Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38630433
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 2298367 characters in sequence are not A, C, G, or T
File 80 of 97
Found at i:31695482 original size:8 final size:8
Alignment explanation
Indices: 31695472--31695501 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
31695462 TGCCCTCTTT
*
31695472 CTCTCTCT
1 CTCTCTCC
31695480 CTCTCTCC
1 CTCTCTCC
31695488 CTCTCTCC
1 CTCTCTCC
31695496 CTCTCT
1 CTCTCT
31695502 ATGTGACCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.00, C:0.57, G:0.00, T:0.43
Consensus pattern (8 bp):
CTCTCTCC
Found at i:31698593 original size:15 final size:15
Alignment explanation
Indices: 31698559--31698594 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
31698549 GAAACTGAAT
*
31698559 TTTAAAAAAAGAAAG
1 TTTAAAAAAAGAAAA
*
31698574 GTTAAAAAAAGAAAA
1 TTTAAAAAAAGAAAA
31698589 TTTAAA
1 TTTAAA
31698595 TTTGATAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.67, C:0.00, G:0.11, T:0.22
Consensus pattern (15 bp):
TTTAAAAAAAGAAAA
Found at i:31709411 original size:13 final size:13
Alignment explanation
Indices: 31709393--31709417 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
31709383 GGAGAAATTG
31709393 TGATTTTATAAAA
1 TGATTTTATAAAA
31709406 TGATTTTATAAA
1 TGATTTTATAAA
31709418 TTTTCTGAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TGATTTTATAAAA
Found at i:31713279 original size:25 final size:22
Alignment explanation
Indices: 31713230--31713279 Score: 64
Period size: 25 Copynumber: 2.1 Consensus size: 22
31713220 ATAGCTCAGG
*
31713230 ATTAAAATAATATTATTTGTTT
1 ATTAAAATAATATTATTTGTAT
31713252 ATTAAATATATATATATATTTGTAT
1 ATTAAA-ATA-ATAT-TATTTGTAT
31713277 ATT
1 ATT
31713280 TATATTTCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 6 0.25
23 3 0.12
24 4 0.17
25 11 0.46
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (22 bp):
ATTAAAATAATATTATTTGTAT
Found at i:31728143 original size:2 final size:2
Alignment explanation
Indices: 31728136--31728164 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
31728126 ATGAAAATGG
31728136 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
31728165 TACTGAAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:31742163 original size:17 final size:17
Alignment explanation
Indices: 31742141--31742174 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
31742131 GCATGAACAT
31742141 GAGCAA-ACAAGGAAAAA
1 GAGCAAGACAA-GAAAAA
31742158 GAGCAAGACAAGAAAAA
1 GAGCAAGACAAGAAAAA
31742175 ACGAATTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.65, C:0.12, G:0.24, T:0.00
Consensus pattern (17 bp):
GAGCAAGACAAGAAAAA
Found at i:31742174 original size:18 final size:17
Alignment explanation
Indices: 31742141--31742175 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
31742131 GCATGAACAT
*
31742141 GAGCAAACAAGGAAAAA
1 GAGCAAACAAGAAAAAA
31742158 GAGCAAGACAAGAAAAAA
1 GAGCAA-ACAAGAAAAAA
31742176 CGAATTAATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.66, C:0.11, G:0.23, T:0.00
Consensus pattern (17 bp):
GAGCAAACAAGAAAAAA
Found at i:31746651 original size:4 final size:4
Alignment explanation
Indices: 31746642--31746668 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
31746632 GTGAGCGTGC
31746642 TTGT TTGT TTGT TTGT TTGT TTGT TTG
1 TTGT TTGT TTGT TTGT TTGT TTGT TTG
31746669 GGTTTTTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.26, T:0.74
Consensus pattern (4 bp):
TTGT
Found at i:31747958 original size:10 final size:10
Alignment explanation
Indices: 31747943--31747970 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
31747933 CCAAATTATC
31747943 AAAAAAAATA
1 AAAAAAAATA
31747953 AAAAAAAATA
1 AAAAAAAATA
31747963 AAAAAAAA
1 AAAAAAAA
31747971 GTTGAGAGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.93, C:0.00, G:0.00, T:0.07
Consensus pattern (10 bp):
AAAAAAAATA
Found at i:31748099 original size:28 final size:29
Alignment explanation
Indices: 31748056--31748118 Score: 83
Period size: 28 Copynumber: 2.2 Consensus size: 29
31748046 AATATGTCAC
*
31748056 GTAACAATAATATTTTTTCAATATGAAGT
1 GTAACAACAATATTTTTTCAATATGAAGT
* **
31748085 GTAACAACAAT-TTTTTTTAATATGGCGT
1 GTAACAACAATATTTTTTCAATATGAAGT
31748113 GTAACA
1 GTAACA
31748119 TGCTTTTTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 20 0.67
29 10 0.33
ACGTcount: A:0.38, C:0.10, G:0.13, T:0.40
Consensus pattern (29 bp):
GTAACAACAATATTTTTTCAATATGAAGT
Found at i:31748308 original size:69 final size:69
Alignment explanation
Indices: 31748176--31748348 Score: 161
Period size: 69 Copynumber: 2.5 Consensus size: 69
31748166 GTGTAGCAAC
* * * ** * *
31748176 CTAATCATAACTTGTCACAGGTTTTTATATTTTG-CTTGTCACATATTTGTGTACATAGCATGTA
1 CTAACCATAACTTGTCACAGATTTTTGTA-CATGACATGTCACATATTTGTATACATAGCATGTA
31748240 ACACG
65 ACACG
** * ** *
31748245 CTAACCATTGCTTGTCACA-AGTTTTTGTACATGACATGTCACATATTTTTATATGTAGGATGTA
1 CTAACCATAACTTGTCACAGA-TTTTTGTACATGACATGTCACATATTTGTATACATAGCATGTA
31748309 ACACG
65 ACACG
* * * *
31748314 TTAATCATAACTTGTTACAGATTTTTGTATATGAC
1 CTAACCATAACTTGTCACAGATTTTTGTACATGAC
31748349 GTGTAACAAG
Statistics
Matches: 82, Mismatches: 19, Indels: 6
0.77 0.18 0.06
Matches are distributed among these distances:
68 2 0.02
69 79 0.96
70 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.40
Consensus pattern (69 bp):
CTAACCATAACTTGTCACAGATTTTTGTACATGACATGTCACATATTTGTATACATAGCATGTAA
CACG
Found at i:31748354 original size:45 final size:45
Alignment explanation
Indices: 31748305--31748393 Score: 115
Period size: 45 Copynumber: 2.0 Consensus size: 45
31748295 ATATGTAGGA
* * * * *
31748305 TGTAACACGTTAATCATAACTTGTTACAGATTTTTGTATATGACG
1 TGTAACAAGCTAACCATAACTTATCACAGATTTTTGTATATGACG
* *
31748350 TGTAACAAGCTAACCATAGCTTATCACAGGTTTTTGTATATGAC
1 TGTAACAAGCTAACCATAACTTATCACAGATTTTTGTATATGAC
31748394 TTGTTATATA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.37
Consensus pattern (45 bp):
TGTAACAAGCTAACCATAACTTATCACAGATTTTTGTATATGACG
Found at i:31748354 original size:114 final size:114
Alignment explanation
Indices: 31748210--31748578 Score: 397
Period size: 114 Copynumber: 3.2 Consensus size: 114
31748200 TTATATTTTG
* * * * *
31748210 CTTGTCACATATTTGTGTACAT-AGCATGTAACACGCTAACCATTGCTTGTCACAAGTTTTTGTA
1 CTTGTCACAGATTTTTGTACATGA-CGTGTAACAAGCTAACCATTGCTTATCACAAGTTTTTGTA
* * ** * *
31748274 CATGACATGTCACATATTTTTATATGTAGGATGTAACACGTTAATCATAA
65 TATGACATGTCACATATTTTTGTACATAGGATGTAACACGCTAATCATGA
* * * *
31748324 CTTGTTACAGATTTTTGTATATGACGTGTAACAAGCTAACCATAGCTTATCACAGGTTTTTGTAT
1 CTTGTCACAGATTTTTGTACATGACGTGTAACAAGCTAACCATTGCTTATCACAAGTTTTTGTAT
* * * * * * *
31748389 ATGACTTGTTATATATTTTTGTACAT-GGCATATAACAAGCTAATTATGG
66 ATGACATGTCACATATTTTTGTACATAGG-ATGTAACACGCTAATCATGA
* * * *
31748438 CTTGTCACATATTTTTGTACATCG-CGTGTAACATGCTAATCA-TGACTTATCACAAGTTTTTAT
1 CTTGTCACAGATTTTTGTACAT-GACGTGTAACAAGCTAACCATTG-CTTATCACAAGTTTTTGT
* *
31748501 ATATGACGTGTCACATATTTTTGTACATAACG-TGTAACACGCTAATCATGA
64 ATATGACATGTCACATATTTTTGTACAT-AGGATGTAACACGCTAATCATGA
*
31748552 CTTATCACAGATTTTTGTACATGACGT
1 CTTGTCACAGATTTTTGTACATGACGT
31748579 ATCATATATT
Statistics
Matches: 208, Mismatches: 40, Indels: 14
0.79 0.15 0.05
Matches are distributed among these distances:
113 4 0.02
114 201 0.97
115 2 0.01
116 1 0.00
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.38
Consensus pattern (114 bp):
CTTGTCACAGATTTTTGTACATGACGTGTAACAAGCTAACCATTGCTTATCACAAGTTTTTGTAT
ATGACATGTCACATATTTTTGTACATAGGATGTAACACGCTAATCATGA
Found at i:31748446 original size:69 final size:69
Alignment explanation
Indices: 31748323--31748456 Score: 160
Period size: 69 Copynumber: 1.9 Consensus size: 69
31748313 GTTAATCATA
* * * *
31748323 ACTTGTTACAGATTTTTGTATATGACGTGTAACAAGCTAACCATAGCTTATCACAGGTTTTTGTA
1 ACTTGTTACAGATTTTTGTACATGACATATAACAAGCTAACCATAGCTTATCACAGATTTTTGTA
31748388 TATG
66 TATG
* * * ** * * *
31748392 ACTTGTTATATATTTTTGTACATGGCATATAACAAGCTAATTATGGCTTGTCACATATTTTTGTA
1 ACTTGTTACAGATTTTTGTACATGACATATAACAAGCTAACCATAGCTTATCACAGATTTTTGTA
31748457 CATCGCGTGT
Statistics
Matches: 53, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
69 53 1.00
ACGTcount: A:0.29, C:0.13, G:0.16, T:0.42
Consensus pattern (69 bp):
ACTTGTTACAGATTTTTGTACATGACATATAACAAGCTAACCATAGCTTATCACAGATTTTTGTA
TATG
Found at i:31748498 original size:45 final size:45
Alignment explanation
Indices: 31748401--31748491 Score: 119
Period size: 45 Copynumber: 2.0 Consensus size: 45
31748391 GACTTGTTAT
* * * *
31748401 ATATTTTTGTACATGGCATATAACAAGCTAATTATGGCTTGTCAC
1 ATATTTTTGTACATCGCATATAACAAGCTAATCATGACTTATCAC
* * *
31748446 ATATTTTTGTACATCGCGTGTAACATGCTAATCATGACTTATCAC
1 ATATTTTTGTACATCGCATATAACAAGCTAATCATGACTTATCAC
31748491 A
1 A
31748492 AGTTTTTATA
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (45 bp):
ATATTTTTGTACATCGCATATAACAAGCTAATCATGACTTATCAC
Found at i:31748514 original size:69 final size:69
Alignment explanation
Indices: 31748440--31748649 Score: 260
Period size: 69 Copynumber: 3.0 Consensus size: 69
31748430 AATTATGGCT
** * *
31748440 TGTCACATATTTTTGTACATCGCGTGTAACATGCTAATCATGACTTATCACA-AGTTTTTATATA
1 TGTCACATATTTTTGTACATAACGTGTAACACGCTAATCATGACTTATCACAGA-TTTTTATACA
31748504 TGACG
65 TGACG
*
31748509 TGTCACATATTTTTGTACATAACGTGTAACACGCTAATCATGACTTATCACAGATTTTTGTACAT
1 TGTCACATATTTTTGTACATAACGTGTAACACGCTAATCATGACTTATCACAGATTTTTATACAT
31748574 GACG
66 GACG
* * * * ** * * * * *
31748578 TATCATATATTTTTGTATATAACATGTAACACATTAACCATAATTTATCATAAATTTTTATACAT
1 TGTCACATATTTTTGTACATAACGTGTAACACGCTAATCATGACTTATCACAGATTTTTATACAT
31748643 GACG
66 GACG
31748647 TGT
1 TGT
31748650 AATATCATAA
Statistics
Matches: 122, Mismatches: 18, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
69 121 0.99
70 1 0.01
ACGTcount: A:0.32, C:0.16, G:0.12, T:0.40
Consensus pattern (69 bp):
TGTCACATATTTTTGTACATAACGTGTAACACGCTAATCATGACTTATCACAGATTTTTATACAT
GACG
Found at i:31748581 original size:24 final size:24
Alignment explanation
Indices: 31748547--31748594 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
31748537 ACACGCTAAT
*
31748547 CATGACTTATCACAGATTTTTGTA
1 CATGACGTATCACAGATTTTTGTA
* *
31748571 CATGACGTATCATATATTTTTGTA
1 CATGACGTATCACAGATTTTTGTA
31748595 TATAACATGT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.29, C:0.15, G:0.12, T:0.44
Consensus pattern (24 bp):
CATGACGTATCACAGATTTTTGTA
Found at i:31753670 original size:14 final size:13
Alignment explanation
Indices: 31753637--31753680 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 13
31753627 CCAAGTGCTT
31753637 TTATTAAATTAATA
1 TTATT-AATTAATA
31753651 TATATTAATTATATA
1 T-TATTAATTA-ATA
31753666 TTATTAATTAA-A
1 TTATTAATTAATA
31753678 TTA
1 TTA
31753681 ATTACAAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
12 4 0.14
13 1 0.04
14 15 0.54
15 8 0.29
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
TTATTAATTAATA
Found at i:31755589 original size:15 final size:17
Alignment explanation
Indices: 31755561--31755606 Score: 53
Period size: 18 Copynumber: 2.8 Consensus size: 17
31755551 ATGATAAAGG
31755561 CAACAAAGGG-AATGG-A
