Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38630433
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 2298367 characters in sequence are not A, C, G, or T
File 70 of 97
Found at i:28184452 original size:2 final size:2
Alignment explanation
Indices: 28184447--28184473 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
28184437 ATATATATAT
28184447 AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG A
28184474 AAGGGGGTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:28185344 original size:26 final size:26
Alignment explanation
Indices: 28185307--28185359 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28185297 CACAATTTCT
28185307 TCTGTTTATTGAAAACACCCACTCTC
1 TCTGTTTATTGAAAACACCCACTCTC
* *
28185333 TCTGTTTGTTGAAAGCACCCACTCTC
1 TCTGTTTATTGAAAACACCCACTCTC
28185359 T
1 T
28185360 AAAGTCTGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.30, G:0.11, T:0.36
Consensus pattern (26 bp):
TCTGTTTATTGAAAACACCCACTCTC
Found at i:28186379 original size:13 final size:14
Alignment explanation
Indices: 28186349--28186380 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
28186339 AGATATCCTT
28186349 TTAATTCTTTTCCA
1 TTAATTCTTTTCCA
28186363 -TAATTCTTTT-CA
1 TTAATTCTTTTCCA
28186375 TTAATT
1 TTAATT
28186381 GGCTTCATAG
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
12 2 0.12
13 15 0.88
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59
Consensus pattern (14 bp):
TTAATTCTTTTCCA
Found at i:28188919 original size:17 final size:17
Alignment explanation
Indices: 28188897--28188932 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
28188887 ATGAGAATTT
28188897 CTCCCCCTAAGTGAGTG
1 CTCCCCCTAAGTGAGTG
* *
28188914 CTCCCCCTTAGTGTGTG
1 CTCCCCCTAAGTGAGTG
28188931 CT
1 CT
28188933 TATTTTACTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.11, C:0.36, G:0.22, T:0.31
Consensus pattern (17 bp):
CTCCCCCTAAGTGAGTG
Found at i:28198166 original size:23 final size:24
Alignment explanation
Indices: 28198132--28198177 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
28198122 AGTCCGTATT
28198132 ATAAATGAATTT-ACATATGACCA
1 ATAAATGAATTTCACATATGACCA
28198155 ATAAATTG-ATTTCACATATGACC
1 ATAAA-TGAATTTCACATATGACC
28198178 TTCCTGAGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 9 0.43
24 12 0.57
ACGTcount: A:0.43, C:0.15, G:0.09, T:0.33
Consensus pattern (24 bp):
ATAAATGAATTTCACATATGACCA
Found at i:28201209 original size:6 final size:6
Alignment explanation
Indices: 28201198--28201227 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
28201188 TAATGCTACA
*
28201198 GCTTCT GCTTCT GCTTCT GCTTCT TCTTCT
1 GCTTCT GCTTCT GCTTCT GCTTCT GCTTCT
28201228 ATACATAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.00, C:0.33, G:0.13, T:0.53
Consensus pattern (6 bp):
GCTTCT
Found at i:28206883 original size:6 final size:6
Alignment explanation
Indices: 28206874--28206919 Score: 83
Period size: 6 Copynumber: 7.7 Consensus size: 6
28206864 TTCCCCTTAC
*
28206874 ACCTAT ACCTAT ACCTAT ACCTAT ACCTAT ACCTAC ACCTAT ACCT
1 ACCTAT ACCTAT ACCTAT ACCTAT ACCTAT ACCTAT ACCTAT ACCT
28206920 TCCAGAGCAG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 38 1.00
ACGTcount: A:0.33, C:0.37, G:0.00, T:0.30
Consensus pattern (6 bp):
ACCTAT
Found at i:28212791 original size:15 final size:15
Alignment explanation
Indices: 28212771--28212822 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
28212761 GGTATATTAC
28212771 TGAGAATG-AGATTGT
1 TGAGAATGTA-ATTGT
28212786 TGAGAATGTAATTGT
1 TGAGAATGTAATTGT
* *
28212801 TGA-ATATATAATTGC
1 TGAGA-ATGTAATTGT
28212816 TGAGAAT
1 TGAGAAT
28212823 ATAACTTTAC
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
14 1 0.03
15 29 0.91
16 2 0.06
ACGTcount: A:0.37, C:0.02, G:0.25, T:0.37
Consensus pattern (15 bp):
TGAGAATGTAATTGT
Found at i:28212824 original size:15 final size:15
Alignment explanation
Indices: 28212781--28212826 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
28212771 TGAGAATGAG
*
28212781 ATTGTTGAGAATGTA
1 ATTGTTGAGAATATA
28212796 ATTGTTGA-ATATATA
1 ATTGTTGAGA-ATATA
*
28212811 ATTGCTGAGAATATA
1 ATTGTTGAGAATATA
28212826 A
1 A
28212827 CTTTACAGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
14 1 0.04
15 25 0.93
16 1 0.04
ACGTcount: A:0.39, C:0.02, G:0.20, T:0.39
Consensus pattern (15 bp):
ATTGTTGAGAATATA
Found at i:28213224 original size:20 final size:20
Alignment explanation
Indices: 28213179--28213231 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
28213169 AATAAAAAAT
*
28213179 TCTATCGATAGATCACATTA
1 TCTATCGATAGATCACACTA
* *
28213199 TCTATCGATAGATTATACTA
1 TCTATCGATAGATCACACTA
* *
28213219 TTTATCAATAGAT
1 TCTATCGATAGAT
28213232 AAAACTCGTT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.36, C:0.15, G:0.09, T:0.40
Consensus pattern (20 bp):
TCTATCGATAGATCACACTA
Found at i:28213660 original size:28 final size:28
Alignment explanation
Indices: 28213625--28213691 Score: 82
Period size: 28 Copynumber: 2.4 Consensus size: 28
28213615 GAAAAAGGTG
* * *
28213625 GGAAGGAAGAATGCGAAGAAGGCAGGAA
1 GGAAGGAAAAAAGCGAACAAGGCAGGAA
*
28213653 GGAAGGAAAAAAGTGAACAAGGCAGGAA
1 GGAAGGAAAAAAGCGAACAAGGCAGGAA
*
28213681 GG-AGAAAAAAA
1 GGAAGGAAAAAA
28213692 TAGTTGGGAG
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
27 8 0.24
28 26 0.76
ACGTcount: A:0.54, C:0.06, G:0.37, T:0.03
Consensus pattern (28 bp):
GGAAGGAAAAAAGCGAACAAGGCAGGAA
Found at i:28215040 original size:2 final size:2
Alignment explanation
Indices: 28215033--28215064 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
28215023 AATAATAAAC
28215033 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
28215065 TCAAGCCTCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:28216167 original size:21 final size:21
Alignment explanation
Indices: 28216130--28216169 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
28216120 AAAATGAAAA
*
28216130 ATATCACATAGTTATGTTATT
1 ATATCACATAGTCATGTTATT
28216151 ATATCACATTAG-CATGTTA
1 ATATCACA-TAGTCATGTTA
28216170 CTATTATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.35, C:0.12, G:0.10, T:0.42
Consensus pattern (21 bp):
ATATCACATAGTCATGTTATT
Found at i:28216654 original size:19 final size:20
Alignment explanation
Indices: 28216624--28216661 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
28216614 AAAAAATATT
28216624 AAAATCCAAATCAACAATAA
1 AAAATCCAAATCAACAATAA
28216644 AAAATCC-AATCAACAATA
1 AAAATCCAAATCAACAATA
28216662 TTTTATCCAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.63, C:0.21, G:0.00, T:0.16
Consensus pattern (20 bp):
AAAATCCAAATCAACAATAA
Found at i:28216839 original size:26 final size:27
Alignment explanation
Indices: 28216810--28216873 Score: 85
Period size: 29 Copynumber: 2.3 Consensus size: 27
28216800 ATAATGATTT
* *
28216810 ATTTGATTTAATG-TAAAAATATAAGA
1 ATTTAATTAAATGATAAAAATATAAGA
28216836 ATTTAATTAAATGTAATAAAAATATAAGA
1 ATTTAATTAAATG--ATAAAAATATAAGA
28216865 ATTTAATTA
1 ATTTAATTA
28216874 CTTTTTTTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
26 11 0.33
29 22 0.67
ACGTcount: A:0.53, C:0.00, G:0.08, T:0.39
Consensus pattern (27 bp):
ATTTAATTAAATGATAAAAATATAAGA
Found at i:28221561 original size:2 final size:2
Alignment explanation
Indices: 28221554--28221592 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
28221544 TCAACTTTCA
28221554 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
28221593 TTTCAGTAGG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:28224872 original size:2 final size:2
Alignment explanation
Indices: 28224867--28224892 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
28224857 TTTTTAATTG
28224867 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
28224893 GTATGTATGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:28227891 original size:17 final size:17
Alignment explanation
Indices: 28227878--28227910 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
28227868 GTGTTTTTTT
28227878 TTTATGTTTGTTTTCTC
1 TTTATGTTTGTTTTCTC
*
28227895 TTTATGTTTATTTTCT
1 TTTATGTTTGTTTTCT
28227911 TATTTTGAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.09, C:0.09, G:0.09, T:0.73
Consensus pattern (17 bp):
TTTATGTTTGTTTTCTC
Found at i:28231196 original size:3 final size:3
Alignment explanation
Indices: 28231188--28231235 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
28231178 TATTACGTCG
28231188 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
28231236 GTGTCTATAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:28232620 original size:75 final size:73
Alignment explanation
Indices: 28232465--28232606 Score: 187
Period size: 73 Copynumber: 1.9 Consensus size: 73
28232455 AAACCTATAC
* * *
28232465 TTATAAATATGTATTCATTAAATAACAATTATTGAAATATTTTTATTATAATTATTTGTAAGATT
1 TTATAAATATGTATTCATCAAATAACAATAATTGAAATATTTTTATTATAATTATTAGTAAGATT
28232530 TAAACCTA
66 TAAACCTA
* * **
28232538 TTATAAATGTGTATTCATCAAATGATGATAATTGAAATATTTTT-TTATTAGACTTATTAGTAAG
1 TTATAAATATGTATTCATCAAATAACAATAATTGAAATATTTTTATTA-TA-A-TTATTAGTAAG
