# pfam_scan.pl, run at Mon Apr 29 11:16:50 2019
#
# Copyright (c) 2009 Genome Research Ltd
# Freely distributed under the GNU
# General Public License
#
# Authors: Jaina Mistry (jaina@ebi.ac.uk),
# Rob Finn (rdf@ebi.ac.uk)
#
# This is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
# Foundation; either version 2 of the License, or (at your option) any later version.
# This program is distributed in the hope that it will be useful, but WITHOUT
# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
# FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
# details.
#
# You should have received a copy of the GNU General Public License along with
# this program. If not, see .
# = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
# query sequence file: analysis/genomeInfo/gosArb/CGP/BGI/cds.faa
# searching against: /home/wangdehe/downloads/PfamScan/data/Pfam-A.hmm, with cut off --cut_ga
# resolve clan overlaps: on
# predict active sites: off
# = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
#
#
Cotton_A_03623_CDS 48 133 48 133 PF00081.22 Sod_Fe_N Domain 1 82 82 98.2 2.8e-28 1 No_clan
Cotton_A_03623_CDS 140 258 140 258 PF02777.18 Sod_Fe_C Domain 1 102 102 123.2 4.2e-36 1 No_clan
Cotton_A_37883_CDS 45 81 42 81 PF08263.12 LRRNT_2 Family 5 41 41 37.0 3.1e-09 1 No_clan
Cotton_A_37883_CDS 181 198 181 210 PF00560.33 LRR_1 Repeat 1 18 23 10.1 1.1 1 CL0022
Cotton_A_37883_CDS 318 589 317 591 PF00069.25 Pkinase Domain 2 260 264 151.0 3.8e-44 1 CL0016
Cotton_A_00019_CDS 2 227 2 227 PF12481.8 DUF3700 Domain 1 228 228 347.5 2.8e-104 1 CL0052
Cotton_A_03667_CDS 116 206 114 209 PF01248.26 Ribosomal_L7Ae Domain 3 92 95 87.8 2.9e-25 1 CL0101
Cotton_A_19874_CDS 14 105 14 108 PF12776.7 Myb_DNA-bind_3 Domain 1 93 96 72.2 5.5e-20 1 CL0123
Cotton_A_34469_CDS 302 348 300 348 PF00010.26 HLH Domain 4 53 53 50.8 1.2e-13 1 No_clan
Cotton_A_13785_CDS 224 271 223 272 PF00010.26 HLH Domain 2 52 53 45.2 6.5e-12 1 No_clan
Cotton_A_00685_CDS 16 105 15 106 PF02519.14 Auxin_inducible Family 2 89 90 95.2 1.9e-27 1 No_clan
Cotton_A_02441_CDS 92 118 90 119 PF14383.6 VARLMGL Domain 4 30 32 34.4 1.1e-08 1 No_clan
Cotton_A_02441_CDS 192 236 192 236 PF12552.8 DUF3741 Family 1 45 45 71.1 5.2e-20 1 No_clan
Cotton_A_02441_CDS 841 989 839 989 PF14309.6 DUF4378 Family 3 165 165 95.0 6.3e-27 1 No_clan
Cotton_A_19861_CDS 229 408 229 408 PF04833.15 COBRA Family 1 165 165 206.4 2.5e-61 1 No_clan
Cotton_A_11915_CDS 66 152 51 155 PF00072.24 Response_reg Domain 23 109 112 64.8 7.1e-18 1 CL0304
Cotton_A_11915_CDS 229 280 229 280 PF00249.31 Myb_DNA-binding Domain 1 46 46 28.4 1.4e-06 1 CL0123
Cotton_A_14668_CDS 28 158 27 159 PF00004.29 AAA Domain 2 131 132 62.5 5.4e-17 1 CL0023
Cotton_A_17016_CDS 9 62 1 66 PF13456.6 RVT_3 Domain 36 89 124 30.7 2.3e-07 1 CL0219
Cotton_A_37679_CDS 136 189 136 192 PF04818.13 CTD_bind Family 1 58 63 33.9 4.1e-08 1 No_clan
Cotton_A_01550_CDS 263 431 263 431 PF06911.12 Senescence Family 1 183 183 147.5 5.2e-43 1 No_clan
Cotton_A_20708_CDS 149 306 149 307 PF13328.6 HD_4 Family 1 155 156 143.8 3.5e-42 1 CL0237
Cotton_A_20708_CDS 375 491 373 493 PF04607.17 RelA_SpoT Family 4 110 117 78.0 6.8e-22 1 CL0260
Cotton_A_20708_CDS 562 621 562 621 PF02824.21 TGS Family 1 60 60 69.2 2.2e-19 1 CL0072
Cotton_A_34405_CDS 250 333 250 334 PF02922.18 CBM_48 Domain 1 83 84 64.9 6.5e-18 1 CL0369
Cotton_A_34405_CDS 371 436 368 451 PF00128.24 Alpha-amylase Domain 10 74 337 38.2 1.2e-09 1 CL0058
Cotton_A_34405_CDS 842 936 842 937 PF02806.18 Alpha-amylase_C Domain 1 95 96 82.7 2e-23 1 CL0369
Cotton_A_10902_CDS 40 166 39 167 PF00988.22 CPSase_sm_chain Domain 2 127 128 162.5 4e-48 1 CL0364
Cotton_A_10902_CDS 229 403 227 404 PF00117.28 GATase Domain 3 189 190 157.9 2.5e-46 1 CL0014
Cotton_A_23986_CDS 16 54 5 58 PF01344.25 Kelch_1 Repeat 11 42 46 25.2 9.2e-06 1 CL0186
Cotton_A_11062_CDS 55 293 47 305 PF00450.22 Peptidase_S10 Domain 12 255 419 274.8 1.7e-81 1 CL0028
Cotton_A_18892_CDS 166 440 166 441 PF06814.13 Lung_7-TM_R Family 1 294 295 317.9 6e-95 1 CL0192
Cotton_A_35083_CDS 33 101 31 103 PF01363.21 FYVE Domain 3 66 68 64.2 8.9e-18 1 CL0390
Cotton_A_35083_CDS 349 593 341 604 PF00118.24 Cpn60_TCP1 Family 137 368 491 112.2 2.5e-32 1 No_clan
Cotton_A_35083_CDS 1499 1665 1491 1668 PF01504.18 PIP5K Family 10 168 274 114.6 4.7e-33 1 CL0016
Cotton_A_20758_CDS 42 215 28 216 PF08787.11 Alginate_lyase2 Domain 5 235 236 66.2 3.9e-18 1 CL0004
Cotton_A_02916_CDS 64 129 64 130 PF00462.24 Glutaredoxin Domain 1 59 60 25.6 1e-05 1 CL0172
Cotton_A_06320_CDS 460 493 456 493 PF00400.32 WD40 Repeat 6 38 38 23.8 5.5e-05 1 CL0186
Cotton_A_06320_CDS 568 603 566 603 PF00400.32 WD40 Repeat 3 38 38 30.7 3.8e-07 1 CL0186
Cotton_A_06320_CDS 608 645 607 645 PF00400.32 WD40 Repeat 2 38 38 20.7 0.00054 1 CL0186
Cotton_A_25011_CDS 115 177 114 177 PF00226.31 DnaJ Domain 2 63 63 68.8 3.2e-19 1 CL0392
Cotton_A_31793_CDS 108 486 98 489 PF00860.20 Xan_ur_permease Family 36 386 389 95.7 2.3e-27 1 CL0062
Cotton_A_35096_CDS 45 100 44 104 PF00013.29 KH_1 Domain 2 58 66 41.2 1e-10 1 CL0007
Cotton_A_35096_CDS 140 207 140 208 PF00013.29 KH_1 Domain 1 65 66 57.1 1.1e-15 1 CL0007
Cotton_A_35096_CDS 275 323 274 326 PF00013.29 KH_1 Domain 2 51 66 44.4 1.1e-11 1 CL0007
Cotton_A_35096_CDS 360 427 360 429 PF00013.29 KH_1 Domain 1 64 66 46.5 2.5e-12 1 CL0007
Cotton_A_22841_CDS 32 86 32 89 PF14226.6 DIOX_N Family 1 54 118 35.8 1.1e-08 1 CL0029
Cotton_A_27419_CDS 130 401 121 407 PF00069.25 Pkinase Domain 38 255 264 90.4 1.2e-25 1 CL0016
Cotton_A_24147_CDS 1 66 1 67 PF11820.8 DUF3339 Family 1 66 67 116.9 3.3e-34 1 No_clan
Cotton_A_10961_CDS 57 205 56 205 PF04043.15 PMEI Domain 2 154 154 82.1 5e-23 1 No_clan
Cotton_A_10961_CDS 353 648 353 649 PF01095.19 Pectinesterase Family 1 297 298 413.3 3.7e-124 1 CL0268
Cotton_A_38553_CDS 7 127 7 128 PF00241.20 Cofilin_ADF Domain 1 120 121 129.3 6.3e-38 1 CL0092
Cotton_A_36025_CDS 32 286 32 287 PF07651.16 ANTH Domain 1 276 277 183.4 4.2e-54 1 CL0009
Cotton_A_21885_CDS 187 625 187 626 PF12899.7 Glyco_hydro_100 Domain 1 434 435 714.4 4.2e-215 1 CL0059
Cotton_A_17076_CDS 54 226 54 227 PF02330.16 MAM33 Domain 1 211 212 105.3 4e-30 1 No_clan
Cotton_A_03346_CDS 119 379 118 382 PF12697.7 Abhydrolase_6 Domain 2 217 220 66.8 4e-18 1 CL0028
Cotton_A_16291_CDS 1 291 1 297 PF01301.19 Glyco_hydro_35 Domain 3 302 316 353.0 1.8e-105 1 CL0058
Cotton_A_16291_CDS 290 339 274 339 PF17834.1 GHD Domain 23 72 72 75.1 3.3e-21 1 CL0369
Cotton_A_16291_CDS 513 596 500 601 PF13364.6 BetaGal_dom4_5 Domain 24 106 114 24.9 2.3e-05 1 CL0202
Cotton_A_12046_CDS 73 160 73 160 PF03330.18 DPBB_1 Domain 1 83 83 77.4 7.5e-22 1 CL0199
Cotton_A_12046_CDS 171 248 171 248 PF01357.21 Pollen_allerg_1 Domain 1 80 80 93.7 5e-27 1 CL0159
Cotton_A_08415_CDS 37 217 36 217 PF00227.26 Proteasome Domain 2 190 190 158.2 1.6e-46 1 CL0052
Cotton_A_17896_CDS 33 72 32 75 PF00646.33 F-box Domain 2 41 48 33.7 2.3e-08 1 CL0271
Cotton_A_08539_CDS 12 139 12 140 PF12165.8 Alfin Family 1 126 127 228.1 1.7e-68 1 No_clan
Cotton_A_08539_CDS 200 248 199 249 PF00628.29 PHD Domain 2 51 52 41.7 7.6e-11 1 CL0390
Cotton_A_23854_CDS 49 79 26 178 PF05097.12 DUF688 Family 60 95 446 21.1 0.00015 1 No_clan
Cotton_A_21208_CDS 4 88 4 88 PF01780.19 Ribosomal_L37ae Family 1 85 85 134.1 1.4e-39 1 CL0167
Cotton_A_33422_CDS 283 679 282 682 PF08424.10 NRDE-2 Family 2 319 322 293.7 1.5e-87 1 No_clan
Cotton_A_02579_CDS 6 201 1 202 PF05996.12 Fe_bilin_red Family 33 227 228 199.7 5.4e-59 1 No_clan
Cotton_A_06046_CDS 26 60 24 60 PF13713.6 BRX_N Domain 3 37 37 53.0 2.1e-14 1 No_clan
Cotton_A_36771_CDS 11 169 11 171 PF00071.22 Ras Domain 1 159 162 193.3 2e-57 1 CL0023
Cotton_A_10232_CDS 57 90 57 90 PF02375.17 JmjN Family 1 34 34 56.1 2.6e-15 1 CL0029
Cotton_A_10232_CDS 296 412 296 412 PF02373.22 JmjC Domain 1 114 114 155.2 8e-46 1 CL0029
Cotton_A_10232_CDS 519 569 519 571 PF02928.16 zf-C5HC2 Domain 1 52 54 44.2 1.9e-11 1 No_clan
Cotton_A_10232_CDS 826 870 822 870 PF05964.14 FYRN Family 6 51 51 35.0 9.6e-09 1 No_clan
Cotton_A_10232_CDS 877 964 877 968 PF05965.14 FYRC Family 1 81 84 79.6 1.5e-22 1 No_clan
Cotton_A_01187_CDS 58 232 58 234 PF02330.16 MAM33 Domain 1 210 212 59.6 4e-16 1 No_clan
Cotton_A_08992_CDS 113 327 31 375 PF03097.18 BRO1 Domain 83 291 389 47.4 1.2e-12 1 No_clan
Cotton_A_03383_CDS 23 323 23 325 PF08449.11 UAA Family 1 300 302 251.9 7.8e-75 1 CL0184
Cotton_A_24184_CDS 27 142 27 146 PF16363.5 GDP_Man_Dehyd Domain 1 116 332 126.5 1.5e-36 1 CL0063
Cotton_A_23549_CDS 188 235 188 235 PF10533.9 Plant_zn_clust Domain 1 49 49 50.9 1.1e-13 1 No_clan
Cotton_A_23549_CDS 239 295 238 296 PF03106.15 WRKY Domain 2 58 59 90.4 6.3e-26 1 CL0274
Cotton_A_24172_CDS 334 602 331 603 PF07714.17 Pkinase_Tyr Domain 5 258 259 101.8 3.6e-29 1 CL0016
Cotton_A_07238_CDS 39 154 39 155 PF16983.5 MFS_MOT1 Family 1 110 111 100.1 9.3e-29 1 CL0062
Cotton_A_07238_CDS 279 397 278 397 PF16983.5 MFS_MOT1 Family 2 111 111 118.5 1.8e-34 1 CL0062
Cotton_A_27905_CDS 6 140 6 142 PF01090.19 Ribosomal_S19e Family 1 135 137 194.2 6.9e-58 1 CL0123
Cotton_A_31817_CDS 428 531 427 532 PF09740.9 DUF2043 Family 2 105 106 99.9 1.1e-28 1 No_clan
Cotton_A_04399_CDS 1 199 1 202 PF04654.12 DUF599 Family 10 206 210 232.3 3.8e-69 1 No_clan
Cotton_A_14895_CDS 9 77 9 78 PF00076.22 RRM_1 Domain 1 69 70 51.1 8.9e-14 1 CL0221
Cotton_A_41281_CDS 33 382 33 382 PF06136.13 DUF966 Family 1 377 377 318.7 8.2e-95 1 No_clan
Cotton_A_17629_CDS 32 127 31 128 PF01657.17 Stress-antifung Family 2 94 95 66.4 2.7e-18 1 No_clan
Cotton_A_17629_CDS 147 238 143 240 PF01657.17 Stress-antifung Family 7 93 95 50.8 2e-13 1 No_clan
Cotton_A_17629_CDS 348 611 345 615 PF07714.17 Pkinase_Tyr Domain 4 255 259 163.1 7.5e-48 1 CL0016
Cotton_A_12636_CDS 12 46 8 46 PF00400.32 WD40 Repeat 5 38 38 30.0 6.4e-07 1 CL0186
Cotton_A_12636_CDS 53 88 50 88 PF00400.32 WD40 Repeat 4 38 38 13.0 0.14 1 CL0186
Cotton_A_12636_CDS 93 130 92 130 PF00400.32 WD40 Repeat 2 38 38 24.9 2.5e-05 1 CL0186
Cotton_A_12636_CDS 216 256 216 256 PF00400.32 WD40 Repeat 1 38 38 19.2 0.0016 1 CL0186
Cotton_A_12636_CDS 263 298 260 298 PF00400.32 WD40 Repeat 4 38 38 30.0 6.4e-07 1 CL0186
Cotton_A_22208_CDS 47 112 47 112 PF00191.20 Annexin Family 1 66 66 61.9 4.5e-17 1 No_clan
Cotton_A_33625_CDS 76 127 73 130 PF03168.13 LEA_2 Domain 4 55 101 32.5 9.3e-08 1 CL0159
Cotton_A_12909_CDS 3 211 3 212 PF00091.25 Tubulin Domain 1 196 197 234.3 1.3e-69 1 CL0566
Cotton_A_17395_CDS 17 58 12 59 PF12937.7 F-box-like Domain 6 47 48 25.5 9.1e-06 1 CL0271
Cotton_A_38003_CDS 39 451 38 458 PF00067.22 p450 Domain 2 419 463 328.2 7.8e-98 1 No_clan
Cotton_A_09432_CDS 88 159 86 160 PF10539.9 Dev_Cell_Death Domain 56 126 127 49.8 2.9e-13 1 No_clan
Cotton_A_30082_CDS 119 212 109 213 PF03754.13 DUF313 Family 12 112 113 67.3 1.3e-18 1 CL0405
Cotton_A_36447_CDS 5 75 5 75 PF00076.22 RRM_1 Domain 1 70 70 49.5 2.8e-13 1 CL0221
Cotton_A_10026_CDS 14 98 12 99 PF03083.16 MtN3_slv Family 3 86 87 92.8 1e-26 1 CL0141
Cotton_A_10026_CDS 133 218 133 219 PF03083.16 MtN3_slv Family 1 86 87 93.4 6.6e-27 1 CL0141
Cotton_A_19442_CDS 29 122 29 124 PF14363.6 AAA_assoc Family 1 94 96 85.8 1.9e-24 1 No_clan
Cotton_A_19442_CDS 245 287 244 300 PF00004.29 AAA Domain 2 50 132 26.5 6.8e-06 1 CL0023
Cotton_A_21723_CDS 179 372 175 372 PF00687.21 Ribosomal_L1 Domain 4 204 204 149.0 1.5e-43 1 No_clan
Cotton_A_21466_CDS 15 149 6 149 PF04043.15 PMEI Domain 14 154 154 65.9 5.1e-18 1 No_clan
Cotton_A_21466_CDS 203 480 203 480 PF01095.19 Pectinesterase Family 1 273 298 376.9 4.6e-113 1 CL0268
Cotton_A_03617_CDS 71 162 69 187 PF02466.19 Tim17 Family 3 92 111 35.4 1.1e-08 1 No_clan
Cotton_A_03617_CDS 294 418 289 422 PF15982.5 TMEM135_C_rich Domain 9 130 134 30.2 5.6e-07 1 No_clan
Cotton_A_35074_CDS 20 214 20 219 PF00069.25 Pkinase Domain 1 188 264 152.2 1.7e-44 1 CL0016
Cotton_A_29210_CDS 8 501 8 502 PF04180.14 LTV Family 1 383 383 46.6 4e-12 1 No_clan
Cotton_A_26450_CDS 148 183 148 183 PF05553.11 DUF761 Family 1 36 36 66.6 1e-18 1 No_clan
Cotton_A_24124_CDS 1 148 1 149 PF05405.14 Mt_ATP-synt_B Family 17 162 163 148.1 1.7e-43 1 CL0255
Cotton_A_13364_CDS 9 108 8 138 PF01370.21 Epimerase Family 2 103 241 22.5 6.7e-05 1 CL0063
Cotton_A_24116_CDS 8 161 7 169 PF00106.25 adh_short Domain 2 138 195 100.2 9.7e-29 1 CL0063
Cotton_A_01595_CDS 35 128 35 128 PF14363.6 AAA_assoc Family 1 96 96 78.0 5.4e-22 1 No_clan
Cotton_A_01595_CDS 249 379 248 380 PF00004.29 AAA Domain 2 131 132 64.5 1.3e-17 1 CL0023
Cotton_A_01055_CDS 3 285 1 289 PF00332.18 Glyco_hydro_17 Domain 26 310 313 349.2 2.6e-104 1 CL0058
Cotton_A_19974_CDS 189 475 189 476 PF06814.13 Lung_7-TM_R Family 1 294 295 354.8 3.5e-106 1 CL0192
Cotton_A_06707_CDS 22 117 2 117 PF02519.14 Auxin_inducible Family 8 90 90 100.7 3.6e-29 1 No_clan
Cotton_A_26084_CDS 79 215 79 217 PF01565.23 FAD_binding_4 Domain 1 136 139 93.7 7.7e-27 1 CL0077
Cotton_A_26084_CDS 475 533 475 533 PF08031.12 BBE Domain 1 46 46 78.0 4.2e-22 1 CL0277
Cotton_A_10757_CDS 23 292 23 292 PF01193.24 RNA_pol_L Domain 1 69 69 73.3 7.6e-21 1 CL0509
Cotton_A_10757_CDS 53 180 53 180 PF01000.26 RNA_pol_A_bac Domain 1 112 112 112.0 1.8e-32 1 No_clan
Cotton_A_11722_CDS 32 285 32 287 PF07651.16 ANTH Domain 1 275 277 205.0 1.1e-60 1 CL0009
Cotton_A_01250_CDS 24 483 24 484 PF00171.22 Aldedh Family 1 461 462 487.3 3.7e-146 1 CL0099
Cotton_A_08766_CDS 153 210 147 212 PF12352.8 V-SNARE_C Domain 7 64 66 28.0 2e-06 1 CL0147
Cotton_A_34801_CDS 2 407 1 409 PF00860.20 Xan_ur_permease Family 2 387 389 218.5 1.2e-64 1 CL0062
Cotton_A_29295_CDS 19 188 19 188 PF14215.6 bHLH-MYC_N Family 1 175 175 101.8 5e-29 1 CL0161
Cotton_A_06740_CDS 32 76 30 76 PF08263.12 LRRNT_2 Family 3 41 41 40.5 2.5e-10 1 No_clan
Cotton_A_06740_CDS 286 307 285 307 PF00560.33 LRR_1 Repeat 2 23 23 11.3 0.44 1 CL0022
Cotton_A_06740_CDS 357 416 356 416 PF13855.6 LRR_8 Repeat 2 61 61 34.0 1.8e-08 1 CL0022
Cotton_A_06740_CDS 428 488 427 488 PF13855.6 LRR_8 Repeat 2 61 61 39.6 3.2e-10 1 CL0022
Cotton_A_06740_CDS 526 542 526 547 PF00560.33 LRR_1 Repeat 1 17 23 10.6 0.74 1 CL0022
Cotton_A_06740_CDS 650 670 649 671 PF00560.33 LRR_1 Repeat 2 22 23 9.9 1.2 1 CL0022
Cotton_A_06740_CDS 672 731 671 731 PF13855.6 LRR_8 Repeat 2 61 61 36.0 4.4e-09 1 CL0022
Cotton_A_06740_CDS 821 877 819 877 PF13855.6 LRR_8 Repeat 5 61 61 31.6 1e-07 1 CL0022
Cotton_A_09130_CDS 149 196 149 198 PF13041.6 PPR_2 Repeat 1 48 50 37.6 1.9e-09 1 CL0020
Cotton_A_09130_CDS 225 251 225 252 PF01535.20 PPR Family 4 30 31 13.2 0.082 1 CL0020
Cotton_A_09130_CDS 253 279 253 282 PF01535.20 PPR Family 1 27 31 26.0 6.8e-06 1 CL0020
Cotton_A_09130_CDS 284 309 284 311 PF01535.20 PPR Family 1 26 31 14.4 0.035 1 CL0020
Cotton_A_09130_CDS 312 360 312 361 PF13041.6 PPR_2 Repeat 1 49 50 47.4 1.6e-12 1 CL0020
Cotton_A_09130_CDS 413 461 413 463 PF13041.6 PPR_2 Repeat 1 48 50 44.2 1.6e-11 1 CL0020
Cotton_A_09301_CDS 10 70 10 70 PF13921.6 Myb_DNA-bind_6 Domain 1 60 60 48.2 9.1e-13 1 CL0123
Cotton_A_09301_CDS 406 654 406 654 PF11831.8 Myb_Cef Family 1 238 238 205.5 9e-61 1 No_clan
Cotton_A_05665_CDS 29 186 27 186 PF04043.15 PMEI Domain 3 154 154 69.7 3.5e-19 1 No_clan
Cotton_A_05665_CDS 230 520 230 520 PF01095.19 Pectinesterase Family 1 298 298 398.5 1.2e-119 1 CL0268
Cotton_A_38863_CDS 3 226 1 227 PF11265.8 Med25_VWA Family 5 213 214 163.1 7.8e-48 1 CL0128
Cotton_A_00596_CDS 24 63 24 63 PF00187.19 Chitin_bind_1 Domain 1 38 38 47.3 2e-12 1 No_clan
Cotton_A_00596_CDS 88 322 88 322 PF00182.19 Glyco_hydro_19 Domain 1 232 232 362.3 1.3e-108 1 CL0037
Cotton_A_08616_CDS 363 623 362 623 PF00069.25 Pkinase Domain 2 264 264 222.6 5.7e-66 1 CL0016
Cotton_A_06390_CDS 110 288 94 290 PF00933.21 Glyco_hydro_3 Domain 84 251 319 100.7 9.9e-29 1 CL0058
Cotton_A_27266_CDS 108 168 108 168 PF13855.6 LRR_8 Repeat 1 61 61 28.5 9.1e-07 1 CL0022
Cotton_A_27266_CDS 494 750 484 753 PF07714.17 Pkinase_Tyr Domain 15 256 259 52.6 3.8e-14 1 CL0016
Cotton_A_23928_CDS 24 121 22 122 PF13947.6 GUB_WAK_bind Domain 3 105 106 73.0 2.9e-20 1 No_clan
Cotton_A_23928_CDS 226 331 225 332 PF13947.6 GUB_WAK_bind Domain 2 105 106 79.5 2.7e-22 1 No_clan
Cotton_A_23928_CDS 612 884 612 887 PF00069.25 Pkinase Domain 1 258 264 176.9 4.8e-52 1 CL0016
Cotton_A_20515_CDS 2 139 1 139 PF00295.17 Glyco_hydro_28 Domain 116 251 325 153.5 7e-45 1 CL0268
Cotton_A_08763_CDS 174 441 173 444 PF00069.25 Pkinase Domain 2 259 264 165.9 1.1e-48 1 CL0016
Cotton_A_24420_CDS 94 427 93 434 PF03016.15 Exostosin Family 2 294 300 302.2 3.7e-90 1 No_clan
Cotton_A_35761_CDS 13 135 11 149 PF05687.13 BES1_N Family 3 128 152 206.1 3.5e-61 1 No_clan
Cotton_A_30237_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 50.4 1.9e-13 1 CL0123
Cotton_A_30237_CDS 68 110 67 112 PF00249.31 Myb_DNA-binding Domain 2 44 46 55.2 5.9e-15 1 CL0123
Cotton_A_24433_CDS 10 42 10 43 PF12854.7 PPR_1 Repeat 1 33 34 40.9 1.2e-10 1 CL0020
Cotton_A_24433_CDS 49 98 49 98 PF13041.6 PPR_2 Repeat 1 50 50 50.9 1.3e-13 1 CL0020
Cotton_A_37150_CDS 53 104 51 105 PF04770.12 ZF-HD_dimer Family 3 54 55 103.1 7e-30 1 No_clan
Cotton_A_02707_CDS 93 597 93 597 PF03141.16 Methyltransf_29 Family 1 506 506 728.3 4.1e-219 1 CL0063
Cotton_A_34670_CDS 62 256 61 256 PF03462.18 PCRF Domain 2 193 193 231.0 1e-68 1 No_clan
Cotton_A_34670_CDS 263 373 263 373 PF00472.20 RF-1 Family 1 116 116 125.1 1.2e-36 1 CL0337
Cotton_A_34913_CDS 69 129 23 137 PF04618.12 HD-ZIP_N Domain 47 102 110 34.0 3.4e-08 1 No_clan
Cotton_A_34913_CDS 162 213 161 215 PF00046.29 Homeodomain Domain 2 53 57 51.7 5.8e-14 1 CL0123
Cotton_A_01559_CDS 78 363 78 363 PF00069.25 Pkinase Domain 1 264 264 216.7 3.6e-64 1 CL0016
Cotton_A_01559_CDS 410 471 390 473 PF13499.6 EF-hand_7 Domain 3 69 71 36.6 4.6e-09 1 CL0220
Cotton_A_01559_CDS 489 544 487 545 PF13499.6 EF-hand_7 Domain 3 70 71 44.8 1.3e-11 1 CL0220
Cotton_A_17871_CDS 25 64 24 64 PF08263.12 LRRNT_2 Family 2 41 41 48.8 6.3e-13 1 No_clan
Cotton_A_17871_CDS 116 175 115 175 PF13855.6 LRR_8 Repeat 2 61 61 32.0 7.5e-08 1 CL0022
Cotton_A_17871_CDS 298 564 297 566 PF00069.25 Pkinase Domain 2 260 264 150.2 6.8e-44 1 CL0016
Cotton_A_24128_CDS 12 231 11 232 PF05648.14 PEX11 Family 2 221 223 151.3 2.7e-44 1 No_clan
Cotton_A_08892_CDS 95 121 63 121 PF03765.15 CRAL_TRIO_N Domain 29 54 54 28.5 1.2e-06 1 CL0214
Cotton_A_08892_CDS 146 311 144 311 PF00650.20 CRAL_TRIO Domain 3 159 159 112.7 1.3e-32 1 CL0512
Cotton_A_15052_CDS 310 413 232 418 PF10296.9 MMM1 Family 90 200 332 21.9 7.8e-05 1 No_clan
Cotton_A_20997_CDS 271 407 204 462 PF00201.18 UDPGT Family 261 380 499 64.4 8.7e-18 1 CL0113
Cotton_A_07146_CDS 25 232 25 233 PF01987.17 AIM24 Family 1 200 201 145.7 1.5e-42 1 CL0029
Cotton_A_04936_CDS 46 249 46 249 PF04720.12 PDDEXK_6 Family 1 221 221 208.8 9.8e-62 1 No_clan
Cotton_A_13207_CDS 40 94 39 95 PF00046.29 Homeodomain Domain 2 56 57 62.0 3.4e-17 1 CL0123
Cotton_A_13207_CDS 96 137 96 138 PF02183.18 HALZ Coiled-coil 1 42 43 60.1 1.8e-16 1 No_clan
Cotton_A_13399_CDS 60 145 60 145 PF03330.18 DPBB_1 Domain 1 83 83 77.4 7.8e-22 1 CL0199
Cotton_A_13399_CDS 156 233 156 233 PF01357.21 Pollen_allerg_1 Domain 1 80 80 100.2 4.9e-29 1 CL0159
Cotton_A_02513_CDS 90 227 89 229 PF00781.24 DAGK_cat Family 2 124 126 95.1 2.2e-27 1 CL0240
Cotton_A_02513_CDS 281 458 281 458 PF00609.19 DAGK_acc Family 1 160 160 145.2 2.1e-42 1 No_clan
Cotton_A_21738_CDS 153 300 152 300 PF08231.12 SYF2 Domain 2 159 159 126.0 1.7e-36 1 No_clan
Cotton_A_14389_CDS 239 429 230 441 PF00201.18 UDPGT Family 245 409 499 77.1 1.2e-21 1 CL0113
Cotton_A_11842_CDS 3 694 3 695 PF00012.20 HSP70 Family 1 598 599 544.1 3.2e-163 1 CL0108
Cotton_A_20610_CDS 233 474 233 474 PF07059.12 DUF1336 Family 1 229 229 197.2 4e-58 1 No_clan
Cotton_A_15494_CDS 1 185 1 193 PF03721.14 UDPG_MGDP_dh_N Domain 1 183 187 226.9 1.4e-67 1 CL0063
Cotton_A_15494_CDS 209 303 209 304 PF00984.19 UDPG_MGDP_dh Domain 1 93 94 110.7 3e-32 1 CL0106
Cotton_A_15494_CDS 327 450 327 451 PF03720.15 UDPG_MGDP_dh_C Domain 1 104 105 122.0 1.3e-35 1 CL0039
Cotton_A_21289_CDS 317 527 316 586 PF00069.25 Pkinase Domain 2 203 264 146.8 7.2e-43 1 CL0016
Cotton_A_24927_CDS 1 47 1 47 PF11421.8 Synthase_beta Family 1 49 49 46.9 3.4e-12 1 No_clan
Cotton_A_24927_CDS 89 155 89 155 PF02874.23 ATP-synt_ab_N Domain 1 69 69 72.5 3.1e-20 1 CL0275
Cotton_A_24927_CDS 212 433 212 433 PF00006.25 ATP-synt_ab Domain 1 213 213 205.5 7.2e-61 1 CL0023
Cotton_A_35709_CDS 141 185 138 185 PF02234.19 CDI Family 4 49 49 45.0 9.3e-12 1 No_clan
Cotton_A_11430_CDS 87 150 86 150 PF00808.23 CBFD_NFYB_HMF Domain 2 65 65 66.5 1.9e-18 1 CL0012
Cotton_A_12754_CDS 186 554 184 554 PF03514.14 GRAS Family 3 374 374 448.3 1.9e-134 1 CL0063
Cotton_A_09181_CDS 60 545 59 546 PF00982.21 Glyco_transf_20 Family 2 473 474 625.5 5.3e-188 1 CL0113
Cotton_A_09181_CDS 595 829 595 830 PF02358.16 Trehalose_PPase Family 1 232 233 253.6 1.3e-75 1 CL0137
Cotton_A_11050_CDS 1 220 1 222 PF02121.18 IP_trans Family 24 244 247 270.2 1.7e-80 1 CL0209
Cotton_A_26129_CDS 30 267 30 267 PF00230.20 MIP Family 1 227 227 290.5 9.1e-87 1 No_clan
Cotton_A_14662_CDS 63 348 40 353 PF00150.18 Cellulase Domain 21 276 281 51.7 8e-14 1 CL0058
Cotton_A_08840_CDS 44 132 40 135 PF00892.20 EamA Family 47 134 137 28.0 2e-06 1 CL0184
Cotton_A_29244_CDS 159 397 158 397 PF00931.22 NB-ARC Domain 2 252 252 224.8 9.8e-67 1 CL0023
Cotton_A_29244_CDS 536 595 536 596 PF13855.6 LRR_8 Repeat 1 60 61 45.9 3.4e-12 1 CL0022
Cotton_A_11992_CDS 13 149 12 153 PF04658.13 TAFII55_N Family 2 153 160 112.4 1.7e-32 1 CL0662
Cotton_A_27694_CDS 192 220 174 220 PF01344.25 Kelch_1 Repeat 19 46 46 20.6 0.00024 1 CL0186
Cotton_A_27694_CDS 222 268 222 269 PF01344.25 Kelch_1 Repeat 1 45 46 39.1 4.1e-10 1 CL0186
Cotton_A_09095_CDS 68 394 66 394 PF00704.28 Glyco_hydro_18 Domain 3 312 312 248.8 1.1e-73 1 CL0058
Cotton_A_16777_CDS 244 290 242 290 PF13041.6 PPR_2 Repeat 4 50 50 35.2 1.1e-08 1 CL0020
Cotton_A_16777_CDS 311 359 311 360 PF13041.6 PPR_2 Repeat 1 49 50 64.2 9e-18 1 CL0020
Cotton_A_16777_CDS 365 393 360 396 PF13812.6 PPR_3 Repeat 32 59 63 21.8 0.00015 1 CL0020
Cotton_A_16777_CDS 418 447 417 447 PF01535.20 PPR Family 2 31 31 11.3 0.34 1 CL0020
Cotton_A_16777_CDS 453 482 452 482 PF01535.20 PPR Family 2 31 31 26.7 4.1e-06 1 CL0020
Cotton_A_05113_CDS 69 230 69 230 PF16486.5 ArgoN Domain 1 138 138 107.2 9.7e-31 1 No_clan
Cotton_A_05113_CDS 242 290 241 291 PF08699.10 ArgoL1 Domain 2 51 52 57.0 1.1e-15 1 No_clan
Cotton_A_05113_CDS 296 427 296 428 PF02170.22 PAZ Domain 1 136 137 91.7 3.5e-26 1 CL0638
Cotton_A_05113_CDS 437 482 437 483 PF16488.5 ArgoL2 Family 1 46 47 49.1 5.2e-13 1 No_clan
Cotton_A_05113_CDS 491 538 490 572 PF16487.5 ArgoMid Domain 2 55 84 27.6 2.6e-06 1 No_clan
Cotton_A_05113_CDS 581 912 580 912 PF02171.17 Piwi Family 2 302 302 325.4 3.3e-97 1 CL0219
Cotton_A_11063_CDS 12 73 10 74 PF13499.6 EF-hand_7 Domain 3 70 71 56.2 3.5e-15 1 CL0220
Cotton_A_11063_CDS 83 146 83 147 PF13499.6 EF-hand_7 Domain 1 70 71 66.9 1.6e-18 1 CL0220
Cotton_A_19522_CDS 304 467 304 468 PF12295.8 Symplekin_C Family 1 185 186 137.3 6e-40 1 No_clan
Cotton_A_02811_CDS 35 115 35 115 PF02298.17 Cu_bind_like Domain 1 84 84 88.3 2.5e-25 1 CL0026
Cotton_A_39830_CDS 180 223 175 224 PF00010.26 HLH Domain 6 52 53 38.9 6.1e-10 1 No_clan
Cotton_A_22844_CDS 48 153 33 175 PF01490.18 Aa_trans Family 114 219 409 33.4 1.9e-08 1 CL0062
Cotton_A_11071_CDS 1 1177 1 1179 PF02463.19 SMC_N Domain 5 218 220 221.7 7.3e-66 1 CL0023
Cotton_A_11071_CDS 516 626 514 627 PF06470.13 SMC_hinge Domain 3 116 117 97.0 8.4e-28 1 No_clan
Cotton_A_24689_CDS 35 64 33 66 PF13181.6 TPR_8 Repeat 3 32 34 12.0 0.19 1 CL0020
Cotton_A_11776_CDS 81 163 80 175 PF01453.24 B_lectin Domain 2 89 105 61.7 7.8e-17 1 No_clan
Cotton_A_11776_CDS 493 756 489 758 PF00069.25 Pkinase Domain 6 260 264 165.4 1.6e-48 1 CL0016
Cotton_A_24678_CDS 79 317 44 319 PF08423.11 Rad51 Domain 18 253 255 109.1 2.1e-31 1 CL0023
Cotton_A_12714_CDS 9 70 9 71 PF03931.15 Skp1_POZ Domain 1 62 63 55.7 4.2e-15 1 CL0033
Cotton_A_12714_CDS 91 138 91 138 PF01466.19 Skp1 Domain 1 48 48 74.6 5e-21 1 No_clan
Cotton_A_14518_CDS 135 379 135 379 PF07250.11 Glyoxal_oxid_N Family 1 240 240 297.9 4.2e-89 1 No_clan
Cotton_A_14518_CDS 545 643 537 644 PF09118.11 DUF1929 Domain 7 95 96 76.9 1.1e-21 1 CL0159
Cotton_A_21917_CDS 5 76 3 76 PF02798.20 GST_N Domain 3 76 76 61.0 1e-16 1 CL0172
Cotton_A_21917_CDS 122 188 91 188 PF13410.6 GST_C_2 Domain 5 69 69 45.9 4.1e-12 1 CL0497
Cotton_A_02567_CDS 174 229 174 229 PF02045.15 CBFB_NFYA Family 1 56 56 92.6 1.6e-26 1 No_clan
Cotton_A_39295_CDS 38 71 37 74 PF04810.15 zf-Sec23_Sec24 Domain 2 35 39 39.5 4.3e-10 1 No_clan
Cotton_A_39295_CDS 76 132 59 134 PF03140.15 DUF247 Family 84 148 397 37.4 1.7e-09 1 No_clan
Cotton_A_26264_CDS 14 365 14 368 PF06068.13 TIP49 Domain 1 348 351 564.2 1.1e-169 1 CL0023
Cotton_A_26264_CDS 373 438 373 438 PF17856.1 TIP49_C Domain 1 66 66 65.3 4e-18 1 CL0671
Cotton_A_40105_CDS 339 483 278 496 PF00067.22 p450 Domain 298 432 463 59.2 3.2e-16 1 No_clan
Cotton_A_29418_CDS 9 79 9 79 PF08523.10 MBF1 Family 1 72 72 81.8 3.7e-23 1 No_clan
Cotton_A_29418_CDS 87 137 87 140 PF01381.22 HTH_3 Domain 1 51 55 45.5 5.7e-12 1 CL0123
Cotton_A_25935_CDS 65 183 65 184 PF09335.11 SNARE_assoc Family 1 119 120 85.9 2.8e-24 1 No_clan
Cotton_A_29665_CDS 29 320 29 320 PF17681.1 GCP_N_terminal Domain 1 306 306 249.0 8.1e-74 1 CL0540
Cotton_A_29665_CDS 323 389 323 393 PF04130.13 GCP_C_terminal Domain 1 68 309 47.2 2e-12 1 CL0540
Cotton_A_29665_CDS 392 615 390 618 PF04130.13 GCP_C_terminal Domain 100 300 309 136.1 1.7e-39 1 CL0540
Cotton_A_14108_CDS 89 131 49 140 PF12796.7 Ank_2 Repeat 40 75 83 29.0 1.2e-06 1 CL0465
Cotton_A_14108_CDS 163 186 161 189 PF13606.6 Ank_3 Repeat 3 28 31 19.1 0.0012 1 CL0465
Cotton_A_14108_CDS 213 288 209 294 PF12796.7 Ank_2 Repeat 12 75 83 39.0 9e-10 1 CL0465
Cotton_A_14108_CDS 429 511 428 533 PF13962.6 PGG Domain 2 83 116 70.7 8.3e-20 1 No_clan
Cotton_A_18551_CDS 15 109 15 109 PF12796.7 Ank_2 Repeat 1 83 83 54.4 1.4e-14 1 CL0465
Cotton_A_18551_CDS 112 184 108 188 PF12796.7 Ank_2 Repeat 25 79 83 42.0 1e-10 1 CL0465
Cotton_A_18551_CDS 195 235 187 235 PF13857.6 Ank_5 Repeat 15 56 56 31.3 1.8e-07 1 CL0465
Cotton_A_38266_CDS 11 131 10 132 PF02365.15 NAM Family 2 125 126 95.0 6.3e-27 1 No_clan
Cotton_A_22397_CDS 162 258 162 277 PF02362.21 B3 Family 1 84 101 77.1 7.7e-22 1 CL0405
Cotton_A_14610_CDS 33 135 30 158 PF13589.6 HATPase_c_3 Domain 4 106 137 51.6 8.3e-14 1 CL0025
Cotton_A_32760_CDS 34 96 33 148 PF08240.12 ADH_N Domain 2 62 109 33.5 3e-08 1 CL0296
Cotton_A_29558_CDS 36 186 32 186 PF04535.12 DUF588 Domain 6 150 150 130.3 4.8e-38 1 CL0396
Cotton_A_02892_CDS 5 55 2 70 PF17917.1 RT_RNaseH Domain 31 79 105 52.8 4e-14 1 CL0219
Cotton_A_09708_CDS 71 162 69 186 PF02466.19 Tim17 Family 3 92 111 33.6 4.1e-08 1 No_clan
Cotton_A_09708_CDS 293 422 289 422 PF15982.5 TMEM135_C_rich Domain 8 134 134 34.2 3.3e-08 1 No_clan
Cotton_A_35273_CDS 76 192 76 192 PF00903.25 Glyoxalase Domain 1 128 128 44.5 1.6e-11 1 CL0104
Cotton_A_28694_CDS 1 252 1 252 PF05695.12 DUF825 Family 460 713 1486 536.6 1.1e-160 1 No_clan
Cotton_A_21499_CDS 67 128 67 128 PF00226.31 DnaJ Domain 1 63 63 75.5 2.6e-21 1 CL0392
Cotton_A_39590_CDS 65 391 65 399 PF00295.17 Glyco_hydro_28 Domain 1 320 325 345.2 3.3e-103 1 CL0268
Cotton_A_02342_CDS 17 278 17 278 PF00069.25 Pkinase Domain 1 264 264 203.3 4.4e-60 1 CL0016
Cotton_A_32600_CDS 8 94 1 96 PF14368.6 LTP_2 Family 13 97 97 48.8 5.6e-13 1 CL0482
Cotton_A_26142_CDS 30 339 30 340 PF00657.22 Lipase_GDSL Family 1 199 200 48.6 9.4e-13 1 CL0264
Cotton_A_05727_CDS 100 386 93 393 PF05701.11 WEMBL Family 34 321 562 50.3 1.5e-13 1 No_clan
Cotton_A_26896_CDS 65 91 65 97 PF13450.6 NAD_binding_8 Domain 1 27 68 23.0 6.7e-05 1 CL0063
Cotton_A_26896_CDS 212 484 211 485 PF08491.10 SE Family 2 275 276 330.0 9.1e-99 1 CL0063
Cotton_A_28662_CDS 35 415 32 417 PF01490.18 Aa_trans Family 4 407 409 232.4 7.5e-69 1 CL0062
Cotton_A_03233_CDS 32 111 32 112 PF13774.6 Longin Domain 1 83 84 82.6 1.5e-23 1 No_clan
Cotton_A_03233_CDS 129 215 127 215 PF00957.21 Synaptobrevin Family 3 89 89 112.6 5.4e-33 1 CL0445
Cotton_A_30727_CDS 7 35 7 37 PF01535.20 PPR Family 1 29 31 27.1 3.1e-06 1 CL0020
Cotton_A_30727_CDS 38 67 38 68 PF01535.20 PPR Family 1 30 31 12.4 0.15 1 CL0020
Cotton_A_30727_CDS 69 97 69 99 PF01535.20 PPR Family 1 29 31 32.9 4.3e-08 1 CL0020
Cotton_A_30727_CDS 100 128 100 130 PF01535.20 PPR Family 1 29 31 25.4 1e-05 1 CL0020
Cotton_A_30727_CDS 132 160 131 161 PF01535.20 PPR Family 2 30 31 28.6 1e-06 1 CL0020
Cotton_A_30727_CDS 163 191 162 192 PF01535.20 PPR Family 2 30 31 19.3 0.00095 1 CL0020
Cotton_A_30727_CDS 194 222 193 223 PF01535.20 PPR Family 2 30 31 15.5 0.015 1 CL0020
Cotton_A_30727_CDS 255 281 255 285 PF01535.20 PPR Family 1 27 31 12.1 0.18 1 CL0020
Cotton_A_30727_CDS 284 330 283 332 PF13041.6 PPR_2 Repeat 2 48 50 34.8 1.3e-08 1 CL0020
Cotton_A_30727_CDS 385 432 384 433 PF13041.6 PPR_2 Repeat 2 49 50 43.3 3e-11 1 CL0020
Cotton_A_30727_CDS 459 488 458 488 PF01535.20 PPR Family 2 31 31 22.5 8.8e-05 1 CL0020
Cotton_A_01175_CDS 11 265 11 265 PF00069.25 Pkinase Domain 1 264 264 246.4 3e-73 1 CL0016
Cotton_A_01175_CDS 300 358 300 358 PF03822.14 NAF Domain 1 54 54 74.3 6.1e-21 1 CL0573
Cotton_A_32881_CDS 28 66 26 66 PF08263.12 LRRNT_2 Family 4 41 41 39.7 4.5e-10 1 No_clan
Cotton_A_32881_CDS 151 172 151 173 PF00560.33 LRR_1 Repeat 1 22 23 9.9 1.3 1 CL0022
Cotton_A_32881_CDS 175 197 175 197 PF00560.33 LRR_1 Repeat 1 23 23 10.2 0.97 1 CL0022
Cotton_A_32881_CDS 249 270 248 270 PF00560.33 LRR_1 Repeat 2 23 23 13.9 0.062 1 CL0022
Cotton_A_32881_CDS 417 433 416 433 PF13516.6 LRR_6 Repeat 2 18 24 10.5 0.51 1 CL0022
Cotton_A_32881_CDS 565 622 562 622 PF13855.6 LRR_8 Repeat 5 61 61 33.4 2.9e-08 1 CL0022
Cotton_A_32881_CDS 635 655 635 657 PF00560.33 LRR_1 Repeat 1 21 23 12.0 0.25 1 CL0022
Cotton_A_32881_CDS 770 1037 768 1039 PF00069.25 Pkinase Domain 3 260 264 144.3 4.2e-42 1 CL0016
Cotton_A_40863_CDS 134 332 132 333 PF16528.5 Exo84_C Domain 6 204 205 36.4 4.7e-09 1 CL0295
Cotton_A_08519_CDS 35 491 35 497 PF00067.22 p450 Domain 1 457 463 340.2 1.8e-101 1 No_clan
Cotton_A_17250_CDS 18 98 17 107 PF03214.13 RGP Family 2 84 342 106.9 1.2e-30 1 CL0110
Cotton_A_09011_CDS 199 575 198 575 PF00368.18 HMG-CoA_red Family 2 367 367 483.7 3.3e-145 1 No_clan
Cotton_A_41256_CDS 83 156 46 156 PF12796.7 Ank_2 Repeat 24 83 83 37.5 2.6e-09 1 CL0465
Cotton_A_41256_CDS 302 322 299 323 PF00642.24 zf-CCCH Family 5 26 27 21.6 0.00015 1 CL0537
Cotton_A_11209_CDS 222 299 187 333 PF01663.22 Phosphodiest Family 169 238 357 34.5 1.7e-08 1 CL0088
Cotton_A_07837_CDS 32 89 32 89 PF08246.12 Inhibitor_I29 Domain 1 58 58 56.3 3.2e-15 1 No_clan
Cotton_A_07837_CDS 117 332 117 332 PF00112.23 Peptidase_C1 Domain 1 218 218 277.6 9.3e-83 1 CL0125
Cotton_A_07837_CDS 360 407 360 407 PF00396.18 Granulin Family 1 42 42 39.8 4.2e-10 1 No_clan
Cotton_A_34839_CDS 38 501 38 506 PF00067.22 p450 Domain 1 456 463 254.3 2e-75 1 No_clan
Cotton_A_07908_CDS 84 264 84 264 PF14215.6 bHLH-MYC_N Family 1 175 175 185.1 1.3e-54 1 CL0161
Cotton_A_07908_CDS 473 518 471 519 PF00010.26 HLH Domain 4 52 53 41.2 1.1e-10 1 No_clan
Cotton_A_21091_CDS 11 97 8 103 PF12796.7 Ank_2 Repeat 4 76 83 28.9 1.3e-06 1 CL0465
Cotton_A_20497_CDS 128 274 123 276 PF01694.22 Rhomboid Family 7 148 150 99.9 1.3e-28 1 CL0207
Cotton_A_23421_CDS 6 222 5 226 PF00009.27 GTP_EFTU Domain 2 190 194 181.8 9.8e-54 1 CL0023
Cotton_A_23421_CDS 248 313 248 315 PF03144.25 GTP_EFTU_D2 Domain 1 72 74 54.6 1.1e-14 1 CL0575
Cotton_A_23421_CDS 322 429 321 430 PF03143.17 GTP_EFTU_D3 Domain 2 111 112 134.5 1.7e-39 1 No_clan
Cotton_A_01966_CDS 99 149 98 150 PF00847.20 AP2 Domain 2 53 54 48.3 8.8e-13 1 CL0081
Cotton_A_30261_CDS 62 248 45 249 PF12819.7 Malectin_like Domain 132 335 336 54.4 1.1e-14 1 CL0202
Cotton_A_25622_CDS 15 393 15 394 PF03097.18 BRO1 Domain 1 388 389 356.2 1.8e-106 1 No_clan
Cotton_A_25622_CDS 429 714 429 715 PF13949.6 ALIX_LYPXL_bnd Domain 1 294 295 247.6 1.6e-73 1 No_clan
Cotton_A_10105_CDS 136 402 134 403 PF00664.23 ABC_membrane Family 4 273 274 105.9 2.9e-30 1 CL0241
Cotton_A_10105_CDS 467 521 467 632 PF00005.27 ABC_tran Domain 1 49 137 31.8 1.7e-07 1 CL0023
Cotton_A_10105_CDS 686 901 653 918 PF00664.23 ABC_membrane Family 37 249 274 110.2 1.4e-31 1 CL0241
Cotton_A_10105_CDS 991 1139 991 1139 PF00005.27 ABC_tran Domain 1 137 137 102.7 2.3e-29 1 CL0023
Cotton_A_07706_CDS 60 170 28 170 PF08613.11 Cyclin Family 49 161 161 112.2 3e-32 1 CL0065
Cotton_A_03328_CDS 24 97 24 98 PF03110.14 SBP Domain 1 74 75 103.8 4.3e-30 1 No_clan
Cotton_A_40821_CDS 4 358 4 358 PF05631.14 MFS_5 Family 1 354 354 634.4 4.2e-191 1 CL0015
Cotton_A_02121_CDS 35 102 34 138 PF02469.22 Fasciclin Domain 2 75 128 22.1 0.00014 1 No_clan
Cotton_A_02121_CDS 215 326 195 326 PF02469.22 Fasciclin Domain 16 128 128 47.1 2.5e-12 1 No_clan
Cotton_A_16334_CDS 1 109 1 109 PF03514.14 GRAS Family 270 374 374 62.9 2.5e-17 1 CL0063
Cotton_A_36410_CDS 92 147 89 148 PF07889.12 DUF1664 Coiled-coil 2 59 124 77.2 1.1e-21 1 No_clan
Cotton_A_00828_CDS 24 63 23 63 PF08263.12 LRRNT_2 Family 2 41 41 41.5 1.2e-10 1 No_clan
Cotton_A_00828_CDS 115 174 114 174 PF13855.6 LRR_8 Repeat 2 61 61 27.5 2e-06 1 CL0022
Cotton_A_00828_CDS 287 558 286 560 PF00069.25 Pkinase Domain 2 260 264 154.3 3.8e-45 1 CL0016
Cotton_A_41065_CDS 20 214 20 220 PF00069.25 Pkinase Domain 1 187 264 138.6 2.4e-40 1 CL0016
Cotton_A_24733_CDS 42 183 41 183 PF04043.15 PMEI Domain 3 154 154 46.6 4.3e-12 1 No_clan
Cotton_A_12118_CDS 360 571 359 571 PF02919.15 Topoisom_I_N Family 2 213 213 320.8 3.4e-96 1 No_clan
Cotton_A_12118_CDS 574 799 574 800 PF01028.20 Topoisom_I Domain 1 231 232 306.6 8.5e-92 1 CL0382
Cotton_A_12118_CDS 835 903 834 903 PF14370.6 Topo_C_assoc Family 2 70 70 121.6 9.4e-36 1 No_clan
Cotton_A_20046_CDS 1 109 1 110 PF03468.14 XS Domain 3 112 113 125.4 1.2e-36 1 CL0221
Cotton_A_06603_CDS 51 193 50 193 PF03018.14 Dirigent Family 2 148 148 189.6 2.5e-56 1 CL0650
Cotton_A_13439_CDS 102 158 10 158 PF14510.6 ABC_trans_N Domain 30 81 81 48.5 1e-12 1 No_clan
Cotton_A_13439_CDS 183 365 183 367 PF00005.27 ABC_tran Domain 1 135 137 55.9 6.5e-15 1 CL0023
Cotton_A_13439_CDS 519 731 518 731 PF01061.24 ABC2_membrane Family 2 210 210 136.4 8.4e-40 1 CL0181
Cotton_A_13439_CDS 737 802 736 802 PF08370.11 PDR_assoc Family 2 65 65 87.6 3.2e-25 1 No_clan
Cotton_A_13439_CDS 875 1027 875 1027 PF00005.27 ABC_tran Domain 1 137 137 69.9 3e-19 1 CL0023
Cotton_A_13439_CDS 1172 1384 1172 1386 PF01061.24 ABC2_membrane Family 1 208 210 181.2 1.7e-53 1 CL0181
Cotton_A_11014_CDS 51 321 47 323 PF04258.13 Peptidase_A22B Family 5 282 284 305.5 4e-91 1 CL0130
Cotton_A_01690_CDS 42 104 41 105 PF13499.6 EF-hand_7 Domain 2 70 71 47.0 2.6e-12 1 CL0220
Cotton_A_01690_CDS 114 176 113 177 PF13499.6 EF-hand_7 Domain 2 70 71 46.8 3.1e-12 1 CL0220
Cotton_A_31833_CDS 90 188 90 188 PF04526.13 DUF568 Family 1 101 101 96.3 1.4e-27 1 No_clan
Cotton_A_23360_CDS 49 118 49 119 PF00076.22 RRM_1 Domain 1 69 70 66.5 1.3e-18 1 CL0221
Cotton_A_02766_CDS 227 286 225 286 PF00536.30 SAM_1 Domain 5 64 64 60.8 1.2e-16 1 CL0003
Cotton_A_04990_CDS 34 263 32 263 PF04720.12 PDDEXK_6 Family 3 221 221 244.4 1.2e-72 1 No_clan
Cotton_A_32174_CDS 210 399 197 423 PF00201.18 UDPGT Family 205 380 499 73.7 1.3e-20 1 CL0113
Cotton_A_23001_CDS 88 331 88 365 PF03141.16 Methyltransf_29 Family 1 246 506 332.1 5.1e-99 1 CL0063
Cotton_A_04569_CDS 178 340 173 340 PF02622.15 DUF179 Family 7 160 160 117.6 4.8e-34 1 No_clan
Cotton_A_10036_CDS 50 238 49 238 PF00033.19 Cytochrome_B Domain 2 189 189 276.8 8.5e-83 1 CL0328
Cotton_A_29484_CDS 1 206 1 206 PF00244.20 14-3-3 Domain 18 222 222 323.5 6.2e-97 1 No_clan
Cotton_A_19166_CDS 3 101 1 106 PF01154.17 HMG_CoA_synt_N Domain 3 101 174 128.8 1.9e-37 1 CL0046
Cotton_A_16430_CDS 32 248 32 248 PF00314.17 Thaumatin Domain 1 214 214 284.7 4.2e-85 1 CL0293
Cotton_A_15023_CDS 216 250 216 251 PF00320.27 GATA Domain 1 35 36 54.2 7.5e-15 1 CL0167
Cotton_A_26830_CDS 4 63 1 63 PF03006.20 HlyIII Family 38 98 224 58.3 8.9e-16 1 CL0192
Cotton_A_04938_CDS 118 192 118 192 PF08059.13 SEP Domain 1 76 76 98.1 3.2e-28 1 No_clan
Cotton_A_04938_CDS 229 303 225 304 PF00789.20 UBX Domain 5 80 81 49.3 4.1e-13 1 CL0072
Cotton_A_12553_CDS 83 168 74 170 PF14380.6 WAK_assoc Domain 13 101 104 57.7 1.6e-15 1 No_clan
Cotton_A_25714_CDS 58 223 52 223 PF02507.15 PSI_PsaF Family 7 172 172 269.3 1.3e-80 1 No_clan
Cotton_A_14447_CDS 327 369 326 369 PF13639.6 zf-RING_2 Domain 2 44 44 46.2 4.2e-12 1 CL0229
Cotton_A_00110_CDS 35 150 32 151 PF02996.17 Prefoldin Coiled-coil 4 119 120 101.2 3.4e-29 1 CL0200
Cotton_A_15803_CDS 70 138 70 138 PF00076.22 RRM_1 Domain 1 70 70 59.9 1.6e-16 1 CL0221
Cotton_A_25481_CDS 8 363 8 365 PF10186.9 Atg14 Family 1 317 319 222.4 7.7e-66 1 CL0551
Cotton_A_17074_CDS 114 228 114 228 PF03556.15 Cullin_binding Family 1 120 120 90.1 1.3e-25 1 CL0220
Cotton_A_01477_CDS 213 249 211 249 PF00400.32 WD40 Repeat 3 38 38 13.9 0.076 1 CL0186
Cotton_A_02252_CDS 50 255 48 255 PF00161.19 RIP Domain 3 196 196 90.3 1.2e-25 1 No_clan
Cotton_A_02252_CDS 342 456 339 456 PF00652.22 Ricin_B_lectin Domain 4 127 127 64.3 1.3e-17 1 CL0066
Cotton_A_02252_CDS 473 581 466 581 PF00652.22 Ricin_B_lectin Domain 10 127 127 55.1 8.8e-15 1 CL0066
Cotton_A_05382_CDS 5 136 1 139 PF03918.14 CcmH Family 16 140 143 107.1 4.4e-31 1 No_clan
Cotton_A_05596_CDS 31 276 29 276 PF00069.25 Pkinase Domain 3 264 264 234.5 1.3e-69 1 CL0016
Cotton_A_30187_CDS 26 66 25 67 PF08263.12 LRRNT_2 Family 2 40 41 33.6 3.5e-08 1 No_clan
Cotton_A_30187_CDS 100 122 100 122 PF00560.33 LRR_1 Repeat 1 23 23 10.4 0.85 1 CL0022
Cotton_A_30187_CDS 268 327 267 327 PF13855.6 LRR_8 Repeat 2 61 61 33.4 2.8e-08 1 CL0022
Cotton_A_30187_CDS 509 567 508 568 PF13855.6 LRR_8 Repeat 2 60 61 27.6 1.8e-06 1 CL0022
Cotton_A_30187_CDS 627 687 627 687 PF13855.6 LRR_8 Repeat 1 61 61 28.6 9e-07 1 CL0022
Cotton_A_30187_CDS 747 808 747 808 PF13855.6 LRR_8 Repeat 1 61 61 29.3 5.2e-07 1 CL0022
Cotton_A_30187_CDS 958 1234 953 1238 PF00069.25 Pkinase Domain 6 259 264 152.1 1.7e-44 1 CL0016
Cotton_A_00842_CDS 9 45 2 53 PF11960.8 DUF3474 Family 81 118 135 53.2 3.3e-14 1 No_clan
Cotton_A_00842_CDS 46 274 45 280 PF00487.24 FA_desaturase Domain 28 246 254 88.7 5.2e-25 1 No_clan
Cotton_A_24863_CDS 74 173 73 174 PF01453.24 B_lectin Domain 2 104 105 108.5 2.2e-31 1 No_clan
Cotton_A_06268_CDS 33 458 30 460 PF00450.22 Peptidase_S10 Domain 5 417 419 327.9 1.2e-97 1 CL0028
Cotton_A_29622_CDS 225 387 221 400 PF00852.19 Glyco_transf_10 Family 3 163 177 114.4 4.5e-33 1 CL0113
Cotton_A_16668_CDS 27 86 27 86 PF02704.14 GASA Family 1 60 60 82.1 2.4e-23 1 No_clan
Cotton_A_29465_CDS 48 258 30 259 PF01168.20 Ala_racemase_N Domain 12 218 219 79.5 2.8e-22 1 CL0036
Cotton_A_33079_CDS 201 359 201 360 PF01764.25 Lipase_3 Family 1 141 142 132.1 1.2e-38 1 CL0028
Cotton_A_35639_CDS 117 185 116 185 PF00288.26 GHMP_kinases_N Family 2 66 66 42.0 8e-11 1 CL0329
Cotton_A_35639_CDS 261 333 259 340 PF08544.13 GHMP_kinases_C Family 4 77 85 21.4 0.00023 1 CL0677
Cotton_A_17092_CDS 22 71 22 71 PF13041.6 PPR_2 Repeat 1 50 50 46.7 2.6e-12 1 CL0020
Cotton_A_17092_CDS 124 170 123 172 PF13041.6 PPR_2 Repeat 2 48 50 39.5 4.6e-10 1 CL0020
Cotton_A_17092_CDS 198 225 196 226 PF01535.20 PPR Family 3 30 31 24.1 2.7e-05 1 CL0020
Cotton_A_17092_CDS 227 257 227 257 PF01535.20 PPR Family 1 31 31 15.7 0.013 1 CL0020
Cotton_A_17092_CDS 333 381 333 382 PF13041.6 PPR_2 Repeat 1 49 50 35.6 7.9e-09 1 CL0020
Cotton_A_17092_CDS 408 428 407 428 PF01535.20 PPR Family 2 22 31 11.2 0.35 1 CL0020
Cotton_A_17092_CDS 474 502 473 503 PF01535.20 PPR Family 2 30 31 13.0 0.092 1 CL0020
Cotton_A_09326_CDS 9 42 9 43 PF08880.11 QLQ Domain 1 34 35 51.9 4.5e-14 1 No_clan
Cotton_A_09326_CDS 78 120 78 120 PF08879.10 WRC Domain 1 43 43 73.5 7.7e-21 1 No_clan
Cotton_A_31017_CDS 20 208 7 211 PF11145.8 DUF2921 Family 25 181 894 98.0 3.4e-28 1 No_clan
Cotton_A_29630_CDS 77 324 56 330 PF00481.21 PP2C Family 34 251 258 127.9 5e-37 1 CL0238
Cotton_A_30254_CDS 114 216 113 218 PF01040.18 UbiA Family 2 103 252 72.1 4.1e-20 1 CL0613
Cotton_A_30254_CDS 218 298 210 304 PF01040.18 UbiA Family 168 247 252 34.3 1.4e-08 1 CL0613
Cotton_A_01496_CDS 174 298 172 298 PF00134.23 Cyclin_N Domain 3 127 127 153.6 2.1e-45 1 CL0065
Cotton_A_01496_CDS 300 414 300 417 PF02984.19 Cyclin_C Domain 1 116 119 108.5 2.1e-31 1 CL0065
Cotton_A_26561_CDS 13 147 9 149 PF03208.19 PRA1 Family 5 139 143 153.1 3.6e-45 1 No_clan
Cotton_A_32808_CDS 61 114 59 115 PF00046.29 Homeodomain Domain 3 56 57 58.4 4.6e-16 1 CL0123
Cotton_A_19150_CDS 35 503 35 507 PF00067.22 p450 Domain 1 458 463 312.3 5.1e-93 1 No_clan
Cotton_A_33824_CDS 2 345 1 346 PF00344.20 SecY Family 42 305 306 211.8 1.4e-62 1 No_clan
Cotton_A_01410_CDS 1 101 1 102 PF01251.18 Ribosomal_S7e Family 38 133 184 64.2 1.3e-17 1 CL0652
Cotton_A_24299_CDS 24 114 21 125 PF00651.31 BTB Domain 6 98 111 39.9 4.2e-10 1 CL0033
Cotton_A_24299_CDS 184 438 184 439 PF03000.14 NPH3 Family 1 257 258 278.4 6.1e-83 1 No_clan
Cotton_A_28220_CDS 203 579 202 579 PF00368.18 HMG-CoA_red Family 2 367 367 485.4 1.1e-145 1 No_clan
Cotton_A_18556_CDS 44 163 43 167 PF01417.20 ENTH Domain 2 121 125 92.3 2.3e-26 1 CL0009
Cotton_A_29010_CDS 32 354 30 354 PF01263.20 Aldose_epim Family 3 301 301 303.7 1.3e-90 1 CL0103
Cotton_A_25539_CDS 14 107 7 108 PF02519.14 Auxin_inducible Family 8 89 90 83.3 1e-23 1 No_clan
Cotton_A_03556_CDS 111 491 110 491 PF00155.21 Aminotran_1_2 Domain 2 363 363 275.8 5.6e-82 1 CL0061
Cotton_A_25917_CDS 60 228 29 250 PF00083.24 Sugar_tr Family 44 216 452 116.5 1.4e-33 1 CL0015
Cotton_A_25917_CDS 346 476 341 493 PF07690.16 MFS_1 Family 43 174 353 40.5 1.5e-10 1 CL0015
Cotton_A_33770_CDS 24 170 11 189 PF12999.7 PRKCSH-like Family 13 162 176 129.9 8.3e-38 1 No_clan
Cotton_A_33770_CDS 488 645 487 646 PF13015.6 PRKCSH_1 Family 2 153 154 98.9 2.2e-28 1 CL0226
Cotton_A_20564_CDS 55 84 54 84 PF01535.20 PPR Family 2 31 31 10.4 0.62 1 CL0020
Cotton_A_20564_CDS 254 302 253 302 PF13041.6 PPR_2 Repeat 2 50 50 39.3 5.4e-10 1 CL0020
Cotton_A_20564_CDS 329 356 329 356 PF01535.20 PPR Family 4 31 31 13.4 0.068 1 CL0020
Cotton_A_20564_CDS 357 385 357 387 PF01535.20 PPR Family 1 29 31 17.7 0.0029 1 CL0020
Cotton_A_20564_CDS 527 649 524 649 PF14432.6 DYW_deaminase Family 4 127 127 103.9 5.4e-30 1 CL0109
Cotton_A_21030_CDS 44 86 42 88 PF00646.33 F-box Domain 3 45 48 26.1 5.7e-06 1 CL0271
Cotton_A_04233_CDS 35 139 33 153 PF00501.28 AMP-binding Family 3 109 423 78.0 5.3e-22 1 CL0378
Cotton_A_04233_CDS 163 326 155 328 PF00501.28 AMP-binding Family 225 395 423 125.4 2.2e-36 1 CL0378
Cotton_A_04233_CDS 331 406 331 406 PF13193.6 AMP-binding_C Domain 1 76 76 28.5 2.3e-06 1 CL0531
Cotton_A_05265_CDS 123 172 122 173 PF00847.20 AP2 Domain 2 53 54 46.1 4.1e-12 1 CL0081
Cotton_A_04341_CDS 85 483 80 486 PF00202.21 Aminotran_3 Domain 10 403 406 306.0 3.2e-91 1 CL0061
Cotton_A_14627_CDS 136 845 108 848 PF04615.13 Utp14 Family 6 741 756 574.2 5.3e-172 1 No_clan
Cotton_A_12132_CDS 1 78 1 82 PF13456.6 RVT_3 Domain 42 120 124 46.2 3.5e-12 1 CL0219
Cotton_A_04932_CDS 18 122 18 122 PF09298.11 FAA_hydrolase_N Domain 1 107 107 116.8 4.8e-34 1 No_clan
Cotton_A_04932_CDS 128 415 127 416 PF01557.18 FAA_hydrolase Family 3 217 218 193.8 3e-57 1 CL0377
Cotton_A_19278_CDS 59 170 59 173 PF00072.24 Response_reg Domain 1 109 112 73.6 1.3e-20 1 CL0304
Cotton_A_19278_CDS 565 607 565 608 PF06203.14 CCT Motif 1 43 44 59.8 2e-16 1 CL0281
Cotton_A_07705_CDS 300 345 297 345 PF00010.26 HLH Domain 5 53 53 52.0 5e-14 1 No_clan
Cotton_A_01064_CDS 113 212 106 215 PF02341.15 RcbX Family 10 108 111 67.8 8.6e-19 1 No_clan
Cotton_A_02596_CDS 16 71 15 71 PF00046.29 Homeodomain Domain 2 57 57 56.8 1.5e-15 1 CL0123
Cotton_A_09103_CDS 56 115 56 116 PF02148.19 zf-UBP Domain 1 63 64 35.5 9.5e-09 1 CL0229
Cotton_A_09103_CDS 170 501 170 501 PF00443.29 UCH Family 1 257 257 183.3 5.9e-54 1 CL0125
Cotton_A_12938_CDS 34 113 34 116 PF07011.11 Elf4 Domain 1 80 83 124.9 8.9e-37 1 No_clan
Cotton_A_10625_CDS 15 124 14 124 PF16457.5 PH_12 Domain 3 134 134 37.5 3e-09 1 CL0266
Cotton_A_10625_CDS 235 283 234 283 PF00415.18 RCC1 Repeat 2 50 50 25.1 2e-05 1 CL0186
Cotton_A_10625_CDS 287 337 286 338 PF00415.18 RCC1 Repeat 2 49 50 37.1 3.5e-09 1 CL0186
Cotton_A_10625_CDS 341 390 341 390 PF00415.18 RCC1 Repeat 1 50 50 53.2 3.4e-14 1 CL0186
Cotton_A_10625_CDS 406 452 405 452 PF00415.18 RCC1 Repeat 4 50 50 37.4 2.8e-09 1 CL0186
Cotton_A_10625_CDS 455 504 455 504 PF00415.18 RCC1 Repeat 1 50 50 28.4 1.9e-06 1 CL0186
Cotton_A_10625_CDS 509 553 508 556 PF00415.18 RCC1 Repeat 3 47 50 48.3 1.2e-12 1 CL0186
Cotton_A_10625_CDS 560 626 559 627 PF01363.21 FYVE Domain 2 67 68 49.2 4.2e-13 1 CL0390
Cotton_A_10625_CDS 820 852 819 855 PF13713.6 BRX_N Domain 2 34 37 31.3 1.3e-07 1 No_clan
Cotton_A_10625_CDS 907 962 907 962 PF08381.11 BRX Domain 1 56 56 80.7 3.6e-23 1 No_clan
Cotton_A_12865_CDS 23 438 23 439 PF00909.21 Ammonium_transp Family 1 398 399 275.9 4.5e-82 1 No_clan
Cotton_A_21891_CDS 6 274 3 277 PF03059.16 NAS Family 6 273 276 435.1 9.7e-131 1 CL0063
Cotton_A_06136_CDS 36 172 36 173 PF00179.26 UQ_con Domain 1 139 140 176.9 1.6e-52 1 CL0208
Cotton_A_32564_CDS 348 609 345 612 PF07714.17 Pkinase_Tyr Domain 4 256 259 165.0 1.9e-48 1 CL0016
Cotton_A_01012_CDS 67 182 48 204 PF00149.28 Metallophos Domain 84 174 204 27.3 4.5e-06 1 CL0163
Cotton_A_18479_CDS 57 98 56 98 PF03790.13 KNOX1 Family 2 43 43 71.2 4.1e-20 1 No_clan
Cotton_A_18479_CDS 107 153 106 153 PF03791.13 KNOX2 Family 2 48 48 87.8 2.3e-25 1 No_clan
Cotton_A_18479_CDS 186 206 185 206 PF03789.13 ELK Domain 2 22 22 33.1 4e-08 1 No_clan
Cotton_A_18479_CDS 225 264 225 264 PF05920.11 Homeobox_KN Family 1 40 40 60.4 1.1e-16 1 CL0123
Cotton_A_21775_CDS 13 99 5 107 PF02519.14 Auxin_inducible Family 2 80 90 85.7 1.8e-24 1 No_clan
Cotton_A_15406_CDS 227 285 227 285 PF02176.18 zf-TRAF Family 1 60 60 40.0 4.9e-10 1 CL0389
Cotton_A_29291_CDS 49 280 43 280 PF00481.21 PP2C Family 10 258 258 182.8 9e-54 1 CL0238
Cotton_A_12817_CDS 134 166 134 167 PF13181.6 TPR_8 Repeat 1 33 34 13.9 0.047 1 CL0020
Cotton_A_12817_CDS 168 199 168 199 PF00515.28 TPR_1 Repeat 1 32 34 39.0 4.1e-10 1 CL0020
Cotton_A_12817_CDS 246 284 244 284 PF13414.6 TPR_11 Repeat 4 42 42 42.1 5e-11 1 CL0020
Cotton_A_12817_CDS 292 324 292 324 PF13431.6 TPR_17 Repeat 1 33 34 25.7 9.1e-06 1 CL0020
Cotton_A_12817_CDS 339 371 338 371 PF00515.28 TPR_1 Repeat 2 34 34 37.8 1e-09 1 CL0020
Cotton_A_12817_CDS 409 437 407 437 PF00515.28 TPR_1 Repeat 4 32 34 33.1 3e-08 1 CL0020
Cotton_A_12817_CDS 447 488 447 488 PF13414.6 TPR_11 Repeat 1 42 42 38.7 5.6e-10 1 CL0020
Cotton_A_12817_CDS 605 759 605 765 PF13844.6 Glyco_transf_41 Family 1 156 471 246.0 5.5e-73 1 CL0113
Cotton_A_12817_CDS 770 965 761 965 PF13844.6 Glyco_transf_41 Family 277 471 471 252.0 8.2e-75 1 CL0113
Cotton_A_08828_CDS 120 271 120 275 PF15346.6 ARGLU Family 1 147 151 121.0 3.9e-35 1 No_clan
Cotton_A_30156_CDS 25 510 23 513 PF00083.24 Sugar_tr Family 3 448 452 172.9 1.1e-50 1 CL0015
Cotton_A_36265_CDS 21 214 20 220 PF00069.25 Pkinase Domain 2 187 264 136.5 1e-39 1 CL0016
Cotton_A_01755_CDS 8 30 8 30 PF10584.9 Proteasome_A_N Domain 1 23 23 50.2 1.4e-13 1 CL0052
Cotton_A_01755_CDS 32 216 31 216 PF00227.26 Proteasome Domain 2 190 190 176.5 3.9e-52 1 CL0052
Cotton_A_22527_CDS 15 68 14 70 PF06825.12 HSBP1 Coiled-coil 2 49 51 58.5 4.3e-16 1 No_clan
Cotton_A_01406_CDS 117 461 116 461 PF03372.23 Exo_endo_phos Domain 2 233 233 75.6 4e-21 1 CL0530
Cotton_A_17949_CDS 12 115 1 116 PF00134.23 Cyclin_N Domain 23 126 127 50.2 2e-13 1 CL0065
Cotton_A_17949_CDS 118 216 118 233 PF02984.19 Cyclin_C Domain 1 92 119 44.8 1.2e-11 1 CL0065
Cotton_A_03083_CDS 20 153 19 156 PF05903.14 Peptidase_C97 Domain 2 148 151 142.7 7.4e-42 1 CL0125
Cotton_A_28244_CDS 60 201 39 206 PF05176.14 ATP-synt_10 Family 46 176 257 40.4 2e-10 1 No_clan
Cotton_A_37558_CDS 226 401 223 401 PF07466.11 DUF1517 Family 9 184 184 209.5 4.5e-62 1 No_clan
Cotton_A_25220_CDS 81 299 75 303 PF03767.14 Acid_phosphat_B Family 8 226 230 80.2 1.7e-22 1 CL0137
Cotton_A_24303_CDS 189 628 189 628 PF12899.7 Glyco_hydro_100 Domain 1 435 435 711.7 2.9e-214 1 CL0059
Cotton_A_11008_CDS 61 183 60 185 PF10374.9 EST1 Family 2 134 136 64.8 1.2e-17 1 CL0020
Cotton_A_11008_CDS 197 531 197 532 PF10373.9 EST1_DNA_bind Family 1 281 282 241.1 1.5e-71 1 CL0020
Cotton_A_34443_CDS 13 95 10 117 PF18052.1 Rx_N Domain 5 87 93 84.3 5.4e-24 1 No_clan
Cotton_A_34443_CDS 169 411 168 411 PF00931.22 NB-ARC Domain 2 252 252 166.1 7.7e-49 1 CL0023
Cotton_A_09609_CDS 12 142 12 153 PF04857.20 CAF1 Family 1 126 319 38.6 6.9e-10 1 CL0219
Cotton_A_11339_CDS 146 210 146 210 PF00333.20 Ribosomal_S5 Domain 1 65 65 83.8 6.1e-24 1 CL0196
Cotton_A_11339_CDS 223 293 222 293 PF03719.15 Ribosomal_S5_C Domain 2 72 72 86.8 4.8e-25 1 CL0329
Cotton_A_05684_CDS 27 67 26 67 PF08263.12 LRRNT_2 Family 2 41 41 38.9 7.6e-10 1 No_clan
Cotton_A_05684_CDS 119 178 117 178 PF13855.6 LRR_8 Repeat 3 61 61 34.8 1e-08 1 CL0022
Cotton_A_05684_CDS 192 212 191 212 PF00560.33 LRR_1 Repeat 3 23 23 10.8 0.64 1 CL0022
Cotton_A_05684_CDS 366 448 363 450 PF07714.17 Pkinase_Tyr Domain 5 93 259 30.4 2.3e-07 1 CL0016
Cotton_A_31671_CDS 34 397 34 398 PF12819.7 Malectin_like Domain 1 335 336 145.3 2.4e-42 1 CL0202
Cotton_A_31671_CDS 497 764 496 767 PF00069.25 Pkinase Domain 2 259 264 151.3 3.2e-44 1 CL0016
Cotton_A_28467_CDS 101 281 100 291 PF00160.21 Pro_isomerase Domain 2 147 158 51.1 1.8e-13 1 CL0475
Cotton_A_12579_CDS 2 96 2 103 PF06418.14 CTP_synth_N Domain 1 95 265 171.0 3e-50 1 CL0023
Cotton_A_12579_CDS 111 289 105 289 PF06418.14 CTP_synth_N Domain 93 265 265 221.9 8.9e-66 1 CL0023
Cotton_A_12579_CDS 326 560 325 562 PF00117.28 GATase Domain 2 188 190 183.4 3.6e-54 1 CL0014
Cotton_A_13187_CDS 24 83 23 84 PF02953.15 zf-Tim10_DDP Domain 2 62 64 73.5 7.8e-21 1 No_clan
Cotton_A_29946_CDS 561 648 561 649 PF00855.17 PWWP Domain 1 95 96 63.0 2.5e-17 1 CL0049
Cotton_A_04385_CDS 5 165 3 165 PF07468.11 Agglutinin Domain 3 153 153 87.4 1.1e-24 1 CL0066
Cotton_A_04385_CDS 175 335 173 335 PF07468.11 Agglutinin Domain 3 153 153 81.6 6.5e-23 1 CL0066
Cotton_A_04385_CDS 346 490 344 490 PF07468.11 Agglutinin Domain 3 153 153 66.1 4e-18 1 CL0066
Cotton_A_04385_CDS 500 624 495 630 PF07468.11 Agglutinin Domain 7 145 153 60.8 1.6e-16 1 CL0066
Cotton_A_04385_CDS 667 762 613 801 PF03318.13 ETX_MTX2 Family 44 140 228 22.5 8.1e-05 1 CL0345
Cotton_A_16145_CDS 222 280 222 281 PF00462.24 Glutaredoxin Domain 1 59 60 36.3 4.8e-09 1 CL0172
Cotton_A_16145_CDS 343 410 342 410 PF00610.21 DEP Domain 2 72 72 63.5 1.4e-17 1 CL0123
Cotton_A_16145_CDS 489 616 488 616 PF04784.14 DUF547 Family 2 123 123 129.3 7.5e-38 1 No_clan
Cotton_A_39753_CDS 28 352 28 353 PF00657.22 Lipase_GDSL Family 1 199 200 38.3 1.3e-09 1 CL0264
Cotton_A_39061_CDS 414 669 413 669 PF00069.25 Pkinase Domain 2 264 264 236.4 3.5e-70 1 CL0016
Cotton_A_37000_CDS 27 62 25 63 PF08263.12 LRRNT_2 Family 3 40 41 25.6 1.1e-05 1 No_clan
Cotton_A_37000_CDS 185 207 185 207 PF00560.33 LRR_1 Repeat 1 23 23 12.6 0.16 1 CL0022
Cotton_A_37000_CDS 342 604 339 607 PF00069.25 Pkinase Domain 4 259 264 125.6 2.1e-36 1 CL0016
Cotton_A_37713_CDS 59 133 23 174 PF12999.7 PRKCSH-like Family 49 124 176 102.2 2.7e-29 1 No_clan
Cotton_A_32723_CDS 482 515 481 516 PF08880.11 QLQ Domain 2 34 35 32.5 5.3e-08 1 No_clan
Cotton_A_32723_CDS 1019 1314 1006 1316 PF00176.23 SNF2_N Family 50 348 350 220.4 2.7e-65 1 CL0023
Cotton_A_32723_CDS 1336 1447 1333 1447 PF00271.31 Helicase_C Family 4 111 111 60.1 2.3e-16 1 CL0023
Cotton_A_06114_CDS 154 182 154 184 PF02985.22 HEAT Repeat 1 29 31 21.9 0.00014 1 CL0020
Cotton_A_39141_CDS 123 427 122 427 PF00069.25 Pkinase Domain 2 264 264 220.8 1.9e-65 1 CL0016
Cotton_A_39141_CDS 446 490 446 490 PF00433.24 Pkinase_C Family 1 46 46 27.7 3.2e-06 1 No_clan
Cotton_A_19526_CDS 58 122 41 122 PF01388.21 ARID Domain 21 90 90 28.4 1.9e-06 1 CL0123
Cotton_A_12233_CDS 1 85 1 133 PF14009.6 DUF4228 Family 1 95 179 64.2 2e-17 1 No_clan
Cotton_A_08971_CDS 176 338 170 341 PF17177.4 PPR_long Domain 29 200 212 29.4 4.6e-07 1 CL0020
Cotton_A_08971_CDS 456 485 456 485 PF01535.20 PPR Family 2 31 31 24.4 2.1e-05 1 CL0020
Cotton_A_08971_CDS 492 536 489 536 PF13041.6 PPR_2 Repeat 6 50 50 41.6 1.1e-10 1 CL0020
Cotton_A_08971_CDS 595 624 595 625 PF01535.20 PPR Family 1 30 31 14.8 0.026 1 CL0020
Cotton_A_08971_CDS 627 676 627 676 PF13041.6 PPR_2 Repeat 1 50 50 58.7 4.7e-16 1 CL0020
Cotton_A_08971_CDS 698 746 697 746 PF13041.6 PPR_2 Repeat 2 50 50 53.8 1.6e-14 1 CL0020
Cotton_A_18384_CDS 3 76 3 76 PF08783.11 DWNN Domain 1 74 74 106.9 4.6e-31 1 CL0072
Cotton_A_20878_CDS 66 231 65 232 PF00504.21 Chloroa_b-bind Family 2 160 161 172.1 1.3e-50 1 No_clan
Cotton_A_26063_CDS 123 297 82 301 PF07228.12 SpoIIE Family 40 189 193 25.4 1.1e-05 1 CL0238
Cotton_A_06844_CDS 6 28 6 28 PF10584.9 Proteasome_A_N Domain 1 23 23 52.3 3.2e-14 1 CL0052
Cotton_A_06844_CDS 29 214 29 214 PF00227.26 Proteasome Domain 1 190 190 200.3 1.9e-59 1 CL0052
Cotton_A_27555_CDS 1 103 1 104 PF12014.8 DUF3506 Family 23 138 139 58.9 5.1e-16 1 No_clan
Cotton_A_35960_CDS 183 229 181 229 PF00010.26 HLH Domain 4 53 53 39.1 5.5e-10 1 No_clan
Cotton_A_16729_CDS 31 147 31 147 PF00188.26 CAP Domain 1 126 126 79.2 4.6e-22 1 CL0659
Cotton_A_17067_CDS 182 204 180 204 PF13516.6 LRR_6 Repeat 3 24 24 10.8 0.42 1 CL0022
Cotton_A_14106_CDS 112 134 111 140 PF00023.30 Ank Repeat 2 24 32 23.5 5.2e-05 1 CL0465
Cotton_A_14106_CDS 165 188 163 191 PF13606.6 Ank_3 Repeat 3 28 31 19.0 0.0013 1 CL0465
Cotton_A_14106_CDS 215 290 212 297 PF12796.7 Ank_2 Repeat 12 75 83 43.2 4.6e-11 1 CL0465
Cotton_A_14106_CDS 433 548 431 549 PF13962.6 PGG Domain 3 115 116 86.4 1.1e-24 1 No_clan
Cotton_A_09591_CDS 2 38 1 42 PF12937.7 F-box-like Domain 2 37 48 26.6 4e-06 1 CL0271
Cotton_A_07905_CDS 4 95 2 98 PF00153.27 Mito_carr Family 5 94 97 61.8 4.3e-17 1 No_clan
Cotton_A_07905_CDS 102 200 100 202 PF00153.27 Mito_carr Family 3 94 97 74.5 4.7e-21 1 No_clan
Cotton_A_07905_CDS 214 295 207 297 PF00153.27 Mito_carr Family 9 92 97 68.8 2.8e-19 1 No_clan
Cotton_A_28524_CDS 12 38 12 39 PF05678.14 VQ Motif 1 27 28 46.1 2.3e-12 1 No_clan
Cotton_A_07742_CDS 111 223 111 224 PF03479.15 DUF296 Domain 1 106 107 106.4 9.3e-31 1 CL0615
Cotton_A_09651_CDS 273 628 272 629 PF03081.15 Exo70 Family 2 375 376 361.5 4.9e-108 1 CL0295
Cotton_A_20186_CDS 110 236 89 267 PF16913.5 PUNUT Family 64 184 322 32.5 5.1e-08 1 CL0184
Cotton_A_24393_CDS 1 188 1 190 PF07279.11 DUF1442 Family 3 190 218 264.3 6.5e-79 1 CL0063
Cotton_A_22341_CDS 54 70 45 71 PF14383.6 VARLMGL Domain 14 30 32 27.7 1.4e-06 1 No_clan
Cotton_A_03377_CDS 8 74 2 74 PF05922.16 Inhibitor_I9 Domain 21 82 82 32.4 1.1e-07 1 CL0570
Cotton_A_03377_CDS 98 566 97 566 PF00082.22 Peptidase_S8 Domain 2 298 298 191.7 1.7e-56 1 No_clan
Cotton_A_03377_CDS 349 419 331 420 PF02225.22 PA Family 20 88 89 33.7 2.7e-08 1 CL0364
Cotton_A_03377_CDS 622 723 622 723 PF17766.1 fn3_6 Domain 1 99 99 83.8 7.3e-24 1 CL0159
Cotton_A_01995_CDS 59 122 58 122 PF00226.31 DnaJ Domain 2 63 63 70.0 1.3e-19 1 CL0392
Cotton_A_15153_CDS 75 589 75 589 PF10433.9 MMS1_N Domain 1 489 489 569.7 4.7e-171 1 No_clan
Cotton_A_15153_CDS 861 1180 860 1182 PF03178.15 CPSF_A Family 2 320 322 317.0 1.5e-94 1 CL0186
Cotton_A_22151_CDS 43 80 42 90 PF03087.14 DUF241 Family 2 38 234 36.7 3.9e-09 1 CL0133
Cotton_A_03729_CDS 90 363 89 364 PF00483.23 NTP_transferase Family 2 247 248 227.5 1.9e-67 1 CL0110
Cotton_A_09232_CDS 1 407 1 408 PF00067.22 p450 Domain 54 462 463 296.0 4.6e-88 1 No_clan
Cotton_A_29080_CDS 15 105 13 105 PF13650.6 Asp_protease_2 Domain 3 90 90 27.2 4.7e-06 1 CL0129
Cotton_A_36743_CDS 42 116 42 150 PF14226.6 DIOX_N Family 1 70 118 45.7 9.7e-12 1 CL0029
Cotton_A_36743_CDS 197 291 191 292 PF03171.20 2OG-FeII_Oxy Domain 7 100 101 67.8 9.5e-19 1 CL0029
Cotton_A_35131_CDS 39 361 38 361 PF03492.15 Methyltransf_7 Family 2 334 334 385.7 1.9e-115 1 CL0063
Cotton_A_07738_CDS 109 223 109 225 PF03479.15 DUF296 Domain 1 105 107 97.7 4.6e-28 1 CL0615
Cotton_A_25619_CDS 44 146 39 147 PF13947.6 GUB_WAK_bind Domain 5 105 106 40.6 3.5e-10 1 No_clan
Cotton_A_25619_CDS 174 246 155 247 PF14380.6 WAK_assoc Domain 22 103 104 56.5 3.9e-15 1 No_clan
Cotton_A_25619_CDS 334 603 333 605 PF00069.25 Pkinase Domain 2 260 264 170.1 6e-50 1 CL0016
Cotton_A_00661_CDS 27 254 26 255 PF01048.20 PNP_UDP_1 Domain 2 233 234 79.0 3.1e-22 1 CL0408
Cotton_A_33505_CDS 89 161 87 161 PF00364.22 Biotin_lipoyl Domain 3 73 73 67.8 5.5e-19 1 CL0105
Cotton_A_33505_CDS 215 286 213 287 PF00364.22 Biotin_lipoyl Domain 3 72 73 68.7 2.8e-19 1 CL0105
Cotton_A_33505_CDS 330 364 329 364 PF02817.17 E3_binding Family 2 36 36 36.4 4.8e-09 1 No_clan
Cotton_A_33505_CDS 409 638 406 639 PF00198.23 2-oxoacid_dh Domain 4 232 233 248.3 6.6e-74 1 CL0149
Cotton_A_02320_CDS 81 275 81 275 PF06102.12 RRP36 Family 1 166 166 145.6 1.3e-42 1 No_clan
Cotton_A_33972_CDS 30 287 29 287 PF00704.28 Glyco_hydro_18 Domain 2 312 312 88.9 5e-25 1 CL0058
Cotton_A_34926_CDS 99 377 99 379 PF01490.18 Aa_trans Family 1 283 409 181.2 2.6e-53 1 CL0062
Cotton_A_33652_CDS 554 684 554 685 PF00004.29 AAA Domain 1 131 132 130.8 4.1e-38 1 CL0023
Cotton_A_33652_CDS 708 750 707 751 PF17862.1 AAA_lid_3 Domain 2 44 45 41.0 1.2e-10 1 CL0671
Cotton_A_13114_CDS 47 163 46 163 PF08510.12 PIG-P Family 2 121 121 121.4 1.9e-35 1 No_clan
Cotton_A_14852_CDS 195 249 195 249 PF00887.19 ACBP Domain 1 58 85 38.8 8.1e-10 1 CL0632
Cotton_A_22091_CDS 21 70 19 76 PF00076.22 RRM_1 Domain 3 55 70 37.4 1.6e-09 1 CL0221
Cotton_A_22091_CDS 104 175 89 213 PF13893.6 RRM_5 Domain 21 89 125 18.5 0.0011 1 CL0221
Cotton_A_22091_CDS 230 326 218 340 PF13893.6 RRM_5 Domain 14 105 125 25.5 7.8e-06 1 CL0221
Cotton_A_00456_CDS 131 260 129 261 PF17207.3 MCM_OB Domain 2 125 126 95.7 1.7e-27 1 CL0021
Cotton_A_00456_CDS 334 548 322 548 PF00493.23 MCM Domain 11 224 224 304.4 3.3e-91 1 CL0023
Cotton_A_00456_CDS 603 686 602 686 PF17855.1 MCM_lid Domain 2 87 87 97.3 5.2e-28 1 CL0671
Cotton_A_32686_CDS 44 80 43 83 PF01281.19 Ribosomal_L9_N Domain 2 38 47 49.1 2.9e-13 1 No_clan
Cotton_A_34606_CDS 123 171 122 171 PF13041.6 PPR_2 Repeat 2 50 50 32.0 1e-07 1 CL0020
Cotton_A_34606_CDS 224 270 223 272 PF13041.6 PPR_2 Repeat 2 48 50 31.2 1.8e-07 1 CL0020
Cotton_A_34606_CDS 289 334 289 338 PF13041.6 PPR_2 Repeat 1 46 50 34.2 2.1e-08 1 CL0020
Cotton_A_34606_CDS 390 438 390 439 PF13041.6 PPR_2 Repeat 1 49 50 50.4 1.9e-13 1 CL0020
Cotton_A_34606_CDS 464 491 463 493 PF01535.20 PPR Family 2 29 31 9.9 0.89 1 CL0020
Cotton_A_34606_CDS 492 539 491 540 PF13041.6 PPR_2 Repeat 2 49 50 30.4 3.3e-07 1 CL0020
Cotton_A_34606_CDS 567 591 567 594 PF01535.20 PPR Family 4 28 31 11.7 0.25 1 CL0020
Cotton_A_34606_CDS 593 638 592 640 PF13041.6 PPR_2 Repeat 2 48 50 36.5 4e-09 1 CL0020
Cotton_A_34606_CDS 695 742 694 743 PF13041.6 PPR_2 Repeat 2 49 50 31.7 1.3e-07 1 CL0020
Cotton_A_34606_CDS 770 795 768 796 PF01535.20 PPR Family 4 29 31 14.5 0.031 1 CL0020
Cotton_A_34606_CDS 798 844 796 845 PF13041.6 PPR_2 Repeat 3 49 50 36.7 3.5e-09 1 CL0020
Cotton_A_31800_CDS 822 865 820 868 PF13920.6 zf-C3HC4_3 Domain 3 45 50 35.7 5.6e-09 1 CL0229
Cotton_A_30175_CDS 71 151 66 166 PF01397.21 Terpene_synth Domain 92 175 192 104.5 5.6e-30 1 No_clan
Cotton_A_16262_CDS 994 1139 980 1140 PF10377.9 ATG11 Family 11 128 129 71.0 9.1e-20 1 No_clan
Cotton_A_11504_CDS 56 128 55 133 PF02990.16 EMP70 Family 2 74 519 58.4 5.1e-16 1 No_clan
Cotton_A_35251_CDS 91 372 91 372 PF06472.15 ABC_membrane_2 Family 1 269 269 267.9 9.1e-80 1 CL0241
Cotton_A_35251_CDS 477 622 476 622 PF00005.27 ABC_tran Domain 2 137 137 68.2 1e-18 1 CL0023
Cotton_A_35251_CDS 760 1032 760 1035 PF06472.15 ABC_membrane_2 Family 1 266 269 252.6 4.4e-75 1 CL0241
Cotton_A_35251_CDS 1140 1305 1138 1305 PF00005.27 ABC_tran Domain 3 137 137 54.7 1.5e-14 1 CL0023
Cotton_A_28990_CDS 9 66 2 67 PF00067.22 p450 Domain 380 436 463 27.2 1.5e-06 1 No_clan
Cotton_A_02987_CDS 40 292 14 293 PF02309.16 AUX_IAA Family 3 236 237 201.1 2.4e-59 1 CL0072
Cotton_A_27035_CDS 106 317 105 317 PF01823.19 MACPF Domain 2 209 209 132.4 2.3e-38 1 CL0293
Cotton_A_10967_CDS 118 296 114 299 PF00574.23 CLP_protease Domain 11 178 182 136.1 1.2e-39 1 CL0127
Cotton_A_10979_CDS 14 175 14 177 PF00071.22 Ras Domain 1 160 162 50.8 1.4e-13 1 CL0023
Cotton_A_10979_CDS 229 314 228 315 PF08356.12 EF_assoc_2 Family 2 86 87 105.4 1.1e-30 1 CL0220
Cotton_A_10979_CDS 351 419 351 419 PF08355.12 EF_assoc_1 Family 1 75 75 69.0 2e-19 1 No_clan
Cotton_A_01387_CDS 56 333 56 334 PF04674.12 Phi_1 Family 1 275 276 339.0 1.9e-101 1 No_clan
Cotton_A_16577_CDS 45 108 44 108 PF05617.11 Prolamin_like Domain 2 71 71 47.5 1.5e-12 1 CL0482
Cotton_A_24801_CDS 15 74 14 74 PF13855.6 LRR_8 Repeat 2 61 61 37.3 1.7e-09 1 CL0022
Cotton_A_28740_CDS 24 107 22 109 PF00564.24 PB1 Domain 3 82 84 66.6 1.3e-18 1 CL0072
Cotton_A_20998_CDS 168 336 150 346 PF00201.18 UDPGT Family 263 409 499 71.7 5.3e-20 1 CL0113
Cotton_A_04749_CDS 128 234 127 235 PF01852.19 START Domain 96 208 209 76.8 1.5e-21 1 CL0209
Cotton_A_17464_CDS 487 752 483 753 PF07714.17 Pkinase_Tyr Domain 5 258 259 139.4 1.2e-40 1 CL0016
Cotton_A_20911_CDS 80 133 80 133 PF14416.6 PMR5N Domain 1 53 53 79.3 1.9e-22 1 No_clan
Cotton_A_20911_CDS 134 425 134 425 PF13839.6 PC-Esterase Family 1 283 283 303.0 2.6e-90 1 CL0264
Cotton_A_37409_CDS 10 88 9 124 PF14226.6 DIOX_N Family 2 77 118 44.4 2.5e-11 1 CL0029
Cotton_A_37409_CDS 166 260 163 263 PF03171.20 2OG-FeII_Oxy Domain 4 98 101 43.2 4.2e-11 1 CL0029
Cotton_A_36998_CDS 36 403 36 403 PF12819.7 Malectin_like Domain 1 336 336 147.2 6.5e-43 1 CL0202
Cotton_A_36998_CDS 536 799 532 802 PF07714.17 Pkinase_Tyr Domain 6 256 259 167.7 2.9e-49 1 CL0016
Cotton_A_08307_CDS 47 217 45 218 PF01595.20 DUF21 Domain 3 175 176 125.8 1.5e-36 1 No_clan
Cotton_A_38291_CDS 1 126 1 130 PF00421.19 PSII Family 344 502 507 106.8 1.1e-30 1 No_clan
Cotton_A_36496_CDS 57 79 57 79 PF00096.26 zf-C2H2 Domain 1 23 23 17.6 0.0038 1 CL0361
Cotton_A_09963_CDS 33 110 33 110 PF05922.16 Inhibitor_I9 Domain 1 82 82 50.7 2.1e-13 1 CL0570
Cotton_A_09963_CDS 132 580 130 580 PF00082.22 Peptidase_S8 Domain 3 298 298 162.4 1.4e-47 1 No_clan
Cotton_A_09963_CDS 636 736 636 736 PF17766.1 fn3_6 Domain 1 99 99 93.4 7.4e-27 1 CL0159
Cotton_A_30830_CDS 111 230 101 366 PF01697.27 Glyco_transf_92 Domain 16 124 260 22.0 0.00011 1 CL0110
Cotton_A_24156_CDS 49 194 43 194 PF00005.27 ABC_tran Domain 7 137 137 92.3 3.6e-26 1 CL0023
Cotton_A_24156_CDS 346 557 345 557 PF01061.24 ABC2_membrane Family 2 210 210 120.1 8.5e-35 1 CL0181
Cotton_A_26229_CDS 99 242 98 243 PF00210.24 Ferritin Domain 2 141 142 85.6 3e-24 1 CL0044
Cotton_A_12614_CDS 12 132 11 134 PF01124.18 MAPEG Family 2 128 130 80.7 8.2e-23 1 No_clan
Cotton_A_20810_CDS 1 101 1 103 PF07714.17 Pkinase_Tyr Domain 172 257 259 36.1 4.2e-09 1 CL0016
Cotton_A_20810_CDS 175 269 174 270 PF01657.17 Stress-antifung Family 2 94 95 59.8 3e-16 1 No_clan
Cotton_A_16682_CDS 3 80 2 81 PF00572.18 Ribosomal_L13 Family 47 124 125 61.7 8e-17 1 No_clan
Cotton_A_00517_CDS 3 101 3 101 PF17800.1 NPL Domain 1 105 105 60.8 1.5e-16 1 CL0055