1 CAAC-AAGGGCAATGGAA
31755577 -AACAAGGGCAATGGCAA
1 CAACAAGGGCAATGG-AA
31755594 CAACAAGGGCAAT
1 CAACAAGGGCAAT
31755607 AGCAATGGCA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
14 5 0.19
15 8 0.31
17 1 0.04
18 12 0.46
ACGTcount: A:0.48, C:0.17, G:0.28, T:0.07
Consensus pattern (17 bp):
CAACAAGGGCAATGGAA
Found at i:31755600 original size:18 final size:18
Alignment explanation
Indices: 31755577--31755611 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
31755567 AGGGAATGGA
*
31755577 AACAAGGGCAATGGCAAC
1 AACAAGGGCAATAGCAAC
31755595 AACAAGGGCAATAGCAA
1 AACAAGGGCAATAGCAA
31755612 TGGCAAAGGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.49, C:0.20, G:0.26, T:0.06
Consensus pattern (18 bp):
AACAAGGGCAATAGCAAC
Found at i:31761290 original size:52 final size:52
Alignment explanation
Indices: 31761228--31761328 Score: 175
Period size: 52 Copynumber: 1.9 Consensus size: 52
31761218 CGTGTTATCG
31761228 TACATGTTAGCTTCAGATCATTTGACTTATTGTTTCCTCCATTACCCTCTCC
1 TACATGTTAGCTTCAGATCATTTGACTTATTGTTTCCTCCATTACCCTCTCC
* * *
31761280 TACATGTTAGCTTTAGATCGTTTGACTTGTTGTTTCCTCCATTACCCTC
1 TACATGTTAGCTTCAGATCATTTGACTTATTGTTTCCTCCATTACCCTC
31761329 CCCCAAAAGG
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 46 1.00
ACGTcount: A:0.18, C:0.27, G:0.12, T:0.44
Consensus pattern (52 bp):
TACATGTTAGCTTCAGATCATTTGACTTATTGTTTCCTCCATTACCCTCTCC
Found at i:31763035 original size:93 final size:93
Alignment explanation
Indices: 31762876--31763061 Score: 372
Period size: 93 Copynumber: 2.0 Consensus size: 93
31762866 GCTTGCACCC
31762876 TGTAATGCATGCTTATTAACATTTCTTCATGTACAGGAAACTTCTACAGCTAAGCTCTTCATGAC
1 TGTAATGCATGCTTATTAACATTTCTTCATGTACAGGAAACTTCTACAGCTAAGCTCTTCATGAC
31762941 TCCTTTGCAAGGGTCACCAAATGTACTA
66 TCCTTTGCAAGGGTCACCAAATGTACTA
31762969 TGTAATGCATGCTTATTAACATTTCTTCATGTACAGGAAACTTCTACAGCTAAGCTCTTCATGAC
1 TGTAATGCATGCTTATTAACATTTCTTCATGTACAGGAAACTTCTACAGCTAAGCTCTTCATGAC
31763034 TCCTTTGCAAGGGTCACCAAATGTACTA
66 TCCTTTGCAAGGGTCACCAAATGTACTA
31763062 GTTGATACTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
93 93 1.00
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (93 bp):
TGTAATGCATGCTTATTAACATTTCTTCATGTACAGGAAACTTCTACAGCTAAGCTCTTCATGAC
TCCTTTGCAAGGGTCACCAAATGTACTA
Found at i:31770461 original size:10 final size:11
Alignment explanation
Indices: 31770441--31770465 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
31770431 ATAGTATTAG
31770441 TTTCTTTTTTT
1 TTTCTTTTTTT
31770452 TTTCTTTTTTT
1 TTTCTTTTTTT
31770463 TTT
1 TTT
31770466 TTGGTTTGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (11 bp):
TTTCTTTTTTT
Found at i:31779211 original size:46 final size:47
Alignment explanation
Indices: 31779113--31779211 Score: 119
Period size: 46 Copynumber: 2.1 Consensus size: 47
31779103 TTGGTCTTTG
* * *
31779113 GTTTTTGGTTTTAGCGAATCAGGTAAGTGACTTAATATCTTTTTGGT
1 GTTTTTGGTTTTAGCGAATCAAGTAAGTAACTTAATATCTTTTTAGT
* * ** *
31779160 ATTTTT-GTTTTAGTGAATCAAGTAAGTAACTTGGTATTTTTTTAGT
1 GTTTTTGGTTTTAGCGAATCAAGTAAGTAACTTAATATCTTTTTAGT
31779206 GTTTTT
1 GTTTTT
31779212 ATCTATGAAA
Statistics
Matches: 43, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
46 38 0.88
47 5 0.12
ACGTcount: A:0.22, C:0.06, G:0.20, T:0.52
Consensus pattern (47 bp):
GTTTTTGGTTTTAGCGAATCAAGTAAGTAACTTAATATCTTTTTAGT
Found at i:31779619 original size:28 final size:28
Alignment explanation
Indices: 31779572--31779646 Score: 87
Period size: 28 Copynumber: 2.7 Consensus size: 28
31779562 GTGGATAATT
* * *
31779572 CACCGAAAGTTGATGGATACTTGTAACC
1 CACCAAAAGTGGATGAATACTTGTAACC
* * *
31779600 CACTAAAAGTGGATGAATACTTTTAATC
1 CACCAAAAGTGGATGAATACTTGTAACC
*
31779628 CACCAGAAGTGGATGAATA
1 CACCAAAAGTGGATGAATA
31779647 ATAGGAAAGA
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.25
Consensus pattern (28 bp):
CACCAAAAGTGGATGAATACTTGTAACC
Found at i:31779963 original size:64 final size:64
Alignment explanation
Indices: 31779831--31779964 Score: 153
Period size: 63 Copynumber: 2.1 Consensus size: 64
31779821 TATTGTTAAT
* ** * *
31779831 TTTCTTGTCCACCCTAAAAAAGGAATTGATCATATGATTAGTAATGAAAATATCCATTATTGAT
1 TTTCTTGTCCACCCTAAAAAAGGAATTAATCATATGATTAGTAATGAAAATATCCAAGAATGAA
* * * * * *
31779895 TTTCTTGTCCACCTTGAAGAAGG-ATTAATCATTTGATTCGTAATGAAAATATCTAAGAATGAAA
1 TTTCTTGTCCACCCTAAAAAAGGAATTAATCATATGATTAGTAATGAAAATATCCAAGAATG-AA
31779959 TTTCTT
1 TTTCTT
31779965 AATAATTTGT
Statistics
Matches: 58, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
63 31 0.53
64 27 0.47
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.37
Consensus pattern (64 bp):
TTTCTTGTCCACCCTAAAAAAGGAATTAATCATATGATTAGTAATGAAAATATCCAAGAATGAA
Found at i:31787150 original size:2 final size:2
Alignment explanation
Indices: 31787143--31787172 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
31787133 TCCAAATCTC
*
31787143 AG AG AG AG AG AG AG AG AG AG AG GG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
31787173 CGCCATGGCC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.53, T:0.00
Consensus pattern (2 bp):
AG
Found at i:31787335 original size:12 final size:12
Alignment explanation
Indices: 31787316--31787346 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
31787306 GCTAACAAAT
31787316 CAAAGCCGAAGC
1 CAAAGCCGAAGC
*
31787328 CGAAGCCGAAGC
1 CAAAGCCGAAGC
31787340 CAAAGCC
1 CAAAGCC
31787347 AGACAGTAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.39, C:0.35, G:0.26, T:0.00
Consensus pattern (12 bp):
CAAAGCCGAAGC
Found at i:31787523 original size:3 final size:3
Alignment explanation
Indices: 31787505--31787540 Score: 54
Period size: 3 Copynumber: 11.7 Consensus size: 3
31787495 AAAGTAGAGG
*
31787505 AGA ATGA AGG AGA AGA AGA AGA AGA AGA AGA AGA AG
1 AGA A-GA AGA AGA AGA AGA AGA AGA AGA AGA AGA AG
31787541 CAAAGATGTG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 27 0.90
4 3 0.10
ACGTcount: A:0.61, C:0.00, G:0.36, T:0.03
Consensus pattern (3 bp):
AGA
Found at i:31791657 original size:12 final size:12
Alignment explanation
Indices: 31791628--31791659 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
31791618 ACTAGCCCAA
*
31791628 GCTCCAGCCCTG
1 GCTCCGGCCCTG
31791640 GCTCCGGCCCTG
1 GCTCCGGCCCTG
31791652 GCTCCGGC
1 GCTCCGGC
31791660 ACCACCCGGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.03, C:0.50, G:0.31, T:0.16
Consensus pattern (12 bp):
GCTCCGGCCCTG
Found at i:31796793 original size:21 final size:22
Alignment explanation
Indices: 31796767--31796807 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
31796757 TTACTCTATA
31796767 TAAATAATT-TAATA-ATAATTT
1 TAAAT-ATTATAATAGATAATTT
31796788 TAAATATTATAATAGATAAT
1 TAAATATTATAATAGATAAT
31796808 AATATAATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 3 0.17
21 10 0.56
22 5 0.28
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (22 bp):
TAAATATTATAATAGATAATTT
Found at i:31797022 original size:18 final size:19
Alignment explanation
Indices: 31796999--31797045 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
31796989 ATAATATCAA
*
31796999 TAAATTAT-TAATAAATAT
1 TAAATTATGAAATAAATAT
*
31797017 TAAATTATGAAATAATTAT
1 TAAATTATGAAATAAATAT
*
31797036 TAAACTATGA
1 TAAATTATGA
31797046 TAAATTATTG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
18 8 0.32
19 17 0.68
ACGTcount: A:0.53, C:0.02, G:0.04, T:0.40
Consensus pattern (19 bp):
TAAATTATGAAATAAATAT
Found at i:31805736 original size:22 final size:22
Alignment explanation
Indices: 31805694--31805736 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
31805684 TGACTTTAAT
**
31805694 CTTTTTCTTTTTCTTTCTTTCC
1 CTTTTTCTTTTTCTTAATTTCC
31805716 CTTTTTCTTTTTCTTAATTTC
1 CTTTTTCTTTTTCTTAATTTC
31805737 ACACCCTCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.05, C:0.23, G:0.00, T:0.72
Consensus pattern (22 bp):
CTTTTTCTTTTTCTTAATTTCC
Found at i:31806306 original size:29 final size:27
Alignment explanation
Indices: 31806256--31806309 Score: 72
Period size: 29 Copynumber: 1.9 Consensus size: 27
31806246 AACATGCATA
31806256 AAATTAAAAAATTAGTACAATTAAAAG
1 AAATTAAAAAATTAGTACAATTAAAAG
**
31806283 AAATTAAAAGAAGTTAGTGTAATTAAA
1 AAATTAAAA-AA-TTAGTACAATTAAA
31806310 TCTAGTTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 9 0.39
28 2 0.09
29 12 0.52
ACGTcount: A:0.59, C:0.02, G:0.11, T:0.28
Consensus pattern (27 bp):
AAATTAAAAAATTAGTACAATTAAAAG
Found at i:31808087 original size:17 final size:16
Alignment explanation
Indices: 31808054--31808094 Score: 57
Period size: 17 Copynumber: 2.6 Consensus size: 16
31808044 TTTTTGTAGA
*
31808054 AAATTAA-TTAAATCT
1 AAATTAATTTAAAACT
31808069 AAATTCAATTTAAAACT
1 AAATT-AATTTAAAACT
31808086 AAATTAATT
1 AAATTAATT
31808095 AACAAAAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
15 5 0.22
16 6 0.26
17 12 0.52
ACGTcount: A:0.54, C:0.07, G:0.00, T:0.39
Consensus pattern (16 bp):
AAATTAATTTAAAACT
Found at i:31812813 original size:28 final size:29
Alignment explanation
Indices: 31812763--31812860 Score: 103
Period size: 29 Copynumber: 3.4 Consensus size: 29
31812753 TACAAACCAC
* *
31812763 TACCTTTT-ATGGATCAAA-CATAACCCTT
1 TACCTTTTCAAGGAT-AAAGCATAACCTTT
31812791 T-CCTTTTCAAGGATAAAGCATAACCTTT
1 TACCTTTTCAAGGATAAAGCATAACCTTT
* * * *
31812819 TGCCTTTTCAAGAATCAGGCATAACCTTT
1 TACCTTTTCAAGGATAAAGCATAACCTTT
*
31812848 TACCTTTTTAAGG
1 TACCTTTTCAAGG
31812861 GTTAGGCGTA
Statistics
Matches: 59, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
27 9 0.15
28 16 0.27
29 34 0.58
ACGTcount: A:0.30, C:0.22, G:0.11, T:0.37
Consensus pattern (29 bp):
TACCTTTTCAAGGATAAAGCATAACCTTT
Found at i:31812867 original size:29 final size:28
Alignment explanation
Indices: 31812781--31812876 Score: 102
Period size: 29 Copynumber: 3.4 Consensus size: 28
31812771 ATGGATCAAA
* *
31812781 CATAACCCTTTCCTTTTCAAGGATAAAG
1 CATAACCTTTTCCTTTTCAAGGATAAGG
* *
31812809 CATAACCTTTTGCCTTTTCAAGAATCAGG
1 CATAACCTTTT-CCTTTTCAAGGATAAGG
* * *
31812838 CATAACCTTTTACCTTTTTAAGGGTTAGG
1 CATAACCTTTT-CCTTTTCAAGGATAAGG
*
31812867 CGTAACCTTT
1 CATAACCTTT
31812877 ACAACACTAC
Statistics
Matches: 57, Mismatches: 10, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
28 10 0.18
29 47 0.82
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (28 bp):
CATAACCTTTTCCTTTTCAAGGATAAGG
Found at i:31815322 original size:143 final size:143
Alignment explanation
Indices: 31815038--31815785 Score: 932
Period size: 143 Copynumber: 5.2 Consensus size: 143
31815028 TAGCCAGGAT
* * * *
31815038 GTGTAACAAGAAG-T-TATAACAACATCTAAAAAGCTGTGGT-GTGTAACACTGTCAGAGTAAAA
1 GTGTCACAAGAAGATGTA-AACGACATCTAACAAGCTGT-GTCGTTTAACACTGTCAGAGTAAAA
* *
31815100 CTAAATGGCGTGTAACAAGAAGATGTAAA-TGTTTCTAACAATCCATGGCGTGTAACAATATAAG
64 CTAAATAGCGTGTAACAGGAAGATGTAAACT-TTTCTAACAATCCATGGCGTGTAACAATATAAG
31815164 ACTTTTTTGAAATGGC
128 ACTTTTTTGAAATGGC
* * * * * *
31815180 GTGTCACAAGAAAATGTAAATGACATCTAACAAGCTATGTCATTTAACATTGTCAGAGTTAAACT
1 GTGTCACAAGAAGATGTAAACGACATCTAACAAGCTGTGTCGTTTAACACTGTCAGAGTAAAACT
* * * * * * *
31815245 AATTAACGTGTAACAGGAAGGTGTAAACTTTTCTAACAATCCATAGCATGCAACAATATCAGACT