28232602 ATTTA
63 ATTTA
28232607 TTCTATTTAT
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
72 3 0.05
73 40 0.68
74 1 0.02
75 15 0.25
ACGTcount: A:0.40, C:0.05, G:0.08, T:0.46
Consensus pattern (73 bp):
TTATAAATATGTATTCATCAAATAACAATAATTGAAATATTTTTATTATAATTATTAGTAAGATT
TAAACCTA
Found at i:28232777 original size:74 final size:72
Alignment explanation
Indices: 28232689--28232828 Score: 172
Period size: 74 Copynumber: 1.9 Consensus size: 72
28232679 AAATTTATAT
* * * * *
28232689 TTATAAATATGTATTTATTAAATAATAATTATTGAAATATTTTTTATTTTAATTATTAGCAAGAT
1 TTATAAATACGTATTCATCAAATAATAATCATTGAAATA--TTTTATTATAATTATTAGCAAGAT
28232754 TTAAACCTA
64 TTAAACCTA
* * * * *
28232763 TTATAAATGCGTATTCATCAAATGATAATCATTTAAATATTTTATTATGATTATTAGTAAGATTT
1 TTATAAATACGTATTCATCAAATAATAATCATTGAAATATTTTATTATAATTATTAGCAAGATTT
28232828 A
66 A
28232829 TTTCATTTAA
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
72 24 0.43
74 32 0.57
ACGTcount: A:0.41, C:0.05, G:0.07, T:0.47
Consensus pattern (72 bp):
TTATAAATACGTATTCATCAAATAATAATCATTGAAATATTTTATTATAATTATTAGCAAGATTT
AAACCTA
Found at i:28232957 original size:36 final size:35
Alignment explanation
Indices: 28232911--28232996 Score: 104
Period size: 35 Copynumber: 2.4 Consensus size: 35
28232901 GTTGTATAAT
28232911 TTAAATATTAATATTTTA-AGATTAATTATTTTAAAG
1 TTAAATATTAATATTTTATAGATTAA-TATTTT-AAG
***
28232947 TTAAATATTAAT-TTTTATTTTTTTAATATTTTAAG
1 TTAAATATTAATATTTTA-TAGATTAATATTTTAAG
28232982 TTAAATATTAATATT
1 TTAAATATTAATATT
28232997 CATCAAACTT
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
35 20 0.45
36 20 0.45
37 4 0.09
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (35 bp):
TTAAATATTAATATTTTATAGATTAATATTTTAAG
Found at i:28234609 original size:26 final size:26
Alignment explanation
Indices: 28234579--28234708 Score: 106
Period size: 26 Copynumber: 5.0 Consensus size: 26
28234569 TTTTAATTAA
28234579 GGATAATTTTGCCACTAA-AAGTGGAT
1 GGATAATTTTGCCAC-AAGAAGTGGAT
* ** *
28234605 GGATAATTTTACCATC-AGAA-TCTAA
1 GGATAATTTTGCCA-CAAGAAGTGGAT
* * *
28234630 GAATAATTTTGTCACAAGAAATGGAT
1 GGATAATTTTGCCACAAGAAGTGGAT
*
28234656 AGG-TAATTTTGCCACAAGAAGTAGAT
1 -GGATAATTTTGCCACAAGAAGTGGAT
* * *
28234682 GGATAATTTTACCACCAGAAGTTGAT
1 GGATAATTTTGCCACAAGAAGTGGAT
28234708 G
1 G
28234709 TACACCTTAA
Statistics
Matches: 81, Mismatches: 17, Indels: 12
0.74 0.15 0.11
Matches are distributed among these distances:
24 1 0.01
25 20 0.25
26 58 0.72
27 2 0.02
ACGTcount: A:0.38, C:0.12, G:0.20, T:0.30
Consensus pattern (26 bp):
GGATAATTTTGCCACAAGAAGTGGAT
Found at i:28234807 original size:28 final size:27
Alignment explanation
Indices: 28234746--28234821 Score: 91
Period size: 28 Copynumber: 2.7 Consensus size: 27
28234736 AGTGGATCAC
28234746 CCACCAAAAGTGGATAAATACTTGTAA
1 CCACCAAAAGTGGATAAATACTTGTAA
*
28234773 CCTACCAAAAGTAGATAAATACTT-TCAA
1 CC-ACCAAAAGTGGATAAATACTTGT-AA
* *
28234801 TCCACCAGAAGTGGATGAATA
1 -CCACCAAAAGTGGATAAATA
28234822 ATGAAAAAGA
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
27 3 0.07
28 37 0.88
29 2 0.05
ACGTcount: A:0.43, C:0.20, G:0.14, T:0.22
Consensus pattern (27 bp):
CCACCAAAAGTGGATAAATACTTGTAA
Found at i:28241561 original size:13 final size:13
Alignment explanation
Indices: 28241543--28241567 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
28241533 AGAGAAATTG
28241543 TGATTTTATAAAA
1 TGATTTTATAAAA
28241556 TGATTTTATAAA
1 TGATTTTATAAA
28241568 TTTTCTGAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TGATTTTATAAAA
Found at i:28248655 original size:13 final size:13
Alignment explanation
Indices: 28248637--28248661 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
28248627 AGAGAAATTG
28248637 TGATTTTATAAAA
1 TGATTTTATAAAA
28248650 TGATTTTATAAA
1 TGATTTTATAAA
28248662 TTTTTTGAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TGATTTTATAAAA
Found at i:28255538 original size:2 final size:2
Alignment explanation
Indices: 28255533--28255582 Score: 73
Period size: 2 Copynumber: 25.0 Consensus size: 2
28255523 ACAACAAAAG
* *
28255533 GA GA GA GA GA GA GA GA GA GA CA GA GA GA CA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
*
28255575 GC GA GA GA
1 GA GA GA GA
28255583 AGGGCAGGTC
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.48, C:0.06, G:0.46, T:0.00
Consensus pattern (2 bp):
GA
Found at i:28260948 original size:2 final size:2
Alignment explanation
Indices: 28260943--28260990 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
28260933 GGAGATGGGA
28260943 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
28260985 AT AT AT
1 AT AT AT
28260991 TTACAGTGAG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:28261777 original size:24 final size:25
Alignment explanation
Indices: 28261737--28261792 Score: 71
Period size: 24 Copynumber: 2.3 Consensus size: 25
28261727 CCCAAACAGA
*
28261737 AAGAGGAA-GAGGGAATAAGAGAGAG
1 AAGA-GAAGGAGGAAATAAGAGAGAG
*
28261762 AA-AGAAGGAGGAAATATGAGAGAG
1 AAGAGAAGGAGGAAATAAGAGAGAG
28261786 AAGAGAA
1 AAGAGAA
28261793 AAAAGTAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
23 3 0.11
24 18 0.67
25 6 0.22
ACGTcount: A:0.55, C:0.00, G:0.39, T:0.05
Consensus pattern (25 bp):
AAGAGAAGGAGGAAATAAGAGAGAG
Found at i:28263560 original size:21 final size:21
Alignment explanation
Indices: 28263512--28263560 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 21
28263502 TTATAATCAA
* *
28263512 TATCTAT-ATCAATCTATATC
1 TATCTATCAACAATCTAAATC
*
28263532 TATTTATCAACAATCTAAATC
1 TATCTATCAACAATCTAAATC
*
28263553 TGTCTATC
1 TATCTATC
28263561 TATCTATCTA
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
20 6 0.26
21 17 0.74
ACGTcount: A:0.35, C:0.20, G:0.02, T:0.43
Consensus pattern (21 bp):
TATCTATCAACAATCTAAATC
Found at i:28266618 original size:15 final size:15
Alignment explanation
Indices: 28266597--28266638 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 15
28266587 AAAACTTTAG
28266597 TAAAAAAAACCTTGC-
1 TAAAAAAAACCTT-CA
28266612 TAGAAAAAAA-CTTCA
1 TA-AAAAAAACCTTCA
28266627 TAAAAAAAACCT
1 TAAAAAAAACCT
28266639 AGCGAAGAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
14 8 0.33
15 9 0.38
16 7 0.29
ACGTcount: A:0.60, C:0.17, G:0.05, T:0.19
Consensus pattern (15 bp):
TAAAAAAAACCTTCA
Found at i:28267588 original size:53 final size:49
Alignment explanation
Indices: 28267492--28267589 Score: 126
Period size: 53 Copynumber: 1.9 Consensus size: 49
28267482 CCTTGATGCT
*
28267492 GGAGATGAAAAAGAAAAAAAAGCTAAACAAAAGAGTAGTCCTTGACGTA
1 GGAGATGAAAAAGAAAAAAAAGCTAAACAAAAGAGTAGCCCTTGACGTA
*
28267541 GGAGAATGAAAAAGAAAAAAAAATGCTAAATGAAGAA-AGTAGCCCTTGA
1 GGAG-ATGAAAAAG-AAAAAAAA-GCTAAA-CAA-AAGAGTAGCCCTTGA
28267590 TACTGTGAGC
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
49 4 0.10
50 9 0.21
51 8 0.19
52 6 0.14
53 13 0.31
54 2 0.05
ACGTcount: A:0.54, C:0.09, G:0.22, T:0.14
Consensus pattern (49 bp):
GGAGATGAAAAAGAAAAAAAAGCTAAACAAAAGAGTAGCCCTTGACGTA
Found at i:28268310 original size:15 final size:17
Alignment explanation
Indices: 28268278--28268311 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
28268268 ATTACAAAAT
28268278 AAAATATTAATATTTTA
1 AAAATATTAATATTTTA
28268295 AAAATATT-AT-TTTTA
1 AAAATATTAATATTTTA
28268310 AA
1 AA
28268312 TTATTAAGTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.41
16 2 0.12
17 8 0.47
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
AAAATATTAATATTTTA
Found at i:28269790 original size:2 final size:2
Alignment explanation
Indices: 28269783--28269837 Score: 94
Period size: 2 Copynumber: 28.0 Consensus size: 2
28269773 AATAAACATT
*
28269783 TA TA TA TA TA TA T- TA AA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
28269824 TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA
28269838 ACTATTGGTT
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
1 1 0.02
2 49 0.98
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:28272715 original size:2 final size:2
Alignment explanation
Indices: 28272641--28272699 Score: 93
Period size: 2 Copynumber: 30.0 Consensus size: 2
28272631 ATTTCAATAG
*
28272641 AT AT AG AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
28272683 -T AT AT AT AT GT AT AT AT
1 AT AT AT AT AT AT AT AT AT
28272700 TGTTTGNTAT
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
1 1 0.02
2 51 0.98
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
AT
Found at i:28272715 original size:24 final size:23
Alignment explanation
Indices: 28272662--28272729 Score: 70
Period size: 24 Copynumber: 3.0 Consensus size: 23
28272652 TATATATATA
* * *
28272662 TATATATATATATAT-ATATAT-
1 TATATATATGTATATGATGTTTG
28272683 TATATATATGTATAT-ATTGTTTG
1 TATATATATGTATATGA-TGTTTG
28272706 NTATATATATGTATATGATGTTTG
1 -TATATATATGTATATGATGTTTG
28272730 GCATCAGGCT
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
21 15 0.38
22 3 0.08
24 21 0.52
25 1 0.03
ACGTcount: A:0.35, C:0.00, G:0.10, T:0.53
Consensus pattern (23 bp):
TATATATATGTATATGATGTTTG
Found at i:28280087 original size:2 final size:2