Cotton_A_31487_CDS 87 241 87 241 PF04715.13 Anth_synt_I_N Family 1 142 142 99.2 2.4e-28 1 No_clan
Cotton_A_31487_CDS 302 573 301 573 PF00425.18 Chorismate_bind Family 2 258 258 283.1 2.2e-84 1 No_clan
Cotton_A_01900_CDS 346 476 344 477 PF13892.6 DBINO Domain 3 133 134 164.6 1.5e-48 1 CL0023
Cotton_A_01900_CDS 594 886 560 887 PF00176.23 SNF2_N Family 46 349 350 228.1 1.2e-67 1 CL0023
Cotton_A_01900_CDS 1208 1317 1204 1317 PF00271.31 Helicase_C Family 5 111 111 61.1 1.2e-16 1 CL0023
Cotton_A_08081_CDS 111 160 110 161 PF00847.20 AP2 Domain 2 53 54 47.4 1.7e-12 1 CL0081
Cotton_A_36009_CDS 114 272 113 276 PF01764.25 Lipase_3 Family 2 137 142 114.4 3.7e-33 1 CL0028
Cotton_A_23281_CDS 207 274 205 277 PF00364.22 Biotin_lipoyl Domain 3 68 73 81.5 2.8e-23 1 CL0105
Cotton_A_12696_CDS 31 282 30 308 PF09423.10 PhoD Domain 2 281 350 56.6 2.1e-15 1 CL0163
Cotton_A_30553_CDS 565 655 564 655 PF04576.15 Zein-binding Family 2 92 92 107.5 3.1e-31 1 No_clan
Cotton_A_23039_CDS 142 420 139 421 PF01733.18 Nucleoside_tran Family 4 308 309 252.8 4.9e-75 1 CL0015
Cotton_A_01049_CDS 48 103 48 104 PF00046.29 Homeodomain Domain 1 56 57 63.0 1.7e-17 1 CL0123
Cotton_A_01049_CDS 232 451 231 451 PF01852.19 START Domain 2 209 209 192.6 5.2e-57 1 CL0209
Cotton_A_09617_CDS 128 410 126 411 PF05291.11 Bystin Family 3 291 292 433.1 4.8e-130 1 No_clan
Cotton_A_33139_CDS 38 105 38 110 PF13450.6 NAD_binding_8 Domain 1 60 68 39.3 5.5e-10 1 CL0063
Cotton_A_33139_CDS 153 483 151 488 PF07156.14 Prenylcys_lyase Family 3 357 363 322.2 4.2e-96 1 CL0063
Cotton_A_34558_CDS 1 18 1 21 PF13516.6 LRR_6 Repeat 3 20 24 13.0 0.08 1 CL0022
Cotton_A_34558_CDS 89 104 87 104 PF13516.6 LRR_6 Repeat 3 18 24 9.6 1 1 CL0022
Cotton_A_12048_CDS 121 259 118 262 PF01694.22 Rhomboid Family 4 147 150 134.9 2.1e-39 1 CL0207
Cotton_A_13560_CDS 26 74 24 76 PF00415.18 RCC1 Repeat 3 48 50 35.1 1.6e-08 1 CL0186
Cotton_A_13560_CDS 80 127 79 128 PF00415.18 RCC1 Repeat 2 49 50 49.3 5.7e-13 1 CL0186
Cotton_A_13560_CDS 131 180 131 180 PF00415.18 RCC1 Repeat 1 50 50 49.4 5.3e-13 1 CL0186
Cotton_A_13560_CDS 189 237 187 237 PF00415.18 RCC1 Repeat 4 50 50 28.0 2.5e-06 1 CL0186
Cotton_A_21409_CDS 49 152 49 152 PF00011.21 HSP20 Family 1 102 102 111.2 2.2e-32 1 CL0190
Cotton_A_14407_CDS 129 229 129 231 PF02362.21 B3 Family 1 99 101 73.5 9.9e-21 1 CL0405
Cotton_A_14407_CDS 255 334 255 334 PF06507.13 Auxin_resp Family 1 83 83 108.6 1.4e-31 1 No_clan
Cotton_A_14407_CDS 559 665 543 667 PF02309.16 AUX_IAA Family 107 235 237 48.4 1.1e-12 1 CL0072
Cotton_A_29400_CDS 62 293 57 293 PF00481.21 PP2C Family 10 258 258 191.9 1.5e-56 1 CL0238
Cotton_A_05431_CDS 6 240 6 240 PF06888.12 Put_Phosphatase Family 1 234 234 305.4 2.3e-91 1 CL0137
Cotton_A_03703_CDS 81 412 73 412 PF05060.14 MGAT2 Family 11 349 349 352.7 2e-105 1 CL0110
Cotton_A_17321_CDS 175 301 175 301 PF00134.23 Cyclin_N Domain 1 127 127 153.0 3.1e-45 1 CL0065
Cotton_A_17321_CDS 303 418 303 420 PF02984.19 Cyclin_C Domain 1 117 119 118.0 2.4e-34 1 CL0065
Cotton_A_22066_CDS 50 399 50 399 PF06136.13 DUF966 Family 1 377 377 427.8 5.6e-128 1 No_clan
Cotton_A_30108_CDS 1 316 1 317 PF03214.13 RGP Family 23 341 342 571.6 5.4e-172 1 CL0110
Cotton_A_04790_CDS 90 348 90 348 PF00069.25 Pkinase Domain 1 264 264 253.1 2.8e-75 1 CL0016
Cotton_A_04790_CDS 396 456 393 457 PF13499.6 EF-hand_7 Domain 4 70 71 46.2 4.6e-12 1 CL0220
Cotton_A_04790_CDS 466 528 465 528 PF13499.6 EF-hand_7 Domain 2 71 71 55.0 8.2e-15 1 CL0220
Cotton_A_39498_CDS 61 152 37 152 PF00583.25 Acetyltransf_1 Family 35 117 117 55.4 6.5e-15 1 CL0257
Cotton_A_00646_CDS 13 259 13 259 PF06813.13 Nodulin-like Family 1 250 250 314.5 4.8e-94 1 CL0015
Cotton_A_06674_CDS 1 57 1 59 PF01566.18 Nramp Family 18 74 358 51.1 9.7e-14 1 CL0062
Cotton_A_25967_CDS 128 156 127 156 PF12552.8 DUF3741 Family 17 45 45 41.5 9.1e-11 1 No_clan
Cotton_A_25967_CDS 419 568 418 568 PF14309.6 DUF4378 Family 3 165 165 86.1 3.5e-24 1 No_clan
Cotton_A_35128_CDS 154 235 123 240 PF01569.21 PAP2 Family 50 130 136 28.5 1.1e-06 1 CL0525
Cotton_A_01859_CDS 88 327 88 328 PF00102.27 Y_phosphatase Domain 1 234 235 238.5 7.2e-71 1 CL0031
Cotton_A_40203_CDS 113 131 111 131 PF00612.27 IQ Motif 3 21 21 25.2 8.2e-06 1 CL0220
Cotton_A_40203_CDS 435 525 421 529 PF13178.6 DUF4005 Family 15 89 93 52.3 6.7e-14 1 No_clan
Cotton_A_00601_CDS 78 312 78 312 PF00182.19 Glyco_hydro_19 Domain 1 232 232 352.6 1.2e-105 1 CL0037
Cotton_A_07873_CDS 30 112 30 114 PF00234.22 Tryp_alpha_amyl Family 1 85 87 30.3 4.1e-07 1 CL0482
Cotton_A_05165_CDS 22 322 21 322 PF02535.22 Zip Family 2 333 333 213.2 5.6e-63 1 CL0184
Cotton_A_15987_CDS 43 150 43 151 PF14226.6 DIOX_N Family 1 117 118 86.2 2.7e-24 1 CL0029
Cotton_A_15987_CDS 200 296 197 296 PF03171.20 2OG-FeII_Oxy Domain 4 101 101 84.5 5.9e-24 1 CL0029
Cotton_A_13274_CDS 92 119 50 120 PF12014.8 DUF3506 Family 111 138 139 24.8 1.7e-05 1 No_clan
Cotton_A_15301_CDS 57 295 55 296 PF00230.20 MIP Family 3 225 227 131.7 3.2e-38 1 No_clan
Cotton_A_35275_CDS 897 986 894 1020 PF10198.9 Ada3 Family 4 95 132 30.9 2.6e-07 1 No_clan
Cotton_A_17843_CDS 3 57 1 58 PF14111.6 DUF4283 Domain 92 144 145 37.6 1.4e-09 1 No_clan
Cotton_A_00504_CDS 17 79 16 80 PF01246.20 Ribosomal_L24e Domain 3 65 66 96.0 1.1e-27 1 CL0175
Cotton_A_13068_CDS 31 379 31 379 PF00282.19 Pyridoxal_deC Domain 1 375 375 356.4 1.4e-106 1 CL0061
Cotton_A_27760_CDS 103 237 102 237 PF04116.13 FA_hydroxylase Family 2 133 133 100.5 8.8e-29 1 No_clan
Cotton_A_02005_CDS 290 361 287 361 PF02201.18 SWIB Domain 8 74 74 46.0 3.6e-12 1 No_clan
Cotton_A_02005_CDS 458 500 458 502 PF02213.16 GYF Domain 1 43 45 45.0 6.2e-12 1 CL0673
Cotton_A_10773_CDS 66 264 66 265 PF03798.16 TRAM_LAG1_CLN8 Domain 1 197 198 141.1 3.6e-41 1 No_clan
Cotton_A_08143_CDS 33 89 32 90 PF02701.15 zf-Dof Family 2 58 59 109.7 5.6e-32 1 No_clan
Cotton_A_16242_CDS 7 41 4 47 PF00646.33 F-box Domain 6 40 48 30.8 1.9e-07 1 CL0271
Cotton_A_40739_CDS 246 282 246 288 PF12799.7 LRR_4 Repeat 1 36 44 29.3 8.2e-07 1 CL0022
Cotton_A_40739_CDS 683 753 662 763 PF14381.6 EDR1 Family 117 188 200 42.8 4.7e-11 1 CL0125
Cotton_A_09806_CDS 43 101 42 101 PF17181.4 EPF Family 2 53 53 67.0 1.1e-18 1 No_clan
Cotton_A_36734_CDS 161 292 161 293 PF00004.29 AAA Domain 1 131 132 132.7 1e-38 1 CL0023
Cotton_A_36734_CDS 321 350 315 363 PF17862.1 AAA_lid_3 Domain 7 36 45 37.7 1.3e-09 1 CL0671
Cotton_A_30087_CDS 144 218 144 218 PF03110.14 SBP Domain 1 75 75 92.0 2.2e-26 1 No_clan
Cotton_A_25124_CDS 40 158 13 160 PF03801.13 Ndc80_HEC Family 27 151 153 104.1 5.3e-30 1 No_clan
Cotton_A_25598_CDS 121 278 119 278 PF04678.13 MCU Family 3 176 176 164.6 2.4e-48 1 No_clan
Cotton_A_16624_CDS 2 150 1 150 PF00067.22 p450 Domain 8 158 463 51.5 6.6e-14 1 No_clan
Cotton_A_08939_CDS 69 243 65 244 PF00722.21 Glyco_hydro_16 Domain 5 176 177 185.1 7.7e-55 1 CL0004
Cotton_A_08939_CDS 280 326 278 326 PF06955.12 XET_C Family 3 47 47 59.5 2e-16 1 CL0004
Cotton_A_16163_CDS 47 174 46 181 PF04652.16 Vta1 Family 2 133 145 35.9 6.4e-09 1 No_clan
Cotton_A_16163_CDS 752 831 751 835 PF02364.15 Glucan_synthase Family 2 83 819 84.8 4.2e-24 1 CL0111
Cotton_A_16163_CDS 1095 1448 1093 1455 PF02364.15 Glucan_synthase Family 379 731 819 402.4 4e-120 1 CL0111
Cotton_A_32512_CDS 88 314 88 315 PF01063.19 Aminotran_4 Domain 1 222 223 144.1 5.5e-42 1 No_clan
Cotton_A_29306_CDS 9 72 7 72 PF00808.23 CBFD_NFYB_HMF Domain 3 65 65 86.7 9.5e-25 1 CL0012
Cotton_A_01090_CDS 473 592 468 594 PF00069.25 Pkinase Domain 145 260 264 37.6 1.6e-09 1 CL0016
Cotton_A_07169_CDS 468 620 467 620 PF02182.17 SAD_SRA Domain 2 157 157 159.2 6.2e-47 1 CL0178
Cotton_A_07169_CDS 642 738 642 738 PF05033.16 Pre-SET Family 1 109 109 66.4 3.1e-18 1 No_clan
Cotton_A_07169_CDS 757 889 757 889 PF00856.28 SET Family 1 169 169 78.9 5.6e-22 1 No_clan
Cotton_A_23199_CDS 147 206 147 207 PF03106.15 WRKY Domain 1 58 59 92.9 1e-26 1 CL0274
Cotton_A_35102_CDS 5 428 4 436 PF02458.15 Transferase Family 2 422 434 234.8 1.5e-69 1 CL0149
Cotton_A_39528_CDS 580 710 561 711 PF00078.27 RVT_1 Family 57 221 222 68.8 4.8e-19 1 CL0027
Cotton_A_39528_CDS 752 830 701 830 PF17917.1 RT_RNaseH Domain 27 105 105 59.6 2.9e-16 1 CL0219
Cotton_A_07463_CDS 9 57 9 57 PF03765.15 CRAL_TRIO_N Domain 1 51 54 36.1 5.6e-09 1 CL0214
Cotton_A_07463_CDS 70 224 67 225 PF00650.20 CRAL_TRIO Domain 4 155 159 75.5 3.8e-21 1 CL0512
Cotton_A_27412_CDS 1 18 1 25 PF02533.15 PsbK Family 20 37 41 37.4 2.1e-09 1 No_clan
Cotton_A_17533_CDS 25 169 20 169 PF10604.9 Polyketide_cyc2 Family 6 143 143 53.6 2.7e-14 1 CL0209
Cotton_A_28581_CDS 12 126 12 126 PF02136.20 NTF2 Domain 1 120 120 98.6 3.6e-28 1 CL0051
Cotton_A_28581_CDS 320 389 320 390 PF00076.22 RRM_1 Domain 1 69 70 32.6 5.2e-08 1 CL0221
Cotton_A_11416_CDS 1 399 1 410 PF00067.22 p450 Domain 46 449 463 309.6 3.5e-92 1 No_clan
Cotton_A_12838_CDS 17 121 17 155 PF04266.14 ASCH Domain 1 73 107 59.5 4.1e-16 1 CL0178
Cotton_A_28609_CDS 15 262 15 262 PF06813.13 Nodulin-like Family 1 250 250 316.2 1.4e-94 1 CL0015
Cotton_A_00732_CDS 22 200 22 201 PF01728.19 FtsJ Family 1 176 177 167.7 2.7e-49 1 CL0063
Cotton_A_00732_CDS 236 386 234 386 PF11861.8 DUF3381 Family 3 165 165 139.4 8.9e-41 1 No_clan
Cotton_A_00732_CDS 620 812 618 816 PF07780.12 Spb1_C Domain 3 206 211 204.4 1.5e-60 1 No_clan
Cotton_A_13133_CDS 46 461 46 471 PF00067.22 p450 Domain 1 438 463 236.9 3.9e-70 1 No_clan
Cotton_A_13907_CDS 17 287 17 287 PF01370.21 Epimerase Family 1 241 241 202.7 6e-60 1 CL0063
Cotton_A_40492_CDS 484 651 483 668 PF00069.25 Pkinase Domain 2 169 264 123.6 8.8e-36 1 CL0016
Cotton_A_40492_CDS 713 816 693 816 PF00069.25 Pkinase Domain 154 264 264 74.9 6.2e-21 1 CL0016
Cotton_A_39409_CDS 74 280 74 280 PF03798.16 TRAM_LAG1_CLN8 Domain 1 198 198 140.5 5.6e-41 1 No_clan
Cotton_A_09216_CDS 15 56 14 56 PF00010.26 HLH Domain 14 53 53 22.2 0.0001 1 No_clan
Cotton_A_01045_CDS 20 66 19 66 PF03107.16 C1_2 Domain 2 47 47 40.7 2.2e-10 1 CL0006
Cotton_A_12589_CDS 19 65 19 78 PF14226.6 DIOX_N Family 1 52 118 35.2 1.8e-08 1 CL0029
Cotton_A_07028_CDS 48 329 45 329 PF00069.25 Pkinase Domain 6 264 264 251.6 8e-75 1 CL0016
Cotton_A_25843_CDS 151 362 151 365 PF01738.18 DLH Domain 1 214 217 98.8 3.1e-28 1 CL0028
Cotton_A_29312_CDS 38 101 16 103 PF00887.19 ACBP Domain 19 82 85 61.5 6.7e-17 1 CL0632
Cotton_A_29312_CDS 185 227 185 229 PF07646.15 Kelch_2 Repeat 1 46 49 32.9 3.9e-08 1 CL0186
Cotton_A_29312_CDS 297 336 296 346 PF13418.6 Kelch_4 Repeat 2 42 49 28.3 1.3e-06 1 CL0186
Cotton_A_29312_CDS 359 405 358 407 PF13415.6 Kelch_3 Domain 2 47 49 39.6 4.5e-10 1 CL0186
Cotton_A_30907_CDS 53 91 53 91 PF04810.15 zf-Sec23_Sec24 Domain 1 39 39 58.2 5.9e-16 1 No_clan
Cotton_A_30907_CDS 130 396 128 396 PF04811.15 Sec23_trunk Domain 3 243 243 230.8 1.7e-68 1 CL0128
Cotton_A_30907_CDS 407 511 406 511 PF08033.12 Sec23_BS Domain 2 96 96 102.1 2.1e-29 1 No_clan
Cotton_A_30907_CDS 525 621 525 624 PF04815.15 Sec23_helical Domain 1 100 103 75.8 1.8e-21 1 No_clan
Cotton_A_30907_CDS 638 725 635 725 PF00626.22 Gelsolin Domain 4 76 76 54.6 7.2e-15 1 CL0092
Cotton_A_05652_CDS 4 118 4 120 PF04145.15 Ctr Family 1 146 148 82.0 6.5e-23 1 No_clan
Cotton_A_34465_CDS 52 190 52 190 PF02365.15 NAM Family 1 126 126 79.5 3.8e-22 1 No_clan
Cotton_A_18765_CDS 1 62 1 63 PF01095.19 Pectinesterase Family 233 297 298 40.4 1.4e-10 1 CL0268
Cotton_A_15421_CDS 94 220 91 224 PF01569.21 PAP2 Family 4 132 136 65.4 4.4e-18 1 CL0525
Cotton_A_06062_CDS 78 350 74 350 PF07714.17 Pkinase_Tyr Domain 6 259 259 160.1 6.2e-47 1 CL0016
Cotton_A_14757_CDS 92 245 92 246 PF15346.6 ARGLU Family 1 150 151 122.4 1.4e-35 1 No_clan
Cotton_A_15117_CDS 222 362 222 377 PF04646.12 DUF604 Family 1 141 256 260.2 1.9e-77 1 CL0110
Cotton_A_00761_CDS 61 130 56 130 PF00111.27 Fer2 Domain 7 78 78 59.6 2.2e-16 1 CL0486
Cotton_A_17651_CDS 6 36 2 36 PF00400.32 WD40 Repeat 9 37 38 13.1 0.14 1 CL0186
Cotton_A_17651_CDS 86 121 83 121 PF00400.32 WD40 Repeat 4 38 38 33.2 6e-08 1 CL0186
Cotton_A_17651_CDS 127 163 125 163 PF00400.32 WD40 Repeat 3 38 38 38.4 1.4e-09 1 CL0186
Cotton_A_17651_CDS 167 205 167 205 PF00400.32 WD40 Repeat 1 38 38 25.5 1.7e-05 1 CL0186
Cotton_A_17651_CDS 619 777 619 777 PF13925.6 Katanin_con80 Domain 1 160 160 165.2 1.2e-48 1 No_clan
Cotton_A_05763_CDS 20 79 18 80 PF01424.22 R3H Domain 3 59 60 60.8 8.9e-17 1 No_clan
Cotton_A_05763_CDS 122 147 99 150 PF12752.7 SUZ Domain 35 54 57 32.1 1.5e-07 1 No_clan
Cotton_A_25949_CDS 56 96 22 108 PF00295.17 Glyco_hydro_28 Domain 49 86 325 23.9 1.9e-05 1 CL0268
Cotton_A_19625_CDS 82 166 72 166 PF01061.24 ABC2_membrane Family 128 210 210 65.1 5.6e-18 1 CL0181
Cotton_A_19625_CDS 171 234 171 234 PF08370.11 PDR_assoc Family 1 65 65 83.1 8.1e-24 1 No_clan
Cotton_A_19625_CDS 300 452 300 452 PF00005.27 ABC_tran Domain 1 137 137 75.6 5.1e-21 1 CL0023
Cotton_A_19625_CDS 598 802 597 803 PF01061.24 ABC2_membrane Family 2 209 210 183.5 3.4e-54 1 CL0181
Cotton_A_01807_CDS 156 333 156 333 PF11891.8 RETICULATA-like Family 1 177 177 225.8 3.2e-67 1 No_clan
Cotton_A_29738_CDS 32 182 13 182 PF01397.21 Terpene_synth Domain 27 192 192 156.9 4.8e-46 1 No_clan
Cotton_A_32103_CDS 137 211 137 211 PF03110.14 SBP Domain 1 75 75 95.7 1.5e-27 1 No_clan
Cotton_A_13312_CDS 10 147 10 147 PF00258.25 Flavodoxin_1 Domain 1 143 143 120.2 7.6e-35 1 CL0042
Cotton_A_13312_CDS 231 444 222 444 PF00667.20 FAD_binding_1 Domain 11 222 222 155.6 1.4e-45 1 CL0076
Cotton_A_13312_CDS 477 587 476 591 PF00175.21 NAD_binding_1 Domain 2 104 109 41.2 2.2e-10 1 CL0091
Cotton_A_37587_CDS 99 144 95 148 PF01529.20 DHHC Family 6 51 134 70.7 1.2e-19 1 No_clan
Cotton_A_21318_CDS 39 241 39 241 PF01812.20 5-FTHF_cyc-lig Family 1 187 187 113.1 1.4e-32 1 CL0246
Cotton_A_00051_CDS 50 140 48 142 PF13837.6 Myb_DNA-bind_4 Domain 3 88 90 47.8 1.4e-12 1 CL0123
Cotton_A_31647_CDS 98 358 98 363 PF12697.7 Abhydrolase_6 Domain 1 211 220 43.3 6.2e-11 1 CL0028
Cotton_A_07563_CDS 54 504 54 509 PF00067.22 p450 Domain 1 458 463 312.7 4.1e-93 1 No_clan
Cotton_A_06830_CDS 143 199 142 207 PF11793.8 FANCL_C Domain 2 62 70 23.6 4.2e-05 1 CL0229
Cotton_A_12337_CDS 47 81 47 93 PF07103.11 DUF1365 Family 1 35 240 31.5 1.3e-07 1 No_clan
Cotton_A_12337_CDS 95 252 84 253 PF07103.11 DUF1365 Family 77 239 240 129.1 2.1e-37 1 No_clan
Cotton_A_20790_CDS 11 69 10 72 PF01363.21 FYVE Domain 2 64 68 50.7 1.5e-13 1 CL0390
Cotton_A_12861_CDS 20 237 19 237 PF02309.16 AUX_IAA Family 2 237 237 292.1 3.7e-87 1 CL0072
Cotton_A_25961_CDS 131 218 127 219 PF17432.2 DUF3458_C Family 230 318 319 119.4 2.1e-34 1 CL0020
Cotton_A_01788_CDS 526 580 525 580 PF00385.24 Chromo Domain 2 54 54 50.8 1.1e-13 1 CL0049
Cotton_A_01788_CDS 634 905 618 906 PF00176.23 SNF2_N Family 54 349 350 214.5 1.7e-63 1 CL0023
Cotton_A_01788_CDS 982 1086 933 1086 PF00271.31 Helicase_C Family 8 111 111 61.2 1.1e-16 1 CL0023
Cotton_A_01788_CDS 1576 1668 1572 1668 PF13907.6 DUF4208 Domain 5 96 96 59.4 3.6e-16 1 No_clan
Cotton_A_33691_CDS 103 261 103 261 PF01556.18 DnaJ_C Domain 1 148 148 130.5 5e-38 1 No_clan
Cotton_A_21810_CDS 1 158 1 158 PF00407.19 Bet_v_1 Domain 1 151 151 67.7 9.8e-19 1 CL0209
Cotton_A_18299_CDS 6 113 6 114 PF13881.6 Rad60-SLD_2 Domain 1 110 111 143.3 2.8e-42 1 CL0072
Cotton_A_25739_CDS 1 114 1 117 PF00311.17 PEPcase Family 444 571 795 128.2 2.9e-37 1 CL0151
Cotton_A_30651_CDS 13 184 13 184 PF03152.14 UFD1 Family 1 173 173 241.2 4.2e-72 1 CL0402
Cotton_A_34240_CDS 114 148 113 149 PF00400.32 WD40 Repeat 2 35 38 29.1 1.2e-06 1 CL0186
Cotton_A_34240_CDS 170 205 168 205 PF00400.32 WD40 Repeat 5 37 38 15.3 0.027 1 CL0186
Cotton_A_25023_CDS 20 83 18 84 PF00690.26 Cation_ATPase_N Domain 3 68 69 48.7 4.5e-13 1 No_clan
Cotton_A_25023_CDS 132 309 130 311 PF00122.20 E1-E2_ATPase Family 3 179 181 157.4 2.7e-46 1 No_clan
Cotton_A_25023_CDS 327 604 327 604 PF00702.26 Hydrolase Domain 1 210 210 64.9 1.2e-17 1 CL0137
Cotton_A_25493_CDS 32 237 32 238 PF00314.17 Thaumatin Domain 1 213 214 259.0 3.1e-77 1 CL0293
Cotton_A_25040_CDS 1 102 1 106 PF04825.13 Rad21_Rec8_N Family 1 105 110 125.7 8.7e-37 1 No_clan
Cotton_A_25040_CDS 1162 1210 1157 1211 PF04824.16 Rad21_Rec8 Family 6 54 55 66.3 1e-18 1 CL0157
Cotton_A_10044_CDS 21 70 21 84 PF05758.12 Ycf1 Family 1 50 945 71.5 3.7e-20 1 No_clan
Cotton_A_20957_CDS 11 103 9 113 PF00168.30 C2 Domain 3 90 103 38.1 1.4e-09 1 CL0154
Cotton_A_20513_CDS 16 157 14 158 PF00892.20 EamA Family 3 136 137 50.7 2e-13 1 CL0184
Cotton_A_20513_CDS 193 332 192 333 PF00892.20 EamA Family 2 136 137 54.8 1.1e-14 1 CL0184
Cotton_A_01028_CDS 98 531 98 535 PF00854.21 PTR2 Family 1 391 395 323.7 1.5e-96 1 CL0015
Cotton_A_34226_CDS 200 243 200 243 PF01476.20 LysM Domain 1 44 44 21.4 0.00019 1 CL0187
Cotton_A_34226_CDS 401 641 392 643 PF00069.25 Pkinase Domain 40 259 264 138.0 3.6e-40 1 CL0016
Cotton_A_05758_CDS 58 151 58 152 PF06749.12 DUF1218 Family 1 90 91 81.7 4.1e-23 1 No_clan
Cotton_A_16546_CDS 23 283 23 294 PF00501.28 AMP-binding Family 1 264 423 141.9 2.1e-41 1 CL0378
Cotton_A_16546_CDS 503 583 503 583 PF13193.6 AMP-binding_C Domain 1 76 76 71.2 1.1e-19 1 CL0531
Cotton_A_25950_CDS 69 329 68 329 PF00069.25 Pkinase Domain 2 264 264 242.7 4.1e-72 1 CL0016
Cotton_A_28200_CDS 195 236 194 236 PF00400.32 WD40 Repeat 2 38 38 20.1 0.00084 1 CL0186
Cotton_A_28438_CDS 44 96 44 96 PF13445.6 zf-RING_UBOX Domain 1 39 39 34.6 1.4e-08 1 CL0229
Cotton_A_03796_CDS 337 426 195 440 PF00201.18 UDPGT Family 325 409 499 36.9 1.8e-09 1 CL0113
Cotton_A_24954_CDS 27 173 26 173 PF00657.22 Lipase_GDSL Family 103 200 200 44.7 1.4e-11 1 CL0264
Cotton_A_04644_CDS 51 381 50 381 PF01148.20 CTP_transf_1 Family 2 266 266 287.5 1.2e-85 1 CL0234
Cotton_A_06849_CDS 93 126 61 128 PF00571.28 CBS Domain 24 55 57 17.5 0.0041 1 No_clan
Cotton_A_06849_CDS 138 193 138 194 PF00571.28 CBS Domain 1 56 57 46.7 3.2e-12 1 No_clan
Cotton_A_25516_CDS 56 375 55 375 PF00231.19 ATP-synt Domain 2 279 279 303.2 2.2e-90 1 No_clan
Cotton_A_00921_CDS 115 191 115 192 PF13417.6 GST_N_3 Domain 1 74 75 69.1 3.3e-19 1 CL0172
Cotton_A_00921_CDS 233 291 224 292 PF13410.6 GST_C_2 Domain 15 68 69 32.1 8.8e-08 1 CL0497
Cotton_A_13180_CDS 5 261 5 261 PF00069.25 Pkinase Domain 1 264 264 245.2 7.3e-73 1 CL0016
Cotton_A_17951_CDS 56 93 56 94 PF08802.10 CytB6-F_Fe-S Domain 1 38 39 62.4 2.9e-17 1 CL0300
Cotton_A_17951_CDS 139 196 112 200 PF00355.26 Rieske Domain 26 85 89 45.3 6.3e-12 1 CL0516
Cotton_A_38100_CDS 103 155 102 155 PF14416.6 PMR5N Domain 2 53 53 81.8 3.2e-23 1 No_clan
Cotton_A_38100_CDS 156 428 156 429 PF13839.6 PC-Esterase Family 1 282 283 282.9 3.6e-84 1 CL0264
Cotton_A_37993_CDS 175 447 161 452 PF00294.24 PfkB Family 31 297 302 132.5 1.9e-38 1 CL0118
Cotton_A_06177_CDS 141 374 141 379 PF05904.11 DUF863 Family 1 245 938 227.7 3.4e-67 1 No_clan
Cotton_A_06177_CDS 370 1032 369 1033 PF05904.11 DUF863 Family 272 937 938 799.0 8e-240 1 No_clan
Cotton_A_13610_CDS 26 486 25 486 PF00083.24 Sugar_tr Family 2 452 452 383.5 1.4e-114 1 CL0015
Cotton_A_31958_CDS 158 284 136 292 PF01852.19 START Domain 47 177 209 63.9 1.4e-17 1 CL0209
Cotton_A_31958_CDS 471 678 471 678 PF07059.12 DUF1336 Family 1 229 229 214.5 2e-63 1 No_clan
Cotton_A_32136_CDS 128 144 127 144 PF00098.23 zf-CCHC Domain 2 18 18 30.2 3.1e-07 1 CL0511
Cotton_A_18058_CDS 185 255 169 256 PF08241.12 Methyltransf_11 Domain 21 95 96 44.8 1.5e-11 1 CL0063
Cotton_A_26946_CDS 19 54 5 54 PF00330.20 Aconitase Family 427 461 461 43.5 2.1e-11 1 No_clan
Cotton_A_26946_CDS 185 280 182 282 PF00694.19 Aconitase_C Domain 4 99 131 88.0 6.3e-25 1 CL0364
Cotton_A_13630_CDS 105 173 105 173 PF00076.22 RRM_1 Domain 1 70 70 60.4 1.1e-16 1 CL0221
Cotton_A_08590_CDS 324 343 324 346 PF00560.33 LRR_1 Repeat 1 20 23 9.6 1.5 1 CL0022
Cotton_A_08590_CDS 434 618 432 618 PF11721.8 Malectin Domain 3 165 165 116.9 9.5e-34 1 CL0202
Cotton_A_08590_CDS 703 966 700 968 PF07714.17 Pkinase_Tyr Domain 4 257 259 153.2 7.5e-45 1 CL0016
Cotton_A_30630_CDS 42 212 40 213 PF01595.20 DUF21 Domain 3 175 176 121.5 3e-35 1 No_clan
Cotton_A_18707_CDS 8 118 2 119 PF13456.6 RVT_3 Domain 14 123 124 23.6 3.6e-05 1 CL0219
Cotton_A_37372_CDS 39 355 37 358 PF00743.19 FMO-like Family 6 336 532 105.5 2.4e-30 1 CL0063
Cotton_A_13032_CDS 9 99 3 102 PF00654.20 Voltage_CLC Family 124 222 354 25.8 5.6e-06 1 No_clan
Cotton_A_10753_CDS 2 140 1 142 PF02453.17 Reticulon Family 17 155 157 152.3 1e-44 1 CL0484
Cotton_A_32101_CDS 51 121 51 121 PF00076.22 RRM_1 Domain 1 70 70 67.7 5.7e-19 1 CL0221
Cotton_A_28069_CDS 73 95 73 95 PF10584.9 Proteasome_A_N Domain 1 23 23 50.0 1.7e-13 1 CL0052
Cotton_A_28069_CDS 96 283 96 283 PF00227.26 Proteasome Domain 1 190 190 214.6 8e-64 1 CL0052
Cotton_A_21933_CDS 287 351 287 351 PF00226.31 DnaJ Domain 1 63 63 69.8 1.6e-19 1 CL0392
Cotton_A_21933_CDS 384 480 383 480 PF14901.6 Jiv90 Domain 2 93 93 112.5 7.7e-33 1 No_clan
Cotton_A_27142_CDS 18 462 6 465 PF02458.15 Transferase Family 13 430 434 135.4 2e-39 1 CL0149
Cotton_A_19518_CDS 106 256 106 256 PF05201.15 GlutR_N Domain 1 146 146 140.6 2.9e-41 1 No_clan
Cotton_A_19518_CDS 272 413 271 413 PF01488.20 Shikimate_DH Family 2 138 138 150.6 2.6e-44 1 CL0063
Cotton_A_19518_CDS 427 531 427 531 PF00745.20 GlutR_dimer Domain 1 97 97 101.8 2.1e-29 1 No_clan
Cotton_A_22727_CDS 28 117 21 123 PF00651.31 BTB Domain 10 101 111 26.7 4.9e-06 1 CL0033
Cotton_A_22727_CDS 211 461 211 461 PF03000.14 NPH3 Family 1 258 258 300.8 9.1e-90 1 No_clan
Cotton_A_13889_CDS 11 34 11 34 PF01754.16 zf-A20 Family 1 24 24 49.3 3.3e-13 1 No_clan
Cotton_A_13889_CDS 105 139 103 140 PF01428.16 zf-AN1 Family 5 39 40 40.7 2e-10 1 No_clan
Cotton_A_29741_CDS 558 711 555 715 PF00270.29 DEAD Domain 4 172 176 30.8 2.2e-07 1 CL0023
Cotton_A_29741_CDS 757 886 746 886 PF00271.31 Helicase_C Family 13 111 111 45.7 7.1e-12 1 CL0023
Cotton_A_29741_CDS 950 1036 948 1058 PF04408.23 HA2 Domain 3 108 108 76.6 1.6e-21 1 No_clan
Cotton_A_29741_CDS 1094 1171 1094 1173 PF07717.16 OB_NTP_bind Domain 1 81 83 62.2 4.3e-17 1 CL0021
Cotton_A_02281_CDS 32 203 32 203 PF01397.21 Terpene_synth Domain 1 192 192 201.2 1.2e-59 1 No_clan
Cotton_A_02281_CDS 234 499 234 499 PF03936.16 Terpene_synth_C Domain 1 267 267 355.5 1.7e-106 1 CL0613
Cotton_A_11049_CDS 989 1147 948 1149 PF08302.11 tRNA_lig_CPD Domain 64 251 254 30.6 2.1e-07 1 No_clan
Cotton_A_25219_CDS 86 387 86 390 PF00206.20 Lyase_1 Domain 1 308 312 196.2 8.4e-58 1 No_clan
Cotton_A_25219_CDS 403 517 403 517 PF08328.11 ASL_C Family 1 115 115 172.0 4e-51 1 No_clan
Cotton_A_36184_CDS 136 189 136 192 PF04818.13 CTD_bind Family 1 58 63 33.3 6.3e-08 1 No_clan
Cotton_A_36812_CDS 9 171 8 174 PF00857.20 Isochorismatase Family 2 157 175 127.1 7.8e-37 1 No_clan
Cotton_A_25955_CDS 59 265 52 265 PF00230.20 MIP Family 8 227 227 169.2 1.1e-49 1 No_clan
Cotton_A_23754_CDS 3 51 1 51 PF14111.6 DUF4283 Domain 97 145 145 38.0 1e-09 1 No_clan
Cotton_A_12823_CDS 322 360 322 370 PF04046.16 PSP Family 1 37 46 50.3 1.6e-13 1 No_clan
Cotton_A_11098_CDS 7 253 7 253 PF06813.13 Nodulin-like Family 1 250 250 240.6 1.7e-71 1 CL0015
Cotton_A_10163_CDS 24 262 23 262 PF13561.6 adh_short_C2 Domain 2 234 234 208.7 8.7e-62 1 CL0063
Cotton_A_32317_CDS 123 166 122 166 PF13639.6 zf-RING_2 Domain 2 44 44 51.0 1.4e-13 1 CL0229
Cotton_A_02588_CDS 107 284 105 307 PF08627.10 CRT-like Family 3 180 334 110.2 9.9e-32 1 CL0184
Cotton_A_02588_CDS 311 408 297 408 PF08627.10 CRT-like Family 224 334 334 32.8 3.4e-08 1 CL0184
Cotton_A_21566_CDS 212 393 84 400 PF00201.18 UDPGT Family 206 380 499 78.8 3.6e-22 1 CL0113
Cotton_A_25484_CDS 108 512 108 513 PF00464.19 SHMT Domain 1 398 399 558.8 5.2e-168 1 CL0061
Cotton_A_26021_CDS 75 212 75 213 PF01565.23 FAD_binding_4 Domain 1 137 139 94.0 6.3e-27 1 CL0077
Cotton_A_26021_CDS 465 523 465 523 PF08031.12 BBE Domain 1 46 46 73.9 7.8e-21 1 CL0277
Cotton_A_11885_CDS 62 111 62 113 PF05608.12 DUF778 Family 1 50 189 71.3 1.3e-19 1 No_clan
Cotton_A_11885_CDS 112 197 110 197 PF05608.12 DUF778 Family 93 189 189 82.8 3.8e-23 1 No_clan
Cotton_A_06549_CDS 3 308 1 317 PF00067.22 p450 Domain 150 453 463 235.6 9.7e-70 1 No_clan
Cotton_A_38229_CDS 43 312 38 313 PF00664.23 ABC_membrane Family 6 273 274 195.2 1.7e-57 1 CL0241
Cotton_A_38229_CDS 381 529 380 529 PF00005.27 ABC_tran Domain 2 137 137 113.1 1.4e-32 1 CL0023
Cotton_A_38229_CDS 685 956 684 958 PF00664.23 ABC_membrane Family 2 272 274 169.9 8.6e-50 1 CL0241
Cotton_A_38229_CDS 1026 1174 1025 1174 PF00005.27 ABC_tran Domain 2 137 137 113.3 1.2e-32 1 CL0023
Cotton_A_27614_CDS 9 214 9 216 PF04654.12 DUF599 Family 1 208 210 256.8 1.2e-76 1 No_clan
Cotton_A_19530_CDS 22 97 12 99 PF00125.24 Histone Domain 53 129 131 52.7 5.1e-14 1 CL0012
Cotton_A_19530_CDS 100 133 100 133 PF16211.5 Histone_H2A_C Family 1 34 35 55.1 4.5e-15 1 No_clan
Cotton_A_25899_CDS 69 198 68 198 PF00069.25 Pkinase Domain 126 264 264 95.4 3.6e-27 1 CL0016
Cotton_A_25899_CDS 238 298 238 298 PF03822.14 NAF Domain 1 54 54 65.7 3e-18 1 CL0573
Cotton_A_25797_CDS 48 239 47 242 PF00149.28 Metallophos Domain 2 201 204 124.5 7.7e-36 1 CL0163
Cotton_A_24505_CDS 10 32 10 32 PF02493.20 MORN Repeat 1 23 23 17.0 0.0038 1 CL0251
Cotton_A_24505_CDS 33 54 33 55 PF02493.20 MORN Repeat 1 22 23 21.0 0.00021 1 CL0251
Cotton_A_24505_CDS 56 76 56 78 PF02493.20 MORN Repeat 1 21 23 22.5 6.9e-05 1 CL0251
Cotton_A_24505_CDS 79 100 79 101 PF02493.20 MORN Repeat 1 22 23 19.0 0.00091 1 CL0251
Cotton_A_24505_CDS 102 123 102 124 PF02493.20 MORN Repeat 1 22 23 25.7 6.8e-06 1 CL0251
Cotton_A_24505_CDS 125 147 125 147 PF02493.20 MORN Repeat 1 23 23 29.7 3.5e-07 1 CL0251
Cotton_A_24505_CDS 148 169 148 170 PF02493.20 MORN Repeat 1 22 23 23.4 3.7e-05 1 CL0251
Cotton_A_24505_CDS 402 738 400 739 PF01504.18 PIP5K Family 3 273 274 293.6 1.3e-87 1 CL0016
Cotton_A_05907_CDS 9 96 5 123 PF18052.1 Rx_N Domain 5 88 93 59.2 3.6e-16 1 No_clan
Cotton_A_05907_CDS 212 345 197 355 PF01852.19 START Domain 44 176 209 72.1 4.1e-20 1 CL0209
Cotton_A_18316_CDS 286 447 284 447 PF12783.7 Sec7_N Domain 3 158 158 114.8 3.5e-33 1 No_clan
Cotton_A_18316_CDS 533 716 532 716 PF01369.20 Sec7 Domain 2 183 183 231.6 5.2e-69 1 No_clan
Cotton_A_10698_CDS 25 72 24 72 PF03107.16 C1_2 Domain 2 47 47 32.8 6.3e-08 1 CL0006
Cotton_A_10698_CDS 82 133 81 133 PF03107.16 C1_2 Domain 2 47 47 29.6 6.4e-07 1 CL0006
Cotton_A_10698_CDS 256 285 252 285 PF00514.23 Arm Repeat 13 41 41 26.6 4.1e-06 1 CL0020
Cotton_A_18847_CDS 18 134 18 135 PF14226.6 DIOX_N Family 1 117 118 117.6 4.8e-34 1 CL0029
Cotton_A_18847_CDS 202 303 198 303 PF03171.20 2OG-FeII_Oxy Domain 5 101 101 82.9 1.8e-23 1 CL0029
Cotton_A_14527_CDS 10 56 9 56 PF13639.6 zf-RING_2 Domain 2 44 44 46.3 4e-12 1 CL0229
Cotton_A_03460_CDS 34 72 32 72 PF08263.12 LRRNT_2 Family 3 41 41 39.1 6.6e-10 1 No_clan
Cotton_A_31901_CDS 36 75 35 76 PF08263.12 LRRNT_2 Family 3 40 41 29.7 5.8e-07 1 No_clan
Cotton_A_31901_CDS 222 280 220 280 PF13855.6 LRR_8 Repeat 3 61 61 29.8 3.6e-07 1 CL0022
Cotton_A_31901_CDS 423 482 422 482 PF13855.6 LRR_8 Repeat 2 61 61 32.2 6.8e-08 1 CL0022
Cotton_A_31901_CDS 568 626 567 626 PF13855.6 LRR_8 Repeat 3 61 61 38.0 1e-09 1 CL0022
Cotton_A_31901_CDS 639 661 639 661 PF00560.33 LRR_1 Repeat 1 23 23 9.9 1.2 1 CL0022
Cotton_A_31901_CDS 687 709 687 709 PF00560.33 LRR_1 Repeat 1 23 23 12.9 0.13 1 CL0022
Cotton_A_31901_CDS 825 1047 823 1093 PF00069.25 Pkinase Domain 3 219 264 116.6 1.2e-33 1 CL0016
Cotton_A_07288_CDS 76 345 76 345 PF03006.20 HlyIII Family 1 224 224 225.1 9e-67 1 CL0192
Cotton_A_32169_CDS 148 231 147 243 PF00855.17 PWWP Domain 2 92 96 45.5 7.3e-12 1 CL0049
Cotton_A_23932_CDS 62 100 60 110 PF00170.21 bZIP_1 Family 3 41 64 30.1 3.9e-07 1 CL0018
Cotton_A_23932_CDS 151 225 150 226 PF14144.6 DOG1 Family 2 76 77 98.1 2.4e-28 1 No_clan
Cotton_A_12933_CDS 31 111 28 111 PF00626.22 Gelsolin Domain 4 76 76 39.6 3.7e-10 1 CL0092
Cotton_A_12933_CDS 152 217 148 219 PF00626.22 Gelsolin Domain 5 70 76 42.7 3.8e-11 1 CL0092
Cotton_A_12933_CDS 272 321 268 338 PF00626.22 Gelsolin Domain 10 58 76 25.9 6.8e-06 1 CL0092
Cotton_A_25574_CDS 16 48 15 48 PF12854.7 PPR_1 Repeat 2 34 34 33.5 2.4e-08 1 CL0020
Cotton_A_25574_CDS 62 87 60 87 PF01535.20 PPR Family 6 31 31 13.3 0.077 1 CL0020
Cotton_A_00243_CDS 67 247 67 249 PF17047.5 SMP_LBD Domain 1 178 180 54.5 9.7e-15 1 CL0648
Cotton_A_00243_CDS 260 358 260 364 PF00168.30 C2 Domain 1 97 103 77.5 7.6e-22 1 CL0154
Cotton_A_00243_CDS 419 521 418 521 PF00168.30 C2 Domain 2 103 103 52.6 4.5e-14 1 CL0154
Cotton_A_36915_CDS 76 246 73 249 PF09735.9 Nckap1 Family 12 169 1118 120.2 8e-35 1 No_clan
Cotton_A_01108_CDS 105 334 105 335 PF02485.21 Branch Family 1 246 247 267.4 1.1e-79 1 CL0110
Cotton_A_23264_CDS 3 175 1 176 PF01501.20 Glyco_transf_8 Family 86 255 256 106.0 2.3e-30 1 CL0110
Cotton_A_31634_CDS 31 426 30 429 PF01490.18 Aa_trans Family 2 406 409 374.8 4.5e-112 1 CL0062
Cotton_A_10024_CDS 54 336 54 338 PF03009.17 GDPD Family 1 257 259 176.1 1.1e-51 1 CL0384
Cotton_A_16465_CDS 106 395 106 395 PF08392.12 FAE1_CUT1_RppA Family 1 290 290 483.9 1.5e-145 1 CL0046
Cotton_A_16465_CDS 412 492 409 493 PF08541.10 ACP_syn_III_C Domain 12 89 90 38.6 9.2e-10 1 CL0046
Cotton_A_03341_CDS 13 109 12 111 PF00034.21 Cytochrom_C Domain 2 90 92 49.4 7.8e-13 1 CL0318
Cotton_A_06105_CDS 67 252 67 254 PF17047.5 SMP_LBD Domain 1 178 180 56.8 1.9e-15 1 CL0648
Cotton_A_06105_CDS 266 365 266 370 PF00168.30 C2 Domain 1 98 103 83.5 1.1e-23 1 CL0154
Cotton_A_06105_CDS 434 534 433 535 PF00168.30 C2 Domain 2 102 103 51.6 9.4e-14 1 CL0154
Cotton_A_06915_CDS 96 506 95 508 PF01490.18 Aa_trans Family 2 407 409 180.0 6e-53 1 CL0062
Cotton_A_05925_CDS 108 538 108 538 PF00854.21 PTR2 Family 1 395 395 358.6 3.5e-107 1 CL0015
Cotton_A_20905_CDS 86 331 58 331 PF00481.21 PP2C Family 34 258 258 212.0 1.1e-62 1 CL0238
Cotton_A_21873_CDS 96 418 94 430 PF00295.17 Glyco_hydro_28 Domain 4 310 325 277.3 1.5e-82 1 CL0268
Cotton_A_33815_CDS 30 68 28 69 PF08263.12 LRRNT_2 Family 3 40 41 35.5 9.1e-09 1 No_clan
Cotton_A_33815_CDS 193 254 193 254 PF13855.6 LRR_8 Repeat 1 61 61 28.8 7.4e-07 1 CL0022
Cotton_A_26593_CDS 10 179 10 181 PF00071.22 Ras Domain 1 160 162 174.8 1e-51 1 CL0023
Cotton_A_40118_CDS 8 145 7 147 PF00582.26 Usp Domain 4 139 141 33.8 4.2e-08 1 CL0039
Cotton_A_40118_CDS 254 518 254 521 PF00069.25 Pkinase Domain 1 259 264 136.6 9.8e-40 1 CL0016
Cotton_A_20467_CDS 44 124 44 129 PF01627.23 Hpt Family 1 80 85 33.1 4.8e-08 1 No_clan
Cotton_A_16517_CDS 12 267 12 267 PF00069.25 Pkinase Domain 1 264 264 236.8 2.6e-70 1 CL0016
Cotton_A_16517_CDS 306 364 306 365 PF03822.14 NAF Domain 1 53 54 62.1 4.1e-17 1 CL0573
Cotton_A_02936_CDS 216 362 216 364 PF01764.25 Lipase_3 Family 1 140 142 117.7 3.5e-34 1 CL0028
Cotton_A_17120_CDS 40 384 39 388 PF03016.15 Exostosin Family 2 296 300 246.1 4.5e-73 1 No_clan
Cotton_A_01130_CDS 204 249 204 249 PF10533.9 Plant_zn_clust Domain 1 49 49 67.9 5.3e-19 1 No_clan
Cotton_A_01130_CDS 253 309 252 310 PF03106.15 WRKY Domain 2 58 59 89.5 1.2e-25 1 CL0274
Cotton_A_40538_CDS 52 112 50 112 PF05498.11 RALF Family 3 65 65 90.0 1.4e-25 1 No_clan
Cotton_A_05154_CDS 21 110 21 123 PF06813.13 Nodulin-like Family 1 88 250 62.4 4.4e-17 1 CL0015
Cotton_A_23440_CDS 75 345 73 345 PF07714.17 Pkinase_Tyr Domain 3 259 259 214.6 1.4e-63 1 CL0016
Cotton_A_01209_CDS 86 211 86 211 PF00917.26 MATH Domain 1 113 113 41.3 1.4e-10 1 CL0389
Cotton_A_01209_CDS 446 552 422 552 PF00917.26 MATH Domain 18 113 113 43.8 2.3e-11 1 CL0389
Cotton_A_01209_CDS 595 702 591 707 PF00917.26 MATH Domain 4 107 113 19.1 0.0011 1 CL0389
Cotton_A_18634_CDS 69 384 68 400 PF01603.20 B56 Family 2 320 415 506.3 6.4e-152 1 CL0020
Cotton_A_15329_CDS 147 245 144 245 PF01554.18 MatE Family 65 161 161 51.1 1.2e-13 1 CL0222
Cotton_A_15329_CDS 310 463 308 467 PF01554.18 MatE Family 4 157 161 55.3 5.8e-15 1 CL0222
Cotton_A_03865_CDS 79 376 74 377 PF05212.12 DUF707 Family 9 295 296 453.0 4.3e-136 1 No_clan
Cotton_A_36723_CDS 9 88 9 119 PF14226.6 DIOX_N Family 1 77 118 42.8 7.8e-11 1 CL0029
Cotton_A_36723_CDS 170 261 162 263 PF03171.20 2OG-FeII_Oxy Domain 7 99 101 63.0 2.8e-17 1 CL0029
Cotton_A_06514_CDS 85 164 84 168 PF06012.12 DUF908 Family 3 96 358 48.0 1.2e-12 1 No_clan
Cotton_A_32555_CDS 4 58 4 58 PF05207.13 zf-CSL Domain 1 59 59 75.6 1.8e-21 1 CL0167
Cotton_A_17624_CDS 66 197 64 198 PF03004.14 Transposase_24 Family 3 141 142 82.4 3.2e-23 1 No_clan
Cotton_A_38901_CDS 15 124 11 138 PF00464.19 SHMT Domain 57 166 399 128.6 2.3e-37 1 CL0061
Cotton_A_26547_CDS 29 143 26 148 PF07714.17 Pkinase_Tyr Domain 4 123 259 67.8 8.5e-19 1 CL0016
Cotton_A_01068_CDS 9 437 2 437 PF00171.22 Aldedh Family 35 462 462 271.6 9.4e-81 1 CL0099
Cotton_A_39450_CDS 66 118 64 123 PF03004.14 Transposase_24 Family 3 56 142 27.1 3.6e-06 1 No_clan
Cotton_A_02745_CDS 11 68 10 69 PF05160.13 DSS1_SEM1 Family 2 59 60 62.1 3.9e-17 1 No_clan
Cotton_A_18043_CDS 43 189 42 189 PF04043.15 PMEI Domain 2 154 154 75.3 6.5e-21 1 No_clan
Cotton_A_18043_CDS 245 510 245 512 PF01095.19 Pectinesterase Family 1 264 298 370.1 5.3e-111 1 CL0268
Cotton_A_15735_CDS 49 592 49 592 PF09739.9 MCM_bind Family 1 584 584 621.8 1.1e-186 1 No_clan
Cotton_A_05460_CDS 7 55 1 55 PF13561.6 adh_short_C2 Domain 187 234 234 39.1 5.7e-10 1 CL0063
Cotton_A_17442_CDS 4 92 1 96 PF15697.5 DUF4666 Family 3 107 111 76.0 3.5e-21 1 No_clan
Cotton_A_36714_CDS 1 72 1 92 PF00078.27 RVT_1 Family 132 207 222 53.9 1.7e-14 1 CL0027
Cotton_A_36714_CDS 137 172 135 176 PF17921.1 Integrase_H2C2 Domain 3 36 58 29.8 4.7e-07 1 CL0361
Cotton_A_39787_CDS 14 37 14 37 PF01754.16 zf-A20 Family 1 24 24 48.1 7.9e-13 1 No_clan
Cotton_A_28907_CDS 106 299 105 300 PF01762.21 Galactosyl_T Family 2 194 195 165.5 1.3e-48 1 CL0110
Cotton_A_30154_CDS 83 374 83 374 PF00069.25 Pkinase Domain 1 264 264 215.6 7.6e-64 1 CL0016
Cotton_A_22464_CDS 169 387 154 389 PF00931.22 NB-ARC Domain 18 250 252 159.3 9.7e-47 1 CL0023
Cotton_A_02541_CDS 9 85 1 88 PF03492.15 Methyltransf_7 Family 14 101 334 80.0 1.8e-22 1 CL0063
Cotton_A_36122_CDS 8 56 7 57 PF00847.20 AP2 Domain 3 53 54 36.7 3.6e-09 1 CL0081
Cotton_A_30278_CDS 37 194 36 198 PF12619.8 MCM2_N Family 2 147 153 71.4 1e-19 1 No_clan
Cotton_A_30278_CDS 223 316 222 317 PF14551.6 MCM_N Domain 2 104 104 49.7 4.4e-13 1 No_clan
Cotton_A_30278_CDS 322 427 322 429 PF17207.3 MCM_OB Domain 1 124 126 96.3 1.2e-27 1 CL0021
Cotton_A_30278_CDS 499 706 492 706 PF00493.23 MCM Domain 17 224 224 328.2 1.6e-98 1 CL0023
Cotton_A_30278_CDS 743 827 743 827 PF17855.1 MCM_lid Domain 1 87 87 94.8 3.2e-27 1 CL0671
Cotton_A_39967_CDS 98 477 98 479 PF00916.20 Sulfate_transp Family 1 378 380 404.4 3.8e-121 1 CL0062
Cotton_A_39967_CDS 530 645 530 645 PF01740.21 STAS Domain 1 117 117 93.8 5.2e-27 1 CL0502
Cotton_A_07323_CDS 93 212 93 214 PF09335.11 SNARE_assoc Family 1 118 120 69.0 4.9e-19 1 No_clan
Cotton_A_23205_CDS 36 179 34 179 PF10604.9 Polyketide_cyc2 Family 3 143 143 81.1 9.4e-23 1 CL0209
Cotton_A_26050_CDS 2 25 1 26 PF08209.11 Sgf11 Family 9 32 33 39.6 2.8e-10 1 CL0361
Cotton_A_07983_CDS 31 408 31 409 PF07712.12 SURNod19 Domain 1 376 377 627.3 7.1e-189 1 No_clan
Cotton_A_02493_CDS 46 115 46 115 PF00505.19 HMG_box Domain 1 69 69 90.0 9.7e-26 1 CL0114
Cotton_A_24516_CDS 7 45 6 46 PF08263.12 LRRNT_2 Family 2 40 41 34.7 1.6e-08 1 No_clan
Cotton_A_24516_CDS 99 158 98 158 PF13855.6 LRR_8 Repeat 2 61 61 29.0 6.4e-07 1 CL0022
Cotton_A_24516_CDS 298 320 298 326 PF00560.33 LRR_1 Repeat 1 23 23 11.2 0.46 1 CL0022
Cotton_A_24516_CDS 395 454 394 454 PF13855.6 LRR_8 Repeat 2 61 61 27.3 2.2e-06 1 CL0022
Cotton_A_24516_CDS 467 526 466 526 PF13855.6 LRR_8 Repeat 2 61 61 34.5 1.2e-08 1 CL0022
Cotton_A_24516_CDS 661 930 658 930 PF07714.17 Pkinase_Tyr Domain 4 259 259 142.0 2e-41 1 CL0016
Cotton_A_18894_CDS 23 62 22 63 PF08263.12 LRRNT_2 Family 3 40 41 25.3 1.4e-05 1 No_clan
Cotton_A_18894_CDS 115 174 113 174 PF13855.6 LRR_8 Repeat 3 61 61 29.8 3.6e-07 1 CL0022
Cotton_A_18894_CDS 185 207 185 212 PF00560.33 LRR_1 Repeat 1 23 23 12.6 0.16 1 CL0022
Cotton_A_18894_CDS 359 622 356 625 PF00069.25 Pkinase Domain 5 259 264 90.2 1.4e-25 1 CL0016
Cotton_A_08099_CDS 112 195 111 196 PF00887.19 ACBP Domain 2 84 85 95.9 1.3e-27 1 CL0632
Cotton_A_08099_CDS 273 325 273 325 PF13637.6 Ank_4 Repeat 2 55 55 50.3 2.4e-13 1 CL0465
Cotton_A_33041_CDS 154 211 151 211 PF13855.6 LRR_8 Repeat 4 61 61 27.6 1.9e-06 1 CL0022
Cotton_A_33041_CDS 295 353 294 354 PF13855.6 LRR_8 Repeat 2 60 61 34.2 1.5e-08 1 CL0022
Cotton_A_36733_CDS 28 85 28 128 PF14226.6 DIOX_N Family 1 65 118 52.1 9.9e-14 1 CL0029
Cotton_A_36733_CDS 169 271 168 273 PF03171.20 2OG-FeII_Oxy Domain 2 99 101 90.1 1e-25 1 CL0029
Cotton_A_28355_CDS 78 324 78 325 PF00454.27 PI3_PI4_kinase Family 1 249 250 172.9 1.1e-50 1 CL0016
Cotton_A_37227_CDS 6 45 6 64 PF00656.22 Peptidase_C14 Domain 1 42 248 35.6 9.5e-09 1 CL0093
Cotton_A_04417_CDS 22 292 22 297 PF01073.19 3Beta_HSD Family 1 274 280 242.0 6.1e-72 1 CL0063
Cotton_A_04417_CDS 396 550 396 554 PF02453.17 Reticulon Family 1 153 157 114.2 5.5e-33 1 CL0484
Cotton_A_38683_CDS 20 364 20 364 PF04928.17 PAP_central Domain 1 248 248 362.5 7.4e-109 1 No_clan
Cotton_A_38683_CDS 93 169 80 175 PF01909.23 NTP_transf_2 Family 14 89 95 37.2 2.6e-09 1 CL0260
Cotton_A_38683_CDS 367 425 366 430 PF04926.15 PAP_RNA-bind Domain 2 59 171 43.5 2.5e-11 1 No_clan
Cotton_A_38683_CDS 432 500 423 501 PF04926.15 PAP_RNA-bind Domain 104 170 171 25.2 1.1e-05 1 No_clan
Cotton_A_01088_CDS 180 228 179 228 PF13041.6 PPR_2 Repeat 2 50 50 54.2 1.2e-14 1 CL0020
Cotton_A_01088_CDS 249 296 249 297 PF13041.6 PPR_2 Repeat 1 48 50 40.0 3.4e-10 1 CL0020
Cotton_A_01088_CDS 325 345 322 348 PF01535.20 PPR Family 4 24 31 12.3 0.16 1 CL0020
Cotton_A_01088_CDS 350 398 350 399 PF13041.6 PPR_2 Repeat 1 49 50 45.1 8.3e-12 1 CL0020
Cotton_A_01088_CDS 426 449 424 450 PF01535.20 PPR Family 3 26 31 18.0 0.0024 1 CL0020
Cotton_A_05701_CDS 15 93 14 96 PF07011.11 Elf4 Domain 2 80 83 132.6 3.4e-39 1 No_clan
Cotton_A_14647_CDS 33 213 29 214 PF10294.9 Methyltransf_16 Family 6 173 174 126.4 9.8e-37 1 CL0063
Cotton_A_01924_CDS 4 69 4 69 PF08156.13 NOP5NT Domain 1 65 65 63.6 1.6e-17 1 No_clan
Cotton_A_01924_CDS 177 409 177 410 PF01798.18 Nop Family 1 229 230 293.1 1.2e-87 1 No_clan
Cotton_A_24800_CDS 4 500 1 500 PF04791.16 LMBR1 Family 5 510 510 291.0 1.9e-86 1 No_clan
Cotton_A_04060_CDS 29 297 27 297 PF07714.17 Pkinase_Tyr Domain 4 259 259 162.5 1.1e-47 1 CL0016
Cotton_A_29027_CDS 170 364 158 365 PF00067.22 p450 Domain 190 389 463 106.7 1.2e-30 1 No_clan
Cotton_A_07790_CDS 6 126 5 126 PF03311.14 Cornichon Family 2 122 122 133.4 4.9e-39 1 No_clan
Cotton_A_39521_CDS 45 153 45 156 PF00072.24 Response_reg Domain 1 109 112 80.9 7.4e-23 1 CL0304
Cotton_A_39521_CDS 231 279 231 281 PF00249.31 Myb_DNA-binding Domain 1 44 46 29.3 7e-07 1 CL0123
Cotton_A_16645_CDS 9 132 7 139 PF05659.11 RPW8 Family 10 132 139 40.7 1.8e-10 1 No_clan
Cotton_A_14098_CDS 54 205 54 206 PF00719.19 Pyrophosphatase Domain 1 159 160 189.8 2.7e-56 1 No_clan
Cotton_A_07743_CDS 9 342 9 344 PF00225.23 Kinesin Domain 1 330 333 320.1 1.4e-95 1 CL0023
Cotton_A_03175_CDS 152 236 149 236 PF03088.16 Str_synth Family 5 89 89 91.1 3.7e-26 1 CL0186
Cotton_A_33397_CDS 46 422 46 422 PF00282.19 Pyridoxal_deC Domain 1 375 375 396.0 1.3e-118 1 CL0061
Cotton_A_37010_CDS 7 195 7 196 PF01965.24 DJ-1_PfpI Domain 1 164 165 132.9 9.2e-39 1 CL0014
Cotton_A_37010_CDS 208 385 207 387 PF01965.24 DJ-1_PfpI Domain 2 163 165 158.0 1.7e-46 1 CL0014
Cotton_A_11526_CDS 29 165 11 167 PF00582.26 Usp Domain 12 139 141 75.4 6.2e-21 1 CL0039
Cotton_A_22596_CDS 10 315 10 315 PF16363.5 GDP_Man_Dehyd Domain 1 332 332 225.1 1.5e-66 1 CL0063
Cotton_A_22596_CDS 384 556 383 646 PF04321.17 RmlD_sub_bind Domain 2 165 287 54.2 1.2e-14 1 CL0063
Cotton_A_37255_CDS 19 80 1 81 PF00572.18 Ribosomal_L13 Family 44 105 125 67.8 9.9e-19 1 No_clan
Cotton_A_20263_CDS 158 181 158 183 PF01535.20 PPR Family 3 26 31 20.6 0.00036 1 CL0020
Cotton_A_20263_CDS 221 252 220 253 PF12854.7 PPR_1 Repeat 2 33 34 25.4 8.2e-06 1 CL0020
Cotton_A_20263_CDS 258 286 258 287 PF01535.20 PPR Family 1 29 31 25.6 8.7e-06 1 CL0020
Cotton_A_20263_CDS 333 354 331 354 PF01535.20 PPR Family 4 25 31 12.3 0.16 1 CL0020
Cotton_A_20263_CDS 361 390 361 391 PF01535.20 PPR Family 1 30 31 16.9 0.0055 1 CL0020
Cotton_A_20263_CDS 461 507 460 509 PF13041.6 PPR_2 Repeat 2 48 50 35.8 6.9e-09 1 CL0020
Cotton_A_20263_CDS 537 561 534 563 PF01535.20 PPR Family 5 29 31 11.9 0.22 1 CL0020
Cotton_A_20263_CDS 562 608 561 610 PF13041.6 PPR_2 Repeat 2 48 50 39.7 4.1e-10 1 CL0020
Cotton_A_20263_CDS 662 711 662 711 PF13041.6 PPR_2 Repeat 1 50 50 35.0 1.2e-08 1 CL0020
Cotton_A_20263_CDS 738 763 736 764 PF01535.20 PPR Family 3 28 31 13.1 0.089 1 CL0020
Cotton_A_20263_CDS 837 904 836 924 PF14432.6 DYW_deaminase Family 2 63 127 32.8 5.2e-08 1 CL0109
Cotton_A_16492_CDS 1 676 1 676 PF09742.9 Dymeclin Family 1 628 628 513.0 1.1e-153 1 CL0456
Cotton_A_30469_CDS 32 81 31 82 PF00847.20 AP2 Domain 2 53 54 46.5 3.2e-12 1 CL0081
Cotton_A_27357_CDS 18 116 14 116 PF14368.6 LTP_2 Family 2 97 97 55.2 5.5e-15 1 CL0482
Cotton_A_39934_CDS 77 172 76 175 PF01852.19 START Domain 2 99 209 58.3 6.9e-16 1 CL0209
Cotton_A_10234_CDS 71 297 66 307 PF00182.19 Glyco_hydro_19 Domain 6 227 232 208.4 1.3e-61 1 CL0037
Cotton_A_08303_CDS 30 236 28 237 PF01738.18 DLH Domain 3 216 217 110.8 6.5e-32 1 CL0028
Cotton_A_12720_CDS 3 93 3 93 PF17800.1 NPL Domain 1 105 105 65.8 4.3e-18 1 CL0055
Cotton_A_12720_CDS 489 540 470 540 PF00254.28 FKBP_C Domain 42 94 94 45.0 1e-11 1 CL0487
Cotton_A_30867_CDS 262 298 261 299 PF00400.32 WD40 Repeat 2 37 38 20.8 0.00053 1 CL0186
Cotton_A_30867_CDS 309 344 307 344 PF00400.32 WD40 Repeat 4 38 38 18.1 0.0035 1 CL0186
Cotton_A_30867_CDS 348 386 348 386 PF00400.32 WD40 Repeat 1 38 38 15.6 0.022 1 CL0186
Cotton_A_30867_CDS 475 513 473 514 PF00400.32 WD40 Repeat 3 37 38 17.0 0.0083 1 CL0186
Cotton_A_30867_CDS 519 556 518 556 PF00400.32 WD40 Repeat 2 37 38 31.6 2e-07 1 CL0186
Cotton_A_05538_CDS 725 767 725 768 PF06203.14 CCT Motif 1 43 44 49.8 2.5e-13 1 CL0281
Cotton_A_34678_CDS 1 108 1 108 PF04997.12 RNA_pol_Rpb1_1 Domain 206 312 312 99.9 1.7e-28 1 No_clan
Cotton_A_34678_CDS 110 158 110 169 PF00623.20 RNA_pol_Rpb1_2 Domain 1 49 166 32.8 7.4e-08 1 No_clan
Cotton_A_34678_CDS 173 250 158 252 PF00623.20 RNA_pol_Rpb1_2 Domain 87 164 166 92.8 2.6e-26 1 No_clan
Cotton_A_39824_CDS 15 268 13 268 PF00069.25 Pkinase Domain 3 264 264 217.1 2.7e-64 1 CL0016
Cotton_A_10080_CDS 3 88 3 88 PF00163.19 Ribosomal_S4 Family 1 83 83 74.0 1.3e-20 1 CL0492
Cotton_A_10080_CDS 89 132 89 133 PF01479.25 S4 Domain 1 44 48 66.8 9.8e-19 1 CL0492
Cotton_A_25433_CDS 331 400 331 401 PF04542.14 Sigma70_r2 Domain 1 70 71 65.2 3.3e-18 1 CL0123
Cotton_A_25433_CDS 412 483 411 487 PF04539.16 Sigma70_r3 Family 3 74 78 60.9 9.1e-17 1 CL0123
Cotton_A_25433_CDS 500 552 499 552 PF04545.16 Sigma70_r4 Domain 2 50 50 53.0 1.8e-14 1 CL0123
Cotton_A_12163_CDS 18 112 17 113 PF13334.6 DUF4094 Family 2 87 88 117.5 2.6e-34 1 No_clan
Cotton_A_12163_CDS 152 349 152 350 PF01762.21 Galactosyl_T Family 1 194 195 172.7 7.7e-51 1 CL0110
Cotton_A_29555_CDS 100 238 100 240 PF01764.25 Lipase_3 Family 1 140 142 130.8 3.2e-38 1 CL0028
Cotton_A_34142_CDS 11 169 11 171 PF00071.22 Ras Domain 1 159 162 193.3 2.1e-57 1 CL0023
Cotton_A_27865_CDS 71 348 70 348 PF02309.16 AUX_IAA Family 2 237 237 301.6 4.7e-90 1 CL0072
Cotton_A_27872_CDS 10 92 5 137 PF18052.1 Rx_N Domain 2 84 93 84.0 6.6e-24 1 No_clan
Cotton_A_27872_CDS 165 387 164 410 PF00931.22 NB-ARC Domain 2 222 252 168.0 2e-49 1 CL0023
Cotton_A_17849_CDS 36 138 34 139 PF13947.6 GUB_WAK_bind Domain 3 104 106 38.0 2.3e-09 1 No_clan
Cotton_A_17849_CDS 170 243 149 243 PF14380.6 WAK_assoc Domain 29 104 104 72.2 4.9e-20 1 No_clan
Cotton_A_17849_CDS 263 341 261 367 PF13947.6 GUB_WAK_bind Domain 4 79 106 43.8 3.5e-11 1 No_clan
Cotton_A_17849_CDS 408 485 386 485 PF14380.6 WAK_assoc Domain 27 104 104 60.9 1.6e-16 1 No_clan
Cotton_A_17849_CDS 593 861 591 863 PF00069.25 Pkinase Domain 3 260 264 163.4 6.4e-48 1 CL0016
Cotton_A_36206_CDS 90 261 90 261 PF14543.6 TAXi_N Domain 1 178 178 184.7 1.8e-54 1 CL0129
Cotton_A_36206_CDS 283 425 283 426 PF14541.6 TAXi_C Domain 1 160 161 90.6 8.6e-26 1 CL0129
Cotton_A_06876_CDS 233 407 233 407 PF05063.14 MT-A70 Family 1 172 172 114.5 4.7e-33 1 CL0063
Cotton_A_02800_CDS 47 86 46 87 PF18511.1 F-box_5 Domain 2 41 42 72.7 1.2e-20 1 CL0271
Cotton_A_02800_CDS 107 152 106 152 PF18791.1 Transp_inhibit Family 2 47 47 80.9 3.2e-23 1 No_clan
Cotton_A_09025_CDS 40 227 40 227 PF17900.1 Peptidase_M1_N Domain 1 186 186 154.8 2.8e-45 1 CL0672
Cotton_A_09025_CDS 262 480 262 480 PF01433.20 Peptidase_M1 Domain 1 218 218 265.5 3.2e-79 1 CL0126
Cotton_A_09025_CDS 558 874 558 875 PF11838.8 ERAP1_C Domain 1 314 315 268.1 1.3e-79 1 CL0159
Cotton_A_13620_CDS 31 253 30 258 PF05057.14 DUF676 Family 2 214 219 228.0 9.3e-68 1 CL0028
Cotton_A_04975_CDS 18 201 18 201 PF03997.12 VPS28 Family 1 189 189 224.4 9.1e-67 1 CL0596
Cotton_A_15449_CDS 31 94 24 134 PF05340.12 DUF740 Family 11 74 609 23.0 3.1e-05 1 No_clan
Cotton_A_00028_CDS 111 538 92 539 PF00501.28 AMP-binding Family 17 422 423 353.0 1.8e-105 1 CL0378
Cotton_A_00028_CDS 548 607 548 611 PF13193.6 AMP-binding_C Domain 1 68 76 26.5 9.8e-06 1 CL0531
Cotton_A_14388_CDS 2 48 1 76 PF00201.18 UDPGT Family 334 380 499 60.3 1.5e-16 1 CL0113
Cotton_A_26924_CDS 450 487 448 487 PF00400.32 WD40 Repeat 4 38 38 16.8 0.0091 1 CL0186
Cotton_A_25441_CDS 94 306 94 309 PF02146.17 SIR2 Family 1 174 177 137.1 5.9e-40 1 CL0085
Cotton_A_07530_CDS 1 131 1 131 PF01149.24 Fapy_DNA_glyco Domain 1 116 116 104.3 5.9e-30 1 No_clan
Cotton_A_01936_CDS 1 67 1 67 PF11820.8 DUF3339 Family 1 67 67 124.0 1.9e-36 1 No_clan
Cotton_A_15537_CDS 52 550 38 578 PF03999.12 MAP65_ASE1 Family 17 507 598 299.9 4.2e-89 1 No_clan
Cotton_A_25357_CDS 61 109 61 111 PF00847.20 AP2 Domain 1 51 54 42.1 7.5e-11 1 CL0081
Cotton_A_25276_CDS 79 215 79 217 PF01565.23 FAD_binding_4 Domain 1 136 139 91.0 5.5e-26 1 CL0077
Cotton_A_25276_CDS 475 533 475 533 PF08031.12 BBE Domain 1 46 46 70.2 1.1e-19 1 CL0277
Cotton_A_08707_CDS 89 180 86 193 PF14543.6 TAXi_N Domain 4 106 178 72.1 6.4e-20 1 CL0129
Cotton_A_23777_CDS 14 175 14 175 PF17144.4 Ribosomal_L5e Family 1 163 163 267.9 3.2e-80 1 CL0267
Cotton_A_23777_CDS 191 280 191 283 PF14204.6 Ribosomal_L18_c Domain 1 92 95 119.2 1.1e-34 1 No_clan
Cotton_A_32935_CDS 259 535 230 558 PF10151.9 TMEM214 Family 208 466 659 67.0 1.2e-18 1 No_clan
Cotton_A_29452_CDS 313 344 300 359 PF10453.9 NUFIP1 Family 14 42 53 43.0 3e-11 1 No_clan
Cotton_A_03193_CDS 4 97 2 102 PF14111.6 DUF4283 Domain 39 137 145 48.4 6.5e-13 1 No_clan
Cotton_A_25794_CDS 481 650 479 651 PF14429.6 DOCK-C2 Family 3 194 195 107.3 8.5e-31 1 CL0154
Cotton_A_25794_CDS 1284 1888 1277 1888 PF06920.13 DHR-2 Family 11 528 528 508.9 1.6e-152 1 CL0020
Cotton_A_22975_CDS 94 461 93 462 PF03759.13 PRONE Family 2 362 363 609.3 1.9e-183 1 No_clan
Cotton_A_11698_CDS 48 189 46 196 PF00106.25 adh_short Domain 3 140 195 91.0 6.7e-26 1 CL0063
Cotton_A_11698_CDS 200 254 197 258 PF00106.25 adh_short Domain 136 189 195 26.0 5.5e-06 1 CL0063
Cotton_A_26602_CDS 121 311 112 313 PF01786.17 AOX Family 12 213 215 263.2 1.6e-78 1 CL0044
Cotton_A_15944_CDS 4 181 1 187 PF01602.20 Adaptin_N Family 302 479 524 82.9 1.8e-23 1 CL0020
Cotton_A_34830_CDS 42 407 41 407 PF00155.21 Aminotran_1_2 Domain 2 363 363 196.7 6.3e-58 1 CL0061
Cotton_A_37933_CDS 59 141 16 141 PF02519.14 Auxin_inducible Family 13 90 90 93.5 6.6e-27 1 No_clan
Cotton_A_20258_CDS 109 544 109 552 PF00521.20 DNA_topoisoIV Family 1 420 426 493.6 4.8e-148 1 No_clan
Cotton_A_20258_CDS 586 631 585 632 PF03989.13 DNA_gyraseA_C Repeat 2 47 48 32.9 3.3e-08 1 No_clan
Cotton_A_20258_CDS 635 685 635 685 PF03989.13 DNA_gyraseA_C Repeat 1 48 48 25.0 9.8e-06 1 No_clan
Cotton_A_20258_CDS 692 735 691 736 PF03989.13 DNA_gyraseA_C Repeat 2 47 48 22.8 4.5e-05 1 No_clan
Cotton_A_20258_CDS 739 785 739 786 PF03989.13 DNA_gyraseA_C Repeat 1 47 48 31.5 9.2e-08 1 No_clan
Cotton_A_20258_CDS 811 856 810 857 PF03989.13 DNA_gyraseA_C Repeat 2 47 48 36.7 2e-09 1 No_clan
Cotton_A_20258_CDS 869 914 868 915 PF03989.13 DNA_gyraseA_C Repeat 2 47 48 25.4 7.1e-06 1 No_clan
Cotton_A_26606_CDS 532 632 518 634 PF00787.24 PX Domain 15 111 113 32.6 6.3e-08 1 No_clan
Cotton_A_26606_CDS 719 920 719 926 PF13901.6 zf-RING_9 Domain 1 201 206 180.4 4.3e-53 1 CL0229
Cotton_A_25411_CDS 112 168 110 172 PF01842.25 ACT Domain 3 61 67 34.9 9.1e-09 1 CL0070
Cotton_A_20150_CDS 16 97 14 97 PF14144.6 DOG1 Family 3 77 77 89.5 1.2e-25 1 No_clan
Cotton_A_02388_CDS 73 94 71 96 PF13202.6 EF-hand_5 Domain 3 23 25 12.2 0.098 1 CL0220
Cotton_A_02388_CDS 107 177 106 178 PF13499.6 EF-hand_7 Domain 2 70 71 39.8 4.7e-10 1 CL0220
Cotton_A_03936_CDS 15 175 15 176 PF00071.22 Ras Domain 1 161 162 207.7 7.6e-62 1 CL0023
Cotton_A_06680_CDS 66 175 65 175 PF10998.8 DUF2838 Family 2 111 111 136.9 3.1e-40 1 No_clan
Cotton_A_20222_CDS 62 611 62 614 PF07058.11 MAP70 Family 1 550 554 956.4 5.1e-288 1 No_clan
Cotton_A_12470_CDS 39 298 37 298 PF07714.17 Pkinase_Tyr Domain 3 259 259 198.9 8.6e-59 1 CL0016
Cotton_A_26790_CDS 1 85 1 86 PF00891.18 Methyltransf_2 Domain 120 202 210 77.9 6.2e-22 1 CL0063
Cotton_A_35447_CDS 68 387 67 387 PF00069.25 Pkinase Domain 2 264 264 85.2 4.5e-24 1 CL0016
Cotton_A_19603_CDS 72 173 71 173 PF00085.20 Thioredoxin Domain 2 103 103 107.7 2.4e-31 1 CL0172
Cotton_A_38235_CDS 125 167 124 167 PF13639.6 zf-RING_2 Domain 3 44 44 46.6 3.2e-12 1 CL0229
Cotton_A_30141_CDS 716 747 716 748 PF18264.1 preSET_CXC Domain 1 31 32 39.1 7.4e-10 1 No_clan
Cotton_A_30141_CDS 791 905 791 906 PF00856.28 SET Family 1 168 169 43.0 5.9e-11 1 No_clan
Cotton_A_15429_CDS 116 361 78 361 PF00225.23 Kinesin Domain 76 333 333 305.0 5.5e-91 1 CL0023
Cotton_A_41225_CDS 121 220 121 220 PF04504.14 DUF573 Family 1 95 95 112.3 1.3e-32 1 CL0123
Cotton_A_35540_CDS 314 470 310 474 PF02163.22 Peptidase_M50 Family 5 223 250 30.9 1.5e-07 1 CL0126
Cotton_A_35905_CDS 126 172 126 188 PF13740.6 ACT_6 Domain 5 51 76 28.2 1.4e-06 1 CL0070
Cotton_A_09600_CDS 39 411 39 411 PF06258.11 Mito_fiss_Elm1 Family 1 309 309 418.7 1.3e-125 1 CL0113
Cotton_A_06682_CDS 182 269 181 276 PF13962.6 PGG Domain 2 77 116 63.0 2.2e-17 1 No_clan
Cotton_A_33909_CDS 12 167 8 168 PF00270.29 DEAD Domain 6 175 176 32.8 5.5e-08 1 CL0023
Cotton_A_33909_CDS 208 335 195 336 PF00271.31 Helicase_C Family 11 110 111 51.1 1.5e-13 1 CL0023
Cotton_A_33909_CDS 400 526 400 566 PF04408.23 HA2 Domain 1 78 108 72.6 2.7e-20 1 No_clan
Cotton_A_33909_CDS 558 639 558 641 PF07717.16 OB_NTP_bind Domain 1 81 83 62.3 4.1e-17 1 CL0021
Cotton_A_34637_CDS 129 189 128 189 PF04117.12 Mpv17_PMP22 Family 2 62 62 60.3 1.6e-16 1 No_clan
Cotton_A_07519_CDS 274 353 269 353 PF12576.8 DUF3754 Family 52 137 137 39.4 5.1e-10 1 No_clan
Cotton_A_05678_CDS 66 155 65 156 PF00166.21 Cpn10 Domain 2 92 93 98.9 1.3e-28 1 CL0296
Cotton_A_05678_CDS 164 255 163 256 PF00166.21 Cpn10 Domain 2 92 93 97.0 4.9e-28 1 CL0296
Cotton_A_37441_CDS 21 90 20 191 PF00270.29 DEAD Domain 2 73 176 42.7 5e-11 1 CL0023
Cotton_A_37441_CDS 186 297 175 299 PF00888.22 Cullin Family 206 315 618 74.7 6e-21 1 No_clan
Cotton_A_14156_CDS 30 68 28 69 PF08263.12 LRRNT_2 Family 3 40 41 34.7 1.7e-08 1 No_clan
Cotton_A_14156_CDS 219 277 218 278 PF13855.6 LRR_8 Repeat 3 60 61 36.0 4.4e-09 1 CL0022
Cotton_A_14156_CDS 560 582 560 582 PF00560.33 LRR_1 Repeat 1 23 23 13.1 0.11 1 CL0022
Cotton_A_14156_CDS 702 972 701 974 PF00069.25 Pkinase Domain 2 260 264 144.4 4.1e-42 1 CL0016
Cotton_A_11912_CDS 128 188 127 188 PF04117.12 Mpv17_PMP22 Family 2 62 62 61.2 8.4e-17 1 No_clan
Cotton_A_14154_CDS 17 38 16 39 PF13516.6 LRR_6 Repeat 2 23 24 11.7 0.21 1 CL0022
Cotton_A_14154_CDS 409 672 408 675 PF00069.25 Pkinase Domain 2 253 264 136.0 1.5e-39 1 CL0016
Cotton_A_11159_CDS 186 389 185 395 PF00106.25 adh_short Domain 2 186 195 124.8 2.8e-36 1 CL0063
Cotton_A_07657_CDS 115 158 114 158 PF13639.6 zf-RING_2 Domain 2 44 44 50.3 2.2e-13 1 CL0229
Cotton_A_06082_CDS 6 256 6 256 PF00069.25 Pkinase Domain 1 264 264 263.5 1.8e-78 1 CL0016
Cotton_A_06082_CDS 1139 1168 1139 1169 PF02985.22 HEAT Repeat 1 30 31 20.3 0.00044 1 CL0020
Cotton_A_10208_CDS 122 277 100 294 PF12348.8 CLASP_N Family 48 207 227 28.7 8.7e-07 1 CL0020
Cotton_A_38252_CDS 79 164 79 173 PF05623.12 DUF789 Family 1 82 294 103.1 2.2e-29 1 No_clan
Cotton_A_20496_CDS 58 176 46 207 PF01925.19 TauE Family 3 112 236 43.3 3.4e-11 1 CL0292
Cotton_A_20496_CDS 312 416 310 429 PF01925.19 TauE Family 3 106 236 43.7 2.5e-11 1 CL0292
Cotton_A_33908_CDS 151 213 124 213 PF01477.23 PLAT Domain 48 117 117 22.4 0.00014 1 CL0321
Cotton_A_33908_CDS 227 895 226 895 PF00305.19 Lipoxygenase Domain 2 674 674 1036.7 0 1 No_clan
Cotton_A_17125_CDS 8 135 8 135 PF02365.15 NAM Family 1 126 126 130.9 4.8e-38 1 No_clan
Cotton_A_27316_CDS 108 337 108 338 PF02485.21 Branch Family 1 246 247 273.6 1.5e-81 1 CL0110
Cotton_A_16902_CDS 34 135 25 136 PF00072.24 Response_reg Domain 10 111 112 53.7 2e-14 1 CL0304
Cotton_A_26306_CDS 100 170 96 170 PF16135.5 Jas Family 5 76 76 70.3 1.1e-19 1 No_clan
Cotton_A_21117_CDS 206 277 152 280 PF00294.24 PfkB Family 222 294 302 59.2 4.1e-16 1 CL0118
Cotton_A_07593_CDS 42 170 38 170 PF01814.23 Hemerythrin Domain 5 131 131 44.4 2.4e-11 1 No_clan
Cotton_A_07593_CDS 593 753 592 754 PF01814.23 Hemerythrin Domain 2 130 131 30.4 5.2e-07 1 No_clan
Cotton_A_07593_CDS 937 1012 937 1013 PF05495.12 zf-CHY Domain 1 74 75 66.8 1.7e-18 1 No_clan
Cotton_A_07593_CDS 1065 1107 1064 1108 PF13639.6 zf-RING_2 Domain 2 43 44 29.1 8.9e-07 1 CL0229
Cotton_A_07593_CDS 1113 1170 1112 1170 PF14599.6 zinc_ribbon_6 Domain 2 59 59 84.9 2.8e-24 1 No_clan
Cotton_A_10939_CDS 34 180 16 194 PF00722.21 Glyco_hydro_16 Domain 20 166 177 142.9 7e-42 1 CL0004
Cotton_A_11101_CDS 6 32 5 33 PF00641.18 zf-RanBP Domain 3 29 30 25.4 6.2e-06 1 CL0167
Cotton_A_11101_CDS 49 77 48 79 PF00641.18 zf-RanBP Domain 2 28 30 21.3 0.00012 1 CL0167
Cotton_A_15551_CDS 89 347 89 347 PF00069.25 Pkinase Domain 1 264 264 252.5 4.1e-75 1 CL0016
Cotton_A_15551_CDS 395 455 392 456 PF13499.6 EF-hand_7 Domain 4 70 71 46.7 3.1e-12 1 CL0220
Cotton_A_15551_CDS 464 527 464 527 PF13499.6 EF-hand_7 Domain 1 71 71 52.3 5.7e-14 1 CL0220
Cotton_A_01680_CDS 15 83 15 104 PF01734.22 Patatin Family 1 60 204 40.5 3.3e-10 1 CL0323
Cotton_A_33314_CDS 31 485 30 488 PF00083.24 Sugar_tr Family 2 449 452 407.8 5.6e-122 1 CL0015
Cotton_A_34186_CDS 54 529 54 538 PF00221.19 Lyase_aromatic Family 1 457 464 511.8 1.6e-153 1 No_clan
Cotton_A_36236_CDS 131 193 128 194 PF13499.6 EF-hand_7 Domain 4 70 71 47.8 1.5e-12 1 CL0220
Cotton_A_08619_CDS 116 301 116 304 PF07816.11 DUF1645 Family 1 136 191 107.9 9.1e-31 1 No_clan
Cotton_A_29942_CDS 5 222 5 226 PF00009.27 GTP_EFTU Domain 1 190 194 182.8 5.1e-54 1 CL0023
Cotton_A_29942_CDS 248 313 248 315 PF03144.25 GTP_EFTU_D2 Domain 1 72 74 51.2 1.3e-13 1 CL0575
Cotton_A_29942_CDS 322 429 321 430 PF03143.17 GTP_EFTU_D3 Domain 2 111 112 132.6 7.1e-39 1 No_clan
Cotton_A_03846_CDS 33 238 33 238 PF00804.25 Syntaxin Domain 1 200 200 244.1 9.6e-73 1 CL0445
Cotton_A_03846_CDS 240 291 239 291 PF05739.19 SNARE Family 2 53 53 67.7 6.2e-19 1 No_clan
Cotton_A_24807_CDS 1 409 1 411 PF02458.15 Transferase Family 1 432 434 221.5 1.6e-65 1 CL0149
Cotton_A_11182_CDS 64 209 56 209 PF00177.21 Ribosomal_S7 Domain 13 149 149 127.8 2.4e-37 1 No_clan
Cotton_A_02201_CDS 48 329 45 329 PF00069.25 Pkinase Domain 6 264 264 248.4 7.7e-74 1 CL0016
Cotton_A_06891_CDS 175 466 165 466 PF04765.13 DUF616 Family 14 314 314 386.3 1.1e-115 1 No_clan
Cotton_A_04425_CDS 177 324 176 348 PF03031.18 NIF Family 2 131 156 92.6 2.1e-26 1 CL0137
Cotton_A_04425_CDS 410 461 401 461 PF12738.7 PTCB-BRCT Family 12 63 63 25.5 9.2e-06 1 CL0459
Cotton_A_38530_CDS 35 156 8 160 PF01026.21 TatD_DNase Domain 54 168 255 92.7 2.3e-26 1 CL0034
Cotton_A_18111_CDS 34 96 33 96 PF03732.17 Retrotrans_gag Family 2 66 96 40.8 2e-10 1 CL0523
Cotton_A_19950_CDS 48 158 48 161 PF00106.25 adh_short Domain 1 109 195 84.2 7.8e-24 1 CL0063
Cotton_A_36073_CDS 53 261 52 344 PF00069.25 Pkinase Domain 2 212 264 167.0 5e-49 1 CL0016
Cotton_A_07445_CDS 3 70 3 74 PF00240.23 ubiquitin Domain 1 68 72 49.2 3.2e-13 1 CL0072
Cotton_A_07445_CDS 174 296 173 296 PF09668.10 Asp_protease Family 2 124 124 185.2 3.3e-55 1 CL0129
Cotton_A_07445_CDS 391 422 390 425 PF00627.31 UBA Domain 3 34 37 37.1 2.1e-09 1 CL0214
Cotton_A_05160_CDS 71 229 70 230 PF00078.27 RVT_1 Family 2 221 222 113.8 8.1e-33 1 CL0027
Cotton_A_05160_CDS 293 387 293 387 PF17919.1 RT_RNaseH_2 Domain 1 100 100 120.7 2.1e-35 1 CL0219
Cotton_A_05160_CDS 501 555 500 557 PF17921.1 Integrase_H2C2 Domain 4 56 58 77.9 4.6e-22 1 CL0361
Cotton_A_05160_CDS 572 685 571 687 PF00665.26 rve Domain 2 117 119 53.9 1.8e-14 1 CL0219
Cotton_A_05160_CDS 875 928 874 929 PF00385.24 Chromo Domain 2 53 54 48.7 5e-13 1 CL0049
Cotton_A_23385_CDS 9 53 9 54 PF03107.16 C1_2 Domain 1 46 47 35.0 1.3e-08 1 CL0006
Cotton_A_13490_CDS 34 112 34 112 PF05922.16 Inhibitor_I9 Domain 1 82 82 55.2 8.6e-15 1 CL0570
Cotton_A_13490_CDS 133 583 132 583 PF00082.22 Peptidase_S8 Domain 2 298 298 147.6 4.7e-43 1 No_clan
Cotton_A_13490_CDS 638 733 638 734 PF17766.1 fn3_6 Domain 1 98 99 85.5 2.3e-24 1 CL0159
Cotton_A_35287_CDS 5 228 4 228 PF00195.19 Chal_sti_synt_N Domain 2 225 225 418.3 6.1e-126 1 CL0046
Cotton_A_35287_CDS 238 387 238 388 PF02797.15 Chal_sti_synt_C Domain 1 150 151 243.6 7.1e-73 1 CL0046
Cotton_A_26253_CDS 64 321 64 322 PF00149.28 Metallophos Domain 1 203 204 67.3 2.6e-18 1 CL0163
Cotton_A_08901_CDS 13 184 13 184 PF03152.14 UFD1 Family 1 173 173 269.9 6.4e-81 1 CL0402
Cotton_A_00080_CDS 214 263 212 263 PF00847.20 AP2 Domain 3 54 54 46.4 3.4e-12 1 CL0081
Cotton_A_31217_CDS 101 373 97 374 PF07714.17 Pkinase_Tyr Domain 6 258 259 148.6 1.9e-43 1 CL0016
Cotton_A_28145_CDS 194 846 194 846 PF00063.21 Myosin_head Domain 1 677 677 750.4 1.6e-225 1 CL0023
Cotton_A_38800_CDS 75 161 75 164 PF03101.15 FAR1 Domain 1 87 90 83.4 1.4e-23 1 CL0274
Cotton_A_38800_CDS 283 377 283 377 PF10551.9 MULE Domain 1 96 96 73.3 1.6e-20 1 CL0219
Cotton_A_38800_CDS 576 599 575 599 PF04434.17 SWIM Domain 17 40 40 19.8 0.00044 1 No_clan
Cotton_A_16958_CDS 14 109 14 110 PF13943.6 WPP Domain 1 98 99 119.8 5.4e-35 1 No_clan
Cotton_A_16958_CDS 212 231 210 232 PF13516.6 LRR_6 Repeat 4 23 24 12.9 0.091 1 CL0022
Cotton_A_16958_CDS 353 372 352 372 PF13516.6 LRR_6 Repeat 5 24 24 12.1 0.16 1 CL0022
Cotton_A_16958_CDS 380 400 378 401 PF13516.6 LRR_6 Repeat 3 23 24 12.7 0.099 1 CL0022
Cotton_A_16958_CDS 408 428 406 429 PF13516.6 LRR_6 Repeat 3 23 24 13.0 0.084 1 CL0022
Cotton_A_13924_CDS 19 135 18 139 PF02893.20 GRAM Domain 2 110 114 88.6 2.5e-25 1 CL0266
Cotton_A_01468_CDS 34 382 34 382 PF00282.19 Pyridoxal_deC Domain 1 375 375 361.5 4e-108 1 CL0061
Cotton_A_16138_CDS 118 219 118 220 PF02362.21 B3 Family 1 100 101 75.1 3.1e-21 1 CL0405
Cotton_A_16138_CDS 257 340 257 340 PF06507.13 Auxin_resp Family 1 83 83 78.1 4.6e-22 1 No_clan
Cotton_A_26404_CDS 104 160 93 166 PF12796.7 Ank_2 Repeat 25 74 83 36.0 7.6e-09 1 CL0465
Cotton_A_26404_CDS 176 223 171 224 PF13857.6 Ank_5 Repeat 8 55 56 37.0 2.9e-09 1 CL0465
Cotton_A_39350_CDS 104 116 102 117 PF00612.27 IQ Motif 3 15 21 17.0 0.0034 1 CL0220
Cotton_A_39350_CDS 145 162 144 163 PF00612.27 IQ Motif 2 19 21 15.4 0.012 1 CL0220
Cotton_A_39350_CDS 341 414 341 439 PF13178.6 DUF4005 Family 1 55 93 50.0 3.5e-13 1 No_clan
Cotton_A_05022_CDS 1 52 1 52 PF00281.19 Ribosomal_L5 Domain 3 57 57 67.6 8.7e-19 1 CL0652
Cotton_A_05022_CDS 56 154 56 154 PF00673.21 Ribosomal_L5_C Domain 1 94 94 72.9 1.8e-20 1 No_clan
Cotton_A_11787_CDS 78 242 76 245 PF00270.29 DEAD Domain 3 173 176 129.0 1.5e-37 1 CL0023
Cotton_A_11787_CDS 282 389 280 389 PF00271.31 Helicase_C Family 3 111 111 97.3 6.6e-28 1 CL0023
Cotton_A_20233_CDS 40 115 12 115 PF14368.6 LTP_2 Family 21 97 97 49.1 4.5e-13 1 CL0482
Cotton_A_17093_CDS 85 234 83 250 PF00069.25 Pkinase Domain 3 150 264 102.9 1.9e-29 1 CL0016
Cotton_A_17093_CDS 567 682 555 683 PF00069.25 Pkinase Domain 152 260 264 38.0 1.2e-09 1 CL0016
Cotton_A_22334_CDS 21 224 20 261 PF00557.24 Peptidase_M24 Domain 2 188 209 93.3 1.6e-26 1 No_clan
Cotton_A_34348_CDS 143 416 143 419 PF10225.9 NEMP Family 1 246 249 201.5 1.7e-59 1 No_clan
Cotton_A_34220_CDS 174 352 174 353 PF14543.6 TAXi_N Domain 1 177 178 189.4 6.4e-56 1 CL0129
Cotton_A_34220_CDS 379 530 379 531 PF14541.6 TAXi_C Domain 1 160 161 111.8 2.6e-32 1 CL0129
Cotton_A_06200_CDS 306 434 297 435 PF00271.31 Helicase_C Family 8 110 111 54.3 1.5e-14 1 CL0023
Cotton_A_06200_CDS 496 619 496 626 PF04408.23 HA2 Domain 1 100 108 71.3 7.3e-20 1 No_clan
Cotton_A_06200_CDS 658 734 657 734 PF07717.16 OB_NTP_bind Domain 2 83 83 56.5 2.7e-15 1 CL0021
Cotton_A_22814_CDS 225 258 225 258 PF12579.8 DUF3755 Family 1 34 34 67.4 5.9e-19 1 No_clan
Cotton_A_08231_CDS 109 161 108 161 PF14416.6 PMR5N Domain 2 53 53 79.7 1.5e-22 1 No_clan
Cotton_A_08231_CDS 162 452 162 453 PF13839.6 PC-Esterase Family 1 282 283 291.8 6.8e-87 1 CL0264
Cotton_A_37925_CDS 4 125 4 126 PF13456.6 RVT_3 Domain 1 123 124 59.3 3.1e-16 1 CL0219
Cotton_A_02383_CDS 20 80 4 83 PF03226.14 Yippee-Mis18 Domain 23 91 105 45.1 9.4e-12 1 CL0080
Cotton_A_30591_CDS 9 57 8 57 PF13041.6 PPR_2 Repeat 2 50 50 57.7 9.8e-16 1 CL0020
Cotton_A_30591_CDS 79 127 78 127 PF13041.6 PPR_2 Repeat 2 50 50 56.5 2.3e-15 1 CL0020
Cotton_A_30591_CDS 149 196 148 196 PF13041.6 PPR_2 Repeat 2 49 50 51.1 1.1e-13 1 CL0020
Cotton_A_30591_CDS 219 263 218 265 PF13041.6 PPR_2 Repeat 2 47 50 67.4 9.4e-19 1 CL0020
Cotton_A_30591_CDS 285 316 284 317 PF12854.7 PPR_1 Repeat 2 33 34 26.7 3.3e-06 1 CL0020
Cotton_A_30591_CDS 360 405 358 407 PF13041.6 PPR_2 Repeat 3 48 50 55.5 4.9e-15 1 CL0020
Cotton_A_04065_CDS 12 266 12 266 PF00069.25 Pkinase Domain 1 264 264 255.2 6.5e-76 1 CL0016
Cotton_A_04065_CDS 311 368 310 368 PF03822.14 NAF Domain 2 54 54 76.7 1.1e-21 1 CL0573
Cotton_A_13844_CDS 505 785 504 788 PF00069.25 Pkinase Domain 2 258 264 152.2 1.6e-44 1 CL0016
Cotton_A_05860_CDS 12 36 9 38 PF01535.20 PPR Family 5 29 31 11.2 0.35 1 CL0020
Cotton_A_05860_CDS 38 84 36 85 PF13041.6 PPR_2 Repeat 3 49 50 39.4 5e-10 1 CL0020
Cotton_A_05860_CDS 112 138 109 139 PF01535.20 PPR Family 4 30 31 20.6 0.00035 1 CL0020
Cotton_A_05860_CDS 140 169 140 170 PF01535.20 PPR Family 1 30 31 22.4 9.2e-05 1 CL0020
Cotton_A_05860_CDS 213 233 213 234 PF01535.20 PPR Family 4 24 31 12.8 0.11 1 CL0020
Cotton_A_05860_CDS 240 270 240 270 PF01535.20 PPR Family 1 31 31 23.9 3.1e-05 1 CL0020
Cotton_A_05860_CDS 337 385 337 386 PF13041.6 PPR_2 Repeat 1 49 50 39.3 5.4e-10 1 CL0020
Cotton_A_05860_CDS 413 437 412 439 PF01535.20 PPR Family 3 27 31 14.6 0.03 1 CL0020
Cotton_A_20034_CDS 153 254 151 255 PF03754.13 DUF313 Family 4 112 113 72.6 2.8e-20 1 CL0405
Cotton_A_39243_CDS 82 105 82 109 PF01535.20 PPR Family 1 24 31 12.5 0.14 1 CL0020
Cotton_A_39243_CDS 155 180 155 181 PF01535.20 PPR Family 5 30 31 14.0 0.046 1 CL0020
Cotton_A_39243_CDS 182 212 182 212 PF01535.20 PPR Family 1 31 31 37.8 1.2e-09 1 CL0020
Cotton_A_39243_CDS 242 274 241 275 PF13041.6 PPR_2 Repeat 2 34 50 36.3 4.6e-09 1 CL0020
Cotton_A_39243_CDS 275 303 275 305 PF01535.20 PPR Family 1 29 31 25.8 7.9e-06 1 CL0020
Cotton_A_39243_CDS 377 406 376 406 PF01535.20 PPR Family 2 31 31 23.4 4.6e-05 1 CL0020
