Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38630433
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 2298367 characters in sequence are not A, C, G, or T
File 65 of 97
Found at i:26214978 original size:16 final size:16
Alignment explanation
Indices: 26214957--26214998 Score: 68
Period size: 16 Copynumber: 2.6 Consensus size: 16
26214947 GCGAGATGAA
26214957 ACCACCATCTC-TACTT
1 ACCACCATC-CATACTT
26214973 ACCACCATCCATACTT
1 ACCACCATCCATACTT
26214989 ACCACCATCC
1 ACCACCATCC
26214999 TTATTGCGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
15 1 0.04
16 24 0.96
ACGTcount: A:0.29, C:0.48, G:0.00, T:0.24
Consensus pattern (16 bp):
ACCACCATCCATACTT
Found at i:26215667 original size:44 final size:44
Alignment explanation
Indices: 26215604--26215694 Score: 173
Period size: 44 Copynumber: 2.1 Consensus size: 44
26215594 CCTTTCACCA
26215604 TACAATAGCATTTAGCTCAAAAACTAGGGAATGGGTAAAATTCT
1 TACAATAGCATTTAGCTCAAAAACTAGGGAATGGGTAAAATTCT
*
26215648 TACAATAGCATTTAGCTCAAAAACTAGGGAATGGGTATAATTCT
1 TACAATAGCATTTAGCTCAAAAACTAGGGAATGGGTAAAATTCT
26215692 TAC
1 TAC
26215695 TCCCATTGTA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.29
Consensus pattern (44 bp):
TACAATAGCATTTAGCTCAAAAACTAGGGAATGGGTAAAATTCT
Found at i:26219869 original size:21 final size:21
Alignment explanation
Indices: 26219843--26219882 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
26219833 CCTGAAGCCC
*
26219843 ATCTATCAATAGATTACGTCG
1 ATCTATCAATAGATGACGTCG
26219864 ATCTATCAATAGATGACGT
1 ATCTATCAATAGATGACGT
26219883 TATTTTCAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (21 bp):
ATCTATCAATAGATGACGTCG
Found at i:26235617 original size:60 final size:61
Alignment explanation
Indices: 26235521--26235670 Score: 187
Period size: 60 Copynumber: 2.5 Consensus size: 61
26235511 ATAAAAGACC
* * * * * * *
26235521 AAAACAGAAGGTTTTTCGCTGCAGCGAGATTGAATCTCGCTGCAGCGAAATTTCTACCCA-
1 AAAACAGAAAGTTTCTCGCTGCAGCGAGATTCAATCTCGCTACAGCAAAATTGCAACCCAG
* *
26235581 TAAACA-AAATGTTTCTTGCTGCAGCGAGATTCAATCTCGCTACAGCAAAATTGCAACCCAG
1 AAAACAGAAA-GTTTCTCGCTGCAGCGAGATTCAATCTCGCTACAGCAAAATTGCAACCCAG
*
26235642 AAAACAGAAAGTTTCTCACTGCAGCGAGA
1 AAAACAGAAAGTTTCTCGCTGCAGCGAGA
26235671 ATGCATTTTG
Statistics
Matches: 75, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
59 2 0.03
60 48 0.64
61 22 0.29
62 3 0.04
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.23
Consensus pattern (61 bp):
AAAACAGAAAGTTTCTCGCTGCAGCGAGATTCAATCTCGCTACAGCAAAATTGCAACCCAG
Found at i:26252165 original size:31 final size:31
Alignment explanation
Indices: 26252137--26252370 Score: 216
Period size: 31 Copynumber: 7.5 Consensus size: 31
26252127 TGAGACACTC
* *
26252137 CATGCAAAACAAGTAAAATGTTGTGACACGT
1 CATGCATAACAAGTAAAATGTTCTGACACGT
* * ** * *
26252168 CGTGTATATGAAGTAAAATATTCTAACACGT
1 CATGCATAACAAGTAAAATGTTCTGACACGT
* * * *
26252199 CATGCATAAAAAGTAAATTGTTTTGACACGC
1 CATGCATAACAAGTAAAATGTTCTGACACGT
* * * *
26252230 CATGCATAACAAGTTAAACGTTGTGACACGC
1 CATGCATAACAAGTAAAATGTTCTGACACGT
* * *
26252261 CATGCATAACAATTAAATTGTTCTGACCCGT
1 CATGCATAACAAGTAAAATGTTCTGACACGT
* * * *
26252292 CATGAATAACAAGTAAATTGTTCTGACCCGC
1 CATGCATAACAAGTAAAATGTTCTGACACGT
* * * *
26252323 CATGCATAACAAGTTAAACGTTGTAACACGT
1 CATGCATAACAAGTAAAATGTTCTGACACGT
*
26252354 CATGCATAACAATTAAA
1 CATGCATAACAAGTAAA
26252371 TTTATAAGTC
Statistics
Matches: 161, Mismatches: 42, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
31 161 1.00
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (31 bp):
CATGCATAACAAGTAAAATGTTCTGACACGT
Found at i:26252371 original size:93 final size:93
Alignment explanation
Indices: 26252130--26252372 Score: 315
Period size: 93 Copynumber: 2.6 Consensus size: 93
26252120 ATAAATATGA
* * * * * * ** * *
26252130 GACACTCCATGCAAAACAAGTAAAATGTTGTGACACGTCGTGTATATGAAGTAAAATATTCTAAC
1 GACACGCCATGCATAACAAGTTAAACGTTGTGACACGTCATGCATAACAATTAAATTATTCTAAC
* *
26252195 ACGTCATGCATAAAAAGTAAATTGTTTT
66 ACGTCATGAATAAAAAGTAAATTGTTCT
* * *
26252223 GACACGCCATGCATAACAAGTTAAACGTTGTGACACGCCATGCATAACAATTAAATTGTTCTGAC
1 GACACGCCATGCATAACAAGTTAAACGTTGTGACACGTCATGCATAACAATTAAATTATTCTAAC
* *
26252288 CCGTCATGAATAACAAGTAAATTGTTCT
66 ACGTCATGAATAAAAAGTAAATTGTTCT
* *
26252316 GACCCGCCATGCATAACAAGTTAAACGTTGTAACACGTCATGCATAACAATTAAATT
1 GACACGCCATGCATAACAAGTTAAACGTTGTGACACGTCATGCATAACAATTAAATT
26252373 TATAAGTCTT
Statistics
Matches: 130, Mismatches: 20, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 130 1.00
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (93 bp):
GACACGCCATGCATAACAAGTTAAACGTTGTGACACGTCATGCATAACAATTAAATTATTCTAAC
ACGTCATGAATAAAAAGTAAATTGTTCT
Found at i:26252517 original size:31 final size:31
Alignment explanation
Indices: 26252482--26252594 Score: 79
Period size: 31 Copynumber: 3.6 Consensus size: 31
26252472 GAATTACGAT
*
26252482 GTCACACGCTGACTTCTTGCAGATTTATGGG
1 GTCACACGCTGACTGCTTGCAGATTTATGGG
* * ** *
26252513 GTCACAGGCTGAGTGCAAGCAGATATATGTGG
1 GTCACACGCTGACTGCTTGCAGATTTATG-GG
* * * *
26252545 G-GACACGCTGAGTGGTAT-CATG-TTTATGGT
1 GTCACACGCTGACTGCT-TGCA-GATTTATGGG
*
26252575 GTCACACGCTGACTTCTTGC
1 GTCACACGCTGACTGCTTGC
26252595 GACTGTGTAT
Statistics
Matches: 60, Mismatches: 17, Indels: 10
0.69 0.20 0.11
Matches are distributed among these distances:
30 3 0.05
31 53 0.88
32 4 0.07
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (31 bp):
GTCACACGCTGACTGCTTGCAGATTTATGGG
Found at i:26252761 original size:14 final size:14
Alignment explanation
Indices: 26252742--26252806 Score: 51
Period size: 14 Copynumber: 4.3 Consensus size: 14
26252732 GTTTACAATG
26252742 AATTGTATAAAATA
1 AATTGTATAAAATA
26252756 AATTGTGTATACAAA-A
1 AA-T-TGTATA-AAATA
*
26252772 AATTTATGTATAAAATT
1 AA--T-TGTATAAAATA
*
26252789 AATTGTATAAAAAA
1 AATTGTATAAAATA
26252803 AATT
1 AATT
26252807 CTGTACACAA
Statistics
Matches: 42, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
14 15 0.36
15 2 0.05
16 12 0.29
17 13 0.31
ACGTcount: A:0.54, C:0.02, G:0.08, T:0.37
Consensus pattern (14 bp):
AATTGTATAAAATA
Found at i:26252764 original size:16 final size:15
Alignment explanation
Indices: 26252744--26252811 Score: 59
Period size: 16 Copynumber: 4.3 Consensus size: 15
26252734 TTACAATGAA
26252744 TTGTATAAAATAAAT
1 TTGTATAAAATAAAT
26252759 TGTGTATACAAA-AAATT
1 T-TGTATA-AAATAAA-T
*
26252776 TATGTATAAAATTAA-
1 T-TGTATAAAATAAAT
*
26252791 TTGTATAAAAAAAAT
1 TTGTATAAAATAAAT
26252806 TCTGTA
1 T-TGTA
26252812 CACAAAAAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
14 11 0.26
15 3 0.07
16 16 0.37
17 13 0.30
ACGTcount: A:0.50, C:0.03, G:0.09, T:0.38
Consensus pattern (15 bp):
TTGTATAAAATAAAT
Found at i:26252783 original size:33 final size:31
Alignment explanation
Indices: 26252745--26252806 Score: 88
Period size: 31 Copynumber: 1.9 Consensus size: 31
26252735 TACAATGAAT
*
26252745 TGTATAAAATAAATTGTGTATACAAAAAATTTA
1 TGTATAAAATAAA-T-TGTATAAAAAAAATTTA
*
26252778 TGTATAAAATTAATTGTATAAAAAAAATT
1 TGTATAAAATAAATTGTATAAAAAAAATT
26252807 CTGTACACAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
31 14 0.52
32 1 0.04
33 12 0.44
ACGTcount: A:0.53, C:0.02, G:0.08, T:0.37
Consensus pattern (31 bp):
TGTATAAAATAAATTGTATAAAAAAAATTTA
Found at i:26252792 original size:17 final size:16
Alignment explanation
Indices: 26252745--26252792 Score: 51
Period size: 17 Copynumber: 2.9 Consensus size: 16
26252735 TACAATGAAT
* *
26252745 TGTATAAAATAAATTG
1 TGTATAAAATAATTTA
*
26252761 TGTATACAAAAAATTTA
1 TGTATA-AAATAATTTA
26252778 TGTATAAAATTAATT
1 TGTATAAAA-TAATT
26252793 GTATAAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
16 9 0.35
17 17 0.65
ACGTcount: A:0.50, C:0.02, G:0.08, T:0.40
Consensus pattern (16 bp):
TGTATAAAATAATTTA
Found at i:26252793 original size:47 final size:47
Alignment explanation
Indices: 26252647--26252825 Score: 164
Period size: 47 Copynumber: 3.7 Consensus size: 47
26252637 AAAATTCTTG
* * * *
26252647 GTATCAAATTAATTGTATATAGGCAAAAAA-TTGTGTATAAAA-TAATT
1 GTATAAAATAAATTGTGTATA--CAAAAAATTTATGTATAAAATTAATT
* * * * *
26252694 GTATAAAGTATATTGTGTATACAGAAAGAATTAATTATGTTTACAATGAATT
1 GTATAAAATAAATTGTGTATACA-AAA-AA-T--TTATGTATAAAATTAATT
26252746 GTATAAAATAAATTGTGTATACAAAAAATTTATGTATAAAATTAATT
1 GTATAAAATAAATTGTGTATACAAAAAATTTATGTATAAAATTAATT
* * * *
26252793 GTATAAAAAAAATTCTGTACACAAAAAAATTAT
1 GTATAAAATAAATTGTGTATACAAAAAATTTAT
26252826 ACAAACAAGG
Statistics
Matches: 107, Mismatches: 18, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
45 2 0.02
46 3 0.03
47 62 0.58
49 1 0.01
50 2 0.02
51 12 0.11
52 25 0.23
ACGTcount: A:0.49, C:0.04, G:0.11, T:0.36
Consensus pattern (47 bp):
GTATAAAATAAATTGTGTATACAAAAAATTTATGTATAAAATTAATT
Found at i:26254393 original size:31 final size:31
Alignment explanation
Indices: 26254358--26254624 Score: 286
Period size: 31 Copynumber: 8.6 Consensus size: 31
26254348 AACCATAAAC
* * *
26254358 AGTAAAATGTTGTGACACGTCGTGCATATCA
1 AGTAAAATGTTGTGACACGCCATGCATAACA
* * *
26254389 AGTAAAATGTTGTCATACGCCATGCAAAACA
1 AGTAAAATGTTGTGACACGCCATGCATAACA
*
26254420 AGTAAAATGTTGTGACATGCCATGCATAACA
1 AGTAAAATGTTGTGACACGCCATGCATAACA
* * *
26254451 AGT-ATACGTTGTGACACGCCATCCATAACA
1 AGTAAAATGTTGTGACACGCCATGCATAACA
* * *
26254481 AGCAAATTGTTGTGACACGCCGA-GGATAACA
1 AGTAAAATGTTGTGACACGCC-ATGCATAACA
* * *
26254512 AGCAAAATGTTCTGACACGCCATGCATATCA
1 AGTAAAATGTTGTGACACGCCATGCATAACA
* * * * *
26254543 AATCAAATGTCGTGACACGTCATGAATAACA
1 AGTAAAATGTTGTGACACGCCATGCATAACA
* *
26254574 AGTAAAATGTTATGACACGCCATGCATATCA
1 AGTAAAATGTTGTGACACGCCATGCATAACA
* *
26254605 AGTCAAATGTTGTCACACGC
1 AGTAAAATGTTGTGACACGC
26254625 TAAGGCTGAC
Statistics
Matches: 191, Mismatches: 42, Indels: 6
0.80 0.18 0.03
Matches are distributed among these distances:
30 26 0.14
31 164 0.86
32 1 0.01
ACGTcount: A:0.37, C:0.21, G:0.19, T:0.24
Consensus pattern (31 bp):
AGTAAAATGTTGTGACACGCCATGCATAACA
Found at i:26255268 original size:156 final size:156
Alignment explanation
Indices: 26254980--26255304 Score: 431
Period size: 156 Copynumber: 2.1 Consensus size: 156
26254970 CAACTGGATC
* *
26254980 AACTGCAATAACATATATAACTGTGTTATTCAATAATCATATATGGAATTGTTGAACATTAACCG
1 AACTGCAATTACATATATAACTGTGTTATTCAATAATCATATATGAAATTGTTGAACATTAACCG
* * * *
26255045 TTACAACTTTAATATCCTAACATATGGCTCGTTAGTAGTCTGCAGTGGAGTCGAACCAATCAATG
66 TTACAACTTTAATATCCTAACATACGGCTCATTAGTAGTCTACAGTGGAGCCGAACCAATCAATG
*
26255110 CTTGAGGACCTGTCGTCGCTTCC-TCA
131 CTTGAGGACCTGTAGTCGCTTCCGT-A
* *
26255136 AACTGCAATTACATTTATAACTGTGTTATTCAATAATCATGTATGAAATTGTTGAACATTAACCG
1 AACTGCAATTACATATATAACTGTGTTATTCAATAATCATATATGAAATTGTTGAACATTAACCG
* * * ** * * **
26255201 TTACAACTTTAATATCCTTAC-TGCCGGCTCATTAGCT-GTCTACGGTTTAGCCGGACCGATCGG
66 TTACAACTTTAATATCCTAACAT-ACGGCTCATTAG-TAGTCTACAGTGGAGCCGAACCAATCAA
26255264 TGCTTGAGGACCTGTAGTCGCTTCCGTA
129 TGCTTGAGGACCTGTAGTCGCTTCCGTA
*
26255292 AACTGTAATTACA
1 AACTGCAATTACA
26255305 GAAATTACTA
Statistics
Matches: 147, Mismatches: 19, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
155 1 0.01
156 144 0.98
157 2 0.01
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (156 bp):
AACTGCAATTACATATATAACTGTGTTATTCAATAATCATATATGAAATTGTTGAACATTAACCG
TTACAACTTTAATATCCTAACATACGGCTCATTAGTAGTCTACAGTGGAGCCGAACCAATCAATG
CTTGAGGACCTGTAGTCGCTTCCGTA
Found at i:26257006 original size:31 final size:30
Alignment explanation
Indices: 26256963--26257197 Score: 263
Period size: 31 Copynumber: 7.6 Consensus size: 30
26256953 AATAAGGAAT
* *
26256963 AAATATTGTGACACGCCATGCATTGCAAGCA
1 AAATGTTGTGACACGCCATGCATT-CAAGTA
*
26256994 AAATGTTGTGACACGCCATGCATTATAAGTA
1 AAATGTTGTGACACGCCATGCATT-CAAGTA
* *
26257025 AAATGTTGTGACACGCCATGCATAACAAGTT
1 AAATGTTGTGACACGCCATGCAT-TCAAGTA