Alignment explanation
Indices: 28280080--28280115 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
28280070 GTATTGTGTC
*
28280080 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
28280116 GCTTTATCGA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:28287182 original size:13 final size:13
Alignment explanation
Indices: 28287164--28287198 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
28287154 GGTACATAAT
28287164 AATAATAAACAAC
1 AATAATAAACAAC
*
28287177 AATAATAAACAAT
1 AATAATAAACAAC
*
28287190 AATACTAAA
1 AATAATAAA
28287199 TCAATTTTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.69, C:0.11, G:0.00, T:0.20
Consensus pattern (13 bp):
AATAATAAACAAC
Found at i:28287960 original size:29 final size:29
Alignment explanation
Indices: 28287918--28287992 Score: 132
Period size: 29 Copynumber: 2.6 Consensus size: 29
28287908 AATATAGATC
*
28287918 AAAGTCAATAACCAATATCTAGAACAAAT
1 AAAGTCAATAACCAATATCTAGAAAAAAT
28287947 AAAGTCAATAACCAATATCTAGAAAAAAT
1 AAAGTCAATAACCAATATCTAGAAAAAAT
*
28287976 AAAGTCAATAACTAATA
1 AAAGTCAATAACCAATA
28287993 AGAAGTGATC
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.57, C:0.15, G:0.07, T:0.21
Consensus pattern (29 bp):
AAAGTCAATAACCAATATCTAGAAAAAAT
Found at i:28288265 original size:16 final size:17
Alignment explanation
Indices: 28288246--28288289 Score: 54
Period size: 19 Copynumber: 2.5 Consensus size: 17
28288236 AATTTTTTAA
28288246 TTAAATAAAA-AATTAT
1 TTAAATAAAATAATTAT
28288262 TTAAGAATAAAATAATTAT
1 TT-A-AATAAAATAATTAT
*
28288281 TTTAATAAA
1 TTAAATAAA
28288290 TTTTTTATGA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
16 2 0.08
17 7 0.29
18 7 0.29
19 8 0.33
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (17 bp):
TTAAATAAAATAATTAT
Found at i:28288891 original size:17 final size:17
Alignment explanation
Indices: 28288869--28288903 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
28288859 TATATATATA
28288869 TATATATATATTTGGCT
1 TATATATATATTTGGCT
28288886 TATATATATATTTGGCT
1 TATATATATATTTGGCT
28288903 T
1 T
28288904 TGTAGGAAGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.29, C:0.06, G:0.11, T:0.54
Consensus pattern (17 bp):
TATATATATATTTGGCT
Found at i:28288896 original size:2 final size:2
Alignment explanation
Indices: 28288850--28288879 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
28288840 TTTATTAGCC
28288850 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
28288880 TTGGCTTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:28289270 original size:2 final size:2
Alignment explanation
Indices: 28289263--28289306 Score: 74
Period size: 2 Copynumber: 23.0 Consensus size: 2
28289253 ACAAACCATA
28289263 AT AT AT AT AT AT AT -T AT AT AT AT AT A- AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
28289303 AT AT
1 AT AT
28289307 TTCTTTTGNA
Statistics
Matches: 40, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
1 2 0.05
2 38 0.95
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:28289282 original size:13 final size:12
Alignment explanation
Indices: 28289263--28289306 Score: 74
Period size: 11 Copynumber: 3.8 Consensus size: 12
28289253 ACAAACCATA
28289263 ATATATATATAT
1 ATATATATATAT
28289275 AT-TATATATAT
1 ATATATATATAT
28289286 ATA-ATATATAT
1 ATATATATATAT
28289297 ATATATATAT
1 ATATATATAT
28289307 TTCTTTTGNA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
11 22 0.73
12 8 0.27
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (12 bp):
ATATATATATAT
Found at i:28289725 original size:2 final size:2
Alignment explanation
Indices: 28289708--28289751 Score: 63
Period size: 2 Copynumber: 22.5 Consensus size: 2
28289698 TATGTTTCGG
* *
28289708 TA TA -A TA TA GA TA TA TA TA TA TA TA GA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
28289749 TA T
1 TA T
28289752 TTATGTCCTT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
1 1 0.03
2 36 0.97
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (2 bp):
TA
Found at i:28289733 original size:16 final size:16
Alignment explanation
Indices: 28289708--28289748 Score: 75
Period size: 16 Copynumber: 2.6 Consensus size: 16
28289698 TATGTTTCGG
28289708 TATA-ATATAGATATA
1 TATATATATAGATATA
28289723 TATATATATAGATATA
1 TATATATATAGATATA
28289739 TATATATATA
1 TATATATATA
28289749 TATTTATGTC
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 4 0.16
16 21 0.84
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (16 bp):
TATATATATAGATATA
Found at i:28291510 original size:17 final size:18
Alignment explanation
Indices: 28291488--28291524 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
28291478 AAGCTGACAG
28291488 TTTTTTTGT-TTTTAATT
1 TTTTTTTGTATTTTAATT
28291505 TTTTTTTGTAGTTTTAATT
1 TTTTTTTGTA-TTTTAATT
28291524 T
1 T
28291525 CATTCTTTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 9 0.50
19 9 0.50
ACGTcount: A:0.14, C:0.00, G:0.08, T:0.78
Consensus pattern (18 bp):
TTTTTTTGTATTTTAATT
Found at i:28298693 original size:14 final size:14
Alignment explanation
Indices: 28298661--28298694 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
28298651 AGGCATGAAA
28298661 GGTGTGGTAAATAT
1 GGTGTGGTAAATAT
* *
28298675 AGTGTGGTAAATGT
1 GGTGTGGTAAATAT
28298689 GGTGTG
1 GGTGTG
28298695 ATAGTTGAGG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.41, T:0.35
Consensus pattern (14 bp):
GGTGTGGTAAATAT
Found at i:28306381 original size:12 final size:12
Alignment explanation
Indices: 28306361--28306399 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
28306351 TTTTCAACCA
28306361 CAACATCTTTTT
1 CAACATCTTTTT
* *
28306373 CAGCATCTTTCT
1 CAACATCTTTTT
*
28306385 CAACTTCTTTTT
1 CAACATCTTTTT
28306397 CAA
1 CAA
28306400 TGTCTTTTTT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.23, C:0.28, G:0.03, T:0.46
Consensus pattern (12 bp):
CAACATCTTTTT
Found at i:28309151 original size:83 final size:83
Alignment explanation
Indices: 28309009--28309500 Score: 723
Period size: 83 Copynumber: 5.9 Consensus size: 83
28308999 TAACATGTAT
* * * *
28309009 GTCACTCACTTTCCCCAAATTTCTCTACTTTGCTTCCCCTTCTTTTGCCGAAAGTAGAGGCTTGT
1 GTCACTCACTTTCCCCAAATCTCTCTACTTTGCTTCCCCTTCTTGTGCCGAGAGCAGAGGCTTGT
28309074 TGCTGCCAATCTCCATGC
66 TGCTGCCAATCTCCATGC
* * *
28309092 ATCACTCACTTTCCCCAAATCTCTCTATTTTGCTTCCCCTTCTTGTGCTGAGAGCAGAGGCTTGT
1 GTCACTCACTTTCCCCAAATCTCTCTACTTTGCTTCCCCTTCTTGTGCCGAGAGCAGAGGCTTGT
*
28309157 TGCTGCCAATCTCCGTGC
66 TGCTGCCAATCTCCATGC
*
28309175 GTCACTCACTTTCCCCAAATCTCTCTACTTTGCTTCCCCTTCTCGTGCCGAGAGCAGAGGCTTGT
1 GTCACTCACTTTCCCCAAATCTCTCTACTTTGCTTCCCCTTCTTGTGCCGAGAGCAGAGGCTTGT
*
28309240 TGCTACCAATCTCCATGC
66 TGCTGCCAATCTCCATGC
* *
28309258 GTCGCTCACTTTCCCCAAATCTCTCTACTTTGCTTCCCCTTCTCGTGCCGAGAGCAGAGGCTTGT
1 GTCACTCACTTTCCCCAAATCTCTCTACTTTGCTTCCCCTTCTTGTGCCGAGAGCAGAGGCTTGT
*
28309323 TGCTACCAATCTCCATGC
66 TGCTGCCAATCTCCATGC
* * * * * *
28309341 GTCGCTCACTGTCCCCAAATCTCTCTACTTTACTTCCCCTTCTTGTGCTGAAAGTAGAGGCTTGT
1 GTCACTCACTTTCCCCAAATCTCTCTACTTTGCTTCCCCTTCTTGTGCCGAGAGCAGAGGCTTGT
*
28309406 TGCTGCCAATCTCCGTGC
66 TGCTGCCAATCTCCATGC
* * * * * * *
28309424 ATCGCCCACTTTCCCCAAATCTCTCTACTTTGCTTCCCCTTCTTGTGTCGAGACCAAAGGCTTTT
1 GTCACTCACTTTCCCCAAATCTCTCTACTTTGCTTCCCCTTCTTGTGCCGAGAGCAGAGGCTTGT
* *
28309489 TGTTGCGAATCT
66 TGCTGCCAATCT
28309501 TGACTTTAGT
Statistics
Matches: 373, Mismatches: 36, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
83 373 1.00
ACGTcount: A:0.16, C:0.34, G:0.16, T:0.34
Consensus pattern (83 bp):
GTCACTCACTTTCCCCAAATCTCTCTACTTTGCTTCCCCTTCTTGTGCCGAGAGCAGAGGCTTGT
TGCTGCCAATCTCCATGC
Found at i:28314412 original size:21 final size:22
Alignment explanation
Indices: 28314388--28314428 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
28314378 CTTAGGTGGA
28314388 AAAATTCAAAGAAA-AAGTGTG
1 AAAATTCAAAGAAACAAGTGTG
* *
28314409 AAAATTTAATGAAACAAGTG
1 AAAATTCAAAGAAACAAGTG
28314429 AAAAAAAGGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.56, C:0.05, G:0.17, T:0.22
Consensus pattern (22 bp):
AAAATTCAAAGAAACAAGTGTG
Found at i:28314434 original size:22 final size:21
Alignment explanation
Indices: 28314387--28314434 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
28314377 ACTTAGGTGG
*
28314387 AAAAATTCAAAGAAAAAGTGT
1 AAAAATTCAAAGAAAAAGTGA
* * *
28314408 GAAAATTTAATGAAACAAGTGA
1 AAAAATTCAAAGAAA-AAGTGA
28314430 AAAAA
1 AAAAA
28314435 AGGTAAAATT
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
21 12 0.57
22 9 0.43
ACGTcount: A:0.62, C:0.04, G:0.15, T:0.19
Consensus pattern (21 bp):
AAAAATTCAAAGAAAAAGTGA
Found at i:28320518 original size:13 final size:13
Alignment explanation
Indices: 28320500--28320524 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
28320490 GGAAAATGAG
28320500 ATTTTATAAAATA
1 ATTTTATAAAATA
28320513 ATTTTATAAAAT
1 ATTTTATAAAAT
28320525 TTTTAAAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
ATTTTATAAAATA
Found at i:28322188 original size:16 final size:17
Alignment explanation
Indices: 28322156--28322188 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
