
Period size: 110 Copynumber: 2.0 Consensus size: 110
14667153 ATATTCATAC
* * * *
14667163 ATAAGCTAAAAGAAATTGAAACAAACTATCAAAATTATCATCAAAATATAAAAATTAAGATTAAT
1 ATAACCTAAAAGAAATTGAAACAAACTATCAAAATCATCATCAAAATATAAAAATCAAGACTAAT
* *
14667228 TCTCATTCATGTTAACAATAAAAAATGTTAACAAAAACATGACAT
66 TCCCATACATGTTAACAATAAAAAATGTTAACAAAAACATGACAT
* * * *
14667273 ATAACCTAAAATAAATTGAAACAAATTATCAAAATCATCATCAAAATGTAATAATCAAGACTAAT
1 ATAACCTAAAAGAAATTGAAACAAACTATCAAAATCATCATCAAAATATAAAAATCAAGACTAAT
* *
14667338 TCCCATACATGTTTACAATAAAAATTGTTAACAAAAACAT
66 TCCCATACATGTTAACAATAAAAAATGTTAACAAAAACAT
14667378 ACCATTCTAA
Statistics
Matches: 93, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
110 93 1.00
ACGTcount: A:0.53, C:0.13, G:0.06, T:0.27
Consensus pattern (110 bp):
ATAACCTAAAAGAAATTGAAACAAACTATCAAAATCATCATCAAAATATAAAAATCAAGACTAAT
TCCCATACATGTTAACAATAAAAAATGTTAACAAAAACATGACAT
Found at i:14722669 original size:6 final size:7
Alignment explanation
Indices: 14722641--14722666 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
14722631 GCTGACCCAT
14722641 TTTTTTC
1 TTTTTTC
14722648 TTTTTTC
1 TTTTTTC
14722655 TTTTTTC
1 TTTTTTC
14722662 TTTTT
1 TTTTT
14722667 CTTACATAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTTC
Found at i:14744826 original size:70 final size:71
Alignment explanation
Indices: 14744751--14744891 Score: 259
Period size: 70 Copynumber: 2.0 Consensus size: 71
14744741 TAAATTATTT
14744751 AATAGTTTTAAAATATTAAAATATAATTGTTTAAGAAATAACTCAATGCAAATAAAAC-TTTA-T
1 AATAGTTTTAAAATATTAAAATATAATTGTTTAAGAAATAACTCAATGCAAATAAAACTTTTATT
14744814 TATAAA
66 TATAAA
14744820 NAATAGTTTTAAAATATTAAAATATAATTGTTTAAGAAATAACTCAATGCAAATAAAACTTTTAT
1 -AATAGTTTTAAAATATTAAAATATAATTGTTTAAGAAATAACTCAATGCAAATAAAACTTTTAT
14744885 TTATAAA
65 TTATAAA
14744892 TTGAATAAAT
Statistics
Matches: 69, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
70 58 0.84
71 4 0.06
72 7 0.10
ACGTcount: A:0.51, C:0.06, G:0.06, T:0.37
Consensus pattern (71 bp):
AATAGTTTTAAAATATTAAAATATAATTGTTTAAGAAATAACTCAATGCAAATAAAACTTTTATT
TATAAA
Found at i:14752904 original size:19 final size:21
Alignment explanation
Indices: 14752880--14752918 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
14752870 TTGAGACCAT
14752880 GAAAG-AC-TTCATACAAAAG
1 GAAAGAACTTTCATACAAAAG
14752899 GAAAGAACTTTCATACAAAA
1 GAAAGAACTTTCATACAAAA
14752919 ATAAAGAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 5 0.28
20 2 0.11
21 11 0.61
ACGTcount: A:0.54, C:0.15, G:0.13, T:0.18
Consensus pattern (21 bp):
GAAAGAACTTTCATACAAAAG
Found at i:14758620 original size:17 final size:17
Alignment explanation
Indices: 14758598--14758631 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
14758588 TCACCAACAG
* *
14758598 CAAAAGGTAAGAGAAGT
1 CAAAAGCTAAGAAAAGT
14758615 CAAAAGCTAAGAAAAGT
1 CAAAAGCTAAGAAAAGT
14758632 GTGAAACCCC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.56, C:0.09, G:0.24, T:0.12
Consensus pattern (17 bp):
CAAAAGCTAAGAAAAGT
Found at i:14765720 original size:112 final size:111
Alignment explanation
Indices: 14765513--14765732 Score: 386
Period size: 112 Copynumber: 2.0 Consensus size: 111
14765503 CGATCATTTA
14765513 ACCATTTGATGATAAAATGGAAATTTTTAGCCAAGATTTGATCAAATTTGACCAAGAATAATTAT
1 ACCATTTGATGATAAAATGGAAATTTTTAGCCAAGATTTGATCAAATTTGACCAAGAATAATTAT
*
14765578 ATAAAATATAATTATGATTATTGGAATATAAAATGATGTTTAGNTTT
66 ATAAAATATAATTATGATTAATGGAATATAAAATGATGTTTAG-TTT
* *
14765625 ACCATTTGATGATAAAATGGAGATTTTTAGCCAAGATTTGATCACATTTGACCAAGAATAATTAT
1 ACCATTTGATGATAAAATGGAAATTTTTAGCCAAGATTTGATCAAATTTGACCAAGAATAATTAT
* *
14765690 ATGAAATATAATTATGATTAATGGAGTATAAAATGATGTTTAG
66 ATAAAATATAATTATGATTAATGGAATATAAAATGATGTTTAG
14765733 CAGTGAAAAA
Statistics
Matches: 103, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
112 103 1.00
ACGTcount: A:0.41, C:0.07, G:0.15, T:0.36
Consensus pattern (111 bp):
ACCATTTGATGATAAAATGGAAATTTTTAGCCAAGATTTGATCAAATTTGACCAAGAATAATTAT
ATAAAATATAATTATGATTAATGGAATATAAAATGATGTTTAGTTT
Found at i:14767419 original size:19 final size:19
Alignment explanation
Indices: 14767363--14767420 Score: 53
Period size: 19 Copynumber: 2.9 Consensus size: 19
14767353 GATTGTGCAA
**
14767363 GATGTGGGGGGATACACAC
1 GATGTGGGGGGATGTACAC
* **
14767382 GATGGTGCCGGCTATGTACAC
1 GAT-GTG-GGGGGATGTACAC
14767403 GATGTGGGGGGATGTACA
1 GATGTGGGGGGATGTACA
14767421 TGAGTCGGAT
Statistics
Matches: 29, Mismatches: 8, Indels: 4
0.71 0.20 0.10
Matches are distributed among these distances:
19 12 0.41
20 6 0.21
21 11 0.38
ACGTcount: A:0.22, C:0.16, G:0.41, T:0.21
Consensus pattern (19 bp):
GATGTGGGGGGATGTACAC
Found at i:14775544 original size:31 final size:31
Alignment explanation
Indices: 14775502--14775592 Score: 91
Period size: 31 Copynumber: 3.0 Consensus size: 31
14775492 GCATATACTC
14775502 TTGTCTAAATTAAGACAACTCTTATCTTAAT
1 TTGTCTAAATTAAGACAACTCTTATCTTAAT
* * *
14775533 TTGTCTTAATTAAAACAACAT-TTA---TATT
1 TTGTCTAAATTAAGACAAC-TCTTATCTTAAT
* * *
14775561 TTGTCTAAATTAAGATAATTCTTGTCTTAAT
1 TTGTCTAAATTAAGACAACTCTTATCTTAAT
14775592 T
1 T
14775593 AAGACAACAT
Statistics
Matches: 46, Mismatches: 9, Indels: 10
0.71 0.14 0.15
Matches are distributed among these distances:
27 1 0.02
28 20 0.43
31 24 0.52
32 1 0.02
ACGTcount: A:0.35, C:0.12, G:0.07, T:0.46
Consensus pattern (31 bp):
TTGTCTAAATTAAGACAACTCTTATCTTAAT
Found at i:14776718 original size:24 final size:24
Alignment explanation
Indices: 14776656--14776720 Score: 64
Period size: 24 Copynumber: 2.8 Consensus size: 24
14776646 GAGGATATAG
* *
14776656 AAAA-AAAGAGAAAAA-AAAAAGA
1 AAAAGAAAGATAAAAAGAGAAAGA
*
14776678 AAAAGAAAGGTAAAAAGAGAAAGA
1 AAAAGAAAGATAAAAAGAGAAAGA
*
14776702 AAAA-AACAGATAGAAAGAG
1 AAAAGAA-AGATAAAAAGAG