66 AAATAGCGTGTAACAGGAAGATGTAAACTTTTCTAACAATCCATGGCGTGTAACAATATAAGACT
*
31815310 TTTTTGATATGGC
131 TTTTTGAAATGGC
* * * * *
31815323 GTGTTACAAGAAGATGTAAACGACATCTAACGAGCTGTGGCGTTTAACACCGTTAGAGTAAAACT
1 GTGTCACAAGAAGATGTAAACGACATCTAACAAGCTGTGTCGTTTAACACTGTCAGAGTAAAACT
* * * * *
31815388 AAATAGCATGTAACAGGAAGATGTCAATTTTTCTAACAATCTATGGCGTGTAACAATATAAGATT
66 AAATAGCGTGTAACAGGAAGATGTAAACTTTTCTAACAATCCATGGCGTGTAACAATATAAGACT
31815453 TTTTTGAAATGGC
131 TTTTTGAAATGGC
* * * *
31815466 GTGTCACAAGAAGATGTAGACGACATCTAACAAGCTGTGGT-GCTTAACACTATCAAAGTAAAAC
1 GTGTCACAAGAAGATGTAAACGACATCTAACAAGCTGT-GTCGTTTAACACTGTCAGAGTAAAAC
* * * * *
31815530 TAAATGGCGTGTAATAGAAAGATGTAAACTTTTCTAACAATCTATGGCATGTAACAATATAAGAC
65 TAAATAGCGTGTAACAGGAAGATGTAAACTTTTCTAACAATCCATGGCGTGTAACAATATAAGAC
31815595 TTTTTTGAAATGGC
130 TTTTTTGAAATGGC
* ** * *
31815609 GTGTCACAAGAAGATGTAAACGACATCTAAAAAGCTGTGAGGTTTAACACAGTTAGAGTAAAACT
1 GTGTCACAAGAAGATGTAAACGACATCTAACAAGCTGTGTCGTTTAACACTGTCAGAGTAAAACT
** * * *
31815674 -AATAATGTGTAATAGGAAGATGTAAACTTTTCTAACAATCCATGGCGTGCAATAATATAAGACT
66 AAATAGCGTGTAACAGGAAGATGTAAACTTTTCTAACAATCCATGGCGTGTAACAATATAAGACT
31815738 TTTTTGGAAATGGC
131 TTTTT-GAAATGGC
* * * *
31815752 ATGTCACAAAAAGATTTAAATGACATCTAACAAG
1 GTGTCACAAGAAGATGTAAACGACATCTAACAAG
31815786 AGTTGCTGCT
Statistics
Matches: 517, Mismatches: 82, Indels: 13
0.84 0.13 0.02
Matches are distributed among these distances:
142 75 0.15
143 438 0.85
144 4 0.01
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.28
Consensus pattern (143 bp):
GTGTCACAAGAAGATGTAAACGACATCTAACAAGCTGTGTCGTTTAACACTGTCAGAGTAAAACT
AAATAGCGTGTAACAGGAAGATGTAAACTTTTCTAACAATCCATGGCGTGTAACAATATAAGACT
TTTTTGAAATGGC
Found at i:31815607 original size:71 final size:70
Alignment explanation
Indices: 31815102--31815629 Score: 264
Period size: 71 Copynumber: 7.4 Consensus size: 70
31815092 GAGTAAAACT
* *
31815102 AAATGGCGTGTAACAAGAAGATGTAAA-TGTTTCTAACAATCCATGGCGTGTAACAATATAAGAC
1 AAATGGCGTGT-ACAAGAAGATGTAAACT-TTTCTAACAATCTATGGCATGTAACAATATAAGAC
31815166 TTTTTTG
64 TTTTTTG
* ** * * * * * *
31815173 AAATGGCGTGTCACAAGAAAATGTAAA-TGACATCTAACAAGCTATGTCATTTAACATTGTCAGA
1 AAATGGCGTGT-ACAAGAAGATGTAAACT--TTTCTAACAATCTATGGCATGTAACAATATAAGA
* ***
31815237 GTTAAACT-
63 CTT-TTTTG
* ** * * * * * *
31815245 AATTAACGTGTAACAGGAAGGTGTAAACTTTTCTAACAATCCATAGCATGCAACAATATCAGACT
1 AAATGGCGTGT-ACAAGAAGATGTAAACTTTTCTAACAATCTATGGCATGTAACAATATAAGACT
31815310 TTTTTG
65 TTTTTG
* *** * * * * * *** * *
31815316 ATATGGCGTGTTACAAGAAGATGTAAACGACATCTAACGAGCTGTGGCGTTTAACACCGTTAGAG
1 AAATGGCGTG-TACAAGAAGATGTAAAC-TTTTCTAACAATCTATGGCATGTAACAATATAAGAC
****
31815381 TAAAACT-
64 T-TTTTTG
* * * * * * *
31815388 AAATAGCATGTAACAGGAAGATGTCAATTTTTCTAACAATCTATGGCGTGTAACAATATAAGATT
1 AAATGGCGTGT-ACAAGAAGATGTAAACTTTTCTAACAATCTATGGCATGTAACAATATAAGACT
31815453 TTTTTG
65 TTTTTG
* *** * * *
31815459 AAATGGCGTGTCACAAGAAGATGTAGACGACATCTAACAAGCTGTGG--TGCTTAACACTATCAA
1 AAATGGCGTGT-ACAAGAAGATGTAAAC-TTTTCTAACAATCTATGGCATG--TAACAATAT-AA
* ****
31815522 -AGTAAAACT-
61 GACT-TTTTTG
31815531 AAATGGCGTGTA-ATAGAAAGATGTAAACTTTTCTAACAATCTATGGCATGTAACAATATAAGAC
1 AAATGGCGTGTACA-AG-AAGATGTAAACTTTTCTAACAATCTATGGCATGTAACAATATAAGAC
31815595 TTTTTTG
64 TTTTTTG
31815602 AAATGGCGTGTCACAAGAAGATGTAAAC
1 AAATGGCGTGT-ACAAGAAGATGTAAAC
31815630 GACATCTAAA
Statistics
Matches: 319, Mismatches: 116, Indels: 44
0.67 0.24 0.09
Matches are distributed among these distances:
70 8 0.03
71 167 0.52
72 135 0.42
73 9 0.03
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.29
Consensus pattern (70 bp):
AAATGGCGTGTACAAGAAGATGTAAACTTTTCTAACAATCTATGGCATGTAACAATATAAGACTT
TTTTG
Found at i:31815854 original size:286 final size:283
Alignment explanation
Indices: 31815038--31815904 Score: 939
Period size: 286 Copynumber: 3.0 Consensus size: 283
31815028 TAGCCAGGAT
* * * * *
31815038 GTGTAACAAGAAG-T-TATAACAACATCTAAAAAGCTGTGGTGTGTAACACTGTCAGAGTAAAAC
1 GTGTAACAAGAAGATGTA-AACGACATCTAAAAAGCTGTGGCGTTTAACACAGTTAGAGTAAAAC
* *
31815101 TAAATGGCGTGTAACAAGAAGATGTAAATGTTTCTAACAATCCATGGCGTGTAACAATATAAGAC
65 TAAATAGCGTGTAACAGGAAGATGTAAAT-TTTCTAACAATCCATGGCGTGTAACAATATAAGAC
*
31815166 TTTTTTGAAATGGCGTGTCACAAGAAA-ATGTAAATGACATCTAACAAGCTATGTCAT-TTAACA
129 TTTTTTGAAATGGCGTGTCACAA-AAAGATGTAAATGACATCTAACAAGCTATG-C-TGCTAACA
* * * * * * * * *
31815229 TTGTCAGAGTTAAACTAATTAACGTGTAACAGGAAGGTGTAAACTTTTCTAACAATCCATAGCAT
191 ATATAAGAGTTAAACTAA-TAGCGTGTAATAAGAAGATGTAAACTTTTCTAACAATCTATGGCAT
* * *
31815294 GCAACAATATCAGACTTTTTTGATATGGC
255 GTAACAATATAAGACTTTTTTGAAATGGC
* ** *
31815323 GTGTTACAAGAAGATGTAAACGACATCTAACGAGCTGTGGCGTTTAACACCGTTAGAGTAAAACT
1 GTGTAACAAGAAGATGTAAACGACATCTAAAAAGCTGTGGCGTTTAACACAGTTAGAGTAAAACT
* * * *
31815388 AAATAGCATGTAACAGGAAGATGTCAATTTTTCTAACAATCTATGGCGTGTAACAATATAAGATT
66 AAATAGCGTGTAACAGGAAGATGT-AAATTTTCTAACAATCCATGGCGTGTAACAATATAAGACT
* * * * * *
31815453 TTTTTGAAATGGCGTGTCACAAGAAGATGTAGACGACATCTAACAAGCTGTGGTGCTTAACACTA
130 TTTTTGAAATGGCGTGTCACAAAAAGATGTAAATGACATCTAACAAGCTATGCTGC-TAACAATA
* *
31815518 TCAA-AGTAAAACTAAATGGCGTGTAAT-AGAAAGATGTAAACTTTTCTAACAATCTATGGCATG
194 T-AAGAGTTAAACT-AATAGCGTGTAATAAG-AAGATGTAAACTTTTCTAACAATCTATGGCATG
31815581 TAACAATATAAGACTTTTTTGAAATGGC
256 TAACAATATAAGACTTTTTTGAAATGGC
*
31815609 GTGTCACAAGAAGATGTAAACGACATCTAAAAAGCTGTGAG-GTTTAACACAGTTAGAGTAAAAC
1 GTGTAACAAGAAGATGTAAACGACATCTAAAAAGCTGTG-GCGTTTAACACAGTTAGAGTAAAAC
** * * *
31815673 T-AATAATGTGTAATAGGAAGATGTAAACTTTTCTAACAATCCATGGCGTGCAATAATATAAGAC
65 TAAATAGCGTGTAACAGGAAGATGTAAA-TTTTCTAACAATCCATGGCGTGTAACAATATAAGAC
* * *
31815737 TTTTTTGGAAATGGCATGTCACAAAAAGATTTAAATGACATCTAACAAGAGT-TGCTGCTAACAA
129 TTTTTT-GAAATGGCGTGTCACAAAAAGATGTAAATGACATCTAACAAG-CTATGCTGCTAACAA
* * * *** * * * *** *
31815801 TATAAGACTTCAACATCATAGCACATCATAAGAATATGCAAACGACATCTAACAAGCT-TAGTG-
192 TATAAGAGTTAAAC-TAATAGCGTGTAATAAGAAGATGTAAAC-TTTTCTAACAATCTAT-G-GC
* *
31815864 A-GTAACAATATAAGACTTCTTTGAAATGGT
253 ATGTAACAATATAAGACTTTTTTGAAATGGC
31815894 GTGTAACAAGA
1 GTGTAACAAGA
31815905 TATACTTTTT
Statistics
Matches: 490, Mismatches: 73, Indels: 38
0.82 0.12 0.06
Matches are distributed among these distances:
284 5 0.01
285 139 0.28
286 335 0.68
287 11 0.02
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (283 bp):
GTGTAACAAGAAGATGTAAACGACATCTAAAAAGCTGTGGCGTTTAACACAGTTAGAGTAAAACT
AAATAGCGTGTAACAGGAAGATGTAAATTTTCTAACAATCCATGGCGTGTAACAATATAAGACTT
TTTTGAAATGGCGTGTCACAAAAAGATGTAAATGACATCTAACAAGCTATGCTGCTAACAATATA
AGAGTTAAACTAATAGCGTGTAATAAGAAGATGTAAACTTTTCTAACAATCTATGGCATGTAACA
ATATAAGACTTTTTTGAAATGGC
Found at i:31816041 original size:68 final size:70
Alignment explanation
Indices: 31815914--31816382 Score: 430
Period size: 68 Copynumber: 6.8 Consensus size: 70
31815904 ATATACTTTT
* * *
31815914 TGAAATGGCGTGTCACAAGAAGATGTAAACGACATTTAACAAG-TGTGGCATGTAGCAATATAAG
1 TGAAATGGCGTGTCACAAG-AGATGTAAACGACATCTAACAAGCT-TGGCGTGTAACAATATAAG
31815978 ATTTCAA
64 ATTTCAA
* * *
31815985 TGAAATGACGTGTCAC-AG-GATGTAAACGACATCTAACAAGTTTGGTGTGTAACAATATAAGAC
1 TGAAATGGCGTGTCACAAGAGATGTAAACGACATCTAACAAGCTTGGCGTGTAACAATATAAGA-
*
31816048 TTT--T
65 TTTCAA
* *
31816052 TGAAATGGCATGTCACAAGAAGATGTAAACGACATCTAACAAGCATGGCGTGTAACAATATAAGA
1 TGAAATGGCGTGTCACAAG-AGATGTAAACGACATCTAACAAGCTTGGCGTGTAACAATATAAGA
*
31816117 CTTCAA
65 TTTCAA
* ** *
31816123 TG-AATGGTGTGTCACAA-A-ATGTAATTGACATCTAACAAGCTTGGCGTGCAACAATATAAGAC
1 TGAAATGGCGTGTCACAAGAGATGTAAACGACATCTAACAAGCTTGGCGTGTAACAATATAAGA-
*
31816185 TTT--T
65 TTTCAA
* * * * * * *
31816189 TGAAAT-G-GTGTCACAAGAAAATGTGAATGGCATCTAACAAACGTGGCATGTAACAATATAAGA
1 TGAAATGGCGTGTCACAAG-AGATGTAAACGACATCTAACAAGCTTGGCGTGTAACAATATAAGA
*
31816252 CTTCAA
65 TTTCAA
* * * * *
31816258 TTAAATGGCGTGTTAC-A-AGATGTAAACGATATCTAACAAGTTTGGCTTGTAACAATATAAGAA
1 TGAAATGGCGTGTCACAAGAGATGTAAACGACATCTAACAAGCTTGGCGTGTAACAATATAAG-A
*
31816321 TTT--T
65 TTTCAA
* * * * * *
31816325 TGAAATGGTGTGTAACAAGAAAATATTAACGACATCTAACAAGCTGTAGCGTGTAACA
1 TGAAATGGCGTGTCACAAG-AGATGTAAACGACATCTAACAAGCT-TGGCGTGTAACA
31816383 CCATATGAGT
Statistics
Matches: 324, Mismatches: 53, Indels: 42
0.77 0.13 0.10
Matches are distributed among these distances:
65 9 0.03
66 3 0.01
67 72 0.22
68 115 0.35
69 14 0.04
70 78 0.24
71 33 0.10
ACGTcount: A:0.39, C:0.14, G:0.20, T:0.27
Consensus pattern (70 bp):
TGAAATGGCGTGTCACAAGAGATGTAAACGACATCTAACAAGCTTGGCGTGTAACAATATAAGAT
TTCAA
Found at i:31816080 original size:138 final size:138
Alignment explanation
Indices: 31815890--31816382 Score: 627
Period size: 138 Copynumber: 3.6 Consensus size: 138
31815880 TTCTTTGAAA
* * * *
31815890 TGGTGTGTAACAAGAT-ATACTTTTTGAAATGGCGTGTCACAAGAAGATGTAAACGACATTTAAC
1 TGGTGTGTAACAATATAAGACTTTTTGAAATGGCGTGTCACAAGAAAATGTAAACGACATCTAAC
* * * * *
31815954 AAGTGTGGCATGTAGCAATATAAGATTTCAATGAAATGACGTGTCACAGGATGTAAACGACATCT
66 AAGCGTGGCATGTAACAATATAAGACTTCAATGAAATGGCGTGTCACAAGATGTAAACGACATCT
31816019 AACAAGTT
131 AACAAGTT
* *
31816027 TGGTGTGTAACAATATAAGACTTTTTGAAATGGCATGTCACAAGAAGATGTAAACGACATCTAAC
1 TGGTGTGTAACAATATAAGACTTTTTGAAATGGCGTGTCACAAGAAAATGTAAACGACATCTAAC
* * * * **
31816092 AAGCATGGCGTGTAACAATATAAGACTTCAATG-AATGGTGTGTCACAAAATGTAATTGACATCT
66 AAGCGTGGCATGTAACAATATAAGACTTCAATGAAATGGCGTGTCACAAGATGTAAACGACATCT
*
31816156 AACAAGCT
131 AACAAGTT
* * * * *
31816164 TGGCGTGCAACAATATAAGACTTTTTGAAAT-G-GTGTCACAAGAAAATGTGAATGGCATCTAAC
1 TGGTGTGTAACAATATAAGACTTTTTGAAATGGCGTGTCACAAGAAAATGTAAACGACATCTAAC
* * * *
31816227 AAACGTGGCATGTAACAATATAAGACTTCAATTAAATGGCGTGTTACAAGATGTAAACGATATCT
66 AAGCGTGGCATGTAACAATATAAGACTTCAATGAAATGGCGTGTCACAAGATGTAAACGACATCT
31816292 AACAAGTT
131 AACAAGTT
* * * * *
31816300 TGGCT-TGTAACAATATAAGAATTTTTGAAATGGTGTGTAACAAGAAAATATTAACGACATCTAA
1 TGG-TGTGTAACAATATAAGACTTTTTGAAATGGCGTGTCACAAGAAAATGTAAACGACATCTAA
* *
31816364 CAAGCTGTAGCGTGTAACA
65 CAAGC-GTGGCATGTAACA
31816383 CCATATGAGT
Statistics
Matches: 305, Mismatches: 45, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
135 55 0.18
136 60 0.20
137 77 0.25
138 102 0.33
139 11 0.04
ACGTcount: A:0.39, C:0.14, G:0.20, T:0.28
Consensus pattern (138 bp):
TGGTGTGTAACAATATAAGACTTTTTGAAATGGCGTGTCACAAGAAAATGTAAACGACATCTAAC
AAGCGTGGCATGTAACAATATAAGACTTCAATGAAATGGCGTGTCACAAGATGTAAACGACATCT
AACAAGTT
Found at i:31816589 original size:13 final size:13
Alignment explanation
Indices: 31816568--31816598 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
31816558 ATTTATCATT
*
31816568 ACAAACTAGAATA
1 ACAAGCTAGAATA
31816581 ACAAGCTAGAATA
1 ACAAGCTAGAATA
31816594 ACAAG
1 ACAAG
31816599 ATGTTGAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.58, C:0.16, G:0.13, T:0.13
Consensus pattern (13 bp):
ACAAGCTAGAATA
Found at i:31819537 original size:3 final size:3
Alignment explanation
Indices: 31819529--31819557 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
31819519 ATATTGTTAT
31819529 TAC TAC TAC TAC TAC TAC TAC TAC TAC TA
1 TAC TAC TAC TAC TAC TAC TAC TAC TAC TA
31819558 GAGATAAAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.31, G:0.00, T:0.34
Consensus pattern (3 bp):
TAC
Found at i:31820986 original size:10 final size:10