Cotton_A_39243_CDS 448 473 447 476 PF01535.20 PPR Family 2 27 31 21.0 0.00027 1 CL0020
Cotton_A_39243_CDS 515 543 515 543 PF01535.20 PPR Family 3 31 31 12.9 0.099 1 CL0020
Cotton_A_39243_CDS 547 672 547 672 PF14432.6 DYW_deaminase Family 1 127 127 138.3 1.2e-40 1 CL0109
Cotton_A_10506_CDS 168 215 167 252 PF13671.6 AAA_33 Domain 2 46 143 28.1 1.9e-06 1 CL0023
Cotton_A_35833_CDS 118 137 118 137 PF07725.12 LRR_3 Repeat 1 20 20 28.6 8.1e-07 1 CL0022
Cotton_A_04682_CDS 40 178 23 178 PF04520.13 Senescence_reg Family 48 168 168 138.2 4.7e-40 1 No_clan
Cotton_A_20171_CDS 26 84 26 90 PF01918.21 Alba Family 1 60 67 47.7 1e-12 1 CL0441
Cotton_A_24224_CDS 176 200 176 202 PF01535.20 PPR Family 3 27 31 15.9 0.011 1 CL0020
Cotton_A_24224_CDS 302 361 302 364 PF13812.6 PPR_3 Repeat 1 60 63 36.0 5.3e-09 1 CL0020
Cotton_A_24224_CDS 384 429 384 433 PF13041.6 PPR_2 Repeat 1 46 50 54.2 1.2e-14 1 CL0020
Cotton_A_24224_CDS 433 449 430 449 PF01535.20 PPR Family 15 31 31 10.4 0.63 1 CL0020
Cotton_A_24224_CDS 455 484 454 484 PF01535.20 PPR Family 2 31 31 16.9 0.0052 1 CL0020
Cotton_A_24224_CDS 490 518 489 519 PF01535.20 PPR Family 2 30 31 21.7 0.00016 1 CL0020
Cotton_A_39641_CDS 47 174 41 175 PF00271.31 Helicase_C Family 7 110 111 67.7 9.8e-19 1 CL0023
Cotton_A_39641_CDS 238 325 238 351 PF04408.23 HA2 Domain 1 106 108 75.3 4.1e-21 1 No_clan
Cotton_A_39641_CDS 397 478 396 479 PF07717.16 OB_NTP_bind Domain 2 83 83 62.6 3.3e-17 1 CL0021
Cotton_A_12588_CDS 84 231 82 232 PF00160.21 Pro_isomerase Domain 3 157 158 112.0 3.2e-32 1 CL0475
Cotton_A_14453_CDS 30 228 30 228 PF00314.17 Thaumatin Domain 1 214 214 204.3 1.7e-60 1 CL0293
Cotton_A_12821_CDS 7 46 7 46 PF14382.6 ECR1_N Domain 1 38 38 45.5 4.8e-12 1 No_clan
Cotton_A_12821_CDS 100 141 96 141 PF10447.9 EXOSC1 Domain 68 109 109 46.0 6.5e-12 1 CL0021
Cotton_A_27182_CDS 59 156 42 157 PF02309.16 AUX_IAA Family 118 227 237 112.7 2.3e-32 1 CL0072
Cotton_A_05574_CDS 46 275 46 275 PF00230.20 MIP Family 1 227 227 281.8 4.2e-84 1 No_clan
Cotton_A_30117_CDS 295 410 294 411 PF00615.19 RGS Domain 2 117 118 48.0 1.3e-12 1 CL0272
Cotton_A_31470_CDS 86 140 85 145 PF00572.18 Ribosomal_L13 Family 44 98 125 49.8 3.7e-13 1 No_clan
Cotton_A_14376_CDS 4 214 4 215 PF00091.25 Tubulin Domain 1 196 197 238.5 7e-71 1 CL0566
Cotton_A_14376_CDS 264 393 264 395 PF03953.17 Tubulin_C Domain 1 124 126 153.4 3e-45 1 CL0442
Cotton_A_32706_CDS 67 222 66 222 PF02453.17 Reticulon Family 2 157 157 189.6 3.2e-56 1 CL0484
Cotton_A_32417_CDS 9 108 7 110 PF00085.20 Thioredoxin Domain 3 101 103 96.9 5.7e-28 1 CL0172
Cotton_A_03988_CDS 105 528 105 529 PF00854.21 PTR2 Family 1 394 395 332.2 3.7e-99 1 CL0015
Cotton_A_17760_CDS 93 269 82 269 PF00544.19 Pec_lyase_C Domain 37 211 211 86.2 2.2e-24 1 CL0268
Cotton_A_37998_CDS 41 260 38 261 PF03878.15 YIF1 Family 10 238 239 196.0 6.7e-58 1 CL0112
Cotton_A_04658_CDS 32 144 30 145 PF01426.18 BAH Domain 3 121 122 85.0 3.4e-24 1 No_clan
Cotton_A_20114_CDS 8 46 6 47 PF08263.12 LRRNT_2 Family 3 40 41 40.7 2.1e-10 1 No_clan
Cotton_A_20114_CDS 116 159 115 159 PF13855.6 LRR_8 Repeat 18 61 61 28.2 1.1e-06 1 CL0022
Cotton_A_20114_CDS 292 352 292 352 PF13855.6 LRR_8 Repeat 1 61 61 27.9 1.4e-06 1 CL0022
Cotton_A_20114_CDS 422 481 421 481 PF13855.6 LRR_8 Repeat 2 61 61 30.5 2.2e-07 1 CL0022
Cotton_A_20114_CDS 565 624 564 624 PF13855.6 LRR_8 Repeat 2 61 61 37.6 1.4e-09 1 CL0022
Cotton_A_20114_CDS 728 937 727 998 PF00069.25 Pkinase Domain 2 208 264 140.7 5.3e-41 1 CL0016
Cotton_A_32069_CDS 25 337 25 337 PF00657.22 Lipase_GDSL Family 1 200 200 69.8 2.9e-19 1 CL0264
Cotton_A_41094_CDS 65 109 62 123 PF00170.21 bZIP_1 Family 5 49 64 35.8 6.4e-09 1 CL0018
Cotton_A_37864_CDS 45 137 43 165 PF13837.6 Myb_DNA-bind_4 Domain 3 88 90 53.2 2.9e-14 1 CL0123
Cotton_A_11778_CDS 46 105 45 105 PF17181.4 EPF Family 2 53 53 77.2 7e-22 1 No_clan
Cotton_A_27019_CDS 26 73 26 73 PF00249.31 Myb_DNA-binding Domain 1 46 46 55.1 6.2e-15 1 CL0123
Cotton_A_27019_CDS 79 122 79 124 PF00249.31 Myb_DNA-binding Domain 1 44 46 56.1 3e-15 1 CL0123
Cotton_A_08080_CDS 67 326 67 327 PF00685.27 Sulfotransfer_1 Domain 1 266 267 219.5 5.4e-65 1 CL0023
Cotton_A_35063_CDS 4 61 4 63 PF00076.22 RRM_1 Domain 1 62 70 62.4 2.6e-17 1 CL0221
Cotton_A_35063_CDS 95 110 94 111 PF00098.23 zf-CCHC Domain 2 17 18 29.3 5.9e-07 1 CL0511
Cotton_A_25529_CDS 97 135 94 137 PF00364.22 Biotin_lipoyl Domain 5 42 73 26.5 4.1e-06 1 CL0105
Cotton_A_25529_CDS 159 190 157 190 PF00364.22 Biotin_lipoyl Domain 42 73 73 22.2 9.3e-05 1 CL0105
Cotton_A_25529_CDS 296 526 293 526 PF00198.23 2-oxoacid_dh Domain 7 233 233 250.0 1.9e-74 1 CL0149
Cotton_A_16369_CDS 17 57 8 64 PF09247.11 TBP-binding Domain 8 45 61 36.5 4.4e-09 1 No_clan
Cotton_A_16369_CDS 565 1135 565 1135 PF12157.8 DUF3591 Family 1 441 441 437.7 4.2e-131 1 CL0662
Cotton_A_16369_CDS 652 718 650 721 PF00240.23 ubiquitin Domain 3 68 72 33.5 2.6e-08 1 CL0072
Cotton_A_16369_CDS 1378 1397 1376 1407 PF15288.6 zf-CCHC_6 Domain 4 23 40 22.1 9.6e-05 1 CL0511
Cotton_A_16369_CDS 1766 1841 1766 1847 PF00439.25 Bromodomain Domain 1 75 84 65.3 4e-18 1 No_clan
Cotton_A_11202_CDS 96 153 95 154 PF02893.20 GRAM Domain 55 113 114 39.9 3.2e-10 1 CL0266
Cotton_A_02386_CDS 119 318 119 318 PF03145.16 Sina Family 1 200 200 263.5 1.4e-78 1 CL0389
Cotton_A_26061_CDS 271 381 260 394 PF00201.18 UDPGT Family 276 384 499 67.2 1.2e-18 1 CL0113
Cotton_A_06281_CDS 49 154 49 155 PF01453.24 B_lectin Domain 1 104 105 112.4 1.3e-32 1 No_clan
Cotton_A_06281_CDS 187 295 187 296 PF00954.20 S_locus_glycop Domain 1 110 111 88.8 3.2e-25 1 No_clan
Cotton_A_06281_CDS 320 379 317 379 PF08276.11 PAN_2 Domain 3 67 67 44.4 1.4e-11 1 CL0168
Cotton_A_06281_CDS 467 731 465 733 PF00069.25 Pkinase Domain 4 260 264 169.5 8.7e-50 1 CL0016
Cotton_A_06270_CDS 5 87 5 111 PF18052.1 Rx_N Domain 1 83 93 83.8 7.5e-24 1 No_clan
Cotton_A_06270_CDS 169 414 167 415 PF00931.22 NB-ARC Domain 3 251 252 200.6 2.4e-59 1 CL0023
Cotton_A_06215_CDS 124 298 121 299 PF03352.13 Adenine_glyco Family 4 176 177 205.2 6.3e-61 1 No_clan
Cotton_A_17528_CDS 208 301 208 301 PF07818.13 HCNGP Family 1 94 94 96.3 1.3e-27 1 No_clan
Cotton_A_21627_CDS 40 142 40 143 PF02362.21 B3 Family 1 100 101 96.6 6.4e-28 1 CL0405
Cotton_A_10132_CDS 2 66 1 75 PF00565.17 SNase Domain 21 87 108 60.7 1.6e-16 1 CL0049
Cotton_A_15619_CDS 89 260 88 260 PF02837.18 Glyco_hydro_2_N Domain 2 169 169 166.1 6.6e-49 1 CL0202
Cotton_A_15619_CDS 262 391 262 391 PF00703.21 Glyco_hydro_2 Domain 1 110 110 52.6 6.1e-14 1 CL0159
Cotton_A_15619_CDS 398 678 393 679 PF02836.17 Glyco_hydro_2_C Domain 6 301 302 322.1 3.1e-96 1 CL0058
Cotton_A_15619_CDS 686 779 686 779 PF16353.5 DUF4981 Family 1 87 87 51.9 8e-14 1 CL0159
Cotton_A_15619_CDS 811 1095 809 1095 PF02929.17 Bgal_small_N Domain 3 242 242 240.1 2.6e-71 1 CL0103
Cotton_A_37129_CDS 44 293 44 293 PF00141.23 peroxidase Domain 1 229 229 233.6 2.3e-69 1 CL0617
Cotton_A_16063_CDS 242 386 242 388 PF01764.25 Lipase_3 Family 1 140 142 116.7 7.3e-34 1 CL0028
Cotton_A_15246_CDS 49 82 45 82 PF00400.32 WD40 Repeat 6 38 38 26.5 8.1e-06 1 CL0186
Cotton_A_15246_CDS 325 362 323 362 PF00400.32 WD40 Repeat 5 38 38 19.0 0.0019 1 CL0186
Cotton_A_03493_CDS 55 311 53 311 PF00069.25 Pkinase Domain 3 264 264 245.4 6.4e-73 1 CL0016
Cotton_A_03493_CDS 357 417 356 419 PF13499.6 EF-hand_7 Domain 2 68 71 35.5 1e-08 1 CL0220
Cotton_A_03493_CDS 429 492 428 492 PF13499.6 EF-hand_7 Domain 2 71 71 52.0 7.3e-14 1 CL0220
Cotton_A_37193_CDS 367 415 365 415 PF00010.26 HLH Domain 3 53 53 26.1 6e-06 1 No_clan
Cotton_A_18311_CDS 78 125 78 126 PF13041.6 PPR_2 Repeat 1 48 50 43.5 2.7e-11 1 CL0020
Cotton_A_18311_CDS 210 242 209 242 PF13041.6 PPR_2 Repeat 2 34 50 38.1 1.3e-09 1 CL0020
Cotton_A_18311_CDS 243 269 243 272 PF01535.20 PPR Family 1 27 31 28.8 8.7e-07 1 CL0020
Cotton_A_18311_CDS 275 304 274 304 PF01535.20 PPR Family 2 31 31 26.8 3.7e-06 1 CL0020
Cotton_A_18311_CDS 373 419 372 421 PF13041.6 PPR_2 Repeat 2 48 50 44.2 1.6e-11 1 CL0020
Cotton_A_18311_CDS 447 471 446 473 PF01535.20 PPR Family 2 26 31 12.3 0.16 1 CL0020
Cotton_A_32873_CDS 3 74 3 74 PF00240.23 ubiquitin Domain 1 72 72 112.5 5.8e-33 1 CL0072
Cotton_A_32873_CDS 79 150 79 150 PF00240.23 ubiquitin Domain 1 72 72 112.5 5.8e-33 1 CL0072
Cotton_A_32873_CDS 155 226 155 226 PF00240.23 ubiquitin Domain 1 72 72 112.5 5.8e-33 1 CL0072
Cotton_A_32873_CDS 231 302 231 302 PF00240.23 ubiquitin Domain 1 72 72 112.5 5.8e-33 1 CL0072
Cotton_A_32873_CDS 307 378 307 378 PF00240.23 ubiquitin Domain 1 72 72 113.7 2.3e-33 1 CL0072
Cotton_A_32873_CDS 383 454 383 454 PF00240.23 ubiquitin Domain 1 72 72 113.7 2.3e-33 1 CL0072
Cotton_A_37622_CDS 25 114 25 114 PF00447.17 HSF_DNA-bind Domain 1 96 96 101.0 4.1e-29 1 CL0123
Cotton_A_27476_CDS 9 107 8 131 PF18052.1 Rx_N Domain 2 84 93 75.4 3.3e-21 1 No_clan
Cotton_A_27476_CDS 187 429 186 431 PF00931.22 NB-ARC Domain 2 250 252 163.8 4.1e-48 1 CL0023
Cotton_A_34134_CDS 79 215 78 237 PF05687.13 BES1_N Family 2 130 152 131.3 3.6e-38 1 No_clan
Cotton_A_34134_CDS 269 689 269 689 PF01373.17 Glyco_hydro_14 Domain 1 402 402 349.5 2.3e-104 1 CL0058
Cotton_A_27390_CDS 38 645 38 645 PF00012.20 HSP70 Family 1 599 599 879.9 7e-265 1 CL0108
Cotton_A_16247_CDS 46 165 46 165 PF17808.1 fn3_PAP Domain 1 118 118 151.5 9.3e-45 1 CL0159
Cotton_A_16247_CDS 174 276 169 277 PF16656.5 Pur_ac_phosph_N Domain 6 93 94 34.6 2.2e-08 1 CL0159
Cotton_A_16247_CDS 288 503 287 503 PF00149.28 Metallophos Domain 2 204 204 71.2 1.6e-19 1 CL0163
Cotton_A_16247_CDS 528 587 528 587 PF14008.6 Metallophos_C Domain 1 63 63 62.2 6.2e-17 1 No_clan
Cotton_A_08491_CDS 8 266 6 270 PF00459.25 Inositol_P Family 3 267 272 258.7 6.3e-77 1 CL0171
Cotton_A_30679_CDS 30 80 29 80 PF08100.11 Dimerisation Domain 2 51 51 66.5 1.5e-18 1 CL0123
Cotton_A_18441_CDS 256 298 251 306 PF00170.21 bZIP_1 Family 5 47 64 46.4 3.2e-12 1 CL0018
Cotton_A_30144_CDS 8 136 8 137 PF14226.6 DIOX_N Family 1 117 118 117.8 4.2e-34 1 CL0029
Cotton_A_30144_CDS 203 289 186 289 PF03171.20 2OG-FeII_Oxy Domain 15 101 101 74.9 5.8e-21 1 CL0029
Cotton_A_21393_CDS 30 156 29 156 PF14764.6 SPG48 Family 2 118 118 119.2 1.3e-34 1 No_clan
Cotton_A_20607_CDS 28 208 28 208 PF12710.7 HAD Family 1 188 188 67.7 1.7e-18 1 CL0137
Cotton_A_20607_CDS 306 402 288 408 PF01553.21 Acyltransferase Family 13 123 135 30.7 2e-07 1 CL0228
Cotton_A_32292_CDS 9 76 8 76 PF00690.26 Cation_ATPase_N Domain 2 69 69 64.8 4.1e-18 1 No_clan
Cotton_A_32292_CDS 132 344 128 344 PF00122.20 E1-E2_ATPase Family 5 181 181 163.9 2.7e-48 1 No_clan
Cotton_A_32292_CDS 361 740 360 740 PF00702.26 Hydrolase Domain 2 210 210 74.6 1.3e-20 1 CL0137
Cotton_A_32292_CDS 811 1037 810 1037 PF00689.21 Cation_ATPase_C Family 2 182 182 157.0 4.1e-46 1 No_clan
Cotton_A_20450_CDS 70 185 59 186 PF14226.6 DIOX_N Family 12 117 118 40.4 4.1e-10 1 CL0029
Cotton_A_12842_CDS 35 85 34 86 PF00847.20 AP2 Domain 2 53 54 50.9 1.3e-13 1 CL0081
Cotton_A_04851_CDS 21 67 16 68 PF04570.14 zf-FLZ Domain 7 53 54 80.0 6.1e-23 1 CL0175
Cotton_A_17768_CDS 561 691 561 692 PF00004.29 AAA Domain 1 131 132 130.3 5.8e-38 1 CL0023
Cotton_A_17768_CDS 713 749 713 757 PF17862.1 AAA_lid_3 Domain 1 37 45 43.3 2.3e-11 1 CL0671
Cotton_A_21212_CDS 71 142 71 151 PF02823.16 ATP-synt_DE_N Domain 1 72 80 58.4 4.7e-16 1 No_clan
Cotton_A_22995_CDS 4 59 3 61 PF07707.15 BACK Domain 50 101 103 23.3 5e-05 1 CL0033
Cotton_A_13825_CDS 6 103 6 104 PF03195.14 LOB Family 1 98 99 144.2 1.5e-42 1 No_clan
Cotton_A_05934_CDS 39 349 39 354 PF00067.22 p450 Domain 1 315 463 174.1 4.3e-51 1 No_clan
Cotton_A_05934_CDS 369 459 366 468 PF00067.22 p450 Domain 364 454 463 82.5 2.5e-23 1 No_clan
Cotton_A_07786_CDS 53 498 53 509 PF00067.22 p450 Domain 1 451 463 295.2 8e-88 1 No_clan
Cotton_A_07786_CDS 517 960 517 972 PF00067.22 p450 Domain 1 447 463 323.5 2.1e-96 1 No_clan
Cotton_A_21538_CDS 76 295 76 296 PF07859.13 Abhydrolase_3 Domain 1 210 211 178.8 1.2e-52 1 CL0028
Cotton_A_38505_CDS 106 168 105 172 PF09350.10 DUF1992 Domain 2 66 70 76.0 1.9e-21 1 No_clan
Cotton_A_04993_CDS 17 38 14 38 PF08513.11 LisH Domain 6 27 27 24.1 2.5e-05 1 CL0561
Cotton_A_04993_CDS 139 166 129 166 PF00400.32 WD40 Repeat 12 38 38 12.7 0.18 1 CL0186
Cotton_A_04993_CDS 177 208 170 208 PF00400.32 WD40 Repeat 8 38 38 23.7 6.2e-05 1 CL0186
Cotton_A_04993_CDS 218 252 213 252 PF00400.32 WD40 Repeat 6 38 38 16.5 0.012 1 CL0186
Cotton_A_04993_CDS 299 331 295 332 PF00400.32 WD40 Repeat 5 37 38 15.9 0.017 1 CL0186
Cotton_A_04993_CDS 381 415 378 415 PF00400.32 WD40 Repeat 4 37 38 15.0 0.036 1 CL0186
Cotton_A_19357_CDS 235 430 234 430 PF13532.6 2OG-FeII_Oxy_2 Domain 2 196 196 50.7 2.4e-13 1 CL0029
Cotton_A_27139_CDS 60 190 59 191 PF00134.23 Cyclin_N Domain 2 126 127 99.5 1.1e-28 1 CL0065
Cotton_A_27139_CDS 193 285 193 301 PF02984.19 Cyclin_C Domain 1 91 119 32.0 1.1e-07 1 CL0065
Cotton_A_20766_CDS 55 381 55 381 PF03405.14 FA_desaturase_2 Domain 1 326 326 503.4 2e-151 1 CL0044
Cotton_A_35999_CDS 28 97 10 99 PF02519.14 Auxin_inducible Family 21 88 90 61.7 5.7e-17 1 No_clan
Cotton_A_28061_CDS 15 214 15 221 PF01070.18 FMN_dh Domain 1 206 348 190.4 4.3e-56 1 CL0036
Cotton_A_39289_CDS 1 922 1 922 PF05695.12 DUF825 Family 565 1486 1486 2036.3 0 1 No_clan
Cotton_A_25180_CDS 3 54 1 55 PF13637.6 Ank_4 Repeat 3 54 55 28.8 1.3e-06 1 CL0465
Cotton_A_25180_CDS 104 164 104 164 PF13637.6 Ank_4 Repeat 1 55 55 46.0 5.4e-12 1 CL0465
Cotton_A_24631_CDS 20 120 20 120 PF12776.7 Myb_DNA-bind_3 Domain 1 96 96 42.6 9e-11 1 CL0123
Cotton_A_30538_CDS 7 458 7 464 PF00067.22 p450 Domain 1 456 463 303.7 2.1e-90 1 No_clan
Cotton_A_35286_CDS 5 228 4 228 PF00195.19 Chal_sti_synt_N Domain 2 225 225 418.3 6.1e-126 1 CL0046
Cotton_A_35286_CDS 238 387 238 388 PF02797.15 Chal_sti_synt_C Domain 1 150 151 243.6 7.1e-73 1 CL0046
Cotton_A_06453_CDS 9 203 6 206 PF03959.13 FSH1 Domain 3 207 212 151.7 2.2e-44 1 CL0028
Cotton_A_31242_CDS 9 284 9 285 PF01073.19 3Beta_HSD Family 1 279 280 262.8 2.7e-78 1 CL0063
Cotton_A_31242_CDS 380 535 380 538 PF02453.17 Reticulon Family 1 154 157 129.4 1.1e-37 1 CL0484
Cotton_A_24555_CDS 249 825 247 852 PF04097.14 Nic96 Family 3 581 621 361.6 7.7e-108 1 No_clan
Cotton_A_39264_CDS 61 356 53 357 PF01263.20 Aldose_epim Family 30 300 301 295.3 5e-88 1 CL0103
Cotton_A_30322_CDS 79 447 79 447 PF01266.24 DAO Domain 1 352 352 178.2 3.4e-52 1 CL0063
Cotton_A_30322_CDS 469 604 469 605 PF16901.5 DAO_C Family 1 125 126 129.2 7.8e-38 1 No_clan
Cotton_A_25599_CDS 59 78 58 78 PF00612.27 IQ Motif 2 21 21 26.1 4e-06 1 CL0220
Cotton_A_25599_CDS 81 154 80 155 PF02179.16 BAG Family 2 74 75 45.7 6.6e-12 1 No_clan
Cotton_A_05472_CDS 2 91 1 99 PF08661.11 Rep_fac-A_3 Domain 2 92 105 56.0 4.2e-15 1 CL0021
Cotton_A_32877_CDS 47 290 46 290 PF00141.23 peroxidase Domain 2 229 229 197.7 2.2e-58 1 CL0617
Cotton_A_26726_CDS 96 263 95 263 PF00005.27 ABC_tran Domain 2 137 137 59.8 4e-16 1 CL0023
Cotton_A_00737_CDS 44 333 44 333 PF08392.12 FAE1_CUT1_RppA Family 1 290 290 486.9 1.9e-146 1 CL0046
Cotton_A_00737_CDS 349 429 346 431 PF08541.10 ACP_syn_III_C Domain 11 88 90 43.6 2.5e-11 1 CL0046
Cotton_A_26227_CDS 60 138 59 140 PF00328.22 His_Phos_2 Family 4 89 383 24.9 1.2e-05 1 CL0071
Cotton_A_26227_CDS 201 343 196 348 PF00328.22 His_Phos_2 Family 240 378 383 50.0 2.8e-13 1 CL0071
Cotton_A_04947_CDS 83 397 83 397 PF14476.6 Chloroplast_duf Family 1 320 320 526.2 2.4e-158 1 No_clan
Cotton_A_15485_CDS 151 292 150 292 PF00588.19 SpoU_methylase Family 2 142 142 115.6 1.9e-33 1 CL0098
Cotton_A_07491_CDS 20 96 19 100 PF16987.5 KIX_2 Domain 2 78 82 126.8 2.3e-37 1 CL0589
Cotton_A_27147_CDS 2 89 1 103 PF00149.28 Metallophos Domain 2 79 204 27.7 3.3e-06 1 CL0163
Cotton_A_02584_CDS 155 393 153 396 PF00931.22 NB-ARC Domain 3 249 252 131.9 2.3e-38 1 CL0023
Cotton_A_12083_CDS 216 482 209 483 PF00561.20 Abhydrolase_1 Domain 25 255 257 50.1 2.9e-13 1 CL0028
Cotton_A_23849_CDS 1 67 1 68 PF03760.15 LEA_1 Family 4 70 71 76.6 1.8e-21 1 No_clan
Cotton_A_06739_CDS 31 80 30 80 PF08263.12 LRRNT_2 Family 2 41 41 38.9 7.7e-10 1 No_clan
Cotton_A_06739_CDS 241 299 240 300 PF13855.6 LRR_8 Repeat 2 60 61 27.6 1.8e-06 1 CL0022
Cotton_A_06739_CDS 436 491 431 491 PF13855.6 LRR_8 Repeat 6 61 61 31.1 1.5e-07 1 CL0022
Cotton_A_06739_CDS 504 564 503 564 PF13855.6 LRR_8 Repeat 2 61 61 32.7 4.5e-08 1 CL0022
Cotton_A_06739_CDS 678 736 676 736 PF13855.6 LRR_8 Repeat 3 61 61 32.0 7.7e-08 1 CL0022
Cotton_A_06739_CDS 748 807 747 807 PF13855.6 LRR_8 Repeat 2 61 61 30.8 1.8e-07 1 CL0022
Cotton_A_06739_CDS 898 953 897 953 PF13855.6 LRR_8 Repeat 6 61 61 34.5 1.3e-08 1 CL0022
Cotton_A_31929_CDS 171 479 171 479 PF02536.14 mTERF Family 1 314 314 349.5 1.3e-104 1 No_clan
Cotton_A_34732_CDS 28 123 27 124 PF01657.17 Stress-antifung Family 2 94 95 56.5 3.3e-15 1 No_clan
Cotton_A_10774_CDS 121 170 120 171 PF00847.20 AP2 Domain 2 53 54 52.8 3.5e-14 1 CL0081
Cotton_A_30031_CDS 61 253 53 253 PF00316.20 FBPase Domain 11 189 189 169.1 7.4e-50 1 CL0171
Cotton_A_25010_CDS 21 91 20 91 PF07983.13 X8 Domain 2 76 76 73.4 1.8e-20 1 No_clan
Cotton_A_39574_CDS 100 216 100 221 PF13460.6 NAD_binding_10 Domain 1 87 184 45.1 1e-11 1 CL0063
Cotton_A_39574_CDS 234 398 227 399 PF08547.12 CIA30 Family 7 159 160 147.6 3e-43 1 CL0202
Cotton_A_39574_CDS 412 511 401 511 PF13460.6 NAD_binding_10 Domain 91 184 184 49.9 3.3e-13 1 CL0063
Cotton_A_08322_CDS 32 120 32 123 PF02727.16 Cu_amine_oxidN2 Domain 1 84 87 69.3 2.5e-19 1 CL0047
Cotton_A_08322_CDS 129 227 129 227 PF02728.16 Cu_amine_oxidN3 Domain 1 101 101 79.9 1.5e-22 1 CL0047
Cotton_A_35290_CDS 54 309 54 309 PF00108.23 Thiolase_N Domain 1 260 260 263.4 1.9e-78 1 CL0046
Cotton_A_35290_CDS 318 440 316 440 PF02803.18 Thiolase_C Domain 3 123 123 161.7 5.4e-48 1 CL0046
Cotton_A_17240_CDS 387 506 386 533 PF00179.26 UQ_con Domain 2 111 140 82.3 2.5e-23 1 CL0208
Cotton_A_26851_CDS 105 150 103 151 PF04576.15 Zein-binding Family 3 48 92 67.0 1.4e-18 1 No_clan
Cotton_A_21464_CDS 156 270 156 271 PF03479.15 DUF296 Domain 1 105 107 94.1 6.2e-27 1 CL0615
Cotton_A_19019_CDS 59 128 59 129 PF00076.22 RRM_1 Domain 1 69 70 73.6 8.1e-21 1 CL0221
Cotton_A_19019_CDS 153 169 152 169 PF00098.23 zf-CCHC Domain 2 18 18 20.2 0.00044 1 CL0511
Cotton_A_20968_CDS 167 279 166 279 PF13640.6 2OG-FeII_Oxy_3 Domain 2 96 96 66.9 2.2e-18 1 CL0029
Cotton_A_19731_CDS 29 73 25 80 PF00170.21 bZIP_1 Family 5 49 64 36.3 4.6e-09 1 CL0018
Cotton_A_36711_CDS 35 118 35 118 PF02298.17 Cu_bind_like Domain 1 84 84 74.8 4e-21 1 CL0026
Cotton_A_04433_CDS 1 56 1 56 PF13499.6 EF-hand_7 Domain 10 71 71 33.2 5.1e-08 1 CL0220
Cotton_A_04433_CDS 65 131 65 131 PF13499.6 EF-hand_7 Domain 1 71 71 51.1 1.4e-13 1 CL0220
Cotton_A_14857_CDS 173 414 172 414 PF04788.12 DUF620 Family 2 243 243 409.7 3.4e-123 1 No_clan
Cotton_A_37813_CDS 275 302 270 305 PF13176.6 TPR_7 Repeat 6 33 36 17.0 0.0043 1 CL0020
Cotton_A_37813_CDS 434 509 433 509 PF13424.6 TPR_12 Repeat 2 77 77 41.4 1.3e-10 1 CL0020
Cotton_A_37813_CDS 529 551 522 553 PF13181.6 TPR_8 Repeat 10 32 34 16.0 0.0098 1 CL0020
Cotton_A_37813_CDS 604 672 601 677 PF13424.6 TPR_12 Repeat 4 72 77 41.7 1e-10 1 CL0020
Cotton_A_27227_CDS 51 133 49 190 PF03634.13 TCP Family 3 84 156 96.1 3.1e-27 1 No_clan
Cotton_A_25717_CDS 26 155 10 160 PF00071.22 Ras Domain 21 155 162 142.1 1.2e-41 1 CL0023
Cotton_A_25717_CDS 152 192 143 193 PF01501.20 Glyco_transf_8 Family 213 255 256 32.2 8e-08 1 CL0110
Cotton_A_07934_CDS 74 179 71 189 PF12146.8 Hydrolase_4 Family 4 111 239 28.6 7.5e-07 1 CL0028
Cotton_A_08681_CDS 51 108 51 108 PF08246.12 Inhibitor_I29 Domain 1 58 58 65.6 3.9e-18 1 No_clan
Cotton_A_08681_CDS 137 354 137 354 PF00112.23 Peptidase_C1 Domain 1 218 218 285.1 4.8e-85 1 CL0125
Cotton_A_08681_CDS 388 435 388 435 PF00396.18 Granulin Family 1 42 42 40.4 2.8e-10 1 No_clan
Cotton_A_08847_CDS 85 209 85 210 PF13837.6 Myb_DNA-bind_4 Domain 1 89 90 67.7 8.7e-19 1 CL0123
Cotton_A_05581_CDS 44 124 42 133 PF00686.19 CBM_20 Family 3 87 97 65.9 2.3e-18 1 CL0369
Cotton_A_12644_CDS 23 113 22 113 PF00428.19 Ribosomal_60s Family 2 88 88 99.7 1.1e-28 1 No_clan
Cotton_A_17201_CDS 77 275 75 288 PF00069.25 Pkinase Domain 4 198 264 175.0 1.8e-51 1 CL0016
Cotton_A_27529_CDS 96 229 88 237 PF00106.25 adh_short Domain 46 183 195 77.9 6.9e-22 1 CL0063
Cotton_A_21806_CDS 1 155 1 155 PF00407.19 Bet_v_1 Domain 1 151 151 89.9 1.5e-25 1 CL0209
Cotton_A_33525_CDS 73 377 72 377 PF06325.13 PrmA Family 2 296 296 248.9 7.1e-74 1 CL0063
Cotton_A_01543_CDS 23 333 23 335 PF00657.22 Lipase_GDSL Family 1 196 200 52.1 7.9e-14 1 CL0264
Cotton_A_08226_CDS 152 204 152 204 PF11250.8 FAF Family 1 54 54 74.6 5.3e-21 1 No_clan
Cotton_A_11837_CDS 142 227 114 228 PF09405.10 Btz Domain 30 129 130 69.1 4.1e-19 1 No_clan
Cotton_A_17724_CDS 10 75 4 75 PF02798.20 GST_N Domain 11 76 76 58.8 4.9e-16 1 CL0172
Cotton_A_17724_CDS 129 196 119 196 PF00043.25 GST_C Domain 27 93 93 37.4 2.2e-09 1 CL0497
Cotton_A_17724_CDS 259 367 259 367 PF00647.19 EF1G Domain 1 107 107 142.8 3.5e-42 1 No_clan
Cotton_A_24692_CDS 281 466 277 474 PF05770.11 Ins134_P3_kin Domain 7 190 201 103.0 1.5e-29 1 CL0179
Cotton_A_20832_CDS 53 195 23 202 PF00117.28 GATase Domain 33 175 190 59.5 3.5e-16 1 CL0014
Cotton_A_31801_CDS 2 66 1 66 PF13456.6 RVT_3 Domain 59 124 124 32.3 7.3e-08 1 CL0219
Cotton_A_00910_CDS 172 358 165 359 PF04389.17 Peptidase_M28 Family 6 197 198 122.4 1.8e-35 1 CL0035
Cotton_A_35198_CDS 12 139 12 139 PF02365.15 NAM Family 1 126 126 132.2 1.9e-38 1 No_clan
Cotton_A_38188_CDS 6 72 3 76 PF16543.5 DFRP_C Domain 10 68 89 33.1 6.1e-08 1 No_clan
Cotton_A_19493_CDS 4 49 3 50 PF02268.16 TFIIA_gamma_N Domain 2 47 48 74.6 4.5e-21 1 No_clan
Cotton_A_19493_CDS 1125 1325 1117 1326 PF01326.19 PPDK_N Family 135 309 328 70.3 1.7e-19 1 CL0179
Cotton_A_31110_CDS 1 120 1 122 PF00833.18 Ribosomal_S17e Family 1 120 122 200.2 7.5e-60 1 No_clan
Cotton_A_06562_CDS 54 207 53 216 PF01595.20 DUF21 Domain 2 152 176 126.1 1.2e-36 1 No_clan
Cotton_A_06562_CDS 256 313 256 315 PF00571.28 CBS Domain 1 55 57 23.6 5.4e-05 1 No_clan
Cotton_A_06562_CDS 324 379 324 380 PF00571.28 CBS Domain 1 56 57 24.1 3.8e-05 1 No_clan
Cotton_A_06562_CDS 401 505 400 506 PF03471.17 CorC_HlyC Domain 2 80 81 75.7 2.2e-21 1 No_clan
Cotton_A_04589_CDS 1 57 1 58 PF04783.12 DUF630 Family 1 57 59 73.5 1.1e-20 1 No_clan
Cotton_A_04589_CDS 273 578 271 579 PF04782.12 DUF632 Family 3 309 310 315.2 4.6e-94 1 No_clan
Cotton_A_20967_CDS 3 36 3 37 PF04419.14 4F5 Family 1 37 38 24.2 4.5e-05 1 CL0361
Cotton_A_20967_CDS 39 76 39 76 PF12907.7 zf-met2 Family 1 38 38 70.5 9.2e-20 1 CL0361
Cotton_A_11773_CDS 7 183 4 183 PF04525.12 LOR Domain 4 187 187 189.3 4.9e-56 1 CL0395
Cotton_A_38294_CDS 129 214 129 214 PF01985.21 CRS1_YhbY Domain 1 84 84 71.5 4.9e-20 1 No_clan
Cotton_A_38294_CDS 249 331 249 375 PF01985.21 CRS1_YhbY Domain 1 80 84 33.1 4.6e-08 1 No_clan
Cotton_A_38294_CDS 549 635 545 648 PF00931.22 NB-ARC Domain 3 96 252 33.6 2.3e-08 1 CL0023
Cotton_A_22738_CDS 5 266 4 269 PF01459.22 Porin_3 Family 2 267 270 213.4 4.1e-63 1 CL0193
Cotton_A_35230_CDS 5 59 4 60 PF13855.6 LRR_8 Repeat 6 60 61 29.1 6.2e-07 1 CL0022
Cotton_A_35230_CDS 174 406 172 479 PF00069.25 Pkinase Domain 3 212 264 146.3 1e-42 1 CL0016
Cotton_A_20773_CDS 9 191 7 191 PF00227.26 Proteasome Domain 3 190 190 149.1 1e-43 1 CL0052
Cotton_A_17573_CDS 41 98 41 98 PF08246.12 Inhibitor_I29 Domain 1 58 58 67.7 8.7e-19 1 No_clan
Cotton_A_17573_CDS 125 341 125 341 PF00112.23 Peptidase_C1 Domain 1 218 218 281.6 5.4e-84 1 CL0125
Cotton_A_24245_CDS 10 94 1 94 PF14368.6 LTP_2 Family 15 97 97 45.9 4.4e-12 1 CL0482
Cotton_A_31768_CDS 9 149 7 150 PF04970.13 LRAT Domain 3 126 127 75.1 5.8e-21 1 CL0125
Cotton_A_25085_CDS 191 444 191 444 PF04646.12 DUF604 Family 1 256 256 341.8 2.2e-102 1 CL0110
Cotton_A_35926_CDS 19 70 18 70 PF00847.20 AP2 Domain 2 54 54 53.3 2.3e-14 1 CL0081
Cotton_A_18061_CDS 309 472 287 478 PF11510.8 FA_FANCE Family 89 254 262 46.8 2.4e-12 1 No_clan
Cotton_A_38053_CDS 13 348 12 348 PF03214.13 RGP Family 2 342 342 588.1 5.3e-177 1 CL0110
Cotton_A_05213_CDS 65 210 65 211 PF00675.20 Peptidase_M16 Family 1 148 149 134.4 2.9e-39 1 CL0094
Cotton_A_05213_CDS 222 400 216 402 PF05193.21 Peptidase_M16_C Domain 7 181 183 105.8 2.6e-30 1 CL0094
Cotton_A_11836_CDS 231 400 231 401 PF16994.5 Glyco_trans_4_5 Family 1 170 171 242.1 2.4e-72 1 CL0113
Cotton_A_11836_CDS 560 617 530 617 PF00534.20 Glycos_transf_1 Family 62 119 172 36.7 2.9e-09 1 CL0113
Cotton_A_29119_CDS 77 480 77 481 PF01134.22 GIDA Family 1 391 392 496.7 4.9e-149 1 CL0063
Cotton_A_29119_CDS 484 696 483 696 PF13932.6 GIDA_assoc Domain 2 210 210 237.8 1.4e-70 1 No_clan
Cotton_A_37387_CDS 15 43 14 45 PF07647.17 SAM_2 Domain 4 32 66 28.9 9.2e-07 1 CL0003
Cotton_A_18568_CDS 32 89 13 101 PF06246.12 Isy1 Family 145 202 255 35.1 1e-08 1 No_clan
Cotton_A_28035_CDS 19 81 17 81 PF00125.24 Histone Domain 69 131 131 75.1 6.4e-21 1 CL0012
Cotton_A_32313_CDS 46 220 46 220 PF14543.6 TAXi_N Domain 1 178 178 115.7 2.6e-33 1 CL0129
Cotton_A_32313_CDS 247 406 247 407 PF14541.6 TAXi_C Domain 1 160 161 175.5 6.6e-52 1 CL0129
Cotton_A_10427_CDS 148 242 148 242 PF04504.14 DUF573 Family 1 95 95 125.6 8.9e-37 1 CL0123
Cotton_A_33084_CDS 86 247 86 248 PF01764.25 Lipase_3 Family 1 141 142 132.4 1e-38 1 CL0028
Cotton_A_03139_CDS 8 36 4 36 PF14364.6 DUF4408 Family 5 33 33 30.3 2.5e-07 1 No_clan
Cotton_A_03139_CDS 219 248 219 250 PF05553.11 DUF761 Family 1 30 36 50.9 7.7e-14 1 No_clan
Cotton_A_10958_CDS 87 310 87 312 PF07859.13 Abhydrolase_3 Domain 1 209 211 168.8 1.4e-49 1 CL0028
Cotton_A_02511_CDS 17 194 15 202 PF00224.21 PK Family 3 183 348 215.0 1.3e-63 1 CL0151
Cotton_A_37143_CDS 121 170 120 171 PF00847.20 AP2 Domain 2 53 54 46.3 3.6e-12 1 CL0081
Cotton_A_03338_CDS 9 76 9 77 PF01302.25 CAP_GLY Domain 1 64 65 60.8 9.3e-17 1 CL0010
Cotton_A_00965_CDS 12 106 12 106 PF01247.18 Ribosomal_L35Ae Domain 1 95 95 152.8 2.1e-45 1 CL0575
Cotton_A_24709_CDS 80 144 80 147 PF16209.5 PhoLip_ATPase_N Family 1 64 67 83.3 7.2e-24 1 No_clan
Cotton_A_24709_CDS 179 422 175 428 PF00122.20 E1-E2_ATPase Family 6 169 181 32.6 5.2e-08 1 No_clan
Cotton_A_24709_CDS 566 647 547 651 PF13246.6 Cation_ATPase Family 16 85 91 33.0 4.8e-08 1 CL0137
Cotton_A_24709_CDS 914 1153 914 1154 PF16212.5 PhoLip_ATPase_C Family 1 248 249 241.8 8.9e-72 1 No_clan
Cotton_A_02017_CDS 50 506 49 506 PF00083.24 Sugar_tr Family 2 452 452 298.4 9e-89 1 CL0015
Cotton_A_15260_CDS 15 66 2 242 PF00850.19 Hist_deacetyl Domain 75 127 307 29.8 4e-07 1 CL0302
Cotton_A_15260_CDS 131 207 94 207 PF00154.21 RecA Family 189 263 263 73.2 2.3e-20 1 CL0023
Cotton_A_05308_CDS 204 421 203 423 PF06775.14 Seipin Family 2 195 197 131.7 3.6e-38 1 No_clan
Cotton_A_10106_CDS 26 338 25 338 PF09724.9 Dcc1 Family 2 333 333 295.7 4.7e-88 1 No_clan
Cotton_A_07397_CDS 124 209 124 212 PF03088.16 Str_synth Family 1 86 89 84.7 3.5e-24 1 CL0186
Cotton_A_16525_CDS 188 371 176 394 PF00232.18 Glyco_hydro_1 Domain 63 229 453 115.4 2.2e-33 1 CL0058
Cotton_A_16525_CDS 392 539 388 542 PF00232.18 Glyco_hydro_1 Domain 282 450 453 82.5 2.1e-23 1 CL0058
Cotton_A_22734_CDS 63 170 60 172 PF00651.31 BTB Domain 4 109 111 43.6 2.9e-11 1 CL0033
Cotton_A_22734_CDS 262 347 260 347 PF02135.16 zf-TAZ Family 3 75 75 40.2 3.4e-10 1 No_clan
Cotton_A_07356_CDS 98 258 98 258 PF14299.6 PP2 Family 1 146 146 157.6 2.1e-46 1 No_clan
Cotton_A_00662_CDS 37 104 33 106 PF13499.6 EF-hand_7 Domain 6 69 71 32.5 8.7e-08 1 CL0220
Cotton_A_15102_CDS 59 465 23 468 PF00083.24 Sugar_tr Family 44 445 452 145.7 1.9e-42 1 CL0015
Cotton_A_03426_CDS 206 262 206 262 PF03106.15 WRKY Domain 1 59 59 90.1 7.8e-26 1 CL0274
Cotton_A_03426_CDS 371 428 371 428 PF03106.15 WRKY Domain 1 59 59 87.2 6.2e-25 1 CL0274
Cotton_A_37119_CDS 7 130 7 130 PF00241.20 Cofilin_ADF Domain 1 121 121 118.4 1.5e-34 1 CL0092
Cotton_A_19203_CDS 15 136 15 140 PF04857.20 CAF1 Family 1 125 319 40.7 1.6e-10 1 CL0219
Cotton_A_09348_CDS 3 58 1 109 PF00201.18 UDPGT Family 326 381 499 27.8 1e-06 1 CL0113
Cotton_A_37800_CDS 70 92 69 93 PF12171.8 zf-C2H2_jaz Family 2 24 27 24.7 2e-05 1 CL0361
Cotton_A_37338_CDS 17 253 15 254 PF13561.6 adh_short_C2 Domain 6 231 234 133.2 1.1e-38 1 CL0063
Cotton_A_16972_CDS 2 35 1 36 PF04927.12 SMP Family 25 58 59 21.2 0.00029 1 No_clan
Cotton_A_16972_CDS 43 99 43 101 PF04927.12 SMP Family 1 57 59 62.9 2.8e-17 1 No_clan
Cotton_A_05278_CDS 106 231 106 245 PF14299.6 PP2 Family 1 122 146 101.5 4.1e-29 1 No_clan
Cotton_A_31261_CDS 131 314 131 317 PF02826.19 2-Hacid_dh_C Domain 1 175 178 96.6 1.1e-27 1 CL0063
Cotton_A_23919_CDS 2 232 2 243 PF06105.12 Aph-1 Family 1 217 231 202.0 8.8e-60 1 CL0472
Cotton_A_14514_CDS 6 159 5 159 PF08534.10 Redoxin Domain 2 147 147 117.9 2.9e-34 1 CL0172
Cotton_A_14977_CDS 25 88 24 99 PF13837.6 Myb_DNA-bind_4 Domain 2 74 90 39.2 6.6e-10 1 CL0123
Cotton_A_14977_CDS 426 516 425 517 PF13837.6 Myb_DNA-bind_4 Domain 2 89 90 68.0 6.8e-19 1 CL0123
Cotton_A_11603_CDS 47 233 47 234 PF00485.18 PRK Domain 1 196 197 166.9 4.3e-49 1 CL0023
Cotton_A_11603_CDS 263 464 237 464 PF14681.6 UPRTase Domain 3 207 207 245.7 3e-73 1 CL0533
Cotton_A_20664_CDS 75 125 74 126 PF00847.20 AP2 Domain 2 53 54 50.1 2.4e-13 1 CL0081
Cotton_A_33406_CDS 41 352 40 354 PF00657.22 Lipase_GDSL Family 2 198 200 74.6 1e-20 1 CL0264
Cotton_A_05850_CDS 8 68 7 69 PF03931.15 Skp1_POZ Domain 2 62 63 64.4 7.6e-18 1 CL0033
Cotton_A_05850_CDS 113 160 113 160 PF01466.19 Skp1 Domain 1 48 48 63.0 2.1e-17 1 No_clan
Cotton_A_16739_CDS 113 176 110 181 PF08491.10 SE Family 33 96 276 71.6 5.5e-20 1 CL0063
Cotton_A_16739_CDS 178 256 176 262 PF08491.10 SE Family 190 267 276 93.4 1.2e-26 1 CL0063
Cotton_A_26577_CDS 69 430 68 431 PF01566.18 Nramp Family 2 357 358 401.5 2.8e-120 1 CL0062
Cotton_A_11458_CDS 66 107 65 112 PF00646.33 F-box Domain 2 42 48 22.1 0.0001 1 CL0271
Cotton_A_11458_CDS 243 266 243 267 PF13516.6 LRR_6 Repeat 1 23 24 17.6 0.0027 1 CL0022
Cotton_A_11458_CDS 480 502 479 503 PF13516.6 LRR_6 Repeat 2 23 24 11.8 0.2 1 CL0022
Cotton_A_11458_CDS 562 582 559 582 PF13516.6 LRR_6 Repeat 4 24 24 14.9 0.02 1 CL0022
Cotton_A_07350_CDS 186 623 186 623 PF11904.8 GPCR_chapero_1 Domain 1 307 307 341.4 5.1e-102 1 No_clan
Cotton_A_26206_CDS 52 82 50 88 PF01494.19 FAD_binding_3 Family 3 33 349 27.5 1.7e-06 1 CL0063
Cotton_A_32021_CDS 8 281 8 289 PF01370.21 Epimerase Family 1 230 241 68.7 5e-19 1 CL0063
Cotton_A_08945_CDS 22 440 22 444 PF01373.17 Glyco_hydro_14 Domain 1 398 402 394.2 6.2e-118 1 CL0058
Cotton_A_05176_CDS 17 122 5 122 PF02788.16 RuBisCO_large_N Domain 17 120 120 130.3 4e-38 1 No_clan
Cotton_A_03109_CDS 118 161 117 161 PF13639.6 zf-RING_2 Domain 2 44 44 53.4 2.4e-14 1 CL0229
Cotton_A_25089_CDS 108 354 106 400 PF00481.21 PP2C Family 3 236 258 224.0 2.5e-66 1 CL0238
Cotton_A_01713_CDS 12 79 11 81 PF00111.27 Fer2 Domain 2 76 78 31.4 1.4e-07 1 CL0486
Cotton_A_01713_CDS 90 176 90 177 PF01799.20 Fer2_2 Domain 1 75 76 81.5 3.3e-23 1 CL0486
Cotton_A_13769_CDS 38 312 36 313 PF01095.19 Pectinesterase Family 3 297 298 254.8 6.9e-76 1 CL0268
Cotton_A_07113_CDS 55 138 55 139 PF14547.6 Hydrophob_seed Domain 1 84 85 95.3 1.9e-27 1 CL0482
Cotton_A_19197_CDS 147 415 147 418 PF00069.25 Pkinase Domain 1 260 264 159.9 7.8e-47 1 CL0016
Cotton_A_27192_CDS 38 195 38 234 PF04548.16 AIG1 Domain 1 157 212 116.7 8.5e-34 1 CL0023
Cotton_A_12414_CDS 21 106 21 106 PF07911.13 DUF1677 Family 1 89 89 122.1 9.2e-36 1 No_clan
Cotton_A_24694_CDS 32 492 32 493 PF00067.22 p450 Domain 1 462 463 326.3 3e-97 1 No_clan
Cotton_A_31344_CDS 2 241 1 243 PF00067.22 p450 Domain 222 461 463 157.7 4e-46 1 No_clan
Cotton_A_41143_CDS 11 40 5 41 PF00400.32 WD40 Repeat 10 37 38 15.2 0.031 1 CL0186
Cotton_A_41143_CDS 58 92 54 92 PF00400.32 WD40 Repeat 5 38 38 18.9 0.002 1 CL0186
Cotton_A_41143_CDS 103 140 102 140 PF00400.32 WD40 Repeat 2 38 38 29.2 1.1e-06 1 CL0186
Cotton_A_41143_CDS 148 181 144 181 PF00400.32 WD40 Repeat 5 37 38 20.0 0.00093 1 CL0186
Cotton_A_34790_CDS 212 265 212 265 PF11250.8 FAF Family 1 54 54 63.3 1.8e-17 1 No_clan
Cotton_A_00013_CDS 23 204 6 226 PF00378.20 ECH_1 Domain 20 192 251 68.4 5.8e-19 1 CL0127
Cotton_A_04653_CDS 3 209 1 211 PF02230.16 Abhydrolase_2 Domain 13 215 217 174.3 3e-51 1 CL0028
Cotton_A_13854_CDS 83 186 83 186 PF03168.13 LEA_2 Domain 1 101 101 32.6 8.7e-08 1 CL0159
Cotton_A_19480_CDS 308 526 307 537 PF02902.19 Peptidase_C48 Domain 2 199 216 121.3 5e-35 1 CL0125
Cotton_A_03552_CDS 246 313 245 316 PF00076.22 RRM_1 Domain 2 67 70 60.1 1.3e-16 1 CL0221
Cotton_A_03552_CDS 327 389 326 393 PF00076.22 RRM_1 Domain 2 60 70 23.3 4.2e-05 1 CL0221
Cotton_A_03552_CDS 423 489 423 491 PF00076.22 RRM_1 Domain 1 67 70 37.8 1.2e-09 1 CL0221
Cotton_A_09519_CDS 312 415 309 420 PF01501.20 Glyco_transf_8 Family 4 125 256 32.4 6.6e-08 1 CL0110
Cotton_A_02366_CDS 10 136 10 137 PF02365.15 NAM Family 1 125 126 127.6 5.3e-37 1 No_clan
Cotton_A_31980_CDS 3 313 3 313 PF01112.18 Asparaginase_2 Domain 1 306 306 351.5 3.3e-105 1 CL0052
Cotton_A_00089_CDS 248 402 248 403 PF05131.14 Pep3_Vps18 Family 1 148 149 133.6 4.5e-39 1 No_clan
Cotton_A_00089_CDS 602 748 592 751 PF00637.20 Clathrin Family 11 140 143 48.3 9.4e-13 1 CL0020
Cotton_A_34162_CDS 43 131 40 134 PF12796.7 Ank_2 Repeat 1 79 83 48.0 1.4e-12 1 CL0465
Cotton_A_34162_CDS 169 398 157 398 PF07714.17 Pkinase_Tyr Domain 23 259 259 152.0 1.7e-44 1 CL0016
Cotton_A_35452_CDS 78 251 78 251 PF06351.11 Allene_ox_cyc Family 1 175 175 329.9 3.1e-99 1 CL0650
Cotton_A_22762_CDS 62 118 55 146 PF03796.15 DnaB_C Domain 15 67 255 24.6 1.3e-05 1 CL0023
Cotton_A_22762_CDS 124 300 123 301 PF06068.13 TIP49 Domain 172 350 351 284.3 1.4e-84 1 CL0023
Cotton_A_22762_CDS 306 371 306 371 PF17856.1 TIP49_C Domain 1 66 66 93.0 9.1e-27 1 CL0671
Cotton_A_01229_CDS 11 89 10 89 PF18265.1 Nas2_N Domain 2 79 79 78.9 2e-22 1 No_clan
Cotton_A_01229_CDS 139 204 120 205 PF13180.6 PDZ_2 Domain 16 80 82 27.5 2.9e-06 1 CL0466
Cotton_A_03030_CDS 10 90 9 121 PF14226.6 DIOX_N Family 2 79 118 41.3 2.2e-10 1 CL0029
Cotton_A_03030_CDS 172 261 157 263 PF03171.20 2OG-FeII_Oxy Domain 8 99 101 53.8 2.1e-14 1 CL0029
Cotton_A_33054_CDS 442 753 442 753 PF04091.12 Sec15 Family 1 316 316 247.4 2.3e-73 1 CL0295
Cotton_A_19474_CDS 438 646 437 647 PF03181.15 BURP Family 2 214 215 202.2 7.2e-60 1 No_clan
Cotton_A_05666_CDS 33 101 31 103 PF01363.21 FYVE Domain 3 66 68 61.3 7e-17 1 CL0390
Cotton_A_05666_CDS 405 653 374 664 PF00118.24 Cpn60_TCP1 Family 136 374 491 108.0 4.6e-31 1 No_clan
Cotton_A_05666_CDS 1584 1750 1576 1753 PF01504.18 PIP5K Family 10 168 274 119.1 2e-34 1 CL0016
Cotton_A_13608_CDS 8 506 4 508 PF04506.13 Rft-1 Family 5 509 511 442.3 2.4e-132 1 CL0222
Cotton_A_00349_CDS 29 370 27 371 PF05056.12 DUF674 Family 58 448 449 216.2 7.5e-64 1 No_clan
Cotton_A_09677_CDS 142 522 142 522 PF03514.14 GRAS Family 1 374 374 371.9 3.2e-111 1 CL0063
Cotton_A_32075_CDS 35 504 35 509 PF00067.22 p450 Domain 1 457 463 307.0 2.2e-91 1 No_clan
Cotton_A_12110_CDS 19 104 11 104 PF14368.6 LTP_2 Family 7 97 97 38.8 7.4e-10 1 CL0482
Cotton_A_21485_CDS 65 107 64 107 PF13639.6 zf-RING_2 Domain 2 44 44 47.4 1.7e-12 1 CL0229
Cotton_A_05284_CDS 61 324 59 325 PF03381.15 CDC50 Family 3 279 280 272.1 5.6e-81 1 No_clan
Cotton_A_11824_CDS 81 142 21 142 PF14510.6 ABC_trans_N Domain 30 81 81 36.1 7.3e-09 1 No_clan
Cotton_A_11824_CDS 167 351 167 353 PF00005.27 ABC_tran Domain 1 135 137 53.6 3.3e-14 1 CL0023
Cotton_A_11824_CDS 506 717 504 717 PF01061.24 ABC2_membrane Family 3 210 210 146.2 8.9e-43 1 CL0181
Cotton_A_11824_CDS 722 785 722 785 PF08370.11 PDR_assoc Family 1 65 65 82.4 1.4e-23 1 No_clan
Cotton_A_11824_CDS 865 1017 865 1017 PF00005.27 ABC_tran Domain 1 137 137 72.3 5.5e-20 1 CL0023
Cotton_A_11824_CDS 1162 1376 1162 1376 PF01061.24 ABC2_membrane Family 1 210 210 196.4 3.8e-58 1 CL0181
Cotton_A_39156_CDS 522 628 522 628 PF02847.17 MA3 Family 1 113 113 104.5 3e-30 1 CL0020
Cotton_A_35605_CDS 330 361 306 362 PF00536.30 SAM_1 Domain 28 60 64 24.6 2.5e-05 1 CL0003
Cotton_A_05410_CDS 1 73 1 80 PF05153.15 MIOX Family 23 95 249 112.1 3e-32 1 CL0237
Cotton_A_10351_CDS 230 289 228 307 PF17177.4 PPR_long Domain 2 61 212 61.8 5.7e-17 1 CL0020
Cotton_A_10351_CDS 337 483 331 484 PF17177.4 PPR_long Domain 65 211 212 197.0 2.4e-58 1 CL0020
Cotton_A_10351_CDS 526 750 524 750 PF16953.5 PRORP Domain 3 241 241 250.4 1.7e-74 1 CL0280
Cotton_A_01894_CDS 87 230 87 230 PF01565.23 FAD_binding_4 Domain 1 139 139 66.3 2.2e-18 1 CL0077
Cotton_A_01894_CDS 263 350 262 353 PF09265.10 Cytokin-bind Domain 2 93 281 83.8 1.3e-23 1 CL0277
Cotton_A_07686_CDS 237 286 237 286 PF07797.14 DUF1639 Family 1 50 50 90.5 4.9e-26 1 No_clan
Cotton_A_31561_CDS 81 342 73 344 PF00069.25 Pkinase Domain 15 260 264 87.2 1.1e-24 1 CL0016
Cotton_A_40179_CDS 11 439 8 439 PF01080.17 Presenilin Family 5 398 398 432.6 1.2e-129 1 CL0130
Cotton_A_13999_CDS 43 178 38 182 PF10604.9 Polyketide_cyc2 Family 6 137 143 59.3 5e-16 1 CL0209
Cotton_A_18231_CDS 31 106 31 106 PF05922.16 Inhibitor_I9 Domain 1 82 82 56.9 2.6e-15 1 CL0570
Cotton_A_18231_CDS 137 606 136 606 PF00082.22 Peptidase_S8 Domain 2 298 298 173.7 5.3e-51 1 No_clan
Cotton_A_18231_CDS 665 762 665 762 PF17766.1 fn3_6 Domain 1 99 99 87.6 4.9e-25 1 CL0159
Cotton_A_27657_CDS 82 461 81 468 PF01490.18 Aa_trans Family 2 405 409 221.6 1.4e-65 1 CL0062
Cotton_A_20377_CDS 35 76 34 76 PF08263.12 LRRNT_2 Family 2 41 41 35.5 9.3e-09 1 No_clan
Cotton_A_29271_CDS 40 133 39 138 PF02943.15 FeThRed_B Domain 2 99 106 131.0 1.5e-38 1 No_clan
Cotton_A_29271_CDS 332 374 329 384 PF00536.30 SAM_1 Domain 5 47 64 31.4 1.9e-07 1 CL0003
Cotton_A_08872_CDS 97 130 93 130 PF00400.32 WD40 Repeat 6 38 38 26.1 1e-05 1 CL0186
Cotton_A_08872_CDS 368 405 366 405 PF00400.32 WD40 Repeat 5 38 38 15.8 0.019 1 CL0186
Cotton_A_36159_CDS 40 283 37 283 PF00141.23 peroxidase Domain 4 229 229 228.9 6.4e-68 1 CL0617
Cotton_A_04335_CDS 4 64 3 64 PF01200.18 Ribosomal_S28e Family 2 64 64 110.4 3.1e-32 1 CL0021
Cotton_A_01205_CDS 70 250 67 251 PF17047.5 SMP_LBD Domain 4 179 180 45.1 7.6e-12 1 CL0648
Cotton_A_25616_CDS 217 380 216 381 PF01467.26 CTP_transf_like Domain 2 142 143 33.8 3.5e-08 1 CL0039
Cotton_A_26503_CDS 42 315 41 315 PF04674.12 Phi_1 Family 2 276 276 413.8 3.1e-124 1 No_clan
Cotton_A_14818_CDS 11 51 10 53 PF00319.18 SRF-TF Domain 2 42 48 51.9 3.7e-14 1 No_clan
Cotton_A_05838_CDS 1 90 1 91 PF04178.12 Got1 Family 10 112 113 49.8 3.9e-13 1 No_clan
Cotton_A_16669_CDS 28 321 26 322 PF00067.22 p450 Domain 2 294 463 122.3 2.2e-35 1 No_clan
Cotton_A_11688_CDS 142 189 138 190 PF04570.14 zf-FLZ Domain 5 53 54 68.4 2.7e-19 1 CL0175
Cotton_A_17108_CDS 641 707 639 707 PF02135.16 zf-TAZ Family 3 75 75 46.8 3.1e-12 1 No_clan
Cotton_A_17108_CDS 1022 1064 1017 1066 PF00628.29 PHD Domain 8 50 52 29.7 4.3e-07 1 CL0390
Cotton_A_17108_CDS 1121 1350 1117 1430 PF08214.11 HAT_KAT11 Domain 8 241 352 107.3 9.7e-31 1 CL0257
Cotton_A_17108_CDS 1447 1480 1445 1490 PF00569.17 ZZ Domain 4 37 45 27.8 1.6e-06 1 CL0006
Cotton_A_17108_CDS 1515 1585 1514 1595 PF02135.16 zf-TAZ Family 2 75 75 47.7 1.5e-12 1 No_clan
Cotton_A_33718_CDS 94 160 93 162 PF13499.6 EF-hand_7 Domain 2 69 71 30.3 4.4e-07 1 CL0220
Cotton_A_37730_CDS 28 89 28 90 PF00124.19 Photo_RC Family 1 54 260 36.3 3.5e-09 1 No_clan
Cotton_A_37730_CDS 87 213 85 222 PF00124.19 Photo_RC Family 76 204 260 176.9 4.4e-52 1 No_clan
Cotton_A_39598_CDS 33 72 32 73 PF08263.12 LRRNT_2 Family 2 40 41 34.3 2.1e-08 1 No_clan
Cotton_A_39598_CDS 222 283 222 283 PF13855.6 LRR_8 Repeat 1 61 61 35.6 5.8e-09 1 CL0022
Cotton_A_39598_CDS 544 603 543 603 PF13855.6 LRR_8 Repeat 2 61 61 28.0 1.4e-06 1 CL0022
Cotton_A_39598_CDS 713 945 711 1008 PF00069.25 Pkinase Domain 3 214 264 141.2 3.8e-41 1 CL0016
Cotton_A_29464_CDS 16 44 15 45 PF01535.20 PPR Family 2 30 31 10.7 0.52 1 CL0020
Cotton_A_29464_CDS 114 159 113 162 PF13041.6 PPR_2 Repeat 2 47 50 50.7 1.5e-13 1 CL0020
Cotton_A_29464_CDS 186 211 186 212 PF01535.20 PPR Family 4 29 31 17.8 0.0028 1 CL0020
Cotton_A_29464_CDS 212 258 211 260 PF13041.6 PPR_2 Repeat 2 48 50 31.3 1.7e-07 1 CL0020
Cotton_A_29464_CDS 312 360 312 361 PF13041.6 PPR_2 Repeat 1 49 50 32.8 5.7e-08 1 CL0020
Cotton_A_29464_CDS 413 458 413 462 PF13041.6 PPR_2 Repeat 1 46 50 32.7 6.1e-08 1 CL0020
Cotton_A_29464_CDS 489 514 489 516 PF01535.20 PPR Family 4 29 31 24.0 2.9e-05 1 CL0020
Cotton_A_29464_CDS 517 546 517 547 PF01535.20 PPR Family 1 30 31 21.1 0.00024 1 CL0020
Cotton_A_29464_CDS 552 579 552 580 PF01535.20 PPR Family 1 28 31 15.7 0.013 1 CL0020
Cotton_A_01483_CDS 154 286 152 286 PF04535.12 DUF588 Domain 4 150 150 97.2 7.4e-28 1 CL0396
Cotton_A_19473_CDS 108 364 105 366 PF00069.25 Pkinase Domain 5 260 264 83.5 1.5e-23 1 CL0016
Cotton_A_11899_CDS 15 96 7 101 PF12796.7 Ank_2 Repeat 11 78 83 33.1 6.2e-08 1 CL0465
Cotton_A_11899_CDS 109 217 109 217 PF12796.7 Ank_2 Repeat 1 83 83 38.2 1.7e-09 1 CL0465
Cotton_A_29114_CDS 9 97 9 116 PF18052.1 Rx_N Domain 1 89 93 92.8 1.2e-26 1 No_clan
Cotton_A_02687_CDS 7 83 7 84 PF09429.10 Wbp11 Family 1 77 78 81.4 4.5e-23 1 No_clan
Cotton_A_02687_CDS 126 184 126 197 PF12622.7 NpwBP Domain 1 47 49 42.1 1.1e-10 1 No_clan
Cotton_A_31518_CDS 51 193 50 194 PF03018.14 Dirigent Family 2 147 148 183.9 1.4e-54 1 CL0650
Cotton_A_35719_CDS 5 52 2 56 PF13456.6 RVT_3 Domain 71 120 124 25.7 7.8e-06 1 CL0219
Cotton_A_19520_CDS 57 112 56 115 PF13855.6 LRR_8 Repeat 2 59 61 29.8 3.8e-07 1 CL0022
Cotton_A_38956_CDS 231 506 194 513 PF00295.17 Glyco_hydro_28 Domain 54 320 325 145.4 2e-42 1 CL0268
Cotton_A_02662_CDS 10 78 10 78 PF00226.31 DnaJ Domain 1 63 63 74.1 7e-21 1 CL0392
Cotton_A_05135_CDS 131 355 129 357 PF04499.15 SAPS Family 3 238 489 128.1 4.2e-37 1 No_clan
Cotton_A_05135_CDS 357 491 355 491 PF04499.15 SAPS Family 355 489 489 79.1 2.9e-22 1 No_clan
Cotton_A_16173_CDS 81 474 80 474 PF00180.20 Iso_dh Domain 2 348 348 289.0 4.8e-86 1 CL0270
Cotton_A_31722_CDS 2 227 2 234 PF00483.23 NTP_transferase Family 1 241 248 159.8 8.4e-47 1 CL0110
Cotton_A_31722_CDS 258 292 258 293 PF00132.24 Hexapep Repeat 1 35 36 30.4 2e-07 1 CL0536
Cotton_A_21480_CDS 5 316 4 319 PF04321.17 RmlD_sub_bind Domain 2 284 287 142.5 1.4e-41 1 CL0063
Cotton_A_35894_CDS 9 120 9 132 PF06094.12 GGACT Family 1 105 121 57.4 2.1e-15 1 CL0278
Cotton_A_24203_CDS 325 812 325 812 PF03141.16 Methyltransf_29 Family 1 506 506 716.3 1.8e-215 1 CL0063
Cotton_A_33485_CDS 75 166 75 171 PF02148.19 zf-UBP Domain 1 59 64 52.5 4.4e-14 1 CL0229
Cotton_A_33485_CDS 233 1002 233 1002 PF00443.29 UCH Family 1 257 257 172.3 1.3e-50 1 CL0125
Cotton_A_36736_CDS 14 32 14 34 PF00560.33 LRR_1 Repeat 1 19 23 10.1 1.1 1 CL0022
Cotton_A_36736_CDS 111 170 110 170 PF13855.6 LRR_8 Repeat 2 61 61 27.6 1.8e-06 1 CL0022
Cotton_A_36736_CDS 543 810 541 812 PF00069.25 Pkinase Domain 3 260 264 155.6 1.5e-45 1 CL0016
Cotton_A_26637_CDS 83 444 81 447 PF03969.16 AFG1_ATPase Family 4 349 362 319.8 2e-95 1 CL0023
Cotton_A_10878_CDS 13 378 11 378 PF07690.16 MFS_1 Family 3 353 353 125.9 1.7e-36 1 CL0015
Cotton_A_26888_CDS 32 75 31 75 PF13639.6 zf-RING_2 Domain 2 44 44 43.3 3.5e-11 1 CL0229
Cotton_A_23207_CDS 107 156 105 156 PF00847.20 AP2 Domain 3 54 54 47.9 1.2e-12 1 CL0081
Cotton_A_21082_CDS 12 24 4 27 PF14383.6 VARLMGL Domain 13 25 32 21.8 9.6e-05 1 No_clan
Cotton_A_21082_CDS 735 886 735 886 PF14309.6 DUF4378 Family 1 165 165 76.7 2.6e-21 1 No_clan
Cotton_A_18470_CDS 1 86 1 87 PF00912.22 Transgly Family 92 177 178 86.2 1.7e-24 1 CL0037
Cotton_A_34676_CDS 4 39 3 39 PF00400.32 WD40 Repeat 4 38 38 13.3 0.12 1 CL0186
Cotton_A_25299_CDS 10 476 9 476 PF05694.11 SBP56 Family 2 454 454 696.5 1.4e-209 1 CL0186
Cotton_A_01599_CDS 55 87 52 87 PF00132.24 Hexapep Repeat 4 36 36 21.9 9.8e-05 1 CL0536
Cotton_A_01599_CDS 120 151 119 151 PF00132.24 Hexapep Repeat 2 34 36 22.4 7.1e-05 1 CL0536
Cotton_A_29486_CDS 38 229 37 230 PF02492.19 cobW Domain 2 176 177 179.0 6.3e-53 1 CL0023
Cotton_A_29486_CDS 276 370 275 371 PF07683.14 CobW_C Domain 2 93 94 61.1 7.4e-17 1 No_clan
Cotton_A_35066_CDS 63 100 63 100 PF01753.18 zf-MYND Domain 1 38 38 41.4 1.1e-10 1 CL0175
Cotton_A_35066_CDS 155 460 155 460 PF00443.29 UCH Family 1 257 257 156.3 1e-45 1 CL0125
Cotton_A_00070_CDS 324 496 324 496 PF12214.8 TPX2_importin Family 1 166 166 192.7 5e-57 1 No_clan
Cotton_A_16640_CDS 50 144 49 145 PF15277.6 Sec3-PIP2_bind Domain 2 89 90 59.9 1.9e-16 1 CL0266
Cotton_A_16640_CDS 252 510 250 539 PF09763.9 Sec3_C Family 3 259 700 153.0 1.1e-44 1 CL0295
Cotton_A_16640_CDS 549 891 530 892 PF09763.9 Sec3_C Family 329 699 700 142.0 2.4e-41 1 CL0295
Cotton_A_15178_CDS 2 89 1 95 PF02724.14 CDC45 Family 335 422 636 113.2 1.1e-32 1 No_clan
Cotton_A_12803_CDS 5 156 2 182 PF05097.12 DUF688 Family 54 126 446 25.6 6.6e-06 1 No_clan
Cotton_A_35003_CDS 38 84 7 86 PF03732.17 Retrotrans_gag Family 16 67 96 25.2 1.4e-05 1 CL0523
Cotton_A_30659_CDS 129 543 129 557 PF00854.21 PTR2 Family 1 389 395 370.1 1.2e-110 1 CL0015
Cotton_A_22890_CDS 53 196 53 201 PF01490.18 Aa_trans Family 1 144 409 114.0 6.9e-33 1 CL0062
Cotton_A_14478_CDS 197 294 194 301 PF03168.13 LEA_2 Domain 4 95 101 25.6 1.3e-05 1 CL0159
Cotton_A_25120_CDS 5 376 3 376 PF00022.19 Actin Family 3 407 407 493.1 5e-148 1 CL0108
Cotton_A_01188_CDS 44 383 42 383 PF05910.12 DUF868 Family 3 279 279 290.1 2e-86 1 No_clan
Cotton_A_09150_CDS 56 233 56 236 PF13520.6 AA_permease_2 Family 1 166 425 75.9 2.8e-21 1 CL0062
Cotton_A_11007_CDS 12 321 11 356 PF00266.19 Aminotran_5 Domain 3 323 371 104.7 4.9e-30 1 CL0061
Cotton_A_07567_CDS 259 692 258 694 PF01432.20 Peptidase_M3 Family 2 445 458 372.2 4.9e-111 1 CL0126
Cotton_A_03847_CDS 342 441 342 443 PF02362.21 B3 Family 1 99 101 57.7 8.1e-16 1 CL0405
Cotton_A_03847_CDS 574 616 574 617 PF07496.15 zf-CW Domain 1 47 48 47.3 1.5e-12 1 No_clan
Cotton_A_10955_CDS 1 70 1 84 PF14226.6 DIOX_N Family 33 104 118 37.9 2.5e-09 1 CL0029
Cotton_A_10955_CDS 129 186 128 190 PF03171.20 2OG-FeII_Oxy Domain 2 59 101 45.8 6.6e-12 1 CL0029
Cotton_A_35374_CDS 15 92 15 93 PF00076.22 RRM_1 Domain 1 69 70 32.5 5.8e-08 1 CL0221
Cotton_A_35374_CDS 147 176 146 177 PF00641.18 zf-RanBP Domain 2 29 30 28.0 9.4e-07 1 CL0167
Cotton_A_35374_CDS 216 242 214 242 PF00641.18 zf-RanBP Domain 4 30 30 21.0 0.00015 1 CL0167
Cotton_A_10283_CDS 21 173 14 175 PF03062.19 MBOAT Family 103 255 348 61.3 1e-16 1 CL0517
Cotton_A_10534_CDS 8 47 7 52 PF03939.13 Ribosomal_L23eN Family 2 45 51 38.7 8.3e-10 1 No_clan
Cotton_A_10534_CDS 62 115 61 120 PF00276.20 Ribosomal_L23 Family 2 55 86 38.8 9.1e-10 1 No_clan
Cotton_A_15201_CDS 76 145 75 147 PF04564.15 U-box Domain 2 71 73 79.2 2e-22 1 CL0229
Cotton_A_15201_CDS 290 326 288 327 PF00514.23 Arm Repeat 4 40 41 23.3 4.8e-05 1 CL0020
Cotton_A_16837_CDS 4 85 2 86 PF00276.20 Ribosomal_L23 Family 3 84 86 68.0 6.8e-19 1 No_clan
Cotton_A_19496_CDS 45 240 31 240 PF06045.11 Rhamnogal_lyase Family 15 213 213 298.4 2.4e-89 1 CL0103
Cotton_A_19496_CDS 394 465 393 467 PF14686.6 fn3_3 Domain 2 73 75 88.6 1.7e-25 1 CL0287
Cotton_A_19496_CDS 480 668 480 668 PF14683.6 CBM-like Domain 1 165 165 183.1 3.5e-54 1 CL0202
Cotton_A_23417_CDS 1034 1074 1032 1077 PF00249.31 Myb_DNA-binding Domain 3 43 46 35.9 6.2e-09 1 CL0123
Cotton_A_02010_CDS 1 130 1 130 PF00069.25 Pkinase Domain 154 264 264 77.9 7.9e-22 1 CL0016
Cotton_A_02765_CDS 39 95 38 96 PF02701.15 zf-Dof Family 2 58 59 113.5 3.6e-33 1 No_clan
Cotton_A_34411_CDS 5 89 2 99 PF00651.31 BTB Domain 11 101 111 41.4 1.4e-10 1 CL0033
Cotton_A_34411_CDS 160 217 139 219 PF03000.14 NPH3 Family 198 255 258 38.9 7.4e-10 1 No_clan
Cotton_A_08863_CDS 52 285 52 285 PF03087.14 DUF241 Family 1 234 234 200.7 3.1e-59 1 CL0133
Cotton_A_00411_CDS 17 178 17 179 PF00071.22 Ras Domain 1 161 162 222.8 1.7e-66 1 CL0023
Cotton_A_00054_CDS 97 145 83 145 PF02921.14 UCR_TM Family 9 66 66 41.9 1.1e-10 1 CL0300
Cotton_A_00054_CDS 159 260 152 263 PF00355.26 Rieske Domain 11 87 89 44.6 1e-11 1 CL0516
Cotton_A_06751_CDS 12 475 11 491 PF03094.15 Mlo Family 2 463 479 561.1 1.5e-168 1 No_clan
Cotton_A_00448_CDS 44 108 43 108 PF04689.13 S1FA Family 2 66 66 137.4 1.3e-40 1 No_clan
Cotton_A_23751_CDS 153 330 153 330 PF11891.8 RETICULATA-like Family 1 177 177 226.7 1.7e-67 1 No_clan
Cotton_A_23511_CDS 127 222 127 222 PF08241.12 Methyltransf_11 Domain 1 96 96 65.4 5.4e-18 1 CL0063
Cotton_A_34711_CDS 279 495 278 510 PF01697.27 Glyco_transf_92 Domain 2 239 260 139.5 1.5e-40 1 CL0110
Cotton_A_03990_CDS 3 101 2 111 PF00168.30 C2 Domain 2 95 103 63.9 1.4e-17 1 CL0154
Cotton_A_03990_CDS 315 409 314 419 PF00168.30 C2 Domain 2 93 103 77.7 6.8e-22 1 CL0154
Cotton_A_03990_CDS 476 580 475 581 PF00168.30 C2 Domain 2 102 103 69.2 3.1e-19 1 CL0154
Cotton_A_03990_CDS 638 746 638 746 PF00168.30 C2 Domain 1 103 103 80.0 1.3e-22 1 CL0154
Cotton_A_03990_CDS 891 1045 891 1046 PF08372.10 PRT_C Family 1 155 156 264.8 2e-79 1 CL0484
Cotton_A_15143_CDS 29 118 26 141 PF07714.17 Pkinase_Tyr Domain 4 99 259 56.1 3.3e-15 1 CL0016
Cotton_A_15143_CDS 125 238 120 241 PF00069.25 Pkinase Domain 149 258 264 43.7 2.1e-11 1 CL0016
Cotton_A_32746_CDS 4 76 3 77 PF00240.23 ubiquitin Domain 2 71 72 67.8 5.2e-19 1 CL0072
Cotton_A_32746_CDS 156 191 152 191 PF00627.31 UBA Domain 5 37 37 50.0 2e-13 1 CL0214
Cotton_A_32746_CDS 259 314 259 315 PF09280.11 XPC-binding Domain 1 56 57 82.9 9.5e-24 1 No_clan
Cotton_A_32746_CDS 340 375 339 375 PF00627.31 UBA Domain 2 37 37 47.2 1.5e-12 1 CL0214
Cotton_A_37105_CDS 46 388 46 389 PF12819.7 Malectin_like Domain 1 335 336 148.3 3e-43 1 CL0202
Cotton_A_37105_CDS 498 760 494 763 PF07714.17 Pkinase_Tyr Domain 5 256 259 155.8 1.2e-45 1 CL0016
Cotton_A_29989_CDS 10 78 9 79 PF00076.22 RRM_1 Domain 2 69 70 72.7 1.6e-20 1 CL0221
Cotton_A_07935_CDS 103 151 102 151 PF14570.6 zf-RING_4 Domain 2 48 48 51.5 6.4e-14 1 CL0229
Cotton_A_07935_CDS 336 1096 336 1102 PF03552.14 Cellulose_synt Family 1 715 722 1238.9 0 1 CL0110
Cotton_A_00079_CDS 24 70 24 70 PF13445.6 zf-RING_UBOX Domain 1 39 39 30.2 3.4e-07 1 CL0229
Cotton_A_04842_CDS 44 270 42 314 PF01636.23 APH Family 3 210 240 143.4 1e-41 1 CL0016
Cotton_A_04842_CDS 410 550 407 551 PF02771.16 Acyl-CoA_dh_N Domain 4 112 113 38.9 1.1e-09 1 CL0544
Cotton_A_04842_CDS 555 656 555 656 PF02770.19 Acyl-CoA_dh_M Domain 1 97 97 68.2 5.4e-19 1 No_clan
Cotton_A_04842_CDS 668 816 668 819 PF00441.24 Acyl-CoA_dh_1 Domain 1 147 150 119.8 1.1e-34 1 CL0087
Cotton_A_10875_CDS 16 78 15 80 PF00191.20 Annexin Family 2 64 66 70.6 8.2e-20 1 No_clan
Cotton_A_10875_CDS 87 152 87 152 PF00191.20 Annexin Family 1 66 66 58.2 6.3e-16 1 No_clan
Cotton_A_10875_CDS 171 234 170 235 PF00191.20 Annexin Family 2 65 66 44.8 9.6e-12 1 No_clan
Cotton_A_10875_CDS 245 310 245 310 PF00191.20 Annexin Family 1 66 66 67.7 6.8e-19 1 No_clan
Cotton_A_15617_CDS 74 215 73 215 PF04043.15 PMEI Domain 2 154 154 91.5 6.5e-26 1 No_clan
Cotton_A_15617_CDS 264 557 264 558 PF01095.19 Pectinesterase Family 1 297 298 476.0 3e-143 1 CL0268
Cotton_A_12948_CDS 251 323 250 325 PF04564.15 U-box Domain 4 71 73 58.7 4.8e-16 1 CL0229
Cotton_A_12948_CDS 897 929 893 930 PF00514.23 Arm Repeat 7 39 41 21.9 0.00012 1 CL0020
Cotton_A_10699_CDS 274 326 274 326 PF05739.19 SNARE Family 1 53 53 57.5 9.5e-16 1 No_clan
Cotton_A_08108_CDS 123 252 123 253 PF00004.29 AAA Domain 1 131 132 124.8 2.9e-36 1 CL0023
Cotton_A_08108_CDS 275 310 275 318 PF17862.1 AAA_lid_3 Domain 1 36 45 35.1 8.6e-09 1 CL0671
Cotton_A_30647_CDS 27 437 27 453 PF00067.22 p450 Domain 1 441 463 256.9 3.3e-76 1 No_clan
Cotton_A_16286_CDS 220 345 219 346 PF00134.23 Cyclin_N Domain 2 126 127 154.0 1.5e-45 1 CL0065
Cotton_A_16286_CDS 348 462 348 466 PF02984.19 Cyclin_C Domain 1 115 119 101.3 3.5e-29 1 CL0065
Cotton_A_09324_CDS 10 360 9 360 PF00724.20 Oxidored_FMN Domain 2 342 342 288.1 9.9e-86 1 CL0036
Cotton_A_21542_CDS 13 145 13 145 PF00380.19 Ribosomal_S9 Family 1 121 121 110.1 9.2e-32 1 CL0329
Cotton_A_02725_CDS 15 96 11 96 PF17815.1 PDZ_3 Domain 64 145 145 86.0 2.1e-24 1 CL0466
Cotton_A_29910_CDS 206 428 206 430 PF08323.11 Glyco_transf_5 Domain 1 242 244 101.9 4.3e-29 1 CL0113
Cotton_A_30756_CDS 8 144 2 149 PF00407.19 Bet_v_1 Domain 7 144 151 137.2 4e-40 1 CL0209
Cotton_A_14001_CDS 8 194 8 198 PF01370.21 Epimerase Family 1 171 241 68.1 7.5e-19 1 CL0063
Cotton_A_13351_CDS 445 618 444 622 PF00270.29 DEAD Domain 2 171 176 95.1 4e-27 1 CL0023
Cotton_A_13351_CDS 926 1004 926 1009 PF02889.16 Sec63 Family 1 78 257 82.0 3.6e-23 1 No_clan
Cotton_A_34588_CDS 907 1520 904 1548 PF07539.12 DRIM Family 4 597 623 315.4 6.5e-94 1 No_clan
Cotton_A_12126_CDS 25 419 25 419 PF12056.8 DUF3537 Family 1 390 390 563.9 1.6e-169 1 No_clan
Cotton_A_11114_CDS 58 133 31 166 PF06325.13 PrmA Family 161 235 296 43.0 3.6e-11 1 CL0063
Cotton_A_09475_CDS 10 321 9 339 PF01979.20 Amidohydro_1 Domain 8 317 344 96.8 1.5e-27 1 CL0034
Cotton_A_34791_CDS 252 296 247 297 PF13415.6 Kelch_3 Domain 7 48 49 22.4 0.00011 1 CL0186
Cotton_A_34791_CDS 721 928 720 929 PF00149.28 Metallophos Domain 2 203 204 116.3 2.5e-33 1 CL0163
Cotton_A_05732_CDS 25 107 25 107 PF00447.17 HSF_DNA-bind Domain 1 96 96 66.5 2.5e-18 1 CL0123
Cotton_A_16132_CDS 53 111 53 111 PF11717.8 Tudor-knot Family 1 55 55 74.0 6.5e-21 1 CL0049
Cotton_A_16132_CDS 165 219 165 219 PF17772.1 zf-MYST Domain 1 55 55 86.0 9.4e-25 1 CL0361
Cotton_A_16132_CDS 224 401 224 401 PF01853.18 MOZ_SAS Family 1 179 179 282.5 1.1e-84 1 CL0257
Cotton_A_02417_CDS 80 183 79 184 PF01225.25 Mur_ligase Domain 2 87 88 71.4 5.9e-20 1 CL0063
Cotton_A_02417_CDS 188 317 188 328 PF08245.12 Mur_ligase_M Domain 1 129 192 52.5 5.8e-14 1 No_clan
Cotton_A_02417_CDS 328 397 320 398 PF08245.12 Mur_ligase_M Domain 122 191 192 25.7 9.8e-06 1 No_clan
Cotton_A_25956_CDS 129 577 117 578 PF00501.28 AMP-binding Family 17 422 423 358.3 4.4e-107 1 CL0378
Cotton_A_19794_CDS 35 81 33 81 PF08263.12 LRRNT_2 Family 3 41 41 27.6 2.6e-06 1 No_clan
Cotton_A_19794_CDS 115 136 114 136 PF00560.33 LRR_1 Repeat 2 23 23 10.7 0.67 1 CL0022
Cotton_A_19794_CDS 230 288 229 288 PF13855.6 LRR_8 Repeat 2 61 61 27.9 1.4e-06 1 CL0022
Cotton_A_28383_CDS 10 89 10 104 PF00179.26 UQ_con Domain 1 77 140 40.1 2.6e-10 1 CL0208
Cotton_A_04390_CDS 2 67 1 67 PF04502.13 DUF572 Family 69 134 332 79.4 3.7e-22 1 No_clan
Cotton_A_02404_CDS 301 356 301 356 PF03478.18 DUF295 Domain 1 55 55 60.8 6.9e-17 1 No_clan
Cotton_A_21300_CDS 61 145 53 151 PF07690.16 MFS_1 Family 2 86 353 34.8 8.6e-09 1 CL0015
Cotton_A_21300_CDS 162 410 147 422 PF00083.24 Sugar_tr Family 161 411 452 162.5 1.5e-47 1 CL0015
Cotton_A_26927_CDS 304 346 274 360 PF00782.20 DSPc Domain 73 114 133 24.4 2e-05 1 CL0031
Cotton_A_10162_CDS 17 102 17 107 PF00106.25 adh_short Domain 1 87 195 78.9 3.2e-22 1 CL0063
Cotton_A_25158_CDS 4 123 4 123 PF04145.15 Ctr Family 1 148 148 79.7 3.3e-22 1 No_clan
Cotton_A_02812_CDS 39 119 39 119 PF02298.17 Cu_bind_like Domain 1 84 84 78.8 2.4e-22 1 CL0026
Cotton_A_19703_CDS 14 97 4 104 PF02362.21 B3 Family 13 94 101 47.2 1.6e-12 1 CL0405
Cotton_A_22856_CDS 311 353 311 354 PF06203.14 CCT Motif 1 43 44 68.2 4.6e-19 1 CL0281
Cotton_A_17751_CDS 5 141 5 142 PF00179.26 UQ_con Domain 1 139 140 181.2 7.4e-54 1 CL0208
Cotton_A_16327_CDS 21 157 17 161 PF00892.20 EamA Family 5 133 137 45.4 8.6e-12 1 CL0184
Cotton_A_16327_CDS 191 329 190 330 PF00892.20 EamA Family 2 136 137 38.1 1.5e-09 1 CL0184
Cotton_A_34408_CDS 48 113 48 115 PF03144.25 GTP_EFTU_D2 Domain 1 72 74 56.5 2.8e-15 1 CL0575
Cotton_A_34408_CDS 122 229 121 230 PF03143.17 GTP_EFTU_D3 Domain 2 111 112 134.3 2.1e-39 1 No_clan
Cotton_A_37240_CDS 1084 1188 1083 1189 PF00856.28 SET Family 2 168 169 76.6 2.9e-21 1 No_clan
Cotton_A_27916_CDS 44 85 43 88 PF00249.31 Myb_DNA-binding Domain 2 43 46 33.1 4.8e-08 1 CL0123
Cotton_A_27916_CDS 653 753 653 753 PF06584.13 DIRP Family 1 106 106 105.5 1.5e-30 1 No_clan
Cotton_A_40483_CDS 108 286 106 287 PF00574.23 CLP_protease Domain 3 181 182 267.7 5.1e-80 1 CL0127
Cotton_A_11925_CDS 2 161 1 161 PF03151.16 TPT Family 126 290 290 44.2 1.5e-11 1 CL0184
Cotton_A_27930_CDS 272 470 270 472 PF01501.20 Glyco_transf_8 Family 3 252 256 42.7 4.8e-11 1 CL0110
Cotton_A_14526_CDS 446 693 435 696 PF09787.9 Golgin_A5 Family 38 297 306 78.7 5.1e-22 1 No_clan
Cotton_A_13010_CDS 6 88 4 89 PF13837.6 Myb_DNA-bind_4 Domain 3 89 90 75.4 3.5e-21 1 CL0123
Cotton_A_12115_CDS 180 266 179 267 PF13813.6 MBOAT_2 Family 2 82 83 64.6 7.7e-18 1 CL0517
Cotton_A_09052_CDS 33 412 32 413 PF01266.24 DAO Domain 2 351 352 111.9 4.8e-32 1 CL0063
Cotton_A_31343_CDS 2 319 1 339 PF00067.22 p450 Domain 115 439 463 206.8 5.2e-61 1 No_clan
Cotton_A_37523_CDS 12 98 1 104 PF04571.14 Lipin_N Family 8 95 102 99.1 1.1e-28 1 No_clan
Cotton_A_37523_CDS 568 641 568 676 PF16876.5 Lipin_mid Family 1 72 101 42.7 4.7e-11 1 No_clan
Cotton_A_37523_CDS 729 952 728 952 PF08235.13 LNS2 Domain 2 226 226 316.1 1.1e-94 1 CL0137
Cotton_A_12866_CDS 13 73 10 74 PF13499.6 EF-hand_7 Domain 4 70 71 53.2 3e-14 1 CL0220
Cotton_A_12866_CDS 84 146 83 147 PF13499.6 EF-hand_7 Domain 2 70 71 63.4 1.9e-17 1 CL0220
Cotton_A_11364_CDS 1 66 1 67 PF11820.8 DUF3339 Family 1 66 67 116.2 5.5e-34 1 No_clan
Cotton_A_06257_CDS 14 105 13 114 PF03226.14 Yippee-Mis18 Domain 3 90 105 54.3 1.3e-14 1 CL0080
Cotton_A_33823_CDS 39 137 38 144 PF03018.14 Dirigent Family 2 102 148 89.2 2.2e-25 1 CL0650
Cotton_A_35462_CDS 283 399 250 443 PF00201.18 UDPGT Family 275 377 499 67.0 1.4e-18 1 CL0113
Cotton_A_40896_CDS 61 167 60 168 PF13085.6 Fer2_3 Domain 2 108 109 102.4 1.2e-29 1 CL0486
Cotton_A_40896_CDS 204 278 204 278 PF13534.6 Fer4_17 Domain 1 61 61 35.2 1.3e-08 1 CL0344
Cotton_A_32378_CDS 72 462 72 462 PF00464.19 SHMT Domain 1 399 399 634.3 6e-191 1 CL0061
Cotton_A_32378_CDS 544 643 541 643 PF08576.10 DUF1764 Family 3 100 100 95.1 3.8e-27 1 No_clan
Cotton_A_20731_CDS 183 244 179 245 PF12174.8 RST Domain 5 66 67 70.3 9.4e-20 1 No_clan
Cotton_A_20731_CDS 646 945 646 945 PF05236.14 TAF4 Family 1 277 277 266.2 4.2e-79 1 CL0012
Cotton_A_05569_CDS 215 530 215 531 PF10250.9 O-FucT Family 1 335 336 242.5 9.2e-72 1 CL0113
Cotton_A_17539_CDS 13 98 11 108 PF01453.24 B_lectin Domain 3 93 105 70.6 1.4e-19 1 No_clan
Cotton_A_17539_CDS 153 264 149 268 PF00954.20 S_locus_glycop Domain 6 106 111 28.1 2.3e-06 1 No_clan
Cotton_A_11921_CDS 51 248 48 248 PF05634.11 APO_RNA-bind Family 4 200 200 325.6 8.3e-98 1 No_clan
Cotton_A_11921_CDS 284 398 279 411 PF05634.11 APO_RNA-bind Family 67 181 200 100.9 5.9e-29 1 No_clan
Cotton_A_25487_CDS 304 556 303 556 PF00069.25 Pkinase Domain 2 264 264 233.5 2.6e-69 1 CL0016
Cotton_A_39620_CDS 2 81 1 95 PF00350.23 Dynamin_N Domain 2 78 168 56.5 3.4e-15 1 CL0023
Cotton_A_39671_CDS 14 138 14 138 PF14432.6 DYW_deaminase Family 1 127 127 138.3 1.2e-40 1 CL0109
Cotton_A_03046_CDS 123 271 105 280 PF02902.19 Peptidase_C48 Domain 53 203 216 56.5 3.3e-15 1 CL0125
Cotton_A_33772_CDS 223 281 221 281 PF04117.12 Mpv17_PMP22 Family 3 62 62 72.2 3.1e-20 1 No_clan
Cotton_A_12349_CDS 286 453 283 456 PF00953.21 Glycos_transf_4 Family 4 157 160 95.9 2.4e-27 1 No_clan
Cotton_A_24947_CDS 17 56 16 68 PF00458.20 WHEP-TRS Domain 3 42 53 37.9 1.4e-09 1 CL0600
Cotton_A_24947_CDS 254 565 252 567 PF00587.25 tRNA-synt_2b Domain 12 177 179 37.9 1.7e-09 1 CL0040
Cotton_A_24947_CDS 593 679 593 680 PF03129.20 HGTP_anticodon Domain 1 92 94 60.7 1.1e-16 1 CL0458
Cotton_A_10559_CDS 3 42 3 42 PF01779.17 Ribosomal_L29e Family 1 40 40 83.1 1.2e-23 1 No_clan
Cotton_A_09303_CDS 36 233 19 233 PF02309.16 AUX_IAA Family 44 237 237 285.4 4.1e-85 1 CL0072
Cotton_A_39544_CDS 83 140 82 140 PF03106.15 WRKY Domain 2 59 59 88.3 2.8e-25 1 CL0274
Cotton_A_31073_CDS 2 72 1 80 PF13456.6 RVT_3 Domain 12 85 124 38.7 7.4e-10 1 CL0219
Cotton_A_08835_CDS 49 215 49 215 PF07800.12 DUF1644 Family 1 168 168 228.8 3.9e-68 1 CL0229
Cotton_A_09586_CDS 16 154 13 154 PF04116.13 FA_hydroxylase Family 4 133 133 73.0 2.9e-20 1 No_clan
Cotton_A_09586_CDS 333 495 333 495 PF12076.8 Wax2_C Domain 1 164 164 218.1 5.5e-65 1 No_clan
Cotton_A_01171_CDS 199 335 197 337 PF10409.9 PTEN_C2 Family 3 133 135 95.5 2.1e-27 1 CL0154
Cotton_A_23781_CDS 9 96 9 120 PF18052.1 Rx_N Domain 1 89 93 75.6 2.8e-21 1 No_clan
Cotton_A_23781_CDS 171 286 170 297 PF00931.22 NB-ARC Domain 2 118 252 85.0 4.5e-24 1 CL0023
Cotton_A_26900_CDS 67 94 67 118 PF13450.6 NAD_binding_8 Domain 1 28 68 22.8 8.1e-05 1 CL0063
Cotton_A_26900_CDS 214 483 213 483 PF08491.10 SE Family 2 276 276 318.6 2.6e-95 1 CL0063
Cotton_A_10795_CDS 105 282 105 283 PF02194.15 PXA Family 1 181 182 133.9 6.1e-39 1 No_clan
Cotton_A_10795_CDS 597 690 584 690 PF00787.24 PX Domain 17 113 113 59.9 2.1e-16 1 No_clan
Cotton_A_13592_CDS 121 363 121 364 PF02358.16 Trehalose_PPase Family 1 232 233 247.1 1.2e-73 1 CL0137
Cotton_A_33740_CDS 9 170 8 171 PF00160.21 Pro_isomerase Domain 2 157 158 168.4 1.4e-49 1 CL0475
Cotton_A_31466_CDS 96 310 96 310 PF09353.10 DUF1995 Domain 1 196 197 144.9 3.1e-42 1 No_clan
Cotton_A_36335_CDS 189 373 153 382 PF04616.14 Glyco_hydro_43 Family 33 223 288 68.6 5.4e-19 1 CL0143
Cotton_A_21204_CDS 55 148 54 148 PF13837.6 Myb_DNA-bind_4 Domain 2 90 90 79.5 1.8e-22 1 CL0123
Cotton_A_19384_CDS 4 293 3 296 PF01213.19 CAP_N Family 2 313 317 274.1 1.8e-81 1 No_clan
Cotton_A_19384_CDS 312 468 311 468 PF08603.11 CAP_C Family 2 157 157 200.8 9.3e-60 1 CL0391
Cotton_A_26611_CDS 148 771 147 772 PF00133.22 tRNA-synt_1 Family 2 601 602 668.9 5.5e-201 1 CL0039
Cotton_A_26611_CDS 817 967 816 973 PF08264.13 Anticodon_1 Domain 2 147 152 127.2 5.1e-37 1 CL0258
Cotton_A_03220_CDS 601 691 600 691 PF04576.15 Zein-binding Family 2 92 92 106.8 5.2e-31 1 No_clan
Cotton_A_10808_CDS 47 539 46 539 PF02990.16 EMP70 Family 2 519 519 564.1 2.8e-169 1 No_clan
Cotton_A_05425_CDS 1099 1169 1098 1177 PF07303.13 Occludin_ELL Domain 2 71 101 40.7 2.9e-10 1 No_clan
Cotton_A_15425_CDS 1 101 1 101 PF01157.18 Ribosomal_L21e Family 1 101 101 158.8 2.6e-47 1 CL0107
Cotton_A_29807_CDS 9 32 8 33 PF13912.6 zf-C2H2_6 Domain 2 25 27 27.5 2.2e-06 1 CL0361
Cotton_A_29807_CDS 100 123 100 124 PF13912.6 zf-C2H2_6 Domain 3 26 27 32.3 6.8e-08 1 CL0361
Cotton_A_29807_CDS 268 292 267 293 PF13912.6 zf-C2H2_6 Domain 2 26 27 39.8 3.2e-10 1 CL0361
Cotton_A_29807_CDS 339 361 339 362 PF13912.6 zf-C2H2_6 Domain 2 24 27 45.9 3.7e-12 1 CL0361
Cotton_A_17636_CDS 36 131 35 132 PF01657.17 Stress-antifung Family 2 94 95 68.5 6e-19 1 No_clan
Cotton_A_17636_CDS 145 244 144 245 PF01657.17 Stress-antifung Family 2 94 95 47.1 2.9e-12 1 No_clan
Cotton_A_17636_CDS 346 605 342 608 PF07714.17 Pkinase_Tyr Domain 6 256 259 145.0 2.5e-42 1 CL0016
Cotton_A_20100_CDS 327 424 233 439 PF00201.18 UDPGT Family 325 417 499 44.4 9.7e-12 1 CL0113
Cotton_A_26393_CDS 25 204 14 223 PF00378.20 ECH_1 Domain 20 194 251 85.0 4.9e-24 1 CL0127
Cotton_A_21163_CDS 9 52 1 52 PF05419.12 GUN4 Domain 100 140 140 32.2 9.9e-08 1 No_clan
Cotton_A_13138_CDS 94 216 94 216 PF13793.6 Pribosyltran_N Domain 1 116 116 159.9 2e-47 1 CL0533
Cotton_A_13138_CDS 301 409 290 410 PF14572.6 Pribosyl_synth Domain 74 183 184 81.0 1.1e-22 1 CL0533
Cotton_A_08894_CDS 7 52 6 57 PF00226.31 DnaJ Domain 2 47 63 48.2 8.9e-13 1 CL0392
Cotton_A_08894_CDS 186 379 186 383 PF14308.6 DnaJ-X Domain 1 206 211 165.8 8.7e-49 1 No_clan
Cotton_A_20058_CDS 3 316 2 318 PF08267.12 Meth_synt_1 Domain 2 311 313 395.7 1.7e-118 1 CL0160
Cotton_A_20058_CDS 432 755 432 756 PF01717.18 Meth_synt_2 Domain 1 323 324 524.2 1.3e-157 1 CL0160