14776721 GCCAGTGTGC
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
22 4 0.11
23 11 0.31
24 20 0.57
ACGTcount: A:0.75, C:0.02, G:0.20, T:0.03
Consensus pattern (24 bp):
AAAAGAAAGATAAAAAGAGAAAGA
Found at i:14780741 original size:9 final size:9
Alignment explanation
Indices: 14780724--14780776 Score: 79
Period size: 9 Copynumber: 5.9 Consensus size: 9
14780714 ATATTTTTAT
*
14780724 TTAATCGTG
1 TTAAACGTG
14780733 TTAAACGTG
1 TTAAACGTG
*
14780742 TTAACCGTG
1 TTAAACGTG
14780751 TTAAACGTG
1 TTAAACGTG
*
14780760 TTAATCGTG
1 TTAAACGTG
14780769 TTAAACGT
1 TTAAACGT
14780777 ATTATTAATC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 39 1.00
ACGTcount: A:0.28, C:0.13, G:0.21, T:0.38
Consensus pattern (9 bp):
TTAAACGTG
Found at i:14780750 original size:18 final size:18
Alignment explanation
Indices: 14780724--14780776 Score: 97
Period size: 18 Copynumber: 2.9 Consensus size: 18
14780714 ATATTTTTAT
14780724 TTAATCGTGTTAAACGTG
1 TTAATCGTGTTAAACGTG
*
14780742 TTAACCGTGTTAAACGTG
1 TTAATCGTGTTAAACGTG
14780760 TTAATCGTGTTAAACGT
1 TTAATCGTGTTAAACGT
14780777 ATTATTAATC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 33 1.00
ACGTcount: A:0.28, C:0.13, G:0.21, T:0.38
Consensus pattern (18 bp):
TTAATCGTGTTAAACGTG
Found at i:14789933 original size:33 final size:34
Alignment explanation
Indices: 14789895--14789965 Score: 108
Period size: 33 Copynumber: 2.1 Consensus size: 34
14789885 TTTCAATTCT
*
14789895 TGTTTTGTTTGCTTTTGGTTTTCACTGTCTTC-A
1 TGTTTTGTTTGATTTTGGTTTTCACTGTCTTCAA
* *
14789928 TGTTTTGTTTGATTTTTGTTTTCATTGTCTTCAA
1 TGTTTTGTTTGATTTTGGTTTTCACTGTCTTCAA
14789962 TGTT
1 TGTT
14789966 GTACAGATAA
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
33 29 0.85
34 5 0.15
ACGTcount: A:0.08, C:0.11, G:0.17, T:0.63
Consensus pattern (34 bp):
TGTTTTGTTTGATTTTGGTTTTCACTGTCTTCAA
Found at i:14793694 original size:9 final size:9
Alignment explanation
Indices: 14793653--14793694 Score: 57
Period size: 9 Copynumber: 4.7 Consensus size: 9
14793643 ACACGATTAA
*
14793653 TAACACGAT
1 TAACACGTT
*
14793662 TAACATGTT
1 TAACACGTT
*
14793671 TAACATGTT
1 TAACACGTT
14793680 TAACACGTT
1 TAACACGTT
14793689 TAACAC
1 TAACAC
14793695 AATTAAATAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 30 1.00
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.33
Consensus pattern (9 bp):
TAACACGTT
Found at i:14793700 original size:18 final size:18
Alignment explanation
Indices: 14793653--14793700 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 18
14793643 ACACGATTAA
*
14793653 TAACACGATTAACATGTT
1 TAACACGATTAACACGTT
* *
14793671 TAACATGTTTAACACGTT
1 TAACACGATTAACACGTT
*
14793689 TAACACAATTAA
1 TAACACGATTAA
14793701 ATAAAAATAT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.42, C:0.17, G:0.08, T:0.33
Consensus pattern (18 bp):
TAACACGATTAACACGTT
Found at i:14794015 original size:17 final size:18
Alignment explanation
Indices: 14793979--14794017 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
14793969 ATTTAAAAGT
14793979 GATAACACAATTAAAACAC
1 GATAACACAATT-AAACAC
*
14793998 GATAACACGATT-AACAC
1 GATAACACAATTAAACAC
14794015 GAT
1 GAT
14794018 TTATTAAACG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 8 0.42
19 11 0.58
ACGTcount: A:0.51, C:0.21, G:0.10, T:0.18
Consensus pattern (18 bp):
GATAACACAATTAAACAC
Found at i:14795316 original size:31 final size:31
Alignment explanation
Indices: 14795272--14795403 Score: 97
Period size: 31 Copynumber: 4.3 Consensus size: 31
14795262 CTACGAGGTC
*
14795272 AAATT-AATAAAAATTATAAAATATAAAGATT
1 AAATTAAAT-AAAATTTTAAAATATAAAGATT
* * **
14795303 AAATTAAATAAAATTGTAAAGTAT-GGGAATT
1 AAATTAAATAAAATTTTAAAATATAAAG-ATT
* * * * **
14795334 GAATTGAATAAAATTTTATAATACAGGGATT
1 AAATTAAATAAAATTTTAAAATATAAAGATT
* ***
14795365 AAATTGAATAAAATTTTATCGTATAAAGATT
1 AAATTAAATAAAATTTTAAAATATAAAGATT
14795396 AAATTAAA
1 AAATTAAA
14795404 CACTTTTATT
Statistics
Matches: 81, Mismatches: 17, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
30 1 0.01
31 74 0.91
32 6 0.07
ACGTcount: A:0.54, C:0.02, G:0.11, T:0.34
Consensus pattern (31 bp):
AAATTAAATAAAATTTTAAAATATAAAGATT
Found at i:14795875 original size:46 final size:45
Alignment explanation
Indices: 14795825--14795921 Score: 149
Period size: 46 Copynumber: 2.1 Consensus size: 45
14795815 TCATTTTACG
* * *
14795825 TATGAAAATGATTGTCAATCGCCTATCAATTTCTCTAGGTTAGAA
1 TATGAAAATGATTGTCAATCACCTATCAATTTCTCTAGCTTACAA
*
14795870 TTATGAAAATGATTGTCAATCACCTATTAATTTCTCTAGCTTACAA
1 -TATGAAAATGATTGTCAATCACCTATCAATTTCTCTAGCTTACAA
14795916 TATGAA
1 TATGAA
14795922 TTAAAAAGGT
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
45 6 0.13
46 41 0.87
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.37
Consensus pattern (45 bp):
TATGAAAATGATTGTCAATCACCTATCAATTTCTCTAGCTTACAA
Found at i:14797311 original size:8 final size:8
Alignment explanation
Indices: 14797300--14797345 Score: 51
Period size: 8 Copynumber: 5.8 Consensus size: 8
14797290 GACAAATCGA
14797300 CTTGAAAG
1 CTTGAAAG
14797308 CTTGAAA-
1 CTTGAAAG
*
14797315 C-TGACAAAC
1 CTTG--AAAG
14797324 CTTGAAAG
1 CTTGAAAG
14797332 CTTGAAAG
1 CTTGAAAG
14797340 CTTGAA
1 CTTGAA
14797346 TTCAAGGGTG
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
6 2 0.06
7 1 0.03
8 27 0.82
9 1 0.03
10 2 0.06
ACGTcount: A:0.39, C:0.17, G:0.20, T:0.24
Consensus pattern (8 bp):
CTTGAAAG
Found at i:14800004 original size:21 final size:21
Alignment explanation
Indices: 14799979--14800023 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
14799969 CAATAGTTGC
* *
14799979 AGGCCTATTTGAAGTTACTGG
1 AGGCCCATTTGAAGCTACTGG
*
14800000 AGGCCCCTTTGAAGCTACTGG
1 AGGCCCATTTGAAGCTACTGG
14800021 AGG
1 AGG