*
26257056 AAACGTTGTGACACGCCATGCATATCAAGTA
1 AAATGTTGTGACACGCCATGCAT-TCAAGTA
*** *
26257087 AAACACTGTGACACGCCATGCATAACAAGTA
1 AAATGTTGTGACACGCCATGCAT-TCAAGTA
* *
26257118 AAACGCTGTGACACGCCATGCATATCAAGTA
1 AAATGTTGTGACACGCCATGCAT-TCAAGTA
* * *
26257149 AAATGCTATCACACGCCATGCATATCAAGTA
1 AAATGTTGTGACACGCCATGCAT-TCAAGTA
*
26257180 AAATGTTGTCACACGCCA
1 AAATGTTGTGACACGCCA
26257198 ATAACTAACT
Statistics
Matches: 183, Mismatches: 20, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
31 183 1.00
ACGTcount: A:0.37, C:0.23, G:0.18, T:0.23
Consensus pattern (30 bp):
AAATGTTGTGACACGCCATGCATTCAAGTA
Found at i:26257044 original size:62 final size:62
Alignment explanation
Indices: 26256963--26257197 Score: 310
Period size: 62 Copynumber: 3.8 Consensus size: 62
26256953 AATAAGGAAT
* ** * *
26256963 AAATATTGTGACACGCCATGCATTGCAAGCAAAATGTTGTGACACGCCATGCATTAT-AAGTA
1 AAATACTGTGACACGCCATGCATAACAAGTAAAACGTTGTGACACGCCATGCA-TATCAAGTA
** *
26257025 AAATGTTGTGACACGCCATGCATAACAAGTTAAACGTTGTGACACGCCATGCATATCAAGTA
1 AAATACTGTGACACGCCATGCATAACAAGTAAAACGTTGTGACACGCCATGCATATCAAGTA
* *
26257087 AAACACTGTGACACGCCATGCATAACAAGTAAAACGCTGTGACACGCCATGCATATCAAGTA
1 AAATACTGTGACACGCCATGCATAACAAGTAAAACGTTGTGACACGCCATGCATATCAAGTA
* * * * * *
26257149 AAATGCTATCACACGCCATGCATATCAAGTAAAATGTTGTCACACGCCA
1 AAATACTGTGACACGCCATGCATAACAAGTAAAACGTTGTGACACGCCA
26257198 ATAACTAACT
Statistics
Matches: 153, Mismatches: 19, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
61 3 0.02
62 150 0.98
ACGTcount: A:0.37, C:0.23, G:0.18, T:0.23
Consensus pattern (62 bp):
AAATACTGTGACACGCCATGCATAACAAGTAAAACGTTGTGACACGCCATGCATATCAAGTA
Found at i:26257194 original size:93 final size:93
Alignment explanation
Indices: 26256973--26257197 Score: 299
Period size: 93 Copynumber: 2.4 Consensus size: 93
26256963 AAATATTGTG
* * * * *
26256973 ACACGCCATGCAT-TGCAAGCAAAATGTTGTGACACGCCATGCATTATAAGTAAAATGTTGTGAC
1 ACACGCCATGCATAT-CAAGTAAAATGTTGTGACACGCCATGCATAACAAGTAAAACGCTGTGAC
* * * *
26257037 ACGCCATGCATAACAAGTTAAACGTTGTG
65 ACGCCATGCATAACAAGTAAAACGCTATC
***
26257066 ACACGCCATGCATATCAAGTAAAACACTGTGACACGCCATGCATAACAAGTAAAACGCTGTGACA
1 ACACGCCATGCATATCAAGTAAAATGTTGTGACACGCCATGCATAACAAGTAAAACGCTGTGACA
* *
26257131 CGCCATGCATATCAAGTAAAATGCTATC
66 CGCCATGCATAACAAGTAAAACGCTATC
*
26257159 ACACGCCATGCATATCAAGTAAAATGTTGTCACACGCCA
1 ACACGCCATGCATATCAAGTAAAATGTTGTGACACGCCA
26257198 ATAACTAACT
Statistics
Matches: 113, Mismatches: 18, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
93 112 0.99
94 1 0.01
ACGTcount: A:0.36, C:0.24, G:0.18, T:0.22
Consensus pattern (93 bp):
ACACGCCATGCATATCAAGTAAAATGTTGTGACACGCCATGCATAACAAGTAAAACGCTGTGACA
CGCCATGCATAACAAGTAAAACGCTATC
Found at i:26257784 original size:47 final size:47
Alignment explanation
Indices: 26257715--26258066 Score: 400
Period size: 47 Copynumber: 7.5 Consensus size: 47
26257705 TAAACCATGA
* * *
26257715 CCATGGTGTGTCACCAACTCTGAACTCTGGCATGTCATAGCTTCCCT
1 CCATGGCGTGTCACCAACTCTGAACTCTGGCATGTCACAGATTCCCT
* * *
26257762 CCATGGCATGTCACCAACTCTGAACTCTGGCATGTCACAGTTTCCTT
1 CCATGGCGTGTCACCAACTCTGAACTCTGGCATGTCACAGATTCCCT
* * ** * ** *
26257809 CCATGGCATCTCACCAACTCTGAAAGCTAGTGTGTCACAGATTTCCT
1 CCATGGCGTGTCACCAACTCTGAACTCTGGCATGTCACAGATTCCCT
* * * * *
26257856 CCATGCCATGTCACCAACTCTTAACTCTAGCGTGTCACAGATTCCCT
1 CCATGGCGTGTCACCAACTCTGAACTCTGGCATGTCACAGATTCCCT
* * * **
26257903 CCATGGCGTCTCACCAACTCTGAACTCTGACGTGTCACAGATTCGTT
1 CCATGGCGTGTCACCAACTCTGAACTCTGGCATGTCACAGATTCCCT
* * * *
26257950 CCATGGCGTTTCACCAACTCTGAACGCTGCCATGTCACAGAATT-CCA
1 CCATGGCGTGTCACCAACTCTGAACTCTGGCATGTCACAG-ATTCCCT
* *
26257997 CCATGGCGTGTCACCAACTCTTAACTCTGGCATCTCACAGATTCCCT
1 CCATGGCGTGTCACCAACTCTGAACTCTGGCATGTCACAGATTCCCT
* *
26258044 CCATGACGTCTCACCAACTCTGA
1 CCATGGCGTGTCACCAACTCTGA
26258067 GCGGTGTCGT
Statistics
Matches: 258, Mismatches: 45, Indels: 4
0.84 0.15 0.01
Matches are distributed among these distances:
46 3 0.01
47 252 0.98
48 3 0.01
ACGTcount: A:0.23, C:0.34, G:0.16, T:0.27
Consensus pattern (47 bp):
CCATGGCGTGTCACCAACTCTGAACTCTGGCATGTCACAGATTCCCT
Found at i:26257797 original size:24 final size:24
Alignment explanation
Indices: 26257723--26257799 Score: 79
Period size: 24 Copynumber: 3.2 Consensus size: 24
26257713 GACCATGGTG
26257723 TGTCACCAACTCTGAACTCTGGCA
1 TGTCACCAACTCTGAACTCTGGCA
* * **
26257747 TGTCA-TAGCT-T-CCCTCCATGGCA
1 TGTCACCAACTCTGAACT-C-TGGCA
26257770 TGTCACCAACTCTGAACTCTGGCA
1 TGTCACCAACTCTGAACTCTGGCA
26257794 TGTCAC
1 TGTCAC
26257800 AGTTTCCTTC
Statistics
Matches: 40, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
21 2 0.05
22 2 0.05
23 13 0.32
24 19 0.47
25 2 0.05
26 2 0.05
ACGTcount: A:0.22, C:0.34, G:0.17, T:0.27
Consensus pattern (24 bp):
TGTCACCAACTCTGAACTCTGGCA
Found at i:26258101 original size:141 final size:141
Alignment explanation
Indices: 26257714--26258111 Score: 483
Period size: 141 Copynumber: 2.8 Consensus size: 141
26257704 CTAAACCATG
* * * * * *
26257714 ACCATGGTGTGTCACCAACTCTGAACTCTGGCATGTCATAGCTTCCCTCCATGGCATGTCACCAA
1 ACCATGGCGTGTCACCAACTCTTAACTCTGGCATGTCACAGATTCCCTCCATGGCGTCTCACCAA
* * * * * **
26257779 CTCTGAACTCTGGCATGTCACAGTTTCCTTCCATGGCATCTCACCAACTCTGAAAGCTAGTGTGT
66 CTCTGAACTCTGACGTGTCACAGATTCCTTCCATGGCGTTTCACCAACTCTGAAAGCTAGCATGT
*
26257844 CACAGATTTCC
131 CACAGAATTCC
* * * * *
26257855 TCCATGCCATGTCACCAACTCTTAACTCTAGCGTGTCACAGATTCCCTCCATGGCGTCTCACCAA
1 ACCATGGCGTGTCACCAACTCTTAACTCTGGCATGTCACAGATTCCCTCCATGGCGTCTCACCAA
* *
26257920 CTCTGAACTCTGACGTGTCACAGATTCGTTCCATGGCGTTTCACCAACTCTGAACGCT-GCCATG
66 CTCTGAACTCTGACGTGTCACAGATTCCTTCCATGGCGTTTCACCAACTCTGAAAGCTAG-CATG
26257984 TCACAGAATTCC
130 TCACAGAATTCC
* *
26257996 ACCATGGCGTGTCACCAACTCTTAACTCTGGCATCTCACAGATTCCCTCCATGACGTCTCACCAA
1 ACCATGGCGTGTCACCAACTCTTAACTCTGGCATGTCACAGATTCCCTCCATGGCGTCTCACCAA
* ** * * *** * *
26258061 CTCTGAGCGGTGTCGTGTCACACATTCCCAACATGACGTTTCACAAACTCT
66 CTCTGAACTCTGACGTGTCACAGATTCCTTCCATGGCGTTTCACCAACTCT
26258112 AAACCTTGCC
Statistics
Matches: 217, Mismatches: 39, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
140 1 0.00
141 216 1.00
ACGTcount: A:0.23, C:0.33, G:0.17, T:0.27
Consensus pattern (141 bp):
ACCATGGCGTGTCACCAACTCTTAACTCTGGCATGTCACAGATTCCCTCCATGGCGTCTCACCAA
CTCTGAACTCTGACGTGTCACAGATTCCTTCCATGGCGTTTCACCAACTCTGAAAGCTAGCATGT
CACAGAATTCC
Found at i:26261088 original size:21 final size:21
Alignment explanation
Indices: 26261058--26261097 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
26261048 AATATATAAC
26261058 ATTAACGTTATGTAAATTAAT
1 ATTAACGTTATGTAAATTAAT
* *
26261079 ATTAATGTTATGTATATTA
1 ATTAACGTTATGTAAATTA
26261098 CCTTTAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.40, C:0.03, G:0.10, T:0.47
Consensus pattern (21 bp):
ATTAACGTTATGTAAATTAAT
Found at i:26264501 original size:202 final size:202
Alignment explanation
Indices: 26264155--26264560 Score: 742
Period size: 202 Copynumber: 2.0 Consensus size: 202
26264145 CCAATACTCC
*
26264155 TTTCTACCTTCCCAACTTTCTAATAATGTGTTAGAATTAATATATATTTTATTGCCATTTGGATA
1 TTTCTACCTTCCCAACTTTCTAATAATGTGTTAGAATTAATATATATTTTATTACCATTTGGATA
*
26264220 GATATAAAGATATATTTTTGCTATATTTTGCACTACATTTAATCAATAAAAGCTTTTTTATCTAT
66 GATATAAAGATATATTTTTGCTATATTTTCCACTACATTTAATCAATAAAAGCTTTTTTATCTAT
*
26264285 CCATTTATATATAATTGTTGTTATTTACTATTAAGATAAAGTCCACGGAATAAATGTGCTTTGCA
131 CCATTTATATATAATTGTTGTTATTTACTATTAAAATAAAGTCCACGGAATAAATGTGCTTTGCA
*
26264350 AAAGGAA
196 AAAAGAA
26264357 TTTCTACCTTCCCAACTTTCTAATAATGTGTTAGAATTAATATATATTTTATTACCATTTGGATA
1 TTTCTACCTTCCCAACTTTCTAATAATGTGTTAGAATTAATATATATTTTATTACCATTTGGATA
*
26264422 GATATAAAGATATATTTTTGTTATATTTTCCACTACATTTAATCAAT-AAAGTCTTTTTTATCTA
66 GATATAAAGATATATTTTTGCTATATTTTCCACTACATTTAATCAATAAAAG-CTTTTTTATCTA
*
26264486 TGCATTTATATATAATTGTTGTTATTTACTATTAAAATAAAGTCCACGGAATAAATGTGCTTTGC
130 TCCATTTATATATAATTGTTGTTATTTACTATTAAAATAAAGTCCACGGAATAAATGTGCTTTGC
26264551 AAAAAGAA
195 AAAAAGAA
26264559 TT
1 TT
26264561 ATAAAGTGCT
Statistics
Matches: 197, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
201 4 0.02
202 193 0.98
ACGTcount: A:0.34, C:0.12, G:0.10, T:0.43
Consensus pattern (202 bp):
TTTCTACCTTCCCAACTTTCTAATAATGTGTTAGAATTAATATATATTTTATTACCATTTGGATA
GATATAAAGATATATTTTTGCTATATTTTCCACTACATTTAATCAATAAAAGCTTTTTTATCTAT
CCATTTATATATAATTGTTGTTATTTACTATTAAAATAAAGTCCACGGAATAAATGTGCTTTGCA
AAAAGAA
Found at i:26290070 original size:20 final size:18
Alignment explanation
Indices: 26290028--26290072 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
26290018 GAGAGCTCAC
*
26290028 AGAGAAAAACCCTAAGAG
1 AGAGAAAAACACTAAGAG
26290046 AGAGAAAAACAACTATAGAG
1 AGAGAAAAAC-ACTA-AGAG
*
26290066 TGAGAAA
1 AGAGAAA
26290073 CAGAGACCGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 10 0.43
19 3 0.13
20 10 0.43
ACGTcount: A:0.58, C:0.11, G:0.22, T:0.09
Consensus pattern (18 bp):
AGAGAAAAACACTAAGAG
Found at i:26314403 original size:13 final size:13
Alignment explanation
Indices: 26314385--26314409 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26314375 AGGGAAATTG
26314385 TGATTTTATAAAA
1 TGATTTTATAAAA
26314398 TGATTTTATAAA
1 TGATTTTATAAA
26314410 TTTTCTGAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TGATTTTATAAAA
Found at i:26320057 original size:28 final size:28
Alignment explanation
Indices: 26319964--26320086 Score: 150
Period size: 28 Copynumber: 4.6 Consensus size: 28
26319954 AAACCTATTT
26319964 ATTTTTATTTTCTA-TTGGGCCATGCCC
1 ATTTTTATTTTCTATTTGGGCCATGCCC
* *
26319991 A--CTTATTTTCTA-TTGGGTCATGCCC
1 ATTTTTATTTTCTATTTGGGCCATGCCC
* *
26320016 A--TTTATTTTCTATTTGGGTCATGTCC
1 ATTTTTATTTTCTATTTGGGCCATGCCC
* *
26320042 ATTTTTATTTTCTATTTGAGCCATGCCT
1 ATTTTTATTTTCTATTTGGGCCATGCCC
26320070 ATTTTTATTTTCTATTT
1 ATTTTTATTTTCTATTT
26320087 CTTTTCTTTT
Statistics
Matches: 85, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
25 33 0.39
26 13 0.15
27 1 0.01
28 38 0.45
ACGTcount: A:0.16, C:0.18, G:0.12, T:0.54
Consensus pattern (28 bp):
ATTTTTATTTTCTATTTGGGCCATGCCC
Found at i:26320092 original size:5 final size:5
Alignment explanation
Indices: 26320072--26320116 Score: 56
Period size: 5 Copynumber: 8.8 Consensus size: 5
26320062 CCATGCCTAT
*
26320072 TTTTA TTTTC TATTTC TTTTC TTTTC TTTTC TGTTTC -TTTC TTTT
1 TTTTC TTTTC T-TTTC TTTTC TTTTC TTTTC T-TTTC TTTTC TTTT
26320117 TTCTCTCTTT
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
4 4 0.11
5 23 0.64
6 9 0.25
ACGTcount: A:0.04, C:0.16, G:0.02, T:0.78
Consensus pattern (5 bp):
TTTTC
Found at i:26320096 original size:21 final size:20
Alignment explanation
Indices: 26320072--26320116 Score: 63
Period size: 21 Copynumber: 2.2 Consensus size: 20
26320062 CCATGCCTAT
26320072 TTTTATTTTCTATTTCTTTTC
1 TTTTATTTTCTATTTC-TTTC
* *
26320093 TTTTCTTTTCTGTTTCTTTC
1 TTTTATTTTCTATTTCTTTC
26320113 TTTT
1 TTTT
26320117 TTCTCTCTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 8 0.36
21 14 0.64
ACGTcount: A:0.04, C:0.16, G:0.02, T:0.78
Consensus pattern (20 bp):
TTTTATTTTCTATTTCTTTC
Found at i:26320112 original size:15 final size:15
Alignment explanation
Indices: 26320072--26320116 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 15
26320062 CCATGCCTAT
*
26320072 TTTTATTTTCTATTTC
1 TTTTCTTTTCT-TTTC
26320088 TTTTCTTTTCTTTTC
1 TTTTCTTTTCTTTTC
26320103 TGTTTC-TTTCTTTT
1 T-TTTCTTTTCTTTT
26320117 TTCTCTCTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
15 13 0.48
16 14 0.52
ACGTcount: A:0.04, C:0.16, G:0.02, T:0.78
Consensus pattern (15 bp):
TTTTCTTTTCTTTTC
Found at i:26320167 original size:22 final size:22
Alignment explanation
Indices: 26320139--26320186 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
26320129 CCGTCACTCC
*
