Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38630433
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 2298367 characters in sequence are not A, C, G, or T
File 48 of 97
Found at i:19446161 original size:28 final size:27
Alignment explanation
Indices: 19446129--19446181 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
19446119 AATTTGGAGT
*
19446129 AAGGGTAAAATGGTAATTTTGCCACCCC
1 AAGGGCAAAATGGTAATTTT-CCACCCC
*
19446157 AAGGGCAAAATTGTAATTTTCCACC
1 AAGGGCAAAATGGTAATTTTCCACC
19446182 ATCAGGATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 5 0.22
28 18 0.78
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (27 bp):
AAGGGCAAAATGGTAATTTTCCACCCC
Found at i:19448927 original size:171 final size:171
Alignment explanation
Indices: 19448612--19462543 Score: 10940
Period size: 171 Copynumber: 81.7 Consensus size: 171
19448602 GGTCGTGACA
* * * * * * * * *
19448612 TTATAAATGATTTTGAACTGAA-TTTTTTTCATTTCTAGTTAAAGCAGTTCATAATTGAATGCTC
1 TTATAAATGATTTTAAATTAAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGTTT
* * * * * * *
19448676 ACTTTGAGAAACGTGAAGCTAAAGCAATCCATT-----GATAAGTCCATTTATAGTCACTTATGC
66 GCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
* * * * * *
19448736 CGTCGAATGCCTTGTCACTCGTTTTAAGTGATTTTACAACT
131 CTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* * * * * * * * * *
19448777 TTATTAATCAATTTAACTTAAATATTTTTACATTTCTGGTTAAAACATATCATAATGGAATGTTC
1 TTATAAATGATTTTAAATTAAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGTTT
*** * * *
19448842 GCATCAAGAAACGTGAAGCGAAAGCCATCTATTTACAAGAAAAGTTCATTTATAGTCACTCATGC
66 GCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
* * * * * *
19448907 CTTTGAATGCCTTCTCACTCGTTTTGAGTGGTTTTATAACT
131 CTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* * * * * *
19448948 TTATAAATCATTTTAAATTGAATGTTTTTTCATATTTGGTTAAAACAGCTCATCATTTG-ATGTT
1 TTATAAATGATTTTAAATTAAATTTTTTTTCATTTTTGGTTAAAACAGATCAT-AATTGAATGTT
* * ** * *
19449012 TGCATTGAGAACCGTGAAGCGAAAGTGATCCATTTACAAGAAAAGTTCATTTATAGTCACTCATG
65 TGCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * *
19449077 CCTTTGAAGGCCTTGCTACAT-GCTTTAAGTGATTTTTTAACT
130 CCTTCGAAAGCCTTGTTAC-TCGCTTTAAGTGGTTTTATAACT
* * ** * * * * *
19449119 TTATAAATGATTTTAAATTGAACTTTCATTCATTTCTAGCTAAAACAGATCATAATTCAATGCTT
1 TTATAAATGATTTTAAATTAAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGTTT
* *
19449184 GCATTGGGAAACATGAAGTGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
66 GCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
* * * * **
19449249 CTTCGAAAGCCTAGTTACTTGCTTTAAATGGTTGTAT-GGT
131 CTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* * * * * *
19449289 CTTATAAATTATTTT-AATTCAAA--TTTTTTCATTCATT-CTTAAAACACATCATAATTGGATC
1 -TTATAAATGATTTTAAATT-AAATTTTTTTTCATT-TTTGGTTAAAACAGATCATAATTGAATG
* * * ** * * *
19449350 TTTGCATCGAGAAACGTGTAGAAAAAGCCACCCATTGACAAGAAAAGTCTATTTATAGTCACTTA
63 TTTGCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCA
* * * * * * *
19449415 TGCCTTTGAATGCTTTGTGACTTGTTTTAAGTGATTTTATAACT
128 TGCCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* * * * * *
19449459 TTATAAAATGATTTTAAACTGAATTTTTTTGCATTTCTGGTTAAAACTGATCAGAATTG-ATGTT
1 TTAT-AAATGATTTTAAATTAAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGTT
* ** * * * * *
19449523 CGCATCAGGAAATGTGAAGTGAAAGCCATCGATTAACATGAAAAGTCCATTTATAAG-CACTCAT
65 TGCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTAT-AGTCACTCAT
* * * * * *
19449587 GCCTTTGAAAGCCCTGTTGCTCACTTTAAATAGTTTTATAACT
129 GCCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* * * ** * * * *
19449630 TTATAAATGATTTTGAACT-GATTTCTTTTTTGTTTCTAGCTAAACCAGATCATAATTGAATGTT
1 TTATAAATGATTTTAAATTAAATTT-TTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGTT
* * * * * *
19449694 CGCATTAGGAAAAGAGAAGCGAAAGCCACCCATTGACAAGAAAAGTCCATTTCTAGTCACTCATG
65 TGCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * *
19449759 CCTTCGAATGCCATGTTACTCACTTTAAGTTGTTTTATAACT
130 CCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* * * *
19449801 TTATAAATGATTTTAAATTGAATTTTTTTTACATTTCTAGTTAAAACATATCATAATTGAATGTT
1 TTATAAATGATTTTAAATTAAATTTTTTTT-CATTTTTGGTTAAAACAGATCATAATTGAATGTT
** * * * * **
19449866 CACATAGGGAAACATGAAGCGAAAGCCATACATTGGCAAGAAAAGTCCATTTATAGTTGCTCATG
65 TGCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * ** * *
19449931 CCTT-TAAAGGCCTTGGTACTTACTTTAAATGGTTTTTTAACT
130 CCTTCGAAA-GCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* * * * *
19449973 TTATAAATGATTTTAAACTAAATGTTTTTTT-ATTTCTGGTTAAAATATAGCATAATTGAATGTT
1 TTATAAATGATTTTAAATTAAAT-TTTTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGTT
* * * * *
19450037 TGCATAGGCAAACATAAAGCTAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
65 TGCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* *
19450102 -CTATCGAAGGCCTTGTTACTCGCTTTAAATGGTTTTATAACT
130 CCT-TCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* * * *
19450144 TTATAAATGATTTTAAACTT-AA-TTTTTTCCATTTCTAGTTAAAACTA-ATCATAATTGAATAT
1 TTATAAATGATTTTAAA-TTAAATTTTTTTTCATTTTTGGTTAAAAC-AGATCATAATTGAATGT
*** * *
19450206 TTGCATCAAGAAATGTGAAGCGAAAGCCATCCATTGATATA-AAAAGTCCATTTATAGTCACTCA
64 TTGCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACA-AGAAAAGTCCATTTATAGTCACTCA
* * * * *
19450270 TGTCTTCGAAGGCCCTGTTACTCGCTTTAAATGATTTTATAACT
128 TGCCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* * * * * * *
19450314 TTATAAATGATTTTGAA-CAGAATTCTTTTTCGTTTCTAGTTAAAACAGATTATAATTGAATGTT
1 TTATAAATGATTTTAAATTA-AATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGTT
* ** * * * * * *
19450378 CGC-TTCAAGAAACGTGAAGCAAAAGCCATCGATTGACAAGAAAACTCTATTTATAATCGCTCAT
65 TGCATT-GGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAT
* * * * * *** *
19450442 GCCCTCGCAATCCTTTTTACAT-GCCTTAA-ACATTTTAT-AGT
129 GCCTTCGAAAGCCTTGTTAC-TCGCTTTAAGTGGTTTTATAACT
* * * *
19450483 CTTAT-AATTATTTT-GATTCAATTTTTTTTTCATTATTT-GTTAAAACACATCATAATT-ACAT
1 -TTATAAATGATTTTAAATT-AAATTTTTTTTCATT-TTTGGTTAAAACAGATCATAATTGA-AT
* * * * * *
19450544 GTTTGCATTAGGAAACGT-ATAGCAAAAGCCACCCATTGACAAGAAAAGTCTATTTCTAGTCATT
62 GTTTGCATTGGGAAACGTGA-AGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACT
* * * * * **
19450608 CATCCCTTTGAATGCCTTGTCACGCATTTTAAGTGGTTTTATAACT
126 CATGCCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* * * * *
19450654 TTATAAAAAAT-ATTTTAAATTGAA-TTTTTTTCATTTTTTGTTAAAA-AGTATGATAATTGGAC
1 TTAT---AAATGATTTTAAATTAAATTTTTTTTCATTTTTGGTTAAAACAG-ATCATAATTGAAT
* * *** *
19450716 GTTTGCATCGAGG-AACGTGCAA-TGAAAGTTGTCCATTGACAAAAAAAGTCCATTTATAGTCAC
62 GTTTGCATTG-GGAAACGTG-AAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCAC
* * * * *
19450779 TCATACCTTTGAAAGCCTAGTTATTCGCTTTAAGTTGTTTTATAACT
125 TCATGCCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* ** * * * *
19450826 TTATAAATGATTTTAAATTGAATTTTTTTAGATTTCTAGTTAAAACATATCATAATTGAATGTTC
1 TTATAAATGATTTTAAATTAAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGTTT
* ** * * * * *
19450891 GCATTGGGAAAAGCAAAGCAAAAGCCATCCATTGA-AAAAAAAGGTCCATTTCTAGTCGCTCATA
66 GCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAA-GTCCATTTATAGTCACTCATG
* * * * * * *
19450955 CCTTTGAATGCCTTGCTGCTTGCTTTAAGTTGTTTTACAACT
130 CCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* * * * *
19450997 TTATAAATGATTTTAAATTGAATTTTTTTTACATTTCTAGTTAAAACATATCATAATTAAATGTT
1 TTATAAATGATTTTAAATTAAATTTTTTTT-CATTTTTGGTTAAAACAGATCATAATTGAATGTT
* * * * * * *
19451062 TGCATAGGAAAATGTGAAGCGAATGCTATACATTGGCAAGAAAAGTCCATTTATAGTCACTCATG
65 TGCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * *
19451127 CCTTCGAAGGCCTTGTTACTTGCTTTAAATGGTTTTTTAACT
130 CCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* * ** * * * * *
19451169 TTATAAATGATTTTGAACTAAATTTTTAATCATTTCTAGCTAAAACAGATCATAATTCAATGTTC
1 TTATAAATGATTTTAAATTAAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGTTT
* * * * * * * **
19451234 ACAATGGAAAACATGAAGCGCAAGCCATCCATTGACAAGGAAAGTCCCTTTATAGTTGCTCATGC
66 GCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
* * * ** * * **
19451299 GTTCAAAAACCTAATTACTTGCTTTAAATGGTTTTATAGTT
131 CTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* * * * * *
19451340 TTATAAATTATTTTAAATCAAA-ATTTTTTAATTCTTT-GTTAAAACACATCATAATTGGATGTT
1 TTATAAATGATTTTAAATTAAATTTTTTTTCATT-TTTGGTTAAAACAGATCATAATTGAATGTT
* * * * * ** *
19451403 TGCATTGGAAAACGTGTAA-TGAAAGCTACCCATTGATAAGAAAAGTTTATTTATAATCACGT-A
65 TGCATTGGGAAACGTG-AAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCAC-TCA
* * * ** * ** *
19451466 TGCCTTTGAATGCCTTGTCACTCATTTTAGGTAATTTTATAACC
128 TGCCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* * * * *
19451510 TTAGTAAATGATTTTAAACTGAATTTTTTTTCA-TCTTGGTTAAAACGGATCATAATTGGATGTT
1 TTA-TAAATGATTTTAAATTAAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGTT
* * * * * * *
19451574 TGCATCGAGAAACGTGAAGCAAAAGTCATCCATTGATAAAAAACAAAAGTCCATTTATAGTCATT
65 TGCATTGGGAAACGTGAAGCGAAAGCCATCCATTG----ACAAGAAAAGTCCATTTATAGTCACT
* * * * * * * *
19451639 CAAGACTTCAAAAGCCTAGTTACTTGCTTTTAGTTGTTTTTCTAACT
126 CATGCCTTCGAAAGCCTTGTTACTCGCTTTAAG-TGGTTTTATAACT
* * * * * * *
19451686 TTATAAATGATTTTAACTTGAATTTTTTTACATTTCTGGTTAAAACA-AGGCTTAATTAAATGTT
1 TTATAAATGATTTTAAATTAAATTTTTTTTCATTTTTGGTTAAAACAGA-TCATAATTGAATGTT
** * * ** *
19451750 TGCATCAGGAAACATGAAACGAGTGCCATCCATTGACAAGAAAAGTTCATTTATAGTCACTCATG
65 TGCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * * *
19451815 CCTTTGAAGGCCTTGTTACTTGCTTTAAATAGTTTTATGACT
130 CCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* * * * * * *
19451857 TTATAAATGATTTT-GATCTGAATTGTTTTTCATTTTTGATAAAAACATATCATAATTGAATGTA
1 TTATAAATGATTTTAAAT-TAAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGTT
** * * * * *
19451921 CACATTGGGAAACATGAAGTGAAAGCCATCCATTGACAAGAAAAGT-CTTGTTGTTGT-AGCTCA
65 TGCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCAT-TTATAGTCA-CTCA
* ** * *
19451984 TGCCTTC-AAATGCCTTGTCACTCATTTTAGGTGGCTTTATAACT
128 TGCCTTCGAAA-GCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* * * * *
19452028 TTATAAATCATTTTAAATTGAATTGTTTTTTGATTTTTTGTTAAAACAGATCATCATT-ATAT-T
1 TTATAAATGATTTTAAATTAAATT-TTTTTTCATTTTTGGTTAAAACAGATCATAATTGA-ATGT
*** * *
19452091 TTCGCATCAAGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCAGTTATAGTCACTCA
64 TT-GCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCA
* * * *
19452156 TTCCTTC-AAAGGCCTTGTTACTCACTTTAAATGGTTATATAACT
128 TGCCTTCGAAA-GCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* * ** * * * * **
19452200 TTATAAATGATTTTAAATTGAATTTTCTTTCATTCCTAGCTAAAACATATCATAATTCAATACTT
1 TTATAAATGATTTTAAATTAAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGTTT
* * * * * **
19452265 GCATTTGGAAACGTGAAGTGAAAGCCATCTATTGACAATAAAAGTCTATTTATAGTCGTTCATGC
66 GCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
* * * *
19452330 CTTTGAAAGCCTAGTTACTTGCTTTAAATGGTTTTAT-ACT
131 CTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* * * * * * * *
19452370 GTTATAAATTATTTTAGA-TCAA-TGTTTTTCATTTTTTGTTATAACACATCATAATTGGATGTT
1 -TTATAAATGATTTTAAATTAAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGTT
* ** *
19452433 TGCATTGAGAAACGTGAAGAAAAAGTCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
65 TGCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * **
19452498 CCTTCAAAAGCCTAGTTACTCGCTTTAAGTTATTTTATAACT
130 CCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* * *
19452540 TTATAAATGATTTTAAATT-GATTTTTTTTACATTTCTGGTTAAAACAGATCATAATTAAATGTT
1 TTATAAATGATTTTAAATTAAATTTTTTTT-CATTTTTGGTTAAAACAGATCATAATTGAATGTT
* * ** ** *
19452604 TACATTGGGAAACGTGAAGCAAAAGCCATTTATTGACAAGAAAAGTCCATCCATAGCCACTCATG
65 TGCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * * *
19452669 CCTTTGTAGGCCTTGTCACTCACTTTAAATGGTTTTATAACT
130 CCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* * * * *
19452711 TTGTAAATGATTTT-GATATGAA-TTTCTTTCATTTCTGGTTAAAACAGATCATAATTGAATGTT
1 TTATAAATGATTTTAAAT-TAAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGTT
* * * * *
19452774 TGCATTAGGAAACGTGAAGCAAAAGCCATCGATTGATAAGAAAAGTCTATTTATAGTCACTCATG
65 TGCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * *
19452839 CCTTCG-AAGTCCTTGTTGCTTGCTTTAAATGATTTTATAACT
130 CCTTCGAAAG-CCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* * * * * * *
19452881 TTATAAATGATTTTGAACTGAATTTTTTTT-AGTTCTAGTTAAAACAGATCATAATTGGATGTTT
1 TTATAAATGATTTTAAATTAAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGTTT
* * * * * * *
19452945 GCATTGGGAAACGAGAAGTGAAGGCTATCCATTCATAAGAAATGTCCATTTATAGTCACTCATGC
66 GCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
* * * * *
19453010 CTT-TAAATGCCTTGTCAGTCGATTTAGGTGGTTTTATAACT
131 CTTCGAAA-GCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* * ** * * * * *
19453051 TTATAAATCATTTTAAATT-GATTTTTTTTCATTTTTATTTAAAATAAAACATGATTGAATGTTC
1 TTATAAATGATTTTAAATTAAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGTTT
*** * * * ** *
19453115 GCATCAAGAAACATGAGGAGAAAGCCATCCATTGACAAGAAAAGTTTATTTATAGTCACTCATGT
66 GCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
* * * * *
19453180 CATCGAAGGCCTTATTACTCACTTTAAATGGTTTTATAACT
131 CTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* * ** **
19453221 TTATTAATGATTTT-GAGCAGAATTGTTTTTTCATTTTTGGTTAAAAGCTTATCATAATTGAATG
1 TTATAAATGATTTTAAATTA-AATT-TTTTTTCATTTTTGGTTAAAA-CAGATCATAATTGAATG
* * * *
19453285 TTCGCTTTGGGAAACATGAAGCGAAAGCCATCCATTCACAAGAAAAGTCCATTTATAGTCACTCA
63 TTTGCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCA
* * * ** *
19453350 TGCCTTCGAATGCTTTGTCACTCATTTTGAGTGGTTTTATAACT
128 TGCCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* * * *
19453394 TTATAAATTAATTTAACTTGAATTTTTTTTACATTTTTGGTTAAAACAGATCATAATTGAATGTT
1 TTATAAATGATTTTAAATTAAATTTTTTTT-CATTTTTGGTTAAAACAGATCATAATTGAATGTT
** *** ** * * *
19453459 CACATCAAGAAATATGAAGCGAAAGTCATCCATTGAAAAGAAAAGTCCATTTATAGTCACTTATG
65 TGCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
*
19453524 CCTTCGAAGGCCTTGTTACTCGCTTTAAGTGG-TTTATAACT
130 CCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* * * * * * *
19453565 TTGTAAATGATTTTAAATTGAATTTTCTTTCATTTCTGGCTAAAACAGATCATAATTCAATGTTC
1 TTATAAATGATTTTAAATTAAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGTTT
* * * * * * *
19453630 ACATTGGGAAATGTCAAGCAAAAGCCATCCATTGACAAG-AAAGTCCATTTATAGGCATTAATGC
66 GCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
** * *
19453694 CTTCGAAAGCCAAGTTACTTGCTTTAAGTTGTTTTATAACT
131 CTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* * * * *
19453735 TTATAAATGATTTTAAATTGAATTTTTTTACATTTTTGGTTAAAACAGATCATGATCGAATGTTC
1 TTATAAATGATTTTAAATTAAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGTTT
* * * * *
19453800 GCATTGAGAAACATGAAGCGAAAGCCATCCATTGACAAGCAAAGTCCATTTATAGTCCCTCATAC
66 GCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
* * *** * * * *
19453865 TTTTGAAAGCCTTGTTACTTATTTTAAATGGTTTTTTTAGT
131 CTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* * * * * * * * *
19453906 CCTATAAATGATTTTAGATCCAAA-TTTTTCTCATTTTTGTTTTAAAGCATATCATAGTTGGATG
1 -TTATAAATGATTTTAAAT-TAAATTTTTTTTCATTTTTG-GTTAAAACAGATCATAATTGAATG
* **** * * * * *
19453970 TTCGCATCCATAAACATGTAGCGAAAGCCACCCATTGATAAGAAAAGTCTATTTATAGTCACTCA
63 TTTGCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCA
* * *
19454035 TGCCTTC-AAATGCCTTATCACTC-ATTGTAAGTGGTTTTATAACT
128 TGCCTTCGAAA-GCCTTGTTACTCGCTT-TAAGTGGTTTTATAACT
* * * * *
19454079 TTTTAAAATTATTTTAAATT-GATTTGTTTTTCATTTTTGGTTAAAATAGAACATAATTGAATGT
1 TTAT-AAATGATTTTAAATTAAATTT-TTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGT
* * * * * * * *
19454143 TTGCATTAGGAAATGTAAAGCGAAAGCCATCCATTTACAATAAAAGTTCATTT-TTGTCACCCAT
64 TTGCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAT
** * * *
19454207 ATCTTCGAAAGCCTAGTTACTCACTTTAAGTTGTTTTATAACT
129 GCCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* * * * * * *
19454250 TTATAAATGATTTTGAACTGAATTTTTTTT-ATATCTGGTTAAAACGGATCATAATTGAATGTTC
1 TTATAAATGATTTTAAATTAAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGTTT
* * ** * * * * * *
19454314 GCATAGGAAAACACGAAGCAAAAGTCATCCCTTGACAAGAAAAGTCCATTTTTAGTGACTCATAC
66 GCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
* * *
19454379 CTTCGAAGGCCTTGTTACTCGCTTTAAATAGTTTTATAACT
131 CTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* ** * * * * *
19454420 CTATAAACCATTTTAAATTAAATGTTTTCTCAGTTTTGGTTAAAACAGATCATCATTGGATGTTT
1 TTATAAATGATTTTAAATTAAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGTTT
* * *
19454485 GCA-TGAAGAAACGTGAAGCAAAAGCCATCCATTGACTAGAAAAGTCCATTTATAGTC-CGTCAT
66 GCATTG-GGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCAC-TCAT
* *
19454548 ACCTT-TAAAGGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
129 GCCTTCGAAA-GCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* * * * ** * *
19454591 TTATAAATGATTTTAAATTGAATTTTCTTTCATTTCTAGCAAAAACAGATCCTAATTCAATGTTT
1 TTATAAATGATTTTAAATTAAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGTTT
* * * * * * * **
19454656 GCATTAGGAAATGTGAAGTGAAAGCTATCCATTGACAATAAAAGTCTATTTAAAGTTGCTCATGC
66 GCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
* ** * * *
19454721 CTTCGAGAGTGTAGTTACTCGCTTTAAATGGTTTTATTA-T
131 CTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* * * * * * *
19454761 CTTATAAATTATTTTAGA-TCAATTTTTTTTCATTTTTTGTTAAACCACATCATAATTGGATGTT
1 -TTATAAATGATTTTAAATTAAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGTT
* ** * * * * * * * * *
19454825 TG-TTTCAAGAAACATGTAGTGAAAGCTA-CCTATTAACAAGAAAAGTCTATTTAGAGCCACACA
65 TGCATT-GGGAAACGTGAAGCGAAAGCCATCC-ATTGACAAGAAAAGTCCATTTATAGTCACTCA
* * * * * ** **
19454888 TGCTTTTGACTA-CCCTGTCACTCATTTTAAGTGGTTTTATTTCT
128 TGCCTTCGA-AAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* ** * ** * *
19454932 TTATAAAATGATTTTAAATTGAATTGCTTTTCATTGTTGGTTAAAAGGGATCACAATTGGATGTT
1 TTAT-AAATGATTTTAAATTAAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGTT
* * * *
19454997 TGTATTGCGAAACGTGAAGCGAAATCCATCCATTGACAAGAAAAGTCCATTTATAGTCACGCATG
65 TGCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
*
19455062 CCTTC-AAAGGCCTTGTTACTCGCTTTAAATGGTTTTATAACT
130 CCTTCGAAA-GCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* * * * * * * * * *
19455104 TTATAAATAATTTTGAACTGAATTGTTTTGCATTTCTAGTTAAAACATATCATAATTGAATGTTC
1 TTATAAATGATTTTAAATTAAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGTTT
* * * * * *
19455169 GCATTGGGAAACTTGAAGCAAAAGCAATGCATTGACAAGAGAAGTCCATTGATAGTCACTCATGC
66 GCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
* * * *
19455234 CTTCGAAGGCCTTGTGACTTGCTTTAAATGGTTTTATAA-T
131 CTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* * * * * * *
19455274 GTTATAAATGATTTTGAACTAAATTTTTTTTTCAATTCTAGTTAAAACAGATCATCATTGAATGC
1 -TTATAAATGATTTTAAATTAAA-TTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGT
* * * * * * *
19455339 TCGCTTTGGGAAATGTGATGTGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAATCACTCAT
64 TTGCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAT
* * ** *
19455404 GCCTT-TAAATGCCTTGTCACTCATTTTAAGTGATTTTATAACT
129 GCCTTCGAAA-GCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* * *
19455447 TTATAAATCGA-TTTAACTT-GATTTTTTTTACATTTCTGGTTAAAACAGATCATAATTGAATGT
1 TTATAAAT-GATTTTAAATTAAATTTTTTTT-CATTTTTGGTTAAAACAGATCATAATTGAATGT
* ** * ** * * ** * *
19455510 TCGCATCAGAAAATATAAAGTGAAAGCCATTTATTCACAAGAAAAGTCCATTTATAGTCAGTCAT
64 TTGCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAT
* * *
19455575 ACCTTC-AAATGCCTT-TTCACTCGTTTTGAGTGGTTTTATAACT
129 GCCTTCGAAA-GCCTTGTT-ACTCGCTTTAAGTGGTTTTATAACT
* * * * * *
19455618 TTATAAATCATTTTAAATTGAATATTTTTTCATTTTTGGTTAAAACAGCTCATCATTGGATGTTT
1 TTATAAATGATTTTAAATTAAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGTTT
*** * * * * * *
19455683 GCATCAAGAAACATTAAGTGAAAGTCATCCATTTACAAGAAAAGTTCATTTATAGTCACTCATGC
66 GCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
* * * *
19455748 CTTC-AAAGGCCTTGCTGCTCACTTTAAATGGTTTTATAACT
131 CTTCGAAA-GCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* * * * * * * * *
19455789 TTATAAATGATTTTAAATTGAACTTTCTTTCATTTCTAGCTAAAACAGATTATAATTCAATGTTC
1 TTATAAATGATTTTAAATTAAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGTTT
* ** ** * * * **
19455854 ACATCCGGAAACAAGAAGTGAAAGCCATCCATTGACAACAAAAGTCCATCTATAGTCGTTCATGC
66 GCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
* * **
19455919 CTTCGAAAG-CTTAGTTACTTGCTTTAAATGGTTTTAT-GGT
131 CTTCGAAAGCCTT-GTTACTCGCTTTAAGTGGTTTTATAACT
* * * *
19455959 CTTATAAATTATTTT-AATTCAA------TT--TTTTT--TTAAAACACATCATAATTGGATGTT
1 -TTATAAATGATTTTAAATTAAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGTT
* * * * * * * * * *
19456013 TGCA-TCGAAAACAT-TAGCAAAAGCCACCCATAGACTAGAAAAGTCTATTTATAGTAAC-CTAT
65 TGCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTC-AT
* * * ***
19456075 GCATT-TAAATGCCTTGTGACTTATTTTAAGTGGTTTTATAACT
129 GCCTTCGAAA-GCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* * * * *
19456118 TTAAAAAATGATTTTAAACTGAATCTTTTTACATTTTTGGTT-------A--A-AATTGAATGTT
1 TT-ATAAATGATTTTAAATTAAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGTT
* * ** * * * * *
19456173 CGGATCAGGAAATGTGAAGCGAAAGCTATCCATTGACATGAAAAGTACATTTATAGTCACTCATA
65 TGCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
** * * * * * *
19456238 ATTTCGAAGGCCCTATTACCCACTTTAAATGGTTTTATAACT
130 CCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* * * * * *
19456280 TTATAAATGATTTTGAACTGAATTCTTTTTCATTTATGGTTAAAACAGATCATAATTGAATGTTC
1 TTATAAATGATTTTAAATTAAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGTTT
* * * * * * * * *
19456345 ACATTGGGAAACATGAAGTGAAAGCCGTCCATTCACAAGAAAACTCCATTTATAGTCGCCCACGC
66 GCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
* *** * * * *
19456410 CTTCTAAATAATTGTTTCACGCTTTTAAATGGTTTTAT-AGT
131 CTTCGAAAGCCTTGTTACTCGC-TTTAAGTGGTTTTATAACT
* * * ** * *
19456451 CTTATAAATTATTTT-GA-TACAACATTTTTTTCATTTTTTCTTAAAACACATCATAATTGCATG
1 -TTATAAATGATTTTAAATTA-AA-TTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGAATG
* * * * * *
19456514 TTGGCATTGGGAAACGTGTAGCGAAAGCCACCCATTGACAAGAAAAATTCTATTTCTAGTCACTC
63 TTTGCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAG-AAAAGTCCATTTATAGTCACTC
* ** * *
19456579 ATGCCTTCGAATGCCTTGTCT-CTCATTTTAAGTGGTTTTAAAACA
127 ATGCCTTCGAAAGCCTTGT-TACTCGCTTTAAGTGGTTTTATAACT
* * * * * * *
19456624 TTATAAAATTG-TTTTAAATTGAA-TTTGTTTC-TTTTTTGTTAAAAAAGATGATAATTGGACGT
1 TTAT-AAA-TGATTTTAAATTAAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGT
**** ** * * *
19456686 TTGCATCAATAAA-GTGAAATGAAAGTCATCCATTGATAAGAGAAGTCCATTTATAGTCACTCAT
64 TTGCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAT
* * * * *
19456750 GCCTTTGAAAGCCTAGTTACTTGGTTTAAGTTGTTTTATAACT
129 GCCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* *
19456793 TTATAAATGATTTTAAATTAAATTTTTTTACATTTTTGGTTAAAACATA-CTATAATTGAATGTT
1 TTATAAATGATTTTAAATTAAATTTTTTTTCATTTTTGGTTAAAACAGATC-ATAATTGAATGTT
* * * * ** * *
19456857 CGCATTGGGGAACGTGAAGCGAAAGTCATACATTGGTAAAAAAAGTCCAATTATAGTCACTCATG
65 TGCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * *
19456922 CCTTCGAAGGCCTTGTTACTCACTTTAAATGGTTTTTTAA-T
130 CCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* * * * * *
19456963 TTATAAATGATTTTGAACT-AATTTTTTTTC-TTTTCTAGTTAAAACATATTATAATTGAATGAT
1 TTATAAATGATTTTAAATTAAATTTTTTTTCATTTT-TGGTTAAAACAGATCATAATTGAATGTT
* * * * * *
19457026 CGCATAGGGAAACGTGTAGCTAAAGCCATCCATTAACAAGAAAAGTCCATTCATAGTCACTCAT-
65 TGCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * *
19457090 ACTGTCGAAGGCCTTGTTACTCACTTTAAATGATTTTATAACT
130 CCT-TCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* * * * * *
19457133 TTATAAATAATTCTAAACTAATTTTTTTTTCATTTTTAGTTAAAACAAATCATAATTGAATGTTT
1 TTATAAATGATTTTAAATTAAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGTTT
* * * * * *
19457198 GCATTGGGAAACATGAAGCAAAAGCCATCCATTCAAAAGAAAAGTCCATATATTGTCACTCATGC
66 GCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
* * * * ** * *
19457263 CTTTGAATGCCTTCTCACTCATTTTGAGTGGTTATATAACT
131 CTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* * * *
19457304 TTATAAATCATTTTAAATTGAAAATTTTTTTCATTTTTGGTTAAAACAGATCATCATTGGATGTT
1 TTATAAATGATTTTAAATT-AAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGTT
* * * * * *
19457369 TGCATTGAGAAACATGAAGCAAAAACCATCCATTGACAAGAAAAGTTCATTTATAATCACTCATG
65 TGCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * *
19457434 CCTTCGAATGCCTTGTTAGTCGCTTTAAGTAGTTTTATAACT
130 CCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* * * * * * * * *
19457476 TTTTAAATGA-TTTAAAGTGAATTTTCTTTCATTTCTAGCTAAAACATATCATAATT-AACTATT
1 TTATAAATGATTTTAAATTAAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGAA-TGTT
** * * * * * * **
19457539 CACAATGGAAAACATGAAGTGAAAGCTATCCATTGACAAGAAAAGTCCCTTTATAGTTGCTCATG
65 TGCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * *
19457604 CATTCGAAAGCCTAGTTACTTGCTTTAAATGGTTTTAT-AGT
130 CCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* * * * * *
19457645 CTTATAAATTA-TTTAAATCAAAATTTTTTTT-ATTTTTTGTTAAAACACATCATAATTGGATGC
1 -TTATAAATGATTTTAAAT-TAAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGT
* * ** * * ** *** *
19457708 TTGCATTGGGAAATGTGTAGAAAAAGCCACCCATTGATAAGAAAAGTTTATTTATAAAAACTTAT
64 TTGCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAT
* * * ** * **
19457773 GCCTTCGAATGTCTTGTCACTCATTTTAGGTAATTTTATAACT
129 GCCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* * * * * *
19457816 TTAGAAAATGATTTTAAATTGAATCTTTTGTCATTTTTGGTTAAAACGGATCATAATTGGATGTT
1 TTA-TAAATGATTTTAAATTAAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGTT
* * * * * * * * *
19457881 TTCAATGAGAAACGTGAAGCAAAAGTCATCCATTGATAAAAAAAATCCATTTATAGTCATTCATG
65 TGCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * * *
19457946 CCTTCAAAAGCCTAGTTACTCACTTTTAGTTGTTTTCTAACT
130 CCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* * * *
19457988 TTATAAATGATTTTAAATTAAATTTTTTGTTTTACATTTCTAGTTAAAACAGAGCTTAATTGAAT
1 TTATAAATGATTTTAAATTAAA--TTTT-TTTT-CATTTTTGGTTAAAACAGATCATAATTGAAT
* * * ***
19458053 GTTTGAATTAGGAAATGTGAAGCGAGCCCCATCCATTGACAAGAAAAG-CTCATTTATAGTCACT
62 GTTTGCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTC-CATTTATAGTCACT
* ** * *
19458117 CATGCCTTCGAAGGCCTTGTTACTCATTTTAAATGGTTTTATGACT
126 CATGCCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* * * * * * *
19458163 TTATAAATGATTTTGAACTGATTTTTTTTTTATTTCTGGTTAAAACAGATCATAATTGAATGTAT
1 TTATAAATGATTTTAAATTAAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGTTT
* * * * * *
19458228 GCATTGGGAAACATGAAGCGAAAGCCATCCATTAACAAAAAAAATCCAGTTATTGT-AGCTCATG
66 GCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCA-CTCATG
* * * ** * *
19458292 CCTTTGAATGCCTTGTCACTCATTTTAGGTGGCTTTATAACT
130 CCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* * * * * *
19458334 TTATAAATCATTTTAAATTGAATTGTTTTCTCATTTTTTGTTAAAACAGATCATCATT-AGATAT
1 TTATAAATGATTTTAAATTAAATT-TTTTTTCATTTTTGGTTAAAACAGATCATAATTGA-ATGT
* ** * * * *
19458398 TCGCATCAGGAAACGCGAAGCAAAAGTCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCA-
64 TTGCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAT
* * * ** *
19458462 GCCTTCGAATGCCTTGTCAGTCATTTTAGGTGGTTTTATAACT
129 GCCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* * * *
19458505 TTATAAATTG-TTTTAAATT-GA-TTTTTTTCATTTTTGTTTAAAACAGAACATGATTGAATGTT
1 TTATAAA-TGATTTTAAATTAAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGTT
* * * * * * *
19458567 CGCATTGAGAAATGTGAGGCGAAAGCCATCCATTGACAAGAAAATTCTATTTATAGTCATTCATG
65 TGCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * *
19458632 CCAT-GAAAAGCCTTATTACTCG-TTTAAAATGGTTTTATAA-T
130 CCTTCG-AAAGCCTTGTTACTCGCTTT-AAGTGGTTTTATAACT
* * * * * * * *
19458673 CTCATTATTGATTTTAAGTTGAATTTTTTTACATTTTTGGTTAAAACATATTATAATTGAATGTT
1 -TTATAAATGATTTTAAATTAAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGTT
* * * ** * * * * *
19458738 TACCTTGGAAAACGTGAAGAAAAATCCATACATTGAAAAGAAAAGTCTATTTATAGTCACTCATA
65 TGCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * *
19458803 CCTTCAAAAGCCTTATTACTTGCTTTAAGTGGATTTATAGCCT
130 CCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATA-ACT
* * * * *
19458846 TT-TAAATGATTTTATATTGAATTTTTTTTGTATTTTTGGTTAAAACATATCGTAATTTG-ATGT
1 TTATAAATGATTTTAAATTAAATTTTTTTT-CATTTTTGGTTAAAACAGATCATAA-TTGAATGT
* * * *** * *
19458909 TTGCATTGGGAAACATAAAGCAAAAGCCATCCATTGACAAGAAAAGTCTGCTTATAGTCCCCCAT
64 TTGCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAT
* * * * *
19458974 GCCTTC-ATATGCCTTGTTACTTGATTTAAGTAGATTTATAACT
129 GCCTTCGA-AAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* * *
19459017 TT-TAGAATGATTTTAAATTGAATTTTTTTTACATTTTGGGTTAAAATAGAT-AGTAATTTG-AT
1 TTATA-AATGATTTTAAATTAAATTTTTTTT-CATTTTTGGTTAAAACAGATCA-TAA-TTGAAT
* * ** * ** *
19459079 GTTTTCGTTGACAAACATGAAGTAAAAGCCATCCATTAACAAGAAAAGTCCATTTTATAGTCACT
62 GTTTGCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCA-TTTATAGTCACT
** * * * * ***
19459144 CATGCCTTC-ATGTGCCCTATTACTTGTTTTAAGTGCACTTATAACT
126 CATGCCTTCGA-AAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* ** *
19459190 TTTTAAATGATTTTAAATTGATTTTTTTTTTGCATTTTTGGTTAAAACATATCATAATTTGATAT
1 TTATAAATGATTTTAAATT-AAATTTTTTTT-CATTTTTGGTTAAAACAGATCATAA-TTGA-AT
* * * *
19459255 -TTT-CATTGGGAAACGTGAAGTGAAAGCCATCCATTAACAAGAAAAGTCTAGTTATAGTCACTC
62 GTTTGCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTC
* * * * * *
19459318 ATACCTTTGAAAGCCATGTTATTCTCTTTAAGTGGATTTATAACT
127 ATGCCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* * * *
19459363 TTAGAAATGATTTTAAATTAATTTTTTTTTCATTTTTGGTTAAAACCAAATCATAACTTG-TTGT
1 TTATAAATGATTTTAAATTAAATTTTTTTTCATTTTTGGTTAAAA-CAGATCATAA-TTGAATGT
* ** * ** * *
19459427 TTGCATCGAAAAACGTTAAGAAAAAGCCATCCATTGACAAGAAAAGTCCAATTATAGTAACTCA-
64 TTGCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAT
* *
19459491 ----T--AAAGCCTTGTTACTCGCTTTAATTGGATTTATAACT
129 GCCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* * * * * * *
19459528 TTTTAAATGATTTTAAATTGAATTTCTTTTACATTTTTGGTTAAAATAGATCGTTATTTG-ATAT
1 TTATAAATGATTTTAAATTAAATTT-TTTTTCATTTTTGGTTAAAACAGATC-ATAATTGAATGT
* * * * * * *
19459592 TTGCATTGGCAAACATGAAACAAAAGTCATCCATTGACAAGAAAAGTCTATTTATAGTCACTAAT
64 TTGCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAT
* * *
19459657 ACCTTTC-AAAGCCTAT-TCACTCACTTT-AGATGGTTTTATAA-T
129 GCC-TTCGAAAGCCT-TGTTACTCGCTTTAAG-TGGTTTTATAACT
* * * *
19459699 CTTATAAATCATTTCAAATTGAAA--TTTTTTCATTTTTGGTTAAAATA-ATCATAATTTG-TTG
1 -TTATAAATGATTTTAAATT-AAATTTTTTTTCATTTTTGGTTAAAACAGATCATAA-TTGAATG
* * * *
19459760 TTTGCATTGGGAAACGTGAAGCAAAAACCATCCATTGATAAGAAAAGTCTATTTATAGTCACTCA
63 TTTGCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCA
* * ** * ** *
19459825 TACCCTCGAAAGCCTAATTAGTCATTTTAAATGGTTTTATAA-T
128 TGCCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* * * * *
19459868 CATATAAATGATTTTAAAATTGAA--TTTTCTCTTTTTTGGTTAAAATAGATCATAATTTG-ATG
1 -TTATAAATGATTTT-AAATTAAATTTTTTTTCATTTTTGGTTAAAACAGATCATAA-TTGAATG
* * ** * * * * *
19459930 TTTGCATCT-GAAAACATGAAGAAAAAGCAATACATTAACAAGAAAAGTCTATTTATAGTCACTT
63 TTTGCAT-TGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTC
* * *
19459994 ATGCCTTCGAAAGCCTTATTACTTGCTTTAAGTGGATTTATAACT
127 ATGCCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* * * * *
19460039 TTTTAAATGATTTTAAATTGATTTTGTTTTTAGATTTTTGGTTAAAACAGAACATAATTTG-ATG
1 TTATAAATGATTTTAAATTAAATTT-TTTTT-CATTTTTGGTTAAAACAGATCATAA-TTGAATG
* * *
19460103 TTTGCATTGAGAAACGTGAAGCAAAAGCCAT-CAGTTGATAAGAAAAGTCCATTTATAGTCACTC
63 TTTGCATTGGGAAACGTGAAGCGAAAGCCATCCA-TTGACAAGAAAAGTCCATTTATAGTCACTC
* * * * * *
19460167 ATGGCTTCAAAAGCCTAT-TTACTCACTTCAAATTGTTTTATAA-T
127 ATGCCTTCGAAAGCCT-TGTTACTCGCTTTAAGTGGTTTTATAACT
* * * * * * *
19460211 CTTATAAATAATTTCAAATT-CA---TTTTT--TTTTTGGTTAAAACATATTATGATTTGTTAT-
1 -TTATAAATGATTTTAAATTAAATTTTTTTTCATTTTTGGTTAAAACAGATCAT-AATTG-AATG
*** * * * *
19460269 TTT-CATCAAGAAACATGAAG-GAAAAACCATCCATTGATAAGAAAAGTCCATTTATAGTCACTA
63 TTTGCATTGGGAAACGTGAAGCG-AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTC
* * * * *
19460332 ATGCCTTCGAAAACCTAGTTAGTTC-CTTTTAAATGGTCTTATAATCT
127 ATGCCTTCGAAAGCCTTGTTA-CTCGC-TTTAAGTGGTTTTATAA-CT
* * * * *
19460379 TT-TGAATGATTTTAAGATTGAA-TTATTCTCATTTATGGTTAAAACAGATCATAATTTG-ATGT
1 TTATAAATGATTTTAA-ATTAAATTTTTTTTCATTTTTGGTTAAAACAGATCATAA-TTGAATGT
*** * * * *
19460441 TTGCATCATGAAACCTTAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCCCTCAT
64 TTGCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAT
* *
19460506 GCCTTCGAAAGCCTTATTACT-GTCTTTAAATGGTTTTATAACT
129 GCCTTCGAAAGCCTTGTTACTCG-CTTTAAGTGGTTTTATAACT
* * * * *
19460549 TTTTAAAAT-ATTTCAAAATGAATTGTTTTTTACATTTTTGGTTAAAACAGATCGTAATTTG-AT
1 TTAT-AAATGATTTTAAATTAAATT-TTTTTT-CATTTTTGGTTAAAACAGATCATAA-TTGAAT
* * * * * **
19460612 GTTTGCATTAGGAAACATGAAGAGAAAGCTATCCATTGAGAAGAAAAGTCTGTTTATAGTCACTC
62 GTTTGCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTC
* * * **
19460677 ATGCATT--AATATGCCTTGTTACTTGCTTTAAGCGAATTTATAAACT
127 ATGCCTTCGAA-A-GCCTTGTTACTCGCTTTAAGTGGTTTTAT-AACT
* * *
19460723 TT-TAAATGATTTTAAATTGAATTTTTTTTTACATTTTTAGTTAAAACGGAT-AGTAATTTG-AT
1 TTATAAATGATTTTAAATT-AAATTTTTTTT-CATTTTTGGTTAAAACAGATCA-TAA-TTGAAT
* * * *
19460785 GTTTGCATTGAGAAATGTGAAGCGAAAGCCATCCACTAACAA-AAAAGTCCATTTATAGTCACTC
62 GTTTGCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTC
* * * * **
19460849 ATGCTTTC-ATACGCCTTATTACTTGCTTTAAGTGCATTTATAACT
127 ATGCCTTCGA-AAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* * *
19460894 TTTTAAATGATTTTAAATT-AATTTGTTTTTACATTTTTGGTTAAAGCATATCATAATTTG-ATG
1 TTATAAATGATTTTAAATTAAATTT-TTTTT-CATTTTTGGTTAAAACAGATCATAA-TTGAATG
* * * * *
19460957 TTTCCATTGGGAAACGTGAAGC-ACAAGCCATCCACTGACAA-AAAAGTCTAGTTATAGTTACTC
63 TTTGCATTGGGAAACGTGAAGCGA-AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTC
* * * *
19461020 ATGCCTTTGAAAGCCTTGTTATTCTCTTTAAGTGGATTTATAACT
127 ATGCCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
** ** * * *
19461065 TTATAAATGATTTTAAATTGCA-TTTTTCCCATTTTTGGTTAAGAGCAGGTCATAACTTG-TTGT
1 TTATAAATGATTTTAAATTAAATTTTTTTTCATTTTTGGTTAA-AACAGATCATAA-TTGAATGT
** ** ** * * *
19461128 TTGCATTGAAAAACGTGAAGAAAAAGTGATCCATTGACAAGAAAAGTCCAATTATAGTAACTTAT
64 TTGCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAT
* * *
19461193 GCCTTCGAAAGCCTTGTTATTCTCTTTAAGTGGATTTATAACT
129 GCCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* * * * * * * *
19461236 TTTTAAATAATTTTAAGTTGAATTTCTTTTACATTTTTGGTTAAAACATATCGTAATTTG-ATAT
1 TTATAAATGATTTTAAATTAAATTT-TTTTTCATTTTTGGTTAAAACAGATCATAA-TTGAATGT
* ** * * * * * * *
19461300 TTACATCAGGAAACATGAAACAAAAG-CATCTATTGACAAGCAAAGTCTATTTATAGTCACTTAT
64 TTGCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAT
* *
19461364 GCCTTCGAAAGCCTTATTACTCGCTTTAAGTGGATTTATAACT
129 GCCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* * *
19461407 TTTTAAATGATTTTGAATTAAATTATTTTTTACATTTTTGGTTAAAACAGATCGTAATTTG-ATG
1 TTATAAATGATTTTAAATTAAATT-TTTTTT-CATTTTTGGTTAAAACAGATCATAA-TTGAATG
* * * * * *
19461471 TTTGCATTAGGAACCATGAAGC-AGAAGCCATCCATTGACAAGAAAAGCCCGTTTATAGTCTCTC
63 TTTGCATTGGGAAACGTGAAGCGA-AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTC
* * * * *
19461535 ATGTCTTC-ATAAACCTTGTTACTTGCTTTAAGTAGATTTATAACT
127 ATGCCTTCGA-AAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* * * * * * *
19461580 TTTTAAATGATTTTAAGTTGATTTTTTTTTACA-TTTTGGTTAAAACATATCGTAATTTAATGTT
1 TTATAAATGATTTTAAATTAAATTTTTTTT-CATTTTTGGTTAAAACAGATCATAATTGAATGTT
* * * * * * *
19461644 TGCATTGAGAAACATGAAGCAAAAGCCATCTATTGAGAAGAAAAGTCCGTTTATAGTCCCTCATG
65 TGCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * *
19461709 CCTTC-AAACGTCTTATTACTTGCTTTAAGTTGATTTATAACT
130 CCTTCGAAA-GCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* * ** *
19461751 TTTTAAATGA--TT---TTAAATTTTTTTACATTTTTATTTAAAACAGAT-AGTTATTTG-ATGT
1 TTATAAATGATTTTAAATTAAATTTTTTTTCATTTTTGGTTAAAACAGATCA--TAATTGAATGT
* * * * *
19461809 TTGCATTGAGAAACGTGAAGCAAAAGCCATCTATGGACAAGAAAAGCCCATTTATAGTCACTCAT
64 TTGCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAT
* * **
19461874 GCCTTC-ATACGCCTTGTTACTTGCTTTAAGTGCATTTATAACT
129 GCCTTCGA-AAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* * * * * **
19461917 TTTTAAATGATTTTAAATTGAATTTGTTTTACATTTTTGGTTAAAACAAATCATTATTTTATGTT
1 TTATAAATGATTTTAAATTAAATTT-TTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGTT
* * * * *
19461982 TCCATTGGGAAACATGAAGCAAAAACCATCCATTGACAAG-AAAGTCTAGTTTATAGTCACTCAT
65 TGCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCA-TTTATAGTCACTCAT
* * * * * *
19462046 GCCTTTGGAAGCCTTCTTATTCTCTTTAAGTGGATTTATAACT
129 GCCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* *
19462089 TTATAAATGATTTTAAATT-AATTTTTTTTCATTTTTGGTTAAAAGCATATCATAACTTG-TTGT
1 TTATAAATGATTTTAAATTAAATTTTTTTTCATTTTTGGTTAAAA-CAGATCATAA-TTGAATGT
* ** ** ** ** * *
19462152 TTGCATCGAAAAAAATGAA-AAAAAGCCATCCATTGACAAGAATTGTCCAATTATAGTAACTCAT
64 TTGCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAT
* ** * * *
19462216 GTCTTTAAAAGCCTTGTTACTTGTTTTAAGTGGATTTATAACT
129 GCCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
* * * *
19462259 TTTTAAATGATTTTAAATTGAATTTCTTTTACATTTTTGGTT--AATAGATCATAATTTG-ATGT
1 TTATAAATGATTTTAAATTAAATTT-TTTTTCATTTTTGGTTAAAACAGATCATAA-TTGAATGT
* * * * * * * * * * *
19462321 TTGCATCGAGAAACTTGAAACAAAAGCCATCTATTTATAAGAAAAGTCTATTTATAGTTACTAAT
64 TTGCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAT
* * * *
19462386 GCTTTCAAAAGCCTAT-TTACTCGC-TTCAGATGGTTTTATAATT
129 GCCTTCGAAAGCCT-TGTTACTCGCTTTAAG-TGGTTTTATAACT
* * * *
19462429 TTATAAATGATTTTAATTTGAATTTTTTTTTCATTTTTGGTTAAAACAGATCATAGTTTG-TTGT
1 TTATAAATGATTTTAAATT-AAATTTTTTTTCATTTTTGGTTAAAACAGATCATA-ATTGAATGT
* * * * * *
19462493 TTGCATTGAGAAGCATGCAA-TGAAAACCATCCATTGACAAAAAAAGTCCAT
64 TTGCATTGGGAAACGTG-AAGCGAAAGCCATCCATTGACAAGAAAAGTCCAT
19462544 CTAGCTTTGC
Statistics
Matches: 11059, Mismatches: 2330, Indels: 749
0.78 0.16 0.05
Matches are distributed among these distances:
157 4 0.00
158 61 0.01
159 21 0.00
160 39 0.00
161 39 0.00
162 70 0.01
163 4 0.00
164 2 0.00
165 219 0.02
166 247 0.02
167 15 0.00
168 135 0.01
169 915 0.08
170 1886 0.17
171 3780 0.34
172 2367 0.21
173 889 0.08
174 105 0.01
175 198 0.02
176 63 0.01
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.38
Consensus pattern (171 bp):
TTATAAATGATTTTAAATTAAATTTTTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGTTT
GCATTGGGAAACGTGAAGCGAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
CTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT
Found at i:19450072 original size:343 final size:340
Alignment explanation
Indices: 19448612--19462543 Score: 11027
Period size: 343 Copynumber: 40.8 Consensus size: 340
19448602 GGTCGTGACA
* * * * * * * **
19448612 TTATAAATGATTTTGAACTGAATTTTTTTCATTTCTAGTTAAAGCAGTTCATAATTGAATGCTCA
1 TTATAAATGATTTTAAATTGAATTTTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGTTTG
* * * * * * *
19448677 CTTTGAGAAACGTGAAGCTAAAGCAATCCATT-----GATAAGTCCATTTATAGTCACTTATGCC
66 CATAG-GAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCC
* * * * * * * * * * * *
19448737 GTCGAATGCCTTGTCACTCGTTTTAAGTGATTTTACAACTTTATTAATCAATTTAACTTAAATAT
130 TTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTATAAATGATTTTAAATTGAATTT
* * * * *** *
19448802 TTTTACATTTCTGGTTAAAACATATCATAATGGAATGTTCGCATCAAGAAACGTGAAGCGAAAGC
195 TTTTTCATTTCTGGTTAAAACAGATCATAATTGAATGTTTGCATTGGGAAACGTGAAGCAAAAGC
* * * ** * * *
19448867 CATCTATTTACAAGAAAAGTTCATTTATAGTCACTCATGCCTTTGAATGCCTTCTCACTCGTTTT
260 CATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAATGCCTTGTTACTCGCTTT
*
19448932 GAGTGGTTTTATAACT
325 AAGTGGTTTTATAACT
* * * *
19448948 TTATAAATCATTTTAAATTGAATGTTTTTTCATATTTGGTTAAAACAGCTCATCATTTG-ATGTT
1 TTATAAATGATTTTAAATTGAAT-TTTTTTCATTTTTGGTTAAAACAGATCAT-AATTGAATGTT
* * * * ** * *
19449012 TGCATTGAGAACCGTGAAGCGAAAGTGATCCATTTACAAGAAAAGTTCATTTATAGTCACTCATG
64 TGCATAG-GAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * *
19449077 CCTTTGAAGGCCTTGCTACAT-GCTTTAAGTGATTTTTTAACTTTATAAATGATTTTAAATTGAA
128 CCTTCGAAAGCCTTGTTAC-TCGCTTTAAGTGGTTTTATAACTTTATAAATGATTTTAAATTGAA
* ** * * * * * **
19449141 CTTTCATTCATTTCTAGCTAAAACAGATCATAATTCAATGCTTGCATTGGGAAACATGAAGTGAA
192 TTTTTTTTCATTTCTGGTTAAAACAGATCATAATTGAATGTTTGCATTGGGAAACGTGAAGCAAA
* *
19449206 AGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAA-GCCTAGTTACTTG
257 AGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTC-AAATGCCTTGTTACTCG
* * **
19449270 CTTTAAATGGTTGTAT-GGT
321 CTTTAAGTGGTTTTATAACT
* * * * * * * *
19449289 CTTATAAATTATTTT-AATTCAAATTTTTTCATTCATT-CTTAAAACACATCATAATTGGATCTT
1 -TTATAAATGATTTTAAATTGAATTTTTTTCATT-TTTGGTTAAAACAGATCATAATTGAATGTT
* * * * * * *
19449352 TGCATCGAGAAACGTGTAGAAAAAGCCACCCATTGACAAGAAAAGTCTATTTATAGTCACTTATG
64 TGCATAG-GAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * * * * *
19449417 CCTTTGAATGCTTTGTGACTTGTTTTAAGTGATTTTATAACTTTATAAAATGATTTTAAACTGAA
128 CCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTAT-AAATGATTTTAAATTGAA
* * * * ** * **
19449482 TTTTTTTGCATTTCTGGTTAAAACTGATCAGAATTG-ATGTTCGCATCAGGAAATGTGAAGTGAA
192 TTTTTTTTCATTTCTGGTTAAAACAGATCATAATTGAATGTTTGCATTGGGAAACGTGAAGCAAA
* * * * * *
19449546 AGCCATCGATTAACATGAAAAGTCCATTTATAAG-CACTCATGCCTTTGAAA-GCCCTGTTGCTC
257 AGCCATCCATTGACAAGAAAAGTCCATTTAT-AGTCACTCATGCC-TTCAAATGCCTTGTTACTC
* * *
19449609 ACTTTAAATAGTTTTATAACT
320 GCTTTAAGTGGTTTTATAACT
* * * ** * * * * *
19449630 TTATAAATGATTTTGAACTGATTTCTTTTTTGTTTCTAGCTAAACCAGATCATAATTGAATGTTC
1 TTATAAATGATTTTAAATTGAATT-TTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGTTT
* * * *
19449695 GCATTAGGAAA-AGAGAAGCGAAAGCCACCCATTGACAAGAAAAGTCCATTTCTAGTCACTCATG
65 GCA-TAGGAAACA-TGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * *
19449759 CCTTCGAATGCCATGTTACTCACTTTAAGTTGTTTTATAACTTTATAAATGATTTTAAATTGAAT
128 CCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTATAAATGATTTTAAATTGAAT
* * ** * * *
19449824 TTTTTTTACATTTCTAGTTAAAACATATCATAATTGAATGTTCACATAGGGAAACATGAAGCGAA
193 TTTTTTT-CATTTCTGGTTAAAACAGATCATAATTGAATGTTTGCATTGGGAAACGTGAAGCAAA
* * ** * * * **
19449889 AGCCATACATTGGCAAGAAAAGTCCATTTATAGTTGCTCATGCCTTTAAAGGCCTTGGTACTTAC
257 AGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAATGCCTTGTTACTCGC
* *
19449954 TTTAAATGGTTTTTTAACT
322 TTTAAGTGGTTTTATAACT
* * * * * * *
19449973 TTATAAATGATTTTAAACTAAATGTTTTTTTATTTCTGGTTAAAATATAGCATAATTGAATGTTT
1 TTATAAATGATTTTAAATTGAAT-TTTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGTTT
* *
19450038 GCATAGGCAAACATAAAGCTAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG-
65 GCATAGG-AAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
* *
19450102 CTATCGAAGGCCTTGTTACTCGCTTTAAATGGTTTTATAACTTTATAAATGATTTTAAACTT-AA
129 CT-TCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTATAAATGATTTTAAA-TTGAA
* * * *** * *
19450166 -TTTTTTCCATTTCTAGTTAAAACTA-ATCATAATTGAATATTTGCATCAAGAAATGTGAAGCGA
192 TTTTTTTTCATTTCTGGTTAAAAC-AGATCATAATTGAATGTTTGCATTGGGAAACGTGAAGCAA
* * * * *
19450229 AAGCCATCCATTGATATA-AAAAGTCCATTTATAGTCACTCATGTCTTCGAAGGCCCTGTTACTC
256 AAGCCATCCATTGACA-AGAAAAGTCCATTTATAGTCACTCATGCCTTCAAATGCCTTGTTACTC
* *
19450293 GCTTTAAATGATTTTATAACT
320 GCTTTAAGTGGTTTTATAACT
* ** * * * * *
19450314 TTATAAATGATTTTGAACAGAATTCTTTTTCGTTTCTAGTTAAAACAGATTATAATTGAATGTTC
1 TTATAAATGATTTTAAATTGAATT-TTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGTTT
* * * * * * * *
19450379 GCTTCAAGAAACGTGAAGCAAAAGCCATCGATTGACAAGAAAACTCTATTTATAATCGCTCATGC
65 GCAT-AGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
* * * * * *** * * * *
19450444 CCTCGCAATCCTTTTTACAT-GCCTTAA-ACATTTTAT-AGTCTTAT-AATTATTTT-GATTCAA
129 CTTCGAAAGCCTTGTTAC-TCGCTTTAAGTGGTTTTATAACT-TTATAAATGATTTTAAATTGAA
* * *
19450504 TTTTTTTTTCATTAT-TTGTTAAAACACATCATAATT-ACATGTTTGCATTAGGAAACGT-ATAG
192 -TTTTTTTTCATT-TCTGGTTAAAACAGATCATAATTGA-ATGTTTGCATTGGGAAACGTGA-AG
* * * * * ** *
19450566 CAAAAGCCACCCATTGACAAGAAAAGTCTATTTCTAGTCATTCATCCCTTTGAATGCCTTGTCAC
253 CAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAATGCCTTGTTAC
* **
19450631 GCATTTTAAGTGGTTTTATAACT
318 TCGCTTTAAGTGGTTTTATAACT
* * * *
19450654 TTATAAAAAAT-ATTTTAAATTGAATTTTTTTCATTTTTTGTTAAAA-AGTATGATAATTGGACG
1 TTAT---AAATGATTTTAAATTGAATTTTTTTCATTTTTGGTTAAAACAG-ATCATAATTGAATG
* *** *
19450717 TTTGCATCGAGG-AACGTGCAATG--AAAGTTGTCCATTGACAAAAAAAGTCCATTTATAGTCAC
62 TTTGCAT--AGGAAACATG-AA-GCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCAC
* * * * *
19450779 TCATACCTTTGAAAGCCTAGTTATTCGCTTTAAGTTGTTTTATAACTTTATAAATGATTTTAAAT
123 TCATGCCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTATAAATGATTTTAAAT
** * * * * **
19450844 TGAATTTTTTTAGATTTCTAGTTAAAACATATCATAATTGAATGTTCGCATTGGGAAAAGCAAAG
188 TGAATTTTTTTTCATTTCTGGTTAAAACAGATCATAATTGAATGTTTGCATTGGGAAACGTGAAG
* * * * ** * *
19450909 CAAAAGCCATCCATTGA-AAAAAAAGGTCCATTTCTAGTCGCTCATACCTTTGAATGCCTTGCTG
253 CAAAAGCCATCCATTGACAAGAAAA-GTCCATTTATAGTCACTCATGCCTTCAAATGCCTTGTTA
* * *
19450973 CTTGCTTTAAGTTGTTTTACAACT
317 CTCGCTTTAAGTGGTTTTATAACT
* * * *
19450997 TTATAAATGATTTTAAATTGAATTTTTTTTACATTTCTAGTTAAAACATATCATAATTAAATGTT
1 TTATAAATGATTTTAAATTGAA-TTTTTTT-CATTTTTGGTTAAAACAGATCATAATTGAATGTT
* * * * *
19451062 TGCATAGGAAA-ATGTGAAGCGAATGCTATACATTGGCAAGAAAAGTCCATTTATAGTCACTCAT
64 TGCATAGGAAACA--TGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAT
* * * * * * *
19451126 GCCTTCGAAGGCCTTGTTACTTGCTTTAAATGGTTTTTTAACTTTATAAATGATTTTGAACTAAA
127 GCCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTATAAATGATTTTAAATTGAA
** * * * ** * * * **
19451191 TTTTTAATCATTTCTAGCTAAAACAGATCATAATTCAATGTTCACAATGGAAAACATGAAGCGCA
192 TTTTTTTTCATTTCTGGTTAAAACAGATCATAATTGAATGTTTGCATTGGGAAACGTGAAGCAAA
* * ** * ** ** *
19451256 AGCCATCCATTGACAAGGAAAGTCCCTTTATAGTTGCTCATGCGTTCAAAAACCTAATTACTTGC
257 AGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAATGCCTTGTTACTCGC
* **
19451321 TTTAAATGGTTTTATAGTT
322 TTTAAGTGGTTTTATAACT
* ** * * * *
19451340 TTATAAATTATTTTAAATCAAAATTTTTTAATTCTTT-GTTAAAACACATCATAATTGGATGTTT
1 TTATAAATGATTTTAAATTGAATTTTTTTCATT-TTTGGTTAAAACAGATCATAATTGAATGTTT
* * * * * ** *
19451404 GCATTGGAAAACGTGTAATG--AAAGCTACCCATTGATAAGAAAAGTTTATTTATAATCACGT-A
65 GCATAGG-AAACATG-AA-GCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCAC-TCA
* * * ** * ** * *
19451466 TGCCTTTGAATGCCTTGTCACTCATTTTAGGTAATTTTATAACCTTAGTAAATGATTTTAAACTG
126 TGCCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTA-TAAATGATTTTAAATTG
* * * * *
19451531 AATTTTTTTTCATCT-TGGTTAAAACGGATCATAATTGGATGTTTGCATCGAGAAACGTGAAGCA
190 AATTTTTTTTCATTTCTGGTTAAAACAGATCATAATTGAATGTTTGCATTGGGAAACGTGAAGCA
* * * * * * * *
19451595 AAAGTCATCCATTGATAAAAAACAAAAGTCCATTTATAGTCATTCAAGACTTCAAAAGCCTAGTT
255 AAAGCCATCCATTG----ACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAATGCCTTGTT
* * * *
19451660 ACTTGCTTTTAGTTGTTTTTCTAACT
316 ACTCGCTTTAAG-TGGTTTTATAACT
* * * * *
19451686 TTATAAATGATTTTAACTTGAATTTTTTTACATTTCTGGTTAAAACA-AGGCTTAATTAAATGTT
1 TTATAAATGATTTTAAATTGAATTTTTTT-CATTTTTGGTTAAAACAGA-TCATAATTGAATGTT
* * ** *
19451750 TGCATCAGGAAACATGAAACGAGTGCCATCCATTGACAAGAAAAGTTCATTTATAGTCACTCATG
64 TGCAT-AGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * * * *
19451815 CCTTTGAAGGCCTTGTTACTTGCTTTAAATAGTTTTATGACTTTATAAATGATTTT-GATCTGAA
128 CCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTATAAATGATTTTAAAT-TGAA
* * * * * *** * **
19451879 TTGTTTTTCATTTTTGATAAAAACATATCATAATTGAATGTACACATTGGGAAACATGAAGTGAA
192 TTTTTTTTCATTTCTGGTTAAAACAGATCATAATTGAATGTTTGCATTGGGAAACGTGAAGCAAA
* * * *
19451944 AGCCATCCATTGACAAGAAAAGT-CTTGTTGTTGT-AGCTCATGCCTTCAAATGCCTTGTCACTC
257 AGCCATCCATTGACAAGAAAAGTCCAT-TTATAGTCA-CTCATGCCTTCAAATGCCTTGTTACTC
** * *
19452007 ATTTTAGGTGGCTTTATAACT
320 GCTTTAAGTGGTTTTATAACT
* * * *
19452028 TTATAAATCATTTTAAATTGAATTGTTTTTTGATTTTTTGTTAAAACAGATCATCATT-ATAT-T
1 TTATAAATGATTTTAAATTGAA-T-TTTTTTCATTTTTGGTTAAAACAGATCATAATTGA-ATGT
* * *
19452091 TTCGCATCAAGAAACGTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCAGTTATAGTCACTCA
63 TT-GCAT-AGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCA
* * * *
19452156 TTCCTTC-AAAGGCCTTGTTACTCACTTTAAATGGTTATATAACTTTATAAATGATTTTAAATTG
126 TGCCTTCGAAA-GCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTATAAATGATTTTAAATTG
* * * * * * ** * **
19452220 AATTTTCTTTCATTCCTAGCTAAAACATATCATAATTCAATACTTGCATTTGGAAACGTGAAGTG
190 AATTTTTTTTCATTTCTGGTTAAAACAGATCATAATTGAATGTTTGCATTGGGAAACGTGAAGCA
* * * ** * *
19452285 AAAGCCATCTATTGACAATAAAAGTCTATTTATAGTCGTTCATGCCTTTGAAA-GCCTAGTTACT
255 AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCC-TTCAAATGCCTTGTTACT
* *
19452349 TGCTTTAAATGGTTTTAT-ACT
319 CGCTTTAAGTGGTTTTATAACT
* * * * * * * *
19452370 GTTATAAATTATTTTAGA-TCAATGTTTTTCATTTTTTGTTATAACACATCATAATTGGATGTTT
1 -TTATAAATGATTTTAAATTGAATTTTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGTTT
* * * *
19452434 GCATTGAGAAACGTGAAGAAAAAGTCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
65 GCATAG-GAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
* * **
19452499 CTTCAAAAGCCTAGTTACTCGCTTTAAGTTATTTTATAACTTTATAAATGATTTTAAATTG-ATT
129 CTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTATAAATGATTTTAAATTGAATT
* *
19452563 TTTTTTACATTTCTGGTTAAAACAGATCATAATTAAATGTTTACATTGGGAAACGTGAAGCAAAA
194 TTTTTT-CATTTCTGGTTAAAACAGATCATAATTGAATGTTTGCATTGGGAAACGTGAAGCAAAA
** ** * *** * * *
19452628 GCCATTTATTGACAAGAAAAGTCCATCCATAGCCACTCATGCCTTTGTAGGCCTTGTCACTCACT
258 GCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAATGCCTTGTTACTCGCT
*
19452693 TTAAATGGTTTTATAACT
323 TTAAGTGGTTTTATAACT
* * * *
19452711 TTGTAAATGATTTT-GATATGAATTTCTTTCATTTCTGGTTAAAACAGATCATAATTGAATGTTT
1 TTATAAATGATTTTAAAT-TGAATTTTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGTTT
* * * *
19452775 GCATTAGGAAACGTGAAGCAAAAGCCATCGATTGATAAGAAAAGTCTATTTATAGTCACTCATGC
65 GCA-TAGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
* * * * * *
19452840 CTTCG-AAGTCCTTGTTGCTTGCTTTAAATGATTTTATAACTTTATAAATGATTTTGAACTGAAT
129 CTTCGAAAG-CCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTATAAATGATTTTAAATTGAAT
* * * * ** *
19452904 TTTTTTT-AGTTCTAGTTAAAACAGATCATAATTGGATGTTTGCATTGGGAAACGAGAAGTGAAG
193 TTTTTTTCATTTCTGGTTAAAACAGATCATAATTGAATGTTTGCATTGGGAAACGTGAAGCAAAA
* * * * * * * *
19452968 GCTATCCATTCATAAGAAATGTCCATTTATAGTCACTCATGCCTTTAAATGCCTTGTCAGTCGAT
258 GCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAATGCCTTGTTACTCGCT
*
19453033 TTAGGTGGTTTTATAACT
323 TTAAGTGGTTTTATAACT
* * ** * * * * *
19453051 TTATAAATCATTTTAAATTGATTTTTTTTCATTTTTATTTAAAATAAAACATGATTGAATGTTCG
1 TTATAAATGATTTTAAATTGAATTTTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGTTTG
* * ** *
19453116 CATCAAGAAACATG-AGGAGAAAGCCATCCATTGACAAGAAAAGTTTATTTATAGTCACTCATGT
66 CAT-AGGAAACATGAAGCA-AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
* * * * * * * ***
19453180 CATCGAAGGCCTTATTACTCACTTTAAATGGTTTTATAACTTTATTAATGATTTTGAGCAGAATT
129 CTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTATAAATGATTTTAAATTGAATT
* ** * * * *
19453245 GTTTTTTCATTTTTGGTTAAAAGCTTATCATAATTGAATGTTCGCTTTGGGAAACATGAAGCGAA
194 -TTTTTTCATTTCTGGTTAAAA-CAGATCATAATTGAATGTTTGCATTGGGAAACGTGAAGCAAA
* * * * **
19453310 AGCCATCCATTCACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAATGCTTTGTCACTCAT
257 AGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAATGCCTTGTTACTCGC
*
19453375 TTTGAGTGGTTTTATAACT
322 TTTAAGTGGTTTTATAACT
* * *
19453394 TTATAAATTAATTTAACTTGAATTTTTTTTACATTTTTGGTTAAAACAGATCATAATTGAATGTT
1 TTATAAATGATTTTAAATTGAA-TTTTTTT-CATTTTTGGTTAAAACAGATCATAATTGAATGTT
** * * * * * *
19453459 CACATCAAGAAATATGAAGCGAAAGTCATCCATTGAAAAGAAAAGTCCATTTATAGTCACTTATG
64 TGCAT-AGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* *
19453524 CCTTCGAAGGCCTTGTTACTCGCTTTAAGTGG-TTTATAACTTTGTAAATGATTTTAAATTGAAT
128 CCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTATAAATGATTTTAAATTGAAT
* * * ** * *
19453588 TTTCTTTCATTTCTGGCTAAAACAGATCATAATTCAATGTTCACATTGGGAAATGTCAAGCAAAA
193 TTTTTTTCATTTCTGGTTAAAACAGATCATAATTGAATGTTTGCATTGGGAAACGTGAAGCAAAA
* * * ** *
19453653 GCCATCCATTGACAAG-AAAGTCCATTTATAGGCATTAATGCCTTCGAAA-GCCAAGTTACTTGC
258 GCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTC-AAATGCCTTGTTACTCGC
*
19453716 TTTAAGTTGTTTTATAACT
322 TTTAAGTGGTTTTATAACT
* * *
19453735 TTATAAATGATTTTAAATTGAATTTTTTTACATTTTTGGTTAAAACAGATCATGATCGAATGTTC
1 TTATAAATGATTTTAAATTGAATTTTTTT-CATTTTTGGTTAAAACAGATCATAATTGAATGTTT
* * * * *
19453800 GCATTGAGAAACATGAAGCGAAAGCCATCCATTGACAAGCAAAGTCCATTTATAGTCCCTCATAC
65 GCATAG-GAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
* * *** * * * * * * ** *
19453865 TTTTGAAAGCCTTGTTACTTATTTTAAATGGTTTTTTTAGTCCTATAAATGATTTTAGATCCAAA
129 CTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT-TTATAAATGATTTTAAATTGAAT
* * * * * * * * **** * * *
19453930 TTTTTCTCATTTTTGTTTTAAAGCATATCATAGTTGGATGTTCGCATCCATAAACATGTAGCGAA
193 TTTTTTTCATTTCTG-GTTAAAACAGATCATAATTGAATGTTTGCATTGGGAAACGTGAAGCAAA
* * * * * *
19453995 AGCCACCCATTGATAAGAAAAGTCTATTTATAGTCACTCATGCCTTCAAATGCCTTATCACTC-A