14800024 TTGATATGAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.22, C:0.20, G:0.31, T:0.27
Consensus pattern (21 bp):
AGGCCCATTTGAAGCTACTGG
Found at i:14804047 original size:24 final size:24
Alignment explanation
Indices: 14804016--14804081 Score: 78
Period size: 24 Copynumber: 2.8 Consensus size: 24
14804006 GCTAGTAGAG
* * **
14804016 CAAATGAAGCTGCTGCTGGTGCAC
1 CAAATGAACCTGCTACTAATGCAC
*
14804040 CAAGTGAACCTGCTACTAATGCAC
1 CAAATGAACCTGCTACTAATGCAC
*
14804064 CAAATGAACCTACTACTA
1 CAAATGAACCTGCTACTA
14804082 GTGGAAGTCA
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.33, C:0.27, G:0.18, T:0.21
Consensus pattern (24 bp):
CAAATGAACCTGCTACTAATGCAC
Found at i:14805386 original size:2 final size:2
Alignment explanation
Indices: 14805381--14805410 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
14805371 ATATATATAT
14805381 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
14805411 GTGCTTTTCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:14806196 original size:3 final size:3
Alignment explanation
Indices: 14806188--14806223 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
14806178 ATTTACACAC
14806188 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
14806224 GTATTCACTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:14811165 original size:15 final size:15
Alignment explanation
Indices: 14811145--14811192 Score: 69
Period size: 15 Copynumber: 3.2 Consensus size: 15
14811135 AAAATAATTT
*
14811145 TTTAAAACCAAAAGC
1 TTTAAAATCAAAAGC
*
14811160 TTTAAAATCTAAAGC
1 TTTAAAATCAAAAGC
*
14811175 TTTAAAATCAAAATC
1 TTTAAAATCAAAAGC
14811190 TTT
1 TTT
14811193 GATCTTTAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.48, C:0.15, G:0.04, T:0.33
Consensus pattern (15 bp):
TTTAAAATCAAAAGC
Found at i:14824788 original size:21 final size:21
Alignment explanation
Indices: 14824764--14824805 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
14824754 TAACAGAATG
*
14824764 CTCTTAGTTGACTAAGTGCCT
1 CTCTTAGTCGACTAAGTGCCT
14824785 CTCTTAGTCGACTAAGTGCCT
1 CTCTTAGTCGACTAAGTGCCT
14824806 ATTGTCTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.19, C:0.26, G:0.19, T:0.36
Consensus pattern (21 bp):
CTCTTAGTCGACTAAGTGCCT
Found at i:14828764 original size:20 final size:20
Alignment explanation
Indices: 14828736--14828773 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
14828726 TACCTATGAT
*
14828736 CACTAGTTGATTTGAGTGAC
1 CACTAGTTGATCTGAGTGAC
*
14828756 CACTGGTTGATCTGAGTG
1 CACTAGTTGATCTGAGTG
14828774 GTACAAGATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.21, C:0.16, G:0.29, T:0.34
Consensus pattern (20 bp):
CACTAGTTGATCTGAGTGAC
Found at i:14830152 original size:22 final size:22
Alignment explanation
Indices: 14830120--14830161 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
14830110 TTTTTTTGAG
*
14830120 TTTATTCTCTGGTTTCTGCAAT
1 TTTATTCTCTGGTTCCTGCAAT
*
14830142 TTTATTTTCTGGTTCCTGCA
1 TTTATTCTCTGGTTCCTGCA
14830162 CCCATTCTAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.12, C:0.19, G:0.14, T:0.55
Consensus pattern (22 bp):
TTTATTCTCTGGTTCCTGCAAT
Found at i:14835596 original size:20 final size:20
Alignment explanation
Indices: 14835571--14835612 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
14835561 AAAGTACGTA
*
14835571 TGATCACTAGTTGATCTGAG
1 TGATCACTAGTTAATCTGAG
*
14835591 TGATCACTGGTTAATCTGAG
1 TGATCACTAGTTAATCTGAG
14835611 TG
1 TG
14835613 GTACAAGATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.24, C:0.14, G:0.26, T:0.36
Consensus pattern (20 bp):
TGATCACTAGTTAATCTGAG
Found at i:14843167 original size:37 final size:37
Alignment explanation
Indices: 14843121--14843214 Score: 179
Period size: 37 Copynumber: 2.5 Consensus size: 37
14843111 CTATGTCACT
*
14843121 TTATGTGACATAACCTTTGAGCTAAAATAGCTTTTTA
1 TTATGTGACATAACCTTTGAGCTAAAATAGCTTTTGA
14843158 TTATGTGACATAACCTTTGAGCTAAAATAGCTTTTGA
1 TTATGTGACATAACCTTTGAGCTAAAATAGCTTTTGA
14843195 TTATGTGACATAACCTTTGA
1 TTATGTGACATAACCTTTGA
14843215 TTTTGAAAAT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 56 1.00
ACGTcount: A:0.32, C:0.14, G:0.15, T:0.39
Consensus pattern (37 bp):
TTATGTGACATAACCTTTGAGCTAAAATAGCTTTTGA
Found at i:14850169 original size:2 final size:2
Alignment explanation
Indices: 14850162--14850201 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
14850152 GTGATAAATA
14850162 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14850202 TATTATCATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14859608 original size:36 final size:36
Alignment explanation
Indices: 14859568--14859637 Score: 131
Period size: 36 Copynumber: 1.9 Consensus size: 36
14859558 TTCAAGATGC
14859568 AGTCTTTTAACACCTTTATCTACTAATGTGCTACCT
1 AGTCTTTTAACACCTTTATCTACTAATGTGCTACCT
*
14859604 AGTCTTTTAACACCTTTATGTACTAATGTGCTAC
1 AGTCTTTTAACACCTTTATCTACTAATGTGCTAC
14859638 TCATCATTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.26, C:0.23, G:0.10, T:0.41
Consensus pattern (36 bp):
AGTCTTTTAACACCTTTATCTACTAATGTGCTACCT
Found at i:14864709 original size:85 final size:81
Alignment explanation
Indices: 14864549--14864709 Score: 223
Period size: 85 Copynumber: 1.9 Consensus size: 81
14864539 AAGGCCGAAC
*
14864549 CATCTAAGAAGCCCATAAAACACATATGGCAAGGCGCCTATGTGGCTATCAATAGACACCACCTG
1 CATCTAAGAAGCCCATAAAACACATATGGCAAGGCGCCTATGTGGCTATCAAAAGACACCACCTG
* *
14864614 TCCCTGAAAGGACAGT
66 TACCTAAAAGGACAGT
* * * *
14864630 CATCTAAGTAGCCCATGAAACCCACATATGGCGAGGTGCCTATGTGGCTGTATCAAAAGACACCA
1 CATCTAAGAAGCCCAT-AAA-ACACATATGGCAAGGCGCCTATGTGGC--TATCAAAAGACACCA
14864695 CCTGTACCTAAAAGG
62 CCTGTACCTAAAAGG
14864710 GAAGGCTAAA
Statistics
Matches: 69, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
81 15 0.22
82 3 0.04
83 24 0.35