26320139 CTTCACCACCATGTCTTCCTCT
1 CTTCACCACCATGGCTTCCTCT
*
26320161 CTTCACCACCGTGGCTTCCTCT
1 CTTCACCACCATGGCTTCCTCT
26320183 CTTC
1 CTTC
26320187 CTTGGGTCGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.10, C:0.46, G:0.08, T:0.35
Consensus pattern (22 bp):
CTTCACCACCATGGCTTCCTCT
Found at i:26320349 original size:23 final size:23
Alignment explanation
Indices: 26320323--26320466 Score: 216
Period size: 23 Copynumber: 6.2 Consensus size: 23
26320313 AAATTGGCAG
26320323 CAAACAGCTCCAATTTTTCTGCA
1 CAAACAGCTCCAATTTTTCTGCA
*
26320346 CAAACAGCTCCAATTTTTCTGTA
1 CAAACAGCTCCAATTTTTCTGCA
* *
26320369 GCAAACAACTCTAATTTTTCTGCA
1 -CAAACAGCTCCAATTTTTCTGCA
*
26320393 CAAACAGCTCCAATTTTTTTGCA
1 CAAACAGCTCCAATTTTTCTGCA
* *
26320416 GCAAACAACTCTAATTTTTCTGCA
1 -CAAACAGCTCCAATTTTTCTGCA
26320440 CAAACAGCTCCAATTTTTCTGCA
1 CAAACAGCTCCAATTTTTCTGCA
26320463 CAAA
1 CAAA
26320467 TTGGCAGCAA
Statistics
Matches: 107, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
23 67 0.63
24 40 0.37
ACGTcount: A:0.33, C:0.27, G:0.08, T:0.32
Consensus pattern (23 bp):
CAAACAGCTCCAATTTTTCTGCA
Found at i:26320390 original size:47 final size:47
Alignment explanation
Indices: 26320319--26320466 Score: 253
Period size: 47 Copynumber: 3.2 Consensus size: 47
26320309 ACACAAATTG
* *
26320319 GCAGCAAACAGCTCCAATTTTTCTGCACAAACAGCTCCAATTTTTCT
1 GCAGCAAACAACTCTAATTTTTCTGCACAAACAGCTCCAATTTTTCT
* *
26320366 GTAGCAAACAACTCTAATTTTTCTGCACAAACAGCTCCAATTTTTTT
1 GCAGCAAACAACTCTAATTTTTCTGCACAAACAGCTCCAATTTTTCT
26320413 GCAGCAAACAACTCTAATTTTTCTGCACAAACAGCTCCAATTTTTCT
1 GCAGCAAACAACTCTAATTTTTCTGCACAAACAGCTCCAATTTTTCT
26320460 GCA-CAAA
1 GCAGCAAA
26320467 TTGGCAGCAA
Statistics
Matches: 95, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
46 4 0.04
47 91 0.96
ACGTcount: A:0.32, C:0.27, G:0.09, T:0.31
Consensus pattern (47 bp):
GCAGCAAACAACTCTAATTTTTCTGCACAAACAGCTCCAATTTTTCT
Found at i:26320409 original size:70 final size:70
Alignment explanation
Indices: 26320323--26320466 Score: 218
Period size: 70 Copynumber: 2.1 Consensus size: 70
26320313 AAATTGGCAG
* * *
26320323 CAAACAGCTCCAATTTTTCTGCA-CAAACAGCTCCAATTTTTCTGTAGCAAACAACTCTAATTTT
1 CAAACAGCTCCAATTTTTCTGCAGCAAACAACTCCAATTTTTCTGCA-CAAACAACTCCAATTTT
26320387 TCTGCA
65 TCTGCA
* * *
26320393 CAAACAGCTCCAATTTTTTTGCAGCAAACAACTCTAATTTTTCTGCACAAACAGCTCCAATTTTT
1 CAAACAGCTCCAATTTTTCTGCAGCAAACAACTCCAATTTTTCTGCACAAACAACTCCAATTTTT
26320458 CTGCA
66 CTGCA
26320463 CAAA
1 CAAA
26320467 TTGGCAGCAA
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
70 47 0.70
71 20 0.30
ACGTcount: A:0.33, C:0.27, G:0.08, T:0.32
Consensus pattern (70 bp):
CAAACAGCTCCAATTTTTCTGCAGCAAACAACTCCAATTTTTCTGCACAAACAACTCCAATTTTT
CTGCA
Found at i:26320524 original size:35 final size:34
Alignment explanation
Indices: 26320440--26320544 Score: 183
Period size: 34 Copynumber: 3.1 Consensus size: 34
26320430 TTTTTCTGCA
* *
26320440 CAAACAGCTCCAATTTTTCTGCACAAATTGGCAG
1 CAAATAGCTCCAATTTTTTTGCACAAATTGGCAG
26320474 CAAATAGCTCCAATTTTTTTGCACAAATTGGCAG
1 CAAATAGCTCCAATTTTTTTGCACAAATTGGCAG
26320508 CAAATAGCTCCAAATTTTTTTGCACAAATTGGCAG
1 CAAATAGCTCC-AATTTTTTTGCACAAATTGGCAG
26320543 CA
1 CA
26320545 CTTTGCTGCC
Statistics
Matches: 68, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
34 43 0.63
35 25 0.37
ACGTcount: A:0.33, C:0.23, G:0.14, T:0.30
Consensus pattern (34 bp):
CAAATAGCTCCAATTTTTTTGCACAAATTGGCAG
Found at i:26320726 original size:24 final size:26
Alignment explanation
Indices: 26320692--26320739 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
26320682 AAAAATCAGC
*
26320692 TTTCTTACCT-CAAAAATTTCAGCTT
1 TTTCTTACCTCCAAAAATTGCAGCTT
26320717 TTTCTT-CCTCCAAAAATTGCAGC
1 TTTCTTACCTCCAAAAATTGCAGC
26320740 AAAAAGCTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 3 0.14
25 18 0.86
ACGTcount: A:0.27, C:0.27, G:0.06, T:0.40
Consensus pattern (26 bp):
TTTCTTACCTCCAAAAATTGCAGCTT
Found at i:26322978 original size:74 final size:74
Alignment explanation
Indices: 26322900--26323097 Score: 258
Period size: 74 Copynumber: 2.7 Consensus size: 74
26322890 CAAACTGTGT
* *
26322900 GCTCTTAGTTGACTGACTATACTTCTTAGTCGATTAAGTCTTCTTTGTCTTGAAATTGA-ATTCT
1 GCTCTTAGTTGACTAACTATGCTTCTTAGTCGATTAAGTCTTCTTTGTCTTGAAATTGAGATT-T
26322964 CTGGCAGTGA
65 CTGGCAGTGA
* * * *
26322974 GCTCTTAGTTGACTTACCATGCTTTTTAGTCGATTAAGT-TCTCTTTGTCTTGTAATTGAGATTT
1 GCTCTTAGTTGACTAACTATGCTTCTTAGTCGATTAAGTCT-TCTTTGTCTTGAAATTGAGATTT
*
26323038 CTGGCAGTGT
65 CTGGCAGTGA
* * *
26323048 GCTCTTAGTTGACTAACCT-TGCTTCTTGGTCGACTAAGTCTTCTCTGTCT
1 GCTCTTAGTTGACTAA-CTATGCTTCTTAGTCGATTAAGTCTTCTTTGTCT
26323098 CACAATCTGC
Statistics
Matches: 108, Mismatches: 12, Indels: 8
0.84 0.09 0.06
Matches are distributed among these distances:
73 1 0.01
74 102 0.94
75 5 0.05
ACGTcount: A:0.18, C:0.19, G:0.19, T:0.43
Consensus pattern (74 bp):
GCTCTTAGTTGACTAACTATGCTTCTTAGTCGATTAAGTCTTCTTTGTCTTGAAATTGAGATTTC
TGGCAGTGA
Found at i:26330268 original size:73 final size:73
Alignment explanation
Indices: 26330108--26330311 Score: 268
Period size: 73 Copynumber: 2.8 Consensus size: 73
26330098 AAATTTTCAA
* **
26330108 ACAGTGTGCTCTTAGTTTACTAACTATGCTTCTTAGTTTATTAAGTCTTCTCTGTCTTGAAATTG
1 ACAGTGTGCTCTTAGTTGACTAAC-ATGCTTCTTAGTCGATTAAGTCTTCTCTGTCTTGAAATTG
26330173 AATTCTCTG
65 AATTCTCTG
* * * * * *
26330182 GCTGTGAGCTCTTAGTTGACTTAACATGCTTCTTAGTCGATT-AGTTTTTTCTGTCTTGTAATTG
1 ACAGTGTGCTCTTAGTTGAC-TAACATGCTTCTTAGTCGATTAAGTCTTCTCTGTCTTGAAATTG
26330246 AGATT-TCTG
65 A-ATTCTCTG
*
26330255 ACAGTGTGCTCTTAGTTGACTAACCATGCTTCTTGGTCGATTAAGTCTTCTCTGTCT
1 ACAGTGTGCTCTTAGTTGACTAA-CATGCTTCTTAGTCGATTAAGTCTTCTCTGTCT
26330312 CATAATCTGC
Statistics
Matches: 111, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
72 3 0.03
73 58 0.52
74 46 0.41
75 4 0.04
ACGTcount: A:0.19, C:0.18, G:0.18, T:0.45
Consensus pattern (73 bp):
ACAGTGTGCTCTTAGTTGACTAACATGCTTCTTAGTCGATTAAGTCTTCTCTGTCTTGAAATTGA
ATTCTCTG
Found at i:26331918 original size:102 final size:102
Alignment explanation
Indices: 26331736--26331942 Score: 290
Period size: 102 Copynumber: 2.0 Consensus size: 102
26331726 TTAGAGAATT
* *
26331736 ATACTCATTGAAACCAGTTCATGCATTGTAATTTCCTATACGAAAATGGTTATTAGCTTATAAAT
1 ATACTCATGGAAACCAGTTCATGCATTGTAATTTCCTATACGAAAATGATTATTAGCTTATAAAT
* * *
26331801 TGTTTATTTAGTAATAATTGAAAGGCTAAACACGCAA
66 TGTTTATTCAATAATAACTGAAAGGCTAAACACGCAA
* * * *
26331838 ATACTCATGGAAACTAGTTCATGCATTGTAATTTCTTATAC-AAGAATGATTATTAGCTTGTATA
1 ATACTCATGGAAACCAGTTCATGCATTGTAATTTCCTATACGAA-AATGATTATTAGCTTATAAA
* * *
26331902 TTGTTTATTCAATAATAACTGCAAGGCTAAATATGCAA
65 TTGTTTATTCAATAATAACTGAAAGGCTAAACACGCAA
26331940 ATA
1 ATA
26331943 AGTCCCCGAC
Statistics
Matches: 92, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
101 2 0.02
102 90 0.98
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.36
Consensus pattern (102 bp):
ATACTCATGGAAACCAGTTCATGCATTGTAATTTCCTATACGAAAATGATTATTAGCTTATAAAT
TGTTTATTCAATAATAACTGAAAGGCTAAACACGCAA
Found at i:26332253 original size:27 final size:27
Alignment explanation
Indices: 26332211--26332272 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
26332201 TTTAAATGTC
* * *
26332211 CAAAAAAAATTGGTTAGGGATTTGAAA
1 CAAAAAATATTAGTTAAGGATTTGAAA
*
26332238 CAAAAAATATTAGTTAAGGATTTGAAG
1 CAAAAAATATTAGTTAAGGATTTGAAA
26332265 CAAAAAAT
1 CAAAAAAT
26332273 TTGAAAATAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.52, C:0.05, G:0.18, T:0.26
Consensus pattern (27 bp):
CAAAAAATATTAGTTAAGGATTTGAAA
Found at i:26346424 original size:35 final size:35
Alignment explanation
Indices: 26346373--26346459 Score: 129
Period size: 35 Copynumber: 2.4 Consensus size: 35
26346363 CCATGTGGGA
* *
26346373 TTATTACAATTTCTAAATAAACTAAAACTCTTATT
1 TTATTATAATTCCTAAATAAACTAAAACTCTTATT
*
26346408 TTATTATAATTCCTAAATAAATTAAAACTCTTATT
1 TTATTATAATTCCTAAATAAACTAAAACTCTTATT
26346443 TTATCCTATAATTCCTA
1 TTAT--TATAATTCCTA
26346460 TGTGGGACCT
Statistics
Matches: 47, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
35 36 0.77
37 11 0.23
ACGTcount: A:0.40, C:0.15, G:0.00, T:0.45
Consensus pattern (35 bp):
TTATTATAATTCCTAAATAAACTAAAACTCTTATT
Found at i:26347176 original size:19 final size:20
Alignment explanation
Indices: 26347149--26347194 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
26347139 AGGAGACAAG
*
26347149 ATAAAATTTTTA-GAATAAA
1 ATAATATTTTTATGAATAAA
*
26347168 ATAATA-TTTTATTAATAAA
1 ATAATATTTTTATGAATAAA
26347187 ATAATATT
1 ATAATATT
26347195 AAAATATTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 5 0.22
19 17 0.74
20 1 0.04
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.43
Consensus pattern (20 bp):
ATAATATTTTTATGAATAAA
Found at i:26381155 original size:252 final size:248
Alignment explanation
Indices: 26380688--26381626 Score: 861
Period size: 252 Copynumber: 3.8 Consensus size: 248
26380678 TACCGGGTCG
* * * * * * *
26380688 TGAC-ATACTTGTTCCACCTTTATAATATTTTACGTTAATTTTTACAGCTTTACATCATAACTTT
1 TGACAATACTTGTTCTACATTTATAATGTTTTACATTAATTCTTACA-CTTTACGTCA-AAGTTT
* * ** * * *
26380752 TCAACTAAT-CATTTTTATGATAATTCTTTTTATCTTTACTATTATTCATGTAAACATTAAAATT
64 TCAACTACTAAATTTCAAT-ATAATTCTTTATATCTTTACTATTATTCATGCATA-ATTAAAATT
* * * *
26380816 TGTTAGCTCTAAAACACTTTAAATTTGAGAATAAAAATTTAGATGTTTAATTTTCTCAAAAATTA
127 TGTAAGCTCTAAAACACTTTAAACTCGAGAATAAAAATTTAAATGTTTAATTTTCT-AAAAATTA
* * * * *
26380881 TGTGTT-TTTTAAATATTTGACTTTTTACATTAAATCTCACACATTTACGTTAATATTT
191 TAT-TTATTTGAAATAATTGACTTGTTACATTAAATCTCACACATTTATGTTAATATTT
* *
26380939 TGAGAATACTTGTTCTACATTTGTAATGTTTTACATTAATTCTTACCACTTTACGTCAAGAGTTT
1 TGACAATACTTGTTCTACATTTATAATGTTTTACATTAATTCTTA-CACTTTACGTCAA-AGTTT
* *
26381004 TCAACTACTAAATTTCAATATAATTCTTTATATCTTTACTATTATTCTTGCATATGTTAAAAATT
64 TCAACTACTAAATTTCAATATAATTCTTTATATCTTTACTATTATTCATGCATA-ATT-AAAATT
* * * * *
26381069 T-TAAGCTGTAAAACACTTTAAACTTGATAATTAGAATTTAAATGTTTAATTTCTCTAAAAATTA
127 TGTAAGCTCTAAAACACTTTAAACTCGAGAATAAAAATTTAAATGTTTAATTT-TCTAAAAATTA
* * **
26381133 TATTTATTTGATATAATTGACTTGTTACGTTAAATCTCACTTATTTATGTTAATATTT
191 TATTTATTTGAAATAATTGACTTGTTACATTAAATCTCACACATTTATGTTAATATTT
* ** * *
26381191 TGATAATGA-TTGTTC--C-------A-GCGTT--A-TAA----T--GCTTTACGTCAATGTTTT
1 TGACAAT-ACTTGTTCTACATTTATAATGTTTTACATTAATTCTTACACTTTACGTCAAAG-TTT
* * * * * * *
26381236 TCAAATACTAATTTTCAGTACAATTCTTTTTATCCTTACTATTATTCATGAATAAATTAAAATTT
64 TCAACTACTAAATTTCAATATAATTCTTTATATCTTTACTATTATTCATGCAT-AATTAAAATTT
* ** * * * *
26381301 GTTATTTGTAAAACACTTTAAACTCAAGAAT-AAAATGTAAATGTTTAATTTTCCTGAAAATTAT
128 GTAAGCTCTAAAACACTTTAAACTCGAGAATAAAAATTTAAATGTTTAATTTT-CTAAAAATTAT
* * * * * *
26381365 ATTTCTTTGACATAATTGACTTGTTACATTAAATCACACACACTTATATCAATATTT
192 ATTTATTTGAAATAATTGACTTGTTACATTAAATCTCACACATTTATGTTAATATTT
* * * *
26381422 TGACAATACTTGTT-TCACTTTTATAATGTTTTACGTTAATTCTTAGCACTTTAAGTTAAAGTTT
1 TGACAATACTTGTTCT-ACATTTATAATGTTTTACATTAATTCTTA-CACTTTACGTCAAAG-TT
* * * *
26381486 TTTAACTACTAAATTTCAACATAATTCTTTATATTTTTACTATTATTCTTGCATAGATTAAAATT
63 TTCAACTACTAAATTTCAATATAATTCTTTATATCTTTACTATTATTCATGCATA-ATTAAAATT
* *
26381551 TGTAAG-TCCTAAAACATTTTAAACTCGAGAATAAAAATTTAAATGTTTAATTTTTCCAAAAATT
127 TGTAAGCT-CTAAAACACTTTAAACTCGAGAATAAAAATTTAAATGTTTAA-TTTTCTAAAAATT
26381615 ATATTTATTTGA
190 ATATTTATTTGA
26381627 CAAATTATAA
Statistics
Matches: 555, Mismatches: 95, Indels: 75
0.77 0.13 0.10
Matches are distributed among these distances:
230 2 0.00
231 95 0.17
232 85 0.15
233 2 0.00
235 1 0.00
239 3 0.01
240 2 0.00
241 3 0.01
242 3 0.01
243 1 0.00
244 3 0.01
248 1 0.00
250 3 0.01
251 96 0.17
252 232 0.42
253 23 0.04
ACGTcount: A:0.35, C:0.12, G:0.07, T:0.46
Consensus pattern (248 bp):
TGACAATACTTGTTCTACATTTATAATGTTTTACATTAATTCTTACACTTTACGTCAAAGTTTTC