28322146 ATTTAGGTAA
*
28322156 AATATGAAAACATTTTT
1 AATAAGAAAACATTTTT
28322173 AATAAGAAAA-ATTTTT
1 AATAAGAAAACATTTTT
28322189 GCTGATGCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.52, C:0.03, G:0.06, T:0.39
Consensus pattern (17 bp):
AATAAGAAAACATTTTT
Found at i:28324746 original size:629 final size:628
Alignment explanation
Indices: 28323549--28324805 Score: 2505
Period size: 629 Copynumber: 2.0 Consensus size: 628
28323539 TTTATATTTA
28323549 AAATGTTTAACTTAGTTTTTCATATTTGAATGTAATTGTTAACAAATTTTATTTTATACAGCAGT
1 AAATGTTTAACTTAGTTTTTCATATTTGAATGTAATTGTTAACAAATTTTATTTTATACAGCAGT
28323614 GGAAATTACTCTTGATTGTTATATTCTATGACACTTAGGATTACAAAATGACGGGAGATCGATCT
66 GGAAATTACTCTTGATTGTTATATTCTATGACACTTAGGATTACAAAATGACGGGAGATCGATCT
28323679 TGGATGTATCGTCCCTTAACTTCTGATGGATTCGTTAGAGATGAATTTGTAAATGGAGTTAATGA
131 TGGATGTATCGTCCCTTAACTTCTGATGGATTCGTTAGAGATGAATTTGTAAATGGAGTTAATGA
28323744 ATTCATTCATTTTACACGTTCTAACTCTACATTTACGTGGGAGAATAAAATCAAATGCTCTTGCT
196 ATTCATTCATTTTACACGTTCTAACTCTACATTTACGTGGGAGAATAAAATCAAATGCTCTTGCT
28323809 CCCGATGTAGTAACAACAAGTTTCTAAATTTTGATAAGGTAACAGAGCACATCCTTAAAAAGGGT
261 CCCGATGTAGTAACAACAAGTTTCTAAATTTTGATAAGGTAACAGAGCACATCCTTAAAAAGGGT
28323874 TTTACTGGTGCTTACACAATTTAGAGTTTACATGGGGAACATGATGTTGGACAATCATCAAGAAG
326 TTTACTGGTGCTTACACAATTTAGAGTTTACATGGGGAACATGATGTTGGACAATCATCAAGAAG
28323939 TAGATATAAAGTTGAACCATATGCTAGTAATGAGGTACATGGGGAATATGGAGAACCTACATATG
391 TAGATATAAAGTTGAACCATATGCTAGTAATGAGGTACATGGGGAATATGGAGAACCTACATATG
28324004 AAGAGGAAATAGAAAATCCATATACTAGAATGGTTAAGTATCTTTTACTTAAATGTTTGTGGAAG
456 AAGAGGAAATAGAAAATCCATATACTAGAATGGTTAAGTATCTTTTACTTAAATGTTTGTGGAAG
28324069 AAGATCCAAATCCAAATGCAGCTAGCTTTTACTTGTTGTTAAGTAATGCAGAGGAACTTTTGTGG
521 AAGATCCAAATCCAAATGCAGCTAGCTTTTACTTGTTGTTAAGTAATGCAGAGGAACTTTTGTGG
28324134 TTAGGTTGCACAAAGCACACAAAGCTTTCAGTTGTGTCGCAAC
586 TTAGGTTGCACAAAGCACACAAAGCTTTCAGTTGTGTCGCAAC
28324177 NAAATGTTTAACTTAGTTTTTCATATTTGAATGTAATTGTTAACAAATTTTATTTTATACAGCAG
1 -AAATGTTTAACTTAGTTTTTCATATTTGAATGTAATTGTTAACAAATTTTATTTTATACAGCAG
28324242 TGGAAATTACTCTTGATTGTTATATTCTATGACACTTAGGATTACAAAATGACGGGAGATCGATC
65 TGGAAATTACTCTTGATTGTTATATTCTATGACACTTAGGATTACAAAATGACGGGAGATCGATC
28324307 TTGGATGTATCGTCCCTTAACTTCTGATGGATTCGTTAGAGATGAATTTGTAAATGGAGTTAATG
130 TTGGATGTATCGTCCCTTAACTTCTGATGGATTCGTTAGAGATGAATTTGTAAATGGAGTTAATG
28324372 AATTCATTCATTTTACACGTTCTAACTCTACATTTACGTGGGAGAATAAAATCAAATGCTCTTGC
195 AATTCATTCATTTTACACGTTCTAACTCTACATTTACGTGGGAGAATAAAATCAAATGCTCTTGC
28324437 TCCCGATGTAGTAACAACAAGTTTCTAAATTTTGATAAGGTAACAGAGCACATCCTTAAAAAGGG
260 TCCCGATGTAGTAACAACAAGTTTCTAAATTTTGATAAGGTAACAGAGCACATCCTTAAAAAGGG
28324502 TTTTACTGGTGCTTACACAATTTAGAGTTTACATGGGGAACATGATGTTGGACAATCATCAAGAA
325 TTTTACTGGTGCTTACACAATTTAGAGTTTACATGGGGAACATGATGTTGGACAATCATCAAGAA
28324567 GTAGATATAAAGTTGAACCATATGCTAGTAATGAGGTACATGGGGAATATGGAGAACCTACATAT
390 GTAGATATAAAGTTGAACCATATGCTAGTAATGAGGTACATGGGGAATATGGAGAACCTACATAT
28324632 GAAGAGGAAATAGAAAATCCATATACTAGAATGGTTAAGTATCTTTTACTTAAATGTTTGTGGAA
455 GAAGAGGAAATAGAAAATCCATATACTAGAATGGTTAAGTATCTTTTACTTAAATGTTTGTGGAA
28324697 GAAGATCCAAATCCAAATGCAGCTAGCTTTTACTTGTTGTTAAGTAATGCAGAGGAACTTTTGTG
520 GAAGATCCAAATCCAAATGCAGCTAGCTTTTACTTGTTGTTAAGTAATGCAGAGGAACTTTTGTG
28324762 GTTAGGTTGCACAAAGCACACAAAGCTTTCAGTTGTGTCGCAAC
585 GTTAGGTTGCACAAAGCACACAAAGCTTTCAGTTGTGTCGCAAC
28324806 TTTTAAATGT
Statistics
Matches: 628, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
629 628 1.00
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.33
Consensus pattern (628 bp):
AAATGTTTAACTTAGTTTTTCATATTTGAATGTAATTGTTAACAAATTTTATTTTATACAGCAGT
GGAAATTACTCTTGATTGTTATATTCTATGACACTTAGGATTACAAAATGACGGGAGATCGATCT
TGGATGTATCGTCCCTTAACTTCTGATGGATTCGTTAGAGATGAATTTGTAAATGGAGTTAATGA
ATTCATTCATTTTACACGTTCTAACTCTACATTTACGTGGGAGAATAAAATCAAATGCTCTTGCT
CCCGATGTAGTAACAACAAGTTTCTAAATTTTGATAAGGTAACAGAGCACATCCTTAAAAAGGGT
TTTACTGGTGCTTACACAATTTAGAGTTTACATGGGGAACATGATGTTGGACAATCATCAAGAAG
TAGATATAAAGTTGAACCATATGCTAGTAATGAGGTACATGGGGAATATGGAGAACCTACATATG
AAGAGGAAATAGAAAATCCATATACTAGAATGGTTAAGTATCTTTTACTTAAATGTTTGTGGAAG
AAGATCCAAATCCAAATGCAGCTAGCTTTTACTTGTTGTTAAGTAATGCAGAGGAACTTTTGTGG
TTAGGTTGCACAAAGCACACAAAGCTTTCAGTTGTGTCGCAAC
Found at i:28326948 original size:90 final size:90
Alignment explanation
Indices: 28326795--28326975 Score: 308
Period size: 90 Copynumber: 2.0 Consensus size: 90
28326785 GAACAAGATT
28326795 AAATCAAGTGCCACGTAATGATGATGGGGGAGATGTGGACTCTCTTGATCATCTTTCAATTTTCA
1 AAATCAAGTGCCACGTAATGATGATGGGGGAGATGTGGACTCTCTTGATCATCTTTCAATTTTCA
* *
28326860 TTCATCCTGGGCGAGCTTTTGGTCC
66 CTCATCCTCGGCGAGCTTTTGGTCC
*
28326885 AAATCAAGTGCCACTTAATGATGATGGGGGAGATGTGGACTCTCTTGATCATCTTTCAATTTTCA
1 AAATCAAGTGCCACGTAATGATGATGGGGGAGATGTGGACTCTCTTGATCATCTTTCAATTTTCA
* * *
28326950 CTCATCTTCGGTGAGTTTTTGGTCC
66 CTCATCCTCGGCGAGCTTTTGGTCC
28326975 A
1 A
28326976 TTAGATAAAT
Statistics
Matches: 85, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
90 85 1.00
ACGTcount: A:0.23, C:0.19, G:0.23, T:0.35
Consensus pattern (90 bp):
AAATCAAGTGCCACGTAATGATGATGGGGGAGATGTGGACTCTCTTGATCATCTTTCAATTTTCA
CTCATCCTCGGCGAGCTTTTGGTCC
Found at i:28328005 original size:15 final size:14
Alignment explanation
Indices: 28327985--28328042 Score: 55
Period size: 15 Copynumber: 3.9 Consensus size: 14
28327975 AAGATGAAGA
28327985 AGATGACATGCAAAG
1 AGATGACATG-AAAG
*
28328000 AGATGAAGATG-AAG
1 AGATG-ACATGAAAG
28328014 AAGATGACATGGAAAG
1 -AGATGACAT-GAAAG
28328030 AGATGACAATGAA
1 AGATGAC-ATGAA
28328043 GATGAAGATG
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 6 0.17
15 21 0.58
16 9 0.25
ACGTcount: A:0.50, C:0.07, G:0.29, T:0.14
Consensus pattern (14 bp):
AGATGACATGAAAG
Found at i:28328007 original size:30 final size:30
Alignment explanation
Indices: 28327973--28328044 Score: 119
Period size: 30 Copynumber: 2.4 Consensus size: 30
28327963 ATCTCTTGAT
28327973 TGAAGATGAAGAAGATGACATGCAAAGAGA
1 TGAAGATGAAGAAGATGACATGCAAAGAGA
*
28328003 TGAAGATGAAGAAGATGACATGGAAAGAGA
1 TGAAGATGAAGAAGATGACATGCAAAGAGA
28328033 TGACA-ATGAAGA
1 TGA-AGATGAAGA
28328045 TGAAGATGAA
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
30 39 0.98
31 1 0.03
ACGTcount: A:0.50, C:0.06, G:0.31, T:0.14
Consensus pattern (30 bp):
TGAAGATGAAGAAGATGACATGCAAAGAGA
Found at i:28330726 original size:28 final size:28
Alignment explanation
Indices: 28330673--28330726 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
28330663 TTTCGTTGGA
* *
28330673 AATTTCCAACGGAATTCCTTTTGAAAAG
1 AATTTCCAACGGAATTCCGTTGGAAAAG
*
28330701 AATTTCCAATGGAATTCCGTTGGAAA
1 AATTTCCAACGGAATTCCGTTGGAAA
28330727 TTTCCAATAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31
Consensus pattern (28 bp):
AATTTCCAACGGAATTCCGTTGGAAAAG
Found at i:28330734 original size:24 final size:24
Alignment explanation
Indices: 28330661--28330739 Score: 77
Period size: 24 Copynumber: 3.1 Consensus size: 24
28330651 TCCAACAAAA
* *
28330661 AATTTCGTTGGAAATTTCCAACGG
1 AATTCCGTTGGAAATTTCCAATGG
* *
28330685 AATTCCTTTTGAAAAGAATTTCCAATGG
1 AATTCC-GTTG--GA-AATTTCCAATGG
*
28330713 AATTCCGTTGGAAATTTCCAATAG
1 AATTCCGTTGGAAATTTCCAATGG
28330737 AAT
1 AAT
28330740 CACAATGGGA
Statistics
Matches: 44, Mismatches: 7, Indels: 8
0.75 0.12 0.14
Matches are distributed among these distances:
24 19 0.43
25 4 0.09
27 4 0.09
28 17 0.39
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.34
Consensus pattern (24 bp):
AATTCCGTTGGAAATTTCCAATGG
Found at i:28332896 original size:17 final size:16
Alignment explanation
Indices: 28332867--28332907 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 16
28332857 CTACAAAAAC
*
28332867 ATAAAACTTAACTTAA
1 ATAAAACTAAACTTAA
28332883 ATAATAACTAAACTTAAA
1 ATAA-AACTAAACTT-AA
28332901 ATAAAAC
1 ATAAAAC
28332908 ATCATAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 4 0.18
17 12 0.55
18 6 0.27
ACGTcount: A:0.61, C:0.12, G:0.00, T:0.27
Consensus pattern (16 bp):
ATAAAACTAAACTTAA
Found at i:28339998 original size:2 final size:2
Alignment explanation
Indices: 28339993--28340024 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
28339983 GGAGCAAAAA
*
28339993 AT AT AT AT AT AT AT AT AT AT TT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
28340025 TGAGAAAACT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:28347173 original size:37 final size:37
Alignment explanation
Indices: 28347123--28347195 Score: 137
Period size: 37 Copynumber: 2.0 Consensus size: 37
28347113 CTCTATTCAT
*
28347123 TGCTTGGCTTTAATTTTGGTTTGGTTTAAAGGAACAC
1 TGCTTGGCTTTAATTTTGGTTAGGTTTAAAGGAACAC
28347160 TGCTTGGCTTTAATTTTGGTTAGGTTTAAAGGAACA
1 TGCTTGGCTTTAATTTTGGTTAGGTTTAAAGGAACA
28347196 ATACTATTGT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.23, C:0.10, G:0.25, T:0.42
Consensus pattern (37 bp):
TGCTTGGCTTTAATTTTGGTTAGGTTTAAAGGAACAC
Found at i:28357721 original size:19 final size:19
Alignment explanation
Indices: 28357699--28357736 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
28357689 AAAAGTTCTA
28357699 AAGGTTTAAAGAAGTACAT