85 27 0.39
ACGTcount: A:0.34, C:0.27, G:0.20, T:0.19
Consensus pattern (81 bp):
CATCTAAGAAGCCCATAAAACACATATGGCAAGGCGCCTATGTGGCTATCAAAAGACACCACCTG
TACCTAAAAGGACAGT
Found at i:14866707 original size:2 final size:2
Alignment explanation
Indices: 14866700--14866752 Score: 90
Period size: 2 Copynumber: 27.0 Consensus size: 2
14866690 GGTAGTTTAT
*
14866700 TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA TA TA TA TA TT
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
14866741 TA TA TA TA TA TA
1 TA TA TA TA TA TA
14866753 AAAGTTTTGG
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
1 1 0.02
2 47 0.98
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:14870744 original size:2 final size:2
Alignment explanation
Indices: 14870737--14870770 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
14870727 ATTATAATAA
* *
14870737 AT AT AT AT AT GT AT AT AA AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14870771 TTCCAGTAAC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Found at i:14871178 original size:213 final size:212
Alignment explanation
Indices: 14870781--14871197 Score: 647
Period size: 213 Copynumber: 2.0 Consensus size: 212
14870771 TTCCAGTAAC
* ** * *
14870781 TAATAAACAAGATAGCCCACACACTTAAAAGGTCAATTGCCAATAATTAATCAACTTAATATTTG
1 TAATAAACAAGATAGCCCACAAACTTAAAACATAAATTGACAATAATTAATCAACTTAATATTTG
* * * * *
14870846 CAGCCTCAATAACTAAACTTATACCAGAGCAAAGTATCATTTAGCGTATTTCCAGCACTATTAAA
66 CAACCTCAATAACTAAACTTATACCAGAGCAAAGCATCATTTAGCATATTTCCAGAACTAATAAA
*
14870911 CAGGACTGCCAACAAACTATAACAACTTCCTTATCTGCAAACTTCAGAAAGATCAAGAAGAGTAT
131 CAGGACTGCCAACAAACTATAACAACTTCATTATCTGCAAACTTCAGAAAGATCAAGAAGAGTAT
14870976 TATATATATGTATGAGG
196 TATATATATGTATGAGG
* *
14870993 TAATAAACAGGATAGCCCACAAACTTATAACATAAATTGACAATAATTAATCAACTTAATATTTG
1 TAATAAACAAGATAGCCCACAAACTTAAAACATAAATTGACAATAATTAATCAACTTAATATTTG
*
14871058 CATACTTCAATAACTAAACTTATACCAGAGCAAAGCATCATTTAGCATATTTCCAGTAACTAATA
66 CA-ACCTCAATAACTAAACTTATACCAGAGCAAAGCATCATTTAGCATATTTCCAG-AACTAATA
* * * *
14871123 AACTGGACTGCCAACAAACTATAACCACTTCATTATCTGCCAACTTTAG-AAGATCAAGAAGAGT
129 AACAGGACTGCCAACAAACTATAACAACTTCATTATCTGCAAACTTCAGAAAGATCAAGAAGAGT
14871187 ATTATATATAT
194 ATTATATATAT
14871198 ATATATATAT
Statistics
Matches: 185, Mismatches: 18, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
212 60 0.32
213 75 0.41
214 50 0.27
ACGTcount: A:0.42, C:0.19, G:0.11, T:0.28
Consensus pattern (212 bp):
TAATAAACAAGATAGCCCACAAACTTAAAACATAAATTGACAATAATTAATCAACTTAATATTTG
CAACCTCAATAACTAAACTTATACCAGAGCAAAGCATCATTTAGCATATTTCCAGAACTAATAAA
CAGGACTGCCAACAAACTATAACAACTTCATTATCTGCAAACTTCAGAAAGATCAAGAAGAGTAT
TATATATATGTATGAGG
Found at i:14871196 original size:2 final size:2
Alignment explanation
Indices: 14871189--14871229 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
14871179 AGAAGAGTAT
14871189 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
14871230 TACTCAAAGA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:14876055 original size:21 final size:21
Alignment explanation
Indices: 14876031--14876080 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
14876021 ACCTTTTCAT
*
14876031 AGCATATATAAACATTTCTAA
1 AGCATATATAAACATCTCTAA
*
14876052 AGCATATATAAACATCTCTAT
1 AGCATATATAAACATCTCTAA
*
14876073 AGCGTATA
1 AGCATATA
14876081 AATATATAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.44, C:0.16, G:0.08, T:0.32
Consensus pattern (21 bp):
AGCATATATAAACATCTCTAA
Found at i:14876214 original size:35 final size:35
Alignment explanation
Indices: 14876120--14876224 Score: 140
Period size: 35 Copynumber: 3.0 Consensus size: 35
14876110 CATCAGCTCT
**
14876120 TGTGCACTCCCTACACGCACAAGGT-AATATCATCA
1 TGTGCACTCCCTACACGCA-AATTTCAATATCATCA
* *
14876155 TGTGCACTCCCTACATGCACATTTCAATATCATCA
1 TGTGCACTCCCTACACGCAAATTTCAATATCATCA
* *
14876190 TGTGCACTCCCTACACGCATATTTCAATACCATCA
1 TGTGCACTCCCTACACGCAAATTTCAATATCATCA
14876225 CACGCACTCC
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
34 2 0.03
35 60 0.97
ACGTcount: A:0.30, C:0.32, G:0.10, T:0.28
Consensus pattern (35 bp):
TGTGCACTCCCTACACGCAAATTTCAATATCATCA
Found at i:14880145 original size:19 final size:20
Alignment explanation
Indices: 14880116--14880155 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
14880106 GATAAAGCAT
*
14880116 ATTATAAATAAGTAAAAATA
1 ATTATAAATAAATAAAAATA
14880136 ATTA-AAATAAATAAAAATA
1 ATTATAAATAAATAAAAATA
14880155 A
1 A
14880156 CAAATAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 15 0.79
20 4 0.21
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.28
Consensus pattern (20 bp):
ATTATAAATAAATAAAAATA
Found at i:14889454 original size:13 final size:13
Alignment explanation
Indices: 14889436--14889460 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14889426 TTCCAAAAAA
14889436 TTTATAAAATCAT
1 TTTATAAAATCAT
14889449 TTTATAAAATCA
1 TTTATAAAATCA
14889461 CAATTTTTTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTTATAAAATCAT
Found at i:14892731 original size:15 final size:15
Alignment explanation
Indices: 14892710--14892753 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
14892700 TTTAAAATAA
14892710 CTTTAAAACCAAAAG
1 CTTTAAAACCAAAAG
* *
14892725 TTTTAAAA-TATAAAG
1 CTTTAAAACCA-AAAG
14892740 CTTTAAAACCAAAA
1 CTTTAAAACCAAAA
14892754 TATCTAATCT
Statistics
Matches: 23, Mismatches: 4, Indels: 4
0.74 0.13 0.13
Matches are distributed among these distances:
14 1 0.04
15 21 0.91
16 1 0.04
ACGTcount: A:0.55, C:0.14, G:0.05, T:0.27
Consensus pattern (15 bp):
CTTTAAAACCAAAAG
Found at i:14894138 original size:13 final size:13
Alignment explanation
Indices: 14894120--14894144 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14894110 TTTTGGAAAA