Alignment explanation
Indices: 31820954--31821009 Score: 51
Period size: 10 Copynumber: 5.5 Consensus size: 10
31820944 TAATGTAGAG
31820954 AAATAAAATAA
1 AAAT-AAATAA
31820965 ATAATAAATAA
1 A-AATAAATAA
*
31820976 AAATAACTAA
1 AAATAAATAA
* *
31820986 AAAGAAA-AT
1 AAATAAATAA
*
31820995 AAATAAAAAA
1 AAATAAATAA
31821005 AAATA
1 AAATA
31821010 TTTTTTTTAT
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
9 7 0.19
10 19 0.51
11 8 0.22
12 3 0.08
ACGTcount: A:0.79, C:0.02, G:0.02, T:0.18
Consensus pattern (10 bp):
AAATAAATAA
Found at i:31821395 original size:12 final size:11
Alignment explanation
Indices: 31821371--31821409 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
31821361 GTTTTTTTCC
*
31821371 TTTTTTCATTT
1 TTTTTTCAATT
31821382 TTTTTTCAAATT
1 TTTTTTC-AATT
*
31821394 TTTTTTGAATT
1 TTTTTTCAATT
31821405 TTTTT
1 TTTTT
31821410 GAAATATTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
11 16 0.64
12 9 0.36
ACGTcount: A:0.15, C:0.05, G:0.03, T:0.77
Consensus pattern (11 bp):
TTTTTTCAATT
Found at i:31821469 original size:13 final size:12
Alignment explanation
Indices: 31821450--31821491 Score: 57
Period size: 12 Copynumber: 3.4 Consensus size: 12
31821440 ACACGAAAAG
31821450 TTTTTTTTTAAA
1 TTTTTTTTTAAA
*
31821462 TATTTTTTTTGAA
1 T-TTTTTTTTAAA
*
31821475 TTTTTTTTTGAA
1 TTTTTTTTTAAA
31821487 TTTTT
1 TTTTT
31821492 AAAATTTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
12 17 0.61
13 11 0.39
ACGTcount: A:0.19, C:0.00, G:0.05, T:0.76
Consensus pattern (12 bp):
TTTTTTTTTAAA
Found at i:31822995 original size:21 final size:21
Alignment explanation
Indices: 31822971--31823011 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
31822961 AGTCCTTACC
*
31822971 ATAAATGCTTCAGTCTTTGTT
1 ATAAATGCATCAGTCTTTGTT
31822992 ATAAATGCATCAGTCTTTGT
1 ATAAATGCATCAGTCTTTGT
31823012 CATGAATTGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.44
Consensus pattern (21 bp):
ATAAATGCATCAGTCTTTGTT
Found at i:31827812 original size:26 final size:27
Alignment explanation
Indices: 31827783--31827839 Score: 89
Period size: 26 Copynumber: 2.1 Consensus size: 27
31827773 GTTACACACA
* *
31827783 ATGTGCATAACAAT-TTTCTACCCGCC
1 ATGTGCATAACAATGTTGCTACCCACC
31827809 ATGTGCATAACAATGTTGCTACCCACC
1 ATGTGCATAACAATGTTGCTACCCACC
31827836 ATGT
1 ATGT
31827840 TCAAGAACAG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
26 14 0.50
27 14 0.50
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.30
Consensus pattern (27 bp):
ATGTGCATAACAATGTTGCTACCCACC
Found at i:31827911 original size:25 final size:25
Alignment explanation
Indices: 31827882--31827990 Score: 94
Period size: 27 Copynumber: 4.2 Consensus size: 25
31827872 AGAAATATTT
*
31827882 CTACATGCCGTGT-TCAATGATTTTG
1 CTACATGCCATGTGT-AATGATTTTG
31827907 CTACATGCCATGTGTAATGATTTTG
1 CTACATGCCATGTGTAATGATTTTG
* **
31827932 CTACACGCCATGTGCATAACAATTTTG
1 CTACATGCCATGTG--TAATGATTTTG
** **
31827959 CTACACACCATGTGCATAACAATTTTG
1 CTACATGCCATGTG--TAATGATTTTG
31827986 CTACA
1 CTACA
31827991 CCATTTTCAA
Statistics
Matches: 76, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
25 35 0.46
26 1 0.01
27 40 0.53
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.34
Consensus pattern (25 bp):
CTACATGCCATGTGTAATGATTTTG
Found at i:31827961 original size:27 final size:27
Alignment explanation
Indices: 31827901--31827991 Score: 132
Period size: 27 Copynumber: 3.4 Consensus size: 27
31827891 GTGTTCAATG
* **
31827901 ATTTTGCTACATGCCATGTG--TAATG
1 ATTTTGCTACACGCCATGTGCATAACA
31827926 ATTTTGCTACACGCCATGTGCATAACA
1 ATTTTGCTACACGCCATGTGCATAACA
*
31827953 ATTTTGCTACACACCATGTGCATAACA
1 ATTTTGCTACACGCCATGTGCATAACA
31827980 ATTTTGCTACAC
1 ATTTTGCTACAC
31827992 CATTTTCAAA
Statistics
Matches: 60, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
25 19 0.32
27 41 0.68
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.34
Consensus pattern (27 bp):
ATTTTGCTACACGCCATGTGCATAACA
Found at i:31828063 original size:158 final size:157
Alignment explanation
Indices: 31827783--31828069 Score: 348
Period size: 158 Copynumber: 1.8 Consensus size: 157
31827773 GTTACACACA
* *
31827783 ATGTGCATAACAATTTTCTACCCGCCATGTGCATAACAATGTTGCTACCCACCATGTTCAAGAAC
1 ATGTGCATAACAATTTTCTACACACCATGTGCATAACAATGTTGCTA-CCACCATGTTCAAGAAC
* * * * ** ** *
31827848 AGTATGCTACAAGACATTTTTTAAAGAAATATTTCTACATGCCGTGTTCAATGATTTTGCTACAT
65 AGTATGCTACAAGACATCTTTAAAAAAAAAATTTCTACACCCCAAGTACAATGATTTTGCTACAT
31827913 GCCATGTGTAATGATTTTGCTACACGCC
130 GCCATGTGTAATGATTTTGCTACACGCC
* *
31827941 ATGTGCATAACAATTTTGCTACACACCATGTGCATAACAATTTTGCTA-CACCATTTTCAAAAGA
1 ATGTGCATAACAATTTT-CTACACACCATGTGCATAACAATGTTGCTACCACCATGTTC--AAGA
* * *
31828005 A-A-TATTTCTACAGGCCATCTTTAACAAAAAAAATTT-TACACCCCAAGTACAATGATTTTGCT
63 ACAGTA-TGCTACAAGACATCTTTAA-AAAAAAAATTTCTACACCCCAAGTACAATGATTTTGCT
31828067 ACA
126 ACA
31828070 CGTTATATTT
Statistics
Matches: 108, Mismatches: 16, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
157 11 0.10
158 56 0.52
159 41 0.38
ACGTcount: A:0.33, C:0.22, G:0.13, T:0.32
Consensus pattern (157 bp):
ATGTGCATAACAATTTTCTACACACCATGTGCATAACAATGTTGCTACCACCATGTTCAAGAACA
GTATGCTACAAGACATCTTTAAAAAAAAAATTTCTACACCCCAAGTACAATGATTTTGCTACATG
CCATGTGTAATGATTTTGCTACACGCC
Found at i:31828471 original size:9 final size:9
Alignment explanation
Indices: 31828429--31828503 Score: 55
Period size: 9 Copynumber: 8.3 Consensus size: 9
31828419 TGGATGGCAA
*
31828429 GAGAGATTT
1 GAGAGAGTT
* *
31828438 GACAGAGCT
1 GAGAGAGTT
*
31828447 GAGAAAGCTT
1 GAGAGAG-TT
31828457 -AGAGAGTT
1 GAGAGAGTT
*
31828465 GATAGAGTT
1 GAGAGAGTT
31828474 GAGAGAGTT
1 GAGAGAGTT
31828483 GAG-GAAGTT
1 GAGAG-AGTT
* *
31828492 AAGATAGTT
1 GAGAGAGTT
31828501 GAG
1 GAG
31828504 CATATGGCGG
Statistics
Matches: 50, Mismatches: 12, Indels: 8
0.71 0.17 0.11
Matches are distributed among these distances:
8 3 0.06
9 46 0.92
10 1 0.02
ACGTcount: A:0.36, C:0.04, G:0.36, T:0.24
Consensus pattern (9 bp):
GAGAGAGTT
Found at i:31831333 original size:22 final size:21
Alignment explanation
Indices: 31831284--31831338 Score: 60
Period size: 22 Copynumber: 2.7 Consensus size: 21
31831274 AACATTTGTC
*
31831284 TCACATCAAC--ATAATCATG
1 TCACATCAACATATAATCACG
*
31831303 TCACATCAATATATAATCAACG
1 TCACATCAACATATAATC-ACG
*
31831325 TCACGTCAACATAT
1 TCACATCAACATAT
31831339 TTAAGTTTAG
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
19 9 0.31
21 6 0.21
22 14 0.48
ACGTcount: A:0.42, C:0.25, G:0.05, T:0.27
Consensus pattern (21 bp):
TCACATCAACATATAATCACG
Found at i:31845873 original size:21 final size:21
Alignment explanation
Indices: 31845832--31845873 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
31845822 TTATTGAAAT
* *
31845832 TTTATAACTAAATCAAGATTG
1 TTTAGAACTAAATCAAAATTG
31845853 TTTAGAACTAAAT-AACAATTG
1 TTTAGAACTAAATCAA-AATTG
31845874 ATTATCATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 2 0.11
21 16 0.89
ACGTcount: A:0.45, C:0.10, G:0.10, T:0.36
Consensus pattern (21 bp):
TTTAGAACTAAATCAAAATTG
Found at i:31854700 original size:14 final size:13
Alignment explanation
Indices: 31854681--31854719 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
31854671 AACAATTTTT
*
31854681 TTTTAAGAATAAAA
1 TTTTAA-AAAAAAA
31854695 TTTTAAAAAAAAA
1 TTTTAAAAAAAAA
*
31854708 GTTTAAAAAAAA
1 TTTTAAAAAAAA
31854720 GCTATAAGGA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 17 0.74
14 6 0.26
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (13 bp):
TTTTAAAAAAAAA
Found at i:31860631 original size:8 final size:8
Alignment explanation
Indices: 31860620--31860671 Score: 59
Period size: 8 Copynumber: 6.0 Consensus size: 8
31860610 TACACGTTTA
31860620 AACACGAT
1 AACACGAT
31860628 AACACGATT
1 AACACGA-T
31860637 AAACACGAT
1 -AACACGAT
*
31860646 AACACGGTT
1 AACAC-GAT
31860655 AAACACGAT
1 -AACACGAT
31860664 AACACGAT
1 AACACGAT
31860672 TAAGTAAATG
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
8 20 0.53
9 6 0.16
10 12 0.32
ACGTcount: A:0.48, C:0.23, G:0.13, T:0.15
Consensus pattern (8 bp):
AACACGAT
Found at i:31860632 original size:18 final size:18
Alignment explanation
Indices: 31860611--31860674 Score: 110
Period size: 18 Copynumber: 3.6 Consensus size: 18
31860601 TGTCACGTAT
*
31860611 ACACGTTTAAACACGATA
1 ACACGATTAAACACGATA
31860629 ACACGATTAAACACGATA
1 ACACGATTAAACACGATA
*
31860647 ACACGGTTAAACACGATA
1 ACACGATTAAACACGATA
31860665 ACACGATTAA
1 ACACGATTAA
31860675 GTAAATGCAT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 43 1.00
ACGTcount: A:0.47, C:0.22, G:0.12, T:0.19
Consensus pattern (18 bp):
ACACGATTAAACACGATA
Found at i:31862413 original size:9 final size:9
Alignment explanation
Indices: 31862381--31862439 Score: 58
Period size: 9 Copynumber: 7.2 Consensus size: 9
31862371 TAATAGAAAA
*
31862381 ATATATATT
1 ATATATAAT
*
31862390 TTATATAA-
1 ATATATAAT
31862398 AT-T-TAAT
1 ATATATAAT
31862405 ATATATAAT
1 ATATATAAT
31862414 AT-TAT-AT
1 ATATATAAT
31862421 ATAT-TAAT
1 ATATATAAT
31862429 ATATATAAT
1 ATATATAAT
31862438 AT
1 AT
31862440 TAGTTTTTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 12
0.73 0.05 0.21
Matches are distributed among these distances:
6 3 0.07
7 8 0.20
8 12 0.29
9 18 0.44
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (9 bp):
ATATATAAT
Found at i:31862421 original size:12 final size:12
Alignment explanation
Indices: 31862404--31862441 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
31862394 ATAAATTTAA
31862404 TATATATAATAT
1 TATATATAATAT
* *
31862416 TATATATATTAA
1 TATATATAATAT
31862428 TATATATAATAT
1 TATATATAATAT
31862440 TA
1 TA
31862442 GTTTTTTTTA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (12 bp):
TATATATAATAT
Found at i:31862427 original size:24 final size:25
Alignment explanation
Indices: 31862381--31862441 Score: 90
Period size: 24 Copynumber: 2.5 Consensus size: 25
31862371 TAATAGAAAA
*
31862381 ATATAT-ATTTTATATAAATTTAAT
1 ATATATAATATTATATAAATTTAAT
*
31862405 ATATATAATATTATATATA-TTAAT
1 ATATATAATATTATATAAATTTAAT
31862429 ATATATAATATTA
1 ATATATAATATTA
31862442 GTTTTTTTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
24 24 0.71
25 10 0.29
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (25 bp):
ATATATAATATTATATAAATTTAAT
Found at i:31875667 original size:25 final size:26
Alignment explanation
Indices: 31875633--31875681 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
31875623 GGACCAAATA
*
31875633 AAATTGTACTTATTTTA-TTTTTACC
1 AAATTATACTTATTTTACTTTTTACC
31875658 AAATTATACTTATTTTACTTTTTA
1 AAATTATACTTATTTTACTTTTTA
31875682 TATTAGATAC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 16 0.73
26 6 0.27
ACGTcount: A:0.31, C:0.10, G:0.02, T:0.57
Consensus pattern (26 bp):
AAATTATACTTATTTTACTTTTTACC
Found at i:31879008 original size:15 final size:16
Alignment explanation
Indices: 31878977--31879019 Score: 54
Period size: 15 Copynumber: 2.7 Consensus size: 16
31878967 CTATTTTCTG
31878977 TTAACATTATAAAAATTA
1 TTAAC-TTAT-AAAATTA
31878995 -TAACTTATAAAATTA
1 TTAACTTATAAAATTA
31879010 TTAA-TTATAA
1 TTAACTTATAA