Cotton_A_06417_CDS 37 287 36 294 PF00139.19 Lectin_legB Domain 2 240 249 213.3 4e-63 1 CL0004
Cotton_A_06417_CDS 379 647 377 649 PF00069.25 Pkinase Domain 3 259 264 147.0 6.5e-43 1 CL0016
Cotton_A_23656_CDS 14 75 13 75 PF00462.24 Glutaredoxin Domain 2 60 60 48.3 8.5e-13 1 CL0172
Cotton_A_02723_CDS 1 176 1 177 PF00089.26 Trypsin Domain 12 220 221 59.4 4.4e-16 1 CL0124
Cotton_A_02723_CDS 253 381 251 381 PF17815.1 PDZ_3 Domain 18 145 145 125.2 1.8e-36 1 CL0466
Cotton_A_14349_CDS 14 168 14 168 PF16639.5 Apocytochr_F_N Domain 1 155 155 258.9 1.8e-77 1 No_clan
Cotton_A_04939_CDS 16 139 16 139 PF02365.15 NAM Family 1 126 126 78.9 5.9e-22 1 No_clan
Cotton_A_20101_CDS 231 371 206 384 PF00201.18 UDPGT Family 283 417 499 45.3 5.4e-12 1 CL0113
Cotton_A_20434_CDS 53 313 50 315 PF00069.25 Pkinase Domain 4 260 264 130.1 9.2e-38 1 CL0016
Cotton_A_06420_CDS 47 306 46 306 PF10343.9 Q_salvage Family 2 282 282 289.9 2.3e-86 1 No_clan
Cotton_A_35313_CDS 26 186 26 187 PF00071.22 Ras Domain 1 161 162 199.7 2.2e-59 1 CL0023
Cotton_A_15096_CDS 35 316 35 318 PF00067.22 p450 Domain 1 301 463 60.5 1.2e-16 1 No_clan
Cotton_A_28451_CDS 1 341 1 341 PF03105.19 SPX Domain 1 384 384 260.0 6.8e-77 1 No_clan
Cotton_A_28451_CDS 446 781 446 781 PF03124.14 EXS Family 1 331 331 284.2 1.4e-84 1 CL0182
Cotton_A_25092_CDS 177 295 177 296 PF00651.31 BTB Domain 1 110 111 100.5 6.2e-29 1 CL0033
Cotton_A_25941_CDS 191 419 190 419 PF03803.15 Scramblase Domain 2 221 221 222.6 3.6e-66 1 CL0395
Cotton_A_27211_CDS 383 564 342 645 PF00176.23 SNF2_N Family 52 239 350 71.8 4.2e-20 1 CL0023
Cotton_A_27211_CDS 714 826 709 827 PF00271.31 Helicase_C Family 6 110 111 41.4 1.5e-10 1 CL0023
Cotton_A_11311_CDS 148 249 148 250 PF02362.21 B3 Family 1 100 101 79.3 1.6e-22 1 CL0405
Cotton_A_11311_CDS 274 355 274 356 PF06507.13 Auxin_resp Family 1 82 83 115.6 9e-34 1 No_clan
Cotton_A_27088_CDS 23 60 19 60 PF00010.26 HLH Domain 18 53 53 24.4 2e-05 1 No_clan
Cotton_A_35651_CDS 117 289 113 291 PF07991.12 IlvN Family 5 161 165 112.0 2.1e-32 1 CL0063
Cotton_A_35651_CDS 298 441 297 443 PF01450.19 IlvC Family 2 142 144 116.6 1.1e-33 1 CL0106
Cotton_A_35651_CDS 455 530 452 536 PF01450.19 IlvC Family 18 92 144 33.6 4.2e-08 1 CL0106
Cotton_A_23427_CDS 78 103 77 104 PF16045.5 LisH_2 Domain 2 27 28 46.5 1.3e-12 1 CL0561
Cotton_A_15149_CDS 6 20 2 24 PF14383.6 VARLMGL Domain 12 26 32 23.0 4.3e-05 1 No_clan
Cotton_A_15149_CDS 646 797 646 797 PF14309.6 DUF4378 Family 1 165 165 95.8 3.6e-27 1 No_clan
Cotton_A_38882_CDS 8 120 2 122 PF00069.25 Pkinase Domain 154 260 264 34.9 1e-08 1 CL0016
Cotton_A_34903_CDS 4 358 4 358 PF05631.14 MFS_5 Family 1 354 354 612.9 1.5e-184 1 CL0015
Cotton_A_18580_CDS 156 406 155 406 PF00454.27 PI3_PI4_kinase Family 2 250 250 157.0 7.6e-46 1 CL0016
Cotton_A_06706_CDS 90 283 68 294 PF01663.22 Phosphodiest Family 85 235 357 37.4 2.2e-09 1 CL0088
Cotton_A_14163_CDS 205 270 204 272 PF01363.21 FYVE Domain 2 66 68 61.7 5.2e-17 1 CL0390
Cotton_A_14163_CDS 387 512 386 513 PF04366.12 Ysc84 Family 2 127 128 125.1 1.3e-36 1 No_clan
Cotton_A_17341_CDS 140 199 137 200 PF00170.21 bZIP_1 Family 4 63 64 48.8 5.6e-13 1 CL0018
Cotton_A_35559_CDS 55 313 54 314 PF00685.27 Sulfotransfer_1 Domain 2 266 267 207.2 3e-61 1 CL0023
Cotton_A_29508_CDS 10 65 10 66 PF00412.22 LIM Domain 1 57 58 44.7 1.2e-11 1 CL0167
Cotton_A_17938_CDS 39 194 38 194 PF00582.26 Usp Domain 2 141 141 105.5 3.2e-30 1 CL0039
Cotton_A_37793_CDS 16 163 15 164 PF02878.16 PGM_PMM_I Domain 2 137 138 110.2 6e-32 1 No_clan
Cotton_A_37793_CDS 199 308 198 311 PF02879.16 PGM_PMM_II Domain 2 99 103 50.8 2.1e-13 1 No_clan
Cotton_A_37793_CDS 316 437 316 439 PF02880.16 PGM_PMM_III Domain 1 112 114 97.5 5.2e-28 1 No_clan
Cotton_A_37793_CDS 493 544 471 555 PF00408.20 PGM_PMM_IV Family 23 60 74 28.3 1.5e-06 1 No_clan
Cotton_A_16214_CDS 81 267 81 268 PF03770.16 IPK Family 1 196 197 152.3 1.4e-44 1 CL0016
Cotton_A_31049_CDS 130 230 130 232 PF02362.21 B3 Family 1 99 101 74.3 5.8e-21 1 CL0405
Cotton_A_31049_CDS 256 335 256 335 PF06507.13 Auxin_resp Family 1 83 83 106.8 5e-31 1 No_clan
Cotton_A_31049_CDS 560 614 542 620 PF02309.16 AUX_IAA Family 108 162 237 31.9 1.1e-07 1 CL0072
Cotton_A_31049_CDS 624 668 614 668 PF02309.16 AUX_IAA Family 193 237 237 27.9 2e-06 1 CL0072
Cotton_A_00970_CDS 14 110 13 121 PF00168.30 C2 Domain 2 94 103 40.5 2.7e-10 1 CL0154
Cotton_A_14362_CDS 45 84 43 86 PF12937.7 F-box-like Domain 4 43 48 37.8 1.3e-09 1 CL0271
Cotton_A_36719_CDS 66 115 65 116 PF00847.20 AP2 Domain 2 53 54 41.3 1.4e-10 1 CL0081
Cotton_A_36807_CDS 4 112 1 119 PF00078.27 RVT_1 Family 98 192 222 40.0 3.1e-10 1 CL0027
Cotton_A_09067_CDS 31 292 31 293 PF01301.19 Glyco_hydro_35 Domain 1 272 316 307.4 1.4e-91 1 CL0058
Cotton_A_09067_CDS 302 372 302 372 PF17834.1 GHD Domain 1 72 72 85.8 1.5e-24 1 CL0369
Cotton_A_09067_CDS 707 772 707 775 PF02140.18 Gal_Lectin Domain 1 68 80 44.7 1.4e-11 1 No_clan
Cotton_A_02390_CDS 230 272 230 273 PF06203.14 CCT Motif 1 43 44 59.1 3.2e-16 1 CL0281
Cotton_A_15080_CDS 7 53 7 54 PF13418.6 Kelch_4 Repeat 1 48 49 26.4 5.2e-06 1 CL0186
Cotton_A_15080_CDS 59 105 57 105 PF01344.25 Kelch_1 Repeat 3 46 46 23.1 4e-05 1 CL0186
Cotton_A_09962_CDS 40 165 40 165 PF00168.30 C2 Domain 1 103 103 91.5 3.6e-26 1 CL0154
Cotton_A_09962_CDS 364 398 363 398 PF00614.22 PLDc Family 2 28 28 35.5 7.2e-09 1 CL0479
Cotton_A_09962_CDS 695 721 694 721 PF00614.22 PLDc Family 2 28 28 30.0 3.8e-07 1 CL0479
Cotton_A_09962_CDS 768 838 768 839 PF12357.8 PLD_C Family 1 71 72 105.1 1.3e-30 1 No_clan
Cotton_A_28444_CDS 140 163 140 167 PF01535.20 PPR Family 4 27 31 12.9 0.1 1 CL0020
Cotton_A_28444_CDS 168 198 168 198 PF01535.20 PPR Family 1 31 31 21.4 0.0002 1 CL0020
Cotton_A_28444_CDS 241 261 239 266 PF01535.20 PPR Family 4 24 31 10.0 0.84 1 CL0020
Cotton_A_28444_CDS 268 313 266 315 PF13041.6 PPR_2 Repeat 3 48 50 32.0 1.1e-07 1 CL0020
Cotton_A_28444_CDS 371 400 371 401 PF01535.20 PPR Family 1 30 31 15.5 0.015 1 CL0020
Cotton_A_28444_CDS 468 516 468 517 PF13041.6 PPR_2 Repeat 1 49 50 42.9 4e-11 1 CL0020
Cotton_A_28444_CDS 569 617 569 618 PF13041.6 PPR_2 Repeat 1 49 50 47.6 1.4e-12 1 CL0020
Cotton_A_28444_CDS 644 667 642 669 PF01535.20 PPR Family 3 26 31 10.3 0.69 1 CL0020
Cotton_A_34183_CDS 53 507 52 512 PF00067.22 p450 Domain 2 458 463 279.9 3.5e-83 1 No_clan
Cotton_A_16057_CDS 11 284 9 285 PF14576.6 SEO_N Family 5 286 287 347.1 6.7e-104 1 No_clan
Cotton_A_16057_CDS 443 670 441 671 PF14577.6 SEO_C Family 3 231 232 282.5 2.3e-84 1 No_clan
Cotton_A_28094_CDS 157 185 156 186 PF01535.20 PPR Family 2 30 31 17.1 0.0048 1 CL0020
Cotton_A_28094_CDS 199 220 192 220 PF01535.20 PPR Family 10 31 31 15.0 0.022 1 CL0020
Cotton_A_28094_CDS 227 268 222 271 PF13041.6 PPR_2 Repeat 6 47 50 45.7 5.6e-12 1 CL0020
Cotton_A_28094_CDS 292 339 292 341 PF13041.6 PPR_2 Repeat 1 48 50 60.0 1.8e-16 1 CL0020
Cotton_A_28094_CDS 366 410 362 411 PF13041.6 PPR_2 Repeat 5 49 50 38.5 9.9e-10 1 CL0020
Cotton_A_28094_CDS 430 462 430 462 PF12854.7 PPR_1 Repeat 2 34 34 31.5 1.1e-07 1 CL0020
Cotton_A_28094_CDS 472 501 471 501 PF01535.20 PPR Family 2 31 31 20.7 0.00033 1 CL0020
Cotton_A_22162_CDS 80 324 53 329 PF00481.21 PP2C Family 35 251 258 131.7 3.6e-38 1 CL0238
Cotton_A_01617_CDS 118 276 69 283 PF00780.22 CNH Family 94 268 275 63.0 3.4e-17 1 No_clan
Cotton_A_01617_CDS 491 598 491 598 PF10366.9 Vps39_1 Family 1 108 108 89.7 1.4e-25 1 CL0020
Cotton_A_01617_CDS 834 942 834 943 PF10367.9 Vps39_2 Domain 1 108 109 99.7 1.2e-28 1 No_clan
Cotton_A_18432_CDS 6 116 5 116 PF13881.6 Rad60-SLD_2 Domain 2 111 111 143.5 2.5e-42 1 CL0072
Cotton_A_33719_CDS 7 104 7 105 PF03195.14 LOB Family 1 98 99 143.0 3.4e-42 1 No_clan
Cotton_A_00821_CDS 42 80 42 83 PF12937.7 F-box-like Domain 1 40 48 27.5 2.2e-06 1 CL0271
Cotton_A_00821_CDS 170 214 170 215 PF01344.25 Kelch_1 Repeat 1 45 46 48.6 4.3e-13 1 CL0186
Cotton_A_00821_CDS 218 265 217 265 PF01344.25 Kelch_1 Repeat 2 46 46 41.6 6.5e-11 1 CL0186
Cotton_A_00923_CDS 90 149 89 149 PF13710.6 ACT_5 Domain 2 62 62 44.8 8.3e-12 1 CL0070
Cotton_A_00923_CDS 176 209 175 210 PF10369.9 ALS_ss_C Family 40 73 74 32.2 9e-08 1 CL0070
Cotton_A_00923_CDS 289 350 289 351 PF13710.6 ACT_5 Domain 1 61 62 40.8 1.5e-10 1 CL0070
Cotton_A_00923_CDS 362 434 362 435 PF10369.9 ALS_ss_C Family 1 73 74 91.4 3e-26 1 CL0070
Cotton_A_01348_CDS 37 66 37 77 PF08240.12 ADH_N Domain 1 33 109 22.8 6.3e-05 1 CL0296
Cotton_A_34931_CDS 13 259 13 259 PF06813.13 Nodulin-like Family 1 250 250 322.5 1.8e-96 1 CL0015
Cotton_A_22194_CDS 109 161 109 161 PF07985.12 SRR1 Domain 1 55 55 46.6 2.6e-12 1 No_clan
Cotton_A_31726_CDS 14 174 14 175 PF00071.22 Ras Domain 1 161 162 202.1 4.1e-60 1 CL0023
Cotton_A_17532_CDS 1 378 1 392 PF05097.12 DUF688 Family 1 342 446 321.9 8e-96 1 No_clan
Cotton_A_17532_CDS 397 537 372 563 PF05097.12 DUF688 Family 304 441 446 52.4 4.8e-14 1 No_clan
Cotton_A_05230_CDS 102 144 101 144 PF00468.17 Ribosomal_L34 Family 2 44 44 68.8 2.8e-19 1 No_clan
Cotton_A_20686_CDS 154 198 151 199 PF00010.26 HLH Domain 5 52 53 30.9 1.9e-07 1 No_clan
Cotton_A_34906_CDS 59 408 59 416 PF11744.8 ALMT Family 1 352 469 506.1 9.5e-152 1 CL0307
Cotton_A_36863_CDS 2 101 1 101 PF03087.14 DUF241 Family 136 234 234 89.3 3.2e-25 1 CL0133
Cotton_A_05520_CDS 123 274 122 274 PF01603.20 B56 Family 264 415 415 207.5 3.3e-61 1 CL0020
Cotton_A_28000_CDS 812 859 811 860 PF13920.6 zf-C3HC4_3 Domain 2 49 50 41.9 6.6e-11 1 CL0229
Cotton_A_36203_CDS 6 140 6 142 PF01090.19 Ribosomal_S19e Family 1 135 137 195.1 3.7e-58 1 CL0123
Cotton_A_00299_CDS 241 291 241 291 PF14237.6 GYF_2 Domain 1 50 50 39.6 3.4e-10 1 CL0673
Cotton_A_29886_CDS 59 157 59 157 PF04749.17 PLAC8 Family 1 99 99 96.0 2.1e-27 1 No_clan
Cotton_A_24218_CDS 2 128 1 128 PF00190.22 Cupin_1 Domain 26 151 151 136.4 5.8e-40 1 CL0029
Cotton_A_27804_CDS 134 149 103 149 PF00432.21 Prenyltrans Repeat 29 44 44 7.9 2.6 1 CL0059
Cotton_A_27804_CDS 164 195 155 199 PF00432.21 Prenyltrans Repeat 10 40 44 13.3 0.053 1 CL0059
Cotton_A_27804_CDS 204 247 204 247 PF00432.21 Prenyltrans Repeat 1 44 44 56.2 2e-15 1 CL0059
Cotton_A_18082_CDS 14 62 14 62 PF00249.31 Myb_DNA-binding Domain 1 46 46 49.8 2.9e-13 1 CL0123
Cotton_A_18082_CDS 69 113 68 115 PF00249.31 Myb_DNA-binding Domain 2 44 46 36.8 3.3e-09 1 CL0123
Cotton_A_18047_CDS 46 191 45 192 PF04043.15 PMEI Domain 2 153 154 72.3 5.2e-20 1 No_clan
Cotton_A_18047_CDS 246 542 246 544 PF01095.19 Pectinesterase Family 1 296 298 412.7 5.4e-124 1 CL0268
Cotton_A_01249_CDS 281 326 278 326 PF00010.26 HLH Domain 5 53 53 37.8 1.4e-09 1 No_clan
Cotton_A_38359_CDS 28 145 20 148 PF05096.12 Glu_cyclase_2 Family 8 123 251 110.5 9e-32 1 CL0186
Cotton_A_19036_CDS 36 109 10 117 PF04720.12 PDDEXK_6 Family 43 122 221 33.7 3.4e-08 1 No_clan
Cotton_A_11494_CDS 64 135 64 135 PF04640.14 PLATZ Family 1 82 82 88.6 3.1e-25 1 No_clan
Cotton_A_01842_CDS 106 224 105 225 PF00622.28 SPRY Family 2 119 120 64.7 8e-18 1 CL0004
Cotton_A_01842_CDS 306 448 304 453 PF10607.9 CLTH Domain 3 142 148 70.2 1.6e-19 1 No_clan
Cotton_A_09292_CDS 216 305 216 305 PF17958.1 EF-hand_13 Domain 1 90 90 118.0 1.2e-34 1 CL0220
Cotton_A_09292_CDS 320 420 320 421 PF13499.6 EF-hand_7 Domain 1 70 71 66.2 2.6e-18 1 CL0220
Cotton_A_18230_CDS 42 285 40 285 PF00141.23 peroxidase Domain 3 229 229 260.3 1.6e-77 1 CL0617
Cotton_A_28686_CDS 49 112 49 113 PF13499.6 EF-hand_7 Domain 1 70 71 35.7 8.9e-09 1 CL0220
Cotton_A_03463_CDS 75 203 75 204 PF13671.6 AAA_33 Domain 1 142 143 45.1 1.1e-11 1 CL0023
Cotton_A_03463_CDS 410 481 410 500 PF01661.21 Macro Domain 1 67 118 28.1 1.6e-06 1 CL0223
Cotton_A_03463_CDS 554 666 551 666 PF11969.8 DcpS_C Family 4 114 114 89.8 1.6e-25 1 CL0265
Cotton_A_03463_CDS 671 725 671 727 PF16278.5 zf-C2HE Domain 1 60 64 35.8 8.4e-09 1 CL0361
Cotton_A_05960_CDS 12 107 4 107 PF00125.24 Histone Domain 36 131 131 76.3 2.7e-21 1 CL0012
Cotton_A_05960_CDS 108 137 108 138 PF16211.5 Histone_H2A_C Family 1 31 35 41.9 6.1e-11 1 No_clan
Cotton_A_31200_CDS 45 131 44 131 PF01221.18 Dynein_light Domain 2 86 86 100.8 4e-29 1 No_clan
Cotton_A_27814_CDS 14 62 14 62 PF00249.31 Myb_DNA-binding Domain 1 46 46 52.9 3.1e-14 1 CL0123
Cotton_A_27814_CDS 69 111 68 113 PF00249.31 Myb_DNA-binding Domain 2 44 46 39.2 6e-10 1 CL0123
Cotton_A_31571_CDS 1 252 1 252 PF03619.16 Solute_trans_a Family 31 265 265 251.6 9e-75 1 No_clan
Cotton_A_38604_CDS 14 163 13 168 PF04690.13 YABBY Family 2 155 162 189.7 5.3e-56 1 CL0114
Cotton_A_29527_CDS 66 139 66 182 PF01985.21 CRS1_YhbY Domain 1 67 84 52.1 5.7e-14 1 No_clan
Cotton_A_12239_CDS 9 70 8 72 PF13499.6 EF-hand_7 Domain 2 69 71 58.4 7e-16 1 CL0220
Cotton_A_12239_CDS 87 149 86 150 PF13499.6 EF-hand_7 Domain 2 70 71 50.1 2.9e-13 1 CL0220
Cotton_A_03318_CDS 2 98 1 102 PF07727.14 RVT_2 Family 66 161 242 69.8 2.6e-19 1 CL0027
Cotton_A_23249_CDS 149 193 147 197 PF07716.15 bZIP_2 Family 3 46 54 24.7 1.8e-05 1 CL0018
Cotton_A_23249_CDS 245 318 244 320 PF14144.6 DOG1 Family 2 75 77 97.9 3e-28 1 No_clan
Cotton_A_31770_CDS 17 153 15 154 PF04970.13 LRAT Domain 3 126 127 97.5 6.9e-28 1 CL0125
Cotton_A_16394_CDS 54 110 54 110 PF08246.12 Inhibitor_I29 Domain 1 58 58 40.3 3.3e-10 1 No_clan
Cotton_A_16394_CDS 163 243 156 249 PF00112.23 Peptidase_C1 Domain 57 142 218 61.4 1.3e-16 1 CL0125
Cotton_A_16394_CDS 251 301 245 303 PF00112.23 Peptidase_C1 Domain 172 216 218 51.1 1.7e-13 1 CL0125
Cotton_A_10621_CDS 1 24 1 25 PF01535.20 PPR Family 7 30 31 14.1 0.043 1 CL0020
Cotton_A_10621_CDS 35 76 35 76 PF13041.6 PPR_2 Repeat 9 50 50 44.1 1.7e-11 1 CL0020
Cotton_A_10621_CDS 94 123 93 125 PF12854.7 PPR_1 Repeat 2 31 34 44.2 1.1e-11 1 CL0020
Cotton_A_04958_CDS 34 497 34 504 PF00067.22 p450 Domain 1 456 463 311.7 7.7e-93 1 No_clan
Cotton_A_36799_CDS 197 249 197 249 PF07973.14 tRNA_SAD Domain 1 44 44 50.4 1.7e-13 1 CL0094
Cotton_A_36799_CDS 355 562 349 562 PF00587.25 tRNA-synt_2b Domain 7 179 179 145.8 1.3e-42 1 CL0040
Cotton_A_36799_CDS 574 662 574 663 PF03129.20 HGTP_anticodon Domain 1 93 94 63.0 2.2e-17 1 CL0458
Cotton_A_04784_CDS 118 209 116 234 PF01553.21 Acyltransferase Family 3 101 135 51.0 1e-13 1 CL0228
Cotton_A_24566_CDS 7 69 7 69 PF05641.12 Agenet Domain 1 61 61 70.2 1.5e-19 1 CL0049
Cotton_A_18108_CDS 174 350 174 350 PF06911.12 Senescence Family 1 183 183 148.8 2.1e-43 1 No_clan
Cotton_A_12171_CDS 9 99 8 123 PF18052.1 Rx_N Domain 2 84 93 87.2 6.5e-25 1 No_clan
Cotton_A_12171_CDS 190 402 186 408 PF00931.22 NB-ARC Domain 5 222 252 159.0 1.1e-46 1 CL0023
Cotton_A_38296_CDS 163 237 154 284 PF00931.22 NB-ARC Domain 11 58 252 27.6 1.5e-06 1 CL0023
Cotton_A_39335_CDS 31 98 30 114 PF02788.16 RuBisCO_large_N Domain 2 69 120 76.0 2.6e-21 1 No_clan
Cotton_A_30875_CDS 1 140 1 142 PF01217.20 Clat_adaptor_s Domain 1 140 142 181.8 6e-54 1 CL0212
Cotton_A_07424_CDS 478 539 478 541 PF13432.6 TPR_16 Family 1 65 68 15.7 0.018 1 CL0020
Cotton_A_07424_CDS 607 640 607 640 PF13181.6 TPR_8 Repeat 1 34 34 19.4 0.00084 1 CL0020
Cotton_A_07424_CDS 676 707 675 708 PF00515.28 TPR_1 Repeat 2 33 34 33.5 2.3e-08 1 CL0020
Cotton_A_27153_CDS 31 115 31 116 PF01301.19 Glyco_hydro_35 Domain 1 85 316 112.3 3.5e-32 1 CL0058
Cotton_A_32903_CDS 87 230 87 230 PF00258.25 Flavodoxin_1 Domain 1 143 143 113.6 8.3e-33 1 CL0042
Cotton_A_32903_CDS 288 510 286 510 PF00667.20 FAD_binding_1 Domain 3 222 222 246.2 2.8e-73 1 CL0076
Cotton_A_32903_CDS 547 659 547 660 PF00175.21 NAD_binding_1 Domain 1 108 109 54.2 1.9e-14 1 CL0091
Cotton_A_27990_CDS 168 609 168 609 PF12899.7 Glyco_hydro_100 Domain 1 435 435 708.0 3.8e-213 1 CL0059
Cotton_A_14158_CDS 156 259 156 260 PF14380.6 WAK_assoc Domain 1 103 104 70.7 1.4e-19 1 No_clan
Cotton_A_16485_CDS 253 299 252 301 PF13041.6 PPR_2 Repeat 2 48 50 39.3 5.6e-10 1 CL0020
Cotton_A_16485_CDS 327 352 326 354 PF01535.20 PPR Family 2 27 31 14.4 0.034 1 CL0020
Cotton_A_16485_CDS 426 550 426 550 PF14432.6 DYW_deaminase Family 1 127 127 127.3 3.1e-37 1 CL0109
Cotton_A_16110_CDS 39 88 38 89 PF00847.20 AP2 Domain 2 53 54 43.1 3.7e-11 1 CL0081
Cotton_A_13262_CDS 50 149 50 154 PF00763.23 THF_DHG_CYH Domain 1 99 116 103.6 7.5e-30 1 CL0603
Cotton_A_32254_CDS 28 68 27 70 PF06839.12 zf-GRF Domain 2 43 45 34.2 2e-08 1 CL0167
Cotton_A_07032_CDS 8 100 7 101 PF01248.26 Ribosomal_L7Ae Domain 2 94 95 86.7 6.7e-25 1 CL0101
Cotton_A_29488_CDS 68 221 67 257 PF00232.18 Glyco_hydro_1 Domain 122 277 453 107.3 6e-31 1 CL0058
Cotton_A_07394_CDS 41 373 40 382 PF03016.15 Exostosin Family 2 292 300 285.4 4.7e-85 1 No_clan
Cotton_A_08551_CDS 93 380 93 384 PF02383.18 Syja_N Family 1 309 320 249.6 4.7e-74 1 CL0031
Cotton_A_05183_CDS 8 76 8 80 PF04564.15 U-box Domain 1 69 73 65.6 3.4e-18 1 CL0229
Cotton_A_05782_CDS 305 471 305 473 PF07000.11 DUF1308 Domain 1 156 164 99.7 1.6e-28 1 CL0280
Cotton_A_31138_CDS 3 316 2 318 PF08267.12 Meth_synt_1 Domain 2 311 313 393.4 8.3e-118 1 CL0160
Cotton_A_31138_CDS 432 755 432 756 PF01717.18 Meth_synt_2 Domain 1 323 324 528.1 8.3e-159 1 CL0160
Cotton_A_21367_CDS 4 99 1 100 PF00931.22 NB-ARC Domain 151 251 252 39.5 3.6e-10 1 CL0023
Cotton_A_40204_CDS 43 85 42 85 PF13639.6 zf-RING_2 Domain 2 44 44 56.3 3e-15 1 CL0229
Cotton_A_29232_CDS 41 117 41 132 PF12796.7 Ank_2 Repeat 1 65 83 36.1 7.4e-09 1 CL0465
Cotton_A_29232_CDS 140 194 140 195 PF13637.6 Ank_4 Repeat 1 49 55 39.8 4.8e-10 1 CL0465
Cotton_A_04721_CDS 73 178 73 178 PF01453.24 B_lectin Domain 1 105 105 136.0 6e-40 1 No_clan
Cotton_A_04721_CDS 210 318 210 318 PF00954.20 S_locus_glycop Domain 1 111 111 112.1 1.8e-32 1 No_clan
Cotton_A_04721_CDS 339 405 339 405 PF08276.11 PAN_2 Domain 1 67 67 69.3 2.3e-19 1 CL0168
Cotton_A_04721_CDS 509 774 505 776 PF07714.17 Pkinase_Tyr Domain 5 257 259 160.4 4.9e-47 1 CL0016
Cotton_A_04721_CDS 778 821 778 821 PF11883.8 DUF3403 Family 1 46 46 32.3 7.7e-08 1 No_clan
Cotton_A_31048_CDS 29 107 29 108 PF03810.19 IBN_N Family 1 73 74 40.7 1.7e-10 1 CL0020
Cotton_A_31048_CDS 113 150 110 211 PF08389.12 Xpo1 Family 4 41 149 20.8 0.00031 1 CL0020
Cotton_A_31048_CDS 166 536 166 536 PF08506.10 Cse1 Family 1 370 370 457.2 3.5e-137 1 CL0020
Cotton_A_31048_CDS 537 967 537 968 PF03378.15 CAS_CSE1 Family 1 442 443 539.8 3.9e-162 1 CL0020
Cotton_A_12284_CDS 66 129 66 164 PF00636.26 Ribonuclease_3 Family 1 64 105 53.2 3.8e-14 1 CL0539
Cotton_A_12284_CDS 162 270 141 271 PF03152.14 UFD1 Family 66 171 173 87.5 6.7e-25 1 CL0402
Cotton_A_01349_CDS 37 148 37 148 PF08240.12 ADH_N Domain 1 109 109 106.0 9.1e-31 1 CL0296
Cotton_A_01349_CDS 188 319 188 321 PF00107.26 ADH_zinc_N Family 1 128 130 86.8 1.2e-24 1 CL0063
Cotton_A_20484_CDS 95 577 90 577 PF03055.15 RPE65 Family 7 463 463 288.2 1.5e-85 1 No_clan
Cotton_A_06163_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 56.5 2.3e-15 1 CL0123
Cotton_A_06163_CDS 67 111 67 112 PF00249.31 Myb_DNA-binding Domain 1 45 46 53.2 2.5e-14 1 CL0123
Cotton_A_28111_CDS 25 70 25 94 PF04431.13 Pec_lyase_N Family 1 46 56 48.7 6.7e-13 1 No_clan
Cotton_A_28111_CDS 172 352 163 353 PF00544.19 Pec_lyase_C Domain 32 210 211 76.3 2.4e-21 1 CL0268
Cotton_A_22225_CDS 1 284 1 285 PF00282.19 Pyridoxal_deC Domain 91 374 375 278.3 7.5e-83 1 CL0061
Cotton_A_38687_CDS 12 96 9 128 PF18052.1 Rx_N Domain 4 88 93 84.9 3.5e-24 1 No_clan
Cotton_A_38687_CDS 167 412 166 413 PF00931.22 NB-ARC Domain 2 251 252 136.6 8.1e-40 1 CL0023
Cotton_A_04727_CDS 45 165 45 167 PF13456.6 RVT_3 Domain 1 122 124 118.3 1.7e-34 1 CL0219
Cotton_A_20732_CDS 80 104 79 105 PF13912.6 zf-C2H2_6 Domain 2 26 27 45.6 4.7e-12 1 CL0361
Cotton_A_20732_CDS 130 153 129 155 PF13912.6 zf-C2H2_6 Domain 2 25 27 48.0 8.5e-13 1 CL0361
Cotton_A_00388_CDS 62 468 59 468 PF00854.21 PTR2 Family 14 395 395 232.0 1e-68 1 CL0015
Cotton_A_06988_CDS 36 330 36 332 PF16363.5 GDP_Man_Dehyd Domain 1 330 332 184.7 3e-54 1 CL0063
Cotton_A_10847_CDS 10 57 10 57 PF00319.18 SRF-TF Domain 1 48 48 86.0 8.4e-25 1 No_clan
Cotton_A_10847_CDS 83 170 76 171 PF01486.17 K-box Family 5 92 93 87.5 5.1e-25 1 No_clan
Cotton_A_17471_CDS 4 233 4 233 PF06888.12 Put_Phosphatase Family 1 234 234 311.0 4.4e-93 1 CL0137
Cotton_A_07568_CDS 58 99 57 99 PF02892.15 zf-BED Domain 2 44 44 23.6 3.9e-05 1 CL0361
Cotton_A_07568_CDS 431 504 429 530 PF14372.6 DUF4413 Family 3 77 100 29.9 5.4e-07 1 No_clan
Cotton_A_07568_CDS 562 641 562 642 PF05699.14 Dimer_Tnp_hAT Domain 1 85 86 80.0 8.2e-23 1 No_clan
Cotton_A_02605_CDS 9 80 9 80 PF08079.12 Ribosomal_L30_N Domain 1 72 72 88.7 2.2e-25 1 No_clan
Cotton_A_02605_CDS 85 135 85 135 PF00327.20 Ribosomal_L30 Domain 1 51 51 70.6 7.6e-20 1 No_clan
Cotton_A_31234_CDS 38 252 37 253 PF00112.23 Peptidase_C1 Domain 2 217 218 256.7 2.3e-76 1 CL0125
Cotton_A_31234_CDS 300 347 300 347 PF00396.18 Granulin Family 1 42 42 34.1 2.5e-08 1 No_clan
Cotton_A_26514_CDS 48 113 48 114 PF13456.6 RVT_3 Domain 1 66 124 25.1 1.2e-05 1 CL0219
Cotton_A_35360_CDS 113 544 113 544 PF00854.21 PTR2 Family 1 395 395 455.3 1.5e-136 1 CL0015
Cotton_A_29809_CDS 6 139 6 142 PF01090.19 Ribosomal_S19e Family 1 134 137 189.3 2.4e-56 1 CL0123
Cotton_A_13913_CDS 71 114 70 114 PF13639.6 zf-RING_2 Domain 2 44 44 47.2 2.1e-12 1 CL0229
Cotton_A_01010_CDS 27 272 27 272 PF13561.6 adh_short_C2 Domain 1 234 234 217.9 1.4e-64 1 CL0063
Cotton_A_13243_CDS 37 213 37 213 PF00350.23 Dynamin_N Domain 1 168 168 190.4 2.4e-56 1 CL0023
Cotton_A_13243_CDS 222 489 222 499 PF01031.20 Dynamin_M Family 1 271 285 215.3 9.5e-64 1 No_clan
Cotton_A_13243_CDS 514 605 513 606 PF02212.18 GED Family 2 91 92 66.9 1.3e-18 1 No_clan
Cotton_A_13243_CDS 763 804 726 816 PF01764.25 Lipase_3 Family 51 92 142 26.1 6.3e-06 1 CL0028
Cotton_A_10049_CDS 15 312 14 316 PF00361.20 Proton_antipo_M Family 2 289 293 290.7 1.1e-86 1 CL0425
Cotton_A_10049_CDS 321 469 321 469 PF01010.19 Proton_antipo_C Family 1 157 243 188.8 1.2e-55 1 No_clan
Cotton_A_14658_CDS 53 309 51 310 PF01263.20 Aldose_epim Family 3 300 301 157.1 6.2e-46 1 CL0103
Cotton_A_28337_CDS 104 156 103 156 PF14416.6 PMR5N Domain 2 53 53 77.8 5.7e-22 1 No_clan
Cotton_A_28337_CDS 157 448 157 448 PF13839.6 PC-Esterase Family 1 283 283 319.2 3e-95 1 CL0264
Cotton_A_24629_CDS 109 156 109 158 PF17232.2 Pep1_7 Family 1 49 82 27.0 4.6e-06 1 No_clan
Cotton_A_25805_CDS 41 228 28 234 PF01459.22 Porin_3 Family 80 266 270 98.9 3.4e-28 1 CL0193
Cotton_A_33021_CDS 10 43 10 43 PF06842.12 DUF1242 Family 1 35 35 58.5 4.1e-16 1 No_clan
Cotton_A_13204_CDS 33 421 33 421 PF00657.22 Lipase_GDSL Family 2 200 200 60.3 2.5e-16 1 CL0264
Cotton_A_26094_CDS 13 173 13 174 PF00071.22 Ras Domain 1 161 162 205.4 3.9e-61 1 CL0023
Cotton_A_01141_CDS 5 176 5 177 PF00025.21 Arf Domain 1 174 175 259.5 1e-77 1 CL0023
Cotton_A_20077_CDS 33 341 32 344 PF00657.22 Lipase_GDSL Family 2 197 200 52.1 7.7e-14 1 CL0264
Cotton_A_29653_CDS 23 249 18 249 PF03087.14 DUF241 Family 11 234 234 190.8 3.3e-56 1 CL0133
Cotton_A_25844_CDS 36 141 32 159 PF13589.6 HATPase_c_3 Domain 4 109 137 50.2 2.2e-13 1 CL0025
Cotton_A_25844_CDS 223 344 223 345 PF01119.19 DNA_mis_repair Family 1 118 119 107.8 2.5e-31 1 CL0329
Cotton_A_25844_CDS 440 728 439 728 PF16413.5 Mlh1_C Domain 2 270 270 306.4 1.7e-91 1 No_clan
Cotton_A_22290_CDS 1 131 1 132 PF00305.19 Lipoxygenase Domain 522 652 674 166.6 8.5e-49 1 No_clan
Cotton_A_14780_CDS 54 107 53 108 PF00646.33 F-box Domain 2 47 48 35.1 8.5e-09 1 CL0271
Cotton_A_14780_CDS 118 373 118 377 PF01167.18 Tub Domain 1 205 241 212.1 9.5e-63 1 CL0395
Cotton_A_13909_CDS 44 184 44 189 PF00069.25 Pkinase Domain 1 132 264 75.0 5.8e-21 1 CL0016
Cotton_A_13909_CDS 321 484 314 484 PF00069.25 Pkinase Domain 134 264 264 68.8 4.7e-19 1 CL0016
Cotton_A_27802_CDS 32 75 31 75 PF13639.6 zf-RING_2 Domain 2 44 44 44.9 1.1e-11 1 CL0229
Cotton_A_00683_CDS 10 77 3 78 PF02519.14 Auxin_inducible Family 22 89 90 86.0 1.4e-24 1 No_clan
Cotton_A_26899_CDS 233 251 232 254 PF08491.10 SE Family 2 20 276 23.6 2.2e-05 1 CL0063
Cotton_A_26899_CDS 252 396 250 400 PF08491.10 SE Family 74 216 276 163.3 6e-48 1 CL0063
Cotton_A_36105_CDS 3 68 3 75 PF13417.6 GST_N_3 Domain 1 62 75 33.9 3.2e-08 1 CL0172
Cotton_A_36105_CDS 171 218 168 264 PF13410.6 GST_C_2 Domain 4 51 69 30.8 2.1e-07 1 CL0497
Cotton_A_14989_CDS 14 139 13 147 PF02502.18 LacAB_rpiB Family 2 127 139 98.6 2.9e-28 1 No_clan
Cotton_A_14989_CDS 213 270 211 278 PF07883.11 Cupin_2 Domain 3 59 71 33.5 2.6e-08 1 CL0029
Cotton_A_41298_CDS 10 411 9 412 PF03547.18 Mem_trans Family 2 386 387 264.2 1.2e-78 1 CL0064
Cotton_A_35518_CDS 93 164 93 164 PF04640.14 PLATZ Family 1 82 82 97.2 6.5e-28 1 No_clan
Cotton_A_18125_CDS 11 144 11 144 PF02365.15 NAM Family 1 126 126 138.1 2.8e-40 1 No_clan
Cotton_A_21857_CDS 10 54 7 54 PF00319.18 SRF-TF Domain 4 48 48 43.8 1.3e-11 1 No_clan
Cotton_A_24749_CDS 19 70 19 71 PF00847.20 AP2 Domain 1 53 54 47.9 1.2e-12 1 CL0081
Cotton_A_40822_CDS 2 247 1 247 PF00109.26 ketoacyl-synt Domain 2 253 253 162.1 1.7e-47 1 CL0046
Cotton_A_40822_CDS 255 366 255 367 PF02801.22 Ketoacyl-synt_C Domain 1 117 118 105.2 2e-30 1 CL0046
Cotton_A_15208_CDS 62 155 61 156 PF01657.17 Stress-antifung Family 2 94 95 79.3 2.5e-22 1 No_clan
Cotton_A_15208_CDS 175 268 171 268 PF01657.17 Stress-antifung Family 7 95 95 53.9 2.2e-14 1 No_clan
Cotton_A_30509_CDS 149 221 146 230 PF03171.20 2OG-FeII_Oxy Domain 3 74 101 38.3 1.5e-09 1 CL0029
Cotton_A_02582_CDS 32 241 32 242 PF03181.15 BURP Family 1 214 215 235.8 3.8e-70 1 No_clan
Cotton_A_22663_CDS 23 52 15 53 PF02798.20 GST_N Domain 46 75 76 32.8 6.5e-08 1 CL0172
Cotton_A_15800_CDS 82 143 82 143 PF00226.31 DnaJ Domain 1 63 63 93.8 5e-27 1 CL0392
Cotton_A_15800_CDS 193 407 190 407 PF01556.18 DnaJ_C Domain 4 148 148 131.5 2.5e-38 1 No_clan
Cotton_A_15800_CDS 217 280 217 280 PF00684.19 DnaJ_CXXCXGXG Domain 1 67 67 43.8 2.4e-11 1 No_clan
Cotton_A_28664_CDS 47 404 45 405 PF01094.28 ANF_receptor Family 3 353 354 276.9 2.3e-82 1 CL0144
Cotton_A_28664_CDS 478 804 465 806 PF00497.20 SBP_bac_3 Domain 12 223 225 66.6 2.1e-18 1 CL0177
Cotton_A_28664_CDS 585 837 583 837 PF00060.26 Lig_chan Family 3 149 149 120.2 6.3e-35 1 CL0030
Cotton_A_06396_CDS 57 178 56 204 PF13847.6 Methyltransf_31 Domain 2 112 152 70.5 1.3e-19 1 CL0063
Cotton_A_40109_CDS 11 28 8 31 PF13202.6 EF-hand_5 Domain 5 22 25 23.3 2.9e-05 1 CL0220
Cotton_A_40109_CDS 74 137 73 137 PF13499.6 EF-hand_7 Domain 2 71 71 49.4 4.8e-13 1 CL0220
Cotton_A_07914_CDS 96 147 96 147 PF00010.26 HLH Domain 1 53 53 42.3 5.2e-11 1 No_clan
Cotton_A_13968_CDS 12 58 2 70 PF10200.9 Ndufs5 Family 31 80 96 21.9 0.00016 1 CL0351
Cotton_A_07820_CDS 3 75 3 75 PF06592.13 DUF1138 Family 1 73 73 153.4 1.2e-45 1 No_clan
Cotton_A_11769_CDS 26 78 26 78 PF04431.13 Pec_lyase_N Family 1 56 56 77.7 5.9e-22 1 No_clan
Cotton_A_11769_CDS 176 355 168 356 PF00544.19 Pec_lyase_C Domain 33 210 211 68.3 6.5e-19 1 CL0268
Cotton_A_17080_CDS 43 69 43 74 PF03470.14 zf-XS Domain 1 30 43 34.7 1.6e-08 1 No_clan
Cotton_A_17080_CDS 85 192 84 193 PF03468.14 XS Domain 2 112 113 102.9 1.2e-29 1 CL0221
Cotton_A_05438_CDS 5 442 2 442 PF02458.15 Transferase Family 4 434 434 207.1 3.8e-61 1 CL0149
Cotton_A_01208_CDS 128 411 127 412 PF03016.15 Exostosin Family 2 299 300 200.3 4e-59 1 No_clan
Cotton_A_05014_CDS 38 87 37 88 PF14416.6 PMR5N Domain 2 52 53 63.2 2e-17 1 No_clan
Cotton_A_05014_CDS 89 352 89 353 PF13839.6 PC-Esterase Family 1 282 283 318.1 6.7e-95 1 CL0264
Cotton_A_05593_CDS 60 133 58 134 PF02536.14 mTERF Family 3 77 314 28.4 7.5e-07 1 No_clan
Cotton_A_05593_CDS 119 332 116 333 PF02536.14 mTERF Family 99 313 314 114.9 3.4e-33 1 No_clan
Cotton_A_31644_CDS 10 82 10 82 PF02874.23 ATP-synt_ab_N Domain 1 69 69 77.0 1.2e-21 1 CL0275
Cotton_A_18690_CDS 25 344 25 344 PF00332.18 Glyco_hydro_17 Domain 1 313 313 312.4 4e-93 1 CL0058
Cotton_A_18690_CDS 380 451 380 452 PF07983.13 X8 Domain 1 75 76 80.6 1e-22 1 No_clan
Cotton_A_04096_CDS 61 83 61 83 PF02493.20 MORN Repeat 1 23 23 17.7 0.0023 1 CL0251
Cotton_A_04096_CDS 84 105 84 106 PF02493.20 MORN Repeat 1 22 23 25.9 5.8e-06 1 CL0251
Cotton_A_04096_CDS 107 129 107 129 PF02493.20 MORN Repeat 1 23 23 25.4 8.4e-06 1 CL0251
Cotton_A_04096_CDS 130 152 130 152 PF02493.20 MORN Repeat 1 23 23 13.2 0.062 1 CL0251
Cotton_A_04096_CDS 153 174 153 175 PF02493.20 MORN Repeat 1 22 23 30.6 1.9e-07 1 CL0251
Cotton_A_04096_CDS 176 198 176 198 PF02493.20 MORN Repeat 1 23 23 33.6 2.1e-08 1 CL0251
Cotton_A_04096_CDS 199 220 199 221 PF02493.20 MORN Repeat 1 22 23 20.3 0.00034 1 CL0251
Cotton_A_04096_CDS 449 742 448 743 PF01504.18 PIP5K Family 2 273 274 310.7 7.6e-93 1 CL0016
Cotton_A_13095_CDS 66 174 65 177 PF01426.18 BAH Domain 2 116 122 38.2 1.1e-09 1 No_clan
Cotton_A_13095_CDS 380 429 379 429 PF08711.11 Med26 Domain 2 53 53 43.9 1.8e-11 1 No_clan
Cotton_A_31681_CDS 41 126 41 148 PF02469.22 Fasciclin Domain 1 91 128 26.7 5.2e-06 1 No_clan
Cotton_A_22535_CDS 69 90 65 91 PF03110.14 SBP Domain 53 74 75 23.7 4.4e-05 1 No_clan
Cotton_A_36424_CDS 40 413 39 413 PF06258.11 Mito_fiss_Elm1 Family 2 309 309 430.4 3.4e-129 1 CL0113
Cotton_A_22242_CDS 95 399 93 401 PF00365.20 PFK Domain 3 282 284 202.8 6.6e-60 1 CL0240
Cotton_A_19487_CDS 284 492 283 493 PF14381.6 EDR1 Family 2 199 200 243.1 2.1e-72 1 CL0125
Cotton_A_19487_CDS 686 928 682 928 PF07714.17 Pkinase_Tyr Domain 13 259 259 208.3 1.2e-61 1 CL0016
Cotton_A_26986_CDS 233 282 233 282 PF07797.14 DUF1639 Family 1 50 50 94.8 2.1e-27 1 No_clan
Cotton_A_10126_CDS 1 112 1 112 PF07107.11 WI12 Domain 1 109 109 143.9 1.7e-42 1 CL0051
Cotton_A_17744_CDS 95 146 95 146 PF00010.26 HLH Domain 1 53 53 42.6 4.3e-11 1 No_clan
Cotton_A_20525_CDS 48 181 47 181 PF02469.22 Fasciclin Domain 2 128 128 73.2 2.2e-20 1 No_clan
Cotton_A_20525_CDS 288 408 269 408 PF02469.22 Fasciclin Domain 14 128 128 32.7 7.2e-08 1 No_clan
Cotton_A_00507_CDS 65 119 64 120 PF00046.29 Homeodomain Domain 2 56 57 64.7 5.2e-18 1 CL0123
Cotton_A_00507_CDS 122 155 121 156 PF02183.18 HALZ Coiled-coil 9 42 43 29.8 5.2e-07 1 No_clan
Cotton_A_09700_CDS 23 170 18 170 PF04535.12 DUF588 Domain 7 150 150 110.4 6.6e-32 1 CL0396
Cotton_A_35270_CDS 194 229 191 229 PF00400.32 WD40 Repeat 4 38 38 23.3 8.3e-05 1 CL0186
Cotton_A_35270_CDS 252 278 243 278 PF00400.32 WD40 Repeat 11 38 38 12.9 0.16 1 CL0186
Cotton_A_00236_CDS 14 291 13 292 PF00248.21 Aldo_ket_red Domain 2 293 294 169.4 9.5e-50 1 No_clan
Cotton_A_10964_CDS 7 86 7 104 PF05564.12 Auxin_repressed Family 1 65 118 35.0 1.9e-08 1 No_clan
Cotton_A_23218_CDS 23 69 23 70 PF00249.31 Myb_DNA-binding Domain 1 45 46 56.6 2.1e-15 1 CL0123
Cotton_A_23218_CDS 76 119 76 121 PF00249.31 Myb_DNA-binding Domain 1 44 46 52.8 3.4e-14 1 CL0123
Cotton_A_15061_CDS 149 240 148 241 PF13662.6 Toprim_4 Domain 2 88 89 70.8 9.9e-20 1 CL0413
Cotton_A_15061_CDS 304 547 304 557 PF03796.15 DnaB_C Domain 1 244 255 35.2 7.9e-09 1 CL0023
Cotton_A_10377_CDS 37 469 35 484 PF00067.22 p450 Domain 3 444 463 254.4 1.9e-75 1 No_clan
Cotton_A_10377_CDS 482 538 446 538 PF01066.21 CDP-OH_P_transf Family 20 66 66 39.3 8.1e-10 1 No_clan
Cotton_A_31532_CDS 15 245 15 247 PF06813.13 Nodulin-like Family 1 233 250 298.7 3.1e-89 1 CL0015
Cotton_A_37217_CDS 38 191 38 192 PF03018.14 Dirigent Family 1 147 148 134.6 2.2e-39 1 CL0650
Cotton_A_26263_CDS 10 133 9 134 PF02365.15 NAM Family 2 125 126 119.2 2e-34 1 No_clan
Cotton_A_39088_CDS 2 113 1 114 PF01490.18 Aa_trans Family 132 242 409 35.0 6.6e-09 1 CL0062
Cotton_A_36110_CDS 17 272 14 274 PF00494.19 SQS_PSY Domain 4 261 263 224.4 1.7e-66 1 CL0613
Cotton_A_01771_CDS 92 463 89 465 PF03222.13 Trp_Tyr_perm Family 4 392 394 235.9 7.6e-70 1 CL0062
Cotton_A_09220_CDS 96 251 96 253 PF03634.13 TCP Family 1 154 156 137.5 5.6e-40 1 No_clan
Cotton_A_16404_CDS 94 358 94 359 PF00561.20 Abhydrolase_1 Domain 1 256 257 90.3 1.6e-25 1 CL0028
Cotton_A_20455_CDS 239 349 237 351 PF01624.20 MutS_I Domain 3 111 113 107.2 5.4e-31 1 No_clan
Cotton_A_20455_CDS 359 503 357 510 PF05188.17 MutS_II Domain 3 130 137 45.3 1e-11 1 No_clan
Cotton_A_20455_CDS 526 741 526 741 PF05192.18 MutS_III Domain 1 191 191 116.6 1.6e-33 1 No_clan
Cotton_A_20455_CDS 810 1002 809 1005 PF00488.21 MutS_V Domain 2 185 188 248.5 4.8e-74 1 CL0023
Cotton_A_17477_CDS 8 128 8 128 PF01778.17 Ribosomal_L28e Family 1 115 115 124.8 2.8e-36 1 No_clan
Cotton_A_08777_CDS 23 262 8 279 PF05462.11 Dicty_CAR Family 20 254 305 46.2 3.3e-12 1 CL0192
Cotton_A_23668_CDS 42 284 41 286 PF00141.23 peroxidase Domain 2 227 229 238.3 8.4e-71 1 CL0617
Cotton_A_02319_CDS 99 187 98 188 PF13975.6 gag-asp_proteas Domain 2 91 92 37.7 2.2e-09 1 CL0129
Cotton_A_22828_CDS 17 98 4 101 PF01565.23 FAD_binding_4 Domain 46 131 139 24.8 1.4e-05 1 CL0077
Cotton_A_02876_CDS 6 222 5 226 PF00009.27 GTP_EFTU Domain 2 190 194 181.6 1.2e-53 1 CL0023
Cotton_A_02876_CDS 248 313 248 315 PF03144.25 GTP_EFTU_D2 Domain 1 72 74 52.6 4.6e-14 1 CL0575
Cotton_A_02876_CDS 322 429 321 430 PF03143.17 GTP_EFTU_D3 Domain 2 111 112 134.3 2e-39 1 No_clan
Cotton_A_24418_CDS 15 79 14 80 PF05498.11 RALF Family 2 64 65 89.2 2.6e-25 1 No_clan
Cotton_A_21227_CDS 81 247 73 261 PF06101.11 Vps62 Family 24 186 542 48.1 5.5e-13 1 No_clan
Cotton_A_21227_CDS 388 465 377 478 PF06101.11 Vps62 Family 100 180 542 31.4 6.3e-08 1 No_clan
Cotton_A_14278_CDS 34 204 33 204 PF03637.17 Mob1_phocein Family 2 169 169 278.5 2.1e-83 1 No_clan
Cotton_A_02690_CDS 114 222 113 231 PF04982.13 HPP Family 2 112 122 76.5 1.9e-21 1 CL0307
Cotton_A_39378_CDS 40 385 38 385 PF04724.13 Glyco_transf_17 Family 3 349 349 605.4 3e-182 1 No_clan
Cotton_A_30330_CDS 111 139 111 141 PF01535.20 PPR Family 1 29 31 30.8 1.9e-07 1 CL0020
Cotton_A_30330_CDS 143 169 142 171 PF01535.20 PPR Family 2 28 31 14.8 0.024 1 CL0020
Cotton_A_30330_CDS 244 292 243 292 PF13041.6 PPR_2 Repeat 2 50 50 42.7 4.8e-11 1 CL0020
Cotton_A_30330_CDS 317 342 316 344 PF01535.20 PPR Family 2 27 31 18.9 0.0013 1 CL0020
Cotton_A_05820_CDS 51 187 51 188 PF08536.11 Whirly Domain 1 135 136 177.7 9.3e-53 1 CL0609
Cotton_A_13112_CDS 37 136 36 182 PF00406.22 ADK Domain 2 101 151 120.4 6.6e-35 1 CL0023
Cotton_A_13112_CDS 133 199 126 201 PF00348.17 polyprenyl_synt Domain 156 222 256 65.1 4.9e-18 1 CL0613
Cotton_A_36107_CDS 57 307 56 313 PF00139.19 Lectin_legB Domain 2 241 249 213.7 3e-63 1 CL0004
Cotton_A_36107_CDS 398 553 396 567 PF00069.25 Pkinase Domain 3 154 264 110.4 9.3e-32 1 CL0016
Cotton_A_24431_CDS 23 201 23 202 PF12710.7 HAD Family 1 187 188 63.3 3.9e-17 1 CL0137
Cotton_A_24431_CDS 296 396 283 402 PF01553.21 Acyltransferase Family 12 123 135 26.2 4.9e-06 1 CL0228
Cotton_A_01932_CDS 37 392 37 393 PF04185.14 Phosphoesterase Family 1 355 356 362.3 2.7e-108 1 CL0088
Cotton_A_07193_CDS 21 146 13 161 PF10604.9 Polyketide_cyc2 Family 13 133 143 62.8 3.9e-17 1 CL0209
Cotton_A_26905_CDS 12 94 10 95 PF14389.6 Lzipper-MIP1 Family 4 83 84 82.9 1.5e-23 1 No_clan
Cotton_A_26905_CDS 261 395 260 395 PF04784.14 DUF547 Family 2 123 123 142.6 5.8e-42 1 No_clan
Cotton_A_37264_CDS 1 107 1 113 PF01490.18 Aa_trans Family 131 237 409 37.0 1.6e-09 1 CL0062
Cotton_A_29055_CDS 43 118 39 122 PF01190.17 Pollen_Ole_e_I Family 25 94 99 47.6 1.7e-12 1 CL0287
Cotton_A_26755_CDS 3 69 1 70 PF13456.6 RVT_3 Domain 56 123 124 44.1 1.6e-11 1 CL0219
Cotton_A_23516_CDS 23 942 22 956 PF02463.19 SMC_N Domain 2 187 220 81.6 5.5e-23 1 CL0023
Cotton_A_02134_CDS 84 195 82 197 PF02536.14 mTERF Family 3 118 314 47.0 1.6e-12 1 No_clan
Cotton_A_02134_CDS 154 308 153 309 PF02536.14 mTERF Family 154 313 314 109.9 1.1e-31 1 No_clan
Cotton_A_18233_CDS 35 344 35 345 PF00657.22 Lipase_GDSL Family 1 199 200 46.6 3.9e-12 1 CL0264
Cotton_A_22253_CDS 74 365 71 366 PF00579.25 tRNA-synt_1b Family 7 292 293 291.8 5.3e-87 1 CL0039
Cotton_A_24016_CDS 40 95 33 104 PF02002.17 TFIIE_alpha Family 15 70 105 28.4 1.1e-06 1 CL0123
Cotton_A_24595_CDS 2 51 1 51 PF00253.21 Ribosomal_S14 Family 2 54 54 61.1 6.4e-17 1 No_clan
Cotton_A_08150_CDS 112 398 112 412 PF03552.14 Cellulose_synt Family 1 290 722 282.7 6.8e-84 1 CL0110
Cotton_A_08150_CDS 422 735 407 739 PF03552.14 Cellulose_synt Family 389 700 722 169.5 1.2e-49 1 CL0110
Cotton_A_14421_CDS 30 219 29 220 PF06697.12 DUF1191 Family 2 182 183 209.4 3.7e-62 1 CL0661
Cotton_A_25704_CDS 83 431 82 431 PF04137.15 ERO1 Family 2 354 354 404.9 3.1e-121 1 No_clan
Cotton_A_12357_CDS 17 85 7 116 PF14551.6 MCM_N Domain 6 86 104 43.7 3.2e-11 1 No_clan
Cotton_A_12357_CDS 105 235 102 236 PF17207.3 MCM_OB Domain 3 125 126 106.6 7.6e-31 1 CL0021
Cotton_A_12357_CDS 273 495 272 495 PF00493.23 MCM Domain 2 224 224 318.5 1.6e-95 1 CL0023
Cotton_A_12357_CDS 552 635 551 638 PF17855.1 MCM_lid Domain 2 84 87 90.0 1e-25 1 CL0671
Cotton_A_36941_CDS 7 132 1 132 PF00067.22 p450 Domain 154 283 463 27.5 1.3e-06 1 No_clan
Cotton_A_07532_CDS 112 585 112 585 PF00759.19 Glyco_hydro_9 Domain 1 411 411 421.1 6.3e-126 1 CL0059
Cotton_A_26038_CDS 89 154 89 154 PF01106.17 NifU Family 1 67 67 92.8 1.1e-26 1 CL0232
Cotton_A_26038_CDS 170 232 170 232 PF01106.17 NifU Family 1 67 67 47.9 1.1e-12 1 CL0232
Cotton_A_25384_CDS 299 523 299 526 PF04172.16 LrgB Family 1 210 214 142.5 1.3e-41 1 No_clan
Cotton_A_16855_CDS 25 104 23 105 PF00352.21 TBP Domain 3 84 85 113.0 4.5e-33 1 CL0407
Cotton_A_16855_CDS 113 195 113 196 PF00352.21 TBP Domain 1 84 85 112.2 8.1e-33 1 CL0407
Cotton_A_04946_CDS 5 315 5 315 PF14476.6 Chloroplast_duf Family 1 320 320 521.1 8.3e-157 1 No_clan
Cotton_A_09291_CDS 1 224 1 236 PF01902.17 Diphthami_syn_2 Family 1 203 219 106.3 1.6e-30 1 CL0039
Cotton_A_09291_CDS 429 560 428 562 PF01042.21 Ribonuc_L-PSP Domain 4 119 121 35.6 7.6e-09 1 CL0534
Cotton_A_32448_CDS 17 143 16 143 PF02365.15 NAM Family 2 126 126 116.2 1.7e-33 1 No_clan
Cotton_A_20880_CDS 117 277 117 279 PF02518.26 HATPase_c Domain 1 110 112 44.9 1.4e-11 1 CL0025
Cotton_A_20880_CDS 282 775 281 789 PF00183.18 HSP90 Family 2 504 517 640.1 3.2e-192 1 No_clan
Cotton_A_05858_CDS 13 118 2 118 PF02519.14 Auxin_inducible Family 8 90 90 99.8 7e-29 1 No_clan
Cotton_A_00103_CDS 17 99 5 100 PF00120.24 Gln-synt_C Domain 72 153 345 39.2 4.1e-10 1 CL0286
Cotton_A_25335_CDS 90 390 87 392 PF00579.25 tRNA-synt_1b Family 4 290 293 259.6 3.6e-77 1 CL0039
Cotton_A_25335_CDS 432 471 427 471 PF01479.25 S4 Domain 9 48 48 31.5 1e-07 1 CL0492
Cotton_A_21305_CDS 22 234 22 237 PF00300.22 His_Phos_1 Domain 1 191 194 104.0 7.9e-30 1 CL0071
Cotton_A_21246_CDS 2 45 1 45 PF02966.16 DIM1 Domain 89 133 133 42.3 5.8e-11 1 CL0172
Cotton_A_02238_CDS 52 211 52 211 PF04387.14 PTPLA Family 1 164 164 165.1 1e-48 1 No_clan
Cotton_A_31216_CDS 65 323 65 323 PF00069.25 Pkinase Domain 1 264 264 249.2 4.3e-74 1 CL0016
Cotton_A_31216_CDS 371 429 368 431 PF13499.6 EF-hand_7 Domain 4 68 71 38.3 1.3e-09 1 CL0220
Cotton_A_31216_CDS 441 501 440 502 PF13499.6 EF-hand_7 Domain 2 70 71 49.9 3.2e-13 1 CL0220
Cotton_A_19029_CDS 149 331 144 333 PF00544.19 Pec_lyase_C Domain 29 209 211 72.8 2.9e-20 1 CL0268
Cotton_A_19029_CDS 563 630 476 634 PF03348.15 Serinc Family 347 416 429 46.4 2.7e-12 1 No_clan
Cotton_A_01591_CDS 39 61 35 61 PF01535.20 PPR Family 9 31 31 15.6 0.014 1 CL0020
Cotton_A_01591_CDS 63 77 62 78 PF01535.20 PPR Family 2 16 31 10.7 0.53 1 CL0020
Cotton_A_17725_CDS 7 47 2 47 PF02798.20 GST_N Domain 37 76 76 45.1 9.5e-12 1 CL0172
Cotton_A_17725_CDS 101 168 90 168 PF00043.25 GST_C Domain 27 93 93 38.1 1.3e-09 1 CL0497
Cotton_A_17725_CDS 231 339 231 339 PF00647.19 EF1G Domain 1 107 107 141.4 9.8e-42 1 No_clan
Cotton_A_20812_CDS 61 157 60 161 PF03168.13 LEA_2 Domain 2 97 101 28.0 2.4e-06 1 CL0159
Cotton_A_00329_CDS 45 438 45 439 PF01490.18 Aa_trans Family 1 408 409 277.3 1.7e-82 1 CL0062
Cotton_A_36348_CDS 58 303 41 306 PF00481.21 PP2C Family 32 255 258 132.8 1.7e-38 1 CL0238
Cotton_A_09661_CDS 275 325 274 325 PF00010.26 HLH Domain 2 53 53 46.6 2.5e-12 1 No_clan
Cotton_A_01311_CDS 337 361 336 362 PF07918.11 CAP160 Repeat 2 26 27 55.9 2.4e-15 1 No_clan
Cotton_A_27991_CDS 7 62 5 63 PF00403.26 HMA Domain 2 61 62 65.7 3.7e-18 1 No_clan
Cotton_A_02425_CDS 15 447 13 448 PF02458.15 Transferase Family 3 433 434 258.3 1e-76 1 CL0149
Cotton_A_22456_CDS 6 52 6 52 PF16891.5 STPPase_N Family 1 48 48 68.8 3.9e-19 1 No_clan
Cotton_A_22456_CDS 54 245 53 248 PF00149.28 Metallophos Domain 2 201 204 141.8 3.8e-41 1 CL0163
Cotton_A_01099_CDS 180 216 180 217 PF00320.27 GATA Domain 1 35 36 57.6 6.8e-16 1 CL0167
Cotton_A_23153_CDS 152 947 151 947 PF00311.17 PEPcase Family 2 795 795 998.9 1.6e-300 1 CL0151
Cotton_A_06379_CDS 21 423 18 429 PF13520.6 AA_permease_2 Family 4 423 425 108.1 4.7e-31 1 CL0062
Cotton_A_22863_CDS 5 70 5 71 PF13450.6 NAD_binding_8 Domain 1 67 68 62.8 2.5e-17 1 CL0063
Cotton_A_22863_CDS 613 885 611 886 PF02353.20 CMAS Family 3 272 273 268.4 6.3e-80 1 CL0063
Cotton_A_10169_CDS 54 114 51 115 PF13432.6 TPR_16 Family 4 67 68 15.8 0.017 1 CL0020
Cotton_A_10169_CDS 190 216 190 223 PF00515.28 TPR_1 Repeat 1 27 34 28.0 1.3e-06 1 CL0020
Cotton_A_10169_CDS 224 257 224 257 PF00515.28 TPR_1 Repeat 1 34 34 38.5 5.9e-10 1 CL0020
Cotton_A_10169_CDS 352 377 350 379 PF13374.6 TPR_10 Repeat 4 29 42 16.8 0.0046 1 CL0020
Cotton_A_10169_CDS 384 416 384 417 PF00515.28 TPR_1 Repeat 1 33 34 34.3 1.3e-08 1 CL0020
Cotton_A_10169_CDS 471 620 470 623 PF13844.6 Glyco_transf_41 Family 2 149 471 83.1 1.4e-23 1 CL0113
Cotton_A_10169_CDS 637 828 633 828 PF13844.6 Glyco_transf_41 Family 284 471 471 99.2 1.8e-28 1 CL0113
Cotton_A_35031_CDS 6 46 5 51 PF00319.18 SRF-TF Domain 2 42 48 54.4 6.4e-15 1 No_clan
Cotton_A_32668_CDS 20 99 20 99 PF04241.15 DUF423 Family 1 88 88 65.7 3.2e-18 1 No_clan
Cotton_A_08409_CDS 82 270 73 283 PF14576.6 SEO_N Family 41 233 287 243.2 3e-72 1 No_clan
Cotton_A_22003_CDS 31 232 31 233 PF01734.22 Patatin Family 1 203 204 78.2 9.3e-22 1 CL0323
Cotton_A_32257_CDS 5 142 4 143 PF03018.14 Dirigent Family 2 147 148 100.2 9.2e-29 1 CL0650
Cotton_A_18912_CDS 66 110 66 110 PF12023.8 DUF3511 Family 1 45 45 89.0 1.3e-25 1 No_clan
Cotton_A_08877_CDS 6 146 6 166 PF05834.12 Lycopene_cycl Family 1 154 380 28.3 9e-07 1 CL0063
Cotton_A_08877_CDS 207 249 203 283 PF01494.19 FAD_binding_3 Family 281 323 349 31.3 1.2e-07 1 CL0063
Cotton_A_15346_CDS 203 250 201 250 PF00010.26 HLH Domain 4 53 53 25.3 1.1e-05 1 No_clan
Cotton_A_10715_CDS 15 99 2 100 PF07173.12 GRDP-like Family 59 140 142 26.5 8.1e-06 1 No_clan
Cotton_A_10715_CDS 98 231 97 231 PF07173.12 GRDP-like Family 2 142 142 120.6 7.7e-35 1 No_clan
Cotton_A_19984_CDS 325 424 325 426 PF02362.21 B3 Family 1 99 101 58.8 3.7e-16 1 CL0405
Cotton_A_19984_CDS 595 637 595 638 PF07496.15 zf-CW Domain 1 47 48 49.1 4.2e-13 1 No_clan
Cotton_A_02000_CDS 32 133 30 134 PF00581.20 Rhodanese Domain 3 106 107 40.6 2.9e-10 1 CL0031
Cotton_A_24425_CDS 14 45 14 47 PF12854.7 PPR_1 Repeat 1 32 34 40.1 2.1e-10 1 CL0020
Cotton_A_24425_CDS 52 81 49 82 PF12854.7 PPR_1 Repeat 4 33 34 25.6 7e-06 1 CL0020
Cotton_A_24425_CDS 88 137 88 137 PF13041.6 PPR_2 Repeat 1 50 50 50.1 2.4e-13 1 CL0020
Cotton_A_01220_CDS 66 119 55 123 PF13259.6 DUF4050 Family 7 65 183 23.3 6.7e-05 1 No_clan
Cotton_A_01220_CDS 123 162 118 162 PF13259.6 DUF4050 Family 143 182 183 43.6 3.9e-11 1 No_clan
Cotton_A_05449_CDS 17 64 17 64 PF00249.31 Myb_DNA-binding Domain 1 46 46 56.9 1.7e-15 1 CL0123
Cotton_A_05449_CDS 70 112 70 114 PF00249.31 Myb_DNA-binding Domain 1 43 46 50.9 1.3e-13 1 CL0123
Cotton_A_04154_CDS 16 270 16 270 PF00069.25 Pkinase Domain 1 264 264 246.0 4e-73 1 CL0016
Cotton_A_04154_CDS 293 349 292 349 PF03822.14 NAF Domain 2 54 54 65.9 2.7e-18 1 CL0573
Cotton_A_35177_CDS 53 148 53 159 PF14226.6 DIOX_N Family 1 101 118 98.9 3e-28 1 CL0029
Cotton_A_35177_CDS 205 303 203 303 PF03171.20 2OG-FeII_Oxy Domain 3 101 101 85.5 2.8e-24 1 CL0029
Cotton_A_19949_CDS 24 98 24 100 PF03134.19 TB2_DP1_HVA22 Family 1 75 77 97.0 4.3e-28 1 No_clan
Cotton_A_09592_CDS 24 340 24 342 PF00332.18 Glyco_hydro_17 Domain 1 311 313 284.3 1.5e-84 1 CL0058
Cotton_A_18604_CDS 31 290 29 290 PF00069.25 Pkinase Domain 4 264 264 162.4 1.3e-47 1 CL0016
Cotton_A_18604_CDS 349 403 347 404 PF12202.8 OSR1_C Domain 3 63 64 27.5 2.8e-06 1 CL0487
Cotton_A_12539_CDS 60 113 57 115 PF00013.29 KH_1 Domain 4 58 66 42.9 3.2e-11 1 CL0007
Cotton_A_12539_CDS 169 236 169 238 PF00013.29 KH_1 Domain 1 64 66 45.7 4.3e-12 1 CL0007
Cotton_A_12539_CDS 322 373 321 376 PF00013.29 KH_1 Domain 2 53 66 45.8 4e-12 1 CL0007
Cotton_A_12539_CDS 403 471 403 472 PF00013.29 KH_1 Domain 1 65 66 48.3 6.5e-13 1 CL0007
Cotton_A_02937_CDS 135 164 134 164 PF01535.20 PPR Family 2 31 31 13.8 0.051 1 CL0020
Cotton_A_02937_CDS 170 210 170 215 PF13812.6 PPR_3 Repeat 17 57 63 24.3 2.4e-05 1 CL0020
Cotton_A_02937_CDS 225 283 224 286 PF13812.6 PPR_3 Repeat 2 60 63 50.3 1.8e-13 1 CL0020
Cotton_A_02937_CDS 358 387 357 387 PF01535.20 PPR Family 2 31 31 35.3 7e-09 1 CL0020
Cotton_A_02937_CDS 413 472 412 474 PF13812.6 PPR_3 Repeat 2 61 63 23.1 5.6e-05 1 CL0020
Cotton_A_02937_CDS 494 542 494 543 PF13041.6 PPR_2 Repeat 1 49 50 33.1 4.8e-08 1 CL0020
Cotton_A_26799_CDS 42 162 41 162 PF05743.13 UEV Domain 2 121 121 133.4 3.6e-39 1 CL0208
Cotton_A_26799_CDS 310 373 310 373 PF09454.10 Vps23_core Domain 1 64 64 86.0 1.2e-24 1 CL0596
Cotton_A_00747_CDS 29 540 25 543 PF01602.20 Adaptin_N Family 5 520 524 435.9 1.9e-130 1 CL0020
Cotton_A_00747_CDS 622 767 621 768 PF08752.10 COP-gamma_platf Domain 2 151 152 181.8 8.5e-54 1 CL0159
Cotton_A_00747_CDS 770 884 770 884 PF16381.5 Coatomer_g_Cpla Domain 1 115 115 125.7 9.4e-37 1 CL0545
Cotton_A_03309_CDS 89 229 82 230 PF01789.16 PsbP Domain 11 155 156 33.5 4.1e-08 1 CL0619
Cotton_A_26519_CDS 57 110 55 111 PF00046.29 Homeodomain Domain 3 56 57 58.3 4.8e-16 1 CL0123
Cotton_A_26519_CDS 112 153 112 154 PF02183.18 HALZ Coiled-coil 1 42 43 60.9 1e-16 1 No_clan
Cotton_A_06795_CDS 112 262 112 262 PF00005.27 ABC_tran Domain 1 137 137 91.4 6.7e-26 1 CL0023
Cotton_A_06795_CDS 418 627 418 627 PF01061.24 ABC2_membrane Family 1 210 210 123.8 6.3e-36 1 CL0181
Cotton_A_25139_CDS 31 263 28 265 PF01151.18 ELO Family 4 248 250 170.5 4.4e-50 1 No_clan
Cotton_A_20714_CDS 118 163 117 171 PF00170.21 bZIP_1 Family 2 47 64 32.9 5.2e-08 1 CL0018
Cotton_A_15771_CDS 47 92 47 98 PF12708.7 Pectate_lyase_3 Family 1 46 215 28.8 1e-06 1 CL0268
Cotton_A_35328_CDS 220 289 219 291 PF04564.15 U-box Domain 2 71 73 63.3 1.7e-17 1 CL0229
Cotton_A_35328_CDS 429 569 362 629 PF05804.12 KAP Family 253 398 708 23.5 1.4e-05 1 CL0020
Cotton_A_14199_CDS 95 337 95 341 PF12697.7 Abhydrolase_6 Domain 1 215 220 59.1 9e-16 1 CL0028
Cotton_A_20338_CDS 98 412 98 414 PF01546.28 Peptidase_M20 Family 1 205 207 116.6 1.2e-33 1 CL0035
Cotton_A_20338_CDS 211 305 207 309 PF07687.14 M20_dimer Domain 9 105 109 40.4 2.2e-10 1 No_clan
Cotton_A_25742_CDS 13 555 12 556 PF03321.13 GH3 Family 2 526 527 603.8 3.1e-181 1 CL0378
Cotton_A_12939_CDS 135 204 135 204 PF16040.5 DUF4792 Family 1 71 71 81.3 3.5e-23 1 No_clan
Cotton_A_12939_CDS 229 334 228 335 PF16041.5 DUF4793 Family 2 107 108 109.2 1.1e-31 1 No_clan
Cotton_A_12939_CDS 412 459 410 459 PF13920.6 zf-C3HC4_3 Domain 3 50 50 48.5 5.9e-13 1 CL0229
Cotton_A_02108_CDS 1 120 1 120 PF03087.14 DUF241 Family 85 211 234 67.5 1.5e-18 1 CL0133
Cotton_A_21757_CDS 294 543 294 543 PF07714.17 Pkinase_Tyr Domain 1 259 259 248.9 4.7e-74 1 CL0016
Cotton_A_11814_CDS 5 41 1 46 PF00646.33 F-box Domain 7 43 48 26.3 4.7e-06 1 CL0271
Cotton_A_23692_CDS 53 90 51 96 PF00646.33 F-box Domain 3 40 48 27.5 2e-06 1 CL0271
Cotton_A_23692_CDS 195 241 195 241 PF01344.25 Kelch_1 Repeat 1 46 46 37.9 9.8e-10 1 CL0186
Cotton_A_16936_CDS 6 167 3 171 PF01263.20 Aldose_epim Family 52 245 301 107.8 6.4e-31 1 CL0103
Cotton_A_16936_CDS 200 252 197 253 PF01263.20 Aldose_epim Family 248 300 301 43.7 2.1e-11 1 CL0103
Cotton_A_34419_CDS 5 99 4 122 PF01412.18 ArfGap Domain 2 92 117 116.8 5.1e-34 1 No_clan
Cotton_A_15196_CDS 34 98 33 149 PF08240.12 ADH_N Domain 2 64 109 34.8 1.2e-08 1 CL0296
Cotton_A_15196_CDS 198 327 198 327 PF13602.6 ADH_zinc_N_2 Domain 1 133 133 70.8 2.2e-19 1 CL0063
Cotton_A_34211_CDS 103 162 96 207 PF00566.18 RabGAP-TBC Family 46 104 215 45.4 7.2e-12 1 No_clan
Cotton_A_34211_CDS 253 355 239 363 PF00566.18 RabGAP-TBC Family 104 193 215 44.1 1.8e-11 1 No_clan
Cotton_A_28381_CDS 24 317 24 319 PF00248.21 Aldo_ket_red Domain 1 292 294 264.6 1e-78 1 No_clan
Cotton_A_07352_CDS 231 322 212 341 PF01494.19 FAD_binding_3 Family 149 247 349 26.6 3.4e-06 1 CL0063
Cotton_A_07352_CDS 376 455 358 461 PF01494.19 FAD_binding_3 Family 266 342 349 48.2 9e-13 1 CL0063
Cotton_A_21932_CDS 16 273 14 274 PF00378.20 ECH_1 Domain 3 249 251 155.5 1.5e-45 1 CL0127
Cotton_A_28203_CDS 56 88 55 88 PF03124.14 EXS Family 298 331 331 31.7 9.4e-08 1 CL0182
Cotton_A_03741_CDS 68 178 66 180 PF00271.31 Helicase_C Family 3 104 111 57.6 1.4e-15 1 CL0023
Cotton_A_26656_CDS 162 190 159 192 PF02151.19 UVR Family 6 34 36 21.8 0.00011 1 CL0671
Cotton_A_26656_CDS 209 305 208 307 PF08755.11 YccV-like Domain 2 96 98 91.1 4.9e-26 1 No_clan
Cotton_A_24010_CDS 7 172 6 172 PF06364.12 DUF1068 Family 2 168 168 278.7 1.5e-83 1 No_clan
Cotton_A_41229_CDS 91 192 70 196 PF00583.25 Acetyltransf_1 Family 19 112 117 31.1 2.2e-07 1 CL0257
Cotton_A_12465_CDS 296 340 294 340 PF08387.10 FBD Family 2 46 46 42.1 5.9e-11 1 No_clan
Cotton_A_16195_CDS 29 184 12 185 PF07859.13 Abhydrolase_3 Domain 61 210 211 123.7 9.3e-36 1 CL0028
Cotton_A_05511_CDS 85 145 84 145 PF00046.29 Homeodomain Domain 2 57 57 65.4 3e-18 1 CL0123
Cotton_A_21943_CDS 25 64 24 64 PF08263.12 LRRNT_2 Family 2 41 41 47.6 1.5e-12 1 No_clan
Cotton_A_21943_CDS 115 175 115 175 PF13855.6 LRR_8 Repeat 1 61 61 41.1 1.1e-10 1 CL0022
Cotton_A_21943_CDS 294 559 293 562 PF00069.25 Pkinase Domain 2 259 264 141.8 2.5e-41 1 CL0016
Cotton_A_23616_CDS 29 110 29 116 PF01190.17 Pollen_Ole_e_I Family 1 91 99 63.4 2e-17 1 CL0287
Cotton_A_10369_CDS 68 448 68 449 PF00916.20 Sulfate_transp Family 1 379 380 394.7 3.5e-118 1 CL0062
Cotton_A_10369_CDS 500 618 500 618 PF01740.21 STAS Domain 1 117 117 68.7 3.1e-19 1 CL0502
Cotton_A_27788_CDS 64 103 64 104 PF16078.5 2-oxogl_dehyd_N Family 1 40 41 58.3 4.1e-16 1 No_clan
Cotton_A_27788_CDS 242 567 241 570 PF00676.20 E1_dh Family 2 296 300 222.5 5.7e-66 1 CL0254
Cotton_A_21152_CDS 75 166 75 166 PF03101.15 FAR1 Domain 1 90 90 96.4 1.2e-27 1 CL0274
Cotton_A_36629_CDS 111 308 111 308 PF07816.11 DUF1645 Family 1 191 191 143.6 1e-41 1 No_clan
Cotton_A_02152_CDS 1 107 1 110 PF10354.9 DUF2431 Domain 23 131 168 86.3 2.8e-24 1 CL0063
Cotton_A_08466_CDS 165 227 155 228 PF17408.2 MCD_N Domain 24 84 85 39.6 4.1e-10 1 No_clan
Cotton_A_08466_CDS 232 510 231 511 PF05292.11 MCD Domain 2 256 257 297.7 7.4e-89 1 CL0257
Cotton_A_02233_CDS 19 317 18 321 PF08449.11 UAA Family 2 298 302 286.1 2.9e-85 1 CL0184
Cotton_A_34010_CDS 49 205 47 205 PF04759.13 DUF617 Family 3 163 163 183.0 4.2e-54 1 No_clan
Cotton_A_04717_CDS 190 416 189 417 PF03000.14 NPH3 Family 2 257 258 182.8 9.1e-54 1 No_clan
Cotton_A_22169_CDS 369 424 369 425 PF05383.17 La Domain 1 58 59 75.7 2.2e-21 1 CL0123
Cotton_A_29256_CDS 80 191 62 195 PF13249.6 SQHop_cyclase_N Domain 41 149 291 91.7 4.4e-26 1 CL0059
Cotton_A_33376_CDS 589 699 587 699 PF10193.9 Telomere_reg-2 Family 4 109 109 79.9 1.7e-22 1 No_clan
Cotton_A_13370_CDS 26 341 24 341 PF03662.14 Glyco_hydro_79n Domain 3 318 318 530.8 9.3e-160 1 CL0058
Cotton_A_35243_CDS 231 400 230 400 PF16994.5 Glyco_trans_4_5 Family 2 171 171 240.7 6.6e-72 1 CL0113
Cotton_A_35243_CDS 537 650 505 650 PF00534.20 Glycos_transf_1 Family 61 172 172 69.5 2.5e-19 1 CL0113
Cotton_A_15677_CDS 155 228 155 229 PF03110.14 SBP Domain 1 74 75 102.7 9.7e-30 1 No_clan
Cotton_A_04841_CDS 79 408 75 413 PF00295.17 Glyco_hydro_28 Domain 5 319 325 285.0 6.9e-85 1 CL0268
Cotton_A_27272_CDS 120 164 115 164 PF03107.16 C1_2 Domain 4 47 47 33.3 4.5e-08 1 CL0006
Cotton_A_26855_CDS 87 258 86 258 PF02222.22 ATP-grasp Family 2 171 171 187.3 1.7e-55 1 CL0179
Cotton_A_26855_CDS 285 347 285 348 PF17769.1 PurK_C Domain 1 55 56 63.1 1.4e-17 1 CL0105
Cotton_A_26855_CDS 367 506 367 508 PF00731.20 AIRC Domain 1 146 148 191.2 6.9e-57 1 No_clan
Cotton_A_21435_CDS 36 85 35 86 PF03939.13 Ribosomal_L23eN Family 2 50 51 70.1 1.3e-19 1 No_clan
Cotton_A_21435_CDS 95 157 94 167 PF00276.20 Ribosomal_L23 Family 2 76 86 48.7 7.2e-13 1 No_clan
Cotton_A_08594_CDS 13 593 12 593 PF02705.16 K_trans Family 2 534 534 621.6 1e-186 1 CL0062
Cotton_A_00697_CDS 42 114 42 138 PF07798.11 DUF1640 Family 1 73 175 86.8 1.7e-24 1 No_clan
Cotton_A_00697_CDS 156 234 155 234 PF07798.11 DUF1640 Family 97 175 175 109.6 1.7e-31 1 No_clan
Cotton_A_02439_CDS 38 63 38 64 PF13912.6 zf-C2H2_6 Domain 1 26 27 42.0 6.1e-11 1 CL0361
Cotton_A_02439_CDS 87 111 86 112 PF13912.6 zf-C2H2_6 Domain 2 26 27 45.1 6.7e-12 1 CL0361
Cotton_A_35731_CDS 60 161 58 161 PF02225.22 PA Family 3 89 89 42.3 5.9e-11 1 CL0364
Cotton_A_35731_CDS 498 517 495 517 PF12662.7 cEGF Domain 4 24 24 27.0 3.2e-06 1 CL0001
Cotton_A_24063_CDS 30 111 30 113 PF02359.18 CDC48_N Domain 1 84 85 81.0 5.3e-23 1 CL0332
Cotton_A_24063_CDS 132 195 130 196 PF02933.17 CDC48_2 Domain 3 63 64 45.0 6.8e-12 1 CL0402
Cotton_A_24063_CDS 245 374 245 375 PF00004.29 AAA Domain 1 131 132 163.3 3.7e-48 1 CL0023
Cotton_A_24063_CDS 397 438 397 441 PF17862.1 AAA_lid_3 Domain 1 42 45 54.4 8e-15 1 CL0671
Cotton_A_24063_CDS 518 651 518 651 PF00004.29 AAA Domain 1 132 132 159.3 6.4e-47 1 CL0023
Cotton_A_24063_CDS 674 713 673 718 PF17862.1 AAA_lid_3 Domain 2 40 45 47.4 1.2e-12 1 CL0671
Cotton_A_12809_CDS 65 214 63 214 PF00190.22 Cupin_1 Domain 3 151 151 159.3 5e-47 1 CL0029
Cotton_A_30879_CDS 1 267 1 267 PF03618.14 Kinase-PPPase Family 3 255 255 300.5 1.2e-89 1 CL0023
Cotton_A_25579_CDS 16 280 12 280 PF03619.16 Solute_trans_a Family 5 265 265 250.4 2.1e-74 1 No_clan
Cotton_A_18134_CDS 5 50 3 50 PF00249.31 Myb_DNA-binding Domain 3 46 46 57.7 9.8e-16 1 CL0123
Cotton_A_20372_CDS 57 155 57 155 PF08551.10 DUF1751 Domain 1 99 99 112.6 1e-32 1 CL0207
Cotton_A_06222_CDS 41 71 16 73 PF06404.12 PSK Family 56 88 90 46.2 7e-12 1 No_clan
Cotton_A_04934_CDS 50 381 50 381 PF01148.20 CTP_transf_1 Family 1 266 266 287.1 1.6e-85 1 CL0234
Cotton_A_20088_CDS 25 64 24 64 PF08263.12 LRRNT_2 Family 2 41 41 47.5 1.6e-12 1 No_clan
Cotton_A_20088_CDS 111 131 111 134 PF00560.33 LRR_1 Repeat 1 21 23 10.6 0.74 1 CL0022
Cotton_A_20088_CDS 212 271 212 272 PF13855.6 LRR_8 Repeat 1 60 61 36.7 2.5e-09 1 CL0022
Cotton_A_20088_CDS 386 445 385 445 PF13855.6 LRR_8 Repeat 2 61 61 35.3 7e-09 1 CL0022
Cotton_A_20088_CDS 650 669 649 671 PF00560.33 LRR_1 Repeat 2 21 23 10.1 1 1 CL0022
Cotton_A_20088_CDS 745 767 745 767 PF00560.33 LRR_1 Repeat 1 23 23 12.6 0.16 1 CL0022
Cotton_A_20088_CDS 859 880 858 880 PF00560.33 LRR_1 Repeat 2 23 23 11.8 0.29 1 CL0022
Cotton_A_02750_CDS 9 227 9 229 PF04654.12 DUF599 Family 1 208 210 240.5 1.2e-71 1 No_clan
Cotton_A_19980_CDS 27 66 26 66 PF08263.12 LRRNT_2 Family 2 41 41 42.3 6.8e-11 1 No_clan
Cotton_A_19980_CDS 119 138 119 140 PF00560.33 LRR_1 Repeat 1 20 23 10.0 1.1 1 CL0022
Cotton_A_19980_CDS 192 214 192 214 PF00560.33 LRR_1 Repeat 1 23 23 9.5 1.8 1 CL0022
Cotton_A_19980_CDS 288 310 288 310 PF00560.33 LRR_1 Repeat 1 23 23 9.4 1.9 1 CL0022
Cotton_A_19980_CDS 483 543 483 543 PF13855.6 LRR_8 Repeat 1 61 61 31.8 8.8e-08 1 CL0022
Cotton_A_19980_CDS 687 953 685 953 PF07714.17 Pkinase_Tyr Domain 3 259 259 148.5 2.1e-43 1 CL0016
Cotton_A_38490_CDS 142 239 141 240 PF03479.15 DUF296 Domain 2 105 107 74.1 1e-20 1 CL0615
Cotton_A_27875_CDS 29 189 29 189 PF01554.18 MatE Family 1 161 161 121.3 2.9e-35 1 CL0222
Cotton_A_27875_CDS 250 412 250 413 PF01554.18 MatE Family 1 160 161 118.0 3e-34 1 CL0222
Cotton_A_08935_CDS 30 580 29 583 PF03321.13 GH3 Family 2 524 527 683.6 2.1e-205 1 CL0378
Cotton_A_00963_CDS 3 77 3 77 PF08571.10 Yos1 Family 1 80 80 86.5 1.1e-24 1 No_clan
Cotton_A_00530_CDS 21 170 20 170 PF04949.13 Transcrip_act Family 2 154 154 252.5 1.3e-75 1 No_clan
Cotton_A_24298_CDS 21 285 14 285 PF03151.16 TPT Family 13 290 290 58.0 9.6e-16 1 CL0184
Cotton_A_10589_CDS 50 94 42 94 PF00471.20 Ribosomal_L33 Family 3 47 47 41.5 1.3e-10 1 CL0167
Cotton_A_35461_CDS 271 413 112 445 PF00201.18 UDPGT Family 263 390 499 63.4 1.7e-17 1 CL0113
Cotton_A_29245_CDS 38 278 37 278 PF00931.22 NB-ARC Domain 2 252 252 207.9 1.4e-61 1 CL0023
Cotton_A_29245_CDS 417 452 417 454 PF13855.6 LRR_8 Repeat 1 36 61 35.1 8.5e-09 1 CL0022
Cotton_A_22130_CDS 18 122 16 126 PF01398.21 JAB Family 3 114 118 77.5 7.9e-22 1 CL0366
Cotton_A_22130_CDS 173 279 173 280 PF13012.6 MitMem_reg Family 1 111 112 75.5 4e-21 1 No_clan
Cotton_A_24788_CDS 123 298 123 298 PF13679.6 Methyltransf_32 Domain 1 158 158 120.7 5.3e-35 1 CL0063
Cotton_A_03090_CDS 17 103 12 103 PF00125.24 Histone Domain 45 131 131 67.8 1.1e-18 1 CL0012
Cotton_A_03090_CDS 104 133 104 134 PF16211.5 Histone_H2A_C Family 1 31 35 41.4 8.8e-11 1 No_clan
Cotton_A_38444_CDS 100 320 99 320 PF01823.19 MACPF Domain 2 209 209 96.4 2.4e-27 1 CL0293
Cotton_A_37662_CDS 593 684 592 685 PF13646.6 HEAT_2 Family 2 87 88 45.0 1.1e-11 1 CL0020
Cotton_A_37662_CDS 779 944 779 944 PF18004.1 RPN2_C Domain 1 159 160 155.4 1.2e-45 1 No_clan
Cotton_A_05779_CDS 53 666 53 667 PF03169.15 OPT Family 1 615 616 509.8 1.1e-152 1 No_clan
Cotton_A_10443_CDS 1 73 1 74 PF04950.12 RIBIOP_C Family 233 291 292 63.9 1.5e-17 1 CL0575
Cotton_A_18522_CDS 76 125 76 125 PF13041.6 PPR_2 Repeat 1 50 50 35.0 1.2e-08 1 CL0020
Cotton_A_18522_CDS 146 195 146 195 PF13041.6 PPR_2 Repeat 1 50 50 52.7 3.7e-14 1 CL0020
Cotton_A_18522_CDS 216 264 216 265 PF13041.6 PPR_2 Repeat 1 49 50 56.3 2.6e-15 1 CL0020
Cotton_A_18522_CDS 283 315 282 315 PF12854.7 PPR_1 Repeat 2 34 34 38.2 8.3e-10 1 CL0020
Cotton_A_18522_CDS 321 369 321 370 PF13041.6 PPR_2 Repeat 1 49 50 61.4 6.8e-17 1 CL0020
Cotton_A_18522_CDS 387 418 387 420 PF12854.7 PPR_1 Repeat 1 32 34 53.5 1.4e-14 1 CL0020
Cotton_A_18522_CDS 425 452 422 454 PF12854.7 PPR_1 Repeat 4 31 34 35.5 6e-09 1 CL0020
Cotton_A_18522_CDS 461 510 461 510 PF13041.6 PPR_2 Repeat 1 50 50 58.7 4.8e-16 1 CL0020
Cotton_A_18522_CDS 527 560 527 560 PF12854.7 PPR_1 Repeat 1 34 34 57.4 8.6e-16 1 CL0020
Cotton_A_18522_CDS 570 599 569 599 PF01535.20 PPR Family 2 31 31 18.3 0.0019 1 CL0020
Cotton_A_26150_CDS 44 327 44 328 PF04674.12 Phi_1 Family 1 275 276 324.7 4.4e-97 1 No_clan
Cotton_A_28388_CDS 31 87 29 90 PF00170.21 bZIP_1 Family 5 61 64 40.7 1.9e-10 1 CL0018
Cotton_A_38175_CDS 71 155 71 156 PF03330.18 DPBB_1 Domain 1 82 83 79.7 1.5e-22 1 CL0199
Cotton_A_38175_CDS 167 244 167 244 PF01357.21 Pollen_allerg_1 Domain 1 80 80 97.6 3.2e-28 1 CL0159
Cotton_A_38068_CDS 39 486 38 491 PF00067.22 p450 Domain 2 458 463 330.7 1.3e-98 1 No_clan
Cotton_A_02962_CDS 10 51 9 56 PF00646.33 F-box Domain 2 43 48 30.0 3.4e-07 1 CL0271
Cotton_A_05292_CDS 83 140 83 141 PF05383.17 La Domain 1 58 59 80.0 9.9e-23 1 CL0123
Cotton_A_05292_CDS 173 246 173 249 PF00076.22 RRM_1 Domain 1 61 70 28.8 7.8e-07 1 CL0221
Cotton_A_10669_CDS 64 105 63 105 PF03790.13 KNOX1 Family 2 43 43 72.1 2.2e-20 1 No_clan
Cotton_A_10669_CDS 113 159 112 159 PF03791.13 KNOX2 Family 2 48 48 86.3 7e-25 1 No_clan
Cotton_A_10669_CDS 203 223 202 223 PF03789.13 ELK Domain 2 22 22 38.1 1.1e-09 1 No_clan
Cotton_A_10669_CDS 242 281 242 281 PF05920.11 Homeobox_KN Family 1 40 40 61.2 6.1e-17 1 CL0123
Cotton_A_35029_CDS 9 55 8 56 PF01679.17 Pmp3 Family 2 48 49 72.4 2.4e-20 1 No_clan
Cotton_A_28470_CDS 195 340 195 341 PF00004.29 AAA Domain 1 131 132 113.2 1.1e-32 1 CL0023
Cotton_A_02247_CDS 60 145 60 145 PF03330.18 DPBB_1 Domain 1 83 83 80.8 6.5e-23 1 CL0199
Cotton_A_02247_CDS 156 233 156 233 PF01357.21 Pollen_allerg_1 Domain 1 80 80 99.9 6.1e-29 1 CL0159
Cotton_A_14300_CDS 88 108 85 109 PF05678.14 VQ Motif 4 24 28 36.2 2.9e-09 1 No_clan
Cotton_A_28632_CDS 90 186 88 186 PF03171.20 2OG-FeII_Oxy Domain 4 101 101 91.8 3.1e-26 1 CL0029
Cotton_A_18118_CDS 115 188 105 208 PF00085.20 Thioredoxin Domain 11 84 103 53.6 1.7e-14 1 CL0172
Cotton_A_00527_CDS 86 172 82 174 PF03004.14 Transposase_24 Family 51 140 142 34.4 2e-08 1 No_clan
Cotton_A_23486_CDS 98 132 89 132 PF00400.32 WD40 Repeat 6 38 38 19.1 0.0018 1 CL0186
Cotton_A_23486_CDS 184 219 180 219 PF00400.32 WD40 Repeat 5 38 38 28.0 2.7e-06 1 CL0186
Cotton_A_23486_CDS 310 341 304 341 PF00400.32 WD40 Repeat 8 38 38 20.9 0.00046 1 CL0186
Cotton_A_23486_CDS 393 428 390 428 PF00400.32 WD40 Repeat 4 38 38 22.2 0.00018 1 CL0186
Cotton_A_05025_CDS 26 149 24 149 PF04859.12 DUF641 Family 3 128 128 135.1 1.6e-39 1 No_clan
Cotton_A_29477_CDS 56 220 55 225 PF01145.25 Band_7 Family 2 163 178 57.7 1.5e-15 1 CL0433
Cotton_A_15313_CDS 6 244 5 251 PF01370.21 Epimerase Family 2 230 241 82.6 2.9e-23 1 CL0063
Cotton_A_15313_CDS 326 446 326 457 PF01765.19 RRF Domain 1 121 162 138.6 1.7e-40 1 No_clan
Cotton_A_15313_CDS 470 519 468 519 PF01765.19 RRF Domain 112 161 162 37.0 3.2e-09 1 No_clan
Cotton_A_11471_CDS 109 191 109 192 PF14547.6 Hydrophob_seed Domain 1 84 85 94.9 2.5e-27 1 CL0482
Cotton_A_22543_CDS 130 230 130 233 PF02362.21 B3 Family 1 98 101 65.7 2.6e-18 1 CL0405
Cotton_A_22543_CDS 258 340 258 340 PF06507.13 Auxin_resp Family 1 83 83 95.3 2e-27 1 No_clan
Cotton_A_22543_CDS 618 667 614 670 PF02309.16 AUX_IAA Family 187 234 237 29.8 5e-07 1 CL0072
Cotton_A_37215_CDS 38 191 38 192 PF03018.14 Dirigent Family 1 147 148 133.3 5.5e-39 1 CL0650
Cotton_A_22746_CDS 116 492 113 492 PF03514.14 GRAS Family 4 374 374 332.8 2.4e-99 1 CL0063
Cotton_A_11829_CDS 228 354 228 355 PF00134.23 Cyclin_N Domain 1 126 127 132.9 5.1e-39 1 CL0065
Cotton_A_11829_CDS 357 471 357 476 PF02984.19 Cyclin_C Domain 1 110 119 106.9 6.5e-31 1 CL0065
Cotton_A_15580_CDS 261 418 231 424 PF10296.9 MMM1 Family 49 200 332 23.7 2.1e-05 1 No_clan
Cotton_A_28382_CDS 26 95 26 106 PF00248.21 Aldo_ket_red Domain 1 70 294 45.1 7.4e-12 1 No_clan
Cotton_A_28382_CDS 114 244 104 249 PF00248.21 Aldo_ket_red Domain 112 264 294 88.8 3.4e-25 1 No_clan
Cotton_A_32566_CDS 26 77 25 77 PF16594.5 ATP-synt_Z Family 2 53 53 91.0 2.3e-26 1 No_clan
Cotton_A_11060_CDS 2 165 2 165 PF03453.17 MoeA_N Family 1 157 157 138.0 2.1e-40 1 No_clan
Cotton_A_11060_CDS 178 325 178 327 PF00994.24 MoCF_biosynth Domain 1 142 144 89.8 1.2e-25 1 No_clan
Cotton_A_11060_CDS 341 416 340 417 PF03454.15 MoeA_C Domain 2 71 72 61.2 7.8e-17 1 No_clan
Cotton_A_11060_CDS 461 609 461 609 PF00994.24 MoCF_biosynth Domain 1 144 144 116.3 8.2e-34 1 No_clan
Cotton_A_39225_CDS 3 211 3 212 PF00091.25 Tubulin Domain 1 196 197 236.5 2.8e-70 1 CL0566
Cotton_A_06090_CDS 13 174 8 175 PF02458.15 Transferase Family 274 433 434 55.0 5.5e-15 1 CL0149
Cotton_A_04136_CDS 4 35 3 35 PF14369.6 zinc_ribbon_9 Domain 2 35 35 46.3 3.7e-12 1 CL0167
Cotton_A_04136_CDS 234 276 233 276 PF13639.6 zf-RING_2 Domain 2 44 44 47.9 1.2e-12 1 CL0229
Cotton_A_39615_CDS 78 198 77 199 PF02657.15 SufE Family 2 121 122 96.3 1.1e-27 1 CL0233
Cotton_A_16446_CDS 147 201 144 207 PF00170.21 bZIP_1 Family 4 58 64 48.4 7.5e-13 1 CL0018
Cotton_A_26955_CDS 7 240 7 240 PF03029.17 ATP_bind_1 Domain 1 241 241 262.6 3.7e-78 1 CL0023
Cotton_A_22234_CDS 53 323 53 324 PF01650.18 Peptidase_C13 Family 1 255 256 381.1 2.5e-114 1 CL0093
Cotton_A_24088_CDS 46 85 43 100 PF08561.10 Ribosomal_L37 Family 4 43 120 38.0 2e-09 1 No_clan
Cotton_A_00785_CDS 215 546 215 546 PF00225.23 Kinesin Domain 1 333 333 368.2 3.1e-110 1 CL0023
Cotton_A_16148_CDS 30 258 30 259 PF00230.20 MIP Family 1 226 227 265.5 4e-79 1 No_clan
Cotton_A_04275_CDS 6 164 4 165 PF04573.12 SPC22 Family 3 170 171 177.6 1.4e-52 1 No_clan
Cotton_A_14523_CDS 99 219 98 219 PF00903.25 Glyoxalase Domain 2 128 128 82.8 2.3e-23 1 CL0104