14894120 TTTATAAAATCAT
1 TTTATAAAATCAT
14894133 TTTATAAAATCA
1 TTTATAAAATCA
14894145 CAATTTCTCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTTATAAAATCAT
Found at i:14898458 original size:20 final size:20
Alignment explanation
Indices: 14898414--14898460 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
14898404 ACTTATAAAC
* *
14898414 CTCAAATCATACTTCAATTA
1 CTCAAATCATACTCCAATAA
14898434 CTCAAATCATACTCCAATAA
1 CTCAAATCATACTCCAATAA
*
14898454 GTCAAAT
1 CTCAAAT
14898461 GGGGTCAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.43, C:0.26, G:0.02, T:0.30
Consensus pattern (20 bp):
CTCAAATCATACTCCAATAA
Found at i:14899930 original size:15 final size:15
Alignment explanation
Indices: 14899912--14899941 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
14899902 GTCACCATCA
14899912 TCCTCTGCATCATTG
1 TCCTCTGCATCATTG
*
14899927 TCCTCTGCCTCATTG
1 TCCTCTGCATCATTG
14899942 GCACCCTTAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.10, C:0.37, G:0.13, T:0.40
Consensus pattern (15 bp):
TCCTCTGCATCATTG
Found at i:14900281 original size:8 final size:8
Alignment explanation
Indices: 14900264--14900316 Score: 52
Period size: 8 Copynumber: 6.2 Consensus size: 8
14900254 AATATTTCTT
14900264 AAAAATAA
1 AAAAATAA
*
14900272 AAAATAAAA
1 AAAA-ATAA
14900281 AGAAAATAA
1 A-AAAATAA
*
14900290 TAAAATAA
1 AAAAATAA
14900298 TAAAAATAA
1 -AAAAATAA
*
14900307 ATAAATAA
1 AAAAATAA
14900315 AA
1 AA
14900317 GAAACTTGAA
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
8 19 0.53
9 14 0.39
10 3 0.08
ACGTcount: A:0.81, C:0.00, G:0.02, T:0.17
Consensus pattern (8 bp):
AAAAATAA
Found at i:14900302 original size:22 final size:21
Alignment explanation
Indices: 14900266--14900316 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 21
14900256 TATTTCTTAA
14900266 AAATAAAAAATAAAAAGAAAAT
1 AAATAAAAAATAAAAA-AAAAT
*
14900288 -AATAAAATAATAAAAATAAAT
1 AAATAAAA-AATAAAAAAAAAT
14900309 AAATAAAA
1 AAATAAAA
14900317 GAAACTTGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
21 11 0.42
22 15 0.58
ACGTcount: A:0.80, C:0.00, G:0.02, T:0.18
Consensus pattern (21 bp):
AAATAAAAAATAAAAAAAAAT
Found at i:14900313 original size:14 final size:13
Alignment explanation
Indices: 14900264--14900316 Score: 54
Period size: 14 Copynumber: 3.8 Consensus size: 13
14900254 AATATTTCTT
14900264 AAAAATAAAAAATA
1 AAAAAT-AAAAATA
14900278 AAAAGA-AAATAATA
1 AAAA-ATAAA-AATA
14900292 AAATAATAAAAATA
1 AAA-AATAAAAATA
14900306 AATAAATAAAA
1 AA-AAATAAAA
14900317 GAAACTTGAA
Statistics
Matches: 34, Mismatches: 0, Indels: 10
0.77 0.00 0.23
Matches are distributed among these distances:
13 3 0.09
14 25 0.74
15 6 0.18
ACGTcount: A:0.81, C:0.00, G:0.02, T:0.17
Consensus pattern (13 bp):
AAAAATAAAAATA
Found at i:14903890 original size:21 final size:21
Alignment explanation
Indices: 14903840--14903902 Score: 81
Period size: 21 Copynumber: 3.0 Consensus size: 21
14903830 TTAAATGGAG
* * *
14903840 GCATCAATCCTTGTCATAAAT
1 GCATCAGTCTTTGTCATGAAT
*
14903861 GCATCAGTCTTTGTTATGAAT
1 GCATCAGTCTTTGTCATGAAT
*
14903882 GCATTAGTCTTTGTCATGAAT
1 GCATCAGTCTTTGTCATGAAT
14903903 TGCGTGAACA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.27, C:0.17, G:0.16, T:0.40
Consensus pattern (21 bp):
GCATCAGTCTTTGTCATGAAT
Found at i:14914657 original size:20 final size:19
Alignment explanation
Indices: 14914634--14914687 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 19
14914624 TAAATATAAA
14914634 TAACATAAAACT-AACATTAT
1 TAACATAAAA-TAAACATT-T
*
14914654 TAACTTAAAATAAACATTT
1 TAACATAAAATAAACATTT
* *
14914673 AAACATAAATTAAAC
1 TAACATAAAATAAAC
14914688 TAAACTAATA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
19 14 0.48
20 15 0.52
ACGTcount: A:0.57, C:0.13, G:0.00, T:0.30
Consensus pattern (19 bp):
TAACATAAAATAAACATTT
Found at i:14916263 original size:21 final size:20
Alignment explanation
Indices: 14916239--14916277 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
14916229 TTCTTCTACT
*
14916239 CTTTGTAATTCTAAACTTTTG
1 CTTTCTAATTCT-AACTTTTG
14916260 CTTTCTAATTCTAACTTT
1 CTTTCTAATTCTAACTTT
14916278 AAAAGTTCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.23, C:0.18, G:0.05, T:0.54
Consensus pattern (20 bp):
CTTTCTAATTCTAACTTTTG
Found at i:14926450 original size:20 final size:20
Alignment explanation
Indices: 14926425--14926464 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
14926415 GATAAGTAAC
14926425 CAGATTTATCCATAGATAGT
1 CAGATTTATCCATAGATAGT
*
14926445 CAGATTTATCGATAGATAGT
1 CAGATTTATCCATAGATAGT
14926465 AACTAGAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.35, C:0.12, G:0.17, T:0.35
Consensus pattern (20 bp):
CAGATTTATCCATAGATAGT
Found at i:14942269 original size:24 final size:24
Alignment explanation
Indices: 14942201--14942294 Score: 93
Period size: 24 Copynumber: 3.9 Consensus size: 24
14942191 AAGAGCGATG
*
14942201 GAGAGAAAGAGGGGAAGAA-TGGCT
1 GAGAGAAAGAGGGGAA-AAGCGGCT
* * *
14942225 GAAAGAAAGAGAGGAAGAGCGGCT
1 GAGAGAAAGAGGGGAAAAGCGGCT
*
14942249 GAGAGAAAGAGGGGAAAAGC-GAT
1 GAGAGAAAGAGGGGAAAAGCGGCT
* *
14942272 CGAGAGAAAGAAGGGAAGAGCGG
1 -GAGAGAAAGAGGGGAAAAGCGG
14942295 GGAAGAGTGG
Statistics
Matches: 57, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
23 3 0.05
24 53 0.93
25 1 0.02
ACGTcount: A:0.45, C:0.06, G:0.45, T:0.04
Consensus pattern (24 bp):
GAGAGAAAGAGGGGAAAAGCGGCT
Found at i:14942280 original size:48 final size:48
Alignment explanation
Indices: 14942201--14942294 Score: 122
Period size: 48 Copynumber: 2.0 Consensus size: 48
14942191 AAGAGCGATG
*
14942201 GAGAGAAAGAGGGGAAGAATGGCTGAAAGAAAG-AGAGGAAGAGCGGCT
1 GAGAGAAAGAGGGGAAGAATGGATGAAAGAAAGAAG-GGAAGAGCGGCT
*
14942249 GAGAGAAAGAGGGGAA-AA-GCGATCGAGAGAAAGAAGGGAAGAGCGG