AACTACTAAATTTCAATATAATTCTTTATATCTTTACTATTATTCATGCATAATTAAAATTTGTA
AGCTCTAAAACACTTTAAACTCGAGAATAAAAATTTAAATGTTTAATTTTCTAAAAATTATATTT
ATTTGAAATAATTGACTTGTTACATTAAATCTCACACATTTATGTTAATATTT
Found at i:26381421 original size:231 final size:232
Alignment explanation
Indices: 26380987--26381424 Score: 560
Period size: 231 Copynumber: 1.9 Consensus size: 232
26380977 ATTCTTACCA
* * * *
26380987 CTTTACGTCAAGAGTTTTCAACTACTAAATTTCAATATAATTCTTTATATCTTTACTATTATTCT
1 CTTTACGTCAAGAGTTTTCAAATACTAAATTTCAATACAATTCTTTATATCCTTACTATTATTCA
* ** ** * * *
26381052 TGCATATGTTAAAAATTTTAAGCTGTAAAACACTTTAAACTTGATAATTAGAATTTAAATGTTTA
66 TGAATAAATTAAAAATTTTAAGCTGTAAAACACTTTAAACTCAAGAATTAAAATGTAAATGTTTA
* * * ** * *
26381117 ATTTCTCTAAAAATTATATTTATTTGATATAATTGACTTGTTACGTTAAATCTCACTTATTTATG
131 ATTTCTCTAAAAATTATATTTATTTGACATAATTGACTTGTTACATTAAATCACACACACTTATA
*
26381182 TTAATATTTTGATAATGATTGTTCCAGCGTTATAATG
196 TCAATATTTTGATAATGATTGTTCCAGCGTTATAATG
* * * *
26381219 CTTTACGTCAATG-TTTTTCAAATACTAATTTTCAGTACAATTCTTTTTATCCTTACTATTATTC
1 CTTTACGTCAA-GAGTTTTCAAATACTAAATTTCAATACAATTCTTTATATCCTTACTATTATTC
* **
26381283 ATGAATAAATT-AAAATTTGTTATTTGTAAAACACTTTAAACTCAAGAA-TAAAATGTAAATGTT
65 ATGAATAAATTAAAAATTT-TAAGCTGTAAAACACTTTAAACTCAAGAATTAAAATGTAAATGTT
* *
26381346 TAATTT-TCCTGAAAATTATATTTCTTTGACATAATTGACTTGTTACATTAAATCACACACACTT
129 TAATTTCT-CTAAAAATTATATTTATTTGACATAATTGACTTGTTACATTAAATCACACACACTT
26381410 ATATCAATATTTTGA
193 ATATCAATATTTTGA
26381425 CAATACTTGT
Statistics
Matches: 174, Mismatches: 29, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
230 1 0.01
231 87 0.50
232 85 0.49
233 1 0.01
ACGTcount: A:0.35, C:0.12, G:0.08, T:0.45
Consensus pattern (232 bp):
CTTTACGTCAAGAGTTTTCAAATACTAAATTTCAATACAATTCTTTATATCCTTACTATTATTCA
TGAATAAATTAAAAATTTTAAGCTGTAAAACACTTTAAACTCAAGAATTAAAATGTAAATGTTTA
ATTTCTCTAAAAATTATATTTATTTGACATAATTGACTTGTTACATTAAATCACACACACTTATA
TCAATATTTTGATAATGATTGTTCCAGCGTTATAATG
Found at i:26385238 original size:251 final size:250
Alignment explanation
Indices: 26384743--26386886 Score: 1803
Period size: 252 Copynumber: 8.4 Consensus size: 250
26384733 GGGTTTGACA
* * * * *** * *
26384743 ATTATAAAGGTAAAACAAACATTATCAAAATATTGATAAAAATGTGCGAGATTTAATGTAACAAG
1 ATTATAAAGGTGAAACAAGCATTGTCAAAATGTTGACGTAAATGTGTGAGATTTAACGTAACAAG
* * * ** *
26384808 TCAATTATGTCAAAAAAATATAATTTTT-AGAATAATTAAACAGTTGCATTTTTATTCTTGAGTT
66 TCAATTATGTCAAATAAACATAATTTTTGAG-A-AATTAAACATTTAAATTGTTATTCTTGAGTT
* * * * * *
26384872 TAAAGTGTTTTACGAATGACAAATTTTAATTTATACTTGAATAATAGTAAGGATAAAAAGAATTA
129 TAAAATGTTTTACG-GTTACAAATTTTAATCTATGCATGAATAATAGTAAGGATAAAAAGAATTA
* * * * *
26384937 TGACGAAAGTTAGTAGTTGAAAAACCT-TGACATAAAGT-GTTAAGAATTAACATAAAAC
193 TGATGAAATTTAGTAGTTGAAAAA-CTATGACGTAAAATCG-TAAGAATTAACGTAAAAC
* * * * * *
26384995 ATTATAAAAGTGAAACAAGTATTGTCAAAATATTAACGTAAATATGTGAGATTTAACTTAACAAG
1 ATTATAAAGGTGAAACAAGCATTGTCAAAATGTTGACGTAAATGTGTGAGATTTAACGTAACAAG
*
26385060 TCAATTATGTCAAATAAACATAATTTTTGGAGAAATTAAACATTTAAATTGTTA-TCTCGAGTTT
66 TCAATTATGTCAAATAAACATAATTTTT-GAGAAATTAAACATTTAAATTGTTATTCTTGAGTTT
* * * * * * *
26385124 AAAATGTTATATGGCTTACAAATTTTAATCTATGGAAGAATAATGGTAAGCATATAAAGAATTAT
130 AAAATGTTTTACGG-TTACAAATTTTAATCTATGCATGAATAATAGTAAGGATAAAAAGAATTAT
* * * *
26385189 GTTGAAATTTAGTAGTTGAAAAACTATTACGTAAATTGGTAAGAATTAACGTAAAAC
194 GATGAAATTTAGTAGTTGAAAAACTATGACGTAAAATCGTAAGAATTAACGTAAAAC
* * * *
26385246 ATTATAAAGGT-AGAATAAGTATTGTCAAAATGTTGATGTAAATGTGTGAGATTTAATGTAACAA
1 ATTATAAAGGTGA-AACAAGCATTGTCAAAATGTTGACGTAAATGTGTGAGATTTAACGTAACAA
* * * *
26385310 GTCAATTATGTCAAAGAAACAT-ATTTTTCAAGAAAATTAAACATTTAAA-AGTTTATTTTTGAG
65 GTCAATTATGTCAAATAAACATAATTTTT-GAG-AAATTAAACATTTAAATTG-TTATTCTTGAG
* * * *
26385373 TTTAAAGTGTTTTACGGTTGACAAATTTTAATGTATGCTTGAATAATTGTAAGGATAAAAAGAAT
127 TTTAAAATGTTTTACGGTT-ACAAATTTTAATCTATGCATGAATAATAGTAAGGATAAAAAGAAT
* * * * * * *
26385438 TATAATTAAAATTATTAGTTAAAAAGTCATGACGTAAAGCTGTAAGAATTAATGTAAAACCATAA
191 TATGA-TGAAA-T-TTAG-T----AGT--TGA---AAAAC--T----A-TGACGTAAAATCGTAA
*
26385503 GAATTAATGTAAAAC
236 GAATTAACGTAAAAC
* * * * * *
26385518 ATTATATAGGTGGAATA-AAG-ATTGTTAAAGTATTGACATAAATATGTGAGATTTAACGTAACA
1 ATTATAAAGGT-GAA-ACAAGCATTGTCAAAATGTTGACGTAAATGTGTGAGATTTAACGTAACA
* * * *
26385581 AGTGAATTATGTCAAATAAACATAATTTTTCAGGAAATTAAACATCTAAATTATTATTCTTGAGT
64 AGTCAATTATGTCAAATAAACATAATTTTTGA-GAAATTAAACATTTAAATTGTTATTCTTGAGT
** * ** * *
26385646 TTAAAACATTTTACGGCTTATAAATTTTAATCTATGTGTGAATAATAATAATGATAAAAAGAATT
128 TTAAAATGTTTTACGG-TTACAAATTTTAATCTATGCATGAATAATAGTAAGGATAAAAAGAATT
* * * * ** ** *
26385711 ACGATGAAAATTATTAGTTGAATAGTTATGACGTAAAGCCGTAAGAATTAACGTAAAAT
192 ATGATGAAATTTAGTAGTTGAAAAACTATGACGTAAAATCGTAAGAATTAACGTAAAAC
* * ** * * * * *
26385770 ATTATAAAGGTGGAATAAATATTTTCAAAATATTGATGTAAATGTGTGAAATTTAACATAACAAG
1 ATTATAAAGGTGAAACAAGCATTGTCAAAATGTTGACGTAAATGTGTGAGATTTAACGTAACAAG
* * *
26385835 TCAATTATGTCAAATAAACATAATTTTTAGACAAATTAAACATTTAAATTGTTATTCTCGAATTT
66 TCAATTATGTCAAATAAACATAATTTTT-GAGAAATTAAACATTTAAATTGTTATTCTTGAGTTT
* * * * * * * * *
26385900 AAAGTATTTTACGGTTCATAAATTTTAATTTATGCAAGAATAATGGTAAAGA-AATAGAGAGTTA
130 AAAATGTTTTACGGTT-ACAAATTTTAATCTATGCATGAATAATAGTAAGGATAA-AAAGAATTA
* * * * ** *
26385964 TGTTGAAACTTAGTAGTTGAAAAATCT-TGACGTAAAATGGTAAAAATTAACACAAAAT
193 TGATGAAATTTAGTAGTTGAAAAA-CTATGACGTAAAATCGTAAGAATTAACGTAAAAC
* * * * *
26386022 ATTATACAGGTGGAATAAGCATTGTCAAAATGTTGACGTAAATGTGTGAGATTTAACATAATAAG
1 ATTATAAAGGTGAAACAAGCATTGTCAAAATGTTGACGTAAATGTGTGAGATTTAACGTAACAAG
* * *
26386087 TCAATTATGTCAAAGAAACATAATTTTCGAGAAAATTAAACATTTAAATTTTTATATTCTTGAGT
66 TCAATTATGTCAAATAAACATAATTTTTGAG-AAATTAAACATTTAAA-TTGT-TATTCTTGAGT
* * **
26386152 TTAAAATGTTTTAGGGTTGACAAATTTTAATGTATGTGTGAATAATAGTAAGGATAAAAAGAATT
128 TTAAAATGTTTTACGGTT-ACAAATTTTAATCTATGCATGAATAATAGTAAGGATAAAAAGAATT
* * * * * * * *
26386217 ATAATGAAAATTATTAGTTGAAAAGCCATGATGTAAAACCGTAAGAATTAATGTAAAAC
192 ATGATGAAATTTAGTAGTTGAAAAACTATGACGTAAAATCGTAAGAATTAACGTAAAAC
* * *
26386276 ATTATATAA-GTG---CACGCATTTTAAAAATGTTGACGTAAATGTGTGAGATTTAACGTAACAA
1 ATTATA-AAGGTGAAACAAGCATTGTCAAAATGTTGACGTAAATGTGTGAGATTTAACGTAACAA
* * * **
26386337 GTCAATTA-GTCTAATAAACATAATTTTTGAAGAAATTAAACTTTTAAATTGCTATTCTCAAGTT
65 GTCAATTATGTCAAATAAACATAATTTTTG-AGAAATTAAACATTTAAATTGTTATTCTTGAGTT
* * * *
26386401 TAAAGTGTTTTACGGTTTACAAATTTTAATCTATGCATGAATAATGGTAAGAATAAAAAAAATTA
129 TAAAATGTTTTACGG-TTACAAATTTTAATCTATGCATGAATAATAGTAAGGATAAAAAGAATTA
* ** * * * * *
26386466 T-AGTGAGAATTT-TTAGTAAAAAAACTTTGACGCAAAGTCATAAGAATTAACGTAAAAT
193 TGA-TGA-AATTTAGTAGTTGAAAAACTATGACGTAAAATCGTAAGAATTAACGTAAAAC
* * * * * * * *
26386524 ATTATAAAGATGGAGCAAGCATTATCAAAATGTTGATGTAAATATGTGATATTTAACGTAATAAG
1 ATTATAAAGGTGAAACAAGCATTGTCAAAATGTTGACGTAAATGTGTGAGATTTAACGTAACAAG
* * * *
26386589 TTAATTATGTCAAATAAACATAATTTTTGAGAAAATTAAATATTTAACTTTTTATTCTTGAGTTT
66 TCAATTATGTCAAATAAACATAATTTTTGAG-AAATTAAACATTTAAATTGTTATTCTTGAGTTT
* * * * * * *
26386654 AAAATATTTTATGGATTCCAAATTTTAATCTATGCATAAATAATAGCAAGGATAAAAGGCATTAT
130 AAAATGTTTTACGG-TTACAAATTTTAATCTATGCATGAATAATAGTAAGGATAAAAAGAATTAT
* * * * * *
26386719 GGA-GAAAATTAGTAGTTTAAAAATCT-TAACGTAAAA-CTATAAGAATTAATGTAAAAA
194 -GATGAAATTTAGTAGTTGAAAAA-CTATGACGTAAAATC-GTAAGAATTAACGTAAAAC
* * * ** * ** * * ** * *
26386776 ATTATAAAAGAGGAGTAAGCGTTGGAAAAATATTAATATAAATGTATGAGATTTATCGTAACAAG
1 ATTATAAAGGTGAAACAAGCATTGTCAAAATGTTGACGTAAATGTGTGAGATTTAACGTAACAAG
* * ** *
26386841 CCAATTAAGTCAAAATAAATTTAATTTTTTTTA-AAATTAAACATTT
66 TCAATTATGTC-AAATAAACATAA--TTTTTGAGAAATTAAACATTT
26386887 CATTTTTTGT
Statistics
Matches: 1532, Mismatches: 293, Indels: 133
0.78 0.15 0.07
Matches are distributed among these distances:
247 3 0.00
248 110 0.07
249 8 0.01
250 46 0.03
251 320 0.21
252 664 0.43
253 36 0.02
254 114 0.07
255 13 0.01
256 1 0.00
257 1 0.00
259 3 0.00
260 3 0.00
262 6 0.00
264 3 0.00
265 4 0.00
267 1 0.00
268 1 0.00
269 3 0.00
271 5 0.00
272 172 0.11
273 13 0.01
274 2 0.00
ACGTcount: A:0.44, C:0.07, G:0.14, T:0.35
Consensus pattern (250 bp):
ATTATAAAGGTGAAACAAGCATTGTCAAAATGTTGACGTAAATGTGTGAGATTTAACGTAACAAG
TCAATTATGTCAAATAAACATAATTTTTGAGAAATTAAACATTTAAATTGTTATTCTTGAGTTTA
AAATGTTTTACGGTTACAAATTTTAATCTATGCATGAATAATAGTAAGGATAAAAAGAATTATGA
TGAAATTTAGTAGTTGAAAAACTATGACGTAAAATCGTAAGAATTAACGTAAAAC
Found at i:26385503 original size:20 final size:20
Alignment explanation
Indices: 26385480--26385517 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
26385470 CGTAAAGCTG
26385480 TAAGAATTAATGTAAAACCA
1 TAAGAATTAATGTAAAACCA
26385500 TAAGAATTAATGTAAAAC
1 TAAGAATTAATGTAAAAC
26385518 ATTATATAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.55, C:0.08, G:0.11, T:0.26
Consensus pattern (20 bp):
TAAGAATTAATGTAAAACCA
Found at i:26385997 original size:524 final size:510
Alignment explanation
Indices: 26384767--26386980 Score: 1809
Period size: 524 Copynumber: 4.4 Consensus size: 510
26384757 ACAAACATTA
* ** * * * *
26384767 TCAAAATATTGATAAAAATGTGCGAGATTTAATGTAACAAGTCAATTATGTCAAAAAAATATAAT
1 TCAAAATGTTGATGTAAATGTGTGAGATTTAACGTAACAAGTCAATTATGTCAAATAAACATAAT
* ** * * * ** *
26384832 TTTTAGAATAATTAAACAGTTGCATTTTTATTCTTGAGTTTAAAGTGTTTTACGAATGACAAATT
66 TTTTAGAA-AATTAAACATTTAAATTGTTATTCTCGAATTTAAAGTGTTTTACGGTTCACAAATT
* * * * * * ** *
26384897 TTAATTTATACTTGAATAATAGTAAGGATAAAAAGAATTATGACGAAAGTTAGTAGTTGAAAAA-
130 TTAATCTATGCATGAATAATGGTAAAGATAAAAAGAATTATAATTAAAATTAGTAGTT-AAAAAG
* * * * * * * *
26384961 CCTTGACATAAAGTGTTAAGAATTAAC---------ATAAAACATTATAAAAGT-GAA-ACAAGT
194 TCATGACGTAAAATGGTAAAAATTAACTAAGAATTAATAAAACATTATAAAGGTGGAATA-AAGC
* *
26385015 ATTGTCAAAATATTAACGTAAATATGTGAGATTTAACTTAACAAGTCAATTATGTCAAATAAACA
258 ATTGTCAAAATATTGACGTAAATATGTGAGATTTAACATAACAAGTCAATTATGTCAAATAAACA
* * * *
26385080 TAATTTTT-GGAGAAATTAAACATTTAAATTGTTA-TCTCGAGTTTAAAATGTTATATGGCTTAC
323 TAATTTTTCAG-GAAATTAAACATTTAAATTATTATTCTTGAGTTTAAAATGTTTTA-GGCTTAC
* * * * * *
26385143 AAATTTTAATCTATG-GAAGAATAATGGTAAGCATATAAAGAATTATGTTGAAATTTAGTAGTTG
386 AAATTTTAATCTATGTG-TGAATAATAGTAAG-ATAAAAAGAATTATGATGAAAATTATTAGTTG
* * *** *
26385207 AAAAACTATTACGTAAATTGGTAAGAATTAACGTAAAACATTATAAAGGTAGAATAAGTATTG
449 AAAAGCTATGACGTAAAACCGTAAGAATTAACGTAAAACATTATAAAGGT-GAATAAGTATTT
* *
26385270 TCAAAATGTTGATGTAAATGTGTGAGATTTAATGTAACAAGTCAATTATGTCAAAGAAACAT-AT
1 TCAAAATGTTGATGTAAATGTGTGAGATTTAACGTAACAAGTCAATTATGTCAAATAAACATAAT
* * * * *
26385334 TTTTCAAGAAAATTAAACATTTAAA-AGTTTATTTTTGAGTTTAAAGTGTTTTACGGTTGACAAA
66 TTTT--AGAAAATTAAACATTTAAATTG-TTATTCTCGAATTTAAAGTGTTTTACGGTTCACAAA
* * * * *
26385398 TTTTAATGTATGCTTGAATAATTGTAAGGATAAAAAGAATTATAATTAAAATTATTAGTTAAAAA
128 TTTTAATCTATGCATGAATAATGGTAAAGATAAAAAGAATTATAATTAAAATTAGTAGTTAAAAA
* *
26385463 GTCATGACGTAAAGCT-GTAAGAATTAATGTAAAACCATAAGAATTAATGTAAAACATTATATAG
193 GTCATGACGTAAA-ATGGT-A-AA--AAT-T--AA-C-TAAGAATTAA--TAAAACATTATAAAG
* * * * *
26385527 GTGGAATAAAG-ATTGTTAAAGTATTGACATAAATATGTGAGATTTAACGTAACAAGTGAATTAT
246 GTGGAATAAAGCATTGTCAAAATATTGACGTAAATATGTGAGATTTAACATAACAAGTCAATTAT
* **
26385591 GTCAAATAAACATAATTTTTCAGGAAATTAAACATCTAAATTATTATTCTTGAGTTTAAAACATT
311 GTCAAATAAACATAATTTTTCAGGAAATTAAACATTTAAATTATTATTCTTGAGTTTAAAATGTT
* * *
26385656 TTACGGCTTATAAATTTTAATCTATGTGTGAATAATAATAATGATAAAAAGAATTACGATGAAAA
376 TTA-GGCTTACAAATTTTAATCTATGTGTGAATAATAGTAA-GATAAAAAGAATTATGATGAAAA
* * * *
26385721 TTATTAGTTGAATAGTTATGACGTAAAGCCGTAAGAATTAACGTAAAATATTATAAAGGTGGAAT
439 TTATTAGTTGAAAAGCTATGACGTAAAACCGTAAGAATTAACGTAAAACATTATAAAGGT-GAAT
*
26385786 AAATATTT
503 AAGTATTT
* * *
26385794 TCAAAATATTGATGTAAATGTGTGAAATTTAACATAACAAGTCAATTATGTCAAATAAACATAAT
1 TCAAAATGTTGATGTAAATGTGTGAGATTTAACGTAACAAGTCAATTATGTCAAATAAACATAAT
* *
26385859 TTTTAGACAAATTAAACATTTAAATTGTTATTCTCGAATTTAAAGTATTTTACGGTTCATAAATT