Cotton_A_14523_CDS 231 346 229 349 PF00903.25 Glyoxalase Domain 4 125 128 56.3 3.5e-15 1 CL0104
Cotton_A_25489_CDS 79 183 79 183 PF00416.22 Ribosomal_S13 Family 1 128 128 111.0 5.1e-32 1 CL0303
Cotton_A_14849_CDS 272 586 267 587 PF04484.12 QWRF Family 2 299 300 353.1 1.6e-105 1 No_clan
Cotton_A_08694_CDS 2 222 1 224 PF00069.25 Pkinase Domain 59 260 264 140.1 8.5e-41 1 CL0016
Cotton_A_23562_CDS 73 434 72 435 PF01566.18 Nramp Family 2 357 358 401.0 4.2e-120 1 CL0062
Cotton_A_08154_CDS 69 422 68 424 PF00657.22 Lipase_GDSL Family 2 198 200 53.4 3.3e-14 1 CL0264
Cotton_A_08922_CDS 49 191 42 195 PF00190.22 Cupin_1 Domain 9 147 151 23.1 4.4e-05 1 CL0029
Cotton_A_22955_CDS 32 155 31 155 PF01417.20 ENTH Domain 2 125 125 99.2 1.6e-28 1 CL0009
Cotton_A_03791_CDS 352 399 350 399 PF00010.26 HLH Domain 4 53 53 26.3 5.3e-06 1 No_clan
Cotton_A_01789_CDS 37 245 37 247 PF13460.6 NAD_binding_10 Domain 1 182 184 102.3 2.8e-29 1 CL0063
Cotton_A_11948_CDS 39 88 39 89 PF13833.6 EF-hand_8 Domain 3 54 55 48.6 5.4e-13 1 CL0220
Cotton_A_11948_CDS 96 159 96 160 PF13499.6 EF-hand_7 Domain 1 70 71 66.7 1.9e-18 1 CL0220
Cotton_A_12249_CDS 19 130 13 130 PF05757.11 PsbQ Family 88 199 200 86.3 2.2e-24 1 No_clan
Cotton_A_22680_CDS 22 267 22 267 PF00696.28 AA_kinase Family 1 241 241 128.1 3.9e-37 1 No_clan
Cotton_A_22680_CDS 302 565 288 571 PF00171.22 Aldedh Family 31 293 462 27.5 1e-06 1 CL0099
Cotton_A_00784_CDS 23 279 23 279 PF00069.25 Pkinase Domain 1 264 264 243.5 2.4e-72 1 CL0016
Cotton_A_33362_CDS 173 265 135 265 PF00583.25 Acetyltransf_1 Family 41 117 117 25.5 1.2e-05 1 CL0257
Cotton_A_16368_CDS 76 218 75 225 PF00182.19 Glyco_hydro_19 Domain 2 157 232 130.7 7.3e-38 1 CL0037
Cotton_A_16368_CDS 219 271 216 271 PF00182.19 Glyco_hydro_19 Domain 179 232 232 28.5 1.3e-06 1 CL0037
Cotton_A_06737_CDS 150 303 126 315 PF00566.18 RabGAP-TBC Family 39 192 215 117.2 7.7e-34 1 No_clan
Cotton_A_21085_CDS 21 108 21 115 PF12796.7 Ank_2 Repeat 1 74 83 30.9 3e-07 1 CL0465
Cotton_A_30547_CDS 19 55 19 57 PF02736.19 Myosin_N Domain 1 37 40 33.3 3.2e-08 1 CL0010
Cotton_A_30547_CDS 73 607 73 619 PF00063.21 Myosin_head Domain 1 537 677 727.8 1.1e-218 1 CL0023
Cotton_A_30547_CDS 617 685 614 685 PF00063.21 Myosin_head Domain 605 677 677 40.7 9.2e-11 1 CL0023
Cotton_A_30547_CDS 703 720 701 721 PF00612.27 IQ Motif 3 20 21 13.9 0.035 1 CL0220
Cotton_A_30547_CDS 750 769 749 769 PF00612.27 IQ Motif 2 21 21 13.3 0.052 1 CL0220
Cotton_A_30547_CDS 1311 1415 1311 1416 PF01843.19 DIL Family 1 103 104 87.3 7.1e-25 1 No_clan
Cotton_A_09824_CDS 295 337 295 338 PF06203.14 CCT Motif 1 43 44 65.5 3.2e-18 1 CL0281
Cotton_A_41202_CDS 154 224 154 225 PF07983.13 X8 Domain 1 75 76 77.8 7.3e-22 1 No_clan
Cotton_A_17353_CDS 15 66 14 69 PF09340.10 NuA4 Family 2 54 79 50.6 1.3e-13 1 No_clan
Cotton_A_18244_CDS 32 248 32 248 PF00314.17 Thaumatin Domain 1 214 214 279.0 2.4e-83 1 CL0293
Cotton_A_25314_CDS 145 247 140 256 PF00067.22 p450 Domain 27 135 463 46.6 2.1e-12 1 No_clan
Cotton_A_31245_CDS 37 87 37 88 PF00847.20 AP2 Domain 1 53 54 43.0 4e-11 1 CL0081
Cotton_A_06500_CDS 224 301 215 302 PF17125.5 Methyltr_RsmF_N Domain 16 89 90 42.3 8e-11 1 CL0063
Cotton_A_06500_CDS 305 515 305 515 PF01189.17 Methyltr_RsmB-F Family 1 200 200 248.0 5.9e-74 1 CL0063
Cotton_A_37352_CDS 138 371 126 376 PF01494.19 FAD_binding_3 Family 130 344 349 31.7 9e-08 1 CL0063
Cotton_A_32739_CDS 43 405 41 408 PF00155.21 Aminotran_1_2 Domain 3 360 363 165.5 2e-48 1 CL0061
Cotton_A_36390_CDS 91 111 90 112 PF00560.33 LRR_1 Repeat 2 22 23 11.2 0.45 1 CL0022
Cotton_A_36390_CDS 140 198 139 198 PF13855.6 LRR_8 Repeat 3 61 61 28.1 1.2e-06 1 CL0022
Cotton_A_13359_CDS 56 435 6 441 PF00201.18 UDPGT Family 40 419 499 83.0 2e-23 1 CL0113
Cotton_A_24596_CDS 85 109 84 110 PF13912.6 zf-C2H2_6 Domain 2 26 27 51.8 5.4e-14 1 CL0361
Cotton_A_24596_CDS 134 157 133 159 PF13912.6 zf-C2H2_6 Domain 2 25 27 47.3 1.3e-12 1 CL0361
Cotton_A_34345_CDS 41 128 37 129 PF08066.12 PMC2NT Domain 6 91 92 32.8 8.3e-08 1 No_clan
Cotton_A_34345_CDS 277 440 274 443 PF01612.20 DNA_pol_A_exo1 Domain 4 173 176 147.8 2.6e-43 1 CL0219
Cotton_A_34345_CDS 496 563 496 563 PF00570.23 HRDC Domain 1 68 68 50.8 1.2e-13 1 CL0426
Cotton_A_29542_CDS 82 134 76 140 PF13892.6 DBINO Domain 76 128 134 22.3 0.00014 1 CL0023
Cotton_A_29542_CDS 201 461 183 462 PF00176.23 SNF2_N Family 50 349 350 218.1 1.3e-64 1 CL0023
Cotton_A_29542_CDS 484 596 482 596 PF00271.31 Helicase_C Family 3 111 111 70.6 1.3e-19 1 CL0023
Cotton_A_29542_CDS 745 828 742 832 PF09110.11 HAND Domain 4 85 111 31.0 3.3e-07 1 No_clan
Cotton_A_29542_CDS 889 999 889 1000 PF09111.10 SLIDE Domain 1 113 114 150.5 1.7e-44 1 CL0123
Cotton_A_31212_CDS 136 424 105 424 PF00225.23 Kinesin Domain 55 333 333 332.2 2.8e-99 1 CL0023
Cotton_A_32570_CDS 17 116 1 116 PF14215.6 bHLH-MYC_N Family 76 175 175 120.1 1.2e-34 1 CL0161
Cotton_A_32570_CDS 230 276 228 276 PF00010.26 HLH Domain 4 53 53 41.4 9.9e-11 1 No_clan
Cotton_A_29446_CDS 26 733 23 738 PF00012.20 HSP70 Family 4 594 599 342.4 4e-102 1 CL0108
Cotton_A_15280_CDS 12 180 9 191 PF05971.12 Methyltransf_10 Family 4 168 299 172.3 1.5e-50 1 CL0063
Cotton_A_15280_CDS 218 332 210 333 PF05971.12 Methyltransf_10 Family 167 298 299 96.8 1.4e-27 1 CL0063
Cotton_A_05582_CDS 66 306 52 313 PF00481.21 PP2C Family 17 249 258 148.4 2.9e-43 1 CL0238
Cotton_A_18675_CDS 13 109 12 111 PF00034.21 Cytochrom_C Domain 2 90 92 50.0 5.2e-13 1 CL0318
Cotton_A_29062_CDS 46 380 26 380 PF00155.21 Aminotran_1_2 Domain 50 363 363 306.2 3.2e-91 1 CL0061
Cotton_A_21605_CDS 35 103 35 103 PF03456.18 uDENN Domain 1 66 66 42.1 1.1e-10 1 No_clan
Cotton_A_21605_CDS 124 304 122 306 PF02141.21 DENN Family 3 184 186 159.5 8.3e-47 1 CL0330
Cotton_A_21605_CDS 878 927 877 927 PF00400.32 WD40 Repeat 2 38 38 23.0 0.0001 1 CL0186
Cotton_A_21605_CDS 937 969 933 969 PF00400.32 WD40 Repeat 5 38 38 13.0 0.15 1 CL0186
Cotton_A_21605_CDS 974 1010 973 1010 PF00400.32 WD40 Repeat 2 38 38 20.1 0.00083 1 CL0186
Cotton_A_21605_CDS 1057 1091 1056 1092 PF00400.32 WD40 Repeat 2 37 38 14.6 0.045 1 CL0186
Cotton_A_21605_CDS 1097 1133 1096 1134 PF00400.32 WD40 Repeat 2 37 38 12.7 0.18 1 CL0186
Cotton_A_07846_CDS 66 313 64 313 PF00141.23 peroxidase Domain 3 229 229 243.2 2.6e-72 1 CL0617
Cotton_A_30109_CDS 64 200 62 207 PF00582.26 Usp Domain 4 136 141 76.6 2.6e-21 1 CL0039
Cotton_A_13523_CDS 280 440 272 453 PF00201.18 UDPGT Family 261 409 499 79.3 2.6e-22 1 CL0113
Cotton_A_23046_CDS 65 111 65 111 PF03107.16 C1_2 Domain 1 47 47 26.9 4.4e-06 1 CL0006
Cotton_A_23046_CDS 140 186 139 186 PF03107.16 C1_2 Domain 2 47 47 34.5 1.9e-08 1 CL0006
Cotton_A_23046_CDS 196 244 196 244 PF03107.16 C1_2 Domain 1 47 47 37.1 3e-09 1 CL0006
Cotton_A_23046_CDS 313 362 312 362 PF03107.16 C1_2 Domain 2 47 47 33.5 3.9e-08 1 CL0006
Cotton_A_30445_CDS 87 260 87 260 PF14543.6 TAXi_N Domain 1 178 178 193.4 3.7e-57 1 CL0129
Cotton_A_30445_CDS 283 423 282 424 PF14541.6 TAXi_C Domain 2 160 161 85.3 3.7e-24 1 CL0129
Cotton_A_06703_CDS 55 98 54 98 PF13639.6 zf-RING_2 Domain 2 44 44 47.9 1.2e-12 1 CL0229
Cotton_A_12747_CDS 39 448 38 448 PF00450.22 Peptidase_S10 Domain 2 419 419 397.2 1.2e-118 1 CL0028
Cotton_A_28707_CDS 98 188 97 189 PF00574.23 CLP_protease Domain 91 181 182 118.0 4.4e-34 1 CL0127
Cotton_A_18981_CDS 8 99 8 120 PF18052.1 Rx_N Domain 1 87 93 72.8 2.1e-20 1 No_clan
Cotton_A_18981_CDS 174 393 172 425 PF00931.22 NB-ARC Domain 3 222 252 183.9 2.9e-54 1 CL0023
Cotton_A_11686_CDS 7 56 2 60 PF00403.26 HMA Domain 6 54 62 38.5 1.1e-09 1 No_clan
Cotton_A_05536_CDS 32 63 31 64 PF00808.23 CBFD_NFYB_HMF Domain 2 32 65 37.5 2.1e-09 1 CL0012
Cotton_A_34924_CDS 1 81 1 81 PF09177.11 Syntaxin-6_N Domain 14 99 99 58.0 1.1e-15 1 No_clan
Cotton_A_34924_CDS 174 223 173 225 PF05739.19 SNARE Family 2 51 53 37.7 1.5e-09 1 No_clan
Cotton_A_28443_CDS 36 127 6 152 PF04577.14 DUF563 Family 96 183 209 57.1 2.7e-15 1 No_clan
Cotton_A_34681_CDS 58 176 57 176 PF00861.22 Ribosomal_L18p Family 2 116 116 154.3 1.5e-45 1 CL0267
Cotton_A_24311_CDS 146 280 144 285 PF06963.12 FPN1 Family 3 139 435 118.3 3e-34 1 CL0015
Cotton_A_24311_CDS 301 590 281 590 PF06963.12 FPN1 Family 139 435 435 261.5 1.1e-77 1 CL0015
Cotton_A_18505_CDS 33 177 31 178 PF04043.15 PMEI Domain 4 153 154 58.9 7.2e-16 1 No_clan
Cotton_A_18505_CDS 242 541 241 541 PF01095.19 Pectinesterase Family 2 298 298 385.5 1.1e-115 1 CL0268
Cotton_A_28652_CDS 92 370 90 370 PF07714.17 Pkinase_Tyr Domain 4 259 259 167.4 3.5e-49 1 CL0016
Cotton_A_33530_CDS 4 500 1 501 PF04791.16 LMBR1 Family 5 509 510 299.2 6.4e-89 1 No_clan
Cotton_A_33155_CDS 69 119 68 120 PF00847.20 AP2 Domain 2 53 54 52.3 5e-14 1 CL0081
Cotton_A_08183_CDS 55 141 54 141 PF17146.4 PIN_6 Domain 2 89 89 88.0 4.3e-25 1 CL0280
Cotton_A_08183_CDS 475 545 475 545 PF08772.11 NOB1_Zn_bind Domain 1 72 72 79.7 1.4e-22 1 CL0167
Cotton_A_15053_CDS 36 155 36 155 PF05922.16 Inhibitor_I9 Domain 1 82 82 73.9 1.2e-20 1 CL0570
Cotton_A_15053_CDS 180 666 180 695 PF00082.22 Peptidase_S8 Domain 1 287 298 147.1 6.6e-43 1 No_clan
Cotton_A_15053_CDS 749 842 749 842 PF17766.1 fn3_6 Domain 1 99 99 56.1 3.2e-15 1 CL0159
Cotton_A_33631_CDS 125 335 97 335 PF00481.21 PP2C Family 34 258 258 228.5 1e-67 1 CL0238
Cotton_A_00844_CDS 24 282 24 282 PF00069.25 Pkinase Domain 1 264 264 242.7 4.1e-72 1 CL0016
Cotton_A_00844_CDS 330 390 328 391 PF13499.6 EF-hand_7 Domain 4 70 71 34.9 1.6e-08 1 CL0220
Cotton_A_00844_CDS 400 461 399 461 PF13499.6 EF-hand_7 Domain 2 71 71 45.0 1.1e-11 1 CL0220
Cotton_A_00394_CDS 32 142 31 155 PF00232.18 Glyco_hydro_1 Domain 2 112 453 166.9 5e-49 1 CL0058
Cotton_A_38988_CDS 54 277 32 286 PF00481.21 PP2C Family 28 250 258 100.5 1.2e-28 1 CL0238
Cotton_A_25020_CDS 2 61 1 62 PF05129.13 Elf1 Domain 16 77 78 71.6 4.1e-20 1 CL0167
Cotton_A_12456_CDS 285 581 285 583 PF01501.20 Glyco_transf_8 Family 1 254 256 148.3 2.9e-43 1 CL0110
Cotton_A_34251_CDS 7 125 5 125 PF00238.19 Ribosomal_L14 Domain 4 122 122 124.2 3e-36 1 No_clan
Cotton_A_32901_CDS 204 249 204 252 PF00249.31 Myb_DNA-binding Domain 1 43 46 33.1 4.6e-08 1 CL0123
Cotton_A_02078_CDS 124 279 124 279 PF15346.6 ARGLU Family 1 151 151 135.7 1.1e-39 1 No_clan
Cotton_A_02805_CDS 83 145 83 145 PF00226.31 DnaJ Domain 1 63 63 92.9 9.8e-27 1 CL0392
Cotton_A_02805_CDS 207 408 207 408 PF01556.18 DnaJ_C Domain 1 148 148 104.9 4e-30 1 No_clan
Cotton_A_02805_CDS 234 290 234 290 PF00684.19 DnaJ_CXXCXGXG Domain 1 67 67 36.3 5.3e-09 1 No_clan
Cotton_A_30937_CDS 50 394 50 394 PF00274.19 Glycolytic Domain 1 349 349 524.0 1.3e-157 1 CL0035
Cotton_A_09933_CDS 157 270 156 272 PF03479.15 DUF296 Domain 2 105 107 98.3 3.1e-28 1 CL0615
Cotton_A_35550_CDS 2 143 1 147 PF02458.15 Transferase Family 32 193 434 84.8 5e-24 1 CL0149
Cotton_A_00599_CDS 1 229 1 229 PF00182.19 Glyco_hydro_19 Domain 6 232 232 348.3 2.4e-104 1 CL0037
Cotton_A_25618_CDS 43 135 37 135 PF05623.12 DUF789 Family 193 294 294 93.9 1.4e-26 1 No_clan
Cotton_A_14216_CDS 44 296 1 305 PF01513.21 NAD_kinase Family 63 281 292 56.6 2.3e-15 1 CL0240
Cotton_A_07333_CDS 116 359 115 364 PF02361.16 CbiQ Family 2 212 218 83.5 1.6e-23 1 No_clan
Cotton_A_09208_CDS 31 111 27 117 PF00011.21 HSP20 Family 5 93 102 22.6 8.8e-05 1 CL0190
Cotton_A_06355_CDS 68 118 68 119 PF00847.20 AP2 Domain 1 53 54 47.7 1.3e-12 1 CL0081
Cotton_A_29249_CDS 51 122 50 122 PF15044.6 CLU_N Family 2 79 79 36.9 3.4e-09 1 No_clan
Cotton_A_29249_CDS 702 844 701 845 PF12807.7 eIF3_p135 Family 2 175 176 79.7 2.5e-22 1 No_clan
Cotton_A_29249_CDS 914 984 913 985 PF13424.6 TPR_12 Repeat 2 72 77 58.9 4.5e-16 1 CL0020
Cotton_A_29249_CDS 998 1072 997 1073 PF13424.6 TPR_12 Repeat 2 76 77 40.6 2.4e-10 1 CL0020
Cotton_A_37313_CDS 106 177 105 178 PF00364.22 Biotin_lipoyl Domain 2 72 73 54.4 7.9e-15 1 CL0105
Cotton_A_37313_CDS 238 272 237 272 PF02817.17 E3_binding Family 2 36 36 50.2 2.4e-13 1 No_clan
Cotton_A_37313_CDS 317 537 314 538 PF00198.23 2-oxoacid_dh Domain 4 232 233 219.9 3e-65 1 CL0149
Cotton_A_31293_CDS 3 694 3 695 PF00012.20 HSP70 Family 1 598 599 546.5 6.1e-164 1 CL0108
Cotton_A_17216_CDS 32 83 30 92 PF00013.29 KH_1 Domain 3 55 66 49.4 3e-13 1 CL0007
Cotton_A_17216_CDS 139 203 137 205 PF00013.29 KH_1 Domain 3 64 66 42.8 3.3e-11 1 CL0007
Cotton_A_17216_CDS 346 396 344 409 PF00013.29 KH_1 Domain 3 54 66 41.1 1.1e-10 1 CL0007
Cotton_A_17216_CDS 436 503 436 505 PF00013.29 KH_1 Domain 1 64 66 46.9 1.8e-12 1 CL0007
Cotton_A_17216_CDS 626 689 626 690 PF00013.29 KH_1 Domain 1 65 66 43.5 2.1e-11 1 CL0007
Cotton_A_30958_CDS 191 240 191 240 PF07797.14 DUF1639 Family 1 50 50 76.7 9.9e-22 1 No_clan
Cotton_A_18905_CDS 519 545 518 549 PF05553.11 DUF761 Family 2 28 36 30.0 2.6e-07 1 No_clan
Cotton_A_35250_CDS 210 346 210 347 PF07534.16 TLD Domain 1 138 139 106.6 1.1e-30 1 No_clan
Cotton_A_26218_CDS 31 75 30 77 PF00956.18 NAP Family 3 47 270 30.5 2e-07 1 No_clan
Cotton_A_26218_CDS 76 222 75 223 PF00956.18 NAP Family 87 269 270 102.8 1.8e-29 1 No_clan
Cotton_A_03975_CDS 86 171 86 171 PF00439.25 Bromodomain Domain 1 84 84 71.8 3.7e-20 1 No_clan
Cotton_A_31636_CDS 34 211 33 223 PF01145.25 Band_7 Family 2 168 178 91.0 8.7e-26 1 CL0433
Cotton_A_21541_CDS 128 185 115 237 PF03007.16 WES_acyltransf Domain 106 167 264 26.5 5e-06 1 CL0149
Cotton_A_21541_CDS 328 473 328 473 PF06974.13 DUF1298 Family 1 145 145 139.2 8.9e-41 1 No_clan
Cotton_A_23291_CDS 2 187 2 187 PF17135.4 Ribosomal_L18 Family 1 187 187 315.9 6.3e-95 1 CL0588
Cotton_A_00506_CDS 325 393 312 400 PF07714.17 Pkinase_Tyr Domain 26 95 259 38.5 7.6e-10 1 CL0016
Cotton_A_24244_CDS 2 142 1 144 PF00295.17 Glyco_hydro_28 Domain 105 243 325 173.4 6e-51 1 CL0268
Cotton_A_38457_CDS 67 120 66 121 PF00046.29 Homeodomain Domain 3 56 57 56.1 2.3e-15 1 CL0123
Cotton_A_38457_CDS 122 162 122 164 PF02183.18 HALZ Coiled-coil 1 41 43 62.6 2.9e-17 1 No_clan
Cotton_A_15992_CDS 81 264 81 265 PF14543.6 TAXi_N Domain 1 177 178 139.1 1.7e-40 1 CL0129
Cotton_A_15992_CDS 283 389 282 393 PF14541.6 TAXi_C Domain 2 117 161 46.1 4.4e-12 1 CL0129
Cotton_A_33166_CDS 28 133 27 133 PF13947.6 GUB_WAK_bind Domain 2 106 106 90.5 1e-25 1 No_clan
Cotton_A_33166_CDS 162 272 161 274 PF08488.11 WAK Family 2 101 103 22.7 0.00011 1 No_clan
Cotton_A_33166_CDS 419 685 419 689 PF00069.25 Pkinase Domain 1 258 264 167.6 3.3e-49 1 CL0016
Cotton_A_15461_CDS 54 215 53 215 PF05078.12 DUF679 Family 2 163 163 202.5 3.9e-60 1 No_clan
Cotton_A_21238_CDS 28 189 28 189 PF10436.9 BCDHK_Adom3 Family 1 162 162 182.6 4.7e-54 1 No_clan
Cotton_A_21238_CDS 233 359 231 361 PF02518.26 HATPase_c Domain 3 109 112 51.2 1.5e-13 1 CL0025
Cotton_A_19064_CDS 120 163 119 163 PF13639.6 zf-RING_2 Domain 2 44 44 51.4 1e-13 1 CL0229
Cotton_A_28211_CDS 59 190 59 191 PF03188.16 Cytochrom_B561 Family 1 136 137 135.7 1.1e-39 1 CL0328
Cotton_A_17773_CDS 254 424 226 434 PF00201.18 UDPGT Family 267 409 499 90.4 1.2e-25 1 CL0113
Cotton_A_17129_CDS 2 44 1 45 PF03764.18 EFG_IV Domain 78 120 121 41.6 9.1e-11 1 CL0329
Cotton_A_37571_CDS 224 361 220 426 PF00753.27 Lactamase_B Domain 6 162 197 35.2 1.2e-08 1 CL0381
Cotton_A_37571_CDS 424 460 424 474 PF17778.1 BLACT_WH Domain 1 37 47 27.5 2.3e-06 1 CL0123
Cotton_A_16513_CDS 217 265 213 266 PF04570.14 zf-FLZ Domain 5 53 54 76.1 1e-21 1 CL0175
Cotton_A_09366_CDS 174 208 174 209 PF00320.27 GATA Domain 1 35 36 61.0 6e-17 1 CL0167
Cotton_A_31591_CDS 80 223 79 232 PF00106.25 adh_short Domain 2 140 195 83.8 1e-23 1 CL0063
Cotton_A_15001_CDS 1 233 1 235 PF03159.18 XRN_N Family 1 220 242 283.1 1.7e-84 1 CL0280
Cotton_A_15001_CDS 243 257 242 258 PF00098.23 zf-CCHC Domain 2 16 18 21.5 0.00017 1 CL0511
Cotton_A_15001_CDS 306 371 305 380 PF17846.1 XRN_M Domain 2 67 443 108.4 4.2e-31 1 No_clan
Cotton_A_08652_CDS 107 410 107 410 PF00069.25 Pkinase Domain 1 264 264 214.8 1.4e-63 1 CL0016
Cotton_A_08652_CDS 429 473 429 473 PF00433.24 Pkinase_C Family 1 46 46 26.8 6.3e-06 1 No_clan
Cotton_A_06535_CDS 187 333 186 333 PF03031.18 NIF Family 2 156 156 135.0 1.9e-39 1 CL0137
Cotton_A_15127_CDS 150 178 146 182 PF08711.11 Med26 Domain 21 49 53 25.9 7.4e-06 1 No_clan
Cotton_A_22377_CDS 139 182 138 182 PF13639.6 zf-RING_2 Domain 2 44 44 51.1 1.2e-13 1 CL0229
Cotton_A_10541_CDS 7 130 5 130 PF00410.19 Ribosomal_S8 Domain 3 127 127 78.1 5.3e-22 1 No_clan
Cotton_A_03864_CDS 124 438 124 439 PF00459.25 Inositol_P Family 1 271 272 172.1 1.7e-50 1 CL0171
Cotton_A_28016_CDS 13 50 13 50 PF01753.18 zf-MYND Domain 1 38 38 38.8 7.4e-10 1 CL0175
Cotton_A_28016_CDS 105 408 105 408 PF00443.29 UCH Family 1 257 257 154.2 4.3e-45 1 CL0125
Cotton_A_09707_CDS 98 145 97 147 PF02861.20 Clp_N Family 2 51 53 24.8 1.8e-05 1 No_clan
Cotton_A_09707_CDS 181 227 181 232 PF02861.20 Clp_N Family 1 47 53 36.3 4.4e-09 1 No_clan
Cotton_A_09707_CDS 316 450 315 455 PF00004.29 AAA Domain 2 124 132 36.0 8.2e-09 1 CL0023
Cotton_A_09707_CDS 459 553 459 564 PF17871.1 AAA_lid_9 Domain 1 93 104 94.3 3.7e-27 1 CL0671
Cotton_A_09707_CDS 658 833 658 833 PF07724.14 AAA_2 Domain 1 171 171 173.8 3.2e-51 1 CL0023
Cotton_A_09707_CDS 839 917 839 919 PF10431.9 ClpB_D2-small Domain 1 79 81 82.9 1.3e-23 1 CL0671
Cotton_A_11863_CDS 17 67 17 68 PF00847.20 AP2 Domain 1 53 54 35.2 1.1e-08 1 CL0081
Cotton_A_23128_CDS 7 133 7 133 PF02365.15 NAM Family 1 126 126 130.2 8.1e-38 1 No_clan
Cotton_A_20982_CDS 22 219 20 219 PF04450.12 BSP Family 3 207 207 222.5 4.9e-66 1 CL0126
Cotton_A_08743_CDS 171 359 170 362 PF00337.22 Gal-bind_lectin Domain 3 131 134 120.1 4.6e-35 1 CL0004
Cotton_A_08743_CDS 404 587 404 593 PF01762.21 Galactosyl_T Family 1 188 195 137.6 4.4e-40 1 CL0110
Cotton_A_10269_CDS 396 533 395 533 PF04146.15 YTH Domain 2 166 166 141.5 2.3e-41 1 CL0178
Cotton_A_14559_CDS 26 184 24 184 PF00582.26 Usp Domain 3 141 141 90.0 2e-25 1 CL0039
Cotton_A_35323_CDS 6 28 6 28 PF10584.9 Proteasome_A_N Domain 1 23 23 52.5 2.7e-14 1 CL0052
Cotton_A_35323_CDS 29 214 29 214 PF00227.26 Proteasome Domain 1 190 190 199.2 4.3e-59 1 CL0052
Cotton_A_27238_CDS 4 299 4 299 PF00069.25 Pkinase Domain 1 264 264 229.7 3.8e-68 1 CL0016
Cotton_A_35071_CDS 62 272 33 272 PF00481.21 PP2C Family 34 258 258 229.1 6.7e-68 1 CL0238
Cotton_A_17531_CDS 81 131 80 131 PF00249.31 Myb_DNA-binding Domain 2 46 46 30.6 2.9e-07 1 CL0123
Cotton_A_35620_CDS 55 381 54 381 PF00933.21 Glyco_hydro_3 Domain 2 319 319 239.4 6.1e-71 1 CL0058
Cotton_A_35620_CDS 418 627 418 628 PF01915.22 Glyco_hydro_3_C Domain 1 203 204 133.1 1.2e-38 1 No_clan
Cotton_A_12791_CDS 14 123 13 127 PF13499.6 EF-hand_7 Domain 2 67 71 36.0 7.3e-09 1 CL0220
Cotton_A_12791_CDS 147 164 146 164 PF13202.6 EF-hand_5 Domain 8 25 25 19.3 0.00055 1 CL0220
Cotton_A_29833_CDS 40 304 40 304 PF16499.5 Melibiase_2 Family 1 284 284 276.0 3.1e-82 1 CL0058
Cotton_A_29833_CDS 316 393 316 393 PF17801.1 Melibiase_C Domain 1 71 71 66.3 1.9e-18 1 CL0369
Cotton_A_34262_CDS 4 163 1 163 PF01397.21 Terpene_synth Domain 25 192 192 182.1 8.7e-54 1 No_clan
Cotton_A_34262_CDS 194 459 194 459 PF03936.16 Terpene_synth_C Domain 1 267 267 353.1 9e-106 1 CL0613
Cotton_A_27971_CDS 33 173 32 173 PF04535.12 DUF588 Domain 2 150 150 133.6 4.4e-39 1 CL0396
Cotton_A_39857_CDS 116 431 116 432 PF10250.9 O-FucT Family 1 335 336 233.9 3.9e-69 1 CL0113
Cotton_A_29534_CDS 124 465 123 465 PF00069.25 Pkinase Domain 2 264 264 161.6 2.3e-47 1 CL0016
Cotton_A_27750_CDS 91 601 87 602 PF03055.15 RPE65 Family 6 462 463 323.6 2.6e-96 1 No_clan
Cotton_A_22084_CDS 45 97 44 104 PF00013.29 KH_1 Domain 2 55 66 42.6 4e-11 1 CL0007
Cotton_A_22084_CDS 140 207 140 208 PF00013.29 KH_1 Domain 1 65 66 58.5 4.4e-16 1 CL0007
Cotton_A_22084_CDS 319 386 319 388 PF00013.29 KH_1 Domain 1 64 66 46.6 2.3e-12 1 CL0007
Cotton_A_20359_CDS 4 179 1 179 PF04898.14 Glu_syn_central Domain 117 279 279 207.3 3.1e-61 1 CL0036
Cotton_A_20359_CDS 322 596 313 596 PF01645.17 Glu_synthase Domain 99 368 368 405.4 2.2e-121 1 CL0036
Cotton_A_20359_CDS 679 830 678 833 PF01493.19 GXGXG Family 2 154 190 225.4 4.3e-67 1 No_clan
Cotton_A_20359_CDS 975 1086 974 1087 PF14691.6 Fer4_20 Domain 2 112 113 75.9 1.9e-21 1 CL0344
Cotton_A_20359_CDS 1100 1269 1099 1282 PF07992.14 Pyr_redox_2 Domain 2 169 294 57.0 1.8e-15 1 CL0063
Cotton_A_39364_CDS 142 273 136 277 PF00501.28 AMP-binding Family 49 184 423 65.8 2.6e-18 1 CL0378
Cotton_A_37054_CDS 98 160 98 164 PF00076.22 RRM_1 Domain 1 62 70 57.6 8e-16 1 CL0221
Cotton_A_37054_CDS 217 287 217 287 PF00076.22 RRM_1 Domain 1 70 70 69.6 1.4e-19 1 CL0221
Cotton_A_00476_CDS 86 357 84 359 PF00664.23 ABC_membrane Family 3 272 274 180.6 4.8e-53 1 CL0241
Cotton_A_00476_CDS 426 575 426 575 PF00005.27 ABC_tran Domain 1 137 137 125.7 1.8e-36 1 CL0023
Cotton_A_00476_CDS 744 1010 739 1012 PF00664.23 ABC_membrane Family 6 271 274 179.8 8.5e-53 1 CL0241
Cotton_A_00476_CDS 1082 1230 1081 1230 PF00005.27 ABC_tran Domain 2 137 137 120.0 9.8e-35 1 CL0023
Cotton_A_33765_CDS 61 149 58 156 PF01920.20 Prefoldin_2 Coiled-coil 16 104 106 71.2 5.9e-20 1 CL0200
Cotton_A_21511_CDS 25 69 25 109 PF04801.13 Sin_N Family 1 42 429 47.7 1.3e-12 1 CL0662
Cotton_A_07896_CDS 660 708 659 709 PF13920.6 zf-C3HC4_3 Domain 2 49 50 44.4 1.1e-11 1 CL0229
Cotton_A_15248_CDS 139 446 139 446 PF04765.13 DUF616 Family 1 314 314 429.8 6e-129 1 No_clan
Cotton_A_35197_CDS 2 167 1 178 PF03094.15 Mlo Family 306 466 479 224.1 2.4e-66 1 No_clan
Cotton_A_18683_CDS 43 79 40 80 PF08263.12 LRRNT_2 Family 8 40 41 22.4 0.00011 1 No_clan
Cotton_A_18683_CDS 257 316 255 316 PF13855.6 LRR_8 Repeat 3 61 61 39.0 5e-10 1 CL0022
Cotton_A_18683_CDS 401 460 393 460 PF13855.6 LRR_8 Repeat 2 61 61 27.6 1.8e-06 1 CL0022
Cotton_A_18683_CDS 715 734 715 737 PF00560.33 LRR_1 Repeat 1 20 23 9.5 1.7 1 CL0022
Cotton_A_18683_CDS 863 1129 861 1131 PF00069.25 Pkinase Domain 3 260 264 153.3 7.9e-45 1 CL0016
Cotton_A_07745_CDS 96 173 94 174 PF00498.26 FHA Family 3 68 69 44.7 1.3e-11 1 CL0357
Cotton_A_39223_CDS 222 341 218 348 PF07522.14 DRMBL Domain 6 103 110 31.2 2e-07 1 CL0398
Cotton_A_06727_CDS 18 81 16 82 PF00690.26 Cation_ATPase_N Domain 3 68 69 47.1 1.4e-12 1 No_clan
Cotton_A_06727_CDS 131 308 129 309 PF00122.20 E1-E2_ATPase Family 4 180 181 164.6 1.7e-48 1 No_clan
Cotton_A_06727_CDS 325 602 325 602 PF00702.26 Hydrolase Domain 1 210 210 70.4 2.5e-19 1 CL0137
Cotton_A_13073_CDS 40 181 39 188 PF00106.25 adh_short Domain 2 138 195 98.0 4.7e-28 1 CL0063
Cotton_A_05181_CDS 32 68 32 68 PF08071.12 RS4NT Domain 1 37 37 68.0 5.5e-19 1 No_clan
Cotton_A_05181_CDS 76 119 71 119 PF01479.25 S4 Domain 6 48 48 25.7 7e-06 1 CL0492
Cotton_A_05181_CDS 124 198 124 198 PF00900.20 Ribosomal_S4e Family 1 75 75 116.1 4.7e-34 1 CL0021
Cotton_A_05181_CDS 206 239 206 240 PF00467.29 KOW Family 1 31 32 28.4 1.1e-06 1 CL0107
Cotton_A_05181_CDS 241 287 241 288 PF16121.5 40S_S4_C Family 1 47 48 91.6 1.7e-26 1 No_clan
Cotton_A_37892_CDS 64 324 64 326 PF01501.20 Glyco_transf_8 Family 1 254 256 182.8 8.6e-54 1 CL0110
Cotton_A_33583_CDS 4 334 3 335 PF08569.11 Mo25 Family 2 326 327 412.3 1.6e-123 1 CL0020
Cotton_A_06579_CDS 139 286 139 287 PF03641.14 Lysine_decarbox Family 1 131 132 92.5 2.1e-26 1 CL0349
Cotton_A_17071_CDS 21 83 19 84 PF00690.26 Cation_ATPase_N Domain 4 68 69 46.4 2.3e-12 1 No_clan
Cotton_A_17071_CDS 133 310 131 311 PF00122.20 E1-E2_ATPase Family 4 180 181 163.1 4.7e-48 1 No_clan
Cotton_A_17071_CDS 327 604 327 604 PF00702.26 Hydrolase Domain 1 210 210 62.3 7.3e-17 1 CL0137
Cotton_A_16386_CDS 73 326 50 329 PF00481.21 PP2C Family 25 255 258 133.5 9.7e-39 1 CL0238
Cotton_A_31015_CDS 26 61 24 61 PF08263.12 LRRNT_2 Family 3 41 41 33.9 2.9e-08 1 No_clan
Cotton_A_31015_CDS 78 126 69 126 PF13855.6 LRR_8 Repeat 13 61 61 30.4 2.4e-07 1 CL0022
Cotton_A_31015_CDS 330 588 327 591 PF00069.25 Pkinase Domain 4 259 264 130.5 6.8e-38 1 CL0016
Cotton_A_33891_CDS 614 712 614 712 PF02042.15 RWP-RK Family 1 49 49 72.8 1.6e-20 1 No_clan
Cotton_A_33891_CDS 884 965 883 966 PF00564.24 PB1 Domain 2 83 84 61.8 4.4e-17 1 CL0072
Cotton_A_24522_CDS 3 75 2 75 PF02798.20 GST_N Domain 2 76 76 76.2 1.8e-21 1 CL0172
Cotton_A_24522_CDS 112 193 76 194 PF00043.25 GST_C Domain 18 92 93 26.2 7e-06 1 CL0497
Cotton_A_16632_CDS 75 183 64 183 PF04424.13 MINDY_DUB Family 19 117 117 108.4 2e-31 1 No_clan
Cotton_A_06770_CDS 95 386 95 387 PF07887.11 Calmodulin_bind Family 1 291 292 434.2 2.3e-130 1 No_clan
Cotton_A_19286_CDS 22 323 21 323 PF02574.16 S-methyl_trans Family 2 268 268 248.2 1.2e-73 1 No_clan
Cotton_A_29089_CDS 30 205 26 205 PF06697.12 DUF1191 Family 6 183 183 208.5 6.9e-62 1 CL0661
Cotton_A_12489_CDS 72 656 72 657 PF00012.20 HSP70 Family 1 598 599 841.0 4.1e-253 1 CL0108
Cotton_A_33603_CDS 39 84 38 86 PF03018.14 Dirigent Family 2 46 148 29.1 7.1e-07 1 CL0650
Cotton_A_23573_CDS 13 208 12 208 PF00227.26 Proteasome Domain 2 190 190 117.8 4e-34 1 CL0052
Cotton_A_37023_CDS 92 165 92 172 PF00300.22 His_Phos_1 Domain 1 71 194 62.7 3.6e-17 1 CL0071
Cotton_A_37023_CDS 189 294 179 309 PF00300.22 His_Phos_1 Domain 68 171 194 54.6 1.1e-14 1 CL0071
Cotton_A_06091_CDS 14 181 13 182 PF03357.21 Snf7 Family 2 172 173 98.5 3.2e-28 1 CL0235
Cotton_A_13252_CDS 34 210 5 222 PF00501.28 AMP-binding Family 149 347 423 113.7 8e-33 1 CL0378
Cotton_A_24188_CDS 18 139 17 139 PF00903.25 Glyoxalase Domain 2 128 128 40.7 2.4e-10 1 CL0104
Cotton_A_38130_CDS 228 285 228 285 PF04844.13 Ovate Family 1 58 58 84.4 3.8e-24 1 No_clan
Cotton_A_14951_CDS 61 386 61 395 PF07992.14 Pyr_redox_2 Domain 1 285 294 200.5 3.3e-59 1 CL0063
Cotton_A_23289_CDS 80 378 79 378 PF01095.19 Pectinesterase Family 2 298 298 468.1 7.3e-141 1 CL0268
Cotton_A_33637_CDS 19 86 19 87 PF00076.22 RRM_1 Domain 1 69 70 57.9 6.4e-16 1 CL0221
Cotton_A_33637_CDS 119 177 119 191 PF00076.22 RRM_1 Domain 1 58 70 59.3 2.3e-16 1 CL0221
Cotton_A_25900_CDS 6 255 3 255 PF07714.17 Pkinase_Tyr Domain 29 259 259 131.0 4.4e-38 1 CL0016
Cotton_A_21207_CDS 257 276 257 279 PF02493.20 MORN Repeat 1 20 23 19.6 0.0006 1 CL0251
Cotton_A_21207_CDS 280 302 280 302 PF02493.20 MORN Repeat 1 23 23 27.4 2e-06 1 CL0251
Cotton_A_21207_CDS 303 325 303 325 PF02493.20 MORN Repeat 1 23 23 26.1 5e-06 1 CL0251
Cotton_A_21207_CDS 326 348 326 348 PF02493.20 MORN Repeat 1 23 23 25.2 9.9e-06 1 CL0251
Cotton_A_21207_CDS 349 371 349 371 PF02493.20 MORN Repeat 1 23 23 25.4 8.2e-06 1 CL0251
Cotton_A_21207_CDS 372 393 372 394 PF02493.20 MORN Repeat 1 22 23 24.6 1.5e-05 1 CL0251
Cotton_A_21207_CDS 395 416 395 417 PF02493.20 MORN Repeat 1 22 23 23.0 4.7e-05 1 CL0251
Cotton_A_05812_CDS 73 170 71 183 PF01694.22 Rhomboid Family 3 89 150 53.1 3.3e-14 1 CL0207
Cotton_A_26027_CDS 8 98 8 110 PF02362.21 B3 Family 1 91 101 38.0 1.1e-09 1 CL0405
Cotton_A_17670_CDS 72 275 34 275 PF04720.12 PDDEXK_6 Family 31 221 221 232.0 7.5e-69 1 No_clan
Cotton_A_02995_CDS 254 305 254 305 PF00249.31 Myb_DNA-binding Domain 1 46 46 35.6 7.6e-09 1 CL0123
Cotton_A_02995_CDS 337 382 337 383 PF14379.6 Myb_CC_LHEQLE Family 1 46 48 84.2 3.7e-24 1 No_clan
Cotton_A_30178_CDS 284 426 234 453 PF00201.18 UDPGT Family 273 394 499 75.0 5.1e-21 1 CL0113
Cotton_A_32474_CDS 807 854 806 855 PF13920.6 zf-C3HC4_3 Domain 2 49 50 41.9 6.6e-11 1 CL0229
Cotton_A_24700_CDS 1 406 1 408 PF00067.22 p450 Domain 54 461 463 289.7 3.7e-86 1 No_clan
Cotton_A_35381_CDS 5 74 1 74 PF03936.16 Terpene_synth_C Domain 198 267 267 69.3 3.3e-19 1 CL0613
Cotton_A_35857_CDS 1 85 1 87 PF11543.8 UN_NPL4 Family 5 78 80 26.0 9.7e-06 1 CL0072
Cotton_A_35857_CDS 158 282 155 302 PF05021.15 NPL4 Family 4 151 308 44.5 1.2e-11 1 CL0366
Cotton_A_05716_CDS 10 227 9 253 PF00069.25 Pkinase Domain 2 212 264 91.0 7.8e-26 1 CL0016
Cotton_A_39619_CDS 44 141 3 148 PF00083.24 Sugar_tr Family 83 176 452 54.7 7.4e-15 1 CL0015
Cotton_A_39619_CDS 149 272 146 284 PF00083.24 Sugar_tr Family 215 343 452 72.6 2.8e-20 1 CL0015
Cotton_A_12397_CDS 48 111 46 116 PF07714.17 Pkinase_Tyr Domain 3 74 259 27.9 1.3e-06 1 CL0016
Cotton_A_12397_CDS 113 222 109 230 PF00069.25 Pkinase Domain 97 202 264 90.6 1e-25 1 CL0016
Cotton_A_15922_CDS 85 361 84 364 PF00664.23 ABC_membrane Family 2 271 274 150.4 7.7e-44 1 CL0241
Cotton_A_15922_CDS 432 576 429 577 PF00005.27 ABC_tran Domain 4 136 137 84.4 9.8e-24 1 CL0023
Cotton_A_15922_CDS 840 1102 835 1109 PF00664.23 ABC_membrane Family 7 267 274 138.2 4e-40 1 CL0241
Cotton_A_15922_CDS 1176 1324 1176 1325 PF00005.27 ABC_tran Domain 1 136 137 101.1 7e-29 1 CL0023
Cotton_A_19976_CDS 50 151 48 151 PF02225.22 PA Family 3 89 89 45.6 5.4e-12 1 CL0364
Cotton_A_21150_CDS 16 304 14 304 PF14953.6 DUF4504 Family 3 264 264 325.6 2.2e-97 1 No_clan
Cotton_A_25338_CDS 131 297 130 310 PF01758.16 SBF Family 2 182 195 126.6 9.5e-37 1 CL0064
Cotton_A_16813_CDS 16 142 16 142 PF02365.15 NAM Family 1 126 126 138.5 2.1e-40 1 No_clan
Cotton_A_04015_CDS 6 302 6 303 PF01095.19 Pectinesterase Family 1 297 298 418.2 1.2e-125 1 CL0268
Cotton_A_03954_CDS 198 268 193 276 PF01078.21 Mg_chelatase Domain 88 158 207 30.4 2.4e-07 1 CL0023
Cotton_A_03954_CDS 348 406 346 414 PF17863.1 AAA_lid_2 Domain 4 62 73 70.9 5.7e-20 1 CL0671
Cotton_A_15174_CDS 256 478 255 481 PF00566.18 RabGAP-TBC Family 2 212 215 173.8 3.9e-51 1 No_clan
Cotton_A_06078_CDS 50 173 26 174 PF04756.13 OST3_OST6 Family 172 291 293 42.3 5.7e-11 1 CL0172
Cotton_A_35542_CDS 8 141 8 142 PF00179.26 UQ_con Domain 1 139 140 163.0 3.1e-48 1 CL0208
Cotton_A_12162_CDS 17 154 14 154 PF04535.12 DUF588 Domain 4 150 150 113.9 5.5e-33 1 CL0396
Cotton_A_34542_CDS 95 505 94 507 PF01490.18 Aa_trans Family 2 407 409 183.9 3.9e-54 1 CL0062
Cotton_A_37468_CDS 36 369 35 369 PF03492.15 Methyltransf_7 Family 2 334 334 407.1 5.7e-122 1 CL0063
Cotton_A_15110_CDS 129 395 124 400 PF00069.25 Pkinase Domain 6 258 264 173.1 6.9e-51 1 CL0016
Cotton_A_18223_CDS 66 126 66 129 PF05347.15 Complex1_LYR Family 1 56 59 44.7 1e-11 1 CL0491
Cotton_A_03225_CDS 20 558 19 558 PF06101.11 Vps62 Family 2 542 542 847.5 3.5e-255 1 No_clan
Cotton_A_03356_CDS 69 178 67 179 PF00456.21 Transketolase_N Domain 4 112 334 171.0 3.2e-50 1 CL0254
Cotton_A_08591_CDS 392 576 390 576 PF11721.8 Malectin Domain 3 165 165 131.4 3.2e-38 1 CL0202
Cotton_A_08591_CDS 659 923 656 924 PF07714.17 Pkinase_Tyr Domain 4 258 259 151.6 2.4e-44 1 CL0016
Cotton_A_13323_CDS 88 264 88 265 PF00800.18 PDT Family 1 182 183 197.0 2.3e-58 1 CL0177
Cotton_A_22524_CDS 38 84 37 84 PF13639.6 zf-RING_2 Domain 2 44 44 32.6 7.3e-08 1 CL0229
Cotton_A_19958_CDS 38 256 28 258 PF03767.14 Acid_phosphat_B Family 13 228 230 210.4 2.6e-62 1 CL0137
Cotton_A_38405_CDS 72 214 72 215 PF00810.18 ER_lumen_recept Family 1 146 147 136.8 9.7e-40 1 CL0141
Cotton_A_08575_CDS 42 105 40 106 PF00690.26 Cation_ATPase_N Domain 3 68 69 47.2 1.3e-12 1 No_clan
Cotton_A_08575_CDS 154 332 152 333 PF00122.20 E1-E2_ATPase Family 3 180 181 165.0 1.2e-48 1 No_clan
Cotton_A_08575_CDS 349 644 349 644 PF00702.26 Hydrolase Domain 1 210 210 68.8 7.9e-19 1 CL0137
Cotton_A_19430_CDS 70 420 70 420 PF01959.16 DHQS Family 1 352 352 431.9 1.5e-129 1 No_clan
Cotton_A_10499_CDS 14 52 14 52 PF00249.31 Myb_DNA-binding Domain 1 46 46 32.2 8.8e-08 1 CL0123
Cotton_A_10499_CDS 59 101 58 103 PF00249.31 Myb_DNA-binding Domain 2 44 46 39.2 5.9e-10 1 CL0123
Cotton_A_06684_CDS 12 83 6 87 PF12165.8 Alfin Family 32 103 127 99.5 1.1e-28 1 No_clan
Cotton_A_33010_CDS 46 103 46 103 PF11250.8 FAF Family 1 54 54 65.6 3.3e-18 1 No_clan
Cotton_A_11663_CDS 76 204 66 207 PF17900.1 Peptidase_M1_N Domain 7 151 186 32.5 9.1e-08 1 CL0672
Cotton_A_11663_CDS 267 464 265 468 PF01433.20 Peptidase_M1 Domain 3 214 218 147.9 3.1e-43 1 CL0126
Cotton_A_11663_CDS 472 585 472 586 PF11940.8 DUF3458 Domain 1 94 95 95.5 1.9e-27 1 CL0159
Cotton_A_11663_CDS 603 886 585 886 PF17432.2 DUF3458_C Family 35 319 319 366.4 1.3e-109 1 CL0020
Cotton_A_23379_CDS 5 377 4 377 PF00022.19 Actin Family 2 407 407 489.1 7.8e-147 1 CL0108
Cotton_A_19224_CDS 50 293 48 293 PF00141.23 peroxidase Domain 3 229 229 243.9 1.6e-72 1 CL0617
Cotton_A_15508_CDS 31 69 30 69 PF08263.12 LRRNT_2 Family 2 41 41 41.0 1.7e-10 1 No_clan
Cotton_A_15508_CDS 186 208 186 208 PF00560.33 LRR_1 Repeat 1 23 23 10.9 0.61 1 CL0022
Cotton_A_15508_CDS 255 277 255 277 PF00560.33 LRR_1 Repeat 1 23 23 15.2 0.023 1 CL0022
Cotton_A_15508_CDS 590 605 590 607 PF13516.6 LRR_6 Repeat 2 17 24 10.1 0.7 1 CL0022
Cotton_A_15508_CDS 640 699 639 699 PF13855.6 LRR_8 Repeat 2 61 61 38.7 6e-10 1 CL0022
Cotton_A_15508_CDS 855 1053 852 1122 PF00069.25 Pkinase Domain 4 198 264 143.3 8.5e-42 1 CL0016
Cotton_A_23913_CDS 215 277 215 277 PF01485.21 IBR Domain 1 62 62 60.0 2e-16 1 CL0229
Cotton_A_23913_CDS 294 342 280 347 PF01485.21 IBR Domain 12 58 62 39.3 5.7e-10 1 CL0229
Cotton_A_10524_CDS 71 120 71 129 PF00929.24 RNase_T Family 1 49 165 40.4 4.3e-10 1 CL0219
Cotton_A_04149_CDS 10 246 10 250 PF12697.7 Abhydrolase_6 Domain 1 216 220 60.7 3.1e-16 1 CL0028
Cotton_A_24905_CDS 4 149 1 157 PF00501.28 AMP-binding Family 206 354 423 65.1 4.4e-18 1 CL0378
Cotton_A_33378_CDS 125 244 125 245 PF03109.16 ABC1 Family 1 118 119 104.0 5.2e-30 1 CL0016
Cotton_A_24383_CDS 43 112 43 114 PF00076.22 RRM_1 Domain 1 68 70 52.1 4.2e-14 1 CL0221
Cotton_A_31903_CDS 12 48 10 48 PF00400.32 WD40 Repeat 3 38 38 33.6 4.5e-08 1 CL0186
Cotton_A_31903_CDS 340 377 340 378 PF00400.32 WD40 Repeat 1 37 38 13.9 0.077 1 CL0186
Cotton_A_25926_CDS 3 111 1 113 PF01565.23 FAD_binding_4 Domain 29 136 139 66.4 2.1e-18 1 CL0077
Cotton_A_25926_CDS 366 423 366 423 PF08031.12 BBE Domain 1 46 46 76.9 8.9e-22 1 CL0277
Cotton_A_27364_CDS 55 244 55 245 PF00174.19 Oxidored_molyb Domain 1 171 172 172.2 7.5e-51 1 CL0072
Cotton_A_27364_CDS 269 396 267 398 PF03404.16 Mo-co_dimer Domain 3 136 138 127.7 3e-37 1 CL0159
Cotton_A_38480_CDS 64 170 63 170 PF05938.11 Self-incomp_S1 Family 2 104 104 82.0 3.7e-23 1 No_clan
Cotton_A_38757_CDS 4 40 4 46 PF01111.19 CKS Domain 1 37 68 51.9 6.6e-14 1 No_clan
Cotton_A_38757_CDS 41 84 41 86 PF00249.31 Myb_DNA-binding Domain 1 44 46 52.9 3e-14 1 CL0123
Cotton_A_12130_CDS 1 103 1 104 PF00685.27 Sulfotransfer_1 Domain 172 263 267 66.9 1.9e-18 1 CL0023
Cotton_A_34282_CDS 10 44 10 45 PF00320.27 GATA Domain 1 35 36 63.5 9.6e-18 1 CL0167
Cotton_A_00479_CDS 128 259 128 260 PF13301.6 DUF4079 Family 1 140 141 76.9 1.6e-21 1 No_clan
Cotton_A_17753_CDS 33 483 31 486 PF00232.18 Glyco_hydro_1 Domain 3 447 453 509.6 5.5e-153 1 CL0058
Cotton_A_26713_CDS 11 84 11 84 PF07765.12 KIP1 Family 1 74 74 125.3 7.2e-37 1 No_clan
Cotton_A_39902_CDS 108 182 108 182 PF16076.5 Acyltransf_C Family 1 74 74 74.5 5.4e-21 1 No_clan
Cotton_A_19910_CDS 54 335 42 357 PF00501.28 AMP-binding Family 16 312 423 186.7 5.2e-55 1 CL0378
Cotton_A_14558_CDS 66 188 59 191 PF00651.31 BTB Domain 8 107 111 44.6 1.4e-11 1 CL0033
Cotton_A_14558_CDS 229 273 229 273 PF11900.8 DUF3420 Repeat 1 47 47 40.4 2.4e-10 1 CL0465
Cotton_A_14558_CDS 300 343 298 352 PF13637.6 Ank_4 Repeat 4 47 55 23.2 7.5e-05 1 CL0465
Cotton_A_14558_CDS 372 575 372 576 PF12313.8 NPR1_like_C Family 1 204 205 312.2 1.3e-93 1 No_clan
Cotton_A_08665_CDS 32 102 32 102 PF00076.22 RRM_1 Domain 1 70 70 55.1 4.9e-15 1 CL0221
Cotton_A_34280_CDS 43 86 42 93 PF05605.12 zf-Di19 Domain 2 45 54 53.6 1.9e-14 1 CL0361
Cotton_A_34280_CDS 179 278 179 278 PF14571.6 Di19_C Family 1 102 102 110.6 4.4e-32 1 No_clan
Cotton_A_02408_CDS 543 673 543 674 PF00004.29 AAA Domain 1 131 132 131.1 3.2e-38 1 CL0023
Cotton_A_02408_CDS 695 732 695 744 PF17862.1 AAA_lid_3 Domain 1 38 45 41.4 8.8e-11 1 CL0671
Cotton_A_09372_CDS 108 152 106 153 PF00249.31 Myb_DNA-binding Domain 3 45 46 40.6 2.1e-10 1 CL0123
Cotton_A_16598_CDS 17 132 17 132 PF14749.6 Acyl-CoA_ox_N Domain 1 125 125 105.4 2.9e-30 1 CL0544
Cotton_A_16598_CDS 134 246 134 247 PF02770.19 Acyl-CoA_dh_M Domain 1 96 97 44.3 1.5e-11 1 No_clan
Cotton_A_16598_CDS 481 656 479 656 PF01756.19 ACOX Family 3 180 180 182.3 6e-54 1 CL0087
Cotton_A_27939_CDS 8 255 8 257 PF01370.21 Epimerase Family 1 239 241 93.2 1.7e-26 1 CL0063
Cotton_A_18998_CDS 3 39 1 62 PF00931.22 NB-ARC Domain 186 222 252 27.4 1.8e-06 1 CL0023
Cotton_A_09485_CDS 5 27 5 27 PF10584.9 Proteasome_A_N Domain 1 23 23 50.4 1.3e-13 1 CL0052
Cotton_A_09485_CDS 30 214 28 215 PF00227.26 Proteasome Domain 3 189 190 213.3 2.1e-63 1 CL0052
Cotton_A_05142_CDS 3 42 1 44 PF12861.7 zf-ANAPC11 Family 41 82 85 23.0 6.1e-05 1 CL0229
Cotton_A_05142_CDS 184 359 184 360 PF00092.28 VWA Domain 1 174 175 84.2 1.2e-23 1 CL0128
Cotton_A_05142_CDS 527 599 527 600 PF14624.6 Vwaint Domain 1 69 70 80.7 6.3e-23 1 No_clan
Cotton_A_38441_CDS 2 100 2 105 PF03195.14 LOB Family 1 94 99 72.1 4.4e-20 1 No_clan
Cotton_A_20636_CDS 106 136 100 136 PF00400.32 WD40 Repeat 9 38 38 17.5 0.0057 1 CL0186
Cotton_A_20636_CDS 141 179 140 179 PF00400.32 WD40 Repeat 2 38 38 21.8 0.00024 1 CL0186
Cotton_A_20636_CDS 322 343 304 343 PF00400.32 WD40 Repeat 17 38 38 15.3 0.027 1 CL0186
Cotton_A_20636_CDS 353 387 349 387 PF00400.32 WD40 Repeat 6 38 38 21.5 0.0003 1 CL0186
Cotton_A_20532_CDS 95 225 91 225 PF11815.8 DUF3336 Family 5 138 138 101.6 2.7e-29 1 No_clan
Cotton_A_20532_CDS 232 425 232 435 PF01734.22 Patatin Family 1 193 204 57.1 2.6e-15 1 CL0323
Cotton_A_12670_CDS 31 105 30 106 PF04564.15 U-box Domain 3 72 73 51.9 6.1e-14 1 CL0229
Cotton_A_25667_CDS 4 112 2 112 PF04043.15 PMEI Domain 36 154 154 34.3 2.7e-08 1 No_clan
Cotton_A_26617_CDS 53 104 52 108 PF00013.29 KH_1 Domain 2 54 66 45.4 5.3e-12 1 CL0007
Cotton_A_26617_CDS 144 178 143 184 PF00013.29 KH_1 Domain 2 36 66 25.9 6.4e-06 1 CL0007
Cotton_A_26617_CDS 204 267 203 267 PF00013.29 KH_1 Domain 2 66 66 48.1 7.8e-13 1 CL0007
Cotton_A_15702_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 54.5 9.8e-15 1 CL0123
Cotton_A_15702_CDS 67 111 67 112 PF00249.31 Myb_DNA-binding Domain 1 45 46 47.3 1.7e-12 1 CL0123
Cotton_A_02935_CDS 211 356 210 358 PF01764.25 Lipase_3 Family 2 140 142 104.6 3.8e-30 1 CL0028
Cotton_A_00222_CDS 22 180 17 180 PF03248.13 Rer1 Family 6 171 171 251.1 4.4e-75 1 No_clan
Cotton_A_39637_CDS 3 206 3 206 PF01088.21 Peptidase_C12 Domain 1 211 211 238.8 5.1e-71 1 CL0125
Cotton_A_39637_CDS 274 319 274 319 PF18031.1 UCH_C Domain 1 46 46 71.2 4.9e-20 1 CL0614
Cotton_A_21134_CDS 5 77 1 77 PF13839.6 PC-Esterase Family 202 275 283 74.5 1.2e-20 1 CL0264
Cotton_A_35759_CDS 268 361 263 362 PF01399.27 PCI Domain 6 104 105 65.7 4.5e-18 1 CL0123
Cotton_A_40025_CDS 41 312 38 313 PF00664.23 ABC_membrane Family 4 273 274 196.0 9.7e-58 1 CL0241
Cotton_A_40025_CDS 381 529 380 529 PF00005.27 ABC_tran Domain 2 137 137 112.7 1.9e-32 1 CL0023
Cotton_A_40025_CDS 685 956 684 958 PF00664.23 ABC_membrane Family 2 272 274 168.7 1.9e-49 1 CL0241
Cotton_A_40025_CDS 1026 1174 1025 1174 PF00005.27 ABC_tran Domain 2 137 137 112.4 2.3e-32 1 CL0023
Cotton_A_13303_CDS 37 311 35 312 PF01095.19 Pectinesterase Family 3 297 298 244.3 1.1e-72 1 CL0268
Cotton_A_27006_CDS 101 186 97 201 PF00085.20 Thioredoxin Domain 5 89 103 63.8 1.1e-17 1 CL0172
Cotton_A_18768_CDS 15 58 13 60 PF00249.31 Myb_DNA-binding Domain 3 42 46 27.3 3.1e-06 1 CL0123
Cotton_A_12653_CDS 46 279 45 282 PF16414.5 NPC1_N Domain 2 241 244 219.0 6.9e-65 1 CL0644
Cotton_A_12653_CDS 614 917 418 930 PF02460.18 Patched Family 193 508 811 161.7 2.2e-47 1 CL0322
Cotton_A_12653_CDS 1065 1282 1019 1284 PF02460.18 Patched Family 596 809 811 118.8 2.1e-34 1 CL0322
Cotton_A_05021_CDS 165 225 165 225 PF12906.7 RINGv Domain 1 48 48 29.3 6.7e-07 1 CL0229
Cotton_A_25920_CDS 79 215 79 217 PF01565.23 FAD_binding_4 Domain 1 136 139 84.4 5.9e-24 1 CL0077
Cotton_A_25920_CDS 468 523 468 523 PF08031.12 BBE Domain 1 46 46 75.0 3.6e-21 1 CL0277
Cotton_A_30781_CDS 1 221 1 222 PF00931.22 NB-ARC Domain 28 251 252 171.8 1.5e-50 1 CL0023
Cotton_A_00333_CDS 129 292 124 293 PF13439.6 Glyco_transf_4 Domain 6 169 170 81.9 5.1e-23 1 CL0113
Cotton_A_00333_CDS 314 451 314 451 PF13692.6 Glyco_trans_1_4 Domain 1 134 134 93.2 1.8e-26 1 CL0113
Cotton_A_14229_CDS 27 48 27 49 PF00560.33 LRR_1 Repeat 1 22 23 9.8 1.4 1 CL0022
Cotton_A_14229_CDS 99 121 99 121 PF00560.33 LRR_1 Repeat 1 23 23 11.6 0.34 1 CL0022
Cotton_A_27967_CDS 153 338 153 340 PF08245.12 Mur_ligase_M Domain 1 190 192 90.2 1.7e-25 1 No_clan
Cotton_A_34858_CDS 5 162 4 166 PF03446.15 NAD_binding_2 Domain 2 154 158 64.5 1.2e-17 1 CL0063
Cotton_A_34858_CDS 169 281 169 287 PF14833.6 NAD_binding_11 Domain 1 116 122 68.9 4.4e-19 1 CL0106
Cotton_A_34858_CDS 322 480 322 484 PF03446.15 NAD_binding_2 Domain 1 154 158 115.5 2.4e-33 1 CL0063
Cotton_A_34858_CDS 487 590 487 592 PF14833.6 NAD_binding_11 Domain 1 105 122 100.6 6.8e-29 1 CL0106
Cotton_A_37877_CDS 2 19 1 19 PF04570.14 zf-FLZ Domain 37 54 54 26.9 2.5e-06 1 CL0175
Cotton_A_05184_CDS 10 170 10 172 PF00071.22 Ras Domain 1 160 162 188.7 5.1e-56 1 CL0023
Cotton_A_28049_CDS 4 114 1 114 PF07714.17 Pkinase_Tyr Domain 145 259 259 23.5 2.9e-05 1 CL0016
Cotton_A_23393_CDS 88 117 87 117 PF17123.5 zf-RING_11 Domain 2 29 29 34.8 9.7e-09 1 CL0229
Cotton_A_23393_CDS 264 443 264 446 PF00092.28 VWA Domain 1 172 175 90.0 2e-25 1 CL0128
Cotton_A_23393_CDS 612 684 612 685 PF14624.6 Vwaint Domain 1 69 70 71.5 4.7e-20 1 No_clan
Cotton_A_25217_CDS 6 45 4 45 PF18511.1 F-box_5 Domain 3 42 42 81.3 2.6e-23 1 CL0271
Cotton_A_25217_CDS 65 110 64 110 PF18791.1 Transp_inhibit Family 2 47 47 83.2 6.5e-24 1 No_clan
Cotton_A_00666_CDS 17 100 4 102 PF02519.14 Auxin_inducible Family 9 88 90 96.8 6e-28 1 No_clan
Cotton_A_21558_CDS 103 276 101 277 PF12263.8 DUF3611 Family 3 176 177 180.0 3.8e-53 1 No_clan
Cotton_A_14348_CDS 2 157 1 157 PF04561.14 RNA_pol_Rpb2_2 Domain 34 190 190 146.1 9.3e-43 1 No_clan
Cotton_A_14348_CDS 218 286 218 286 PF04565.16 RNA_pol_Rpb2_3 Domain 1 68 68 85.4 2.1e-24 1 No_clan
Cotton_A_14348_CDS 423 821 422 821 PF00562.28 RNA_pol_Rpb2_6 Domain 2 390 390 408.5 3e-122 1 CL0410
Cotton_A_14348_CDS 823 892 823 897 PF04560.20 RNA_pol_Rpb2_7 Domain 1 79 87 69.2 2.9e-19 1 No_clan
Cotton_A_14348_CDS 915 1034 910 1047 PF04997.12 RNA_pol_Rpb1_1 Domain 8 93 312 58.1 8.6e-16 1 No_clan
Cotton_A_20899_CDS 28 125 25 126 PF13947.6 GUB_WAK_bind Domain 4 105 106 39.9 5.5e-10 1 No_clan
Cotton_A_20899_CDS 310 354 310 354 PF13639.6 zf-RING_2 Domain 1 44 44 43.3 3.4e-11 1 CL0229
Cotton_A_10569_CDS 44 428 44 435 PF03140.15 DUF247 Family 1 391 397 311.8 7.8e-93 1 No_clan
Cotton_A_13677_CDS 27 170 24 171 PF00407.19 Bet_v_1 Domain 6 148 151 43.9 2.1e-11 1 CL0209
Cotton_A_28923_CDS 6 167 1 174 PF00069.25 Pkinase Domain 109 257 264 80.3 1.4e-22 1 CL0016
Cotton_A_15622_CDS 91 412 90 421 PF07969.11 Amidohydro_3 Domain 2 310 473 180.2 1e-52 1 CL0034
Cotton_A_19569_CDS 13 166 3 167 PF00160.21 Pro_isomerase Domain 9 157 158 163.8 3.7e-48 1 CL0475
Cotton_A_36067_CDS 74 390 74 398 PF16363.5 GDP_Man_Dehyd Domain 1 324 332 182.4 1.4e-53 1 CL0063
Cotton_A_28853_CDS 24 268 24 269 PF06813.13 Nodulin-like Family 1 249 250 296.3 1.7e-88 1 CL0015
Cotton_A_03836_CDS 12 59 12 59 PF00249.31 Myb_DNA-binding Domain 1 46 46 53.9 1.4e-14 1 CL0123
Cotton_A_03836_CDS 66 109 65 110 PF00249.31 Myb_DNA-binding Domain 2 45 46 58.7 4.6e-16 1 CL0123
Cotton_A_36252_CDS 3 69 1 69 PF01058.22 Oxidored_q6 Family 61 131 131 68.7 4.1e-19 1 No_clan
Cotton_A_14058_CDS 87 223 7 224 PF16213.5 DCB Family 56 177 178 97.2 8.4e-28 1 No_clan
Cotton_A_14058_CDS 310 458 308 459 PF12783.7 Sec7_N Domain 3 157 158 129.5 1e-37 1 No_clan
Cotton_A_14058_CDS 546 725 543 725 PF01369.20 Sec7 Domain 4 183 183 219.3 3e-65 1 No_clan
Cotton_A_14058_CDS 1037 1119 1037 1120 PF09324.10 DUF1981 Family 1 83 84 88.3 2.3e-25 1 No_clan
Cotton_A_08876_CDS 6 322 5 355 PF01494.19 FAD_binding_3 Family 3 323 349 96.3 2.1e-27 1 CL0063
Cotton_A_10714_CDS 102 281 101 281 PF14299.6 PP2 Family 2 146 146 157.6 2e-46 1 No_clan
Cotton_A_19720_CDS 12 56 11 59 PF00249.31 Myb_DNA-binding Domain 2 42 46 25.0 1.6e-05 1 CL0123
Cotton_A_12377_CDS 2 128 1 133 PF01652.18 IF4E Domain 26 154 159 153.7 3.4e-45 1 CL0625
Cotton_A_00347_CDS 8 458 4 459 PF05056.12 DUF674 Family 5 448 449 353.2 2.1e-105 1 No_clan
Cotton_A_00347_CDS 479 719 464 720 PF05056.12 DUF674 Family 207 448 449 178.0 2.9e-52 1 No_clan
Cotton_A_08608_CDS 73 265 73 265 PF03798.16 TRAM_LAG1_CLN8 Domain 1 198 198 104.1 7.6e-30 1 No_clan
Cotton_A_19273_CDS 78 110 78 111 PF08880.11 QLQ Domain 1 33 35 30.2 2.7e-07 1 No_clan
Cotton_A_19273_CDS 135 176 134 176 PF08879.10 WRC Domain 2 43 43 73.4 8.7e-21 1 No_clan
Cotton_A_33292_CDS 118 153 116 160 PF00646.33 F-box Domain 3 38 48 32.6 4.9e-08 1 CL0271
Cotton_A_17711_CDS 319 430 318 452 PF00664.23 ABC_membrane Family 2 115 274 38.4 1e-09 1 CL0241
Cotton_A_17711_CDS 500 635 500 636 PF00005.27 ABC_tran Domain 1 136 137 62.3 6.5e-17 1 CL0023
Cotton_A_17711_CDS 821 1072 820 1091 PF00664.23 ABC_membrane Family 2 255 274 96.4 2.2e-27 1 CL0241
Cotton_A_17711_CDS 1164 1310 1162 1310 PF00005.27 ABC_tran Domain 3 137 137 102.9 1.9e-29 1 CL0023
Cotton_A_30732_CDS 415 571 414 571 PF02182.17 SAD_SRA Domain 2 157 157 129.0 1.2e-37 1 CL0178
Cotton_A_30732_CDS 693 816 693 816 PF00856.28 SET Family 1 169 169 71.3 1.2e-19 1 No_clan
Cotton_A_18138_CDS 102 164 101 164 PF00190.22 Cupin_1 Domain 89 151 151 60.0 1.9e-16 1 CL0029
Cotton_A_38861_CDS 78 144 76 149 PF02617.17 ClpS Family 3 68 80 65.8 2.2e-18 1 No_clan
Cotton_A_31509_CDS 205 224 205 227 PF00560.33 LRR_1 Repeat 1 20 23 14.0 0.058 1 CL0022
Cotton_A_31509_CDS 276 334 276 335 PF13855.6 LRR_8 Repeat 1 59 61 28.9 7.1e-07 1 CL0022
Cotton_A_20724_CDS 110 571 110 571 PF00759.19 Glyco_hydro_9 Domain 1 411 411 390.0 1.7e-116 1 CL0059
Cotton_A_03634_CDS 32 405 31 406 PF07712.12 SURNod19 Domain 2 376 377 608.7 3.3e-183 1 No_clan
Cotton_A_28127_CDS 5 40 3 43 PF00646.33 F-box Domain 3 38 48 25.2 1.1e-05 1 CL0271
Cotton_A_15564_CDS 30 117 30 118 PF01190.17 Pollen_Ole_e_I Family 1 97 99 32.9 6.3e-08 1 CL0287
Cotton_A_04664_CDS 13 147 11 147 PF04885.13 Stig1 Family 3 139 139 143.0 8.4e-42 1 No_clan
Cotton_A_26210_CDS 106 177 105 177 PF11523.8 DUF3223 Family 3 75 75 79.7 2.1e-22 1 No_clan
Cotton_A_19111_CDS 55 158 55 158 PF00011.21 HSP20 Family 1 102 102 104.4 3e-30 1 CL0190
Cotton_A_39715_CDS 161 320 160 320 PF02182.17 SAD_SRA Domain 2 157 157 148.7 1.1e-43 1 CL0178
Cotton_A_39715_CDS 352 450 351 450 PF05033.16 Pre-SET Family 2 109 109 57.0 2.6e-15 1 No_clan
Cotton_A_39715_CDS 469 610 469 610 PF00856.28 SET Family 1 169 169 65.0 1e-17 1 No_clan
Cotton_A_36312_CDS 111 506 111 507 PF10255.9 Paf67 Family 1 404 405 498.1 1.9e-149 1 CL0020
Cotton_A_19740_CDS 102 184 101 193 PF01453.24 B_lectin Domain 2 89 105 54.3 1.6e-14 1 No_clan
Cotton_A_19740_CDS 337 382 332 392 PF08276.11 PAN_2 Domain 5 50 67 25.8 8.4e-06 1 CL0168
Cotton_A_39027_CDS 32 106 22 110 PF00295.17 Glyco_hydro_28 Domain 16 89 325 36.9 2.2e-09 1 CL0268
Cotton_A_15379_CDS 18 140 16 167 PF10358.9 NT-C2 Family 6 112 146 39.1 5.8e-10 1 CL0154
Cotton_A_04596_CDS 11 74 10 75 PF01423.22 LSM Domain 2 66 67 50.4 1.3e-13 1 CL0527
Cotton_A_03245_CDS 1 127 1 167 PF01758.16 SBF Family 8 135 195 40.5 2.3e-10 1 CL0064
Cotton_A_32612_CDS 280 348 279 350 PF04564.15 U-box Domain 3 71 73 65.5 3.5e-18 1 CL0229
Cotton_A_32612_CDS 413 449 413 450 PF00514.23 Arm Repeat 4 40 41 32.7 4.9e-08 1 CL0020
Cotton_A_19770_CDS 12 48 12 48 PF08071.12 RS4NT Domain 1 37 37 68.1 4.9e-19 1 No_clan
Cotton_A_19770_CDS 52 99 51 99 PF01479.25 S4 Domain 2 48 48 29.0 6.5e-07 1 CL0492
Cotton_A_19770_CDS 104 178 104 178 PF00900.20 Ribosomal_S4e Family 1 75 75 115.7 6.3e-34 1 CL0021
Cotton_A_19770_CDS 186 219 186 220 PF00467.29 KOW Family 1 31 32 27.0 2.9e-06 1 CL0107
Cotton_A_19770_CDS 221 267 221 268 PF16121.5 40S_S4_C Family 1 47 48 80.3 5.6e-23 1 No_clan
Cotton_A_04856_CDS 106 167 106 167 PF00226.31 DnaJ Domain 1 63 63 83.4 9e-24 1 CL0392
Cotton_A_04856_CDS 262 333 258 338 PF09320.11 DUF1977 Family 4 72 105 32.6 7.4e-08 1 No_clan
Cotton_A_27436_CDS 18 262 18 262 PF07795.11 DUF1635 Family 1 224 224 317.2 6.7e-95 1 No_clan
Cotton_A_09029_CDS 50 84 50 89 PF00462.24 Glutaredoxin Domain 1 35 60 25.6 1e-05 1 CL0172
Cotton_A_30131_CDS 158 489 158 490 PF10250.9 O-FucT Family 1 335 336 242.9 7.4e-72 1 CL0113
Cotton_A_08545_CDS 3 59 3 60 PF04844.13 Ovate Family 1 57 58 58.8 3.8e-16 1 No_clan
Cotton_A_03050_CDS 51 137 48 143 PF12796.7 Ank_2 Repeat 4 79 83 33.8 3.9e-08 1 CL0465
Cotton_A_03050_CDS 141 203 133 208 PF12796.7 Ank_2 Repeat 24 78 83 30.7 3.4e-07 1 CL0465
Cotton_A_03050_CDS 207 264 200 271 PF12796.7 Ank_2 Repeat 24 73 83 31.3 2.3e-07 1 CL0465
Cotton_A_03050_CDS 383 510 379 512 PF01529.20 DHHC Family 6 132 134 107.4 5.6e-31 1 No_clan
Cotton_A_02570_CDS 38 113 32 116 PF00478.25 IMPDH Domain 65 137 345 36.2 3.3e-09 1 CL0036
Cotton_A_02570_CDS 117 194 112 208 PF00478.25 IMPDH Domain 175 252 345 110.5 8.6e-32 1 CL0036
Cotton_A_36058_CDS 102 229 102 230 PF00828.19 Ribosomal_L27A Family 1 127 128 107.0 1e-30 1 CL0588
Cotton_A_01384_CDS 59 513 59 518 PF00067.22 p450 Domain 1 457 463 317.7 1.2e-94 1 No_clan
Cotton_A_30561_CDS 22 274 21 282 PF01370.21 Epimerase Family 2 231 241 95.0 4.7e-27 1 CL0063
Cotton_A_36360_CDS 70 219 69 221 PF02878.16 PGM_PMM_I Domain 2 136 138 99.2 1.6e-28 1 No_clan
Cotton_A_36360_CDS 242 350 240 350 PF02879.16 PGM_PMM_II Domain 3 103 103 75.0 6e-21 1 No_clan
Cotton_A_36360_CDS 354 453 354 473 PF02880.16 PGM_PMM_III Domain 1 97 114 41.7 1.1e-10 1 No_clan
Cotton_A_18094_CDS 1 132 1 133 PF00235.19 Profilin Domain 1 126 127 144.9 1.4e-42 1 CL0431
Cotton_A_21818_CDS 1 128 1 136 PF00407.19 Bet_v_1 Domain 1 127 151 87.4 8.9e-25 1 CL0209
Cotton_A_05000_CDS 29 84 28 84 PF00046.29 Homeodomain Domain 2 57 57 60.7 8.8e-17 1 CL0123
Cotton_A_14900_CDS 111 148 110 148 PF00400.32 WD40 Repeat 2 38 38 30.3 5e-07 1 CL0186
Cotton_A_14900_CDS 168 203 162 203 PF00400.32 WD40 Repeat 6 38 38 13.4 0.11 1 CL0186
Cotton_A_14900_CDS 260 295 257 295 PF00400.32 WD40 Repeat 4 38 38 32.7 8.7e-08 1 CL0186
Cotton_A_07631_CDS 14 118 10 119 PF03732.17 Retrotrans_gag Family 14 95 96 28.2 1.8e-06 1 CL0523
Cotton_A_09285_CDS 21 303 20 303 PF04757.14 Pex2_Pex12 Family 2 225 225 166.1 8.6e-49 1 No_clan
Cotton_A_38087_CDS 176 472 176 475 PF06046.13 Sec6 Family 1 288 574 188.3 2e-55 1 CL0295
Cotton_A_38087_CDS 502 767 497 772 PF06046.13 Sec6 Family 285 569 574 211.2 2.3e-62 1 CL0295
Cotton_A_22485_CDS 55 504 55 510 PF00067.22 p450 Domain 1 456 463 327.0 1.9e-97 1 No_clan
Cotton_A_15589_CDS 28 65 27 65 PF08263.12 LRRNT_2 Family 2 41 41 31.1 2.1e-07 1 No_clan
Cotton_A_15589_CDS 322 584 319 586 PF00069.25 Pkinase Domain 5 260 264 125.3 2.7e-36 1 CL0016
Cotton_A_00324_CDS 1 127 1 127 PF11960.8 DUF3474 Family 1 135 135 132.0 1.5e-38 1 No_clan
Cotton_A_00324_CDS 135 389 133 394 PF00487.24 FA_desaturase Domain 3 247 254 119.2 2.6e-34 1 No_clan
Cotton_A_24900_CDS 68 115 63 116 PF02800.20 Gp_dh_C Domain 61 108 158 62.2 4.2e-17 1 CL0139
Cotton_A_30036_CDS 72 309 61 310 PF07714.17 Pkinase_Tyr Domain 14 258 259 89.8 1.7e-25 1 CL0016
Cotton_A_05476_CDS 3 98 1 98 PF00453.18 Ribosomal_L20 Family 12 107 107 145.0 7.5e-43 1 No_clan
Cotton_A_00165_CDS 5 274 4 275 PF12767.7 SAGA-Tad1 Family 2 234 235 186.6 5.9e-55 1 No_clan
Cotton_A_15704_CDS 90 145 90 145 PF16450.5 Prot_ATP_ID_OB Domain 1 57 57 35.8 5.9e-09 1 CL0021
Cotton_A_15704_CDS 203 336 203 336 PF00004.29 AAA Domain 1 132 132 150.6 3.1e-44 1 CL0023
Cotton_A_15704_CDS 356 398 355 399 PF17862.1 AAA_lid_3 Domain 2 44 45 32.5 5.4e-08 1 CL0671
Cotton_A_02698_CDS 95 552 80 552 PF03254.13 XG_FTase Family 14 478 478 757.2 6.2e-228 1 No_clan
Cotton_A_28669_CDS 168 276 167 276 PF00784.17 MyTH4 Family 2 108 108 93.3 1.2e-26 1 No_clan
Cotton_A_28669_CDS 286 359 285 360 PF09379.10 FERM_N Domain 1 64 65 40.1 2.5e-10 1 CL0072
Cotton_A_28669_CDS 389 502 386 503 PF00373.18 FERM_M Domain 4 118 118 58.4 8.6e-16 1 CL0632
Cotton_A_28669_CDS 878 1193 878 1193 PF00225.23 Kinesin Domain 1 333 333 351.4 4.1e-105 1 CL0023
Cotton_A_19604_CDS 338 592 337 593 PF01803.16 LIM_bind Family 2 240 241 203.6 3.2e-60 1 No_clan
Cotton_A_08980_CDS 103 221 102 223 PF02893.20 GRAM Domain 2 111 114 62.6 2.8e-17 1 CL0266
Cotton_A_31611_CDS 103 392 103 392 PF08392.12 FAE1_CUT1_RppA Family 1 290 290 484.5 1e-145 1 CL0046
Cotton_A_31611_CDS 408 489 405 490 PF08541.10 ACP_syn_III_C Domain 11 89 90 40.0 3.2e-10 1 CL0046
Cotton_A_40866_CDS 62 172 61 173 PF15277.6 Sec3-PIP2_bind Domain 2 89 90 52.3 4.5e-14 1 CL0266
Cotton_A_40866_CDS 251 902 249 903 PF09763.9 Sec3_C Family 3 699 700 279.7 5.2e-83 1 CL0295
Cotton_A_30966_CDS 220 256 218 256 PF00400.32 WD40 Repeat 3 38 38 12.5 0.21 1 CL0186
Cotton_A_32130_CDS 166 222 166 223 PF03106.15 WRKY Domain 1 58 59 89.4 1.2e-25 1 CL0274
Cotton_A_38137_CDS 1 154 1 154 PF00407.19 Bet_v_1 Domain 1 151 151 69.0 3.9e-19 1 CL0209
Cotton_A_28976_CDS 2 48 1 48 PF00226.31 DnaJ Domain 15 63 63 41.3 1.2e-10 1 CL0392
Cotton_A_28976_CDS 79 134 79 134 PF13370.6 Fer4_13 Domain 1 58 58 41.0 2e-10 1 CL0344
Cotton_A_05893_CDS 119 137 109 138 PF14383.6 VARLMGL Domain 13 31 32 28.4 8.2e-07 1 No_clan
Cotton_A_05893_CDS 227 271 227 271 PF12552.8 DUF3741 Family 1 45 45 83.5 7.2e-24 1 No_clan
Cotton_A_05893_CDS 820 994 819 994 PF14309.6 DUF4378 Family 2 165 165 109.1 2.9e-31 1 No_clan
Cotton_A_23890_CDS 115 357 115 358 PF02358.16 Trehalose_PPase Family 1 232 233 245.7 3.2e-73 1 CL0137
Cotton_A_20690_CDS 69 207 69 209 PF01565.23 FAD_binding_4 Domain 1 136 139 87.0 8.9e-25 1 CL0077
Cotton_A_20690_CDS 461 518 461 518 PF08031.12 BBE Domain 1 46 46 77.6 5.4e-22 1 CL0277
Cotton_A_10213_CDS 141 184 140 184 PF13639.6 zf-RING_2 Domain 2 44 44 47.5 1.6e-12 1 CL0229
Cotton_A_18889_CDS 30 107 29 107 PF05922.16 Inhibitor_I9 Domain 2 82 82 57.2 2e-15 1 CL0570
Cotton_A_18889_CDS 130 602 130 602 PF00082.22 Peptidase_S8 Domain 1 298 298 181.3 2.5e-53 1 No_clan
Cotton_A_18889_CDS 372 456 370 456 PF02225.22 PA Family 3 89 89 39.2 5.3e-10 1 CL0364
Cotton_A_18889_CDS 659 760 659 760 PF17766.1 fn3_6 Domain 1 99 99 98.9 1.5e-28 1 CL0159
Cotton_A_25374_CDS 13 84 13 84 PF11326.8 DUF3128 Family 1 79 79 94.2 4.5e-27 1 No_clan
Cotton_A_00258_CDS 5 376 3 376 PF00022.19 Actin Family 3 407 407 494.7 1.6e-148 1 CL0108
Cotton_A_14942_CDS 103 274 103 275 PF04144.13 SCAMP Family 1 173 174 164.6 2.6e-48 1 No_clan
Cotton_A_17936_CDS 17 125 17 125 PF00954.20 S_locus_glycop Domain 1 111 111 88.2 5e-25 1 No_clan
Cotton_A_17936_CDS 146 211 138 211 PF08276.11 PAN_2 Domain 1 67 67 69.6 1.8e-19 1 CL0168
Cotton_A_31153_CDS 1 40 1 41 PF13976.6 gag_pre-integrs Domain 29 66 67 36.3 3.6e-09 1 No_clan
Cotton_A_13363_CDS 68 125 67 125 PF13855.6 LRR_8 Repeat 2 61 61 35.6 5.6e-09 1 CL0022
Cotton_A_34630_CDS 30 397 29 397 PF00155.21 Aminotran_1_2 Domain 2 363 363 322.5 3.5e-96 1 CL0061
Cotton_A_34432_CDS 61 140 61 153 PF04504.14 DUF573 Family 1 80 95 57.9 1.2e-15 1 CL0123
Cotton_A_12372_CDS 16 122 15 122 PF01655.18 Ribosomal_L32e Family 2 108 108 168.5 4.7e-50 1 No_clan
Cotton_A_12678_CDS 6 421 6 430 PF03094.15 Mlo Family 1 420 479 612.5 3.9e-184 1 No_clan
Cotton_A_12678_CDS 466 532 460 533 PF03094.15 Mlo Family 417 478 479 48.0 5.9e-13 1 No_clan
Cotton_A_33849_CDS 269 329 233 335 PF01591.18 6PF2K Domain 137 196 223 25.2 8.8e-06 1 CL0023
Cotton_A_25087_CDS 61 85 60 86 PF13912.6 zf-C2H2_6 Domain 2 26 27 29.3 6.3e-07 1 CL0361
Cotton_A_22632_CDS 156 229 156 230 PF03110.14 SBP Domain 1 74 75 102.1 1.5e-29 1 No_clan
Cotton_A_28431_CDS 1 93 1 98 PF00067.22 p450 Domain 367 458 463 94.2 7.6e-27 1 No_clan
Cotton_A_30572_CDS 2 97 1 110 PF12624.7 Chorein_N Family 2 95 116 43.4 3.1e-11 1 No_clan
Cotton_A_01485_CDS 90 246 89 247 PF00484.19 Pro_CA Domain 2 155 156 139.9 8.2e-41 1 No_clan
Cotton_A_06532_CDS 74 154 67 155 PF07885.16 Ion_trans_2 Family 2 78 79 64.2 7.7e-18 1 CL0030
Cotton_A_06532_CDS 194 267 193 269 PF07885.16 Ion_trans_2 Family 1 77 79 50.1 2e-13 1 CL0030
Cotton_A_00502_CDS 204 485 203 485 PF03016.15 Exostosin Family 2 300 300 200.9 2.6e-59 1 No_clan
Cotton_A_00502_CDS 597 871 596 874 PF03016.15 Exostosin Family 2 297 300 173.7 5e-51 1 No_clan
Cotton_A_18988_CDS 88 175 88 175 PF11942.8 Spt5_N Domain 1 99 99 54.0 2.6e-14 1 No_clan
Cotton_A_18988_CDS 181 262 181 262 PF03439.13 Spt5-NGN Family 1 84 84 82.0 2.2e-23 1 CL0439
Cotton_A_18988_CDS 477 497 477 499 PF00467.29 KOW Family 1 21 32 28.6 9.2e-07 1 CL0107
Cotton_A_04759_CDS 7 73 5 74 PF01423.22 LSM Domain 3 66 67 63.8 8.4e-18 1 CL0527
Cotton_A_21773_CDS 4 79 3 82 PF02519.14 Auxin_inducible Family 2 69 90 60.5 1.3e-16 1 No_clan
Cotton_A_07777_CDS 329 443 328 446 PF07986.12 TBCC Domain 2 116 120 106.4 7.2e-31 1 CL0391
Cotton_A_25786_CDS 19 80 18 82 PF13499.6 EF-hand_7 Domain 2 69 71 40.1 3.8e-10 1 CL0220
Cotton_A_25786_CDS 94 156 93 157 PF13499.6 EF-hand_7 Domain 2 70 71 47.3 2.1e-12 1 CL0220
Cotton_A_26687_CDS 40 218 40 219 PF04832.12 SOUL Family 1 167 168 151.4 2.4e-44 1 CL0319
Cotton_A_08344_CDS 8 100 3 100 PF14368.6 LTP_2 Family 6 97 97 59.9 2e-16 1 CL0482
Cotton_A_15490_CDS 80 119 80 132 PF13881.6 Rad60-SLD_2 Domain 1 40 111 49.4 4.1e-13 1 CL0072
Cotton_A_35075_CDS 21 214 20 220 PF00069.25 Pkinase Domain 2 187 264 148.9 1.8e-43 1 CL0016
Cotton_A_13965_CDS 9 47 8 49 PF12937.7 F-box-like Domain 2 38 48 30.1 3.2e-07 1 CL0271
Cotton_A_16120_CDS 41 148 41 152 PF14226.6 DIOX_N Family 1 117 118 88.6 4.7e-25 1 CL0029
Cotton_A_16120_CDS 199 294 196 294 PF03171.20 2OG-FeII_Oxy Domain 5 101 101 85.9 2.2e-24 1 CL0029
Cotton_A_14109_CDS 114 192 98 199 PF12796.7 Ank_2 Repeat 20 74 83 47.2 2.4e-12 1 CL0465
Cotton_A_07833_CDS 329 445 204 447 PF04577.14 DUF563 Family 101 205 209 65.3 8.1e-18 1 No_clan
Cotton_A_21683_CDS 61 127 60 127 PF00550.25 PP-binding Domain 2 67 67 48.3 9.7e-13 1 CL0314
Cotton_A_33709_CDS 48 164 32 164 PF04520.13 Senescence_reg Family 49 168 168 125.9 2.8e-36 1 No_clan
Cotton_A_23850_CDS 18 160 18 161 PF01812.20 5-FTHF_cyc-lig Family 1 128 187 32.3 8.3e-08 1 CL0246
Cotton_A_23850_CDS 185 253 174 253 PF01812.20 5-FTHF_cyc-lig Family 125 187 187 55.4 6.7e-15 1 CL0246
Cotton_A_05609_CDS 91 168 89 169 PF10258.9 RNA_GG_bind Domain 3 83 84 75.0 3.6e-21 1 No_clan
Cotton_A_17610_CDS 35 114 13 114 PF00234.22 Tryp_alpha_amyl Family 11 87 87 28.6 1.4e-06 1 CL0482
Cotton_A_32556_CDS 192 239 191 240 PF13041.6 PPR_2 Repeat 2 49 50 31.1 2e-07 1 CL0020
Cotton_A_32556_CDS 264 290 264 294 PF01535.20 PPR Family 1 27 31 11.7 0.25 1 CL0020
Cotton_A_32556_CDS 317 474 308 488 PF17177.4 PPR_long Domain 14 180 212 45.5 5.6e-12 1 CL0020
Cotton_A_32556_CDS 524 566 520 569 PF13041.6 PPR_2 Repeat 5 47 50 34.8 1.4e-08 1 CL0020
Cotton_A_32556_CDS 595 638 590 639 PF13041.6 PPR_2 Repeat 6 49 50 32.3 8.5e-08 1 CL0020
Cotton_A_32556_CDS 661 705 660 707 PF13041.6 PPR_2 Repeat 2 46 50 34.0 2.5e-08 1 CL0020
Cotton_A_32556_CDS 732 762 732 762 PF01535.20 PPR Family 1 31 31 14.8 0.025 1 CL0020
Cotton_A_32556_CDS 766 807 764 812 PF13041.6 PPR_2 Repeat 3 44 50 32.3 8.6e-08 1 CL0020
Cotton_A_05508_CDS 16 85 16 86 PF00076.22 RRM_1 Domain 1 69 70 59.4 2.2e-16 1 CL0221
Cotton_A_05508_CDS 104 172 104 173 PF00076.22 RRM_1 Domain 1 69 70 69.6 1.5e-19 1 CL0221
Cotton_A_05508_CDS 195 263 195 264 PF00076.22 RRM_1 Domain 1 69 70 68.7 2.7e-19 1 CL0221
Cotton_A_05508_CDS 298 366 298 367 PF00076.22 RRM_1 Domain 1 69 70 61.4 5.3e-17 1 CL0221
Cotton_A_05508_CDS 543 609 542 609 PF00658.18 PABP Family 2 68 68 98.5 1.8e-28 1 No_clan
Cotton_A_05508_CDS 690 754 690 755 PF01246.20 Ribosomal_L24e Domain 1 65 66 93.0 9.4e-27 1 CL0175
Cotton_A_03388_CDS 18 126 18 129 PF00072.24 Response_reg Domain 1 109 112 52.2 6e-14 1 CL0304
Cotton_A_03388_CDS 385 428 384 428 PF13639.6 zf-RING_2 Domain 2 44 44 50.1 2.6e-13 1 CL0229
Cotton_A_30259_CDS 113 176 112 176 PF02319.20 E2F_TDP Domain 2 71 71 86.0 1.4e-24 1 CL0123
Cotton_A_04872_CDS 118 212 109 213 PF03754.13 DUF313 Family 11 112 113 65.1 6.2e-18 1 CL0405
Cotton_A_26983_CDS 3 48 1 74 PF00300.22 His_Phos_1 Domain 114 159 194 22.3 8.6e-05 1 CL0071
Cotton_A_11109_CDS 24 63 23 87 PF05903.14 Peptidase_C97 Domain 2 50 151 33.4 3.7e-08 1 CL0125
Cotton_A_12593_CDS 95 347 85 348 PF00481.21 PP2C Family 12 257 258 224.4 1.8e-66 1 CL0238
Cotton_A_29346_CDS 77 125 76 126 PF00847.20 AP2 Domain 2 53 54 51.9 6.7e-14 1 CL0081
Cotton_A_08469_CDS 96 357 96 465 PF00365.20 PFK Domain 1 234 284 124.1 6.5e-36 1 CL0240
Cotton_A_30286_CDS 27 70 26 71 PF00401.20 ATP-synt_DE Domain 2 46 47 33.8 3e-08 1 No_clan
Cotton_A_33811_CDS 37 177 36 189 PF00106.25 adh_short Domain 2 137 195 97.7 5.6e-28 1 CL0063
Cotton_A_34639_CDS 91 126 88 126 PF13917.6 zf-CCHC_3 Domain 4 41 41 71.6 3.8e-20 1 CL0511
Cotton_A_38139_CDS 75 136 75 136 PF04818.13 CTD_bind Family 1 63 63 70.9 1.2e-19 1 No_clan
Cotton_A_10319_CDS 1 144 1 145 PF01554.18 MatE Family 17 160 161 106.5 1e-30 1 CL0222
Cotton_A_10319_CDS 206 367 206 368 PF01554.18 MatE Family 1 159 161 114.0 5.2e-33 1 CL0222
Cotton_A_19757_CDS 39 427 39 428 PF00067.22 p450 Domain 1 381 463 230.8 2.8e-68 1 No_clan
Cotton_A_18018_CDS 50 155 50 156 PF09118.11 DUF1929 Domain 1 95 96 69.9 1.7e-19 1 CL0159
Cotton_A_34614_CDS 10 79 10 81 PF04564.15 U-box Domain 1 70 73 67.3 1e-18 1 CL0229
Cotton_A_22676_CDS 20 192 19 194 PF03208.19 PRA1 Family 2 141 143 150.1 3e-44 1 No_clan
Cotton_A_00734_CDS 95 305 95 306 PF00264.20 Tyrosinase Domain 1 221 222 117.4 1.1e-33 1 CL0205
Cotton_A_00734_CDS 312 362 312 363 PF12142.8 PPO1_DWL Domain 1 51 52 82.0 1.9e-23 1 No_clan
Cotton_A_00734_CDS 392 514 389 514 PF12143.8 PPO1_KFDV Domain 4 130 130 102.9 1.3e-29 1 CL0122
Cotton_A_20168_CDS 3 74 2 75 PF00240.23 ubiquitin Domain 1 71 72 45.2 5.8e-12 1 CL0072
Cotton_A_10249_CDS 139 266 114 279 PF04893.17 Yip1 Domain 17 165 172 47.7 1.4e-12 1 CL0112
Cotton_A_16945_CDS 51 369 48 378 PF11744.8 ALMT Family 6 333 469 399.3 2.3e-119 1 CL0307
Cotton_A_07251_CDS 127 261 127 262 PF02789.17 Peptidase_M17_N Domain 1 125 126 85.3 3e-24 1 CL0223
Cotton_A_07251_CDS 298 426 296 428 PF00883.21 Peptidase_M17 Domain 3 128 311 121.4 4.6e-35 1 CL0035
Cotton_A_07251_CDS 428 572 426 572 PF00883.21 Peptidase_M17 Domain 161 311 311 185.5 1.4e-54 1 CL0035
Cotton_A_07980_CDS 43 151 42 151 PF00565.17 SNase Domain 2 108 108 44.3 2.1e-11 1 CL0049
Cotton_A_07980_CDS 273 365 252 366 PF00565.17 SNase Domain 19 107 108 52.4 6.3e-14 1 CL0049
Cotton_A_07980_CDS 618 716 616 716 PF00565.17 SNase Domain 3 108 108 50.8 2e-13 1 CL0049
Cotton_A_07980_CDS 735 858 732 859 PF00567.24 TUDOR Domain 4 121 122 69.3 2.9e-19 1 CL0049
Cotton_A_07980_CDS 866 970 848 971 PF00565.17 SNase Domain 19 107 108 33.2 5.7e-08 1 CL0049
Cotton_A_19490_CDS 86 404 85 404 PF08627.10 CRT-like Family 2 334 334 134.4 4.2e-39 1 CL0184
Cotton_A_13872_CDS 87 114 87 121 PF00786.28 PBD Domain 1 29 59 23.6 5e-05 1 No_clan
Cotton_A_13872_CDS 221 312 195 318 PF00620.27 RhoGAP Domain 47 145 152 52.9 3.6e-14 1 CL0409
Cotton_A_31148_CDS 109 315 103 315 PF01823.19 MACPF Domain 9 209 209 89.4 3.4e-25 1 CL0293
Cotton_A_09956_CDS 31 218 30 218 PF06697.12 DUF1191 Family 2 183 183 229.4 2.6e-68 1 CL0661
Cotton_A_23652_CDS 13 75 13 75 PF00462.24 Glutaredoxin Domain 1 60 60 43.0 3.8e-11 1 CL0172
Cotton_A_02229_CDS 6 62 5 62 PF00831.23 Ribosomal_L29 Family 2 57 57 55.8 3.2e-15 1 CL0346
Cotton_A_28345_CDS 55 106 55 107 PF09713.10 A_thal_3526 Domain 1 52 53 90.2 7.1e-26 1 No_clan
Cotton_A_28490_CDS 123 330 123 339 PF01373.17 Glyco_hydro_14 Domain 1 195 402 266.1 5.1e-79 1 CL0058
Cotton_A_08648_CDS 37 385 37 386 PF00067.22 p450 Domain 1 375 463 162.8 1.1e-47 1 No_clan
Cotton_A_29685_CDS 1 337 1 340 PF01603.20 B56 Family 75 410 415 523.8 3.1e-157 1 CL0020
Cotton_A_06260_CDS 3 57 3 68 PF14215.6 bHLH-MYC_N Family 1 42 175 38.9 1.1e-09 1 CL0161