31879020 TATATNAGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
15 13 0.54
16 7 0.29
17 4 0.17
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (16 bp):
TTAACTTATAAAATTA
Found at i:31879084 original size:249 final size:253
Alignment explanation
Indices: 31878799--31879280 Score: 692
Period size: 255 Copynumber: 1.9 Consensus size: 253
31878789 AAAATCCATA
* * * * *
31878799 TAGTTAATTAAATTAATTCATGAAATTATGATTATTAATTACCTTGTAATGTCTTTTAATATATG
1 TAGTTAATTAAATTAATTCATAAAACTATAATTATTAATTAACTTGTAATGTCTTTTAATATATA
*
31878864 TAG-TTTA-A-ATATT-GTGTTAATTTAT-AAGAAATATAATGACTATTATATATATACTAAAAT
66 T-GCTTTATATATATTAG-GTTAATTTATGAAG-AATATAATGAATATTATATATATACTAAAAT
* *
31878924 ATTTTTA-AT-T-TATATATATTTTAAATATAAACATATTTACTTTCTATTTTCTGTTAACATTA
128 ACTTTTAGATATATATATATATTTTAAATATAAACATATTTACTTTCTATTTTCTATTAACATTA
* *
31878986 TAAAAATTATAACTTATAAAATTATTAATTATAATATATNAGTAATTAAGGACAAACGCATG
193 CAAAAATTATAACTTATAAAATTATTAATTACAATATAT-AGTAATTAAGGACAAACGCATG
*
31879048 TAGTTAATTAAATTAATTTATAAAACTATAATTATTAATTAACTTGTAATGTCTTTTAATATATA
1 TAGTTAATTAAATTAATTCATAAAACTATAATTATTAATTAACTTGTAATGTCTTTTAATATATA
* * * *
31879113 TGCTTTATATATATTAGGTTCATTTATGAAGAATATAATTAATATTATATATGTATTAAAATACT
66 TGCTTTATATATATTAGGTTAATTTATGAAGAATATAATGAATATTATATATATACTAAAATACT
* * *
31879178 TTTAGGATATATATATGTATTTTAAATATAAACATATTTACTTTTTATTTTGTATTAACATTACA
131 TTTA-GATATATATATATATTTTAAATATAAACATATTTACTTTCTATTTTCTATTAACATTACA
*
31879243 AAAATTATAATTTATAAAATTATTAATTACAATATATA
195 AAAATTATAACTTATAAAATTATTAATTACAATATATA
31879281 TACTTTTATT
Statistics
Matches: 205, Mismatches: 19, Indels: 13
0.86 0.08 0.05
Matches are distributed among these distances:
248 1 0.00
249 64 0.31
250 1 0.00
251 47 0.23
252 4 0.02
253 2 0.01
254 2 0.01
255 84 0.41
ACGTcount: A:0.42, C:0.05, G:0.06, T:0.46
Consensus pattern (253 bp):
TAGTTAATTAAATTAATTCATAAAACTATAATTATTAATTAACTTGTAATGTCTTTTAATATATA
TGCTTTATATATATTAGGTTAATTTATGAAGAATATAATGAATATTATATATATACTAAAATACT
TTTAGATATATATATATATTTTAAATATAAACATATTTACTTTCTATTTTCTATTAACATTACAA
AAATTATAACTTATAAAATTATTAATTACAATATATAGTAATTAAGGACAAACGCATG
Found at i:31883206 original size:37 final size:38
Alignment explanation
Indices: 31883165--31883238 Score: 114
Period size: 37 Copynumber: 2.0 Consensus size: 38
31883155 TGTTTAATAG
* *
31883165 GAAGAGTTTTATCTTGCAGA-GAATCTTAGTTTGATTA
1 GAAGAGTTTTATCTTGCAAAGGAATCCTAGTTTGATTA
*
31883202 GAAGAGTTTTGTCTTGCAAAGGAATCCTAGTTTGATT
1 GAAGAGTTTTATCTTGCAAAGGAATCCTAGTTTGATT
31883239 GGGATAGCGA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
37 18 0.55
38 15 0.45
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.39
Consensus pattern (38 bp):
GAAGAGTTTTATCTTGCAAAGGAATCCTAGTTTGATTA
Found at i:31885102 original size:34 final size:34
Alignment explanation
Indices: 31885064--31885130 Score: 118
Period size: 35 Copynumber: 2.0 Consensus size: 34
31885054 TTAATGTAAC
31885064 AAGTTCTC-ACTTTCTCTCTTTTTTTTTTTTTTT
1 AAGTTCTCTACTTTCTCTCTTTTTTTTTTTTTTT
31885097 NAAGTTCTCTACTTTCTCTCTTTTTTTTTTTTTT
1 -AAGTTCTCTACTTTCTCTCTTTTTTTTTTTTTT
31885131 CTTGATGCAA
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
34 8 0.25
35 24 0.75
ACGTcount: A:0.09, C:0.18, G:0.03, T:0.69
Consensus pattern (34 bp):
AAGTTCTCTACTTTCTCTCTTTTTTTTTTTTTTT
Found at i:31889865 original size:11 final size:11
Alignment explanation
Indices: 31889849--31889876 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
31889839 CTCATATTGT
31889849 AAATTTTTTGA
1 AAATTTTTTGA
31889860 AAATTTTTTGA
1 AAATTTTTTGA
31889871 AAATTT
1 AAATTT
31889877 GTGACACATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.39, C:0.00, G:0.07, T:0.54
Consensus pattern (11 bp):
AAATTTTTTGA
Found at i:31893948 original size:3 final size:3
Alignment explanation
Indices: 31893940--31893995 Score: 55
Period size: 3 Copynumber: 18.7 Consensus size: 3
31893930 GTTTACATAT
*
31893940 TTA TTA TTA TT- TTA TTA TTA TTTA TT- TTT TTAA TGTA -TA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TT-A T-TA TTA TTA TTA
31893985 TTA TTA TTA TT
1 TTA TTA TTA TT
31893996 TAACAAAAAT
Statistics
Matches: 46, Mismatches: 1, Indels: 12
0.78 0.02 0.20
Matches are distributed among these distances:
2 6 0.13
3 34 0.74
4 5 0.11
5 1 0.02
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.70
Consensus pattern (3 bp):
TTA
Found at i:31894949 original size:12 final size:12
Alignment explanation
Indices: 31894920--31894957 Score: 51
Period size: 12 Copynumber: 3.1 Consensus size: 12
31894910 CTCCTTAACT
31894920 TTTTTTTC-TTC
1 TTTTTTTCTTTC
31894931 TTCTTTTTTCTTTC
1 -T-TTTTTTCTTTC
31894945 TTTTTTTCTTTC
1 TTTTTTTCTTTC
31894957 T
1 T
31894958 CTCTTCAACT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
12 13 0.54
13 8 0.33
14 3 0.12
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (12 bp):
TTTTTTTCTTTC
Found at i:31895618 original size:16 final size:17
Alignment explanation
Indices: 31895597--31895640 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
31895587 AGCTTCTTCT
31895597 TTTTTTTTTA-ATTTAA
1 TTTTTTTTTACATTTAA
*
31895613 TTTTTTTTTACTTTTAA
1 TTTTTTTTTACATTTAA
31895630 TTTTTTATTTA
1 TTTTTT-TTTA
31895641 TTATTATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 10 0.40
17 11 0.44
18 4 0.16
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.77
Consensus pattern (17 bp):
TTTTTTTTTACATTTAA
Found at i:31895618 original size:17 final size:18
Alignment explanation
Indices: 31895596--31895640 Score: 58
Period size: 16 Copynumber: 2.6 Consensus size: 18
31895586 CAGCTTCTTC
31895596 TTTTTTTTTTA-ATTTAA
1 TTTTTTTTTTACATTTAA
*
31895613 -TTTTTTTTTACTTTTAA
1 TTTTTTTTTTACATTTAA
*
31895630 TTTTTTATTTA
1 TTTTTTTTTTA
31895641 TTATTATTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 10 0.42
17 5 0.21
18 9 0.38
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.78
Consensus pattern (18 bp):
TTTTTTTTTTACATTTAA
Found at i:31895941 original size:21 final size:22
Alignment explanation
Indices: 31895915--31895971 Score: 82
Period size: 21 Copynumber: 2.7 Consensus size: 22
31895905 TGAAACTAAT
*
31895915 TACCCGGAGGTTTTAGGA-ATG
1 TACCCGGAGGTTTTAGAAGATG
31895936 TACCCGGAGGTTTT-GAAGATG
1 TACCCGGAGGTTTTAGAAGATG
*
31895957 TACTCGGAGGTTTTA
1 TACCCGGAGGTTTTA
31895972 AAAAGAAAGA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
20 2 0.06
21 30 0.94
ACGTcount: A:0.23, C:0.14, G:0.32, T:0.32
Consensus pattern (22 bp):
TACCCGGAGGTTTTAGAAGATG
Found at i:31896002 original size:122 final size:122
Alignment explanation
Indices: 31895764--31896004 Score: 330
Period size: 122 Copynumber: 2.0 Consensus size: 122
31895754 ACGAGATTGT
*
31895764 ATAACTTTGCAAAAATCTTAAAACTAATTATCCGGAGGTTTTGGAAAATATACCCGAAGGTTTTG
1 ATAACTTTGCAAAAATCTTAAAACTAATTACCCGGAGGTTTTGG-AAATATACCCGAAGGTTTTG
* *
31895829 AAGATGTACCTAGAGGTTTTAAAAGAAAATGTCATTCCTCATCTCAGAATGAGGCTAC
65 AAGATGTACCTAGAGGTTTTAAAAGAAAATGTCATCCCTCATCTCAAAATGAGGCTAC
* * *
31895887 ATAACTTTG-AAGAAATCTTGAAACTAATTACCCGGAGGTTTTAGG-AATGTACCCGGAGGTTTT
1 ATAACTTTGCAA-AAATCTTAAAACTAATTACCCGGAGGTTTT-GGAAATATACCCGAAGGTTTT
*
31895950 GAAGATGTA-CTCGGAGGTTTTAAAAAGAAAGAT-T-ATCCCTCATCTCAAAATGAGG
64 GAAGATGTACCT-AGAGGTTTT-AAAAGAAA-ATGTCATCCCTCATCTCAAAATGAGG
31896005 ATATGTAATT
Statistics
Matches: 106, Mismatches: 7, Indels: 11
0.85 0.06 0.09
Matches are distributed among these distances:
121 2 0.02
122 54 0.51
123 46 0.43
124 4 0.04
ACGTcount: A:0.36, C:0.15, G:0.20, T:0.29
Consensus pattern (122 bp):
ATAACTTTGCAAAAATCTTAAAACTAATTACCCGGAGGTTTTGGAAATATACCCGAAGGTTTTGA
AGATGTACCTAGAGGTTTTAAAAGAAAATGTCATCCCTCATCTCAAAATGAGGCTAC
Found at i:31896076 original size:31 final size:31
Alignment explanation
Indices: 31896027--31898021 Score: 628
Period size: 31 Copynumber: 65.2 Consensus size: 31
31896017 AATTCTCTTG
* *
31896027 TGCCAAGATAACTAGGCTTAAACATCTTAGA
1 TGCCAATATAACTGGGCTTAAACATCTTAGA
* * * * *
31896058 TGCTAGT-TAAATTGGGCTTGAACATCTCAG-
1 TGCCAATAT-AACTGGGCTTAAACATCTTAGA
*
31896088 TGCCAATATAACTGGGCTTAAACATCTTGGA
1 TGCCAATATAACTGGGCTTAAACATCTTAGA
* * **
31896119 TGTCAACTA-AATTGGG-TTGAAAC-TCTTTTTA
1 TGCCAA-TATAACTGGGCTT-AAACATC-TTAGA
** ** * *
31896150 TGCCAACGTAACTGAACTTATACATCTTGGA
1 TGCCAATATAACTGGGCTTAAACATCTTAGA
* * * * *
31896181 TGCCAGCTA-AATTGAGCTGAAAC-TCTTTTTG-
1 TGCCA-ATATAACTGGGCTTAAACATC--TTAGA
** * * * * *
31896212 TGCCAACGTAATTGGACTTATACATATTGGA
1 TGCCAATATAACTGGGCTTAAACATCTTAGA
* * * *
31896243 TGCCAGCTA-AATTAGGCTTAAACATCTTTG-
1 TGCCA-ATATAACTGGGCTTAAACATCTTAGA
* *
31896273 TGCCAATATAACTAGGCTTAAACATCTTGGA
1 TGCCAATATAACTGGGCTTAAACATCTTAGA
* * *
31896304 TGCCAGCT-TAATTGGGCTTAAAC-TCTTTTTG-
1 TGCCA-ATATAACTGGGCTTAAACATC--TTAGA
** * *
31896335 TGCCAACGTAACTGGACTTAAACATCTTGGA
1 TGCCAATATAACTGGGCTTAAACATCTTAGA
* * *
31896366 TGCCAAGTA-AATTGGGCTAAAACATCTTTG-
1 TGCCAA-TATAACTGGGCTTAAACATCTTAGA
* *
31896396 TGCCAATATAACTCGGCTTAAACATCTTGGA
1 TGCCAATATAACTGGGCTTAAACATCTTAGA
* * * * * *
31896427 TGCCAGCT-TAATTAGGCTTAAACTTTTTTG-
1 TGCCA-ATATAACTGGGCTTAAACATCTTAGA
* * * *
31896457 TGCCAACATAACTAGACTTAAACATCTTGGA
1 TGCCAATATAACTGGGCTTAAACATCTTAGA
* * * * * *
31896488 TGCC-ATGTAAATTGGACTTAATC-T-TTTGG
1 TGCCAATAT-AACTGGGCTTAAACATCTTAGA
* ** * *
31896517 TGCCAACATAGTTAGGCTTGAACATCTTAGA
1 TGCCAATATAACTGGGCTTAAACATCTTAGA
* * * * * *
31896548 TGCTAGCTA-AATTGGGCTTAATCGTCTT-TA
1 TGCCA-ATATAACTGGGCTTAAACATCTTAGA
* *
31896578 TGCCAATATAACTGGGCGTAAACATCTTGGA
1 TGCCAATATAACTGGGCTTAAACATCTTAGA
* * * *
31896609 TGCCAGCT-TAATTAGGCTTAAAC-TCTTTTTG-
1 TGCCA-ATATAACTGGGCTTAAACATC--TTAGA
* ** * *
31896640 TACCAACGTAACTGGACTTAAACATCTTGGA
1 TGCCAATATAACTGGGCTTAAACATCTTAGA
* * * *
31896671 TGCCAGGTA-AATTGGACTTAAATC-TCTTTG-
1 TGCCA-ATATAACTGGGCTTAAA-CATCTTAGA
* *
31896701 TGCCAATATAGCTAGGCTTAAACATCTTAGA
1 TGCCAATATAACTGGGCTTAAACATCTTAGA
* * * * * * *
31896732 TGCTAGCTA-AATTTGGCTTAATCGTCTT-TA
1 TGCCA-ATATAACTGGGCTTAAACATCTTAGA
* *
31896762 TGCCAATATAATTGGGCTTAAACATCTTGGA
1 TGCCAATATAACTGGGCTTAAACATCTTAGA
* * *
31896793 TGCCAGT-TACATTGGGCTTAAAC-TCCTTCG-
1 TGCCAATATA-ACTGGGCTTAAACAT-CTTAGA
* * * *
31896823 TGCCAACATAACTGGACTTAAACATCCTGGA
1 TGCCAATATAACTGGGCTTAAACATCTTAGA
* * *
31896854 TGCCAGT-TAAATTGGGCTTAAACATCTTTG-
1 TGCCAATAT-AACTGGGCTTAAACATCTTAGA
** * *
31896884 TGCCAACGTAGCTAGGCTTAAACATCTTAGA
1 TGCCAATATAACTGGGCTTAAACATCTTAGA
* * * *
31896915 TGCTAGCTA-AATTGGGCTTAAATC-TCTTTG-
1 TGCCA-ATATAACTGGGCTTAAA-CATCTTAGA
* * ** *
31896945 TGCCAACATAGCTATGCTTAAACATCTTGGA
1 TGCCAATATAACTGGGCTTAAACATCTTAGA
* * * * *** *
31896976 TGCTAGCTA-AATTAGGCTTAATTGTCTT-TA
1 TGCCA-ATATAACTGGGCTTAAACATCTTAGA
* *
31897006 TGCCAATATAACTAGGCTTAAACATCTTGGA
1 TGCCAATATAACTGGGCTTAAACATCTTAGA
* * * * **
31897037 TGCTAGCTA-AATTGGGCTGAAAC-TCTTTTTA
1 TGCCA-ATATAACTGGGCTTAAACATC-TTAGA
** * * * *
31897068 TGCCAACGTAACTAGACTTATACATCTTGGA
1 TGCCAATATAACTGGGCTTAAACATCTTAGA
* * *
31897099 TG-CAAGCTA-AATTGGGCTGAAAC-TCTTTTTG-
1 TGCCAA--TATAACTGGGCTTAAACATC--TTAGA
** * * * *
31897130 TGCCAACGTAACTAGACTTATACATCTTGGA
1 TGCCAATATAACTGGGCTTAAACATCTTAGA
* * * *
31897161 TGCCAGCTA-AATTAGGCTTAAACATCTTTG-
