Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38630433
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 2298367 characters in sequence are not A, C, G, or T
File 47 of 97
Found at i:19059650 original size:65 final size:65
Alignment explanation
Indices: 19059520--19059652 Score: 164
Period size: 65 Copynumber: 2.0 Consensus size: 65
19059510 AAAGAGTTTG
* * *
19059520 AGAAATAGAATCAACTTAGTAGACCAAGTTAGTCGACTAATTACTCTCTGCCAGAATTTGCAACC
1 AGAAATAGAATCAACTTAGTAGACCAAGTCAGTCGACTAATGACTCTCTACCAGAATTTGCAACC
* * *
19059585 AGAAATAGAA-CTAACTTAGTCGACCAAGTCAGTCGACTAA-GAGCTCTCTATCTGCAATTTG-A
1 AGAAATAGAATC-AACTTAGTAGACCAAGTCAGTCGACTAATGA-CTCTCTACCAG-AATTTGCA
19059647 ACC
63 ACC
19059650 AGA
1 AGA
19059653 GCACTACAAG
Statistics
Matches: 59, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
64 2 0.03
65 51 0.86
66 6 0.10
ACGTcount: A:0.37, C:0.22, G:0.17, T:0.25
Consensus pattern (65 bp):
AGAAATAGAATCAACTTAGTAGACCAAGTCAGTCGACTAATGACTCTCTACCAGAATTTGCAACC
Found at i:19067613 original size:20 final size:20
Alignment explanation
Indices: 19067568--19067619 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
19067558 AAGGGGGAGT
19067568 AGAATGGGTGCAAGAACCAA
1 AGAATGGGTGCAAGAACCAA
* * *
19067588 AAAATGAGTGCAAGAACCAG
1 AGAATGGGTGCAAGAACCAA
19067608 AGAATGGGTGCA
1 AGAATGGGTGCA
19067620 TAATTAAAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.44, C:0.13, G:0.31, T:0.12
Consensus pattern (20 bp):
AGAATGGGTGCAAGAACCAA
Found at i:19069642 original size:151 final size:152
Alignment explanation
Indices: 19069428--19069720 Score: 364
Period size: 151 Copynumber: 1.9 Consensus size: 152
19069418 AGATTTATAA
* * *
19069428 CTTTATAAATTATTTTCAAATTGAATTTTTTTTTCAATTTTGGTTAAAAAGATCATAATTTGATG
1 CTTTATAAATGATTTTCAAATTGAA-TGTTTTTTCAATTTTGCTTAAAAAGATCATAATTTGATG
* ** * ** * *
19069493 TTTGTATAGGGAAACGTGAAGTGACAG-CATTCCATTGACAAGAAAAGTTCATTTACACG-CA-T
65 TTTGGATAGAAAAACATGAAGAAAAAGCCA-TCCATTGACAAGAAAAGTCCATTTA-A-GTCACT
19069555 TCATGCCTTTGAAAGCCTAATTGCTCT
127 T-ATGCCTTTGAAAGCCTAATTGCTCT
* *
19069582 CTTTATAAATGATTTT-AAATTG-A-GTTTTTTCATTTTTGCTTAAAACAGATCATATTTTGATG
1 CTTTATAAATGATTTTCAAATTGAATGTTTTTTCAATTTTGCTTAAAA-AGATCATAATTTGATG
*
19069644 TTTGGATCGAAAAACATGAAGAAAAAGCCATCCATTGACAAGAAAAGTCCATTTAAGTCACTTAT
65 TTTGGATAGAAAAACATGAAGAAAAAGCCATCCATTGACAAGAAAAGTCCATTTAAGTCACTTAT
19069709 GCCTTTGAAAGC
130 GCCTTTGAAAGC
19069721 TTTATTTCTT
Statistics
Matches: 121, Mismatches: 14, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
149 1 0.01
150 36 0.30
151 60 0.50
152 3 0.02
153 6 0.05
154 15 0.12
ACGTcount: A:0.34, C:0.14, G:0.15, T:0.38
Consensus pattern (152 bp):
CTTTATAAATGATTTTCAAATTGAATGTTTTTTCAATTTTGCTTAAAAAGATCATAATTTGATGT
TTGGATAGAAAAACATGAAGAAAAAGCCATCCATTGACAAGAAAAGTCCATTTAAGTCACTTATG
CCTTTGAAAGCCTAATTGCTCT
Found at i:19070026 original size:172 final size:170
Alignment explanation
Indices: 19069584--19070355 Score: 752
Period size: 172 Copynumber: 4.6 Consensus size: 170
19069574 ATTGCTCTCT
* * *
19069584 TTATAAATGATTTTAAATTG-A-GTTTTTTCATTTTTGCTTAAAACAGATCATATTTTGATGTTT
1 TTATAAATGATTTTAAATTGAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTTGATGTTT
* * ** * *
19069647 GGATCGAA-AAACATGAAGAAAAAGCCATCCATTGACAAGAAAAGTCCATTTA-AGTCACTTATG
66 GCAT-TAAGAAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATG
* * * **
19069710 CCTTTGAAAGCTTTATTTCTTGCTTTAAGTGGTTTTATAACC
130 CCTTCGAAAGCCTTATTACTCACTTTAAGTGGTTTTATAA-C
* ** * * *
19069752 TTATAAATGATTTTAGATT-AAAGTTTTTTCATTTCTGGTTAAAACAAATCATAATTAGATGTTT
1 TTATAAATGATTTTAAATTGAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTTGATGTTT
** * * * * *
19069816 GCATTGCGAAACGTGAAGCAAAACCCATCCATTGACAAGAAAAGTTTATTTGTAG-CTACTCATG
66 GCATTAAGAAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTC-ACTCATG
*
19069880 CCTTCGAAAGCCTTGTTACTCACTTTAAGTGGTTTTATAAC
130 CCTTCGAAAGCCTTATTACTCACTTTAAGTGGTTTTATAAC
* * *
19069921 ATTCTAAATTATTTTAAATTGAATTTTTTTTTTCATTTTTGGTTCAAA-AGATCATAATTTGATG
1 -TTATAAATGATTTTAAATTGAA--TTTTTTTTCATTTTTGGTTAAAACAGATCATAATTTGATG
* * ** *
19069985 TTTGCATCAAGAAACATGAAGTGAAAGTAATCCACTGACAAGAAAAGTCTATTTATAGTCACTCA
63 TTTGCATTAAGAAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCA
* ** *
19070050 TGCCTTC-AAATGCCTAACAACTCACTTTAAAT-GTATTTAT-AC
128 TGCCTTCGAAA-GCCTTATTACTCACTTTAAGTGGT-TTTATAAC
* *
19070092 TCCTATAAATGATTTTAAATTGAATTGTTTTTCATTTTTGGTTAAAACA-ATTCATAATTTGTTG
1 T--TATAAATGATTTTAAATTGAATTTTTTTTCATTTTTGGTTAAAACAGA-TCATAATTTGATG
* * * *
19070156 TTTGCATTTAG--A-A-GAAGCGAAAGCCATCCATTGA-AA-AAAAGTCTATTCATAGACACTCG
63 TTTGCATTAAGAAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCA
* * * * *
19070215 TGCCTTCTAAA-TCTTAGTTACTCATTTTAACTGGTTTTATAGTC
128 TGCCTTCGAAAGCCTTA-TTACTCACTTTAAGTGGTTTTATA-AC
* * ** * * *
19070259 TTATAAATTATTTCAAATCAAATTTTTTATCATTTTTGGTTAAAATAGATCATAATTGGATGTTT
1 TTATAAATGATTTTAAATTGAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTTGATGTTT
* * *
19070324 GCATTGAGAAACGTGAAGCGAAAGTCATCCAT
66 GCATTAAGAAACATGAAGCGAAAGCCATCCAT
19070356 GTAACACCCC
Statistics
Matches: 496, Mismatches: 82, Indels: 51
0.79 0.13 0.08
Matches are distributed among these distances:
164 3 0.01
165 103 0.21
166 8 0.02
167 20 0.04
168 20 0.04
169 98 0.20
170 81 0.16
171 31 0.06
172 112 0.23
173 20 0.04
ACGTcount: A:0.34, C:0.14, G:0.13, T:0.39
Consensus pattern (170 bp):
TTATAAATGATTTTAAATTGAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTTGATGTTT
GCATTAAGAAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATGC
CTTCGAAAGCCTTATTACTCACTTTAAGTGGTTTTATAAC
Found at i:19070266 original size:165 final size:164
Alignment explanation
Indices: 19069584--19070355 Score: 664
Period size: 165 Copynumber: 4.6 Consensus size: 164
19069574 ATTGCTCTCT
* * * *
19069584 TTATAAATGATTTTAAATT-GAGTTTTTTCATTTTTGCTTAAAACAGATCATATTTTGATGTTTG
1 TTATAAATGATTTTAAATTAAATTTTTTTCATTTTTGGTTAAAACA-ATCATAATTTGATGTTTG
* * * ** * *
19069648 GATCGAAAAACATGAAGAAAAAGCCATCCATTGACAAGAAAAGTCCATTTA-AGTCACTTATGCC
65 CATTG-AGAA-ATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAG-CACTCATGCC
* * * ** *
19069712 TTTGAAAGCTTTA-TTTCTTGCTTTAAGTGGTTTTATAACC
127 -TTCAAATC-TTAGTTACTCACTTTAAGTGGTTTTAT-ATC
* * * *
19069752 TTATAAATGATTTTAGATTAAAGTTTTTTCATTTCTGGTTAAAACAAATCATAATTAGATGTTTG
1 TTATAAATGATTTTAAATTAAATTTTTTTCATTTTTGGTTAAAAC-AATCATAATTTGATGTTTG
* * * * *
19069817 CATTGCGAAACGTGAAGCAAAACCCATCCATTGACAAGAAAAGTTTATTTGTAGCTACTCATGCC
65 CATTGAGAAA--TGAAGCGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGC-ACTCATGCC
* *
19069882 TTCGAAAGCCTT-GTTACTCACTTTAAGTGGTTTTATAAC
127 TTC-AAA-TCTTAGTTACTCACTTTAAGTGGTTTTATATC
* * * *
19069921 ATTCTAAATTATTTTAAATTGAATTTTTTTTTTCATTTTTGGTTCAAAA-GATCATAATTTGATG
1 -TTATAAATGATTTTAAATT-AA--ATTTTTTTCATTTTTGGTT-AAAACAATCATAATTTGATG
** * ** *
19069985 TTTGCATCAAGAAACATGAAGTGAAAGTAATCCACTGACAAGAAAAGTCTATTTATAGTCACTCA
61 TTTGCATTGAG-AA-ATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAG-CACTCA
* *** *
19070050 TGCCTTCAAATGCCTAACAACTCACTTTAAAT-GTATTTATACTC
123 TGCCTTCAAAT-CTTAGTTACTCACTTTAAGTGGT-TTTATA-TC
* * *
19070094 CTATAAATGATTTTAAATTGAATTGTTTTTCATTTTTGGTTAAAACAATTCATAATTTGTTGTTT
1 TTATAAATGATTTTAAATTAAATT-TTTTTCATTTTTGGTTAAAACAA-TCATAATTTGATGTTT
* * *
19070159 GCATTTAG-AA-GAAGCGAAAGCCATCCATTGA-AA-AAAAGTCTATTCATAGACACTCGTGCCT
64 GCATTGAGAAATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAG-CACTCATGCCT
* *
19070220 TCTAAATCTTAGTTACTCATTTTAACTGGTTTTATAGTC
128 TC-AAATCTTAGTTACTCACTTTAAGTGGTTTTATA-TC
* * * * *
19070259 TTATAAATTATTTCAAATCAAATTTTTTATCATTTTTGGTTAAAATAGATCATAATTGGATGTTT
1 TTATAAATGATTTTAAATTAAATTTTTT-TCATTTTTGGTTAAAACA-ATCATAATTTGATGTTT
*
19070324 GCATTGAGAAACGTGAAGCGAAAGTCATCCAT
64 GCATTGAGAAA--TGAAGCGAAAGCCATCCAT
19070356 GTAACACCCC
Statistics
Matches: 491, Mismatches: 81, Indels: 63
0.77 0.13 0.10
Matches are distributed among these distances:
164 4 0.01
165 106 0.22
166 11 0.02
167 18 0.04
168 21 0.04
169 104 0.21
170 69 0.14
171 32 0.07
172 101 0.21
173 20 0.04
174 5 0.01
ACGTcount: A:0.34, C:0.14, G:0.13, T:0.39
Consensus pattern (164 bp):
TTATAAATGATTTTAAATTAAATTTTTTTCATTTTTGGTTAAAACAATCATAATTTGATGTTTGC
ATTGAGAAATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGCACTCATGCCTTCA
AATCTTAGTTACTCACTTTAAGTGGTTTTATATC
Found at i:19070881 original size:16 final size:15
Alignment explanation
Indices: 19070860--19070909 Score: 75
Period size: 16 Copynumber: 3.3 Consensus size: 15
19070850 ATTTTAAGAA
19070860 AATAAAATAAATAACT
1 AATAAAATAAATAA-T
19070876 AATAAAATAAATAAT
1 AATAAAATAAATAAT
19070891 AATACAAAT-AATAAT
1 AATA-AAATAAATAAT
19070906 AATA
1 AATA
19070910 GTAAGTGAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
15 15 0.45
16 18 0.55
ACGTcount: A:0.70, C:0.04, G:0.00, T:0.26
Consensus pattern (15 bp):
AATAAAATAAATAAT
Found at i:19071209 original size:13 final size:12
Alignment explanation
Indices: 19071186--19071235 Score: 52
Period size: 11 Copynumber: 4.2 Consensus size: 12
19071176 AGTGTCGGCC
19071186 AAAGAAGAAGAAGA
1 AAAG-AGAA-AAGA
19071200 AAAGAGAAGAAG-
1 AAAGAGAA-AAGA
19071212 AAAGA-AAAAGA
1 AAAGAGAAAAGA
19071223 AAA-AGAAAAGA
1 AAAGAGAAAAGA
19071234 AA
1 AA
19071236 GAAGCCGGCT
Statistics
Matches: 34, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
10 4 0.12
11 13 0.38
12 5 0.15
13 8 0.24
14 4 0.12
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (12 bp):
AAAGAGAAAAGA
Found at i:19071209 original size:16 final size:16
Alignment explanation
Indices: 19071188--19071239 Score: 60
Period size: 16 Copynumber: 3.5 Consensus size: 16
19071178 TGTCGGCCAA
19071188 AGAAGAAGAAGAAAAG
1 AGAAGAAGAAGAAAAG
19071204 AGAAGAAGAAAGAAAA-
1 AGAAGAAG-AAGAAAAG
19071220 AG-A-AA-AAGAAAAG
1 AGAAGAAGAAGAAAAG
19071233 A-AAGAAG
1 AGAAGAAG
19071240 CCGGCTTTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 11
0.74 0.00 0.26
Matches are distributed among these distances:
12 7 0.23
13 2 0.06
14 4 0.13
15 1 0.03
16 10 0.32
17 7 0.23
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (16 bp):
AGAAGAAGAAGAAAAG
Found at i:19071510 original size:34 final size:33
Alignment explanation
Indices: 19071459--19071524 Score: 89
Period size: 34 Copynumber: 2.0 Consensus size: 33
19071449 AGAGGAGTAA
**
19071459 AAAGAAGAGAGTTTTGCTGTC-ATTTTAAGGGG
1 AAAGAAGAGAGTTTTGCTACCAATTTTAAGGGG
19071491 AAAGAAGAGCTAGTTTTGCTACCAATTTTAAGGG
1 AAAGAAGAG--AGTTTTGCTACCAATTTTAAGGG
19071525 AGAGAACGAG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
32 9 0.31
34 10 0.34
35 10 0.34
ACGTcount: A:0.33, C:0.09, G:0.27, T:0.30
Consensus pattern (33 bp):
AAAGAAGAGAGTTTTGCTACCAATTTTAAGGGG
Found at i:19074267 original size:171 final size:170
Alignment explanation
Indices: 19073748--19076219 Score: 1941
Period size: 171 Copynumber: 14.6 Consensus size: 170
19073738 AACTTTCAGA
* * * * *
19073748 GGTTTTATAA-CTTTATAAATTATTTTAACTTGAATTTGTTTTTCATTTTTGCTTAAAA-ATATC
1 GGTTTTATAATC-TTATAAATGATTTTAAATTAAATTT-TTTTTCATTTTTGGTTAAAACAAATC
* * * * * * *
19073811 ATAATTTAATGTTTGTATCGAGAAACATGAAACAAAAGTAATCTATTAACAAGAAGAGTCCATTT
64 ATAATTTGATGTTTGTATCGAGAAACGTGAAGCAAAAGCAATCCATTGACAAGAAAAGTCCATTT
* * ** **
19073876 ATAGTCATTCATGCCTTCGAAAGCCTAGTTTTTTGCTTTAAAT
129 ATAGTCACTCATGCCTT-TAAAGCCTAGTTACTCACTTTAAAT
* * * *
19073919 GGTTTTATAATCTTATAAATGATTTTAAATTGAAA-TTTTCTTCATTTTT-GTAAAAACAGAGCA
1 GGTTTTATAATCTTATAAATGATTTTAAATT-AAATTTTTTTTCATTTTTGGTTAAAACAAATCA
* * * * ** *
19073982 CAATTTGATGTTTGTAT-TAGGAAACGTGAAGCGAAA-CCATCTGTTGATAAGAAAAGTCCATTT
65 TAATTTGATGTTTGTATCGA-GAAACGTGAAGCAAAAGCAATCCATTGACAAGAAAAGTCCATTT
** *
19074045 ATAGTCACTCATGCCTTTAACAATCTAGTTGCTCGA-TTTAAAT
129 ATAGTCACTCATGCCTTTAA-AGCCTAGTTACTC-ACTTTAAAT
* * *
19074088 GATTTTATAATCTTATAAATGTTTTTAAATTAAATTTTTTTTCATTTTTAGTTAAAACAAATCAT
1 GGTTTTATAATCTTATAAATGATTTTAAATTAAATTTTTTTTCATTTTTGGTTAAAACAAATCAT
* * * * * * ** * *
19074153 AACTTGTTGTTTGCATTGAGAAACGTGAAGCCAAAGCCATATATTGACAAAAAAAGTCTATTTAT
66 AATTTGATGTTTGTATCGAGAAACGTGAAGCAAAAGCAATCCATTGACAAGAAAAGTCCATTTAT
* ** **
19074218 AGGCACTCATATCTTTAAAAACTGAGTTACTCACTTTAAAT
131 AGTCACTCATGCCTTTAAAGCCT-AGTTACTCACTTTAAAT
** * * * *
19074259 GGTTTTATAGCCTTATAAATGATTCTAAATCAAAATTTTTTTT-GTTTCTGGTTAAAACAGAA-C
1 GGTTTTATAATCTTATAAATGATTTTAAAT-TAAATTTTTTTTCATTTTTGGTTAAAACA-AATC
* * * * * * * *
19074322 ATAATTGGATGTTTGCATTGGGAAAAGTGAAGCAAAAGCCAT-CATTGACAAGAAAGGTCTATTT
64 ATAATTTGATGTTTGTATCGAGAAACGTGAAGCAAAAGCAATCCATTGACAAGAAAAGTCCATTT
* * * *
19074386 ATTGTCACCCATGCCTTTGAAACCCTGGTTACTCACTTTAAAT
129 ATAGTCACTCATGCCTTT-AAAGCCTAGTTACTCACTTTAAAT
* * * * * * * *
19074429 GGTTTTATAGTCTTATAAATGATTTCAAA-TAAAATTTTTTTCATCTCTGGTTAAACCATATCAA
1 GGTTTTATAATCTTATAAATGATTTTAAATTAAATTTTTTTTCATTTTTGGTTAAAACAAATCAT
* * ** *
19074493 AATTGGATGTTTGTGTCGAGAAACGCAAAGCAAAAGTC-ATCCATTAACAAGAAAAGTCCATTTA
66 AATTTGATGTTTGTATCGAGAAACGTGAAGCAAAAG-CAATCCATTGACAAGAAAAGTCCATTTA
* * * * * *
19074557 TAGTTACTCATGCCTTAGAAAACCTTA-TTGCTCTCTTTAAGT
130 TAGTCACTCATGCCTT-TAAAGCC-TAGTTACTCACTTTAAAT
* * * * *
19074599 GATTTTATAA-CTTTATAATTGATTTTAAATTGAATTGTTTTTCATTTTTTGTTAAAACAAATCA
1 GGTTTTATAATC-TTATAAATGATTTTAAATTAAATTTTTTTTCATTTTTGGTTAAAACAAATCA
* ** * * * ** * *
19074663 TAATTTGTTCATTGCATCAAGAAACATGAAGTGAGAGCTATCCATTGACAAGAAAAGTCCATTTA
65 TAATTTGATGTTTGTATCGAGAAACGTGAAGCAAAAGCAATCCATTGACAAGAAAAGTCCATTTA
* * * * *
19074728 TAGTCACTCATGCCTTTGAAATCCTTGTTAATCATTTTAAGT
130 TAGTCACTCATGCCTTT-AAAGCCTAGTTACTCACTTTAAAT
* * *
19074770 GGTTTTATAAGT-TTATAAATGATTTGT-CA-TAGAATTTTTTTTCATTTTTGGTT-AAATAGAT
1 GGTTTTATAA-TCTTATAAATGATTT-TAAATTA-AATTTTTTTTCATTTTTGGTTAAAACAAAT
* * * * *** *
19074831 AATAATTTGTTGTTTGTATCGACAAACATGAAATGAAAGCAATTCATTGACAAGAAAAGTCCATT
63 CATAATTTGATGTTTGTATCGAGAAACGTGAAGCAAAAGCAATCCATTGACAAGAAAAGTCCATT
* * ** **
19074896 TATAGTCATTCATGCCTTCAAAAGCCTAGTTGTTTGCTTTAAAT
128 TATAGTCACTCATGCCTT-TAAAGCCTAGTTACTCACTTTAAAT
** * * *
19074940 ACTTTTATATTCTTATAAATGATTTTAAATTGAATTTTTTTAT-ATTTTTTGTTAAAACAGAA-C
1 GGTTTTATAATCTTATAAATGATTTTAAATTAAATTTTTTT-TCATTTTTGGTTAAAACA-AATC
* * * * * * *
19075003 ATAATTAGATGTTTGAATCAAGAAACGTGAAGCAAAAATC-GTCCATTGACAACAAAAGTCAATT
64 ATAATTTGATGTTTGTATCGAGAAACGTGAAGC-AAAAGCAATCCATTGACAAGAAAAGTCCATT
* * * * **
19075067 TCA-AGTCATTCATGCCTTCGAAAGCCTTGTTACTCATTTTAAGC
128 T-ATAGTCACTCATGCCTT-TAAAGCCTAGTTACTCACTTTAAAT
* * * * * * ** *
19075111 GATTTTATAACCTTATAACTTATTTTAACTT--GTTTGTTTTTCATTTTTCATTAAAA-ATATCA
1 GGTTTTATAATCTTATAAATGATTTTAAATTAAATTT-TTTTTCATTTTTGGTTAAAACAAATCA
* * * * * ***
19075173 TAATTTGGTGTTTGTATAGGGAAATGAGAAATGAAAGCAATCCATTGACAAGAAAAGTCCATTTA
65 TAATTTGATGTTTGTATCGAGAAACGTGAAGCAAAAGCAATCCATTGACAAGAAAAGTCCATTTA
* ** * *
19075238 TAGACACTCATGCCATCGAAAGCCTAGTTGCTCGCTTTAAAT
130 TAGTCACTCATGCC-TTTAAAGCCTAGTTACTCACTTTAAAT
* * * *
19075280 AGTTTTATAATCTTATAAATGATTTTACATTGAATTTTTTTTTCATTTTTGGTTAAAA-AGATCA
1 GGTTTTATAATCTTATAAATGATTTTAAATT-AAATTTTTTTTCATTTTTGGTTAAAACAAATCA
* ** * *
19075344 TACTTTGATGTTTGTATAAAGAAACATGAAGCAAAAGAAATCCATTGACAAGAAAAGTCTC-TTT
65 TAATTTGATGTTTGTATCGAGAAACGTGAAGCAAAAGCAATCCATTGACAAGAAAAGTC-CATTT
* * ** * *
19075408 ATAGTCATTCAT-ACTTT------T-GAAACTCGCTTTAAGT
129 ATAGTCACTCATGCCTTTAAAGCCTAGTTACTCACTTTAAAT
** * *
19075442 GGTTTTATAA-CTTTATAAATGATTTTAAATTGTATTTTTCTTTCATTTTTGGTTTAAA-ATATC
1 GGTTTTATAATC-TTATAAATGATTTTAAATTAAATTTTT-TTTCATTTTTGGTTAAAACAAATC
* *
19075505 ATAATTTAATGTTTGTATC-AGAAAACGTGAAGCAAAAGCAATCCAATT-ACAAGAAAAGTTCAT
64 ATAATTTGATGTTTGTATCGAG-AAACGTGAAGCAAAAGCAATCC-ATTGACAAGAAAAGTCCAT
* * ** *
19075568 TTATAGACACTCATGCGATCGAAAGCCTAGTTGCTCACTTTAAAT
127 TTATAGTCACTCATGC-CTTTAAAGCCTAGTTACTCACTTTAAAT
* * ** * * * * *
19075613 GATTTTATAATCTTATAAATGGTTTTCCATTGAA-TTCTTTTCATATTTAGTTAAAA-AGATCAT
1 GGTTTTATAATCTTATAAATGATTTTAAATTAAATTTTTTTTCATTTTTGGTTAAAACAAATCAT
* ** * * * * *
19075676 ACTTTGATGTTTGTATAAAGAAACATGAAGCGAAAGTAATCCATTGATAAGAAAATTCCATTTAT
66 AATTTGATGTTTGTATCGAGAAACGTGAAGCAAAAGCAATCCATTGACAAGAAAAGTCCATTTAT
* * * * * * *
19075741 AGTCATTCATACCTTCGAAAGCCTTGTTACT-AGCATCAAGT
131 AGTCACTCATGCCTT-TAAAGCCTAGTTACTCA-CTTTAAAT
** * * *
19075782 GGTTTTATAA-CTTTATAAATGATTTTAAATTGTA-TTTTTTACATTTTTGGTTTAAA-ATATCA
1 GGTTTTATAATC-TTATAAATGATTTTAAATTAAATTTTTTTTCATTTTTGGTTAAAACAAATCA
* * * * *
19075844 TAATTTAATGTTTGTACCAAGAAACGTGAAGCAAAAGCAATCTAATGACAAGAAAAGTCCA-TTA
65 TAATTTGATGTTTGTATCGAGAAACGTGAAGCAAAAGCAATCCATTGACAAGAAAAGTCCATTTA
* * * *
19075908 TAATCACTAATGCCTTTGAAAGCCTAGTTCCTCACTTCAAAT
130 TAGTCACTCATGCCTTT-AAAGCCTAGTTACTCACTTTAAAT
* * * **
19075950 GGTTTTATAATCTTATGAATGATTTTAAATTGAA-TTTTTTTCATTTTTGGCTAAAACGGAT-AT
1 GGTTTTATAATCTTATAAATGATTTTAAATTAAATTTTTTTTCATTTTTGGTTAAAACAAATCAT
* * ** * * * *
19076013 AATTTGTTG-CTACATTGAGAAACATGCAGCGAAAA-CTATCCATTGACAAGAAAAGTCCATTTA
66 AATTTGATGTTTGTATCGAGAAACGTGAAGC-AAAAGCAATCCATTGACAAGAAAAGTCCATTTA
* **
19076076 TAGTCACTCATGCCTTCGAAAGCCTAGTTACTTGCTTTAAAT
130 TAGTCACTCATGCCTT-TAAAGCCTAGTTACTCACTTTAAAT
* * * *
19076118 GATTTTATAATCTTATAAATGATTTTAAATTGAAATGTTTTTT-ATTTCTAGTTAAAACAAATCA
1 GGTTTTATAATCTTATAAATGATTTTAAATT-AAATTTTTTTTCATTTTTGGTTAAAACAAATCA
* * * * *
19076182 TGATTAGATGTTTGCATCGGGAAATGTGAAGCAAAAGC
65 TAATTTGATGTTTGTATCGAGAAACGTGAAGCAAAAGC
19076220 CTCCATTTGT
Statistics
Matches: 1824, Mismatches: 396, Indels: 162
0.77 0.17 0.07
Matches are distributed among these distances:
161 9 0.00
162 120 0.07
163 4 0.00
164 1 0.00
167 34 0.02
168 189 0.10
169 471 0.26
170 413 0.23
171 555 0.30
172 28 0.02
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.39
Consensus pattern (170 bp):
GGTTTTATAATCTTATAAATGATTTTAAATTAAATTTTTTTTCATTTTTGGTTAAAACAAATCAT
AATTTGATGTTTGTATCGAGAAACGTGAAGCAAAAGCAATCCATTGACAAGAAAAGTCCATTTAT