257 AGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAATGCCTTGTTACTCGC
19454059 TTGTAAGTGGTTTTATAACT
322 TT-TAAGTGGTTTTATAACT
* * * * *
19454079 TTTTAAAATTATTTTAAATTGATTTGTTTTTCATTTTTGGTTAAAATAGAACATAATTGAATGTT
1 TTAT-AAATGATTTTAAATTGAATT-TTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGTT
** * * * * * * * *
19454144 TGCATTAGGAAATGTAAAGCGAAAGCCATCCATTTACAATAAAAGTTCATTT-TTGTCACCCATA
64 TGCA-TAGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * * *
19454208 TCTTCGAAAGCCTAGTTACTCACTTTAAGTTGTTTTATAACTTTATAAATGATTTTGAACTGAAT
128 CCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTATAAATGATTTTAAATTGAAT
* * * * * **
19454273 TTTTTTT-ATATCTGGTTAAAACGGATCATAATTGAATGTTCGCATAGGAAAACACGAAGCAAAA
193 TTTTTTTCATTTCTGGTTAAAACAGATCATAATTGAATGTTTGCATTGGGAAACGTGAAGCAAAA
* * * * * * *
19454337 GTCATCCCTTGACAAGAAAAGTCCATTTTTAGTGACTCATACCTTCGAAGGCCTTGTTACTCGCT
258 GCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAATGCCTTGTTACTCGCT
* *
19454402 TTAAATAGTTTTATAACT
323 TTAAGTGGTTTTATAACT
* ** * * * * *
19454420 CTATAAACCATTTTAAATTAAATGTTTTCTCAGTTTTGGTTAAAACAGATCATCATTGGATGTTT
1 TTATAAATGATTTTAAATTGAAT-TTTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGTTT
* * * *
19454485 GCATGAAGAAACGTGAAGCAAAAGCCATCCATTGACTAGAAAAGTCCATTTATAGTC-CGTCATA
65 GCAT-AGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCAC-TCATG
*
19454549 CCTT-TAAAGGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTATAAATGATTTTAAATTGAA
128 CCTTCGAAA-GCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTATAAATGATTTTAAATTGAA
* * ** * * * * **
19454613 TTTTCTTTCATTTCTAGCAAAAACAGATCCTAATTCAATGTTTGCATTAGGAAATGTGAAGTGAA
192 TTTTTTTTCATTTCTGGTTAAAACAGATCATAATTGAATGTTTGCATTGGGAAACGTGAAGCAAA
* * * * ** * *
19454678 AGCTATCCATTGACAATAAAAGTCTATTTAAAGTTGCTCATGCCTTCGAGAGTG--TAGTTACTC
257 AGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTC-A-AATGCCTTGTTACTC
* *
19454741 GCTTTAAATGGTTTTATTA-T
320 GCTTTAAGTGGTTTTATAACT
* * * * * * *
19454761 CTTATAAATTATTTTAGA-TCAATTTTTTTTCATTTTTTGTTAAACCACATCATAATTGGATGTT
1 -TTATAAATGATTTTAAATTGAA-TTTTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGTT
** * * ** * * * * * *
19454825 TGTTTCAAGAAACATGTAGTGAAAGCTA-CCTATTAACAAGAAAAGTCTATTTAGAGCCACACAT
64 TGCAT-AGGAAACATGAAGCAAAAGCCATCC-ATTGACAAGAAAAGTCCATTTATAGTCACTCAT
* * * * * ** **
19454889 GCTTTTGACTA-CCCTGTCACTCATTTTAAGTGGTTTTATTTCTTTATAAAATGATTTTAAATTG
127 GCCTTCGA-AAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTAT-AAATGATTTTAAATTG
** ** * * * *
19454953 AATTGCTTTTCATTGT-TGGTTAAAAGGGATCACAATTGGATGTTTGTATTGCGAAACGTGAAGC
190 AATTTTTTTTCATT-TCTGGTTAAAACAGATCATAATTGAATGTTTGCATTGGGAAACGTGAAGC
* * * *
19455017 GAAATCCATCCATTGACAAGAAAAGTCCATTTATAGTCACGCATGCCTTCAAAGGCCTTGTTACT
254 AAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAATGCCTTGTTACT
*
19455082 CGCTTTAAATGGTTTTATAACT
319 CGCTTTAAGTGGTTTTATAACT
* * * * * * * *
19455104 TTATAAATAATTTTGAACTGAATTGTTTTGCATTTCTAGTTAAAACATATCATAATTGAATGTTC
1 TTATAAATGATTTTAAATTGAATT-TTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGTTT
* * * * * *
19455169 GCATTGGGAAACTTGAAGCAAAAGCAATGCATTGACAAGAGAAGTCCATTGATAGTCACTCATGC
65 GCA-TAGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
* * * * * * *
19455234 CTTCGAAGGCCTTGTGACTTGCTTTAAATGGTTTTATAA-TGTTATAAATGATTTTGAACTAAAT
129 CTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT-TTATAAATGATTTTAAATTGAA-
* * * * * * * * **
19455298 TTTTTTTTCAATTCTAGTTAAAACAGATCATCATTGAATGCTCGCTTTGGGAAATGTGATGTGAA
192 TTTTTTTTCATTTCTGGTTAAAACAGATCATAATTGAATGTTTGCATTGGGAAACGTGAAGCAAA
* * * * **
19455363 AGCCATCCATTGACAAGAAAAGTCTATTTATAATCACTCATGCCTTTAAATGCCTTGTCACTCAT
257 AGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAATGCCTTGTTACTCGC
*
19455428 TTTAAGTGATTTTATAACT
322 TTTAAGTGGTTTTATAACT
* * *
19455447 TTATAAATCGA-TTTAACTTGATTTTTTTTACATTTCTGGTTAAAACAGATCATAATTGAATGTT
1 TTATAAAT-GATTTTAAATTGAATTTTTTT-CATTTTTGGTTAAAACAGATCATAATTGAATGTT
* * * * ** ** * * *
19455511 CGCATCAGAAAATATAAAGTGAAAGCCATTTATTCACAAGAAAAGTCCATTTATAGTCAGTCATA
64 TGCAT-AGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * *
19455576 CCTTC-AAATGCCTT-TTCACTCGTTTTGAGTGGTTTTATAACTTTATAAATCATTTTAAATTGA
128 CCTTCGAAA-GCCTTGTT-ACTCGCTTTAAGTGGTTTTATAACTTTATAAATGATTTTAAATTGA
* * * * * *** * * **
19455639 ATATTTTTTCATTTTTGGTTAAAACAGCTCATCATTGGATGTTTGCATCAAGAAACATTAAGTGA
191 ATTTTTTTTCATTTCTGGTTAAAACAGATCATAATTGAATGTTTGCATTGGGAAACGTGAAGCAA
* * * * * * *
19455704 AAGTCATCCATTTACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCAAAGGCCTTGCTGCTCA
256 AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAATGCCTTGTTACTCG
*
19455769 CTTTAAATGGTTTTATAACT
321 CTTTAAGTGGTTTTATAACT
* * * * * * *
19455789 TTATAAATGATTTTAAATTGAACTTTCTTTCATTTCTAGCTAAAACAGATTATAATTCAATGTTC
1 TTATAAATGATTTTAAATTGAA-TTTTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGTTT
* * * ** * * **
19455854 ACATCCGGAAACAAGAAGTGAAAGCCATCCATTGACAACAAAAGTCCATCTATAGTCGTTCATGC
65 GCAT-AGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
* * ** * *
19455919 CTTCGAAAG-CTTAGTTACTTGCTTTAAATGGTTTTAT-GGTCTTATAAATTATTTT-AATTCAA
129 CTTCGAAAGCCTT-GTTACTCGCTTTAAGTGGTTTTATAACT-TTATAAATGATTTTAAATTGAA
* * * * * *
19455981 -----TTT--TTT-T--TTAAAACACATCATAATTGGATGTTTGCA-TCGAAAACAT-TAGCAAA
192 TTTTTTTTCATTTCTGGTTAAAACAGATCATAATTGAATGTTTGCATTGGGAAACGTGAAGCAAA
* * * * * * * * **
19456034 AGCCACCCATAGACTAGAAAAGTCTATTTATAGTAAC-CTATGCATTTAAATGCCTTGTGACTTA
257 AGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTC-ATGCCTTCAAATGCCTTGTTACTCG
*
19456098 TTTTAAGTGGTTTTATAACT
321 CTTTAAGTGGTTTTATAACT
* * *
19456118 TTAAAAAATGATTTTAAACTGAATCTTTTTACATTTTTGGTT-------A--A-AATTGAATGTT
1 TT-ATAAATGATTTTAAATTGAAT-TTTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGTT
* * ** * * * * *
19456173 CGGATCAGGAAATGTGAAGCGAAAGCTATCCATTGACATGAAAAGTACATTTATAGTCACTCATA
64 TGCAT-AGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
** * * * * * * * *
19456238 ATTTCGAAGGCCCTATTACCCACTTTAAATGGTTTTATAACTTTATAAATGATTTTGAACTGAAT
128 CCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTATAAATGATTTTAAATTGAAT
* * ** * **
19456303 TCTTTTTCATTTATGGTTAAAACAGATCATAATTGAATGTTCACATTGGGAAACATGAAGTGAAA
193 TTTTTTTCATTTCTGGTTAAAACAGATCATAATTGAATGTTTGCATTGGGAAACGTGAAGCAAAA
* * * * * * ** * *
19456368 GCCGTCCATTCACAAGAAAACTCCATTTATAGTCGCCCACGCCTTCTAAAT-AATTGTTTCACGC
258 GCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTC-AAATGCCTTGTTACTCGC
* *
19456432 TTTTAAATGGTTTTAT-AGT
322 -TTTAAGTGGTTTTATAACT
* * ** ** * *
19456451 CTTATAAATTATTTT-GATACAACATTTTTTTCATTTTTTCTTAAAACACATCATAATTGCATGT
1 -TTATAAATGATTTTAAAT-TGA-ATTTTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGT
* * * * * * * * *
19456515 TGGCATTGGGAAACGTGTAGCGAAAGCCACCCATTGACAAGAAAAATTCTATTTCTAGTCACTCA
63 TTGCA-TAGGAAACATGAAGCAAAAGCCATCCATTGACAAG-AAAAGTCCATTTATAGTCACTCA
* ** * *
19456580 TGCCTTCGAATGCCTTGTCT-CTCATTTTAAGTGGTTTTAAAACATTATAAAATTG-TTTTAAAT
126 TGCCTTCGAAAGCCTTGT-TACTCGCTTTAAGTGGTTTTATAACTTTAT-AAA-TGATTTTAAAT
* * * * * * * **** *
19456643 TGAA-TTTGTTTC-TTTTTTGTTAAAAAAGATGATAATTGGACGTTTGCATCAATAAA-GTGAAA
188 TGAATTTTTTTTCATTTCTGGTTAAAACAGATCATAATTGAATGTTTGCATTGGGAAACGTGAAG
** * * * * *
19456705 TGAAAGTCATCCATTGATAAGAGAAGTCCATTTATAGTCACTCATGCCTTTGAAA-GCCTAGTTA
253 CAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCC-TTCAAATGCCTTGTTA
* * *
19456769 CTTGGTTTAAGTTGTTTTATAACT
317 CTCGCTTTAAGTGGTTTTATAACT
* *
19456793 TTATAAATGATTTTAAATTAAATTTTTTTACATTTTTGGTTAAAACATA-CTATAATTGAATGTT
1 TTATAAATGATTTTAAATTGAATTTTTTT-CATTTTTGGTTAAAACAGATC-ATAATTGAATGTT
* * * * * * * ** * *
19456857 CGCATTGGGGAACGTGAAGCGAAAGTCATACATTGGTAAAAAAAGTCCAATTATAGTCACTCATG
64 TGCA-TAGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * * *
19456922 CCTTCGAAGGCCTTGTTACTCACTTTAAATGGTTTTTTAA-TTTATAAATGATTTTGAACT-AAT
128 CCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTATAAATGATTTTAAATTGAAT
* * * * * * * * *
19456985 TTTTTTTCTTTTCTAGTTAAAACATATTATAATTGAATGATCGCATAGGGAAACGTGTAGCTAAA
193 TTTTTTTCATTTCTGGTTAAAACAGATCATAATTGAATGTTTGCATTGGGAAACGTGAAGCAAAA
* * * * * *
19457050 GCCATCCATTAACAAGAAAAGTCCATTCATAGTCACTCAT-ACTGTCGAAGGCCTTGTTACTCAC
258 GCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCT-TCAAATGCCTTGTTACTCGC
* *
19457114 TTTAAATGATTTTATAACT
322 TTTAAGTGGTTTTATAACT
* * * * *
19457133 TTATAAATAATTCTAAACT-AATTTTTTTTTCATTTTTAGTTAAAACAAATCATAATTGAATGTT
1 TTATAAATGATTTTAAATTGAA--TTTTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGTT
* * * * *
19457197 TGCATTGGGAAACATGAAGCAAAAGCCATCCATTCAAAAGAAAAGTCCATATATTGTCACTCATG
64 TGCA-TAGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * ** * * *
19457262 CCTTTGAATGCCTTCTCACTCATTTTGAGTGGTTATATAACTTTATAAATCATTTTAAATTGAAA
128 CCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTATAAATGATTTTAAATTG-AA
* * * * * *
19457327 ATTTTTTTCATTTTTGGTTAAAACAGATCATCATTGGATGTTTGCATTGAGAAACATGAAGCAAA
192 TTTTTTTTCATTTCTGGTTAAAACAGATCATAATTGAATGTTTGCATTGGGAAACGTGAAGCAAA
* * * * *
19457392 AACCATCCATTGACAAGAAAAGTTCATTTATAATCACTCATGCCTTCGAATGCCTTGTTAGTCGC
257 AGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAATGCCTTGTTACTCGC
*
19457457 TTTAAGTAGTTTTATAACT
322 TTTAAGTGGTTTTATAACT
* * * * * * *
19457476 TTTTAAATGA-TTTAAAGTGAATTTTCTTTCATTTCTAGCTAAAACATATCATAATT-AACTATT
1 TTATAAATGATTTTAAATTGAATTTT-TTTCATTTTTGGTTAAAACAGATCATAATTGAA-TGTT
** ** * * **
19457539 CACA-ATGGAAAACATGAAGTGAAAGCTATCCATTGACAAGAAAAGTCCCTTTATAGTTGCTCAT
64 TGCATA-GG-AAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAT
* * * * * * **
19457603 GCATTCGAAAGCCTAGTTACTTGCTTTAAATGGTTTTAT-AGTCTTATAAATTA-TTTAAATCAA
127 GCCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACT-TTATAAATGATTTTAAAT-TG
* * * * * * * *
19457666 AATTTTTTTT-ATTTTTTGTTAAAACACATCATAATTGGATGCTTGCATTGGGAAATGTGTAGAA
190 AATTTTTTTTCATTTCTGGTTAAAACAGATCATAATTGAATGTTTGCATTGGGAAACGTGAAGCA
* * ** *** * * * *
19457730 AAAGCCACCCATTGATAAGAAAAGTTTATTTATAAAAACTTATGCCTTCGAATGTCTTGTCACTC
255 AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAATGCCTTGTTACTC
** * **
19457795 ATTTTAGGTAATTTTATAACT
320 GCTTTAAGTGGTTTTATAACT
* * * *
19457816 TTAGAAAATGATTTTAAATTGAATCTTTTGTCATTTTTGGTTAAAACGGATCATAATTGGATGTT
1 TTA-TAAATGATTTTAAATTGAAT-TTTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGTT
* * * * * * *
19457881 TTCA-ATGAGAAACGTGAAGCAAAAGTCATCCATTGATAAAAAAAATCCATTTATAGTCATTCAT
64 TGCATA-G-GAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAT
* * * * * * *
19457945 GCCTTCAAAAGCCTAGTTACTCACTTTTAGTTGTTTTCTAACTTTATAAATGATTTTAAATTAAA
127 GCCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTATAAATGATTTTAAATTGAA
* * * * * *
19458010 TTTTTTGTTTTACATTTCTAGTTAAAACAGAGCTTAATTGAATGTTTGAATTAGGAAATGTGAAG
192 --TTTT-TTTT-CATTTCTGGTTAAAACAGATCATAATTGAATGTTTGCATTGGGAAACGTGAAG
* *** * *
19458075 CGAGCCCCATCCATTGACAAGAAAAG-CTCATTTATAGTCACTCATGCCTTCGAAGGCCTTGTTA
253 CAAAAGCCATCCATTGACAAGAAAAGTC-CATTTATAGTCACTCATGCCTTCAAATGCCTTGTTA
** * *
19458139 CTCATTTTAAATGGTTTTATGACT
317 CTCGCTTTAAGTGGTTTTATAACT
* * * * * *
19458163 TTATAAATGATTTTGAACTGATTTTTTTTTTATTTCTGGTTAAAACAGATCATAATTGAATGTAT
1 TTATAAATGATTTTAAATTGA-ATTTTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGTTT
* * * * * * *
19458228 GCATTGGGAAACATGAAGCGAAAGCCATCCATTAACAAAAAAAATCCAGTTATTGT-AGCTCATG
65 GCA-TAGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCA-CTCATG
* * * ** * * *
19458292 CCTTTGAATGCCTTGTCACTCATTTTAGGTGGCTTTATAACTTTATAAATCATTTTAAATTGAAT
128 CCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTATAAATGATTTTAAATTGAAT
* * * * * * ** *
19458357 TGTTTTCTCATTTTTTGTTAAAACAGATCATCATT-AGATATTCGCATCAGGAAACGCGAAGCAA
193 T-TTTTTTCATTTCTGGTTAAAACAGATCATAATTGA-ATGTTTGCATTGGGAAACGTGAAGCAA
* * * * * *
19458421 AAGTCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCA-GCCTTCGAATGCCTTGTCAGTCA
256 AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAATGCCTTGTTACTCG
* *
19458485 TTTTAGGTGGTTTTATAACT
321 CTTTAAGTGGTTTTATAACT
* * * *
19458505 TTATAAATTG-TTTTAAATTG-ATTTTTTTCATTTTTGTTTAAAACAGAACATGATTGAATGTTC
1 TTATAAA-TGATTTTAAATTGAATTTTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGTTT
* ** * * * * *
19458568 GCATTGAGAAATGTGAGGCGAAAGCCATCCATTGACAAGAAAATTCTATTTATAGTCATTCATGC
65 GCATAG-GAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGC
* * * * * * *
19458633 CAT-GAAAAGCCTTATTACTCG-TTTAAAATGGTTTTATAA-TCTCATTATTGATTTTAAGTTGA
129 CTTCG-AAAGCCTTGTTACTCGCTTT-AAGTGGTTTTATAACT-TTATAAATGATTTTAAATTGA
* * * * * * * *
19458695 ATTTTTTTACATTTTTGGTTAAAACATATTATAATTGAATGTTTACCTTGGAAAACGTGAAGAAA
191 ATTTTTTTTCATTTCTGGTTAAAACAGATCATAATTGAATGTTTGCATTGGGAAACGTGAAGCAA
* * * * * * * *
19458760 AATCCATACATTGAAAAGAAAAGTCTATTTATAGTCACTCATACCTTCAAAAGCCTTATTACTTG
256 AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAATGCCTTGTTACTCG
* *
19458825 CTTTAAGTGGATTTATAGCCT
321 CTTTAAGTGGTTTTATA-ACT
* * * *
19458846 TT-TAAATGATTTTATATTGAATTTTTTTTGTATTTTTGGTTAAAACATATCGTAATTTG-ATGT
1 TTATAAATGATTTTAAATTGAA-TTTTTTT-CATTTTTGGTTAAAACAGATCATAA-TTGAATGT
* * *** * *
19458909 TTGCATTGGGAAACATAAAGCAAAAGCCATCCATTGACAAGAAAAGTCTGCTTATAGTCCCCCAT
63 TTGCA-TAGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAT
* * * * *
19458974 GCCTTC-ATATGCCTTGTTACTTGATTTAAGTAGATTTATAACTTT-TAGAATGATTTTAAATTG
127 GCCTTCGA-AAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTATA-AATGATTTTAAATTG
* * * ** *
19459037 AATTTTTTTTACATTT-TGGGTTAAAATAGAT-AGTAATTTG-ATGTTTTCGTTGACAAACATGA
190 AATTTTTTTT-CATTTCT-GGTTAAAACAGATCA-TAA-TTGAATGTTTGCATTGGGAAACGTGA
* * ** * *
19459099 AGTAAAAGCCATCCATTAACAAGAAAAGTCCATTTTATAGTCACTCATGCCTTCATGTGCCCTAT
251 AGCAAAAGCCATCCATTGACAAGAAAAGTCCA-TTTATAGTCACTCATGCCTTCAAATGCCTTGT
* * ***
19459164 TACTTGTTTTAAGTGCACTTATAACT
315 TACTCGCTTTAAGTGGTTTTATAACT
* * *
19459190 TTTTAAATGATTTTAAATTGATTTTTTTTTTGCATTTTTGGTTAAAACATATCATAATTTGATAT
1 TTATAAATGATTTTAAATTGA--ATTTTTTT-CATTTTTGGTTAAAACAGATCATAA-TTGA-AT
* * ** * * *
19459255 -TTT-CATTGGGAAACGTGAAGTGAAAGCCATCCATTAACAAGAAAAGTCTAGTTATAGTCACTC
61 GTTTGCA-TAGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTC
* * * * * * *
19459318 ATACCTTTGAAAGCCATGTTATTCTCTTTAAGTGGATTTATAACTTTAGAAATGATTTTAAATT-
125 ATGCCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTATAAATGATTTTAAATTG
* * * * ** *
19459382 AATTTTTTTTTCATTTTTGGTTAAAACCAAATCATAACTTG-TTGTTTGCATCGAAAAACGTTAA
190 AA-TTTTTTTTCATTTCTGGTTAAAA-CAGATCATAA-TTGAATGTTTGCATTGGGAAACGTGAA
* * *
19459446 GAAAAAGCCATCCATTGACAAGAAAAGTCCAATTATAGTAACTCA-----T-AAA-GCCTTGTTA
252 GCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAATGCCTTGTTA
* *
19459504 CTCGCTTTAATTGGATTTATAACT
317 CTCGCTTTAAGTGGTTTTATAACT
* * * * *
19459528 TTTTAAATGATTTTAAATTGAATTTCTTTTACATTTTTGGTTAAAATAGATCGTTATTTG-ATAT
1 TTATAAATGATTTTAAATTGAATTT-TTTT-CATTTTTGGTTAAAACAGATC-ATAATTGAATGT
* * * * *
19459592 TTGCATTGGCAAACATGAAACAAAAGTCATCCATTGACAAGAAAAGTCTATTTATAGTCACTAAT
63 TTGCATAGG-AAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAT
* * * * *
19459657 ACCTTTC-AAAGCCTAT-TCACTCACTTT-AGATGGTTTTATAA-TCTTATAAATCATTTCAAAT
127 GCC-TTCGAAAGCCT-TGTTACTCGCTTTAAG-TGGTTTTATAACT-TTATAAATGATTTTAAAT
* * * *
19459718 TGAA-ATTTTTTCATTTTTGGTTAAAATA-ATCATAATTTG-TTGTTTGCATTGGGAAACGTGAA
188 TGAATTTTTTTTCATTTCTGGTTAAAACAGATCATAA-TTGAATGTTTGCATTGGGAAACGTGAA
* * * * * **
19459780 GCAAAAACCATCCATTGATAAGAAAAGTCTATTTATAGTCACTCATACCCTCGAAA-GCCTAATT
252 GCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTC-AAATGCCTTGTT
* ** *
19459844 AGTCATTTTAAATGGTTTTATAA-T
316 ACTCGCTTTAAGTGGTTTTATAACT
* * * *
19459868 CATATAAATGATTTTAAAATTGAA-TTTTCTCTTTTTTGGTTAAAATAGATCATAATTTG-ATGT
1 -TTATAAATGATTTT-AAATTGAATTTTTTTCATTTTTGGTTAAAACAGATCATAA-TTGAATGT
* * * * * * * *
19459931 TTGCATCTGAAAACATGAAGAAAAAGCAATACATTAACAAGAAAAGTCTATTTATAGTCACTTAT
63 TTGCAT-AGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAT
* * * * *
19459996 GCCTTCGAAAGCCTTATTACTTGCTTTAAGTGGATTTATAACTTTTTAAATGATTTTAAATTGAT
127 GCCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTATAAATGATTTTAAATTGAA
* * * *
19460061 TTTGTTTTTAGATTTTTGGTTAAAACAGAACATAATTTG-ATGTTTGCATTGAGAAACGTGAAGC
192 TTT-TTTTT-CATTTCTGGTTAAAACAGATCATAA-TTGAATGTTTGCATTGGGAAACGTGAAGC
* * *
19460125 AAAAGCCAT-CAGTTGATAAGAAAAGTCCATTTATAGTCACTCATGGCTTCAAAAGCCTAT-TTA
254 AAAAGCCATCCA-TTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAATGCCT-TGTTA
* * * *
19460188 CTCACTTCAAATTGTTTTATAA-T
317 CTCGCTTTAAGTGGTTTTATAACT
* * * * * * *
19460211 CTTATAAATAATTTCAAATT-CA--TTTTT--TTTTTGGTTAAAACATATTATGATTTGTTAT-T
1 -TTATAAATGATTTTAAATTGAATTTTTTTCATTTTTGGTTAAAACAGATCAT-AATTG-AATGT
* * * * *
19460270 TT-CATCAAGAAACATGAAGGAAAAACCATCCATTGATAAGAAAAGTCCATTTATAGTCACTAAT
63 TTGCAT-AGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAT
* * * * * *
19460334 GCCTTCGAAAACCTAGTTAGTTC-CTTTTAAATGGTCTTATAATCTTT-TGAATGATTTTAAGAT
127 GCCTTCGAAAGCCTTGTTA-CTCGC-TTTAAGTGGTTTTATAA-CTTTATAAATGATTTTAA-AT
* * * *** * *
19460397 TGAA-TTATTCTCATTTATGGTTAAAACAGATCATAATTTG-ATGTTTGCATCATGAAACCTTAA
188 TGAATTTTTTTTCATTTCTGGTTAAAACAGATCATAA-TTGAATGTTTGCATTGGGAAACGTGAA
* *
19460460 GCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCCCTCATGCCTTCGAAA-GCCTTATT
252 GCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTC-AAATGCCTTGTT
*
19460524 ACT-GTCTTTAAATGGTTTTATAACT
316 ACTCG-CTTTAAGTGGTTTTATAACT
* * * *
19460549 TTTTAAAAT-ATTTCAAAATGAATTGTTTTTTACATTTTTGGTTAAAACAGATCGTAATTTG-AT
1 TTAT-AAATGATTTTAAATTGAA-T-TTTTTT-CATTTTTGGTTAAAACAGATCATAA-TTGAAT
* * **
19460612 GTTTGCATTAGGAAACATGAAG-AGAAAGCTATCCATTGAGAAGAAAAGTCTGTTTATAGTCACT
61 GTTTGCA-TAGGAAACATGAAGCA-AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACT
* * * **
19460676 CATGCATT--AATATGCCTTGTTACTTGCTTTAAGCGAATTTATAAACTTT-TAAATGATTTTAA
124 CATGCCTTCGAA-A-GCCTTGTTACTCGCTTTAAGTGGTTTTAT-AACTTTATAAATGATTTTAA
* * * * *
19460738 ATTGAATTTTTTTTTACATTTTTAGTTAAAACGGAT-AGTAATTTG-ATGTTTGCATTGAGAAAT
186 ATTGAA-TTTTTTTT-CATTTCTGGTTAAAACAGATCA-TAA-TTGAATGTTTGCATTGGGAAAC
* * * * * *
19460801 GTGAAGCGAAAGCCATCCACTAACAA-AAAAGTCCATTTATAGTCACTCATGCTTTCATACGCCT
247 GTGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAATGCCT
* * **
19460865 TATTACTTGCTTTAAGTGCATTTATAACT
312 TGTTACTCGCTTTAAGTGGTTTTATAACT
* * *
19460894 TTTTAAATGATTTTAAATT-AATTTGTTTTTACATTTTTGGTTAAAGCATATCATAATTTG-ATG
1 TTATAAATGATTTTAAATTGAA-TT-TTTTT-CATTTTTGGTTAAAACAGATCATAA-TTGAATG
* * * * * * * *
19460957 TTTCCATTGGGAAACGTGAAGCACAAGCCATCCACTGACAA-AAAAGTCTAGTTATAGTTACTCA
62 TTTGCA-TAGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCA
* * * * *
19461021 TGCCTTTGAAAGCCTTGTTATTCTCTTTAAGTGGATTTATAACTTTATAAATGATTTTAAATTGC
126 TGCCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTATAAATGATTTTAAATTGA
** * * * * ** *
19461086 A-TTTTTCCCATTTTTGGTTAAGAGCAGGTCATAACTTG-TTGTTTGCATTGAAAAACGTGAAGA
191 ATTTTTTTTCATTTCTGGTTAA-AACAGATCATAA-TTGAATGTTTGCATTGGGAAACGTGAAGC
** * * * *
19461149 AAAAGTGATCCATTGACAAGAAAAGTCCAATTATAGTAACTTATGCCTTCGAAA-GCCTTGTTAT
254 AAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTC-AAATGCCTTGTTAC
* *
19461213 TCTCTTTAAGTGGATTTATAACT
318 TCGCTTTAAGTGGTTTTATAACT
* * * * * *
19461236 TTTTAAATAATTTTAAGTTGAATTTCTTTTACATTTTTGGTTAAAACATATCGTAATTTG-ATAT
1 TTATAAATGATTTTAAATTGAATTT-TTTT-CATTTTTGGTTAAAACAGATCATAA-TTGAATGT
* * * * * *
19461300 TTACATCAGGAAACATGAAACAAAAG-CATCTATTGACAAGCAAAGTCTATTTATAGTCACTTAT
63 TTGCAT-AGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAT
* * * * *
19461364 GCCTTCGAAAGCCTTATTACTCGCTTTAAGTGGATTTATAACTTTTTAAATGATTTTGAATTAAA
127 GCCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTATAAATGATTTTAAATTGAA
* * * * *
19461429 TTATTTTTTACATTTTTGGTTAAAACAGATCGTAATTTG-ATGTTTGCATTAGGAACCATGAAGC
192 TT-TTTTTT-CATTTCTGGTTAAAACAGATCATAA-TTGAATGTTTGCATTGGGAAACGTGAAGC
* * * * * *
19461493 AGAAGCCATCCATTGACAAGAAAAGCCCGTTTATAGTCTCTCATGTCTTCATAA-ACCTTGTTAC
254 AAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCA-AATGCCTTGTTAC
* * *
19461557 TTGCTTTAAGTAGATTTATAACT
318 TCGCTTTAAGTGGTTTTATAACT
* * * * * *
19461580 TTTTAAATGATTTTAAGTTGATTTTTTTTTACA-TTTTGGTTAAAACATATCGTAATTTAATGTT
1 TTATAAATGATTTTAAATTGA-ATTTTTTT-CATTTTTGGTTAAAACAGATCATAATTGAATGTT
* * * * *
19461644 TGCATTGAGAAACATGAAGCAAAAGCCATCTATTGAGAAGAAAAGTCCGTTTATAGTCCCTCATG
64 TGCATAG-GAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG
* * * * * *
19461709 CCTTC-AAACGTCTTATTACTTGCTTTAAGTTGATTTATAACTTTTTAAATGATTTT--A---AA
128 CCTTCGAAA-GCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTATAAATGATTTTAAATTGAA
* * ** * *
19461768 TTTTTTTACATTTTTATTTAAAACAGAT-AGTTATTTG-ATGTTTGCATTGAGAAACGTGAAGCA
192 TTTTTTTTCATTTCTGGTTAAAACAGATCA--TAATTGAATGTTTGCATTGGGAAACGTGAAGCA
* * * * * *
19461831 AAAGCCATCTATGGACAAGAAAAGCCCATTTATAGTCACTCATGCCTTCATACGCCTTGTTACTT
255 AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAATGCCTTGTTACTC
**
19461896 GCTTTAAGTGCATTTATAACT
320 GCTTTAAGTGGTTTTATAACT
* * * **
19461917 TTTTAAATGATTTTAAATTGAATTTGTTTTACATTTTTGGTTAAAACAAATCATTATTTTATGTT
1 TTATAAATGATTTTAAATTGAATTT-TTTT-CATTTTTGGTTAAAACAGATCATAATTGAATGTT
* * * *
19461982 TCCATTGGGAAACATGAAGCAAAAACCATCCATTGACAAG-AAAGTCTAGTTTATAGTCACTCAT
64 TGCA-TAGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCA-TTTATAGTCACTCAT
* * * * * *
19462046 GCCTTTGGAAGCCTTCTTATTCTCTTTAAGTGGATTTATAACTTTATAAATGATTTTAAATT-AA
127 GCCTTCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTATAAATGATTTTAAATTGAA
* * * * ** ** *
19462110 TTTTTTTTCATTTTTGGTTAAAAGCATATCATAACTTG-TTGTTTGCATCGAAAAAAATGAA-AA
192 TTTTTTTTCATTTCTGGTTAAAA-CAGATCATAA-TTGAATGTTTGCATTGGGAAACGTGAAGCA
** * * * * * *
19462173 AAAGCCATCCATTGACAAGAATTGTCCAATTATAGTAACTCATGTCTTTAAAAGCCTTGTTACTT
255 AAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAATGCCTTGTTACTC
* *
19462238 GTTTTAAGTGGATTTATAACT
320 GCTTTAAGTGGTTTTATAACT
* *
19462259 TTTTAAATGATTTTAAATTGAATTTCTTTTACATTTTTGGTT--AATAGATCATAATTTG-ATGT
1 TTATAAATGATTTTAAATTGAATTT-TTTT-CATTTTTGGTTAAAACAGATCATAA-TTGAATGT
* * * * * * * * *
19462321 TTGCATCGAGAAACTTGAAACAAAAGCCATCTATTTATAAGAAAAGTCTATTTATAGTTACTAAT
63 TTGCATAG-GAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCAT
* * * * *
19462386 GCTTTCAAAAGCCTAT-TTACTCGC-TTCAGATGGTTTTATAATTTTATAAATGATTTTAATTTG
127 GCCTTCGAAAGCCT-TGTTACTCGCTTTAAG-TGGTTTTATAACTTTATAAATGATTTTAAATTG
* * * * * *
19462449 AATTTTTTTTTCATTTTTGGTTAAAACAGATCATAGTTTG-TTGTTTGCATTGAGAAGCATGCAA
190 AA-TTTTTTTTCATTTCTGGTTAAAACAGATCATA-ATTGAATGTTTGCATTGGGAAACGTG-AA
*
19462513 TG-AAAA-CCATCCATTGACAAAAAAAGTCCAT
252 -GCAAAAGCCATCCATTGACAAGAAAAGTCCAT
19462544 CTAGCTTTGC
Statistics
Matches: 10926, Mismatches: 2252, Indels: 830
0.78 0.16 0.06
Matches are distributed among these distances:
320 100 0.01
321 9 0.00
323 1 0.00
326 3 0.00
328 4 0.00
329 73 0.01
330 36 0.00
331 51 0.00
332 9 0.00
333 70 0.01
334 94 0.01
335 3 0.00
336 61 0.01
337 456 0.04
338 313 0.03
339 344 0.03
340 1786 0.16
341 1424 0.13
342 1947 0.18
343 2208 0.20
344 636 0.06
345 536 0.05
346 486 0.04
347 272 0.02
348 4 0.00
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.38
Consensus pattern (340 bp):
TTATAAATGATTTTAAATTGAATTTTTTTCATTTTTGGTTAAAACAGATCATAATTGAATGTTTG
CATAGGAAACATGAAGCAAAAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCT
TCGAAAGCCTTGTTACTCGCTTTAAGTGGTTTTATAACTTTATAAATGATTTTAAATTGAATTTT
TTTTCATTTCTGGTTAAAACAGATCATAATTGAATGTTTGCATTGGGAAACGTGAAGCAAAAGCC
ATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCAAATGCCTTGTTACTCGCTTTA
AGTGGTTTTATAACT
Found at i:19463008 original size:172 final size:169
Alignment explanation
Indices: 19462586--19464819 Score: 2043
Period size: 172 Copynumber: 13.1 Consensus size: 169
19462576 AAAGCCCATC
* * * * * **
19462586 TAAAATTATTTATAAAGTTCTAAAACCACTTAAAGTAAGTAACAAGGCACTCGAAGGCATGAGTG
1 TAAAATCATTTAAAAAGTTATAAATCCACTTAAAGCAAGTAACAAGGCTTTCGAAGGCATGAGTG
* * * * * * * * *
19462651 ACAATAAATAGACTTTTCTTGTCAACGAAAGGTTTTTGCTTCACGTTTCCCAATGCAAATAACAT
66 ACTATAAATAGACTTTTCTTGTCAATGGATGGTTTTCGCTTCACGTTT-CCTATGCAAACATCAA
* *
19462716 ATTATGATCTATTTTAACCAACAAT-AAAAAAATTCAATT
130 ATTATGATCTGTTTTAACCAAAAATAAAAAAAATTCAATT
* * * * * *
19462755 TGAAATCATTT-ATAAGATTATAAATCCATTTGAAGCAAATAA-ATAGGCTTTCCAA-GCTATGA
1 TAAAATCATTTAAAAAG-TTATAAATCCACTTAAAGCAAGTAACA-AGGCTTTCGAAGGC-ATGA
* * * * *
19462817 GTGAATATAAATAGACTTTTTTTATTAATGGATGGTTTTCGCTTCACGTTTCCTACTGAAAACAT
63 GTGACTATAAATAGACTTTTCTTGTCAATGGATGGTTTTCGCTTCACGTTTCCTA-TGCAAACAT
* *
19462882 CAAATTATGATCTGATTTAACCAAAATTATAAAAAAAATTTAATT
127 CAAATTATGATCTGTTTTAACCAAAA--ATAAAAAAAATTCAATT
*
19462927 TAAAATCATTTAAAAAGTTATAAATCCACTTAAAGCAAGTAATAAGG-TGTAT-GAAGGCATGAG
1 TAAAATCATTTAAAAAGTTATAAATCCACTTAAAGCAAGTAACAAGGCT-T-TCGAAGGCATGAG
* * * * *
19462990 TGACTATAAATGGACTTTTCTTGTCAATGAATGGCTTTT-GCTTCATGTTTTCTTATGTAAACAT
64 TGACTATAAATAGACTTTTCTTGTCAATGGATGG-TTTTCGCTTCACG-TTTCCTATGCAAACAT
*
19463054 CAAATTATGATCTGTTTTAACCAAAAATGCAAAAACAAATTCAATC
127 CAAATTATGATCTGTTTTAACCAAAAAT--AAAAA-AAATTCAATT
* *
19463100 TAAAATCATTTAAAAAGTTATAAATCCACTTAAAGCAAGTAATAAGGCTTTCGCAGGCATGAGTG
1 TAAAATCATTTAAAAAGTTATAAATCCACTTAAAGCAAGTAACAAGGCTTTCGAAGGCATGAGTG
* * * * *
19463165 ACTATAAATAGACTTTTCTTGTCAATGTATAGCTTTT-TCTTCACGTTTCTTGATACAAACATCA
66 ACTATAAATAGACTTTTCTTGTCAATGGAT-GGTTTTCGCTTCACGTTTCCT-ATGCAAACATCA
* * * *
19463229 AATTATGATATTTTTTAGCCAAAAAAGTAAAAGAAATTCAATT
129 AATTATGATCTGTTTTAACC-AAAAA-TAAAAAAAATTCAATT
* * * * * * *
19463272 CAAAAACATGTAAAAAGTTATAAATCCACTTAAAGCGATTAACAAGGCTTTCGAAGGCATAAGTT
1 TAAAATCATTTAAAAAGTTATAAATCCACTTAAAGCAAGTAACAAGGCTTTCGAAGGCATGAGTG
* * * * * *
19463337 ACTATAACTAGACTTTTCTTGTCAATGGATGGGTTTT-TCTTTACGTTTTTCGATGCAAA-AACA
66 ACTATAAATAGACTTTTCTTGTCAATGGAT-GGTTTTCGCTTCACG-TTTCCTATGCAAACATCA
* * * *
19463400 AGTTATGATCTGCTTTAACTAAAGATTAAAAAAAA-TCAATT
129 AATTATGATCTGTTTTAACCAAA-AATAAAAAAAATTCAATT
* *
19463441 TAAAATCATTTATAAAGTTATAAATCCACTTAAAG-AGAATAACAAGGCTTTCGAAGGCATGAGT
1 TAAAATCATTTAAAAAGTTATAAATCCACTTAAAGCA-AGTAACAAGGCTTTCGAAGGCATGAGT
* * ** * * * *
19463505 GACTATAACTGGACTTTTCTTGTCAACAGAAGGTTTTCACTTTACGTCTCCTAATGCAAACATCA
65 GACTATAAATAGACTTTTCTTGTCAATGGATGGTTTTCGCTTCACGTTTCCT-ATGCAAACATCA
*
19463570 AATTATGATCT-TTTTAGACCAAAAATGTAAAACAAATTCAATT
129 AATTATGATCTGTTTTA-ACCAAAAA--TAAAAAAAATTCAATT
* * * * * *
19463613 CAAAATCATTTAGAAAGTTCTAAAACCACTTAAAGCAAGTAACAAGGCTTTTGAAGGGATGAGTG
1 TAAAATCATTTAAAAAGTTATAAATCCACTTAAAGCAAGTAACAAGGCTTTCGAAGGCATGAGTG
* * * * * *
19463678 GCTATAAATAGACTTTTCTTATCAATGGATGGGTTTCGCTTCACATCTCCCAATGCAAACATCAA
66 ACTATAAATAGACTTTTCTTGTCAATGGATGGTTTTCGCTTCACGT-TTCCTATGCAAACATCAA
* * ** *
19463743 ATTATGATATGTTTTAACCAAAAATGATAGGAAATTCAATC