1 AAGGTTTAAAGAAGTACAT
*
28357718 AAGGTTTAGAGAAGTACAT
1 AAGGTTTAAAGAAGTACAT
28357737 TTAAAAAGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.45, C:0.05, G:0.24, T:0.26
Consensus pattern (19 bp):
AAGGTTTAAAGAAGTACAT
Found at i:28359318 original size:22 final size:22
Alignment explanation
Indices: 28359293--28359364 Score: 74
Period size: 22 Copynumber: 3.2 Consensus size: 22
28359283 CTGCTACCAT
* *
28359293 GTTTGTTTCTGAATTGCTGCTG
1 GTTTGTTGCTGATTTGCTGCTG
* *
28359315 GTTTGGTGCTGATTTGTTGCCAT-
1 GTTTGTTGCTGATTTGCTG-C-TG
*
28359338 GTTTGTTGCTGATTTGCTACTG
1 GTTTGTTGCTGATTTGCTGCTG
28359360 GTTTG
1 GTTTG
28359365 GTGTTAATTT
Statistics
Matches: 40, Mismatches: 7, Indels: 6
0.75 0.13 0.11
Matches are distributed among these distances:
21 1 0.03
22 21 0.52
23 17 0.43
24 1 0.03
ACGTcount: A:0.08, C:0.12, G:0.29, T:0.50
Consensus pattern (22 bp):
GTTTGTTGCTGATTTGCTGCTG
Found at i:28359331 original size:90 final size:90
Alignment explanation
Indices: 28359231--28359415 Score: 237
Period size: 90 Copynumber: 2.1 Consensus size: 90
28359221 CTATTCTTGC
* * *
28359231 TGCTGATTTGTTGCCATGTCTATTGTTGATTTACTACTGATTTACTGTTGATCTGCTACCATGT-
1 TGCTGATTTGTTGCCATGTCTATTGCTGATTTACTACTGATTTACTGTTAATCTGCTACCACGTC
* **
28359295 TTGTTTCTGAATTGCTGCTGGTTTGG
66 TAGGGT-TGAATTGCTGCTGGTTTGG
* * * * ** *
28359321 TGCTGATTTGTTGCCATGTTTGTTGCTGATTTGCTACTGGTTTGGTGTTAATTTGCTACCACGTC
1 TGCTGATTTGTTGCCATGTCTATTGCTGATTTACTACTGATTTACTGTTAATCTGCTACCACGTC
28359386 TAGGGTTGAATTGCTGCTGGTTTGG
66 TAGGGTTGAATTGCTGCTGGTTTGG
28359411 TGCTG
1 TGCTG
28359416 CCATGTCTGG
Statistics
Matches: 81, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
90 78 0.96
91 3 0.04
ACGTcount: A:0.13, C:0.15, G:0.26, T:0.46
Consensus pattern (90 bp):
TGCTGATTTGTTGCCATGTCTATTGCTGATTTACTACTGATTTACTGTTAATCTGCTACCACGTC
TAGGGTTGAATTGCTGCTGGTTTGG
Found at i:28359338 original size:45 final size:45
Alignment explanation
Indices: 28359279--28359539 Score: 216
Period size: 45 Copynumber: 6.0 Consensus size: 45
28359269 GATTTACTGT
* * *
28359279 TGATCTGCTACCATGTTTGTTTCTGAATTGCTGCTGGTTTGGTGC
1 TGATTTGCTGCCATGTTTGTTGCTGAATTGCTGCTGGTTTGGTGC
* * * *
28359324 TGATTTGTTGCCATGTTTGTTGCTGATTTGCTACTGGTTTGGTGT
1 TGATTTGCTGCCATGTTTGTTGCTGAATTGCTGCTGGTTTGGTGC
* * * * * *
28359369 TAATTTGCTACCACGTCTAG-GGTTGAATTGCTGCTGG-TT--TG-
1 TGATTTGCTGCCATGT-TTGTTGCTGAATTGCTGCTGGTTTGGTGC
* * * * *
28359410 -G---TGCTGCCATGTCTGGTGCTGAATTGCTGTTGGTTTAGTGT
1 TGATTTGCTGCCATGTTTGTTGCTGAATTGCTGCTGGTTTGGTGC
* *
28359451 TGATTTGTTGCCATGTTTGTTGCTGATTTGCTGCTGGTTTGGTGC
1 TGATTTGCTGCCATGTTTGTTGCTGAATTGCTGCTGGTTTGGTGC
* * * * * *
28359496 TGATCTACTGCCATGTCTATTACTGAATTGCTGTTGGTTTGGTG
1 TGATTTGCTGCCATGTTTGTTGCTGAATTGCTGCTGGTTTGGTG
28359540 AGTAATTTGT
Statistics
Matches: 167, Mismatches: 39, Indels: 20
0.74 0.17 0.09
Matches are distributed among these distances:
36 1 0.01
37 23 0.14
38 2 0.01
40 2 0.01
42 3 0.02
44 2 0.01
45 132 0.79
46 2 0.01
ACGTcount: A:0.11, C:0.15, G:0.29, T:0.45
Consensus pattern (45 bp):
TGATTTGCTGCCATGTTTGTTGCTGAATTGCTGCTGGTTTGGTGC
Found at i:28359421 original size:82 final size:82
Alignment explanation
Indices: 28359332--28359497 Score: 190
Period size: 82 Copynumber: 2.0 Consensus size: 82
28359322 GCTGATTTGT
* * * * *
28359332 TGCCATGTTTGTTGCTGATTTGCTACTGGTTTGGTGTTAATTTGCTACCACGTCTAG-GGTTGAA
1 TGCCATGTCTGGTGCTGAATTGCTACTGGTTTAGTGTTAATTTGCTACCACGT-TAGTGGCTGAA
28359396 TTGCTGCTGGTTTGGTGC
65 TTGCTGCTGGTTTGGTGC
** * * * * * * *
28359414 TGCCATGTCTGGTGCTGAATTGCTGTTGGTTTAGTGTTGATTTGTTGCCATGTTTGTTGCTGATT
1 TGCCATGTCTGGTGCTGAATTGCTACTGGTTTAGTGTTAATTTGCTACCACGTTAGTGGCTGAAT
28359479 TGCTGCTGGTTTGGTGC
66 TGCTGCTGGTTTGGTGC
28359496 TG
1 TG
28359498 ATCTACTGCC
Statistics
Matches: 69, Mismatches: 14, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
81 2 0.03
82 67 0.97
ACGTcount: A:0.10, C:0.14, G:0.31, T:0.45
Consensus pattern (82 bp):
TGCCATGTCTGGTGCTGAATTGCTACTGGTTTAGTGTTAATTTGCTACCACGTTAGTGGCTGAAT
TGCTGCTGGTTTGGTGC
Found at i:28359496 original size:22 final size:22
Alignment explanation
Indices: 28359423--28359499 Score: 75
Period size: 22 Copynumber: 3.5 Consensus size: 22
28359413 CTGCCATGTC
* *
28359423 TGGTGCTGAATTGCTGTTGGTT
1 TGGTGCTGATTTGCTGCTGGTT
* * *
28359445 TAGTGTTGATTTGTTGCCAT-GTT
1 TGGTGCTGATTTGCTG-C-TGGTT
*
28359468 TGTTGCTGATTTGCTGCTGGTT
1 TGGTGCTGATTTGCTGCTGGTT
28359490 TGGTGCTGAT
1 TGGTGCTGAT
28359500 CTACTGCCAT
Statistics
Matches: 42, Mismatches: 10, Indels: 6
0.72 0.17 0.10
Matches are distributed among these distances:
21 1 0.02
22 25 0.60
23 15 0.36
24 1 0.02
ACGTcount: A:0.09, C:0.10, G:0.32, T:0.48
Consensus pattern (22 bp):
TGGTGCTGATTTGCTGCTGGTT
Found at i:28359506 original size:22 final size:22
Alignment explanation
Indices: 28359465--28359506 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
28359455 TTGTTGCCAT
* * *
28359465 GTTTGTTGCTGATTTGCTGCTG
1 GTTTGGTGCTGATCTACTGCTG
28359487 GTTTGGTGCTGATCTACTGC
1 GTTTGGTGCTGATCTACTGC
28359507 CATGTCTATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.07, C:0.17, G:0.31, T:0.45
Consensus pattern (22 bp):
GTTTGGTGCTGATCTACTGCTG
Found at i:28359523 original size:127 final size:127
Alignment explanation
Indices: 28359301--28359539 Score: 343
Period size: 127 Copynumber: 1.9 Consensus size: 127
28359291 ATGTTTGTTT
*
28359301 CTGAATTGCTGCTGGTTTGGTGCTGATTTGTTGCCATGTTTGTTGCTGATTTGCTACTGGTTTGG
1 CTGAATTGCTGCTGGTTTAGTGCTGATTTGTTGCCATGTTTGTTGCTGATTTGCTACTGGTTTGG
* * * **
28359366 TGTTAATTTGCTACCACGTCTAGGGTTGAATTGCTGCTGGTTTGGTGCTGCCATGTCTGGTG
66 TGCTAATCTACTACCACGTCTAGGACTGAATTGCTGCTGGTTTGGTGCTGCCATGTCTGGTG
* * *
28359428 CTGAATTGCTGTTGGTTTAGTGTTGATTTGTTGCCATGTTTGTTGCTGATTTGCTGCTGGTTTGG
1 CTGAATTGCTGCTGGTTTAGTGCTGATTTGTTGCCATGTTTGTTGCTGATTTGCTACTGGTTTGG
* * * ** *
28359493 TGCTGATCTACTGCCATGTCTATTACTGAATTGCTGTTGGTTTGGTG
66 TGCTAATCTACTACCACGTCTAGGACTGAATTGCTGCTGGTTTGGTG
28359540 AGTAATTTGT
Statistics
Matches: 97, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
127 97 1.00
ACGTcount: A:0.11, C:0.15, G:0.30, T:0.44
Consensus pattern (127 bp):
CTGAATTGCTGCTGGTTTAGTGCTGATTTGTTGCCATGTTTGTTGCTGATTTGCTACTGGTTTGG
TGCTAATCTACTACCACGTCTAGGACTGAATTGCTGCTGGTTTGGTGCTGCCATGTCTGGTG
Found at i:28359569 original size:90 final size:90
Alignment explanation
Indices: 28359413--28359576 Score: 197
Period size: 90 Copynumber: 1.8 Consensus size: 90
28359403 TGGTTTGGTG
* * * * * * *
28359413 CTGCCATGTCTGGTGCTGAATTGCTGTTGGTTTAGTGTTGATTTGTTGCCATGTTTGTTGCTGAT
1 CTGCCATGTCTAGTACTGAATTGCTGTTGGTTTAGTGGTAATTTGTTGCCATGTTTATGGCAGAT
28359478 TTGCTGCTGGTTTGGTGCTGATCTA
66 TTGCTGCTGGTTTGGTGCTGATCTA
* * *
28359503 CTGCCATGTCTATTACTGAATTGCTGTTGGTTTGGTGAGTAATTTGTTG-C-TGGTTTATGGGAG
1 CTGCCATGTCTAGTACTGAATTGCTGTTGGTTTAGTG-GTAATTTGTTGCCAT-GTTTATGGCAG
*
28359566 ATTTGTTGCTG
64 ATTTGCTGCTG
28359577 ATCTGTAGGA
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
89 1 0.02
90 51 0.84
91 9 0.15
ACGTcount: A:0.12, C:0.13, G:0.30, T:0.45
Consensus pattern (90 bp):
CTGCCATGTCTAGTACTGAATTGCTGTTGGTTTAGTGGTAATTTGTTGCCATGTTTATGGCAGAT
TTGCTGCTGGTTTGGTGCTGATCTA
Found at i:28359587 original size:22 final size:22
Alignment explanation
Indices: 28359544--28359589 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
28359534 TTGGTGAGTA
* * *
28359544 ATTTGTTGCTGGTTTATGGGAG
1 ATTTGTTGCTGATCTATAGGAG
*
28359566 ATTTGTTGCTGATCTGTAGGAG
1 ATTTGTTGCTGATCTATAGGAG
28359588 AT
1 AT
28359590 GATGGTGTTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.17, C:0.07, G:0.33, T:0.43
Consensus pattern (22 bp):
ATTTGTTGCTGATCTATAGGAG
Found at i:28364627 original size:45 final size:45
Alignment explanation
Indices: 28364554--28364727 Score: 208
Period size: 45 Copynumber: 3.9 Consensus size: 45
28364544 GCTGCTATTC
* *
28364554 TTGCTGCTGATCT-CTGCCATGTCTGTTGCTGATTTGTTGTTGAT
1 TTGCTGCTGATCTACTGCCATGTCTGTTGCTGATTTGCTGTTGGT
* * * *
28364598 TTGCTACTGATCTACTACCATGTTTGTTGCTGAATTGCTGTTGGT
1 TTGCTGCTGATCTACTGCCATGTCTGTTGCTGATTTGCTGTTGGT
* * * * *
28364643 TTGGTGCTGATTTGCTGCCATGTTTGTTGCTGATTTGCTGCTGGT
1 TTGCTGCTGATCTACTGCCATGTCTGTTGCTGATTTGCTGTTGGT
* *
28364688 TT-CGTGTTGATCTACTGCCATGTCTGTTGCTGAATTGCTG
1 TTGC-TGCTGATCTACTGCCATGTCTGTTGCTGATTTGCTG
28364728 CTAGTTTGGT
Statistics
Matches: 109, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
44 12 0.11
45 97 0.89
ACGTcount: A:0.11, C:0.18, G:0.26, T:0.45
Consensus pattern (45 bp):
TTGCTGCTGATCTACTGCCATGTCTGTTGCTGATTTGCTGTTGGT
Found at i:28364684 original size:11 final size:11
Alignment explanation
Indices: 28364580--28364685 Score: 54
Period size: 11 Copynumber: 9.5 Consensus size: 11
28364570 CCATGTCTGT
*
28364580 TGCTGATTTGT
1 TGCTGATTTGC
*
28364591 TGTTGATTTGC
1 TGCTGATTTGC
* * *
28364602 TACTGATCTAC
1 TGCTGATTTGC
* *
28364613 TACCATG-TTTGT
1 T-GC-TGATTTGC
*
28364625 TGCTGAATTGC
1 TGCTGATTTGC
* * *
28364636 TGTTGGTTTGG
1 TGCTGATTTGC
28364647 TGCTGATTTGC
1 TGCTGATTTGC
*
28364658 TGCCATG-TTTGT
1 TG-C-TGATTTGC
28364670 TGCTGATTTGC
1 TGCTGATTTGC
28364681 TGCTG