AGTCACTCATGCCTTTAAAGCCTAGTTACTCACTTTAAAT
Found at i:19075296 original size:340 final size:336
Alignment explanation
Indices: 19073680--19076149 Score: 2069
Period size: 340 Copynumber: 7.3 Consensus size: 336
19073670 AGAGGTCGCT
** * * * * * * **
19073680 ACATCCATACACAAGAAATGTTCATTTATAGTCATTCATGCCTTCAAAAGTCTTATTAAAC-TTT
1 ACATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCATTT
* * * * * *
19073744 CAGAGGTTTTATAACTTTATAAATTATTTTAACTTGAATTTGTTTTTCATTTTTGCTTAAAAATA
66 AAGTGGTTTTATAACCTTATAAATGATTTTAAATTG--TTT-TTTTTCATTTTTGGTTAAAAATA
* * * * * *
19073809 TCATAATTTAATGTTTGTATCGAGAAAC-ATGAAACAAAAGTAATCTATTAACAAGAAGAGTCCA
128 TCATAATTTGATGTTTGTATAGAGAAACGA-GAAACAAAAGCAATCCATTGACAAGAAAAGTCCA
* * ** **
19073873 TTTATAGTCATTCATGCCTTCGAAAGCCTAGTTTTTTGCTTTAAATGGTTTTATAATCTTATAAA
192 TTTATAGACACTCATGCCTTCGAAAGCCTAGTTGCTCACTTTAAATGGTTTTATAATCTTATAAA
* * * * * *
19073938 TGATTTTAAATTGAAATTTTCTTCATTTTT-GTAAAAACAGAGCACAATTTGATGTTTGTATTAG
257 TGATTTTAAATTG-AATTTTTTTTATTTTTGGTTAAAACAGAACATAATTTGATGTTTGTATTAA
* *
19074002 GAAACGTGAAGCGAAA
321 GAAACATGAAGCAAAA
* ** * * ** * *
19074018 CCATCTGTTGATAAGAAAAGTCCATTTATAGTCACTCATGCCTT-TAACAATCTAGTTGCTCGAT
1 ACATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAA-AGCCTTGTTACTC-AT
* * * * * *
19074082 TTAAATGATTTTATAATCTTATAAATGTTTTTAAATTAAATTTTTTTTCATTTTTAGTTAAAACA
64 TTAAGTGGTTTTATAACCTTATAAATGATTTTAAATT--GTTTTTTTTCATTTTTGGTTAAAA-A
* * * * * * * * * ** * *
19074147 AATCATAACTTGTTGTTTGCATTGAGAAACGTGAAGCCAAAGCCATATATTGACAAAAAAAGTCT
126 TATCATAATTTGATGTTTGTATAGAGAAACGAGAAACAAAAGCAATCCATTGACAAGAAAAGTCC
* ** * ** * **
19074212 ATTTATAGGCACTCATATCTT-TAAAAACTGAGTTACTCACTTTAAATGGTTTTATAGCCTTATA
191 ATTTATAGACACTCATGCCTTCGAAAGCCT-AGTTGCTCACTTTAAATGGTTTTATAATCTTATA
* ** * * * *
19074276 AATGATTCTAAATCAAAATTTTTTTTGTTTCTGGTTAAAACAGAACATAATTGGATGTTTGCATT
255 AATGATTTTAAAT-TGAATTTTTTTTATTTTTGGTTAAAACAGAACATAATTTGATGTTTGTATT
**
19074341 GGGAAA-AGTGAAGCAAAA
319 AAGAAACA-TGAAGCAAAA
* * * * * * * *
19074359 GCCAT-CATTGACAAGAAAGGTCTATTTATTGTCACCCATGCCTTTGAAACCCTGGTTACTCACT
1 -ACATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCA-T
* ** * *** * * *
19074423 TTAAATGGTTTTATAGTCTTATAAATGATTTCAAATAAAATTTTTTTCATCTCTGGTTAAACCAT
64 TTAAGTGGTTTTATAACCTTATAAATGATTTTAAAT-TGTTTTTTTTCATTTTTGGTTAAA-AAT
* * * * * *
19074488 ATCAAAATTGGATGTTTGTGTCGAGAAACGCA-AAGCAAAAGTC-ATCCATTAACAAGAAAAGTC
127 ATCATAATTTGATGTTTGTATAGAGAAACG-AGAAACAAAAG-CAATCCATTGACAAGAAAAGTC
** * * * * *
19074551 CATTTATAGTTACTCATGCCTTAGAAAACCTTA-TTGCTCTCTTTAAGTGATTTTATAA-CTTTA
190 CATTTATAGACACTCATGCCTTCGAAAGCC-TAGTTGCTCACTTTAAATGGTTTTATAATC-TTA
* * * * ** *
19074614 TAATTGATTTTAAATTGAATTGTTTTTCATTTTTTGTTAAAACA-AATCATAATTTGTTCATTGC
253 TAAATGATTTTAAATTGAATT-TTTTTTATTTTTGGTTAAAACAGAA-CATAATTTGATGTTTGT
* ** *
19074678 ATCAAGAAACATGAAGTGAGA
316 ATTAAGAAACATGAAGCAAAA
* * * *
19074699 GCTATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAATCCTTGTTAATCATT
1 AC-ATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCA-T
** * * *
19074764 TTAAGTGGTTTTATAAGTTTATAAATGATTTGT-CATAGAATTTTTTTTCATTTTTGGTTAAATA
64 TTAAGTGGTTTTATAACCTTATAAATGATTT-TAAATTG--TTTTTTTTCATTTTTGGTTAAAAA
* * * * * ** *
19074828 GATAATAATTTGTTGTTTGTATCGACAAAC-ATGAAATGAAAGCAATTCATTGACAAGAAAAGTC
126 TATCATAATTTGATGTTTGTATAGAGAAACGA-GAAACAAAAGCAATCCATTGACAAGAAAAGTC
* * * * ** ** *
19074892 CATTTATAGTCATTCATGCCTTCAAAAGCCTAGTTGTTTGCTTTAAATACTTTTATATTCTTATA
190 CATTTATAGACACTCATGCCTTCGAAAGCCTAGTTGCTCACTTTAAATGGTTTTATAATCTTATA
* * * *
19074957 AATGATTTTAAATTGAATTTTTTTATATTTTTTGTTAAAACAGAACATAATTAGATGTTTGAATC
255 AATGATTTTAAATTGAATTTTTTT-TATTTTTGGTTAAAACAGAACATAATTTGATGTTTGTATT
*
19075022 AAGAAACGTGAAGCAAAA
319 AAGAAACATGAAGCAAAA
* * * *
19075040 ATCGTCCATTGACAACAAAAGTCAATTTCA-AGTCATTCATGCCTTCGAAAGCCTTGTTACTCAT
1 A-CATCCATTGACAAGAAAAGTCCATTT-ATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCA-
* * * * * **
19075104 TTTAAGCGATTTTATAACCTTATAACTTATTTTAACTTGTTTGTTTTTCATTTTTCATTAAAAAT
63 TTTAAGTGGTTTTATAACCTTATAAATGATTTTAAATTGTTT-TTTTTCATTTTTGGTTAAAAAT
* * * **
19075169 ATCATAATTTGGTGTTTGTATAGGGAAATGAGAAATGAAAGCAATCCATTGACAAGAAAAGTCCA
127 ATCATAATTTGATGTTTGTATAGAGAAACGAGAAACAAAAGCAATCCATTGACAAGAAAAGTCCA
* * *
19075234 TTTATAGACACTCATGCCATCGAAAGCCTAGTTGCTCGCTTTAAATAGTTTTATAATCTTATAAA
192 TTTATAGACACTCATGCCTTCGAAAGCCTAGTTGCTCACTTTAAATGGTTTTATAATCTTATAAA
* * * *
19075299 TGATTTTACATTGAATTTTTTTTTCATTTTTGGTTAAAA-AGATCATACTTTGATGTTTGTATAA
257 TGATTTTAAATTGAA-TTTTTTTT-ATTTTTGGTTAAAACAGAACATAATTTGATGTTTGTATTA
19075363 AGAAACATGAAGCAAAA
320 AGAAACATGAAGCAAAA
* * * * * *
19075380 GAAATCCATTGACAAGAAAAGTCTC-TTTATAGTCATTCATACTTTTGAAA--C----T-CGC-T
1 -ACATCCATTGACAAGAAAAGTC-CATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCAT
* *
19075436 TTAAGTGGTTTTATAACTTTATAAATGATTTTAAATTGTATTTTTCTTTCATTTTTGGTTTAAAA
64 TTAAGTGGTTTTATAACCTTATAAATGATTTTAAATTG--TTTTT-TTTCATTTTTGGTTAAAAA
* * *
19075501 TATCATAATTTAATGTTTGTATCAGA-AAACGTGAAGCAAAAGCAATCCAATT-ACAAGAAAAGT
126 TATCATAATTTGATGTTTGTAT-AGAGAAACGAGAAACAAAAGCAATCC-ATTGACAAGAAAAGT
* ** *
19075564 TCATTTATAGACACTCATGCGATCGAAAGCCTAGTTGCTCACTTTAAATGATTTTATAATCTTAT
189 CCATTTATAGACACTCATGCCTTCGAAAGCCTAGTTGCTCACTTTAAATGGTTTTATAATCTTAT
* ** * * * * * * *
19075629 AAATGGTTTTCCATTGAATTCTTTTCATATTTAGTTAAAA-AGATCATACTTTGATGTTTGTATA
254 AAATGATTTTAAATTGAATTTTTTTTATTTTTGGTTAAAACAGAACATAATTTGATGTTTGTATT
*
19075693 AAGAAACATGAAGCGAAAGT
319 AAGAAACATGAAGC-AAA-A
* * * *
19075713 A-ATCCATTGATAAGAAAATTCCATTTATAGTCATTCATACCTTCGAAAGCCTTGTTACTAGCA-
1 ACATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACT--CAT
* * * *
19075776 TCAAGTGGTTTTATAACTTTATAAATGATTTTAAATTGTATTTTTTACATTTTTGGTTTAAAATA
64 TTAAGTGGTTTTATAACCTTATAAATGATTTTAAATTGT-TTTTTTTCATTTTTGGTTAAAAATA
* * * * * *
19075841 TCATAATTTAATGTTTGTACCA-AGAAACGTGAAGCAAAAGCAATCTAATGACAAGAAAAGTCCA
128 TCATAATTTGATGTTTGTA-TAGAGAAACGAGAAACAAAAGCAATCCATTGACAAGAAAAGTCCA
* * * * *
19075905 -TTATA-ATCACTAATGCCTTTGAAAGCCTAGTTCCTCACTTCAAATGGTTTTATAATCTTATGA
192 TTTATAGA-CACTCATGCCTTCGAAAGCCTAGTTGCTCACTTTAAATGGTTTTATAATCTTATAA
* * * * * * ** *
19075968 ATGATTTTAAATTGAATTTTTTTCATTTTTGGCTAAAAC-GGATATAATTTGTTG-CTACATTGA
256 ATGATTTTAAATTGAATTTTTTTTATTTTTGGTTAAAACAGAACATAATTTGATGTTTGTATTAA
* *
19076031 GAAACATGCAGCGAAA
321 GAAACATGAAGCAAAA
*
19076047 ACTATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTAGTTACTTGC-
1 AC-ATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTAC-T-CA
* * *
19076111 TTTAAATGATTTTATAATCTTATAAATGATTTTAAATTG
63 TTTAAGTGGTTTTATAACCTTATAAATGATTTTAAATTG
19076150 AAATGTTTTT
Statistics
Matches: 1735, Mismatches: 323, Indels: 150
0.79 0.15 0.07
Matches are distributed among these distances:
330 1 0.00
331 124 0.07
332 12 0.01
333 146 0.08
334 7 0.00
335 2 0.00
336 103 0.06
337 101 0.06
338 119 0.07
339 40 0.02
340 585 0.34
341 464 0.27
342 31 0.02
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.39
Consensus pattern (336 bp):
ACATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTGTTACTCATTT
AAGTGGTTTTATAACCTTATAAATGATTTTAAATTGTTTTTTTTCATTTTTGGTTAAAAATATCA
TAATTTGATGTTTGTATAGAGAAACGAGAAACAAAAGCAATCCATTGACAAGAAAAGTCCATTTA
TAGACACTCATGCCTTCGAAAGCCTAGTTGCTCACTTTAAATGGTTTTATAATCTTATAAATGAT
TTTAAATTGAATTTTTTTTATTTTTGGTTAAAACAGAACATAATTTGATGTTTGTATTAAGAAAC
ATGAAGCAAAA
Found at i:19088881 original size:18 final size:18
Alignment explanation
Indices: 19088858--19088894 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
19088848 TAAATTTTTC
19088858 TTCTTTTCTTTCGCTTCT
1 TTCTTTTCTTTCGCTTCT
*
19088876 TTCTTTTCTTTCTCTTCT
1 TTCTTTTCTTTCGCTTCT
19088894 T
1 T
19088895 CTTCTTTCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.00, C:0.27, G:0.03, T:0.70
Consensus pattern (18 bp):
TTCTTTTCTTTCGCTTCT
Found at i:19088893 original size:14 final size:15
Alignment explanation
Indices: 19088855--19088902 Score: 53
Period size: 18 Copynumber: 3.0 Consensus size: 15
19088845 TGCTAAATTT
19088855 TTCTTCTTTTCTTTCGC
1 TTCTTCTTTTCTTT--C
19088872 TTCTTTCTTTTCTTTC
1 TTC-TTCTTTTCTTTC
19088888 -TCTTCTTCTTCTTTC
1 TTCTTCTT-TTCTTTC
19088903 ATTTCAAGTT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
14 5 0.17
15 9 0.31
16 1 0.03
17 3 0.10
18 11 0.38
ACGTcount: A:0.00, C:0.29, G:0.02, T:0.69
Consensus pattern (15 bp):
TTCTTCTTTTCTTTC
Found at i:19095695 original size:16 final size:15
Alignment explanation
Indices: 19095671--19095700 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
19095661 CATGGCTAAA
19095671 TTTTTTTAGATATTG
1 TTTTTTTAGATATTG
19095686 TTTTTATTAGATATT
1 TTTTT-TTAGATATT
19095701 ATGAGCTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.23, C:0.00, G:0.10, T:0.67
Consensus pattern (15 bp):
TTTTTTTAGATATTG
Found at i:19101297 original size:13 final size:13
Alignment explanation
Indices: 19101279--19101303 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
19101269 GGAGAAATTG
19101279 TGATTTTATAAAA
1 TGATTTTATAAAA
19101292 TGATTTTATAAA
1 TGATTTTATAAA
19101304 TTTTTTGAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TGATTTTATAAAA
Found at i:19107278 original size:73 final size:73
Alignment explanation
Indices: 19107087--19107287 Score: 257
Period size: 73 Copynumber: 2.8 Consensus size: 73
19107077 TTTTCTGATC
* * * *
19107087 CCAG-TTTCTAGCAGT-GAGCACTTAGTCTACTAACTTC-TTTCTTAGTCGATTAAGTTGTTTTT
1 CCAGATTTCTAGCAGTAGA-CTCTTAGTCGACTAAC-TCATTTCTTGGTCGATTAAGTTGGTTTT
*
19107149 GTCTTGAAGT
64 GTCTTAAAGT
* *
19107159 CCAAATTTCTAGCAGTAGACTCTTAGTCGACTAACTTACTTT-TTGGTCGATTAAGTTGGTTTTG
1 CCAGATTTCTAGCAGTAGACTCTTAGTCGACTAACTCA-TTTCTTGGTCGATTAAGTTGGTTTTG
19107223 TCTTAAAGT
65 TCTTAAAGT
* * *
19107232 CCAGATTTCTAGCAGTAGACTCTTAGTCGACTAACCCATTTCTTGGTTGACTAAGT
1 CCAGATTTCTAGCAGTAGACTCTTAGTCGACTAACTCATTTCTTGGTCGATTAAGT
19107288 CTTTTCTGTT
Statistics
Matches: 112, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
72 7 0.06
73 100 0.89
74 5 0.04
ACGTcount: A:0.23, C:0.19, G:0.18, T:0.40
Consensus pattern (73 bp):
CCAGATTTCTAGCAGTAGACTCTTAGTCGACTAACTCATTTCTTGGTCGATTAAGTTGGTTTTGT
CTTAAAGT
Found at i:19113586 original size:16 final size:16
Alignment explanation
Indices: 19113565--19113606 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
19113555 TATTTGGAGC
19113565 TTTTTTTAAAGCTTT-T
1 TTTTTTTAAA-CTTTAT
* *
19113581 TTTTTTTAGATTTTAT
1 TTTTTTTAAACTTTAT
19113597 TTTTTTTAAA
1 TTTTTTTAAA
19113607 AAAGGTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
15 3 0.14
16 19 0.86
ACGTcount: A:0.21, C:0.02, G:0.05, T:0.71
Consensus pattern (16 bp):
TTTTTTTAAACTTTAT
Found at i:19118429 original size:16 final size:16
Alignment explanation
Indices: 19118410--19118440 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
19118400 GATCATGATC
19118410 GAGAGAGAGGGAGAGG
1 GAGAGAGAGGGAGAGG
*
19118426 GAGAGGGAGGGAGAG
1 GAGAGAGAGGGAGAG
19118441 AGATATGGGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.00, G:0.65, T:0.00
Consensus pattern (16 bp):
GAGAGAGAGGGAGAGG
Found at i:19118493 original size:2 final size:2
Alignment explanation
Indices: 19118486--19118525 Score: 53
Period size: 2 Copynumber: 20.0 Consensus size: 2
19118476 TGTGTATATG
* * *
19118486 GA GA GA GA GG GA GA AA GG GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
19118526 TGGTGATGGG
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.47, C:0.00, G:0.53, T:0.00
Consensus pattern (2 bp):
GA
Found at i:19119822 original size:40 final size:39
Alignment explanation
Indices: 19119758--19119835 Score: 95
Period size: 40 Copynumber: 2.0 Consensus size: 39
19119748 TGACTATTTT
* * *
19119758 TTCACTTTAGTGGGGTTTTCAACCTTGTCAAGATTGGTGA
1 TTCACCTTAGTGGGATTTTCAACCTCGTCAAGA-TGGTGA
*
19119798 TTCACCTTAGTGGGA-TTTCTAACCTCGTCACGATGGTG
1 TTCACCTTAGTGGGATTTTC-AACCTCGTCAAGATGGTG
19119836 TCTTTCACAA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
39 9 0.27
40 24 0.73
ACGTcount: A:0.19, C:0.19, G:0.24, T:0.37
Consensus pattern (39 bp):
TTCACCTTAGTGGGATTTTCAACCTCGTCAAGATGGTGA
Found at i:19132362 original size:19 final size:21
Alignment explanation
Indices: 19132330--19132369 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 21
19132320 ATGTTTTTTT
*
19132330 TTCCTTCTCTCTTTTTCCTTG
1 TTCCTTCTCTCTTTCTCCTTG
19132351 TTCC-TCTC-CTTTCTCCTTG
1 TTCCTTCTCTCTTTCTCCTTG
19132370 GCTAGTAGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 10 0.56
20 4 0.22
21 4 0.22
ACGTcount: A:0.00, C:0.38, G:0.05, T:0.57
Consensus pattern (21 bp):
TTCCTTCTCTCTTTCTCCTTG
Found at i:19132814 original size:146 final size:146
Alignment explanation
Indices: 19132546--19132838 Score: 453
Period size: 146 Copynumber: 2.0 Consensus size: 146
19132536 TGCAGACTGG
19132546 TCTAGGCTGTCTTTTGATGGTTATTAATGCCAAGTTCACTAATACAACTGTTCTACTTGTAATAA
1 TCTAGGCTGTCTTTTGATGGTTATTAATGCCAAGTTCACTAATACAACTGTTCTACTTGTAATAA
*
19132611 AAAATATCTTCAAGCACTTGACTCTTGGCCTTGCCTAACCTTTATACTTAAAACTTTCATCTTAA
66 AAAATATCTTCAAGCACTTGAATCTTGGCCTTGCCTAACCTTTATACTTAAAACTTTCATCTTAA
*
19132676 TCTGCCAAAGCTTTCA
131 TCTACCAAAGCTTTCA
* * * * * *
19132692 TCTAGGCTGTCTTTTGATGGTTATTACTTCTAGGTTCACTAATACACCTGTTCTATTTGTAATAA
1 TCTAGGCTGTCTTTTGATGGTTATTAATGCCAAGTTCACTAATACAACTGTTCTACTTGTAATAA
* ** *
19132757 AAAATGTCTTCAAGCACTTGAAT-TGTGGCCTTGCCTAACCTTTATACTTGGACCTTTCATCTTA
66 AAAATATCTTCAAGCACTTGAATCT-TGGCCTTGCCTAACCTTTATACTTAAAACTTTCATCTTA
*
19132821 ATCTACCACAGCTTTCA
130 ATCTACCAAAGCTTTCA
19132838 T
1 T
19132839 TAAATTTTAG
Statistics
Matches: 133, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
145 1 0.01
146 132 0.99
ACGTcount: A:0.27, C:0.22, G:0.13, T:0.39
Consensus pattern (146 bp):
TCTAGGCTGTCTTTTGATGGTTATTAATGCCAAGTTCACTAATACAACTGTTCTACTTGTAATAA
AAAATATCTTCAAGCACTTGAATCTTGGCCTTGCCTAACCTTTATACTTAAAACTTTCATCTTAA
TCTACCAAAGCTTTCA
Found at i:19134927 original size:48 final size:48
Alignment explanation
Indices: 19134851--19134990 Score: 192
Period size: 48 Copynumber: 2.9 Consensus size: 48
19134841 CCAGCTGAAG
* * * *
19134851 CACCAATAGGTGCACCACCTCCCA-GTGCATCTGCTGCAGCAGCAGGCA
1 CACCAATAGGAGCACCACCT-CCAGGTGCACCAGCTGCAGCACCAGGCA
* *
19134899 CACCAATAGGAGCACCACCTCCAGGTGCACCAGCAGCAACACCAGGCA
1 CACCAATAGGAGCACCACCTCCAGGTGCACCAGCTGCAGCACCAGGCA
* *
19134947 CACCAATAGGAGCACCACCTTCTGGTGCACCAGCTGCAGCACCA
1 CACCAATAGGAGCACCACCTCCAGGTGCACCAGCTGCAGCACCA
19134991 ATAGGTGCAC
Statistics
Matches: 81, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
47 3 0.04
48 78 0.96
ACGTcount: A:0.29, C:0.39, G:0.21, T:0.11
Consensus pattern (48 bp):
CACCAATAGGAGCACCACCTCCAGGTGCACCAGCTGCAGCACCAGGCA
Found at i:19140395 original size:19 final size:20
Alignment explanation
Indices: 19140353--19140419 Score: 68
Period size: 20 Copynumber: 3.4 Consensus size: 20
19140343 TTTTTAAAAT
*
19140353 ATTAATAATTTATTAGTTNT-
1 ATTAATAATTTA-TAGTTATA
19140373 ATTAATAATTTATAGTT-TA
1 ATTAATAATTTATAGTTATA
*
19140392 ATTAA-AATGTTAATATTTATA
1 ATTAATAAT-TT-ATAGTTATA
19140413 ATTAATA
1 ATTAATA
19140420 CATTAATATG
Statistics
Matches: 41, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
18 4 0.10
19 12 0.29
20 17 0.41
21 7 0.17
22 1 0.02
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.51
Consensus pattern (20 bp):
ATTAATAATTTATAGTTATA
Found at i:19145033 original size:29 final size:29
Alignment explanation
Indices: 19144996--19145151 Score: 178
Period size: 29 Copynumber: 5.4 Consensus size: 29
19144986 TTTTGTCTTT
19144996 AATTAAGACAAAAATATTTTTCTTGTCTA
1 AATTAAGACAAAAATATTTTTCTTGTCTA
* *
19145025 AATTGAGAC--AAATATGTTTTCTTGTTTA
1 AATTAAGACAAAAATAT-TTTTCTTGTCTA
*
19145053 GATTAAGACAAAAATATTTTTCTTGTCTTA
1 AATTAAGACAAAAATATTTTTCTTGTC-TA
*
19145083 AATTAAGACAAACATA-TTTTCTTGTCTA
1 AATTAAGACAAAAATATTTTTCTTGTCTA
* * *
19145111 AATTAAAACTAAACATGA--TTTCTTATCTA
1 AATTAAGAC-AAAAAT-ATTTTTCTTGTCTA
19145140 AATTAAGACAAA
1 AATTAAGACAAA
19145152 CATGTTAAAG
Statistics
Matches: 111, Mismatches: 10, Indels: 13
0.83 0.07 0.10
Matches are distributed among these distances:
27 6 0.05
28 31 0.28
29 51 0.46
30 23 0.21
ACGTcount: A:0.41, C:0.11, G:0.08, T:0.40
Consensus pattern (29 bp):
AATTAAGACAAAAATATTTTTCTTGTCTA
Found at i:19145116 original size:58 final size:57
Alignment explanation
Indices: 19144996--19145154 Score: 205
Period size: 57 Copynumber: 2.8 Consensus size: 57
19144986 TTTTGTCTTT
* * * *
19144996 AATTAAGACAAAAATATTTTTCTTGTCTAAATTGAGACAAATATGTTTTCTTGTTTA
1 AATTAAGACAAAAATATTTTTCTTGTCTAAATTAAGACAAACATATTTTCTTGTCTA
*
19145053 GATTAAGACAAAAATATTTTTCTTGTCTTAAATTAAGACAAACATATTTTCTTGTCTA
1 AATTAAGACAAAAATATTTTTCTTGTC-TAAATTAAGACAAACATATTTTCTTGTCTA
* * *
19145111 AATTAAAACTAAACATGA--TTTCTTATCTAAATTAAGACAAACAT
1 AATTAAGAC-AAAAAT-ATTTTTCTTGTCTAAATTAAGACAAACAT
19145155 GTTAAAGTTG
Statistics
Matches: 90, Mismatches: 9, Indels: 6
0.86 0.09 0.06
Matches are distributed among these distances:
57 43 0.48
58 41 0.46
59 5 0.06
60 1 0.01
ACGTcount: A:0.41, C:0.11, G:0.08, T:0.40
Consensus pattern (57 bp):
AATTAAGACAAAAATATTTTTCTTGTCTAAATTAAGACAAACATATTTTCTTGTCTA
Found at i:19145134 original size:87 final size:87
Alignment explanation
Indices: 19144988--19145151 Score: 231
Period size: 87 Copynumber: 1.9 Consensus size: 87
19144978 TAAGACACTT
* * * * * * *
19144988 TTGTCTTTAATTAAGACAAAAATATTTTTCTTGTCTAAATTGAGACAAATATGTTTTCTTGTTTA
1 TTGTCTTAAATTAAGACAAAAATATTTTTCTTGTCTAAATTAAAACAAACATGATTTCTTATCTA
*
19145053 GATTAAGACAAAAATATTTTTC
66 AATTAAGACAAAAATATTTTTC
*
19145075 TTGTCTTAAATTAAGACAAACATA-TTTTCTTGTCTAAATTAAAACTAAACATGATTTCTTATCT
1 TTGTCTTAAATTAAGACAAAAATATTTTTCTTGTCTAAATTAAAAC-AAACATGATTTCTTATCT
19145139 AAATTAAGACAAA
65 AAATTAAGACAAA
19145152 CATGTTAAAG
Statistics