130 ATTATGATCTGTTTTAACCAAAAAT-AAAAAAAATTCAATT
* * * * ** * * *
19463784 TAAAATTATTTATAAAGTTCTAAAACCACTTAAAGTGAGTAATAAGGCTTTTGAAGGCATGAGTT
1 TAAAATCATTTAAAAAGTTATAAATCCACTTAAAGCAAGTAACAAGGCTTTCGAAGGCATGAGTG
* * * * * * ** *
19463849 ACCATAATTGGACTTTTCTTGTCAATGGATAGATTTT-TCTTCATGTTTTTTGATGCAAA-AACA
66 ACTATAAATAGACTTTTCTTGTCAATGGAT-GGTTTTCGCTTCACGTTTCCT-ATGCAAACATCA
* * *
19463912 AGTTATGATTTGCTTTAACCAAAAATGAAAAAAAA-TCAATT
129 AATTATGATCTGTTTTAACCAAAAAT-AAAAAAAATTCAATT
* * * * *
19463953 TAAAATCATTTATAAAGTTATAAATCCACTTAAAG-AGAATAACAAGACTTTCAAAGGAATGAGT
1 TAAAATCATTTAAAAAGTTATAAATCCACTTAAAGCA-AGTAACAAGGCTTTCGAAGGCATGAGT
* * * *** * * *
19464017 GACTATAACTGGACTTTTCTTATCAACAAAAGGTTTTCGCTTCACGTTTCCTAATTCAAACATCG
65 GACTATAAATAGACTTTTCTTGTCAATGGATGGTTTTCGCTTCACGTTTCCT-ATGCAAACATCA
* * ** *
19464082 AATTATAATCTTTTTTAATTGAAAATGTAAAAAAAAATTCAATT
129 AATTATGATCTGTTTTAA-CCAAAA-AT-AAAAAAAATTCAATT
* * * * *
19464126 CAAAATCATTTAAAAAGTTCTAAAAT-CACTTAAAGCGAGTAAGAAGGCTTT-GAAGGGATGAGT
1 TAAAATCATTTAAAAAGTTAT-AAATCCACTTAAAGCAAGTAACAAGGCTTTCGAAGGCATGAGT
** * * * * * * *
19464189 TCCTATAAATAGACTTTTCTTGTCATTGGATGGCTTTCACTTCACATCTCGTAATGCAAACACCA
65 GACTATAAATAGACTTTTCTTGTCAATGGATGGTTTTCGCTTCACGTTTCCT-ATGCAAACATCA
* * * * **
19464254 AACTATGATCTGTTGTAACCAAAAATGATAAGAAATTCAAAC
129 AATTATGATCTGTTTTAACCAAAAAT-AAAAAAAATTCAATT
** * * * *
19464296 TAAAATCATTTATGAAGTTCTAAAACCACTTAAAGCAAGTAACAAGGTTTTTGAAGGCATGAGTG
1 TAAAATCATTTAAAAAGTTATAAATCCACTTAAAGCAAGTAACAAGGCTTTCGAAGGCATGAGTG
* * * * * * * *
19464361 ACAATAAATGGACTTTTCTTATCAACGGAAGGTTTTTGCTTCATGTTTCTCAATGCAAACAAT-A
66 ACTATAAATAGACTTTTCTTGTCAATGGATGGTTTTCGCTTCACGTTTC-CTATGCAAAC-ATCA
* *
19464425 AATTATGATCTATTTTAACCAAAAATGAAAAAAATTCAATT
129 AATTATGATCTGTTTTAACCAAAAATAAAAAAAATTCAATT
* * * * * * * * *
19464466 TGAAATCATTT-ATAAGATTATAAAACCATTTGAAGCGAGTAA-ATAGGCTTTCCAAGCCATGAA
1 TAAAATCATTTAAAAAG-TTATAAATCCACTTAAAGCAAGTAACA-AGGCTTTCGAAGGCATGAG
* * * * * * *
19464529 TGACTATAAATGGACTTTTCTTATTAATAGATGGCTTTCGCTTCATGTTTCCTGATGGAAACATC
64 TGACTATAAATAGACTTTTCTTGTCAATGGATGGTTTTCGCTTCACGTTTCCT-ATGCAAACATC
*
19464594 AAATTATGATCTATTTTAACCAAAAATATAAAAAAATTCAATT
128 AAATTATGATCTGTTTTAACCAAAAATA-AAAAAAATTCAATT
* ** * *
19464637 TAAAATCATTTAAAAAGTTACAAATCCACTTAAAG-AGAGTAATGAGGTTTTTGAAGGCATGAGT
1 TAAAATCATTTAAAAAGTTATAAATCCACTTAAAGCA-AGTAACAAGGCTTTCGAAGGCATGAGT
* * * * *
19464701 GACTATAAATAGACTTTTCTTATCAATGTATGGCTTTT-TCTTCAAGTTTCTCGATGCAAACATC
65 GACTATAAATAGACTTTTCTTGTCAATGGATGG-TTTTCGCTTCACGTTTC-CTATGCAAACATC
* * *
19464765 AAATTATGATTTGTTTTAACTAAAAA-AGAGAAAAATTCAATTT
128 AAATTATGATCTGTTTTAACCAAAAATA-AAAAAAATTCAA-TT
19464808 TAAAATCATTTA
1 TAAAATCATTTA
19464820 TACTGTCACG
Statistics
Matches: 1679, Mismatches: 324, Indels: 122
0.79 0.15 0.06
Matches are distributed among these distances:
168 23 0.01
169 324 0.19
170 277 0.16
171 366 0.22
172 467 0.28
173 210 0.13
174 11 0.01
175 1 0.00
ACGTcount: A:0.39, C:0.14, G:0.13, T:0.34
Consensus pattern (169 bp):
TAAAATCATTTAAAAAGTTATAAATCCACTTAAAGCAAGTAACAAGGCTTTCGAAGGCATGAGTG
ACTATAAATAGACTTTTCTTGTCAATGGATGGTTTTCGCTTCACGTTTCCTATGCAAACATCAAA
TTATGATCTGTTTTAACCAAAAATAAAAAAAATTCAATT
Found at i:19463567 original size:341 final size:340
Alignment explanation
Indices: 19462587--19464821 Score: 2080
Period size: 341 Copynumber: 6.5 Consensus size: 340
19462577 AAGCCCATCT
* * * * * **
19462587 AAAATTATTTATAAAGTTCTAAAACCACTTAAAGTAAGTAACAAGGCACTCGAAGGCATGAGTGA
1 AAAATCATTTAAAAAGTTATAAATCCACTTAAAGCAAGTAACAAGGCTTTCGAAGGCATGAGTGA
* * * ** * * * *
19462652 CAATAAATAGACTTTTCTTGTCAA-CGAAAGGTTTTTGCTTCACGTTTCCCAATGCAAATAACAT
66 CTATAAATAGACTTTTCTTATCAATGGATGGGTTTTT-CTTCACGTTTCTCAATGCAAACATCAA
* * *
19462716 ATTATGATCTATTTTAACCAACAAT-AAAAAAATTCAATTTGAAATCATTTAT-AAGATTATAAA
130 ATTATGATCTGTTTTAACCAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAAG-TTATAAA
* * * * * * *
19462779 TCCATTTGAAGCA-AATAAATAGGCTTTCCAA-GCTATGAGTGAATATAAATAGACTTTTTTTAT
194 TCCACTTAAAG-AGAGTAAA-AGGCTTTCGAAGGC-ATGAGTGACTATAAATAGACTTTTCTTGT
* * * * * **
19462842 TAATGGATGGTTTTCGCTTCACGTTTCCTACTGAAAACATCAAATTATGATCTGATTTAACCAAA
256 CAATGGAAGGTTTTCACTTCACGTTTCCTAATGCAAACATCAAATTATGATCTTTTTTAACCAAA
* * *
19462907 ATTA-TAAAAAAAATTTAATTT
321 A-AAGT-AAAAAAATTCAATTC
*
19462928 AAAATCATTTAAAAAGTTATAAATCCACTTAAAGCAAGTAATAAGG-TGTAT-GAAGGCATGAGT
1 AAAATCATTTAAAAAGTTATAAATCCACTTAAAGCAAGTAACAAGGCT-T-TCGAAGGCATGAGT
* * * * * * * *
19462991 GACTATAAATGGACTTTTCTTGTCAATGAATGGCTTTTGCTTCATGTTT-TCTTATGTAAACATC
64 GACTATAAATAGACTTTTCTTATCAATGGATGGGTTTTTCTTCACGTTTCTC-AATGCAAACATC
* *
19463055 AAATTATGATCTGTTTTAACCAAAAATGCAAAAACAAATTCAATCTAAAATCATTTAAAAAGTTA
128 AAATTATGATCTGTTTTAACCAAAAATG--AAAA-AAATTCAATTTAAAATCATTTATAAAGTTA
*
19463120 TAAATCCACTTAAAGCA-AGTAATAAGGCTTTCGCAGGCATGAGTGACTATAAATAGACTTTTCT
190 TAAATCCACTTAAAG-AGAGTAA-AAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCT
* * * * * * * *
19463184 TGTCAATGTATAGCTTTT-TCTTCACGTTTCTTGATACAAACATCAAATTATGATATTTTTTAGC
253 TGTCAATGGA-AGGTTTTCACTTCACGTTTCCTAATGCAAACATCAAATTATGATCTTTTTTAAC
19463248 CAAAAAAGTAAAAGAAATTCAATTC
317 CAAAAAAGTAAAA-AAATTCAATTC
* * * * * *
19463273 AAAAACATGTAAAAAGTTATAAATCCACTTAAAGCGATTAACAAGGCTTTCGAAGGCATAAGTTA
1 AAAATCATTTAAAAAGTTATAAATCCACTTAAAGCAAGTAACAAGGCTTTCGAAGGCATGAGTGA
* * * * * * *
19463338 CTATAACTAGACTTTTCTTGTCAATGGATGGGTTTTTCTTTACGTTTTTCGATGCAAA-AACAAG
66 CTATAAATAGACTTTTCTTATCAATGGATGGGTTTTTCTTCACGTTTCTCAATGCAAACATCAAA
* * * * *
19463402 TTATGATCTGCTTTAACTAAAGATTAAAAAAAATCAATTTAAAATCATTTATAAAGTTATAAATC
131 TTATGATCTGTTTTAACCAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAATC
* * * *
19463467 CACTTAAAGAGAATAACAAGGCTTTCGAAGGCATGAGTGACTATAACTGGACTTTTCTTGTCAAC
196 CACTTAAAGAGAGTAA-AAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAAT
* * * *
19463532 AGAAGGTTTTCACTTTACGTCTCCTAATGCAAACATCAAATTATGATC-TTTTTAGACCAAAAAT
260 GGAAGGTTTTCACTTCACGTTTCCTAATGCAAACATCAAATTATGATCTTTTTTA-ACCAAAAAA
19463596 GTAAAACAAATTCAATTC
324 GTAAAA-AAATTCAATTC
* * * * * *
19463614 AAAATCATTTAGAAAGTTCTAAAACCACTTAAAGCAAGTAACAAGGCTTTTGAAGGGATGAGTGG
1 AAAATCATTTAAAAAGTTATAAATCCACTTAAAGCAAGTAACAAGGCTTTCGAAGGCATGAGTGA
** * * *
19463679 CTATAAATAGACTTTTCTTATCAATGGATGGGTTTCGCTTCACATCTCCCAATGCAAACATCAAA
66 CTATAAATAGACTTTTCTTATCAATGGATGGGTTTTTCTTCACGTTTCTCAATGCAAACATCAAA
* ** * * * *
19463744 TTATGATATGTTTTAACCAAAAATGATAGGAAATTCAATCTAAAATTATTTATAAAGTTCTAAAA
131 TTATGATCTGTTTTAACCAAAAATGA-AAAAAATTCAATTTAAAATCATTTATAAAGTTATAAAT
* * * * * *
19463809 CCACTTAAAGTGAGTAATAAGGCTTTTGAAGGCATGAGTTACCATAATTGGACTTTTCTTGTCAA
195 CCACTTAAAGAGAGTAA-AAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAA
* * * ** * * * *
19463874 TGGATAGATTTT-TCTTCATGTTTTTTGATGCAAA-AACAAGTTATGAT-TTGCTTTAACCAAAA
259 TGGA-AGGTTTTCACTTCACGTTTCCTAATGCAAACATCAAATTATGATCTT-TTTTAACCAAAA
* * *
19463936 ATG-AAAAAAAATCAATTT
322 AAGTAAAAAAATTCAATTC
* * * * *
19463954 AAAATCATTTATAAAGTTATAAATCCACTTAAAG-AGAATAACAAGACTTTCAAAGGAATGAGTG
1 AAAATCATTTAAAAAGTTATAAATCCACTTAAAGCA-AGTAACAAGGCTTTCGAAGGCATGAGTG
* * ** ** * *
19464018 ACTATAACTGGACTTTTCTTATCAA-CAAAAGGTTTTCGCTTCACGTTTC-CTAATTCAAACATC
65 ACTATAAATAGACTTTTCTTATCAATGGATGGGTTTT-TCTTCACGTTTCTC-AATGCAAACATC
* * * *** * * *
19464081 GAATTATAATCTTTTTTAATTGAAAATGTAAAAAAAAATTCAATTCAAAATCATTTAAAAAGTTC
128 AAATTATGATCTGTTTTAACCAAAAATG---AAAAAAATTCAATTTAAAATCATTTATAAAGTTA
* * **
19464146 TAAAAT-CACTTAAAGCGAGTAAGAAGGCTTT-GAAGGGATGAGTTCCTATAAATAGACTTTTCT
190 T-AAATCCACTTAAAGAGAGTAA-AAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCT
* * * * * * * * * *
19464209 TGTCATTGGATGGCTTTCACTTCACATCTCGTAATGCAAACACCAAACTATGATCTGTTGTAACC
253 TGTCAATGGAAGGTTTTCACTTCACGTTTCCTAATGCAAACATCAAATTATGATCTTTTTTAACC
* * *
19464274 AAAAATG-ATAAGAAATTCAA-AC
318 AAAAAAGTA-AAAAAATTCAATTC
** * * * *
19464296 TAAAATCATTTATGAAGTTCTAAAACCACTTAAAGCAAGTAACAAGGTTTTTGAAGGCATGAGTG
1 -AAAATCATTTAAAAAGTTATAAATCCACTTAAAGCAAGTAACAAGGCTTTCGAAGGCATGAGTG
* * * * *
19464361 ACAATAAATGGACTTTTCTTATCAACGGA-AGGTTTTTGCTTCATGTTTCTCAATGCAAACAAT-
65 ACTATAAATAGACTTTTCTTATCAATGGATGGGTTTTT-CTTCACGTTTCTCAATGCAAAC-ATC
* *
19464424 AAATTATGATCTATTTTAACCAAAAATGAAAAAAATTCAATTTGAAATCATTTAT-AAGATTATA
128 AAATTATGATCTGTTTTAACCAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAAG-TTATA
* * * * * * * * *
19464488 AAACCATTTGAAGCGAGTAAATAGGCTTTCCAAGCCATGAATGACTATAAATGGACTTTTCTTAT
192 AATCCACTTAAAGAGAGTAAA-AGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGT
* * * * * * * * *
19464553 TAATAGATGGCTTTCGCTTCATGTTTCCTGATGGAAACATCAAATTATGATCTATTTTAACCAAA
256 CAATGGAAGGTTTTCACTTCACGTTTCCTAATGCAAACATCAAATTATGATCTTTTTTAACCAAA
*
19464618 AATA-TAAAAAAATTCAATTT
321 AA-AGTAAAAAAATTCAATTC
* ** * *
19464638 AAAATCATTTAAAAAGTTACAAATCCACTTAAAG-AGAGTAATGAGGTTTTTGAAGGCATGAGTG
1 AAAATCATTTAAAAAGTTATAAATCCACTTAAAGCA-AGTAACAAGGCTTTCGAAGGCATGAGTG
* * * *
19464702 ACTATAAATAGACTTTTCTTATCAATGTATGGCTTTTTCTTCAAGTTTCTCGATGCAAACATCAA
65 ACTATAAATAGACTTTTCTTATCAATGGATGGGTTTTTCTTCACGTTTCTCAATGCAAACATCAA
* * * *
19464767 ATTATGATTTGTTTTAACTAAAAAAGAGAAAAATTCAATTTTAAAATCATTTATA
130 ATTATGATCTGTTTTAACCAAAAATGAAAAAAATTCAA-TTTAAAATCATTTATA
19464822 CTGTCACGAC
Statistics
Matches: 1548, Mismatches: 292, Indels: 106
0.80 0.15 0.05
Matches are distributed among these distances:
339 15 0.01
340 196 0.13
341 643 0.42
342 154 0.10
343 247 0.16
344 46 0.03
345 233 0.15
346 14 0.01
ACGTcount: A:0.39, C:0.14, G:0.13, T:0.34
Consensus pattern (340 bp):
AAAATCATTTAAAAAGTTATAAATCCACTTAAAGCAAGTAACAAGGCTTTCGAAGGCATGAGTGA
CTATAAATAGACTTTTCTTATCAATGGATGGGTTTTTCTTCACGTTTCTCAATGCAAACATCAAA
TTATGATCTGTTTTAACCAAAAATGAAAAAAATTCAATTTAAAATCATTTATAAAGTTATAAATC
CACTTAAAGAGAGTAAAAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATG
GAAGGTTTTCACTTCACGTTTCCTAATGCAAACATCAAATTATGATCTTTTTTAACCAAAAAAGT
AAAAAAATTCAATTC
Found at i:19463954 original size:512 final size:512
Alignment explanation
Indices: 19462587--19464821 Score: 2380
Period size: 512 Copynumber: 4.4 Consensus size: 512
19462577 AAGCCCATCT
* * * ** *
19462587 AAAATTATTTATAAAGTTCTAAAACCACTTAAAGTAAGTAACAAGGCACTCGAAGGCATGAGTGA
1 AAAATCATTTAAAAAGTTCTAAAACCACTTAAAGCAAGTAACAAGGCTTTTGAAGGCATGAGTGA
* * * * * * * * *
19462652 CAATAAATAGACTTTTCTTGTCAACGAAAGGTTTTTGCTTCACGTTTCCCAATGCAAATAACATA
66 CTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACATTTCCCAATGCAAACATCAAA
* * * * * *
19462717 TTATGATCTATTTTAACCAACAAT-A-AAAAAATTCAATTTGAAATCATTTAT-AAGATTATAAA
131 TTATGATATGTTTTAACCAAAAATGATAAGAAATTCAATCTAAAATCATTTATAAAG-TTATAAA
* * * * * * *
19462779 TCCATTTGAAGCAAATAA-ATAGGCTTTCCAA-GCTATGAGTGAATATAAATAGACTTTTTTTAT
195 ACCACTTAAAGCAAGTAACA-AGGCTTTCGAAGGC-ATGAGTGACTATAAATAGACTTTTCTTAT
* * * *
19462842 TAATGGAT-GGTTTTCGCTTCACGTTTC-CTACTG-AAAACATCAAATTATGATCTGATTTAACC
258 CAATGGATAGGTTTT-TCTTCACGTTTCTCGA-TGCAAAA-A-CAAATTATGATCTGCTTTAACC
* * *
19462904 AAAATTAT-AAAAAAAATTTAATTTAAAATCATTTAAAAAGTTATAAATCCACTTAAAGCA-AGT
319 AAAA--ATGAAAAAAAA-TCAATTTAAAATCATTTATAAAGTTATAAATCCACTTAAAG-AGAAT
* * *
19462967 AATAAGG-TGTAT-GAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAA-TGAATGGCTTTT
380 AACAAGGCT-T-TCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAACAGAA-GG-TTTT
* * * * * *
19463029 -GCTTCATGTTTTCTTATGTAAACATCAAATTATGATCTGTTTTAACCAAAAATGCAAAAACAAA
441 CGCTTCACGTTTCCTAATGCAAACATCAAATTATGATCTATTTTAACCAAAAATG-TAAAACAAA
19463093 TTCAA-TC
505 TTCAATTC
* * * * *
19463100 TAAAATCATTTAAAAAGTTATAAATCCACTTAAAGCAAGTAATAAGGCTTTCGCAGGCATGAGTG
1 -AAAATCATTTAAAAAGTTCTAAAACCACTTAAAGCAAGTAACAAGGCTTTTGAAGGCATGAGTG
* * * * *** *
19463165 ACTATAAATAGACTTTTCTTGTCAATGTATAGCTTTTTCTTCACGTTTCTTGATACAAACATCAA
65 ACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACATTTCCCAATGCAAACATCAA
* * * * * * *
19463230 ATTATGATATTTTTTAGCCAAAAAAGTAAAAGAAATTCAAT-TCAAAAACATGTAAAAAGTTATA
130 ATTATGATATGTTTTAACCAAAAATG-ATAAGAAATTCAATCT-AAAATCATTTATAAAGTTATA
* * * * * * *
19463294 AATCCACTTAAAGCGATTAACAAGGCTTTCGAAGGCATAAGTTACTATAACTAGACTTTTCTTGT
193 AAACCACTTAAAGCAAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTAT
* * * * * *
19463359 CAATGGATGGGTTTTTCTTTACGTTTTTCGATGCAAAAACAAGTTATGATCTGCTTTAACTAAAG
258 CAATGGATAGGTTTTTCTTCACGTTTCTCGATGCAAAAACAAATTATGATCTGCTTTAACCAAAA
*
19463424 ATTAAAAAAAATCAATTTAAAATCATTTATAAAGTTATAAATCCACTTAAAGAGAATAACAAGGC
323 ATGAAAAAAAATCAATTTAAAATCATTTATAAAGTTATAAATCCACTTAAAGAGAATAACAAGGC
* * * * *
19463489 TTTCGAAGGCATGAGTGACTATAACTGGACTTTTCTTGTCAACAGAAGGTTTTCACTTTACGTCT
388 TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAACAGAAGGTTTTCGCTTCACGTTT
19463554 CCTAATGCAAACATCAAATTATGATCT-TTTTAGACCAAAAATGTAAAACAAATTCAATTC
453 CCTAATGCAAACATCAAATTATGATCTATTTTA-ACCAAAAATGTAAAACAAATTCAATTC
* * *
19463614 AAAATCATTTAGAAAGTTCTAAAACCACTTAAAGCAAGTAACAAGGCTTTTGAAGGGATGAGTGG
1 AAAATCATTTAAAAAGTTCTAAAACCACTTAAAGCAAGTAACAAGGCTTTTGAAGGCATGAGTGA
* * * *
19463679 CTATAAATAGACTTTTCTTATCAATGGATGGGTTTCGCTTCACATCTCCCAATGCAAACATCAAA
66 CTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACATTTCCCAATGCAAACATCAAA
* * *
19463744 TTATGATATGTTTTAACCAAAAATGATAGGAAATTCAATCTAAAATTATTTATAAAGTTCTAAAA
131 TTATGATATGTTTTAACCAAAAATGATAAGAAATTCAATCTAAAATCATTTATAAAGTTATAAAA
** * * * * * * *
19463809 CCACTTAAAGTGAGTAATAAGGCTTTTGAAGGCATGAGTTACCATAATTGGACTTTTCTTGTCAA
196 CCACTTAAAGCAAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTATCAA
* * * * * *
19463874 TGGATAGATTTTTCTTCATGTTTTTTGATGCAAAAACAAGTTATGATTTGCTTTAACCAAAAATG
261 TGGATAGGTTTTTCTTCACGTTTCTCGATGCAAAAACAAATTATGATCTGCTTTAACCAAAAATG
*
19463939 AAAAAAAATCAATTTAAAATCATTTATAAAGTTATAAATCCACTTAAAGAGAATAACAAGACTTT
326 AAAAAAAATCAATTTAAAATCATTTATAAAGTTATAAATCCACTTAAAGAGAATAACAAGGCTTT
* * * *
19464004 CAAAGGAATGAGTGACTATAACTGGACTTTTCTTATCAACAAAAGGTTTTCGCTTCACGTTTCCT
391 CGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAACAGAAGGTTTTCGCTTCACGTTTCCT
* * * * *** *
19464069 AATTCAAACATCGAATTATAATCTTTTTTAATTGAAAATGTAAAAAAAAATTCAATTC
456 AATGCAAACATCAAATTATGATCTATTTTAACCAAAAATGT-AAAACAAATTCAATTC
* * * * **
19464127 AAAATCATTTAAAAAGTTCTAAAATCACTTAAAGCGAGTAAGAAGGC-TTTGAAGGGATGAGTTC
1 AAAATCATTTAAAAAGTTCTAAAACCACTTAAAGCAAGTAACAAGGCTTTTGAAGGCATGAGTGA
* ** * ** *
19464191 CTATAAATAGACTTTTCTTGTCATTGGATGGCTTTCACTTCACATCTCGTAATGCAAACACCAAA
66 CTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACATTTCCCAATGCAAACATCAAA
* * * * * *
19464256 CTATGATCTGTTGTAACCAAAAATGATAAGAAATTCAAACTAAAATCATTTATGAAGTTCTAAAA
131 TTATGATATGTTTTAACCAAAAATGATAAGAAATTCAATCTAAAATCATTTATAAAGTTATAAAA
* * * *
19464321 CCACTTAAAGCAAGTAACAAGGTTTTTGAAGGCATGAGTGACAATAAATGGACTTTTCTTATCAA
196 CCACTTAAAGCAAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTATCAA
* * * * **
19464386 CGGA-AGGTTTTTGCTTCATGTTTCTCAATGCAAACAATAAATTATGATCTATTTTAACCAAAAA
261 TGGATAGGTTTTT-CTTCACGTTTCTCGATGCAAA-AACAAATTATGATCTGCTTTAACCAAAAA
* * * * * * *
19464450 TGAAAAAAATTCAATTTGAAATCATTTAT-AAGATTATAAAACCATTTGAAGCGAGTAA-ATAGG
324 TGAAAAAAAATCAATTTAAAATCATTTATAAAG-TTATAAATCCACTTAAAGAGAATAACA-AGG
* * * * * * * *
19464513 CTTTCCAAGCCATGAATGACTATAAATGGACTTTTCTTATTAATAGATGGCTTTCGCTTCATGTT
387 CTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAACAGAAGGTTTTCGCTTCACGTT
* * * *
19464578 TCCTGATGGAAACATCAAATTATGATCTATTTTAACCAAAAATATAAAA-AAATTCAATTT
452 TCCTAATGCAAACATCAAATTATGATCTATTTTAACCAAAAATGTAAAACAAATTCAATTC
* ** *
19464638 AAAATCATTTAAAAAGTTAC-AAATCCACTTAAAG-AGAGTAATGAGGTTTTTGAAGGCATGAGT
1 AAAATCATTTAAAAAGTT-CTAAAACCACTTAAAGCA-AGTAACAAGGCTTTTGAAGGCATGAGT
* * * * *
19464701 GACTATAAATAGACTTTTCTTATCAATGTATGGCTTTTTCTTCA-AGTTTCTCGATGCAAACATC
64 GACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACA-TTTCCCAATGCAAACATC
* * * * *
19464765 AAATTATGATTTGTTTTAACTAAAAAAGAGAA-AAATTCAATTTTAAAATCATTTATA
128 AAATTATGATATGTTTTAACCAAAAATGATAAGAAATTCAA-TCTAAAATCATTTATA
19464822 CTGTCACGAC
Statistics
Matches: 1465, Mismatches: 226, Indels: 62
0.84 0.13 0.04
Matches are distributed among these distances:
511 64 0.04
512 615 0.42
513 382 0.26
514 258 0.18
515 12 0.01
516 24 0.02
517 92 0.06
518 18 0.01
ACGTcount: A:0.39, C:0.14, G:0.13, T:0.34
Consensus pattern (512 bp):
AAAATCATTTAAAAAGTTCTAAAACCACTTAAAGCAAGTAACAAGGCTTTTGAAGGCATGAGTGA
CTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACATTTCCCAATGCAAACATCAAA
TTATGATATGTTTTAACCAAAAATGATAAGAAATTCAATCTAAAATCATTTATAAAGTTATAAAA
CCACTTAAAGCAAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTATCAA
TGGATAGGTTTTTCTTCACGTTTCTCGATGCAAAAACAAATTATGATCTGCTTTAACCAAAAATG
AAAAAAAATCAATTTAAAATCATTTATAAAGTTATAAATCCACTTAAAGAGAATAACAAGGCTTT
CGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAACAGAAGGTTTTCGCTTCACGTTTCCT
AATGCAAACATCAAATTATGATCTATTTTAACCAAAAATGTAAAACAAATTCAATTC
Found at i:19467070 original size:20 final size:20
Alignment explanation
Indices: 19467044--19467089 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
19467034 AATCTTACCT
* *
19467044 TTTTTCACTTGTTTCCTTGAA
1 TTTTACACTT-TTCCCTTGAA
19467065 TTTTCACACTTTTCCCTTGAA
1 TTTT-ACACTTTTCCCTTGAA
19467086 TTTT
1 TTTT
19467090 TCCACCTAGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 17 0.77
22 5 0.23
ACGTcount: A:0.15, C:0.22, G:0.07, T:0.57
Consensus pattern (20 bp):
TTTTACACTTTTCCCTTGAA
Found at i:19467091 original size:22 final size:22
Alignment explanation
Indices: 19467049--19467089 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
19467039 TACCTTTTTT
*
19467049 CACTTGTTTCCTTGAATTTTCA
1 CACTTGTTCCCTTGAATTTTCA
19467071 CACTT-TTCCCTTGAATTTT
1 CACTTGTTCCCTTGAATTTT
19467090 TCCACCTAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.17, C:0.24, G:0.07, T:0.51
Consensus pattern (22 bp):
CACTTGTTCCCTTGAATTTTCA
Found at i:19468865 original size:171 final size:171
Alignment explanation
Indices: 19467791--19470859 Score: 2356
Period size: 171 Copynumber: 18.0 Consensus size: 171
19467781 ACATATACGA
* * * *
19467791 TTATAAAACCATTTAAAGCGATTAACT-AGGCTTTTGATGGCATGAGTGACTATAAATGGACTTT
1 TTATAAAACCACTTAAAGCGAGTAA-TAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTT
* * * * * * * * *
19467855 CCTTGTTAATGGAT-GCTTTTCGCTTCACGTTTCCTAATGCAAATAACAAACTATGATATGTTTT
65 TCTTGTCAATGGATGGC-TTTCGTTTCATGTTTCCCAATGCAAACATCAAATTATGATCTGTTTT
* * * * *
19467919 AACCAAAACTG-AAAAAAAATCAAATTGAAATCATTT-ATAAG
129 AACCAAAAATGTAAAAAAATTCAATTTAAAATCATTTAAAAAG
* * * * *
19467960 ATTATAAAACCA-TCTAAAGC-AGGTAA-ATAGGCTTTTGAAGGTATTAGTGACTATAAATAGAT
1 -TTATAAAACCACT-TAAAGCGA-GTAATA-AGGCTTTCGAAGGCATGAGTGACTATAAATGGAC
* * * * * * *
19468022 TTTTGTTATCATTGGATGGCTTTTGTTTCACGTTTTCCCAATTCAAACATCAAATTATGACCTGT
62 TTTTCTTGTCAATGGATGGCTTTCGTTTCATG-TTTCCCAATGCAAACATCAAATTATGATCTGT
* * *
19468087 TTTAATCAAAAATGTAAAAGAAATTCAATTTGAAATCATTGAAAAAG
126 TTTAACCAAAAATGTAAAA-AAATTCAATTTAAAATCATTTAAAAAG
* **** * * * *
19468134 CTATAAATTTGCTTAAAGTGATTAACAAGGCTTTCGAAGGCATGAGTTACTATAAATGGA-TATT
1 TTATAAAACCACTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACT-TT
* * ** * * * * * * *
19468198 TCTTTTTAATGGATGGCTTTTTTTTCATATTTTCCAATGCAAATAGCAAGTTATGATTTGCTTTA
65 TCTTGTCAATGGATGGCTTTCGTTTCATGTTTCCCAATGCAAACATCAAATTATGATCTGTTTTA
*
19468263 ACCAAAAAT-TAAAAAAATTCAATTT-AAATCATTTATAAAG
130 ACCAAAAATGTAAAAAAATTCAATTTAAAATCATTTAAAAAG
* ** * * ** *** *
19468303 TTATAAAATCAACTTAAAAAGAATAACT-AGGCTTTCGAAGGCAGGAGTGACTGCAAAAAAATTT
1 TTATAAAA-CCACTTAAAGCGAGTAA-TAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTT
* * * * * * *
19468367 TTCTTGTCAACGGAAGGTTTTCGCTTCATGTTTCCCAATGTAAACTTCAAATTATGATCTTTTTT
64 TTCTTGTCAATGGATGGCTTTCGTTTCATGTTTCCCAATGCAAACATCAAATTATGATCTGTTTT
* * * * *
19468432 AATC-GAAATATAAAAAAATTCAATTCAAAATCATTTTAAAAG
129 AACCAAAAATGTAAAAAAATTCAATTTAAAATCATTTAAAAAG
* * * * * * *
19468474 TTCTAAAACCACTTAAAGTGAGTAACAAGGCTTTCCAAGCCATAAGTGAC--TAAATGGACTTTG
1 TTATAAAACCACTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTT
* * * * * * * * * * *
19468537 CTTGTTAATGGATAGCTTTTGCTTCTTGTTTCTCGATGAAAATATCAAATTATGATTTGTTTTAG
66 CTTGTCAATGGATGGCTTTCGTTTCATGTTTCCCAATGCAAACATCAAATTATGATCTGTTTTAA
* *
19468602 CCAAAAATGTACAAAAATTCAATTTAAAATCATTTAAAAAA
131 CCAAAAATGTAAAAAAATTCAATTTAAAATCATTTAAAAAG
** * * ** *
19468643 TTATAAATTCACTTAAAGCAAGTAACAAGGCGCAT-GAAGTCATGAGTGACTATAAATGGACTTT
1 TTATAAAACCACTTAAAGCGAGTAATAAGGC-TTTCGAAGGCATGAGTGACTATAAATGGACTTT
* **
19468707 TCTTGTCAATGGATGGCTTTCGTTTCATGTTTCCCGATGCAAACATCAAATTACAATCTGTTTTA
65 TCTTGTCAATGGATGGCTTTCGTTTCATGTTTCCCAATGCAAACATCAAATTATGATCTGTTTTA
** **
19468772 ATAAAAAATGTAACAAAAATTCAATTTAAAATTGTTTAAAAAG
130 ACCAAAAATGTAA-AAAAATTCAATTTAAAATCATTTAAAAAG
* * * * *
19468815 TTATAAATCCACTTCAAGCGAGCAATAAGGCTTCCGAAGGCATG-GTGACTATAAATAGACTTTT
1 TTATAAAACCACTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTT
* * * * *
19468879 CTTGCCAATGTATTGCTTTTTC-TTT-ATGTTTCTCAATGCAAACATCAAATTATGATCTATTTT
66 CTTGTCAATGGATGGC--TTTCGTTTCATGTTTCCCAATGCAAACATCAAATTATGATCTGTTTT
* * * * *
19468942 AACCAAAAAAGGAAAAAAATTCAATTCTAATATCATTT-ATACG
129 AACCAAAAATGTAAAAAAATTCAATT-TAAAATCATTTAAAAAG
* * * *
19468985 ATTATAAAACCATTTAAAGCAACTAGTAAGGCTTTC-AAGGGCATGAGTGACTATAAATGGACTT
1 -TTATAAAACCACTTAAAGCGAGTAATAAGGCTTTCGAA-GGCATGAGTGACTATAAATGGACTT
* ** * * * *
19469049 TTCTTGTCAATGGATGGTTTTCACTTCACGTTTCCCAATGCAAACAACAAACTATGATCTATTTT
64 TTCTTGTCAATGGATGGCTTTCGTTTCATGTTTCCCAATGCAAACATCAAATTATGATCTGTTTT
** * *
19469114 AACCAAAAA-CAAAATAAAATTCAAATTT-AAATCATTT-ATACG
129 AACCAAAAATGTAAA-AAAATTC-AATTTAAAATCATTTAAAAAG
* * ** * *
19469156 ATTATAAAACCATCCT-AAGCGAGTAA-ATAGACTTTTAAAGTCATGAGTGACTATAAATGAACT
1 -TTATAAAACCA-CTTAAAGCGAGTAATA-AGGCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * *
19469219 TTTCATGTTAATGGATGACTTTTTC-TTTACA--TTTCCCAATGCAAACATCAAATTATGATCTG
63 TTTCTTGTCAATGGATGGC--TTTCGTTT-CATGTTTCCCAATGCAAACATCAAATTATGATCTG
* * *
19469281 TTTTAACCCAAAATGTAAAAAAAAAAATTCAATTTAAAATCATTTGAAATG
125 TTTTAACCAAAAATGT----AAAAAAATTCAATTTAAAATCATTTAAAAAG
* * * * *
19469332 TTA-AAAATCCACTTAAAGCAAGTAATAAGCCTTTCAAAGGCATAAGTGACGATAAATAGG-CTT
1 TTATAAAA-CCACTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAAT-GGACTT
* * * * ** * *
19469395 TTCTTGTCAATGTATGGCTTT-TTCTTAACGTTTCCTGATGCAAATATCAAATTATGATCTATTT
64 TTCTTGTCAATGGATGGCTTTCGT-TTCATGTTTCCCAATGCAAACATCAAATTATGATCTGTTT
* * * * * * *
19469459 TAAGCAAAAAAGT-GAGAAATTCAATTTTGAAATCATTTATACAG
128 TAACCAAAAATGTAAAAAAATTCAA-TTTAAAATCATTTAAAAAG
* * * * * * *
19469503 TTATAAAACCATTTAAAGCAACTAACT-AGTCTTTGGAGGGCATGAGTGACTATAAATAGACTTT
1 TTATAAAACCACTTAAAGCGAGTAA-TAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTT
* * * *
19469567 TCTTGTCAATGGATGGTTTTTGTTTCATGTTTCCCAATGCAAACAACAAACTATGATCTGTTTTA
65 TCTTGTCAATGGATGGCTTTCGTTTCATGTTTCCCAATGCAAACATCAAATTATGATCTGTTTTA
* * * * *
19469632 ACCAAAAAT-AAAATAAAATTCAAATTGAAATCATAT-ATAAG
130 ACCAAAAATGTAAA-AAAATTCAATTTAAAATCATTTAAAAAG
* * * * *
19469673 ATTATAAAACCA-TCTGAAGCGAGGAA-ATAGGCTTTTGAAGGCATTAGTGACTATAAATAGACT
1 -TTATAAAACCACT-TAAAGCGAGTAATA-AGGCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * *
19469736 TTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCAATGGAAACATCAAATTATGATCTATTT
63 TTTCTTGTCAATGGATGGCTTTCGTTTCATGTTTCCCAATGCAAACATCAAATTATGATCTGTTT
* *
19469801 TAACC-AAAATGAAAAAAAAAATTCAATTTAAAA-CATATAAAAAG
128 TAACCAAAAATG--TAAAAAAATTCAATTTAAAATCATTTAAAAAG
* ** * * *
19469845 -T-T------ACTCAAAGTAAGTAACAAGG-TGTAT-GAAGGCATTAGTGACTAGAAATGGACTT
1 TTATAAAACCACTTAAAGCGAGTAATAAGGCT-T-TCGAAGGCATGAGTGACTATAAATGGACTT
* * ** **
19469900 TTCTTGTCAATGGATGGCTTTCGCTTCATGTTTTCTGATGCAAACATCAAATTACAATCTGTTTT
64 TTCTTGTCAATGGATGGCTTTCGTTTCATGTTTCCCAATGCAAACATCAAATTATGATCTGTTTT
** * * *
19469965 AACCAATTATGTAACCAAAATTCAATTTAAATTCGTTTAAAAAG
129 AACCAAAAATGTAA-AAAAATTCAATTTAAAATCATTTAAAAAG
** * * * * *
19470009 TTATAAATTCACTGAAAGCGAGTAATAAGGCTTCCGAAGGTATGAGTGACTATAAATAGACTTGT
1 TTATAAAACCACTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTT
* * ***
19470074 CTTGCCAATGTATGGCTTTTTC-TTT-ATGTTTCTTGATGCAAACATCAAATTATGATCTGTTTT
66 CTTGTCAATGGATGGC--TTTCGTTTCATGTTTCCCAATGCAAACATCAAATTATGATCTGTTTT
* * * *
19470137 AACCAAAAAAG-AGAAAAATTAAATTTTAAAATCATTTATACAA-
129 AACCAAAAATGTAAAAAAATTCAA-TTTAAAATCATTTA-AAAAG
* * * * *
19470180 TTATAAAACCATTTAAAGTGACTAACAAGGGTTTCG-AGTGCATGAGTGACTATAAATGGACTTT
1 TTATAAAACCACTTAAAGCGAGTAATAAGGCTTTCGAAG-GCATGAGTGACTATAAATGGACTTT
* * * * * ** * *
19470244 TCTTGTCAATTGATGGTTTTCGCTTCACGTTTTCTTATGCAAACAAT-AAACTATGATATGTTTT
65 TCTTGTCAATGGATGGCTTTCGTTTCATGTTTCCCAATGCAAAC-ATCAAATTATGATCTGTTTT
** * * * *
19470308 AACCAAAAA-CAAAATAAAATTGAAATTGAAATCATTT-ATAAG
129 AACCAAAAATGTAAA-AAAATTCAATTTAAAATCATTTAAAAAG
* * ** * *
19470350 ATTATAAAACCATCTTAAA-TGAGTAA-ATAGACTTTTAAAGTCATGAGTGACTATAAATTGACT
1 -TTATAAAACCA-CTTAAAGCGAGTAATA-AGGCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * *
19470413 TTTCGTGTCAATGGATGGCTTTCGCTTTACA--TTTCCCGAA-GCGAACATCAAATTACGATCTG
63 TTTCTTGTCAATGGATGGCTTTCG-TTT-CATGTTTCCC-AATGCAAACATCAAATTATGATCTG
* ** * *
19470475 TTTTAACCCAAAATACAAAAAGAAATCAATTTAAAATCATTTGAAATA-
125 TTTTAACCAAAAATGTAAAAA-AATTCAATTTAAAATCATTT-AAAAAG
* * * * * * * *
19470523 TTATAAATCCACTTAAGGCAAGTAACAAGGCTTTTGAAGGCATGAGTAATTGTAAATGGACTTTT
1 TTATAAAACCACTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTT
* * * ** * *
19470588 CTTGTCAATGTATGGCTTT-TTCTTCACGTTTCCTGATGTAAATATCAAATTATGATCTGTTTTA
66 CTTGTCAATGGATGGCTTTCGT-TTCATGTTTCCCAATGCAAACATCAAATTATGATCTGTTTTA
** * * * *
19470652 AGAAAAAAAG-AGAAAAATTCAATTTTAAAATCATTT-ATATG
130 ACCAAAAATGTAAAAAAATTCAA-TTTAAAATCATTTAAAAAG
* * * * *
19470693 ATTATAAAACCATTTAAACCGACTAACT-AGGCTTTCGAGGGCATGAGAGACTATAAATGGACTT
1 -TTATAAAACCACTTAAAGCGAGTAA-TAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTT
* * * *
19470757 TTCTTGTCAATGGATGGTTTTTGCTTTACAT-TTT-CCAATGCAAACAACAAATTATGATATGTT
64 TTCTTGTCAATGGATGGCTTTCG-TTT-CATGTTTCCCAATGCAAACATCAAATTATGATCTGTT
* *
19470820 TTAACCAAAAA--TAAAATAAATTTCAAATTGAAATCATTTA
127 TTAACCAAAAATGTAAAA-AAA-TTCAATTTAAAATCATTTA
19470860 TAAGATTAGA
Statistics
Matches: 2302, Mismatches: 469, Indels: 254
0.76 0.16 0.08
Matches are distributed among these distances:
162 3 0.00
163 115 0.05
164 16 0.01
165 1 0.00
166 1 0.00
168 58 0.03
169 104 0.05
170 286 0.12
171 986 0.43
172 469 0.20
173 116 0.05
174 26 0.01
175 113 0.05
176 8 0.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (171 bp):
TTATAAAACCACTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTT
CTTGTCAATGGATGGCTTTCGTTTCATGTTTCCCAATGCAAACATCAAATTATGATCTGTTTTAA
CCAAAAATGTAAAAAAATTCAATTTAAAATCATTTAAAAAG
Found at i:19469040 original size:343 final size:339
Alignment explanation
Indices: 19467791--19470859 Score: 2301
Period size: 343 Copynumber: 9.0 Consensus size: 339