Cotton_A_06260_CDS 68 171 59 171 PF14215.6 bHLH-MYC_N Family 82 175 175 65.8 5.8e-18 1 CL0161
Cotton_A_04046_CDS 29 586 28 586 PF02705.16 K_trans Family 2 534 534 601.3 1.5e-180 1 CL0062
Cotton_A_11762_CDS 184 370 183 371 PF00337.22 Gal-bind_lectin Domain 2 133 134 125.3 1.1e-36 1 CL0004
Cotton_A_25828_CDS 32 120 32 123 PF01190.17 Pollen_Ole_e_I Family 1 94 99 73.6 1.3e-20 1 CL0287
Cotton_A_02999_CDS 44 232 16 232 PF02115.17 Rho_GDI Domain 6 195 195 219.8 2.6e-65 1 CL0159
Cotton_A_00143_CDS 19 273 18 290 PF06728.13 PIG-U Family 2 230 382 165.2 2.3e-48 1 CL0111
Cotton_A_23728_CDS 51 212 41 222 PF10294.9 Methyltransf_16 Family 17 161 174 51.2 1.2e-13 1 CL0063
Cotton_A_38536_CDS 150 247 150 247 PF08414.10 NADPH_Ox Family 1 101 101 134.0 2e-39 1 CL0220
Cotton_A_38536_CDS 407 562 406 562 PF01794.19 Ferric_reduct Family 2 125 125 80.8 8.7e-23 1 CL0328
Cotton_A_38536_CDS 604 718 603 719 PF08022.12 FAD_binding_8 Domain 2 108 109 111.7 1.8e-32 1 CL0076
Cotton_A_38536_CDS 725 911 725 912 PF08030.12 NAD_binding_6 Domain 1 155 156 179.3 5.2e-53 1 CL0091
Cotton_A_07798_CDS 14 267 14 268 PF00069.25 Pkinase Domain 1 263 264 227.1 2.4e-67 1 CL0016
Cotton_A_39140_CDS 3 118 1 120 PF00311.17 PEPcase Family 171 282 795 57.3 8e-16 1 CL0151
Cotton_A_39140_CDS 190 313 188 316 PF00311.17 PEPcase Family 452 576 795 159.3 1.1e-46 1 CL0151
Cotton_A_16934_CDS 95 160 95 160 PF01106.17 NifU Family 1 67 67 90.1 7.3e-26 1 CL0232
Cotton_A_16934_CDS 176 238 176 238 PF01106.17 NifU Family 1 67 67 47.9 1.1e-12 1 CL0232
Cotton_A_01911_CDS 6 266 5 269 PF00335.20 Tetraspanin Family 2 226 229 85.8 3.5e-24 1 CL0347
Cotton_A_17978_CDS 10 310 10 310 PF05623.12 DUF789 Family 1 294 294 361.1 5.4e-108 1 No_clan
Cotton_A_10403_CDS 35 146 32 148 PF07732.15 Cu-oxidase_3 Domain 4 117 119 135.3 9.6e-40 1 CL0026
Cotton_A_10403_CDS 160 311 158 312 PF00394.22 Cu-oxidase Domain 3 158 159 111.5 4e-32 1 CL0026
Cotton_A_10403_CDS 434 548 411 549 PF07731.14 Cu-oxidase_2 Domain 28 136 137 100.7 5.4e-29 1 CL0026
Cotton_A_34560_CDS 11 133 11 133 PF02365.15 NAM Family 1 126 126 71.2 1.4e-19 1 No_clan
Cotton_A_33778_CDS 106 340 106 340 PF02358.16 Trehalose_PPase Family 1 233 233 256.2 1.9e-76 1 CL0137
Cotton_A_10540_CDS 17 178 17 179 PF00071.22 Ras Domain 1 161 162 222.3 2.5e-66 1 CL0023
Cotton_A_33177_CDS 25 159 24 160 PF00582.26 Usp Domain 4 140 141 28.5 1.8e-06 1 CL0039
Cotton_A_33177_CDS 428 634 425 694 PF00069.25 Pkinase Domain 4 204 264 156.5 8.3e-46 1 CL0016
Cotton_A_16397_CDS 32 345 32 345 PF03595.17 SLAC1 Family 1 324 324 171.5 2.6e-50 1 No_clan
Cotton_A_38162_CDS 33 179 32 179 PF11559.8 ADIP Coiled-coil 2 152 152 149.8 5.8e-44 1 No_clan
Cotton_A_31582_CDS 5 115 1 116 PF00125.24 Histone Domain 17 130 131 75.3 5.5e-21 1 CL0012
Cotton_A_17072_CDS 7 56 6 57 PF00847.20 AP2 Domain 2 53 54 44.5 1.3e-11 1 CL0081
Cotton_A_10446_CDS 56 472 56 490 PF13520.6 AA_permease_2 Family 1 410 425 190.2 5.4e-56 1 CL0062
Cotton_A_10446_CDS 503 553 503 553 PF13906.6 AA_permease_C Domain 1 51 51 50.9 1.1e-13 1 CL0062
Cotton_A_20668_CDS 65 174 65 175 PF14226.6 DIOX_N Family 1 117 118 83.1 2.5e-23 1 CL0029
Cotton_A_20668_CDS 220 284 216 284 PF03171.20 2OG-FeII_Oxy Domain 36 101 101 46.7 3.5e-12 1 CL0029
Cotton_A_12795_CDS 317 338 316 338 PF00642.24 zf-CCCH Family 6 27 27 23.7 3.3e-05 1 CL0537
Cotton_A_06981_CDS 55 111 54 112 PF02701.15 zf-Dof Family 2 58 59 111.4 1.6e-32 1 No_clan
Cotton_A_13130_CDS 20 90 5 91 PF02519.14 Auxin_inducible Family 20 89 90 88.3 2.8e-25 1 No_clan
Cotton_A_00986_CDS 95 277 95 277 PF03031.18 NIF Family 1 156 156 138.3 1.7e-40 1 CL0137
Cotton_A_30353_CDS 127 170 126 170 PF13639.6 zf-RING_2 Domain 2 44 44 52.0 6.4e-14 1 CL0229
Cotton_A_31864_CDS 1 95 1 104 PF05695.12 DUF825 Family 565 661 1486 170.6 3e-50 1 No_clan
Cotton_A_25104_CDS 4 241 2 256 PF03016.15 Exostosin Family 4 286 300 85.6 3.4e-24 1 No_clan
Cotton_A_03568_CDS 138 319 131 328 PF17874.1 TPR_MalT Domain 17 188 336 30.0 3.2e-07 1 CL0020
Cotton_A_03568_CDS 331 406 330 406 PF13424.6 TPR_12 Repeat 2 77 77 40.4 2.7e-10 1 CL0020
Cotton_A_03568_CDS 425 450 417 450 PF13181.6 TPR_8 Repeat 9 34 34 17.3 0.0038 1 CL0020
Cotton_A_03568_CDS 502 574 499 574 PF13424.6 TPR_12 Repeat 5 77 77 47.6 1.5e-12 1 CL0020
Cotton_A_00491_CDS 549 619 546 620 PF16135.5 Jas Family 4 75 76 82.1 2.4e-23 1 No_clan
Cotton_A_00491_CDS 661 702 660 703 PF00628.29 PHD Domain 2 51 52 31.7 1e-07 1 CL0390
Cotton_A_21668_CDS 126 159 120 159 PF00400.32 WD40 Repeat 7 38 38 25.4 1.8e-05 1 CL0186
Cotton_A_21668_CDS 168 202 165 203 PF00400.32 WD40 Repeat 4 37 38 18.5 0.0028 1 CL0186
Cotton_A_35587_CDS 246 315 246 316 PF00076.22 RRM_1 Domain 1 69 70 53.2 1.9e-14 1 CL0221
Cotton_A_08315_CDS 191 223 184 224 PF00514.23 Arm Repeat 8 40 41 30.2 3e-07 1 CL0020
Cotton_A_08315_CDS 226 265 226 266 PF00514.23 Arm Repeat 1 40 41 33.1 3.7e-08 1 CL0020
Cotton_A_08315_CDS 310 349 310 350 PF00514.23 Arm Repeat 1 40 41 21.8 0.00013 1 CL0020
Cotton_A_08315_CDS 542 644 539 646 PF00651.31 BTB Domain 4 109 111 88.2 4.1e-25 1 CL0033
Cotton_A_19614_CDS 10 241 9 329 PF03547.18 Mem_trans Family 2 230 387 311.5 5.4e-93 1 CL0064
Cotton_A_19614_CDS 349 443 347 443 PF03547.18 Mem_trans Family 293 387 387 125.8 1.4e-36 1 CL0064
Cotton_A_11501_CDS 15 142 14 142 PF03476.16 MOSC_N Domain 2 120 120 129.2 6.7e-38 1 No_clan
Cotton_A_11501_CDS 165 300 164 301 PF03473.17 MOSC Domain 2 130 131 103.1 1.1e-29 1 No_clan
Cotton_A_27772_CDS 51 229 51 230 PF13439.6 Glyco_transf_4 Domain 1 169 170 69.4 3.7e-19 1 CL0113
Cotton_A_27772_CDS 254 391 252 393 PF13692.6 Glyco_trans_1_4 Domain 3 132 134 60.0 3.2e-16 1 CL0113
Cotton_A_08702_CDS 110 238 110 239 PF00134.23 Cyclin_N Domain 1 126 127 144.5 1.3e-42 1 CL0065
Cotton_A_08702_CDS 241 363 241 364 PF02984.19 Cyclin_C Domain 1 118 119 118.1 2.2e-34 1 CL0065
Cotton_A_32670_CDS 383 577 382 577 PF03924.13 CHASE Domain 2 188 188 122.1 2.5e-35 1 CL0165
Cotton_A_32670_CDS 665 730 665 730 PF00512.25 HisKA Domain 1 67 67 62.7 2.5e-17 1 CL0025
Cotton_A_32670_CDS 777 944 777 949 PF02518.26 HATPase_c Domain 1 107 112 100.8 6.1e-29 1 CL0025
Cotton_A_32670_CDS 1129 1261 1129 1262 PF00072.24 Response_reg Domain 1 111 112 72.7 2.5e-20 1 CL0304
Cotton_A_02343_CDS 346 467 342 479 PF00566.18 RabGAP-TBC Family 72 195 215 109.6 1.7e-31 1 No_clan
Cotton_A_36154_CDS 189 289 189 291 PF02362.21 B3 Family 1 99 101 78.8 2.3e-22 1 CL0405
Cotton_A_36154_CDS 315 394 315 394 PF06507.13 Auxin_resp Family 1 83 83 110.0 5e-32 1 No_clan
Cotton_A_36154_CDS 586 657 441 663 PF02309.16 AUX_IAA Family 96 162 237 31.0 2.1e-07 1 CL0072
Cotton_A_36154_CDS 667 706 658 710 PF02309.16 AUX_IAA Family 193 232 237 30.5 3.1e-07 1 CL0072
Cotton_A_37269_CDS 27 299 26 301 PF00248.21 Aldo_ket_red Domain 2 291 294 170.1 5.8e-50 1 No_clan
Cotton_A_25056_CDS 10 78 10 81 PF04564.15 U-box Domain 1 69 73 64.7 6.3e-18 1 CL0229
Cotton_A_13078_CDS 79 207 79 207 PF02670.16 DXP_reductoisom Family 1 129 129 159.6 5.9e-47 1 CL0063
Cotton_A_13078_CDS 221 304 221 304 PF08436.12 DXP_redisom_C Domain 1 84 84 132.5 4.4e-39 1 CL0139
Cotton_A_13078_CDS 336 455 336 458 PF13288.6 DXPR_C Domain 1 112 115 122.2 1.3e-35 1 CL0063
Cotton_A_33997_CDS 21 75 17 75 PF13855.6 LRR_8 Repeat 7 61 61 33.4 2.8e-08 1 CL0022
Cotton_A_15126_CDS 30 506 24 506 PF02516.14 STT3 Family 6 488 488 395.7 3.3e-118 1 CL0111
Cotton_A_04594_CDS 1 435 1 436 PF02458.15 Transferase Family 1 433 434 291.6 8.4e-87 1 CL0149
Cotton_A_32736_CDS 34 96 33 96 PF03732.17 Retrotrans_gag Family 2 66 96 40.8 2e-10 1 CL0523
Cotton_A_07922_CDS 53 315 52 315 PF00069.25 Pkinase Domain 2 264 264 198.8 1e-58 1 CL0016
Cotton_A_32665_CDS 161 531 161 531 PF03514.14 GRAS Family 1 374 374 463.8 3.7e-139 1 CL0063
Cotton_A_00062_CDS 153 202 152 202 PF00249.31 Myb_DNA-binding Domain 2 46 46 34.3 1.9e-08 1 CL0123
Cotton_A_20270_CDS 20 93 16 99 PF14632.6 SPT6_acidic Family 5 69 89 33.0 7e-08 1 No_clan
Cotton_A_20270_CDS 725 879 721 879 PF14639.6 YqgF Domain 5 150 150 66.8 1.7e-18 1 CL0580
Cotton_A_20270_CDS 883 984 883 985 PF14635.6 HHH_7 Domain 1 103 104 64.5 9.1e-18 1 CL0198
Cotton_A_20270_CDS 1201 1402 1194 1403 PF14633.6 SH2_2 Domain 17 215 216 218.9 5.1e-65 1 CL0541
Cotton_A_09755_CDS 44 293 43 294 PF00141.23 peroxidase Domain 1 228 229 232.6 4.6e-69 1 CL0617
Cotton_A_11545_CDS 2 259 1 272 PF06732.11 Pescadillo_N Family 2 260 273 370.6 5e-111 1 No_clan
Cotton_A_11545_CDS 327 412 324 412 PF16589.5 BRCT_2 Family 4 85 85 28.8 1.2e-06 1 CL0459
Cotton_A_39272_CDS 62 147 61 205 PF03634.13 TCP Family 2 90 156 108.8 3.8e-31 1 No_clan
Cotton_A_11671_CDS 70 115 70 115 PF13639.6 zf-RING_2 Domain 1 44 44 47.9 1.2e-12 1 CL0229
Cotton_A_38994_CDS 32 88 32 88 PF11961.8 DUF3475 Family 1 57 57 83.6 7.4e-24 1 No_clan
Cotton_A_38994_CDS 294 382 294 382 PF05003.12 DUF668 Family 1 89 89 101.0 3.9e-29 1 No_clan
Cotton_A_00090_CDS 9 83 9 83 PF12609.8 DUF3774 Family 1 74 74 50.9 2.4e-13 1 No_clan
Cotton_A_08403_CDS 70 175 66 188 PF12146.8 Hydrolase_4 Family 6 113 239 30.6 1.9e-07 1 CL0028
Cotton_A_36245_CDS 87 210 87 210 PF07889.12 DUF1664 Coiled-coil 1 124 124 163.0 2.8e-48 1 No_clan
Cotton_A_29008_CDS 37 125 30 126 PF00085.20 Thioredoxin Domain 12 102 103 99.5 8.8e-29 1 CL0172
Cotton_A_18399_CDS 4 27 3 29 PF13912.6 zf-C2H2_6 Domain 2 25 27 24.9 1.4e-05 1 CL0361
Cotton_A_10273_CDS 10 139 7 140 PF10513.9 EPL1 Family 4 155 157 41.5 1.7e-10 1 No_clan
Cotton_A_00645_CDS 1 109 1 111 PF13519.6 VWA_2 Domain 2 105 107 89.1 2.6e-25 1 CL0128
Cotton_A_00645_CDS 215 228 215 228 PF02809.20 UIM Motif 3 16 17 10.2 0.57 1 No_clan
Cotton_A_00645_CDS 272 285 272 285 PF02809.20 UIM Motif 1 14 17 9.4 1 1 No_clan
Cotton_A_00645_CDS 304 319 303 319 PF02809.20 UIM Motif 2 17 17 16.4 0.0063 1 No_clan
Cotton_A_22046_CDS 23 68 20 77 PF00170.21 bZIP_1 Family 5 50 64 38.0 1.3e-09 1 CL0018
Cotton_A_13498_CDS 28 72 10 72 PF05922.16 Inhibitor_I9 Domain 38 82 82 35.3 1.4e-08 1 CL0570
Cotton_A_13498_CDS 93 541 92 541 PF00082.22 Peptidase_S8 Domain 2 298 298 158.9 1.7e-46 1 No_clan
Cotton_A_13498_CDS 596 691 596 692 PF17766.1 fn3_6 Domain 1 98 99 87.8 4.2e-25 1 CL0159
Cotton_A_00882_CDS 39 152 37 153 PF07732.15 Cu-oxidase_3 Domain 3 118 119 140.4 2.5e-41 1 CL0026
Cotton_A_00882_CDS 166 312 163 313 PF00394.22 Cu-oxidase Domain 4 157 159 145.4 1.5e-42 1 CL0026
Cotton_A_00882_CDS 413 546 412 547 PF07731.14 Cu-oxidase_2 Domain 2 136 137 132.3 9e-39 1 CL0026
Cotton_A_27857_CDS 5 222 4 222 PF07808.13 RED_N Family 1 235 235 267.8 7.8e-80 1 No_clan
Cotton_A_12447_CDS 76 302 76 303 PF07859.13 Abhydrolase_3 Domain 1 210 211 162.3 1.3e-47 1 CL0028
Cotton_A_25769_CDS 72 237 71 240 PF00270.29 DEAD Domain 2 173 176 129.4 1.2e-37 1 CL0023
Cotton_A_25769_CDS 277 384 275 384 PF00271.31 Helicase_C Family 3 111 111 96.1 1.5e-27 1 CL0023
Cotton_A_04397_CDS 101 332 100 333 PF00931.22 NB-ARC Domain 2 251 252 153.5 5.7e-45 1 CL0023
Cotton_A_04397_CDS 501 558 500 561 PF13855.6 LRR_8 Repeat 2 59 61 37.7 1.3e-09 1 CL0022
Cotton_A_02683_CDS 73 109 73 112 PF12023.8 DUF3511 Family 1 37 45 80.4 6.1e-23 1 No_clan
Cotton_A_12415_CDS 288 354 288 354 PF03478.18 DUF295 Domain 1 55 55 66.1 1.5e-18 1 No_clan
Cotton_A_27244_CDS 537 618 531 618 PF04433.17 SWIRM Domain 7 89 89 46.0 4.8e-12 1 CL0123
Cotton_A_27244_CDS 797 881 796 882 PF01593.24 Amino_oxidase Domain 2 73 452 65.4 6e-18 1 CL0063
Cotton_A_30168_CDS 6 162 2 162 PF01397.21 Terpene_synth Domain 27 192 192 186.3 4.7e-55 1 No_clan
Cotton_A_30168_CDS 193 458 193 458 PF03936.16 Terpene_synth_C Domain 1 267 267 356.1 1.1e-106 1 CL0613
Cotton_A_16261_CDS 471 533 468 534 PF00076.22 RRM_1 Domain 7 69 70 29.3 5.6e-07 1 CL0221
Cotton_A_40218_CDS 42 199 42 199 PF04043.15 PMEI Domain 1 154 154 132.8 1.3e-38 1 No_clan
Cotton_A_13922_CDS 28 124 28 124 PF13966.6 zf-RVT Domain 1 85 85 35.1 1.6e-08 1 No_clan
Cotton_A_13922_CDS 226 345 226 348 PF13456.6 RVT_3 Domain 1 121 124 87.1 7.8e-25 1 CL0219
Cotton_A_13129_CDS 15 59 10 70 PF00067.22 p450 Domain 401 447 463 36.3 2.6e-09 1 No_clan
Cotton_A_21907_CDS 71 569 70 569 PF00443.29 UCH Family 2 257 257 150.5 5.7e-44 1 CL0125
Cotton_A_24181_CDS 26 103 5 103 PF02519.14 Auxin_inducible Family 17 90 90 96.4 8e-28 1 No_clan
Cotton_A_35379_CDS 3 147 1 147 PF03936.16 Terpene_synth_C Domain 115 267 267 136.1 1.4e-39 1 CL0613
Cotton_A_34248_CDS 30 186 30 188 PF01652.18 IF4E Domain 1 157 159 179.0 5.7e-53 1 CL0625
Cotton_A_00107_CDS 4 136 4 136 PF02966.16 DIM1 Domain 1 133 133 225.1 1.9e-67 1 CL0172
Cotton_A_11185_CDS 1 128 1 128 PF01092.19 Ribosomal_S6e Family 1 125 125 190.8 7e-57 1 No_clan
Cotton_A_22041_CDS 32 279 31 296 PF16913.5 PUNUT Family 2 252 322 311.8 5.3e-93 1 CL0184
Cotton_A_34613_CDS 18 251 14 263 PF00139.19 Lectin_legB Domain 3 236 249 168.9 1.4e-49 1 CL0004
Cotton_A_34613_CDS 357 510 357 516 PF00069.25 Pkinase Domain 1 147 264 98.0 5.5e-28 1 CL0016
Cotton_A_03863_CDS 10 51 10 52 PF08879.10 WRC Domain 1 42 43 63.8 8.3e-18 1 No_clan
Cotton_A_03863_CDS 853 957 849 957 PF02373.22 JmjC Domain 14 114 114 47.4 2.2e-12 1 CL0029
Cotton_A_10341_CDS 10 227 9 263 PF00069.25 Pkinase Domain 2 212 264 95.2 4.2e-27 1 CL0016
Cotton_A_23113_CDS 14 102 12 128 PF01412.18 ArfGap Domain 3 91 117 118.1 2e-34 1 No_clan
Cotton_A_23887_CDS 30 134 29 134 PF13947.6 GUB_WAK_bind Domain 2 106 106 87.9 6.5e-25 1 No_clan
Cotton_A_23887_CDS 294 329 293 333 PF07645.15 EGF_CA Domain 2 38 42 27.8 2.2e-06 1 CL0001
Cotton_A_02548_CDS 157 576 155 580 PF00854.21 PTR2 Family 3 391 395 300.2 2e-89 1 CL0015
Cotton_A_33590_CDS 63 522 38 525 PF00939.19 Na_sulph_symp Family 29 469 472 207.4 4.3e-61 1 CL0182
Cotton_A_00303_CDS 59 109 58 109 PF00249.31 Myb_DNA-binding Domain 2 46 46 32.8 5.9e-08 1 CL0123
Cotton_A_40408_CDS 27 489 26 489 PF00083.24 Sugar_tr Family 2 452 452 455.7 1.7e-136 1 CL0015
Cotton_A_17128_CDS 20 276 19 282 PF00494.19 SQS_PSY Domain 2 257 263 181.0 3e-53 1 CL0613
Cotton_A_36119_CDS 129 188 128 188 PF13855.6 LRR_8 Repeat 2 61 61 31.6 1e-07 1 CL0022
Cotton_A_36119_CDS 374 575 371 626 PF00069.25 Pkinase Domain 4 200 264 98.1 5.3e-28 1 CL0016
Cotton_A_25586_CDS 24 88 24 165 PF09805.9 Nop25 Family 1 65 137 50.6 2.7e-13 1 No_clan
Cotton_A_36289_CDS 9 44 3 48 PF12776.7 Myb_DNA-bind_3 Domain 57 92 96 26.6 8.9e-06 1 CL0123
Cotton_A_33904_CDS 47 419 46 425 PF01494.19 FAD_binding_3 Family 3 342 349 241.9 1.2e-71 1 CL0063
Cotton_A_17826_CDS 215 261 215 261 PF12906.7 RINGv Domain 1 48 48 48.4 7.3e-13 1 CL0229
Cotton_A_04210_CDS 48 114 29 122 PF00686.19 CBM_20 Family 19 86 97 24.3 2.1e-05 1 CL0369
Cotton_A_04210_CDS 340 556 337 556 PF01591.18 6PF2K Domain 4 223 223 279.5 1.5e-83 1 CL0023
Cotton_A_04210_CDS 559 737 559 748 PF00300.22 His_Phos_1 Domain 1 182 194 127.7 4.4e-37 1 CL0071
Cotton_A_35931_CDS 124 204 108 222 PF03004.14 Transposase_24 Family 23 104 142 50.4 2.4e-13 1 No_clan
Cotton_A_13116_CDS 10 34 9 35 PF13912.6 zf-C2H2_6 Domain 2 26 27 26.9 3.5e-06 1 CL0361
Cotton_A_16894_CDS 6 193 1 193 PF00931.22 NB-ARC Domain 17 206 252 109.3 1.7e-31 1 CL0023
Cotton_A_29532_CDS 13 358 12 373 PF02458.15 Transferase Family 2 348 434 196.7 5.5e-58 1 CL0149
Cotton_A_29532_CDS 378 515 377 517 PF02458.15 Transferase Family 2 136 434 71.3 5.8e-20 1 CL0149
Cotton_A_13571_CDS 39 581 29 585 PF01602.20 Adaptin_N Family 11 520 524 285.6 6.6e-85 1 CL0020
Cotton_A_14454_CDS 61 256 61 256 PF00314.17 Thaumatin Domain 1 214 214 214.5 1.3e-63 1 CL0293
Cotton_A_16595_CDS 1 75 1 76 PF09598.10 Stm1_N Family 1 64 65 69.4 3.5e-19 1 No_clan
Cotton_A_16595_CDS 149 247 141 247 PF04774.15 HABP4_PAI-RBP1 Family 13 116 116 69.1 5.6e-19 1 No_clan
Cotton_A_35338_CDS 5 89 1 92 PF07172.11 GRP Family 3 89 95 61.8 7.7e-17 1 No_clan
Cotton_A_24193_CDS 175 313 174 314 PF00892.20 EamA Family 2 136 137 51.8 8.9e-14 1 CL0184
Cotton_A_03655_CDS 171 207 171 211 PF00514.23 Arm Repeat 1 37 41 23.2 5e-05 1 CL0020
Cotton_A_06468_CDS 25 69 21 88 PF09279.11 EF-hand_like Domain 9 54 86 26.2 8.1e-06 1 CL0220
Cotton_A_06468_CDS 104 246 104 247 PF00388.19 PI-PLC-X Family 1 144 145 165.5 5.4e-49 1 CL0384
Cotton_A_06468_CDS 345 431 338 431 PF00387.19 PI-PLC-Y Family 28 115 115 99.4 1.6e-28 1 CL0384
Cotton_A_06468_CDS 490 552 444 560 PF00168.30 C2 Domain 32 94 103 35.8 7.4e-09 1 CL0154
Cotton_A_29459_CDS 27 66 26 67 PF08263.12 LRRNT_2 Family 2 40 41 39.6 4.6e-10 1 No_clan
Cotton_A_29459_CDS 115 175 115 175 PF13855.6 LRR_8 Repeat 1 61 61 27.2 2.5e-06 1 CL0022
Cotton_A_29459_CDS 393 663 391 666 PF00069.25 Pkinase Domain 3 260 264 155.0 2.3e-45 1 CL0016
Cotton_A_36290_CDS 9 78 7 81 PF10382.9 DUF2439 Family 3 73 81 59.1 3.9e-16 1 No_clan
Cotton_A_11668_CDS 15 533 12 535 PF01602.20 Adaptin_N Family 4 522 524 535.1 1.7e-160 1 CL0020
Cotton_A_11668_CDS 685 780 680 781 PF02883.20 Alpha_adaptinC2 Domain 9 110 111 32.0 1.2e-07 1 CL0159
Cotton_A_11668_CDS 791 900 791 900 PF09066.10 B2-adapt-app_C Domain 1 112 112 102.3 1.5e-29 1 CL0545
Cotton_A_29162_CDS 199 529 199 530 PF01501.20 Glyco_transf_8 Family 1 255 256 252.3 5.1e-75 1 CL0110
Cotton_A_12505_CDS 33 342 32 343 PF00657.22 Lipase_GDSL Family 2 199 200 45.7 7e-12 1 CL0264
Cotton_A_27696_CDS 27 70 26 71 PF00401.20 ATP-synt_DE Domain 2 46 47 29.9 4.9e-07 1 No_clan
Cotton_A_27229_CDS 817 990 817 990 PF14309.6 DUF4378 Family 1 165 165 94.3 9.8e-27 1 No_clan
Cotton_A_18649_CDS 523 643 501 669 PF15996.5 PNISR Family 94 192 202 31.6 1.9e-07 1 No_clan
Cotton_A_05070_CDS 49 142 49 152 PF05938.11 Self-incomp_S1 Family 1 94 104 84.1 8.8e-24 1 No_clan
Cotton_A_06789_CDS 182 328 181 328 PF03031.18 NIF Family 2 156 156 133.3 6.1e-39 1 CL0137
Cotton_A_01430_CDS 109 400 109 400 PF00069.25 Pkinase Domain 1 264 264 229.2 5.5e-68 1 CL0016
Cotton_A_37417_CDS 69 121 49 155 PF14226.6 DIOX_N Family 20 72 118 30.5 5.1e-07 1 CL0029
Cotton_A_36661_CDS 33 65 31 65 PF06376.12 AGP Family 1 36 36 66.7 1.1e-18 1 No_clan
Cotton_A_09425_CDS 89 500 89 500 PF01603.20 B56 Family 1 415 415 641.8 4.6e-193 1 CL0020
Cotton_A_37012_CDS 14 113 3 113 PF00125.24 Histone Domain 32 131 131 77.4 1.2e-21 1 CL0012
Cotton_A_37012_CDS 114 143 114 144 PF16211.5 Histone_H2A_C Family 1 31 35 42.3 4.3e-11 1 No_clan
Cotton_A_09577_CDS 17 318 17 318 PF07993.12 NAD_binding_4 Family 1 257 257 267.7 8e-80 1 CL0063
Cotton_A_09577_CDS 397 491 392 491 PF03015.19 Sterile Family 6 92 93 62.8 2.6e-17 1 No_clan
Cotton_A_08280_CDS 61 191 46 193 PF08524.11 rRNA_processing Domain 16 146 148 51.3 1.2e-13 1 No_clan
Cotton_A_20662_CDS 317 468 316 468 PF04280.15 Tim44 Domain 2 147 147 157.4 2.6e-46 1 CL0051
Cotton_A_33549_CDS 38 142 38 147 PF14226.6 DIOX_N Family 1 116 118 91.6 5.5e-26 1 CL0029
Cotton_A_33549_CDS 190 288 188 288 PF03171.20 2OG-FeII_Oxy Domain 3 101 101 105.7 1.5e-30 1 CL0029
Cotton_A_19620_CDS 35 162 34 163 PF08240.12 ADH_N Domain 2 108 109 83.2 1e-23 1 CL0296
Cotton_A_19620_CDS 205 334 205 340 PF00107.26 ADH_zinc_N Family 1 124 130 88.6 3.2e-25 1 CL0063
Cotton_A_03545_CDS 1259 1354 1141 1355 PF10513.9 EPL1 Family 77 156 157 41.0 2.5e-10 1 No_clan
Cotton_A_08739_CDS 181 245 179 247 PF00575.23 S1 Domain 3 73 75 31.9 1.2e-07 1 CL0021
Cotton_A_08739_CDS 258 328 256 328 PF00575.23 S1 Domain 3 75 75 75.8 2.5e-21 1 CL0021
Cotton_A_25630_CDS 24 132 16 132 PF04520.13 Senescence_reg Family 65 168 168 132.8 2.1e-38 1 No_clan
Cotton_A_22241_CDS 13 125 13 125 PF01277.17 Oleosin Family 1 113 113 169.4 1.8e-50 1 No_clan
Cotton_A_07411_CDS 28 173 28 180 PF06884.11 DUF1264 Family 1 149 171 225.3 3.5e-67 1 No_clan
Cotton_A_22132_CDS 46 276 46 276 PF00230.20 MIP Family 1 227 227 276.3 2e-82 1 No_clan
Cotton_A_24939_CDS 1 125 1 126 PF07207.11 Lir1 Family 1 133 134 143.9 3.4e-42 1 No_clan
Cotton_A_32859_CDS 80 176 57 179 PF03004.14 Transposase_24 Family 25 128 142 55.7 5.4e-15 1 No_clan
Cotton_A_02958_CDS 16 91 16 92 PF08701.11 GN3L_Grn1 Family 1 75 76 62.9 2.2e-17 1 No_clan
Cotton_A_02958_CDS 259 335 258 371 PF01926.23 MMR_HSR1 Family 2 77 114 53.0 3.2e-14 1 CL0023
Cotton_A_13492_CDS 21 65 3 98 PF07714.17 Pkinase_Tyr Domain 160 205 259 24.8 1.2e-05 1 CL0016
Cotton_A_22346_CDS 100 274 93 289 PF17177.4 PPR_long Domain 8 190 212 38.8 6.2e-10 1 CL0020
Cotton_A_04430_CDS 88 175 87 175 PF03101.15 FAR1 Domain 2 90 90 107.9 3.1e-31 1 CL0274
Cotton_A_05948_CDS 33 62 16 63 PF00400.32 WD40 Repeat 12 37 38 15.7 0.021 1 CL0186
Cotton_A_18555_CDS 57 429 56 429 PF00022.19 Actin Family 2 407 407 493.3 4.2e-148 1 CL0108
Cotton_A_06536_CDS 53 345 52 346 PF02535.22 Zip Family 2 332 333 169.1 1.5e-49 1 CL0184
Cotton_A_10650_CDS 154 273 140 274 PF01370.21 Epimerase Family 106 240 241 34.5 1.4e-08 1 CL0063
Cotton_A_21705_CDS 60 133 60 133 PF02201.18 SWIB Domain 1 74 74 107.9 1.7e-31 1 No_clan
Cotton_A_29495_CDS 9 32 8 33 PF13912.6 zf-C2H2_6 Domain 2 25 27 20.5 0.00036 1 CL0361
Cotton_A_29495_CDS 100 123 100 124 PF13912.6 zf-C2H2_6 Domain 3 26 27 31.0 1.8e-07 1 CL0361
Cotton_A_29495_CDS 413 435 413 437 PF13912.6 zf-C2H2_6 Domain 2 24 27 31.3 1.4e-07 1 CL0361
Cotton_A_32412_CDS 18 136 17 226 PF17683.1 TFIIF_beta_N Family 2 104 135 32.4 1.3e-07 1 CL0662
Cotton_A_32412_CDS 187 250 186 250 PF02270.15 TFIIF_beta Domain 2 65 65 72.4 2.4e-20 1 CL0123
Cotton_A_24735_CDS 57 195 55 198 PF04043.15 PMEI Domain 3 151 154 44.3 2.3e-11 1 No_clan
Cotton_A_28384_CDS 10 57 10 57 PF00319.18 SRF-TF Domain 1 48 48 83.3 5.8e-24 1 No_clan
Cotton_A_28384_CDS 82 166 73 169 PF01486.17 K-box Family 6 90 93 77.8 5.3e-22 1 No_clan
Cotton_A_03523_CDS 30 347 29 347 PF00332.18 Glyco_hydro_17 Domain 2 313 313 272.7 5.1e-81 1 CL0058
Cotton_A_36568_CDS 78 167 78 181 PF02727.16 Cu_amine_oxidN2 Domain 1 69 87 24.3 2.8e-05 1 CL0047
Cotton_A_36568_CDS 203 306 203 307 PF02728.16 Cu_amine_oxidN3 Domain 1 100 101 107.6 3.4e-31 1 CL0047
Cotton_A_36568_CDS 333 630 332 632 PF01179.20 Cu_amine_oxid Domain 2 293 410 345.9 3e-103 1 CL0103
Cotton_A_08417_CDS 92 604 92 604 PF03141.16 Methyltransf_29 Family 1 506 506 752.7 1.6e-226 1 CL0063
Cotton_A_13852_CDS 21 122 21 140 PF00067.22 p450 Domain 1 103 463 25.1 6.8e-06 1 No_clan
Cotton_A_13852_CDS 197 453 152 469 PF00067.22 p450 Domain 197 442 463 178.6 1.8e-52 1 No_clan
Cotton_A_03424_CDS 80 195 80 196 PF01820.21 Dala_Dala_lig_N Family 1 102 103 75.1 5.1e-21 1 CL0483
Cotton_A_03424_CDS 238 453 214 454 PF07478.13 Dala_Dala_lig_C Family 25 203 204 58.2 7.6e-16 1 CL0179
Cotton_A_03424_CDS 494 666 494 667 PF01820.21 Dala_Dala_lig_N Family 1 102 103 64.5 9.7e-18 1 CL0483
Cotton_A_03424_CDS 811 924 794 935 PF07478.13 Dala_Dala_lig_C Family 76 183 204 40.2 2.5e-10 1 CL0179
Cotton_A_15529_CDS 1 67 1 69 PF00817.20 IMS Family 3 73 150 67.0 1.7e-18 1 No_clan
Cotton_A_15529_CDS 67 127 62 129 PF00817.20 IMS Family 87 148 150 55.2 7.4e-15 1 No_clan
Cotton_A_06089_CDS 8 382 4 386 PF02458.15 Transferase Family 5 386 434 169.4 1.1e-49 1 CL0149
Cotton_A_24273_CDS 122 383 122 383 PF00069.25 Pkinase Domain 1 264 264 246.2 3.4e-73 1 CL0016
Cotton_A_24273_CDS 404 441 404 441 PF00433.24 Pkinase_C Family 1 46 46 26.8 6.4e-06 1 No_clan
Cotton_A_40234_CDS 30 152 28 152 PF04852.12 DUF640 Family 3 126 126 222.0 1.8e-66 1 No_clan
Cotton_A_14228_CDS 14 76 13 76 PF11721.8 Malectin Domain 101 165 165 51.1 1.5e-13 1 CL0202
Cotton_A_14228_CDS 158 240 155 247 PF07714.17 Pkinase_Tyr Domain 4 92 259 64.3 1e-17 1 CL0016
Cotton_A_19447_CDS 30 123 30 125 PF14363.6 AAA_assoc Family 1 94 96 84.0 7.1e-24 1 No_clan
Cotton_A_19447_CDS 249 396 248 397 PF00004.29 AAA Domain 2 131 132 58.0 1.3e-15 1 CL0023
Cotton_A_29309_CDS 76 191 57 192 PF00134.23 Cyclin_N Domain 25 126 127 31.9 9.3e-08 1 CL0065
Cotton_A_29309_CDS 196 289 195 306 PF16899.5 Cyclin_C_2 Domain 2 84 104 28.3 1.8e-06 1 CL0065
Cotton_A_25325_CDS 74 341 72 343 PF00069.25 Pkinase Domain 3 260 264 174.3 3.1e-51 1 CL0016
Cotton_A_29277_CDS 25 178 24 181 PF14299.6 PP2 Family 2 143 146 85.0 4.9e-24 1 No_clan
Cotton_A_15672_CDS 98 216 97 218 PF02893.20 GRAM Domain 2 111 114 78.5 3.3e-22 1 CL0266
Cotton_A_10207_CDS 73 124 72 126 PF00628.29 PHD Domain 2 50 52 29.7 4.3e-07 1 CL0390
Cotton_A_10207_CDS 264 316 263 356 PF01429.19 MBD Domain 2 58 77 33.3 2.9e-08 1 CL0081
Cotton_A_10207_CDS 666 698 651 702 PF05965.14 FYRC Family 51 80 84 22.2 0.00012 1 No_clan
Cotton_A_10207_CDS 1180 1234 1141 1235 PF00439.25 Bromodomain Domain 30 83 84 23.9 3.3e-05 1 No_clan
Cotton_A_10207_CDS 1291 1338 1291 1339 PF00628.29 PHD Domain 1 51 52 44.6 9.7e-12 1 CL0390
Cotton_A_10207_CDS 1370 1414 1369 1414 PF15612.6 WHIM1 Family 2 46 46 44.9 5.4e-12 1 No_clan
Cotton_A_01582_CDS 90 221 89 222 PF05142.12 DUF702 Family 2 149 150 204.3 1.2e-60 1 No_clan
Cotton_A_24742_CDS 60 159 60 177 PF14226.6 DIOX_N Family 1 98 118 64.4 1.5e-17 1 CL0029
Cotton_A_24742_CDS 219 310 211 311 PF03171.20 2OG-FeII_Oxy Domain 8 100 101 79.5 2.1e-22 1 CL0029
Cotton_A_00995_CDS 27 97 16 123 PF12505.8 DUF3712 Family 16 85 125 21.8 0.00018 1 No_clan
Cotton_A_19063_CDS 14 82 14 83 PF00076.22 RRM_1 Domain 1 69 70 48.9 4.1e-13 1 CL0221
Cotton_A_19063_CDS 155 250 150 250 PF14111.6 DUF4283 Domain 6 109 145 27.6 1.8e-06 1 No_clan
Cotton_A_29613_CDS 725 766 723 766 PF13639.6 zf-RING_2 Domain 3 44 44 41.7 1.1e-10 1 CL0229
Cotton_A_05507_CDS 101 191 101 191 PF13837.6 Myb_DNA-bind_4 Domain 1 90 90 73.6 1.3e-20 1 CL0123
Cotton_A_05507_CDS 244 453 243 453 PF00696.28 AA_kinase Family 2 241 241 86.3 2.4e-24 1 No_clan
Cotton_A_24942_CDS 2 59 1 108 PF18052.1 Rx_N Domain 30 87 93 52.0 6.4e-14 1 No_clan
Cotton_A_24942_CDS 95 125 82 125 PF03124.14 EXS Family 301 331 331 29.5 4.5e-07 1 CL0182
Cotton_A_14800_CDS 93 187 93 187 PF00338.22 Ribosomal_S10 Family 1 98 98 112.8 6.9e-33 1 No_clan
Cotton_A_07201_CDS 110 294 110 300 PF14249.6 Tocopherol_cycl Family 1 172 337 208.9 1.1e-61 1 No_clan
Cotton_A_07201_CDS 313 409 305 420 PF14249.6 Tocopherol_cycl Family 171 263 337 138.0 3.8e-40 1 No_clan
Cotton_A_29383_CDS 5 325 4 326 PF16913.5 PUNUT Family 2 321 322 404.3 3.5e-121 1 CL0184
Cotton_A_06035_CDS 150 173 150 175 PF01535.20 PPR Family 1 24 31 11.5 0.29 1 CL0020
Cotton_A_06035_CDS 183 231 183 233 PF13041.6 PPR_2 Repeat 1 48 50 36.9 3.1e-09 1 CL0020
Cotton_A_06035_CDS 258 285 257 287 PF01535.20 PPR Family 2 29 31 23.7 3.8e-05 1 CL0020
Cotton_A_06035_CDS 328 363 327 366 PF13041.6 PPR_2 Repeat 5 40 50 31.6 1.3e-07 1 CL0020
Cotton_A_06035_CDS 368 391 367 395 PF01535.20 PPR Family 2 25 31 17.5 0.0036 1 CL0020
Cotton_A_06035_CDS 404 449 403 449 PF13041.6 PPR_2 Repeat 2 47 50 36.7 3.5e-09 1 CL0020
Cotton_A_06035_CDS 512 539 511 541 PF01535.20 PPR Family 2 29 31 13.6 0.059 1 CL0020
Cotton_A_30594_CDS 14 78 13 78 PF00226.31 DnaJ Domain 2 63 63 74.0 7.6e-21 1 CL0392
Cotton_A_30594_CDS 385 533 385 533 PF11875.8 DUF3395 Family 1 157 157 157.9 1.8e-46 1 No_clan
Cotton_A_23468_CDS 43 221 41 254 PF09741.9 DUF2045 Family 3 170 233 177.8 2.2e-52 1 No_clan
Cotton_A_26504_CDS 30 295 30 295 PF04674.12 Phi_1 Family 1 276 276 403.7 3.5e-121 1 No_clan
Cotton_A_13743_CDS 280 337 280 337 PF04844.13 Ovate Family 1 58 58 87.4 4.5e-25 1 No_clan
Cotton_A_05227_CDS 17 106 7 134 PF05879.12 RHD3 Family 639 715 743 79.7 1.4e-22 1 CL0023
Cotton_A_27239_CDS 319 403 319 404 PF00439.25 Bromodomain Domain 1 83 84 71.6 4.2e-20 1 No_clan
Cotton_A_27239_CDS 497 558 496 559 PF17035.5 BET Domain 2 63 64 83.5 8.8e-24 1 CL0665
Cotton_A_16591_CDS 165 309 164 320 PF00160.21 Pro_isomerase Domain 2 147 158 41.1 2.1e-10 1 CL0475
Cotton_A_19190_CDS 168 209 167 209 PF03790.13 KNOX1 Family 2 43 43 62.7 1.9e-17 1 No_clan
Cotton_A_19190_CDS 226 276 225 276 PF03791.13 KNOX2 Family 2 48 48 75.0 2.4e-21 1 No_clan
Cotton_A_19190_CDS 334 355 334 355 PF03789.13 ELK Domain 1 22 22 28.4 1.2e-06 1 No_clan
Cotton_A_19190_CDS 374 413 374 413 PF05920.11 Homeobox_KN Family 1 40 40 63.2 1.5e-17 1 CL0123
Cotton_A_06123_CDS 30 164 27 165 PF08718.11 GLTP Domain 4 148 149 101.9 3.9e-29 1 No_clan
Cotton_A_13313_CDS 26 116 25 122 PF00085.20 Thioredoxin Domain 2 90 103 77.3 7.4e-22 1 CL0172
Cotton_A_18704_CDS 17 195 4 207 PF05786.14 Cnd2 Family 180 366 766 66.5 2e-18 1 No_clan
Cotton_A_18704_CDS 207 316 191 322 PF05786.14 Cnd2 Family 430 533 766 60.4 1.4e-16 1 No_clan
Cotton_A_26275_CDS 153 206 153 206 PF11250.8 FAF Family 1 54 54 77.8 5.4e-22 1 No_clan
Cotton_A_33926_CDS 1 23 1 48 PF05514.11 HR_lesion Family 1 23 138 29.0 1e-06 1 CL0131
Cotton_A_33926_CDS 61 175 54 175 PF05514.11 HR_lesion Family 24 138 138 152.7 6.7e-45 1 CL0131
Cotton_A_12041_CDS 318 448 278 450 PF00481.21 PP2C Family 66 191 258 73.8 1.7e-20 1 CL0238
Cotton_A_15969_CDS 56 304 52 304 PF00069.25 Pkinase Domain 5 264 264 188.4 1.6e-55 1 CL0016
Cotton_A_15969_CDS 367 468 367 470 PF14593.6 PH_3 Family 1 99 104 98.3 2.3e-28 1 CL0266
Cotton_A_00612_CDS 13 114 5 115 PF02519.14 Auxin_inducible Family 2 89 90 71.7 4.3e-20 1 No_clan
Cotton_A_19721_CDS 29 164 29 164 PF13339.6 AATF-Che1 Family 1 139 139 110.2 1.2e-31 1 No_clan
Cotton_A_19721_CDS 243 318 243 318 PF08164.12 TRAUB Domain 1 85 85 74.0 1e-20 1 No_clan
Cotton_A_20014_CDS 144 188 143 191 PF13920.6 zf-C3HC4_3 Domain 2 47 50 36.0 4.6e-09 1 CL0229
Cotton_A_15523_CDS 29 284 27 284 PF00069.25 Pkinase Domain 4 264 264 177.3 3.6e-52 1 CL0016
Cotton_A_24214_CDS 65 214 64 214 PF00190.22 Cupin_1 Domain 2 151 151 170.4 1.8e-50 1 CL0029
Cotton_A_18271_CDS 268 579 268 580 PF01501.20 Glyco_transf_8 Family 1 255 256 316.8 1.1e-94 1 CL0110
Cotton_A_21700_CDS 75 155 70 165 PF00085.20 Thioredoxin Domain 7 90 103 30.7 2.4e-07 1 CL0172
Cotton_A_08066_CDS 149 178 149 178 PF13181.6 TPR_8 Repeat 1 30 34 15.9 0.011 1 CL0020
Cotton_A_08066_CDS 280 329 279 337 PF13432.6 TPR_16 Family 3 54 68 18.4 0.0026 1 CL0020
Cotton_A_08066_CDS 363 396 363 396 PF13181.6 TPR_8 Repeat 1 34 34 22.0 0.00012 1 CL0020
Cotton_A_08066_CDS 564 625 561 628 PF13424.6 TPR_12 Repeat 4 73 77 33.9 2.8e-08 1 CL0020
Cotton_A_16617_CDS 122 248 120 249 PF01529.20 DHHC Family 3 133 134 129.5 8.5e-38 1 No_clan
Cotton_A_35267_CDS 58 248 57 251 PF01975.17 SurE Family 2 191 195 154.1 3.8e-45 1 No_clan
Cotton_A_32759_CDS 34 98 33 149 PF08240.12 ADH_N Domain 2 64 109 34.8 1.2e-08 1 CL0296
Cotton_A_32759_CDS 198 327 198 327 PF13602.6 ADH_zinc_N_2 Domain 1 133 133 70.8 2.2e-19 1 CL0063
Cotton_A_17350_CDS 44 123 26 124 PF01704.18 UDPGP Family 52 121 413 25.9 3.6e-06 1 CL0110
Cotton_A_28939_CDS 18 536 17 537 PF05327.11 RRN3 Family 2 557 558 424.3 7.1e-127 1 No_clan
Cotton_A_17759_CDS 93 269 84 269 PF00544.19 Pec_lyase_C Domain 37 211 211 89.5 2.2e-25 1 CL0268
Cotton_A_32122_CDS 91 188 70 188 PF00861.22 Ribosomal_L18p Family 23 116 116 42.1 9.3e-11 1 CL0267
Cotton_A_04960_CDS 11 94 11 95 PF10235.9 Cript Family 1 88 89 112.7 9.3e-33 1 No_clan
Cotton_A_21824_CDS 68 409 66 409 PF05147.13 LANC_like Family 3 352 352 309.2 2.4e-92 1 CL0059
Cotton_A_28763_CDS 16 162 16 184 PF14215.6 bHLH-MYC_N Family 1 137 175 117.5 7.6e-34 1 CL0161
Cotton_A_28763_CDS 399 446 397 446 PF00010.26 HLH Domain 3 53 53 50.0 2.2e-13 1 No_clan
Cotton_A_19405_CDS 60 219 58 219 PF04833.15 COBRA Family 3 165 165 208.0 7.8e-62 1 No_clan
Cotton_A_34530_CDS 16 109 15 111 PF01657.17 Stress-antifung Family 2 93 95 51.1 1.6e-13 1 No_clan
Cotton_A_34530_CDS 139 217 125 219 PF01657.17 Stress-antifung Family 13 93 95 42.0 1.1e-10 1 No_clan
Cotton_A_02520_CDS 97 370 97 375 PF07887.11 Calmodulin_bind Family 1 273 292 409.0 1.1e-122 1 No_clan
Cotton_A_19681_CDS 168 636 162 640 PF00324.21 AA_permease Family 20 473 479 211.7 1.6e-62 1 CL0062
Cotton_A_19681_CDS 658 779 657 784 PF03522.15 SLC12 Family 2 119 429 48.5 6.5e-13 1 No_clan
Cotton_A_19681_CDS 790 987 785 988 PF03522.15 SLC12 Family 241 428 429 82.8 2.6e-23 1 No_clan
Cotton_A_03055_CDS 36 219 16 219 PF00443.29 UCH Family 130 257 257 79.8 2.1e-22 1 CL0125
Cotton_A_18250_CDS 3 215 3 216 PF00091.25 Tubulin Domain 1 196 197 234.6 1.1e-69 1 CL0566
Cotton_A_18250_CDS 265 386 265 387 PF03953.17 Tubulin_C Domain 1 125 126 136.7 4.5e-40 1 CL0442
Cotton_A_20472_CDS 34 70 32 71 PF08263.12 LRRNT_2 Family 3 40 41 45.9 5.2e-12 1 No_clan
Cotton_A_20472_CDS 148 188 148 195 PF12799.7 LRR_4 Repeat 1 39 44 27.3 3.4e-06 1 CL0022
Cotton_A_20472_CDS 245 304 244 304 PF13855.6 LRR_8 Repeat 2 61 61 38.4 7.4e-10 1 CL0022
Cotton_A_20472_CDS 340 400 340 400 PF13855.6 LRR_8 Repeat 1 61 61 27.5 1.9e-06 1 CL0022
Cotton_A_20472_CDS 485 543 483 543 PF13855.6 LRR_8 Repeat 3 61 61 35.2 7.9e-09 1 CL0022
Cotton_A_20472_CDS 712 950 702 953 PF00069.25 Pkinase Domain 22 259 264 91.5 5.7e-26 1 CL0016
Cotton_A_20357_CDS 268 365 267 368 PF00855.17 PWWP Domain 2 93 96 47.5 1.8e-12 1 CL0049
Cotton_A_20357_CDS 462 515 462 516 PF00628.29 PHD Domain 1 51 52 35.9 4.9e-09 1 CL0390
Cotton_A_20357_CDS 670 704 669 704 PF13831.6 PHD_2 Family 2 36 36 44.1 1.1e-11 1 CL0390
Cotton_A_20357_CDS 711 823 710 823 PF13832.6 zf-HC5HC2H_2 Domain 2 110 110 91.4 3.9e-26 1 CL0390
Cotton_A_20357_CDS 953 1058 953 1059 PF00856.28 SET Family 1 168 169 66.7 3.2e-18 1 No_clan
Cotton_A_08548_CDS 16 100 7 100 PF02519.14 Auxin_inducible Family 2 90 90 68.7 3.6e-19 1 No_clan
Cotton_A_27456_CDS 61 408 61 408 PF00266.19 Aminotran_5 Domain 1 371 371 190.1 5.6e-56 1 CL0061
Cotton_A_34011_CDS 12 51 10 52 PF05879.12 RHD3 Family 154 193 743 33.6 1.2e-08 1 CL0023
Cotton_A_34011_CDS 119 236 117 238 PF05879.12 RHD3 Family 362 480 743 85.0 3.5e-24 1 CL0023
Cotton_A_34011_CDS 237 284 236 293 PF05879.12 RHD3 Family 522 569 743 31.1 6.9e-08 1 CL0023
Cotton_A_01827_CDS 21 68 21 68 PF00249.31 Myb_DNA-binding Domain 1 46 46 46.5 3e-12 1 CL0123
Cotton_A_01827_CDS 74 117 74 119 PF00249.31 Myb_DNA-binding Domain 1 44 46 47.6 1.4e-12 1 CL0123
Cotton_A_36862_CDS 47 207 46 209 PF03087.14 DUF241 Family 2 168 234 171.3 3e-50 1 CL0133
Cotton_A_15410_CDS 491 555 490 561 PF00575.23 S1 Domain 2 67 75 34.4 2e-08 1 CL0021
Cotton_A_15410_CDS 580 649 577 650 PF00575.23 S1 Domain 4 74 75 35.0 1.3e-08 1 CL0021
Cotton_A_15410_CDS 756 826 753 826 PF00575.23 S1 Domain 4 75 75 24.6 2.4e-05 1 CL0021
Cotton_A_15410_CDS 1458 1530 1456 1530 PF00575.23 S1 Domain 3 75 75 57.9 9.4e-16 1 CL0021
Cotton_A_15410_CDS 1828 1923 1817 1926 PF05843.14 Suf Family 41 137 296 38.3 1.5e-09 1 CL0020
Cotton_A_34492_CDS 31 201 31 201 PF01397.21 Terpene_synth Domain 1 192 192 205.1 8.1e-61 1 No_clan
Cotton_A_34492_CDS 232 497 232 497 PF03936.16 Terpene_synth_C Domain 1 267 267 350.1 7.5e-105 1 CL0613
Cotton_A_14540_CDS 16 449 16 449 PF02127.15 Peptidase_M18 Family 1 432 432 553.6 2.9e-166 1 CL0035
Cotton_A_04587_CDS 117 194 113 194 PF04433.17 SWIRM Domain 6 89 89 51.8 7.5e-14 1 CL0123
Cotton_A_04587_CDS 223 651 223 651 PF01593.24 Amino_oxidase Domain 1 452 452 305.7 7.5e-91 1 CL0063
Cotton_A_07608_CDS 30 242 30 242 PF00314.17 Thaumatin Domain 1 214 214 273.0 1.6e-81 1 CL0293
Cotton_A_24360_CDS 173 212 166 213 PF00010.26 HLH Domain 10 52 53 29.0 7.8e-07 1 No_clan
Cotton_A_13930_CDS 51 76 50 76 PF00642.24 zf-CCCH Family 2 27 27 33.6 2.5e-08 1 CL0537
Cotton_A_13930_CDS 96 121 95 121 PF00642.24 zf-CCCH Family 2 27 27 40.2 2.2e-10 1 CL0537
Cotton_A_13930_CDS 142 167 141 167 PF00642.24 zf-CCCH Family 2 27 27 37.8 1.2e-09 1 CL0537
Cotton_A_13930_CDS 299 324 298 324 PF00642.24 zf-CCCH Family 2 27 27 36.2 4e-09 1 CL0537
Cotton_A_13930_CDS 345 369 344 370 PF00642.24 zf-CCCH Family 2 26 27 34.9 9.6e-09 1 CL0537
Cotton_A_12753_CDS 76 177 75 177 PF00085.20 Thioredoxin Domain 2 103 103 106.5 5.8e-31 1 CL0172
Cotton_A_19952_CDS 55 466 55 466 PF01603.20 B56 Family 1 415 415 629.5 2.6e-189 1 CL0020
Cotton_A_19483_CDS 61 204 61 204 PF00258.25 Flavodoxin_1 Domain 1 143 143 117.4 5.7e-34 1 CL0042
Cotton_A_19483_CDS 278 499 275 499 PF00667.20 FAD_binding_1 Domain 4 222 222 254.8 6.3e-76 1 CL0076
Cotton_A_19483_CDS 536 646 536 647 PF00175.21 NAD_binding_1 Domain 1 108 109 57.4 2e-15 1 CL0091
Cotton_A_07746_CDS 8 117 2 118 PF02469.22 Fasciclin Domain 18 127 128 44.8 1.3e-11 1 No_clan
Cotton_A_33587_CDS 36 115 36 117 PF16845.5 SQAPI Domain 1 81 83 126.1 5e-37 1 CL0121
Cotton_A_01868_CDS 92 414 91 415 PF00155.21 Aminotran_1_2 Domain 2 362 363 179.1 1.4e-52 1 CL0061
Cotton_A_36795_CDS 57 174 57 175 PF13537.6 GATase_7 Domain 1 122 123 132.6 6.6e-39 1 CL0052
Cotton_A_36795_CDS 219 370 218 372 PF00733.21 Asn_synthase Domain 2 144 355 196.6 9.2e-58 1 CL0039
Cotton_A_22904_CDS 13 50 11 54 PF08879.10 WRC Domain 3 40 43 41.6 7.3e-11 1 No_clan
Cotton_A_24386_CDS 102 140 96 142 PF00025.21 Arf Domain 24 62 175 29.3 5e-07 1 CL0023
Cotton_A_06399_CDS 33 275 33 276 PF03345.14 DDOST_48kD Family 1 260 415 180.8 4e-53 1 No_clan
Cotton_A_06399_CDS 276 351 276 353 PF03345.14 DDOST_48kD Family 286 365 415 86.1 2.2e-24 1 No_clan
Cotton_A_06399_CDS 351 411 347 418 PF03345.14 DDOST_48kD Family 330 394 415 62.2 4e-17 1 No_clan
Cotton_A_23838_CDS 3 57 1 57 PF14111.6 DUF4283 Domain 91 145 145 35.7 5.6e-09 1 No_clan
Cotton_A_23394_CDS 29 116 23 119 PF00651.31 BTB Domain 10 97 111 22.7 8.7e-05 1 CL0033
Cotton_A_23394_CDS 215 480 215 480 PF03000.14 NPH3 Family 1 258 258 306.1 2.1e-91 1 No_clan
Cotton_A_30185_CDS 41 77 40 78 PF08263.12 LRRNT_2 Family 2 40 41 38.5 1e-09 1 No_clan
Cotton_A_30185_CDS 298 339 292 339 PF13855.6 LRR_8 Repeat 21 61 61 28.3 1.1e-06 1 CL0022
Cotton_A_30185_CDS 357 397 356 401 PF12799.7 LRR_4 Repeat 2 40 44 28.3 1.7e-06 1 CL0022
Cotton_A_30185_CDS 651 669 648 669 PF00560.33 LRR_1 Repeat 5 23 23 9.6 1.6 1 CL0022
Cotton_A_30185_CDS 670 730 670 730 PF13855.6 LRR_8 Repeat 1 61 61 27.9 1.5e-06 1 CL0022
Cotton_A_30185_CDS 743 765 743 765 PF00560.33 LRR_1 Repeat 1 23 23 12.4 0.19 1 CL0022
Cotton_A_30185_CDS 798 857 797 857 PF13855.6 LRR_8 Repeat 2 61 61 32.5 5.4e-08 1 CL0022
Cotton_A_15603_CDS 45 84 44 84 PF08263.12 LRRNT_2 Family 2 41 41 43.8 2.4e-11 1 No_clan
Cotton_A_15603_CDS 140 197 136 197 PF13855.6 LRR_8 Repeat 5 61 61 30.3 2.6e-07 1 CL0022
Cotton_A_15603_CDS 234 256 234 280 PF00560.33 LRR_1 Repeat 1 23 23 10.5 0.77 1 CL0022
Cotton_A_15603_CDS 708 915 705 973 PF00069.25 Pkinase Domain 4 206 264 141.3 3.5e-41 1 CL0016
Cotton_A_06539_CDS 5 101 2 106 PF01426.18 BAH Domain 18 114 122 31.5 1.3e-07 1 No_clan
Cotton_A_06539_CDS 208 282 207 282 PF05641.12 Agenet Domain 2 61 61 66.3 2.5e-18 1 CL0049
Cotton_A_07963_CDS 24 57 21 57 PF13713.6 BRX_N Domain 4 37 37 60.2 1.2e-16 1 No_clan
Cotton_A_07963_CDS 141 195 140 195 PF08381.11 BRX Domain 2 56 56 95.0 1.2e-27 1 No_clan
Cotton_A_07963_CDS 286 341 286 341 PF08381.11 BRX Domain 1 56 56 95.1 1.1e-27 1 No_clan
Cotton_A_01142_CDS 4 43 2 46 PF00643.24 zf-B_box Domain 4 37 42 28.4 1.3e-06 1 No_clan
Cotton_A_01142_CDS 46 91 44 91 PF00643.24 zf-B_box Domain 3 42 42 27.9 1.9e-06 1 No_clan
Cotton_A_01142_CDS 272 314 272 315 PF06203.14 CCT Motif 1 43 44 62.7 2.4e-17 1 CL0281
Cotton_A_30492_CDS 1 65 1 68 PF02969.17 TAF Domain 1 65 66 103.6 4.6e-30 1 CL0012
Cotton_A_30492_CDS 261 348 261 349 PF07571.13 TAF6_C Family 1 89 90 112.5 8.8e-33 1 CL0020
Cotton_A_05288_CDS 90 687 90 687 PF00888.22 Cullin Family 1 618 618 690.1 2.9e-207 1 No_clan
Cotton_A_05288_CDS 718 778 718 778 PF10557.9 Cullin_Nedd8 Domain 1 63 63 81.3 3.8e-23 1 CL0123
Cotton_A_36693_CDS 22 111 7 113 PF02171.17 Piwi Family 211 300 302 100.5 1e-28 1 CL0219
Cotton_A_03620_CDS 104 172 104 172 PF00076.22 RRM_1 Domain 1 70 70 62.3 2.8e-17 1 CL0221
Cotton_A_08328_CDS 146 258 145 258 PF14288.6 FKS1_dom1 Family 2 129 129 128.1 2.4e-37 1 No_clan
Cotton_A_08328_CDS 827 1074 826 1078 PF02364.15 Glucan_synthase Family 2 287 819 224.5 2.4e-66 1 CL0111
Cotton_A_08328_CDS 1081 1222 1075 1237 PF02364.15 Glucan_synthase Family 536 684 819 57.9 5.6e-16 1 CL0111
Cotton_A_15697_CDS 71 166 51 169 PF02309.16 AUX_IAA Family 120 229 237 112.9 2.1e-32 1 CL0072
Cotton_A_25752_CDS 40 350 39 353 PF16913.5 PUNUT Family 2 318 322 312.0 4.6e-93 1 CL0184
Cotton_A_17855_CDS 5 168 2 174 PF05701.11 WEMBL Family 393 557 562 45.9 3.3e-12 1 No_clan
Cotton_A_14373_CDS 121 170 120 171 PF00847.20 AP2 Domain 2 53 54 52.1 5.7e-14 1 CL0081
Cotton_A_27774_CDS 21 91 20 95 PF13417.6 GST_N_3 Domain 2 71 75 62.7 3.1e-17 1 CL0172
Cotton_A_27774_CDS 132 203 103 207 PF00043.25 GST_C Domain 21 88 93 37.1 2.8e-09 1 CL0497
Cotton_A_34522_CDS 15 113 14 115 PF00307.31 CH Domain 2 107 109 44.4 1.5e-11 1 CL0188
Cotton_A_32105_CDS 67 473 14 474 PF00083.24 Sugar_tr Family 43 450 452 303.7 2.2e-90 1 CL0015
Cotton_A_07843_CDS 19 154 19 157 PF00179.26 UQ_con Domain 1 136 140 131.9 1.2e-38 1 CL0208
Cotton_A_26970_CDS 66 124 66 126 PF00226.31 DnaJ Domain 1 60 63 63.9 1.1e-17 1 CL0392
Cotton_A_26970_CDS 447 653 445 654 PF11926.8 DUF3444 Family 4 211 212 245.2 5.3e-73 1 No_clan
Cotton_A_26223_CDS 171 196 169 198 PF01535.20 PPR Family 3 28 31 14.4 0.035 1 CL0020
Cotton_A_26223_CDS 293 353 293 355 PF13812.6 PPR_3 Repeat 1 61 63 50.4 1.7e-13 1 CL0020
Cotton_A_26223_CDS 354 507 353 525 PF17177.4 PPR_long Domain 23 185 212 56.4 2.6e-15 1 CL0020
Cotton_A_06504_CDS 82 322 81 322 PF06999.12 Suc_Fer-like Family 2 195 195 136.6 9.4e-40 1 No_clan
Cotton_A_35097_CDS 21 70 19 76 PF00076.22 RRM_1 Domain 3 55 70 34.9 9.6e-09 1 CL0221
Cotton_A_35097_CDS 116 176 114 180 PF00076.22 RRM_1 Domain 3 65 70 22.1 9.9e-05 1 CL0221
Cotton_A_35097_CDS 242 320 235 322 PF11835.8 RRM_8 Domain 10 87 89 29.5 6.4e-07 1 CL0221
Cotton_A_35245_CDS 84 123 84 124 PF13414.6 TPR_11 Repeat 1 40 42 29.4 4.7e-07 1 CL0020
Cotton_A_35245_CDS 187 692 186 693 PF12569.8 NARP1 Family 2 514 515 639.3 5.3e-192 1 CL0020
Cotton_A_41153_CDS 127 156 127 159 PF13041.6 PPR_2 Repeat 1 30 50 33.8 2.8e-08 1 CL0020
Cotton_A_41153_CDS 162 186 162 189 PF01535.20 PPR Family 1 25 31 14.8 0.024 1 CL0020
Cotton_A_41153_CDS 195 224 195 225 PF01535.20 PPR Family 1 30 31 28.5 1.1e-06 1 CL0020
Cotton_A_41153_CDS 227 254 226 256 PF01535.20 PPR Family 2 29 31 29.4 5.6e-07 1 CL0020
Cotton_A_41153_CDS 255 302 254 303 PF13041.6 PPR_2 Repeat 2 49 50 49.5 3.4e-13 1 CL0020
Cotton_A_41153_CDS 329 353 327 355 PF01535.20 PPR Family 3 27 31 12.7 0.11 1 CL0020
Cotton_A_41153_CDS 356 403 355 404 PF13041.6 PPR_2 Repeat 2 49 50 37.6 1.8e-09 1 CL0020
Cotton_A_41153_CDS 430 453 428 456 PF01535.20 PPR Family 3 26 31 17.9 0.0026 1 CL0020
Cotton_A_23154_CDS 55 458 53 458 PF03901.17 Glyco_transf_22 Family 2 417 417 343.3 2.4e-102 1 CL0111
Cotton_A_36365_CDS 82 449 73 450 PF07517.14 SecA_DEAD Domain 13 289 290 391.5 2.2e-117 1 CL0023
Cotton_A_36365_CDS 302 406 298 406 PF01043.20 SecA_PP_bind Domain 5 111 111 92.7 2.2e-26 1 No_clan
Cotton_A_34400_CDS 2 179 1 197 PF00955.21 HCO3_cotransp Family 2 173 508 128.2 4.1e-37 1 CL0062
Cotton_A_34400_CDS 202 372 183 377 PF00955.21 HCO3_cotransp Family 246 411 508 88.4 4.5e-25 1 CL0062
Cotton_A_34400_CDS 460 550 453 551 PF00955.21 HCO3_cotransp Family 423 507 508 64.5 8.3e-18 1 CL0062
Cotton_A_20157_CDS 88 224 88 227 PF00781.24 DAGK_cat Family 1 123 126 96.4 9.1e-28 1 CL0240
Cotton_A_20157_CDS 279 456 279 456 PF00609.19 DAGK_acc Family 1 160 160 143.4 7.3e-42 1 No_clan
Cotton_A_37798_CDS 74 211 73 211 PF16486.5 ArgoN Domain 2 138 138 108.5 4e-31 1 No_clan
Cotton_A_37798_CDS 222 271 221 271 PF08699.10 ArgoL1 Domain 2 52 52 69.1 1.8e-19 1 No_clan
Cotton_A_37798_CDS 290 399 278 403 PF02170.22 PAZ Domain 13 133 137 76.0 2.4e-21 1 CL0638
Cotton_A_37798_CDS 412 456 410 456 PF16488.5 ArgoL2 Family 6 47 47 30.0 5e-07 1 No_clan
Cotton_A_37798_CDS 467 544 466 545 PF16487.5 ArgoMid Domain 2 83 84 36.0 6.1e-09 1 No_clan
Cotton_A_37798_CDS 581 842 578 844 PF02171.17 Piwi Family 58 300 302 284.5 9.4e-85 1 CL0219
Cotton_A_25577_CDS 28 87 27 91 PF08240.12 ADH_N Domain 2 61 109 31.5 1.2e-07 1 CL0296
Cotton_A_25577_CDS 151 265 151 280 PF00107.26 ADH_zinc_N Family 1 115 130 109.7 9.8e-32 1 CL0063
Cotton_A_22815_CDS 10 26 10 26 PF00098.23 zf-CCHC Domain 2 18 18 28.9 7.6e-07 1 CL0511
Cotton_A_22815_CDS 49 64 48 65 PF00098.23 zf-CCHC Domain 2 17 18 34.0 1.8e-08 1 CL0511
Cotton_A_22815_CDS 103 184 103 186 PF07962.12 Swi3 Family 1 81 83 75.4 2.7e-21 1 No_clan
Cotton_A_27007_CDS 1 53 1 63 PF00282.19 Pyridoxal_deC Domain 59 110 375 42.5 3.3e-11 1 CL0061
Cotton_A_27007_CDS 83 166 66 167 PF00282.19 Pyridoxal_deC Domain 178 261 375 94.8 4.4e-27 1 CL0061
Cotton_A_15256_CDS 7 66 6 66 PF03931.15 Skp1_POZ Domain 2 63 63 59.6 2.5e-16 1 CL0033
Cotton_A_15256_CDS 108 154 107 154 PF01466.19 Skp1 Domain 2 48 48 91.4 2.8e-26 1 No_clan
Cotton_A_22758_CDS 76 387 76 387 PF03006.20 HlyIII Family 1 224 224 235.7 5.2e-70 1 CL0192
Cotton_A_25550_CDS 60 504 59 504 PF11744.8 ALMT Family 2 469 469 546.8 4.1e-164 1 CL0307
Cotton_A_23258_CDS 8 105 6 106 PF17773.1 UPF0176_N Domain 3 91 92 50.3 2.3e-13 1 CL0622
Cotton_A_23258_CDS 252 316 252 317 PF12368.8 Rhodanese_C Family 1 63 64 54.6 1e-14 1 No_clan
Cotton_A_23258_CDS 366 598 363 599 PF03959.13 FSH1 Domain 3 211 212 161.8 1.7e-47 1 CL0028
Cotton_A_28493_CDS 73 328 73 330 PF01501.20 Glyco_transf_8 Family 1 254 256 188.9 1.1e-55 1 CL0110
Cotton_A_08471_CDS 45 101 43 102 PF13637.6 Ank_4 Repeat 3 54 55 32.9 6.6e-08 1 CL0465
Cotton_A_08471_CDS 479 590 479 592 PF13962.6 PGG Domain 1 114 116 87.0 7.4e-25 1 No_clan
Cotton_A_32361_CDS 84 217 81 219 PF01565.23 FAD_binding_4 Domain 4 136 139 85.5 2.6e-24 1 CL0077
Cotton_A_32361_CDS 471 528 471 528 PF08031.12 BBE Domain 1 46 46 57.3 1.2e-15 1 CL0277
Cotton_A_08327_CDS 17 199 16 199 PF07466.11 DUF1517 Family 2 184 184 198.5 1e-58 1 No_clan
Cotton_A_13066_CDS 184 210 183 211 PF01535.20 PPR Family 2 28 31 10.0 0.86 1 CL0020
Cotton_A_13066_CDS 217 247 217 247 PF01535.20 PPR Family 1 31 31 15.9 0.011 1 CL0020
Cotton_A_13066_CDS 256 280 254 282 PF01535.20 PPR Family 5 29 31 19.5 0.00082 1 CL0020
Cotton_A_13066_CDS 289 332 286 334 PF13041.6 PPR_2 Repeat 5 48 50 34.8 1.3e-08 1 CL0020
Cotton_A_13066_CDS 351 397 351 399 PF13041.6 PPR_2 Repeat 1 47 50 34.4 1.8e-08 1 CL0020
Cotton_A_12462_CDS 93 162 59 162 PF02225.22 PA Family 28 89 89 33.8 2.6e-08 1 CL0364
Cotton_A_19919_CDS 4 69 4 69 PF08156.13 NOP5NT Domain 1 65 65 64.1 1.1e-17 1 No_clan
Cotton_A_19919_CDS 177 409 177 410 PF01798.18 Nop Family 1 229 230 292.5 1.9e-87 1 No_clan
Cotton_A_36320_CDS 58 520 54 531 PF00067.22 p450 Domain 7 450 463 240.2 3.8e-71 1 No_clan
Cotton_A_28984_CDS 69 306 69 306 PF08704.10 GCD14 Family 1 247 247 330.2 8.5e-99 1 CL0063
Cotton_A_10479_CDS 55 258 54 325 PF00149.28 Metallophos Domain 2 153 204 30.7 4.2e-07 1 CL0163
Cotton_A_26138_CDS 61 144 61 149 PF18036.1 Ubiquitin_4 Domain 1 84 89 92.1 1.7e-26 1 CL0072
Cotton_A_00221_CDS 44 333 44 333 PF08392.12 FAE1_CUT1_RppA Family 1 290 290 466.0 4.5e-140 1 CL0046
Cotton_A_00221_CDS 350 429 347 430 PF08541.10 ACP_syn_III_C Domain 12 88 90 43.9 2.1e-11 1 CL0046
Cotton_A_34643_CDS 3 42 3 42 PF01779.17 Ribosomal_L29e Family 1 40 40 83.2 1.1e-23 1 No_clan
Cotton_A_16155_CDS 169 198 168 198 PF01535.20 PPR Family 2 31 31 20.8 0.00031 1 CL0020
Cotton_A_16155_CDS 206 233 205 233 PF01535.20 PPR Family 4 31 31 19.0 0.0011 1 CL0020
Cotton_A_16155_CDS 260 319 258 320 PF13812.6 PPR_3 Repeat 3 62 63 24.6 1.9e-05 1 CL0020
Cotton_A_16155_CDS 341 389 340 389 PF13041.6 PPR_2 Repeat 2 50 50 54.5 9.9e-15 1 CL0020
Cotton_A_16155_CDS 416 443 413 443 PF01535.20 PPR Family 4 31 31 11.8 0.23 1 CL0020
Cotton_A_16155_CDS 447 476 447 477 PF01535.20 PPR Family 1 30 31 23.2 5.2e-05 1 CL0020
Cotton_A_16155_CDS 479 526 479 528 PF13041.6 PPR_2 Repeat 1 48 50 57.1 1.5e-15 1 CL0020
Cotton_A_16155_CDS 552 575 552 582 PF01535.20 PPR Family 1 24 31 11.7 0.24 1 CL0020
Cotton_A_16155_CDS 587 633 585 633 PF13041.6 PPR_2 Repeat 4 50 50 64.7 6.2e-18 1 CL0020
Cotton_A_16155_CDS 655 701 654 703 PF13041.6 PPR_2 Repeat 2 48 50 41.9 8.5e-11 1 CL0020
Cotton_A_16155_CDS 725 773 724 773 PF13041.6 PPR_2 Repeat 2 50 50 54.1 1.3e-14 1 CL0020
Cotton_A_16155_CDS 794 840 794 843 PF13041.6 PPR_2 Repeat 1 47 50 48.0 1.1e-12 1 CL0020
Cotton_A_24089_CDS 193 275 191 284 PF12796.7 Ank_2 Repeat 2 73 83 52.7 4.8e-14 1 CL0465
Cotton_A_24089_CDS 330 378 327 379 PF13857.6 Ank_5 Repeat 9 55 56 31.6 1.4e-07 1 CL0465
Cotton_A_27496_CDS 18 56 16 56 PF08263.12 LRRNT_2 Family 4 41 41 47.4 1.7e-12 1 No_clan
Cotton_A_27496_CDS 333 531 330 543 PF00069.25 Pkinase Domain 5 198 264 104.1 7.6e-30 1 CL0016
Cotton_A_34615_CDS 21 124 16 125 PF16457.5 PH_12 Domain 8 133 134 28.9 1.4e-06 1 CL0266
Cotton_A_34615_CDS 300 348 299 348 PF00415.18 RCC1 Repeat 2 50 50 34.0 3.3e-08 1 CL0186
Cotton_A_34615_CDS 352 403 351 403 PF00415.18 RCC1 Repeat 2 50 50 38.2 1.6e-09 1 CL0186
Cotton_A_34615_CDS 407 455 406 455 PF00415.18 RCC1 Repeat 2 50 50 51.0 1.7e-13 1 CL0186
Cotton_A_34615_CDS 469 516 469 518 PF00415.18 RCC1 Repeat 1 48 50 44.4 1.9e-11 1 CL0186
Cotton_A_34615_CDS 521 570 521 570 PF00415.18 RCC1 Repeat 1 50 50 27.0 5.3e-06 1 CL0186
Cotton_A_34615_CDS 575 622 574 622 PF00415.18 RCC1 Repeat 3 50 50 51.1 1.5e-13 1 CL0186
Cotton_A_34615_CDS 626 692 625 693 PF01363.21 FYVE Domain 2 67 68 52.0 5.7e-14 1 CL0390
Cotton_A_34615_CDS 875 910 875 911 PF13713.6 BRX_N Domain 1 36 37 72.8 1.3e-20 1 No_clan
Cotton_A_34615_CDS 1032 1087 1032 1087 PF08381.11 BRX Domain 1 56 56 99.7 4e-29 1 No_clan
Cotton_A_31065_CDS 409 508 409 514 PF00168.30 C2 Domain 1 97 103 43.7 2.6e-11 1 CL0154
Cotton_A_02558_CDS 7 265 7 265 PF04078.13 Rcd1 Family 1 259 259 436.0 4e-131 1 No_clan
Cotton_A_05192_CDS 99 387 95 389 PF03151.16 TPT Family 6 287 290 50.7 1.6e-13 1 CL0184
Cotton_A_08794_CDS 2 49 1 55 PF14111.6 DUF4283 Domain 45 92 145 41.5 8.7e-11 1 No_clan
Cotton_A_01592_CDS 33 319 32 319 PF00069.25 Pkinase Domain 2 264 264 233.2 3.4e-69 1 CL0016
Cotton_A_39278_CDS 78 122 76 123 PF00249.31 Myb_DNA-binding Domain 3 45 46 47.3 1.7e-12 1 CL0123
Cotton_A_11682_CDS 34 188 34 189 PF02518.26 HATPase_c Domain 1 111 112 53.9 2.2e-14 1 CL0025
Cotton_A_11682_CDS 191 700 191 705 PF00183.18 HSP90 Family 1 513 517 790.4 8.4e-238 1 No_clan
Cotton_A_23603_CDS 39 89 39 90 PF00847.20 AP2 Domain 1 53 54 51.6 8.2e-14 1 CL0081
Cotton_A_13915_CDS 77 174 76 178 PF03168.13 LEA_2 Domain 2 95 101 40.7 2.6e-10 1 CL0159
Cotton_A_15955_CDS 49 72 46 76 PF01535.20 PPR Family 4 27 31 15.2 0.019 1 CL0020
Cotton_A_15955_CDS 77 104 77 107 PF01535.20 PPR Family 1 28 31 20.1 0.00051 1 CL0020
Cotton_A_15955_CDS 106 153 105 154 PF13041.6 PPR_2 Repeat 2 49 50 37.9 1.5e-09 1 CL0020
Cotton_A_15955_CDS 180 206 178 208 PF01535.20 PPR Family 3 29 31 13.8 0.052 1 CL0020
Cotton_A_15955_CDS 210 239 209 239 PF01535.20 PPR Family 2 31 31 21.1 0.00025 1 CL0020
Cotton_A_15955_CDS 240 268 240 270 PF01535.20 PPR Family 1 29 31 17.8 0.0029 1 CL0020
Cotton_A_15955_CDS 340 370 333 372 PF13812.6 PPR_3 Repeat 12 42 63 17.1 0.0044 1 CL0020
Cotton_A_15955_CDS 373 416 372 419 PF13041.6 PPR_2 Repeat 2 45 50 36.7 3.6e-09 1 CL0020
Cotton_A_15955_CDS 475 521 474 523 PF13041.6 PPR_2 Repeat 2 48 50 33.5 3.5e-08 1 CL0020
Cotton_A_15955_CDS 550 573 548 576 PF01535.20 PPR Family 3 26 31 11.5 0.28 1 CL0020
Cotton_A_15955_CDS 615 644 614 644 PF01535.20 PPR Family 2 31 31 14.9 0.024 1 CL0020
Cotton_A_15955_CDS 649 772 648 772 PF14432.6 DYW_deaminase Family 2 127 127 137.4 2.3e-40 1 CL0109
Cotton_A_02447_CDS 1 93 1 106 PF04571.14 Lipin_N Family 1 90 102 102.9 7.8e-30 1 No_clan
Cotton_A_02447_CDS 477 585 477 587 PF16876.5 Lipin_mid Family 1 99 101 61.1 8.8e-17 1 No_clan
Cotton_A_02447_CDS 637 859 635 859 PF08235.13 LNS2 Domain 3 226 226 322.2 1.6e-96 1 CL0137
Cotton_A_14157_CDS 30 264 30 266 PF03731.15 Ku_N Domain 1 218 220 204.2 2.1e-60 1 CL0128
Cotton_A_14157_CDS 273 475 273 476 PF02735.16 Ku Domain 1 203 204 139.0 1.6e-40 1 CL0616
Cotton_A_14157_CDS 493 568 488 579 PF03730.14 Ku_C Family 6 83 88 52.0 8.7e-14 1 No_clan
Cotton_A_14157_CDS 591 624 591 625 PF02037.27 SAP Family 1 34 35 33.7 2.2e-08 1 CL0306
Cotton_A_01640_CDS 49 314 12 315 PF05055.12 DUF677 Family 58 335 336 182.5 9.4e-54 1 CL0133
Cotton_A_26188_CDS 22 83 22 84 PF00076.22 RRM_1 Domain 1 69 70 55.6 3.5e-15 1 CL0221
Cotton_A_26188_CDS 112 127 111 128 PF00098.23 zf-CCHC Domain 2 17 18 27.5 2.1e-06 1 CL0511
Cotton_A_26188_CDS 133 149 133 150 PF00098.23 zf-CCHC Domain 1 17 18 25.4 1e-05 1 CL0511
Cotton_A_12935_CDS 144 190 143 191 PF13920.6 zf-C3HC4_3 Domain 2 49 50 35.2 8.4e-09 1 CL0229
Cotton_A_15869_CDS 160 218 160 222 PF03478.18 DUF295 Domain 1 50 55 52.5 2.7e-14 1 No_clan
Cotton_A_16607_CDS 171 250 171 250 PF08545.10 ACP_syn_III Domain 1 80 80 99.7 6.2e-29 1 CL0046
Cotton_A_16607_CDS 311 400 311 400 PF08541.10 ACP_syn_III_C Domain 1 90 90 125.5 6.8e-37 1 CL0046
Cotton_A_14112_CDS 150 224 150 233 PF12796.7 Ank_2 Repeat 1 63 83 37.9 2.1e-09 1 CL0465
Cotton_A_38955_CDS 45 173 43 173 PF05479.11 PsaN Family 3 132 132 225.6 1.7e-67 1 No_clan
Cotton_A_31916_CDS 23 80 21 82 PF00170.21 bZIP_1 Family 5 62 64 42.3 5.8e-11 1 CL0018
Cotton_A_00868_CDS 71 377 62 378 PF03492.15 Methyltransf_7 Family 10 333 334 340.8 8.2e-102 1 CL0063
Cotton_A_00868_CDS 447 754 436 754 PF03492.15 Methyltransf_7 Family 10 334 334 290.9 1.3e-86 1 CL0063
Cotton_A_20599_CDS 1 97 1 98 PF08704.10 GCD14 Family 34 130 247 125.5 2.8e-36 1 CL0063
Cotton_A_12005_CDS 151 247 151 257 PF02362.21 B3 Family 1 85 101 83.4 8.1e-24 1 CL0405
Cotton_A_25173_CDS 35 205 34 205 PF03637.17 Mob1_phocein Family 2 169 169 272.2 1.7e-81 1 No_clan
Cotton_A_02374_CDS 105 119 103 120 PF07145.15 PAM2 Motif 3 17 18 21.4 0.00013 1 No_clan
Cotton_A_02374_CDS 179 243 179 246 PF00076.22 RRM_1 Domain 1 67 70 42.4 4.6e-11 1 CL0221
Cotton_A_02374_CDS 276 343 276 344 PF00076.22 RRM_1 Domain 1 69 70 33.0 3.8e-08 1 CL0221
Cotton_A_41329_CDS 32 119 32 119 PF00450.22 Peptidase_S10 Domain 1 83 419 84.9 7.2e-24 1 CL0028
Cotton_A_41329_CDS 156 346 154 349 PF00450.22 Peptidase_S10 Domain 184 395 419 88.6 5.6e-25 1 CL0028
Cotton_A_41329_CDS 382 505 381 510 PF00450.22 Peptidase_S10 Domain 84 207 419 117.6 8.8e-34 1 CL0028
Cotton_A_24283_CDS 144 501 143 501 PF03514.14 GRAS Family 2 374 374 165.4 1.8e-48 1 CL0063
Cotton_A_05407_CDS 10 88 10 119 PF14226.6 DIOX_N Family 1 76 118 40.8 3.2e-10 1 CL0029
Cotton_A_05407_CDS 155 263 146 264 PF03171.20 2OG-FeII_Oxy Domain 9 100 101 67.0 1.6e-18 1 CL0029
Cotton_A_20403_CDS 40 386 40 388 PF13968.6 DUF4220 Family 1 346 347 285.7 5.9e-85 1 No_clan
Cotton_A_20403_CDS 603 655 601 655 PF04578.13 DUF594 Family 3 55 55 83.6 5e-24 1 No_clan
Cotton_A_22056_CDS 392 661 388 664 PF00069.25 Pkinase Domain 5 260 264 150.0 8.1e-44 1 CL0016
Cotton_A_12893_CDS 24 258 21 258 PF13561.6 adh_short_C2 Domain 3 234 234 191.3 1.8e-56 1 CL0063
Cotton_A_10718_CDS 8 81 5 98 PF12796.7 Ank_2 Repeat 4 63 83 28.7 1.5e-06 1 CL0465
Cotton_A_19081_CDS 29 94 29 96 PF03810.19 IBN_N Family 1 72 74 25.8 7.2e-06 1 CL0020
Cotton_A_19081_CDS 101 245 101 246 PF08389.12 Xpo1 Family 1 148 149 69.2 4e-19 1 CL0020
Cotton_A_37145_CDS 21 233 21 235 PF06760.11 DUF1221 Family 1 213 215 316.7 6.3e-95 1 No_clan
Cotton_A_37145_CDS 270 499 264 499 PF07714.17 Pkinase_Tyr Domain 49 259 259 137.4 5e-40 1 CL0016
Cotton_A_07178_CDS 57 473 56 482 PF13520.6 AA_permease_2 Family 2 419 425 157.3 5.4e-46 1 CL0062
Cotton_A_07178_CDS 495 543 495 545 PF13906.6 AA_permease_C Domain 1 49 51 39.2 5.5e-10 1 CL0062
Cotton_A_01861_CDS 47 114 46 114 PF00498.26 FHA Family 2 69 69 62.8 2.9e-17 1 CL0357
Cotton_A_29978_CDS 10 57 10 57 PF00319.18 SRF-TF Domain 1 48 48 87.9 2.1e-25 1 No_clan
Cotton_A_29978_CDS 85 159 81 162 PF01486.17 K-box Family 5 79 93 87.3 6e-25 1 No_clan
Cotton_A_35517_CDS 14 131 14 166 PF06094.12 GGACT Family 1 117 121 71.8 7.1e-20 1 CL0278
Cotton_A_39043_CDS 34 127 33 128 PF01657.17 Stress-antifung Family 2 94 95 66.4 2.8e-18 1 No_clan
Cotton_A_39043_CDS 182 237 139 237 PF01657.17 Stress-antifung Family 42 95 95 33.4 5.2e-08 1 No_clan
Cotton_A_16713_CDS 1 424 1 425 PF05695.12 DUF825 Family 171 596 1486 950.8 1.1e-285 1 No_clan
Cotton_A_38041_CDS 157 188 156 188 PF13181.6 TPR_8 Repeat 2 33 34 18.2 0.002 1 CL0020
Cotton_A_02045_CDS 169 247 167 253 PF00439.25 Bromodomain Domain 3 78 84 54.5 8.8e-15 1 No_clan
Cotton_A_02045_CDS 699 821 698 827 PF03004.14 Transposase_24 Family 2 135 142 95.0 4.2e-27 1 No_clan
Cotton_A_12598_CDS 32 198 30 203 PF00141.23 peroxidase Domain 78 224 229 135.2 2.7e-39 1 CL0617
Cotton_A_36315_CDS 34 114 34 114 PF02298.17 Cu_bind_like Domain 1 84 84 98.4 1.8e-28 1 CL0026
Cotton_A_36920_CDS 1 154 1 154 PF00407.19 Bet_v_1 Domain 1 151 151 65.1 6.3e-18 1 CL0209
Cotton_A_21379_CDS 3 74 3 74 PF00240.23 ubiquitin Domain 1 72 72 113.7 2.3e-33 1 CL0072
Cotton_A_21379_CDS 79 150 79 150 PF00240.23 ubiquitin Domain 1 72 72 113.7 2.3e-33 1 CL0072
Cotton_A_21379_CDS 155 226 155 226 PF00240.23 ubiquitin Domain 1 72 72 113.7 2.3e-33 1 CL0072
Cotton_A_21379_CDS 231 265 231 268 PF00240.23 ubiquitin Domain 1 35 72 38.6 6.5e-10 1 CL0072
Cotton_A_09307_CDS 1 45 1 47 PF13812.6 PPR_3 Repeat 6 50 63 38.7 8e-10 1 CL0020
Cotton_A_09307_CDS 69 128 3 150 PF05021.15 NPL4 Family 216 278 308 22.9 4.6e-05 1 CL0366
Cotton_A_34439_CDS 377 669 376 670 PF03715.13 Noc2 Family 2 298 299 315.3 3.8e-94 1 No_clan
Cotton_A_04177_CDS 141 261 138 262 PF00787.24 PX Domain 4 112 113 84.1 6.4e-24 1 No_clan
Cotton_A_04177_CDS 330 562 313 563 PF09325.10 Vps5 Domain 16 235 236 68.0 8.9e-19 1 CL0145
Cotton_A_39019_CDS 95 171 84 197 PF00025.21 Arf Domain 66 146 175 62.3 3.6e-17 1 CL0023
Cotton_A_33760_CDS 7 128 6 129 PF01775.17 Ribosomal_L18A Domain 2 120 121 184.3 7.1e-55 1 No_clan
Cotton_A_13662_CDS 117 230 117 232 PF08241.12 Methyltransf_11 Domain 1 94 96 80.4 1.2e-22 1 CL0063
Cotton_A_39492_CDS 5 129 5 129 PF03952.16 Enolase_N Domain 1 131 131 164.2 1.5e-48 1 CL0227
Cotton_A_39492_CDS 138 429 137 431 PF00113.22 Enolase_C Domain 2 294 296 510.5 1.3e-153 1 CL0256
Cotton_A_14254_CDS 35 611 29 614 PF01602.20 Adaptin_N Family 7 520 524 271.2 1.5e-80 1 CL0020
Cotton_A_10321_CDS 61 440 57 445 PF00999.21 Na_H_Exchanger Family 6 373 381 113.8 8e-33 1 CL0064
Cotton_A_09063_CDS 17 192 17 199 PF00069.25 Pkinase Domain 1 173 264 179.3 9e-53 1 CL0016
Cotton_A_25756_CDS 60 598 60 599 PF02990.16 EMP70 Family 1 518 519 731.1 7e-220 1 No_clan
Cotton_A_10805_CDS 20 152 20 153 PF00168.30 C2 Domain 1 102 103 92.1 2.2e-26 1 CL0154
Cotton_A_10805_CDS 355 389 354 389 PF00614.22 PLDc Family 2 28 28 29.1 7.5e-07 1 CL0479
Cotton_A_10805_CDS 548 730 547 740 PF13091.6 PLDc_2 Domain 2 114 133 31.2 1.7e-07 1 CL0479
Cotton_A_10805_CDS 768 838 768 839 PF12357.8 PLD_C Family 1 71 72 100.5 3.6e-29 1 No_clan
Cotton_A_18042_CDS 43 189 42 189 PF04043.15 PMEI Domain 2 154 154 75.3 6.5e-21 1 No_clan
Cotton_A_18042_CDS 245 542 245 543 PF01095.19 Pectinesterase Family 1 297 298 409.9 3.9e-123 1 CL0268
Cotton_A_13948_CDS 100 122 100 122 PF00096.26 zf-C2H2 Domain 1 23 23 17.1 0.0057 1 CL0361
Cotton_A_15626_CDS 132 303 132 303 PF00929.24 RNase_T Family 1 165 165 92.1 5.6e-26 1 CL0219
Cotton_A_10326_CDS 93 266 92 266 PF00270.29 DEAD Domain 2 176 176 124.3 4.3e-36 1 CL0023
Cotton_A_10326_CDS 311 421 302 421 PF00271.31 Helicase_C Family 9 111 111 84.0 8.9e-24 1 CL0023
Cotton_A_32152_CDS 203 305 203 305 PF08241.12 Methyltransf_11 Domain 1 96 96 67.8 1e-18 1 CL0063
Cotton_A_18530_CDS 88 156 88 157 PF00076.22 RRM_1 Domain 1 69 70 57.4 9.3e-16 1 CL0221
Cotton_A_18530_CDS 183 236 175 241 PF13865.6 FoP_duplication Family 6 63 81 36.1 7.1e-09 1 No_clan
Cotton_A_00819_CDS 126 225 123 226 PF03754.13 DUF313 Family 4 112 113 52.6 4.4e-14 1 CL0405
Cotton_A_18199_CDS 123 159 122 165 PF12799.7 LRR_4 Repeat 2 36 44 28.5 1.4e-06 1 CL0022
Cotton_A_18199_CDS 294 354 294 354 PF13855.6 LRR_8 Repeat 1 61 61 29.4 4.8e-07 1 CL0022
Cotton_A_18199_CDS 367 426 366 426 PF13855.6 LRR_8 Repeat 2 61 61 35.1 8.4e-09 1 CL0022
Cotton_A_18199_CDS 472 615 462 618 PF00069.25 Pkinase Domain 118 260 264 67.1 1.6e-18 1 CL0016
Cotton_A_14677_CDS 84 262 84 263 PF16994.5 Glyco_trans_4_5 Family 1 170 171 213.9 1.1e-63 1 CL0113
Cotton_A_14677_CDS 271 451 268 451 PF00534.20 Glycos_transf_1 Family 5 172 172 70.1 1.6e-19 1 CL0113
Cotton_A_29711_CDS 26 335 25 337 PF00657.22 Lipase_GDSL Family 2 198 200 65.6 5.9e-18 1 CL0264
Cotton_A_24626_CDS 87 481 83 483 PF00202.21 Aminotran_3 Domain 9 404 406 296.2 3e-88 1 CL0061
Cotton_A_33848_CDS 66 192 63 194 PF01529.20 DHHC Family 4 132 134 99.4 1.6e-28 1 No_clan
Cotton_A_14166_CDS 54 310 54 312 PF00685.27 Sulfotransfer_1 Domain 1 265 267 199.4 7.5e-59 1 CL0023
Cotton_A_22407_CDS 157 306 155 306 PF01529.20 DHHC Family 3 134 134 131.3 2.3e-38 1 No_clan
Cotton_A_31944_CDS 40 138 39 139 PF01453.24 B_lectin Domain 2 104 105 97.4 6.2e-28 1 No_clan
Cotton_A_31944_CDS 171 277 171 279 PF00954.20 S_locus_glycop Domain 1 109 111 88.4 4.2e-25 1 No_clan
Cotton_A_31944_CDS 300 370 296 372 PF08276.11 PAN_2 Domain 3 65 67 36.5 4e-09 1 CL0168
Cotton_A_31944_CDS 455 724 454 724 PF07714.17 Pkinase_Tyr Domain 2 259 259 164.5 2.7e-48 1 CL0016
Cotton_A_31944_CDS 726 768 726 768 PF11883.8 DUF3403 Family 1 46 46 30.4 3.1e-07 1 No_clan
Cotton_A_39878_CDS 25 114 25 114 PF00447.17 HSF_DNA-bind Domain 1 96 96 99.7 1.1e-28 1 CL0123
Cotton_A_26565_CDS 88 410 87 410 PF07992.14 Pyr_redox_2 Domain 2 294 294 218.4 1.2e-64 1 CL0063
Cotton_A_26565_CDS 430 538 430 539 PF02852.22 Pyr_redox_dim Domain 1 109 110 115.6 1.3e-33 1 CL0608
Cotton_A_21417_CDS 80 140 79 140 PF00226.31 DnaJ Domain 2 63 63 84.3 4.8e-24 1 CL0392
Cotton_A_17888_CDS 78 330 77 353 PF00899.21 ThiF Domain 2 217 244 141.4 3e-41 1 CL0063
Cotton_A_16848_CDS 18 187 16 187 PF05078.12 DUF679 Family 3 163 163 199.9 2.5e-59 1 No_clan
Cotton_A_05570_CDS 139 258 125 260 PF00782.20 DSPc Domain 17 131 133 57.2 1.5e-15 1 CL0031
Cotton_A_05570_CDS 354 552 354 552 PF01331.19 mRNA_cap_enzyme Domain 1 195 195 255.1 4.3e-76 1 CL0078
Cotton_A_33835_CDS 95 191 93 196 PF10250.9 O-FucT Family 198 282 336 38.0 1.5e-09 1 CL0113
Cotton_A_34178_CDS 1 58 1 58 PF01058.22 Oxidored_q6 Family 70 131 131 59.6 2.6e-16 1 No_clan
Cotton_A_19060_CDS 125 168 124 168 PF13639.6 zf-RING_2 Domain 2 44 44 49.8 3.1e-13 1 CL0229
Cotton_A_14735_CDS 63 141 60 155 PF00651.31 BTB Domain 6 79 111 43.5 3e-11 1 CL0033
Cotton_A_14735_CDS 227 269 227 269 PF11900.8 DUF3420 Repeat 1 47 47 45.1 8.1e-12 1 CL0465
Cotton_A_14804_CDS 128 304 127 304 PF01595.20 DUF21 Domain 2 176 176 149.1 1e-43 1 No_clan
Cotton_A_14804_CDS 319 377 319 378 PF00571.28 CBS Domain 1 56 57 16.9 0.0065 1 No_clan
Cotton_A_14804_CDS 387 442 387 443 PF00571.28 CBS Domain 1 56 57 26.0 9e-06 1 No_clan
Cotton_A_14804_CDS 464 568 463 569 PF03471.17 CorC_HlyC Domain 2 80 81 77.8 4.5e-22 1 No_clan
Cotton_A_40181_CDS 104 242 104 247 PF03031.18 NIF Family 1 133 156 155.3 1e-45 1 CL0137
Cotton_A_38468_CDS 118 235 118 238 PF09335.11 SNARE_assoc Family 1 116 120 70.7 1.5e-19 1 No_clan
Cotton_A_24671_CDS 60 224 52 256 PF00704.28 Glyco_hydro_18 Domain 26 185 312 54.3 1.7e-14 1 CL0058
Cotton_A_26693_CDS 12 38 12 39 PF05678.14 VQ Motif 1 27 28 46.1 2.3e-12 1 No_clan
Cotton_A_02356_CDS 178 335 135 350 PF01852.19 START Domain 48 203 209 34.6 1.2e-08 1 CL0209
Cotton_A_15909_CDS 151 261 121 267 PF12796.7 Ank_2 Repeat 1 77 83 51.3 1.4e-13 1 CL0465
Cotton_A_15909_CDS 277 363 275 368 PF12796.7 Ank_2 Repeat 3 77 83 54.6 1.2e-14 1 CL0465
Cotton_A_15909_CDS 373 404 372 405 PF00023.30 Ank Repeat 2 31 32 19.8 0.00078 1 CL0465
Cotton_A_15909_CDS 486 592 485 592 PF13962.6 PGG Domain 2 116 116 94.4 3.7e-27 1 No_clan
Cotton_A_19365_CDS 91 349 91 354 PF00069.25 Pkinase Domain 1 262 264 226.6 3.3e-67 1 CL0016
Cotton_A_19365_CDS 401 462 382 464 PF13499.6 EF-hand_7 Domain 3 69 71 36.2 6.2e-09 1 CL0220
Cotton_A_19365_CDS 483 535 479 536 PF13499.6 EF-hand_7 Domain 6 70 71 41.0 2e-10 1 CL0220
Cotton_A_02970_CDS 39 128 14 128 PF00583.25 Acetyltransf_1 Family 31 117 117 60.1 2.2e-16 1 CL0257
Cotton_A_33681_CDS 11 73 11 73 PF00226.31 DnaJ Domain 1 63 63 70.0 1.3e-19 1 CL0392