Matches: 67, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
86 19 0.28
87 48 0.72
ACGTcount: A:0.39, C:0.11, G:0.09, T:0.41
Consensus pattern (87 bp):
TTGTCTTAAATTAAGACAAAAATATTTTTCTTGTCTAAATTAAAACAAACATGATTTCTTATCTA
AATTAAGACAAAAATATTTTTC
Found at i:19151025 original size:35 final size:37
Alignment explanation
Indices: 19150977--19151074 Score: 128
Period size: 35 Copynumber: 2.6 Consensus size: 37
19150967 AAAAGGTAGG
*
19150977 AAGGTTGTGCTTGATCCTTAAAAGGTAGTG-TTGTT-
1 AAGGTTGTGCTTGATCCTTAAAAAGTAGTGATTGTTA
* *
19151012 AAGGTTGTACTTGATCCTAAAAAAAGTAGTGACTTGTTGA
1 AAGGTTGTGCTTGATCCT-TAAAAAGTAGTGA-TTGTT-A
19151052 AAGGTTGTGCTTGATCCTTAAAA
1 AAGGTTGTGCTTGATCCTTAAAA
19151075 TGAAGTTGTT
Statistics
Matches: 53, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
35 17 0.32
36 10 0.19
38 5 0.09
39 4 0.08
40 17 0.32
ACGTcount: A:0.30, C:0.10, G:0.24, T:0.36
Consensus pattern (37 bp):
AAGGTTGTGCTTGATCCTTAAAAAGTAGTGATTGTTA
Found at i:19151084 original size:35 final size:36
Alignment explanation
Indices: 19150977--19151094 Score: 98
Period size: 40 Copynumber: 3.2 Consensus size: 36
19150967 AAAAGGTAGG
* * *
19150977 AAGGTTGTGCTTGATCCTTAAAAGGTAG-TGTTGTT
1 AAGGTTGTGCTTGATCCTTAAAATGAAGTTGTTGTA
* *
19151012 AAGGTTGTACTTGATCC-TAAAA-AAAGTAGTGACTTGTTGA
1 AAGGTTGTGCTTGATCCTTAAAATGAAGT--TG--TTG-T-A
*
19151052 AAGGTTGTGCTTGATCCTTAAAATGAAGTTGTTTATA
1 AAGGTTGTGCTTGATCCTTAAAATGAAGTTG-TTGTA
19151089 AAGGTT
1 AAGGTT
19151095 ATACCTTAAC
Statistics
Matches: 66, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
33 2 0.03
34 5 0.08
35 16 0.24
36 2 0.03
37 7 0.11
38 4 0.06
39 3 0.05
40 18 0.27
41 5 0.08
42 4 0.06
ACGTcount: A:0.30, C:0.08, G:0.25, T:0.37
Consensus pattern (36 bp):
AAGGTTGTGCTTGATCCTTAAAATGAAGTTGTTGTA
Found at i:19159950 original size:22 final size:22
Alignment explanation
Indices: 19159894--19159964 Score: 69
Period size: 22 Copynumber: 3.2 Consensus size: 22
19159884 TATATGTTCA
19159894 TTATTATTATTTTTTATCATTTT
1 TTATT-TTATTTTTTATCATTTT
*
19159917 TTATTTCA-TTTTTAGTC-TTTGT
1 TTATTTTATTTTTTA-TCATTT-T
19159939 TT-TTTTATTTTTTAAT-ATTTT
1 TTATTTTATTTTTT-ATCATTTT
19159960 TTATT
1 TTATT
19159965 AATATCATAA
Statistics
Matches: 40, Mismatches: 2, Indels: 13
0.73 0.04 0.24
Matches are distributed among these distances:
21 16 0.40
22 18 0.45
23 6 0.15
ACGTcount: A:0.18, C:0.04, G:0.03, T:0.75
Consensus pattern (22 bp):
TTATTTTATTTTTTATCATTTT
Found at i:19161617 original size:5 final size:5
Alignment explanation
Indices: 19161609--19161656 Score: 53
Period size: 5 Copynumber: 9.0 Consensus size: 5
19161599 AATATTATAT
19161609 TAAAA T-AAA TAAATA TTAAATA TTAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAA-A -TAAA-A -TAAAA TAAAA TAAAA TAAAA TAAAA
19161657 AATAATGTCT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
4 4 0.10
5 23 0.57
6 2 0.05
7 11 0.28
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (5 bp):
TAAAA
Found at i:19161631 original size:23 final size:22
Alignment explanation
Indices: 19161605--19161661 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 22
19161595 TAGTAATATT
*
19161605 ATATTAAAATAAATAAATATTAA
1 ATATTAAAATAAATAAA-ATAAA
19161628 ATATTAAAATAAAATAAAATAAA
1 ATATTAAAAT-AAATAAAATAAA
*
19161651 ATA-AAAAATAA
1 ATATTAAAATAA
19161662 TGTCTACAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
21 2 0.06
22 5 0.16
23 17 0.55
24 7 0.23
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (22 bp):
ATATTAAAATAAATAAAATAAA
Found at i:19161650 original size:15 final size:16
Alignment explanation
Indices: 19161607--19161656 Score: 59
Period size: 15 Copynumber: 3.1 Consensus size: 16
19161597 GTAATATTAT
19161607 ATTAAAAT-AAATAAA
1 ATTAAAATAAAATAAA
19161622 TATTAAATATTAAAATAAA
1 -ATTAAA-A-TAAAATAAA
19161641 A-TAAAATAAAATAAA
1 ATTAAAATAAAATAAA
19161656 A
1 A
19161657 AATAATGTCT
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
15 10 0.32
16 7 0.23
17 5 0.16
18 2 0.06
19 7 0.23
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (16 bp):
ATTAAAATAAAATAAA
Found at i:19172565 original size:2 final size:2
Alignment explanation
Indices: 19172558--19172582 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
19172548 GGCTGATTTC
19172558 CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT C
19172583 CATTTATTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:19173648 original size:20 final size:19
Alignment explanation
Indices: 19173607--19173648 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
19173597 TTAGCCTTTG
*
19173607 TTTGGTTTTCTTTCATTGT
1 TTTGGTTTTCTTTCAATGT
*
19173626 TTTGGTTTTCTTTTTAATGT
1 TTTGGTTTTC-TTTCAATGT
19173646 TTT
1 TTT
19173649 TTCCTCCACA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 10 0.50
20 10 0.50
ACGTcount: A:0.07, C:0.07, G:0.14, T:0.71
Consensus pattern (19 bp):
TTTGGTTTTCTTTCAATGT
Found at i:19174000 original size:26 final size:25
Alignment explanation
Indices: 19173963--19174024 Score: 76
Period size: 26 Copynumber: 2.5 Consensus size: 25
19173953 ATGTCATGTG
*
19173963 GTCATGTCATCATATCA-CATCAACAT
1 GTCATGTTATCAT-TCATCAT-AACAT
19173989 GTCATGTTATCATTCATCATAACAT
1 GTCATGTTATCATTCATCATAACAT
19174014 GTCA-G-TATCAT
1 GTCATGTTATCAT
19174025 GTGACAAAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
23 6 0.18
24 1 0.03
25 12 0.35
26 15 0.44
ACGTcount: A:0.32, C:0.23, G:0.10, T:0.35
Consensus pattern (25 bp):
GTCATGTTATCATTCATCATAACAT
Found at i:19178505 original size:2 final size:2
Alignment explanation
Indices: 19178498--19178545 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
19178488 ATAAATTATC
19178498 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
19178540 AT AT AT
1 AT AT AT
19178546 TCAGAAAGAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:19179343 original size:27 final size:27
Alignment explanation
Indices: 19179304--19179364 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
19179294 AGGTGGTGAG
*
19179304 GGTGGTGTATTGTAGTAATGGCTTGGT
1 GGTGGTGTATTGTAGTAATGGCTTCGT
* *
19179331 GGTGGTG-AGTTGTAGTAATTGTTTCGT
1 GGTGGTGTA-TTGTAGTAATGGCTTCGT
19179358 GGTGGTG
1 GGTGGTG
19179365 GTGGTGTATT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 1 0.03
27 29 0.97
ACGTcount: A:0.13, C:0.03, G:0.43, T:0.41
Consensus pattern (27 bp):
GGTGGTGTATTGTAGTAATGGCTTCGT
Found at i:19179444 original size:39 final size:39
Alignment explanation
Indices: 19179400--19179479 Score: 117
Period size: 39 Copynumber: 2.1 Consensus size: 39
19179390 TGGAGGTGGT
19179400 GGGGGTGATTGTTTGGGCCCATACTCAAC-GAGTGGAGGC
1 GGGGGTGATTGTTTGGGCCCATACTCAACTG-GTGGAGGC
* * *
19179439 GGGGGTGATTGTTTGGGCTCATAGTGAACTGGTGGAGGC
1 GGGGGTGATTGTTTGGGCCCATACTCAACTGGTGGAGGC
19179478 GG
1 GG
19179480 CGGCGGAAGA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
39 36 0.97
40 1 0.03
ACGTcount: A:0.16, C:0.14, G:0.45, T:0.25
Consensus pattern (39 bp):
GGGGGTGATTGTTTGGGCCCATACTCAACTGGTGGAGGC
Found at i:19183613 original size:23 final size:23
Alignment explanation
Indices: 19183585--19183641 Score: 89
Period size: 22 Copynumber: 2.5 Consensus size: 23
19183575 GTTTAGAGTT
*
19183585 TGTGAAACGACATGTTGGGAATG
1 TGTGAAACGACATGGTGGGAATG
19183608 TGTG-AACGACATGGTGGGAATG
1 TGTGAAACGACATGGTGGGAATG
*
19183630 TGTGACACGACA
1 TGTGAAACGACA
19183642 GGGTTTAGAG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
22 21 0.68
23 10 0.32
ACGTcount: A:0.30, C:0.12, G:0.35, T:0.23
Consensus pattern (23 bp):
TGTGAAACGACATGGTGGGAATG
Found at i:19183675 original size:47 final size:47
Alignment explanation
Indices: 19183608--19184221 Score: 612
Period size: 47 Copynumber: 13.1 Consensus size: 47
19183598 GTTGGGAATG
* * * * * *
19183608 TGTGA-ACGACATGGTGGGAATGTGTGACACGACAGGGTTTAGAGTT
1 TGTGACACGCCATGGAGGGAATCTGTGACATGGCAGGGTTCAGAGTT
* * * * *
19183654 TGTGACACACCATGGAGGGAATCTATGACACGACAAGGTTCAGAGTT
1 TGTGACACGCCATGGAGGGAATCTGTGACATGGCAGGGTTCAGAGTT
*
19183701 TGTGACACGGCATGGAGGGAATCTGTGACATGGCAGGGTTCAGAGTT
1 TGTGACACGCCATGGAGGGAATCTGTGACATGGCAGGGTTCAGAGTT
* * * *** *
19183748 TGTGACATGCCATGGAGGGAATATGTGACATGCCAACATTTAGAGTT
1 TGTGACACGCCATGGAGGGAATCTGTGACATGGCAGGGTTCAGAGTT
* * *
19183795 TGTGACACGCCATGGAGGGAATCTGTGACA-CGCTAGTGATCAGAGTT
1 TGTGACACGCCATGGAGGGAATCTGTGACATGGC-AGGGTTCAGAGTT
* * ** *
19183842 TGTGATACGCCATGGAGAGAATCTGTGACATGAAAGCGTTCAGAGTT
1 TGTGACACGCCATGGAGGGAATCTGTGACATGGCAGGGTTCAGAGTT
* * * *
19183889 TGTGACATGCCATGGAGGAAATCTGTGACATGGTAGTGTTCAGAGTT
1 TGTGACACGCCATGGAGGGAATCTGTGACATGGCAGGGTTCAGAGTT
* * * *
19183936 TGTGACACGCCATGGAGGGAATCTGTAACA-CGCTAGTGATCAGAGTT
1 TGTGACACGCCATGGAGGGAATCTGTGACATGGC-AGGGTTCAGAGTT
* * ** *
19183983 TGTGATACGCCATGGAGAGAATCTGTGACATGAAAGCGTTCAGAGTT
1 TGTGACACGCCATGGAGGGAATCTGTGACATGGCAGGGTTCAGAGTT
* * * * *
19184030 TGTGACATGCCATGGAGGAAATCTGTGACATGGTAGTGTTTAGAGTT
1 TGTGACACGCCATGGAGGGAATCTGTGACATGGCAGGGTTCAGAGTT
* * * *
19184077 TGTGACACGCCATGGAGGGAATCTGTAACA-CGCTAGCGTTTAGAGTT
1 TGTGACACGCCATGGAGGGAATCTGTGACATGGC-AGGGTTCAGAGTT
* * ** *
19184124 TGTGATACGCCGTGGAGAAAATCTATGACATGGCAGGGTTCAGAGTT
1 TGTGACACGCCATGGAGGGAATCTGTGACATGGCAGGGTTCAGAGTT
* * * * * *
19184171 TGTCAAACTCCATGGA--G-ATCTGTGACACGGCAGGGTTTAGAGTG
1 TGTGACACGCCATGGAGGGAATCTGTGACATGGCAGGGTTCAGAGTT
19184215 TGTGACA
1 TGTGACA
19184222 TGGCATGGCT
Statistics
Matches: 469, Mismatches: 92, Indels: 16
0.81 0.16 0.03
Matches are distributed among these distances:
44 28 0.06
46 8 0.02
47 431 0.92
48 2 0.00
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (47 bp):
TGTGACACGCCATGGAGGGAATCTGTGACATGGCAGGGTTCAGAGTT
Found at i:19183825 original size:23 final size:23
Alignment explanation
Indices: 19183795--19184012 Score: 75
Period size: 23 Copynumber: 9.3 Consensus size: 23
19183785 ATTTAGAGTT
*
19183795 TGTGACACGCCATGGAGGGAATC
1 TGTGACACGCCATGGAGAGAATC
* * * *
19183818 TGTGACACGCTA-GTGATCAGAGTT
1 TGTGACACGCCATG-GA-GAGAATC
*
19183842 TGTGATACGCCATGGAGAGAATC
1 TGTGACACGCCATGGAGAGAATC
* * * ** * *
19183865 TGTGACATG-AAAGCGTTCAGAGTT
1 TGTGACACGCCATG-G-AGAGAATC
*
19183889 TGTGACATGCCATGGAG-GAAATC
1 TGTGACACGCCATGGAGAG-AATC
* ** *** * *
19183912 TGTGACATGGTAGTGTTCAGAGTT
1 TGTGACACGCCA-TGGAGAGAATC
*
19183936 TGTGACACGCCATGGAGGGAATC
1 TGTGACACGCCATGGAGAGAATC
* * * * *
19183959 TGTAACACGCTA-GTGATCAGAGTT
1 TGTGACACGCCATG-GA-GAGAATC
*
19183983 TGTGATACGCCATGGAGAGAATC
1 TGTGACACGCCATGGAGAGAATC
19184006 TGTGACA
1 TGTGACA
19184013 TGAAAGCGTT
Statistics
Matches: 130, Mismatches: 53, Indels: 24
0.63 0.26 0.12
Matches are distributed among these distances:
22 5 0.04
23 64 0.49
24 56 0.43
25 5 0.04
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.25
Consensus pattern (23 bp):
TGTGACACGCCATGGAGAGAATC
Found at i:19183871 original size:141 final size:141
Alignment explanation
Indices: 19183644--19184221 Score: 788
Period size: 141 Copynumber: 4.1 Consensus size: 141
19183634 ACACGACAGG
* * * * * *
19183644 GTTTAGAGTTTGTGACACACCATGGAGGGAATCTATGACACGACAAG-GTTCAGAGTTTGTGACA
1 GTTTAGAGTTTGTGACACGCCATGGAGGGAATCTGTAACACG-CTAGTGATCAGAGTTTGTGATA
* * ** * * *
19183708 CGGCATGGAGGGAATCTGTGACATGGCAGGGTTCAGAGTTTGTGACATGCCATGGAGGGAATATG
65 CGCCATGGAGAGAATCTGTGACATGAAAGCGTTCAGAGTTTGTGACATGCCATGGAGGAAATCTG
** **
19183773 TGACATGCCAAC
130 TGACATGGTAGT
* *
19183785 ATTTAGAGTTTGTGACACGCCATGGAGGGAATCTGTGACACGCTAGTGATCAGAGTTTGTGATAC
1 GTTTAGAGTTTGTGACACGCCATGGAGGGAATCTGTAACACGCTAGTGATCAGAGTTTGTGATAC
19183850 GCCATGGAGAGAATCTGTGACATGAAAGCGTTCAGAGTTTGTGACATGCCATGGAGGAAATCTGT
66 GCCATGGAGAGAATCTGTGACATGAAAGCGTTCAGAGTTTGTGACATGCCATGGAGGAAATCTGT
19183915 GACATGGTAGT
131 GACATGGTAGT
*
19183926 GTTCAGAGTTTGTGACACGCCATGGAGGGAATCTGTAACACGCTAGTGATCAGAGTTTGTGATAC
1 GTTTAGAGTTTGTGACACGCCATGGAGGGAATCTGTAACACGCTAGTGATCAGAGTTTGTGATAC
19183991 GCCATGGAGAGAATCTGTGACATGAAAGCGTTCAGAGTTTGTGACATGCCATGGAGGAAATCTGT
66 GCCATGGAGAGAATCTGTGACATGAAAGCGTTCAGAGTTTGTGACATGCCATGGAGGAAATCTGT
19184056 GACATGGTAGT
131 GACATGGTAGT
* * *
19184067 GTTTAGAGTTTGTGACACGCCATGGAGGGAATCTGTAACACGCTAGCGTTTAGAGTTTGTGATAC
1 GTTTAGAGTTTGTGACACGCCATGGAGGGAATCTGTAACACGCTAGTGATCAGAGTTTGTGATAC
* * * ** * * *
19184132 GCCGTGGAGAAAATCTATGACATGGCAGGGTTCAGAGTTTGTCAAACT-CCATGGA-G--ATCTG
66 GCCATGGAGAGAATCTGTGACATGAAAGCGTTCAGAGTTTGTGACA-TGCCATGGAGGAAATCTG
* * *
19184193 TGACACGGCAGG
130 TGACATGGTAGT
*
19184205 GTTTAGAGTGTGTGACA
1 GTTTAGAGTTTGTGACA
19184222 TGGCATGGCT
Statistics
Matches: 399, Mismatches: 36, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
138 30 0.08
140 4 0.01
141 364 0.91
142 1 0.00
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (141 bp):
GTTTAGAGTTTGTGACACGCCATGGAGGGAATCTGTAACACGCTAGTGATCAGAGTTTGTGATAC
GCCATGGAGAGAATCTGTGACATGAAAGCGTTCAGAGTTTGTGACATGCCATGGAGGAAATCTGT
GACATGGTAGT
Found at i:19184963 original size:31 final size:31
Alignment explanation
Indices: 19184862--19184969 Score: 148
Period size: 32 Copynumber: 3.5 Consensus size: 31
19184852 ATGTCAACGT
* * *
19184862 TGGCATGTTACAACATTTGAC-TTGATACGCA
1 TGGCGTGTTACAACATTTTACGTT-ATATGCA
*
19184893 TGGC-TGTTACAACATTTTACGTTATATTCA
1 TGGCGTGTTACAACATTTTACGTTATATGCA
19184923 TGGGCGTGTTACAACATTTTACGTTATATGCA
1 T-GGCGTGTTACAACATTTTACGTTATATGCA
19184955 TGGCGTGTTACAACA
1 TGGCGTGTTACAACA
19184970 CTATGGGTTA
Statistics
Matches: 70, Mismatches: 4, Indels: 6
0.88 0.05 0.08
Matches are distributed among these distances:
30 21 0.30
31 23 0.33
32 26 0.37
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36
Consensus pattern (31 bp):
TGGCGTGTTACAACATTTTACGTTATATGCA
Found at i:19189567 original size:145 final size:144
Alignment explanation
Indices: 19189243--19189587 Score: 426
Period size: 145 Copynumber: 2.4 Consensus size: 144
19189233 AAGAGCACGT
*
19189243 AAGGACGGTTCTAACGGTTTGTGTTCAACAATTCCATATGTGATTATCGAATAACATATCTGTGT
1 AAGGACGGTTCTAACGGTTTGTGTTCAACAATTTCATATGTGATTATCGAATAACATATCTGTGT
* * * *
19189308 TTGCAGTTGGACCATACACAATAGCTTCACAACCACTAAGAGGTCCTCCTCAAACTCACAGTGCT
66 TTGCAATTGGACCATACACAATAGCTCCACAACCACTAAGAGGTCCTCCTCAAACGCACAATGCT
*
19189373 AACGATGAGCTGGT
131 AACGATGAGCTGGC
* *
19189387 AAGGACGGTTCTAATGGTTTGTGTTCAACAATTTCATATGTGATTATCAAATAACATATCTGTGT
1 AAGGACGGTTCTAACGGTTTGTGTTCAACAATTTCATATGTGATTATCGAATAACATATCTGTGT
** * ** * * * *
19189452 TTGCAATTGGACCATGTGACGATAGCTCCTTAATCATTAAGAGGTCTTCCTCAGACGCACAATGC
66 TTGCAATTGGACCAT-ACACAATAGCTCCACAACCACTAAGAGGTCCTCCTCAAACGCACAATGC
* *
19189517 TAATGACCT-A-TTGGC
130 TAACGA--TGAGCTGGC
* * * *
19189532 AA-GATCGGTTCTAACGGTTTGTGTTCAACATTTTCACATATGTTTATCGAATAACA
1 AAGGA-CGGTTCTAACGGTTTGTGTTCAACAATTTCATATGTGATTATCGAATAACA
19189588 CTGTAATTTC
Statistics
Matches: 172, Mismatches: 25, Indels: 7
0.84 0.12 0.03
Matches are distributed among these distances:
144 78 0.45
145 92 0.53
146 1 0.01
147 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.32
Consensus pattern (144 bp):
AAGGACGGTTCTAACGGTTTGTGTTCAACAATTTCATATGTGATTATCGAATAACATATCTGTGT
TTGCAATTGGACCATACACAATAGCTCCACAACCACTAAGAGGTCCTCCTCAAACGCACAATGCT
AACGATGAGCTGGC
Found at i:19191874 original size:117 final size:117
Alignment explanation
Indices: 19191668--19192117 Score: 582
Period size: 117 Copynumber: 3.9 Consensus size: 117
19191658 CTGGAATAAG
* * * * ** * *
19191668 TCAGCGTGTCACGCCAAGTATCTGCTTCCACTCAGCATGTCACTACAATTGGGGTGTGTCGTGTC
1 TCAGCATGTCACGCCAAGTATCTACTTCCACTCAGCGTGTCACCACAATTAAGGCGTGCCGTGTC
* * * *
19191733 ACCACACAATATTGCAAGAAGTCAGCATGTCGCCATAGAAATCTGCATGCAC
66 ACCCCACAATACTGCAAGAAGTCAGCGTGTCACCATAGAAATCTGCATGCAC
* * *
19191785 TCAGCATGTCATGCCAAGTATCTACTTCCACTCAGCGTGCCACCACAATTAAGGTGTGTCC-TGT
1 TCAGCATGTCACGCCAAGTATCTACTTCCACTCAGCGTGTCACCACAATTAAGGCGTG-CCGTGT
*
19191849 CACCCCACAACACTGCAAGAAGTCAGCGTGTCACCACTA-AAATCTGCATGCAC
65 CACCCCACAATACTGCAAGAAGTCAGCGTGTCACCA-TAGAAATCTGCATGCAC
*
19191902 TCAGCATGTCACGCCAAGTATCTACTTCCACTCAGCGTGTCACCATAATTAAGGCGTGCCGTGTC
1 TCAGCATGTCACGCCAAGTATCTACTTCCACTCAGCGTGTCACCACAATTAAGGCGTGCCGTGTC
* * * * *
19191967 ACCCCACAATACTGTAAGAAGTTAGTGTGTCACCACAGAAATCTGTATGCAC
66 ACCCCACAATACTGCAAGAAGTCAGCGTGTCACCATAGAAATCTGCATGCAC
* * ** * *
19192019 TCAGCGTGTCACGCCAAG-ATCTGCTTCCACTCAATGTGTCACCATAATTGAGGCGTGCCGTGTC
1 TCAGCATGTCACGCCAAGTATCTACTTCCACTCAGCGTGTCACCACAATTAAGGCGTGCCGTGTC
* * *
19192083 ACCCCACAATACTACAAAAAGTTAGCGTGTCACCA
66 ACCCCACAATACTGCAAGAAGTCAGCGTGTCACCA
19192118 CAATTGGGGC
Statistics
Matches: 296, Mismatches: 33, Indels: 9
0.88 0.10 0.03
Matches are distributed among these distances:
116 76 0.26
117 217 0.73
118 3 0.01
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.24
Consensus pattern (117 bp):
TCAGCATGTCACGCCAAGTATCTACTTCCACTCAGCGTGTCACCACAATTAAGGCGTGCCGTGTC
ACCCCACAATACTGCAAGAAGTCAGCGTGTCACCATAGAAATCTGCATGCAC
Found at i:19192117 original size:55 final size:55
Alignment explanation
Indices: 19192054--19192175 Score: 154
Period size: 55 Copynumber: 2.2 Consensus size: 55
19192044 TCCACTCAAT
* * *
19192054 GTGTCACCATAATTGAGGCGTGCCGTGTCACCCCACAATACTACAAAAAGTTAGC
1 GTGTCACCACAATTGAGGCCTGCCGTGTCACCCCACAATACTACAAAAAGTCAGC
* * * * * *
19192109 GTGTCACCACAATTGGGGCCTGCTGTTTCACCCCACAATGCTGCAAGAAGTCAGC
1 GTGTCACCACAATTGAGGCCTGCCGTGTCACCCCACAATACTACAAAAAGTCAGC
*
19192164 GTGTCACTACAA
1 GTGTCACCACAA
19192176 AAATCTGCAT
Statistics
Matches: 57, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
55 57 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (55 bp):
GTGTCACCACAATTGAGGCCTGCCGTGTCACCCCACAATACTACAAAAAGTCAGC
Found at i:19199147 original size:31 final size:30
Alignment explanation
Indices: 19199100--19199208 Score: 128
Period size: 31 Copynumber: 3.5 Consensus size: 30
19199090 TTTGTCAGTC
*
19199100 ATGTTGGAACACGCCATGCATATAATGTAAA
1 ATGTTGTAACACGCCATGCATATAA-GTAAA
* *