19467781 ACATATACGA
* * * * * *
19467791 TTATAAAACCATTTAAAGCGATTAACTAGGCTTTTGATGGCATGAGTGACTATAAATGGACTTTC
1 TTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTT
* * * * * * * *
19467856 CTTGTTAATGGA-TGCTTTTCGCTTCACGTTTC-CTAATGCAAATAACAAACTATGATATGTTTT
66 CTTGTCAATGGATTGCTTTT-TCTTTATGTTTCTC-AATGCAAACATCAAATTATGATCTGTTTT
** * * * *
19467919 AACC-AAAACTGAAAAAAAATCAAATTGAAATCATTTATAAGATTATAAAACCATCTAAAGCAGG
129 AACCAAAAAAGGAAAAAAATTC-AATTTAAATCATTTATAAGATTATAAAACCATTTAAAGCAAG
* * * * * * * * *
19467983 TAAATAGGCTTTTGAAGGTATTAGTGACTATAAATAGATTTTTGTTATCATTGGATGGCTTTTGT
193 TATA-AGGC-TTTCAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGT
* * * *
19468048 TTCACGTTTTCCCAATTCAAACATCAAATTATGACCTGTTTTAATCAAAAATGTAAAAGAAATTC
256 TTCATG-TTTCCCAATGCAAACATCAAATTATGATCTGTTTTAACCAAAAATGTAAAA-AAATTC
* *
19468113 AATTTGAAATCATTGAAAAAG
319 AATTTAAAATCATTTAAAAAG
* **** * * *
19468134 CTATAAATTTGCTTAAAGTGATTAACAAGGCTTTCGAAGGCATGAGTTACTATAAATGGA-TATT
1 TTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACT-TT
* * * * * * * * *
19468198 TCTTTTTAATGGATGGCTTTTT-TTTCATATTT-TCCAATGCAAATAGCAAGTTATGATTTGCTT
65 TCTTGTCAATGGATTGCTTTTTCTTT-ATGTTTCT-CAATGCAAACATCAAATTATGATCTGTTT
** * *
19468261 TAACC-AAAAATTAAAAAAATTCAATTTAAATCATTTATAA-AGTTATAAAATCAACTTAAA--A
128 TAACCAAAAAAGGAAAAAAATTCAATTTAAATCATTTATAAGA-TTATAAAA-CCATTTAAAGCA
* * ** * * * * * *
19468322 AGAATAACTAGGCTTTCGAAGGCAGGAGTGACTGCAAAAAAATTTTTCTTGTCAACGGAAGGTTT
191 AGTAT-A--AGGCTTTC-AAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTT
* * * * * * *
19468387 TCGCTTCATGTTTCCCAATGTAAACTTCAAATTATGATCTTTTTTAATC-GAAATATAAAAAAAT
252 TCGTTTCATGTTTCCCAATGCAAACATCAAATTATGATCTGTTTTAACCAAAAATGTAAAAAAAT
* *
19468451 TCAATTCAAAATCATTTTAAAAG
317 TCAATTTAAAATCATTTAAAAAG
* * * * * *
19468474 TTCTAAAACCACTTAAAGTGAGTAACAAGGCTTTCCAAGCCATAAGTGAC--TAAATGGACTTTG
1 TTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTT
* * * * * * *
19468537 CTTGTTAATGGATAGCTTTTGCTTCT-TGTTTCTCGATGAAAATATCAAATTATGATTTGTTTTA
66 CTTGTCAATGGATTGCTTTTTCTT-TATGTTTCTCAATGCAAACATCAAATTATGATCTGTTTTA
* * * * * * ** *
19468601 GCCAAAAATGTACAAAAATTCAATTTAAAATCATTTAAAAAATTATAAATTCACTTAAAGCAAGT
130 ACCAAAAAAGGAAAAAAATTCAATTT-AAATCATTTATAAGATTATAAAACCATTTAAAGCAAGT
* ** * * *
19468666 AACAAGGCGCATGAAGTCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGTT
194 -ATAAGGC-TTTCAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGTT
* ** **
19468731 TCATGTTTCCCGATGCAAACATCAAATTACAATCTGTTTTAATAAAAAATGTAACAAAAATTCAA
257 TCATGTTTCCCAATGCAAACATCAAATTATGATCTGTTTTAACCAAAAATGTAA-AAAAATTCAA
**
19468796 TTTAAAATTGTTTAAAAAG
321 TTTAAAATCATTTAAAAAG
* * * * * *
19468815 TTATAAATCCACTTCAAGCGAGCAATAAGGCTTCCGAAGGCATG-GTGACTATAAATAGACTTTT
1 TTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTT
* * *
19468879 CTTGCCAATGTATTGCTTTTTCTTTATGTTTCTCAATGCAAACATCAAATTATGATCTATTTTAA
66 CTTGTCAATGGATTGCTTTTTCTTTATGTTTCTCAATGCAAACATCAAATTATGATCTGTTTTAA
* *
19468944 CCAAAAAAGGAAAAAAATTCAATTCTAATATCATTTATACGATTATAAAACCATTTAAAGCAACT
131 CCAAAAAAGGAAAAAAATTCAATT-TAA-ATCATTTATAAGATTATAAAACCATTTAAAGCAAGT
* * **
19469009 AGTAAGGCTTTCAAGGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGTTTTCACT
194 A-TAAGGCTTTCAA-GGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGTT
* * * * **
19469074 TCACGTTTCCCAATGCAAACAACAAACTATGATCTATTTTAACCAAAAA-CAAAATAAAATTCAA
257 TCATGTTTCCCAATGCAAACATCAAATTATGATCTGTTTTAACCAAAAATGTAAA-AAAATTC-A
* *
19469138 ATTT-AAATCATTT-ATACG
320 ATTTAAAATCATTTAAAAAG
* * ** * *
19469156 ATTATAAAACCATCCT-AAGCGAGTAA-ATAGACTTTTAAAGTCATGAGTGACTATAAATGAACT
1 -TTATAAAACCA-CTTAAAGCGAGTAACA-AGGCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * ** *
19469219 TTTCATGTTAATGGA-TGACTTTTTCTTTACATTTCCCAATGCAAACATCAAATTATGATCTGTT
63 TTTCTTGTCAATGGATTG-CTTTTTCTTTATGTTTCTCAATGCAAACATCAAATTATGATCTGTT
** *
19469283 TTAACCCAAAATGTAAAAAAAAAAATTCAATTTAAAATCATTTGA-AATG-TTA-AAAATCCACT
127 TTAA-CCAAAA---AAGGAAAAAAATTCAATTT-AAATCATTT-ATAA-GATTATAAAA-CCATT
* * * * *
19469345 TAAAGCAAGTAATAAGCCTTTCAAAGGCATAAGTGACGATAAATAGGCTTTTCTTGTCAATGTAT
184 TAAAGCAAGT-ATAAGGCTTTC-AAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGAT
* * * ** * * * * *
19469410 GGCTTT-TTCTTAACGTTTCCTGATGCAAATATCAAATTATGATCTATTTTAAGCAAAAAAGT-G
247 GGCTTTCGT-TTCATGTTTCCCAATGCAAACATCAAATTATGATCTGTTTTAACCAAAAATGTAA
* * * *
19469473 AGAAATTCAATTTTGAAATCATTTATACAG
311 AAAAATTCAA-TTTAAAATCATTTAAAAAG
* * * * * * * *
19469503 TTATAAAACCATTTAAAGCAACTAACTAGTCTTTGGAGGGCATGAGTGACTATAAATAGACTTTT
1 TTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTT
* * * * *
19469568 CTTGTCAATGGA-TGGTTTTTGTTTCATGTTTCCCAATGCAAACAACAAACTATGATCTGTTTTA
66 CTTGTCAATGGATTGCTTTTTCTTT-ATGTTTCTCAATGCAAACATCAAATTATGATCTGTTTTA
* * * * *
19469632 ACCAAAAATA--AAATAAAATTCAAATTGAAATCATATATAAGATTATAAAACCATCTGAAGCGA
130 ACCAAAAA-AGGAAA-AAAATTC-AATTTAAATCATTTATAAGATTATAAAACCATTTAAAGCAA
* * * *
19469695 GGAAATAGGCTTTTGAAGGCATTAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCG
192 GTATA-AGGC-TTTCAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCG
* * * *
19469760 CTTCATGTTTCCCAATGGAAACATCAAATTATGATCTATTTTAACC-AAAATGAAAAAAAAAATT
255 TTTCATGTTTCCCAATGCAAACATCAAATTATGATCTGTTTTAACCAAAAATG--TAAAAAAATT
*
19469824 CAATTTAAAA-CATATAAAAAG
318 CAATTTAAAATCATTTAAAAAG
* ** * *
19469845 -T-T------ACTCAAAGTAAGTAACAAGG-TGTAT-GAAGGCATTAGTGACTAGAAATGGACTT
1 TTATAAAACCACTTAAAGCGAGTAACAAGGCT-T-TCGAAGGCATGAGTGACTATAAATGGACTT
* ** * * **
19469900 TTCTTGTCAATGGATGGCTTTCGCTTCATGTTT-TCTGATGCAAACATCAAATTACAATCTGTTT
64 TTCTTGTCAATGGATTGCTTTTTCTTTATGTTTCTC-AATGCAAACATCAAATTATGATCTGTTT
** * * * * * ** * *
19469964 TAACCAATTATGTAACCAAAATTCAATTTAAATTCGTTTA-AAAAGTTATAAATTCACTGAAAGC
128 TAACCAAAAAAGGAA-AAAAATTCAATTTAAA-TCATTTATAAGA-TTATAAAACCATTTAAAGC
* * * * * *
19470028 GAGTAATAAGGCTTCCGAAGGTATGAGTGACTATAAATAGACTTGTCTTGCCAATGTATGGCTTT
190 AAGT-ATAAGGCTTTC-AAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGC--T
*** * *
19470093 TTC-TTT-ATGTTTCTTGATGCAAACATCAAATTATGATCTGTTTTAACCAAAAAAG-AGAAAAA
251 TTCGTTTCATGTTTCCCAATGCAAACATCAAATTATGATCTGTTTTAACCAAAAATGTAAAAAAA
* *
19470155 TTAAATTTTAAAATCATTTATACAA-
316 TTCAA-TTTAAAATCATTTA-AAAAG
* * * *
19470180 TTATAAAACCATTTAAAGTGACTAACAAGGGTTTCG-AGTGCATGAGTGACTATAAATGGACTTT
1 TTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAG-GCATGAGTGACTATAAATGGACTTT
* * * * * * * *
19470244 TCTTGTCAATTGA-TGGTTTTCGCTTCACGTTT-TCTTATGCAAACAAT-AAACTATGATATGTT
65 TCTTGTCAATGGATTGCTTTT-TCTTTATGTTTCTC-AATGCAAAC-ATCAAATTATGATCTGTT
* *
19470306 TTAACCAAAAACA--AAATAAAATTGAAATTGAAATCATTTATAAGATTATAAAACCATCTTAAA
127 TTAACCAAAAA-AGGAAA-AAAATT-CAATTTAAATCATTTATAAGATTATAAAACCAT-TTAAA
* * * * * *
19470369 TG--AGTAAATAGACTTTTAAAGTCATGAGTGACTATAAATTGACTTTTCGTGTCAATGGATGGC
188 -GCAAGTATA-AGGC-TTTCAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGC
* * * **
19470432 TTTCGCTTTACA--TTTCCCGAA-GCGAACATCAAATTACGATCTGTTTTAACCCAAAATACAAA
250 TTTCG-TTT-CATGTTTCCC-AATGCAAACATCAAATTATGATCTGTTTTAACCAAAAATGTAAA
* *
19470494 AAGAAATCAATTTAAAATCATTTGAAATA-
312 AA-AATTCAATTTAAAATCATTT-AAAAAG
* * * * * * *
19470523 TTATAAATCCACTTAAGGCAAGTAACAAGGCTTTTGAAGGCATGAGTAATTGTAAATGGACTTTT
1 TTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTT
* * * * * * *
19470588 CTTGTCAATGTATGGCTTTTTCTTCACGTTTC-CTGATGTAAATATCAAATTATGATCTGTTTTA
66 CTTGTCAATGGATTGCTTTTTCTTTATGTTTCTC-AATGCAAACATCAAATTATGATCTGTTTTA
* * * * * * *
19470652 A-GAAAAAAAGAGAAAAATTCAATTTTAAAATCATTTATATGATTATAAAACCATTTAAACCGAC
130 ACCAAAAAAGGAAAAAAATTCAA-TTT-AAATCATTTATAAGATTATAAAACCATTTAAAGCAAG
* * * * *
19470716 TA-ACTAGGCTTTCGAGGGCATGAGAGACTATAAATGGACTTTTCTTGTCAATGGATGGTTTTTG
193 TATA--AGGCTTTC-AAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCG
* *
19470780 CTTTACAT-TTT-CCAATGCAAACAACAAATTATGATATGTTTTAACCAAAAA--TAAAATAAAT
255 -TTT-CATGTTTCCCAATGCAAACATCAAATTATGATCTGTTTTAACCAAAAATGTAAAA-AAA-
* *
19470841 TTCAAATTGAAATCATTTA
316 TTCAATTTAAAATCATTTA
19470860 TAAGATTAGA
Statistics
Matches: 2169, Mismatches: 428, Indels: 260
0.76 0.15 0.09
Matches are distributed among these distances:
333 12 0.01
334 109 0.05
335 123 0.06
336 13 0.01
337 5 0.00
338 60 0.03
339 111 0.05
340 100 0.05
341 108 0.05
342 485 0.22
343 721 0.33
344 45 0.02
345 28 0.01
346 225 0.10
347 24 0.01
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (339 bp):
TTATAAAACCACTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTT
CTTGTCAATGGATTGCTTTTTCTTTATGTTTCTCAATGCAAACATCAAATTATGATCTGTTTTAA
CCAAAAAAGGAAAAAAATTCAATTTAAATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAT
AAGGCTTTCAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGTTTCAT
GTTTCCCAATGCAAACATCAAATTATGATCTGTTTTAACCAAAAATGTAAAAAAATTCAATTTAA
AATCATTTAAAAAG
Found at i:19470187 original size:677 final size:677
Alignment explanation
Indices: 19467813--19470861 Score: 2556
Period size: 677 Copynumber: 4.5 Consensus size: 677
19467803 TTAAAGCGAT
* * * * *
19467813 TAACTAGGCTTTTGATGGCATGAGTGACTATAAATGGACTTTCCTTGTTAATGGAT-GCTTTTCG
1 TAACAAGGCTTTTGAAGGCATGAGTGACTAGAAATGGACTTTTCTTGTCAATGGATGGCTTTT-G
* * * * * *
19467877 CTTCACGTTTCCTAATGCAAATAACAAACTATGATATGTTTTAACCAAAACTG-AA-AAAAAATC
65 CTTCACGTTTCCTGATGCAAACATCAAATTATGATCTGTTTTAACCAAAA-TGTAACAAAAATTC
* * * ** * **
19467940 AAATTGAAATCATTT-ATAAGATTATAAAACCA-TCTAAAGCAGGTAA-ATAGGCTTTTGAAGGT
129 AATTTAAAATCATTTAAAAAG-TTATAAATTCACT-TAAAGCAAGTAATA-AGGCTTCCGAAGGT
* * * * * * * * ** *
19468002 ATTAGTGACTATAAATAGATTTTTGTTATCATTGGATGGCTTTTGT-TTCACGTTTTCCCAATTC
191 ATGAGTGACTATAAATAGACTTTTCTTGTCAATGTATGGCTTTT-TCTTTATG-TTTCCTGATGC
* * * * *
19468066 AAACATCAAATTATGACCTGTTTTAATCAAAAATGTAAAAGAAATTCAA-TTTGAAATCATTGA-
254 AAACATCAAATTATGATCTGTTTTAA-CAAAAAAG-AGAA-AAATTCAATTTTAAAATCATTTAT
* * ***** ** * * * * *
19468129 AAAAGCTATAAATTTGCTTAAAGTGATTAACAAGGCTTTCGAAGGCATGAGTTACTATAAATGGA
316 ACAA-TTATAAAACCATTTAAAGCAACTAACTAGGCTTTCGAGGGCATGAGTGACTATAAATAGA
* * * * * * ** *
19468194 -TATTTCTTTTTAATGGATGGCTTTTT-TTTCATATTTTCCAATGCAAATAGCAAGTTATGATTT
380 CT-TTTCTTGTCAATGGATGG-TTTTTGTTTCATGTTTCCCAATGCAAACAACAAACTATGATCT
* * * * *
19468257 GCTTTAACCAAAAATTAAAAAAATTCAATTTAAATCATTTATAA-AGTTATAAAATCAACTTAA-
443 GTTTTAACCAAAAATAAAAAAAATTCAATTGAAATCATTTATAAGA-TTATAAAACCATCTTAAG
** * * ** * * * * * *
19468320 AAAGAATAACTAGGCTTTCGAAGGCAGGAGTGACTGCAAAAAAATTTTTCTTGTCAACGGAAGGT
507 CGAGAA-AA-TAGGCTTTTGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGC
* * * * * * *
19468385 TTTCGCTTCATGTTTCCCAATGTAAACTTCAAATTATGATCTTTTTTAATCGAAAT--ATAAAAA
570 TTTCGCTTCACGTTTCCCAATGGAAACATCAAATTATGATCTATTTTAACCAAAATACAAAAAAA
* * * **
19468448 AATTCAATTCAAAATCATTTTAAAAGTTCTAAAAC-CACTTAAAGTGAG
635 AATTCAATTTAAAATCATTTAAAAAG---TATAACTC-C--AAAGCAAG
** * * * * *
19468496 TAACAAGGCTTTCCAAGCCATAAGTGACT--AAATGGACTTTGCTTGTTAATGGATAGCTTTTGC
1 TAACAAGGCTTTTGAAGGCATGAGTGACTAGAAATGGACTTTTCTTGTCAATGGATGGCTTTTGC
** * * * *
19468559 TTCTTGTTT-CTCGATGAAAATATCAAATTATGATTTGTTTTAGCCAAAAATGT-ACAAAAATTC
66 TTCACGTTTCCT-GATGCAAACATCAAATTATGATCTGTTTTAACC-AAAATGTAACAAAAATTC
* * * *
19468622 AATTTAAAATCATTTAAAAAATTATAAATTCACTTAAAGCAAGTAACAAGGC-GCATGAA-GTCA
129 AATTTAAAATCATTTAAAAAGTTATAAATTCACTTAAAGCAAGTAATAAGGCTTC-CGAAGGT-A
* * *
19468685 TGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGC--TTTCGTTTCATGTTTCCCGATGCA
192 TGAGTGACTATAAATAGACTTTTCTTGTCAATGTATGGCTTTTTC-TTT-ATGTTTCCTGATGCA
** * * **
19468748 AACATCAAATTACAATCTGTTTTAATAAAAAATGTAACAAAAATTCAA-TTTAAAATTGTTTA-A
255 AACATCAAATTATGATCTGTTTTAACAAAAAA-G--AGAAAAATTCAATTTTAAAATCATTTATA
* * * * * * *
19468811 AAAGTTATAAATCCACTTCAAGCGAGC-AA-TAAGGCTTCCGAAGGCATG-GTGACTATAAATAG
317 CAA-TTATAAAACCATTTAAAGC-AACTAACT-AGGCTTTCGAGGGCATGAGTGACTATAAATAG
* * * * * * *
19468873 ACTTTTCTTGCCAATGTATTGCTTTTTCTTT-ATGTTTCTCAATGCAAACATCAAATTATGATCT
379 ACTTTTCTTGTCAATGGA-TGGTTTTTGTTTCATGTTTCCCAATGCAAACAACAAACTATGATCT
* * *
19468937 ATTTTAACCAAAAA-AGGAAAAAAATTCAATTCTAATATCATTTATACGATTATAAAACCAT-TT
443 GTTTTAACCAAAAATA--AAAAAAATTCAATT-GAA-ATCATTTATAAGATTATAAAACCATCTT
* * * *
19469000 AAAGC-A-ACTAGTAAGGC-TTTCAAGGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGG
504 -AAGCGAGA-AAAT-AGGCTTTTGAA-GGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGG
* * * * *
19469062 ATGGTTTTCACTTCACGTTTCCCAATGCAAACAACAAACTATGATCTATTTTAACCAAAA-ACAA
565 ATGGCTTTCGCTTCACGTTTCCCAATGGAAACATCAAATTATGATCTATTTTAACCAAAATACAA
* ** * * *
19469126 AATAAAATTCAAATTT-AAATCATTTATACGATTATAAAACCATCCTAAGCGAG
630 AAAAAAATTC-AATTTAAAATCATTTA-AAAAGTAT--AA-C-TCCAAAGCAAG
* * * * * * * * *
19469179 TAA-ATAGACTTTTAAAGTCATGAGTGACTATAAATGAACTTTTCATGTTAATGGATGACTTTTT
1 TAACA-AGGCTTTTGAAGGCATGAGTGACTAGAAATGGACTTTTCTTGTCAATGGATGGCTTTTG
* * ** *
19469243 CTTTACATTTCCCAATGCAAACATCAAATTATGATCTGTTTTAACCCAAAATGTAAAAAAAAAAA
65 CTTCACGTTTCCTGATGCAAACATCAAATTATGATCTGTTTTAA-CCAAAATGT---AACAAAAA
* * * * * * * *
19469308 TTCAATTTAAAATCATTTGAAATGTTAAAAATCCACTTAAAGCAAGTAATAAGCCTTTCAAAGGC
126 TTCAATTTAAAATCATTTAAAAAGTTATAAATTCACTTAAAGCAAGTAATAAGGCTTCCGAAGGT
* * * * *
19469373 ATAAGTGACGATAAATAGGCTTTTCTTGTCAATGTATGGCTTTTTCTTAACGTTTCCTGATGCAA
191 ATGAGTGACTATAAATAGACTTTTCTTGTCAATGTATGGCTTTTTCTTTATGTTTCCTGATGCAA
* * * * * *
19469438 ATATCAAATTATGATCTATTTTAAGCAAAAAAGTGAGAAATTCAATTTTGAAATCATTTATACAG
256 ACATCAAATTATGATCTGTTTTAA-CAAAAAAGAGAAAAATTCAATTTTAAAATCATTTATACAA
* *
19469503 TTATAAAACCATTTAAAGCAACTAACTAGTCTTTGGAGGGCATGAGTGACTATAAATAGACTTTT
320 TTATAAAACCATTTAAAGCAACTAACTAGGCTTTCGAGGGCATGAGTGACTATAAATAGACTTTT
19469568 CTTGTCAATGGATGGTTTTTGTTTCATGTTTCCCAATGCAAACAACAAACTATGATCTGTTTTAA
385 CTTGTCAATGGATGGTTTTTGTTTCATGTTTCCCAATGCAAACAACAAACTATGATCTGTTTTAA
* * *
19469633 CCAAAAATAAAATAAAATTCAAATTGAAATCATATATAAGATTATAAAACCATCTGAAGCGAGGA
450 CCAAAAATAAAA-AAAATTC-AATTGAAATCATTTATAAGATTATAAAACCATCTTAAGCGAGAA
*
19469698 AATAGGCTTTTGAAGGCATTAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTT
513 AATAGGCTTTTGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTT
*
19469763 CATGTTTCCCAATGGAAACATCAAATTATGATCTATTTTAACCAAAATGA-AAAAAAAAATTCAA
578 CACGTTTCCCAATGGAAACATCAAATTATGATCTATTTTAACCAAAAT-ACAAAAAAAAATTCAA
* *
19469827 TTTAAAA-CATATAAAAAGT-T-ACT-CAAAGTAAG
642 TTTAAAATCATTTAAAAAGTATAACTCCAAAGCAAG
* * *
19469859 TAACAAGG-TGTATGAAGGCATTAGTGACTAGAAATGGACTTTTCTTGTCAATGGATGGCTTTCG
1 TAACAAGGCT-TTTGAAGGCATGAGTGACTAGAAATGGACTTTTCTTGTCAATGGATGGCTTTTG
* * ** * *
19469923 CTTCATGTTTTCTGATGCAAACATCAAATTACAATCTGTTTTAACCAATTATGTAACCAAAATTC
65 CTTCACGTTTCCTGATGCAAACATCAAATTATGATCTGTTTTAACCAA-AATGTAACAAAAATTC
* * * *
19469988 AATTTAAATTCGTTTAAAAAGTTATAAATTCACTGAAAGCGAGTAATAAGGCTTCCGAAGGTATG
129 AATTTAAAATCATTTAAAAAGTTATAAATTCACTTAAAGCAAGTAATAAGGCTTCCGAAGGTATG
* * *
19470053 AGTGACTATAAATAGACTTGTCTTGCCAATGTATGGCTTTTTCTTTATGTTTCTTGATGCAAACA
194 AGTGACTATAAATAGACTTTTCTTGTCAATGTATGGCTTTTTCTTTATGTTTCCTGATGCAAACA
*
19470118 TCAAATTATGATCTGTTTTAACCAAAAAAGAGAAAAATTAAATTTTAAAATCATTTATACAATTA
259 TCAAATTATGATCTGTTTTAA-CAAAAAAGAGAAAAATTCAATTTTAAAATCATTTATACAATTA
** * * * *
19470183 TAAAACCATTTAAAGTGACTAACAAGGGTTTCGAGTGCATGAGTGACTATAAATGGACTTTTCTT
323 TAAAACCATTTAAAGCAACTAACTAGGCTTTCGAGGGCATGAGTGACTATAAATAGACTTTTCTT
* * * * * ** * *
19470248 GTCAATTGATGGTTTTCGCTTCACGTTTTCTTATGCAAACAATAAACTATGATATGTTTTAACCA
388 GTCAATGGATGGTTTTTGTTTCATGTTTCCCAATGCAAACAACAAACTATGATCTGTTTTAACCA
* * ** *
19470313 AAAACAAAATAAAATTGAAATTGAAATCATTTATAAGATTATAAAACCATCTTAAATGAGTAAAT
453 AAAATAAAA-AAAATT-CAATTGAAATCATTTATAAGATTATAAAACCATCTTAAGCGAGAAAAT
* * * * * *
19470378 AGACTTTTAAAGTCATGAGTGACTATAAATTGACTTTTCGTGTCAATGGATGGCTTTCGCTTTAC
516 AGGCTTTTGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCAC
* * * *
19470443 ATTTCCCGAA-GCG-AACATCAAATTACGATCTGTTTTAACCCAAAATACAAAAAGAAA-TCAAT
581 GTTTCCC-AATG-GAAACATCAAATTATGATCTATTTTAA-CCAAAATACAAAAAAAAATTCAAT
* * *
19470505 TTAAAATCATTTGAAATATTATAAATCCACTTAAGGCAAG
643 TTAAAATCATTT-AAAAAGTATAACTCCA---AA-GCAAG
* * * *
19470545 TAACAAGGCTTTTGAAGGCATGAGT-AATTGTAAATGGACTTTTCTTGTCAATGTATGGCTTTTT
1 TAACAAGGCTTTTGAAGGCATGAGTGACTAG-AAATGGACTTTTCTTGTCAATGGATGGCTTTTG
* * * ** *
19470609 CTTCACGTTTCCTGATGTAAATATCAAATTATGATCTGTTTTAA-GAAAA-AAAGAGAAAAATTC
65 CTTCACGTTTCCTGATGCAAACATCAAATTATGATCTGTTTTAACCAAAATGTA-ACAAAAATTC
* * ** * * * * * * *
19470672 AATTTTAAAATCATTT-ATATGATTATAAAACCATTTAAACCGACTAACT-AGGCTTTCGAGGGC
129 AA-TTTAAAATCATTTAAAAAG-TTATAAATTCACTTAAAGCAAGTAA-TAAGGCTTCCGAAGGT
* * * *
19470735 ATGAGAGACTATAAATGGACTTTTCTTGTCAATGGATGG-TTTTTGCTTTACAT-TTTCC-AATG
191 ATGAGTGACTATAAATAGACTTTTCTTGTCAATGTATGGCTTTTT-CTTT--ATGTTTCCTGATG
* * * * * * *
19470797 CAAACAACAAATTATGATATGTTTTAACCAAAAATAAAATAAATTTCAA-ATTGAAATCATTTAT
253 CAAACATCAAATTATGATCTGTTTTAACAAAAAAGAGAA-AAA-TTCAATTTTAAAATCATTTAT
19470861 A
316 A
19470862 AGATTAGAAA
Statistics
Matches: 1925, Mismatches: 344, Indels: 192
0.78 0.14 0.08
Matches are distributed among these distances:
677 445 0.23
678 22 0.01
679 11 0.01
680 171 0.09
681 185 0.10
682 192 0.10
683 102 0.05
684 36 0.02
685 198 0.10
686 107 0.06
687 17 0.01
688 186 0.10
689 234 0.12
690 15 0.01
691 4 0.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (677 bp):
TAACAAGGCTTTTGAAGGCATGAGTGACTAGAAATGGACTTTTCTTGTCAATGGATGGCTTTTGC
TTCACGTTTCCTGATGCAAACATCAAATTATGATCTGTTTTAACCAAAATGTAACAAAAATTCAA
TTTAAAATCATTTAAAAAGTTATAAATTCACTTAAAGCAAGTAATAAGGCTTCCGAAGGTATGAG
TGACTATAAATAGACTTTTCTTGTCAATGTATGGCTTTTTCTTTATGTTTCCTGATGCAAACATC
AAATTATGATCTGTTTTAACAAAAAAGAGAAAAATTCAATTTTAAAATCATTTATACAATTATAA
AACCATTTAAAGCAACTAACTAGGCTTTCGAGGGCATGAGTGACTATAAATAGACTTTTCTTGTC
AATGGATGGTTTTTGTTTCATGTTTCCCAATGCAAACAACAAACTATGATCTGTTTTAACCAAAA
ATAAAAAAAATTCAATTGAAATCATTTATAAGATTATAAAACCATCTTAAGCGAGAAAATAGGCT
TTTGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTC
CCAATGGAAACATCAAATTATGATCTATTTTAACCAAAATACAAAAAAAAATTCAATTTAAAATC
ATTTAAAAAGTATAACTCCAAAGCAAG
Found at i:19470899 original size:514 final size:508
Alignment explanation
Indices: 19467829--19470898 Score: 2381
Period size: 514 Copynumber: 6.0 Consensus size: 508
19467819 GGCTTTTGAT
* * * * *
19467829 GGCATGAGTGACTATAAATGGACTTTCCTTGTTAATGGAT-GCTTTTCGCTTCACGTTT-CCTAA
1 GGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGC-TTTCGCTTCATGTTTCCCGAA
* * * * * * *
19467892 TGCAAATAACAAACTATGATATGTTTTAACCAAAACTGA-AAAAAAA-TCAAATTGAAATCATTT
65 -GCAAACATCAAATTATGATCTATTTTAACCAAAA-T-ATAAAAAAATTCAATTTAAAATCATTT
* * * * *
19467955 ATAAGATTATAAAACCA-TCTAAAGCAGGTAA-ATAGGCTTTTGAAGGTATTAGTGACTATAAAT
127 AAAAG-TTATAAAACCACT-TAAAGCAAGTAACA-AGGCTTTCGAAGGCATGAGTGACTATAAAT
* * * * * * ** *
19468018 AGATTTTTGTTATCATTGGATGGCTTTTGT-TTCACGTTTTCCCAATTCAAACATCAAATTATGA
189 GGACTTTTCTTGTCAATGGATGGCTTTT-TCTTCATG-TTTCCTGATGCAAACATCAAATTATGA
* * * * * * ****
19468082 CCTGTTTTAATCAAAAATGTAA-AAGAAATTCAATTTGAAATCATTGA-AAAAGCTATAAATTTG
252 TCTGTTTTAA-CAAAAA---AAGAAAAAATTCAATTTAAAATCATTTATAAGA-TTATAAAACCA
* * * * * *
19468145 CTTAAAGTGATTAACAAGGCTTTCGAAGGCATGAGTTACTATAAATGGA-TATTTCTTTTTAATG
312 TTTAAAGCGAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACT-TTTCTTGTCAATG
* * * * * * *
19468209 GATGGCTTTT--TTTTCATATTTTCCAATGCAAATAGCAAGTTATGATTTGCTTTAACCAAAAAT
376 GATGG-TTTTCGCTTT-ACATTTTCCAATGCAAACATCAAATTATGATCTGTTTTAACCAAAAAT
* * ** * * *
19468272 TAAAAAAATTC-AATTTAAATCATTTATAA-AGTTATAAAATCAACTTAAAAAGAATAACTAGGC
439 AAAAAAAATTCAAATTAAAATCATTTATAAGA-TTA-AAAATCAACTTAAAGTGAGTAAATAGAC
19468335 TTTCGAA
502 TTTCGAA
* ** * * * * * *
19468342 GGCAGGAGTGACTGCAAAAAAATTTTTCTTGTCAACGGAAGGTTTTCGCTTCATGTTTCCC-AAT
1 GGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCGAA-
* * * * * *
19468406 GTAAACTTCAAATTATGATCTTTTTTAATCGAAATATAAAAAAATTCAATTCAAAATCATTTTAA
65 GCAAACATCAAATTATGATCTATTTTAACCAAAATATAAAAAAATTCAATTTAAAATCA-TTTAA
* ** * * *
19468471 AAGTTCTAAAACCACTTAAAGTGAGTAACAAGGCTTTCCAAGCCATAAGTGAC--TAAATGGACT
129 AAGTTATAAAACCACTTAAAGCAAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * * * * * * *
19468534 TTGCTTGTTAATGGATAGCTTTTGCTTCTTGTTT-CTCGATGAAAATATCAAATTATGATTTGTT
194 TTTCTTGTCAATGGATGGCTTTTTCTTCATGTTTCCT-GATGCAAACATCAAATTATGATCTGTT
* * * * * ** * *
19468598 TTAGCCAAAAATGTACAAAAATTCAATTTAAAATCATTTAAAAAATTATAAATTCACTTAAAGCA
258 TTAACAAAAAAAG-A-AAAAATTCAATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCG
** * *
19468663 AGTAACAAGGCGCAT-GAAGTCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTT
321 AGTAACAAGGC-TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGTTTT
* ** ** *
19468727 CG-TTT-CATGTTTCCCGATGCAAACATCAAATTACAATCTGTTTTAATAAAAAATGTAACAAAA
385 CGCTTTACAT-TTT-CCAATGCAAACATCAAATTATGATCTGTTTTAACCAAAAA--TAAAAAAA
* ** * * * * * * * *
19468790 ATTCAATTTAAAATTGTTTA-AAAAGTTATAAATCCACTTCAAGCGAG-CAATAAGGCTTCCGAA
446 ATTCAAATTAAAATCATTTATAAGA-TTAAAAATCAACTTAAAGTGAGTAAAT-AGACTTTCGAA
* * * ** * *
19468853 GGCATG-GTGACTATAAATAGACTTTTCTTGCCAATGTATTGCTTTTTCTTTATGTTTCTC-AAT
1 GGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCGAA-
* * *
19468916 GCAAACATCAAATTATGATCTATTTTAACCAAAAAAGGAAAAAAATTCAATTCTAATATCATTTA
65 GCAAACATCAAATTATGATCTATTTTAACCAAAATA-TAAAAAAATTCAATT-TAAAATCATTTA
* * * * **
19468981 TACGATTATAAAACCATTTAAAGCAACTAGTAAGGCTTTC-AAGGGCATGAGTGACTATAAATGG
128 AAAG-TTATAAAACCACTTAAAGCAAGTAACAAGGCTTTCGAA-GGCATGAGTGACTATAAATGG
* * ** * *
19469045 ACTTTTCTTGTCAATGGATGG-TTTTCACTTCACGTTTCCCAATGCAAACAACAAACTATGATCT
191 ACTTTTCTTGTCAATGGATGGCTTTT-TCTTCATGTTTCCTGATGCAAACATCAAATTATGATCT
* * *
19469109 ATTTTAACCAAAAACAA-AATAAAATTCAAATTT-AAATCATTTATACGATTATAAAACCATCCT
255 GTTTTAA-CAAAAA-AAGAA-AAAATTC-AATTTAAAATCATTTATAAGATTATAAAACCAT-TT
* ** * * * *
19469172 -AAGCGAGTAA-ATAGACTTTTAAAGTCATGAGTGACTATAAATGAACTTTTCATGTTAATGGAT
315 AAAGCGAGTAACA-AGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGAT
* * *
19469235 GACTTTT-TCTTTACATTTCCCAATGCAAACATCAAATTATGATCTGTTTTAACCCAAAATGTAA
379 G-GTTTTCGCTTTACATTTTCCAATGCAAACATCAAATTATGATCTGTTTTAA-CC-AAA---AA
* * * **
19469299 AAAAAAAAATTCAATTTAAAATCATTTGA-AATG-TTAAAAATCCACTTAAAGCAAGT-AATAAG
438 TAAAAAAAATTCAAATTAAAATCATTT-ATAA-GATTAAAAATCAACTTAAAGTGAGTAAAT-AG
* *
19469361 CCTTTCAAA
500 ACTTTCGAA
* * * * ** * * * *
19469370 GGCATAAGTGACGATAAATAGGCTTTTCTTGTCAATGTATGGCTTTTTCTTAACGTTTCCTGATG
1 GGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCGAAG
* * * * * *
19469435 CAAATATCAAATTATGATCTATTTTAAGCAAAAAAGT-GAGAAATTCAATTTTGAAATCATTTAT
66 CAAACATCAAATTATGATCTATTTTAACCAAAATA-TAAAAAAATTCAA-TTTAAAATCATTTA-
* * * * * * * *
19469499 ACAGTTATAAAACCATTTAAAGCAACTAACTAGTCTTTGGAGGGCATGAGTGACTATAAATAGAC
128 AAAGTTATAAAACCACTTAAAGCAAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGAC
* ** * *
19469564 TTTTCTTGTCAATGGATGG-TTTTTGTTTCATGTTTCCCAATGCAAACAACAAACTATGATCTGT
193 TTTTCTTGTCAATGGATGGCTTTTT-CTTCATGTTTCCTGATGCAAACATCAAATTATGATCTGT
* * * * *
19469628 TTTAACCAAAAATAA-AATAAAATTCAAATTGAAATCATATATAAGATTATAAAACCATCTGAAG
257 TTTAA-CAAAAA-AAGAA-AAAATTCAATTTAAAATCATTTATAAGATTATAAAACCATTTAAAG
* * * * *
19469692 CGAGGAA-ATAGGCTTTTGAAGGCATTAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCT
319 CGAGTAACA-AGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGTT
* * *
19469756 TTCGC-TT-CATGTTTCCCAATGGAAACATCAAATTATGATCTATTTTAACCAAAATGAAAAAAA
383 TTCGCTTTACAT-TTT-CCAATGCAAACATCAAATTATGATCTGTTTTAACCAAAA--ATAAAAA
* * * * * *
19469819 AAATTCAATTTAAAA-CA--TAT---A--AAAAGT-TACTCAAAGTAAGTAACA-AG-GTGTAT-
444 AAATTCAAATTAAAATCATTTATAAGATTAAAAATCAACTTAAAGTGAGTAA-ATAGACT-T-TC
19469872 GAA
506 GAA
* * * * * *
19469875 GGCATTAGTGACTAGAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTTCTGATG
1 GGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCGAAG
** * * * * * *
19469940 CAAACATCAAATTACAATCTGTTTTAACCAATTATGTAACCAAAATTCAATTTAAATTCGTTTAA
66 CAAACATCAAATTATGATCTATTTTAACCAA-AATATAA-AAAAATTCAATTTAAAATCATTT-A
** * * * * * *
19470005 AAAGTTATAAATTCACTGAAAGCGAGTAATAAGGCTTCCGAAGGTATGAGTGACTATAAATAGAC
128 AAAGTTATAAAACCACTTAAAGCAAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGAC
* * * * *
19470070 TTGTCTTGCCAATGTATGGCTTTTTCTTTATGTTTCTTGATGCAAACATCAAATTATGATCTGTT
193 TTTTCTTGTCAATGGATGGCTTTTTCTTCATGTTTCCTGATGCAAACATCAAATTATGATCTGTT
* * *
19470135 TTAACCAAAAAAGAGAAAAATTAAATTTTAAAATCATTTATACA-ATTATAAAACCATTTAAAGT
258 TTAACAAAAAAAGA-AAAAATTCAA-TTTAAAATCATTTATA-AGATTATAAAACCATTTAAAGC
* * *
19470199 GACTAACAAGGGTTTCG-AGTGCATGAGTGACTATAAATGGACTTTTCTTGTCAATTGATGGTTT
320 GAGTAACAAGGCTTTCGAAG-GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGTTT
* * ** * * *
19470263 TCGCTTCACGTTTTCTTATGCAAACAAT-AAACTATGATATGTTTTAACCAAAAACAAAATAAAA
384 TCGCTTTACATTTTCCAATGCAAAC-ATCAAATTATGATCTGTTTTAACCAAAAATAAAA-AAAA
* * * * **
19470327 TTGAAATTGAAATCATTTATAAGATTATAAAACCATCTTAAA-TGAGTAAATAGACTTTTAAA
447 TTCAAATTAAAATCATTTATAAGATTA-AAAATCAACTTAAAGTGAGTAAATAGACTTTCGAA
* * * * **
19470389 GTCATGAGTGACTATAAATTGACTTTTCGTGTCAATGGATGGCTTTCGCTTTACATTTCCCGAAG
1 GGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCGAAG
* * * * *
19470454 CGAACATCAAATTACGATCTGTTTTAACCCAAAATACAAAAAGAAATCAATTTAAAATCATTTGA
66 CAAACATCAAATTATGATCTATTTTAA-CCAAAATATAAAAA-AATTCAATTTAAAATCATTT-A
* * * * * *
19470519 AATA-TTATAAATCCACTTAAGGCAAGTAACAAGGCTTTTGAAGGCATGAGTAATTGTAAATGGA
128 AA-AGTTATAAAACCACTTAAAGCAAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGA
* * * *
19470583 CTTTTCTTGTCAATGTATGGCTTTTTCTTCACGTTTCCTGATGTAAATATCAAATTATGATCTGT
192 CTTTTCTTGTCAATGGATGGCTTTTTCTTCATGTTTCCTGATGCAAACATCAAATTATGATCTGT
* * *
19470648 TTTAAGAAAAAAAGAGAAAAATTCAATTTTAAAATCATTTATATGATTATAAAACCATTTAAACC
257 TTTAACAAAAAAAGA-AAAAATTCAA-TTTAAAATCATTTATAAGATTATAAAACCATTTAAAGC
* * * *
19470713 GACTAACTAGGCTTTCGAGGGCATGAGAGACTATAAATGGACTTTTCTTGTCAATGGATGGTTTT
320 GAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGTTTT
* * * *
19470778 TGCTTTACATTTTCCAATGCAAACAACAAATTATGATATGTTTTAACCAAAAATAAAATAAATTT
385 CGCTTTACATTTTCCAATGCAAACATCAAATTATGATCTGTTTTAACCAAAAATAAAA-AAAATT
* *
19470843 CAAATTGAAATCATTTATAAGATTAGAAAAT-AA-TCTGAAGTGAGTAAATAGACTTT
449 CAAATTAAAATCATTTATAAGATTA-AAAATCAACT-TAAAGTGAGTAAATAGACTTT
19470899 TCTTGTCAAT
Statistics
Matches: 2060, Mismatches: 392, Indels: 209
0.77 0.15 0.08
Matches are distributed among these distances:
504 8 0.00
505 126 0.06
506 241 0.12
507 25 0.01
508 12 0.01
509 124 0.06
510 108 0.05
511 94 0.05
512 70 0.03
513 138 0.07
514 638 0.31
515 38 0.02
516 22 0.01
517 325 0.16
518 88 0.04
519 3 0.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (508 bp):
GGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCCCGAAG
CAAACATCAAATTATGATCTATTTTAACCAAAATATAAAAAAATTCAATTTAAAATCATTTAAAA
GTTATAAAACCACTTAAAGCAAGTAACAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTT
TCTTGTCAATGGATGGCTTTTTCTTCATGTTTCCTGATGCAAACATCAAATTATGATCTGTTTTA
ACAAAAAAAGAAAAAATTCAATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAA
CAAGGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGTTTTCGCTTT
ACATTTTCCAATGCAAACATCAAATTATGATCTGTTTTAACCAAAAATAAAAAAAATTCAAATTA
AAATCATTTATAAGATTAAAAATCAACTTAAAGTGAGTAAATAGACTTTCGAA
Found at i:19473873 original size:19 final size:19
Alignment explanation
Indices: 19473849--19473886 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
19473839 CTGTCAAACC
*
19473849 CTCAAATTATACTCCAATA
1 CTCAAATCATACTCCAATA
19473868 CTCAAATCATACTCCAATA
1 CTCAAATCATACTCCAATA
19473887 AGTCAAATGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.42, C:0.29, G:0.00, T:0.29
Consensus pattern (19 bp):
CTCAAATCATACTCCAATA
Found at i:19474661 original size:171 final size:169
Alignment explanation
Indices: 19474221--19475080 Score: 596
Period size: 171 Copynumber: 5.0 Consensus size: 169
19474211 TCGGGCTTGA
* * * * *
19474221 CAATGGATGGCTTTTGCTTCATGTTTCTCGATGTAAACATCAAATTACGATCTGTTTTAACTAAA
1 CAATGGATGGCTTTTGCTTCATGTTTCCCAATGCAAACATCAAATTATGATCTGTTTTAACCAAA
* * * * * **
19474286 AATGTAACAAAAATTCAATTTAAAATCGTTTAAAAT-ATTATAAATCCACTTAAAGCAAGTAATA
66 AA-GAAAC-AAAATTCAATTTAAAATCATTT-ATATGATTATAAAACCATTTAAAGTGAGTAAT-
* *
19474350 AGGCTTTCAAAAGCATGAGTAACTATAAATAGAC-TTTTGTTGT
127 AGGCTTTC-AAAGCATGAGTGACTATAAATAGACTTTTTTTTGT
* * * * * * * *
19474393 CAACGTATGGCTTTTTCTTCATGTTTCTCGATGCAAACATCAAATTATGATTTATTTTAATCAAA
1 CAATGGATGGCTTTTGCTTCATGTTTCCCAATGCAAACATCAAATTATGATCTGTTTTAACCAAA
* * * *
19474458 AGGGAGA-AAAATTCAATTTTAAAATTATTTATATGATTATAAAACCATTTAAAGTGATTAACTA
66 A-AGAAACAAAATTCAA-TTTAAAATCATTTATATGATTATAAAACCATTTAAAGTGAGTAA-TA
* *
19474522 CGC-TTCAAGAGCATGAGTGACTATAAATGGACTTTTTTTTGT
128 GGCTTTCAA-AGCATGAGTGACTATAAATAGACTTTTTTTTGT
* * * *
19474564 CAATGGATGGTTTTTGCTTCACGTTTCCCAATGCAAACAACAAACTATGATCTGTTTTAACCAAA
1 CAATGGATGGCTTTTGCTTCATGTTTCCCAATGCAAACATCAAATTATGATCTGTTTTAACCAAA
* * * * * * **
19474629 AACAAACTAAAATTCAAATTGAAATCATTTATAAGATTTTAAAACCATCTGTAGTGAGTAAATAG
66 AAGAAAC-AAAATTCAATTTAAAATCATTTATATGATTATAAAACCATTTAAAGTGAGT-AATAG
* * * * * *
19474694 GCTTTTAAAGGTATTAGTGATTATAAATAGACTTGTCTTT-T
129 GCTTTCAAA-GCATGAGTGACTATAAATAGACTTTTTTTTGT
* * * * *
19474735 CGATGGATGCCTTTTGTTTCATGTTTCCCAATGCAAACATC-AATTATGATATTTTTTAACCAAA
1 CAATGGATGGCTTTTGCTTCATGTTTCCCAATGCAAACATCAAATTATGATCTGTTTTAACCAAA
* * ** * ** * *
19474799 AATGTAAAAAGAAAACTCAATTTAAAATCATTTA-AAAAGTTATAAATCCGCTTAAAGCGATTAA
66 AA-G---AAACAAAATTCAATTTAAAATCATTTATATGA-TTATAAAACCATTTAAAGTGAGTAA
* * * * * * *
19474863 CAAGGCTTTCAAAGGCATGGGTTACTATAACTGGA-ATTTTCTTGT
126 -TAGGCTTTCAAA-GCATGAGTGACTATAAATAGACTTTTTTTTGT
* ** * ** ** * * * **
19474908 CAATGGATCGG-TATCCCATCACATTTTTCGATGCAAA-AACAAGTTATGATCTACTTTAACCAA
1 CAATGGAT-GGCTTTTGCTTCATGTTTCCCAATGCAAACATCAAATTATGATCTGTTTTAACCAA
* * * * * * *
19474971 AAATAAAAAAAAATT-AATTTAAAATCATTTATA-AAGTTATAAAACCACTTAAAGAGAATAACA
65 AAA-GAAACAAAATTCAATTTAAAATCATTTATATGA-TTATAAAACCATTTAAAGTGAGTAA-T
* * *
19475034 AGGCTTTCGAAGGCATGAGTGA-TATAACTAGAC-TTTTCTTGT
127 AGGCTTTC-AAAGCATGAGTGACTATAAATAGACTTTTTTTTGT
19475076 CAATG
1 CAATG
19475081 AAAGGTTTTC
Statistics
Matches: 544, Mismatches: 121, Indels: 50
0.76 0.17 0.07
Matches are distributed among these distances:
168 23 0.04
169 60 0.11
170 71 0.13
171 171 0.31
172 110 0.20
173 105 0.19
174 4 0.01
ACGTcount: A:0.38, C:0.14, G:0.13, T:0.35
Consensus pattern (169 bp):
CAATGGATGGCTTTTGCTTCATGTTTCCCAATGCAAACATCAAATTATGATCTGTTTTAACCAAA
AAGAAACAAAATTCAATTTAAAATCATTTATATGATTATAAAACCATTTAAAGTGAGTAATAGGC
TTTCAAAGCATGAGTGACTATAAATAGACTTTTTTTTGT
Found at i:19490853 original size:19 final size:21
Alignment explanation
Indices: 19490816--19490855 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
19490806 TTTAATTTTT
19490816 TAATTTTTTAAAATATAATAA
1 TAATTTTTTAAAATATAATAA
19490837 TAATTTTTT-AAAT-TAATAA
1 TAATTTTTTAAAATATAATAA
19490856 AGAAAAAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 6 0.32
20 4 0.21
21 9 0.47
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (21 bp):
TAATTTTTTAAAATATAATAA
Found at i:19493564 original size:34 final size:34
Alignment explanation
Indices: 19493521--19493668 Score: 208
Period size: 34 Copynumber: 4.4 Consensus size: 34
19493511 TTTTGGATGT
*
19493521 AGAAAAATTGGAGCTGGTTGCTGCCAATTTGTGC
1 AGAAAAATTGGAGCTGTTTGCTGCCAATTTGTGC
** *
19493555 AGAAAAATTGGAGCTGTTTATTGCCAATTTGTGT
1 AGAAAAATTGGAGCTGTTTGCTGCCAATTTGTGC
* *
19493589 AGAAAAATTAGAGTTGTTTGCTGCCAATTTGTGC
1 AGAAAAATTGGAGCTGTTTGCTGCCAATTTGTGC
* *
19493623 A-AACAAATTAGAGCTATTTGCTGCCAATTTGTGC
1 AGAA-AAATTGGAGCTGTTTGCTGCCAATTTGTGC
19493657 AGAAAAATTGGA
1 AGAAAAATTGGA
19493669 CAGTATTATG
Statistics
Matches: 100, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
33 2 0.02
34 96 0.96
35 2 0.02
ACGTcount: A:0.32, C:0.12, G:0.24, T:0.32
Consensus pattern (34 bp):
AGAAAAATTGGAGCTGTTTGCTGCCAATTTGTGC
Found at i:19493869 original size:25 final size:24
Alignment explanation
Indices: 19493815--19493869 Score: 56
Period size: 25 Copynumber: 2.2 Consensus size: 24
19493805 GAAATGAAAA
**
19493815 AAAAAAGAATGGGCATGGCCCAAT
1 AAAAAAGAATGGGCATAACCCAAT
* * *
19493839 AGAAAATAAGTGGGCATAACCCACT
1 AAAAAAGAA-TGGGCATAACCCAAT
19493864 AAAAAA
1 AAAAAA
19493870 AAATAGAAAA
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
24 7 0.29
25 17 0.71
ACGTcount: A:0.51, C:0.16, G:0.20, T:0.13
Consensus pattern (24 bp):
AAAAAAGAATGGGCATAACCCAAT
Found at i:19499237 original size:2 final size:2
Alignment explanation
Indices: 19499230--19499290 Score: 97
Period size: 2 Copynumber: 31.0 Consensus size: 2
19499220 GATAGTCTTC
19499230 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
19499272 AT TT AT AT AT GT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT
19499291 GCTTGTAAGA
Statistics
Matches: 54, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
1 1 0.02
2 53 0.98
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.51
Consensus pattern (2 bp):
AT
Found at i:19499780 original size:13 final size:15
Alignment explanation
Indices: 19499757--19499788 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
19499747 TTCACTGAAA
19499757 AATCAATACATAA-T
1 AATCAATACATAATT
19499771 AATC-ATACATAATT
1 AATCAATACATAATT
19499785 AATC
1 AATC
19499789 GTTTACTTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 8 0.47
14 9 0.53
ACGTcount: A:0.53, C:0.16, G:0.00, T:0.31
Consensus pattern (15 bp):
AATCAATACATAATT
Found at i:19506338 original size:26 final size:26
Alignment explanation
Indices: 19506302--19506354 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19506292 TCCTTATTTT
19506302 GCCACGTGTCAGCATCCAGAGTGTTG
1 GCCACGTGTCAGCATCCAGAGTGTTG
19506328 GCCACGTGTCAGCATCCAGAGTGTTG
1 GCCACGTGTCAGCATCCAGAGTGTTG
19506354 G
1 G
19506355 GTTGTGATTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.19, C:0.26, G:0.32, T:0.23
Consensus pattern (26 bp):
GCCACGTGTCAGCATCCAGAGTGTTG
Found at i:19508541 original size:21 final size:21
Alignment explanation
Indices: 19508515--19508570 Score: 103
Period size: 21 Copynumber: 2.7 Consensus size: 21
19508505 AATAAAGAAG
19508515 CCATGTCACCAATTTTATAGT
1 CCATGTCACCAATTTTATAGT
19508536 CCATGTCACCAATTTTATAGT
1 CCATGTCACCAATTTTATAGT
*
19508557 CCATGTCATCAATT
1 CCATGTCACCAATT
19508571 CAATGGTTCA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.29, C:0.25, G:0.09, T:0.38
Consensus pattern (21 bp):
CCATGTCACCAATTTTATAGT
Found at i:19518506 original size:65 final size:65
Alignment explanation
Indices: 19518402--19518544 Score: 286
Period size: 65 Copynumber: 2.2 Consensus size: 65
19518392 AGACAAGTTA
19518402 CAATGCTTTATTACAGTTGTGGCTCAAGTCACTCAATCACAAACTCTCAAGAATTCTCAAAAATT
1 CAATGCTTTATTACAGTTGTGGCTCAAGTCACTCAATCACAAACTCTCAAGAATTCTCAAAAATT
19518467 CAATGCTTTATTACAGTTGTGGCTCAAGTCACTCAATCACAAACTCTCAAGAATTCTCAAAAATT
1 CAATGCTTTATTACAGTTGTGGCTCAAGTCACTCAATCACAAACTCTCAAGAATTCTCAAAAATT
19518532 CAATGCTTTATTA
1 CAATGCTTTATTA
19518545 AAAATCAACT
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 78 1.00
ACGTcount: A:0.35, C:0.22, G:0.10, T:0.32
Consensus pattern (65 bp):
CAATGCTTTATTACAGTTGTGGCTCAAGTCACTCAATCACAAACTCTCAAGAATTCTCAAAAATT
Found at i:19524383 original size:22 final size:23
Alignment explanation
Indices: 19524357--19524417 Score: 63
Period size: 27 Copynumber: 2.5 Consensus size: 23
19524347 TTATTAGATT
19524357 TTTTAAATATTAATAATCTAA-AA
1 TTTTAAATATTAATAAT-TAATAA
19524380 TTTAATTAAAATATTAATAATTAATAA
1 -TT--TT-AAATATTAATAATTAATAA
19524407 -TTTAAATATTA
1 TTTTAAATATTA
19524418 NNNNNNNNNN
Statistics
Matches: 33, Mismatches: 0, Indels: 10
0.77 0.00 0.23
Matches are distributed among these distances:
22 8 0.24
23 2 0.06
24 2 0.06
25 1 0.03
26 5 0.15
27 15 0.45
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (23 bp):
TTTTAAATATTAATAATTAATAA
Found at i:19529278 original size:21 final size:21
Alignment explanation
Indices: 19529252--19529305 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
19529242 GGAAACATCA
19529252 TTGTTGTGCATCAATTTAGT-G
1 TTGTTGTGCATCAATTTA-TCG
**
19529273 TTGTTGTGCATTGATTTATCG
1 TTGTTGTGCATCAATTTATCG
19529294 TTGTTGTGCATC
1 TTGTTGTGCATC
19529306 TATGCACTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 1 0.03
21 28 0.97
ACGTcount: A:0.15, C:0.11, G:0.24, T:0.50
Consensus pattern (21 bp):
TTGTTGTGCATCAATTTATCG
Found at i:19529499 original size:6 final size:6
Alignment explanation
Indices: 19529488--19529516 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
19529478 AATTAGTGGT
19529488 GTTAAG GTTAAG GTTAAG GTTAAG GTTAA
1 GTTAAG GTTAAG GTTAAG GTTAAG GTTAA
19529517 AGTTTGGGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.34, C:0.00, G:0.31, T:0.34
Consensus pattern (6 bp):
GTTAAG
Found at i:19532972 original size:25 final size:25
Alignment explanation
Indices: 19532944--19533002 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 25
19532934 TCATAACTAC
* *
19532944 GTATATCAACTCGTGGCCCT-GCCAT
1 GTATATCAACCCATGG-CCTGGCCAT
*
19532969 GTATAACAACCCATGGCCTGGCCAT
1 GTATATCAACCCATGGCCTGGCCAT
19532994 GTAATATCA
1 GT-ATATCA
19533003 CAGACCGTGG
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
24 3 0.11
25 20 0.71
26 5 0.18
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (25 bp):
GTATATCAACCCATGGCCTGGCCAT
Found at i:19562252 original size:19 final size:18
Alignment explanation
Indices: 19562218--19562253 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
19562208 GAAATTAGAA
*
19562218 TATTTTATTGAATAGTTT
1 TATTTTATTAAATAGTTT
19562236 TATTTTATTCAAATAGTT
1 TATTTTATT-AAATAGTT
19562254 GCAATATCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.31, C:0.03, G:0.08, T:0.58
Consensus pattern (18 bp):
TATTTTATTAAATAGTTT
Found at i:19565866 original size:6 final size:6
Alignment explanation
Indices: 19565857--19565886 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
19565847 TTTAAGATTA
19565857 AGTTTT AGTTTT AGTTTT AGTTATT AGTTT
1 AGTTTT AGTTTT AGTTTT AGTT-TT AGTTT
19565887 ATTAGTTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 17 0.74
7 6 0.26
ACGTcount: A:0.20, C:0.00, G:0.17, T:0.63
Consensus pattern (6 bp):
AGTTTT
Found at i:19568370 original size:80 final size:80
Alignment explanation
Indices: 19568285--19568488 Score: 248
Period size: 80 Copynumber: 2.5 Consensus size: 80
19568275 TATGACTATA
* * * * * **
19568285 TCAACACATACATCTCATGACATACATTTCATAATTTCACAAATCATTCACATGCTTAGCTTATA
1 TCAACACATACATCTCATGGCATACATGTCATAATCTCATAAATCATCCACATGCTTAGCCCATA
*
19568350 GTGTACATGATATGC
66 GTGTACATGACATGC
* * *
19568365 TCAACATAAACGA-CTCATGGCATACATGTCATAATCTCATAATTCATCCACATGCTTAGCCCAT
1 TCAACACATAC-ATCTCATGGCATACATGTCATAATCTCATAAATCATCCACATGCTTAGCCCAT
**
19568429 AGTGTACATGACATTT
65 AGTGTACATGACATGC
* * *
19568445 TCAATACATACATTTCATGGTATACATGTCATAATCTCATAAAT
1 TCAACACATACATCTCATGGCATACATGTCATAATCTCATAAAT
19568489 GGAACTCATG
Statistics
Matches: 103, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
79 1 0.01
80 101 0.98
81 1 0.01
ACGTcount: A:0.35, C:0.23, G:0.09, T:0.33
Consensus pattern (80 bp):
TCAACACATACATCTCATGGCATACATGTCATAATCTCATAAATCATCCACATGCTTAGCCCATA
GTGTACATGACATGC
Found at i:19569566 original size:69 final size:69
Alignment explanation
Indices: 19569425--19569582 Score: 194
Period size: 69 Copynumber: 2.3 Consensus size: 69
19569415 ACCCGATGTA
* *
19569425 GGGGTAAGAATACCACATGGTCAAGTTAGGCAAATGTACTATCTTTTCCCCTCTTAAAATCTAGT
1 GGGGTAAGAATACCACAGGGTCAAGTTAGGCAAATGTACTATCTTTTCCCCTCTTAAAACCTAGT
19569490 GTGG
66 GTGG
* * ** * * *
19569494 GGGGTAAGAATATCACAGGGTCAAGTTGGGCAAATGTACCTATCTTTTCCTTTTTTAAAGCCTTG
1 GGGGTAAGAATACCACAGGGTCAAGTTAGGCAAATGTA-CTATCTTTTCCCCTCTTAAAACCTAG
19569559 TGT-G
65 TGTGG
*
19569563 GGGGTAA-AAGTACCATAGGG
1 GGGGTAAGAA-TACCACAGGG
19569583 ATGAATCGGG
Statistics
Matches: 76, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
68 2 0.03
69 51 0.67
70 23 0.30
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.30
Consensus pattern (69 bp):
GGGGTAAGAATACCACAGGGTCAAGTTAGGCAAATGTACTATCTTTTCCCCTCTTAAAACCTAGT
GTGG
Found at i:19571408 original size:27 final size:28
Alignment explanation
Indices: 19571366--19571424 Score: 93
Period size: 27 Copynumber: 2.1 Consensus size: 28
19571356 CTTATTTTAT
* *
19571366 TTTATTTTTAAATATTAATCATTGATAA
1 TTTATTTTAAAATATTAATAATTGATAA
19571394 TTTA-TTTAAAATATTAATAATTGATAA
1 TTTATTTTAAAATATTAATAATTGATAA
19571421 TTTA
1 TTTA
19571425 AATATTAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
27 25 0.86
28 4 0.14
ACGTcount: A:0.42, C:0.02, G:0.03, T:0.53
Consensus pattern (28 bp):
TTTATTTTAAAATATTAATAATTGATAA
Found at i:19571470 original size:42 final size:42
Alignment explanation
Indices: 19571394--19571486 Score: 116
Period size: 42 Copynumber: 2.2 Consensus size: 42
19571384 TCATTGATAA
* *
19571394 TTTATTTAAAATATTAATAATTGATAATTTAAATATTAATAG
1 TTTATTTAAAATATTAATAATTAATAATTTAAATATTAAAAG
* * * *
19571436 TTTATTTATAAT-TTAATCATTAATATTTTAAAATATTAAAAT
1 TTTATTTAAAATATTAATAATTAATAATTT-AAATATTAAAAG
19571478 TTTATTTAA
1 TTTATTTAA
19571487 TTTAAATCAT
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
41 14 0.33
42 29 0.67
ACGTcount: A:0.45, C:0.01, G:0.02, T:0.52
Consensus pattern (42 bp):
TTTATTTAAAATATTAATAATTAATAATTTAAATATTAAAAG
Found at i:19571520 original size:145 final size:144
Alignment explanation
Indices: 19571225--19571519 Score: 364
Period size: 145 Copynumber: 2.0 Consensus size: 144
19571215 TTTTATTAAT
*
19571225 TTTTTAAATATTAATAATTTATAATTTAATTAAAATATTAATAACTAATAATTTAAATATTAATA
1 TTTTTAAATATTAATAATTGATAATTTAATTAAAATATTAATAACTAATAATTTAAATATTAATA
* * * * *
19571290 TCCTATTTATAATTTAATCATTAATATTTTATTTAATTTCAATATTATTATGATTAATTATTTTA
66 TCCTATTTATAATTTAATCATTAATATTTTA-TAAATTTAAATATTATTATAATTAATCATATTA
* * *
19571355 TCTTATTTTATTTTA
130 TATCATATTATTTTA
* * * *
19571370 TTTTTAAATATTAATCATTGATAATTTATTTAAAATATTAATAATTGATAATTTAAATATTAATA
1 TTTTTAAATATTAATAATTGATAATTTAATTAAAATATTAATAACTAATAATTTAAATATTAATA
* *
19571435 GT-TTATTTATAATTTAATCATTAATATTTTA-AAATATTAAAATTTTATT-TAATTTAAATCAT
66 -TCCTATTTATAATTTAATCATTAATATTTTATAAAT-TT-AAATATTATTATAA-TT-AATCAT
19571497 ATTATGATCA-ATTATTTTA
126 ATTAT-ATCATATTATTTTA
19571516 TTTT
1 TTTT
19571520 ATTTTATTTG
Statistics
Matches: 129, Mismatches: 15, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
143 3 0.02
144 4 0.03
145 98 0.76
146 22 0.17
147 2 0.02
ACGTcount: A:0.41, C:0.03, G:0.02, T:0.54
Consensus pattern (144 bp):
TTTTTAAATATTAATAATTGATAATTTAATTAAAATATTAATAACTAATAATTTAAATATTAATA
TCCTATTTATAATTTAATCATTAATATTTTATAAATTTAAATATTATTATAATTAATCATATTAT
ATCATATTATTTTA
Found at i:19571703 original size:22 final size:22
Alignment explanation
Indices: 19571678--19571740 Score: 56
Period size: 27 Copynumber: 2.6 Consensus size: 22
19571668 TATTAGATTT
19571678 TTTAAATATTAATAA-TATAGAA
1 TTTAAATATTAATAACTA-AGAA
*
19571700 TTTAAGAAAAATATTAATAACTAATAA
1 TTT----A-AATATTAATAACTAAGAA
19571727 TTTAAATATTAATA
1 TTTAAATATTAATA
19571741 TTTTTTTATA
Statistics
Matches: 34, Mismatches: 1, Indels: 12
0.72 0.02 0.26
Matches are distributed among these distances:
22 13 0.38
23 1 0.03
26 1 0.03
27 17 0.50
28 2 0.06
ACGTcount: A:0.56, C:0.02, G:0.03, T:0.40
Consensus pattern (22 bp):
TTTAAATATTAATAACTAAGAA
Found at i:19571757 original size:40 final size:39
Alignment explanation
Indices: 19571713--19571796 Score: 107
Period size: 40 Copynumber: 2.1 Consensus size: 39
19571703 AAGAAAAATA
*
19571713 TTAATAACTAATAATTT-AAATATTAATATTTTTTTATAAT
1 TTAATAACTAAT-ATTTAAAATATTAATATTTTATT-TAAT
* *
19571753 TTAATCATTAATATTTGAAAATATTAATATTTTATTTAAT
1 TTAATAACTAATATTT-AAAATATTAATATTTTATTTAAT
19571793 TTAA
1 TTAA
19571797 ATATTATTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
39 4 0.10
40 18 0.46
41 17 0.44
ACGTcount: A:0.44, C:0.02, G:0.01, T:0.52
Consensus pattern (39 bp):
TTAATAACTAATATTTAAAATATTAATATTTTATTTAAT
Found at i:19571882 original size:27 final size:27
Alignment explanation
Indices: 19571832--19571885 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
19571822 TTATTTTATT
**
19571832 TTTAAAATATTAATAATTGGTAATTTA
1 TTTAAAATATTAATAATTAATAATTTA
* *
19571859 TTTAAAATATTTATAGTTAATAATTTA
1 TTTAAAATATTAATAATTAATAATTTA
19571886 ATTATTAATA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (27 bp):
TTTAAAATATTAATAATTAATAATTTA
Found at i:19572007 original size:114 final size:112
Alignment explanation
Indices: 19571753--19572026 Score: 295
Period size: 114 Copynumber: 2.4 Consensus size: 112
19571743 TTTTTATAAT
*
19571753 TTAATCATTAAT-ATTTGAAAATATTAATATTTTATT-TAATTTAAATATTATTATGATTAATTT
1 TTAATAATTAATAATTT--AAATATTAATATTTTATTATAATTTAAATATTATTATGATTAATTT
* *
19571816 TTTATTTTATTTTATTTTTAAAATATTAATAATTGGTAATTTATTTAAAATA
64 TTTAATTTATTTTATTTTTAAAATAGTAATAATTGGTAATTTATTT---ATA
* * * * * *
19571868 TTTATAGTTAATAATTTAATTATTAATATTTTATATATAATTTAAATGTTATTATGCTTATTTAT
1 TTAATAATTAATAATTTAAATATTAATATTTTAT-TATAATTTAAATATTATTATGATTA-AT-T
** **
19571933 TTTTAATTTATTTTATTTTT-ATGTAGTAATAATTTTTTAATTTATTT-TA
63 TTTTAATTTATTTTATTTTTAAAATAGTAATAA-TTGGTAATTTATTTATA
* *
19571982 TTAATAATTGATGATTTAAATATTAATATTTTATTAATAATTTAA
1 TTAATAATTAATAATTTAAATATTAATATTTTATT-ATAATTTAA
19572027 TTTTTAAGAT
Statistics
Matches: 134, Mismatches: 18, Indels: 15
0.80 0.11 0.09
Matches are distributed among these distances:
113 1 0.01
114 56 0.42
115 10 0.07
116 25 0.19
117 10 0.07
118 32 0.24
ACGTcount: A:0.38, C:0.01, G:0.04, T:0.57
Consensus pattern (112 bp):
TTAATAATTAATAATTTAAATATTAATATTTTATTATAATTTAAATATTATTATGATTAATTTTT
TAATTTATTTTATTTTTAAAATAGTAATAATTGGTAATTTATTTATA
Found at i:19572057 original size:42 final size:40
Alignment explanation
Indices: 19571996--19572101 Score: 140
Period size: 41 Copynumber: 2.6 Consensus size: 40
19571986 TAATTGATGA
*
19571996 TTTAAATATTAATATTTTATTAATAATTTAATTTTTAAGAT
1 TTTAAATATTAATATTTTATTAATAATTTAA-TATTAAGAT
* * *
19572037 TTTAAACTACTAATATTTTATTTATAATTTAATATTAATAT
1 TTTAAA-TATTAATATTTTATTAATAATTTAATATTAAGAT
*
19572078 TTCAAAATATTAATATTTTATTAA
1 TT-TAAATATTAATATTTTATTAA
19572102 AAGTCAGAAT
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
41 30 0.54
42 26 0.46
ACGTcount: A:0.42, C:0.03, G:0.01, T:0.54
Consensus pattern (40 bp):
TTTAAATATTAATATTTTATTAATAATTTAATATTAAGAT
Found at i:19572747 original size:34 final size:35
Alignment explanation
Indices: 19572680--19572748 Score: 97
Period size: 34 Copynumber: 2.0 Consensus size: 35
19572670 GAGACAATAA
*
19572680 TTATCTTAATAAATATTTCTCATTTTAAGATAATTC
1 TTATCTTAATAAATATTTAT-ATTTTAAGATAATTC
19572716 TTATCTT-ATAAATATTTAT-TTATTAAGATAATT
1 TTATCTTAATAAATATTTATATT-TTAAGATAATT
19572749 TTTGACTTAT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
33 2 0.06
34 11 0.35
35 11 0.35
36 7 0.23
ACGTcount: A:0.38, C:0.07, G:0.03, T:0.52
Consensus pattern (35 bp):
TTATCTTAATAAATATTTATATTTTAAGATAATTC
Found at i:19589451 original size:36 final size:36
Alignment explanation
Indices: 19589411--19589586 Score: 158
Period size: 36 Copynumber: 4.9 Consensus size: 36
19589401 TTGAAAATTA
*
19589411 GTGAGGGTTATCGCTTGATCCCATGAAATAG-CAAGT
1 GTGAGGGTTATCGCTTGATCCCATGAAAAAGTC-AGT
* * *
19589447 GTGAGGGTTATCACTTGATCCAATG-AAAAGGCAAGT
1 GTGAGGGTTATCGCTTGATCCCATGAAAAAGTC-AGT
* ** * * * *
19589483 GTAAATGTTATCTCTTGATCGCATTAAAAAGTCGGT
1 GTGAGGGTTATCGCTTGATCCCATGAAAAAGTCAGT
* * *
19589519 GTAAGGGTTATTGCTTGATCCCATGAAAAAGTCACT
1 GTGAGGGTTATCGCTTGATCCCATGAAAAAGTCAGT
* * * *
19589555 GTGAAGGTTATCGCTTAATCCTATTAAAAAGT
1 GTGAGGGTTATCGCTTGATCCCATGAAAAAGT
19589587 AAGAATTCCT
Statistics
Matches: 112, Mismatches: 26, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
35 4 0.04
36 102 0.91
37 6 0.05
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (36 bp):
GTGAGGGTTATCGCTTGATCCCATGAAAAAGTCAGT
Found at i:19596365 original size:63 final size:62
Alignment explanation
Indices: 19596298--19596453 Score: 179
Period size: 63 Copynumber: 2.5 Consensus size: 62
19596288 GATGTAACCG
* **
19596298 TGCATGTGCGCAGTGGGTAGTGCATATGCCAATTGAATGACGATGTTGTGACAAC-TACAACTA
1 TGCATGTGCG-AGTGGGCAGTGCATATGCCAATCAAATGACGATGTTGTGAC-ACTTACAACTA
* * ** * *
19596361 TGCATATGCGGAGTGGGCAGTGCATATGTCGGTCAAATGATGATGTTGTGACACTTACAACTG
1 TGCATGTGC-GAGTGGGCAGTGCATATGCCAATCAAATGACGATGTTGTGACACTTACAACTA
*
19596424 TGCATGTGCAGAGTGGGCAGTGCACATGCC
1 TGCATGTGC-GAGTGGGCAGTGCATATGCC
19596454 GGTAATGATG
Statistics
Matches: 78, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
62 2 0.03
63 75 0.96
64 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (62 bp):
TGCATGTGCGAGTGGGCAGTGCATATGCCAATCAAATGACGATGTTGTGACACTTACAACTA
Found at i:19600379 original size:15 final size:15
Alignment explanation
Indices: 19600356--19600385 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
19600346 GGGGTGAGTC
19600356 TCATAGACTTAGTGA
1 TCATAGACTTAGTGA
*
19600371 TCATCGACTTAGTGA
1 TCATAGACTTAGTGA
19600386 GTAAGGCGTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (15 bp):
TCATAGACTTAGTGA
Found at i:19601395 original size:22 final size:22
Alignment explanation
Indices: 19601368--19601410 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
19601358 TTTTTTCTCC
*
19601368 TTTCTCCTTTGTCCTTTCTTTT
1 TTTCTCCTTTCTCCTTTCTTTT
* *
19601390 TTTCTCTTTTCTTCTTTCTTT
1 TTTCTCCTTTCTCCTTTCTTT
19601411 CAAGTCGATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.00, C:0.26, G:0.02, T:0.72
Consensus pattern (22 bp):
TTTCTCCTTTCTCCTTTCTTTT
Found at i:19602551 original size:18 final size:18
Alignment explanation
Indices: 19602511--19602558 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 18
19602501 TTAATATTTT
19602511 AATATTATTTTATTAATAA
1 AATATTATTTTATT-ATAA
19602530 AATATTATTTTATT-TCAA
1 AATATTATTTTATTAT-AA
*
19602548 AATATTCTTTT
1 AATATTATTTT
19602559 CACCCATTAC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
17 1 0.04
18 12 0.44
19 14 0.52
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (18 bp):
AATATTATTTTATTATAA
Found at i:19610155 original size:22 final size:22
Alignment explanation
Indices: 19610130--19610178 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
19610120 TCTTTTTTAG
19610130 CTTTCCCTCTTTCTCTTTTCTC
1 CTTTCCCTCTTTCTCTTTTCTC
** *
19610152 CTTTCTTTCTTTCTCTTTTCTT
1 CTTTCCCTCTTTCTCTTTTCTC
19610174 CTTTC
1 CTTTC
19610179 TTTCAAGCTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (22 bp):
CTTTCCCTCTTTCTCTTTTCTC
Found at i:19610164 original size:15 final size:14
Alignment explanation
Indices: 19610146--19610179 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
19610136 CTCTTTCTCT
19610146 TTTCTCCTTTCTTTC
1 TTTCTCCTTTC-TTC
*
19610161 TTTCTCTTTTCTTC
1 TTTCTCCTTTCTTC
19610175 TTTCT
1 TTTCT
19610180 TTCAAGCTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (14 bp):
TTTCTCCTTTCTTC
Found at i:19610179 original size:22 final size:22
Alignment explanation
Indices: 19610137--19610182 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
19610127 TAGCTTTCCC
19610137 TCTTTCTCTTTTCTCCTTTCTT
1 TCTTTCTCTTTTCTCCTTTCTT
*
19610159 TCTTTCTCTTTTCTTCTTTCTT
1 TCTTTCTCTTTTCTCCTTTCTT
19610181 TC
1 TC
19610183 AAGCTGATTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (22 bp):
TCTTTCTCTTTTCTCCTTTCTT
Found at i:19611281 original size:32 final size:32
Alignment explanation
Indices: 19611245--19611306 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
19611235 ATCCTCCTTC
*
19611245 ATGACTAGTCTTAATGATAAATAAAATAATTT
1 ATGACTAGTCTTAATAATAAATAAAATAATTT
19611277 ATGACTAGTCTTAATAATAAATAAAATAAT
1 ATGACTAGTCTTAATAATAAATAAAATAAT
19611307 AATATTTTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.50, C:0.06, G:0.08, T:0.35
Consensus pattern (32 bp):
ATGACTAGTCTTAATAATAAATAAAATAATTT
Found at i:19612022 original size:15 final size:15
Alignment explanation
Indices: 19611999--19612028 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
19611989 CTCCTACAAG
19611999 TGACAATGAAGAAGA
1 TGACAATGAAGAAGA
*
19612014 TGACGATGAAGAAGA
1 TGACAATGAAGAAGA
19612029 GGAAGAGGAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.30, T:0.13
Consensus pattern (15 bp):
TGACAATGAAGAAGA
Found at i:19620873 original size:751 final size:752
Alignment explanation
Indices: 19619431--19620936 Score: 2764
Period size: 751 Copynumber: 2.0 Consensus size: 752
19619421 CTGAAACTTT
* *
19619431 ATTATGATCATGCAATTTGGAGGTACGGTTTAGGTCCCCTTTCTTTGCACTTTTTATTTCGTAAT
1 ATTATGATCATGCAATTTGGAGGTACGGTTTAGGTCCCCTTCCTTTGCACTTTTTATTTCATAAT
19619496 TAATAAAATTTAACAGGGTAGCTGGGCCCTGCGTGAATTTCCAGCATAAAAAAAAATTGAAAGAG
66 TAATAAAATTTAACAGGGTAGCTGGGCCCTGCGTGAATTTCCAGCATAAAAAAAAATTGAAAGAG
* *
19619561 AATCAAGATCACAAAGCTTCAACTATTAGTTTTCTTTCTCTACTTTTTTTTTTCTTATTTTCTTG
131 AATCAAGATCACAAAGCTTCAACTATTAGTTTTCTCTCTCTACTTTTTTTTTTCTGATTTTCTTG
19619626 ACTTGGATTAATGGCTAATTTTCTTTAGATGAAGTTTATATTAGATATTATGAGCTAAACTATTT
196 ACTTGGATTAATGGCTAATTTTCTTTAGATGAAGTTTATATTAGATATTATGAGCTAAACTATTT
* *
19619691 TTCTAAAATTGTGGTGGCTTTCAACAGGTAGTTTGAATATTTGTTTCTCTTTTATTTACTATGAA
261 TTCTAAAATTGTGGTGGATTTCAACAGGTAGTTTAAATATTTGTTTCTCTTTTATTTACTATGAA
19619756 TGGATATAGTCTTGCTTATTCAAATTTGTTTTTAATGCTTTTAATTACCTGATCAATAATTAACT
326 TGGATATAGTCTTGCTTATTCAAATTTGTTTTTAATGCTTTTAATTACCTGATCAATAATTAACT
*
19619821 GATTTGTAAATCTAATTGAGACTCAATAGAGAGATTTTAGATTGTACTACGATTTAAATAGTGTA
391 AATTTGTAAATCTAATTGAGACTCAATAGAGAGATTTTAGATTGTACTACGATTTAAATAGTGTA
*
19619886 TGTTCACATCACTTAGGTGATCTGATTCATGATTCGAGTAGACATATGCCAATCGCCATACATAG
456 TGTTCACATCACTTAGGTGATCTGATTCATGATTCGAGTAGACATATGCCAATCGACATACATAG