1 TGCCA-ATATAACTGGGCTTAAACATCTTAGA
*
31897191 TGCCAATATAACTGGGCTTAAACATCTTGGA
1 TGCCAATATAACTGGGCTTAAACATCTTAGA
* * *
31897222 TGCCAGCT-TAATTGGGCTTAAAC-TCTTTTTG-
1 TGCCA-ATATAACTGGGCTTAAACATC--TTAGA
** * *
31897253 TGCCAACGTAACTGGACTTAAACATCTTGGA
1 TGCCAATATAACTGGGCTTAAACATCTTAGA
* * * *
31897284 TGCCAGGTA-AATTGGACTTAAATC-TCTTTG-
1 TGCCA-ATATAACTGGGCTTAAA-CATCTTAGA
* ** *
31897314 TGCCAACATAGTTAGGCTTAAACATCTTAGA
1 TGCCAATATAACTGGGCTTAAACATCTTAGA
* * * * * *
31897345 TGCTAGCTA-AATTAGGCTTAATCATCTT-TA
1 TGCCA-ATATAACTGGGCTTAAACATCTTAGA
*
31897375 TGCCAATATAACTGGGCTTAAACATCTTGGA
1 TGCCAATATAACTGGGCTTAAACATCTTAGA
* * *
31897406 TGCCAGT-TAAATTGGGCTTAAAC-TCCTTCG-
1 TGCCAATAT-AACTGGGCTTAAACAT-CTTAGA
* * * *
31897436 TGCCAACATAACTGGACTTAAACATCCTGGA
1 TGCCAATATAACTGGGCTTAAACATCTTAGA
* * *
31897467 TGCCAGT-TAAATTGGGCTTAAACATCTTTG-
1 TGCCAATAT-AACTGGGCTTAAACATCTTAGA
*
31897497 TGCCAATATAACTGGGCTTAAACATCTTGGA
1 TGCCAATATAACTGGGCTTAAACATCTTAGA
* * **
31897528 TGCCAGCT-TAATTGGGCTTAAAC-TCTTTTTA
1 TGCCA-ATATAACTGGGCTTAAACATC-TTAGA
** * *
31897559 TGCCAACGTAACTGGACTTAAACATCTTGGA
1 TGCCAATATAACTGGGCTTAAACATCTTAGA
* * * *
31897590 TGCCAGGTA-AATTGGACTTAAATC-TCTTTG-
1 TGCCA-ATATAACTGGGCTTAAA-CATCTTAGA
* ** *
31897620 TGCCAACATAGTTAGGCTTAAACATCTTAGA
1 TGCCAATATAACTGGGCTTAAACATCTTAGA
* * * * * *
31897651 TGCTAGCTA-AATTAGGCTTAATCATCTT-TA
1 TGCCA-ATATAACTGGGCTTAAACATCTTAGA
* *
31897681 TGTCAATATAACTGGGCTTAAACATCTTGGA
1 TGCCAATATAACTGGGCTTAAACATCTTAGA
* *
31897712 TGCCAAT-TAAATTGGGCTTAAAC-TCCTTCG-
1 TGCCAATAT-AACTGGGCTTAAACAT-CTTAGA
* * *
31897742 TGCCAACATAACTGGACTTAAACATCTTGGA
1 TGCCAATATAACTGGGCTTAAACATCTTAGA
* *
31897773 TGCCAAT-TAAATTGGGCTTAAACATCTTTG-
1 TGCCAATAT-AACTGGGCTTAAACATCTTAGA
* * * *
31897803 TGCCAATGTAGCTAGGCTTAAACATCTTGGA
1 TGCCAATATAACTGGGCTTAAACATCTTAGA
* * * *
31897834 TGCTAGCTA-AATTGGGCTTAAATC-TCTTTG-
1 TGCCA-ATATAACTGGGCTTAAA-CATCTTAGA
* * * *
31897864 TGCCAACATAGCTAGGCTTAAACATCTTGGA
1 TGCCAATATAACTGGGCTTAAACATCTTAGA
** * * * * *
31897895 TGTTAGCTA-AATTGGGCTTAATCGTCTT-TA
1 TGCCA-ATATAACTGGGCTTAAACATCTTAGA
* *
31897925 TGCCATTATAACTGGG-TGTAAACATCTTGGA
1 TGCCAATATAACTGGGCT-TAAACATCTTAGA
* *
31897956 TGCCAACTA-AATTGAGCTTAAAC-TCCCTT-G-
1 TGCCAA-TATAACTGGGCTTAAACAT--CTTAGA
* * * *
31897986 TGCCAATGTAACTGGACTTATACATCTTGGA
1 TGCCAATATAACTGGGCTTAAACATCTTAGA
31898017 TGCCA
1 TGCCA
31898022 GTTAAATTGG
Statistics
Matches: 1432, Mismatches: 391, Indels: 282
0.68 0.19 0.13
Matches are distributed among these distances:
29 50 0.03
30 533 0.37
31 786 0.55
32 63 0.04
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (31 bp):
TGCCAATATAACTGGGCTTAAACATCTTAGA
Found at i:31896106 original size:30 final size:30
Alignment explanation
Indices: 31896026--31896114 Score: 90
Period size: 30 Copynumber: 2.9 Consensus size: 30
31896016 AAATTCTCTT
* * *
31896026 GTGCCAAGATAACTAGGCTTAAACATCTTA
1 GTGCCAATATAACTGGGCTTAAACATCTCA
* * * *
31896056 GATGCTAGT-TAAATTGGGCTTGAACATCTCA
1 G-TGCCAATAT-AACTGGGCTTAAACATCTCA
31896087 GTGCCAATATAACTGGGCTTAAACATCT
1 GTGCCAATATAACTGGGCTTAAACATCT
31896115 TGGATGTCAA
Statistics
Matches: 45, Mismatches: 11, Indels: 6
0.73 0.18 0.10
Matches are distributed among these distances:
30 23 0.51
31 22 0.49
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (30 bp):
GTGCCAATATAACTGGGCTTAAACATCTCA
Found at i:31896130 original size:61 final size:62
Alignment explanation
Indices: 31896024--31898037 Score: 2019
Period size: 61 Copynumber: 32.9 Consensus size: 62
31896014 TTAAATTCTC
* * * * * *
31896024 TTGTGCCAAGATAACTAGGCTTAAACATCTTAGATGCTAGTTAAATTGGGCTTGAACATC-T
1 TTGTGCCAACATAACTGGGCTTAAACATCTTGGATGCCAGCTAAATTGGGCTTAAACATCTT
** * * *
31896085 CAGTGCCAATATAACTGGGCTTAAACATCTTGGATGTCAACTAAATTGGG-TTGAAAC-TCTTT
1 TTGTGCCAACATAACTGGGCTTAAACATCTTGGATGCCAGCTAAATTGGGCTT-AAACATC-TT
* * ** * * *
31896147 TTATGCCAACGTAACTGAACTTATACATCTTGGATGCCAGCTAAATTGAGCTGAAAC-TCTTT
1 TTGTGCCAACATAACTGGGCTTAAACATCTTGGATGCCAGCTAAATTGGGCTTAAACATC-TT
* * * * * *
31896209 TTGTGCCAACGTAATTGGACTTATACATATTGGATGCCAGCTAAATTAGGCTTAAACATC-T
1 TTGTGCCAACATAACTGGGCTTAAACATCTTGGATGCCAGCTAAATTGGGCTTAAACATCTT
* * *
31896270 TTGTGCCAATATAACTAGGCTTAAACATCTTGGATGCCAGCTTAATTGGGCTTAAAC-TCTTT
1 TTGTGCCAACATAACTGGGCTTAAACATCTTGGATGCCAGCTAAATTGGGCTTAAACATC-TT
* * *
31896332 TTGTGCCAACGTAACTGGACTTAAACATCTTGGATGCCAAG-TAAATTGGGCTAAAACATC-T
1 TTGTGCCAACATAACTGGGCTTAAACATCTTGGATGCC-AGCTAAATTGGGCTTAAACATCTT
* * * * *
31896393 TTGTGCCAATATAACTCGGCTTAAACATCTTGGATGCCAGCTTAATTAGGCTTAAAC-TTTT
1 TTGTGCCAACATAACTGGGCTTAAACATCTTGGATGCCAGCTAAATTGGGCTTAAACATCTT
* * *
31896454 TTGTGCCAACATAACTAGACTTAAACATCTTGGATGCCATG-TAAATTGGACTT--A-ATCTT
1 TTGTGCCAACATAACTGGGCTTAAACATCTTGGATGCCA-GCTAAATTGGGCTTAAACATCTT
** * * * * * *
31896513 TTGGTGCCAACATAGTTAGGCTTGAACATCTTAGATGCTAGCTAAATTGGGCTTAATCGTC-T
1 TT-GTGCCAACATAACTGGGCTTAAACATCTTGGATGCCAGCTAAATTGGGCTTAAACATCTT
* * * * *
31896575 TTATGCCAATATAACTGGGCGTAAACATCTTGGATGCCAGCTTAATTAGGCTTAAAC-TCTTT
1 TTGTGCCAACATAACTGGGCTTAAACATCTTGGATGCCAGCTAAATTGGGCTTAAACATC-TT
* * * * *
31896637 TTGTACCAACGTAACTGGACTTAAACATCTTGGATGCCAGGTAAATTGGACTT-AA-ATCTCT
1 TTGTGCCAACATAACTGGGCTTAAACATCTTGGATGCCAGCTAAATTGGGCTTAAACATCT-T
* * * * * * * *
31896698 TTGTGCCAATATAGCTAGGCTTAAACATCTTAGATGCTAGCTAAATTTGGCTTAATCGTC-T
1 TTGTGCCAACATAACTGGGCTTAAACATCTTGGATGCCAGCTAAATTGGGCTTAAACATCTT
* * * * * *
31896759 TTATGCCAATATAATTGGGCTTAAACATCTTGGATGCCAGTTACATTGGGCTTAAAC-TCCT
1 TTGTGCCAACATAACTGGGCTTAAACATCTTGGATGCCAGCTAAATTGGGCTTAAACATCTT
* * * *
31896820 TCGTGCCAACATAACTGGACTTAAACATCCTGGATGCCAGTTAAATTGGGCTTAAACATC-T
1 TTGTGCCAACATAACTGGGCTTAAACATCTTGGATGCCAGCTAAATTGGGCTTAAACATCTT
* * * * *
31896881 TTGTGCCAACGTAGCTAGGCTTAAACATCTTAGATGCTAGCTAAATTGGGCTT-AA-ATCTCT
1 TTGTGCCAACATAACTGGGCTTAAACATCTTGGATGCCAGCTAAATTGGGCTTAAACATCT-T
* ** * * ***
31896942 TTGTGCCAACATAGCTATGCTTAAACATCTTGGATGCTAGCTAAATTAGGCTTAATTGTC-T
1 TTGTGCCAACATAACTGGGCTTAAACATCTTGGATGCCAGCTAAATTGGGCTTAAACATCTT
* * * * *
31897003 TTATGCCAATATAACTAGGCTTAAACATCTTGGATGCTAGCTAAATTGGGCTGAAAC-TCTTT
1 TTGTGCCAACATAACTGGGCTTAAACATCTTGGATGCCAGCTAAATTGGGCTTAAACATC-TT
* * * * * * *
31897065 TTATGCCAACGTAACTAGACTTATACATCTTGGATGCAAGCTAAATTGGGCTGAAAC-TCTTT
1 TTGTGCCAACATAACTGGGCTTAAACATCTTGGATGCCAGCTAAATTGGGCTTAAACATC-TT
* * * * *
31897127 TTGTGCCAACGTAACTAGACTTATACATCTTGGATGCCAGCTAAATTAGGCTTAAACATC-T
1 TTGTGCCAACATAACTGGGCTTAAACATCTTGGATGCCAGCTAAATTGGGCTTAAACATCTT
* *
31897188 TTGTGCCAATATAACTGGGCTTAAACATCTTGGATGCCAGCTTAATTGGGCTTAAAC-TCTTT
1 TTGTGCCAACATAACTGGGCTTAAACATCTTGGATGCCAGCTAAATTGGGCTTAAACATC-TT
* * * *
31897250 TTGTGCCAACGTAACTGGACTTAAACATCTTGGATGCCAGGTAAATTGGACTT-AA-ATCTCT
1 TTGTGCCAACATAACTGGGCTTAAACATCTTGGATGCCAGCTAAATTGGGCTTAAACATCT-T
** * * * * *
31897311 TTGTGCCAACATAGTTAGGCTTAAACATCTTAGATGCTAGCTAAATTAGGCTTAATCATC-T
1 TTGTGCCAACATAACTGGGCTTAAACATCTTGGATGCCAGCTAAATTGGGCTTAAACATCTT
* * * *
31897372 TTATGCCAATATAACTGGGCTTAAACATCTTGGATGCCAGTTAAATTGGGCTTAAAC-TCCT
1 TTGTGCCAACATAACTGGGCTTAAACATCTTGGATGCCAGCTAAATTGGGCTTAAACATCTT
* * * *
31897433 TCGTGCCAACATAACTGGACTTAAACATCCTGGATGCCAGTTAAATTGGGCTTAAACATC-T
1 TTGTGCCAACATAACTGGGCTTAAACATCTTGGATGCCAGCTAAATTGGGCTTAAACATCTT
* *
31897494 TTGTGCCAATATAACTGGGCTTAAACATCTTGGATGCCAGCTTAATTGGGCTTAAAC-TCTTT
1 TTGTGCCAACATAACTGGGCTTAAACATCTTGGATGCCAGCTAAATTGGGCTTAAACATC-TT
* * * * *
31897556 TTATGCCAACGTAACTGGACTTAAACATCTTGGATGCCAGGTAAATTGGACTT-AA-ATCTCT
1 TTGTGCCAACATAACTGGGCTTAAACATCTTGGATGCCAGCTAAATTGGGCTTAAACATCT-T
** * * * * *
31897617 TTGTGCCAACATAGTTAGGCTTAAACATCTTAGATGCTAGCTAAATTAGGCTTAATCATCTT
1 TTGTGCCAACATAACTGGGCTTAAACATCTTGGATGCCAGCTAAATTGGGCTTAAACATCTT
* ** *
31897679 TATGT--CAATATAACTGGGCTTAAACATCTTGGATGCCAATTAAATTGGGCTTAAAC-TCCT
1 T-TGTGCCAACATAACTGGGCTTAAACATCTTGGATGCCAGCTAAATTGGGCTTAAACATCTT
* * **
31897739 TCGTGCCAACATAACTGGACTTAAACATCTTGGATGCCAATTAAATTGGGCTTAAACATC-T
1 TTGTGCCAACATAACTGGGCTTAAACATCTTGGATGCCAGCTAAATTGGGCTTAAACATCTT
** * * *
31897800 TTGTGCCAATGTAGCTAGGCTTAAACATCTTGGATGCTAGCTAAATTGGGCTT-AA-ATCTCT
1 TTGTGCCAACATAACTGGGCTTAAACATCTTGGATGCCAGCTAAATTGGGCTTAAACATCT-T
* * ** * *
31897861 TTGTGCCAACATAGCTAGGCTTAAACATCTTGGATGTTAGCTAAATTGGGCTTAATCGTC-T
1 TTGTGCCAACATAACTGGGCTTAAACATCTTGGATGCCAGCTAAATTGGGCTTAAACATCTT
* ** * * **
31897922 TTATGCCATTATAACTGGG-TGTAAACATCTTGGATGCCAACTAAATTGAGCTTAAAC-TCCC
1 TTGTGCCAACATAACTGGGCT-TAAACATCTTGGATGCCAGCTAAATTGGGCTTAAACATCTT
** * * *
31897983 TTGTGCCAATGTAACTGGACTTATACATCTTGGATGCCAGTTAAATTGGGCTTAA
1 TTGTGCCAACATAACTGGGCTTAAACATCTTGGATGCCAGCTAAATTGGGCTTAA
31898038 GACTCAAATC
Statistics
Matches: 1632, Mismatches: 263, Indels: 116
0.81 0.13 0.06
Matches are distributed among these distances:
59 15 0.01
60 77 0.05
61 1097 0.67
62 416 0.25
63 27 0.02
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (62 bp):
TTGTGCCAACATAACTGGGCTTAAACATCTTGGATGCCAGCTAAATTGGGCTTAAACATCTT
Found at i:31905293 original size:40 final size:41
Alignment explanation
Indices: 31905232--31905330 Score: 130
Period size: 40 Copynumber: 2.4 Consensus size: 41
31905222 GTGATAATTA
31905232 TGACCCAGCCATGTGTGGTGTAAGAGTG-CATGAGCTATGC
1 TGACCCAGCCATGTGTGGTGTAAGAGTGACATGAGCTATGC
* * *
31905272 TGACCCAGCCATGTGCT-GTGTATGAGTGCACATGAGTTGTGC
1 TGACCCAGCCATGTG-TGGTGTAAGAGTG-ACATGAGCTATGC
*
31905314 TGACCCAGCTATGTGTG
1 TGACCCAGCCATGTGTG
31905331 ATGTGGTAGT
Statistics
Matches: 51, Mismatches: 4, Indels: 6
0.84 0.07 0.10
Matches are distributed among these distances:
40 25 0.49
41 2 0.04
42 24 0.47
ACGTcount: A:0.20, C:0.21, G:0.31, T:0.27
Consensus pattern (41 bp):
TGACCCAGCCATGTGTGGTGTAAGAGTGACATGAGCTATGC
Found at i:31905388 original size:2 final size:2
Alignment explanation
Indices: 31905381--31905431 Score: 75
Period size: 2 Copynumber: 25.0 Consensus size: 2
31905371 GGCCGGTGGT
* *
31905381 TA TA TA TA TG TT TA TA TA TGA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA
31905424 TA TA TA TA
1 TA TA TA TA
31905432 GAGAGAGAGA
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
2 43 0.96
3 2 0.04
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (2 bp):
TA
Found at i:31908499 original size:19 final size:19
Alignment explanation
Indices: 31908475--31908512 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
31908465 CCATTTAACT
31908475 TATTGGAGTATAACTTGAG
1 TATTGGAGTATAACTTGAG
*
31908494 TATTGGAGTATAATTTGAG
1 TATTGGAGTATAACTTGAG
31908513 GGGTTGGTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.03, G:0.26, T:0.39
Consensus pattern (19 bp):
TATTGGAGTATAACTTGAG
Found at i:31909907 original size:13 final size:13
Alignment explanation
Indices: 31909889--31909913 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
31909879 AGAGAAATTG
31909889 TGATTTTATAAAA
1 TGATTTTATAAAA
31909902 TGATTTTATAAA
1 TGATTTTATAAA
31909914 TTTTCTGGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TGATTTTATAAAA
Found at i:31919198 original size:13 final size:13
Alignment explanation
Indices: 31919180--31919204 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
31919170 AGAGAAATTG
31919180 TGATTTTATAAAA