1 GAGAGAAAGAGGGGAAGAATG-GAT-GAAAGAAAGAAGGGAAGAGCGG
14942295 GGAAGAGTGG
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
46 1 0.02
47 4 0.10
48 34 0.83
49 2 0.05
ACGTcount: A:0.45, C:0.06, G:0.45, T:0.04
Consensus pattern (48 bp):
GAGAGAAAGAGGGGAAGAATGGATGAAAGAAAGAAGGGAAGAGCGGCT
Found at i:14942297 original size:34 final size:34
Alignment explanation
Indices: 14942259--14942328 Score: 86
Period size: 34 Copynumber: 2.1 Consensus size: 34
14942249 GAGAGAAAGA
14942259 GGGGAAAAGCGATCGAGAGAAAGAAGGGAAGAGC
1 GGGGAAAAGCGATCGAGAGAAAGAAGGGAAGAGC
* * * * * *
14942293 GGGGAAGAGTGGTTGAGAGAAAGAGGGGACGAGC
1 GGGGAAAAGCGATCGAGAGAAAGAAGGGAAGAGC
14942327 GG
1 GG
14942329 CAGAGAGAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.37, C:0.07, G:0.50, T:0.06
Consensus pattern (34 bp):
GGGGAAAAGCGATCGAGAGAAAGAAGGGAAGAGC
Found at i:14942301 original size:24 final size:23
Alignment explanation
Indices: 14942189--14942297 Score: 67
Period size: 24 Copynumber: 4.6 Consensus size: 23
14942179 CCCAAATAGT
* *
14942189 GGAAGAGCGATGGAGAGAAAGAGG
1 GGAAGAGCG-GGGAGAGAAAGAAG
** * *
14942213 GGAAGAATGGCTGAAAGAAAG-AG
1 GGAAGAGCGG-GGAGAGAAAGAAG
* *
14942236 AGGAAGAGCGGCTGAGAGAAAGAGG
1 -GGAAGAGCGG-GGAGAGAAAGAAG
* **
14942261 GGAAAAGCGATCGAGAGAAAGAAG
1 GGAAGAGCG-GGGAGAGAAAGAAG
14942285 GGAAGAGCGGGGA
1 GGAAGAGCGGGGA
14942298 AGAGTGGTTG
Statistics
Matches: 64, Mismatches: 17, Indels: 9
0.71 0.19 0.10
Matches are distributed among these distances:
23 3 0.05
24 60 0.94
25 1 0.02
ACGTcount: A:0.43, C:0.06, G:0.46, T:0.05
Consensus pattern (23 bp):
GGAAGAGCGGGGAGAGAAAGAAG
Found at i:14942316 original size:82 final size:82
Alignment explanation
Indices: 14942211--14942362 Score: 225
Period size: 82 Copynumber: 1.9 Consensus size: 82
14942201 GAGAGAAAGA
*
14942211 GGGGAAGAATGGCTGAAAGAAAGAGAGGAAGAGCGGCTGAGAGAAAGAGGGGAAAAGCGA-TCGA
1 GGGGAAGAATGGCTGAAAGAAAGAGAGGAAGAGCGGCAGAGAGAAAGAGGGGAAAAGCGACT-GA
14942275 GAGAAAGAAGGGAAGAGC
65 GAGAAAGAAGGGAAGAGC
* * * * * *
14942293 GGGGAAGAGTGGTTGAGAGAAAGAGGGGACGAGCGGCAGAGAGAAAGAGGGGAAGAGCGACTGAG
1 GGGGAAGAATGGCTGAAAGAAAGAGAGGAAGAGCGGCAGAGAGAAAGAGGGGAAAAGCGACTGAG
14942358 AGAAA
66 AGAAA
14942363 AGGGAAAGGA
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
82 61 0.98
83 1 0.02
ACGTcount: A:0.41, C:0.07, G:0.46, T:0.05
Consensus pattern (82 bp):
GGGGAAGAATGGCTGAAAGAAAGAGAGGAAGAGCGGCAGAGAGAAAGAGGGGAAAAGCGACTGAG
AGAAAGAAGGGAAGAGC
Found at i:14942320 original size:24 final size:24
Alignment explanation
Indices: 14942293--14942366 Score: 96
Period size: 24 Copynumber: 3.1 Consensus size: 24
14942283 AGGGAAGAGC
* *
14942293 GGGGAAGAGTGGTTGAGAGAAAGA
1 GGGGAAGAGCGGCTGAGAGAAAGA
* *
14942317 GGGGACGAGCGGCAGAGAGAAAGA
1 GGGGAAGAGCGGCTGAGAGAAAGA
*
14942341 GGGGAAGAGCGACTGAGAGAAA-A
1 GGGGAAGAGCGGCTGAGAGAAAGA
14942364 GGG
1 GGG
14942367 AAAGGAGGAT
Statistics
Matches: 43, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
23 4 0.09
24 39 0.91
ACGTcount: A:0.38, C:0.07, G:0.50, T:0.05
Consensus pattern (24 bp):
GGGGAAGAGCGGCTGAGAGAAAGA
Found at i:14942335 original size:58 final size:58
Alignment explanation
Indices: 14942237--14942351 Score: 160
Period size: 58 Copynumber: 2.0 Consensus size: 58
14942227 AAGAAAGAGA
*
14942237 GGAAGAGCGGCTGAGAGAAAGAGGGGAAAAGCGATCGAGAGAAAGAAGGGAAGAGCGG
1 GGAAGAGCGGCTGAGAGAAAGAGGGGAAAAGCGAGCGAGAGAAAGAAGGGAAGAGCGG
* * ** *
14942295 GGAAGAGTGGTTGAGAGAAAGAGGGGACGAGCG-GCAGAGAGAAAGAGGGGAAGAGCG
1 GGAAGAGCGGCTGAGAGAAAGAGGGGAAAAGCGAGC-GAGAGAAAGAAGGGAAGAGCG
14942352 ACTGAGAGAA
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
57 1 0.02
58 49 0.98
ACGTcount: A:0.39, C:0.08, G:0.49, T:0.04
Consensus pattern (58 bp):
GGAAGAGCGGCTGAGAGAAAGAGGGGAAAAGCGAGCGAGAGAAAGAAGGGAAGAGCGG
Found at i:14942379 original size:22 final size:24
Alignment explanation
Indices: 14942306--14942382 Score: 79
Period size: 24 Copynumber: 3.3 Consensus size: 24
14942296 GAAGAGTGGT
* * *
14942306 TGAGAGAAAGAGGGGACGAGCGGC
1 TGAGAGAAAGAGGGAAAGAGCGAC
* *
14942330 AGAGAGAAAGAGGGGAAGAGCGAC
1 TGAGAGAAAGAGGGAAAGAGCGAC
14942354 TGAGAGAAA-AGGGAAAGGAG-GA-
1 TGAGAGAAAGAGGGAAA-GAGCGAC
14942376 TGAGAGA
1 TGAGAGA
14942383 GAAAAAAAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
22 7 0.15
23 8 0.17
24 32 0.68
ACGTcount: A:0.43, C:0.06, G:0.47, T:0.04
Consensus pattern (24 bp):
TGAGAGAAAGAGGGAAAGAGCGAC
Found at i:14949922 original size:33 final size:33
Alignment explanation
Indices: 14949840--14949971 Score: 146
Period size: 33 Copynumber: 4.1 Consensus size: 33
14949830 TTTCCCTCTT
* * *
14949840 TCTCTCACCCGACTTCCCCTCTCTCTCAACAGC
1 TCTCTCACCCGACTTCCCCTCTCTTTCAGCCGC
* * *
14949873 TTTCCCACTCGACTTCCCCTCTCTTTCAGCCGC
1 TCTCTCACCCGACTTCCCCTCTCTTTCAGCCGC
* *
14949906 TCTCTCACCTGTCTTCCCC-CTC--TCAGCCGC
1 TCTCTCACCCGACTTCCCCTCTCTTTCAGCCGC
*
14949936 TCTCTCACCCGTCTTCCCCTCTCTCTT-AGCCGC
1 TCTCTCACCCGACTTCCCCTCTCT-TTCAGCCGC
14949969 TCT
1 TCT
14949972 TCCAGGGTTT
Statistics
Matches: 83, Mismatches: 12, Indels: 8
0.81 0.12 0.08
Matches are distributed among these distances:
30 26 0.31
31 3 0.04
32 3 0.04
33 50 0.60
34 1 0.01
ACGTcount: A:0.09, C:0.51, G:0.08, T:0.32
Consensus pattern (33 bp):
TCTCTCACCCGACTTCCCCTCTCTTTCAGCCGC
Found at i:14950073 original size:22 final size:22
Alignment explanation
Indices: 14950047--14950117 Score: 66
Period size: 22 Copynumber: 3.5 Consensus size: 22
14950037 CTGTGATTTA
14950047 GGTTTGCTGTGAAAATATTTTG
1 GGTTTGCTGTGAAAATATTTTG
*
14950069 GGTTTGTTGTG-----A-TTTG
1 GGTTTGCTGTGAAAATATTTTG
*
14950085 GG-TTGTTGTGAAAATATTTTG
1 GGTTTGCTGTGAAAATATTTTG
*
14950106 AGTTTGCTGTGA
1 GGTTTGCTGTGA
14950118 TTATGCTTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 14
0.70 0.05 0.25