19619951 CCAAATTAGAACACTAGCTTAATGAACCTTATTTAATTAATTACTATAGACATACAGTGACCCAA
521 CCAAATTAGAACACTAGCTTAATGAACCTTATTTAATTAATTACTATAGACATACAGTGACCCAA
*
19620016 CTAAGTTAGGTATTTGTGCAAGCATTTCGATGGAGACTTGTATATAGCTTTGGGTTCTAGGTTAG
586 CTAAGTTAGGTATTTGTGCAAGCATCTCGATGGAGACTTGTATATAGCTTTGGGTTCTAGGTTAG
*
19620081 TAAAACCACTCATGAATGTAAATAATAAGAAAAATTGATATAAGATGAAGTGCTGAGTGAACTCA
651 TAAAACCACTCATGAATGTAAATAATAAGAAAAATTGATATAAGATGAAGTGCTGAGTGAACCCA
*
19620146 TAATCCTAGGTTTTAATATATTGCCTTTCTCAAGTGA
716 TAATCCTAGGTTTTAATATATTGCCTTTCTCAAATGA
*
19620183 ATTATGATCATGCAATTTGGAGGTACGGTTTAGGTCCCCTTCCTTTGTACTTTTTATTTCATAAT
1 ATTATGATCATGCAATTTGGAGGTACGGTTTAGGTCCCCTTCCTTTGCACTTTTTATTTCATAAT
* *
19620248 TAATAAAATTTAACAGGGTAGCTGGGCCCTGCGTGAATTTCCAGCATTAAAAAAAATTGAAGGAG
66 TAATAAAATTTAACAGGGTAGCTGGGCCCTGCGTGAATTTCCAGCATAAAAAAAAATTGAAAGAG
19620313 AATCAAGATCACAAAGCTTCAACTATTAGTTTTCTCTCTCTAC-TTTTTTTTTCTGATTTTCTTG
131 AATCAAGATCACAAAGCTTCAACTATTAGTTTTCTCTCTCTACTTTTTTTTTTCTGATTTTCTTG
19620377 ACTTGGATTAATGGCTAATTTTCTTTAGATGAAGTTTATATTAGATATTATGAGCTAAACTATTT
196 ACTTGGATTAATGGCTAATTTTCTTTAGATGAAGTTTATATTAGATATTATGAGCTAAACTATTT
**
19620442 TTCTAGGATTGTGGTGGATTTCAACAGGTAGTTTAAATATTTGTTTCTCTTTTATTTACTATGAA
261 TTCTAAAATTGTGGTGGATTTCAACAGGTAGTTTAAATATTTGTTTCTCTTTTATTTACTATGAA
19620507 TGGATATAGTCTTGCTTATTCAAATTTGTTTTTAATGCTTTTAATTACCTGATCAATAATTAACT
326 TGGATATAGTCTTGCTTATTCAAATTTGTTTTTAATGCTTTTAATTACCTGATCAATAATTAACT
* * *
19620572 AATTTGTAAATCTAATTGAGACTCAATAGAGAGATTTTAGATTGTATTGCGATTTGAATAGTGTA
391 AATTTGTAAATCTAATTGAGACTCAATAGAGAGATTTTAGATTGTACTACGATTTAAATAGTGTA
* ** *
19620637 TGTTCATATCACTTAGGTGATCTGATTTGTGATTCGAGTAGACATATGCCAATTGACATACATAG
456 TGTTCACATCACTTAGGTGATCTGATTCATGATTCGAGTAGACATATGCCAATCGACATACATAG
19620702 CCAAATTAGAACACTAGCTTAATGAACCTTATTTAATTAATTACTATAGACATACAGTGACCCAA
521 CCAAATTAGAACACTAGCTTAATGAACCTTATTTAATTAATTACTATAGACATACAGTGACCCAA
*
19620767 CTAAGTTAGGTATTTGTGCAAGCATCTCGATGGAGACTTGTGTATAGCTTTGGGTTCTAGGTTAG
586 CTAAGTTAGGTATTTGTGCAAGCATCTCGATGGAGACTTGTATATAGCTTTGGGTTCTAGGTTAG
19620832 TAAAACCAGC-CATGAATGTAAATAATAAGAAAAATTGATATAAGATGAAGTGCTGAGTGAACCC
651 TAAAACCA-CTCATGAATGTAAATAATAAGAAAAATTGATATAAGATGAAGTGCTGAGTGAACCC
*
19620896 ATAATCCTATGTTTTAATATATTGCCTTTCTCAAATGA
715 ATAATCCTAGGTTTTAATATATTGCCTTTCTCAAATGA
19620934 ATT
1 ATT
19620937 CTTAGCTTTT
Statistics
Matches: 728, Mismatches: 25, Indels: 3
0.96 0.03 0.00
Matches are distributed among these distances:
751 560 0.77
752 168 0.23
ACGTcount: A:0.31, C:0.14, G:0.16, T:0.39
Consensus pattern (752 bp):
ATTATGATCATGCAATTTGGAGGTACGGTTTAGGTCCCCTTCCTTTGCACTTTTTATTTCATAAT
TAATAAAATTTAACAGGGTAGCTGGGCCCTGCGTGAATTTCCAGCATAAAAAAAAATTGAAAGAG
AATCAAGATCACAAAGCTTCAACTATTAGTTTTCTCTCTCTACTTTTTTTTTTCTGATTTTCTTG
ACTTGGATTAATGGCTAATTTTCTTTAGATGAAGTTTATATTAGATATTATGAGCTAAACTATTT
TTCTAAAATTGTGGTGGATTTCAACAGGTAGTTTAAATATTTGTTTCTCTTTTATTTACTATGAA
TGGATATAGTCTTGCTTATTCAAATTTGTTTTTAATGCTTTTAATTACCTGATCAATAATTAACT
AATTTGTAAATCTAATTGAGACTCAATAGAGAGATTTTAGATTGTACTACGATTTAAATAGTGTA
TGTTCACATCACTTAGGTGATCTGATTCATGATTCGAGTAGACATATGCCAATCGACATACATAG
CCAAATTAGAACACTAGCTTAATGAACCTTATTTAATTAATTACTATAGACATACAGTGACCCAA
CTAAGTTAGGTATTTGTGCAAGCATCTCGATGGAGACTTGTATATAGCTTTGGGTTCTAGGTTAG
TAAAACCACTCATGAATGTAAATAATAAGAAAAATTGATATAAGATGAAGTGCTGAGTGAACCCA
TAATCCTAGGTTTTAATATATTGCCTTTCTCAAATGA
Found at i:19632706 original size:615 final size:617
Alignment explanation
Indices: 19631521--19632755 Score: 1861
Period size: 615 Copynumber: 2.0 Consensus size: 617
19631511 TAGATTTATT
* * *
19631521 TTATGCAAATAATAAATACTATACATGCAAAGATGAGACTTTAATAAAAACAAATAACTAAATCC
1 TTATGAAAAAAATAAATACAATACATGCAAAGATGAGACTTTAATAAAAACAAATAACTAAATCC
* * * * *
19631586 TTCGGTAAATATTGAGTCACATGCCATGCATGATTAAGTTTCCTTCCACTATATAGCAAAATAAC
66 CTCAGTAAATATTGAGTCACATGCCATGCATGATTAAATTGCCTTCCACCATATAGCAAAATAAC
* * * *
19631651 CTGGCTACTCTTTTAATTAGAGACTTGTTGAGCACACTCCAGGTCACACTTCTACATGAGTATTT
131 CTGGCTACTCTTTTAATTAGAGACTTGTTGAGCACACACAAGGTCACACTTCTACATAAGTATGT
* * *
19631716 ATTGACGATTTTGCACACATAAGTATATGTATAAAAGAAAGTAATATAGATAGTAAGTCTAGATT
196 ATTGACGATTTTGCACACACAAGTATATGTATAAAAGAAAGTAATATAGACAATAAGTCTAGATT
*
19631781 ATCATTTCCATAGGGATTCATTTCTAAAGTTTCACTAAGTACTAAAATTGTATAACAAATTTAAC
261 ATCATTTCCATAGGGATTCATTTCTAAAGTTTCACTAAGTACTAAAATTATATAACAAATTTAAC
*
19631846 TTATTTAAGCAAACTAAAAATTTAAAAGCTAATCAAAATCGAAATTAAAATAAACACTAAATTAA
326 TTATTTAAGCAAACTAAAAATTTAAAAGCTAATCAAAATCAAAATTAAAATAAACACTAAATTAA
* * * *
19631911 CCTGCAAAAAATAAATATGTTGAGAAAAGCAGTTGATTAAAGACCTAAGATTATGGGTTTATTCA
391 CCTGCAAAAAATAAATATGTTGAGAAAAGCAGTAGATTAAAGAACTAAGATTATGGGCTCATTCA
* ** * *
19631976 ACACTTCATCTGATACTAGTTTTTCTTGTTGTTTATCTTTCTTGGGGGTTATTACTAACCTAGAA
456 ACACTTCATCTGATACCAACTTTTCTTGTTATTTATCTTTCTTGGGGGATATTACTAACCTAGAA
* *
19632041 TCCAAAGCTATGGACAAGTCTTCGTAAAGATGCTTGCACAAATGCCTAACTTAATTAGTTCACTA
521 TCCAAAGCTATGGACAAGTCTCCGTAAAGATGCTTGCACAAATACCTAACTTAATTAGTTCACTA
*
19632106 TATGCCTATAGGAATCAATTAAATTAAGTTCA
586 TATGCCTATAAGAATCAATTAAATTAAGTTCA
* *
19632138 TTATGAAAAAAATAAATACAATACATGCAAAGGTGAGACTTTAATAAAGACAAATAACTAAATCC
1 TTATGAAAAAAATAAATACAATACATGCAAAGATGAGACTTTAATAAAAACAAATAACTAAATCC
*
19632203 CTCAGTAAATATTGAGTCACATGCCATGCATGATTAAATTGCCTTCCACCATATAGCAAGATAAC
66 CTCAGTAAATATTGAGTCACATGCCATGCATGATTAAATTGCCTTCCACCATATAGCAAAATAAC
* * * * *
19632268 TTGGCTACTCTTTTATTTGGAGACTTGTTGAGCACACACAATGTCACACTTTTACATAAGTATGT
131 CTGGCTACTCTTTTAATTAGAGACTTGTTGAGCACACACAAGGTCACACTTCTACATAAGTATGT
** * * *
19632333 ATTGTTGATTTTGCACACGCAAGTATATGTATCAGA-AAAGTAATATAGACAATAAGTCTAGATT
196 ATTGACGATTTTGCACACACAAGTATATGTATAAAAGAAAGTAATATAGACAATAAGTCTAGATT
* *
19632397 ATCAGTTT-CATAGTGATTTATTTCTAAAGTTTCACTAAGTACTAAAATTATATAACAAA-TTAA
261 ATCA-TTTCCATAGGGATTCATTTCTAAAGTTTCACTAAGTACTAAAATTATATAACAAATTTAA
** *
19632460 TCTTATTTAAGCAAA-TCGAAATTTAAAAGCTAATCAAACTCAAAATTAAAATAAACACTAAATT
325 -CTTATTTAAGCAAACTAAAAATTTAAAAGCTAATCAAAATCAAAATTAAAATAAACACTAAATT
* * * * *
19632524 -AGCTAGTAGAAATTAAATATGTTGAGAAAAGCAGTAGATTAAAGAACTAGGATTATGGGCTCAT
389 AACCT-GCAAAAAATAAATATGTTGAGAAAAGCAGTAGATTAAAGAACTAAGATTATGGGCTCAT
* *
19632588 TCAACAGTTCATCCT-ATACCAACTTTTCTTGTTATTTATCTTTCTTGGGTGATATTACTAACCT
453 TCAACACTTCAT-CTGATACCAACTTTTCTTGTTATTTATCTTTCTTGGGGGATATTACTAACCT
** * *
19632652 AGAATCTGAGGCTATGGACAAGTCTCCGTCAAGATGCTTGCACAAATACCTAACTTAATTAGTTC
517 AGAATCCAAAGCTATGGACAAGTCTCCGTAAAGATGCTTGCACAAATACCTAACTTAATTAGTTC
*
19632717 ACTATATGTCTATAAGAATCAATTAAATTAAGTTCA
582 ACTATATGCCTATAAGAATCAATTAAATTAAGTTCA
19632753 TTA
1 TTA
19632756 AGCAAGTGTC
Statistics
Matches: 555, Mismatches: 59, Indels: 10
0.89 0.09 0.02
Matches are distributed among these distances:
614 3 0.01
615 250 0.45
616 94 0.17
617 208 0.37
ACGTcount: A:0.39, C:0.15, G:0.13, T:0.33
Consensus pattern (617 bp):
TTATGAAAAAAATAAATACAATACATGCAAAGATGAGACTTTAATAAAAACAAATAACTAAATCC
CTCAGTAAATATTGAGTCACATGCCATGCATGATTAAATTGCCTTCCACCATATAGCAAAATAAC
CTGGCTACTCTTTTAATTAGAGACTTGTTGAGCACACACAAGGTCACACTTCTACATAAGTATGT
ATTGACGATTTTGCACACACAAGTATATGTATAAAAGAAAGTAATATAGACAATAAGTCTAGATT
ATCATTTCCATAGGGATTCATTTCTAAAGTTTCACTAAGTACTAAAATTATATAACAAATTTAAC
TTATTTAAGCAAACTAAAAATTTAAAAGCTAATCAAAATCAAAATTAAAATAAACACTAAATTAA
CCTGCAAAAAATAAATATGTTGAGAAAAGCAGTAGATTAAAGAACTAAGATTATGGGCTCATTCA
ACACTTCATCTGATACCAACTTTTCTTGTTATTTATCTTTCTTGGGGGATATTACTAACCTAGAA
TCCAAAGCTATGGACAAGTCTCCGTAAAGATGCTTGCACAAATACCTAACTTAATTAGTTCACTA
TATGCCTATAAGAATCAATTAAATTAAGTTCA
Found at i:19637075 original size:17 final size:17
Alignment explanation
Indices: 19637045--19637077 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
19637035 TTCTTGATAA
19637045 AATAAAACTCCTTATTG
1 AATAAAACTCCTTATTG
19637062 AATAATAACT-CTTATT
1 AATAA-AACTCCTTATT
19637078 TTATTATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.39
Consensus pattern (17 bp):
AATAAAACTCCTTATTG
Found at i:19637283 original size:29 final size:28
Alignment explanation
Indices: 19637251--19637394 Score: 171
Period size: 29 Copynumber: 5.0 Consensus size: 28
19637241 AAATATTTGA
* * *
19637251 TCTTGTCTAAATTTGAGACAAATATGTAT
1 TCTTGTCTAAA-TTAAGACAAACATGTTT
* * *
19637280 TCTTGTCTACATTAAGACAAAAAATATTTT
1 TCTTGTCTAAATTAAGAC-AAACAT-GTTT
*
19637310 TCTTGTCTTAAATTAAGACAAACATATTT
1 TCTTGTC-TAAATTAAGACAAACATGTTT
19637339 TCTTGTCTAAATTAAGACCAAACATGTTT
1 TCTTGTCTAAATTAAGA-CAAACATGTTT
*
19637368 TCTTGTCTAAATTAAGACAAGCATGTT
1 TCTTGTCTAAATTAAGACAAACATGTT
19637395 AAAGCTGCCA
Statistics
Matches: 101, Mismatches: 10, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
28 25 0.25
29 52 0.51
30 14 0.14
31 10 0.10
ACGTcount: A:0.36, C:0.14, G:0.10, T:0.40
Consensus pattern (28 bp):
TCTTGTCTAAATTAAGACAAACATGTTT
Found at i:19637331 original size:59 final size:58
Alignment explanation
Indices: 19637229--19637387 Score: 203
Period size: 59 Copynumber: 2.7 Consensus size: 58
19637219 TCTTATCCAT
* * * *
19637229 AATTAAGACAAAAAATATTTGATCTTGTCTAAATTTGAGACAAATATGTATTCTTGTCTA
1 AATTAAGACAAAAAATATTT-TTCTTGTCTAAA-TTAAGACAAACATATATTCTTGTCTA
* *
19637289 CATTAAGACAAAAAATATTTTTCTTGTCTTAAATTAAGACAAACATATTTTCTTGTCTA
1 AATTAAGACAAAAAATATTTTTCTTGTC-TAAATTAAGACAAACATATATTCTTGTCTA
* * *
19637348 AATTAAGACCAAACAT-GTTTTCTTGTCTAAATTAAGACAA
1 AATTAAGACAAAAAATATTTTTCTTGTCTAAATTAAGACAA
19637388 GCATGTTAAA
Statistics
Matches: 88, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
57 13 0.15
58 10 0.11
59 42 0.48
60 23 0.26
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (58 bp):
AATTAAGACAAAAAATATTTTTCTTGTCTAAATTAAGACAAACATATATTCTTGTCTA
Found at i:19648244 original size:8 final size:8
Alignment explanation
Indices: 19648231--19648255 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
19648221 ATGGGCTGTT
19648231 GCCCAAGA
1 GCCCAAGA
19648239 GCCCAAGA
1 GCCCAAGA
19648247 GCCCAAGA
1 GCCCAAGA
19648255 G
1 G
19648256 TAGGCTGCTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.36, C:0.36, G:0.28, T:0.00
Consensus pattern (8 bp):
GCCCAAGA
Found at i:19649529 original size:17 final size:17
Alignment explanation
Indices: 19649499--19649531 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
19649489 TTCTTGATAA
19649499 AATAAAACTCCTTATTG
1 AATAAAACTCCTTATTG
19649516 AATAATAACT-CTTATT
1 AATAA-AACTCCTTATT
19649532 TCATTATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.39
Consensus pattern (17 bp):
AATAAAACTCCTTATTG
Found at i:19649737 original size:29 final size:28
Alignment explanation
Indices: 19649695--19649873 Score: 195
Period size: 28 Copynumber: 6.3 Consensus size: 28
19649685 TTAAGACAAA
*
19649695 AAATAT-TTGTTCTTGTCTAAATTTGAGAC
1 AAATATGTT-TTCTTGTCTAAA-TTAAGAC
* *
19649724 AAATATGTATTCTTGTCTAGATTAAGACC
1 AAATATGTTTTCTTGTCTAAATTAAGA-C
19649753 AAAATAT-TTTTC--GTCTTAAATTAAGAC
1 -AAATATGTTTTCTTGTC-TAAATTAAGAC
*
19649780 AAATATATTTTCTTGTCTAAATTAAGAC
1 AAATATGTTTTCTTGTCTAAATTAAGAC
* * *
19649808 AAACATATTTTCCTGTCTAAATTAAGACC
1 AAATATGTTTTCTTGTCTAAATTAAGA-C
*
19649837 AAACATGTTTTCTTGTCTAAATTAAGAC
1 AAATATGTTTTCTTGTCTAAATTAAGAC
*
19649865 AAACATGTT
1 AAATATGTT
19649874 AAAGCTGCCA
Statistics
Matches: 133, Mismatches: 9, Indels: 17
0.84 0.06 0.11
Matches are distributed among these distances:
26 6 0.05
27 9 0.07
28 60 0.45
29 51 0.38
30 7 0.05
ACGTcount: A:0.37, C:0.13, G:0.10, T:0.40
Consensus pattern (28 bp):
AAATATGTTTTCTTGTCTAAATTAAGAC
Found at i:19649793 original size:56 final size:56
Alignment explanation
Indices: 19649683--19649864 Score: 224
Period size: 56 Copynumber: 3.2 Consensus size: 56
19649673 TCTTGTCCGT
* * *
19649683 AATTAAGACAAAAAATATTTGTTCTTGTCTAAATTTGAGACAAATATGTATTCTTGTCTA
1 AATTAAGAC-CAAAATATTT-TTC-TGTCTAAA-TTAAGACAAATATGTTTTCTTGTCTA
* *
19649743 GATTAAGACCAAAATATTTTTC-GTCTTAAATTAAGACAAATATATTTTCTTGTCTA
1 AATTAAGACCAAAATATTTTTCTGTC-TAAATTAAGACAAATATGTTTTCTTGTCTA
* *
19649799 AATTAAGA-CAAACATATTTTCCTGTCTAAATTAAGACCAAACATGTTTTCTTGTCTA
1 AATTAAGACCAAA-ATATTTTTCTGTCTAAATTAAGA-CAAATATGTTTTCTTGTCTA
19649856 AATTAAGAC
1 AATTAAGAC
19649865 AAACATGTTA
Statistics
Matches: 108, Mismatches: 9, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
55 4 0.04
56 51 0.47
57 33 0.31
58 3 0.03
59 9 0.08
60 8 0.07
ACGTcount: A:0.38, C:0.13, G:0.10, T:0.38
Consensus pattern (56 bp):
AATTAAGACCAAAATATTTTTCTGTCTAAATTAAGACAAATATGTTTTCTTGTCTA
Found at i:19650007 original size:46 final size:46
Alignment explanation
Indices: 19649940--19650033 Score: 179
Period size: 46 Copynumber: 2.0 Consensus size: 46
19649930 CTTAAACAAG
19649940 TTGAATTCTACAAAGCTAAGTGGGGAATCTATTTGGGCATAAATAT
1 TTGAATTCTACAAAGCTAAGTGGGGAATCTATTTGGGCATAAATAT
*
19649986 TTGAATTCTACAAAGCTAAGTGGGGAATCTATTTGGGCATAGATAT
1 TTGAATTCTACAAAGCTAAGTGGGGAATCTATTTGGGCATAAATAT
19650032 TT
1 TT
19650034 CAAGCTCCAA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.33, C:0.11, G:0.22, T:0.34
Consensus pattern (46 bp):
TTGAATTCTACAAAGCTAAGTGGGGAATCTATTTGGGCATAAATAT
Found at i:19650951 original size:101 final size:100
Alignment explanation
Indices: 19650776--19650959 Score: 359
Period size: 101 Copynumber: 1.8 Consensus size: 100
19650766 ACACTACACC
19650776 CTTAACACAATAAAGTGACCAACTTTATTATATGGCTGTGAATAATTTTTAGATTCAATCAAAAT
1 CTTAACACAATAAAGTGACCAACTTTATTATATGGCTGTGAATAATTTTTAGATTCAATCAAAAT
19650841 ACATGTCTCCTATGTATGACTCCCTATACANCCGAT
66 ACATGTCTCCTATGTATGACTCCCTATACA-CCGAT
19650877 CTTAACACAATAAAGTGACCAACTTTATTATATGGCTGTGAATAATTTTTAGATTCAATCAAAAT
1 CTTAACACAATAAAGTGACCAACTTTATTATATGGCTGTGAATAATTTTTAGATTCAATCAAAAT
19650942 ACATGTCTCCTATGTATG
66 ACATGTCTCCTATGTATG
19650960 GCTCTTTATT
Statistics
Matches: 83, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
101 83 1.00
ACGTcount: A:0.35, C:0.18, G:0.11, T:0.35
Consensus pattern (100 bp):
CTTAACACAATAAAGTGACCAACTTTATTATATGGCTGTGAATAATTTTTAGATTCAATCAAAAT
ACATGTCTCCTATGTATGACTCCCTATACACCGAT
Found at i:19659121 original size:15 final size:15
Alignment explanation
Indices: 19659101--19659132 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
19659091 GCTTAAAATG
*
19659101 ATTTCTCAACTTGAA
1 ATTTCTCAACTTAAA
19659116 ATTTCTCAACTTAAA
1 ATTTCTCAACTTAAA
19659131 AT
1 AT
19659133 GATGCTAGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.38, C:0.19, G:0.03, T:0.41
Consensus pattern (15 bp):
ATTTCTCAACTTAAA
Found at i:19661896 original size:25 final size:25
Alignment explanation
Indices: 19661862--19661915 Score: 83
Period size: 25 Copynumber: 2.2 Consensus size: 25
19661852 CTTTTTAAAC
*
19661862 TAATGTTTATTTATT-CTATAAAGAT
1 TAATGCTTATTTATTGC-ATAAAGAT
19661887 TAATGCTTATTTATTGCATAAAGAT
1 TAATGCTTATTTATTGCATAAAGAT
19661912 TAAT
1 TAAT
19661916 ATTATTAATC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 26 0.96
26 1 0.04
ACGTcount: A:0.37, C:0.06, G:0.09, T:0.48
Consensus pattern (25 bp):
TAATGCTTATTTATTGCATAAAGAT
Found at i:19663122 original size:68 final size:68
Alignment explanation
Indices: 19662927--19663177 Score: 238
Period size: 68 Copynumber: 3.7 Consensus size: 68
19662917 CATGTTTGGT
* * * * * * ** *
19662927 ATGATGAATGCCATAAGATTATGCATATGGTGTAAATTCCATATACCGTATGAGATGATTAAGTG
1 ATGATGAATTCCATGAGATTATGTATATGATGTATATTCCATATATCACATGAGATGATTAAGTA
19662992 TGC
66 TGC
* * * * *
19662995 ATGATGTATACTATAAGATTATGTATATGATGT-TAATTCCATATATCATATGA-AGTGATTAAG
1 ATGATGAATTCCATGAGATTATGTATATGATGTAT-ATTCCATATATCACATGAGA-TGATTAAG
19663058 TATGC
64 TATGC
* * * * * * *
19663063 ATTATAAATTCCATGAGATAATGTATATGATGTATATTCCATATCTTACATGAGATGATTGAGAA
1 ATGATGAATTCCATGAGATTATGTATATGATGTATATTCCATATATCACATGAGATGATTAAGTA
*
19663128 AGC
66 TGC
* *
19663131 ATGATGAGTGT-CATGAGATTATGTATATGATGTATTTTCCATATATC
1 ATGATGAAT-TCCATGAGATTATGTATATGATGTATATTCCATATATC
19663178 TTATTAGATG
Statistics
Matches: 149, Mismatches: 29, Indels: 10
0.79 0.15 0.05
Matches are distributed among these distances:
67 1 0.01
68 145 0.97
69 3 0.02
ACGTcount: A:0.35, C:0.10, G:0.18, T:0.37
Consensus pattern (68 bp):
ATGATGAATTCCATGAGATTATGTATATGATGTATATTCCATATATCACATGAGATGATTAAGTA
TGC
Found at i:19682219 original size:11 final size:11
Alignment explanation
Indices: 19682203--19682229 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
19682193 GATAAGTAAC
19682203 AATATTTTAAA
1 AATATTTTAAA
19682214 AATATTTTAAA
1 AATATTTTAAA
19682225 AATAT
1 AATAT
19682230 AGAAAATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (11 bp):
AATATTTTAAA
Found at i:19682972 original size:20 final size:20
Alignment explanation
Indices: 19682947--19682987 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 20
19682937 GCTATAAATA
19682947 TCATTT-TTCCAACAACTTCT
1 TCATTTCTT-CAACAACTTCT
19682967 TCATTTCTTCAACAACTTCT
1 TCATTTCTTCAACAACTTCT
19682987 T
1 T
19682988 ATTCTTCTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 18 0.90
21 2 0.10
ACGTcount: A:0.24, C:0.29, G:0.00, T:0.46
Consensus pattern (20 bp):
TCATTTCTTCAACAACTTCT
Found at i:19683439 original size:2 final size:2
Alignment explanation
Indices: 19683432--19683531 Score: 148
Period size: 2 Copynumber: 50.0 Consensus size: 2
19683422 TGTTATGTTG
19683432 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * * *
19683473 AT NT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT CT AA
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
19683515 AT AT AT AT GAT AT AT AT
1 AT AT AT AT -AT AT AT AT
19683532 TGTTTGTAAT
Statistics
Matches: 89, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
1 1 0.01
2 86 0.97
3 2 0.02
ACGTcount: A:0.48, C:0.01, G:0.02, T:0.48
Consensus pattern (2 bp):
AT
Found at i:19688697 original size:2 final size:2
Alignment explanation
Indices: 19688690--19688726 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
19688680 AACACTTTAC
19688690 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
19688727 NNNNNNNNNN
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:19688860 original size:2 final size:2
Alignment explanation
Indices: 19688853--19688896 Score: 72
Period size: 2 Copynumber: 22.5 Consensus size: 2
19688843 CTTAACTTAC
*
19688853 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TC TA TA T- TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
19688894 TA T
1 TA T
19688897 GCAAACAACT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 38 0.97
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:19694313 original size:12 final size:12
Alignment explanation
Indices: 19694296--19694321 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
19694286 GGAAGTTGAA
19694296 TCTTTCAACCGT
1 TCTTTCAACCGT
19694308 TCTTTCAACCGT
1 TCTTTCAACCGT
19694320 TC
1 TC
19694322 CCTCATACTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.35, G:0.08, T:0.42
Consensus pattern (12 bp):
TCTTTCAACCGT
Found at i:19696347 original size:21 final size:22
Alignment explanation
Indices: 19696322--19696362 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
19696312 CTTAGGTGGA
*
19696322 AAAATTCAAGGGAA-AAGTGTG
1 AAAATTCAAGGAAACAAGTGTG
19696343 AAAATTCAAGGAAACAAGTG
1 AAAATTCAAGGAAACAAGTG
19696363 AAAAAAGGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.51, C:0.07, G:0.24, T:0.17
Consensus pattern (22 bp):
AAAATTCAAGGAAACAAGTGTG
Found at i:19696363 original size:20 final size:21
Alignment explanation
Indices: 19696322--19696366 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
19696312 CTTAGGTGGA
*
19696322 AAAATTCAAGGGAAAAGTGTG
1 AAAATTCAAGGGAAAAGAGTG
19696343 AAAATTCAA-GGAAACA-AGTG
1 AAAATTCAAGGGAAA-AGAGTG
19696363 AAAA
1 AAAA
19696367 AAGGTAAGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 12 0.55
21 10 0.45
ACGTcount: A:0.56, C:0.07, G:0.22, T:0.16
Consensus pattern (21 bp):
AAAATTCAAGGGAAAAGAGTG
Found at i:19696367 original size:21 final size:20
Alignment explanation
Indices: 19696320--19696367 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 20
19696310 ACCTTAGGTG
*
19696320 GAAAAATTCAAGGGAAAAGT
1 GAAAAATTCAAGGAAAAAGT
*
19696340 GTGAAAATTCAAGGAAACAAGT
1 G-AAAAATTCAAGGAAA-AAGT
19696362 GAAAAA
1 GAAAAA
19696368 AGGTAAGATT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 17 0.74
22 5 0.22
ACGTcount: A:0.56, C:0.06, G:0.23, T:0.15
Consensus pattern (20 bp):
GAAAAATTCAAGGAAAAAGT
Found at i:19699587 original size:107 final size:106
Alignment explanation
Indices: 19699394--19699622 Score: 273
Period size: 107 Copynumber: 2.2 Consensus size: 106
19699384 ATTAAGTTGT
* * * * *
19699394 GCCTAATTAATTAAA-TTGTTTAATTAAATCATTAGGCCTAATTAATTAAATTGTTTAATTCAGT
1 GCCTAATTGATTAAATTTGTTGAATTAAATCATTAGGCATAATTAATTAAATTGTTTAATTAAAT
* *
19699458 CATTGGGCCTAATTAATTAAATTAAACAATTAAGTTATTGG
66 CACTGAGCCTAATTAATTAAATTAAACAATTAAGTTATTGG
* * *
19699499 GCCTAATTGATTAAATTTGTTGAATTAAGTCATTGGGCATAATTGATTAAAATTGTTTAATTAAA
1 GCCTAATTGATTAAATTTGTTGAATTAAATCATTAGGCATAATTAATT-AAATTGTTTAATTAAA
* ****
19699564 T-AGCTGAGCTTAATTAATTAAATTGTTTAATTAAGTTATTGG
65 TCA-CTGAGCCTAATTAATTAAATTAAACAATTAAGTTATTGG
* *
19699606 GCCTAATCGATCAAATT
1 GCCTAATTGATTAAATT
19699623 AAACAATTAA
Statistics
Matches: 104, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
105 14 0.13
106 28 0.27
107 62 0.60
ACGTcount: A:0.37, C:0.09, G:0.14, T:0.41
Consensus pattern (106 bp):
GCCTAATTGATTAAATTTGTTGAATTAAATCATTAGGCATAATTAATTAAATTGTTTAATTAAAT
CACTGAGCCTAATTAATTAAATTAAACAATTAAGTTATTGG
Found at i:19699605 original size:142 final size:139
Alignment explanation
Indices: 19699367--19699643 Score: 371
Period size: 142 Copynumber: 2.0 Consensus size: 139
19699357 TCTCAAGCAC
* * * *
19699367 TTGATTAAAATTGTTTAATTAAGTTGTGCCTAATTAATTAAATTGTTTAATTAAATCATTAGGCC
1 TTGATTAAAATTGTTGAATTAAGTTGGGCATAATTAATTAAATTGTTTAATTAAATCATGAGGCC
* * *
19699432 TAATTAATTAAATTGTTTAATTCAGTCATTGGGCCTAATTAATTAAATTAAACAATTAAGTT-AT
66 TAATTAATTAAATTGTTTAATTAAGTCATTGGGCCTAATCAATCAAATTAAACAATTAAGTTAAT
19699496 TGGGCCTAA
131 TGGGCCTAA
* *
19699505 TTGATTAAATTTGTTGAATTAAGTCATTGGGCATAATTGATTAAAATTGTTTAATTAAAT-AGCT
1 TTGATTAAAATTGTTGAATTAAG---TTGGGCATAATTAATT-AAATTGTTTAATTAAATCA--T
* * *
19699569 GA-GCTTAATTAATTAAATTGTTTAATTAAGTTATTGGGCCTAATCGATCAAATTAAACAATTAA
60 GAGGCCTAATTAATTAAATTGTTTAATTAAGTCATTGGGCCTAATCAATCAAATTAAACAATTAA
19699633 GTTAATTGGGC
125 GTTAATTGGGC
19699644 TTCTTAAGGA
Statistics
Matches: 120, Mismatches: 12, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
138 21 0.17
141 14 0.12
142 76 0.63
143 9 0.08
ACGTcount: A:0.37, C:0.08, G:0.14, T:0.41
Consensus pattern (139 bp):
TTGATTAAAATTGTTGAATTAAGTTGGGCATAATTAATTAAATTGTTTAATTAAATCATGAGGCC
TAATTAATTAAATTGTTTAATTAAGTCATTGGGCCTAATCAATCAAATTAAACAATTAAGTTAAT
TGGGCCTAA
Found at i:19699622 original size:35 final size:35
Alignment explanation
Indices: 19699374--19699612 Score: 261
Period size: 35 Copynumber: 6.9 Consensus size: 35
19699364 CACTTGATTA
*
19699374 AAATTGTTTAATTAAG---TTGTGCCTAATTAATT
1 AAATTGTTTAATTAAGTCATTGGGCCTAATTAATT
* *
19699406 AAATTGTTTAATTAAATCATTAGGCCTAATTAATT
1 AAATTGTTTAATTAAGTCATTGGGCCTAATTAATT
*
19699441 AAATTGTTTAATTCAGTCATTGGGCCTAATTAATT
1 AAATTGTTTAATTAAGTCATTGGGCCTAATTAATT
**** * *
19699476 AAATTAAACAATTAAGTTATTGGGCCTAATTGATT
1 AAATTGTTTAATTAAGTCATTGGGCCTAATTAATT
* * *
19699511 AAATTTGTTGAATTAAGTCATTGGGCATAATTGATT
1 AAA-TTGTTTAATTAAGTCATTGGGCCTAATTAATT
* * * *
19699547 AAAATTGTTTAATTAAAT-AGCTGAGCTTAATTAATT
1 -AAATTGTTTAATTAAGTCA-TTGGGCCTAATTAATT
*
19699583 AAATTGTTTAATTAAGTTATTGGGCCTAAT
1 AAATTGTTTAATTAAGTCATTGGGCCTAAT
19699613 CGATCAAATT
Statistics
Matches: 171, Mismatches: 29, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
32 15 0.09
35 102 0.60
36 51 0.30
37 3 0.02
ACGTcount: A:0.36, C:0.08, G:0.14, T:0.42
Consensus pattern (35 bp):
AAATTGTTTAATTAAGTCATTGGGCCTAATTAATT
Found at i:19705977 original size:35 final size:35
Alignment explanation
Indices: 19705911--19706159 Score: 281
Period size: 35 Copynumber: 7.1 Consensus size: 35
19705901 CACTTGATTA
*
19705911 AAATTGTTTAATTAAG---TTGTGCCTAATTAATT
1 AAATTGTTTAATTAAGTCATTGGGCCTAATTAATT
* *
19705943 AAATTGTTTAATTAAATCATTAGGCCTAATTAATT
1 AAATTGTTTAATTAAGTCATTGGGCCTAATTAATT
*
19705978 AAATTATTTAATTAAGTCATTGGGCCTAATTAATT
1 AAATTGTTTAATTAAGTCATTGGGCCTAATTAATT
**** * * *
19706013 AAATTAAACAATTAAGTTATTGGGCTTAATTGATT
1 AAATTGTTTAATTAAGTCATTGGGCCTAATTAATT
* *
19706048 AAATTTGTTTAATTAAGTCATTAGGCCTAATTGATT
1 AAA-TTGTTTAATTAAGTCATTGGGCCTAATTAATT
* *
19706084 AAAATTGTTTAATTAAAT-AGTTGGGCTTAATTAATT
1 -AAATTGTTTAATTAAGTCA-TTGGGCCTAATTAATT
* * *
19706120 AAATTGTTTAATTAAGTTATTGGGCCTAATTGATC
1 AAATTGTTTAATTAAGTCATTGGGCCTAATTAATT
19706155 AAATT
1 AAATT
19706160 AAACAATTAA
Statistics
Matches: 183, Mismatches: 27, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
32 15 0.08
35 113 0.62
36 52 0.28
37 3 0.02
ACGTcount: A:0.37, C:0.07, G:0.13, T:0.43
Consensus pattern (35 bp):
AAATTGTTTAATTAAGTCATTGGGCCTAATTAATT
Found at i:19706123 original size:107 final size:106
Alignment explanation
Indices: 19705931--19706159 Score: 318
Period size: 107 Copynumber: 2.2 Consensus size: 106
19705921 ATTAAGTTGT
* *
19705931 GCCTAATTAATTAAA-TTGTTTAATTAAATCATTAGGCCTAATTAATTAAATTATTTAATTAAGT
1 GCCTAATTGATTAAATTTGTTTAATTAAATCATTAGGCCTAATTAATTAAATTATTTAATTAAAT
19705995 CATTGGGCCTAATTAATTAAATTAAACAATTAAGTTATTGG
66 CATTGGGCCTAATTAATTAAATTAAACAATTAAGTTATTGG
* * * *
19706036 GCTTAATTGATTAAATTTGTTTAATTAAGTCATTAGGCCTAATTGATTAAAATTGTTTAATTAAA
1 GCCTAATTGATTAAATTTGTTTAATTAAATCATTAGGCCTAATTAATT-AAATTATTTAATTAAA
* ****
19706101 T-AGTTGGGCTTAATTAATTAAATTGTTTAATTAAGTTATTGG
65 TCA-TTGGGCCTAATTAATTAAATTAAACAATTAAGTTATTGG
*
19706143 GCCTAATTGATCAAATT
1 GCCTAATTGATTAAATT
19706160 AAACAATTAA
Statistics
Matches: 108, Mismatches: 13, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
105 13 0.12
106 31 0.29
107 64 0.59
ACGTcount: A:0.37, C:0.07, G:0.13, T:0.43
Consensus pattern (106 bp):
GCCTAATTGATTAAATTTGTTTAATTAAATCATTAGGCCTAATTAATTAAATTATTTAATTAAAT
CATTGGGCCTAATTAATTAAATTAAACAATTAAGTTATTGG
Found at i:19706127 original size:71 final size:69
Alignment explanation
Indices: 19705911--19706159 Score: 297
Period size: 71 Copynumber: 3.6 Consensus size: 69
19705901 CACTTGATTA
* * *
19705911 AAATTGTTTAATTAAG---TTGTGCCTAATTAATTAAATTGTTTAATTAAATCATTAGGCCTAAT
1 AAATTGTTTAATTAAGTCATTGGGCCTAATTAATTAAATTGTTTAATTAAAT-ATTGGGCTTAAT
19705973 TAATT
65 TAATT
* **** *
19705978 AAATTATTTAATTAAGTCATTGGGCCTAATTAATTAAATTAAACAATTAAGTTATTGGGCTTAAT
1 AAATTGTTTAATTAAGTCATTGGGCCTAATTAATTAAATTGTTTAATTAA-ATATTGGGCTTAAT
*
19706043 TGATT
65 TAATT
* *
19706048 AAATTTGTTTAATTAAGTCATTAGGCCTAATTGATTAAAATTGTTTAATTAAATAGTTGGGCTTA
1 AAA-TTGTTTAATTAAGTCATTGGGCCTAATTAATT-AAATTGTTTAATTAAATA-TTGGGCTTA
19706113 ATTAATT
63 ATTAATT
* * *
19706120 AAATTGTTTAATTAAGTTATTGGGCCTAATTGATCAAATT
1 AAATTGTTTAATTAAGTCATTGGGCCTAATTAATTAAATT