66 TTTTAGA-AAATTAAACATTTAAATTGTTATTCTCGAATTTAAAGTGTTTTACGGTTCACAAATT
* * * * * *
26385924 TTAATTTATGCAAGAATAATGGTAAAGA-AATAGAGAGTTAT-GTTGAAACTTAGTAGTTGAAAA
130 TTAATCTATGCATGAATAATGGTAAAGATAA-AAAGAATTATAATT-AAAATTAGTAGTT-AAAA
* * *
26385987 A-TCTTGACGTAAAATGGTAAAAATTAAC--ACAA--AAT-----ATTATACAGGTGGAAT-AAG
192 AGTCATGACGTAAAATGGTAAAAATTAACTAAGAATTAATAAAACATTATAAAGGTGGAATAAAG
* * * *
26386041 CATTGTCAAAATGTTGACGTAAATGTGTGAGATTTAACATAATAAGTCAATTATGTCAAAGAAAC
257 CATTGTCAAAATATTGACGTAAATATGTGAGATTTAACATAACAAGTCAATTATGTCAAATAAAC
* * *
26386106 ATAA-TTTTCGAGAAAATTAAACATTTAAATTTTTATATTCTTGAGTTTAAAATGTTTTAGGGTT
322 ATAATTTTTC-AGGAAATTAAACATTTAAA-TTAT-TATTCTTGAGTTTAAAATGTTTTAGGCTT
* *
26386170 GACAAATTTTAATGTATGTGTGAATAATAGTAAGGATAAAAAGAATTATAATGAAAATTATTAGT
384 -ACAAATTTTAATCTATGTGTGAATAATAGTAA-GATAAAAAGAATTATGATGAAAATTATTAGT
* * * * * *
26386235 TGAAAAGCCATGATGTAAAACCGTAAGAATTAATGTAAAACATTATATAA-GTG--CACGCATTT
447 TGAAAAGCTATGACGTAAAACCGTAAGAATTAACGTAAAACATTATA-AAGGTGAATAAGTATTT
* * *
26386297 TAAAAATGTTGACGTAAATGTGTGAGATTTAACGTAACAAGTCAATTA-GTCTAATAAACATAAT
1 TCAAAATGTTGATGTAAATGTGTGAGATTTAACGTAACAAGTCAATTATGTCAAATAAACATAAT
* * *
26386361 TTTT-GAAGAAATTAAACTTTTAAATTGCTATTCTC-AAGTTTAAAGTGTTTTACGGTTTACAAA
66 TTTTAG-A-AAATTAAACATTTAAATTGTTATTCTCGAA-TTTAAAGTGTTTTACGGTTCACAAA
* * * * **
26386424 TTTTAATCTATGCATGAATAATGGT-AAGAATAAAAAAAATTATAGTGAGAATTTTTAG-TAAAA
128 TTTTAATCTATGCATGAATAATGGTAAAG-ATAAAAAGAATTATAATTAAAATTAGTAGTTAAAA
** * * * ** * * * **
26386487 AAACTTTGACGCAAAGTCATAAGAATTAAC---G------TAAAATATTATAAAGATGG-AGCAA
192 AGTC-ATGACGTAAAATGGTAAAAATTAACTAAGAATTAATAAAACATTATAAAGGTGGAATAAA
* * * * * * *
26386542 GCATTATCAAAATGTTGATGTAAATATGTGATATTTAACGTAATAAGTTAATTATGTCAAATAAA
256 GCATTGTCAAAATATTGACGTAAATATGTGAGATTTAACATAACAAGTCAATTATGTCAAATAAA
* * * * * * * *
26386607 CATAATTTTTGAGAAAATTAAATATTTAACTTTTTATTCTTGAGTTTAAAATATTTTATGGATTC
321 CATAATTTTTCAGGAAATTAAACATTTAAATTATTATTCTTGAGTTTAAAATGTTTTA-GGCTTA
** * * * * *
26386672 CAAATTTTAATCTATGCATAAATAATAGCAAGGATAAAAGGCATTATGGA-GAAAATTAGTAGTT
385 CAAATTTTAATCTATGTGTGAATAATAGTAA-GATAAAAAGAATTAT-GATGAAAATTATTAG-T
* * * ** * * * **
26386736 TAAAAATCT-TAACGTAAAACTATAAGAATTAATGTAAAAAATTATAAAAGAG-GAGTAAGCGTT
447 TGAAAAGCTATGACGTAAAACCGTAAGAATTAACGTAAAACATTAT-AAAG-GTGAATAAGTATT
*
26386799 G
510 T
** * * * * * * * **
26386800 GAAAAATATTAATATAAATGTATGAGATTTATCGTAACAAGCCAATTAAGTCAAAATAAATTTAA
1 TCAAAATGTTGATGTAAATGTGTGAGATTTAACGTAACAAGTCAATTATGTC-AAATAAACATAA
** * * * * * * * * * * *
26386865 TTTTTTTTAAAATTAAACATTTCATTTTTTGTTATTGAATTAAAAGTATTTAACGGTTTATAAAT
65 -TTTTTAGAAAATTAAACATTTAAATTGTTATTCTCGAATTTAAAGTGTTTTACGGTTCACAAAT
* ** * ** * * *
26386930 TTTAATTTATAAATGAGTAATAATAAAAATAAAAATAATTATAGTTAAAAT
129 TTTAATCTATGCATGAATAATGGTAAAGATAAAAAGAATTATAATTAAAAT
26386981 ATTAATTTAT
Statistics
Matches: 1417, Mismatches: 222, Indels: 142
0.80 0.12 0.08
Matches are distributed among these distances:
497 1 0.00
500 112 0.08
501 27 0.02
502 230 0.16
503 272 0.19
504 100 0.07
505 97 0.07
506 132 0.09
507 5 0.00
508 1 0.00
509 1 0.00
510 2 0.00
511 3 0.00
513 3 0.00
516 1 0.00
517 2 0.00
519 1 0.00
520 3 0.00
521 1 0.00
522 2 0.00
523 112 0.08
524 294 0.21
525 15 0.01
ACGTcount: A:0.44, C:0.07, G:0.14, T:0.35
Consensus pattern (510 bp):
TCAAAATGTTGATGTAAATGTGTGAGATTTAACGTAACAAGTCAATTATGTCAAATAAACATAAT
TTTTAGAAAATTAAACATTTAAATTGTTATTCTCGAATTTAAAGTGTTTTACGGTTCACAAATTT
TAATCTATGCATGAATAATGGTAAAGATAAAAAGAATTATAATTAAAATTAGTAGTTAAAAAGTC
ATGACGTAAAATGGTAAAAATTAACTAAGAATTAATAAAACATTATAAAGGTGGAATAAAGCATT
GTCAAAATATTGACGTAAATATGTGAGATTTAACATAACAAGTCAATTATGTCAAATAAACATAA
TTTTTCAGGAAATTAAACATTTAAATTATTATTCTTGAGTTTAAAATGTTTTAGGCTTACAAATT
TTAATCTATGTGTGAATAATAGTAAGATAAAAAGAATTATGATGAAAATTATTAGTTGAAAAGCT
ATGACGTAAAACCGTAAGAATTAACGTAAAACATTATAAAGGTGAATAAGTATTT
Found at i:26394412 original size:2 final size:2
Alignment explanation
Indices: 26394405--26394429 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
26394395 GTAATATTGC
26394405 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
26394430 AAAGGGATGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:26398533 original size:35 final size:35
Alignment explanation
Indices: 26398494--26398585 Score: 139
Period size: 35 Copynumber: 2.6 Consensus size: 35
26398484 GAATCATGAG
* *
26398494 AACAACTCGAGTAAGTGAAGTACTATTTCATGCAA
1 AACAACTAGAATAAGTGAAGTACTATTTCATGCAA
*
26398529 AACAACTAGAATAAGTGAAGTACTATTTCATGCAG
1 AACAACTAGAATAAGTGAAGTACTATTTCATGCAA
* *
26398564 AACAAGTAGAATAAGTGGAGTA
1 AACAACTAGAATAAGTGAAGTA
26398586 TTACTCCATG
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 52 1.00
ACGTcount: A:0.43, C:0.13, G:0.20, T:0.24
Consensus pattern (35 bp):
AACAACTAGAATAAGTGAAGTACTATTTCATGCAA
Found at i:26398602 original size:35 final size:35
Alignment explanation
Indices: 26398488--26398606 Score: 123
Period size: 35 Copynumber: 3.4 Consensus size: 35
26398478 TACAGAGAAT
* * * *
26398488 CATG-AGAACAACTCGAGTAAGTGAAGTACTATTT
1 CATGCAGAACAACTAGAATAAGTGAAGTACTACTC
* * *
26398522 CATGCAAAACAACTAGAATAAGTGAAGTACTATTT
1 CATGCAGAACAACTAGAATAAGTGAAGTACTACTC
* * *
26398557 CATGCAGAACAAGTAGAATAAGTGGAGTATTACTC
1 CATGCAGAACAACTAGAATAAGTGAAGTACTACTC
**
26398592 CATGTGGAACAACTA
1 CATGCAGAACAACTA
26398607 ATACTATTAG
Statistics
Matches: 72, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
34 4 0.06
35 68 0.94
ACGTcount: A:0.41, C:0.15, G:0.19, T:0.24
Consensus pattern (35 bp):
CATGCAGAACAACTAGAATAAGTGAAGTACTACTC
Found at i:26400751 original size:98 final size:98
Alignment explanation
Indices: 26400576--26400759 Score: 237
Period size: 98 Copynumber: 1.9 Consensus size: 98
26400566 ATTCAGCTAC
* * * * *
26400576 TCGCTTTATCGCTTATACTTTGGCTGCAATTATATTATATTATTGGTTGCAAGCTTGATCCTTAA
1 TCGCTTTATCGCTCATACTTTGGCTGCAATGACATTATACTATTGGTCGCAAGCTTGATCCTTAA
** *
26400641 TTCTTTTTCCATAGTTCATCACTTTTATTTCAG
66 TTCTTTGACCATAATTCATCACTTTTATTTCAG
* *
26400674 TCGCTTTA-CTGCTCATACTTTGGCTGCAATGACATTATGCTATTGGTCGCAAGCTTTATCGC-T
1 TCGCTTTATC-GCTCATACTTTGGCTGCAATGACATTATACTATTGGTCGCAAGCTTGATC-CTT
*
26400737 CATTCTTTGACCATAATTCATCA
64 AATTCTTTGACCATAATTCATCA
26400760 TTCATATTTC
Statistics
Matches: 73, Mismatches: 11, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
97 1 0.01
98 71 0.97
99 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.14, T:0.43
Consensus pattern (98 bp):
TCGCTTTATCGCTCATACTTTGGCTGCAATGACATTATACTATTGGTCGCAAGCTTGATCCTTAA
TTCTTTGACCATAATTCATCACTTTTATTTCAG
Found at i:26401766 original size:17 final size:17
Alignment explanation
Indices: 26401744--26401781 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 17
26401734 TAAAAATGTG
26401744 AAAAATAATA-ATAATAA
1 AAAAATAATACA-AATAA
26401761 AAAAATAATACAAATAA
1 AAAAATAATACAAATAA
26401778 AAAA
1 AAAA
26401782 TTAGAAATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 19 0.95
18 1 0.05
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.18
Consensus pattern (17 bp):
AAAAATAATACAAATAA
Found at i:26407945 original size:21 final size:21
Alignment explanation
Indices: 26407891--26407992 Score: 98
Period size: 21 Copynumber: 4.9 Consensus size: 21
26407881 TATTGAGATC
**
26407891 GCCAAGTCTCTATA-CTTTGT
1 GCCAAGTCTCTATACCTTTAA
* * * **
26407911 GTCAGGTATCTATACCTTCGA
1 GCCAAGTCTCTATACCTTTAA
26407932 GCCAAGTCTCTATACCTTTAA
1 GCCAAGTCTCTATACCTTTAA
* *
26407953 GCCACGTCTCTATACCTTAAA
1 GCCAAGTCTCTATACCTTTAA
* *
26407974 GCCAAGTATATATACCTTT
1 GCCAAGTCTCTATACCTTT
26407993 GAACCACTTT
Statistics
Matches: 65, Mismatches: 16, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
20 11 0.17
21 54 0.83
ACGTcount: A:0.26, C:0.26, G:0.13, T:0.34
Consensus pattern (21 bp):
GCCAAGTCTCTATACCTTTAA
Found at i:26407977 original size:42 final size:42
Alignment explanation
Indices: 26407891--26407992 Score: 116
Period size: 42 Copynumber: 2.5 Consensus size: 42
26407881 TATTGAGATC
** * * **
26407891 GCCAAGTCTCTATA-CTTTGTGTCAGGTATCTATACCTTCGA
1 GCCAAGTCTCTATACCTTTAAGCCACGTATCTATACCTTAAA
*
26407932 GCCAAGTCTCTATACCTTTAAGCCACGTCTCTATACCTTAAA
1 GCCAAGTCTCTATACCTTTAAGCCACGTATCTATACCTTAAA
* *
26407974 GCCAAGTATATATACCTTT
1 GCCAAGTCTCTATACCTTT
26407993 GAACCACTTT
Statistics
Matches: 51, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
41 14 0.27
42 37 0.73
ACGTcount: A:0.26, C:0.26, G:0.13, T:0.34
Consensus pattern (42 bp):
GCCAAGTCTCTATACCTTTAAGCCACGTATCTATACCTTAAA
Found at i:26408094 original size:20 final size:21
Alignment explanation
Indices: 26408051--26408112 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 21
26408041 TGCAAGAGGG
*
26408051 GTTTAAAACTAATTTAAACAA
1 GTTTAAAACTAATTCAAACAA
*
26408072 GTTTAAAACT-ATTCAAGCAA
1 GTTTAAAACTAATTCAAACAA
* * *
26408092 GTTCAAAAATCATTCAAACAA
1 GTTTAAAACTAATTCAAACAA
26408113 TTTCAACACC
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
20 16 0.46
21 19 0.54
ACGTcount: A:0.50, C:0.15, G:0.06, T:0.29
Consensus pattern (21 bp):
GTTTAAAACTAATTCAAACAA
Found at i:26408117 original size:21 final size:20
Alignment explanation
Indices: 26408066--26408118 Score: 54
Period size: 21 Copynumber: 2.6 Consensus size: 20
26408056 AAACTAATTT
*
26408066 AAACAAGTTT-AAAACTATTC
1 AAACAA-TTTCAAAAATATTC
* *
26408086 AAGCAAGTTCAAAAATCATTC
1 AAACAATTTCAAAAAT-ATTC
26408107 AAACAATTTCAA
1 AAACAATTTCAA
26408119 CACCCATTCA
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
19 2 0.08
20 10 0.38
21 14 0.54
ACGTcount: A:0.51, C:0.17, G:0.06, T:0.26
Consensus pattern (20 bp):
AAACAATTTCAAAAATATTC
Found at i:26408260 original size:21 final size:21
Alignment explanation
Indices: 26408234--26408298 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 21
26408224 TCAAGTAATC
*
26408234 TTCAAAAATCATTCAAACAAT
1 TTCAAAGATCATTCAAACAAT
** *
26408255 TTCAAAGATTGTTCAAACAAG
1 TTCAAAGATCATTCAAACAAT
*
26408276 TTCGAAGATCATT-AAAGCAAT
1 TTCAAAGATCATTCAAA-CAAT
26408297 TT
1 TT
26408299 TGATAATTTT
Statistics
Matches: 35, Mismatches: 8, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
20 3 0.09
21 32 0.91
ACGTcount: A:0.45, C:0.15, G:0.09, T:0.31
Consensus pattern (21 bp):
TTCAAAGATCATTCAAACAAT
Found at i:26415915 original size:22 final size:21
Alignment explanation
Indices: 26415866--26415916 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
26415856 ACAGAAAGTT
* *
26415866 TCTCGCTACAGCGAGAATGAA
1 TCTCGCTGCAGCAAGAATGAA
*
26415887 TCTCGCTGCAGCAAGAATCGAC
1 TCTCGCTGCAGCAAGAAT-GAA
26415909 TCTCGCTG
1 TCTCGCTG
26415917 TAGCGAATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
21 16 0.62
22 10 0.38
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.22
Consensus pattern (21 bp):
TCTCGCTGCAGCAAGAATGAA
Found at i:26416231 original size:42 final size:42
Alignment explanation
Indices: 26416178--26416260 Score: 121
Period size: 42 Copynumber: 2.0 Consensus size: 42
26416168 CATCTCATAT
* * *
26416178 GCAATGGCTTATGCGCACTCCCATTCGCACATAGCCGGGTCA
1 GCAATGCCTTATGCGCACTCCCACTCGCACATAGACGGGTCA
* *
26416220 GCAATGCCTTATGTGCACTCCTACTCGCACATAGACGGGTC
1 GCAATGCCTTATGCGCACTCCCACTCGCACATAGACGGGTC
26416261 CACATCAACA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.22, C:0.33, G:0.23, T:0.23
Consensus pattern (42 bp):
GCAATGCCTTATGCGCACTCCCACTCGCACATAGACGGGTCA
Found at i:26424444 original size:20 final size:20
Alignment explanation
Indices: 26424419--26424464 Score: 67
Period size: 20 Copynumber: 2.3 Consensus size: 20
26424409 TTTTGACCCC
26424419 ATTTGACTTATT-AGAGTATA
1 ATTTGACTTATTGA-AGTATA
*
26424439 ATTTGACTTATTGAAGTATG
1 ATTTGACTTATTGAAGTATA
26424459 ATTTGA
1 ATTTGA
26424465 GGTTTAGAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 23 0.96
21 1 0.04
ACGTcount: A:0.33, C:0.04, G:0.17, T:0.46