19199131 ATGTTATAACATGCCATGCATATAAGGTAAA
1 ATGTTGTAACACGCCATGCATATAA-GTAAA
* * *
19199162 ATGTTGTAACACGTCATGCGTATCAAGTCAA
1 ATGTTGTAACACGCCATGCATAT-AAGTAAA
*
19199193 ATGTTGTAACATGCCA
1 ATGTTGTAACACGCCA
19199209 ACGCTGACAC
Statistics
Matches: 66, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
31 64 0.97
32 2 0.03
ACGTcount: A:0.37, C:0.17, G:0.18, T:0.28
Consensus pattern (30 bp):
ATGTTGTAACACGCCATGCATATAAGTAAA
Found at i:19199463 original size:61 final size:63
Alignment explanation
Indices: 19199398--19199519 Score: 167
Period size: 61 Copynumber: 2.0 Consensus size: 63
19199388 ACCACAACCC
* * *
19199398 GATGACGATGGTGCTCAACAGAAAGTTGAC-AAGCTCATA-AGTTCAGAGAGTTGAGAGAGTT
1 GATGAAGATGGTGCTCAACAGAAAGTTGACAAAGCTCAGACAGTTCAAAGAGTTGAGAGAGTT
* * * *
19199459 GATGAAGATGGTGCTCAACAGAGAGTTGGCAAAGTTGAGACAGTTCAAAGAGTTGAGAGAG
1 GATGAAGATGGTGCTCAACAGAAAGTTGACAAAGCTCAGACAGTTCAAAGAGTTGAGAGAG
19199520 AAAGATGAGC
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
61 27 0.52
62 6 0.12
63 19 0.37
ACGTcount: A:0.35, C:0.11, G:0.32, T:0.21
Consensus pattern (63 bp):
GATGAAGATGGTGCTCAACAGAAAGTTGACAAAGCTCAGACAGTTCAAAGAGTTGAGAGAGTT
Found at i:19202976 original size:13 final size:13
Alignment explanation
Indices: 19202958--19202983 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
19202948 TTTTCTAAGT
19202958 CTAGAAGGGGTCA
1 CTAGAAGGGGTCA
19202971 CTAGAAGGGGTCA
1 CTAGAAGGGGTCA
19202984 AAATATGTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.38, T:0.15
Consensus pattern (13 bp):
CTAGAAGGGGTCA
Found at i:19207754 original size:72 final size:72
Alignment explanation
Indices: 19207637--19207835 Score: 204
Period size: 72 Copynumber: 2.8 Consensus size: 72
19207627 TCAAATTATA
* ** * * **
19207637 GACAAAGAGC-TCTTAGTCGACTAACTTTCTTCTTGGTCGATTAAGTTGGTTCT-TCTTCTGGTC
1 GACAAAGAGCAT-TTAGTCAACTAACTCACATCTTGGTCGACTAAGTTGGTTCTGTCTTCAAGT-
19207700 ACAGATTCT
64 ACAGATTCT
* * * * *
19207709 GACAAAGAGCATTTAGTCAATTAACTCACATCTTGGTCAACTAAGTTAGTTCTGTCTTGAAGTTC
1 GACAAAGAGCATTTAGTCAACTAACTCACATCTTGGTCGACTAAGTTGGTTCTGTCTTCAAGTAC
*
19207774 AGATTTT
66 AGATTCT
* * * * *
19207781 GGCAGAGAGCATTTAGTCGACTAACTCACATATTGGTCGACTAAGTCGGTTCTGT
1 GACAAAGAGCATTTAGTCAACTAACTCACATCTTGGTCGACTAAGTTGGTTCTGT
19207836 TTCTCAATAT
Statistics
Matches: 104, Mismatches: 21, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
72 97 0.93
73 7 0.07
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.35
Consensus pattern (72 bp):
GACAAAGAGCATTTAGTCAACTAACTCACATCTTGGTCGACTAAGTTGGTTCTGTCTTCAAGTAC
AGATTCT
Found at i:19216429 original size:35 final size:34
Alignment explanation
Indices: 19216365--19216498 Score: 107
Period size: 32 Copynumber: 4.0 Consensus size: 34
19216355 GAAAAGTTAG
* * *
19216365 TTGTTG-GGTTTTGGTTGATCCTGT-AAAAACCA
1 TTGTTGAGGTTGTGGTTGAGCCTTTGAAAAACCA
*
19216397 TTGTTGTAGGTTGTGGTTGAGCCTTTGGAAAACCA
1 TTGTTG-AGGTTGTGGTTGAGCCTTTGAAAAACCA
* * * ** *
19216432 CT-TTG-GGTTTTAGTTGAGCCCATGAAAAATCA
1 TTGTTGAGGTTGTGGTTGAGCCTTTGAAAAACCA
*
19216464 TTG-TGAAAGGTTGTGGTTGAGCCTTTAAAAAACCA
1 TTGTTG--AGGTTGTGGTTGAGCCTTTGAAAAACCA
19216499 CTTTGGGTTT
Statistics
Matches: 77, Mismatches: 18, Indels: 11
0.73 0.17 0.10
Matches are distributed among these distances:
32 30 0.39
34 18 0.23
35 29 0.38
ACGTcount: A:0.25, C:0.13, G:0.26, T:0.36
Consensus pattern (34 bp):
TTGTTGAGGTTGTGGTTGAGCCTTTGAAAAACCA
Found at i:19216442 original size:66 final size:67
Alignment explanation
Indices: 19216368--19216542 Score: 223
Period size: 67 Copynumber: 2.6 Consensus size: 67
19216358 AAGTTAGTTG
* * **
19216368 TTGGGTTTTGGTTGATCCTGTAAAAACCATTGTTG-TAGGTTGTGGTTGAGCCTTTGGAAAACCA
1 TTGGGTTTTAGTTGATCCTGTAAAAACCATTGTTGAAAGGTTGTGGTTGAGCCTTTAAAAAACCA
19216432 CT
66 CT
* *
19216434 TTGGGTTTTAGTTGAGCCCATG-AAAAATCATTG-TGAAAGGTTGTGGTTGAGCCTTTAAAAAAC
1 TTGGGTTTTAGTTGA-TCC-TGTAAAAACCATTGTTGAAAGGTTGTGGTTGAGCCTTTAAAAAAC
19216497 CACT
64 CACT
* *
19216501 TTGGGTTTTAGTTGATCTCAGTAAAAACTATTG-TGAAAGGTT
1 TTGGGTTTTAGTTGATC-CTGTAAAAACCATTGTTGAAAGGTT
19216543 TTGGCTAAGC
Statistics
Matches: 94, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
66 18 0.19
67 74 0.79
68 2 0.02
ACGTcount: A:0.26, C:0.12, G:0.25, T:0.37
Consensus pattern (67 bp):
TTGGGTTTTAGTTGATCCTGTAAAAACCATTGTTGAAAGGTTGTGGTTGAGCCTTTAAAAAACCA
CT
Found at i:19216450 original size:32 final size:32
Alignment explanation
Indices: 19216368--19216515 Score: 102
Period size: 32 Copynumber: 4.5 Consensus size: 32
19216358 AAGTTAGTTG
* * * *
19216368 TTGGGTTTTGGTTGATCCTGT-AAAAACCATT
1 TTGGGTTTTAGTTGAGCCTTTGAAAAACCACT
* * *
19216399 GTTGTAGGTTGTGGTTGAGCCTTTGGAAAACCACT
1 -TTG--GGTTTTAGTTGAGCCTTTGAAAAACCACT
** *
19216434 TTGGGTTTTAGTTGAGCCCATGAAAAATCA-T
1 TTGGGTTTTAGTTGAGCCTTTGAAAAACCACT
* * *
19216465 TGTGAAAGGTTGTGGTTGAGCCTTTAAAAAACCACT
1 T-TG---GGTTTTAGTTGAGCCTTTGAAAAACCACT
19216501 TTGGGTTTTAGTTGA
1 TTGGGTTTTAGTTGA
19216516 TCTCAGTAAA
Statistics
Matches: 89, Mismatches: 19, Indels: 16
0.72 0.15 0.13
Matches are distributed among these distances:
31 2 0.02
32 36 0.40
34 18 0.20
35 31 0.35
36 2 0.02
ACGTcount: A:0.24, C:0.12, G:0.26, T:0.37
Consensus pattern (32 bp):
TTGGGTTTTAGTTGAGCCTTTGAAAAACCACT
Found at i:19223319 original size:16 final size:17
Alignment explanation
Indices: 19223293--19223324 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
19223283 GAAGCCAAAG
19223293 AAAAGGAAATTGAATGA
1 AAAAGGAAATTGAATGA
19223310 AAAAGG-AATTGAATG
1 AAAAGGAAATTGAATG
19223325 CATATTTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.56, C:0.00, G:0.25, T:0.19
Consensus pattern (17 bp):
AAAAGGAAATTGAATGA
Found at i:19226295 original size:40 final size:39
Alignment explanation
Indices: 19226240--19226354 Score: 151
Period size: 40 Copynumber: 2.9 Consensus size: 39
19226230 ATCATCACAC
19226240 CGGAGTCATCGTGTGCATCCCCCCACATCGTGCACATAGT
1 CGGAGTCATCGTGTGCATCCCCCCACATCGTGCACA-AGT
19226280 CGGAGTCATCGTGTGCATCCCCCCACATCGTGCAC-AGT
1 CGGAGTCATCGTGTGCATCCCCCCACATCGTGCACAAGT
* * * * * *
19226318 CAGTGCCACCATGTACATCCCCCCCACATCGTGCACA
1 CGGAGTCATCGTGTGCAT-CCCCCCACATCGTGCACA
19226355 CGGGCACTAT
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
38 15 0.22
39 17 0.25
40 35 0.52
ACGTcount: A:0.21, C:0.39, G:0.20, T:0.20
Consensus pattern (39 bp):
CGGAGTCATCGTGTGCATCCCCCCACATCGTGCACAAGT
Found at i:19226476 original size:2 final size:2
Alignment explanation
Indices: 19226469--19226501 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
19226459 CATGCACAAC
*
19226469 AT AT AT AT AT CT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
19226502 CCAACATAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:19232836 original size:2 final size:2
Alignment explanation
Indices: 19232831--19232861 Score: 53
Period size: 2 Copynumber: 15.0 Consensus size: 2
19232821 TCTATGTATG
19232831 TA TA TA TA TA TA TA TA TA TA TA TA TCA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA T-A TA TA
19232862 GCAACATAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 26 0.93
3 2 0.07
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:19243548 original size:34 final size:34
Alignment explanation
Indices: 19243510--19243577 Score: 82
Period size: 34 Copynumber: 2.0 Consensus size: 34
19243500 TCACCAAGCT
* *
19243510 TTTACAATTGCTTTTCGCAGGCTCAACCAAAACC
1 TTTACAATAGCTTTTCACAGGCTCAACCAAAACC
* * * *
19243544 TTTACACTAGTTTTTCACGGGCTCAACTAAAACC
1 TTTACAATAGCTTTTCACAGGCTCAACCAAAACC
19243578 CAAAGTGGTT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (34 bp):
TTTACAATAGCTTTTCACAGGCTCAACCAAAACC
Found at i:19249630 original size:8 final size:8
Alignment explanation
Indices: 19249617--19249647 Score: 62
Period size: 8 Copynumber: 3.9 Consensus size: 8
19249607 AATATAATTA
19249617 AAACTAAT
1 AAACTAAT
19249625 AAACTAAT
1 AAACTAAT
19249633 AAACTAAT
1 AAACTAAT
19249641 AAACTAA
1 AAACTAA
19249648 AAATAAAACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.65, C:0.13, G:0.00, T:0.23
Consensus pattern (8 bp):
AAACTAAT
Found at i:19253893 original size:19 final size:19
Alignment explanation
Indices: 19253855--19253893 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
19253845 GTCAACAATT
* *
19253855 AGAAAAATAGAAGAAGAAA
1 AGAAAAATAAAAGAAAAAA
19253874 AGAAAAATAAAAGAAAAAA
1 AGAAAAATAAAAGAAAAAA
19253893 A
1 A
19253894 AAGACAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.79, C:0.00, G:0.15, T:0.05
Consensus pattern (19 bp):
AGAAAAATAAAAGAAAAAA
Found at i:19261022 original size:35 final size:35
Alignment explanation
Indices: 19260983--19261129 Score: 188
Period size: 35 Copynumber: 4.2 Consensus size: 35
19260973 AGTGTGGATA
19260983 ATGATATTGAAGTGTGCGAGTAGGGAGTGCACACG
1 ATGATATTGAAGTGTGCGAGTAGGGAGTGCACACG
* * *
19261018 ATGATGTCGAAGTGTGCGAGTAGGGAGTGCACACT
1 ATGATATTGAAGTGTGCGAGTAGGGAGTGCACACG
* * * *
19261053 ATGATGTTGAAATGTGCGAGTAAGGAATGCACACG
1 ATGATATTGAAGTGTGCGAGTAGGGAGTGCACACG
* * *
19261088 ATGATATAGACA-TGTGCGAGTATGGAGTGCACATG
1 ATGATATTGA-AGTGTGCGAGTAGGGAGTGCACACG
19261123 ATGATAT
1 ATGATAT
19261130 ATAGTGGGCG
Statistics
Matches: 98, Mismatches: 13, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
35 97 0.99
36 1 0.01
ACGTcount: A:0.31, C:0.12, G:0.33, T:0.24
Consensus pattern (35 bp):
ATGATATTGAAGTGTGCGAGTAGGGAGTGCACACG
Found at i:19265356 original size:35 final size:35
Alignment explanation
Indices: 19265316--19265411 Score: 120
Period size: 35 Copynumber: 2.7 Consensus size: 35
19265306 TACTTGATTA
* **
19265316 AAATTGTTTAATTAAGTTGTTGGGTTTAATTAATT
1 AAATTGTTTAATTAAGTTATTGGGCCTAATTAATT
*
19265351 AAATTGTTTAATTAAGTTATTGGGCCTAATTGATT
1 AAATTGTTTAATTAAGTTATTGGGCCTAATTAATT
***
19265386 AAATTAAATAATTAAGTTAATTGGGC
1 AAATTGTTTAATTAAGTT-ATTGGGC
19265412 TTCTTAATTA
Statistics
Matches: 53, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
35 46 0.87
36 7 0.13
ACGTcount: A:0.35, C:0.03, G:0.17, T:0.45
Consensus pattern (35 bp):
AAATTGTTTAATTAAGTTATTGGGCCTAATTAATT
Found at i:19266821 original size:36 final size:36
Alignment explanation
Indices: 19266728--19266826 Score: 103
Period size: 36 Copynumber: 2.8 Consensus size: 36
19266718 GGAATGTGTC
*
19266728 TTTTAATGAGATCAAGCAAT-ACCCTCACAATGACT
1 TTTTAATGAGATCAAGCAATAACCCTTACAATGACT
* ** * * *
19266763 TTTTCACAAAATCAAGCGATAACCCTTAC-ATCTACT
1 TTTTAATGAGATCAAGCAATAACCCTTACAAT-GACT
*
19266799 TTTTAATGAGATAAAGCAATAACCCTTA
1 TTTTAATGAGATCAAGCAATAACCCTTA
19266827 TAACCACTTT
Statistics
Matches: 49, Mismatches: 13, Indels: 3
0.75 0.20 0.05
Matches are distributed among these distances:
35 17 0.35
36 32 0.65
ACGTcount: A:0.38, C:0.22, G:0.09, T:0.30
Consensus pattern (36 bp):
TTTTAATGAGATCAAGCAATAACCCTTACAATGACT
Found at i:19269599 original size:17 final size:17
Alignment explanation
Indices: 19269574--19269627 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 17
19269564 AATTTGATGA
*
19269574 ATTTATTTTTTATTTTT
1 ATTTATTTTTAATTTTT
*
19269591 ATTTTTTTTTAATTTTT
1 ATTTATTTTTAATTTTT
* * *
19269608 AATTATCTTATAATTATT
1 ATTTAT-TTTTAATTTTT
19269626 AT
1 AT
19269628 AAAATTATAA
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
17 19 0.66
18 10 0.34
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (17 bp):
ATTTATTTTTAATTTTT
Found at i:19276718 original size:18 final size:16
Alignment explanation
Indices: 19276676--19276722 Score: 67
Period size: 17 Copynumber: 2.8 Consensus size: 16
19276666 ATCTTCTTTA
*
19276676 AAATTGGGGCCTCCCC
1 AAATTGGGGCCTACCC
19276692 AAATTGGGGGCCTACCC
1 AAATT-GGGGCCTACCC
19276709 AAATTTGGGGCCTA
1 AAA-TTGGGGCCTA
19276723 AAGCCCTTGC
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
16 5 0.18
17 21 0.75
18 2 0.07
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (16 bp):
AAATTGGGGCCTACCC
Found at i:19283120 original size:67 final size:67
Alignment explanation
Indices: 19283043--19283215 Score: 233
Period size: 67 Copynumber: 2.6 Consensus size: 67
19283033 AAATTAGTTG
** * *
19283043 TTGGGTTTTGGTTGATCTTGTGAAAAACCATTGTTG-TAGGTTGTGGTTGAGTTTTTGAAAAACC
1 TTGGGTTTTGGTTGATCCCGTGAAAAACCATTG-TGAAAGGTTATGGTTGAGTTTTTGAAAAACC
19283107 ACT
65 ACT
* *
19283110 TTGGGTTTTGGTTGAGCCCGTGAAAAATCATTGTGAAAGGTTATGGTTGAGTTTTTGAAAAACCA
1 TTGGGTTTTGGTTGATCCCGTGAAAAACCATTGTGAAAGGTTATGGTTGAGTTTTTGAAAAACCA
19283175 CT
66 CT
* * *
19283177 TTGGGTTTTTGTTGATCCCG-GTAAAAACTATTGTAAAAG
1 TTGGGTTTTGGTTGATCCCGTG-AAAAACCATTGTGAAAG
19283216 ATTTGAGCTA
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
66 3 0.03
67 90 0.97
ACGTcount: A:0.25, C:0.10, G:0.26, T:0.39
Consensus pattern (67 bp):
TTGGGTTTTGGTTGATCCCGTGAAAAACCATTGTGAAAGGTTATGGTTGAGTTTTTGAAAAACCA
CT
Found at i:19283134 original size:32 final size:32
Alignment explanation
Indices: 19283043--19283191 Score: 120
Period size: 35 Copynumber: 4.5 Consensus size: 32
19283033 AAATTAGTTG
* *
19283043 TTGGGTTTTGGTTGATCTTGTGAAAAACCATT
1 TTGGGTTTTGGTTGAGCTTGTGAAAAACCACT
* * *
19283075 GTTGTAGGTTGTGGTTGAGTTTTTGAAAAACCACT
1 -TTG--GGTTTTGGTTGAGCTTGTGAAAAACCACT
** *
19283110 TTGGGTTTTGGTTGAGCCCGTGAAAAATCA-T
1 TTGGGTTTTGGTTGAGCTTGTGAAAAACCACT
* * *
19283141 TGTGAAAGGTTATGGTTGAGTTTTTGAAAAACCACT
1 T-TG---GGTTTTGGTTGAGCTTGTGAAAAACCACT
*
19283177 TTGGGTTTTTGTTGA
1 TTGGGTTTTGGTTGA
19283192 TCCCGGTAAA
Statistics
Matches: 90, Mismatches: 19, Indels: 15
0.73 0.15 0.12
Matches are distributed among these distances:
31 2 0.02
32 33 0.37
33 3 0.03
34 3 0.03
35 47 0.52
36 2 0.02
ACGTcount: A:0.23, C:0.09, G:0.28, T:0.41
Consensus pattern (32 bp):
TTGGGTTTTGGTTGAGCTTGTGAAAAACCACT
Found at i:19283756 original size:3 final size:3
Alignment explanation
Indices: 19283748--19283775 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
19283738 CTATATAAAT
19283748 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
19283776 GACCAAAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:19288368 original size:25 final size:25
Alignment explanation
Indices: 19288334--19288383 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
19288324 AAAGACTTAG
19288334 TGAAAAATCTACTAATGATGCATAA
1 TGAAAAATCTACTAATGATGCATAA
19288359 TGAAAAATCTACTAATGATGCATAA
1 TGAAAAATCTACTAATGATGCATAA
19288384 GTTAGGCATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.48, C:0.12, G:0.12, T:0.28
Consensus pattern (25 bp):
TGAAAAATCTACTAATGATGCATAA
Found at i:19296685 original size:2 final size:2
Alignment explanation
Indices: 19296678--19296734 Score: 78
Period size: 2 Copynumber: 28.0 Consensus size: 2
19296668 AATGTTATGA
* * *
19296678 AT AT AT AT AT AT AT AT AN AT TT AT GAA AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT AT AT AT
19296721 AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT
19296735 GTATTTAATT
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
2 47 0.98
3 1 0.02
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.47
Consensus pattern (2 bp):
AT
Found at i:19296693 original size:27 final size:28
Alignment explanation
Indices: 19296663--19296720 Score: 77
Period size: 27 Copynumber: 2.1 Consensus size: 28
19296653 ATATTTCGTA
19296663 ATATT-AATGTTATG-AATATATATATAT
1 ATATTAAAT-TTATGAAATATATATATAT
*
19296690 ATA-TANATTTATGAAATATATATATAT
1 ATATTAAATTTATGAAATATATATATAT
19296717 ATAT
1 ATAT
19296721 ATATATATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
26 6 0.22
27 21 0.78
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.47
Consensus pattern (28 bp):
ATATTAAATTTATGAAATATATATATAT
Found at i:19306557 original size:26 final size:26
Alignment explanation
Indices: 19306497--19306558 Score: 106
Period size: 26 Copynumber: 2.4 Consensus size: 26
19306487 ACCATATACC
*
19306497 CATCATCAACATGCACACCATCCCAT
1 CATCATCATCATGCACACCATCCCAT
*
19306523 CATCATCATCATGCACATCATCCCAT
1 CATCATCATCATGCACACCATCCCAT
19306549 CATCATCATC
1 CATCATCATC
19306559 TCATATGCAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.32, C:0.40, G:0.03, T:0.24
Consensus pattern (26 bp):
CATCATCATCATGCACACCATCCCAT
Found at i:19306749 original size:82 final size:82
Alignment explanation
Indices: 19306607--19306775 Score: 311
Period size: 82 Copynumber: 2.1 Consensus size: 82
19306597 GGAGATCACG
* *
19306607 AAGCATCCCCCCCTTCACTCGGTAAGAGGTGCACTTCACTCCGGATCACGAAGCAACGGAGCAGT
1 AAGCTTCCCCCCCTTCACTCGGCAAGAGGTGCACTTCACTCCGGATCACGAAGCAACGGAGCAGT
19306672 CCCTTCCCTCCTCTTCC
66 CCCTTCCCTCCTCTTCC
*
19306689 AAGCTTCCCCCCCTTCACTCGGCAAGAGGTGCACTTCACTTCGGATCACGAAGCAACGGAGCAGT
1 AAGCTTCCCCCCCTTCACTCGGCAAGAGGTGCACTTCACTCCGGATCACGAAGCAACGGAGCAGT
19306754 CCCTTCCCTCCTCTTCC
66 CCCTTCCCTCCTCTTCC
19306771 AAGCT
1 AAGCT
19306776 CTTGGGTGGA
Statistics
Matches: 84, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
82 84 1.00
ACGTcount: A:0.21, C:0.40, G:0.18, T:0.21
Consensus pattern (82 bp):
AAGCTTCCCCCCCTTCACTCGGCAAGAGGTGCACTTCACTCCGGATCACGAAGCAACGGAGCAGT
CCCTTCCCTCCTCTTCC
Found at i:19306933 original size:42 final size:42
Alignment explanation
Indices: 19306875--19307039 Score: 294
Period size: 42 Copynumber: 3.9 Consensus size: 42
19306865 ATGGGGGCAA
* *
19306875 CAACGGCTTATGTGCACTCCCACTCACACATAGCCGGGTCAG
1 CAACGGCTTATGTGCACTCCTACTCGCACATAGCCGGGTCAG
* *
19306917 CAACGGCTTATATGCACTCCTACTCGCACATAGTCGGGTCAG
1 CAACGGCTTATGTGCACTCCTACTCGCACATAGCCGGGTCAG
19306959 CAACGGCTTATGTGCACTCCTACTCGCACATAGCCGGGTCAG
1 CAACGGCTTATGTGCACTCCTACTCGCACATAGCCGGGTCAG
19307001 CAACGGCTTATGTGCACTCCTACTCGCACATAGCCGGGT
1 CAACGGCTTATGTGCACTCCTACTCGCACATAGCCGGGT
19307040 TCAAATCAAC
Statistics
Matches: 117, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 117 1.00
ACGTcount: A:0.22, C:0.33, G:0.22, T:0.22
Consensus pattern (42 bp):
CAACGGCTTATGTGCACTCCTACTCGCACATAGCCGGGTCAG