19706160 AAACAATTAA
Statistics
Matches: 153, Mismatches: 22, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
67 15 0.10
70 48 0.31
71 61 0.40
72 29 0.19
ACGTcount: A:0.37, C:0.07, G:0.13, T:0.43
Consensus pattern (69 bp):
AAATTGTTTAATTAAGTCATTGGGCCTAATTAATTAAATTGTTTAATTAAATATTGGGCTTAATT
AATT
Found at i:19706136 original size:142 final size:139
Alignment explanation
Indices: 19705904--19706182 Score: 402
Period size: 142 Copynumber: 2.0 Consensus size: 139
19705894 TTTCAAGCAC
19705904 TTGATTAAAATTGTTTAATTAAGTTGTGCCTAATTAATTAAATTGTTTAATTAAATCATTAGGCC
1 TTGATTAAAATTGTTTAATTAAGTTGTGCCTAATTAATTAAATTGTTTAATTAAATCATTAGGCC
*
19705969 TAATTAATTAAATTATTTAATTAAGTCATTGGGCCTAATTAATTAAATTAAACAATTAAGTT-AT
66 TAATTAATTAAATTATTTAATTAAGTCATTGGGCCTAATTAATCAAATTAAACAATTAAGTTAAT
*
19706033 TGGGCTTAA
131 TAGGCTTAA
* *
19706042 TTGATTAAATTTGTTTAATTAAGTCAT-TAGGCCTAATTGATTAAAATTGTTTAATTAAAT-AGT
1 TTGATTAAAATTGTTTAATTAAGT--TGT--GCCTAATTAATT-AAATTGTTTAATTAAATCA-T
* * * * *
19706105 TGGGCTTAATTAATTAAATTGTTTAATTAAGTTATTGGGCCTAATTGATCAAATTAAACAATTAA
60 TAGGCCTAATTAATTAAATTATTTAATTAAGTCATTGGGCCTAATTAATCAAATTAAACAATTAA
19706170 GTTAATTAGGCTT
125 GTTAATTAGGCTT
19706183 CTTAAGGACT
Statistics
Matches: 125, Mismatches: 9, Indels: 9
0.87 0.06 0.06
Matches are distributed among these distances:
138 23 0.18
139 1 0.01
140 1 0.01
141 12 0.10
142 80 0.64
143 8 0.06
ACGTcount: A:0.37, C:0.07, G:0.13, T:0.43
Consensus pattern (139 bp):
TTGATTAAAATTGTTTAATTAAGTTGTGCCTAATTAATTAAATTGTTTAATTAAATCATTAGGCC
TAATTAATTAAATTATTTAATTAAGTCATTGGGCCTAATTAATCAAATTAAACAATTAAGTTAAT
TAGGCTTAA
Found at i:19706182 original size:71 final size:71
Alignment explanation
Indices: 19705961--19706182 Score: 268
Period size: 71 Copynumber: 3.1 Consensus size: 71
19705951 TAATTAAATC
* * * *
19705961 ATTAGGCCTAATTAATTAAATTATTTAATTAAGTCATTGGGCCTAATTAATTAAATTAAACAATT
1 ATTAGGCTTAATTAATTAAATTGTTTAATTAAGTCATTGGGCCTAATTGATAAAATTAAACAATT
19706026 AAGTT-
66 AAGTTA
* * * ****
19706031 ATTGGGCTTAATTGATTAAATTTGTTTAATTAAGTCATTAGGCCTAATTGATTAAAATTGTTTAA
1 ATTAGGCTTAATTAATTAAA-TTGTTTAATTAAGTCATTGGGCCTAATTGA-TAAAATTAAACAA
*
19706096 TTAA-ATA
64 TTAAGTTA
* * * *
19706103 GTTGGGCTTAATTAATTAAATTGTTTAATTAAGTTATTGGGCCTAATTGATCAAATTAAACAATT
1 ATTAGGCTTAATTAATTAAATTGTTTAATTAAGTCATTGGGCCTAATTGATAAAATTAAACAATT
19706168 AAGTTA
66 AAGTTA
19706174 ATTAGGCTT
1 ATTAGGCTT
19706183 CTTAAGGACT
Statistics
Matches: 124, Mismatches: 24, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
70 29 0.23
71 65 0.52
72 30 0.24
ACGTcount: A:0.37, C:0.07, G:0.14, T:0.42
Consensus pattern (71 bp):
ATTAGGCTTAATTAATTAAATTGTTTAATTAAGTCATTGGGCCTAATTGATAAAATTAAACAATT
AAGTTA
Found at i:19711941 original size:38 final size:40
Alignment explanation
Indices: 19711856--19711957 Score: 118
Period size: 38 Copynumber: 2.6 Consensus size: 40
19711846 CCCGGCTCAG
* *
19711856 GTACATCCCCCCACATCATGCACATAGCCGGGGCCATCGT
1 GTACATCCCCCCACATCGTGCACATAGCCAGGGCCATCGT
* * * *
19711896 GTGCATCCCCCCGCATCGTGCACA-A-TCAGTGCCATCGT
1 GTACATCCCCCCACATCGTGCACATAGCCAGGGCCATCGT
* *
19711934 GTACATCCCTCCATATCGTGCACA
1 GTACATCCCCCCACATCGTGCACA
19711958 CGGGCACTAT
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
38 30 0.58
39 1 0.02
40 21 0.40
ACGTcount: A:0.22, C:0.39, G:0.19, T:0.21
Consensus pattern (40 bp):
GTACATCCCCCCACATCGTGCACATAGCCAGGGCCATCGT
Found at i:19712081 original size:2 final size:2
Alignment explanation
Indices: 19712070--19712098 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
19712060 AATCATCATG
19712070 CA CA -A CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
19712099 TATATATATA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:19713905 original size:16 final size:16
Alignment explanation
Indices: 19713884--19713927 Score: 54
Period size: 16 Copynumber: 2.7 Consensus size: 16
19713874 CCTTCTTACA
*
19713884 TTTCTTCT-TTTTTCTT
1 TTTCTTCTCTTTCTC-T
19713900 TTTCTTCTCTTTCTCT
1 TTTCTTCTCTTTCTCT
19713916 TTTCTTCCTCTT
1 TTTCTT-CTCTT
19713928 GGGTGGAGCT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
16 15 0.60
17 10 0.40
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (16 bp):
TTTCTTCTCTTTCTCT
Found at i:19715366 original size:33 final size:33
Alignment explanation
Indices: 19715283--19715354 Score: 117
Period size: 33 Copynumber: 2.2 Consensus size: 33
19715273 TGTAAGGGTG
* *
19715283 CTTGATCCTGCAAAAAGCATTGTAAAGGTTTCA
1 CTTGATCCCGTAAAAAGCATTGTAAAGGTTTCA
*
19715316 CTTGATCCCGTAAAAAGCATTGTAAGGGTTTCA
1 CTTGATCCCGTAAAAAGCATTGTAAAGGTTTCA
19715349 CTTGAT
1 CTTGAT
19715355 TTTGTAAAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32
Consensus pattern (33 bp):
CTTGATCCCGTAAAAAGCATTGTAAAGGTTTCA
Found at i:19715552 original size:37 final size:36
Alignment explanation
Indices: 19715502--19715578 Score: 118
Period size: 37 Copynumber: 2.1 Consensus size: 36
19715492 CTTGCATTTA
* *
19715502 GCTTAGGAAAATATTTTACCTTGATTTATTAATTTTT
1 GCTTAGGAAAATATTTTACATTGAATTATT-ATTTTT
*
19715539 GCTTAGGAAAATATTTTATATTGAATTATTATTTTT
1 GCTTAGGAAAATATTTTACATTGAATTATTATTTTT
19715575 GCTT
1 GCTT
19715579 GCACTTGACT
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
36 10 0.27
37 27 0.73
ACGTcount: A:0.30, C:0.06, G:0.12, T:0.52
Consensus pattern (36 bp):
GCTTAGGAAAATATTTTACATTGAATTATTATTTTT
Found at i:19715597 original size:47 final size:46
Alignment explanation
Indices: 19715540--19715721 Score: 185
Period size: 47 Copynumber: 3.9 Consensus size: 46
19715530 TTAATTTTTG
*
19715540 CTTAGGAAAATATTTTATATTGAATTATTATTT-TTGC-TTGCACTTGA
1 CTTAGGAAAATATTTTATATTGATTTATTATTTGTT-CATT--ACTTGA
* *
19715587 CTTAGAAAAATATTCTTACT-TTGATTTATTATTTGTTCATTATTTGA
1 CTTAGGAAAATATT-TTA-TATTGATTTATTATTTGTTCATTACTTGA
* *
19715634 CTTAGGAAAATATTTT-TACTTTGATTTATTATTTGTTCATTATTTAA
1 CTTAGGAAAATATTTTATA--TTGATTTATTATTTGTTCATTACTTGA
* *
19715681 CTTAGGAAAATATCTTTACT-TTGATGTATTATTTGCTCATT
1 CTTAGGAAAATAT-TTTA-TATTGATTTATTATTTGTTCATT
19715722 TCAATTTATT
Statistics
Matches: 118, Mismatches: 7, Indels: 20
0.81 0.05 0.14
Matches are distributed among these distances:
44 1 0.01
46 2 0.02
47 89 0.75
48 20 0.17
49 5 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.09, G:0.10, T:0.52
Consensus pattern (46 bp):
CTTAGGAAAATATTTTATATTGATTTATTATTTGTTCATTACTTGA
Found at i:19715701 original size:94 final size:92
Alignment explanation
Indices: 19715536--19715721 Score: 227
Period size: 94 Copynumber: 2.0 Consensus size: 92
19715526 TTTATTAATT
*
19715536 TTTGCTTAGGAAAATATTTTATATTGAATTATTATTTTTGCTTGCACTTGACTTAGAAAAATATT
1 TTTGCTTAGGAAAATATTTTATATTGAATTATTATTTTTGCTT-CACTTAACTTAGAAAAATATT
* *
19715601 CTTACTTTGATTTATTATTTGTTCATTA
65 CTTACTTTGATGTATTATTTGCTCATTA
* * *
19715629 TTTGACTTAGGAAAATATTTT-TACTTTGATTTATTATTTGTT-CATT-ATTTAACTTAGGAAAA
1 TTTG-CTTAGGAAAATATTTTATA--TTGAATTATTATTT-TTGC-TTCACTTAACTTAGAAAAA
19715691 TA-TCTTTACTTTGATGTATTATTTGCTCATT
61 TATTC-TTACTTTGATGTATTATTTGCTCATT
19715722 TCAATTTATT
Statistics
Matches: 81, Mismatches: 6, Indels: 11
0.83 0.06 0.11
Matches are distributed among these distances:
93 8 0.10
94 55 0.68
95 14 0.17
96 4 0.05
ACGTcount: A:0.28, C:0.09, G:0.11, T:0.52
Consensus pattern (92 bp):
TTTGCTTAGGAAAATATTTTATATTGAATTATTATTTTTGCTTCACTTAACTTAGAAAAATATTC
TTACTTTGATGTATTATTTGCTCATTA
Found at i:19725590 original size:40 final size:39
Alignment explanation
Indices: 19725532--19725635 Score: 120
Period size: 38 Copynumber: 2.7 Consensus size: 39
19725522 ATCTAGCTCA
* * *
19725532 TGTGCATCCCCCCGCATCGTGCACATAGCCGGAGTCATCG
1 TGTGCATCCCCCCACATCGTGCACATA-CCAGAGCCATCG
* ** *
19725572 TGTGCAACCCCCCACATCGTGCACA-ATTAGTGCCATCG
1 TGTGCATCCCCCCACATCGTGCACATACCAGAGCCATCG
*
19725610 TGTGCATCCCCCCACATCATGCACAT
1 TGTGCATCCCCCCACATCGTGCACAT
19725636 GAGCACTTTC
Statistics
Matches: 54, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
38 30 0.56
39 1 0.02
40 23 0.43
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (39 bp):
TGTGCATCCCCCCACATCGTGCACATACCAGAGCCATCG
Found at i:19730938 original size:47 final size:47
Alignment explanation
Indices: 19730877--19730987 Score: 168
Period size: 47 Copynumber: 2.4 Consensus size: 47
19730867 TTTCTTACAC
*
19730877 TTGACTTTGGAAAATATTCTTACTTTGATTTATTATTTGTTCATCAT
1 TTGACTTAGGAAAATATTCTTACTTTGATTTATTATTTGTTCATCAT
* * * *
19730924 TTGACTTAGAAAAATATTTTTACTTTGATTTATTATTTGTTCGTTAT
1 TTGACTTAGGAAAATATTCTTACTTTGATTTATTATTTGTTCATCAT
*
19730971 TTGACTAAGGAAAATAT
1 TTGACTTAGGAAAATAT
19730988 CTGCGACGAC
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 57 1.00
ACGTcount: A:0.30, C:0.08, G:0.12, T:0.50
Consensus pattern (47 bp):
TTGACTTAGGAAAATATTCTTACTTTGATTTATTATTTGTTCATCAT
Found at i:19732672 original size:2 final size:2
Alignment explanation
Indices: 19732665--19732716 Score: 104
Period size: 2 Copynumber: 26.0 Consensus size: 2
19732655 TTTACATCTA
19732665 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
19732707 AT AT AT AT AT
1 AT AT AT AT AT
19732717 TTCAAATGAT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:19733263 original size:24 final size:25
Alignment explanation
Indices: 19733213--19733295 Score: 132
Period size: 25 Copynumber: 3.3 Consensus size: 25
19733203 TTTATTTTTA
19733213 TTTCTTATTGGGTCATGCCCACTTAT
1 TTTC-TATTGGGTCATGCCCACTTAT
19733239 TTTCTATTGGGTCATG-CCACTTAT
1 TTTCTATTGGGTCATGCCCACTTAT
* *
19733263 TTTCTATTAGGTCATGCCCATTTAT
1 TTTCTATTGGGTCATGCCCACTTAT
19733288 TTTCTATT
1 TTTCTATT
19733296 TCTTTTCTTT
Statistics
Matches: 54, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
24 23 0.43
25 27 0.50
26 4 0.07
ACGTcount: A:0.17, C:0.20, G:0.13, T:0.49
Consensus pattern (25 bp):
TTTCTATTGGGTCATGCCCACTTAT
Found at i:19733324 original size:16 final size:16
Alignment explanation
Indices: 19733287--19733321 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
19733277 TGCCCATTTA
19733287 TTTTCTATTTCTTTTC
1 TTTTCTATTTCTTTTC
*
19733303 TTTTCTTTTTC-TTTC
1 TTTTCTATTTCTTTTC
19733318 TTTT
1 TTTT
19733322 TCTCTCTTCC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.03, C:0.17, G:0.00, T:0.80
Consensus pattern (16 bp):
TTTTCTATTTCTTTTC
Found at i:19733396 original size:22 final size:22
Alignment explanation
Indices: 19733368--19733418 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
19733358 GCCCGTCACT
19733368 TCCCTTCACCACCGTGGCTTCC
1 TCCCTTCACCACCGTGGCTTCC
19733390 TCCCTTCACCACCGTGGCTTCC
1 TCCCTTCACCACCGTGGCTTCC
*
19733412 TCTCTTC
1 TCCCTTC
19733419 CTTTCCTCTC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.08, C:0.49, G:0.12, T:0.31
Consensus pattern (22 bp):
TCCCTTCACCACCGTGGCTTCC
Found at i:19733661 original size:33 final size:34
Alignment explanation
Indices: 19733601--19733673 Score: 103
Period size: 33 Copynumber: 2.2 Consensus size: 34
19733591 TTTTTTTGCA
* *
19733601 AATTTTTTGCACGAAATTGGCAACAAACAGGTCC
1 AATTTTCTGCACGAAATTGGCAACAAACAGCTCC
* *
19733635 AATTTTCTGCAC-AAATTGGCAGCAAACAGCTCT
1 AATTTTCTGCACGAAATTGGCAACAAACAGCTCC
19733668 AATTTT
1 AATTTT
19733674 TCAGCAGCAA
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
33 24 0.69
34 11 0.31
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.30
Consensus pattern (34 bp):
AATTTTCTGCACGAAATTGGCAACAAACAGCTCC
Found at i:19733675 original size:34 final size:34
Alignment explanation
Indices: 19733601--19733684 Score: 100
Period size: 33 Copynumber: 2.5 Consensus size: 34
19733591 TTTTTTTGCA
*
19733601 AATTTTT-TGCACGAAATTGGCAACAAACAGGTCC
1 AATTTTTCTGCAC-AAATTGGCAACAAACAGCTCC
* *
19733635 AA-TTTTCTGCACAAATTGGCAGCAAACAGCTCT
1 AATTTTTCTGCACAAATTGGCAACAAACAGCTCC
*
19733668 AATTTTTCAGCAGCAAA
1 AATTTTTCTGCA-CAAA
19733685 AATTGTCCCT
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
33 24 0.56
34 15 0.35
35 4 0.09
ACGTcount: A:0.36, C:0.21, G:0.15, T:0.27
Consensus pattern (34 bp):
AATTTTTCTGCACAAATTGGCAACAAACAGCTCC
Found at i:19733801 original size:22 final size:22
Alignment explanation
Indices: 19733775--19733828 Score: 58
Period size: 23 Copynumber: 2.4 Consensus size: 22
19733765 TTTTAGAACC
19733775 AAAATCAGCCATA-ATAACCTCA
1 AAAATCAGCCA-ACATAACCTCA
19733797 AAAATTCCAG-CAACATAACCTCA
1 AAAA-T-CAGCCAACATAACCTCA
*
19733820 AAATTCAGC
1 AAAATCAGC
19733829 TTTCTTACCT
Statistics
Matches: 27, Mismatches: 1, Indels: 8
0.75 0.03 0.22
Matches are distributed among these distances:
21 3 0.11
22 6 0.22
23 15 0.56
24 3 0.11
ACGTcount: A:0.48, C:0.28, G:0.06, T:0.19
Consensus pattern (22 bp):
AAAATCAGCCAACATAACCTCA
Found at i:19735881 original size:19 final size:19
Alignment explanation
Indices: 19735859--19735913 Score: 55
Period size: 16 Copynumber: 3.0 Consensus size: 19
19735849 TTCATTTTGG
19735859 TATTTATTTTTATTTTTAT
1 TATTTATTTTTATTTTTAT
*
19735878 TA-TTA-GTTTA-TTTT-T
1 TATTTATTTTTATTTTTAT
19735893 TATTTATTATTTCATTTTTAT
1 TATTTATT-TTT-ATTTTTAT
19735914 GGTAATAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 10
0.70 0.05 0.25
Matches are distributed among these distances:
15 3 0.11
16 7 0.25
17 4 0.14
18 6 0.21
19 3 0.11
20 4 0.14
21 1 0.04
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.75
Consensus pattern (19 bp):
TATTTATTTTTATTTTTAT
Found at i:19735892 original size:18 final size:18
Alignment explanation
Indices: 19735859--19735911 Score: 67
Period size: 19 Copynumber: 3.0 Consensus size: 18
19735849 TTCATTTTGG
19735859 TATTTATT-TTTA-TTTT
1 TATTTATTATTTATTTTT
19735875 TA-TTATTAGTTTATTTTT
1 TATTTATTA-TTTATTTTT
19735893 TATTTATTATTTCATTTTT
1 TATTTATTATTT-ATTTTT
19735912 ATGGTAATAA
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
15 5 0.16
16 2 0.06
17 4 0.12
18 9 0.28
19 12 0.38
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.75
Consensus pattern (18 bp):
TATTTATTATTTATTTTT
Found at i:19735898 original size:22 final size:23
Alignment explanation
Indices: 19735861--19735903 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
19735851 CATTTTGGTA
*
19735861 TTTATTTTTATTTTTATTATTAG
1 TTTATTTTTATATTTATTATTAG
19735884 TTTATTTTT-TATTTATTATT
1 TTTATTTTTATATTTATTATT
19735904 TCATTTTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.21, C:0.00, G:0.02, T:0.77
Consensus pattern (23 bp):
TTTATTTTTATATTTATTATTAG
Found at i:19735912 original size:18 final size:17
Alignment explanation
Indices: 19735859--19735913 Score: 69
Period size: 18 Copynumber: 3.2 Consensus size: 17
19735849 TTCATTTTGG
19735859 TATTTATT-TTTATTTT
1 TATTTATTATTTATTTT
19735875 TA-TTATTAGTTTATTTTT
1 TATTTATTA-TTTA-TTTT
19735893 TATTTATTATTTCATTTT
1 TATTTATTATTT-ATTTT
19735911 TAT
1 TAT
19735914 GGTAATAATA
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
15 5 0.15
16 2 0.06
17 4 0.12
18 16 0.47
19 7 0.21
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.75
Consensus pattern (17 bp):
TATTTATTATTTATTTT
Found at i:19736244 original size:24 final size:23
Alignment explanation
Indices: 19736203--19736247 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
19736193 TTCAAATTAA
19736203 TAAAAAAATTTAAAATAAATATG
1 TAAAAAAATTTAAAATAAATATG
* *
19736226 TAAAATAAGTTTAACATAAATA
1 TAAAA-AAATTTAAAATAAATA
19736248 AATAAATGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 5 0.26
24 14 0.74
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.31
Consensus pattern (23 bp):
TAAAAAAATTTAAAATAAATATG
Found at i:19736253 original size:24 final size:23
Alignment explanation
Indices: 19736196--19736253 Score: 62
Period size: 24 Copynumber: 2.5 Consensus size: 23
19736186 TATTTATTTC
*
19736196 AAATTAATAAAAAAATTTAAAAT
1 AAATAAATAAAAAAATTTAAAAT
** * *
19736219 AAATATGTAAAATAAGTTTAACAT
1 AAATAAATAAAA-AAATTTAAAAT
19736243 AAATAAATAAA
1 AAATAAATAAA
19736254 TGAATGAGTA
Statistics
Matches: 27, Mismatches: 7, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
23 9 0.33
24 18 0.67
ACGTcount: A:0.66, C:0.02, G:0.03, T:0.29
Consensus pattern (23 bp):
AAATAAATAAAAAAATTTAAAAT
Found at i:19744874 original size:5 final size:5
Alignment explanation
Indices: 19744866--19744898 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
19744856 ACCTAACCTG
*
19744866 ACTTA ACTTA AC-TA ATTTA ACTTA ACTTA ACTT
1 ACTTA ACTTA ACTTA ACTTA ACTTA ACTTA ACTT
19744899 GAGCCACGCA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
4 3 0.12
5 22 0.88
ACGTcount: A:0.39, C:0.18, G:0.00, T:0.42
Consensus pattern (5 bp):
ACTTA
Found at i:19744953 original size:15 final size:15
Alignment explanation
Indices: 19744933--19744978 Score: 74
Period size: 15 Copynumber: 3.1 Consensus size: 15
19744923 TTCTTAAAAC
*
19744933 AACTTTAAAACCAAA
1 AACTTTAAAATCAAA
19744948 AACTTTAAAATCAAA
1 AACTTTAAAATCAAA
*
19744963 AGCTTTAAAATCAAA
1 AACTTTAAAATCAAA
19744978 A
1 A
19744979 TCTCTGATCT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.59, C:0.15, G:0.02, T:0.24
Consensus pattern (15 bp):
AACTTTAAAATCAAA
Found at i:19746198 original size:13 final size:13
Alignment explanation
Indices: 19746180--19746204 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
19746170 TTCCAAAAAA
19746180 TTTATAAAATCAT
1 TTTATAAAATCAT
19746193 TTTATAAAATCA
1 TTTATAAAATCA
19746205 CAATTTCTCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTTATAAAATCAT
Found at i:19747651 original size:19 final size:19
Alignment explanation
Indices: 19747627--19747664 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
19747617 CTGCCAAACC
19747627 CTCAAATTATACTCCAATA
1 CTCAAATTATACTCCAATA
19747646 CTCAAATTATACTCCAATA
1 CTCAAATTATACTCCAATA
19747665 AGTTAAATGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.26, G:0.00, T:0.32
Consensus pattern (19 bp):
CTCAAATTATACTCCAATA
Found at i:19748389 original size:26 final size:24
Alignment explanation
Indices: 19748339--19748393 Score: 65
Period size: 26 Copynumber: 2.2 Consensus size: 24
19748329 TTTTTAATTT
*
19748339 AAAAAATAACAAGAAGAAAATGAA
1 AAAAAATAACAAGAAGAAAAGGAA
* *
19748363 AAAAAATAGACAAGTAATATAAGGAA
1 AAAAAATA-ACAAG-AAGAAAAGGAA
19748389 AAAAA
1 AAAAA
19748394 GAAATTGAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
24 8 0.31
25 5 0.19
26 13 0.50
ACGTcount: A:0.73, C:0.04, G:0.13, T:0.11
Consensus pattern (24 bp):
AAAAAATAACAAGAAGAAAAGGAA
Found at i:19752791 original size:36 final size:36
Alignment explanation
Indices: 19752751--19752820 Score: 104
Period size: 36 Copynumber: 1.9 Consensus size: 36
19752741 TTAGAATGCT
* * * *
19752751 TTGAATTTAAAATTGATCTTAGAGGAGCTTGGTTGG
1 TTGAATTTAAAATAGATCTCAAAAGAGCTTGGTTGG
19752787 TTGAATTTAAAATAGATCTCAAAAGAGCTTGGTT
1 TTGAATTTAAAATAGATCTCAAAAGAGCTTGGTT
19752821 AAGAAATACA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.37
Consensus pattern (36 bp):
TTGAATTTAAAATAGATCTCAAAAGAGCTTGGTTGG
Found at i:19755410 original size:35 final size:35
Alignment explanation
Indices: 19755371--19755452 Score: 121
Period size: 35 Copynumber: 2.3 Consensus size: 35
19755361 TGCCATTTCA
*
19755371 GTAAGAATACCAC-TCAATTATAGCCCATTGTGGGG
1 GTAAGAATACCACATCAA-TATAGCCCATTGTGAGG
* *
19755406 GTAAGAGTACCACATGAATATAGCCCATTGTGAGG
1 GTAAGAATACCACATCAATATAGCCCATTGTGAGG
19755441 GTAAGAATACCA
1 GTAAGAATACCA
19755453 ACTTGACATT
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
35 39 0.93
36 3 0.07
ACGTcount: A:0.35, C:0.18, G:0.23, T:0.23
Consensus pattern (35 bp):
GTAAGAATACCACATCAATATAGCCCATTGTGAGG
Found at i:19761278 original size:2 final size:2
Alignment explanation
Indices: 19761266--19761300 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
19761256 TATGAAAACA
19761266 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
19761301 TGTAAAAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:19762944 original size:29 final size:29
Alignment explanation
Indices: 19762893--19762949 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
19762883 GAAGGCTCAA
* **
19762893 AATAATGTTGTGCATATGTTTGGCACATG
1 AATAATATTGTGCATATAATTGGCACATG
*
19762922 AATAATATTGTGCATTTAATTGGCACAT
1 AATAATATTGTGCATATAATTGGCACAT
19762950 AGATGAATAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.39
Consensus pattern (29 bp):
AATAATATTGTGCATATAATTGGCACATG
Found at i:19769266 original size:37 final size:37
Alignment explanation
Indices: 19769225--19769326 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
19769215 CATATGCATT
19769225 CATCATCATGTGTGCACTCCCTACTCGCACACTTCT-A
1 CATCATCATGTGTGCACTCCCTACTCGCACAC-TCTAA
* *
19769262 CATCATCATGTGTTCACTCCCTACTCTCACACTCTAA
1 CATCATCATGTGTGCACTCCCTACTCGCACACTCTAA
19769299 CATCATCATGTGTGCACTCCCTACTCGC
1 CATCATCATGTGTGCACTCCCTACTCGC
19769327 GGACTTCAAC
Statistics
Matches: 60, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
36 3 0.05
37 57 0.95
ACGTcount: A:0.22, C:0.38, G:0.10, T:0.30
Consensus pattern (37 bp):
CATCATCATGTGTGCACTCCCTACTCGCACACTCTAA
Found at i:19769338 original size:37 final size:37
Alignment explanation
Indices: 19769225--19769339 Score: 169
Period size: 37 Copynumber: 3.1 Consensus size: 37
19769215 CATATGCATT
*
19769225 CATCATCATGTGTGCACTCCCTACTCGCACACTTCTA
1 CATCATCATGTGTGCACTCCCTACTCGCACACTTCAA
* *
19769262 CATCATCATGTGTTCACTCCCTACTCTCACAC-TCTAA
1 CATCATCATGTGTGCACTCCCTACTCGCACACTTC-AA
**
19769299 CATCATCATGTGTGCACTCCCTACTCGCGGACTTCAA
1 CATCATCATGTGTGCACTCCCTACTCGCACACTTCAA
19769336 CATC
1 CATC
19769340 CTCACACAAC
Statistics
Matches: 69, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
36 2 0.03
37 65 0.94
38 2 0.03
ACGTcount: A:0.23, C:0.37, G:0.10, T:0.30
Consensus pattern (37 bp):
CATCATCATGTGTGCACTCCCTACTCGCACACTTCAA
Found at i:19776768 original size:2 final size:2
Alignment explanation
Indices: 19776761--19776797 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
19776751 TATAATGTTG
*
19776761 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
19776798 GTACATTGAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
AT
Found at i:19798066 original size:37 final size:37
Alignment explanation
Indices: 19798009--19798102 Score: 152
Period size: 37 Copynumber: 2.5 Consensus size: 37
19797999 GGCCTTTTTN
*
19798009 CGCACACTTCAACATTATCATGTGTGCACTCCCTACT
1 CGCACACTTCAACATCATCATGTGTGCACTCCCTACT
* * *
19798046 TGCACACTTTATCATCATCATGTGTGCACTCCCTACT
1 CGCACACTTCAACATCATCATGTGTGCACTCCCTACT
19798083 CGCACACTTCAACATCATCA
1 CGCACACTTCAACATCATCA
19798103 CACAACATTA
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 50 1.00
ACGTcount: A:0.26, C:0.35, G:0.10, T:0.30
Consensus pattern (37 bp):
CGCACACTTCAACATCATCATGTGTGCACTCCCTACT
Found at i:19800448 original size:16 final size:15
Alignment explanation
Indices: 19800443--19800521 Score: 74
Period size: 16 Copynumber: 5.3 Consensus size: 15
19800433 AAGGAGAAAG
19800443 GAAAGAAAGAAAGGA
1 GAAAGAAAGAAAGGA
19800458 GAAAAGAAAGAAAGGA
1 G-AAAGAAAGAAAGGA
*
19800474 GAAAGGAAAGGAAGGA
1 GAAA-GAAAGAAAGGA
*
19800490 G-AAG-AAGATA-GA
1 GAAAGAAAGAAAGGA
* *
19800502 AAAAGAGAGAAAGGAA
1 GAAAGAAAGAAAGG-A
19800518 GAAA
1 GAAA
19800522 AAAAAAACCT
Statistics
Matches: 51, Mismatches: 7, Indels: 11
0.74 0.10 0.16
Matches are distributed among these distances:
12 2 0.04
13 7 0.14
14 5 0.10
15 7 0.14
16 30 0.59
ACGTcount: A:0.65, C:0.00, G:0.34, T:0.01
Consensus pattern (15 bp):
GAAAGAAAGAAAGGA
Found at i:19800454 original size:20 final size:20
Alignment explanation
Indices: 19800429--19800483 Score: 82
Period size: 16 Copynumber: 3.0 Consensus size: 20
19800419 GGTCGGTTGG
19800429 AAGAAAGGAGAAAGGAAAGA
1 AAGAAAGGAGAAAGGAAAGA
19800449 AAGAAAGGAG--A--AAAGA
1 AAGAAAGGAGAAAGGAAAGA
19800465 AAGAAAGGAGAAAGGAAAG
1 AAGAAAGGAGAAAGGAAAG
19800484 GAAGGAGAAG
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
16 15 0.48
18 2 0.06
20 14 0.45
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (20 bp):
AAGAAAGGAGAAAGGAAAGA
Found at i:19800512 original size:36 final size:32
Alignment explanation
Indices: 19800443--19800521 Score: 90
Period size: 32 Copynumber: 2.4 Consensus size: 32
19800433 AAGGAGAAAG
*
19800443 GAAA-GAAAGAAAGGAGAAAAGAAAGAAAGGA
1 GAAAGGAAAGAAAGGAGAAAAGAAAAAAAGGA
*
19800474 GAAAGGAAAGGAAGGAGAAGAAGATAGAAAAAGAGA
1 GAAAGGAAAGAAAGGAGAA-AAGA-A-AAAAAG-GA
19800510 GAAAGG-AAGAAA
1 GAAAGGAAAGAAA
19800522 AAAAAAACCT
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
31 4 0.10
32 13 0.32
33 4 0.10
34 1 0.03
35 10 0.25
36 8 0.20
ACGTcount: A:0.65, C:0.00, G:0.34, T:0.01
Consensus pattern (32 bp):
GAAAGGAAAGAAAGGAGAAAAGAAAAAAAGGA
Found at i:19801037 original size:41 final size:41
Alignment explanation
Indices: 19800992--19801239 Score: 371
Period size: 41 Copynumber: 6.1 Consensus size: 41
19800982 CGGAAGTGTG
19800992 GATGATGATATTGCTTGTGCACGATGTGGGGGGATGCACAC
1 GATGATGATATTGCTTGTGCACGATGTGGGGGGATGCACAC
*
19801033 GATGATGATATTGTTTGTGCACGATGTGGGGGGATGCACAC
1 GATGATGATATTGCTTGTGCACGATGTGGGGGGATGCACAC
* *
19801074 AATGATGATATTGCTTGTGCACGATGTGGGGGGATGCACAG
1 GATGATGATATTGCTTGTGCACGATGTGGGGGGATGCACAC
*
19801115 GATGATG-TCATTGTTTGTGCACGATGTGGGGGGATGCACAC
1 GATGATGAT-ATTGCTTGTGCACGATGTGGGGGGATGCACAC
* *
19801156 AATGATGATATTGCTTGTGCACGATGTAGGGGGATGCACAC
1 GATGATGATATTGCTTGTGCACGATGTGGGGGGATGCACAC
* *
19801197 GATG--G-TATTAGC-TATGCACAATGTGGGGGGATGCACAC
1 GATGATGATATT-GCTTGTGCACGATGTGGGGGGATGCACAC
19801235 GATGA
1 GATGA
19801240 CTCCAGCTAT
Statistics
Matches: 189, Mismatches: 14, Indels: 10
0.89 0.07 0.05
Matches are distributed among these distances:
38 31 0.16
39 3 0.02
40 1 0.01
41 153 0.81
42 1 0.01
ACGTcount: A:0.24, C:0.14, G:0.35, T:0.27
Consensus pattern (41 bp):
GATGATGATATTGCTTGTGCACGATGTGGGGGGATGCACAC
Found at i:19801248 original size:38 final size:39
Alignment explanation
Indices: 19801008--19801265 Score: 195
Period size: 41 Copynumber: 6.4 Consensus size: 39
19800998 GATATTGCTT
* * *
19801008 GTGCACGATGTGGGGGGATGCACACGATGATGATAT-TGTTT
1 GTGCACGATGTGGGGGGATGCACACGATG--G-TATCAGCTA
* * *
19801049 GTGCACGATGTGGGGGGATGCACACAATGATGATAT-TGCTT
1 GTGCACGATGTGGGGGGATGCACAC---GATGGTATCAGCTA
* * * * *
19801090 GTGCACGATGTGGGGGGATGCACAGGATGATGTCATTGTTT
1 GTGCACGATGTGGGGGGATGCACACGATGGTATCA--GCTA
* * *
19801131 GTGCACGATGTGGGGGGATGCACACAATGATGATAT-TGCTT
1 GTGCACGATGTGGGGGGATGCACAC---GATGGTATCAGCTA
* *
19801172 GTGCACGATGTAGGGGGATGCACACGATGGTATTAGCTA
1 GTGCACGATGTGGGGGGATGCACACGATGGTATCAGCTA
*
19801211 -TGCACAATGTGGGGGGATGCACACGAT-G-ACTCCAGCTA
1 GTGCACGATGTGGGGGGATGCACACGATGGTA-T-CAGCTA
19801249 TGTGCACGATGTGGGGG
1 -GTGCACGATGTGGGGG
19801266 CTGCACATGA
Statistics
Matches: 185, Mismatches: 18, Indels: 29
0.80 0.08 0.12
Matches are distributed among these distances:
36 1 0.01
37 2 0.01
38 44 0.24
39 3 0.02
40 14 0.08
41 110 0.59
44 11 0.06
ACGTcount: A:0.23, C:0.15, G:0.36, T:0.26
Consensus pattern (39 bp):
GTGCACGATGTGGGGGGATGCACACGATGGTATCAGCTA
Done.