1 TGATTTTATAAAA
31919193 TGATTTTATAAA
1 TGATTTTATAAA
31919205 TTTTTTGGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TGATTTTATAAAA
Found at i:31921352 original size:15 final size:16
Alignment explanation
Indices: 31921332--31921374 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
31921322 AACATAAATT
*
31921332 AAAATAACTCACT-TA
1 AAAATAACTAACTATA
*
31921347 AAAATAAACTAATTATA
1 AAAAT-AACTAACTATA
31921364 AAAATAACTAA
1 AAAATAACTAA
31921375 AAATAACTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 5 0.21
16 12 0.50
17 7 0.29
ACGTcount: A:0.63, C:0.12, G:0.00, T:0.26
Consensus pattern (16 bp):
AAAATAACTAACTATA
Found at i:31923733 original size:19 final size:19
Alignment explanation
Indices: 31923699--31923739 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
31923689 ATTGAAGCAG
31923699 AGAAGAATTTGAAAGATTCA
1 AGAAGAATTTGAAAGA-TCA
*
31923719 AGAAG-ATTTGGAAGATCA
1 AGAAGAATTTGAAAGATCA
31923737 AGA
1 AGA
31923740 TTATAATTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 6 0.30
19 9 0.45
20 5 0.25
ACGTcount: A:0.49, C:0.05, G:0.24, T:0.22
Consensus pattern (19 bp):
AGAAGAATTTGAAAGATCA
Found at i:31927328 original size:47 final size:43
Alignment explanation
Indices: 31927277--31927393 Score: 110
Period size: 45 Copynumber: 2.5 Consensus size: 43
31927267 CGTTTTTGTA
*
31927277 ACTAAATTTCTTTTTTATTTTTCTTACTT-ATCTAGCCTATTTTTATG
1 ACTAAATAT-TTTTTTATTTTTCTTA-TTAATCTA--CT-TTTTTATG
* *
31927324 ACTAAATATATTTTAATTTTTTCTTTATTAATCTACTTTTTTATG
1 ACTAAATATTTTTTTA-TTTTTC-TTATTAATCTACTTTTTTATG
*
31927369 ACTAAATATATATTTTATTTATTCT
1 ACTAAATAT-TTTTTTATTT-TTCT
31927394 ACATTTTCTT
Statistics
Matches: 59, Mismatches: 6, Indels: 12
0.77 0.08 0.16
Matches are distributed among these distances:
45 21 0.36
46 14 0.24
47 16 0.27
48 8 0.14
ACGTcount: A:0.27, C:0.11, G:0.03, T:0.59
Consensus pattern (43 bp):
ACTAAATATTTTTTTATTTTTCTTATTAATCTACTTTTTTATG
Found at i:31936871 original size:19 final size:19
Alignment explanation
Indices: 31936847--31936913 Score: 52
Period size: 19 Copynumber: 3.7 Consensus size: 19
31936837 TTTATTAAAA
31936847 AATATTTTTTAATTTTAAT
1 AATATTTTTTAATTTTAAT
*** *
31936866 AATATTGAATAATTTAAAT
1 AATATTTTTTAATTTTAAT
* *
31936885 ATTAATTTTTAA--TTAA-
1 AATATTTTTTAATTTTAAT
31936901 AATA-TTTTTAATT
1 AATATTTTTTAATT
31936914 ATAAATATTA
Statistics
Matches: 35, Mismatches: 11, Indels: 6
0.67 0.21 0.12
Matches are distributed among these distances:
15 7 0.20
16 3 0.09
17 3 0.09
19 22 0.63
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.55
Consensus pattern (19 bp):
AATATTTTTTAATTTTAAT
Found at i:31936909 original size:15 final size:16
Alignment explanation
Indices: 31936889--31936922 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
31936879 TTAAATATTA
31936889 ATTTTTAATTA-AAAT
1 ATTTTTAATTATAAAT
31936904 ATTTTTAATTATAAAT
1 ATTTTTAATTATAAAT
31936920 ATT
1 ATT
31936923 AATATTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 11 0.61
16 7 0.39
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
ATTTTTAATTATAAAT
Found at i:31936932 original size:38 final size:39
Alignment explanation
Indices: 31936847--31936935 Score: 98
Period size: 38 Copynumber: 2.3 Consensus size: 39
31936837 TTTATTAAAA
31936847 AATATTTTTTAATTTTAATAATATTGAATAATTTAAATATT
1 AATATTTTTTAA--TTAATAATATTGAATAATTTAAATATT
**
31936888 -A-A-TTTTTAATTAA-AATATT-TTTAATTATAAATATT
1 AATATTTTTTAATTAATAATATTGAATAATT-TAAATATT
31936923 AATATTTTTTAAT
1 AATATTTTTTAAT
31936936 ATTTTTAAAT
Statistics
Matches: 42, Mismatches: 2, Indels: 11
0.76 0.04 0.20
Matches are distributed among these distances:
34 5 0.12
35 14 0.33
36 5 0.12
37 1 0.02
38 15 0.36
39 1 0.02
40 1 0.02
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.55
Consensus pattern (39 bp):
AATATTTTTTAATTAATAATATTGAATAATTTAAATATT
Found at i:31936958 original size:33 final size:34
Alignment explanation
Indices: 31936875--31936960 Score: 101
Period size: 33 Copynumber: 2.6 Consensus size: 34
31936865 TAATATTGAA
31936875 TAATTT-AAATATTAAT-TTTTAATTAAAATATTTT
1 TAATTTAAAATATTAATATTTT-ATT-AAATATTTT
31936909 TAA-TTATAAATATTAATATTTT-TT-AATATTTT
1 TAATTTA-AAATATTAATATTTTATTAAATATTTT
31936941 TAAATTTAAAATATTAATAT
1 T-AATTTAAAATATTAATAT
31936961 AATCAAACCC
Statistics
Matches: 47, Mismatches: 0, Indels: 11
0.81 0.00 0.19
Matches are distributed among these distances:
32 9 0.19
33 16 0.34
34 8 0.17
35 10 0.21
36 4 0.09
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (34 bp):
TAATTTAAAATATTAATATTTTATTAAATATTTT
Found at i:31947855 original size:34 final size:34
Alignment explanation
Indices: 31947812--31947879 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
31947802 GAGAATTATG
31947812 AAATCCACTATGCCATTAGTGACTTGAATATCTA
1 AAATCCACTATGCCATTAGTGACTTGAATATCTA
31947846 AAATCCACTATGCCATTAGTGACTTGAATATCTA
1 AAATCCACTATGCCATTAGTGACTTGAATATCTA
31947880 GAAAACTTAC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.35, C:0.21, G:0.12, T:0.32
Consensus pattern (34 bp):
AAATCCACTATGCCATTAGTGACTTGAATATCTA
Found at i:31948090 original size:34 final size:35
Alignment explanation
Indices: 31948016--31948114 Score: 101
Period size: 34 Copynumber: 2.9 Consensus size: 35
31948006 CTATTTTATG
* * * *
31948016 CAAAACAACAAAAACAAGTGAAGTGCTACTTCACG
1 CAAAACAACTAGAACAAGTGAAGCGCTACTTCACA
* * *
31948051 TAAAACAACTAGAACGAGTGAAGCGC-AGTTCACA
1 CAAAACAACTAGAACAAGTGAAGCGCTACTTCACA
* * *
31948085 CAAAACAACTAGAATAAGTGGAGCACTACT
1 CAAAACAACTAGAACAAGTGAAGCGCTACT
31948115 CCATATGCAA
Statistics
Matches: 50, Mismatches: 13, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
34 27 0.54
35 23 0.46
ACGTcount: A:0.46, C:0.21, G:0.17, T:0.15
Consensus pattern (35 bp):
CAAAACAACTAGAACAAGTGAAGCGCTACTTCACA
Found at i:31948396 original size:29 final size:29
Alignment explanation
Indices: 31948348--31948414 Score: 91
Period size: 29 Copynumber: 2.3 Consensus size: 29
31948338 TTCTCGTATG
* *
31948348 CCTATTCACATGCACTTTCTTCTCTTGTA
1 CCTATTCACATACACTTTCTTCTATTGTA
31948377 CCTATTCACATACAGC-TTCTTCTATTGTA
1 CCTATTCACATACA-CTTTCTTCTATTGTA
*
31948406 CCTTTTCAC
1 CCTATTCAC
31948415 GTATACATCT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
29 33 0.97
30 1 0.03
ACGTcount: A:0.19, C:0.31, G:0.06, T:0.43
Consensus pattern (29 bp):
CCTATTCACATACACTTTCTTCTATTGTA
Found at i:31953778 original size:2 final size:2
Alignment explanation
Indices: 31953771--31953847 Score: 97
Period size: 2 Copynumber: 39.5 Consensus size: 2
31953761 CCCTTCATTT
* * *
31953771 TC TC TC TC TC TC TC TN TT TC -C T- TAC TT TC T- TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC T-C TC TC TC TC TC TC TC TC
31953811 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
31953848 TTGCATTCCT
Statistics
Matches: 66, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
1 3 0.05
2 62 0.94
3 1 0.02
ACGTcount: A:0.01, C:0.44, G:0.00, T:0.53
Consensus pattern (2 bp):
TC
Found at i:31953867 original size:3 final size:3
Alignment explanation
Indices: 31953859--31953887 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
31953849 TGCATTCCTT
31953859 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
31953888 TTCAAAGGAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:31955007 original size:3 final size:3
Alignment explanation
Indices: 31954999--31955025 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
31954989 AACAAGATCA
31954999 ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
31955026 TGGTTCGAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:31955667 original size:3 final size:3
Alignment explanation
Indices: 31955659--31955695 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
31955649 CCCAAATGTT
*
31955659 TTC TTC TTC TTC TTC TTC TTC TTA TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
31955696 ATTATTATTA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.03, C:0.30, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:31955701 original size:3 final size:3
Alignment explanation
Indices: 31955695--31955727 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
31955685 CTTCTTCTTC
31955695 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
31955728 CACCATTTGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:31956289 original size:18 final size:18
Alignment explanation
Indices: 31956266--31956305 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
31956256 ACACGTTTAC
31956266 TTAATCGTGTTATCGTGT
1 TTAATCGTGTTATCGTGT
31956284 TTAATCGTGTTATCGTGT
1 TTAATCGTGTTATCGTGT
31956302 TTAA
1 TTAA
31956306 ATGTATATAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.20, C:0.10, G:0.20, T:0.50
Consensus pattern (18 bp):
TTAATCGTGTTATCGTGT
Found at i:31956292 original size:10 final size:9
Alignment explanation
Indices: 31956266--31956302 Score: 51
Period size: 8 Copynumber: 4.2 Consensus size: 9
31956256 ACACGTTTAC
31956266 TTAATCGTG
1 TTAATCGTG
31956275 TT-ATCGTG
1 TTAATCGTG
31956283 TTTAATCGTG
1 -TTAATCGTG
31956293 TT-ATCGTG
1 TTAATCGTG
31956301 TT
1 TT
31956303 TAAATGTATA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
8 14 0.54
9 6 0.23
10 6 0.23
ACGTcount: A:0.16, C:0.11, G:0.22, T:0.51
Consensus pattern (9 bp):
TTAATCGTG
Found at i:31956670 original size:39 final size:41
Alignment explanation
Indices: 31956592--31956670 Score: 108
Period size: 42 Copynumber: 2.0 Consensus size: 41
31956582 AAACGTGTTA
*
31956592 TTAATCGTGTCGTGTTGTATATTGACACGTTTAATAAACGAG
1 TTAATCGTGTCGTGTCG-ATATTGACACGTTTAATAAACGAG
* *
31956634 TTAATCGTGTCGTGTCG-TGTT-ACACGTTTATTAAACG
1 TTAATCGTGTCGTGTCGATATTGACACGTTTAATAAACG
31956671 TATACGTATA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
39 15 0.44
40 3 0.09
42 16 0.47
ACGTcount: A:0.25, C:0.14, G:0.22, T:0.39
Consensus pattern (41 bp):
TTAATCGTGTCGTGTCGATATTGACACGTTTAATAAACGAG
Found at i:31956844 original size:14 final size:14
Alignment explanation
Indices: 31956825--31956862 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
31956815 CAAATAGAAT
31956825 TTAAAAAAAAACTC
1 TTAAAAAAAAACTC
* *
31956839 TTAAAAAACAACTT
1 TTAAAAAAAAACTC
31956853 TTAAAAAAAA
1 TTAAAAAAAA
31956863 CAAAATTTCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.66, C:0.11, G:0.00, T:0.24
Consensus pattern (14 bp):
TTAAAAAAAAACTC
Found at i:31960678 original size:42 final size:43
Alignment explanation
Indices: 31960591--31960681 Score: 166
Period size: 43 Copynumber: 2.1 Consensus size: 43
31960581 ACCATCCCAC
*
31960591 CATCATCAGCTCATGTGCACTCCCTACTCGCACATAGCTAGGT
1 CATCATCAGCTCATGTGCACTCCCTACACGCACATAGCTAGGT
31960634 CATCATCAGCTCATGTGCACTCCC-ACACGCACATAGCTAGGT
1 CATCATCAGCTCATGTGCACTCCCTACACGCACATAGCTAGGT
31960676 CATCAT
1 CATCAT
31960682 TATCACAGAA
Statistics
Matches: 47, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
42 23 0.49
43 24 0.51
ACGTcount: A:0.25, C:0.35, G:0.15, T:0.24
Consensus pattern (43 bp):
CATCATCAGCTCATGTGCACTCCCTACACGCACATAGCTAGGT
Found at i:31966494 original size:2 final size:2
Alignment explanation
Indices: 31966487--31966517 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