Found at i:19310537 original size:35 final size:35
Alignment explanation
Indices: 19310465--19310570 Score: 117
Period size: 35 Copynumber: 3.1 Consensus size: 35
19310455 TTATAATTAG
* * **
19310465 ATCTACTTATTCATG-ATGCACTAATGTTACATGA
1 ATCTACTAATTCATGTATGCAATAATAATACATGA
* * * *
19310499 ATCTA-TCGATTCATGTATGCGATAGTAATATATGA
1 ATCTACT-AATTCATGTATGCAATAATAATACATGA
19310534 ATCTACTAATTCATGTATGCAATAATAATACATGA
1 ATCTACTAATTCATGTATGCAATAATAATACATGA
19310569 AT
1 AT
19310571 ACAATTAATG
Statistics
Matches: 58, Mismatches: 11, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
33 1 0.02
34 12 0.21
35 44 0.76
36 1 0.02
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.37
Consensus pattern (35 bp):
ATCTACTAATTCATGTATGCAATAATAATACATGA
Found at i:19312022 original size:28 final size:28
Alignment explanation
Indices: 19311969--19312021 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
19311959 TGGAGTATAG
*
19311969 GGGCGAAATGATAATTTTGTCACCCCAA
1 GGGCGAAATGATAAATTTGTCACCCCAA
19311997 GGGC-AAATCGATAAATTT-TCACCCC
1 GGGCGAAAT-GATAAATTTGTCACCCC
19312022 CGACACTTGT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
27 11 0.48
28 12 0.52
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (28 bp):
GGGCGAAATGATAAATTTGTCACCCCAA
Found at i:19314605 original size:15 final size:15
Alignment explanation
Indices: 19314555--19314605 Score: 68
Period size: 15 Copynumber: 3.4 Consensus size: 15
19314545 TTTAAAGATC
*
19314555 AAAGATTTTGGTTTT
1 AAAGTTTTTGGTTTT
*
19314570 AAAG-CTTTGGATTTT
1 AAAGTTTTTGG-TTTT
19314585 AAAGTTTTTGGTTTT
1 AAAGTTTTTGGTTTT
19314600 AAAGTT
1 AAAGTT
19314606 GTTTTAAGAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
14 5 0.16
15 22 0.69
16 5 0.16
ACGTcount: A:0.27, C:0.02, G:0.20, T:0.51
Consensus pattern (15 bp):
AAAGTTTTTGGTTTT
Found at i:19326852 original size:15 final size:15
Alignment explanation
Indices: 19326832--19326860 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
19326822 ATCAAAGGTG
19326832 AGATTTTTCAATTTA
1 AGATTTTTCAATTTA
19326847 AGATTTTTCAATTT
1 AGATTTTTCAATTT
19326861 TAGCTTAAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.31, C:0.07, G:0.07, T:0.55
Consensus pattern (15 bp):
AGATTTTTCAATTTA
Found at i:19329187 original size:2 final size:2
Alignment explanation
Indices: 19329180--19329207 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
19329170 TACCAAAATA
19329180 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
19329208 TAATTCCAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:19330568 original size:17 final size:17
Alignment explanation
Indices: 19330546--19330579 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
19330536 GTTCTTGATA
19330546 AAATAA-AACTCCTTATT
1 AAATAATAACT-CTTATT
19330563 AAATAATAACTCTTATT
1 AAATAATAACTCTTATT
19330580 TTATTATTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.47, C:0.15, G:0.00, T:0.38
Consensus pattern (17 bp):
AAATAATAACTCTTATT
Found at i:19330753 original size:28 final size:28
Alignment explanation
Indices: 19330722--19330786 Score: 87
Period size: 28 Copynumber: 2.3 Consensus size: 28
19330712 TAAGACAAAA
* *
19330722 AAATAT-TTTATCTTGTCTAAATTGAGAC
1 AAATATGTTT-TCTTCTCTAAATTAAGAC
19330750 AAATATGTTTTCTTCTCTAAATTAAGAC
1 AAATATGTTTTCTTCTCTAAATTAAGAC
*
19330778 AAAAATGTT
1 AAATATGTT
19330787 AAAGCTGCCT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
28 30 0.91
29 3 0.09
ACGTcount: A:0.38, C:0.11, G:0.09, T:0.42
Consensus pattern (28 bp):
AAATATGTTTTCTTCTCTAAATTAAGAC
Found at i:19354428 original size:28 final size:28
Alignment explanation
Indices: 19354388--19354441 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
19354378 TTCAATATAA
*
19354388 TACCTTTTCAAGGATTAAGTATAACTAT
1 TACCTTTTCAAGGATTAAGTACAACTAT
*
19354416 TACCTTTTCAAGGTTTAAGTACAACT
1 TACCTTTTCAAGGATTAAGTACAACT
19354442 TTTAAACACT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.33, C:0.17, G:0.11, T:0.39
Consensus pattern (28 bp):
TACCTTTTCAAGGATTAAGTACAACTAT
Found at i:19356924 original size:36 final size:37
Alignment explanation
Indices: 19356884--19356963 Score: 108
Period size: 37 Copynumber: 2.2 Consensus size: 37
19356874 GTTTTGGTTG
** *
19356884 AGGTTATGCCTAATCCTATT-AAAAGGCATGTTGTGA
1 AGGTTATGCCTAATCCTATTAAAAAAACATGTTGTAA
**
19356920 AGGTTATGCCTAATTTTATTAAAAAAACATGTTGTAA
1 AGGTTATGCCTAATCCTATTAAAAAAACATGTTGTAA
19356957 AGGTTAT
1 AGGTTAT
19356964 ATCTGTATTA
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
36 18 0.47
37 20 0.53
ACGTcount: A:0.35, C:0.10, G:0.19, T:0.36
Consensus pattern (37 bp):
AGGTTATGCCTAATCCTATTAAAAAAACATGTTGTAA
Found at i:19359171 original size:38 final size:38
Alignment explanation
Indices: 19359128--19359206 Score: 149
Period size: 38 Copynumber: 2.1 Consensus size: 38
19359118 TCTTACACTA
*
19359128 AAGATCAGCACATTCGAGGAAGAATTAGAAGAGTTGTC
1 AAGATCAGCACATTCAAGGAAGAATTAGAAGAGTTGTC
19359166 AAGATCAGCACATTCAAGGAAGAATTAGAAGAGTTGTC
1 AAGATCAGCACATTCAAGGAAGAATTAGAAGAGTTGTC
19359204 AAG
1 AAG
19359207 TGATGATGAT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.42, C:0.13, G:0.25, T:0.20
Consensus pattern (38 bp):
AAGATCAGCACATTCAAGGAAGAATTAGAAGAGTTGTC
Found at i:19368546 original size:104 final size:104
Alignment explanation
Indices: 19368433--19368641 Score: 355
Period size: 104 Copynumber: 2.0 Consensus size: 104
19368423 GTTTGTGTGG
* * *
19368433 TTTATATGTTTTATGATGGTGTTATGTGTTGAACAATGTTTATATGGGTTATATGGCGTATGTTA
1 TTTATATGTTTTATGATGGTGTTATATGCTGAACAATGTTTATATGGGTTATATGGCCTATGTTA
*
19368498 TGCTGAGTTTTTATAGTTTTATGTTGAACTTATACTGAA
66 TGCTGAGTTTTTATAGTTTTATATTGAACTTATACTGAA
* *
19368537 TTTATATGTTTTATGATGGTGTTATATGCTGAACAATGTTTATATGGGTTATGTGGCCTATGTTG
1 TTTATATGTTTTATGATGGTGTTATATGCTGAACAATGTTTATATGGGTTATATGGCCTATGTTA
*
19368602 TGCTGAGTTTTTATATTTTTATATTGAACTTATACTGAA
66 TGCTGAGTTTTTATAGTTTTATATTGAACTTATACTGAA
19368641 T
1 T
19368642 GGTCGAACAT
Statistics
Matches: 98, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
104 98 1.00
ACGTcount: A:0.24, C:0.06, G:0.21, T:0.49
Consensus pattern (104 bp):
TTTATATGTTTTATGATGGTGTTATATGCTGAACAATGTTTATATGGGTTATATGGCCTATGTTA
TGCTGAGTTTTTATAGTTTTATATTGAACTTATACTGAA
Found at i:19370415 original size:10 final size:10
Alignment explanation
Indices: 19370382--19370415 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
19370372 TAATGAATGC
19370382 TTGATGATAA
1 TTGATGATAA
* *
19370392 TTGATAATAC
1 TTGATGATAA
19370402 TTGATGATAA
1 TTGATGATAA
19370412 TTGA
1 TTGA
19370416 GAATTATGCT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.38, C:0.03, G:0.18, T:0.41
Consensus pattern (10 bp):
TTGATGATAA
Found at i:19370912 original size:19 final size:19
Alignment explanation
Indices: 19370877--19370918 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
19370867 AAGTTTTCTT
*
19370877 AATTAGTATCTAACTTTAA
1 AATTAGCATCTAACTTTAA
*
19370896 AATTAGCAT-TAAGCTTTAT
1 AATTAGCATCTAA-CTTTAA
19370915 AATT
1 AATT
19370919 GTCTCTTCTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 3 0.15
19 17 0.85
ACGTcount: A:0.40, C:0.10, G:0.07, T:0.43
Consensus pattern (19 bp):
AATTAGCATCTAACTTTAA
Found at i:19380632 original size:135 final size:134
Alignment explanation
Indices: 19380389--19380658 Score: 522
Period size: 135 Copynumber: 2.0 Consensus size: 134
19380379 CATCCTGCTA
19380389 AACTAATAAAATCAACATAAAATTCATGAAAATTCTCAAAGTACAATGTGTCAAATTTCACGTAC
1 AACTAATAAAATCAACATAAAATTCATGAAAATTCTCAAAGTACAATGTGTCAAATTTCACGTAC
19380454 ATTACAACCATAAATCATTGTCCATCAATTTGCTATAACACACACATTTACATATGTATATATAT
66 ATTACAACCATAAATCATTGTCCATCAATTTGCTATAACACACACATTTACATATGTATATATAT
19380519 ATAT
131 ATAT
19380523 ANACTAATAAAATCAACATAAAATTCATGAAAATTCTCAAAGTACAATGTGTCAAATTTCACGTA
1 A-ACTAATAAAATCAACATAAAATTCATGAAAATTCTCAAAGTACAATGTGTCAAATTTCACGTA
*
19380588 CATTACAACCATAAATCATTGTCCATCAATTTGCTATAACACACACATTTACATATGTGTATATA
65 CATTACAACCATAAATCATTGTCCATCAATTTGCTATAACACACACATTTACATATGTATATATA
19380653 TATAT
130 TATAT
19380658 A
1 A
19380659 CCCATCATCA
Statistics
Matches: 134, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
134 1 0.01
135 133 0.99
ACGTcount: A:0.44, C:0.18, G:0.06, T:0.32
Consensus pattern (134 bp):
AACTAATAAAATCAACATAAAATTCATGAAAATTCTCAAAGTACAATGTGTCAAATTTCACGTAC
ATTACAACCATAAATCATTGTCCATCAATTTGCTATAACACACACATTTACATATGTATATATAT
ATAT
Found at i:19380706 original size:20 final size:20
Alignment explanation
Indices: 19380663--19380725 Score: 92
Period size: 20 Copynumber: 3.2 Consensus size: 20
19380653 TATATACCCA
* *
19380663 TCATCATCATC-TCACCAAC
1 TCATCATCATCATCACTAGC
*
19380682 CCATCATCATCATCACTAGC
1 TCATCATCATCATCACTAGC
19380702 TCATCATCATCATCACTAGC
1 TCATCATCATCATCACTAGC
19380722 TCAT
1 TCAT
19380726 GTGCACTCCC
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
19 10 0.26
20 29 0.74
ACGTcount: A:0.30, C:0.38, G:0.03, T:0.29
Consensus pattern (20 bp):
TCATCATCATCATCACTAGC
Found at i:19380775 original size:43 final size:43
Alignment explanation
Indices: 19380728--19380918 Score: 251
Period size: 43 Copynumber: 4.4 Consensus size: 43
19380718 TAGCTCATGT
*
19380728 GCACTCCCTACTCGCACATGGCTGGGTCATCACCGGGTTATGC
1 GCACTCCCTACTCGCACATGACTGGGTCATCACCGGGTTATGC
* * * *
19380771 GCACTCCGTACTCGTACATAACCGGGTCATCACCGGGTTATGC
1 GCACTCCCTACTCGCACATGACTGGGTCATCACCGGGTTATGC
* *
19380814 ACACTCCCTACTCGCACATGGCTGGGTCATCACCGGGTTATGC
1 GCACTCCCTACTCGCACATGACTGGGTCATCACCGGGTTATGC
* * *
19380857 GCACTCCCTACTCGCACAT-AATCGGGTCATC-CTCGGCTTAGGC
1 GCACTCCCTACTCGCACATGACT-GGGTCATCAC-CGGGTTATGC
*
19380900 GCACTCCCTACTCTCACAT
1 GCACTCCCTACTCGCACAT
19380919 AGTCGAGTCA
Statistics
Matches: 129, Mismatches: 17, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
42 2 0.02
43 127 0.98
ACGTcount: A:0.19, C:0.36, G:0.21, T:0.24
Consensus pattern (43 bp):
GCACTCCCTACTCGCACATGACTGGGTCATCACCGGGTTATGC
Found at i:19380819 original size:86 final size:86
Alignment explanation
Indices: 19380729--19380918 Score: 301
Period size: 86 Copynumber: 2.2 Consensus size: 86
19380719 AGCTCATGTG
* *
19380729 CACTCCCTACTCGCACATGGCTGGGTCATCACCGGGTTATGCGCACTCCGTACTCGTACATAACC
1 CACTCCCTACTCGCACATGGCTGGGTCATCACCGGGTTATGCGCACTCCCTACTCGCACATAACC
* *
19380794 GGGTCATCAC-CGGGTTATGCA
66 GGGTCATC-CTCGGCTTAGGCA
*
19380815 CACTCCCTACTCGCACATGGCTGGGTCATCACCGGGTTATGCGCACTCCCTACTCGCACATAATC
1 CACTCCCTACTCGCACATGGCTGGGTCATCACCGGGTTATGCGCACTCCCTACTCGCACATAACC
*
19380880 GGGTCATCCTCGGCTTAGGCG
66 GGGTCATCCTCGGCTTAGGCA
*
19380901 CACTCCCTACTCTCACAT
1 CACTCCCTACTCGCACAT
19380919 AGTCGAGTCA
Statistics
Matches: 96, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
85 1 0.01
86 95 0.99
ACGTcount: A:0.19, C:0.36, G:0.21, T:0.24
Consensus pattern (86 bp):
CACTCCCTACTCGCACATGGCTGGGTCATCACCGGGTTATGCGCACTCCCTACTCGCACATAACC
GGGTCATCCTCGGCTTAGGCA
Found at i:19388877 original size:2 final size:2
Alignment explanation
Indices: 19388835--19388867 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
19388825 NNNNNNNNNN
19388835 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
19388868 CACGTATATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:19393971 original size:22 final size:22
Alignment explanation
Indices: 19393943--19393989 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
19393933 GAAAATCACC
*
19393943 CAGTGCTGCAGTGCTACTTCTT
1 CAGTGCTGCAATGCTACTTCTT
*
19393965 CAGTGCTGCAATGTTACTTCTT
1 CAGTGCTGCAATGCTACTTCTT
19393987 CAG
1 CAG
19393990 CGTTGTGGCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.17, C:0.26, G:0.21, T:0.36
Consensus pattern (22 bp):
CAGTGCTGCAATGCTACTTCTT
Found at i:19397668 original size:25 final size:24
Alignment explanation
Indices: 19397640--19397712 Score: 74
Period size: 25 Copynumber: 2.9 Consensus size: 24
19397630 TTTCTTTTTA
19397640 ATTGGGCCATGCCCATTCTTCCCTT
1 ATTGGGCCATGCCCATT-TTCCCTT
* * *
19397665 ATTGGACCATGTCCATTTTTCTTGCTT
1 ATTGGGCCATGCCCA-TTTTC--CCTT
*
19397692 GTTGGGCCATGCCCATTTTCC
1 ATTGGGCCATGCCCATTTTCC
19397713 TTTCTTGTTA
Statistics
Matches: 38, Mismatches: 7, Indels: 7
0.73 0.13 0.13
Matches are distributed among these distances:
25 16 0.42
26 7 0.18
27 15 0.39
ACGTcount: A:0.12, C:0.30, G:0.18, T:0.40
Consensus pattern (24 bp):
ATTGGGCCATGCCCATTTTCCCTT
Found at i:19397701 original size:27 final size:27
Alignment explanation
Indices: 19397641--19397721 Score: 85
Period size: 27 Copynumber: 3.1 Consensus size: 27
19397631 TTCTTTTTAA
* *
19397641 TTGGGCCATGCCCATTCTTC--CCTTA
1 TTGGGCCATGCCCATTTTTCTTCCTTG
* * *
19397666 TTGGACCATGTCCATTTTTCTTGCTTG
1 TTGGGCCATGCCCATTTTTCTTCCTTG
* *
19397693 TTGGGCCATGCCCATTTTCCTTTCTTG
1 TTGGGCCATGCCCATTTTTCTTCCTTG
19397720 TT
1 TT
19397722 ATTTTCTTTT
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
25 17 0.38
27 28 0.62
ACGTcount: A:0.10, C:0.28, G:0.17, T:0.44
Consensus pattern (27 bp):
TTGGGCCATGCCCATTTTTCTTCCTTG
Found at i:19397731 original size:5 final size:5
Alignment explanation
Indices: 19397707--19397768 Score: 74
Period size: 5 Copynumber: 12.6 Consensus size: 5
19397697 GCCATGCCCA
* * *
19397707 TTTTC CTTTC TTGTTA TTTTC TTTTC CTTTC TTTTC TTTTC TTTTC TTTTC
1 TTTTC TTTTC TT-TTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC
19397758 -TTTC -TTTC TTT
1 TTTTC TTTTC TTT
19397769 CTTCCACCGT
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
4 8 0.16
5 37 0.76
6 4 0.08
ACGTcount: A:0.02, C:0.21, G:0.02, T:0.76
Consensus pattern (5 bp):
TTTTC
Found at i:19398136 original size:22 final size:22
Alignment explanation
Indices: 19398110--19398151 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
19398100 CAATAAAGCT
**
19398110 ACACTTTTTGGCCTCCAAAATG
1 ACACTTTTCAGCCTCCAAAATG
19398132 ACACTTTTCAGCCTCCAAAA
1 ACACTTTTCAGCCTCCAAAA
19398152 CCAGCCCTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.31, C:0.31, G:0.10, T:0.29
Consensus pattern (22 bp):
ACACTTTTCAGCCTCCAAAATG
Found at i:19398360 original size:2 final size:2
Alignment explanation
Indices: 19398353--19398388 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
19398343 CTTGGTCAAT
19398353 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
19398389 ATTATTATTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:19400701 original size:22 final size:23
Alignment explanation
Indices: 19400652--19400701 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 23
19400642 ATAAATATCA
*
19400652 TCTTCCAACAGCTTCTTCTCATT
1 TCTTCTAACAGCTTCTTCTCATT
*
19400675 T-TTCTAACAGCTTCTTCT-TTT
1 TCTTCTAACAGCTTCTTCTCATT
19400696 TCTTCT
1 TCTTCT
19400702 TCCTCCCATC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 3 0.12
22 20 0.83
23 1 0.04
ACGTcount: A:0.14, C:0.30, G:0.04, T:0.52
Consensus pattern (23 bp):
TCTTCTAACAGCTTCTTCTCATT
Found at i:19403358 original size:171 final size:169
Alignment explanation
Indices: 19403068--19403652 Score: 669
Period size: 171 Copynumber: 3.4 Consensus size: 169
19403058 TTCCGAGTCA
* * * * * * * *
19403068 TGACAATAAATGAACTTTTGTTCTTAA-TGAATGG-TTTTCACTTCACGTTTCTCATGGTAAACA
1 TGACTATAAATGAACTTTTCTTCTCAACT-AATGGCTTTT-GCTTCATGTTTTTCA-GGCAAATA
* **
19403131 TTCAATTGTAATCTATTTTAACCAAAAATGCAAAAAAAATTAACTTAAAATCAATTATGAGATTA
63 TTCAATTATAATCTATTTTAACCAAAAA-GGTAAAAAAATTAACTTAAAATCAATTATGAGATTA
19403196 TAAAACTATTTAAAGCGAGTAATAAGGCTTTTGAAGGCAT-AGG
127 TAAAACTATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATGA-G
* ** *
19403239 TGACGATAAATGATGTTTTCTTCTCAACTAATGGCTTTTGCTTCATGTTTTTCACGGCACATATT
1 TGACTATAAATGAACTTTTCTTCTCAACTAATGGCTTTTGCTTCATGTTTTTCA-GGCAAATATT
* *
19403304 CAATTATGATCTGTTTTAACCAAAAAGGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATA
65 CAATTATAATCTATTTTAACCAAAAAGGTAAAAAAATT-AACTTAAAATCAATTATGAGATTATA
** * **
19403369 AAA-TCATTTGTAGCAAGTAATAAGGCTTTTCTAGGCATGAG
129 AAACT-ATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATGAG
* * * * * *
19403410 TGACTATAAATGAACTTTTGTTCCTC-A-TGAATGGTTTTTGCTTCACGTTTCTCGAGGTAAACA
1 TGACTATAAATGAACTTTTCTT-CTCAACT-AATGGCTTTTGCTTCATGTTTTTC-AGGCAAATA
* * *
19403473 TTCAATTATAATCTATTTTAGCCAAAAATGTAAAAAAAATAAACTTAAAATCAATTATGAGATTA
63 TTCAATTATAATCTATTTTAACCAAAAAGGT-AAAAAAATTAACTTAAAATCAATTATGAGATTA
* * *
19403538 TAAAACTATTTAAAGCGAGTAACAAGGCCTTAGAAGGCATGAG
127 TAAAACTATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATGAG
* * **
19403581 TGACTATAAATGAACTTTTCTTCTCAACAAATGGCTTTTGCTTCATGCTTTTCAATCCAAATATT
1 TGACTATAAATGAACTTTTCTTCTCAACTAATGGCTTTTGCTTCATGTTTTTC-AGGCAAATATT
19403646 CAATTAT
65 CAATTAT
19403653 CANNNNNNNN
Statistics
Matches: 346, Mismatches: 56, Indels: 24
0.81 0.13 0.06
Matches are distributed among these distances:
170 15 0.04
171 312 0.90
172 19 0.05
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.35
Consensus pattern (169 bp):
TGACTATAAATGAACTTTTCTTCTCAACTAATGGCTTTTGCTTCATGTTTTTCAGGCAAATATTC
AATTATAATCTATTTTAACCAAAAAGGTAAAAAAATTAACTTAAAATCAATTATGAGATTATAAA
ACTATTTAAAGCGAGTAATAAGGCTTTTGAAGGCATGAG
Found at i:19406858 original size:171 final size:171
Alignment explanation
Indices: 19405975--19407264 Score: 1485
Period size: 171 Copynumber: 7.5 Consensus size: 171
19405965 NNNNNNNNAT
* * *
19405975 GTAAGAAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAACGAGTAATAAGGCT
1 GTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCT
* * * * * * * * *
19406040 TTCAAAGGAATGAGTGACTATAAATGGACGTTTCCTGTCAATCG-ATGGCGTTCGCTTCATGCTT
66 TTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCAAT-GAATGGCTTTCGCTTCACGTTT
* * * * * * ** *
19406104 CCCAAGGCAAACATTTAATTATAACCT-TTCTTAATGAAAAAT
130 CTCAAGGTAAATATTCAATTATGATCTGTT-TTAACCAAAAAG
* ** *
19406146 GTAAAAAAATACAACTTAAAAATCAATTATGAGATTATAATGCAATTTAAAGCGAGTAATAAGGC