Cotton_A_33681_CDS 88 161 87 164 PF05207.13 zf-CSL Domain 2 56 59 49.1 3.5e-13 1 CL0167
Cotton_A_36984_CDS 25 219 25 221 PF01454.19 MAGE Family 1 207 213 129.2 1.7e-37 1 CL0123
Cotton_A_14508_CDS 13 102 13 102 PF00447.17 HSF_DNA-bind Domain 1 96 96 96.9 7.8e-28 1 CL0123
Cotton_A_35504_CDS 48 107 47 107 PF13855.6 LRR_8 Repeat 2 61 61 28.8 7.5e-07 1 CL0022
Cotton_A_35504_CDS 197 253 194 253 PF13855.6 LRR_8 Repeat 5 61 61 34.5 1.3e-08 1 CL0022
Cotton_A_00234_CDS 3 34 1 46 PF00643.24 zf-B_box Domain 4 35 42 24.9 1.6e-05 1 No_clan
Cotton_A_00234_CDS 52 85 51 95 PF00643.24 zf-B_box Domain 2 35 42 30.8 2.4e-07 1 No_clan
Cotton_A_16612_CDS 79 146 39 150 PF02519.14 Auxin_inducible Family 21 86 90 69.1 2.7e-19 1 No_clan
Cotton_A_07860_CDS 48 370 36 370 PF03492.15 Methyltransf_7 Family 12 334 334 401.5 2.9e-120 1 CL0063
Cotton_A_35487_CDS 69 233 66 236 PF00067.22 p450 Domain 266 430 463 189.8 7.6e-56 1 No_clan
Cotton_A_27413_CDS 13 228 13 228 PF00318.20 Ribosomal_S2 Family 1 215 215 258.0 4.9e-77 1 CL0067
Cotton_A_27413_CDS 289 487 288 488 PF00119.20 ATP-synt_A Domain 2 210 211 169.9 7.2e-50 1 No_clan
Cotton_A_08310_CDS 81 348 80 351 PF01256.17 Carb_kinase Family 2 241 244 160.2 5.8e-47 1 CL0118
Cotton_A_13482_CDS 8 80 8 82 PF04564.15 U-box Domain 1 71 73 70.8 8.2e-20 1 CL0229
Cotton_A_23609_CDS 67 89 67 89 PF02493.20 MORN Repeat 1 23 23 20.8 0.00025 1 CL0251
Cotton_A_23609_CDS 90 111 90 112 PF02493.20 MORN Repeat 1 22 23 28.3 1e-06 1 CL0251
Cotton_A_23609_CDS 113 134 113 135 PF02493.20 MORN Repeat 1 22 23 18.7 0.0011 1 CL0251
Cotton_A_23609_CDS 136 157 136 158 PF02493.20 MORN Repeat 1 22 23 19.5 0.00061 1 CL0251
Cotton_A_23609_CDS 159 179 159 180 PF02493.20 MORN Repeat 1 21 23 23.5 3.2e-05 1 CL0251
Cotton_A_00108_CDS 56 116 56 116 PF00226.31 DnaJ Domain 1 63 63 52.6 3.7e-14 1 CL0392
Cotton_A_00108_CDS 149 203 149 204 PF13370.6 Fer4_13 Domain 1 57 58 40.0 4.2e-10 1 CL0344
Cotton_A_07157_CDS 177 227 176 228 PF00847.20 AP2 Domain 2 53 54 53.6 1.9e-14 1 CL0081
Cotton_A_36276_CDS 88 128 88 129 PF11910.8 NdhO Family 1 37 67 45.1 8.2e-12 1 No_clan
Cotton_A_36276_CDS 284 393 281 394 PF14288.6 FKS1_dom1 Family 18 128 129 60.5 2e-16 1 No_clan
Cotton_A_36276_CDS 650 737 649 743 PF02364.15 Glucan_synthase Family 2 91 819 97.3 6.8e-28 1 CL0111
Cotton_A_36276_CDS 965 1315 964 1397 PF02364.15 Glucan_synthase Family 379 731 819 406.1 3.1e-121 1 CL0111
Cotton_A_36291_CDS 17 58 8 61 PF10382.9 DUF2439 Family 33 75 81 24.9 1.8e-05 1 No_clan
Cotton_A_29619_CDS 82 246 82 246 PF01965.24 DJ-1_PfpI Domain 1 165 165 122.0 2e-35 1 CL0014
Cotton_A_29619_CDS 286 445 285 447 PF01965.24 DJ-1_PfpI Domain 2 163 165 119.9 9e-35 1 CL0014
Cotton_A_08098_CDS 96 148 96 148 PF13637.6 Ank_4 Repeat 2 55 55 51.9 7.6e-14 1 CL0465
Cotton_A_37929_CDS 156 265 155 269 PF00109.26 ketoacyl-synt Domain 2 124 253 57.5 1.5e-15 1 CL0046
Cotton_A_37929_CDS 269 317 266 323 PF00109.26 ketoacyl-synt Domain 163 211 253 47.7 1.5e-12 1 CL0046
Cotton_A_37929_CDS 351 464 351 465 PF02801.22 Ketoacyl-synt_C Domain 1 117 118 113.3 6.5e-33 1 CL0046
Cotton_A_19988_CDS 46 372 46 372 PF00933.21 Glyco_hydro_3 Domain 1 319 319 205.4 1.3e-60 1 CL0058
Cotton_A_19988_CDS 409 618 409 619 PF01915.22 Glyco_hydro_3_C Domain 1 203 204 125.9 2e-36 1 No_clan
Cotton_A_29120_CDS 114 253 114 255 PF02620.17 YceD Family 1 119 121 100.8 5.3e-29 1 No_clan
Cotton_A_19552_CDS 113 286 111 287 PF16035.5 Chalcone_2 Domain 3 203 204 41.8 9.7e-11 1 CL0560
Cotton_A_12152_CDS 22 123 8 123 PF04885.13 Stig1 Family 32 139 139 124.2 5e-36 1 No_clan
Cotton_A_01770_CDS 17 90 12 92 PF16845.5 SQAPI Domain 7 81 83 81.6 4e-23 1 CL0121
Cotton_A_01785_CDS 88 133 88 135 PF00646.33 F-box Domain 1 46 48 38.3 8.3e-10 1 CL0271
Cotton_A_12300_CDS 19 148 19 149 PF01467.26 CTP_transf_like Domain 1 142 143 116.9 8e-34 1 CL0039
Cotton_A_04618_CDS 16 40 11 41 PF01535.20 PPR Family 6 30 31 14.4 0.033 1 CL0020
Cotton_A_04618_CDS 48 71 47 72 PF01535.20 PPR Family 3 26 31 13.3 0.077 1 CL0020
Cotton_A_40173_CDS 41 93 41 94 PF13833.6 EF-hand_8 Domain 1 54 55 55.2 4.7e-15 1 CL0220
Cotton_A_20853_CDS 112 190 61 198 PF03358.15 FMN_red Domain 68 145 155 36.6 3.4e-09 1 CL0042
Cotton_A_37803_CDS 105 178 104 181 PF01253.22 SUI1 Domain 2 73 77 70.9 9.7e-20 1 No_clan
Cotton_A_15574_CDS 142 185 139 185 PF08387.10 FBD Family 3 46 46 34.1 1.8e-08 1 No_clan
Cotton_A_36004_CDS 21 477 20 478 PF01602.20 Adaptin_N Family 97 523 524 354.6 8.2e-106 1 CL0020
Cotton_A_36004_CDS 659 772 658 772 PF02883.20 Alpha_adaptinC2 Domain 2 111 111 105.4 1.9e-30 1 CL0159
Cotton_A_22545_CDS 46 288 46 288 PF13561.6 adh_short_C2 Domain 1 234 234 205.3 9.8e-61 1 CL0063
Cotton_A_20989_CDS 62 371 62 371 PF00389.30 2-Hacid_dh Domain 1 134 134 118.2 1.9e-34 1 CL0325
Cotton_A_20989_CDS 164 339 164 339 PF02826.19 2-Hacid_dh_C Domain 1 178 178 213.7 1.2e-63 1 CL0063
Cotton_A_20989_CDS 529 591 528 592 PF01842.25 ACT Domain 2 66 67 31.1 1.4e-07 1 CL0070
Cotton_A_14118_CDS 116 147 89 154 PF12796.7 Ank_2 Repeat 43 75 83 28.5 1.7e-06 1 CL0465
Cotton_A_14118_CDS 178 201 176 204 PF13606.6 Ank_3 Repeat 3 28 31 19.6 0.00086 1 CL0465
Cotton_A_14118_CDS 227 302 224 308 PF12796.7 Ank_2 Repeat 12 75 83 39.0 9.1e-10 1 CL0465
Cotton_A_24725_CDS 74 191 74 191 PF00917.26 MATH Domain 1 113 113 89.1 2e-25 1 CL0389
Cotton_A_24513_CDS 36 94 30 94 PF11976.8 Rad60-SLD Family 12 71 72 29.9 3.6e-07 1 CL0072
Cotton_A_10544_CDS 3 123 1 124 PF00125.24 Histone Domain 3 130 131 82.8 2.6e-23 1 CL0012
Cotton_A_00010_CDS 79 410 79 412 PF00248.21 Aldo_ket_red Domain 1 292 294 233.6 2.7e-69 1 No_clan
Cotton_A_06859_CDS 333 361 333 364 PF14383.6 VARLMGL Domain 1 29 32 23.9 2.1e-05 1 No_clan
Cotton_A_09480_CDS 34 214 33 214 PF00722.21 Glyco_hydro_16 Domain 2 177 177 202.0 4.9e-60 1 CL0004
Cotton_A_09480_CDS 241 288 240 288 PF06955.12 XET_C Family 2 47 47 60.4 1e-16 1 CL0004
Cotton_A_37832_CDS 1 81 1 82 PF00078.27 RVT_1 Family 132 221 222 62.7 3.5e-17 1 CL0027
Cotton_A_37832_CDS 139 173 137 176 PF17921.1 Integrase_H2C2 Domain 3 35 58 26.6 4.7e-06 1 CL0361
Cotton_A_31412_CDS 20 86 18 95 PF04855.12 SNF5 Family 5 73 237 52.3 6.5e-14 1 No_clan
Cotton_A_31412_CDS 97 167 93 198 PF04855.12 SNF5 Family 7 79 237 56.5 3.5e-15 1 No_clan
Cotton_A_00733_CDS 7 237 7 275 PF05368.13 NmrA Family 1 228 233 229.1 5.1e-68 1 CL0063
Cotton_A_19565_CDS 32 238 31 238 PF01027.20 Bax1-I Family 2 207 207 162.1 1.5e-47 1 CL0453
Cotton_A_09703_CDS 50 154 47 160 PF00168.30 C2 Domain 9 97 103 47.2 2.2e-12 1 CL0154
Cotton_A_09703_CDS 196 288 192 298 PF00168.30 C2 Domain 8 94 103 34.4 2.1e-08 1 CL0154
Cotton_A_09703_CDS 359 575 359 575 PF07002.16 Copine Family 1 218 218 267.5 7.5e-80 1 CL0128
Cotton_A_10790_CDS 33 272 33 276 PF12697.7 Abhydrolase_6 Domain 1 216 220 63.3 4.8e-17 1 CL0028
Cotton_A_35667_CDS 132 599 131 599 PF01293.20 PEPCK_ATP Family 2 465 465 695.3 3.5e-209 1 CL0374
Cotton_A_00280_CDS 19 270 18 284 PF00133.22 tRNA-synt_1 Family 2 245 602 299.8 3.1e-89 1 CL0039
Cotton_A_00280_CDS 304 672 291 673 PF00133.22 tRNA-synt_1 Family 249 601 602 427.1 9.5e-128 1 CL0039
Cotton_A_00280_CDS 728 807 728 808 PF08264.13 Anticodon_1 Domain 1 80 152 41.8 1e-10 1 CL0258
Cotton_A_12740_CDS 59 123 15 124 PF16457.5 PH_12 Domain 61 133 134 27.8 2.9e-06 1 CL0266
Cotton_A_12740_CDS 298 346 297 346 PF00415.18 RCC1 Repeat 2 50 50 29.7 7.6e-07 1 CL0186
Cotton_A_12740_CDS 350 401 349 401 PF00415.18 RCC1 Repeat 2 50 50 36.1 7.6e-09 1 CL0186
Cotton_A_12740_CDS 405 453 404 453 PF00415.18 RCC1 Repeat 2 50 50 51.9 8.5e-14 1 CL0186
Cotton_A_12740_CDS 467 514 467 516 PF00415.18 RCC1 Repeat 1 48 50 40.3 3.7e-10 1 CL0186
Cotton_A_12740_CDS 519 568 519 568 PF00415.18 RCC1 Repeat 1 50 50 24.9 2.3e-05 1 CL0186
Cotton_A_12740_CDS 573 620 572 620 PF00415.18 RCC1 Repeat 3 50 50 52.2 6.7e-14 1 CL0186
Cotton_A_12740_CDS 624 690 623 691 PF01363.21 FYVE Domain 2 67 68 49.4 3.6e-13 1 CL0390
Cotton_A_12740_CDS 872 907 872 908 PF13713.6 BRX_N Domain 1 36 37 60.6 8.6e-17 1 No_clan
Cotton_A_12740_CDS 1029 1084 1029 1084 PF08381.11 BRX Domain 1 56 56 99.6 4.4e-29 1 No_clan
Cotton_A_03613_CDS 186 295 171 296 PF01426.18 BAH Domain 15 121 122 40.6 1.9e-10 1 No_clan
Cotton_A_03613_CDS 445 499 445 501 PF00385.24 Chromo Domain 1 52 54 37.4 1.7e-09 1 CL0049
Cotton_A_03613_CDS 509 869 499 871 PF00145.17 DNA_methylase Domain 57 332 335 120.5 9.3e-35 1 CL0063
Cotton_A_01571_CDS 17 76 17 76 PF00137.21 ATP-synt_C Family 1 60 60 52.1 6.2e-14 1 No_clan
Cotton_A_01571_CDS 97 155 96 155 PF00137.21 ATP-synt_C Family 2 60 60 72.2 3.2e-20 1 No_clan
Cotton_A_38709_CDS 58 169 56 207 PF07823.11 CPDase Domain 4 127 199 29.0 7.9e-07 1 CL0247
Cotton_A_16096_CDS 87 185 87 195 PF05911.11 FPP Coiled-coil 1 99 867 125.0 2.9e-36 1 No_clan
Cotton_A_16096_CDS 202 268 200 272 PF05911.11 FPP Coiled-coil 139 205 867 64.5 5.7e-18 1 No_clan
Cotton_A_16096_CDS 312 384 300 398 PF05911.11 FPP Coiled-coil 351 425 867 62.0 3.3e-17 1 No_clan
Cotton_A_16096_CDS 498 605 487 610 PF05911.11 FPP Coiled-coil 754 861 867 63.7 1.1e-17 1 No_clan
Cotton_A_32137_CDS 28 60 28 60 PF02375.17 JmjN Family 1 33 34 43.3 2.5e-11 1 CL0029
Cotton_A_32137_CDS 129 231 124 231 PF02373.22 JmjC Domain 22 114 114 83.0 1.9e-23 1 CL0029
Cotton_A_13837_CDS 43 320 41 321 PF07714.17 Pkinase_Tyr Domain 3 258 259 133.0 1.2e-38 1 CL0016
Cotton_A_07604_CDS 24 82 23 82 PF02874.23 ATP-synt_ab_N Domain 11 69 69 45.9 5.9e-12 1 CL0275
Cotton_A_16179_CDS 31 88 31 119 PF01277.17 Oleosin Family 1 58 113 60.5 1.1e-16 1 No_clan
Cotton_A_21938_CDS 1 60 1 60 PF02798.20 GST_N Domain 15 76 76 56.1 3.6e-15 1 CL0172
Cotton_A_21938_CDS 105 171 79 171 PF13410.6 GST_C_2 Domain 5 69 69 43.3 2.8e-11 1 CL0497
Cotton_A_29316_CDS 222 388 220 393 PF00270.29 DEAD Domain 3 172 176 68.2 7.5e-19 1 CL0023
Cotton_A_29316_CDS 550 658 549 659 PF00271.31 Helicase_C Family 2 110 111 61.3 9.9e-17 1 CL0023
Cotton_A_29316_CDS 676 730 666 731 PF16124.5 RecQ_Zn_bind Domain 10 65 66 36.5 6e-09 1 No_clan
Cotton_A_07364_CDS 57 195 54 196 PF00056.23 Ldh_1_N Family 10 140 141 102.4 2.1e-29 1 CL0063
Cotton_A_07364_CDS 199 367 199 372 PF02866.18 Ldh_1_C Domain 1 161 167 125.5 1.9e-36 1 CL0341
Cotton_A_32234_CDS 8 331 7 331 PF00656.22 Peptidase_C14 Domain 2 248 248 166.0 1.4e-48 1 CL0093
Cotton_A_23145_CDS 85 113 84 114 PF01535.20 PPR Family 2 30 31 17.5 0.0034 1 CL0020
Cotton_A_23145_CDS 122 146 120 147 PF01535.20 PPR Family 4 28 31 10.4 0.62 1 CL0020
Cotton_A_23145_CDS 150 198 150 199 PF13041.6 PPR_2 Repeat 1 49 50 68.1 5.5e-19 1 CL0020
Cotton_A_23145_CDS 228 253 225 254 PF01535.20 PPR Family 5 30 31 12.3 0.15 1 CL0020
Cotton_A_23145_CDS 256 305 256 305 PF13041.6 PPR_2 Repeat 1 50 50 61.6 6.1e-17 1 CL0020
Cotton_A_23145_CDS 326 374 326 375 PF13041.6 PPR_2 Repeat 1 49 50 64.1 9.6e-18 1 CL0020
Cotton_A_19210_CDS 68 457 68 469 PF04563.15 RNA_pol_Rpb2_1 Family 1 192 203 118.3 3e-34 1 No_clan
Cotton_A_19210_CDS 279 420 255 420 PF04561.14 RNA_pol_Rpb2_2 Domain 33 190 190 50.8 1.5e-13 1 No_clan
Cotton_A_19210_CDS 498 558 495 559 PF04565.16 RNA_pol_Rpb2_3 Domain 4 67 68 57.0 1.6e-15 1 No_clan
Cotton_A_19210_CDS 597 658 597 658 PF04566.13 RNA_pol_Rpb2_4 Domain 1 62 62 69.5 2.3e-19 1 No_clan
Cotton_A_19210_CDS 674 721 674 721 PF04567.17 RNA_pol_Rpb2_5 Domain 1 57 58 30.3 4.7e-07 1 No_clan
Cotton_A_19210_CDS 731 1101 729 1101 PF00562.28 RNA_pol_Rpb2_6 Domain 3 390 390 329.9 2.2e-98 1 CL0410
Cotton_A_19210_CDS 1103 1201 1103 1202 PF04560.20 RNA_pol_Rpb2_7 Domain 1 86 87 106.8 5.6e-31 1 No_clan
Cotton_A_20440_CDS 107 183 101 184 PF08585.12 RMI1_N Domain 140 216 217 62.6 4.3e-17 1 CL0021
Cotton_A_02953_CDS 2 121 1 122 PF05903.14 Peptidase_C97 Domain 24 150 151 132.3 1.2e-38 1 CL0125
Cotton_A_21724_CDS 121 279 120 284 PF04055.21 Radical_SAM Domain 2 161 167 48.0 1.7e-12 1 CL0036
Cotton_A_21724_CDS 125 209 122 227 PF13394.6 Fer4_14 Domain 7 93 118 23.5 4.5e-05 1 CL0344
Cotton_A_15420_CDS 118 431 118 432 PF07993.12 NAD_binding_4 Family 1 256 257 261.0 9e-78 1 CL0063
Cotton_A_15420_CDS 533 603 516 604 PF03015.19 Sterile Family 23 92 93 63.6 1.5e-17 1 No_clan
Cotton_A_23614_CDS 64 120 62 120 PF11250.8 FAF Family 3 54 54 72.7 2.1e-20 1 No_clan
Cotton_A_22007_CDS 189 239 187 240 PF04570.14 zf-FLZ Domain 3 53 54 74.6 3.2e-21 1 CL0175
Cotton_A_03153_CDS 187 242 187 242 PF02045.15 CBFB_NFYA Family 1 56 56 93.5 9.1e-27 1 No_clan
Cotton_A_15043_CDS 56 192 55 192 PF16863.5 NtCtMGAM_N Domain 2 116 116 111.5 2.6e-32 1 CL0103
Cotton_A_15043_CDS 197 268 195 270 PF13802.6 Gal_mutarotas_2 Domain 3 63 66 36.4 4.9e-09 1 CL0103
Cotton_A_15043_CDS 289 756 289 756 PF01055.26 Glyco_hydro_31 Family 1 440 440 521.9 1.7e-156 1 CL0058
Cotton_A_18157_CDS 45 115 45 115 PF00076.22 RRM_1 Domain 1 70 70 79.9 9e-23 1 CL0221
Cotton_A_08886_CDS 16 137 14 142 PF04857.20 CAF1 Family 3 125 319 36.7 2.5e-09 1 CL0219
Cotton_A_13288_CDS 3 211 3 212 PF00091.25 Tubulin Domain 1 196 197 233.8 2e-69 1 CL0566
Cotton_A_13288_CDS 261 382 261 383 PF03953.17 Tubulin_C Domain 1 125 126 137.0 3.7e-40 1 CL0442
Cotton_A_31271_CDS 9 39 7 61 PF13519.6 VWA_2 Domain 3 33 107 29.7 7.9e-07 1 CL0128
Cotton_A_05349_CDS 38 117 25 123 PF02309.16 AUX_IAA Family 71 163 237 76.5 2.7e-21 1 CL0072
Cotton_A_05349_CDS 124 167 119 169 PF02309.16 AUX_IAA Family 191 234 237 83.2 2.5e-23 1 CL0072
Cotton_A_28739_CDS 170 213 163 213 PF13855.6 LRR_8 Repeat 17 61 61 40.1 2.3e-10 1 CL0022
Cotton_A_28739_CDS 255 306 255 306 PF13855.6 LRR_8 Repeat 9 61 61 27.4 2.1e-06 1 CL0022
Cotton_A_28739_CDS 318 377 317 377 PF13855.6 LRR_8 Repeat 2 61 61 32.0 7.6e-08 1 CL0022
Cotton_A_29677_CDS 86 132 84 132 PF13639.6 zf-RING_2 Domain 3 44 44 37.7 2e-09 1 CL0229
Cotton_A_31151_CDS 29 132 26 133 PF13947.6 GUB_WAK_bind Domain 4 105 106 65.0 8.8e-18 1 No_clan
Cotton_A_31151_CDS 305 576 305 580 PF00069.25 Pkinase Domain 1 258 264 178.0 2.2e-52 1 CL0016
Cotton_A_27873_CDS 10 90 9 118 PF18052.1 Rx_N Domain 2 82 93 76.0 2.1e-21 1 No_clan
Cotton_A_27873_CDS 105 149 91 151 PF13855.6 LRR_8 Repeat 14 59 61 28.5 9.2e-07 1 CL0022
Cotton_A_39542_CDS 15 175 15 176 PF00071.22 Ras Domain 1 161 162 206.5 1.8e-61 1 CL0023
Cotton_A_22433_CDS 303 373 303 375 PF04564.15 U-box Domain 1 71 73 76.1 1.7e-21 1 CL0229
Cotton_A_22433_CDS 425 464 425 465 PF00514.23 Arm Repeat 1 40 41 33.9 2.1e-08 1 CL0020
Cotton_A_07929_CDS 202 253 202 253 PF00249.31 Myb_DNA-binding Domain 1 46 46 25.2 1.4e-05 1 CL0123
Cotton_A_37333_CDS 17 133 9 133 PF08311.12 Mad3_BUB1_I Domain 7 124 124 116.6 6.6e-34 1 No_clan
Cotton_A_16955_CDS 98 183 88 216 PF02581.17 TMP-TENI Domain 11 97 181 25.6 6.3e-06 1 CL0036
Cotton_A_16955_CDS 373 417 373 432 PF00350.23 Dynamin_N Domain 1 45 168 42.8 5.4e-11 1 CL0023
Cotton_A_13449_CDS 5 140 5 140 PF03952.16 Enolase_N Domain 1 131 131 184.9 6.1e-55 1 CL0227
Cotton_A_13449_CDS 149 441 148 443 PF00113.22 Enolase_C Domain 2 294 296 529.7 1.8e-159 1 CL0256
Cotton_A_01882_CDS 31 258 24 258 PF00078.27 RVT_1 Family 14 222 222 41.4 1.1e-10 1 CL0027
Cotton_A_01882_CDS 433 534 428 564 PF01348.21 Intron_maturas2 Family 5 113 140 51.4 1.1e-13 1 CL0359
Cotton_A_33120_CDS 24 349 17 369 PF00067.22 p450 Domain 110 440 463 198.2 2.1e-58 1 No_clan
Cotton_A_19788_CDS 46 517 45 518 PF03155.15 Alg6_Alg8 Family 2 483 484 467.2 6.8e-140 1 CL0111
Cotton_A_08556_CDS 25 103 25 103 PF05922.16 Inhibitor_I9 Domain 1 82 82 46.5 4.3e-12 1 CL0570
Cotton_A_08556_CDS 128 588 128 607 PF00082.22 Peptidase_S8 Domain 1 285 298 162.1 1.8e-47 1 No_clan
Cotton_A_08556_CDS 368 457 366 457 PF02225.22 PA Family 3 89 89 36.5 3.5e-09 1 CL0364
Cotton_A_08556_CDS 662 766 662 766 PF17766.1 fn3_6 Domain 1 99 99 90.3 7.1e-26 1 CL0159
Cotton_A_32636_CDS 138 540 137 541 PF00464.19 SHMT Domain 2 398 399 558.2 7.8e-168 1 CL0061
Cotton_A_35622_CDS 40 161 39 162 PF00289.22 Biotin_carb_N Domain 2 109 110 99.4 1.6e-28 1 CL0483
Cotton_A_35622_CDS 208 386 199 390 PF02786.17 CPSase_L_D2 Domain 20 203 211 149.8 7.1e-44 1 CL0179
Cotton_A_04245_CDS 71 427 70 429 PF07690.16 MFS_1 Family 2 351 353 77.0 1.2e-21 1 CL0015
Cotton_A_35809_CDS 677 823 676 826 PF00179.26 UQ_con Domain 2 136 140 83.1 1.4e-23 1 CL0208
Cotton_A_27835_CDS 22 79 19 82 PF12861.7 zf-ANAPC11 Family 4 57 85 23.5 4.1e-05 1 CL0229
Cotton_A_21766_CDS 27 367 27 369 PF00657.22 Lipase_GDSL Family 1 198 200 50.2 3.1e-13 1 CL0264
Cotton_A_18917_CDS 64 256 64 259 PF01975.17 SurE Family 1 192 195 161.1 2.7e-47 1 No_clan
Cotton_A_26861_CDS 35 137 33 138 PF13947.6 GUB_WAK_bind Domain 4 105 106 60.6 2.1e-16 1 No_clan
Cotton_A_26861_CDS 306 577 306 581 PF00069.25 Pkinase Domain 1 258 264 175.3 1.5e-51 1 CL0016
Cotton_A_05693_CDS 34 107 32 109 PF00631.22 G-gamma Domain 3 66 68 42.8 3.8e-11 1 No_clan
Cotton_A_19877_CDS 118 170 117 170 PF14416.6 PMR5N Domain 2 53 53 70.6 9.8e-20 1 No_clan
Cotton_A_19877_CDS 171 450 171 451 PF13839.6 PC-Esterase Family 1 282 283 330.9 8.4e-99 1 CL0264
Cotton_A_10398_CDS 15 105 13 105 PF13650.6 Asp_protease_2 Domain 3 90 90 33.4 5.3e-08 1 CL0129
Cotton_A_21176_CDS 12 116 6 132 PF08506.10 Cse1 Family 188 289 370 27.9 9.8e-07 1 CL0020
Cotton_A_34868_CDS 38 151 37 152 PF08240.12 ADH_N Domain 2 108 109 98.1 2.6e-28 1 CL0296
Cotton_A_34868_CDS 194 317 194 318 PF00107.26 ADH_zinc_N Family 1 129 130 68.2 6.5e-19 1 CL0063
Cotton_A_25617_CDS 59 154 59 155 PF06749.12 DUF1218 Family 1 90 91 84.2 7e-24 1 No_clan
Cotton_A_35291_CDS 65 148 65 151 PF16656.5 Pur_ac_phosph_N Domain 1 67 94 36.0 7.6e-09 1 CL0159
Cotton_A_29735_CDS 276 403 213 420 PF00201.18 UDPGT Family 268 379 499 68.0 6.7e-19 1 CL0113
Cotton_A_32870_CDS 23 147 23 147 PF02365.15 NAM Family 1 126 126 129.7 1.1e-37 1 No_clan
Cotton_A_40183_CDS 5 102 3 103 PF02271.16 UCR_14kD Family 3 93 100 91.0 3.9e-26 1 No_clan
Cotton_A_10431_CDS 53 186 52 186 PF02469.22 Fasciclin Domain 2 128 128 75.0 5.9e-21 1 No_clan
Cotton_A_10431_CDS 293 413 274 413 PF02469.22 Fasciclin Domain 14 128 128 32.2 1e-07 1 No_clan
Cotton_A_35164_CDS 103 529 100 530 PF00854.21 PTR2 Family 4 394 395 357.8 6.4e-107 1 CL0015
Cotton_A_39736_CDS 61 324 59 327 PF12697.7 Abhydrolase_6 Domain 3 217 220 61.5 1.7e-16 1 CL0028
Cotton_A_17203_CDS 40 157 40 157 PF00188.26 CAP Domain 1 126 126 66.7 3.4e-18 1 CL0659
Cotton_A_17203_CDS 353 617 350 621 PF00069.25 Pkinase Domain 4 260 264 184.9 1.8e-54 1 CL0016
Cotton_A_34846_CDS 4 136 4 136 PF02966.16 DIM1 Domain 1 133 133 224.8 2.4e-67 1 CL0172
Cotton_A_13888_CDS 177 414 158 418 PF00777.18 Glyco_transf_29 Family 20 261 269 126.1 1.6e-36 1 No_clan
Cotton_A_16891_CDS 67 206 67 207 PF00781.24 DAGK_cat Family 1 125 126 97.8 3.4e-28 1 CL0240
Cotton_A_16891_CDS 259 436 259 436 PF00609.19 DAGK_acc Family 1 160 160 141.8 2.2e-41 1 No_clan
Cotton_A_01196_CDS 162 203 161 203 PF03790.13 KNOX1 Family 2 43 43 59.8 1.5e-16 1 No_clan
Cotton_A_01196_CDS 220 270 219 270 PF03791.13 KNOX2 Family 2 48 48 76.3 9.3e-22 1 No_clan
Cotton_A_01196_CDS 328 349 328 349 PF03789.13 ELK Domain 1 22 22 28.6 1e-06 1 No_clan
Cotton_A_01196_CDS 368 407 368 407 PF05920.11 Homeobox_KN Family 1 40 40 63.7 1e-17 1 CL0123
Cotton_A_08605_CDS 82 805 81 810 PF05879.12 RHD3 Family 7 737 743 926.9 8.2e-279 1 CL0023
Cotton_A_06357_CDS 6 153 6 154 PF00056.23 Ldh_1_N Family 1 140 141 118.3 2.7e-34 1 CL0063
Cotton_A_06357_CDS 157 326 157 331 PF02866.18 Ldh_1_C Domain 1 161 167 125.2 2.4e-36 1 CL0341
Cotton_A_03444_CDS 43 94 42 101 PF03227.16 GILT Family 2 53 106 48.4 9.2e-13 1 CL0172
Cotton_A_14906_CDS 63 120 59 120 PF05498.11 RALF Family 6 65 65 87.9 6.3e-25 1 No_clan
Cotton_A_26251_CDS 235 558 235 569 PF04910.14 Tcf25 Family 1 336 350 223.2 4.9e-66 1 CL0020
Cotton_A_06351_CDS 22 68 22 68 PF12937.7 F-box-like Domain 1 48 48 32.3 6.6e-08 1 CL0271
Cotton_A_06351_CDS 373 412 372 412 PF00514.23 Arm Repeat 2 41 41 33.1 3.7e-08 1 CL0020
Cotton_A_06351_CDS 455 497 454 497 PF00514.23 Arm Repeat 2 41 41 23.3 4.7e-05 1 CL0020
Cotton_A_06351_CDS 549 580 547 581 PF00514.23 Arm Repeat 9 40 41 27.3 2.5e-06 1 CL0020
Cotton_A_06351_CDS 628 665 626 666 PF00514.23 Arm Repeat 3 40 41 31.2 1.5e-07 1 CL0020
Cotton_A_22413_CDS 28 346 28 347 PF00332.18 Glyco_hydro_17 Domain 1 312 313 223.0 6.8e-66 1 CL0058
Cotton_A_22413_CDS 368 437 368 438 PF07983.13 X8 Domain 1 75 76 65.3 5.9e-18 1 No_clan
Cotton_A_23031_CDS 152 185 152 186 PF05553.11 DUF761 Family 1 34 36 50.1 1.4e-13 1 No_clan
Cotton_A_04738_CDS 28 102 27 103 PF01253.22 SUI1 Domain 2 76 77 91.8 3e-26 1 No_clan
Cotton_A_03511_CDS 157 278 156 280 PF04488.15 Gly_transf_sug Family 2 95 98 88.2 4.2e-25 1 CL0110
Cotton_A_03511_CDS 296 418 295 421 PF04572.12 Gb3_synth Family 2 127 130 97.6 5.9e-28 1 No_clan
Cotton_A_02947_CDS 29 226 26 275 PF10250.9 O-FucT Family 10 214 336 53.6 2.7e-14 1 CL0113
Cotton_A_02946_CDS 47 352 45 352 PF02535.22 Zip Family 3 333 333 259.5 4.4e-77 1 CL0184
Cotton_A_10356_CDS 53 152 52 152 PF12796.7 Ank_2 Repeat 2 83 83 60.7 1.5e-16 1 CL0465
Cotton_A_10356_CDS 246 364 246 378 PF00004.29 AAA Domain 1 119 132 50.4 2.9e-13 1 CL0023
Cotton_A_18948_CDS 64 179 64 181 PF01926.23 MMR_HSR1 Family 1 112 114 75.7 2.8e-21 1 CL0023
Cotton_A_18948_CDS 184 282 184 282 PF16897.5 MMR_HSR1_Xtn Family 1 106 106 121.7 1.2e-35 1 No_clan
Cotton_A_18948_CDS 283 359 283 359 PF02824.21 TGS Family 1 60 60 82.6 1.5e-23 1 CL0072
Cotton_A_01672_CDS 16 102 16 107 PF02362.21 B3 Family 1 94 101 62.9 2.1e-17 1 CL0405
Cotton_A_01672_CDS 182 255 171 260 PF02362.21 B3 Family 18 96 101 35.6 6.5e-09 1 CL0405
Cotton_A_01672_CDS 320 401 309 402 PF02362.21 B3 Family 15 100 101 53.6 1.5e-14 1 CL0405
Cotton_A_01094_CDS 37 96 36 98 PF14008.6 Metallophos_C Domain 2 60 63 59.4 4.6e-16 1 No_clan
Cotton_A_24950_CDS 176 220 172 221 PF12678.7 zf-rbx1 Domain 10 54 55 43.1 3.7e-11 1 CL0229
Cotton_A_09931_CDS 67 116 67 116 PF13041.6 PPR_2 Repeat 1 50 50 30.4 3.3e-07 1 CL0020
Cotton_A_09931_CDS 168 201 168 201 PF13041.6 PPR_2 Repeat 1 34 50 34.6 1.6e-08 1 CL0020
Cotton_A_09931_CDS 202 231 202 232 PF01535.20 PPR Family 1 30 31 27.3 2.6e-06 1 CL0020
Cotton_A_09931_CDS 234 262 233 263 PF01535.20 PPR Family 2 30 31 26.5 4.7e-06 1 CL0020
Cotton_A_09931_CDS 293 342 292 343 PF13041.6 PPR_2 Repeat 2 49 50 41.2 1.4e-10 1 CL0020
Cotton_A_09931_CDS 396 442 395 444 PF13041.6 PPR_2 Repeat 2 48 50 42.8 4.3e-11 1 CL0020
Cotton_A_09931_CDS 472 494 471 497 PF01535.20 PPR Family 5 27 31 15.5 0.015 1 CL0020
Cotton_A_15512_CDS 177 309 176 310 PF00664.23 ABC_membrane Family 139 273 274 45.6 7e-12 1 CL0241
Cotton_A_15512_CDS 384 470 360 471 PF00005.27 ABC_tran Domain 62 136 137 38.8 1.2e-09 1 CL0023
Cotton_A_15512_CDS 626 878 622 887 PF00664.23 ABC_membrane Family 7 247 274 78.5 6.3e-22 1 CL0241
Cotton_A_15512_CDS 948 1039 936 1040 PF00005.27 ABC_tran Domain 55 136 137 36.8 5.1e-09 1 CL0023
Cotton_A_16103_CDS 46 292 46 301 PF03850.14 Tfb4 Domain 1 243 276 204.7 1.9e-60 1 CL0128
Cotton_A_22319_CDS 66 208 64 208 PF10604.9 Polyketide_cyc2 Family 3 143 143 74.7 8.4e-21 1 CL0209
Cotton_A_06625_CDS 29 111 28 111 PF00626.22 Gelsolin Domain 2 76 76 56.3 2.3e-15 1 CL0092
Cotton_A_06625_CDS 150 214 148 218 PF00626.22 Gelsolin Domain 3 67 76 37.7 1.4e-09 1 CL0092
Cotton_A_06625_CDS 265 337 263 338 PF00626.22 Gelsolin Domain 4 75 76 40.6 1.8e-10 1 CL0092
Cotton_A_06625_CDS 410 488 407 488 PF00626.22 Gelsolin Domain 6 76 76 43.9 1.7e-11 1 CL0092
Cotton_A_06625_CDS 536 605 535 605 PF00626.22 Gelsolin Domain 2 76 76 30.7 2.2e-07 1 CL0092
Cotton_A_31754_CDS 47 124 42 127 PF12643.7 MazG-like Domain 6 81 85 30.9 2.5e-07 1 CL0231
Cotton_A_26186_CDS 101 226 101 228 PF06979.12 TMEM70 Family 1 127 132 80.7 1.2e-22 1 No_clan
Cotton_A_15352_CDS 35 424 35 433 PF00067.22 p450 Domain 1 393 463 307.6 1.4e-91 1 No_clan
Cotton_A_03200_CDS 13 93 3 95 PF00125.24 Histone Domain 48 129 131 54.3 1.7e-14 1 CL0012
Cotton_A_03200_CDS 96 129 96 130 PF16211.5 Histone_H2A_C Family 1 34 35 64.7 4.5e-18 1 No_clan
Cotton_A_19274_CDS 133 229 133 230 PF00011.21 HSP20 Family 1 101 102 99.7 8.5e-29 1 CL0190
Cotton_A_19665_CDS 104 312 104 313 PF13460.6 NAD_binding_10 Domain 1 183 184 60.9 1.5e-16 1 CL0063
Cotton_A_31488_CDS 28 123 27 125 PF00169.29 PH Domain 2 103 105 72.2 4.1e-20 1 CL0266
Cotton_A_07291_CDS 133 547 131 548 PF00654.20 Voltage_CLC Family 3 353 354 316.8 1.9e-94 1 No_clan
Cotton_A_07291_CDS 697 743 689 744 PF00571.28 CBS Domain 8 51 57 16.8 0.0071 1 No_clan
Cotton_A_03034_CDS 330 371 328 371 PF13639.6 zf-RING_2 Domain 3 44 44 47.4 1.7e-12 1 CL0229
Cotton_A_16568_CDS 32 236 30 237 PF00009.27 GTP_EFTU Domain 3 193 194 88.0 5.8e-25 1 CL0023
Cotton_A_16568_CDS 268 350 268 351 PF03144.25 GTP_EFTU_D2 Domain 1 73 74 39.4 6.1e-10 1 CL0575
Cotton_A_16568_CDS 362 451 361 451 PF09173.11 eIF2_C Domain 2 86 86 123.2 3.9e-36 1 No_clan
Cotton_A_40735_CDS 58 310 56 310 PF07714.17 Pkinase_Tyr Domain 3 259 259 222.7 4.6e-66 1 CL0016
Cotton_A_23494_CDS 994 1139 992 1141 PF07744.13 SPOC Domain 3 149 151 70.5 1.4e-19 1 CL0616
Cotton_A_12650_CDS 18 398 18 399 PF00199.19 Catalase Domain 1 382 383 580.0 2.3e-174 1 No_clan
Cotton_A_12650_CDS 423 486 422 486 PF06628.12 Catalase-rel Family 3 65 65 57.0 1.7e-15 1 No_clan
Cotton_A_34653_CDS 98 302 94 302 PF00481.21 PP2C Family 40 258 258 209.5 6.5e-62 1 CL0238
Cotton_A_07717_CDS 6 239 4 254 PF00743.19 FMO-like Family 3 220 532 129.0 1.8e-37 1 CL0063
Cotton_A_07717_CDS 261 399 251 407 PF00743.19 FMO-like Family 308 446 532 63.6 1.2e-17 1 CL0063
Cotton_A_22590_CDS 15 235 10 251 PF00931.22 NB-ARC Domain 8 228 252 197.0 2.9e-58 1 CL0023
Cotton_A_12224_CDS 23 199 23 199 PF02223.17 Thymidylate_kin Domain 1 185 185 154.6 2.2e-45 1 CL0023
Cotton_A_08100_CDS 32 346 32 348 PF00332.18 Glyco_hydro_17 Domain 1 311 313 276.1 4.6e-82 1 CL0058
Cotton_A_16787_CDS 30 113 30 113 PF02298.17 Cu_bind_like Domain 1 84 84 72.6 2e-20 1 CL0026
Cotton_A_06962_CDS 280 375 275 376 PF04191.13 PEMT Family 13 105 106 30.4 4.1e-07 1 CL0115
Cotton_A_12576_CDS 14 213 14 215 PF03360.16 Glyco_transf_43 Family 1 197 205 135.9 1.5e-39 1 CL0110
Cotton_A_12480_CDS 89 480 83 483 PF00202.21 Aminotran_3 Domain 11 403 406 323.6 1.4e-96 1 CL0061
Cotton_A_09777_CDS 146 194 103 200 PF16131.5 Torus Domain 53 104 109 31.6 2.2e-07 1 CL0537
Cotton_A_09777_CDS 230 286 230 295 PF00076.22 RRM_1 Domain 1 62 70 51.0 9.3e-14 1 CL0221
Cotton_A_08453_CDS 92 156 92 157 PF00512.25 HisKA Domain 1 66 67 48.9 4.8e-13 1 CL0025
Cotton_A_37056_CDS 1 127 1 128 PF05755.12 REF Family 75 205 206 109.0 2.8e-31 1 No_clan
Cotton_A_05697_CDS 168 227 160 229 PF13424.6 TPR_12 Repeat 9 75 77 32.7 6.9e-08 1 CL0020
Cotton_A_05697_CDS 306 333 305 337 PF13181.6 TPR_8 Repeat 2 29 34 14.2 0.037 1 CL0020
Cotton_A_10509_CDS 38 113 38 193 PF03634.13 TCP Family 1 80 156 97.3 1.3e-27 1 No_clan
Cotton_A_38638_CDS 15 297 10 310 PF01432.20 Peptidase_M3 Family 88 367 458 278.5 1.3e-82 1 CL0126
Cotton_A_21601_CDS 25 72 25 72 PF00249.31 Myb_DNA-binding Domain 1 46 46 54.2 1.2e-14 1 CL0123
Cotton_A_21601_CDS 83 122 78 123 PF00249.31 Myb_DNA-binding Domain 6 45 46 50.1 2.3e-13 1 CL0123
Cotton_A_37478_CDS 34 399 34 400 PF12819.7 Malectin_like Domain 1 335 336 148.6 2.4e-43 1 CL0202
Cotton_A_37478_CDS 512 778 507 778 PF07714.17 Pkinase_Tyr Domain 6 259 259 156.5 7.5e-46 1 CL0016
Cotton_A_13158_CDS 1 418 1 419 PF04100.12 Vps53_N Family 1 379 380 501.0 2.1e-150 1 CL0295
Cotton_A_01876_CDS 1 81 1 82 PF04051.16 TRAPP Family 66 145 146 47.0 2.1e-12 1 CL0210
Cotton_A_06595_CDS 52 546 43 574 PF03999.12 MAP65_ASE1 Family 17 498 598 309.1 6.8e-92 1 No_clan
Cotton_A_06400_CDS 33 162 33 178 PF03345.14 DDOST_48kD Family 1 130 415 105.4 3e-30 1 No_clan
Cotton_A_30540_CDS 15 465 15 474 PF00067.22 p450 Domain 1 454 463 292.4 5.5e-87 1 No_clan
Cotton_A_10268_CDS 17 130 14 142 PF00582.26 Usp Domain 5 122 141 33.7 4.4e-08 1 CL0039
Cotton_A_10268_CDS 439 691 437 709 PF00069.25 Pkinase Domain 3 254 264 138.4 2.8e-40 1 CL0016
Cotton_A_13511_CDS 44 116 10 116 PF14368.6 LTP_2 Family 23 97 97 40.6 2.1e-10 1 CL0482
Cotton_A_38980_CDS 76 174 76 174 PF01453.24 B_lectin Domain 1 105 105 103.7 6.9e-30 1 No_clan
Cotton_A_38980_CDS 206 313 206 314 PF00954.20 S_locus_glycop Domain 1 110 111 75.2 5.6e-21 1 No_clan
Cotton_A_38980_CDS 343 400 335 401 PF08276.11 PAN_2 Domain 3 66 67 47.4 1.5e-12 1 CL0168
Cotton_A_38980_CDS 517 783 516 785 PF07714.17 Pkinase_Tyr Domain 2 257 259 156.3 8.4e-46 1 CL0016
Cotton_A_30579_CDS 10 182 5 184 PF00025.21 Arf Domain 6 173 175 172.1 7.3e-51 1 CL0023
Cotton_A_20863_CDS 3 213 3 214 PF00091.25 Tubulin Domain 1 196 197 226.8 2.6e-67 1 CL0566
Cotton_A_20863_CDS 263 392 263 393 PF03953.17 Tubulin_C Domain 1 125 126 172.4 4.2e-51 1 CL0442
Cotton_A_16373_CDS 32 63 27 63 PF00187.19 Chitin_bind_1 Domain 8 38 38 29.5 7.5e-07 1 No_clan
Cotton_A_16373_CDS 76 219 76 224 PF00182.19 Glyco_hydro_19 Domain 1 158 232 144.8 3.8e-42 1 CL0037
Cotton_A_16373_CDS 226 273 221 273 PF00182.19 Glyco_hydro_19 Domain 186 232 232 31.3 1.9e-07 1 CL0037
Cotton_A_03136_CDS 29 166 27 169 PF03208.19 PRA1 Family 3 140 143 145.7 7.1e-43 1 No_clan
Cotton_A_32506_CDS 172 341 124 358 PF00326.21 Peptidase_S9 Domain 44 188 212 32.3 6.4e-08 1 CL0028
Cotton_A_00552_CDS 1 436 1 436 PF06219.12 DUF1005 Family 1 437 437 594.0 1.9e-178 1 No_clan
Cotton_A_17096_CDS 43 96 43 101 PF00226.31 DnaJ Domain 1 55 63 58.2 6.4e-16 1 CL0392
Cotton_A_15306_CDS 3 67 1 67 PF02519.14 Auxin_inducible Family 25 90 90 98.3 2e-28 1 No_clan
Cotton_A_10013_CDS 136 253 135 257 PF02893.20 GRAM Domain 2 110 114 72.1 3.1e-20 1 CL0266
Cotton_A_26651_CDS 61 167 59 167 PF04398.12 DUF538 Family 3 112 112 99.5 1.5e-28 1 No_clan
Cotton_A_24328_CDS 10 96 6 98 PF14368.6 LTP_2 Family 3 93 97 40.9 1.6e-10 1 CL0482
Cotton_A_25303_CDS 42 67 40 69 PF01535.20 PPR Family 4 29 31 22.1 0.00012 1 CL0020
Cotton_A_25303_CDS 144 170 141 171 PF01535.20 PPR Family 4 30 31 11.7 0.24 1 CL0020
Cotton_A_25303_CDS 173 196 172 202 PF01535.20 PPR Family 2 25 31 22.5 8.8e-05 1 CL0020
Cotton_A_25303_CDS 204 233 203 233 PF01535.20 PPR Family 2 31 31 26.0 6.7e-06 1 CL0020
Cotton_A_25303_CDS 303 350 302 351 PF13041.6 PPR_2 Repeat 2 49 50 44.5 1.3e-11 1 CL0020
Cotton_A_25303_CDS 378 401 377 404 PF01535.20 PPR Family 3 26 31 18.0 0.0025 1 CL0020
Cotton_A_37351_CDS 74 135 30 135 PF00583.25 Acetyltransf_1 Family 59 117 117 50.4 2.2e-13 1 CL0257
Cotton_A_09516_CDS 39 164 37 166 PF08240.12 ADH_N Domain 3 107 109 80.9 5.4e-23 1 CL0296
Cotton_A_09516_CDS 208 331 208 342 PF00107.26 ADH_zinc_N Family 1 118 130 84.6 5.7e-24 1 CL0063
Cotton_A_11747_CDS 120 193 120 194 PF03110.14 SBP Domain 1 74 75 107.2 4e-31 1 No_clan
Cotton_A_13097_CDS 53 136 51 162 PF01426.18 BAH Domain 3 87 122 31.4 1.4e-07 1 No_clan
Cotton_A_13097_CDS 365 414 364 414 PF08711.11 Med26 Domain 2 53 53 42.8 3.9e-11 1 No_clan
Cotton_A_18185_CDS 7 67 7 69 PF13921.6 Myb_DNA-bind_6 Domain 1 57 60 49.1 5.1e-13 1 CL0123
Cotton_A_39360_CDS 81 150 80 152 PF04564.15 U-box Domain 2 71 73 76.3 1.5e-21 1 CL0229
Cotton_A_39360_CDS 295 331 293 332 PF00514.23 Arm Repeat 4 40 41 22.0 0.00012 1 CL0020
Cotton_A_21274_CDS 162 356 157 363 PF00931.22 NB-ARC Domain 8 206 252 130.3 6.5e-38 1 CL0023
Cotton_A_09551_CDS 209 469 209 469 PF03000.14 NPH3 Family 1 258 258 290.1 1.6e-86 1 No_clan
Cotton_A_38369_CDS 8 155 1 165 PF02458.15 Transferase Family 24 168 434 106.9 9.6e-31 1 CL0149
Cotton_A_38369_CDS 172 350 162 350 PF02458.15 Transferase Family 251 434 434 97.8 5.6e-28 1 CL0149
Cotton_A_00407_CDS 20 97 6 99 PF00125.24 Histone Domain 51 129 131 48.3 1.2e-12 1 CL0012
Cotton_A_00407_CDS 100 133 100 134 PF16211.5 Histone_H2A_C Family 1 34 35 66.1 1.6e-18 1 No_clan
Cotton_A_07852_CDS 33 319 32 319 PF00069.25 Pkinase Domain 2 264 264 243.9 1.7e-72 1 CL0016
Cotton_A_24935_CDS 36 99 36 99 PF00462.24 Glutaredoxin Domain 1 60 60 53.6 1.9e-14 1 CL0172
Cotton_A_10406_CDS 76 484 35 495 PF00067.22 p450 Domain 40 449 463 224.5 2.3e-66 1 No_clan
Cotton_A_12206_CDS 212 236 212 237 PF00642.24 zf-CCCH Family 2 26 27 37.5 1.5e-09 1 CL0537
Cotton_A_28005_CDS 554 646 551 649 PF00153.27 Mito_carr Family 4 93 97 41.8 7.5e-11 1 No_clan
Cotton_A_28005_CDS 659 737 654 740 PF00153.27 Mito_carr Family 8 93 97 31.0 1.8e-07 1 No_clan
Cotton_A_28005_CDS 745 834 743 835 PF00153.27 Mito_carr Family 3 96 97 73.3 1.2e-20 1 No_clan
Cotton_A_22150_CDS 49 290 48 290 PF03087.14 DUF241 Family 2 234 234 274.7 7.2e-82 1 CL0133
Cotton_A_23649_CDS 38 124 34 135 PF00651.31 BTB Domain 10 98 111 28.6 1.3e-06 1 CL0033
Cotton_A_23649_CDS 212 480 212 480 PF03000.14 NPH3 Family 1 258 258 286.4 2.2e-85 1 No_clan
Cotton_A_11988_CDS 93 175 93 186 PF00355.26 Rieske Domain 1 82 89 66.4 1.6e-18 1 CL0516
Cotton_A_11988_CDS 306 398 306 402 PF08417.12 PaO Family 1 84 88 100.4 4.7e-29 1 No_clan
Cotton_A_09375_CDS 119 191 119 216 PF13649.6 Methyltransf_25 Domain 1 73 97 36.8 4.8e-09 1 CL0063
Cotton_A_00172_CDS 195 249 194 251 PF00849.22 PseudoU_synth_2 Family 2 58 160 29.7 5.9e-07 1 CL0649
Cotton_A_37332_CDS 35 76 34 77 PF08263.12 LRRNT_2 Family 2 40 41 26.0 8.4e-06 1 No_clan
Cotton_A_37332_CDS 326 583 325 585 PF07714.17 Pkinase_Tyr Domain 3 257 259 88.7 3.8e-25 1 CL0016
Cotton_A_24780_CDS 24 76 24 76 PF04431.13 Pec_lyase_N Family 1 56 56 71.4 5.5e-20 1 No_clan
Cotton_A_24780_CDS 196 352 167 352 PF00544.19 Pec_lyase_C Domain 58 211 211 78.2 6.5e-22 1 CL0268
Cotton_A_16862_CDS 139 337 138 337 PF14381.6 EDR1 Family 2 200 200 239.6 2.3e-71 1 CL0125
Cotton_A_16862_CDS 704 953 703 955 PF07714.17 Pkinase_Tyr Domain 2 257 259 216.6 3.5e-64 1 CL0016
Cotton_A_17726_CDS 33 70 30 79 PF16544.5 STAR_dimer Domain 5 42 53 38.1 8.4e-10 1 No_clan
Cotton_A_26325_CDS 122 143 121 143 PF00560.33 LRR_1 Repeat 2 23 23 11.5 0.37 1 CL0022
Cotton_A_26325_CDS 194 216 194 216 PF00560.33 LRR_1 Repeat 1 23 23 11.2 0.48 1 CL0022
Cotton_A_00042_CDS 14 98 12 99 PF03083.16 MtN3_slv Family 3 86 87 94.4 3.2e-27 1 CL0141
Cotton_A_00042_CDS 133 217 133 219 PF03083.16 MtN3_slv Family 1 85 87 89.8 8.5e-26 1 CL0141
Cotton_A_08974_CDS 121 438 119 438 PF01180.21 DHO_dh Domain 3 295 295 322.6 2.1e-96 1 CL0036
Cotton_A_09057_CDS 8 214 2 214 PF00704.28 Glyco_hydro_18 Domain 122 312 312 114.6 7.2e-33 1 CL0058
Cotton_A_09057_CDS 263 371 239 374 PF00069.25 Pkinase Domain 154 258 264 31.7 9.5e-08 1 CL0016
Cotton_A_08936_CDS 244 342 205 344 PF02469.22 Fasciclin Domain 18 125 128 30.9 2.6e-07 1 No_clan
Cotton_A_06173_CDS 85 154 85 154 PF01287.20 eIF-5a Domain 1 69 69 99.3 9.8e-29 1 CL0021
Cotton_A_06822_CDS 24 86 22 89 PF01480.17 PWI Family 3 66 72 28.9 1.1e-06 1 No_clan
Cotton_A_06822_CDS 524 592 524 593 PF00076.22 RRM_1 Domain 1 69 70 63.0 1.7e-17 1 CL0221
Cotton_A_13855_CDS 86 173 86 189 PF14543.6 TAXi_N Domain 1 78 178 47.0 3.3e-12 1 CL0129
Cotton_A_23796_CDS 33 211 32 212 PF04832.12 SOUL Family 2 167 168 132.8 1.3e-38 1 CL0319
Cotton_A_08063_CDS 128 150 125 151 PF00642.24 zf-CCCH Family 4 26 27 37.4 1.7e-09 1 CL0537
Cotton_A_08063_CDS 175 197 172 198 PF00642.24 zf-CCCH Family 4 26 27 35.5 6.3e-09 1 CL0537
Cotton_A_08063_CDS 220 243 218 244 PF00642.24 zf-CCCH Family 3 26 27 38.8 5.8e-10 1 CL0537
Cotton_A_08063_CDS 356 381 355 381 PF00642.24 zf-CCCH Family 2 27 27 26.8 3.3e-06 1 CL0537
Cotton_A_08063_CDS 403 427 401 427 PF00642.24 zf-CCCH Family 3 27 27 34.4 1.4e-08 1 CL0537
Cotton_A_36451_CDS 34 184 2 188 PF00481.21 PP2C Family 45 155 258 34.8 1.3e-08 1 CL0238
Cotton_A_21777_CDS 72 356 72 356 PF13292.6 DXP_synthase_N Family 1 273 273 287.9 6.5e-86 1 CL0254
Cotton_A_21777_CDS 398 555 393 558 PF02779.24 Transket_pyr Domain 8 175 178 91.1 6.4e-26 1 CL0254
Cotton_A_21777_CDS 571 694 571 694 PF02780.20 Transketolase_C Domain 1 124 124 104.5 3.3e-30 1 CL0591
Cotton_A_39556_CDS 332 446 331 449 PF07986.12 TBCC Domain 2 116 120 101.3 2.7e-29 1 CL0391
Cotton_A_27666_CDS 11 54 10 56 PF00319.18 SRF-TF Domain 2 45 48 64.9 3.4e-18 1 No_clan
Cotton_A_29712_CDS 84 255 84 255 PF14543.6 TAXi_N Domain 1 178 178 185.6 9.3e-55 1 CL0129
Cotton_A_29712_CDS 277 419 277 420 PF14541.6 TAXi_C Domain 1 160 161 93.5 1.1e-26 1 CL0129
Cotton_A_10228_CDS 9 86 7 87 PF01423.22 LSM Domain 3 66 67 64.3 6e-18 1 CL0527
Cotton_A_28017_CDS 22 94 16 98 PF02362.21 B3 Family 15 97 101 47.7 1.1e-12 1 CL0405
Cotton_A_28017_CDS 141 229 136 232 PF02362.21 B3 Family 6 98 101 56.2 2.4e-15 1 CL0405
Cotton_A_17167_CDS 41 141 41 160 PF00561.20 Abhydrolase_1 Domain 1 116 257 44.2 1.8e-11 1 CL0028
Cotton_A_16811_CDS 14 466 7 468 PF00232.18 Glyco_hydro_1 Domain 20 451 453 442.3 1.4e-132 1 CL0058
Cotton_A_29393_CDS 18 81 11 82 PF02152.18 FolB Domain 49 110 111 38.9 1e-09 1 CL0334
Cotton_A_28685_CDS 14 271 14 271 PF04278.12 Tic22 Family 1 246 246 383.1 4.8e-115 1 No_clan
Cotton_A_01286_CDS 148 275 145 278 PF04116.13 FA_hydroxylase Family 4 123 133 53.3 3.4e-14 1 No_clan
Cotton_A_40887_CDS 51 143 51 148 PF00295.17 Glyco_hydro_28 Domain 1 92 325 43.6 1.9e-11 1 CL0268
Cotton_A_40887_CDS 146 357 141 366 PF00295.17 Glyco_hydro_28 Domain 119 323 325 247.7 1.5e-73 1 CL0268
Cotton_A_33781_CDS 60 99 58 102 PF01344.25 Kelch_1 Repeat 3 35 46 25.7 6e-06 1 CL0186
Cotton_A_12093_CDS 86 118 85 118 PF07719.17 TPR_2 Repeat 2 34 34 23.6 3.4e-05 1 CL0020
Cotton_A_12093_CDS 201 233 200 233 PF07719.17 TPR_2 Repeat 2 34 34 25.0 1.2e-05 1 CL0020
Cotton_A_12093_CDS 372 435 372 435 PF00226.31 DnaJ Domain 1 63 63 90.4 5.7e-26 1 CL0392
Cotton_A_26719_CDS 80 129 78 129 PF00847.20 AP2 Domain 3 54 54 53.6 1.9e-14 1 CL0081
Cotton_A_22683_CDS 207 442 195 451 PF00201.18 UDPGT Family 193 417 499 104.1 8.2e-30 1 CL0113
Cotton_A_14641_CDS 34 463 34 473 PF00067.22 p450 Domain 1 441 463 212.5 9.8e-63 1 No_clan
Cotton_A_39122_CDS 111 335 42 378 PF03097.18 BRO1 Domain 84 299 389 43.8 1.4e-11 1 No_clan
Cotton_A_03300_CDS 13 364 12 365 PF05282.11 AAR2 Family 2 351 352 326.3 2.7e-97 1 No_clan
Cotton_A_28436_CDS 68 117 68 117 PF13041.6 PPR_2 Repeat 1 50 50 30.4 3.2e-07 1 CL0020
Cotton_A_28436_CDS 172 196 172 200 PF01535.20 PPR Family 1 25 31 24.2 2.6e-05 1 CL0020
Cotton_A_28436_CDS 204 230 203 232 PF01535.20 PPR Family 2 28 31 21.4 0.00019 1 CL0020
Cotton_A_28436_CDS 302 348 301 350 PF13041.6 PPR_2 Repeat 2 48 50 48.7 6.3e-13 1 CL0020
Cotton_A_28436_CDS 377 402 375 404 PF01535.20 PPR Family 3 28 31 10.6 0.57 1 CL0020
Cotton_A_28436_CDS 446 474 445 474 PF01535.20 PPR Family 3 31 31 9.5 1.3 1 CL0020
Cotton_A_09997_CDS 24 87 22 87 PF00808.23 CBFD_NFYB_HMF Domain 3 65 65 73.8 1e-20 1 CL0012
Cotton_A_07662_CDS 266 283 266 284 PF02493.20 MORN Repeat 1 18 23 16.9 0.0042 1 CL0251
Cotton_A_07662_CDS 289 311 289 311 PF02493.20 MORN Repeat 1 23 23 27.3 2e-06 1 CL0251
Cotton_A_07662_CDS 312 334 312 334 PF02493.20 MORN Repeat 1 23 23 25.5 7.8e-06 1 CL0251
Cotton_A_07662_CDS 335 357 335 357 PF02493.20 MORN Repeat 1 23 23 22.4 7.5e-05 1 CL0251
Cotton_A_07662_CDS 358 380 358 380 PF02493.20 MORN Repeat 1 23 23 25.9 5.7e-06 1 CL0251
Cotton_A_07662_CDS 381 402 381 403 PF02493.20 MORN Repeat 1 22 23 24.5 1.6e-05 1 CL0251
Cotton_A_07662_CDS 404 424 404 426 PF02493.20 MORN Repeat 1 21 23 24.2 2.1e-05 1 CL0251
Cotton_A_08297_CDS 136 273 136 274 PF11708.8 Slu7 Domain 1 137 269 132.8 1.9e-38 1 No_clan
Cotton_A_00712_CDS 7 88 3 89 PF01301.19 Glyco_hydro_35 Domain 235 315 316 102.7 2.9e-29 1 CL0058
Cotton_A_00712_CDS 96 167 96 167 PF17834.1 GHD Domain 1 72 72 96.4 7.3e-28 1 CL0369
Cotton_A_11233_CDS 48 75 47 84 PF04068.15 RLI Family 2 29 35 47.0 1.7e-12 1 CL0344
Cotton_A_11233_CDS 103 229 103 229 PF04034.13 Ribo_biogen_C Domain 1 127 127 173.0 2e-51 1 No_clan
Cotton_A_28940_CDS 53 481 51 484 PF00083.24 Sugar_tr Family 3 449 452 325.2 6.4e-97 1 CL0015
Cotton_A_19781_CDS 23 56 16 56 PF00187.19 Chitin_bind_1 Domain 6 38 38 35.6 9.2e-09 1 No_clan
Cotton_A_19781_CDS 70 224 70 229 PF00182.19 Glyco_hydro_19 Domain 1 159 232 156.5 1e-45 1 CL0037
Cotton_A_19781_CDS 229 276 224 276 PF00182.19 Glyco_hydro_19 Domain 185 232 232 32.8 6.3e-08 1 CL0037
Cotton_A_40224_CDS 215 236 214 238 PF13833.6 EF-hand_8 Domain 32 53 55 18.0 0.0019 1 CL0220
Cotton_A_40224_CDS 248 271 245 272 PF00036.32 EF-hand_1 Domain 5 28 29 28.9 4.7e-07 1 CL0220
Cotton_A_40224_CDS 414 466 414 466 PF13833.6 EF-hand_8 Domain 2 55 55 39.8 3e-10 1 CL0220
Cotton_A_06432_CDS 63 342 62 342 PF02309.16 AUX_IAA Family 2 237 237 289.4 2.4e-86 1 CL0072
Cotton_A_34980_CDS 95 500 95 500 PF03372.23 Exo_endo_phos Domain 1 233 233 66.6 2.3e-18 1 CL0530
Cotton_A_38781_CDS 77 158 76 159 PF14159.6 CAAD Domain 2 83 85 104.1 2.7e-30 1 No_clan
Cotton_A_05346_CDS 33 380 30 380 PF00155.21 Aminotran_1_2 Domain 4 363 363 165.7 1.7e-48 1 CL0061
Cotton_A_19985_CDS 186 444 175 444 PF07714.17 Pkinase_Tyr Domain 19 259 259 93.1 1.7e-26 1 CL0016
Cotton_A_16978_CDS 6 45 4 48 PF00646.33 F-box Domain 4 43 48 19.6 0.00062 1 CL0271
Cotton_A_16978_CDS 92 146 91 147 PF01344.25 Kelch_1 Repeat 2 45 46 32.8 3.9e-08 1 CL0186
Cotton_A_16978_CDS 149 194 149 195 PF01344.25 Kelch_1 Repeat 1 45 46 43.5 1.7e-11 1 CL0186
Cotton_A_16978_CDS 277 330 277 331 PF01344.25 Kelch_1 Repeat 1 45 46 22.6 6e-05 1 CL0186
Cotton_A_24748_CDS 17 68 16 68 PF00847.20 AP2 Domain 2 54 54 57.8 9.4e-16 1 CL0081
Cotton_A_03413_CDS 6 79 4 79 PF02798.20 GST_N Domain 3 76 76 57.0 1.8e-15 1 CL0172
Cotton_A_03413_CDS 100 202 100 203 PF00043.25 GST_C Domain 1 92 93 36.5 4.2e-09 1 CL0497
Cotton_A_31574_CDS 178 303 178 304 PF00134.23 Cyclin_N Domain 1 126 127 147.4 1.7e-43 1 CL0065
Cotton_A_31574_CDS 306 421 306 423 PF02984.19 Cyclin_C Domain 1 117 119 117.8 2.8e-34 1 CL0065
Cotton_A_25796_CDS 43 245 43 246 PF16575.5 CLP1_P Domain 1 187 188 127.3 5.9e-37 1 CL0023
Cotton_A_10834_CDS 41 400 40 400 PF00155.21 Aminotran_1_2 Domain 2 363 363 294.8 9.4e-88 1 CL0061
Cotton_A_17073_CDS 25 51 12 52 PF00400.32 WD40 Repeat 12 37 38 20.1 0.00082 1 CL0186
Cotton_A_17073_CDS 69 98 62 98 PF00400.32 WD40 Repeat 9 37 38 12.7 0.19 1 CL0186
Cotton_A_17073_CDS 112 141 104 141 PF00400.32 WD40 Repeat 10 38 38 19.7 0.0011 1 CL0186
Cotton_A_17073_CDS 234 273 230 273 PF00400.32 WD40 Repeat 5 38 38 15.3 0.027 1 CL0186
Cotton_A_04802_CDS 32 79 32 79 PF00249.31 Myb_DNA-binding Domain 1 46 46 47.5 1.5e-12 1 CL0123
Cotton_A_04802_CDS 85 128 85 129 PF00249.31 Myb_DNA-binding Domain 1 44 46 51.2 1.1e-13 1 CL0123
Cotton_A_01456_CDS 23 94 23 95 PF04564.15 U-box Domain 1 72 73 73.2 1.4e-20 1 CL0229
Cotton_A_02359_CDS 12 90 12 90 PF00347.23 Ribosomal_L6 Domain 1 76 76 44.7 1.6e-11 1 No_clan
Cotton_A_02359_CDS 103 181 102 181 PF00347.23 Ribosomal_L6 Domain 2 76 76 47.8 1.7e-12 1 No_clan
Cotton_A_36968_CDS 27 68 24 73 PF17780.1 OCRE Domain 4 47 52 39.4 4.6e-10 1 No_clan
Cotton_A_36968_CDS 436 476 434 478 PF01585.23 G-patch Family 3 43 45 27.8 1.7e-06 1 CL0449
Cotton_A_06905_CDS 43 504 41 510 PF00067.22 p450 Domain 3 456 463 288.2 1.1e-85 1 No_clan
Cotton_A_16941_CDS 106 236 103 236 PF14543.6 TAXi_N Domain 55 178 178 97.1 1.4e-27 1 CL0129
Cotton_A_16941_CDS 275 435 275 436 PF14541.6 TAXi_C Domain 1 160 161 189.9 2.4e-56 1 CL0129
Cotton_A_33641_CDS 30 100 29 101 PF07983.13 X8 Domain 2 75 76 75.4 4.3e-21 1 No_clan
Cotton_A_18282_CDS 68 159 68 160 PF03101.15 FAR1 Domain 1 89 90 80.6 1.1e-22 1 CL0274
Cotton_A_18282_CDS 291 382 291 385 PF10551.9 MULE Domain 1 93 96 57.8 1.1e-15 1 CL0219
Cotton_A_18282_CDS 572 599 562 600 PF04434.17 SWIM Domain 12 39 40 32.7 4.1e-08 1 No_clan
Cotton_A_37566_CDS 18 182 18 182 PF03398.14 Ist1 Family 1 164 164 214.4 8.4e-64 1 No_clan
Cotton_A_06793_CDS 14 78 13 78 PF00808.23 CBFD_NFYB_HMF Domain 2 65 65 90.1 8e-26 1 CL0012
Cotton_A_10915_CDS 10 77 10 81 PF04564.15 U-box Domain 1 68 73 66.7 1.5e-18 1 CL0229
Cotton_A_15251_CDS 80 324 54 330 PF00481.21 PP2C Family 35 250 258 141.7 3.1e-41 1 CL0238
Cotton_A_25648_CDS 174 221 174 223 PF13041.6 PPR_2 Repeat 1 48 50 40.1 3e-10 1 CL0020
Cotton_A_25648_CDS 248 277 247 277 PF01535.20 PPR Family 2 31 31 13.0 0.098 1 CL0020
Cotton_A_25648_CDS 279 327 279 328 PF13041.6 PPR_2 Repeat 1 49 50 58.3 6.5e-16 1 CL0020
Cotton_A_25648_CDS 353 379 352 380 PF01535.20 PPR Family 2 28 31 9.9 0.9 1 CL0020
Cotton_A_05295_CDS 46 424 40 430 PF00999.21 Na_H_Exchanger Family 3 374 381 148.8 1.9e-43 1 CL0064
Cotton_A_09737_CDS 83 158 83 158 PF14829.6 GPAT_N Domain 1 76 76 112.9 5.3e-33 1 No_clan
Cotton_A_09737_CDS 200 351 196 355 PF01553.21 Acyltransferase Family 5 131 135 58.0 7.4e-16 1 CL0228
Cotton_A_04445_CDS 10 48 10 57 PF14215.6 bHLH-MYC_N Family 1 41 175 32.4 1.1e-07 1 CL0161
Cotton_A_10259_CDS 44 437 20 437 PF01222.17 ERG4_ERG24 Family 45 432 432 294.8 9.8e-88 1 CL0115
Cotton_A_19326_CDS 29 301 28 302 PF00248.21 Aldo_ket_red Domain 2 292 294 175.3 1.6e-51 1 No_clan
Cotton_A_23935_CDS 11 127 8 129 PF01873.17 eIF-5_eIF-2B Family 4 115 117 127.5 2.2e-37 1 CL0123
Cotton_A_23935_CDS 369 447 368 447 PF02020.18 W2 Family 2 79 79 70.8 7.6e-20 1 CL0020
Cotton_A_09053_CDS 21 84 19 85 PF00690.26 Cation_ATPase_N Domain 3 68 69 44.3 1e-11 1 No_clan
Cotton_A_09053_CDS 134 311 132 312 PF00122.20 E1-E2_ATPase Family 4 180 181 161.4 1.6e-47 1 No_clan
Cotton_A_09053_CDS 328 605 328 605 PF00702.26 Hydrolase Domain 1 210 210 57.1 3.1e-15 1 CL0137
Cotton_A_07562_CDS 55 398 55 404 PF00067.22 p450 Domain 1 351 463 193.5 5.7e-57 1 No_clan
Cotton_A_31356_CDS 34 239 34 239 PF00804.25 Syntaxin Domain 1 200 200 220.1 2.1e-65 1 CL0445
Cotton_A_31356_CDS 241 291 240 292 PF05739.19 SNARE Family 2 52 53 65.6 2.9e-18 1 No_clan
Cotton_A_15076_CDS 286 627 285 628 PF03081.15 Exo70 Family 2 375 376 258.6 9e-77 1 CL0295
Cotton_A_15827_CDS 54 646 54 648 PF00012.20 HSP70 Family 1 597 599 908.3 1.7e-273 1 CL0108
Cotton_A_30350_CDS 26 130 20 139 PF02996.17 Prefoldin Coiled-coil 7 110 120 73.4 1.4e-20 1 CL0200
Cotton_A_29058_CDS 118 165 117 187 PF01842.25 ACT Domain 2 52 67 36.8 2.4e-09 1 CL0070
Cotton_A_07003_CDS 209 567 208 570 PF03081.15 Exo70 Family 2 373 376 373.7 1e-111 1 CL0295
Cotton_A_12386_CDS 245 428 244 428 PF11721.8 Malectin Domain 2 165 165 141.9 1.9e-41 1 CL0202
Cotton_A_12386_CDS 502 769 500 771 PF00069.25 Pkinase Domain 3 260 264 159.1 1.3e-46 1 CL0016
Cotton_A_02915_CDS 31 366 30 380 PF00083.24 Sugar_tr Family 2 344 452 325.7 4.7e-97 1 CL0015
Cotton_A_02915_CDS 448 553 424 554 PF00083.24 Sugar_tr Family 346 451 452 98.2 5e-28 1 CL0015
Cotton_A_27273_CDS 11 46 10 50 PF00646.33 F-box Domain 4 39 48 21.2 0.00019 1 CL0271
Cotton_A_17596_CDS 154 358 154 358 PF07847.12 PCO_ADO Family 1 201 201 250.4 9.8e-75 1 CL0029
Cotton_A_16875_CDS 15 116 15 116 PF01990.17 ATP-synt_F Family 1 91 91 101.7 2.1e-29 1 No_clan
Cotton_A_23438_CDS 261 290 261 296 PF13176.6 TPR_7 Repeat 1 30 36 21.9 0.00012 1 CL0020
Cotton_A_23438_CDS 305 334 303 335 PF13181.6 TPR_8 Repeat 4 33 34 12.9 0.1 1 CL0020
Cotton_A_23438_CDS 424 498 424 500 PF13424.6 TPR_12 Repeat 1 75 77 35.3 1e-08 1 CL0020
Cotton_A_23438_CDS 595 667 592 668 PF13424.6 TPR_12 Repeat 4 76 77 40.0 3.6e-10 1 CL0020
Cotton_A_14206_CDS 160 394 160 447 PF00069.25 Pkinase Domain 1 212 264 59.9 2.4e-16 1 CL0016
Cotton_A_29846_CDS 57 118 57 118 PF04818.13 CTD_bind Family 1 63 63 64.3 1.4e-17 1 No_clan
Cotton_A_26628_CDS 31 76 30 76 PF08263.12 LRRNT_2 Family 2 41 41 39.5 5.2e-10 1 No_clan
Cotton_A_26628_CDS 239 253 237 254 PF13516.6 LRR_6 Repeat 3 16 24 9.0 1.5 1 CL0022
Cotton_A_26628_CDS 291 347 288 347 PF13855.6 LRR_8 Repeat 5 61 61 28.7 8.4e-07 1 CL0022
Cotton_A_26628_CDS 407 466 406 466 PF13855.6 LRR_8 Repeat 2 61 61 40.0 2.4e-10 1 CL0022
Cotton_A_26628_CDS 600 657 598 658 PF13855.6 LRR_8 Repeat 3 60 61 29.3 5.2e-07 1 CL0022
Cotton_A_33475_CDS 1 176 1 176 PF00227.26 Proteasome Domain 10 190 190 136.2 9e-40 1 CL0052
Cotton_A_26916_CDS 122 161 121 162 PF01693.16 Cauli_VI Family 3 42 44 29.3 7.6e-07 1 No_clan
Cotton_A_07594_CDS 95 413 95 413 PF05623.12 DUF789 Family 1 294 294 340.1 1.4e-101 1 No_clan
Cotton_A_03434_CDS 40 120 37 156 PF05687.13 BES1_N Family 4 86 152 118.0 4.7e-34 1 No_clan
Cotton_A_29818_CDS 163 427 163 427 PF05705.14 DUF829 Domain 1 241 241 227.9 1.6e-67 1 CL0028
Cotton_A_05023_CDS 15 175 15 176 PF00071.22 Ras Domain 1 161 162 204.8 6e-61 1 CL0023
Cotton_A_05926_CDS 28 65 28 65 PF13923.6 zf-C3HC4_2 Domain 1 40 40 32.2 6.8e-08 1 CL0229
Cotton_A_05926_CDS 322 400 322 401 PF13771.6 zf-HC5HC2H Domain 1 89 90 39.6 4.7e-10 1 CL0390
Cotton_A_05926_CDS 460 529 452 529 PF00533.26 BRCT Family 15 79 79 32.7 7.3e-08 1 CL0459
Cotton_A_36594_CDS 11 261 9 262 PF00335.20 Tetraspanin Family 4 228 229 95.5 3.7e-27 1 CL0347
Cotton_A_33996_CDS 62 117 60 117 PF13855.6 LRR_8 Repeat 6 61 61 33.0 3.8e-08 1 CL0022
Cotton_A_02964_CDS 13 80 12 80 PF01423.22 LSM Domain 2 67 67 72.6 1.5e-20 1 CL0527
Cotton_A_10445_CDS 279 637 278 638 PF03081.15 Exo70 Family 2 375 376 419.4 1.2e-125 1 CL0295
Cotton_A_05414_CDS 4 67 1 73 PF03080.15 Neprosin Family 52 115 222 67.8 8.2e-19 1 No_clan
Cotton_A_13828_CDS 107 593 107 601 PF03141.16 Methyltransf_29 Family 1 490 506 711.7 4.6e-214 1 CL0063
Cotton_A_07899_CDS 75 138 70 142 PF00111.27 Fer2 Domain 7 74 78 45.1 7e-12 1 CL0486
Cotton_A_37135_CDS 107 150 106 154 PF00847.20 AP2 Domain 2 50 54 25.1 1.6e-05 1 CL0081
Cotton_A_28651_CDS 51 354 51 358 PF01255.19 Prenyltransf Family 1 220 224 238.5 5.9e-71 1 No_clan
Cotton_A_27838_CDS 25 65 24 65 PF08263.12 LRRNT_2 Family 2 41 41 34.0 2.6e-08 1 No_clan
Cotton_A_27838_CDS 117 176 115 176 PF13855.6 LRR_8 Repeat 3 61 61 35.5 6.4e-09 1 CL0022
Cotton_A_27838_CDS 189 210 188 210 PF00560.33 LRR_1 Repeat 2 23 23 12.0 0.25 1 CL0022
Cotton_A_27838_CDS 360 623 355 625 PF00069.25 Pkinase Domain 7 260 264 92.5 2.7e-26 1 CL0016
Cotton_A_30544_CDS 32 172 32 182 PF03140.15 DUF247 Family 1 153 397 124.0 8.7e-36 1 No_clan
Cotton_A_21348_CDS 4 103 4 107 PF03195.14 LOB Family 1 95 99 85.9 2.1e-24 1 No_clan
Cotton_A_40225_CDS 6 91 5 101 PF12796.7 Ank_2 Repeat 2 73 83 35.0 1.6e-08 1 CL0465
Cotton_A_20590_CDS 1 776 1 776 PF05695.12 DUF825 Family 713 1486 1486 1718.9 0 1 No_clan
Cotton_A_20590_CDS 926 1109 926 1110 PF00004.29 AAA Domain 1 131 132 32.1 1.3e-07 1 CL0023
Cotton_A_17529_CDS 28 282 28 282 PF00069.25 Pkinase Domain 1 264 264 256.8 2.1e-76 1 CL0016
Cotton_A_17529_CDS 336 392 336 392 PF03822.14 NAF Domain 1 54 54 78.9 2.4e-22 1 CL0573
Cotton_A_11208_CDS 68 105 68 105 PF01753.18 zf-MYND Domain 1 38 38 37.6 1.7e-09 1 CL0175
Cotton_A_11208_CDS 422 723 422 723 PF00443.29 UCH Family 1 257 257 144.9 3e-42 1 CL0125
Cotton_A_00495_CDS 851 1184 850 1184 PF00632.25 HECT Domain 2 307 307 297.7 1.1e-88 1 CL0552
Cotton_A_10313_CDS 1 414 1 414 PF06219.12 DUF1005 Family 1 437 437 521.1 2.5e-156 1 No_clan
Cotton_A_00250_CDS 29 256 28 257 PF00230.20 MIP Family 2 226 227 277.2 1e-82 1 No_clan
Cotton_A_25410_CDS 216 442 215 442 PF01603.20 B56 Family 189 415 415 343.5 1.7e-102 1 CL0020
Cotton_A_17163_CDS 62 246 27 248 PF10248.9 Mlf1IP Family 10 170 172 65.5 5.6e-18 1 No_clan
Cotton_A_14903_CDS 161 210 160 210 PF00249.31 Myb_DNA-binding Domain 2 46 46 34.3 2e-08 1 CL0123
Cotton_A_00673_CDS 10 77 2 78 PF02519.14 Auxin_inducible Family 22 89 90 88.6 2.3e-25 1 No_clan
Cotton_A_20983_CDS 23 211 20 216 PF04450.12 BSP Family 4 199 207 143.0 1e-41 1 CL0126
Cotton_A_25885_CDS 31 100 30 101 PF00173.28 Cyt-b5 Domain 3 73 74 84.3 4.9e-24 1 No_clan
Cotton_A_33408_CDS 7 36 7 36 PF17814.1 LisH_TPL Domain 1 30 30 59.5 1.7e-16 1 CL0561
Cotton_A_33408_CDS 216 241 202 241 PF00400.32 WD40 Repeat 13 38 38 22.6 0.00014 1 CL0186
Cotton_A_33408_CDS 262 290 257 291 PF00400.32 WD40 Repeat 10 37 38 28.0 2.7e-06 1 CL0186
Cotton_A_33408_CDS 295 332 295 333 PF00400.32 WD40 Repeat 1 36 38 19.2 0.0016 1 CL0186
Cotton_A_33408_CDS 338 376 338 376 PF00400.32 WD40 Repeat 1 38 38 29.3 1e-06 1 CL0186
Cotton_A_07434_CDS 13 46 7 47 PF00400.32 WD40 Repeat 5 37 38 27.9 2.8e-06 1 CL0186
Cotton_A_07434_CDS 60 94 56 94 PF00400.32 WD40 Repeat 6 38 38 22.8 0.00012 1 CL0186
Cotton_A_07434_CDS 182 218 180 218 PF00400.32 WD40 Repeat 3 38 38 20.2 0.00079 1 CL0186
Cotton_A_04855_CDS 165 202 164 202 PF00400.32 WD40 Repeat 2 38 38 40.8 2.5e-10 1 CL0186
Cotton_A_04855_CDS 208 244 206 244 PF00400.32 WD40 Repeat 3 38 38 23.5 7e-05 1 CL0186
Cotton_A_04855_CDS 249 286 248 286 PF00400.32 WD40 Repeat 2 38 38 27.9 2.9e-06 1 CL0186
Cotton_A_04855_CDS 295 328 289 328 PF00400.32 WD40 Repeat 6 38 38 23.5 7.3e-05 1 CL0186
Cotton_A_04855_CDS 432 461 414 461 PF00400.32 WD40 Repeat 12 38 38 13.2 0.13 1 CL0186
Cotton_A_08506_CDS 196 378 192 380 PF00544.19 Pec_lyase_C Domain 29 209 211 70.5 1.5e-19 1 CL0268
Cotton_A_31117_CDS 41 422 40 422 PF00155.21 Aminotran_1_2 Domain 2 363 363 339.6 2.2e-101 1 CL0061
Cotton_A_38039_CDS 99 258 99 258 PF14299.6 PP2 Family 1 146 146 161.1 1.7e-47 1 No_clan
Cotton_A_04061_CDS 107 164 105 168 PF07714.17 Pkinase_Tyr Domain 4 66 259 28.9 6.3e-07 1 CL0016
Cotton_A_04061_CDS 169 282 163 347 PF00069.25 Pkinase Domain 94 201 264 86.6 1.8e-24 1 CL0016
Cotton_A_21000_CDS 270 402 110 445 PF00201.18 UDPGT Family 263 382 499 79.9 1.7e-22 1 CL0113
Cotton_A_21703_CDS 177 418 176 418 PF04788.12 DUF620 Family 2 243 243 390.7 2.2e-117 1 No_clan
Cotton_A_04536_CDS 450 576 443 716 PF08007.12 Cupin_4 Family 95 214 319 88.2 6.6e-25 1 CL0029
Cotton_A_15106_CDS 8 442 7 445 PF02458.15 Transferase Family 2 431 434 342.6 2.8e-102 1 CL0149
Cotton_A_01246_CDS 400 552 399 555 PF02453.17 Reticulon Family 2 153 157 78.6 4.8e-22 1 CL0484
Cotton_A_29359_CDS 6 77 4 77 PF02798.20 GST_N Domain 3 76 76 62.5 3.6e-17 1 CL0172
Cotton_A_29359_CDS 106 193 83 194 PF00043.25 GST_C Domain 17 92 93 42.2 7.2e-11 1 CL0497
Cotton_A_25785_CDS 40 106 40 107 PF16209.5 PhoLip_ATPase_N Family 1 66 67 76.8 7.3e-22 1 No_clan
Cotton_A_25785_CDS 539 624 520 627 PF13246.6 Cation_ATPase Family 19 87 91 37.6 1.7e-09 1 CL0137
Cotton_A_25785_CDS 891 1141 891 1142 PF16212.5 PhoLip_ATPase_C Family 1 248 249 269.7 2.7e-80 1 No_clan
Cotton_A_15997_CDS 271 379 270 380 PF01399.27 PCI Domain 2 104 105 68.9 4.5e-19 1 CL0123
Cotton_A_15997_CDS 385 417 385 417 PF18098.1 RPN5_C Domain 1 33 33 52.5 3.7e-14 1 No_clan
Cotton_A_16666_CDS 2 44 1 45 PF00646.33 F-box Domain 5 47 48 28.1 1.3e-06 1 CL0271
Cotton_A_29050_CDS 2 117 2 117 PF02365.15 NAM Family 1 126 126 92.2 4.6e-26 1 No_clan
Cotton_A_20704_CDS 51 198 48 198 PF04043.15 PMEI Domain 5 154 154 94.1 1.1e-26 1 No_clan
Cotton_A_20704_CDS 246 337 246 338 PF01095.19 Pectinesterase Family 1 92 298 107.7 4.4e-31 1 CL0268
Cotton_A_18872_CDS 8 135 8 135 PF10639.9 TMEM234 Family 1 116 116 89.2 1.8e-25 1 CL0184
Cotton_A_04940_CDS 16 117 13 118 PF13947.6 GUB_WAK_bind Domain 4 105 106 68.8 5.7e-19 1 No_clan
Cotton_A_12918_CDS 131 175 129 176 PF00249.31 Myb_DNA-binding Domain 3 45 46 48.3 8.3e-13 1 CL0123
Cotton_A_02561_CDS 1 132 1 132 PF00125.24 Histone Domain 1 131 131 181.2 1e-53 1 CL0012
Cotton_A_23404_CDS 108 246 59 246 PF00583.25 Acetyltransf_1 Family 42 117 117 54.7 1e-14 1 CL0257
Cotton_A_10396_CDS 13 141 13 141 PF00416.22 Ribosomal_S13 Family 1 128 128 195.3 4.2e-58 1 CL0303
Cotton_A_34177_CDS 19 249 17 249 PF01182.20 Glucosamine_iso Domain 3 225 225 248.1 9.2e-74 1 CL0246
Cotton_A_38671_CDS 1 36 1 55 PF03105.19 SPX Domain 1 33 384 40.4 3.5e-10 1 No_clan
Cotton_A_38671_CDS 123 171 117 172 PF03105.19 SPX Domain 335 383 384 41.9 1.2e-10 1 No_clan
Cotton_A_23750_CDS 3 71 3 71 PF15159.6 PIG-Y Family 1 70 70 63.3 3e-17 1 No_clan
Cotton_A_35515_CDS 36 108 24 140 PF08240.12 ADH_N Domain 25 82 109 58.5 5e-16 1 CL0296
Cotton_A_35515_CDS 182 302 182 312 PF00107.26 ADH_zinc_N Family 1 118 130 74.9 5.5e-21 1 CL0063
Cotton_A_17245_CDS 76 335 76 336 PF02485.21 Branch Family 1 246 247 258.0 8.7e-77 1 CL0110
Cotton_A_30790_CDS 18 252 3 282 PF05701.11 WEMBL Family 284 530 562 46.8 1.8e-12 1 No_clan
Cotton_A_23380_CDS 159 309 158 310 PF02544.16 Steroid_dh Family 2 148 150 100.1 1.1e-28 1 CL0115
Cotton_A_21454_CDS 393 640 390 646 PF07714.17 Pkinase_Tyr Domain 6 253 259 124.7 3.8e-36 1 CL0016
Cotton_A_21454_CDS 671 736 670 736 PF04564.15 U-box Domain 2 67 73 60.6 1.2e-16 1 CL0229
Cotton_A_22606_CDS 7 271 5 274 PF00069.25 Pkinase Domain 4 260 264 174.3 3e-51 1 CL0016
Cotton_A_26207_CDS 93 236 93 236 PF00056.23 Ldh_1_N Family 1 141 141 160.0 3.5e-47 1 CL0063
Cotton_A_26207_CDS 238 403 238 404 PF02866.18 Ldh_1_C Domain 1 166 167 159.3 7.9e-47 1 CL0341
Cotton_A_32441_CDS 266 479 262 481 PF00069.25 Pkinase Domain 55 260 264 96.6 1.5e-27 1 CL0016
Cotton_A_20032_CDS 75 177 73 178 PF03754.13 DUF313 Family 3 112 113 72.4 3.4e-20 1 CL0405
Cotton_A_23782_CDS 31 531 31 534 PF00118.24 Cpn60_TCP1 Family 1 488 491 492.0 1.8e-147 1 No_clan
Cotton_A_20220_CDS 65 185 65 185 PF12755.7 Vac14_Fab1_bd Family 1 97 97 113.0 7.3e-33 1 CL0020
Cotton_A_20220_CDS 453 632 452 632 PF11916.8 Vac14_Fig4_bd Domain 2 179 179 232.3 2.9e-69 1 No_clan
Cotton_A_03797_CDS 14 98 8 111 PF00201.18 UDPGT Family 329 409 499 29.4 3.4e-07 1 CL0113
Cotton_A_03939_CDS 96 146 95 147 PF00847.20 AP2 Domain 2 53 54 53.9 1.6e-14 1 CL0081
Cotton_A_34332_CDS 3 36 3 37 PF04419.14 4F5 Family 1 37 38 24.2 4.7e-05 1 CL0361
Cotton_A_34332_CDS 39 76 39 76 PF12907.7 zf-met2 Family 1 38 38 72.8 1.8e-20 1 CL0361
Cotton_A_39188_CDS 9 163 8 164 PF00722.21 Glyco_hydro_16 Domain 2 154 177 95.6 2.3e-27 1 CL0004
Cotton_A_25479_CDS 64 120 62 120 PF11250.8 FAF Family 3 54 54 69.5 2.1e-19 1 No_clan
Cotton_A_04806_CDS 368 514 365 514 PF13890.6 Rab3-GTPase_cat Family 4 163 163 182.0 6.1e-54 1 No_clan
Cotton_A_21537_CDS 76 295 76 296 PF07859.13 Abhydrolase_3 Domain 1 210 211 185.4 1.2e-54 1 CL0028
Cotton_A_01052_CDS 27 114 21 132 PF00651.31 BTB Domain 10 97 111 33.6 3.6e-08 1 CL0033
Cotton_A_01052_CDS 214 481 214 481 PF03000.14 NPH3 Family 1 258 258 311.0 7.2e-93 1 No_clan
Cotton_A_15502_CDS 247 410 211 414 PF00201.18 UDPGT Family 269 419 499 75.6 3.5e-21 1 CL0113
Cotton_A_27962_CDS 56 164 56 165 PF14226.6 DIOX_N Family 2 117 118 77.5 1.3e-21 1 CL0029
Cotton_A_27962_CDS 209 312 207 313 PF03171.20 2OG-FeII_Oxy Domain 4 100 101 91.3 4.5e-26 1 CL0029
Cotton_A_31531_CDS 57 303 57 304 PF00141.23 peroxidase Domain 1 228 229 238.5 7.5e-71 1 CL0617
Cotton_A_39124_CDS 14 233 13 233 PF00230.20 MIP Family 2 227 227 255.2 5.7e-76 1 No_clan
Cotton_A_08147_CDS 583 630 582 630 PF02042.15 RWP-RK Family 2 49 49 89.5 9.9e-26 1 No_clan
Cotton_A_08147_CDS 876 956 875 957 PF00564.24 PB1 Domain 2 83 84 65.7 2.7e-18 1 CL0072
Cotton_A_13627_CDS 41 182 39 187 PF01625.21 PMSR Family 3 146 153 206.4 2.3e-61 1 No_clan
Cotton_A_18538_CDS 9 154 8 155 PF00179.26 UQ_con Domain 2 139 140 130.8 2.6e-38 1 CL0208
Cotton_A_26077_CDS 21 91 19 102 PF00564.24 PB1 Domain 3 71 84 34.2 1.8e-08 1 CL0072
Cotton_A_26077_CDS 179 238 173 238 PF03108.15 DBD_Tnp_Mut Family 8 67 67 52.2 4.4e-14 1 CL0274
Cotton_A_26077_CDS 371 460 369 462 PF10551.9 MULE Domain 3 93 96 45.6 7.2e-12 1 CL0219
Cotton_A_26077_CDS 624 653 609 654 PF04434.17 SWIM Domain 3 39 40 38.3 7.5e-10 1 No_clan
Cotton_A_29385_CDS 1 68 1 100 PF00421.19 PSII Family 1 68 507 123.3 1.1e-35 1 No_clan
Cotton_A_34212_CDS 31 89 31 93 PF07651.16 ANTH Domain 1 56 277 52.5 3.4e-14 1 CL0009
Cotton_A_34212_CDS 104 327 102 328 PF07651.16 ANTH Domain 53 276 277 190.9 2.2e-56 1 CL0009
Cotton_A_40150_CDS 2 126 1 126 PF02365.15 NAM Family 2 126 126 118.8 2.6e-34 1 No_clan
Cotton_A_39317_CDS 19 38 18 38 PF00612.27 IQ Motif 2 21 21 21.4 0.00014 1 CL0220
Cotton_A_07478_CDS 180 326 179 326 PF03031.18 NIF Family 2 156 156 131.2 2.7e-38 1 CL0137
Cotton_A_36851_CDS 247 305 247 305 PF02176.18 zf-TRAF Family 1 60 60 44.4 1.9e-11 1 CL0389
Cotton_A_38771_CDS 36 188 35 200 PF01582.20 TIR Family 3 163 176 56.9 2.1e-15 1 CL0173
Cotton_A_13809_CDS 45 187 44 188 PF03208.19 PRA1 Family 2 142 143 161.7 8.1e-48 1 No_clan
Cotton_A_13656_CDS 1 66 1 83 PF03248.13 Rer1 Family 9 74 171 81.7 5e-23 1 No_clan
Cotton_A_33925_CDS 68 172 68 184 PF14226.6 DIOX_N Family 1 103 118 70.9 1.5e-19 1 CL0029
Cotton_A_33925_CDS 226 308 224 310 PF03171.20 2OG-FeII_Oxy Domain 7 99 101 57.8 1.2e-15 1 CL0029
Cotton_A_09531_CDS 14 102 13 102 PF04504.14 DUF573 Family 2 95 95 61.8 7.3e-17 1 CL0123
Cotton_A_36512_CDS 85 362 84 362 PF07714.17 Pkinase_Tyr Domain 2 259 259 196.2 5.6e-58 1 CL0016
Cotton_A_19627_CDS 64 149 64 166 PF00005.27 ABC_tran Domain 1 84 137 49.9 4.3e-13 1 CL0023
Cotton_A_33987_CDS 17 136 13 145 PF05056.12 DUF674 Family 109 231 449 65.7 3.5e-18 1 No_clan
Cotton_A_17671_CDS 326 422 324 425 PF02362.21 B3 Family 3 98 101 56.0 2.9e-15 1 CL0405
Cotton_A_37141_CDS 5 141 5 142 PF00179.26 UQ_con Domain 1 139 140 182.3 3.3e-54 1 CL0208
Cotton_A_21950_CDS 14 145 11 147 PF01156.19 IU_nuc_hydro Domain 176 303 305 52.4 5.8e-14 1 No_clan
Cotton_A_01723_CDS 46 81 45 88 PF01494.19 FAD_binding_3 Family 2 37 349 22.9 4.4e-05 1 CL0063
Cotton_A_11087_CDS 5 171 5 172 PF14215.6 bHLH-MYC_N Family 1 174 175 109.0 3.1e-31 1 CL0161
Cotton_A_14144_CDS 64 176 60 176 PF13474.6 SnoaL_3 Domain 5 117 121 75.9 3e-21 1 CL0051
Cotton_A_32840_CDS 63 108 61 108 PF13639.6 zf-RING_2 Domain 3 44 44 41.0 1.8e-10 1 CL0229
Cotton_A_09440_CDS 1 134 1 134 PF07207.11 Lir1 Family 1 134 134 162.7 5e-48 1 No_clan
Cotton_A_15057_CDS 28 104 23 112 PF00234.22 Tryp_alpha_amyl Family 1 84 87 24.8 2.2e-05 1 CL0482
Cotton_A_02377_CDS 4 358 4 358 PF05631.14 MFS_5 Family 1 354 354 619.2 1.8e-186 1 CL0015
Cotton_A_29759_CDS 10 333 9 521 PF03547.18 Mem_trans Family 2 231 387 325.2 3.7e-97 1 CL0064
Cotton_A_02711_CDS 106 395 105 395 PF03151.16 TPT Family 2 290 290 414.0 3.3e-124 1 CL0184
Cotton_A_02292_CDS 57 200 56 201 PF00293.28 NUDIX Domain 2 130 131 81.3 6e-23 1 CL0261
Cotton_A_13906_CDS 1243 1271 1243 1273 PF15629.6 Perm-CXXC Family 1 30 32 41.4 1.3e-10 1 No_clan
Cotton_A_19646_CDS 55 158 55 158 PF00011.21 HSP20 Family 1 102 102 111.5 1.8e-32 1 CL0190
Cotton_A_15078_CDS 3 463 2 464 PF03094.15 Mlo Family 2 418 479 514.0 2.9e-154 1 No_clan
Cotton_A_08791_CDS 35 105 34 107 PF01799.20 Fer2_2 Domain 2 72 76 98.7 1.4e-28 1 CL0486
Cotton_A_08791_CDS 127 178 126 192 PF03450.17 CO_deh_flav_C Domain 2 50 103 37.8 1.6e-09 1 CL0233
Cotton_A_27846_CDS 29 176 29 177 PF04043.15 PMEI Domain 1 153 154 130.9 4.9e-38 1 No_clan
Cotton_A_40929_CDS 15 79 7 100 PF13360.6 PQQ_2 Domain 5 69 237 33.6 2.9e-08 1 CL0186
Cotton_A_27653_CDS 402 643 402 643 PF07891.12 DUF1666 Family 1 246 246 285.4 4.1e-85 1 No_clan
Cotton_A_05651_CDS 85 355 81 358 PF07714.17 Pkinase_Tyr Domain 5 256 259 157.5 3.6e-46 1 CL0016
Cotton_A_19314_CDS 71 331 71 333 PF01501.20 Glyco_transf_8 Family 1 254 256 175.7 1.3e-51 1 CL0110
Cotton_A_08298_CDS 34 362 34 363 PF13968.6 DUF4220 Family 1 347 347 274.9 1.2e-81 1 No_clan
Cotton_A_08298_CDS 581 632 579 632 PF04578.13 DUF594 Family 4 55 55 68.0 3.8e-19 1 No_clan
Cotton_A_06552_CDS 37 484 37 492 PF00067.22 p450 Domain 1 454 463 330.4 1.7e-98 1 No_clan
Cotton_A_26305_CDS 247 391 247 393 PF01764.25 Lipase_3 Family 1 140 142 113.9 5.1e-33 1 CL0028
Cotton_A_27492_CDS 12 80 12 81 PF00076.22 RRM_1 Domain 1 69 70 56.0 2.5e-15 1 CL0221
Cotton_A_13406_CDS 30 181 30 181 PF14299.6 PP2 Family 1 146 146 128.0 2.8e-37 1 No_clan
Cotton_A_07878_CDS 110 586 110 586 PF03372.23 Exo_endo_phos Domain 1 233 233 39.5 4.3e-10 1 CL0530
Cotton_A_29919_CDS 78 161 78 161 PF01777.18 Ribosomal_L27e Family 1 85 85 108.2 2e-31 1 No_clan
Cotton_A_28874_CDS 59 521 59 521 PF00171.22 Aldedh Family 1 462 462 598.4 7.4e-180 1 CL0099
Cotton_A_00557_CDS 54 80 54 83 PF13450.6 NAD_binding_8 Domain 1 27 68 23.8 3.8e-05 1 CL0063
Cotton_A_00557_CDS 201 473 200 473 PF08491.10 SE Family 2 276 276 390.3 3.6e-117 1 CL0063
Cotton_A_24851_CDS 183 238 183 239 PF00412.22 LIM Domain 1 57 58 39.8 4e-10 1 CL0167
Cotton_A_24851_CDS 332 553 332 553 PF12315.8 DA1-like Family 1 208 208 343.2 4.1e-103 1 CL0126