Matches are distributed among these distances:
15 8 0.21
16 6 0.15
17 1 0.03
20 1 0.03
21 5 0.13
22 18 0.46
ACGTcount: A:0.18, C:0.03, G:0.31, T:0.48
Consensus pattern (22 bp):
GGTTTGCTGTGAAAATATTTTG
Found at i:14950092 original size:15 final size:16
Alignment explanation
Indices: 14950065--14950095 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
14950055 GTGAAAATAT
14950065 TTTGGGTTTGTTGTGA
1 TTTGGGTTTGTTGTGA
14950081 TTTGGG-TTGTTGTGA
1 TTTGGGTTTGTTGTGA
14950096 AAATATTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.06, C:0.00, G:0.39, T:0.55
Consensus pattern (16 bp):
TTTGGGTTTGTTGTGA
Found at i:14950098 original size:37 final size:38
Alignment explanation
Indices: 14950036--14950119 Score: 125
Period size: 37 Copynumber: 2.2 Consensus size: 38
14950026 TATTATGCTG
* *
14950036 GCTGTGATTTAGGTTTGCTGTGAAAATATTTTGGGTTT
1 GCTGTGATTTAGGGTTGCTGTGAAAATATTTTGAGTTT
* *
14950074 GTTGTGATTT-GGGTTGTTGTGAAAATATTTTGAGTTT
1 GCTGTGATTTAGGGTTGCTGTGAAAATATTTTGAGTTT
14950111 GCTGTGATT
1 GCTGTGATT
14950120 ATGCTTATTG
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
37 32 0.78
38 9 0.22
ACGTcount: A:0.18, C:0.04, G:0.30, T:0.49
Consensus pattern (38 bp):
GCTGTGATTTAGGGTTGCTGTGAAAATATTTTGAGTTT
Found at i:14952684 original size:85 final size:84
Alignment explanation
Indices: 14952554--14952760 Score: 229
Period size: 84 Copynumber: 2.5 Consensus size: 84
14952544 TTAAAAGGTA
* * *
14952554 ATATGAATTTGTATTTAATTTATCAAAAGACATAATTTACATTTTTTACAGAAAAAAATT-GAAA
1 ATATGATTTTATATTTAATATATCAAAAGACATAATTTACATTTTTT-CAG-AAAAAATTGGAAA
* *
14952618 GCCATCATTCTATTTTCAAAG
64 ACCATCATTCTAATTTCAAAG
* * ** *
14952639 ATATGATTTTATATTTCATATATCAAAAGGCATAACTTT-TTTTTTTTTAGAAAAAATTGGAAAA
1 ATATGATTTTATATTTAATATATCAAAAGACATAA-TTTACATTTTTTCAGAAAAAATTGGAAAA
* * *
14952703 CTATCTTTTTAATTTCAAAG
65 CCATCATTCTAATTTCAAAG
* * *
14952723 ATATGATTTTCTATTTAATATATCAAAAAACATGATTT
1 ATATGATTTTATATTTAATATATCAAAAGACATAATTT
14952761 TCTATTTCTA
Statistics
Matches: 102, Mismatches: 18, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
83 11 0.11
84 52 0.51
85 36 0.35
86 3 0.03
ACGTcount: A:0.41, C:0.09, G:0.08, T:0.43
Consensus pattern (84 bp):
ATATGATTTTATATTTAATATATCAAAAGACATAATTTACATTTTTTCAGAAAAAATTGGAAAAC
CATCATTCTAATTTCAAAG
Found at i:14953248 original size:16 final size:16
Alignment explanation
Indices: 14953227--14953257 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
14953217 AAAATAATAA
*
14953227 TTATTTTATTTTATTT
1 TTATTTTATTCTATTT
14953243 TTATTTTATTCTATT
1 TTATTTTATTCTATT
14953258 CTCACATAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.77
Consensus pattern (16 bp):
TTATTTTATTCTATTT
Found at i:14959324 original size:13 final size:13
Alignment explanation
Indices: 14959306--14959330 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14959296 ATTTTCAAAA
14959306 ATTTTATAAAATT
1 ATTTTATAAAATT
14959319 ATTTTATAAAAT
1 ATTTTATAAAAT
14959331 CTCATTTTCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
ATTTTATAAAATT
Found at i:14963928 original size:25 final size:25
Alignment explanation
Indices: 14963900--14963952 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
14963890 ATAATTTTAA
*
14963900 TTTATAAATTAAATCAT-AAAATAAT
1 TTTAT-AATAAAATCATAAAAATAAT
* *
14963925 TTTATTATAAAATTATAAAAATAAT
1 TTTATAATAAAATCATAAAAATAAT
14963950 TTT
1 TTT
14963953 TTTGTAAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 8 0.33
25 16 0.67
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (25 bp):
TTTATAATAAAATCATAAAAATAAT
Found at i:14963937 original size:24 final size:25
Alignment explanation
Indices: 14963910--14963968 Score: 70
Period size: 25 Copynumber: 2.5 Consensus size: 25
14963900 TTTATAAATT
14963910 AAATCAT-AAAATAATTTTATTATA
1 AAATCATAAAAATAATTTTATTATA
* * *
14963934 AAATTATAAAAATAATTTTTTTGTA
1 AAATCATAAAAATAATTTTATTATA
14963959 AAA--ATAAAAA
1 AAATCATAAAAA
14963969 AATGGGCTGA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
23 7 0.23
24 6 0.19
25 18 0.58
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.39
Consensus pattern (25 bp):
AAATCATAAAAATAATTTTATTATA
Found at i:14963960 original size:25 final size:25
Alignment explanation
Indices: 14963917--14963971 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
14963907 ATTAAATCAT
* *
14963917 AAAATAATTTTATTATAAAATTATA
1 AAAATAATTTTATTATAAAAATAAA
* *
14963942 AAAATAATTTTTTTGTAAAAATAAA
1 AAAATAATTTTATTATAAAAATAAA
14963967 AAAAT
1 AAAAT
14963972 GGGCTGACCC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (25 bp):
AAAATAATTTTATTATAAAAATAAA
Found at i:14984063 original size:57 final size:58
Alignment explanation
Indices: 14983993--14984103 Score: 143
Period size: 57 Copynumber: 1.9 Consensus size: 58
14983983 ACAGCAGGCC
* *
14983993 ATATGTGACATGGCTGTGACATGGTA-GATTTAGAATTTATGAAATGCCATGGTGAGA
1 ATATGTGACATGGCTGAGACACGGTAGGATTTAGAATTTATGAAATGCCATGGTGAGA
* * * * * *
14984050 ATATGTGATATGGCTGAGACACGGTAGGGTTTAGAGTTTGTGACATGCTATGGT
1 ATATGTGACATGGCTGAGACACGGTAGGATTTAGAATTTATGAAATGCCATGGT
14984104 AAGGTGAGAA
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
57 23 0.51
58 22 0.49
ACGTcount: A:0.28, C:0.09, G:0.31, T:0.32
Consensus pattern (58 bp):
ATATGTGACATGGCTGAGACACGGTAGGATTTAGAATTTATGAAATGCCATGGTGAGA
Found at i:14984132 original size:23 final size:23
Alignment explanation
Indices: 14984099--14984147 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
14984089 GTGACATGCT
*
14984099 ATGGTAAGGTGAGAATATGTGAC
1 ATGGTAAGGTGAGAATACGTGAC
*
14984122 ATGGTAGGGTGAGAATACGTGAC
1 ATGGTAAGGTGAGAATACGTGAC
14984145 ATG
1 ATG
14984148 ACATGAAAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.33, C:0.06, G:0.37, T:0.24
Consensus pattern (23 bp):