1 GTAAAAAAATTCAACTT-AAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC
* * * * *
19406211 TTTCGAAGGCATGAATGACTATAAACGAAGTTTTTTTCTCAATGAATGGCTTTCGTTTCACGTTT
65 TTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCAATGAATGGCTTTCGCTTCACGTTT
* *
19406276 CTCGAGGTAAATATTCAATAATGATCT-TTTTAACCAAAAAG
130 CTCAAGGTAAATATTCAATTATGATCTGTTTTAACCAAAAAG
* * * *
19406317 GTAAAAAAATTCAACTTAAAATCAATTTTGAGATTATAAAACCATTTAAAGCGTGTAATATGTCT
1 GTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCT
* * * * * * * *
19406382 TTCGAATGTATGAGTGACTATAAACGAACTTTTCTTCTCGATGGATGGCTTTAGCATCACATTTC
66 TTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCAATGAATGGCTTTCGCTTCACGTTTC
* *
19406447 TCAAGGCAAATATTCAATTATGATATGTTTTAACCAAAAAG
131 TCAAGGTAAATATTCAATTATGATCTGTTTTAACCAAAAAG
* **
19406488 GTAAAAAAAATT-ATACTTAAAATCAATAATGAGATTATAAAACCATTTAAATTGAGTAATAAGG
1 GT-AAAAAAATTCA-ACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGG
* ** * * * *
19406552 CTTTTGAAGGCATGAGTGACTATAAATGGATTTTTTTTTGTCAATGGATGGCTTTCGCTTCATGT
64 CTTTCGAAGGCATGAGTGACTATAAAT-GAACTTTTCTTCTCAATGAATGGCTTTCGCTTCACGT
* *
19406617 TTCTCAAGGTAAATATTCAATTATAATCTATTTTAACCAAAAAG
128 TTCTCAAGGTAAATATTCAATTATGATCTGTTTTAACCAAAAAG
* * * * * *
19406661 GTTAAAAAATTCAACGTAAAATCAATTATGATATTATAAAACCATTTAAAACAAGTAATAAGTCA
1 GTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC-
* * *
19406726 TTT-GAAGGCATGAGTAACTATAAATGAACTTTTCTTCTCAACGAATGGCTTTCGCTTCATGGTT
65 TTTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCAATGAATGGCTTTCGCTTCA-CGTT
** * **
19406790 T-TCAAGCCAAATATTCAATTATCATCTGTTTTAACTGAAAAG
129 TCTCAAGGTAAATATTCAATTATGATCTGTTTTAACCAAAAAG
* * * *
19406832 GTAAAAAATTTCAATTTAAAATCAATTATGAGGTTATAAAACCATTTGAAGCGAGTAATAAGGCT
1 GTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCT
* * * * *
19406897 TTCAAAGCCATGGGTGACTATAAATGAACTTTTCTTCTCAATGAATAGCTTTCGCTTCAAGTTTC
66 TTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCAATGAATGGCTTTCGCTTCACGTTTC
* * **
19406962 CCAAGGTAAATATTCAATTATGATTTGTTTTAACCAAAATC
131 TCAAGGTAAATATTCAATTATGATCTGTTTTAACCAAAAAG
* * * * *
19407003 ATAAAAAAATTCAACTTAAAATCAATCATGAAATTACAAAACCATTTAAAGCGAGTAATCAGGCT
1 GTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCT
* * ** **
19407068 TTCAAAGGCATTAGTGACTATAAATGAACTTTTCTTCTCAATGAATATCTTTTTCTTCACGTTTC
66 TTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCAATGAATGGCTTTCGCTTCACGTTTC
* * ** ** *
19407133 TCAAGGTAAACATTCAACTACAATCTGTTTTAATTAAAAAT
131 TCAAGGTAAATATTCAATTATGATCTGTTTTAACCAAAAAG
** *
19407174 GTAAATAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAAAGAGTAACAAGGC
1 GTAAA-AAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC
* *
19407239 TTTAGAAGGCATGGGTGACTATAAAT
65 TTTCGAAGGCATGAGTGACTATAAAT
19407265 AAAGTTTGCT
Statistics
Matches: 942, Mismatches: 165, Indels: 23
0.83 0.15 0.02
Matches are distributed among these distances:
170 124 0.13
171 406 0.43
172 338 0.36
173 74 0.08
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (171 bp):
GTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCT
TTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTCTCAATGAATGGCTTTCGCTTCACGTTTC
TCAAGGTAAATATTCAATTATGATCTGTTTTAACCAAAAAG
Found at i:19407011 original size:514 final size:512
Alignment explanation
Indices: 19405980--19407264 Score: 1612
Period size: 514 Copynumber: 2.5 Consensus size: 512
19405970 NNNATGTAAG
19405980 AAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAACGAGTAATAAGGCTTTCAA
1 AAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAACGAGTAATAAGGCTTTCAA
* * * * * * *
19406045 AGGAATGAGTGACTATAAATGGACGTTTCCTGTCAATCGATGGCGTTCGCTTCATGCTTCCCAAG
66 AGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCAAG
* * * * *
19406110 GCAAACATTTAATTATAACCTTTCTTAATGAAAAATGTAAAAAAATACAACTTAAAAATCAATTA
131 GTAAACATTCAATTATAATCTTT-TTAATCAAAAATGTAAAAAAATTCAACTT-AAAATCAATTA
** * * * * * *
19406175 TGAGATTATAATGCAATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAATGACTATAAACGAA
194 TGAGATTATAAAACCATTTAAAACAAGTAATAAGGCTTTAGAAGGCATGAGTGACTATAAATGAA
* * * * * ** *
19406240 GTTTTTTTCTCAATGAATGGCTTTCGTTTCACGTTTCTCGAGGTAAATATTCAATAATGATCTTT
259 CTTTTCTTCTCAACGAATGGCTTTCGCTTCACGTTTCTCAAGCCAAATATTCAATAATCATCTTT
*
19406305 TTAACCAAAAAGGTAAAAAAATTCAACTTAAAATCAATTTTGAGATTATAAAACCATTTAAAGCG
324 TTAACCAAAAAGGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCG
* * * * * * * *
19406370 TGTAATATGTCTTTCGAATGTATGAGTGACTATAAACGAACTTTTCTTCTCGATGGATGGCTTTA
389 AGTAATAAGGCTTTCGAAAGCATGAGTGACTATAAACGAACTTTTCTTCTCAATGAATAGCTTTA
* **
19406435 GCATCACATTTCTCAAGGCAAATATTCAATTATGATATGTTTTAACCAAAAAGGTAAAA
454 GCATCACATTTCCCAAGGCAAATATTCAATTATGATATGTTTTAACCAAAAACATAAAA
** **
19406494 AAAATT-ATACTTAAAATCAATAATGAGATTATAAAACCATTTAAATTGAGTAATAAGGCTTTTG
1 AAAATTCA-ACTTAAAATCAATAATGAGATTATAAAACCATTTAAAACGAGTAATAAGGCTTTCA
* *
19406558 AAGGCATGAGTGACTATAAATGGATTTTTTTTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCA
65 AAGGCATGAGTGACTATAAATGGA-CTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCA
* * * * *
19406623 AGGTAAATATTCAATTATAATCTATTTTAACCAAAAAGGTTAAAAAATTCAACGTAAAATCAATT
129 AGGTAAACATTCAATTATAATCT-TTTTAATCAAAAATGTAAAAAAATTCAACTTAAAATCAATT
* * *
19406688 ATGATATTATAAAACCATTTAAAACAAGTAATAAGTCATTT-GAAGGCATGAGTAACTATAAATG
193 ATGAGATTATAAAACCATTTAAAACAAGTAATAAGGC-TTTAGAAGGCATGAGTGACTATAAATG
* *
19406752 AACTTTTCTTCTCAACGAATGGCTTTCGCTTCATGGTTT-TCAAGCCAAATATTCAATTATCATC
257 AACTTTTCTTCTCAACGAATGGCTTTCGCTTCA-CGTTTCTCAAGCCAAATATTCAATAATCATC
** * * * *
19406816 TGTTTTAACTGAAAAGGTAAAAAATTTCAATTTAAAATCAATTATGAGGTTATAAAACCATTTGA
321 T-TTTTAACCAAAAAGGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAA
* *
19406881 AGCGAGTAATAAGGCTTTC-AAAGCCATGGGTGACTATAAATGAACTTTTCTTCTCAATGAATAG
385 AGCGAGTAATAAGGCTTTCGAAAG-CATGAGTGACTATAAACGAACTTTTCTTCTCAATGAATAG
* * * * *
19406945 CTTTCGCTTCA-AGTTTCCCAAGGTAAATATTCAATTATGATTTGTTTTAACCAAAATCAT-AAA
449 CTTTAGCATCACA-TTTCCCAAGGCAAATATTCAATTATGATATGTTTTAACCAAAAACATAAAA
* * * * *
19407008 AAAATTCAACTTAAAATCAATCATGAAATTACAAAACCATTTAAAGCGAGTAATCAGGCTTTCAA
1 AAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAACGAGTAATAAGGCTTTCAA
* * * * ** ** *
19407073 AGGCATTAGTGACTATAAATGAACTTTTCTTCTCAATGAATATCTTTTTCTTCACGTTTCTCAAG
66 AGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCAAG
* * *
19407138 GTAAACATTCAACTACAATCTGTTTTAATTAAAAATGTAAATAAAATTCAACTTAAAATCAATTA
131 GTAAACATTCAATTATAATCT-TTTTAATCAAAAATGTAAA-AAAATTCAACTTAAAATCAATTA
* *
19407203 TGAGATTATAAAACCATTTAAAA-AGAGTAACAAGGCTTTAGAAGGCATGGGTGACTATAAAT
194 TGAGATTATAAAACCATTTAAAACA-AGTAATAAGGCTTTAGAAGGCATGAGTGACTATAAAT
19407265 AAAGTTTGCT
Statistics
Matches: 658, Mismatches: 101, Indels: 24
0.84 0.13 0.03
Matches are distributed among these distances:
513 71 0.11
514 347 0.53
515 238 0.36
516 2 0.00
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (512 bp):
AAAATTCAACTTAAAATCAATAATGAGATTATAAAACCATTTAAAACGAGTAATAAGGCTTTCAA
AGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTCAAG
GTAAACATTCAATTATAATCTTTTTAATCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATG
AGATTATAAAACCATTTAAAACAAGTAATAAGGCTTTAGAAGGCATGAGTGACTATAAATGAACT
TTTCTTCTCAACGAATGGCTTTCGCTTCACGTTTCTCAAGCCAAATATTCAATAATCATCTTTTT
AACCAAAAAGGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAG
TAATAAGGCTTTCGAAAGCATGAGTGACTATAAACGAACTTTTCTTCTCAATGAATAGCTTTAGC
ATCACATTTCCCAAGGCAAATATTCAATTATGATATGTTTTAACCAAAAACATAAAA
Found at i:19407838 original size:28 final size:29
Alignment explanation
Indices: 19407797--19407856 Score: 68
Period size: 30 Copynumber: 2.1 Consensus size: 29
19407787 GTCTATGGGC
* *
19407797 AATTTTTCAGTTTT-TGGGGTAAAAATGT
1 AATTTTTCACTTTTAGGGGGTAAAAATGT
* *
19407825 AATTTTTTACTTTTACGGGGGTAAAAGTGT
1 AATTTTTCACTTTTA-GGGGGTAAAAATGT
19407855 AA
1 AA
19407857 ATTTCAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
28 12 0.46
30 14 0.54
ACGTcount: A:0.30, C:0.05, G:0.22, T:0.43
Consensus pattern (29 bp):
AATTTTTCACTTTTAGGGGGTAAAAATGT
Found at i:19419204 original size:170 final size:171
Alignment explanation
Indices: 19418920--19419747 Score: 1044
Period size: 172 Copynumber: 4.8 Consensus size: 171
19418910 GGTCGTGACA
** * * * *
19418920 GAATGGCTTTCGCTTCACATTTCCCAAGGCAAATATTCAATTATGATCTGTTTTAACAAAAAAGG
1 GAATGGCTTTCGCTTCATGTTTCCTAAGGTAAATATTCAATTATAATCTGTTTTAACCAAAAAGG
** * * *
19418985 -AAAAAATTTAAACTTAAAATCAATTATGAGATTATAAAACAATTTAAAGCGAGTAATAAGGCTT
66 TAAAAAAAATCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTT
*
19419049 TCGAAGGCATGAGTGACTATAAATGGACTATTT-TTTTCAAT
131 TCGAAGGCATGAGTGACTATAAATGAACT-TTTCTTTTCAAT
* * * * ** *
19419090 GGATGGCTTTTGCTTCATGTTTCCTGAGGTAAACATTCAATTATAATCTGTTTTAACCACGAATG
1 GAATGGCTTTCGCTTCATGTTTCCTAAGGTAAATATTCAATTATAATCTGTTTTAACCAAAAAGG
* **
19419155 TAAAAAAAATCAACTTAAAAT-ATTTATGA-ATTTATAAAACCATTTAAAGCAAGTAATAAGGCT
66 TAAAAAAAATCAACTTAAAATCAATTATGAGA-TTATAAAACCATTTAAAGTGAGTAATAAGGCT
* * * *
19419218 TTCGAAGGTATGAGCGACTATAAATGAACTTCTCTTCTCAAT
130 TTCGAAGGCATGAGTGACTATAAATGAACTTTTCTTTTCAAT
* * * * *
19419260 GAATGGCTTTCACTTCATGTTTTCTAAGGAAAATATTCAATTATGATCTTTTTTAACCAAAAAGG
1 GAATGGCTTTCGCTTCATGTTTCCTAAGGTAAATATTCAATTATAATCTGTTTTAACCAAAAAGG
* *
19419325 TAAAAAAATTCAACTTAAAATCAATTTTGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTT
66 TAAAAAAAATCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTT
* *
19419390 TCGAAGGAATGAGTGACTATAAATGAACTTTTCCTCTT-AAT
131 TCGAAGGCATGAGTGACTATAAATGAACTTTT-CTTTTCAAT
* * * * * * * * *
19419431 TAATGGTTTTTGGTTCACGTTTCTTATGGTAAACATTCAATTATAATCTGTTTTGACCAAAAATG
1 GAATGGCTTTCGCTTCATGTTTCCTAAGGTAAATATTCAATTATAATCTGTTTTAACCAAAAA-G
** *
19419496 CAAAAAAAAATCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTCATAAGGCT
65 GTAAAAAAAATCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCT
* **
19419561 TTCGAAGGCATGAATGACTATAAAT-AGACTTTTCTTGCCAAT
130 TTCGAAGGCATGAGTGACTATAAATGA-ACTTTTCTTTTCAAT
19419603 CG-ATGGCTTTCGCTTCACAT-TTTCC-AAGGTAAATATTCAATTATAATCTGTTTTAACCAAAA
1 -GAATGGCTTTCGCTT--CATGTTTCCTAAGGTAAATATTCAATTATAATCTGTTTTAACCAAAA
*
19419665 AGGTAAAAAAAATTCAACTTAAAATCAATTATGAGAATATAAAACCATTTAAAGTGAGTAATAAG
63 AGGTAAAAAAAA-TCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAG
*
19419730 GCTTTCGAAAGCATGAGT
127 GCTTTCGAAGGCATGAGT
19419748 NNNNNNNNNN
Statistics
Matches: 560, Mismatches: 85, Indels: 24
0.84 0.13 0.04
Matches are distributed among these distances:
169 3 0.01
170 196 0.35
171 147 0.26
172 208 0.37
173 4 0.01
174 2 0.00
ACGTcount: A:0.39, C:0.13, G:0.14, T:0.33
Consensus pattern (171 bp):
GAATGGCTTTCGCTTCATGTTTCCTAAGGTAAATATTCAATTATAATCTGTTTTAACCAAAAAGG
TAAAAAAAATCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGCTT
TCGAAGGCATGAGTGACTATAAATGAACTTTTCTTTTCAAT
Found at i:19428209 original size:172 final size:172
Alignment explanation
Indices: 19427923--19428915 Score: 1318
Period size: 172 Copynumber: 5.8 Consensus size: 172
19427913 NNNNNNNNNN
* *
19427923 TGTTTTAACAAAAAATGTAAAAAAAATTCAACTTAAAATCAATTATGAGATTATATAATCATTTA
1 TGTTTTAACCAAAAATGTAAAAAAAATTCAACTTAAAATCAATTATGAGATTATATAACCATTTA
19427988 AAGGGAGAAATAAAGCTTTTGAAGGCATAAGTGACTATAAAAGAAGTTTTCTTCTCAATGAATGG
66 AAGGGAGAAATAAAGCTTTTGAAGGCATAAGTGACTATAAAAGAAGTTTTCTTCTCAATGAATGG
* * * * **
19428053 TTTTTGCTTCATGTTTCCTGAGATAAACATAAAATTATAATC
131 CTTTTGCTTCACGTTTCCTAAGGTAAACATTCAATTATAATC
* *
19428095 TGTTTTAACCGAAAATGTAAAAAAAATTCAACTTAGAATCAATTATGAGATTATATAACCATTTA
1 TGTTTTAACCAAAAATGTAAAAAAAATTCAACTTAAAATCAATTATGAGATTATATAACCATTTA
*
19428160 AAGGGAGAAACAAAGCTTTTGAAGGCATAAGTGACTATAAAAGAAGTTTTCTTCTCAATGAATGG
66 AAGGGAGAAATAAAGCTTTTGAAGGCATAAGTGACTATAAAAGAAGTTTTCTTCTCAATGAATGG
* *
19428225 TTTTTCCTTCACGTTTTCC-AAGGTAAACATTCAATTATAATC
131 CTTTTGCTTCACG-TTTCCTAAGGTAAACATTCAATTATAATC
* *
19428267 TGTTTTAACCAAATATGTAAAAAAAATTCAACTTAAAATAAATTATGAGATTATATAACCATTTA
1 TGTTTTAACCAAAAATGTAAAAAAAATTCAACTTAAAATCAATTATGAGATTATATAACCATTTA
*
19428332 AAGGGAGAAATAAAGCTTTTGAAGGCATAAGTGACTATAAAAAAAGTTTTCTTCTCAATGAATGG
66 AAGGGAGAAATAAAGCTTTTGAAGGCATAAGTGACTATAAAAGAAGTTTTCTTCTCAATGAATGG
*
19428397 CTTTTGCTTCACGTTTCCTAAGGTAAACATTCAATTATAATA
131 CTTTTGCTTCACGTTTCCTAAGGTAAACATTCAATTATAATC
**
19428439 TGTTTTAAGAAAAAATGTAAAAAAAAATTCAACTTAAAATCAATTATGAGATTATATAACCATTT
1 TGTTTTAACCAAAAATGT-AAAAAAAATTCAACTTAAAATCAATTATGAGATTATATAACCATTT
* * * * * * *
19428504 AAAGCGAGTATTAAAGCTTTTGATGGCATGAA-TGACTATAAATGGACTTTTCTTAC-CAATCG-
65 AAAGGGAGAAATAAAGCTTTTGAAGGCAT-AAGTGACTATAAAAGAAGTTTTCTT-CTCAAT-GA
* * * * * * * *
19428566 ATGGCTTTCGCTTCATGTTTCTTATGGCAAATATTCAATTATGATA
127 ATGGCTTTTGCTTCACGTTTCCTAAGGTAAACATTCAATTATAATC
* * *
19428612 TGTTTTAACCAAAAAGGT-AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCAGTTA
1 TGTTTTAACCAAAAATGTAAAAAAAATTCAACTTAAAATCAATTATGAGATTATATAACCATTTA
* * * * * * * * *
19428676 AAGTGAGTAA-CAAGCCCTTTGAAGGCATGAGTGACTATAAATGAACTTTTCTTCCCAATGGATG
66 AAGGGAGAAATAAAG-CTTTTGAAGGCATAAGTGACTATAAAAGAAGTTTTCTTCTCAATGAATG
* *
19428740 GCTTTTGCTTCACGTTTCCTAATGTAAACATTCAATTATAAAC
130 GCTTTTGCTTCACGTTTCCTAAGGTAAACATTCAATTATAATC
* * * *
19428783 TGTTATAACCAAAAATGTAAAAAAAA-TCAACTTAAAATTACTTATGAGATTATAAAACCATTTA
1 TGTTTTAACCAAAAATGTAAAAAAAATTCAACTTAAAATCAATTATGAGATTATATAACCATTTA
* ** * * * * * * *
19428847 ATGCAAGTAATAAGGCTTTTGAAGGCATGAGTGACTGTAAATGTAGTTTTCTTCTTAATGAATGG
66 AAGGGAGAAATAAAGCTTTTGAAGGCATAAGTGACTATAAAAGAAGTTTTCTTCTCAATGAATGG
19428912 -TTTT
131 CTTTT
19428916 CACTTCATGT
Statistics
Matches: 731, Mismatches: 78, Indels: 26
0.88 0.09 0.03
Matches are distributed among these distances:
170 10 0.01
171 230 0.31
172 336 0.46
173 151 0.21
174 4 0.01
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.34
Consensus pattern (172 bp):
TGTTTTAACCAAAAATGTAAAAAAAATTCAACTTAAAATCAATTATGAGATTATATAACCATTTA
AAGGGAGAAATAAAGCTTTTGAAGGCATAAGTGACTATAAAAGAAGTTTTCTTCTCAATGAATGG
CTTTTGCTTCACGTTTCCTAAGGTAAACATTCAATTATAATC
Found at i:19433034 original size:171 final size:170
Alignment explanation
Indices: 19431933--19436951 Score: 5640
Period size: 171 Copynumber: 29.3 Consensus size: 170
19431923 CAAGGCAAAT
* * * *
19431933 ATTCAATTGTGATATGTTTTAACCAAAAACGTAAAAAAATTCAACTTAAAATCAATTATGAGATT
1 ATTCAATTATAATCTGTTTTAACCAAAAAGGTAAAAAAATTCAACTTAAAATCAATTATGAGATT
* *
19431998 ACAAAACCATTTAAAGTGAGT-ATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCT
66 ATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCT
* * * *
19432062 TCTCAATGGATGGCTTTCGCTTCATGTTT-TTTGAGGAAAAC
131 TC-CAATGAATGGCTTTCGCTTCACGTTTCTCT-AGGTAAAC
* * * * * *
19432103 ATTCAATTATAATCTGTGTTGACCAAAAATGTAAAAAAAAAATCAACTTAAAATCAATTATAAGT
1 ATTCAATTATAATCTGTTTTAACCAAAAAGGT--AAAAAAATTCAACTTAAAATCAATTATGAGA
* *
19432168 TTATAAAACCATTTAAAGTGAGTAATAAGGCTTGT-AAAGGCATGAGTGACTATAAATGAAGTTT
64 TTATAAAACCATTTAAAGTGAGTAATAAGGCTT-TCGAAGGCATGAGTGACTATAAATGAACTTT
* * *
19432232 TCTACTCAATGAATGGCTTTTGCTTCACGTTTCT-TGAGGTAAAT
128 TCTTC-CAATGAATGGCTTTCGCTTCACGTTTCTCT-AGGTAAAC
* *
19432276 ATTCAATTATAATCTGTTTTAACCAAGAAGGTAAAAAAATTCAACATAAAAT-AATTATGAGATT
1 ATTCAATTATAATCTGTTTTAACCAAAAAGGTAAAAAAATTCAACTTAAAATCAATTATGAGATT
** * *
19432340 ATAAAACCATTTAAAAAGAGTAATAAGGCTTTCGAAGGTATAAGTGACTATAAATGAACTTTTCT
66 ATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCT
* * *
19432405 TCCTAATGGATGGCTTTCGCTTCACATTT-TCCAAGGTAAAC
131 TCC-AATGAATGGCTTTCGCTTCACGTTTCT-CTAGGTAAAC
* * * * *
19432446 ATTCAATTA-ATATTTGTTTTAACCCAAAATGTAAAAAAAAT-ACCTTAAAATCAATTATGAGAT
1 ATTCAATTATA-ATCTGTTTTAACCAAAAAGGTAAAAAAATTCAACTTAAAATCAATTATGAGAT
* * * * * * *
19432509 TGTAAAACTAGTTAAAGCGGGTAATAAGGCTTCCGGAGGCATGAGTGACTATAAATGAACTTTTC
65 TATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTC
* * * * *
19432574 TTTTCAATGAAGGGCTTTCACTTCACGTTTCT-TGAGGCAAAT
130 -TTCCAATGAATGGCTTTCGCTTCACGTTTCTCT-AGGTAAAC
*
19432616 ATTCAATTATGAA-CTGTTTTAACCAAAAAGGTAAAAAAATTCAACTTTAAATCAATTATGAGAT
1 ATTCAATTAT-AATCTGTTTTAACCAAAAAGGTAAAAAAATTCAACTTAAAATCAATTATGAGAT
* * *
19432680 TATAAAACCATTTAAAGCGAGTAATAAGGCTTTCAAAGGCATGAGTG-C-AGTAAATGGACTTTT
65 TATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGACTA-TAAATGAACTTTT
* * * * * ** *
19432743 CTTGCAATGGATAGTTTTTGCTTCATATTTCTCAAGGTAAAC
129 CTTCCAATGAATGGCTTTCGCTTCACGTTTCTCTAGGTAAAC
* * *
19432785 ATTCAATTATAATCTGTTTTAACCAATAATGTAAAAAAAAT-AATCTTAAAATCAATTATGAGAT
1 ATTCAATTATAATCTGTTTTAACCAAAAAGGTAAAAAAATTCAA-CTTAAAATCAATTATGAGAT
* * * * * *
19432849 TATAAAATCATTTAAAGAGAGTAATAAGGCTTTCGAACGCATGAGTGACAATAAATGGAGTTTTC
65 TATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTC
* * * *
19432914 TTGCAAATGCATGGC-TTCTACTTCACGTTTCTCTAGGTAAAT
130 TT-CCAATGAATGGCTTTC-GCTTCACGTTTCTCTAGGTAAAC
* * * *
19432956 ATTTAATTATAATCTATTTTAACCAAAAA-GTCAAAAAAATTGAACTTAATATCAATTATGAGAT
1 ATTCAATTATAATCTGTTTTAACCAAAAAGGT-AAAAAAATTCAACTTAAAATCAATTATGAGAT
* * * *
19433020 TACAAAACCATTTAAGGTGAGTAATAAGGCTTTCAAAGGCATAAGTGACTATAAAT-AATCTTTT
65 TATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAA-CTTTT
* * * *
19433084 CATCCCAATGGATGGCTTTCGCTTCATGTTTCTCGAGGTAAAC
129 C-TTCCAATGAATGGCTTTCGCTTCACGTTTCTCTAGGTAAAC
* * * *
19433127 ATTCAATTATAATC-GATTTTAACCAAAAATGTAAAAAAATTCAACTTGAAATCGATTATGAGAA
1 ATTCAATTATAATCTG-TTTTAACCAAAAAGGTAAAAAAATTCAACTTAAAATCAATTATGAGAT
* ** *
19433191 TGTAAAACCATTTAAAGCAACTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTC
65 TATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTC
* * *
19433256 TTCCCAACGGATGGCTTTCGCTTCACGTTT-TCAGAGGTAAA-
130 TT-CCAATGAATGGCTTTCGCTTCACGTTTCTC-TAGGTAAAC
* * * * * *
19433297 TTTCACTTATAATCTTTTTTAACCAAAAAGGCAAAAAAATTAAACTTAAAATCAATTATGAGACT
1 ATTCAATTATAATCTGTTTTAACCAAAAAGGTAAAAAAATTCAACTTAAAATCAATTATGAGATT
* * * * * ** * *