Consensus pattern (20 bp):
ATTTGACTTATTGAAGTATA
Found at i:26424540 original size:28 final size:27
Alignment explanation
Indices: 26424509--26424561 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
26424499 TTTGGAGTAT
*
26424509 AGGGGTAAAATGGTAATTTTGCCACCTC
1 AGGGGCAAAATGGTAATTTT-CCACCTC
*
26424537 AGGGGCAAAATTGTAATTTTCCACC
1 AGGGGCAAAATGGTAATTTTCCACC
26424562 ACCAGGATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 5 0.22
28 18 0.78
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (27 bp):
AGGGGCAAAATGGTAATTTTCCACCTC
Found at i:26424567 original size:28 final size:28
Alignment explanation
Indices: 26424509--26424567 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
26424499 TTTGGAGTAT
* *
26424509 AGGGGTAAAATGGTAATTTTGCCACCTC
1 AGGGGCAAAATGGTAATTTTGCCACCCC
*
26424537 AGGGGCAAAATTGTAATTTT-CCACCACC
1 AGGGGCAAAATGGTAATTTTGCCACC-CC
26424565 AGG
1 AGG
26424568 ATATTTTTTC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 5 0.19
28 22 0.81
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (28 bp):
AGGGGCAAAATGGTAATTTTGCCACCCC
Found at i:26428791 original size:22 final size:22
Alignment explanation
Indices: 26428763--26428804 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
26428753 CTTACTAGTA
*
26428763 TTATC-TTAATTTAAGACAAATC
1 TTATCTTTAA-TTAAAACAAATC
26428785 TTATCTTTAATTAAAACAAA
1 TTATCTTTAATTAAAACAAA
26428805 AATATTTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.45, C:0.12, G:0.02, T:0.40
Consensus pattern (22 bp):
TTATCTTTAATTAAAACAAATC
Found at i:26428861 original size:57 final size:56
Alignment explanation
Indices: 26428793--26428983 Score: 231
Period size: 57 Copynumber: 3.3 Consensus size: 56
26428783 TCTTATCTTT
* *
26428793 AATTAAAACAAAAATATTTTATCTTGTCTAAATTGAGACAAATATGTTTCTTGTCTA
1 AATTAAGACAAAAATATTTT-TCTTGTCTAAATTAAGACAAATATGTTTCTTGTCTA
* *
26428850 GATTAAGACAAAAAATATTTTTCTTGTCTTAAATTAAGACAAATATATTTTCTTGTCTA
1 AATTAAGAC-AAAAATATTTTTCTTGTC-TAAATTAAGACAAATAT-GTTTCTTGTCTA
* * * * *
26428909 AATTAAGACAAACAT-GTTTTCTTGTCTAAATTAACACATAACATGTTTTCTTGTTTA
1 AATTAAGACAAAAATATTTTTCTTGTCTAAATTAAGACA-AATATG-TTTCTTGTCTA
*
26428966 AATTAAGACAAACATATT
1 AATTAAGACAAAAATATT
26428984 AAAGCTGTCA
Statistics
Matches: 116, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
56 11 0.09
57 53 0.46
58 33 0.28
59 19 0.16
ACGTcount: A:0.40, C:0.12, G:0.08, T:0.40
Consensus pattern (56 bp):
AATTAAGACAAAAATATTTTTCTTGTCTAAATTAAGACAAATATGTTTCTTGTCTA
Found at i:26428910 original size:28 final size:28
Alignment explanation
Indices: 26428793--26428983 Score: 215
Period size: 28 Copynumber: 6.6 Consensus size: 28
26428783 TCTTATCTTT
* *
26428793 AATTAAAACAAAAATATTTTATCTTGTCTA
1 AATTAAGACAAACATA-TTT-TCTTGTCTA
*
26428823 AATTGAGAC-AA-ATATGTTTCTTGTCTA
1 AATTAAGACAAACATAT-TTTCTTGTCTA
* *
26428850 GATTAAGACAAAAAATATTTTTCTTGTCTTA
1 AATTAAGAC-AAACATA-TTTTCTTGTC-TA
*
26428881 AATTAAGACAAATATATTTTCTTGTCTA
1 AATTAAGACAAACATATTTTCTTGTCTA
*
26428909 AATTAAGACAAACATGTTTTCTTGTCTA
1 AATTAAGACAAACATATTTTCTTGTCTA
* * *
26428937 AATTAACACATAACATGTTTTCTTGTTTA
1 AATTAAGACA-AACATATTTTCTTGTCTA
26428966 AATTAAGACAAACATATT
1 AATTAAGACAAACATATT
26428984 AAAGCTGTCA
Statistics
Matches: 142, Mismatches: 12, Indels: 16
0.84 0.07 0.09
Matches are distributed among these distances:
27 17 0.12
28 49 0.35
29 40 0.28
30 25 0.18
31 11 0.08
ACGTcount: A:0.40, C:0.12, G:0.08, T:0.40
Consensus pattern (28 bp):
AATTAAGACAAACATATTTTCTTGTCTA
Found at i:26430775 original size:18 final size:17
Alignment explanation
Indices: 26430754--26430788 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
26430744 AAAAGGTAGT
26430754 AAAGATGAAAAATGATGA
1 AAAGATGAAAAAT-ATGA
*
26430772 AAAGTTGAAAAATATGA
1 AAAGATGAAAAATATGA
26430789 TTGTATTCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.60, C:0.00, G:0.20, T:0.20
Consensus pattern (17 bp):
AAAGATGAAAAATATGA
Found at i:26434079 original size:21 final size:22
Alignment explanation
Indices: 26434053--26434111 Score: 95
Period size: 21 Copynumber: 2.8 Consensus size: 22
26434043 TGAAAACAAC
26434053 GACAAGTATCGATACTTGGG-T
1 GACAAGTATCGATACTTGGGTT
26434074 GACAAGTATCGATACTTGGGTT
1 GACAAGTATCGATACTTGGGTT
*
26434096 G-GAAGTATCGATACTT
1 GACAAGTATCGATACTT
26434112 TTGTTTTGGG
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
21 34 0.94
22 2 0.06
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.31
Consensus pattern (22 bp):
GACAAGTATCGATACTTGGGTT
Found at i:26438917 original size:19 final size:21
Alignment explanation
Indices: 26438885--26438930 Score: 60
Period size: 19 Copynumber: 2.3 Consensus size: 21
26438875 TATAAATTTC
*
26438885 ATTTTTATTAAAAAA-A-AAT
1 ATTTTAATTAAAAAACATAAT
*
26438904 ATTTTAATTGAAAAACATAAT
1 ATTTTAATTAAAAAACATAAT
26438925 ATTTTA
1 ATTTTA
26438931 TAATTTAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 13 0.57
20 1 0.04
21 9 0.39
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.43
Consensus pattern (21 bp):
ATTTTAATTAAAAAACATAAT
Found at i:26438925 original size:21 final size:19
Alignment explanation
Indices: 26438885--26438930 Score: 56
Period size: 21 Copynumber: 2.3 Consensus size: 19
26438875 TATAAATTTC
*
26438885 ATTTTTATTAAAAAAAAAT
1 ATTTTAATTAAAAAAAAAT
*
26438904 ATTTTAATTGAAAAACATAAT
1 ATTTTAATT-AAAAA-AAAAT
26438925 ATTTTA
1 ATTTTA
26438931 TAATTTAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 8 0.35
20 5 0.22
21 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.43
Consensus pattern (19 bp):
ATTTTAATTAAAAAAAAAT
Found at i:26440283 original size:28 final size:29
Alignment explanation
Indices: 26440242--26440301 Score: 68
Period size: 30 Copynumber: 2.1 Consensus size: 29
26440232 GTCTATGGGC
*
26440242 AATTTTTCAATTTT-TGGGGCAAAAATGT
1 AATTTTTCAATTTTAGGGGGCAAAAATGT
* * *
26440270 AATTTTTGACTTTTACGGGGGCAAAAGTGT
1 AATTTTTCAATTTTA-GGGGGCAAAAATGT
26440300 AA
1 AA
26440302 ATTTCAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
28 12 0.46
30 14 0.54
ACGTcount: A:0.32, C:0.08, G:0.22, T:0.38
Consensus pattern (29 bp):
AATTTTTCAATTTTAGGGGGCAAAAATGT
Found at i:26448464 original size:28 final size:29
Alignment explanation
Indices: 26448423--26448482 Score: 68
Period size: 30 Copynumber: 2.1 Consensus size: 29
26448413 GTCTATGGGC
*
26448423 AATTTTTCAATTTT-TGGGGCAAAAATGT
1 AATTTTTCAATTTTAGGGGGCAAAAATGT
* * *
26448451 AATTTTTGACTTTTACGGGGGCAAAAGTGT
1 AATTTTTCAATTTTA-GGGGGCAAAAATGT
26448481 AA
1 AA
26448483 ATTTCAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
28 12 0.46
30 14 0.54
ACGTcount: A:0.32, C:0.08, G:0.22, T:0.38
Consensus pattern (29 bp):
AATTTTTCAATTTTAGGGGGCAAAAATGT
Found at i:26452550 original size:21 final size:20
Alignment explanation
Indices: 26452490--26452563 Score: 85
Period size: 21 Copynumber: 3.6 Consensus size: 20
26452480 AAGCCCGATC
* * *
26452490 TATCAATACATTAGTCCTATG
1 TATCAATAGATT-GTCCCATT
*
26452511 TATCGATAGATTGTCCCATT
1 TATCAATAGATTGTCCCATT
*
26452531 TATCAATATATTGCTCCCATT
1 TATCAATAGATTG-TCCCATT
26452552 TATCAATAGATT
1 TATCAATAGATT
26452564 TGAAGCAGAA
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
20 17 0.38
21 28 0.62
ACGTcount: A:0.31, C:0.19, G:0.09, T:0.41
Consensus pattern (20 bp):
TATCAATAGATTGTCCCATT
Found at i:26452644 original size:23 final size:23
Alignment explanation
Indices: 26452618--26452663 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
26452608 TACATTGGTG
* *
26452618 CAATGTATTAATAGATTTGATAC
1 CAATGTACTAATAGATTTAATAC
*
26452641 CAATGTACTGATAGATTTAATAC
1 CAATGTACTAATAGATTTAATAC
26452664 AGAATGCACA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (23 bp):
CAATGTACTAATAGATTTAATAC
Found at i:26455245 original size:2 final size:2
Alignment explanation
Indices: 26455238--26455279 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
26455228 GAGAATTGAG
26455238 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26455280 TGTGTGNNNN
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:26455300 original size:2 final size:2
Alignment explanation
Indices: 26455295--26455336 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
26455285 GNNNNNNNNN
26455295 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26455337 TTGTGTGTGT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:26470846 original size:63 final size:63
Alignment explanation
Indices: 26470779--26470935 Score: 210
Period size: 63 Copynumber: 2.5 Consensus size: 63
26470769 TTGATGTAAT
* * *
26470779 CGTGCATGTACAGAGTGGGCAGTGCATATG-TCGGTTGAATGACGATGTTGTGACAAC-TACAAC
1 CGTGCATGTGCAGAGTGGGCAGTGCATATGCT-GGTCGAATGACAATGTTGTGAC-ACTTACAAC
* *
26470842 CGTGCATATGCATAGTGGGCAGTGCATATGCTGGTCGAATGACAATGTTGTGACACTTACAAC
1 CGTGCATGTGCAGAGTGGGCAGTGCATATGCTGGTCGAATGACAATGTTGTGACACTTACAAC
* * *
26470905 TGTTCATGTGCAGAGTGGGCAGTGCACATGC
1 CGTGCATGTGCAGAGTGGGCAGTGCATATGC
26470936 CGATAATGAT
Statistics
Matches: 82, Mismatches: 10, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
62 2 0.02
63 79 0.96
64 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.26
Consensus pattern (63 bp):
CGTGCATGTGCAGAGTGGGCAGTGCATATGCTGGTCGAATGACAATGTTGTGACACTTACAAC
Found at i:26473578 original size:38 final size:38
Alignment explanation
Indices: 26473536--26473676 Score: 185
Period size: 38 Copynumber: 3.7 Consensus size: 38
26473526 ATAGTGCCCG
*
26473536 TGTGCATGATGTGGGGGGATGTACACGATGGCACTGAT
1 TGTGCACGATGTGGGGGGATGTACACGATGGCACTGAT
* *
26473574 TGTGCACGATGTGGGGGGATGTATATGATGGCACTGAT
1 TGTGCACGATGTGGGGGGATGTACACGATGGCACTGAT
* * * *
26473612 TGTGCACAATGTGGGGGGATGCACACGATGGTGC-CGGCT
1 TGTGCACGATGTGGGGGGATGTACACGAT-G-GCACTGAT
26473651 ATGTGCACGATGTGGGGGGATGTACA
1 -TGTGCACGATGTGGGGGGATGTACA
26473677 TGAGCCGGGG
Statistics
Matches: 89, Mismatches: 11, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
38 60 0.67
39 4 0.04
40 25 0.28
ACGTcount: A:0.21, C:0.14, G:0.40, T:0.25
Consensus pattern (38 bp):
TGTGCACGATGTGGGGGGATGTACACGATGGCACTGAT
Found at i:26481525 original size:60 final size:59
Alignment explanation
Indices: 26481444--26481587 Score: 164
Period size: 60 Copynumber: 2.4 Consensus size: 59
26481434 TAGGAGACCA
* * **
26481444 AAACAGAAAGCTTT-TAGCTGCAGCAAGATTCAATCTCGCTGCAGCAAAATTGTAACCCAG
1 AAACAGAAAG-TTTCTCGCTGCAGCAA-ATTCAATCTAGCTGCAGCAAAATTACAACCCAG
* * * **
26481504 AAACAGAATGTTTCTGGCTGCAGTGAAATTCAATCTAGCTGCAGTGAAATTACAACCCAG
1 AAACAGAAAGTTTCTCGCTGCAG-CAAATTCAATCTAGCTGCAGCAAAATTACAACCCAG
*
26481564 AAACAGAAAGTTTCTCACTGCAGC
1 AAACAGAAAGTTTCTCGCTGCAGC
26481588 GAGAAGCTAC
Statistics
Matches: 70, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
59 3 0.04
60 65 0.93
61 2 0.03
ACGTcount: A:0.36, C:0.22, G:0.19, T:0.23
Consensus pattern (59 bp):
AAACAGAAAGTTTCTCGCTGCAGCAAATTCAATCTAGCTGCAGCAAAATTACAACCCAG
Found at i:26482006 original size:43 final size:43
Alignment explanation
Indices: 26481952--26482076 Score: 162
Period size: 43 Copynumber: 2.9 Consensus size: 43
26481942 TCATCATCAC
* ** *
26481952 CAGCTCATGCGCACTCCCTACTCGCACATGGCTGGGTCATCACT
1 CAGCTTATGCGCACTCCCTACTCGCACATAACCGGGTCATC-CT
* *
26481996 -GGGTTATGCGCACTCCCTACTCGCACATAACCGGGTCATCCT
1 CAGCTTATGCGCACTCCCTACTCGCACATAACCGGGTCATCCT
* *
26482038 CAGCTTATGCGCACTCCCTACTCGCACATACCCGAGTCA
1 CAGCTTATGCGCACTCCCTACTCGCACATAACCGGGTCA
26482077 ATATAATTAC
Statistics
Matches: 70, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
42 2 0.03
43 68 0.97
ACGTcount: A:0.20, C:0.38, G:0.19, T:0.22
Consensus pattern (43 bp):
CAGCTTATGCGCACTCCCTACTCGCACATAACCGGGTCATCCT
Found at i:26489590 original size:14 final size:15
Alignment explanation
Indices: 26489565--26489594 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
26489555 CTATTTTTGT