ATGGTAAGGTGAGAATACGTGAC
Found at i:14984183 original size:23 final size:23
Alignment explanation
Indices: 14984157--14984305 Score: 126
Period size: 23 Copynumber: 6.6 Consensus size: 23
14984147 GACATGAAAG
*
14984157 GAATATGTGAGACAACATGGTGA
1 GAATATGTGACACAACATGGTGA
*
14984180 GAATATGTGACAC-GC-TAGTGTGA
1 GAATATGTGACACAACAT-G-GTGA
* ** *
14984203 G-A-ATGTGACACACCATAATGT
1 GAATATGTGACACAACATGGTGA
*
14984224 GAATATGTGACACAACATGGTGT
1 GAATATGTGACACAACATGGTGA
***
14984247 GAATATGTGACATGCCATGGTGA
1 GAATATGTGACACAACATGGTGA
* * *
14984270 GAATATGTGAGATAGCATGGTGA
1 GAATATGTGACACAACATGGTGA
*
14984293 GCATATGTGACAC
1 GAATATGTGACAC
14984306 GGCTGTGACA
Statistics
Matches: 101, Mismatches: 19, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
21 13 0.13
22 5 0.05
23 83 0.82
ACGTcount: A:0.34, C:0.13, G:0.28, T:0.25
Consensus pattern (23 bp):
GAATATGTGACACAACATGGTGA
Found at i:14984243 original size:67 final size:68
Alignment explanation
Indices: 14984106--14984279 Score: 201
Period size: 67 Copynumber: 2.5 Consensus size: 68
14984096 GCTATGGTAA
* * * *
14984106 GGTGAGAATATGTGACATGGTAGGGTGAGAATACGTGACATGACATGAAAGGAATATGTGAGACA
1 GGTGAGAATATGTGACACGCTAGGGTGAGAATA-GTGACATCACATGAAAGGAATATGTGACACA
14984171 ACAT
65 ACAT
* *
14984175 GGTGAGAATATGTGACACGCTAGTGTGAGAAT-GTGACA-CACCAT-AATGTGAATATGTGACAC
1 GGTGAGAATATGTGACACGCTAGGGTGAGAATAGTGACATCA-CATGAAAG-GAATATGTGACAC
14984237 AACAT
64 AACAT
* * * *
14984242 GGTGTGAATATGTGACATGCCATGGTGAGAATATGTGA
1 GGTGAGAATATGTGACACGCTAGGGTGAGAATA-GTGA
14984280 GATAGCATGG
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
66 4 0.04
67 53 0.59
69 33 0.37
ACGTcount: A:0.35, C:0.11, G:0.30, T:0.24
Consensus pattern (68 bp):
GGTGAGAATATGTGACACGCTAGGGTGAGAATAGTGACATCACATGAAAGGAATATGTGACACAA
CAT
Found at i:14984257 original size:46 final size:46
Alignment explanation
Indices: 14984157--14984305 Score: 151
Period size: 46 Copynumber: 3.3 Consensus size: 46
14984147 GACATGAAAG
* * *
14984157 GAATATGTGAGACAACATGGTGAGAATATGTGACAC-GC-TAGTGT
1 GAATATGTGACACACCATGGTGAGAATATGTGACACAGCATGGTGT
** * *
14984201 GAGA-ATGTGACACACCATAATGTGAATATGTGACACAACATGGTGT
1 GA-ATATGTGACACACCATGGTGAGAATATGTGACACAGCATGGTGT
** * * *
14984247 GAATATGTGACATGCCATGGTGAGAATATGTGAGATAGCATGGTGA
1 GAATATGTGACACACCATGGTGAGAATATGTGACACAGCATGGTGT
*
14984293 GCATATGTGACAC
1 GAATATGTGACAC
14984306 GGCTGTGACA
Statistics
Matches: 83, Mismatches: 18, Indels: 6
0.78 0.17 0.06
Matches are distributed among these distances:
44 29 0.35
45 3 0.04
46 51 0.61
ACGTcount: A:0.34, C:0.13, G:0.28, T:0.25
Consensus pattern (46 bp):
GAATATGTGACACACCATGGTGAGAATATGTGACACAGCATGGTGT
Found at i:14984369 original size:23 final size:23
Alignment explanation
Indices: 14984356--14984597 Score: 96
Period size: 23 Copynumber: 10.0 Consensus size: 23
14984346 GGTGGGATTG
14984356 TGTGACACGACATGGTGAGAATC
1 TGTGACACGACATGGTGAGAATC
* **
14984379 TGTGACACGGCATATTGA-AATC
1 TGTGACACGACATGGTGAGAATC
* * *
14984401 GTGTGAGACGGCATGGTGAGAATT
1 -TGTGACACGACATGGTGAGAATC
*
14984425 TGTGACAGGCTGTGACATGGTAGAGTTTAAAGTT
1 TGTGACA--C---GACATGGT-GAG----AA-TC
* *
14984459 TGTGACACGCCATGGT-AGGAATA
1 TGTGACACGACATGGTGA-GAATC
*
14984482 TGTGACACGACATGGTGAGAATT
1 TGTGACACGACATGGTGAGAATC
* * *
14984505 TGTGACATGAAATGTTGA-AATC
1 TGTGACACGACATGGTGAGAATC
* * ** *
14984527 ATGTGAGACGGCATTATAAGAATC
1 -TGTGACACGACATGGTGAGAATC
* * * *
14984551 TATGACA-TAGCATGGTCAGAATG
1 TGTGACACGA-CATGGTGAGAATC
* * *
14984574 TGTGACATGGCGTGGTGAGAATC
1 TGTGACACGACATGGTGAGAATC
14984597 T
1 T
14984598 ACGACATGTC
Statistics
Matches: 162, Mismatches: 38, Indels: 38
0.68 0.16 0.16
Matches are distributed among these distances:
22 7 0.04
23 113 0.70
24 10 0.06
25 1 0.01
27 1 0.01
28 8 0.05
29 10 0.06
32 1 0.01
33 2 0.01
34 9 0.06
ACGTcount: A:0.30, C:0.13, G:0.30, T:0.27
Consensus pattern (23 bp):
TGTGACACGACATGGTGAGAATC
Found at i:14984557 original size:126 final size:127
Alignment explanation
Indices: 14984224--14984540 Score: 386
Period size: 126 Copynumber: 2.5 Consensus size: 127
14984214 ACCATAATGT
* * * * **
14984224 GAATATGTGACACAACATGGTGTGAATATGTGACATGCCATGGTGAGAAT-ATGTGAGATAGCAT
1 GAATATGTGACACGACATGGTGAGAATATGTGACATGACATGTTGA-AATCATGTGAGACGGCAT
* * * * * *
14984288 GGTGAGCATATGTGACACGGCTGTGACACGACAGGGTTTAGAGTTTGTGATATGCCATGGTGG
65 GGTGAGAATATGTGACACGGCTGTGACACGACAGAGTTTAAAGTTTGTGACACGCCATGGTAG
* * * * * * *
14984351 GATTGTGTGACACGACATGGTGAGAATCTGTGACACGGCATATTGAAATCGTGTGAGACGGCATG
1 GAATATGTGACACGACATGGTGAGAATATGTGACATGACATGTTGAAATCATGTGAGACGGCATG
* * **
14984416 GTGAGAATTTGTGACA-GGCTGTGACATGGTAGAGTTTAAAGTTTGTGACACGCCATGGTAG
66 GTGAGAATATGTGACACGGCTGTGACACGACAGAGTTTAAAGTTTGTGACACGCCATGGTAG
* *
14984477 GAATATGTGACACGACATGGTGAGAATTTGTGACATGAAATGTTGAAATCATGTGAGACGGCAT
1 GAATATGTGACACGACATGGTGAGAATATGTGACATGACATGTTGAAATCATGTGAGACGGCAT
14984541 TATAAGAATC
Statistics
Matches: 159, Mismatches: 30, Indels: 3
0.83 0.16 0.02
Matches are distributed among these distances:
126 96 0.60
127 63 0.40
ACGTcount: A:0.29, C:0.13, G:0.32, T:0.27
Consensus pattern (127 bp):
GAATATGTGACACGACATGGTGAGAATATGTGACATGACATGTTGAAATCATGTGAGACGGCATG
GTGAGAATATGTGACACGGCTGTGACACGACAGAGTTTAAAGTTTGTGACACGCCATGGTAG
Found at i:14984603 original size:23 final size:23
Alignment explanation
Indices: 14984545--14984611 Score: 71
Period size: 23 Copynumber: 2.9 Consensus size: 23
14984535 CGGCATTATA
* *
14984545 AGAATCTATGACATAGCATGGTC
1 AGAATCTATGACATGGCGTGGTC
* * *
14984568 AGAATGTGTGACATGGCGTGGTG
1 AGAATCTATGACATGGCGTGGTC
* *
14984591 AGAATCTACGACATGTCGTGG
1 AGAATCTATGACATGGCGTGG
14984612 CTTGCATATG
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.25
Consensus pattern (23 bp):
AGAATCTATGACATGGCGTGGTC
Done.