1 TGCTG
28364686 GTTTCGTGTT
Statistics
Matches: 67, Mismatches: 22, Indels: 12
0.66 0.22 0.12
Matches are distributed among these distances:
10 4 0.06
11 48 0.72
12 11 0.16
13 4 0.06
ACGTcount: A:0.11, C:0.15, G:0.26, T:0.47
Consensus pattern (11 bp):
TGCTGATTTGC
Found at i:28364699 original size:90 final size:89
Alignment explanation
Indices: 28364543--28364738 Score: 241
Period size: 90 Copynumber: 2.2 Consensus size: 89
28364533 TTGCAACACA
* * * *
28364543 TGCTGCTATTCTTGCTGCTGATCTCTGCCATGTCTGTTGCTGATTTGTTGTTGATTTGCTACTGA
1 TGCTGCTAGT-TTGGTGCTGATCTCTGCCATGTCTGTTGCTGATTTGCTGCTGATTTGCTACTGA
*
28364608 TCTACTACCATGTTTGTTGCTGAAT
65 TCTACTACCATGTCTGTTGCTGAAT
* * * * * **
28364633 TGCTGTTGGTTTGGTGCTGATTTGCTGCCATGTTTGTTGCTGATTTGCTGCTGGTTT-CGTGTTG
1 TGCTGCTAGTTTGGTGCTGATCT-CTGCCATGTCTGTTGCTGATTTGCTGCTGATTTGC-TACTG
*
28364697 ATCTACTGCCATGTCTGTTGCTGAAT
64 ATCTACTACCATGTCTGTTGCTGAAT
28364723 TGCTGCTAGTTTGGTG
1 TGCTGCTAGTTTGGTG
28364739 AGTAATTTGT
Statistics
Matches: 89, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
89 12 0.13
90 77 0.87
ACGTcount: A:0.11, C:0.18, G:0.26, T:0.45
Consensus pattern (89 bp):
TGCTGCTAGTTTGGTGCTGATCTCTGCCATGTCTGTTGCTGATTTGCTGCTGATTTGCTACTGAT
CTACTACCATGTCTGTTGCTGAAT
Found at i:28364768 original size:90 final size:90
Alignment explanation
Indices: 28364605--28364774 Score: 200
Period size: 90 Copynumber: 1.9 Consensus size: 90
28364595 GATTTGCTAC
* * * * *
28364605 TGATCTACTACCATGTTTGTTGCTGAATTGCTGTTGGTTTGGTGCTGATTTGCTGCCATGTTTGT
1 TGATCTACTACCATGTCTGTTGCTGAATTGCTGCTAGTTTGGTGCTAATTTGCTGCCATGTTTAT
* *
28364670 TGCTGATTTGCTGCTGGTTTCGTGT
66 GGCAGATTTGCTGCTGGTTTCGTGT
* * *
28364695 TGATCTACTGCCATGTCTGTTGCTGAATTGCTGCTAGTTTGGTGAGTAATTTGTTG-C-TGGTTT
1 TGATCTACTACCATGTCTGTTGCTGAATTGCTGCTAGTTTGGTG-CTAATTTGCTGCCAT-GTTT
* *
28364758 ATGGGAGATTTGTTGCT
64 ATGGCAGATTTGCTGCT
28364775 AATCTATAGA
Statistics
Matches: 66, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
89 1 0.02
90 57 0.86
91 8 0.12
ACGTcount: A:0.12, C:0.14, G:0.28, T:0.45
Consensus pattern (90 bp):
TGATCTACTACCATGTCTGTTGCTGAATTGCTGCTAGTTTGGTGCTAATTTGCTGCCATGTTTAT
GGCAGATTTGCTGCTGGTTTCGTGT
Found at i:28374333 original size:33 final size:33
Alignment explanation
Indices: 28374242--28374334 Score: 168
Period size: 33 Copynumber: 2.8 Consensus size: 33
28374232 AATACAGGAA
* *
28374242 ATTATATTAAGAAATGAAAATAAAACACATAAG
1 ATTATAATAAGAAATGAAAATAAAATACATAAG
28374275 ATTATAATAAGAAATGAAAATAAAATACATAAG
1 ATTATAATAAGAAATGAAAATAAAATACATAAG
28374308 ATTATAATAAGAAATGAAAATAAAATA
1 ATTATAATAAGAAATGAAAATAAAATA
28374335 TATATCGTTA
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 58 1.00
ACGTcount: A:0.63, C:0.03, G:0.09, T:0.25
Consensus pattern (33 bp):
ATTATAATAAGAAATGAAAATAAAATACATAAG
Found at i:28375265 original size:13 final size:13
Alignment explanation
Indices: 28375247--28375271 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
28375237 AGGAATTGGC
28375247 AAAGAATTAGAGT
1 AAAGAATTAGAGT
28375260 AAAGAATTAGAG
1 AAAGAATTAGAG
28375272 ATGGAACTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.24, T:0.20
Consensus pattern (13 bp):
AAAGAATTAGAGT
Found at i:28380410 original size:2 final size:2
Alignment explanation
Indices: 28380403--28380433 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
28380393 CATCACATAA
28380403 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
28380434 ACTATGGAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:28380687 original size:14 final size:14
Alignment explanation
Indices: 28380668--28380695 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
28380658 GCTAGAATTA
28380668 CTATTCTTTCTCAT
1 CTATTCTTTCTCAT
28380682 CTATTCTTTCTCAT
1 CTATTCTTTCTCAT
28380696 TTAACCTTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.29, G:0.00, T:0.57
Consensus pattern (14 bp):
CTATTCTTTCTCAT
Found at i:28381457 original size:12 final size:12
Alignment explanation
Indices: 28381440--28381487 Score: 50
Period size: 12 Copynumber: 4.3 Consensus size: 12
28381430 CCTTAGCTGA
28381440 TTCTCTCTCTTT
1 TTCTCTCTCTTT
*
28381452 TTCTCT-T-TCT
1 TTCTCTCTCTTT
28381462 TTCT-TC-CTTT
1 TTCTCTCTCTTT
*
28381472 TTTTCTCTCTTT
1 TTCTCTCTCTTT
28381484 TTCT
1 TTCT
28381488 TTCTTTCTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 8
0.70 0.10 0.20
Matches are distributed among these distances:
9 1 0.04
10 11 0.39
11 3 0.11
12 13 0.46
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (12 bp):
TTCTCTCTCTTT
Found at i:28381462 original size:4 final size:4
Alignment explanation
Indices: 28381455--28381540 Score: 70
Period size: 4 Copynumber: 21.8 Consensus size: 4
28381445 TCTCTTTTTC
* * *
28381455 TCTT TCTT TCTT CCTT TTTT TCTC TC-T T-TT TCTT TCTT TCTT TCTT
1 TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT
* * * *
28381501 TCCTT TCCT TCCT CCTT TC-T CCTT TCTT TCTT TCCTT TCT
1 T-CTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT T-CTT TCT
28381541 CCAAGCCGTT
Statistics
Matches: 65, Mismatches: 12, Indels: 10
0.75 0.14 0.11
Matches are distributed among these distances:
3 5 0.08
4 52 0.80
5 8 0.12
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (4 bp):
TCTT
Found at i:28381464 original size:34 final size:34
Alignment explanation
Indices: 28381422--28381504 Score: 89
Period size: 34 Copynumber: 2.4 Consensus size: 34
28381412 CTTTCATCTC
*
28381422 CTTTCTTTCCTTAGCTGATTCTCTCTCTTTTTC-T
1 CTTTCTTTCCTT-CCTGATTCTCTCTCTTTTTCTT
** *
28381456 CTTTCTTT-CTTCCTTTTTTTCTCTCTTTTTCTTT
1 CTTTCTTTCCTTCCTGATTCTCTCTCTTTTTC-TT
*
28381490 CTTTCTTTCTTTCCT
1 CTTTCTTTCCTTCCT
28381505 TTCCTTCCTC
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
32 16 0.39
33 3 0.07
34 17 0.41
35 5 0.12
ACGTcount: A:0.02, C:0.29, G:0.02, T:0.66
Consensus pattern (34 bp):
CTTTCTTTCCTTCCTGATTCTCTCTCTTTTTCTT
Found at i:28381465 original size:22 final size:21
Alignment explanation
Indices: 28381440--28381507 Score: 59
Period size: 21 Copynumber: 3.1 Consensus size: 21
28381430 CCTTAGCTGA
28381440 TTCTCTCTCTTTTTCTCTTTCT
1 TTCTCTCTCTTTTT-TCTTTCT
*
28381462 TTCT-TC-CTTTTTTTCTCTCT
1 TTCTCTCTC-TTTTTTCTTTCT
* *
28381482 TTTTCTTTCTTTCTTTCTTTCCT
1 TTCTCTCTCTTT-TTTCTTT-CT
28381505 TTC
1 TTC
28381508 CTTCCTCCTT
Statistics
Matches: 36, Mismatches: 5, Indels: 9
0.72 0.10 0.18
Matches are distributed among these distances:
20 10 0.28
21 11 0.31
22 11 0.31
23 4 0.11
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (21 bp):
TTCTCTCTCTTTTTTCTTTCT
Found at i:28381479 original size:30 final size:30
Alignment explanation
Indices: 28381443--28381501 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 30
28381433 TAGCTGATTC
28381443 TCTCTCTTTTTCTCTTTCTTTCTTCCTTTTTT
1 TCTCTC-TTTT-TCTTTCTTTCTTCCTTTTTT
*
28381475 TCTCTCTTTTTCTTTCTTTCTTTCTTT
1 TCTCTCTTTTTCTTTCTTTCTTCCTTT
28381502 CCTTTCCTTC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 16 0.62
31 4 0.15
32 6 0.23
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (30 bp):
TCTCTCTTTTTCTTTCTTTCTTCCTTTTTT
Found at i:28381484 original size:32 final size:33
Alignment explanation
Indices: 28381443--28381539 Score: 119
Period size: 32 Copynumber: 2.9 Consensus size: 33
28381433 TAGCTGATTC
**
28381443 TCTCTCTTTTTCTCTTTCTTTC-TTCCTTTTTT
1 TCTCTCTTTTTCTCTTTCTTTCTTTCCTTTCCT
28381475 TCTCTCTTTTTCTTTCTTTCTTTCTTTCCTTTCCT
1 TCTCTCTTTTTC--TCTTTCTTTCTTTCCTTTCCT
*
28381510 TC-CTC-CTTTCTCCTTTCTTTCTTTCCTTTC
1 TCTCTCTTTTTCT-CTTTCTTTCTTTCCTTTC
28381540 TCCAAGCCGT
Statistics
Matches: 58, Mismatches: 3, Indels: 8
0.84 0.04 0.12
Matches are distributed among these distances:
31 1 0.02
32 30 0.52
33 4 0.07
34 13 0.22
35 10 0.17
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (33 bp):
TCTCTCTTTTTCTCTTTCTTTCTTTCCTTTCCT
Found at i:28382182 original size:18 final size:18
Alignment explanation
Indices: 28382142--28382188 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 18
28382132 TTAATATTTT
28382142 AATATTATTTTATTCATAA
1 AATATTATTTTATTCA-AA
28382161 AATATTATTTTATTTC-AA
1 AATATTATTTTA-TTCAAA
28382179 AATATT-TTTT
1 AATATTATTTT
28382189 TTACTTGTCG
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
17 4 0.15
18 8 0.30
19 12 0.44
20 3 0.11
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.57
Consensus pattern (18 bp):
AATATTATTTTATTCAAA
Found at i:28382545 original size:13 final size:13
Alignment explanation
Indices: 28382527--28382552 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
28382517 AATCACCCAC
28382527 AATTAATGGAACA
1 AATTAATGGAACA
28382540 AATTAATGGAACA
1 AATTAATGGAACA
28382553 TGGGAAGTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.08, G:0.15, T:0.23
Consensus pattern (13 bp):
AATTAATGGAACA
Found at i:28390670 original size:28 final size:27
Alignment explanation
Indices: 28390634--28390686 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
28390624 ATATCCTGGT
*
28390634 GGTGGAAAATTACAATTTTGCCCCTGA
1 GGTGGAAAATTACAATTTTACCCCTGA
*
28390661 GGTGGCAAAATTACCATTTTACCCCT
1 GGTGG-AAAATTACAATTTTACCCCT