31966477 GCTCAATTAT
31966487 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
31966518 GTATGTATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:31969137 original size:2 final size:2
Alignment explanation
Indices: 31969130--31969158 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
31969120 TCATTTAATA
31969130 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
31969159 NTATGAAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:31969345 original size:243 final size:242
Alignment explanation
Indices: 31968917--31969401 Score: 945
Period size: 243 Copynumber: 2.0 Consensus size: 242
31968907 TACAACTTAT
31968917 TATGAAATAAAATCTAATTATCTTTTAAAACATAAGCAACTAATTAAAAAATATTGATATATAAG
1 TATGAAATAAAATCTAATTATCTTTTAAAACATAAGCAACTAATTAAAAAATATTGATATATAAG
31968982 CAAATTCATATTATGTCAACTCAATTTCTTTTTTATATTTGTTTGGTACAAATGAAAATGTAATA
66 CAAATTCATATTATGTCAACTCAATTTCTTTTTTATATTTGTTTGGTACAAATGAAAATGTAATA
31969047 ATATCTTTATTTAAATTCAGCTGTCACCCTAGCCTCCTAAACAATCCAAGTGAACAATGTGATCA
131 ATATCTTTATTTAAATTCAGCTGTCACCCTAGCCTCCTAAACAATCCAAGTGAACAATGTGATCA
31969112 TTTCTATCTC-ATTTAATAATATATATATATATATATATATATATATA
196 TTTCTATCTCTA-TTAATAATATATATATATATATATATATATATATA
31969159 NTATGAAATAAAATCTAATTATCTTTTAAAACATAAGCAACTAATTAAAAAATATTGATATATAA
1 -TATGAAATAAAATCTAATTATCTTTTAAAACATAAGCAACTAATTAAAAAATATTGATATATAA
31969224 GCAAATTCATATTATGTCAACTCAATTTCTTTTTTATATTTGTTTGGTACAAATGAAAATGTAAT
65 GCAAATTCATATTATGTCAACTCAATTTCTTTTTTATATTTGTTTGGTACAAATGAAAATGTAAT
31969289 AATATCTTTATTTAAATTCAGCTGTCACCCTAGCCTCCTAAACAATCCAAGTGAACAATGTGATC
130 AATATCTTTATTTAAATTCAGCTGTCACCCTAGCCTCCTAAACAATCCAAGTGAACAATGTGATC
31969354 ATTTCTATCTCTATTAATAATATATATATATATATATATATATATATA
195 ATTTCTATCTCTATTAATAATATATATATATATATATATATATATATA
31969402 CTTAATTGCT
Statistics
Matches: 241, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
243 240 1.00
244 1 0.00
ACGTcount: A:0.41, C:0.13, G:0.07, T:0.39
Consensus pattern (242 bp):
TATGAAATAAAATCTAATTATCTTTTAAAACATAAGCAACTAATTAAAAAATATTGATATATAAG
CAAATTCATATTATGTCAACTCAATTTCTTTTTTATATTTGTTTGGTACAAATGAAAATGTAATA
ATATCTTTATTTAAATTCAGCTGTCACCCTAGCCTCCTAAACAATCCAAGTGAACAATGTGATCA
TTTCTATCTCTATTAATAATATATATATATATATATATATATATATA
Found at i:31969380 original size:2 final size:2
Alignment explanation
Indices: 31969373--31969401 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
31969363 TCTATTAATA
31969373 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
31969402 CTTAATTGCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:31974278 original size:20 final size:20
Alignment explanation
Indices: 31974253--31974294 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
31974243 TTGCACTGCT
31974253 TTAAATTTCATTATATTCTA
1 TTAAATTTCATTATATTCTA
*
31974273 TTAAATTTCATTTTATTCTA
1 TTAAATTTCATTATATTCTA
31974293 TT
1 TT
31974295 CCCATTGCTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.31, C:0.10, G:0.00, T:0.60
Consensus pattern (20 bp):
TTAAATTTCATTATATTCTA
Found at i:31984690 original size:15 final size:15
Alignment explanation
Indices: 31984670--31984712 Score: 54
Period size: 13 Copynumber: 3.0 Consensus size: 15
31984660 TTTTTGTAAA
31984670 TTATAATATTAAAAT
1 TTATAATATTAAAAT
*
31984685 TTATAA-ATT-TAAT
1 TTATAATATTAAAAT
*
31984698 TTATAATAATAAAAT
1 TTATAATATTAAAAT
31984713 ATGAAATAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
13 9 0.39
14 5 0.22
15 9 0.39
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
TTATAATATTAAAAT
Found at i:31989151 original size:65 final size:63
Alignment explanation
Indices: 31989049--31989173 Score: 196
Period size: 65 Copynumber: 2.0 Consensus size: 63
31989039 CTATCACTTA
* * *
31989049 TTTCAGGCCACGTTTGAGAAATTTTGGCAACTTAAAAGGAGTCTAAATTTGTGCAATTAGCTG
1 TTTCAGGCCACGTTTGACAAATTTTGACAACTTAAAAGGAGTCTAAATTTATGCAATTAGCTG
*
31989112 TTTCAGGCCATGATTTTGACAAATTTTGACAACTTAAAAGGAGTCTAAATTTATGCAATTAG
1 TTTCAGGCCACG--TTTGACAAATTTTGACAACTTAAAAGGAGTCTAAATTTATGCAATTAG
31989174 TTGCACTTAT
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
63 11 0.20
65 45 0.80
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.34
Consensus pattern (63 bp):
TTTCAGGCCACGTTTGACAAATTTTGACAACTTAAAAGGAGTCTAAATTTATGCAATTAGCTG
Found at i:31998406 original size:49 final size:49
Alignment explanation
Indices: 31998330--31998433 Score: 165
Period size: 49 Copynumber: 2.1 Consensus size: 49
31998320 ATCTGTTGAT
* * *
31998330 ATTATTGCTCTTTATCTATGTTTTTCTGTGTTTTGGACATTGCAACCTG
1 ATTATTGCTCGTTATCTACGTTTTTCTGTGTTTTAGACATTGCAACCTG
31998379 ATTATTGCT-GTTATCTACGTTTCTTCTGTGTTTTAGACATTGCAACCTG
1 ATTATTGCTCGTTATCTACGTTT-TTCTGTGTTTTAGACATTGCAACCTG
31998428 ATTATT
1 ATTATT
31998434 CTCAAATCCT
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
48 11 0.22
49 40 0.78
ACGTcount: A:0.18, C:0.16, G:0.15, T:0.50
Consensus pattern (49 bp):
ATTATTGCTCGTTATCTACGTTTTTCTGTGTTTTAGACATTGCAACCTG
Found at i:32018059 original size:20 final size:19
Alignment explanation
Indices: 32018018--32018062 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
32018008 CCATTTTTAC
* **
32018018 TTTTAATTTTTTTAATGTA
1 TTTTTATTTTTTTAATAAA
32018037 TTTTTATTTTTTATAATAAA
1 TTTTTATTTTTT-TAATAAA
32018057 TTTTTA
1 TTTTTA
32018063 AAAAATTTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 11 0.50
20 11 0.50
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (19 bp):
TTTTTATTTTTTTAATAAA
Found at i:32018670 original size:31 final size:30
Alignment explanation
Indices: 32018585--32018692 Score: 121
Period size: 31 Copynumber: 3.6 Consensus size: 30
32018575 AATTTAAATT
*
32018585 ATTAAATAAATTTTTATATTTTTA--TTACG
1 ATTAAATAAATTTTTATATTTTTATTTTA-A
* *
32018614 TTTAATTAAATTTTTATATTTTTATTTTAA
1 ATTAAATAAATTTTTATATTTTTATTTTAA
*
32018644 ATTAAATAAATTTATATATTTTTTATTTTAA
1 ATTAAATAAATTTTTATA-TTTTTATTTTAA
* **
32018675 GTTAAATAAGCTTTTATA
1 ATTAAATAAATTTTTATA
32018693 ACTAATAATT
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
29 22 0.33
30 15 0.23
31 29 0.44
ACGTcount: A:0.38, C:0.02, G:0.03, T:0.57
Consensus pattern (30 bp):
ATTAAATAAATTTTTATATTTTTATTTTAA
Found at i:32018796 original size:33 final size:33
Alignment explanation
Indices: 32018759--32018822 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
32018749 AATATGTTAA
* * * *
32018759 AATATCATAATTGATTATGATATGACATATTGG
1 AATATCAAAATAGATAATGACATGACATATTGG
*
32018792 AATATCAAAATAGATAATGACATGATATATT
1 AATATCAAAATAGATAATGACATGACATATT
32018823 AATTTGATAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.45, C:0.06, G:0.12, T:0.36
Consensus pattern (33 bp):
AATATCAAAATAGATAATGACATGACATATTGG
Found at i:32019990 original size:14 final size:14
Alignment explanation
Indices: 32019967--32019996 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
32019957 TATGAAAATT
32019967 TATTAATTAATCAA
1 TATTAATTAATCAA
*
32019981 TATTATTTAATCAA
1 TATTAATTAATCAA
32019995 TA
1 TA
32019997 ANTTTGACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.47
Consensus pattern (14 bp):
TATTAATTAATCAA
Found at i:32020728 original size:19 final size:18
Alignment explanation
Indices: 32020686--32020733 Score: 62
Period size: 19 Copynumber: 2.7 Consensus size: 18
32020676 TTCTTTAAGC
*
32020686 TTTTTTTAAAAAAAATTT
1 TTTTTTTAAAAAAAAATT
*
32020704 TGTTTTTTAAAAAAAAA-A
1 T-TTTTTTAAAAAAAAATT
32020722 TTTTTTTAAAAA
1 TTTTTTTAAAAA
32020734 TTTCTCAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 11 0.41
18 2 0.07
19 14 0.52
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (18 bp):
TTTTTTTAAAAAAAAATT
Found at i:32021411 original size:17 final size:16
Alignment explanation
Indices: 32021382--32021422 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
32021372 AGTTTAAGAA
32021382 TATT-ATTTAATTGAGG
1 TATTAATTTAATTGA-G
32021398 TTATTAATTT-ATTGAG
1 -TATTAATTTAATTGAG
32021414 TATTAATTT
1 TATTAATTT
32021423 TTCGAAATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 9 0.39
16 1 0.04
17 9 0.39
18 4 0.17
ACGTcount: A:0.32, C:0.00, G:0.12, T:0.56
Consensus pattern (16 bp):
TATTAATTTAATTGAG
Found at i:32023519 original size:18 final size:19
Alignment explanation
Indices: 32023483--32023525 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
32023473 TTTTTTTTTT
* *
32023483 TTTTTTCTTTTTGACTTTA
1 TTTTATCTTTTGGACTTTA
32023502 TTTTATCTTTTGGA-TTTA
1 TTTTATCTTTTGGACTTTA
*
32023520 ATTTAT
1 TTTTAT
32023526 TGTTTCTGAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 9 0.43
19 12 0.57
ACGTcount: A:0.16, C:0.07, G:0.07, T:0.70
Consensus pattern (19 bp):
TTTTATCTTTTGGACTTTA
Found at i:32025299 original size:21 final size:19
Alignment explanation
Indices: 32025262--32025299 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
32025252 GACTTAATTG
*
32025262 TTTTTTATTTTATTATATA
1 TTTTTTAATTTATTATATA
*
32025281 TTTTTTAATTTAGTATATA
1 TTTTTTAATTTATTATATA
32025300 ACAAAAACAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (19 bp):
TTTTTTAATTTATTATATA
Found at i:32031835 original size:30 final size:30
Alignment explanation
Indices: 32031795--32031851 Score: 89
Period size: 29 Copynumber: 1.9 Consensus size: 30
32031785 TAATATTTAG
32031795 AAAAATAAAATTATAAAATTTTTAAAAAATT
1 AAAAATAAAATTAT-AAATTTTTAAAAAATT
*
32031826 AAAAA-AAAATTATAAATTTTTGAAAA
1 AAAAATAAAATTATAAATTTTTAAAAA
32031852 TTTGAGAGAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
29 12 0.48
30 8 0.32
31 5 0.20
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (30 bp):
AAAAATAAAATTATAAATTTTTAAAAAATT
Found at i:32049897 original size:61 final size:61
Alignment explanation
Indices: 32049830--32049952 Score: 246
Period size: 61 Copynumber: 2.0 Consensus size: 61
32049820 AATTACAGCG
32049830 TCTTCTTCAGGTAAGGAGCTCTGCAAAAAAGTAACAAGTAAGTTACCATTAACCAAAAACT
1 TCTTCTTCAGGTAAGGAGCTCTGCAAAAAAGTAACAAGTAAGTTACCATTAACCAAAAACT
32049891 TCTTCTTCAGGTAAGGAGCTCTGCAAAAAAGTAACAAGTAAGTTACCATTAACCAAAAACT
1 TCTTCTTCAGGTAAGGAGCTCTGCAAAAAAGTAACAAGTAAGTTACCATTAACCAAAAACT
32049952 T
1 T
32049953 TTAACTTGAA
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 62 1.00
ACGTcount: A:0.41, C:0.20, G:0.15, T:0.25
Consensus pattern (61 bp):
TCTTCTTCAGGTAAGGAGCTCTGCAAAAAAGTAACAAGTAAGTTACCATTAACCAAAAACT
Found at i:32051095 original size:71 final size:71
Alignment explanation
Indices: 32050962--32051101 Score: 193
Period size: 73 Copynumber: 2.0 Consensus size: 71
32050952 ATTAATATTT
32050962 CACTATTAAATCTTATATATATATATATATAGTCTTTATTTTATTTAAAGGAAAAAAAAAAGAAA
1 CACTATTAAATCTTATATATATATATATATAGTC-TTATTTTATTTAAA-GAAAAAAAAAAGAAA
32051027 G-AAGAAA
64 GAAAGAAA
*
32051034 NCACTATT-AATACTTATATATATATATATATAGTC-TA-TTTATTT--GGAAAAAAAAAAGAAA
1 -CACTATTAAAT-CTTATATATATATATATATAGTCTTATTTTATTTAAAGAAAAAAAAAAGAAA
32051094 GAAAGAAA
64 GAAAGAAA
32051102 GAAAAAGCCT
Statistics
Matches: 64, Mismatches: 1, Indels: 9
0.86 0.01 0.12
Matches are distributed among these distances:
67 16 0.25
68 6 0.09
70 7 0.11
71 2 0.03
72 3 0.05
73 30 0.47
ACGTcount: A:0.51, C:0.06, G:0.09, T:0.34
Consensus pattern (71 bp):
CACTATTAAATCTTATATATATATATATATAGTCTTATTTTATTTAAAGAAAAAAAAAAGAAAGA
AAGAAA
Done.