26489565 TCACTAAGGTTTTTC
1 TCACTAAGGTTTTTC
26489580 TCACT-AGGTTTTTC
1 TCACTAAGGTTTTTC
26489594 T
1 T
26489595 TGGTAAGATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.17, C:0.20, G:0.13, T:0.50
Consensus pattern (15 bp):
TCACTAAGGTTTTTC
Found at i:26491046 original size:72 final size:74
Alignment explanation
Indices: 26490876--26491073 Score: 246
Period size: 73 Copynumber: 2.7 Consensus size: 74
26490866 AAATTGCAAA
* ** *
26490876 CAGAGAGC-TCTTAGTCGACTAACT-TTCTTCTTGGTCGACTAAGTTGCCTCTGTCTTCTAGTCG
1 CAGAGAGCATCTTAGTCGACTAACTCAT-TTCTTGGTCGACTAAGTTGGTTCTGTCTTCAAGTCG
26490939 CAGATTTTGG
65 CAGATTTTGG
* *
26490949 CAGAGAGCAT-TTAGTCGACTAACTCATTTCTTGGTCGACTAAGTTGGTTCTGTCTTGAAGTC-T
1 CAGAGAGCATCTTAGTCGACTAACTCATTTCTTGGTCGACTAAGTTGGTTCTGTCTTCAAGTCGC
26491012 AGATTTTGG
66 AGATTTTGG
* * **
26491021 CAGTA-A-CTTCTTAGTCAACTAACTCACATCTTGGTCGACTAAGTTGGTTCTGT
1 CAG-AGAGCATCTTAGTCGACTAACTCATTTCTTGGTCGACTAAGTTGGTTCTGT
26491074 TTCTCAATAT
Statistics
Matches: 111, Mismatches: 10, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
71 2 0.02
72 53 0.48
73 54 0.49
74 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.37
Consensus pattern (74 bp):
CAGAGAGCATCTTAGTCGACTAACTCATTTCTTGGTCGACTAAGTTGGTTCTGTCTTCAAGTCGC
AGATTTTGG
Found at i:26495840 original size:21 final size:20
Alignment explanation
Indices: 26495816--26495863 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 20
26495806 TCTTACCTTT
*
26495816 TTTTTCACTTGTTTCCTTGAA
1 TTTTTCACTT-TTCCCTTGAA
*
26495837 TTTTCACACTTTTCCCTTGAA
1 TTTT-TCACTTTTCCCTTGAA
26495858 TTTTTC
1 TTTTTC
26495864 CACCTAGGGT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 17 0.74
22 5 0.22
ACGTcount: A:0.15, C:0.23, G:0.06, T:0.56
Consensus pattern (20 bp):
TTTTTCACTTTTCCCTTGAA
Found at i:26495863 original size:22 final size:22
Alignment explanation
Indices: 26495821--26495861 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
26495811 CCTTTTTTTT
*
26495821 CACTTGTTTCCTTGAATTTTCA
1 CACTTGTTCCCTTGAATTTTCA
26495843 CACTT-TTCCCTTGAATTTT
1 CACTTGTTCCCTTGAATTTT
26495862 TCCACCTAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.17, C:0.24, G:0.07, T:0.51
Consensus pattern (22 bp):
CACTTGTTCCCTTGAATTTTCA
Found at i:26500482 original size:22 final size:22
Alignment explanation
Indices: 26500454--26500515 Score: 97
Period size: 22 Copynumber: 2.8 Consensus size: 22
26500444 TTTAAAACAA
*
26500454 CTTTAAACCCAAAAGCTCTAAT
1 CTTTAAAACCAAAAGCTCTAAT
* *
26500476 CTTTAAAACTAAAAGCTCTGAT
1 CTTTAAAACCAAAAGCTCTAAT
26500498 CTTTAAAACCAAAAGCTC
1 CTTTAAAACCAAAAGCTC
26500516 AGATACCAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 36 1.00
ACGTcount: A:0.42, C:0.24, G:0.06, T:0.27
Consensus pattern (22 bp):
CTTTAAAACCAAAAGCTCTAAT
Found at i:26502865 original size:20 final size:20
Alignment explanation
Indices: 26502839--26502884 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
26502829 AATCTTACCT
* *
26502839 TTTTTCACTTGTTTCCTTGAA
1 TTTTACACTT-TTCCCTTGAA
26502860 TTTTCACACTTTTCCCTTGAA
1 TTTT-ACACTTTTCCCTTGAA
26502881 TTTT
1 TTTT
26502885 TCCACCTAGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 17 0.77
22 5 0.23
ACGTcount: A:0.15, C:0.22, G:0.07, T:0.57
Consensus pattern (20 bp):
TTTTACACTTTTCCCTTGAA
Found at i:26502886 original size:22 final size:22
Alignment explanation
Indices: 26502844--26502884 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
26502834 TACCTTTTTT
*
26502844 CACTTGTTTCCTTGAATTTTCA
1 CACTTGTTCCCTTGAATTTTCA
26502866 CACTT-TTCCCTTGAATTTT
1 CACTTGTTCCCTTGAATTTT
26502885 TCCACCTAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.17, C:0.24, G:0.07, T:0.51
Consensus pattern (22 bp):
CACTTGTTCCCTTGAATTTTCA
Found at i:26517252 original size:20 final size:20
Alignment explanation
Indices: 26517229--26517277 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
26517219 AACAAAATAG
** *
26517229 AGAAATAAAAGTTAAAATTT
1 AGAAATAAAACATAAAATGT
26517249 AGAAATAAAACATAAAATGT
1 AGAAATAAAACATAAAATGT
26517269 A-AAATAAAA
1 AGAAATAAAA
26517278 TTACACGAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 8 0.31
20 18 0.69
ACGTcount: A:0.67, C:0.02, G:0.08, T:0.22
Consensus pattern (20 bp):
AGAAATAAAACATAAAATGT
Found at i:26541533 original size:29 final size:29
Alignment explanation
Indices: 26541496--26541589 Score: 154
Period size: 29 Copynumber: 3.3 Consensus size: 29
26541486 GACAACTTTT
26541496 ACATG-TTTGTCTTAATTTAGACAAGAAA
1 ACATGTTTTGTCTTAATTTAGACAAGAAA
* *
26541524 ACATGTTTTGTCTTAAATTAGATAAGAAA
1 ACATGTTTTGTCTTAATTTAGACAAGAAA
*
26541553 ACATGTTTTGTTTTAATTTAGACAAGAAA
1 ACATGTTTTGTCTTAATTTAGACAAGAAA
26541582 ACATGTTT
1 ACATGTTT
26541590 AGAAAACATG
Statistics
Matches: 60, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
28 5 0.08
29 55 0.92
ACGTcount: A:0.38, C:0.09, G:0.14, T:0.39
Consensus pattern (29 bp):
ACATGTTTTGTCTTAATTTAGACAAGAAA
Found at i:26541595 original size:13 final size:13
Alignment explanation
Indices: 26541577--26541602 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26541567 AATTTAGACA
26541577 AGAAAACATGTTT
1 AGAAAACATGTTT
26541590 AGAAAACATGTTT
1 AGAAAACATGTTT
26541603 TGTCTTTATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.15, T:0.31
Consensus pattern (13 bp):
AGAAAACATGTTT
Found at i:26541614 original size:42 final size:42
Alignment explanation
Indices: 26541548--26541631 Score: 152
Period size: 42 Copynumber: 2.0 Consensus size: 42
26541538 AAATTAGATA
26541548 AGAAAACATGTTTTGTTTTAATTTAGACAAGAAAACATGTTT
1 AGAAAACATGTTTTGTTTTAATTTAGACAAGAAAACATGTTT
26541590 AGAAAACATGTTTTGTCTTT-ATTTAGACAAGAAAACATGTTT
1 AGAAAACATGTTTTGT-TTTAATTTAGACAAGAAAACATGTTT
26541632 TGTCTTAATT
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
42 38 0.93
43 3 0.07
ACGTcount: A:0.39, C:0.08, G:0.14, T:0.38
Consensus pattern (42 bp):
AGAAAACATGTTTTGTTTTAATTTAGACAAGAAAACATGTTT
Found at i:26544791 original size:22 final size:22
Alignment explanation
Indices: 26544762--26544820 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 22
26544752 CAATTAGTTA
*
26544762 TTAAGCATTGCAAGACTGGTTT
1 TTAAGCATTACAAGACTGGTTT
* * *
26544784 TTAGGCATTACGAGAGTGGTTT
1 TTAAGCATTACAAGACTGGTTT
*
26544806 TTAAGCATTTCAAGA
1 TTAAGCATTACAAGA
26544821 TTTGCTTTAA
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.29, C:0.12, G:0.24, T:0.36
Consensus pattern (22 bp):
TTAAGCATTACAAGACTGGTTT
Found at i:26545070 original size:22 final size:22
Alignment explanation
Indices: 26545034--26545088 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
26545024 GACTGTTTGA
*
26545034 TAAGGCTTTGCGTGACTGACTT
1 TAAGGCATTGCGTGACTGACTT
*
26545056 TAAGGCATTGTGTGACTGACTT
1 TAAGGCATTGCGTGACTGACTT
*
26545078 TTAGGCATTGC
1 TAAGGCATTGC
26545089 ACATCTAGTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.20, C:0.16, G:0.27, T:0.36
Consensus pattern (22 bp):
TAAGGCATTGCGTGACTGACTT
Found at i:26545148 original size:23 final size:22
Alignment explanation
Indices: 26545116--26545194 Score: 74
Period size: 23 Copynumber: 3.6 Consensus size: 22
26545106 ATTGTGGGAC
*
26545116 TTAGGTATTGCGTGACTAGTTTT
1 TTAGGCATTGCGTGACTA-TTTT
*
26545139 TTAGGCATTGTGTGACTCATTTT
1 TTAGGCATTGCGTGACT-ATTTT
* *
26545162 TT-GGCATTACGTGGA-T-TTTA
1 TTAGGCATTGCGT-GACTATTTT
26545182 TTAGGCATTGCGT
1 TTAGGCATTGCGT
26545195 AATACGTTTT
Statistics
Matches: 47, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
20 5 0.11
21 9 0.19
22 9 0.19
23 23 0.49
24 1 0.02
ACGTcount: A:0.18, C:0.11, G:0.25, T:0.46
Consensus pattern (22 bp):
TTAGGCATTGCGTGACTATTTT
Found at i:26547236 original size:17 final size:18
Alignment explanation
Indices: 26547206--26547241 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
26547196 AAAAACAATT
*
26547206 AAATATCAACACTAAATA
1 AAATAACAACACTAAATA
26547224 AAATAACAA-ACTAAATA
1 AAATAACAACACTAAATA
26547241 A
1 A
26547242 GTTGAGAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.67, C:0.14, G:0.00, T:0.19
Consensus pattern (18 bp):
AAATAACAACACTAAATA
Found at i:26550575 original size:17 final size:17
Alignment explanation
Indices: 26550550--26550584 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
26550540 AAAGAATCTA
26550550 GTATAAGATGAAGTGTC
1 GTATAAGATGAAGTGTC
*
26550567 GTATCAGATGAAGTGTC
1 GTATAAGATGAAGTGTC
26550584 G
1 G
26550585 AATGAATCGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (17 bp):
GTATAAGATGAAGTGTC
Found at i:26552177 original size:72 final size:71
Alignment explanation
Indices: 26551930--26552236 Score: 242
Period size: 72 Copynumber: 4.3 Consensus size: 71
26551920 AAATCCTCGA
** * * * * * * * *
26551930 TGGCTATCTATTGATAGATTCCATGTATCTATCAATAGACGTGTGTCAAGGTCAAGTAACATGGT
1 TGGCTATCTATTGATAGATTCTGTATATCTATCGATAGATGTATGCCACGATCCA-TAACATGGT
26551995 TCCCGAT
65 TCCCGAT
** * * * *
26552002 TGTTTATCTATCGATGGA-TCT-TGATATCTATCGATAGATGCATGGCAC-AGTCCAGTAACATG
1 TGGCTATCTATTGATAGATTCTGT-ATATCTATCGATAGATGTATGCCACGA-TCCA-TAACATG
*
26552064 GTTACCCTAT
63 GTT-CCCGAT
* * * * * *
26552074 TGGCTATCTATTAATAGATGCGGTTTATCTATTGATAGATGTATGCCACGATCTTATAACATGGT
1 TGGCTATCTATTGATAGATTCTGTATATCTATCGATAGATGTATGCCACGATC-CATAACATGGT
*
26552139 TCCCAAT
65 TCCCGAT
* * * * * *
26552146 TGGTTATCTATTGATAGATTCTGTAGATCTATCGACAGATGTATGCCATGGTCACGTAACATGGT
1 TGGCTATCTATTGATAGATTCTGTATATCTATCGATAGATGTATGCCACGATC-CATAACATGGT
*
26552211 TCCCGGT
65 TCCCGAT
*
26552218 TGGCTATTTATTGATAGAT
1 TGGCTATCTATTGATAGAT
26552237 CTTGGTATTT
Statistics
Matches: 183, Mismatches: 45, Indels: 14
0.76 0.19 0.06
Matches are distributed among these distances:
70 1 0.01
71 34 0.19
72 111 0.61
73 34 0.19
74 3 0.02
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.36
Consensus pattern (71 bp):
TGGCTATCTATTGATAGATTCTGTATATCTATCGATAGATGTATGCCACGATCCATAACATGGTT
CCCGAT
Found at i:26552546 original size:19 final size:20
Alignment explanation
Indices: 26552519--26552564 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
26552509 AAGAGACAAG
*
26552519 ATAAAATTTTTA-GAATAAA
1 ATAATATTTTTATGAATAAA
*
26552538 ATAATA-TTTTATTAATAAA
1 ATAATATTTTTATGAATAAA
26552557 ATAATATT
1 ATAATATT
26552565 AAAATATTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 5 0.22
19 17 0.74
20 1 0.04
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.43
Consensus pattern (20 bp):
ATAATATTTTTATGAATAAA
Found at i:26553009 original size:20 final size:20
Alignment explanation
Indices: 26552966--26553003 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
26552956 TTTTGGCCCC
*
26552966 ATTTGACTTATTGGAGTATA
1 ATTTGACTTATTGGACTATA
26552986 ATTTGACTTATTGGACTA
1 ATTTGACTTATTGGACTA
26553004 AGATTTAAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.29, C:0.08, G:0.18, T:0.45
Consensus pattern (20 bp):
ATTTGACTTATTGGACTATA
Found at i:26571240 original size:39 final size:40
Alignment explanation
Indices: 26571178--26571264 Score: 124
Period size: 39 Copynumber: 2.2 Consensus size: 40
26571168 ATATTGGCTT
*
26571178 CGAAGGTATTTACTAGCCATGCTCAG-CTGTGCATTTTCAAC
1 CGAAGGTA-TTACTAGCCATGCTCAGTC-GTGCATCTTCAAC
*
26571219 CGAAGGTA-TACTGGCCATGCTCAGTCGTGCATCTTCAAC
1 CGAAGGTATTACTAGCCATGCTCAGTCGTGCATCTTCAAC
26571258 CGAAGGT
1 CGAAGGT
26571265 GGAGGTAGAG
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
39 34 0.79
40 1 0.02
41 8 0.19
ACGTcount: A:0.24, C:0.25, G:0.23, T:0.28
Consensus pattern (40 bp):
CGAAGGTATTACTAGCCATGCTCAGTCGTGCATCTTCAAC
Found at i:26573287 original size:22 final size:22
Alignment explanation
Indices: 26573259--26573323 Score: 76
Period size: 22 Copynumber: 3.0 Consensus size: 22
26573249 CCAGTCATAA
26573259 AATGACTAAAAATCAATCACGC
1 AATGACTAAAAATCAATCACGC
* * *
26573281 AATGACTAAAAATTAGTCACGT