28390687 ATACTCCAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 5 0.22
28 18 0.78
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (27 bp):
GGTGGAAAATTACAATTTTACCCCTGA
Found at i:28390754 original size:20 final size:20
Alignment explanation
Indices: 28390731--28390776 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
28390721 CTTCTAAACC
*
28390731 TCAAATCATACT-TCAATAAG
1 TCAAATCATACTCT-AACAAG
*
28390751 TCAAATTATACTCTAACAAG
1 TCAAATCATACTCTAACAAG
28390771 TCAAAT
1 TCAAAT
28390777 GGGGTCAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 22 0.96
21 1 0.04
ACGTcount: A:0.46, C:0.20, G:0.04, T:0.30
Consensus pattern (20 bp):
TCAAATCATACTCTAACAAG
Found at i:28391590 original size:4 final size:4
Alignment explanation
Indices: 28391583--28391653 Score: 58
Period size: 4 Copynumber: 18.2 Consensus size: 4
28391573 TTTTTCTCTG
* * * *
28391583 TCTT TCTT CCTT TCTT TCTC TC-T T-TT TCTT TCTT TCCTT TCCT TCCT
1 TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT T-CTT TCTT TCTT
* *
28391630 CCTT TCTC T-TT TCTT TCTT TCTT T
1 TCTT TCTT TCTT TCTT TCTT TCTT T
28391654 TCTCCAAGTC
Statistics
Matches: 53, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
3 5 0.09
4 44 0.83
5 4 0.08
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (4 bp):
TCTT
Found at i:28391625 original size:32 final size:32
Alignment explanation
Indices: 28391567--28391653 Score: 97
Period size: 32 Copynumber: 2.6 Consensus size: 32
28391557 TAGCCGATTC
28391567 TCTCTCTTTTTCTCTGTCTTTCTTCCTT-T-CTT
1 TCTCTCTTTTTCT-T-TCTTTCTTCCTTCTCCTT
28391599 TCTCTCTTTTTCTTTCTTTCCTTTCCTTCCTCCTT
1 TCTCTCTTTTTCTTTCTTT-C-TTCCTT-CTCCTT
*
28391634 TCTCTTTTCTTTCTTTCTTT
1 TCTCTCTT-TTTCTTTCTTT
28391654 TCTCCAAGTC
Statistics
Matches: 48, Mismatches: 1, Indels: 8
0.84 0.02 0.14
Matches are distributed among these distances:
30 5 0.10
31 2 0.04
32 19 0.40
34 1 0.02
35 10 0.21
36 11 0.23
ACGTcount: A:0.00, C:0.32, G:0.01, T:0.67
Consensus pattern (32 bp):
TCTCTCTTTTTCTTTCTTTCTTCCTTCTCCTT
Found at i:28391634 original size:27 final size:28
Alignment explanation
Indices: 28391583--28391650 Score: 81
Period size: 27 Copynumber: 2.5 Consensus size: 28
28391573 TTTTTCTCTG
* *
28391583 TCTTTC-TTCCTTT-CTTTCTCTCTTTT
1 TCTTTCTTTCCTTTCCTTCCTCTCTTTC
28391609 TCTTTCTTTCCTTTCCTTCCTC-CTTTC
1 TCTTTCTTTCCTTTCCTTCCTCTCTTTC
28391636 TCTTTTCTTT-CTTTC
1 TC-TTTCTTTCCTTTC
28391651 TTTTCTCCAA
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
26 6 0.16
27 18 0.49
28 13 0.35
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (28 bp):
TCTTTCTTTCCTTTCCTTCCTCTCTTTC
Found at i:28391658 original size:27 final size:25
Alignment explanation
Indices: 28391583--28391658 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 25
28391573 TTTTTCTCTG
* *
28391583 TCTTTCTTCCTTTCTTTCTCTCTTTT
1 TCTTTCTTTCTTTCTTTCTC-CTTTC
*
28391609 TCTTTCTTTCCTTTCCTTCCTCCTTTC
1 TCTTTCTTT-CTTT-CTTTCTCCTTTC
28391636 TCTTTTCTTTCTTTCTTTTCTCC
1 TC-TTTCTTTCTTTC-TTTCTCC
28391659 AAGTCGTTCT
Statistics
Matches: 42, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
26 9 0.21
27 20 0.48
28 13 0.31
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (25 bp):
TCTTTCTTTCTTTCTTTCTCCTTTC
Found at i:28391846 original size:3 final size:3
Alignment explanation
Indices: 28391833--28391894 Score: 58
Period size: 3 Copynumber: 21.3 Consensus size: 3
28391823 TACTATCATA
* * *
28391833 TAT TTT TAT TAT TAT TAT TCT TAT TAT T-T T-T TTT TAT T-T TCAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT
*
28391876 TGT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT T
28391895 TAATAAACTT
Statistics
Matches: 49, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
2 6 0.12
3 41 0.84
4 2 0.04
ACGTcount: A:0.23, C:0.03, G:0.02, T:0.73
Consensus pattern (3 bp):
TAT
Found at i:28391869 original size:25 final size:25
Alignment explanation
Indices: 28391835--28391895 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 25
28391825 CTATCATATA
28391835 TTTTTATTATTATT-ATTCTTATTAT
1 TTTTTATTATT-TTCATTCTTATTAT
* *
28391860 TTTTTTTTATTTTCATTGTTATTA-
1 TTTTTATTATTTTCATTCTTATTAT
*
28391884 TTATTATTATTT
1 TTTTTATTATTT
28391896 AATAAACTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
24 12 0.39
25 19 0.61
ACGTcount: A:0.21, C:0.03, G:0.02, T:0.74
Consensus pattern (25 bp):
TTTTTATTATTTTCATTCTTATTAT
Found at i:28392342 original size:18 final size:19
Alignment explanation
Indices: 28392302--28392350 Score: 73
Period size: 19 Copynumber: 2.6 Consensus size: 19
28392292 TTAATATTTT
*
28392302 AATATTATTTTATTTATAA
1 AATATTATTTTATTTACAA
28392321 AATATTATTTTATTT-CAA
1 AATATTATTTTATTTACAA
*
28392339 AATATTCTTTTA
1 AATATTATTTTA
28392351 CTTGTTGTAG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
18 13 0.46
19 15 0.54
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.57
Consensus pattern (19 bp):
AATATTATTTTATTTACAA
Found at i:28394314 original size:13 final size:13
Alignment explanation
Indices: 28394296--28394320 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
28394286 ATTTTCAAAA
28394296 ATTTTATAAAATT
1 ATTTTATAAAATT
28394309 ATTTTATAAAAT
1 ATTTTATAAAAT
28394321 CTCATTTTCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
ATTTTATAAAATT
Found at i:28396458 original size:13 final size:13
Alignment explanation
Indices: 28396440--28396464 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
28396430 ATTTTCAAAA
28396440 ATTTTATAAAATT
1 ATTTTATAAAATT
28396453 ATTTTATAAAAT
1 ATTTTATAAAAT
28396465 CTCATTTTCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
ATTTTATAAAATT
Found at i:28397679 original size:29 final size:29
Alignment explanation
Indices: 28397618--28397681 Score: 85
Period size: 28 Copynumber: 2.2 Consensus size: 29
28397608 GCAAATTTTT
** *
28397618 AAAAATTACACTTTTACCCCCGTAAAGTG
1 AAAAATTACACTTTTACCCCCAAAAACTG
*
28397647 AAAAATTACATTTTTA-CCCCAAAAACTG
1 AAAAATTACACTTTTACCCCCAAAAACTG
28397675 AAAAATT
1 AAAAATT
28397682 GCCCATAGAC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 16 0.52
29 15 0.48
ACGTcount: A:0.45, C:0.20, G:0.06, T:0.28
Consensus pattern (29 bp):
AAAAATTACACTTTTACCCCCAAAAACTG
Found at i:28401236 original size:13 final size:13
Alignment explanation
Indices: 28401218--28401242 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
28401208 ATTTTCAAAA
28401218 ATTTTATAAAATT
1 ATTTTATAAAATT
28401231 ATTTTATAAAAT
1 ATTTTATAAAAT
28401243 CTCATTTTCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
ATTTTATAAAATT
Found at i:28409332 original size:17 final size:18
Alignment explanation
Indices: 28409310--28409343 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
28409300 ATCCAAGTCA
28409310 AAAAAAATA-AGAAAAAC
1 AAAAAAATAGAGAAAAAC
*
28409327 AAAAAACTAGAGAAAAA
1 AAAAAAATAGAGAAAAA
28409344 AACTAATTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.79, C:0.06, G:0.09, T:0.06
Consensus pattern (18 bp):
AAAAAAATAGAGAAAAAC
Found at i:28410189 original size:21 final size:22
Alignment explanation
Indices: 28410154--28410197 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
28410144 CTCCTAAAAT
28410154 AATTTAAAATAAAATAACATAA
1 AATTTAAAATAAAATAACATAA
* *
28410176 AATTT-AACTAAAATAACTTAA
1 AATTTAAAATAAAATAACATAA
28410197 A
1 A
28410198 TTAAGTGCTC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.64, C:0.07, G:0.00, T:0.30
Consensus pattern (22 bp):
AATTTAAAATAAAATAACATAA
Found at i:28417546 original size:15 final size:15
Alignment explanation
Indices: 28417526--28417570 Score: 65
Period size: 15 Copynumber: 3.0 Consensus size: 15
28417516 TTTTTAAAAC
28417526 AACTTTAAAACCAAA
1 AACTTTAAAACCAAA
28417541 AACTTTAAAATCC-AA
1 AACTTTAAAA-CCAAA
*
28417556 AGCTTTAAAACCAAA
1 AACTTTAAAACCAAA
28417571 TTCTTTGATC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
14 2 0.07
15 23 0.85
16 2 0.07
ACGTcount: A:0.56, C:0.20, G:0.02, T:0.22
Consensus pattern (15 bp):
AACTTTAAAACCAAA
Found at i:28418762 original size:31 final size:31
Alignment explanation
Indices: 28418722--28418960 Score: 244
Period size: 31 Copynumber: 7.7 Consensus size: 31
28418712 CCACCAAGGT
* *
28418722 TCTACTATCTTAAGAATCCCTCTATCGAGGA
1 TCTAATATCTTAAGAATTCCTCTATCGAGGA
* * * *
28418753 TCTAATATCTTAAGAATTTCTCCACCGAGGC
1 TCTAATATCTTAAGAATTCCTCTATCGAGGA
* * *
28418784 TCAAACATCTTAAAGAATTCCTCTATCAAGGA
1 TCTAATATCTT-AAGAATTCCTCTATCGAGGA
* * *
28418816 TCTAATATCTTAAGAATTCCTCAACCGAGGT
1 TCTAATATCTTAAGAATTCCTCTATCGAGGA
* * *
28418847 TCGAACATCTTAAGAATTCCTCTATCGAGGT
1 TCTAATATCTTAAGAATTCCTCTATCGAGGA
* * * * *
28418878 TCCAACATCTTAAGAATTCTTTTATCGAGGT
1 TCTAATATCTTAAGAATTCCTCTATCGAGGA
* * * *
28418909 TCCAATATCTTAAGAATCCCTTTATCAAGGA
1 TCTAATATCTTAAGAATTCCTCTATCGAGGA
*
28418940 TCTAATATCTTAATAATTCCT
1 TCTAATATCTTAAGAATTCCT
28418961 TCACTGAGGT
Statistics
Matches: 173, Mismatches: 34, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
31 149 0.86
32 24 0.14
ACGTcount: A:0.32, C:0.23, G:0.11, T:0.34
Consensus pattern (31 bp):
TCTAATATCTTAAGAATTCCTCTATCGAGGA