19433362 AGAAAATCATTTAAAGTGAGTAATAAGGCTTTCAAAAGCATGAGTGACAATAGGTGGAGTTTTCT
66 ATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCT
** * *
19433427 TGTAAATGCATAGG-TTTCGCTTCTCGTTTC-CTAAGGTAAAC
131 T-CCAATGAAT-GGCTTTCGCTTCACGTTTCTCT-AGGTAAAC
* * * * *
19433468 ATTCAATTATGATCTGTTTTAACCAAAAATGTAAAACAAAATCAACTTAAAATCGATTATGGGAT
1 ATTCAATTATAATCTGTTTTAACCAAAAAGGTAAAA-AAATTCAACTTAAAATCAATTATGAGAT
* *
19433533 TATAAAACCATTCAAAGTGAGTAATAAGGCTTTCGAAGGTATGAGTGACTATAAATGAACTTTTC
65 TATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTC
** * *
19433598 TTCTCAACAAATGGATTTCGCTTCACGTTTCTCGAGGTAAAC
130 TTC-CAATGAATGGCTTTCGCTTCACGTTTCTCTAGGTAAAC
* * ** * * *
19433640 ATTTAATTATAATCTATTTTAATAAAAAATGTAAAAAAATTCAATTTAAAATCAATTATGAAATT
1 ATTCAATTATAATCTGTTTTAACCAAAAAGGTAAAAAAATTCAACTTAAAATCAATTATGAGATT
*
19433705 ATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGTCATGAGTGACTATAAAT-AGACTTTTC
66 ATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGA-ACTTTTC
* * * *
19433769 TTCTCAATGGATGGCTTTCGCTTCACGTTTC-CTGACG-CAAT
130 TTC-CAATGAATGGCTTTCGCTTCACGTTTCTCT-AGGTAAAC
* * *
19433810 AGTCAATTATAATCTGTTTTAACCAAAAAGGTAAAAAAATTCAACCTAAAATTAATTATGAGATT
1 ATTCAATTATAATCTGTTTTAACCAAAAAGGTAAAAAAATTCAACTTAAAATCAATTATGAGATT
** ** * * * * * *
19433875 ATAAAACCA-TTAAAACGAGTAATAAGTTTTTTGAAGGCATGAGTGATTGTGAATGTACTTTTTT
66 ATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCT
* * * * * * *
19433939 TGTCAA-CAGATGGCTTTCTCTTCACGTTTCCCAAGGGAAGC
131 T-CCAATGA-ATGGCTTTCGCTTCACGTTTCTCTAGGTAAAC
*
19433980 ATTCAATTATAATCTGTTTT-ACCAAAAAAGGTTAAAAAATTCAACTTAAAATCAATTATGAGAT
1 ATTCAATTATAATCTGTTTTAACC-AAAAAGGTAAAAAAATTCAACTTAAAATCAATTATGAGAT
* * * *
19434044 TATAAAACCATTTAAAGCGAGTAA-ACAGGCTTTTGAAGCCATGAGTGACTATAAATGGACTTTT
65 TATAAAACCATTTAAAGTGAGTAATA-AGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTT
* * * * *
19434108 TTTGTCAATGGACGGCTTTCGCTTCATGTTTC-CTAAGGTAAAC
129 CTT-CCAATGAATGGCTTTCGCTTCACGTTTCTCT-AGGTAAAC
* * * *
19434151 ATTCAATTATAATATGTTTTAACAAAAAATGTAAAAGAAATTCAACTTAACATCAATTATGAGAT
1 ATTCAATTATAATCTGTTTTAACCAAAAAGGTAAAA-AAATTCAACTTAAAATCAATTATGAGAT
* ** * *
19434216 TATAAGACCATTTAAAGCAAGTAATAAGGCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTC
65 TATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTC
* * * * *
19434281 TTGTCAATGGAGGGCTTTTGCTTCACGTTTCT-TGAGATAAAC
130 TT-CCAATGAATGGCTTTCGCTTCACGTTTCTCT-AGGTAAAC
* * * *
19434323 ATTCAATTGTAATCTATTTTAACCAAAAATGTAAAAAAAAAATTGAACTTAAAATCAATTATGAG
1 ATTCAATTATAATCTGTTTTAACCAAAAAGGT---AAAAAAATTCAACTTAAAATCAATTATGAG
** * * * *
19434388 ATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTCGTAGTCATGGGTGACTATAAATGGACTTT
63 ATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTT
* * * * *
19434453 TCTTCTCAATGGATGGCTTTCGCTTCACGTTTCCCAACGTAAAT
128 TCTTC-CAATGAATGGCTTTCGCTTCACGTTTCTCTAGGTAAAC
* * *
19434497 AGTCAATTATAATCTGTTTTAACCAAAAAGGTAAAAAAATTCAACTTAAAATCGATTATGAGATA
1 ATTCAATTATAATCTGTTTTAACCAAAAAGGTAAAAAAATTCAACTTAAAATCAATTATGAGATT
* * * *
19434562 ATAAAACCATTTAAAGTGAGTAACATA-TCTTTCGAAGGTATAAGTGACTATAAATGAACTTTTC
66 ATAAAACCATTTAAAGTGAGTAATA-AGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTC
* * *
19434626 TTCTTAATGAATGGCTTTCGCTTCATGTTTCTCGAGGTAAAC
130 TTC-CAATGAATGGCTTTCGCTTCACGTTTCTCTAGGTAAAC
* *
19434668 ATTCAATTATAATCTGTTTTGACCAAAAATGCG-GAAAAAA-TCAACTTAAAATCAATTATGAGA
1 ATTCAATTATAATCTGTTTTAACCAAAAA-G-GTAAAAAAATTCAACTTAAAATCAATTATGAGA
*
19434731 TTATAAAACTATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTT
64 TTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTT
* * * * * * *
19434796 CTTCTCAATGGATGGCTTTAGCATCACATTTCTCAAGGCAAAT
129 CTTC-CAATGAATGGCTTTCGCTTCACGTTTCTCTAGGTAAAC
* * * * *
19434839 ATTCAATTATGATATGCTTTAACCAAAAAAGGTAAAAACATTCAACTTAAAATCAATAATGAGAT
1 ATTCAATTATAATCTGTTTTAACC-AAAAAGGTAAAAAAATTCAACTTAAAATCAATTATGAGAT
* * * *
19434904 TATGAAATCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCGA-GGGTGACTATAAATGAACTTTT
65 TATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGC-ATGAGTGACTATAAATGAACTTTT
* * * * * * * * * *
19434968 TTTGTCAATAAATGGCTTTTGTTTCATGTTTCCCAAGGCAAAT
129 CTT-CCAATGAATGGCTTTCGCTTCACGTTTCTCTAGGTAAAC
* * * * * *
19435011 ATTCAATTATAGTCTATTTTAACCAAAAAGGTCAAAAAATTCAACATAAAGTCAATTATAAGATT
1 ATTCAATTATAATCTGTTTTAACCAAAAAGGTAAAAAAATTCAACTTAAAATCAATTATGAGATT
* * *
19435076 ATAAAACCATTTAAAGCT-AATAATAAGGCTTTTGAAGGCATGAGTGACTATAAATGAATTTTTC
66 ATAAAACCATTTAAAG-TGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTC
* * *** *
19435140 TTCCCAATGGATGGCTTTCACTTCACACGTCT-TGAGGTAAAT
130 TT-CCAATGAATGGCTTTCGCTTCACGTTTCTCT-AGGTAAAC
* *
19435182 ATTCAATTATAATCTGTTTTAACCAAAAAGGTAAAAAAATTCAAATTAAAATCAATTATGAAATT
1 ATTCAATTATAATCTGTTTTAACCAAAAAGGTAAAAAAATTCAACTTAAAATCAATTATGAGATT
* * *
19435247 ATAAAACCATTTAACGCGAGTAATAAGGCTTTTGAAGGCATGAGTGACTATAAATGAACTTTTCT
66 ATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCT
** * * ***
19435312 TCTCAATGAATATCTTTCAC-TCATGTTTCAGAAGGTAAAC
131 TC-CAATGAATGGCTTTCGCTTCACGTTTCTCTAGGTAAAC
* *
19435352 ATTTAATTATAATCTGTTTTAACCAAAAAGGCAAAAAAAATTCAACTTAAAATCAATTATGATG-
1 ATTCAATTATAATCTGTTTTAACCAAAAAGG-TAAAAAAATTCAACTTAAAATCAATTATGA-GA
* * * *
19435416 TTATAAAACCATATAAAGCGAGTAATAAGGCTTTTGAAGGCATAAGTGACTATAAAT-AGACTTT
64 TTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGA-ACTTT
* ** *
19435480 TCTTACCAATGGATATCTTTCGATTCACGTTTCT-TAAGGTAAAC
128 TCTT-CCAATGAATGGCTTTCGCTTCACGTTTCTCT-AGGTAAAC
* ** * *
19435524 ATTCAATTATAATCTGTCTTAACCAAAAATATAAAAAAAATCAA-TGTAAAATCAATTATGAGTT
1 ATTCAATTATAATCTGTTTTAACCAAAAAGGTAAAAAAATTCAACT-TAAAATCAATTATGAGAT
*** *
19435588 TATAAAACCATTTAAACCAAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAAGTTTTC
65 TATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTC
* *
19435653 TTCTCAACGAATGGCTTTCGCTTCACGTTTC-CTCAGGTAAAT
130 TTC-CAATGAATGGCTTTCGCTTCACGTTTCTCT-AGGTAAAC
* * * * * * *
19435695 TTTCAATTGTGATATGTTTTAACCAAATAGGTAAAAAAATT-AACTGAAAATTAATTATGAGATT
1 ATTCAATTATAATCTGTTTTAACCAAAAAGGTAAAAAAATTCAACTTAAAATCAATTATGAGATT
* * * *
19435759 CTAAAACCATTTAAAGTGAGTAATAAGGCTTT-TAATGGCATGAGCGACTATAAATGAAGTTTTC
66 ATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAA-GGCATGAGTGACTATAAATGAACTTTTC
** * * * * * *
19435823 TTCTCAACAAATTGCTTTCGCTTCATGTTTCCCAAGGCAAAT
130 TTC-CAATGAATGGCTTTCGCTTCACGTTTCTCTAGGTAAAC
* * *
19435865 ATTAAATTATGATCTGTTTTAACCAAAAAGGTAAAACAATTCAACTTAAAATCAATTATGAGATT
1 ATTCAATTATAATCTGTTTTAACCAAAAAGGTAAAAAAATTCAACTTAAAATCAATTATGAGATT
* * * ** *
19435930 ACAAAACCATTTAAAGTGACTAATAAGGCATTCGAAACCATGAGTGACTATAAATGTACTTTTCT
66 ATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCT
* * * * *
19435995 TCTTAATGAAAGGCTTTCGCTTTATGTTTCACCTAGGTAAAC
131 TC-CAATGAATGGCTTTCGCTTCACGTTTC-TCTAGGTAAAC
* * *
19436037 ATTCAATTATAATATGTTTTAAGCAAAAATGTAAAAAAAATTCAACTTAAAATCAATTATGAGAT
1 ATTCAATTATAATCTGTTTTAACCAAAAAGGT-AAAAAAATTCAACTTAAAATCAATTATGAGAT
* * *
19436102 TATAAAACCTTTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTAACTATAAATGGACTTTTC
65 TATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTC
* * * *
19436167 TTGCCAATGAATGGCTTTCACTTCAAGTTTCTCGAGGTAGAC
130 TT-CCAATGAATGGCTTTCGCTTCACGTTTCTCTAGGTAAAC
* * * *
19436209 ATTCAATTATAATATGTTTTAACCAAACATGTAAAACAAA-TCAACTAAAAATCAATTATG-GAA
1 ATTCAATTATAATCTGTTTTAACCAAAAAGGTAAAA-AAATTCAACTTAAAATCAATTATGAG-A
* * * * * *
19436272 TTATAAAACCATTCAAAGTGAGTAATAAGGCTTTTGAAAGCATGAATGACTATTAATGAAAGTTT
64 TTATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATG-AACTTT
* * *
19436337 TCTTCTCAATGAATGGCTTTCGTTTCACGTTTCTCGAGGTAAAT
128 TCTTC-CAATGAATGGCTTTCGCTTCACGTTTCTCTAGGTAAAC
* * * *
19436381 ATTCAATTATGATATGTTTTAATCAAAAAGGTAAAAAAATTCAACTTAAAATCAATTATAAGATT
1 ATTCAATTATAATCTGTTTTAACCAAAAAGGTAAAAAAATTCAACTTAAAATCAATTATGAGATT
* *
19436446 ATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGGATGAGTGACTATAAATGAAGTTTTCT
66 ATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCT
* *
19436511 TCTCAATGAATGGCTTTCGCTTCACGTTTCT-TGAGGCAAAT
131 TC-CAATGAATGGCTTTCGCTTCACGTTTCTCT-AGGTAAAC
19436552 ATTCAATTATAATCTGTTTCT-ACCAAAAAGGTAAAAAAA-TCAACTTAAAATCAATTATGAGAT
1 ATTCAATTATAATCTGTTT-TAACCAAAAAGGTAAAAAAATTCAACTTAAAATCAATTATGAGAT
** * *
19436615 TATAAAACCATTTAAAGCAAGTAATAAGGCTTTTGAAGCCATGAGTGACTATAAATGAACTTTTC
65 TATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTC
* * * *
19436680 TTCTCAATGGATGGCTTTCGCTTCACATTTCCCAAGGTAAAC
130 TTC-CAATGAATGGCTTTCGCTTCACGTTTCTCTAGGTAAAC
* * * *
19436722 ATTCAATTATAATATGTTTTAACCAAAAATGTAAAAGAAA-TCAACTTAAAATAAATTATGGGAT
1 ATTCAATTATAATCTGTTTTAACCAAAAAGGTAAAA-AAATTCAACTTAAAATCAATTATGAGAT
* *
19436786 TATAAAACCATTCAAAGTTG-GTAATAAGGCTTTCAAAGGCATGAGTGACTATAAATGAACTTTT
65 TATAAAACCATTTAAAG-TGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTT
* * **
19436850 CTTCTCAATGAATGGCTTTCACTTCACGTTTCTCGAGAAAAAC
129 CTTC-CAATGAATGGCTTTCGCTTCACGTTTCTCTAGGTAAAC
* * *
19436893 ATTCAATTGTGATTTGTTTTAACCAAAAAGGTAAAAAAATTCAACTTAAAATCAATTAT
1 ATTCAATTATAATCTGTTTTAACCAAAAAGGTAAAAAAATTCAACTTAAAATCAATTAT
19436952 AATCTTCAAA
Statistics
Matches: 4129, Mismatches: 608, Indels: 223
0.83 0.12 0.04
Matches are distributed among these distances:
168 4 0.00
169 213 0.05
170 940 0.23
171 1843 0.45
172 760 0.18
173 216 0.05
174 149 0.04
175 4 0.00
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (170 bp):
ATTCAATTATAATCTGTTTTAACCAAAAAGGTAAAAAAATTCAACTTAAAATCAATTATGAGATT
ATAAAACCATTTAAAGTGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGAACTTTTCT
TCCAATGAATGGCTTTCGCTTCACGTTTCTCTAGGTAAAC
Found at i:19437628 original size:171 final size:171
Alignment explanation
Indices: 19436948--19437783 Score: 797
Period size: 171 Copynumber: 4.9 Consensus size: 171
19436938 TTAAAATCAA
* * * * * *
19436948 TTATAATCTTCA-AAATGATTTTAAAT-TGAAATATTTTTCATTTCTAGCTAAAAGATATTATAA
1 TTATAATCTT-ATAAATGATTTTAAATATG-AATTTTTTTCATTTTTAGTTAAAACAAATCATAA
** * * * * * *
19437011 TAGGATGTTTGCGTTGTAA-AAA-GTGAAGAAAAAGTCATCCATTAACAAGAAAAGTCCATTTAT
64 TTTGATGTTTAC-AT-CAAGAAACATGAAGTAAAAGTCATCCATTGACAAGAAAAGTCCATTTAT
* * ** *
19437074 ATTCACTCATACCTTTAAAAGCCTAGTTACTCACTTTAAATGGTT
127 AGTCACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGTT
* * **
19437119 TTATAATCTTATAAATGATTTT-AA-ATCAATTTTTTTCATTTTTCA-TTAAATCAAATTGTAAT
1 TTATAATCTTATAAATGATTTTAAATATGAATTTTTTTCATTTTT-AGTTAAAACAAATCATAAT
* * * * *
19437181 TTGATGTTTACATCGAGAAACATGTAGTGAAAGGT-ATCTATTGACAAGAAAGGTCCATTTAT-G
65 TTGATGTTTACATCAAGAAACATGAAGT-AAAAGTCATCCATTGACAAGAAAAGTCCATTTATAG
* * * * *
19437244 TCACTCATGCCTTCAAAAG-ATAGCTACTTGCTTTGAATGGTT
129 TCACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGTT
* * * * * *
19437286 TTATAGTCTTATAAAAGATTTTAAATCA-GAATTTTTTTCATTTTTGGTTAAAAGAGATCACAAT
1 TTATAATCTTATAAATGATTTTAAAT-ATGAATTTTTTTCATTTTTAGTTAAAACAAATCATAAT
* * * * * * * *
19437350 TTG-TTTTTGCTTCAAGAAGCGTGAAGCAAAAGAT-ATCTATTGATAAGAAAAGTCCATTTATAG
65 TTGATGTTTACATCAAGAAACATGAAGTAAAAG-TCATCCATTGACAAGAAAAGTCCATTTATAG
* * *
19437413 TCACTCATGCCTTTGGAAGCCTAGTTACTTGCTTTAAATGGTT
129 TCACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGTT
* * * * * *
19437456 TTAGAATCTTATAAATGATTTCAAATATAAATTTTTTCCATTTCTAGTTAAAACAAATGATAATT
1 TTATAATCTTATAAATGATTTTAAATATGAATTTTTTTCATTTTTAGTTAAAACAAATCATAATT
* * * *
19437521 TGATGTTTGCATCAGGAAACGTGAAGTGAAAGTCATCCATTGACAAGAAAAGTCCATTTATAGTC
66 TGATGTTTACATCAAGAAACATGAAGTAAAAGTCATCCATTGACAAGAAAAGTCCATTTATAGTC
* * * *
19437586 ACTCATCCCTTCGCAAGCCTTGTTACTCG-TTTCAAGTGGTT
131 ACTCATGCCTTCGAAAGCCTAGTTACTCGCTTT-AAATGGTT
* * *
19437627 TTATAA-CTTTATAAATGATTTTAAAT-TGAATTATTTTTCATTTTTGGTTGAAACAGATCATAA
1 TTATAATC-TTATAAATGATTTTAAATATGAATT-TTTTTCATTTTTAGTTAAAACAAATCATAA
* * * * *
19437690 TTTGATGTTCACACCAACAAACATGAAGTAAAAGCCATCCATT-AGAAGAAAAGTCCATTTATAG
64 TTTGATGTTTACATCAAGAAACATGAAGTAAAAGTCATCCATTGACAAGAAAAGTCCATTTATAG
*
19437754 TCACTCATGCCTACGAAAGCCTAGTTACTC
129 TCACTCATGCCTTCGAAAGCCTAGTTACTC
19437784 TGTCACGACC
Statistics
Matches: 542, Mismatches: 104, Indels: 39
0.79 0.15 0.06
Matches are distributed among these distances:
167 43 0.08
168 65 0.12
169 110 0.20
170 140 0.26
171 184 0.34
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.37
Consensus pattern (171 bp):
TTATAATCTTATAAATGATTTTAAATATGAATTTTTTTCATTTTTAGTTAAAACAAATCATAATT
TGATGTTTACATCAAGAAACATGAAGTAAAAGTCATCCATTGACAAGAAAAGTCCATTTATAGTC
ACTCATGCCTTCGAAAGCCTAGTTACTCGCTTTAAATGGTT
Found at i:19437748 original size:341 final size:337
Alignment explanation
Indices: 19437034--19437783 Score: 886
Period size: 341 Copynumber: 2.2 Consensus size: 337
19437024 TTGTAAAAAG
* * * *
19437034 TGAAGAAAAAGTCATCCATTAACAAGAAAAGTCCATTTATATTCACTCATACCTTTAAAAGCCTA
1 TGAAGAAAAAGACATCCATTAACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTA
* * * * *
19437099 GTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAATTTTTTTCATTTTTCA
66 GTTACTCACTTTAAATGGTTTTAGAATCTTATAAATGATTTAAAATAAATTTTTTCCATTTCTCA
* * *
19437164 TTAAATCAAATTGTAATTTGATGTTTACATCGAGAAACATGTAGTGAAAGGTATCTATTGACAAG
131 TTAAAACAAATTGTAATTTGATGTTTACATCGAGAAACATGAAGTGAAAGGTATCCATTGACAAG
* * * * *
19437229 AAAGGTCCATTTATGTCACTCATGCCTTCAAAAGATAGCTACTTGCTTTGAATGGTTTTATAGTC
196 AAAAGTCCATTTATGTCACTCATCCCTTCAAAAGATAGCTACTCGCTTTCAATGGTTTTATACTC
* * **
19437294 TTATAAAAGATTTTAAATCAGAATTTTTTTCATTTTTGGTTAAAAGAGATCACAATTTGTTTTTG
261 TTATAAAAGATTTTAAATCAGAATTTTTTTCATTTTTGGTTAAAACAGATCACAATTTGTGTTCA
** * * *
19437359 CTTCAAGAAGCG
326 CACCAACAAACA
* * * * * *
19437371 TGAAGCAAAAGATATCTATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGGAAGCCTA
1 TGAAGAAAAAGACATCCATTAACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTA
**
19437436 GTTACTTGCTTTAAATGGTTTTAGAATCTTATAAATGATTTCAAATATAAATTTTTTCCATTTCT
66 GTTACTCACTTTAAATGGTTTTAGAATCTTATAAATGATTT-AAA-ATAAATTTTTTCCATTTCT
* *
19437501 -AGTTAAAACAAA-TGATAATTTGATGTTTGCATC-AGGAAACGTGAAGTGAAA-GTCATCCATT
129 CA-TTAAAACAAATTG-TAATTTGATGTTTACATCGA-GAAACATGAAGTGAAAGGT-ATCCATT
** * * *
19437562 GACAAGAAAAGTCCATTTATAGTCACTCATCCCTTCGCAAGCCTTGTTACTCG-TTTCAAGTGGT
190 GACAAGAAAAGTCCATTTAT-GTCACTCATCCCTTCAAAAG-ATAGCTACTCGCTTTCAA-TGGT
* * * *
19437626 TTTATAACT-TTATAAATGATTTTAAAT-TGAATTATTTTTCATTTTTGGTTGAAACAGATCATA
252 TTTAT-ACTCTTATAAAAGATTTTAAATCAGAATT-TTTTTCATTTTTGGTTAAAACAGATCACA
19437689 ATTTGATGTTCACACCAACAAACA
315 ATTTG-TGTTCACACCAACAAACA
* * * **
19437713 TGAAGTAAAAGCCATCCATT-AGAAGAAAAGTCCATTTATAGTCACTCATGCCTACGAAAGCCTA
1 TGAAGAAAAAGACATCCATTAACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTA
19437777 GTTACTC
66 GTTACTC
19437784 TGTCACGACC
Statistics
Matches: 347, Mismatches: 54, Indels: 20
0.82 0.13 0.05
Matches are distributed among these distances:
337 93 0.27
338 8 0.02
339 81 0.23
340 27 0.08
341 110 0.32
342 28 0.08
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.37
Consensus pattern (337 bp):
TGAAGAAAAAGACATCCATTAACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTA
GTTACTCACTTTAAATGGTTTTAGAATCTTATAAATGATTTAAAATAAATTTTTTCCATTTCTCA
TTAAAACAAATTGTAATTTGATGTTTACATCGAGAAACATGAAGTGAAAGGTATCCATTGACAAG
AAAAGTCCATTTATGTCACTCATCCCTTCAAAAGATAGCTACTCGCTTTCAATGGTTTTATACTC
TTATAAAAGATTTTAAATCAGAATTTTTTTCATTTTTGGTTAAAACAGATCACAATTTGTGTTCA
CACCAACAAACA
Found at i:19439953 original size:171 final size:171
Alignment explanation
Indices: 19439565--19439982 Score: 490
Period size: 171 Copynumber: 2.5 Consensus size: 171
19439555 CACCATGTCG
* * *
19439565 TTTTAGGTGGTTTTATAACTTTATAAATCATTTTAAATTG-A-TTTTTTTCATTT-TGATTTAAA
1 TTTTAAGTGGTTTTATAACTTTACAAATCATTTTAACTTGAATTTTTTTTCATTTCTGA-TTAAA
* * * * *
19439627 ACAGAACATGATTGAATGTTCACATTGAGAAACGTGAAACGAAAGGCATCCATTGACAAGAAAAG
65 ACAGATCATAATTGAATGTTCACATTGAGAAACATGAAACGAAAGCCATCCATTCACAAGAAAAG
**
19439692 ACCATTTATAGTCACTCATGCCATTGAAGGCCTTGTTTCTCA
130 ACCATTTATAGTCACTCATGCCATTGAAGGCCTTGTCACTCA
* * * *
19439734 CTTTAAATGGTTTTATAACTTTATC--ATGATTTTGAAC-T-AATTTTTTTTTTCATTTCTGGTT
1 TTTTAAGTGGTTTTATAACTTTA-CAAATCATTTT-AACTTGAA--TTTTTTTTCATTTCTGATT
** ** * * *
19439795 AAAGTAGATCATAATTGAATGTTTGCTTTGGGAAACATGAAGCGAAAGCCATCCATTCACAAGAA
62 AAAACAGATCATAATTGAATGTTCACATTGAGAAACATGAAACGAAAGCCATCCATTCACAAGAA
* * * *
19439860 AAGTCTATTTATAGTCACTCATGCCTTTGAATGCCTTGTCACTCA
127 AAGACCATTTATAGTCACTCATGCCATTGAAGGCCTTGTCACTCA
* * *
19439905 TTTTAAGTGGTTTTATAACTTGACAAATCAATTTAACTTGAATTTTTTTACATTTCTGATTAAAA
1 TTTTAAGTGGTTTTATAACTTTACAAATCATTTTAACTTGAATTTTTTTTCATTTCTGATTAAAA
19439970 CAGATCATAATTG
66 CAGATCATAATTG
19439983 TAATACCCTG
Statistics
Matches: 204, Mismatches: 34, Indels: 20
0.79 0.13 0.08
Matches are distributed among these distances:
168 9 0.04
169 22 0.11
170 1 0.00
171 161 0.79
172 9 0.04
173 2 0.01
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.39
Consensus pattern (171 bp):
TTTTAAGTGGTTTTATAACTTTACAAATCATTTTAACTTGAATTTTTTTTCATTTCTGATTAAAA
CAGATCATAATTGAATGTTCACATTGAGAAACATGAAACGAAAGCCATCCATTCACAAGAAAAGA
CCATTTATAGTCACTCATGCCATTGAAGGCCTTGTCACTCA
Found at i:19440646 original size:11 final size:11
Alignment explanation
Indices: 19440630--19440655 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
19440620 TGTTTTGAAG
19440630 AAATAAAAATA
1 AAATAAAAATA
19440641 AAATAAAAATA
1 AAATAAAAATA
19440652 AAAT
1 AAAT
19440656 GGATGATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (11 bp):
AAATAAAAATA
Found at i:19441413 original size:34 final size:34
Alignment explanation
Indices: 19441293--19441410 Score: 137
Period size: 34 Copynumber: 3.5 Consensus size: 34
19441283 TTAGCTGCTG
* * *
19441293 AAAATTTGAGCTATTTACTACCAATTTGTGCAGA
1 AAAATTGGAGCTATTTACTGCCAATTTGTGCAAA
* * *
19441327 AAAATTAGAGCTATTTATTGCCAATTTGTCCAAA
1 AAAATTGGAGCTATTTACTGCCAATTTGTGCAAA
* * * *
19441361 AAAGTTGGAGCTGTTTGCTGCCAAATTGTGCAAA