1 AATGACTAAAAATCAATCACGC
* * *
26573303 AATGCCTAAAGACCAATCACG
1 AATGACTAAAAATCAATCACG
26573324 AAAAGCCCTA
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.46, C:0.22, G:0.12, T:0.20
Consensus pattern (22 bp):
AATGACTAAAAATCAATCACGC
Found at i:26573429 original size:39 final size:38
Alignment explanation
Indices: 26573341--26573430 Score: 101
Period size: 39 Copynumber: 2.4 Consensus size: 38
26573331 CTATTAACTC
* * *
26573341 GTCATGCAATGCC-TAAAACCAATCACGTAAATCCTAT
1 GTCATGCAATGCCTTAAAACCAATCACGCAAACCCTAA
* * *
26573378 GTCATGCCATGCCTTACCAACCATTCACGCAAACCCTAA
1 GTCATGCAATGCCTTA-AAACCAATCACGCAAACCCTAA
*
26573417 GTCACGCAATGCCT
1 GTCATGCAATGCCT
26573431 AATCTTAACC
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
37 12 0.28
38 2 0.05
39 29 0.67
ACGTcount: A:0.32, C:0.33, G:0.12, T:0.22
Consensus pattern (38 bp):
GTCATGCAATGCCTTAAAACCAATCACGCAAACCCTAA
Found at i:26575600 original size:14 final size:15
Alignment explanation
Indices: 26575576--26575604 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
26575566 ACAAAGAGAA
26575576 GAAGAAAAGAAAAAG
1 GAAGAAAAGAAAAAG
26575591 GAAG-AAAGAAAAAG
1 GAAGAAAAGAAAAAG
26575605 ATAAGTCACT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (15 bp):
GAAGAAAAGAAAAAG
Found at i:26579952 original size:5 final size:5
Alignment explanation
Indices: 26579942--26579981 Score: 71
Period size: 5 Copynumber: 8.0 Consensus size: 5
26579932 AGAATCAATA
*
26579942 TAGAT TAGAT TAGAT TAGAT TAGAT TAGAT TAGAC TAGAT
1 TAGAT TAGAT TAGAT TAGAT TAGAT TAGAT TAGAT TAGAT
26579982 AGTCTTGAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 33 1.00
ACGTcount: A:0.40, C:0.03, G:0.20, T:0.38
Consensus pattern (5 bp):
TAGAT
Found at i:26582083 original size:36 final size:36
Alignment explanation
Indices: 26582043--26582114 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
26582033 CATCTGATAC
*
26582043 TGTTATTTTTCTTATATATATATATATTTTTTAATT
1 TGTTATTTTTCTTATATATATATATATATTTTAATT
26582079 TGTTATTTTTCTTATATATATATATATATTTTAATT
1 TGTTATTTTTCTTATATATATATATATATTTTAATT
26582115 GTCACGATTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.65
Consensus pattern (36 bp):
TGTTATTTTTCTTATATATATATATATATTTTAATT
Found at i:26582126 original size:36 final size:36
Alignment explanation
Indices: 26582050--26582126 Score: 102
Period size: 36 Copynumber: 2.1 Consensus size: 36
26582040 TACTGTTATT
* * **
26582050 TTTCTTATATATATATATATTTTTTAATTTGTTATT
1 TTTCTTATATATATATATATATTTTAATTTGTCAGA
26582086 TTTCTTATATATATATATATATTTTAA-TTGTCACGA
1 TTTCTTATATATATATATATATTTTAATTTGTCA-GA
26582122 TTTCT
1 TTTCT
26582127 CATTATTTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
35 5 0.14
36 31 0.86
ACGTcount: A:0.29, C:0.06, G:0.04, T:0.61
Consensus pattern (36 bp):
TTTCTTATATATATATATATATTTTAATTTGTCAGA
Found at i:26585546 original size:72 final size:72
Alignment explanation
Indices: 26585350--26585557 Score: 208
Period size: 72 Copynumber: 2.9 Consensus size: 72
26585340 TGCTCTGGTT
* *
26585350 CAAATTGTAGACAGAGAGC-TCTTAG-TAGACTAACTTTCTTCTTGGTCGACTAAGTTGGTTTTG
1 CAAATTCTAG-CAGAGAGCAT-TTAGTTA-ACTAAC-TTCATCTTGGTCGACTAAGTTGGTTTTG
**
26585413 TCTTCTGGTCA
62 TCTTCAAGTCA
* * ** * *
26585424 CAGATTCTAGCAAAGAGCATTTAGTCGACTAAC-TCATTCTTAGTCTACTAAGTTGGTTTTGTCT
1 CAAATTCTAGCAGAGAGCATTTAGTTAACTAACTTCA-TCTTGGTCGACTAAGTTGGTTTTGTCT
*
26585488 TGAAGTC-
65 TCAAGTCA
* * *
26585495 CAAATTTTGGCAGAGAGCATTTAGTTAACTAACTTACATCTTGGTCGACTAAGTCGGTTTTGT
1 CAAATTCTAGCAGAGAGCATTTAGTTAACTAACTT-CATCTTGGTCGACTAAGTTGGTTTTGT
26585558 TGCTCAATAT
Statistics
Matches: 109, Mismatches: 20, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
71 29 0.27
72 52 0.48
73 19 0.17
74 9 0.08
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.37
Consensus pattern (72 bp):
CAAATTCTAGCAGAGAGCATTTAGTTAACTAACTTCATCTTGGTCGACTAAGTTGGTTTTGTCTT
CAAGTCA
Found at i:26589280 original size:13 final size:13
Alignment explanation
Indices: 26589262--26589286 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26589252 TTTCAGAAAA
26589262 TTTATAAAATCAT
1 TTTATAAAATCAT
26589275 TTTATAAAATCA
1 TTTATAAAATCA
26589287 CAATTTCTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTTATAAAATCAT
Found at i:26594631 original size:26 final size:26
Alignment explanation
Indices: 26594602--26594652 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
26594592 ATAAAAATTT
* *
26594602 ATTTAATTTAAAATAAAAATATAAAG
1 ATTTAATTGAAAATAAAAAAATAAAG
*
26594628 ATTTAATTGAAAGTAAAAAAATAAA
1 ATTTAATTGAAAATAAAAAAATAAA
26594653 AGTTAGTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.63, C:0.00, G:0.06, T:0.31
Consensus pattern (26 bp):
ATTTAATTGAAAATAAAAAAATAAAG
Found at i:26597649 original size:2 final size:2
Alignment explanation
Indices: 26597642--26597698 Score: 87
Period size: 2 Copynumber: 28.5 Consensus size: 2
26597632 TTATTGGAAT
*
26597642 AC AC AC AC AC AC AC AC AC AC AC AC GC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
* *
26597684 TC AC AC GC AC AC AC A
1 AC AC AC AC AC AC AC A
26597699 GAGTATATTG
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.46, C:0.49, G:0.04, T:0.02
Consensus pattern (2 bp):
AC
Found at i:26614444 original size:17 final size:17
Alignment explanation
Indices: 26614409--26614446 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
26614399 CTTAAAAATA
*
26614409 TTTTTTAATTATTTTAG
1 TTTTTTAATTATTTAAG
26614426 TTTTTTAATTGA-TTAAG
1 TTTTTTAATT-ATTTAAG
26614443 TTTT
1 TTTT
26614447 ACATTTAACT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 18 0.95
18 1 0.05
ACGTcount: A:0.24, C:0.00, G:0.08, T:0.68
Consensus pattern (17 bp):
TTTTTTAATTATTTAAG
Found at i:26619323 original size:15 final size:15
Alignment explanation
Indices: 26619303--26619332 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
26619293 CATCACTCTT
26619303 AGAAAATGTTTTCCA
1 AGAAAATGTTTTCCA
26619318 AGAAAATGTTTTCCA
1 AGAAAATGTTTTCCA
26619333 TTGTTCAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.33
Consensus pattern (15 bp):
AGAAAATGTTTTCCA
Found at i:26622587 original size:19 final size:20
Alignment explanation
Indices: 26622563--26622600 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
26622553 CTATAAATAC
26622563 CTTGAA-TTTCCAGCAGCTT
1 CTTGAATTTTCCAGCAGCTT
26622582 CTTGAATTTTCCAGCAGCT
1 CTTGAATTTTCCAGCAGCT
26622601 AGTCTTCTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.21, C:0.26, G:0.16, T:0.37
Consensus pattern (20 bp):
CTTGAATTTTCCAGCAGCTT
Found at i:26623444 original size:43 final size:43
Alignment explanation
Indices: 26623387--26623518 Score: 160
Period size: 43 Copynumber: 3.1 Consensus size: 43
26623377 GTAATTATAT
* *
26623387 TGACTCGGCTATGTGCGAGTAGGGAGTGCGCATAA-GTCGAG-GA
1 TGACCCGGCTATGTGCGAGTAGGGAGTGCGCATAACCT-G-GTGA
* *
26623430 TGACCCGGTTATGTGCGAGTAGGGAGTACGCATAACCTGGTGA
1 TGACCCGGCTATGTGCGAGTAGGGAGTGCGCATAACCTGGTGA
* * * *
26623473 TGACCCAGCCATGTGCGAGTAGGGAGTGCGCATGAGCTGGTGA
1 TGACCCGGCTATGTGCGAGTAGGGAGTGCGCATAACCTGGTGA
26623516 TGA
1 TGA
26623519 TGATGATGGG
Statistics
Matches: 77, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
42 1 0.01
43 75 0.97
44 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.38, T:0.21
Consensus pattern (43 bp):
TGACCCGGCTATGTGCGAGTAGGGAGTGCGCATAACCTGGTGA
Found at i:26623897 original size:61 final size:61
Alignment explanation
Indices: 26623819--26623968 Score: 191
Period size: 60 Copynumber: 2.5 Consensus size: 61
26623809 AACTGTAGCT
* *
26623819 TCTCGCTGCAGCT-AGAAATTTTCTGTTTTCTGGGTTA-TAATTTCGCTGCAGCGAGATTGAA
1 TCTCGCTGCAGCTAAGAAACTTTCTGTTTT-TGGG-TAGAAATTTCGCTGCAGCGAGATTGAA
* * * *
26623880 TCTCGCTGCAG-TAAGAAACATTCTATTTTTGGGTAGAAATTTCGTTGCAGCGAGATTTAA
1 TCTCGCTGCAGCTAAGAAACTTTCTGTTTTTGGGTAGAAATTTCGCTGCAGCGAGATTGAA
*
26623940 TCTCGCTGCAGCGAA-AAACTTTCTGTTTT
1 TCTCGCTGCAGCTAAGAAACTTTCTGTTTT
26623969 GGTCTCTTAT
Statistics
Matches: 77, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
59 2 0.03
60 49 0.64
61 26 0.34
ACGTcount: A:0.24, C:0.18, G:0.21, T:0.37
Consensus pattern (61 bp):
TCTCGCTGCAGCTAAGAAACTTTCTGTTTTTGGGTAGAAATTTCGCTGCAGCGAGATTGAA
Found at i:26629222 original size:7 final size:7
Alignment explanation
Indices: 26629209--26629238 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
26629199 TTTGTATAAT
26629209 CACAATA
1 CACAATA
*
26629216 AACAATA
1 CACAATA
26629223 CACAATA
1 CACAATA
26629230 CACAATA
1 CACAATA
26629237 CA
1 CA
26629239 TGCATTAAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.60, C:0.27, G:0.00, T:0.13
Consensus pattern (7 bp):
CACAATA
Found at i:26640610 original size:20 final size:21
Alignment explanation
Indices: 26640574--26640620 Score: 71
Period size: 20 Copynumber: 2.3 Consensus size: 21
26640564 AAGCAATTTA
*
26640574 AAAC-AAAATAACATTAAATT
1 AAACTAAAATAACATTAAATC
26640594 AAACTAAAATAAC-TTAAATC
1 AAACTAAAATAACATTAAATC
26640614 AAACTAA
1 AAACTAA
26640621 TTAACATGTA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 17 0.68
21 8 0.32
ACGTcount: A:0.64, C:0.13, G:0.00, T:0.23
Consensus pattern (21 bp):
AAACTAAAATAACATTAAATC
Found at i:26646217 original size:2 final size:2
Alignment explanation
Indices: 26646212--26646240 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
26646202 CATATATGTG
26646212 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
26646241 CAATCATCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:26655640 original size:41 final size:41
Alignment explanation
Indices: 26655576--26655655 Score: 126
Period size: 41 Copynumber: 2.0 Consensus size: 41
26655566 TTCCAACTGC
*
26655576 TTCCAGCTAATTATGACTTGCAGACTTCC-TCTGCTTGATGT
1 TTCCAGCTAATTATGACTCGCAGACTTCCTTC-GCTTGATGT
*
26655617 TTCCAGCTAATTATGCCTCGCAGACTTCCTTCGCTTGAT
1 TTCCAGCTAATTATGACTCGCAGACTTCCTTCGCTTGAT
26655656 ATAAAGGATG
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
41 34 0.94
42 2 0.06
ACGTcount: A:0.19, C:0.28, G:0.16, T:0.38
Consensus pattern (41 bp):
TTCCAGCTAATTATGACTCGCAGACTTCCTTCGCTTGATGT
Found at i:26671650 original size:20 final size:20
Alignment explanation
Indices: 26671625--26671670 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
26671615 TTTTGACCCT
* *
26671625 ATTTGACTTATTGGAGTATG
1 ATTTGACTAATTGAAGTATG
*
26671645 ATTTGAGTAATTGAAGTATG
1 ATTTGACTAATTGAAGTATG
26671665 ATTTGA
1 ATTTGA
26671671 GGTTTAGAAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.02, G:0.24, T:0.43
Consensus pattern (20 bp):
ATTTGACTAATTGAAGTATG
Found at i:26671671 original size:20 final size:20
Alignment explanation
Indices: 26671634--26671671 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
26671624 TATTTGACTT
*
26671634 ATTGGAGTATGATTTGAGTA
1 ATTGAAGTATGATTTGAGTA
26671654 ATTGAAGTATGATTTGAG
1 ATTGAAGTATGATTTGAG
26671672 GTTTAGAAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.29, T:0.39
Consensus pattern (20 bp):
ATTGAAGTATGATTTGAGTA
Found at i:26672908 original size:13 final size:13
Alignment explanation
Indices: 26672890--26672914 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26672880 GGAGAAATTG
26672890 TGATTTTATAAAA
1 TGATTTTATAAAA
26672903 TGATTTTATAAA
1 TGATTTTATAAA
26672915 TTTTCTGAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TGATTTTATAAAA
Found at i:26674456 original size:21 final size:21
Alignment explanation
Indices: 26674432--26674471 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
26674422 ATTTAAATTG
26674432 CTCTGTAC-CTTTTTCTTCTTT
1 CTCT-TACTCTTTTTCTTCTTT
*
26674453 CTCTTTCTCTTTTTCTTCT
1 CTCTTACTCTTTTTCTTCT
26674472 CTTTTGTCCT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 2 0.12
21 15 0.88
ACGTcount: A:0.03, C:0.30, G:0.03, T:0.65
Consensus pattern (21 bp):
CTCTTACTCTTTTTCTTCTTT
Done.