Found at i:28418885 original size:94 final size:93
Alignment explanation
Indices: 28418716--28418929 Score: 266
Period size: 94 Copynumber: 2.3 Consensus size: 93
28418706 ATCCCTCCAC
* * * * * *
28418716 CAAGGTTCTACTATCTTAAGAATCCCTCTATCGAGGATCTAATATCTTAAGAATTTCTCCACCGA
1 CAAGGTTCTAATATCTTAAGAATCCCTCAACCGAGGATCGAACATCTTAAGAATTCCTCCACCGA
28418781 GGCTCAAACATCTTAAAGAATTCCTCTAT
66 GGCTCAAACATCTT-AAGAATTCCTCTAT
* * * * *
28418810 CAAGGATCTAATATCTTAAGAATTCCTCAACCGAGGTTCGAACATCTTAAGAATTCCTCTATCGA
1 CAAGGTTCTAATATCTTAAGAATCCCTCAACCGAGGATCGAACATCTTAAGAATTCCTCCACCGA
* * * *
28418875 GGTTCCAACATCTTAAGAATTCTTTTAT
66 GGCTCAAACATCTTAAGAATTCCTCTAT
* *
28418903 CGAGGTTCCAATATCTTAAGAATCCCT
1 CAAGGTTCTAATATCTTAAGAATCCCT
28418930 TTATCAAGGA
Statistics
Matches: 101, Mismatches: 19, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
93 35 0.35
94 66 0.65
ACGTcount: A:0.32, C:0.23, G:0.13, T:0.32
Consensus pattern (93 bp):
CAAGGTTCTAATATCTTAAGAATCCCTCAACCGAGGATCGAACATCTTAAGAATTCCTCCACCGA
GGCTCAAACATCTTAAGAATTCCTCTAT
Found at i:28418970 original size:62 final size:62
Alignment explanation
Indices: 28418728--28418976 Score: 293
Period size: 62 Copynumber: 4.0 Consensus size: 62
28418718 AGGTTCTACT
* * * *
28418728 ATCTTAAGAATCCCTCTATCGAGGATCTAATATCTTAAGAATTTCTCCACCGAGGCTCAAAC
1 ATCTTAAGAATCCCTCTATCAAGGATCTAATATCTTAAGAATTCCTTCACCGAGGTTCAAAC
* *
28418790 ATCTTAAAGAATTCCTCTATCAAGGATCTAATATCTTAAGAATTCC-TCAACCGAGGTTCGAAC
1 ATCTT-AAGAATCCCTCTATCAAGGATCTAATATCTTAAGAATTCCTTC-ACCGAGGTTCAAAC
* * * * * * * * * *
28418853 ATCTTAAGAATTCCTCTATCGAGGTTCCAACATCTTAAGAATTCTTTTATCGAGGTTCCAAT
1 ATCTTAAGAATCCCTCTATCAAGGATCTAATATCTTAAGAATTCCTTCACCGAGGTTCAAAC
* * *
28418915 ATCTTAAGAATCCCTTTATCAAGGATCTAATATCTTAATAATTCCTTCACTGAGGTTACAAA
1 ATCTTAAGAATCCCTCTATCAAGGATCTAATATCTTAAGAATTCCTTCACCGAGGTT-CAAA
28418977 AAGAATCATC
Statistics
Matches: 156, Mismatches: 27, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
62 98 0.63
63 58 0.37
ACGTcount: A:0.33, C:0.22, G:0.12, T:0.33
Consensus pattern (62 bp):
ATCTTAAGAATCCCTCTATCAAGGATCTAATATCTTAAGAATTCCTTCACCGAGGTTCAAAC
Found at i:28419746 original size:16 final size:15
Alignment explanation
Indices: 28419722--28419777 Score: 51
Period size: 16 Copynumber: 3.6 Consensus size: 15
28419712 ACCTTGAACC
*
28419722 TTCTCTTTTTCTCTTT
1 TTCT-TTTTTTTCTTT
28419738 TTCTTTTTTATTCTTT
1 TTCTTTTTT-TTCTTT
* *
28419754 TTATTTTGTTTTGTTT
1 TTCTTTT-TTTTCTTT
28419770 TT-TTTTTT
1 TTCTTTTTT
28419778 AATTCAAACT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
14 2 0.06
15 9 0.26
16 22 0.63
17 2 0.06
ACGTcount: A:0.04, C:0.11, G:0.04, T:0.82
Consensus pattern (15 bp):
TTCTTTTTTTTCTTT
Found at i:28428981 original size:115 final size:115
Alignment explanation
Indices: 28428779--28429011 Score: 457
Period size: 115 Copynumber: 2.0 Consensus size: 115
28428769 CCTGTCCTTT
28428779 ATCATCTCAAGTAATTATTGTCTGCACTTGGAAAGTGTATGCAAAGTAAAGTCAAGTATTCTTCA
1 ATCATCTCAAGTAATTATTGTCTGCACTTGGAAAGTGTATGCAAAGTAAAGTCAAGTATTCTTCA
*
28428844 ATTGTTGGCATCATATCCACTTCATTGAAGACAAAACATCTGTATAAGGG
66 ATTGTTAGCATCATATCCACTTCATTGAAGACAAAACATCTGTATAAGGG
28428894 ATCATCTCAAGTAATTATTGTCTGCACTTGGAAAGTGTATGCAAAGTAAAGTCAAGTATTCTTCA
1 ATCATCTCAAGTAATTATTGTCTGCACTTGGAAAGTGTATGCAAAGTAAAGTCAAGTATTCTTCA
28428959 ATTGTTAGCATCATATCCACTTCATTGAAGACAAAACATCTGTATAAGGG
66 ATTGTTAGCATCATATCCACTTCATTGAAGACAAAACATCTGTATAAGGG
28429009 ATC
1 ATC
28429012 CTAAAATTGA
Statistics
Matches: 117, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
115 117 1.00
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Consensus pattern (115 bp):
ATCATCTCAAGTAATTATTGTCTGCACTTGGAAAGTGTATGCAAAGTAAAGTCAAGTATTCTTCA
ATTGTTAGCATCATATCCACTTCATTGAAGACAAAACATCTGTATAAGGG
Found at i:28431991 original size:35 final size:35
Alignment explanation
Indices: 28431952--28432027 Score: 107
Period size: 35 Copynumber: 2.2 Consensus size: 35
28431942 GTTACACTTG
*
28431952 ATCTTGCAAAAGGCAAATTGTAGAGGTTATGCCTA
1 ATCTTGCAAAAGGCAAATTGTACAGGTTATGCCTA
* **
28431987 ATCTTGCAAAAGGTATGTTGTACAGGTTATGCCTA
1 ATCTTGCAAAAGGCAAATTGTACAGGTTATGCCTA
*
28432022 ACCTTG
1 ATCTTG
28432028 TTGAAAAGGC
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32
Consensus pattern (35 bp):
ATCTTGCAAAAGGCAAATTGTACAGGTTATGCCTA
Found at i:28432044 original size:37 final size:35
Alignment explanation
Indices: 28431954--28432044 Score: 103
Period size: 35 Copynumber: 2.5 Consensus size: 35
28431944 TACACTTGAT
* * * *
28431954 CTTGCAAAAGGCAAATTGTAGAGGTTATGCCTAAT
1 CTTGCAAAAGGCTAGTTGTACAGGTTATGCCTAAC
28431989 CTTGCAAAAGG-TATGTTGTACAGGTTATGCCTAAC
1 CTTGCAAAAGGCTA-GTTGTACAGGTTATGCCTAAC
*
28432024 CTTGTTGAAAAGGCTAGTTGT
1 CTTG--CAAAAGGCTAGTTGT
28432045 TAGTGGATTC
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
34 1 0.02
35 33 0.70
37 11 0.23
38 2 0.04
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (35 bp):
CTTGCAAAAGGCTAGTTGTACAGGTTATGCCTAAC
Found at i:28432931 original size:24 final size:24
Alignment explanation
Indices: 28432898--28432946 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
28432888 TTTAAATAAT
* **
28432898 TTTAAATAATTTATTGTTTACTAA
1 TTTAAATAATTGATTAATTACTAA
*
28432922 TTTAACTAATTGATTAATTACTAA
1 TTTAAATAATTGATTAATTACTAA
28432946 T
1 T
28432947 ACATGATTCT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.39, C:0.06, G:0.04, T:0.51
Consensus pattern (24 bp):
TTTAAATAATTGATTAATTACTAA
Found at i:28433327 original size:71 final size:70
Alignment explanation
Indices: 28433240--28433373 Score: 198
Period size: 71 Copynumber: 1.9 Consensus size: 70
28433230 CTAATACAAC
* *
28433240 CTTAATTAATTAAAATAAGTTTAAAT-TTTACTAAATCTACTAATTTAATTAATTGCTTAATTAC
1 CTTAATTAATTAAAATAAGTTTAAATGTTT-CCAAATCTACTAATTTAATTAATTGATT-ATTAC
28433304 CAAAAAA
64 CAAAAAA
* * *
28433311 CTTAATTAATTTAAATAATTTTAAATGTTTCCAAATGTACTAATTTAATTAATTGATTATTAC
1 CTTAATTAATTAAAATAAGTTTAAATGTTTCCAAATCTACTAATTTAATTAATTGATTATTAC
28433374 TAATACATGA
Statistics
Matches: 57, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
70 5 0.09
71 49 0.86
72 3 0.05
ACGTcount: A:0.43, C:0.09, G:0.04, T:0.44
Consensus pattern (70 bp):
CTTAATTAATTAAAATAAGTTTAAATGTTTCCAAATCTACTAATTTAATTAATTGATTATTACCA
AAAAA
Found at i:28433408 original size:13 final size:13
Alignment explanation
Indices: 28433390--28433414 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
28433380 ATGATTATTT
28433390 TTATTTACTTAAA
1 TTATTTACTTAAA
28433403 TTATTTACTTAA
1 TTATTTACTTAA
28433415 TTCCCTAAAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.56
Consensus pattern (13 bp):
TTATTTACTTAAA
Found at i:28440960 original size:15 final size:15
Alignment explanation
Indices: 28440911--28440961 Score: 68
Period size: 15 Copynumber: 3.4 Consensus size: 15
28440901 TTTAAAGATC
*
28440911 AAAGATTTTGGTTTT
1 AAAGTTTTTGGTTTT
28440926 AAAG-TTTTGGATTTT
1 AAAGTTTTTGG-TTTT
*
28440941 AAAGTTTTTTGTTTT
1 AAAGTTTTTGGTTTT
28440956 AAAGTT
1 AAAGTT
28440962 GTTTTAAGAA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
14 6 0.18
15 22 0.67
16 5 0.15
ACGTcount: A:0.27, C:0.00, G:0.18, T:0.55
Consensus pattern (15 bp):
AAAGTTTTTGGTTTT
Found at i:28445886 original size:2 final size:2
Alignment explanation
Indices: 28445879--28445912 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
28445869 TTCATATCAC
28445879 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
28445913 CAAAATTAGC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:28448408 original size:18 final size:18
Alignment explanation
Indices: 28448369--28448416 Score: 62
Period size: 18 Copynumber: 2.6 Consensus size: 18
28448359 TTAATATTTT
28448369 AATATTATTTTATTCCTAA
1 AATATTATTTTATT-CTAA
28448388 AATATTATTTTAATT-TAA
1 AATATTATTTT-ATTCTAA
*
28448406 AATATTCTTTT
1 AATATTATTTT
28448417 CACCCGTAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 13 0.48
19 11 0.41
20 3 0.11
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (18 bp):
AATATTATTTTATTCTAA
Found at i:28455031 original size:30 final size:29
Alignment explanation
Indices: 28454996--28455053 Score: 71
Period size: 30 Copynumber: 2.0 Consensus size: 29
28454986 GGTGGAGTTC
* * *
28454996 AATCATTTGTTTCATCTAATTTAAGATCCA
1 AATCATATGTTGCATCAAATTTAA-ATCCA
*
28455026 AATCATATGTTGCTTCAAATTTAAATCC
1 AATCATATGTTGCATCAAATTTAAATCC
28455054 CGGTTGTTAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 4 0.17
30 20 0.83
ACGTcount: A:0.34, C:0.17, G:0.07, T:0.41
Consensus pattern (29 bp):
AATCATATGTTGCATCAAATTTAAATCCA
Found at i:28455353 original size:33 final size:33
Alignment explanation
Indices: 28455316--28455382 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
28455306 CAGGAGGACC
28455316 GAATGGGAACGAGGAGTATACTCCCCACGCCTT
1 GAATGGGAACGAGGAGTATACTCCCCACGCCTT
28455349 GAATGGGAACGAGGAGTATACTCCCCACGCCTT
1 GAATGGGAACGAGGAGTATACTCCCCACGCCTT
28455382 G
1 G
28455383 CCTACGTCAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.27, C:0.27, G:0.28, T:0.18
Consensus pattern (33 bp):
GAATGGGAACGAGGAGTATACTCCCCACGCCTT
Done.