1 AAAATTGGAGCTATTTACTGCCAATTTGTGCAAA
*
19441395 AAAATTGGGGCTATTT
1 AAAATTGGAGCTATTT
19441411 GCTAGTAGTT
Statistics
Matches: 69, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
34 69 1.00
ACGTcount: A:0.34, C:0.14, G:0.19, T:0.34
Consensus pattern (34 bp):
AAAATTGGAGCTATTTACTGCCAATTTGTGCAAA
Found at i:19441611 original size:23 final size:22
Alignment explanation
Indices: 19441585--19441640 Score: 69
Period size: 23 Copynumber: 2.5 Consensus size: 22
19441575 GTGACGGGCT
*
19441585 GAAAAGAAAAAAG-AAGAAATATG
1 GAAAAGAAAAAAGAAAGAAA-A-A
19441608 GAAAAGAGAAAAAGAAAGAAAAA
1 GAAAAGA-AAAAAGAAAGAAAAA
19441631 GAAAAGAAAA
1 GAAAAGAAAA
19441641 GAAATAGAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
22 3 0.10
23 14 0.47
24 7 0.23
25 6 0.20
ACGTcount: A:0.75, C:0.00, G:0.21, T:0.04
Consensus pattern (22 bp):
GAAAAGAAAAAAGAAAGAAAAA
Found at i:19441633 original size:16 final size:17
Alignment explanation
Indices: 19441608--19441651 Score: 56
Period size: 16 Copynumber: 2.6 Consensus size: 17
19441598 AAGAAATATG
19441608 GAAAAGAGAAAAAG-AAA
1 GAAAA-AGAAAAAGAAAA
19441625 GAAAAAG-AAAAGAAAA
1 GAAAAAGAAAAAGAAAA
*
19441641 GAAATAGAAAA
1 GAAAAAGAAAA
19441652 TAAATGGGCA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
15 5 0.21
16 11 0.46
17 8 0.33
ACGTcount: A:0.77, C:0.00, G:0.20, T:0.02
Consensus pattern (17 bp):
GAAAAAGAAAAAGAAAA
Found at i:19441672 original size:25 final size:25
Alignment explanation
Indices: 19441643--19441755 Score: 163
Period size: 25 Copynumber: 4.5 Consensus size: 25
19441633 AAAGAAAAGA
*
19441643 AATAGAAAATAAATGGGCATGACCA
1 AATAGAAAATAAATGGGCATGACCC
*
19441668 AATAGAAAATACATGGGCATGACCC
1 AATAGAAAATAAATGGGCATGACCC
*
19441693 AATAGAAAATAAGTGGGCATGACCC
1 AATAGAAAATAAATGGGCATGACCC
* * *
19441718 AATAAAAAATAAGTGGGCATGGCCC
1 AATAGAAAATAAATGGGCATGACCC
*
19441743 AATAGGAAATAAA
1 AATAGAAAATAAA
19441756 AATAAATGGG
Statistics
Matches: 79, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 79 1.00
ACGTcount: A:0.49, C:0.14, G:0.21, T:0.16
Consensus pattern (25 bp):
AATAGAAAATAAATGGGCATGACCC
Found at i:19441760 original size:31 final size:32
Alignment explanation
Indices: 19441722--19441783 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
19441712 TGACCCAATA
* *
19441722 AAAAATAAGTGGGCATGGCCC-AATAGGAAAT
1 AAAAATAAATGGGCATAGCCCAAATAGGAAAT
*
19441753 AAAAATAAATGGGCTTAGCCCAAATAGGAAA
1 AAAAATAAATGGGCATAGCCCAAATAGGAAA
19441784 ATTGGAGAAG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 18 0.67
32 9 0.33
ACGTcount: A:0.48, C:0.13, G:0.23, T:0.16
Consensus pattern (32 bp):
AAAAATAAATGGGCATAGCCCAAATAGGAAAT
Found at i:19444248 original size:171 final size:169
Alignment explanation
Indices: 19443963--19445082 Score: 1154
Period size: 171 Copynumber: 6.6 Consensus size: 169
19443953 GAGAAATATA
* * * * * *
19443963 AAGTGAAAGCCATCCATTGACAAGAAAGGTCCATTTATAGTCACCCATGCATTCGAAGGCCTTGT
1 AAGTGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATACCTTCGAAAGCCTTGT
*
19444028 TACTTACTTTAAGTGGTTTTATAACTTTATAAATGATTTTAAATTGAATTTTCTTTCATTTCTAG
66 TACTCACTTTAAGTGGTTTTATAACTTTATAAATGATTTTAAATTGAATTTT-TTTCATTTCTAG
* * * **
19444093 CTAAAACATATCACAATTCAATGTTCGCATCAAGAAACGTG
130 TTAAAACAGATCATAATTCAATGTTCGCAT-GGGAAACGTG
* * * *
19444134 AAGTGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTAATATCTTTGAAAGCCTAGT
1 AAGTGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATACCTTCGAAAGCCTTGT
* * * *
19444199 TACTCGCTTTAAGTTGTTTTATAACTTTATAAATGATTTTAAATTGAATTTTTTTATATTTCTGG
66 TACTCACTTTAAGTGGTTTTATAACTTTATAAATGATTTTAAATTGAATTTTTTT-CATTTCTAG
* *
19444264 TTAAAACAGATCATAA-TCGAATGTTCGCATCGAGAAATGTG
130 TTAAAACAGATCATAATTC-AATGTTCGCAT-GGGAAACGTG
* * * * * *
19444305 AAGTGAAAGCTATTCATTGACAAGCAAAGTCTATTTATAGTCCCTCATACCTTTGAAGGCCTTGT
1 AAGTGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATACCTTCGAAAGCCTTGT
* * * * * * ** * *
19444370 TACTCATTTTAAATGGTTTT-TTAGTCCTATAAATGATTTTAGATCAAAAGTTTTTTCATTT-TT
66 TACTCACTTTAAGTGGTTTTATAACT-TTATAAATGATTTTAAAT-TGAATTTTTTTCATTTCTA
* * * * * * * *
19444433 GTTTAAAGCAAATCGTAGTTGAATGGTCACATGGGTAAACATG
129 G-TTAAAACAGATCATAATTCAATGTTCGCATGGG-AAACGTG
* ** * * * *
19444476 TAGCAAAAGCCACCCATTGATAAGAAAAGTCTATTTATAGCCACTCATACCTTCGAATGCCTTGT
1 AAGTGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATACCTTCGAAAGCCTTGT
*
19444541 CACTCA-TTGTAAGTGGTTTTATAACTTTATAAATGATTTTAAATTGAATTTTCTTTCATTTCTA
66 TACTCACTT-TAAGTGGTTTTATAACTTTATAAATGATTTTAAATTGAATTTT-TTTCATTTCTA
* * * * *
19444605 GTCAAAATAGATCACAATTCAATGTTTGTATTGGGAAACGTG
129 GTTAAAACAGATCATAATTCAATGTTCGCA-TGGGAAACGTG
* * * * ** *
19444647 AAGCGAAAGCCATCCATTGACAAAAAAAGTCTATTTTTTGTCACTCATGTCTTCGAAAGCCTAGT
1 AAGTGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATACCTTCGAAAGCCTTGT
** * *
19444712 TACTCACTTTAAGTTATTTTATAACTTTATAAATTATTTTAAATTGAATTTTTTTACATATCTAG
66 TACTCACTTTAAGTGGTTTTATAACTTTATAAATGATTTTAAATTGAATTTTTTT-CATTTCTAG
* * *
19444777 TTAAAATAGATCGTAA-TCAAATGTTCGCATTGGGAAACCTG
130 TTAAAACAGATCATAATTC-AATGTTCGCA-TGGGAAACGTG
* * * *
19444818 AAGCGAAAGCCATCGATTGAGAAGAAAAGTCTATTTATAGTCACTCATGCCTTC-AAAGGCCTTG
1 AAGTGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATACCTTCGAAA-GCCTTG
** * * * * * * *
19444882 TTACTTGCTTTAAATGATTTTATAACTTTATAAATGATTTTGAACTAAATTTTTTTTATTTCTGG
65 TTACTCACTTTAAGTGGTTTTATAACTTTATAAATGATTTTAAATTGAATTTTTTTCATTTCTAG
** * * *
19444947 TTAAAACTTATTAAAATTGAATGTTCGCATAGGGAAACGTG
130 TTAAAACAGATCATAATTCAATGTTCGCAT-GGGAAACGTG
* * * * * *
19444988 AACTGAAAGCCATCCCTTGATAAGAAAAGTCTATTTATAGTGACTCATGCCTTCGAAGGCCTTGT
1 AAGTGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATACCTTCGAAAGCCTTGT
* *
19445053 TACTCGCTTTAAATGGTTTTATAACTTTAT
66 TACTCACTTTAAGTGGTTTTATAACTTTAT
19445083 TTTTGGTTAA
Statistics
Matches: 786, Mismatches: 144, Indels: 39
0.81 0.15 0.04
Matches are distributed among these distances:
169 1 0.00
170 145 0.18
171 620 0.79
172 20 0.03
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (169 bp):
AAGTGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATACCTTCGAAAGCCTTGT
TACTCACTTTAAGTGGTTTTATAACTTTATAAATGATTTTAAATTGAATTTTTTTCATTTCTAGT
TAAAACAGATCATAATTCAATGTTCGCATGGGAAACGTG
Found at i:19444565 original size:342 final size:335
Alignment explanation
Indices: 19443963--19445730 Score: 1327
Period size: 342 Copynumber: 5.3 Consensus size: 335
19443953 GAGAAATATA
* * * *
19443963 AAGTGAAAGCCATCCATTGACAAGAAAGGTCCATTTATAGTCACCCATGCATTCGAAGGCCTTGT
1 AAGTGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATGCCTTCGAAGGCCTTGT
** * * * * ** * *
19444028 TACTTACTTTAAGTGGTTTTATAACTTTATAAATGATTTTAAAT-TGAATTTTCTTTCATTTCTA
66 TACTCGCTTTAAATGGTTTTATATC-CTATAAATTATTTTAAATCAAAAGTTT-TTTCATTT-TT
* * ** * ** * * **
19444092 GCTAAAACATATCACAATTC-AATGTTCGCATCAAGAAACGTGAAGTGAAAGCCATCCATTGACA
128 GTTAAAGCA-ATCGTAA-TCGAATGTTCACAT-GGGAAACATGTAGCAAAAGCCATCCATTGACA
* * * * * * *
19444156 AGAAAAGTCTATTTATAGTCACTAATATCTTTGAAAGCCTAGTTACTCGCTTTAAGTTGTTTTAT
190 AGAAAAGTCTATTTATAGTCACTCATACCTTCGAAGGCCTTGTTACTC-ATTTAAGTGGTTTTAT
*
19444221 AACTTTATAAATGATTTTAAATTGAATTTTTTTATATTTCTGGTTAAAACAGATCATAATCGAAT
254 AACTTTATAAATGATTTTAAATTGAATTTTTTT-TATTTCTGGTTAAAACAGATCACAATC-AAT
* * *
19444286 GTTCGCATCGAGAAATGTG
317 GTTTGCATCGGGAAACGTG
* * * * * *
19444305 AAGTGAAAGCTATTCATTGACAAGCAAAGTCTATTTATAGTCCCTCATACCTTTGAAGGCCTTGT
1 AAGTGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATGCCTTCGAAGGCCTTGT
** * * *
19444370 TACTCATTTTAAATGGTTTTTTAGTCCTATAAATGATTTTAGATCAAAAGTTTTTTCATTTTTGT
66 TACTCGCTTTAAATGGTTTTATA-TCCTATAAATTATTTTAAATCAAAAGTTTTTTCATTTTTG-
* * * * *
19444435 TTAAAGCAAATCGTAGTTGAATGGTCACATGGGTAAACATGTAGCAAAAGCCACCCATTGATAAG
129 TTAAAGC-AATCGTAATCGAATGTTCACATGGG-AAACATGTAGCAAAAGCCATCCATTGACAAG
* * *
19444500 AAAAGTCTATTTATAGCCACTCATACCTTCGAATGCCTTGTCACTCATTGTAAGTGGTTTTATAA
192 AAAAGTCTATTTATAGTCACTCATACCTTCGAAGGCCTTGTTACTCATT-TAAGTGGTTTTATAA
* * * *
19444565 CTTTATAAATGATTTTAAATTGAATTTTCTTTCATTTCTAGTCAAAATAGATCACAATTCAATGT
256 CTTTATAAATGATTTTAAATTGAATTTT-TTTTATTTCTGGTTAAAACAGATCACAA-TCAATGT
* *
19444630 TTGTATTGGGAAACGTG
319 TTGCATCGGGAAACGTG
* * * * * * *
19444647 AAGCGAAAGCCATCCATTGACAAAAAAAGTCTATTTTTTGTCACTCATGTCTTCGAAAGCCTAGT
1 AAGTGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATGCCTTCGAAGGCCTTGT
* * ** * * ** * * *
19444712 TACTCACTTTAAGTTATTTTATAACTTTATAAATTATTTTAAAT-TGAATTTTTTTACATATCTA
66 TACTCGCTTTAAATGGTTTTATATC-CTATAAATTATTTTAAATCAAAAGTTTTTT-CAT-TTTT
** * * * * * * *
19444776 GTTAAAATAGATCGTAATCAAATGTTCGCATTGGGAAACCTGAAGCGAAAGCCATCGATTGAGAA
128 GTTAAAGCA-ATCGTAATCGAATGTTCACA-TGGGAAACATGTAGCAAAAGCCATCCATTGACAA
* * * *
19444841 GAAAAGTCTATTTATAGTCACTCATGCCTTCAAAGGCCTTGTTACTTGC-TTTAAATGATTTTAT
191 GAAAAGTCTATTTATAGTCACTCATACCTTCGAAGGCCTTGTTAC-T-CATTTAAGTGGTTTTAT
* * * ** * * *
19444905 AACTTTATAAATGATTTTGAACTAAATTTTTTTTATTTCTGGTTAAAACTTATTAAAATTGAATG
254 AACTTTATAAATGATTTTAAATTGAATTTTTTTTATTTCTGGTTAAAACAGATCACAA-TCAATG
* *
19444970 TTCGCATAGGGAAACGTG
318 TTTGCATCGGGAAACGTG
* * * *
19444988 AACTGAAAGCCATCCCTTGATAAGAAAAGTCTATTTATAGTGACTCATGCCTTCGAAGGCCTTGT
1 AAGTGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATGCCTTCGAAGGCCTTGT
* * * * * *
19445053 TACTCGCTTTAAATGGTTTTATA-ACT-T-TATT-TTTGGTTAA--AACAG-ATTATCA---TTG
66 TACTCGCTTTAAATGGTTTTATATCCTATAAATTATTT--TAAATCAAAAGTTTTTTCATTTTTG
* * * * *
19445108 -----G--AT-GT--TCGCA---TCA-A---GAAACATGCAACACAAGCCATCCATTGACTAG-A
129 TTAAAGCAATCGTAATCGAATGTTCACATGGGAAACATGTAGCAAAAGCCATCCATTGACAAGAA
* * * * * * * *
19445155 AAGTCCATTTAAAGCTC-GTCATGCTTTTGAAGGCCTTCTTACTCACTTTAAGTGCTTTTATAAC
194 AAGTCTATTTATAG-TCACTCATACCTTCGAAGGCCTTGTTACTCA-TTTAAGTGGTTTTATAAC
* * * * *
19445219 TTTATAAATGATTTTAAATTGAATTTTCTTTCATTTCTAGCTAAAACATATCATAACTCAATGTT
257 TTTATAAATGATTTTAAATTGAATTTT-TTTTATTTCTGGTTAAAACAGATCACAA-TCAATGTT
*
19445284 TGCATCGGGAAATGTG
320 TGCATCGGGAAACGTG
* * * *
19445300 AAGTGAAAGCCATCCATTGACAATAAAAGTCCATTTATAGTCACTCATACCTTCG-AGAGCCTAG
1 AAGTGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATGCCTTCGAAG-GCCTTG
* * * * ** *
19445364 TTACTTGCTTTAAATGGTTTTATTGTCTTATAAATTTTTTTAAATCAAATTTTTTTTTATTTTTT
65 TTACTCGCTTTAAATGGTTTTA-TATCCTATAAATTATTTTAAATCAAAAGTTTTTTCA-TTTTT
* * * * **** * ** * * *
19445429 GTTAAACCATATCATAATTGGATGTTTGTTTTGAGAAATGTGTAGCGAAAGCCACCCATTGACGA
128 GTTAAAGCA-ATCGTAATCGAATG-TTCACATGGGAAACATGTAGCAAAAGCCATCCATTGACAA
* * * * ** * * * *
19445494 GAAAAGTCTATTTATTGTCACACACACCTTCAAATACCCTATCACTCATTTTAAGTGGTTTTATT
191 GAAAAGTCTATTTATAGTCACTCATACCTTCGAAGGCCTTGTTACTCA-TTTAAGTGGTTTTATA
* * * * * * *
19445559 TCTTTATAAAATGATTTTAAATTGAATTGCTTTTCATTTTTGGTTAAAACGGATTACAATTAGAT
255 ACTTTAT-AAATGATTTTAAATTGAATT-TTTTTTATTTCTGGTTAAAACAGATCACAATCA-AT
** *
19445624 GTTTGCATTAGGAAACGTT
317 GTTTGCATCGGGAAACGTG
* * * *
19445643 AAGCGAAAGCCATCCATTGACAAGAAAAGTCTGTTTATAGGCACTCATGCCTTCAAAGGCCTTGT
1 AAGTGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATGCCTTCGAAGGCCTTGT
19445708 TACTCGCTTTAAATGGTTTTATA
66 TACTCGCTTTAAATGGTTTTATA
19445731 ACTTTATATG
Statistics
Matches: 1110, Mismatches: 256, Indels: 120
0.75 0.17 0.08
Matches are distributed among these distances:
309 1 0.00
310 1 0.00
311 75 0.07
312 142 0.13
313 1 0.00
314 1 0.00
315 4 0.00
316 4 0.00
317 7 0.01
318 4 0.00
320 3 0.00
322 5 0.00
323 2 0.00
330 2 0.00
331 3 0.00
333 3 0.00
335 2 0.00
336 6 0.01
337 5 0.00
338 4 0.00
339 1 0.00
341 156 0.14
342 520 0.47
343 154 0.14
344 4 0.00
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.37
Consensus pattern (335 bp):
AAGTGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATGCCTTCGAAGGCCTTGT
TACTCGCTTTAAATGGTTTTATATCCTATAAATTATTTTAAATCAAAAGTTTTTTCATTTTTGTT
AAAGCAATCGTAATCGAATGTTCACATGGGAAACATGTAGCAAAAGCCATCCATTGACAAGAAAA
GTCTATTTATAGTCACTCATACCTTCGAAGGCCTTGTTACTCATTTAAGTGGTTTTATAACTTTA
TAAATGATTTTAAATTGAATTTTTTTTATTTCTGGTTAAAACAGATCACAATCAATGTTTGCATC
GGGAAACGTG
Found at i:19444916 original size:513 final size:511
Alignment explanation
Indices: 19443968--19445082 Score: 1432
Period size: 513 Copynumber: 2.2 Consensus size: 511
19443958 ATATAAAGTG
* * * * * * *
19443968 AAAGCCATCCATTGACAAGAAAGGTCCATTTATAGTCACCCATGCATTCGAAGGCCTTGTTACTT
1 AAAGCCACCCATTGATAAGAAAAGTCTATTTATAGTCACTCATGCCTTCGAAGGCCTTGTTACTC
19444033 ACTTTAAGTGGTTTTATAACTTTATAAATGATTTTAAATTGAATTTTCTTTCATTTCTAGCTAAA
66 A-TTTAAGTGGTTTTATAACTTTATAAATGATTTTAAATTGAATTTTCTTTCATTTCTAGCTAAA
* * *
19444098 ACATATCACAATTCAATGTTCGCATCAAGAAACGTGAAGTGAAAGCCATCCATTGACAAGAAAAG
130 ACAGATCACAATTCAATGTTCGCATCAAGAAACGTGAAGCGAAAGCCATCCATTGACAAAAAAAG
* * *
19444163 TCTATTTATAGTCACTAATATCTTTGAAAGCCTAGTTACTCGCTTTAAGTTGTTTTATAACTTTA
195 TCTATTTATAGTCACTAATATCTTCGAAAGCCTAGTTACTCACTTTAAGTTATTTTATAACTTTA
* * * *
19444228 TAAATGATTTTAAATTGAATTTTTTTATATTTCTGGTTAAAACAGATCATAATCGAATGTTCGCA
260 TAAATGATTTTAAATTGAATTTTTTTACATATCTAGTTAAAACAGATCATAATCAAATGTTCGCA
** * * * *
19444293 TCGAGAAATGTGAAGTGAAAGCTATTCATTGACAAGCAAAGTCTATTTATAGTCCCTCATACCTT
325 TCGAGAAACCTGAAGCGAAAGCCATTCATTGACAAGAAAAGTCTATTTATAGTCACTCATACCTT
** * * * * *
19444358 TGAAGGCCTTGTTACTCATTTTAAATGGTTTTTTAGTCCTATAAATGATTTTAGATCAAAAGTTT
390 CAAAGGCCTTGTTACTCACTTTAAATGATTTTTAACTCCTATAAATGATTTT-GAACAAAAGTTT
* * * ** * *
19444423 TTTCATTTTTGTTTAAAGCAAATCGTAGTTGAATGGTCACAT-GGGTAAACATGTAGC-A
454 TTTCATTTCTGGTTAAAACAAATCAAAATTGAATGGTCACATAGGG-AAACATG-AACTA
* * * *
19444481 AAAGCCACCCATTGATAAGAAAAGTCTATTTATAGCCACTCATACCTTCGAATGCCTTGTCACTC
1 AAAGCCACCCATTGATAAGAAAAGTCTATTTATAGTCACTCATGCCTTCGAAGGCCTTGTTACTC
19444546 ATTGTAAGTGGTTTTATAACTTTATAAATGATTTTAAATTGAATTTTCTTTCATTTCTAG-TCAA
66 ATT-TAAGTGGTTTTATAACTTTATAAATGATTTTAAATTGAATTTTCTTTCATTTCTAGCT-AA
* * * ***
19444610 AATAGATCACAATTCAATGTTTGTATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAAAAAA
129 AACAGATCACAATTCAATGTTCGCATCAAGAAACGTGAAGCGAAAGCCATCCATTGACAAAAAAA
* * * *
19444675 GTCTATTTTTTGTCACTCATGTCTTCGAAAGCCTAGTTACTCACTTTAAGTTATTTTATAACTTT
194 GTCTATTTATAGTCACTAATATCTTCGAAAGCCTAGTTACTCACTTTAAGTTATTTTATAACTTT
* * *
19444740 ATAAATTATTTTAAATTGAATTTTTTTACATATCTAGTTAAAATAGATCGTAATCAAATGTTCGC
259 ATAAATGATTTTAAATTGAATTTTTTTACATATCTAGTTAAAACAGATCATAATCAAATGTTCGC
* * * *
19444805 ATTGGGAAACCTGAAGCGAAAGCCA-TCGATTGAGAAGAAAAGTCTATTTATAGTCACTCATGCC
324 ATCGAGAAACCTGAAGCGAAAGCCATTC-ATTGACAAGAAAAGTCTATTTATAGTCACTCATACC
** * * *
19444869 TTCAAAGGCCTTGTTACTTGCTTTAAATGATTTTATAACT-TTATAAATGATTTTGAACTAAATT
388 TTCAAAGGCCTTGTTACTCACTTTAAATGATTTT-TAACTCCTATAAATGATTTTGAACAAAAGT
* ** * * * * *
19444933 TTTTTTATTTCTGGTTAAAACTTATTAAAATTGAATGTTCGCATAGGGAAACGTGAACTG
452 TTTTTCATTTCTGGTTAAAACAAATCAAAATTGAATGGTCACATAGGGAAACATGAACTA
*
19444993 AAAGCCATCCC-TTGATAAGAAAAGTCTATTTATAGTGACTCATGCCTTCGAAGGCCTTGTTACT
1 AAAGCCA-CCCATTGATAAGAAAAGTCTATTTATAGTCACTCATGCCTTCGAAGGCCTTGTTACT
* *
19445057 CGCTTTAAATGGTTTTATAACTTTAT
65 C-ATTTAAGTGGTTTTATAACTTTAT
19445083 TTTTGGTTAA
Statistics
Matches: 516, Mismatches: 78, Indels: 17
0.84 0.13 0.03
Matches are distributed among these distances:
511 2 0.00
512 126 0.24
513 385 0.75
514 3 0.01
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (511 bp):
AAAGCCACCCATTGATAAGAAAAGTCTATTTATAGTCACTCATGCCTTCGAAGGCCTTGTTACTC
ATTTAAGTGGTTTTATAACTTTATAAATGATTTTAAATTGAATTTTCTTTCATTTCTAGCTAAAA
CAGATCACAATTCAATGTTCGCATCAAGAAACGTGAAGCGAAAGCCATCCATTGACAAAAAAAGT
CTATTTATAGTCACTAATATCTTCGAAAGCCTAGTTACTCACTTTAAGTTATTTTATAACTTTAT
AAATGATTTTAAATTGAATTTTTTTACATATCTAGTTAAAACAGATCATAATCAAATGTTCGCAT
CGAGAAACCTGAAGCGAAAGCCATTCATTGACAAGAAAAGTCTATTTATAGTCACTCATACCTTC
AAAGGCCTTGTTACTCACTTTAAATGATTTTTAACTCCTATAAATGATTTTGAACAAAAGTTTTT
TCATTTCTGGTTAAAACAAATCAAAATTGAATGGTCACATAGGGAAACATGAACTA
Found at i:19445397 original size:171 final size:169
Alignment explanation
Indices: 19445193--19445738 Score: 504
Period size: 171 Copynumber: 3.2 Consensus size: 169
19445183 GAAGGCCTTC
* * * ** *
19445193 TTACTCACTTTAAGTGCTTTTATAACTTTATAAATGATTTTAAATTGAATTTTCTTTCATTTCTA
1 TTACTCGCTTTAAATGGTTTTATTTCTTTATAAATGATTTTAAATTGAATTTTCTTTCATTTTTA
* * *
19445258 GCTAAAACATATCATAACTCAATGTTTGCATCGGGAAATGTGAAGTGAAAGCCATCCATTGACAA
66 GTTAAAACATATCATAA-TCAATGTTTGCATTGGGAAATGTGAAGCGAAAGCCATCCATTGACAA
* * *
19445323 TAAAAGTCCATTTATAGTCACTCATACCTTCGAGAGCCTAG
130 GAAAAGTCTATTTATAGTCACTCATACCTTC-AAAGCCTAG
* ** ** * *
19445364 TTACTTGCTTTAAATGGTTTTATTGTC-TTATAAATTTTTTTAAATCAAATTTTTTTTTATTTTT
1 TTACTCGCTTTAAATGGTTTTATT-TCTTTATAAATGATTTTAAATTGAATTTTCTTTCATTTTT
* * ** ** * * * *
19445428 TGTTAAACCATATCATAATTGGATGTTTGTTTTGAGAAATGTGTAGCGAAAGCCACCCATTGACG
65 AGTTAAAACATATCATAA-TCAATGTTTGCATTGGGAAATGTGAAGCGAAAGCCATCCATTGACA
* * * *
19445493 AGAAAAGTCTATTTATTGTCACACACACCTTCAAATACCCTA-
129 AGAAAAGTCTATTTATAGTCACTCATACCTTC-AA-AGCCTAG
* ** * *
19445535 TCACTCATTTTAAGTGGTTTTATTTCTTTATAAAATGATTTTAAATTGAA-TTGCTTTTCATTTT
1 TTACTCGCTTTAAATGGTTTTATTTCTTTAT-AAATGATTTTAAATTGAATTTTC-TTTCATTTT
* ** * * * * * *
19445599 TGGTTAAAACGGATTACAATTAGATGTTTGCATTAGGAAACGTTAAGCGAAAGCCATCCATTGAC
64 TAGTTAAAACATATCATAATCA-ATGTTTGCATTGGGAAATGTGAAGCGAAAGCCATCCATTGAC
* * * *
19445664 AAGAAAAGTCTGTTTATAGGCACTCATGCCTTCAAAGGCCTTG
128 AAGAAAAGTCTATTTATAGTCACTCATACCTTCAAA-GCCTAG
**
19445707 TTACTCGCTTTAAATGGTTTTATAACTTTATA
1 TTACTCGCTTTAAATGGTTTTATTTCTTTATA
19445739 TGTAAAGCCC
Statistics
Matches: 289, Mismatches: 78, Indels: 16
0.75 0.20 0.04
Matches are distributed among these distances:
170 3 0.01
171 160 0.55
172 126 0.44
ACGTcount: A:0.31, C:0.15, G:0.14, T:0.40
Consensus pattern (169 bp):
TTACTCGCTTTAAATGGTTTTATTTCTTTATAAATGATTTTAAATTGAATTTTCTTTCATTTTTA
GTTAAAACATATCATAATCAATGTTTGCATTGGGAAATGTGAAGCGAAAGCCATCCATTGACAAG
AAAAGTCTATTTATAGTCACTCATACCTTCAAAGCCTAG
Done.