Cotton_A_01438_CDS 54 149 54 149 PF13649.6 Methyltransf_25 Domain 1 97 97 52.4 6.3e-14 1 CL0063
Cotton_A_01438_CDS 283 376 283 376 PF13649.6 Methyltransf_25 Domain 1 97 97 72.4 3.7e-20 1 CL0063
Cotton_A_13517_CDS 93 460 92 461 PF03759.13 PRONE Family 2 362 363 621.4 3.9e-187 1 No_clan
Cotton_A_00474_CDS 102 209 101 209 PF02319.20 E2F_TDP Domain 2 71 71 73.4 1.1e-20 1 CL0123
Cotton_A_00474_CDS 217 269 216 275 PF08781.10 DP Domain 2 54 138 47.2 1.9e-12 1 No_clan
Cotton_A_21849_CDS 21 58 20 62 PF00646.33 F-box Domain 2 39 48 34.0 1.8e-08 1 CL0271
Cotton_A_12607_CDS 7 133 7 133 PF02365.15 NAM Family 1 126 126 140.9 4e-41 1 No_clan
Cotton_A_31588_CDS 121 147 120 148 PF01535.20 PPR Family 2 28 31 9.5 1.2 1 CL0020
Cotton_A_31588_CDS 153 202 153 202 PF13041.6 PPR_2 Repeat 1 50 50 39.0 7e-10 1 CL0020
Cotton_A_31588_CDS 227 256 226 256 PF01535.20 PPR Family 2 31 31 18.0 0.0024 1 CL0020
Cotton_A_31588_CDS 261 308 259 308 PF13041.6 PPR_2 Repeat 4 50 50 52.1 5.4e-14 1 CL0020
Cotton_A_31588_CDS 329 378 329 378 PF13041.6 PPR_2 Repeat 1 50 50 67.2 1.1e-18 1 CL0020
Cotton_A_31588_CDS 399 447 399 448 PF13041.6 PPR_2 Repeat 1 49 50 65.2 4.3e-18 1 CL0020
Cotton_A_31588_CDS 470 518 469 518 PF13041.6 PPR_2 Repeat 2 50 50 69.7 1.8e-19 1 CL0020
Cotton_A_31588_CDS 539 588 539 588 PF13041.6 PPR_2 Repeat 1 50 50 56.8 1.8e-15 1 CL0020
Cotton_A_31588_CDS 612 658 609 658 PF13041.6 PPR_2 Repeat 4 50 50 48.4 8e-13 1 CL0020
Cotton_A_04319_CDS 125 166 125 166 PF13041.6 PPR_2 Repeat 9 50 50 46.1 4.2e-12 1 CL0020
Cotton_A_04319_CDS 187 236 187 236 PF13041.6 PPR_2 Repeat 1 50 50 59.2 3.3e-16 1 CL0020
Cotton_A_04319_CDS 257 306 257 306 PF13041.6 PPR_2 Repeat 1 50 50 50.6 1.7e-13 1 CL0020
Cotton_A_04319_CDS 371 399 370 400 PF01535.20 PPR Family 2 30 31 13.8 0.051 1 CL0020
Cotton_A_04319_CDS 402 449 402 451 PF13041.6 PPR_2 Repeat 1 48 50 30.3 3.4e-07 1 CL0020
Cotton_A_10014_CDS 49 108 48 112 PF10601.9 zf-LITAF-like Family 2 64 70 47.8 1.3e-12 1 No_clan
Cotton_A_16248_CDS 118 184 118 186 PF07258.14 COMM_domain Domain 1 70 72 44.9 9.2e-12 1 No_clan
Cotton_A_31192_CDS 138 277 135 283 PF00931.22 NB-ARC Domain 4 150 252 103.4 1.1e-29 1 CL0023
Cotton_A_13867_CDS 33 92 19 104 PF01190.17 Pollen_Ole_e_I Family 5 84 99 22.6 0.0001 1 CL0287
Cotton_A_00830_CDS 89 115 89 115 PF00642.24 zf-CCCH Family 1 27 27 38.8 5.8e-10 1 CL0537
Cotton_A_11363_CDS 821 979 821 979 PF11995.8 DUF3490 Family 1 158 161 242.7 1.5e-72 1 No_clan
Cotton_A_39391_CDS 25 80 13 82 PF00004.29 AAA Domain 75 130 132 46.2 5.6e-12 1 CL0023
Cotton_A_09952_CDS 58 193 58 194 PF04146.15 YTH Domain 1 165 166 161.9 1.2e-47 1 CL0178
Cotton_A_04640_CDS 64 250 61 250 PF02115.17 Rho_GDI Domain 5 195 195 278.5 2.7e-83 1 CL0159
Cotton_A_23503_CDS 124 490 123 490 PF00069.25 Pkinase Domain 2 264 264 149.3 1.3e-43 1 CL0016
Cotton_A_32656_CDS 28 171 28 171 PF00810.18 ER_lumen_recept Family 1 147 147 180.5 3.2e-53 1 CL0141
Cotton_A_19909_CDS 61 459 56 460 PF00501.28 AMP-binding Family 6 422 423 306.7 2.1e-91 1 CL0378
Cotton_A_19909_CDS 468 535 468 535 PF13193.6 AMP-binding_C Domain 1 76 76 44.1 3.1e-11 1 CL0531
Cotton_A_00678_CDS 11 77 5 78 PF02519.14 Auxin_inducible Family 23 89 90 86.3 1.2e-24 1 No_clan
Cotton_A_36109_CDS 63 114 54 115 PF13855.6 LRR_8 Repeat 10 60 61 27.3 2.2e-06 1 CL0022
Cotton_A_36109_CDS 153 189 153 200 PF12799.7 LRR_4 Repeat 1 40 44 32.4 8.6e-08 1 CL0022
Cotton_A_36109_CDS 401 578 397 584 PF07714.17 Pkinase_Tyr Domain 5 162 259 76.6 1.8e-21 1 CL0016
Cotton_A_36613_CDS 184 487 181 488 PF08318.12 COG4 Domain 4 334 335 234.3 1.9e-69 1 CL0294
Cotton_A_39018_CDS 90 294 89 294 PF00856.28 SET Family 2 169 169 55.7 7.9e-15 1 No_clan
Cotton_A_39018_CDS 327 460 327 460 PF09273.11 Rubis-subs-bind Domain 1 129 129 73.9 1.8e-20 1 No_clan
Cotton_A_17609_CDS 40 86 40 86 PF12937.7 F-box-like Domain 1 48 48 29.1 6.8e-07 1 CL0271
Cotton_A_17609_CDS 422 456 417 457 PF00514.23 Arm Repeat 6 40 41 25.5 9.6e-06 1 CL0020
Cotton_A_17609_CDS 463 497 458 498 PF00514.23 Arm Repeat 6 40 41 21.4 0.00018 1 CL0020
Cotton_A_17609_CDS 500 542 499 542 PF00514.23 Arm Repeat 2 41 41 32.9 4.2e-08 1 CL0020
Cotton_A_17609_CDS 544 584 543 584 PF00514.23 Arm Repeat 2 41 41 29.1 6.9e-07 1 CL0020
Cotton_A_17609_CDS 592 628 589 629 PF00514.23 Arm Repeat 4 40 41 35.0 9.4e-09 1 CL0020
Cotton_A_17609_CDS 630 672 630 673 PF00514.23 Arm Repeat 1 40 41 28.6 1e-06 1 CL0020
Cotton_A_17609_CDS 676 713 674 714 PF00514.23 Arm Repeat 3 40 41 31.2 1.5e-07 1 CL0020
Cotton_A_26317_CDS 1 113 1 113 PF04618.12 HD-ZIP_N Domain 1 110 110 111.5 2.8e-32 1 No_clan
Cotton_A_26317_CDS 140 194 139 195 PF00046.29 Homeodomain Domain 2 56 57 60.8 8.2e-17 1 CL0123
Cotton_A_26317_CDS 196 230 196 231 PF02183.18 HALZ Coiled-coil 1 42 43 42.6 5.3e-11 1 No_clan
Cotton_A_33816_CDS 30 68 28 69 PF08263.12 LRRNT_2 Family 3 40 41 33.9 2.9e-08 1 No_clan
Cotton_A_33816_CDS 151 205 149 205 PF13855.6 LRR_8 Repeat 7 61 61 29.3 5.2e-07 1 CL0022
Cotton_A_33816_CDS 219 277 217 278 PF13855.6 LRR_8 Repeat 3 60 61 36.3 3.6e-09 1 CL0022
Cotton_A_33816_CDS 610 668 608 668 PF13855.6 LRR_8 Repeat 3 61 61 38.7 6e-10 1 CL0022
Cotton_A_07889_CDS 52 142 52 162 PF14226.6 DIOX_N Family 1 95 118 97.8 6.7e-28 1 CL0029
Cotton_A_07889_CDS 205 302 202 302 PF03171.20 2OG-FeII_Oxy Domain 4 101 101 91.1 5e-26 1 CL0029
Cotton_A_24913_CDS 46 85 44 89 PF00646.33 F-box Domain 3 42 48 25.1 1.1e-05 1 CL0271
Cotton_A_24913_CDS 136 181 134 182 PF01344.25 Kelch_1 Repeat 4 45 46 28.5 8.3e-07 1 CL0186
Cotton_A_24913_CDS 184 229 184 230 PF01344.25 Kelch_1 Repeat 1 45 46 48.8 3.9e-13 1 CL0186
Cotton_A_24913_CDS 236 276 232 277 PF01344.25 Kelch_1 Repeat 5 43 46 27.2 2.1e-06 1 CL0186
Cotton_A_04483_CDS 47 177 46 177 PF02469.22 Fasciclin Domain 2 128 128 77.9 7.5e-22 1 No_clan
Cotton_A_11550_CDS 333 390 329 437 PF00201.18 UDPGT Family 325 382 499 50.8 1.2e-13 1 CL0113
Cotton_A_11734_CDS 1 112 1 112 PF00393.19 6PGD Domain 160 271 289 136.1 1.5e-39 1 CL0106
Cotton_A_21770_CDS 66 480 65 481 PF01490.18 Aa_trans Family 2 406 409 198.6 1.4e-58 1 CL0062
Cotton_A_11922_CDS 11 51 10 56 PF00319.18 SRF-TF Domain 2 42 48 66.6 9.4e-19 1 No_clan
Cotton_A_22300_CDS 2 217 1 224 PF00069.25 Pkinase Domain 26 237 264 123.1 1.3e-35 1 CL0016
Cotton_A_35364_CDS 40 115 15 115 PF14368.6 LTP_2 Family 21 97 97 48.9 5.1e-13 1 CL0482
Cotton_A_04077_CDS 4 95 3 95 PF01250.17 Ribosomal_S6 Domain 2 90 90 48.0 1.2e-12 1 No_clan
Cotton_A_14678_CDS 48 295 48 296 PF00141.23 peroxidase Domain 1 228 229 260.0 2e-77 1 CL0617
Cotton_A_31463_CDS 66 327 65 327 PF00069.25 Pkinase Domain 2 264 264 238.8 6.3e-71 1 CL0016
Cotton_A_06879_CDS 174 599 159 604 PF01457.16 Peptidase_M8 Family 97 525 529 284.0 2.3e-84 1 CL0126
Cotton_A_06879_CDS 639 666 639 666 PF07974.13 EGF_2 Domain 1 32 32 26.2 7.6e-06 1 CL0001
Cotton_A_29885_CDS 36 356 36 357 PF00332.18 Glyco_hydro_17 Domain 1 312 313 273.3 3.4e-81 1 CL0058
Cotton_A_29885_CDS 373 444 372 444 PF07983.13 X8 Domain 2 76 76 64.3 1.2e-17 1 No_clan
Cotton_A_14306_CDS 220 344 220 345 PF00134.23 Cyclin_N Domain 1 126 127 146.2 4e-43 1 CL0065
Cotton_A_14306_CDS 347 462 347 463 PF02984.19 Cyclin_C Domain 1 117 119 116.6 6.2e-34 1 CL0065
Cotton_A_02496_CDS 53 175 37 179 PF10294.9 Methyltransf_16 Family 16 148 174 52.7 4.2e-14 1 CL0063
Cotton_A_36937_CDS 4 77 4 77 PF08783.11 DWNN Domain 1 74 74 77.3 8.3e-22 1 CL0072
Cotton_A_36937_CDS 162 182 162 182 PF13696.6 zf-CCHC_2 Domain 1 21 21 31.7 9.4e-08 1 CL0511
Cotton_A_08340_CDS 22 188 21 191 PF00248.21 Aldo_ket_red Domain 2 159 294 101.1 6.4e-29 1 No_clan
Cotton_A_36213_CDS 110 196 108 196 PF13837.6 Myb_DNA-bind_4 Domain 3 90 90 69.4 2.5e-19 1 CL0123
Cotton_A_36213_CDS 389 472 387 478 PF13837.6 Myb_DNA-bind_4 Domain 3 83 90 48.0 1.3e-12 1 CL0123
Cotton_A_02721_CDS 146 283 145 283 PF13365.6 Trypsin_2 Domain 2 150 150 72.0 9.9e-20 1 CL0124
Cotton_A_02721_CDS 431 576 431 576 PF17815.1 PDZ_3 Domain 1 145 145 161.9 8.4e-48 1 CL0466
Cotton_A_03015_CDS 60 190 59 191 PF01380.22 SIS Domain 2 130 131 66.1 2.7e-18 1 CL0067
Cotton_A_03015_CDS 220 276 220 278 PF00571.28 CBS Domain 1 55 57 19.6 0.00092 1 No_clan
Cotton_A_03015_CDS 289 344 289 346 PF00571.28 CBS Domain 1 54 57 30.9 2.8e-07 1 No_clan
Cotton_A_41015_CDS 13 266 4 272 PF00793.20 DAHP_synth_1 Domain 14 264 275 203.3 3.4e-60 1 CL0036
Cotton_A_13155_CDS 75 121 70 125 PF02297.17 COX6B Domain 9 66 76 44.9 1e-11 1 CL0351
Cotton_A_05272_CDS 25 157 24 157 PF02365.15 NAM Family 2 126 126 125.3 2.5e-36 1 No_clan
Cotton_A_19588_CDS 37 85 36 88 PF01842.25 ACT Domain 2 53 67 30.6 2.1e-07 1 CL0070
Cotton_A_19588_CDS 130 176 129 197 PF01842.25 ACT Domain 2 42 67 32.8 4.3e-08 1 CL0070
Cotton_A_19588_CDS 345 407 343 409 PF01842.25 ACT Domain 3 65 67 37.7 1.3e-09 1 CL0070
Cotton_A_26576_CDS 49 213 49 213 PF14543.6 TAXi_N Domain 1 178 178 132.1 2.5e-38 1 CL0129
Cotton_A_26576_CDS 233 386 232 388 PF14541.6 TAXi_C Domain 2 159 161 93.3 1.3e-26 1 CL0129
Cotton_A_37611_CDS 1 132 1 132 PF00125.24 Histone Domain 1 131 131 181.1 1.1e-53 1 CL0012
Cotton_A_11267_CDS 4 62 1 62 PF13855.6 LRR_8 Repeat 3 61 61 28.8 7.8e-07 1 CL0022
Cotton_A_11267_CDS 203 472 203 475 PF00069.25 Pkinase Domain 1 259 264 157.1 5.5e-46 1 CL0016
Cotton_A_01279_CDS 40 127 38 151 PF01426.18 BAH Domain 3 87 122 34.3 1.7e-08 1 No_clan
Cotton_A_20404_CDS 49 161 11 161 PF04885.13 Stig1 Family 35 139 139 107.1 9.9e-31 1 No_clan
Cotton_A_25610_CDS 13 285 13 291 PF04909.14 Amidohydro_2 Domain 1 284 291 96.2 3e-27 1 CL0034
Cotton_A_32622_CDS 4 74 1 80 PF05004.13 IFRD Family 101 176 306 33.2 2.9e-08 1 CL0020
Cotton_A_02595_CDS 51 285 47 288 PF04258.13 Peptidase_A22B Family 5 250 284 237.0 2.9e-70 1 CL0130
Cotton_A_02421_CDS 51 136 50 137 PF05684.12 DUF819 Family 2 92 378 91.0 7.8e-26 1 CL0064
Cotton_A_37741_CDS 61 324 60 324 PF00154.21 RecA Family 2 263 263 398.0 1.9e-119 1 CL0023
Cotton_A_18650_CDS 28 143 15 144 PF00828.19 Ribosomal_L27A Family 3 127 128 82.6 3.7e-23 1 CL0588
Cotton_A_30559_CDS 172 217 172 217 PF10533.9 Plant_zn_clust Domain 1 49 49 64.4 6.8e-18 1 No_clan
Cotton_A_30559_CDS 221 277 220 278 PF03106.15 WRKY Domain 2 58 59 93.4 7.2e-27 1 CL0274
Cotton_A_35475_CDS 11 89 10 89 PF17927.1 Ins134_P3_kin_N Domain 2 80 80 95.1 2.4e-27 1 CL0483
Cotton_A_35475_CDS 109 296 105 297 PF05770.11 Ins134_P3_kin Domain 6 200 201 236.9 1.4e-70 1 CL0179
Cotton_A_34572_CDS 237 599 237 599 PF03081.15 Exo70 Family 1 376 376 322.8 2.8e-96 1 CL0295
Cotton_A_03369_CDS 126 246 126 247 PF09335.11 SNARE_assoc Family 1 119 120 55.4 8.1e-15 1 No_clan
Cotton_A_11131_CDS 63 126 7 126 PF14510.6 ABC_trans_N Domain 29 81 81 41.0 2.2e-10 1 No_clan
Cotton_A_11131_CDS 151 334 151 335 PF00005.27 ABC_tran Domain 1 136 137 50.2 3.6e-13 1 CL0023
Cotton_A_11131_CDS 487 699 486 699 PF01061.24 ABC2_membrane Family 2 210 210 137.4 4.2e-40 1 CL0181
Cotton_A_11131_CDS 704 767 704 768 PF08370.11 PDR_assoc Family 1 64 65 83.9 4.7e-24 1 No_clan
Cotton_A_11131_CDS 847 996 845 997 PF00005.27 ABC_tran Domain 3 136 137 60.2 3e-16 1 CL0023
Cotton_A_11131_CDS 1142 1356 1142 1356 PF01061.24 ABC2_membrane Family 1 210 210 175.4 1e-51 1 CL0181
Cotton_A_11817_CDS 379 640 379 642 PF12697.7 Abhydrolase_6 Domain 1 218 220 66.4 5.5e-18 1 CL0028
Cotton_A_14075_CDS 1052 1099 1050 1099 PF00010.26 HLH Domain 3 53 53 50.4 1.6e-13 1 No_clan
Cotton_A_37780_CDS 213 290 212 298 PF00270.29 DEAD Domain 2 72 176 56.0 4e-15 1 CL0023
Cotton_A_36128_CDS 4 112 2 112 PF04043.15 PMEI Domain 36 154 154 34.3 2.7e-08 1 No_clan
Cotton_A_35509_CDS 102 366 100 369 PF00069.25 Pkinase Domain 4 260 264 170.8 3.6e-50 1 CL0016
Cotton_A_32289_CDS 15 149 15 149 PF04061.14 ORMDL Family 1 136 136 171.3 8.7e-51 1 No_clan
Cotton_A_33478_CDS 19 140 16 140 PF04852.12 DUF640 Family 5 126 126 220.8 4.4e-66 1 No_clan
Cotton_A_09580_CDS 13 34 11 34 PF01754.16 zf-A20 Family 3 24 24 46.3 2.8e-12 1 No_clan
Cotton_A_09580_CDS 101 137 101 138 PF01428.16 zf-AN1 Family 1 39 40 42.5 5.2e-11 1 No_clan
Cotton_A_37808_CDS 42 257 40 258 PF01988.19 VIT1 Family 3 214 215 118.3 4.1e-34 1 No_clan
Cotton_A_27169_CDS 131 213 128 213 PF04359.14 DUF493 Domain 4 84 84 66.4 2.6e-18 1 CL0070
Cotton_A_06485_CDS 41 227 41 228 PF00485.18 PRK Domain 1 196 197 154.0 3.8e-45 1 CL0023
Cotton_A_06485_CDS 257 458 254 458 PF14681.6 UPRTase Domain 3 207 207 245.8 2.8e-73 1 CL0533
Cotton_A_02655_CDS 55 121 55 121 PF00076.22 RRM_1 Domain 1 70 70 48.4 6.1e-13 1 CL0221
Cotton_A_02655_CDS 154 199 140 199 PF00076.22 RRM_1 Domain 26 70 70 41.9 6.3e-11 1 CL0221
Cotton_A_02655_CDS 274 330 272 333 PF00076.22 RRM_1 Domain 9 67 70 22.9 5.6e-05 1 CL0221
Cotton_A_09038_CDS 12 125 8 151 PF10604.9 Polyketide_cyc2 Family 5 118 143 75.1 6.7e-21 1 CL0209
Cotton_A_28420_CDS 55 327 25 330 PF00389.30 2-Hacid_dh Domain 33 129 134 64.2 9.2e-18 1 CL0325
Cotton_A_28420_CDS 125 300 125 300 PF02826.19 2-Hacid_dh_C Domain 1 178 178 162.4 6.7e-48 1 CL0063
Cotton_A_28420_CDS 386 662 351 663 PF00389.30 2-Hacid_dh Domain 31 133 134 69.8 1.7e-19 1 CL0325
Cotton_A_28420_CDS 458 631 458 631 PF02826.19 2-Hacid_dh_C Domain 1 178 178 162.6 5.9e-48 1 CL0063
Cotton_A_07442_CDS 54 114 53 114 PF00226.31 DnaJ Domain 2 63 63 72.8 1.8e-20 1 CL0392
Cotton_A_32774_CDS 52 147 52 169 PF14226.6 DIOX_N Family 1 96 118 52.2 9.3e-14 1 CL0029
Cotton_A_32774_CDS 206 299 201 300 PF03171.20 2OG-FeII_Oxy Domain 6 100 101 81.4 5.4e-23 1 CL0029
Cotton_A_06446_CDS 30 126 29 126 PF00329.19 Complex1_30kDa Family 2 96 122 75.4 5.5e-21 1 No_clan
Cotton_A_12347_CDS 30 187 30 187 PF04862.12 DUF642 Domain 1 157 157 196.0 3.2e-58 1 CL0202
Cotton_A_12347_CDS 222 365 198 366 PF04862.12 DUF642 Domain 19 156 157 66.8 1.8e-18 1 CL0202
Cotton_A_14305_CDS 42 93 41 105 PF01424.22 R3H Domain 2 51 60 52.5 3.7e-14 1 No_clan
Cotton_A_14305_CDS 133 179 127 180 PF12752.7 SUZ Domain 4 56 57 36.8 4.9e-09 1 No_clan
Cotton_A_13877_CDS 10 79 9 79 PF00808.23 CBFD_NFYB_HMF Domain 2 65 65 39.2 6.3e-10 1 CL0012
Cotton_A_39553_CDS 123 252 123 253 PF00004.29 AAA Domain 1 131 132 125.1 2.4e-36 1 CL0023
Cotton_A_39553_CDS 275 310 275 318 PF17862.1 AAA_lid_3 Domain 1 36 45 35.3 7.5e-09 1 CL0671
Cotton_A_15967_CDS 295 463 295 465 PF16909.5 VPS13_C Family 1 175 178 158.2 1.7e-46 1 No_clan
Cotton_A_01316_CDS 1 93 1 95 PF01624.20 MutS_I Domain 20 111 113 64.7 8.1e-18 1 No_clan
Cotton_A_01316_CDS 109 184 109 269 PF05188.17 MutS_II Domain 1 61 137 32.8 7.1e-08 1 No_clan
Cotton_A_01316_CDS 295 606 295 606 PF05192.18 MutS_III Domain 1 191 191 124.9 4.3e-36 1 No_clan
Cotton_A_01316_CDS 661 860 661 860 PF00488.21 MutS_V Domain 1 188 188 232.5 3.8e-69 1 CL0023
Cotton_A_30443_CDS 125 264 125 266 PF06962.12 rRNA_methylase Family 1 135 137 135.8 8.8e-40 1 CL0063
Cotton_A_18471_CDS 76 160 76 172 PF01453.24 B_lectin Domain 1 91 105 46.8 3.4e-12 1 No_clan
Cotton_A_18471_CDS 240 308 200 309 PF00954.20 S_locus_glycop Domain 43 110 111 26.2 8.8e-06 1 No_clan
Cotton_A_18471_CDS 514 793 512 797 PF00069.25 Pkinase Domain 4 257 264 173.7 4.7e-51 1 CL0016
Cotton_A_00395_CDS 41 112 41 112 PF00076.22 RRM_1 Domain 1 69 70 64.0 8.4e-18 1 CL0221
Cotton_A_35454_CDS 75 276 74 276 PF13483.6 Lactamase_B_3 Domain 2 163 163 104.3 6.1e-30 1 CL0381
Cotton_A_20652_CDS 629 655 625 655 PF13181.6 TPR_8 Repeat 8 34 34 19.4 0.00085 1 CL0020
Cotton_A_21698_CDS 79 157 75 157 PF05542.11 DUF760 Family 5 84 84 65.3 4.8e-18 1 No_clan
Cotton_A_21698_CDS 261 375 261 375 PF05542.11 DUF760 Family 1 84 84 103.1 7.7e-30 1 No_clan
Cotton_A_18930_CDS 40 344 39 345 PF01301.19 Glyco_hydro_35 Domain 2 315 316 388.2 3.6e-116 1 CL0058
Cotton_A_18930_CDS 352 423 352 423 PF17834.1 GHD Domain 1 72 72 97.6 3.1e-28 1 CL0369
Cotton_A_18930_CDS 768 845 768 845 PF02140.18 Gal_Lectin Domain 1 80 80 70.9 9.1e-20 1 No_clan
Cotton_A_20237_CDS 45 130 45 132 PF13837.6 Myb_DNA-bind_4 Domain 1 88 90 70.9 9e-20 1 CL0123
Cotton_A_20530_CDS 7 22 6 23 PF07145.15 PAM2 Motif 2 17 18 24.6 1.2e-05 1 No_clan
Cotton_A_13548_CDS 4 256 1 256 PF03151.16 TPT Family 39 290 290 135.1 3e-39 1 CL0184
Cotton_A_29804_CDS 21 140 17 159 PF07887.11 Calmodulin_bind Family 151 272 292 166.3 9.2e-49 1 No_clan
Cotton_A_32387_CDS 7 88 4 102 PF12796.7 Ank_2 Repeat 4 78 83 32.5 9.5e-08 1 CL0465
Cotton_A_14297_CDS 56 156 25 157 PF00179.26 UQ_con Domain 38 139 140 106.6 7.9e-31 1 CL0208
Cotton_A_09638_CDS 21 91 19 101 PF00564.24 PB1 Domain 3 71 84 32.9 4.6e-08 1 CL0072
Cotton_A_09638_CDS 179 242 176 242 PF03108.15 DBD_Tnp_Mut Family 4 67 67 80.7 5.6e-23 1 CL0274
Cotton_A_09638_CDS 373 464 372 466 PF10551.9 MULE Domain 2 94 96 65.3 5.1e-18 1 CL0219
Cotton_A_09638_CDS 628 655 615 658 PF04434.17 SWIM Domain 3 37 40 33.3 2.7e-08 1 No_clan
Cotton_A_37859_CDS 46 182 10 194 PF05097.12 DUF688 Family 60 149 446 22.4 5.9e-05 1 No_clan
Cotton_A_34385_CDS 14 332 12 352 PF00743.19 FMO-like Family 6 335 532 90.0 1.2e-25 1 CL0063
Cotton_A_21975_CDS 13 97 12 97 PF14560.6 Ubiquitin_2 Domain 2 87 87 98.7 2e-28 1 CL0072
Cotton_A_21975_CDS 160 226 160 226 PF01302.25 CAP_GLY Domain 1 65 65 77.9 4.3e-22 1 CL0010
Cotton_A_36432_CDS 59 108 2 116 PF04081.13 DNA_pol_delta_4 Family 70 119 131 79.1 3.7e-22 1 No_clan
Cotton_A_36976_CDS 1 95 1 104 PF05695.12 DUF825 Family 565 661 1486 170.6 3e-50 1 No_clan
Cotton_A_17479_CDS 189 628 189 629 PF04547.12 Anoctamin Family 1 448 449 331.6 7.3e-99 1 CL0416
Cotton_A_01236_CDS 96 184 95 187 PF02575.16 YbaB_DNA_bd Family 2 90 91 58.9 4.5e-16 1 No_clan
Cotton_A_34897_CDS 22 149 8 150 PF00892.20 EamA Family 15 136 137 30.8 2.7e-07 1 CL0184
Cotton_A_34897_CDS 179 316 177 317 PF00892.20 EamA Family 3 136 137 36.9 3.5e-09 1 CL0184
Cotton_A_15595_CDS 127 187 127 187 PF03106.15 WRKY Domain 1 59 59 87.4 5.2e-25 1 CL0274
Cotton_A_16088_CDS 38 96 38 96 PF04783.12 DUF630 Family 1 59 59 85.1 2.7e-24 1 No_clan
Cotton_A_16088_CDS 492 812 492 812 PF04782.12 DUF632 Family 1 310 310 362.0 2.7e-108 1 No_clan
Cotton_A_28700_CDS 102 324 100 325 PF01963.17 TraB Family 5 253 263 99.1 3.8e-28 1 CL0572
Cotton_A_33287_CDS 40 450 37 451 PF00501.28 AMP-binding Family 4 422 423 324.7 6.7e-97 1 CL0378
Cotton_A_33287_CDS 459 534 459 534 PF13193.6 AMP-binding_C Domain 1 76 76 58.0 1.4e-15 1 CL0531
Cotton_A_12467_CDS 33 119 33 119 PF00234.22 Tryp_alpha_amyl Family 1 87 87 34.4 2.2e-08 1 CL0482
Cotton_A_04129_CDS 42 76 40 81 PF00646.33 F-box Domain 3 37 48 28.1 1.3e-06 1 CL0271
Cotton_A_00081_CDS 90 139 89 140 PF17181.4 EPF Family 2 52 53 50.6 1.4e-13 1 No_clan
Cotton_A_07606_CDS 14 174 14 175 PF00071.22 Ras Domain 1 161 162 202.2 3.7e-60 1 CL0023
Cotton_A_36842_CDS 2029 2126 2029 2129 PF00168.30 C2 Domain 1 100 103 43.0 4.5e-11 1 CL0154
Cotton_A_03654_CDS 89 134 89 143 PF01783.23 Ribosomal_L32p Family 1 46 56 40.9 1.8e-10 1 CL0167
Cotton_A_10308_CDS 20 186 17 189 PF03357.21 Snf7 Family 4 170 173 157.9 1.9e-46 1 CL0235
Cotton_A_29445_CDS 323 458 318 459 PF07738.13 Sad1_UNC Family 6 131 132 132.2 1.2e-38 1 CL0202
Cotton_A_40530_CDS 33 118 33 118 PF05922.16 Inhibitor_I9 Domain 1 82 82 66.6 2.4e-18 1 CL0570
Cotton_A_40530_CDS 144 598 143 609 PF00082.22 Peptidase_S8 Domain 2 291 298 164.2 4.1e-48 1 No_clan
Cotton_A_40530_CDS 383 473 382 473 PF02225.22 PA Family 2 89 89 38.4 9.6e-10 1 CL0364
Cotton_A_40530_CDS 674 772 674 772 PF17766.1 fn3_6 Domain 1 99 99 98.1 2.7e-28 1 CL0159
Cotton_A_35123_CDS 236 368 234 368 PF18441.1 Hen1_Lam_C Domain 3 136 136 196.8 1.2e-58 1 No_clan
Cotton_A_35123_CDS 370 516 370 516 PF17842.1 dsRBD2 Domain 1 147 147 204.8 6.5e-61 1 CL0196
Cotton_A_35123_CDS 723 826 687 896 PF13489.6 Methyltransf_23 Domain 24 105 165 29.5 5.7e-07 1 CL0063
Cotton_A_15105_CDS 8 443 7 445 PF02458.15 Transferase Family 2 432 434 341.7 5.4e-102 1 CL0149
Cotton_A_29950_CDS 33 315 31 317 PF01063.19 Aminotran_4 Domain 3 221 223 67.5 1.5e-18 1 No_clan
Cotton_A_22870_CDS 70 128 70 129 PF00830.19 Ribosomal_L28 Family 1 59 60 70.4 1.1e-19 1 No_clan
Cotton_A_00529_CDS 4 112 2 112 PF04043.15 PMEI Domain 36 154 154 34.5 2.3e-08 1 No_clan
Cotton_A_33551_CDS 34 85 34 85 PF08100.11 Dimerisation Domain 1 51 51 84.3 4.2e-24 1 CL0123
Cotton_A_33551_CDS 140 345 140 345 PF00891.18 Methyltransf_2 Domain 1 210 210 269.9 1.1e-80 1 CL0063
Cotton_A_24821_CDS 1290 1515 1271 1519 PF15787.5 DUF4704 Family 52 273 279 193.6 4e-57 1 No_clan
Cotton_A_24821_CDS 2085 2178 2062 2181 PF16057.5 DUF4800 Family 153 243 254 37.0 2.2e-09 1 No_clan
Cotton_A_24821_CDS 2358 2424 2349 2428 PF14844.6 PH_BEACH Domain 31 96 100 41.9 8.4e-11 1 CL0266
Cotton_A_24821_CDS 2465 2746 2465 2746 PF02138.18 Beach Family 1 276 276 383.7 4.8e-115 1 No_clan
Cotton_A_24821_CDS 2882 2916 2880 2917 PF00400.32 WD40 Repeat 3 36 38 18.2 0.0034 1 CL0186
Cotton_A_24821_CDS 2939 2973 2938 2975 PF00400.32 WD40 Repeat 2 35 38 16.5 0.011 1 CL0186
Cotton_A_09028_CDS 50 139 50 139 PF00447.17 HSF_DNA-bind Domain 1 96 96 101.8 2.3e-29 1 CL0123
Cotton_A_19488_CDS 1202 1298 1190 1299 PF10347.9 Fmp27_GFWDK Domain 65 155 156 24.1 3.1e-05 1 No_clan
Cotton_A_19488_CDS 1923 2496 1923 2497 PF10351.9 Apt1 Family 1 477 478 318.0 1.1e-94 1 No_clan
Cotton_A_14625_CDS 14 122 13 123 PF01776.17 Ribosomal_L22e Family 2 109 109 159.3 3.5e-47 1 No_clan
Cotton_A_19167_CDS 25 74 23 108 PF00139.19 Lectin_legB Domain 3 59 249 26.7 3.5e-06 1 CL0004
Cotton_A_19885_CDS 145 226 63 228 PF00481.21 PP2C Family 64 143 258 40.8 1.9e-10 1 CL0238
Cotton_A_01904_CDS 12 103 1 108 PF03151.16 TPT Family 47 136 290 46.9 2.2e-12 1 CL0184
Cotton_A_01904_CDS 131 279 127 280 PF03151.16 TPT Family 140 289 290 69.8 2.4e-19 1 CL0184
Cotton_A_18518_CDS 296 427 258 445 PF03141.16 Methyltransf_29 Family 357 485 506 28.3 6.5e-07 1 CL0063
Cotton_A_02479_CDS 501 557 501 557 PF13517.6 VCBS Repeat 1 61 61 28.5 1.7e-06 1 CL0186
Cotton_A_26361_CDS 74 108 74 108 PF00805.22 Pentapeptide Repeat 1 35 40 34.5 1.2e-08 1 CL0505
Cotton_A_26361_CDS 142 181 142 181 PF00805.22 Pentapeptide Repeat 1 40 40 51.6 4.9e-14 1 CL0505
Cotton_A_09493_CDS 140 563 138 564 PF00654.20 Voltage_CLC Family 2 353 354 305.7 4.7e-91 1 No_clan
Cotton_A_09493_CDS 711 760 705 761 PF00571.28 CBS Domain 6 52 57 22.1 0.00015 1 No_clan
Cotton_A_06636_CDS 145 326 144 328 PF00625.21 Guanylate_kin Domain 2 179 182 199.9 2.7e-59 1 CL0023
Cotton_A_04377_CDS 69 349 66 349 PF00069.25 Pkinase Domain 6 264 264 242.6 4.5e-72 1 CL0016
Cotton_A_09459_CDS 16 136 15 153 PF13671.6 AAA_33 Domain 2 121 143 74.5 9.1e-21 1 CL0023
Cotton_A_12445_CDS 35 358 35 359 PF12819.7 Malectin_like Domain 1 335 336 229.2 7.3e-68 1 CL0202
Cotton_A_12445_CDS 370 406 367 406 PF08263.12 LRRNT_2 Family 4 41 41 22.4 0.00011 1 No_clan
Cotton_A_23532_CDS 8 123 1 136 PF01490.18 Aa_trans Family 64 171 409 52.5 3.1e-14 1 CL0062
Cotton_A_04508_CDS 12 86 10 86 PF04969.16 CS Domain 3 76 76 39.0 1.2e-09 1 CL0190
Cotton_A_31767_CDS 143 182 104 194 PF01764.25 Lipase_3 Family 53 92 142 31.3 1.5e-07 1 CL0028
Cotton_A_09065_CDS 31 120 20 121 PF02181.23 FH2 Family 102 177 372 49.4 3.7e-13 1 No_clan
Cotton_A_09065_CDS 118 298 116 298 PF02181.23 FH2 Family 192 372 372 195.4 1.5e-57 1 No_clan
Cotton_A_13596_CDS 6 50 6 50 PF15054.6 DUF4535 Family 1 45 45 82.1 1.7e-23 1 No_clan
Cotton_A_32838_CDS 16 109 16 110 PF13334.6 DUF4094 Family 1 87 88 115.6 9.8e-34 1 No_clan
Cotton_A_32838_CDS 149 346 149 347 PF01762.21 Galactosyl_T Family 1 194 195 174.1 2.8e-51 1 CL0110
Cotton_A_08660_CDS 59 113 41 114 PF12894.7 ANAPC4_WD40 Repeat 36 91 92 23.4 5.4e-05 1 CL0186
Cotton_A_22153_CDS 163 281 159 283 PF01529.20 DHHC Family 5 132 134 105.5 2.1e-30 1 No_clan
Cotton_A_26151_CDS 399 514 398 517 PF04488.15 Gly_transf_sug Family 2 95 98 84.9 4.5e-24 1 CL0110
Cotton_A_26151_CDS 525 654 525 656 PF04572.12 Gb3_synth Family 1 128 130 89.6 1.8e-25 1 No_clan
Cotton_A_19549_CDS 9 186 9 186 PF14215.6 bHLH-MYC_N Family 1 175 175 173.0 6.8e-51 1 CL0161
Cotton_A_19549_CDS 479 526 478 526 PF00010.26 HLH Domain 3 53 53 47.4 1.4e-12 1 No_clan
Cotton_A_05965_CDS 27 227 14 235 PF02263.19 GBP Domain 46 252 260 85.1 4.6e-24 1 CL0023
Cotton_A_05965_CDS 234 363 233 369 PF02841.14 GBP_C Domain 2 136 297 44.2 1.6e-11 1 CL0023
Cotton_A_15598_CDS 144 172 143 174 PF12854.7 PPR_1 Repeat 2 30 34 24.4 1.7e-05 1 CL0020
Cotton_A_15598_CDS 184 214 184 214 PF01535.20 PPR Family 1 31 31 20.0 0.00055 1 CL0020
Cotton_A_15598_CDS 216 263 216 265 PF13041.6 PPR_2 Repeat 1 48 50 59.1 3.5e-16 1 CL0020
Cotton_A_15598_CDS 286 335 286 335 PF13041.6 PPR_2 Repeat 1 50 50 64.6 7e-18 1 CL0020
Cotton_A_15598_CDS 356 402 356 405 PF13041.6 PPR_2 Repeat 1 47 50 52.9 3e-14 1 CL0020
Cotton_A_01552_CDS 79 138 51 140 PF02225.22 PA Family 28 87 89 31.0 1.8e-07 1 CL0364
Cotton_A_01552_CDS 286 336 286 341 PF13519.6 VWA_2 Domain 1 47 107 43.7 3.4e-11 1 CL0128
Cotton_A_01552_CDS 484 497 484 497 PF02809.20 UIM Motif 3 16 17 9.4 1.1 1 No_clan
Cotton_A_01552_CDS 558 572 557 572 PF02809.20 UIM Motif 2 16 17 10.4 0.51 1 No_clan
Cotton_A_01552_CDS 590 604 590 605 PF02809.20 UIM Motif 2 16 17 11.9 0.16 1 No_clan
Cotton_A_03881_CDS 222 331 199 355 PF03031.18 NIF Family 26 127 156 28.1 1.4e-06 1 CL0137
Cotton_A_03881_CDS 704 739 678 739 PF00035.26 dsrm Domain 32 67 67 22.7 0.00012 1 CL0196
Cotton_A_29990_CDS 94 237 94 237 PF00056.23 Ldh_1_N Family 1 141 141 163.1 4.1e-48 1 CL0063
Cotton_A_29990_CDS 239 405 239 405 PF02866.18 Ldh_1_C Domain 1 167 167 156.3 6.7e-46 1 CL0341
Cotton_A_07976_CDS 63 189 62 208 PF00190.22 Cupin_1 Domain 2 130 151 109.7 9.2e-32 1 CL0029
Cotton_A_04142_CDS 1621 1919 1621 1919 PF00648.21 Peptidase_C2 Family 1 297 297 298.6 3.8e-89 1 CL0125
Cotton_A_04142_CDS 1931 2068 1931 2070 PF01067.22 Calpain_III Domain 1 139 141 63.2 2.9e-17 1 CL0202
Cotton_A_15726_CDS 35 95 34 115 PF08240.12 ADH_N Domain 2 62 109 36.6 3.3e-09 1 CL0296
Cotton_A_15726_CDS 168 305 168 308 PF00107.26 ADH_zinc_N Family 1 127 130 74.4 7.8e-21 1 CL0063
Cotton_A_12493_CDS 60 223 60 223 PF04833.15 COBRA Family 1 165 165 250.8 5.4e-75 1 No_clan
Cotton_A_08973_CDS 35 119 33 157 PF03634.13 TCP Family 3 90 156 116.2 1.9e-33 1 No_clan
Cotton_A_40033_CDS 85 236 84 236 PF00005.27 ABC_tran Domain 2 137 137 87.8 8.9e-25 1 CL0023
Cotton_A_40033_CDS 385 596 384 596 PF01061.24 ABC2_membrane Family 2 210 210 112.6 1.7e-32 1 CL0181
Cotton_A_22327_CDS 21 272 19 275 PF00139.19 Lectin_legB Domain 3 246 249 250.5 1.7e-74 1 CL0004
Cotton_A_22327_CDS 347 611 346 613 PF00069.25 Pkinase Domain 2 260 264 169.9 6.9e-50 1 CL0016
Cotton_A_18241_CDS 44 482 31 485 PF00183.18 HSP90 Family 95 514 517 612.1 9.3e-184 1 No_clan
Cotton_A_29173_CDS 35 160 34 160 PF02365.15 NAM Family 2 126 126 129.3 1.5e-37 1 No_clan
Cotton_A_25569_CDS 259 337 256 339 PF00439.25 Bromodomain Domain 4 82 84 45.7 5.2e-12 1 No_clan
Cotton_A_11428_CDS 1 109 1 109 PF01554.18 MatE Family 52 161 161 64.9 6.7e-18 1 CL0222
Cotton_A_11428_CDS 170 332 170 333 PF01554.18 MatE Family 1 160 161 101.5 3.5e-29 1 CL0222
Cotton_A_03256_CDS 12 172 12 173 PF17144.4 Ribosomal_L5e Family 1 162 163 268.1 2.7e-80 1 CL0267
Cotton_A_03256_CDS 190 278 189 281 PF14204.6 Ribosomal_L18_c Domain 2 92 95 116.9 5.7e-34 1 No_clan
Cotton_A_15204_CDS 91 189 91 189 PF04526.13 DUF568 Family 1 101 101 94.7 4.7e-27 1 No_clan
Cotton_A_37125_CDS 54 185 54 186 PF03188.16 Cytochrom_B561 Family 1 136 137 134.1 3.4e-39 1 CL0328
Cotton_A_16433_CDS 101 148 100 149 PF08711.11 Med26 Domain 2 51 53 26.9 3.7e-06 1 No_clan
Cotton_A_00036_CDS 34 78 34 78 PF14364.6 DUF4408 Family 1 33 33 39.2 4e-10 1 No_clan
Cotton_A_22785_CDS 31 203 30 203 PF00112.23 Peptidase_C1 Domain 2 187 218 159.3 1.5e-46 1 CL0125
Cotton_A_03121_CDS 67 105 66 105 PF08263.12 LRRNT_2 Family 2 41 41 36.7 3.8e-09 1 No_clan
Cotton_A_03121_CDS 139 196 135 196 PF13855.6 LRR_8 Repeat 4 61 61 33.1 3.4e-08 1 CL0022
Cotton_A_25795_CDS 61 155 61 156 PF07876.12 Dabb Domain 1 96 97 49.3 5.6e-13 1 CL0032
Cotton_A_07650_CDS 114 151 112 151 PF00400.32 WD40 Repeat 3 38 38 16.0 0.017 1 CL0186
Cotton_A_07650_CDS 563 685 563 761 PF12931.7 Sec16_C Domain 1 148 302 26.3 5.4e-06 1 No_clan
Cotton_A_34159_CDS 105 368 105 369 PF01063.19 Aminotran_4 Domain 1 222 223 112.0 3.6e-32 1 No_clan
Cotton_A_27434_CDS 31 276 31 276 PF06813.13 Nodulin-like Family 1 250 250 276.9 1.5e-82 1 CL0015
Cotton_A_27434_CDS 355 556 352 563 PF07690.16 MFS_1 Family 2 176 353 34.1 1.4e-08 1 CL0015
Cotton_A_29422_CDS 15 195 15 213 PF13439.6 Glyco_transf_4 Domain 1 169 170 57.8 1.3e-15 1 CL0113
Cotton_A_29422_CDS 207 376 195 377 PF00534.20 Glycos_transf_1 Family 18 171 172 134.6 2.4e-39 1 CL0113
Cotton_A_02181_CDS 16 163 15 163 PF08768.11 DUF1794 Domain 2 149 149 150.9 2.4e-44 1 CL0116
Cotton_A_05718_CDS 5 56 5 57 PF00249.31 Myb_DNA-binding Domain 1 45 46 36.6 3.7e-09 1 CL0123
Cotton_A_05718_CDS 108 167 107 172 PF00538.19 Linker_histone Domain 3 64 74 42.2 7.6e-11 1 CL0123
Cotton_A_03465_CDS 29 102 29 104 PF03810.19 IBN_N Family 1 72 74 61.7 4.5e-17 1 CL0020
Cotton_A_35781_CDS 87 139 86 139 PF14416.6 PMR5N Domain 2 53 53 76.8 1.2e-21 1 No_clan
Cotton_A_35781_CDS 140 414 140 414 PF13839.6 PC-Esterase Family 1 283 283 264.2 1.8e-78 1 CL0264
Cotton_A_09189_CDS 105 149 103 150 PF00249.31 Myb_DNA-binding Domain 3 45 46 44.5 1.3e-11 1 CL0123
Cotton_A_19953_CDS 40 407 40 407 PF12819.7 Malectin_like Domain 1 336 336 152.6 1.4e-44 1 CL0202
Cotton_A_19953_CDS 540 803 536 806 PF07714.17 Pkinase_Tyr Domain 6 256 259 166.0 9.2e-49 1 CL0016
Cotton_A_12691_CDS 133 217 132 217 PF01388.21 ARID Domain 2 90 90 62.2 5.6e-17 1 CL0123
Cotton_A_12691_CDS 339 421 338 425 PF00011.21 HSP20 Family 2 89 102 22.0 0.00014 1 CL0190
Cotton_A_31473_CDS 63 168 48 193 PF13360.6 PQQ_2 Domain 59 154 237 32.5 6.1e-08 1 CL0186
Cotton_A_31473_CDS 327 449 321 471 PF13360.6 PQQ_2 Domain 7 107 237 34.9 1.2e-08 1 CL0186
Cotton_A_10355_CDS 346 610 342 610 PF07714.17 Pkinase_Tyr Domain 6 259 259 156.4 7.9e-46 1 CL0016
Cotton_A_03070_CDS 40 121 35 121 PF02298.17 Cu_bind_like Domain 6 84 84 92.0 1.7e-26 1 CL0026
Cotton_A_03070_CDS 157 242 157 242 PF02298.17 Cu_bind_like Domain 1 84 84 90.6 4.9e-26 1 CL0026
Cotton_A_03070_CDS 280 363 278 363 PF02298.17 Cu_bind_like Domain 3 84 84 92.3 1.4e-26 1 CL0026
Cotton_A_15748_CDS 76 250 76 250 PF00350.23 Dynamin_N Domain 1 168 168 135.7 1.5e-39 1 CL0023
Cotton_A_15748_CDS 261 541 257 542 PF01031.20 Dynamin_M Family 5 284 285 169.1 1.2e-49 1 No_clan
Cotton_A_15748_CDS 588 675 586 676 PF02212.18 GED Family 5 91 92 35.4 8.8e-09 1 No_clan
Cotton_A_38093_CDS 15 92 15 93 PF00076.22 RRM_1 Domain 1 69 70 32.4 6.1e-08 1 CL0221
Cotton_A_38093_CDS 147 176 146 177 PF00641.18 zf-RanBP Domain 2 29 30 28.0 9.8e-07 1 CL0167
Cotton_A_38093_CDS 216 242 214 242 PF00641.18 zf-RanBP Domain 4 30 30 21.0 0.00015 1 CL0167
Cotton_A_18153_CDS 5 103 5 104 PF04057.12 Rep-A_N Domain 1 100 101 75.3 3.1e-21 1 CL0021
Cotton_A_18153_CDS 194 278 192 282 PF01336.25 tRNA_anti-codon Domain 3 72 76 39.3 4.8e-10 1 CL0021
Cotton_A_18153_CDS 312 406 303 406 PF16900.5 REPA_OB_2 Domain 10 98 98 80.8 5.3e-23 1 CL0021
Cotton_A_18153_CDS 469 615 469 615 PF08646.10 Rep_fac-A_C Family 1 146 146 149.8 4.3e-44 1 CL0021
Cotton_A_20928_CDS 45 327 42 327 PF00069.25 Pkinase Domain 5 264 264 239.3 4.4e-71 1 CL0016
Cotton_A_09156_CDS 82 499 82 499 PF01373.17 Glyco_hydro_14 Domain 1 402 402 572.5 4.6e-172 1 CL0058
Cotton_A_02821_CDS 94 119 93 120 PF05678.14 VQ Motif 2 27 28 39.2 3.5e-10 1 No_clan
Cotton_A_36946_CDS 83 328 58 334 PF00481.21 PP2C Family 31 251 258 146.7 9.1e-43 1 CL0238
Cotton_A_20107_CDS 79 250 77 252 PF01699.24 Na_Ca_ex Family 4 149 151 31.0 2.1e-07 1 No_clan
Cotton_A_20107_CDS 294 356 290 359 PF13499.6 EF-hand_7 Domain 4 68 71 33.9 3.2e-08 1 CL0220
Cotton_A_20107_CDS 420 564 419 565 PF01699.24 Na_Ca_ex Family 2 150 151 49.7 3.7e-13 1 No_clan
Cotton_A_16067_CDS 25 157 22 159 PF05903.14 Peptidase_C97 Domain 4 149 151 159.3 5.7e-47 1 CL0125
Cotton_A_11981_CDS 9 218 9 219 PF03181.15 BURP Family 1 214 215 233.8 1.5e-69 1 No_clan
Cotton_A_08356_CDS 14 168 14 168 PF03079.14 ARD Domain 1 157 157 220.3 1.3e-65 1 CL0029
Cotton_A_31684_CDS 28 185 28 185 PF07800.12 DUF1644 Family 1 168 168 214.6 8.8e-64 1 CL0229
Cotton_A_07991_CDS 54 103 53 104 PF00847.20 AP2 Domain 2 53 54 48.5 7.4e-13 1 CL0081
Cotton_A_36475_CDS 55 97 55 97 PF01476.20 LysM Domain 1 44 44 23.2 5.2e-05 1 CL0187
Cotton_A_37806_CDS 23 311 23 313 PF08449.11 UAA Family 1 300 302 264.6 1e-78 1 CL0184
Cotton_A_06367_CDS 14 146 14 146 PF00380.19 Ribosomal_S9 Family 1 121 121 110.0 9.6e-32 1 CL0329
Cotton_A_27293_CDS 164 246 136 246 PF13640.6 2OG-FeII_Oxy_3 Domain 28 96 96 31.3 2.9e-07 1 CL0029
Cotton_A_08215_CDS 27 300 26 300 PF05910.12 DUF868 Family 2 279 279 336.4 1.5e-100 1 No_clan
Cotton_A_11697_CDS 92 146 88 148 PF07889.12 DUF1664 Coiled-coil 3 59 124 74.5 7.3e-21 1 No_clan
Cotton_A_02186_CDS 24 61 24 65 PF08879.10 WRC Domain 1 39 43 34.4 1.3e-08 1 No_clan
Cotton_A_04024_CDS 49 141 32 143 PF01370.21 Epimerase Family 82 170 241 27.1 2.6e-06 1 CL0063
Cotton_A_16464_CDS 262 326 257 329 PF04564.15 U-box Domain 5 69 73 47.1 2.1e-12 1 CL0229
Cotton_A_40208_CDS 150 251 150 252 PF02362.21 B3 Family 1 100 101 80.2 8.3e-23 1 CL0405
Cotton_A_40208_CDS 276 357 276 358 PF06507.13 Auxin_resp Family 1 82 83 111.9 1.3e-32 1 No_clan
Cotton_A_13902_CDS 5 97 4 98 PF07876.12 Dabb Domain 2 96 97 81.2 6.6e-23 1 CL0032
Cotton_A_09570_CDS 847 966 847 967 PF03468.14 XS Domain 1 112 113 80.6 1e-22 1 CL0221
Cotton_A_15215_CDS 136 314 135 315 PF01758.16 SBF Family 2 194 195 111.7 3.4e-32 1 CL0064
Cotton_A_33053_CDS 95 531 95 531 PF12899.7 Glyco_hydro_100 Domain 1 435 435 706.8 8.7e-213 1 CL0059
Cotton_A_27685_CDS 89 258 89 261 PF03634.13 TCP Family 1 153 156 142.8 1.3e-41 1 No_clan
Cotton_A_12455_CDS 386 744 385 744 PF03514.14 GRAS Family 2 374 374 422.6 1.3e-126 1 CL0063
Cotton_A_12782_CDS 58 163 58 174 PF14226.6 DIOX_N Family 2 102 118 69.5 4.1e-19 1 CL0029
Cotton_A_12782_CDS 224 321 222 321 PF03171.20 2OG-FeII_Oxy Domain 3 101 101 93.2 1.2e-26 1 CL0029
Cotton_A_19471_CDS 1 97 1 98 PF00752.17 XPG_N Family 1 100 101 101.1 3.9e-29 1 CL0280
Cotton_A_20948_CDS 52 78 52 81 PF01535.20 PPR Family 1 27 31 15.5 0.015 1 CL0020
Cotton_A_20948_CDS 154 183 154 184 PF01535.20 PPR Family 1 30 31 24.4 2.2e-05 1 CL0020
Cotton_A_20948_CDS 227 253 227 254 PF01535.20 PPR Family 4 30 31 15.6 0.014 1 CL0020
Cotton_A_20948_CDS 255 281 255 285 PF01535.20 PPR Family 1 27 31 14.8 0.026 1 CL0020
Cotton_A_20948_CDS 358 384 357 386 PF01535.20 PPR Family 2 28 31 18.4 0.0018 1 CL0020
Cotton_A_20948_CDS 434 455 432 460 PF01535.20 PPR Family 4 25 31 12.8 0.11 1 CL0020
Cotton_A_20948_CDS 463 492 462 492 PF01535.20 PPR Family 2 31 31 25.5 9.6e-06 1 CL0020
Cotton_A_20948_CDS 498 525 497 526 PF01535.20 PPR Family 2 29 31 9.6 1.2 1 CL0020
Cotton_A_20948_CDS 535 559 533 561 PF01535.20 PPR Family 3 27 31 12.2 0.17 1 CL0020
Cotton_A_31453_CDS 35 146 35 146 PF05938.11 Self-incomp_S1 Family 1 104 104 92.6 2e-26 1 No_clan
Cotton_A_35658_CDS 612 658 612 660 PF00628.29 PHD Domain 1 50 52 30.3 2.7e-07 1 CL0390
Cotton_A_07263_CDS 224 280 224 280 PF06886.11 TPX2 Family 1 57 57 75.0 4.1e-21 1 No_clan
Cotton_A_07322_CDS 6 31 2 31 PF12678.7 zf-rbx1 Domain 30 55 55 34.8 1.5e-08 1 CL0229
Cotton_A_38766_CDS 84 239 53 245 PF07690.16 MFS_1 Family 15 171 353 72.6 2.7e-20 1 CL0015
Cotton_A_38766_CDS 327 393 322 395 PF03137.20 OATP Family 456 522 546 28.8 3.7e-07 1 CL0015
Cotton_A_11669_CDS 66 189 66 198 PF13625.6 Helicase_C_3 Domain 1 117 127 108.5 2.4e-31 1 No_clan
Cotton_A_11669_CDS 287 443 285 445 PF04851.15 ResIII Family 3 169 171 50.1 3e-13 1 CL0023
Cotton_A_22195_CDS 188 306 187 306 PF03109.16 ABC1 Family 2 119 119 109.9 8.3e-32 1 CL0016
Cotton_A_21850_CDS 32 206 28 207 PF00722.21 Glyco_hydro_16 Domain 5 176 177 189.0 5e-56 1 CL0004
Cotton_A_21850_CDS 243 289 241 289 PF06955.12 XET_C Family 3 47 47 62.4 2.5e-17 1 CL0004
Cotton_A_39784_CDS 94 138 94 138 PF01479.25 S4 Domain 4 48 48 39.7 2.9e-10 1 CL0492
Cotton_A_01370_CDS 27 395 15 399 PF00999.21 Na_H_Exchanger Family 10 372 381 184.7 2.2e-54 1 CL0064
Cotton_A_14856_CDS 30 479 29 484 PF00067.22 p450 Domain 1 456 463 308.4 7.7e-92 1 No_clan
Cotton_A_28018_CDS 11 287 2 287 PF03151.16 TPT Family 13 290 290 49.4 3.8e-13 1 CL0184
Cotton_A_29479_CDS 21 91 20 91 PF07983.13 X8 Domain 2 76 76 72.4 3.7e-20 1 No_clan
Cotton_A_18229_CDS 64 151 64 152 PF03330.18 DPBB_1 Domain 1 82 83 78.6 3.2e-22 1 CL0199
Cotton_A_18229_CDS 163 240 163 240 PF01357.21 Pollen_allerg_1 Domain 1 80 80 89.6 9.7e-26 1 CL0159
Cotton_A_09050_CDS 65 148 63 150 PF00027.29 cNMP_binding Domain 3 87 89 49.2 4e-13 1 CL0029
Cotton_A_09050_CDS 226 293 225 293 PF11834.8 KHA Family 2 67 67 75.6 2.4e-21 1 No_clan
Cotton_A_13761_CDS 93 303 93 304 PF05761.14 5_nucleotid Family 1 214 458 285.6 7.1e-85 1 CL0137
Cotton_A_28633_CDS 95 178 95 325 PF08839.11 CDT1 Domain 1 89 175 51.3 1.6e-13 1 CL0123
Cotton_A_28633_CDS 481 574 481 576 PF16679.5 CDT1_C Domain 1 94 96 73.3 1.6e-20 1 CL0123
Cotton_A_26767_CDS 83 107 81 116 PF13917.6 zf-CCHC_3 Domain 3 23 41 32.4 6.4e-08 1 CL0511
Cotton_A_02153_CDS 290 381 290 382 PF00564.24 PB1 Domain 1 83 84 69.6 1.6e-19 1 CL0072
Cotton_A_08785_CDS 68 492 68 492 PF00026.23 Asp Family 1 315 315 387.2 6.1e-116 1 CL0129
Cotton_A_08785_CDS 302 334 301 334 PF03489.17 SapB_2 Family 2 34 34 47.7 1.2e-12 1 No_clan
Cotton_A_08785_CDS 364 400 363 400 PF05184.15 SapB_1 Domain 2 38 38 31.3 1.5e-07 1 No_clan
Cotton_A_10492_CDS 58 149 26 149 PF00583.25 Acetyltransf_1 Family 34 117 117 62.3 4.6e-17 1 CL0257
Cotton_A_20354_CDS 16 151 15 151 PF04048.14 Sec8_exocyst Domain 2 142 142 126.9 5.2e-37 1 CL0295
Cotton_A_01783_CDS 47 316 46 317 PF01650.18 Peptidase_C13 Family 2 255 256 361.8 2e-108 1 CL0093
Cotton_A_18467_CDS 58 436 37 437 PF01490.18 Aa_trans Family 16 408 409 230.9 2.2e-68 1 CL0062
Cotton_A_09151_CDS 107 176 106 178 PF13499.6 EF-hand_7 Domain 2 69 71 34.6 2e-08 1 CL0220
Cotton_A_11808_CDS 6 64 6 64 PF05641.12 Agenet Domain 1 61 61 46.2 4.5e-12 1 CL0049
Cotton_A_11808_CDS 274 329 271 332 PF03735.14 ENT Family 5 59 70 33.6 3e-08 1 No_clan
Cotton_A_06607_CDS 11 58 11 58 PF00249.31 Myb_DNA-binding Domain 1 46 46 66.2 2.1e-18 1 CL0123
Cotton_A_04866_CDS 13 110 7 113 PF00153.27 Mito_carr Family 8 94 97 76.9 8.7e-22 1 No_clan
Cotton_A_04866_CDS 122 209 120 212 PF00153.27 Mito_carr Family 4 94 97 71.9 3.1e-20 1 No_clan
Cotton_A_04866_CDS 227 325 225 328 PF00153.27 Mito_carr Family 3 93 97 81.7 2.7e-23 1 No_clan
Cotton_A_31613_CDS 285 312 284 315 PF14383.6 VARLMGL Domain 2 29 32 28.9 6.1e-07 1 No_clan
Cotton_A_05681_CDS 50 116 50 116 PF00076.22 RRM_1 Domain 1 70 70 45.7 4.1e-12 1 CL0221
Cotton_A_05681_CDS 135 205 135 205 PF00076.22 RRM_1 Domain 1 70 70 70.0 1.1e-19 1 CL0221
Cotton_A_05681_CDS 265 325 251 325 PF00076.22 RRM_1 Domain 7 70 70 30.1 3.2e-07 1 CL0221
Cotton_A_03659_CDS 4 86 1 87 PF03083.16 MtN3_slv Family 5 86 87 81.5 3.4e-23 1 CL0141
Cotton_A_03659_CDS 122 206 121 207 PF03083.16 MtN3_slv Family 2 86 87 95.3 1.6e-27 1 CL0141
Cotton_A_08126_CDS 43 150 42 151 PF06337.12 DUSP Domain 2 91 92 83.6 1.2e-23 1 No_clan
Cotton_A_08126_CDS 326 435 325 464 PF00443.29 UCH Family 2 120 257 121.2 5.1e-35 1 CL0125
Cotton_A_28468_CDS 86 287 86 288 PF00009.27 GTP_EFTU Domain 1 193 194 194.2 1.7e-57 1 CL0023
Cotton_A_28468_CDS 311 379 311 380 PF03144.25 GTP_EFTU_D2 Domain 1 73 74 63.4 2e-17 1 CL0575
Cotton_A_28468_CDS 384 483 384 484 PF03143.17 GTP_EFTU_D3 Domain 1 111 112 116.4 7.7e-34 1 No_clan
Cotton_A_16778_CDS 309 387 286 407 PF10213.9 MRP-S28 Family 23 101 127 62.6 4.6e-17 1 CL0337
Cotton_A_33370_CDS 149 192 148 192 PF13639.6 zf-RING_2 Domain 2 44 44 46.7 2.9e-12 1 CL0229
Cotton_A_00017_CDS 272 373 252 378 PF01544.18 CorA Family 190 290 292 32.9 4.2e-08 1 No_clan
Cotton_A_39069_CDS 205 492 196 493 PF00176.23 SNF2_N Family 55 349 350 184.8 1.8e-54 1 CL0023
Cotton_A_39069_CDS 560 672 559 672 PF00271.31 Helicase_C Family 2 111 111 68.7 5e-19 1 CL0023
Cotton_A_22748_CDS 28 68 27 70 PF06839.12 zf-GRF Domain 2 43 45 33.8 2.7e-08 1 CL0167
Cotton_A_04217_CDS 104 184 103 184 PF08241.12 Methyltransf_11 Domain 2 96 96 26.2 9.7e-06 1 CL0063
Cotton_A_30369_CDS 61 266 61 267 PF00817.20 IMS Family 1 149 150 160.1 3.6e-47 1 No_clan
Cotton_A_30369_CDS 349 484 348 488 PF11799.8 IMS_C Domain 2 111 118 60.0 3.4e-16 1 No_clan
Cotton_A_13045_CDS 13 60 13 60 PF00249.31 Myb_DNA-binding Domain 1 46 46 46.2 3.7e-12 1 CL0123
Cotton_A_13045_CDS 66 108 66 111 PF00249.31 Myb_DNA-binding Domain 1 43 46 54.3 1.1e-14 1 CL0123
Cotton_A_06104_CDS 136 394 121 396 PF07714.17 Pkinase_Tyr Domain 41 257 259 90.3 1.2e-25 1 CL0016
Cotton_A_01516_CDS 26 162 26 162 PF13716.6 CRAL_TRIO_2 Domain 1 138 138 87.9 6.4e-25 1 CL0512
Cotton_A_05799_CDS 68 257 47 306 PF02450.15 LCAT Family 27 205 392 83.5 1.7e-23 1 CL0028
Cotton_A_29319_CDS 1 374 1 375 PF02181.23 FH2 Family 27 371 372 338.7 4.4e-101 1 No_clan
Cotton_A_12595_CDS 28 276 28 281 PF00141.23 peroxidase Domain 1 223 229 243.7 1.8e-72 1 CL0617
Cotton_A_08898_CDS 45 79 41 79 PF00400.32 WD40 Repeat 5 38 38 21.5 0.00031 1 CL0186
Cotton_A_08898_CDS 84 121 83 121 PF00400.32 WD40 Repeat 2 38 38 33.9 3.8e-08 1 CL0186
Cotton_A_08898_CDS 126 163 125 163 PF00400.32 WD40 Repeat 2 38 38 31.8 1.7e-07 1 CL0186
Cotton_A_08898_CDS 198 231 195 232 PF00400.32 WD40 Repeat 5 37 38 20.8 0.00051 1 CL0186
Cotton_A_08898_CDS 241 276 238 276 PF00400.32 WD40 Repeat 4 38 38 23.1 9.5e-05 1 CL0186
Cotton_A_08898_CDS 341 767 337 768 PF04053.14 Coatomer_WDAD Family 5 444 445 437.1 8e-131 1 CL0186
Cotton_A_08898_CDS 814 1217 814 1217 PF06957.11 COPI_C Family 1 403 403 568.2 8.2e-171 1 CL0020
Cotton_A_22476_CDS 5 142 1 200 PF10536.9 PMD Domain 171 316 363 110.1 1.2e-31 1 No_clan
Cotton_A_19113_CDS 32 285 31 285 PF10160.9 Tmemb_40 Family 2 255 255 329.0 1.9e-98 1 No_clan
Cotton_A_35705_CDS 8 74 7 87 PF00160.21 Pro_isomerase Domain 2 55 158 55.8 6.2e-15 1 CL0475
Cotton_A_27120_CDS 91 152 57 152 PF02225.22 PA Family 31 89 89 36.4 3.8e-09 1 CL0364
Cotton_A_27120_CDS 536 556 535 556 PF12662.7 cEGF Domain 3 24 24 28.0 1.5e-06 1 CL0001
Cotton_A_37717_CDS 99 966 99 967 PF05911.11 FPP Coiled-coil 1 866 867 1115.3 0 1 No_clan
Cotton_A_08021_CDS 312 343 312 344 PF12854.7 PPR_1 Repeat 1 32 34 31.5 1e-07 1 CL0020
Cotton_A_08021_CDS 358 381 355 383 PF01535.20 PPR Family 5 28 31 17.9 0.0026 1 CL0020
Cotton_A_31006_CDS 91 155 90 165 PF16113.5 ECH_2 Domain 2 66 334 72.8 3.4e-20 1 CL0127
Cotton_A_31006_CDS 171 472 160 472 PF16113.5 ECH_2 Domain 46 334 334 286.1 4.6e-85 1 CL0127
Cotton_A_18510_CDS 15 58 15 59 PF16891.5 STPPase_N Family 1 47 48 66.3 2.4e-18 1 No_clan
Cotton_A_18510_CDS 64 252 61 255 PF00149.28 Metallophos Domain 5 201 204 137.2 1e-39 1 CL0163
Cotton_A_05096_CDS 80 367 80 367 PF01643.17 Acyl-ACP_TE Family 1 248 248 279.6 1.8e-83 1 CL0050
Cotton_A_06389_CDS 11 204 4 210 PF00933.21 Glyco_hydro_3 Domain 122 309 319 119.8 1.5e-34 1 CL0058
Cotton_A_06389_CDS 255 485 255 485 PF01915.22 Glyco_hydro_3_C Domain 1 204 204 176.9 4.8e-52 1 No_clan
Cotton_A_06389_CDS 549 621 549 621 PF14310.6 Fn3-like Family 1 71 71 51.5 8e-14 1 CL0159
Cotton_A_37358_CDS 105 387 105 387 PF00069.25 Pkinase Domain 1 264 264 233.2 3.4e-69 1 CL0016
Cotton_A_37377_CDS 12 164 11 165 PF04970.13 LRAT Domain 2 126 127 122.4 1.4e-35 1 CL0125
Cotton_A_15274_CDS 18 141 18 141 PF00241.20 Cofilin_ADF Domain 1 121 121 117.9 2.1e-34 1 CL0092
Cotton_A_25049_CDS 8 85 6 88 PF08700.11 Vps51 Family 3 84 87 57.3 1.2e-15 1 CL0295
Cotton_A_40142_CDS 144 231 83 231 PF00583.25 Acetyltransf_1 Family 44 117 117 28.4 1.5e-06 1 CL0257
Cotton_A_37789_CDS 12 87 2 87 PF04043.15 PMEI Domain 71 154 154 57.8 1.5e-15 1 No_clan
Cotton_A_37789_CDS 131 283 131 283 PF01095.19 Pectinesterase Family 1 156 298 231.0 1.2e-68 1 CL0268
Cotton_A_23015_CDS 8 217 5 218 PF16213.5 DCB Family 4 177 178 147.3 3.6e-43 1 No_clan
Cotton_A_23015_CDS 343 501 342 501 PF12783.7 Sec7_N Domain 2 158 158 143.0 6.8e-42 1 No_clan
Cotton_A_23015_CDS 615 796 614 796 PF01369.20 Sec7 Domain 2 183 183 249.9 1.3e-74 1 No_clan
Cotton_A_23015_CDS 1164 1246 1164 1247 PF09324.10 DUF1981 Family 1 83 84 103.7 3.5e-30 1 No_clan
Cotton_A_23015_CDS 1343 1405 1267 1417 PF16206.5 Mon2_C Family 78 140 785 35.9 2.4e-09 1 No_clan
Cotton_A_28149_CDS 5 89 5 90 PF01221.18 Dynein_light Domain 1 85 86 107.9 2.3e-31 1 No_clan
Cotton_A_34941_CDS 65 214 63 214 PF00190.22 Cupin_1 Domain 3 151 151 157.9 1.3e-46 1 CL0029
Cotton_A_29226_CDS 35 91 6 98 PF12796.7 Ank_2 Repeat 25 74 83 33.1 6.5e-08 1 CL0465
Cotton_A_01330_CDS 117 257 114 258 PF01694.22 Rhomboid Family 4 149 150 144.3 2.6e-42 1 CL0207
Cotton_A_27515_CDS 64 335 57 336 PF00069.25 Pkinase Domain 15 261 264 103.8 9.9e-30 1 CL0016
Cotton_A_08111_CDS 9 76 9 76 PF00076.22 RRM_1 Domain 1 70 70 63.2 1.5e-17 1 CL0221
Cotton_A_08111_CDS 112 174 112 175 PF00076.22 RRM_1 Domain 1 66 70 45.3 5.6e-12 1 CL0221
Cotton_A_30006_CDS 38 85 38 85 PF00249.31 Myb_DNA-binding Domain 1 46 46 48.1 9.5e-13 1 CL0123
Cotton_A_30006_CDS 91 134 91 136 PF00249.31 Myb_DNA-binding Domain 1 44 46 51.5 8.3e-14 1 CL0123
Cotton_A_17367_CDS 25 74 24 75 PF00847.20 AP2 Domain 2 53 54 42.6 5.4e-11 1 CL0081
Cotton_A_17367_CDS 251 287 247 292 PF00847.20 AP2 Domain 12 49 54 27.7 2.4e-06 1 CL0081
Cotton_A_38832_CDS 14 410 12 411 PF08801.11 Nucleoporin_N Domain 103 433 434 183.6 5.2e-54 1 CL0186
Cotton_A_38832_CDS 740 1163 695 1185 PF03177.14 Nucleoporin_C Family 211 569 596 29.2 4e-07 1 No_clan
Cotton_A_05221_CDS 53 591 53 592 PF02990.16 EMP70 Family 1 518 519 752.8 1.8e-226 1 No_clan
Cotton_A_03584_CDS 2 259 2 569 PF02463.19 SMC_N Domain 1 136 220 109.3 1.8e-31 1 CL0023
Cotton_A_03584_CDS 479 598 478 599 PF06470.13 SMC_hinge Domain 2 116 117 77.2 1.2e-21 1 No_clan
Cotton_A_29788_CDS 9 133 9 133 PF04628.13 Sedlin_N Family 1 131 131 148.9 8.4e-44 1 CL0212
Cotton_A_27719_CDS 1253 1476 1253 1476 PF02854.19 MIF4G Family 1 212 212 179.9 4.8e-53 1 CL0020
Cotton_A_27719_CDS 1717 1825 1712 1826 PF02847.17 MA3 Family 6 112 113 51.7 7.2e-14 1 CL0020
Cotton_A_11212_CDS 11 251 11 259 PF01370.21 Epimerase Family 1 231 241 100.1 1.3e-28 1 CL0063
Cotton_A_06086_CDS 28 153 27 153 PF02365.15 NAM Family 2 126 126 128.2 3.2e-37 1 No_clan
Cotton_A_05577_CDS 55 311 53 311 PF00069.25 Pkinase Domain 3 264 264 244.3 1.3e-72 1 CL0016
Cotton_A_05577_CDS 358 418 356 420 PF13499.6 EF-hand_7 Domain 3 68 71 31.4 1.9e-07 1 CL0220
Cotton_A_05577_CDS 430 492 429 492 PF13499.6 EF-hand_7 Domain 2 71 71 55.9 4.3e-15 1 CL0220
Cotton_A_21298_CDS 65 181 65 181 PF08446.11 PAS_2 Domain 1 107 107 127.8 2.5e-37 1 CL0183
Cotton_A_21298_CDS 214 398 214 398 PF01590.26 GAF Domain 1 133 133 119.4 1.6e-34 1 CL0161
Cotton_A_21298_CDS 411 584 409 588 PF00360.20 PHY Family 3 179 183 181.0 1.3e-53 1 CL0161
Cotton_A_21298_CDS 617 731 616 731 PF00989.25 PAS Domain 2 113 113 64.6 7.4e-18 1 CL0183
Cotton_A_21298_CDS 747 870 746 872 PF00989.25 PAS Domain 2 111 113 71.2 6.4e-20 1 CL0183
Cotton_A_21298_CDS 896 953 892 956 PF00512.25 HisKA Domain 5 64 67 30.8 2.2e-07 1 CL0025
Cotton_A_21298_CDS 1004 1114 1004 1116 PF02518.26 HATPase_c Domain 1 110 112 46.9 3.4e-12 1 CL0025
Cotton_A_14535_CDS 1 130 1 131 PF00235.19 Profilin Domain 1 126 127 150.6 2.4e-44 1 CL0431
Cotton_A_29450_CDS 59 100 59 110 PF08312.12 cwf21 Domain 1 42 44 35.1 1.1e-08 1 No_clan
Cotton_A_34379_CDS 19 427 19 444 PF00067.22 p450 Domain 1 441 463 242.0 1.1e-71 1 No_clan
Cotton_A_13307_CDS 8 204 7 205 PF03094.15 Mlo Family 2 189 479 290.2 2.1e-86 1 No_clan
Cotton_A_16964_CDS 39 127 12 127 PF00583.25 Acetyltransf_1 Family 31 117 117 55.3 6.8e-15 1 CL0257
Cotton_A_14499_CDS 1 120 1 120 PF12590.8 Acyl-thio_N Family 1 131 131 173.6 2.5e-51 1 No_clan
Cotton_A_14499_CDS 131 395 131 396 PF01643.17 Acyl-ACP_TE Family 1 247 248 269.0 3.1e-80 1 CL0050
Cotton_A_35779_CDS 173 277 172 283 PF00135.28 COesterase Domain 90 205 512 48.7 5.3e-13 1 CL0028
Cotton_A_30676_CDS 3 180 1 181 PF00891.18 Methyltransf_2 Domain 30 209 210 192.1 7.1e-57 1 CL0063
Cotton_A_08729_CDS 1 228 1 228 PF00141.23 peroxidase Domain 15 229 229 238.5 7.2e-71 1 CL0617
Cotton_A_33863_CDS 47 261 27 264 PF01578.20 Cytochrom_C_asm Family 43 151 214 64.7 9.5e-18 1 CL0328
Cotton_A_30682_CDS 28 63 18 66 PF00191.20 Annexin Family 18 53 66 22.5 8.7e-05 1 No_clan
Cotton_A_30682_CDS 104 141 90 157 PF00191.20 Annexin Family 14 51 66 22.4 9.5e-05 1 No_clan
Cotton_A_30682_CDS 176 241 175 242 PF00191.20 Annexin Family 2 65 66 41.6 9.5e-11 1 No_clan
Cotton_A_30682_CDS 254 318 252 318 PF00191.20 Annexin Family 3 66 66 45.6 5.3e-12 1 No_clan
Cotton_A_38593_CDS 39 492 38 496 PF00067.22 p450 Domain 2 459 463 344.0 1.3e-102 1 No_clan
Cotton_A_14851_CDS 3 35 3 36 PF04419.14 4F5 Family 1 37 38 23.9 5.9e-05 1 CL0361
Cotton_A_14851_CDS 38 75 38 75 PF12907.7 zf-met2 Family 1 38 38 69.4 2e-19 1 CL0361
Cotton_A_13934_CDS 405 450 405 451 PF07496.15 zf-CW Domain 1 47 48 52.8 2.8e-14 1 No_clan
Cotton_A_11750_CDS 206 261 205 261 PF03106.15 WRKY Domain 2 59 59 93.3 7.8e-27 1 CL0274
Cotton_A_11750_CDS 371 428 371 428 PF03106.15 WRKY Domain 1 59 59 90.7 5e-26 1 CL0274
Cotton_A_30571_CDS 516 756 516 756 PF12490.8 BCAS3 Family 1 246 246 298.6 3.3e-89 1 No_clan
Cotton_A_05826_CDS 2 69 2 69 PF00226.31 DnaJ Domain 1 63 63 87.6 4.3e-25 1 CL0392
Cotton_A_24703_CDS 78 136 77 137 PF00847.20 AP2 Domain 2 53 54 45.3 7.4e-12 1 CL0081
Cotton_A_24703_CDS 179 230 179 231 PF00847.20 AP2 Domain 1 53 54 46.2 4e-12 1 CL0081
Cotton_A_28987_CDS 46 468 18 474 PF00067.22 p450 Domain 41 457 463 176.9 6e-52 1 No_clan
Cotton_A_33654_CDS 19 85 1 87 PF01595.20 DUF21 Domain 36 107 176 36.6 3.5e-09 1 No_clan
Cotton_A_02387_CDS 125 175 119 177 PF13812.6 PPR_3 Repeat 10 60 63 17.0 0.0047 1 CL0020
Cotton_A_02387_CDS 202 245 199 248 PF13041.6 PPR_2 Repeat 4 47 50 32.0 1e-07 1 CL0020
Cotton_A_02387_CDS 274 298 274 303 PF01535.20 PPR Family 1 25 31 15.3 0.018 1 CL0020
Cotton_A_02387_CDS 311 338 311 340 PF01535.20 PPR Family 1 28 31 31.2 1.5e-07 1 CL0020
Cotton_A_02387_CDS 351 397 348 397 PF13041.6 PPR_2 Repeat 4 50 50 46.6 2.8e-12 1 CL0020
Cotton_A_02387_CDS 411 462 407 467 PF13812.6 PPR_3 Repeat 6 57 63 25.1 1.4e-05 1 CL0020
Cotton_A_02387_CDS 491 518 490 520 PF01535.20 PPR Family 2 29 31 12.8 0.11 1 CL0020
Cotton_A_21730_CDS 5 55 5 56 PF00249.31 Myb_DNA-binding Domain 1 44 46 36.7 3.4e-09 1 CL0123
Cotton_A_21730_CDS 125 181 122 186 PF00538.19 Linker_histone Domain 5 63 74 31.0 2.5e-07 1 CL0123
Cotton_A_23837_CDS 21 185 1 190 PF00067.22 p450 Domain 117 271 463 31.4 8.3e-08 1 No_clan
Cotton_A_23837_CDS 198 261 183 268 PF00067.22 p450 Domain 327 392 463 51.2 8.3e-14 1 No_clan
Cotton_A_05166_CDS 52 145 15 147 PF00583.25 Acetyltransf_1 Family 33 115 117 48.6 8.1e-13 1 CL0257
Cotton_A_10726_CDS 38 213 38 215 PF01397.21 Terpene_synth Domain 1 190 192 164.8 1.8e-48 1 No_clan
Cotton_A_31325_CDS 88 157 88 157 PF00076.22 RRM_1 Domain 1 70 70 55.1 4.8e-15 1 CL0221
Cotton_A_31325_CDS 181 237 174 241 PF13865.6 FoP_duplication Family 4 64 81 36.5 5.2e-09 1 No_clan
Cotton_A_22437_CDS 174 253 171 254 PF00439.25 Bromodomain Domain 4 83 84 82.5 1.7e-23 1 No_clan
Cotton_A_24482_CDS 13 105 12 106 PF01248.26 Ribosomal_L7Ae Domain 2 94 95 86.0 1e-24 1 CL0101
Cotton_A_39714_CDS 46 302 45 302 PF10275.9 Peptidase_C65 Family 2 246 246 292.2 2.9e-87 1 CL0125
Cotton_A_35010_CDS 26 55 25 64 PF17830.1 STI1 Domain 2 31 55 23.4 4.3e-05 1 No_clan
Cotton_A_30202_CDS 37 393 37 394 PF12819.7 Malectin_like Domain 1 335 336 124.3 6.1e-36 1 CL0202
Cotton_A_30202_CDS 489 760 485 761 PF07714.17 Pkinase_Tyr Domain 5 258 259 159.8 7.4e-47 1 CL0016
Cotton_A_12412_CDS 192 300 191 305 PF03109.16 ABC1 Family 2 111 119 99.0 2e-28 1 CL0016
Cotton_A_11273_CDS 23 144 18 144 PF04852.12 DUF640 Family 4 126 126 218.4 2.3e-65 1 No_clan
Cotton_A_37765_CDS 2 187 2 187 PF17135.4 Ribosomal_L18 Family 1 187 187 310.2 3.4e-93 1 CL0588
Cotton_A_10786_CDS 31 493 30 506 PF00067.22 p450 Domain 3 448 463 188.6 1.7e-55 1 No_clan
Cotton_A_00137_CDS 13 238 13 238 PF00244.20 14-3-3 Domain 1 222 222 337.0 4.4e-101 1 No_clan
Cotton_A_11810_CDS 25 180 25 183 PF04862.12 DUF642 Domain 1 151 157 209.0 3e-62 1 CL0202
Cotton_A_35238_CDS 846 992 845 992 PF04096.14 Nucleoporin2 Family 2 149 149 156.5 5.2e-46 1 CL0661
Cotton_A_19598_CDS 70 129 69 129 PF13855.6 LRR_8 Repeat 2 61 61 45.0 6.5e-12 1 CL0022
Cotton_A_19598_CDS 279 338 278 338 PF13855.6 LRR_8 Repeat 2 61 61 30.1 3e-07 1 CL0022
Cotton_A_10471_CDS 63 146 62 147 PF03330.18 DPBB_1 Domain 2 82 83 76.4 1.6e-21 1 CL0199
Cotton_A_10471_CDS 158 235 158 235 PF01357.21 Pollen_allerg_1 Domain 1 80 80 102.5 9e-30 1 CL0159
Cotton_A_35219_CDS 75 253 73 253 PF11833.8 CPP1-like Family 3 197 197 195.2 9.2e-58 1 No_clan
Cotton_A_27092_CDS 35 73 33 73 PF08263.12 LRRNT_2 Family 3 41 41 32.1 1e-07 1 No_clan
Cotton_A_27092_CDS 169 183 167 185 PF13516.6 LRR_6 Repeat 3 17 24 10.0 0.78 1 CL0022
Cotton_A_27092_CDS 194 244 194 245 PF12799.7 LRR_4 Repeat 1 43 44 30.3 3.9e-07 1 CL0022
Cotton_A_27092_CDS 406 449 389 449 PF13855.6 LRR_8 Repeat 18 61 61 29.4 5.1e-07 1 CL0022
Cotton_A_27092_CDS 738 757 738 759 PF00560.33 LRR_1 Repeat 1 20 23 9.3 1.9 1 CL0022
Cotton_A_27092_CDS 785 843 784 844 PF13855.6 LRR_8 Repeat 2 60 61 29.5 4.6e-07 1 CL0022
Cotton_A_27092_CDS 940 999 939 999 PF13855.6 LRR_8 Repeat 2 61 61 39.3 4.1e-10 1 CL0022
Cotton_A_10206_CDS 256 413 246 427 PF00160.21 Pro_isomerase Domain 12 142 158 90.0 1.9e-25 1 CL0475
Cotton_A_12831_CDS 144 177 144 177 PF02375.17 JmjN Family 1 34 34 61.2 6.4e-17 1 CL0029
Cotton_A_12831_CDS 389 505 389 505 PF02373.22 JmjC Domain 1 114 114 151.5 1.1e-44 1 CL0029
Cotton_A_12831_CDS 612 662 612 664 PF02928.16 zf-C5HC2 Domain 1 52 54 44.8 1.2e-11 1 No_clan
Cotton_A_12831_CDS 950 994 946 994 PF05964.14 FYRN Family 6 51 51 35.8 5.3e-09 1 No_clan
Cotton_A_12831_CDS 1001 1085 1001 1095 PF05965.14 FYRC Family 1 79 84 76.9 1e-21 1 No_clan
Cotton_A_26397_CDS 44 81 43 86 PF00646.33 F-box Domain 2 39 48 23.5 3.7e-05 1 CL0271
Cotton_A_33788_CDS 3 75 1 87 PF12796.7 Ank_2 Repeat 8 68 83 28.7 1.5e-06 1 CL0465
Cotton_A_33788_CDS 172 292 171 294 PF13962.6 PGG Domain 2 113 116 56.2 2.7e-15 1 No_clan
Cotton_A_33788_CDS 341 365 333 365 PF03765.15 CRAL_TRIO_N Domain 30 54 54 24.8 1.8e-05 1 CL0214
Cotton_A_04414_CDS 11 270 9 278 PF03514.14 GRAS Family 3 266 374 79.4 2.5e-22 1 CL0063
Cotton_A_05931_CDS 28 80 27 81 PF04770.12 ZF-HD_dimer Family 2 54 55 105.7 1.1e-30 1 No_clan
Cotton_A_13148_CDS 70 143 66 143 PF03330.18 DPBB_1 Domain 6 83 83 51.1 1.3e-13 1 CL0199
Cotton_A_13148_CDS 151 228 151 235 PF01357.21 Pollen_allerg_1 Domain 1 73 80 54.2 1.1e-14 1 CL0159
Cotton_A_03458_CDS 32 69 29 69 PF08263.12 LRRNT_2 Family 4 41 41 29.7 6.1e-07 1 No_clan
Cotton_A_03458_CDS 207 266 206 266 PF13855.6 LRR_8 Repeat 2 61 61 28.2 1.2e-06 1 CL0022
Cotton_A_03458_CDS 327 349 327 349 PF00560.33 LRR_1 Repeat 1 23 23 10.7 0.7 1 CL0022
Cotton_A_03458_CDS 374 434 373 434 PF13855.6 LRR_8 Repeat 2 61 61 31.4 1.2e-07 1 CL0022
Cotton_A_03458_CDS 449 508 447 508 PF13855.6 LRR_8 Repeat 3 61 61 36.2 3.6e-09 1 CL0022
Cotton_A_03458_CDS 545 560 543 560 PF13516.6 LRR_6 Repeat 3 18 24 10.9 0.39 1 CL0022
Cotton_A_03458_CDS 664 683 664 685 PF00560.33 LRR_1 Repeat 1 20 23 13.6 0.079 1 CL0022
Cotton_A_03458_CDS 714 772 712 772 PF13855.6 LRR_8 Repeat 3 61 61 28.1 1.2e-06 1 CL0022
Cotton_A_03458_CDS 862 919 861 919 PF13855.6 LRR_8 Repeat 4 61 61 35.1 8.2e-09 1 CL0022
Cotton_A_13287_CDS 9 80 9 80 PF08079.12 Ribosomal_L30_N Domain 1 72 72 80.0 1.1e-22 1 No_clan
Cotton_A_13287_CDS 85 135 85 135 PF00327.20 Ribosomal_L30 Domain 1 51 51 71.8 3.1e-20 1 No_clan
Cotton_A_31122_CDS 31 204 27 205 PF04525.12 LOR Domain 13 186 187 152.7 8.2e-45 1 CL0395
Cotton_A_18822_CDS 60 104 54 105 PF04570.14 zf-FLZ Domain 9 53 54 79.4 1e-22 1 CL0175
Cotton_A_39012_CDS 9 369 9 369 PF01266.24 DAO Domain 1 352 352 148.0 5.2e-43 1 CL0063
Cotton_A_17803_CDS 38 146 38 149 PF00072.24 Response_reg Domain 1 109 112 79.3 2.2e-22 1 CL0304
Cotton_A_17803_CDS 218 268 218 268 PF00249.31 Myb_DNA-binding Domain 1 46 46 32.5 7.1e-08 1 CL0123
Cotton_A_35936_CDS 3 151 2 153 PF00190.22 Cupin_1 Domain 2 149 151 171.1 1.1e-50 1 CL0029
Cotton_A_28941_CDS 101 157 19 158 PF14510.6 ABC_trans_N Domain 30 80 81 32.0 1.4e-07 1 No_clan
Cotton_A_28941_CDS 181 364 181 365 PF00005.27 ABC_tran Domain 1 136 137 55.5 8.3e-15 1 CL0023
Cotton_A_28941_CDS 517 751 516 751 PF01061.24 ABC2_membrane Family 2 210 210 86.5 1.7e-24 1 CL0181
Cotton_A_28941_CDS 756 818 756 818 PF08370.11 PDR_assoc Family 1 65 65 87.0 5.1e-25 1 No_clan
Cotton_A_28941_CDS 895 1046 894 1046 PF00005.27 ABC_tran Domain 2 137 137 61.4 1.3e-16 1 CL0023
Cotton_A_28941_CDS 1191 1429 1191 1429 PF01061.24 ABC2_membrane Family 1 210 210 178.4 1.2e-52 1 CL0181
Cotton_A_16616_CDS 69 132 69 133 PF13499.6 EF-hand_7 Domain 1 70 71 30.1 5e-07 1 CL0220
Cotton_A_00789_CDS 173 374 167 376 PF12146.8 Hydrolase_4 Family 57 237 239 33.9 1.8e-08 1 CL0028
Cotton_A_00789_CDS 508 602 495 663 PF03982.13 DAGAT Family 121 217 297 28.7 6.1e-07 1 CL0228
Cotton_A_24430_CDS 5 57 3 71 PF00722.21 Glyco_hydro_16 Domain 3 54 177 21.7 0.00012 1 CL0004
Cotton_A_08976_CDS 170 334 170 338 PF00063.21 Myosin_head Domain 1 173 677 238.8 1e-70 1 CL0023
Cotton_A_08976_CDS 340 768 336 768 PF00063.21 Myosin_head Domain 239 677 677 458.0 4.9e-137 1 CL0023
Cotton_A_08976_CDS 786 803 783 803 PF00612.27 IQ Motif 4 21 21 12.0 0.14 1 CL0220
Cotton_A_08976_CDS 807 823 806 824 PF00612.27 IQ Motif 2 18 21 14.5 0.023 1 CL0220
Cotton_A_02423_CDS 257 625 256 625 PF03514.14 GRAS Family 2 374 374 361.9 3.6e-108 1 CL0063
Cotton_A_13574_CDS 157 321 132 321 PF13532.6 2OG-FeII_Oxy_2 Domain 54 196 196 62.0 8.2e-17 1 CL0029
Cotton_A_23178_CDS 8 346 7 349 PF00009.27 GTP_EFTU Domain 2 191 194 177.2 2.6e-52 1 CL0023
Cotton_A_23178_CDS 440 518 439 519 PF03144.25 GTP_EFTU_D2 Domain 3 73 74 38.1 1.5e-09 1 CL0575
Cotton_A_23178_CDS 536 603 534 607 PF14492.6 EFG_II Domain 4 71 75 28.2 1.5e-06 1 CL0437
Cotton_A_23178_CDS 886 970 885 972 PF00679.24 EFG_C Domain 2 85 89 63.5 1.4e-17 1 CL0437
Cotton_A_12895_CDS 118 355 117 405 PF00481.21 PP2C Family 3 234 258 219.2 7.3e-65 1 CL0238
Cotton_A_01465_CDS 13 73 10 74 PF13499.6 EF-hand_7 Domain 4 70 71 51.2 1.3e-13 1 CL0220
Cotton_A_01465_CDS 83 146 83 147 PF13499.6 EF-hand_7 Domain 1 70 71 66.5 2.1e-18 1 CL0220
Cotton_A_12828_CDS 67 108 60 108 PF13857.6 Ank_5 Repeat 15 56 56 29.4 7.1e-07 1 CL0465
Cotton_A_12828_CDS 184 616 184 616 PF11904.8 GPCR_chapero_1 Domain 1 307 307 343.5 1.2e-102 1 No_clan
Cotton_A_10921_CDS 30 105 30 105 PF05922.16 Inhibitor_I9 Domain 1 82 82 60.8 1.5e-16 1 CL0570
Cotton_A_10921_CDS 129 587 128 600 PF00082.22 Peptidase_S8 Domain 2 285 298 166.7 7e-49 1 No_clan
Cotton_A_10921_CDS 366 455 365 455 PF02225.22 PA Family 2 89 89 40.8 1.7e-10 1 CL0364
Cotton_A_10921_CDS 655 752 655 753 PF17766.1 fn3_6 Domain 1 98 99 88.7 2.3e-25 1 CL0159
Cotton_A_38133_CDS 15 170 5 170 PF00083.24 Sugar_tr Family 44 202 452 115.5 2.8e-33 1 CL0015
Cotton_A_22493_CDS 28 327 28 329 PF00124.19 Photo_RC Family 1 258 260 327.7 4.1e-98 1 No_clan
Cotton_A_11541_CDS 60 316 60 316 PF02485.21 Branch Family 1 247 247 271.2 7.9e-81 1 CL0110
Cotton_A_02013_CDS 54 107 53 108 PF00646.33 F-box Domain 2 47 48 34.9 9.6e-09 1 CL0271
Cotton_A_02013_CDS 118 409 118 409 PF01167.18 Tub Domain 1 241 241 295.2 4e-88 1 CL0395
Cotton_A_26100_CDS 11 300 11 309 PF00124.19 Photo_RC Family 1 256 260 254.0 1.3e-75 1 No_clan
Cotton_A_36032_CDS 1 36 1 36 PF01701.18 PSI_PsaJ Family 1 36 37 71.8 4.7e-20 1 No_clan
Cotton_A_36032_CDS 53 109 53 109 PF00471.20 Ribosomal_L33 Family 1 47 47 76.9 1.2e-21 1 CL0167
Cotton_A_40967_CDS 23 58 5 62 PF07647.17 SAM_2 Domain 24 60 66 26.4 5.4e-06 1 CL0003
Cotton_A_29011_CDS 96 370 93 373 PF00069.25 Pkinase Domain 4 259 264 156.4 9.1e-46 1 CL0016
Cotton_A_16584_CDS 82 133 80 133 PF04570.14 zf-FLZ Domain 3 54 54 86.7 5e-25 1 CL0175
Cotton_A_11510_CDS 1771 2133 1766 2144 PF04357.13 TamB Family 6 367 383 54.6 1e-14 1 CL0401
Cotton_A_10897_CDS 15 192 4 205 PF15251.6 DUF4588 Family 53 224 252 29.7 5.3e-07 1 No_clan
Cotton_A_22168_CDS 23 251 23 251 PF00230.20 MIP Family 1 227 227 252.7 3.3e-75 1 No_clan
Cotton_A_08213_CDS 16 71 16 71 PF04927.12 SMP Family 1 59 59 63.9 1.4e-17 1 No_clan
Cotton_A_08213_CDS 132 189 132 190 PF04927.12 SMP Family 1 58 59 77.6 7.1e-22 1 No_clan
Cotton_A_08213_CDS 198 255 197 256 PF04927.12 SMP Family 2 58 59 70.9 9.1e-20 1 No_clan
Cotton_A_35215_CDS 58 335 50 336 PF00069.25 Pkinase Domain 9 261 264 104.0 8.2e-30 1 CL0016
Cotton_A_34754_CDS 63 140 62 140 PF03330.18 DPBB_1 Domain 2 83 83 51.4 1e-13 1 CL0199
Cotton_A_34754_CDS 152 234 152 234 PF01357.21 Pollen_allerg_1 Domain 1 80 80 67.5 8e-19 1 CL0159
Cotton_A_10278_CDS 26 63 24 63 PF08263.12 LRRNT_2 Family 3 41 41 40.2 3.1e-10 1 No_clan
Cotton_A_10278_CDS 632 918 631 921 PF00069.25 Pkinase Domain 2 258 264 141.2 3.9e-41 1 CL0016
Cotton_A_18514_CDS 44 101 42 101 PF00403.26 HMA Domain 3 62 62 45.9 5.9e-12 1 No_clan
Cotton_A_31311_CDS 14 62 14 62 PF00249.31 Myb_DNA-binding Domain 1 46 46 49.0 5e-13 1 CL0123
Cotton_A_31311_CDS 69 111 68 113 PF00249.31 Myb_DNA-binding Domain 2 44 46 40.9 1.7e-10 1 CL0123
Cotton_A_18208_CDS 29 134 28 135 PF13947.6 GUB_WAK_bind Domain 2 105 106 65.0 8.6e-18 1 No_clan
Cotton_A_07452_CDS 49 161 49 164 PF00485.18 PRK Domain 1 123 197 54.7 1.1e-14 1 CL0023
Cotton_A_28274_CDS 47 124 47 130 PF01988.19 VIT1 Family 1 79 215 94.0 1.1e-26 1 No_clan
Cotton_A_28274_CDS 126 213 119 214 PF01988.19 VIT1 Family 127 214 215 64.8 9.8e-18 1 No_clan
Cotton_A_31367_CDS 35 105 30 109 PF00011.21 HSP20 Family 11 90 102 22.4 0.0001 1 CL0190
Cotton_A_07409_CDS 257 301 254 301 PF00010.26 HLH Domain 7 53 53 24.0 2.8e-05 1 No_clan
Cotton_A_00626_CDS 12 385 11 385 PF07690.16 MFS_1 Family 2 353 353 93.4 1.2e-26 1 CL0015
Cotton_A_01362_CDS 60 112 60 112 PF00010.26 HLH Domain 1 53 53 34.9 1.1e-08 1 No_clan
Cotton_A_05539_CDS 121 273 121 273 PF00005.27 ABC_tran Domain 1 137 137 86.6 2.1e-24 1 CL0023
Cotton_A_05539_CDS 434 641 432 641 PF01061.24 ABC2_membrane Family 4 210 210 140.7 4e-41 1 CL0181
Cotton_A_10616_CDS 24 83 23 83 PF15459.6 RRP14 Family 2 62 62 73.6 1.5e-20 1 No_clan
Cotton_A_10616_CDS 144 321 130 323 PF04935.12 SURF6 Family 13 197 199 79.5 2.9e-22 1 No_clan
Cotton_A_05745_CDS 60 160 60 174 PF14226.6 DIOX_N Family 1 103 118 72.4 5.2e-20 1 CL0029
Cotton_A_05745_CDS 215 310 211 310 PF03171.20 2OG-FeII_Oxy Domain 7 101 101 91.7 3.2e-26 1 CL0029
Cotton_A_21420_CDS 251 620 249 620 PF03514.14 GRAS Family 3 374 374 368.3 3.9e-110 1 CL0063
Cotton_A_01184_CDS 12 464 11 468 PF02458.15 Transferase Family 3 429 434 202.6 8.4e-60 1 CL0149
Cotton_A_00762_CDS 13 465 12 498 PF03094.15 Mlo Family 2 455 479 574.7 1.2e-172 1 No_clan
Cotton_A_28459_CDS 53 207 53 207 PF04043.15 PMEI Domain 1 154 154 113.7 9.8e-33 1 No_clan
Cotton_A_17466_CDS 67 214 59 223 PF00664.23 ABC_membrane Family 4 154 274 53.1 3.6e-14 1 CL0241
Cotton_A_17466_CDS 391 536 391 536 PF00005.27 ABC_tran Domain 1 137 137 100.2 1.3e-28 1 CL0023
Cotton_A_15674_CDS 88 242 88 243 PF14566.6 PTPlike_phytase Domain 1 155 156 178.4 1e-52 1 CL0031
Cotton_A_15674_CDS 506 662 506 662 PF14566.6 PTPlike_phytase Domain 1 156 156 181.5 1.1e-53 1 CL0031
Cotton_A_15674_CDS 945 1099 944 1100 PF14566.6 PTPlike_phytase Domain 2 153 156 111.0 5.9e-32 1 CL0031
Cotton_A_02400_CDS 5 141 5 142 PF00179.26 UQ_con Domain 1 139 140 181.8 4.7e-54 1 CL0208
Cotton_A_17732_CDS 269 366 268 369 PF00855.17 PWWP Domain 2 93 96 46.2 4.4e-12 1 CL0049
Cotton_A_17732_CDS 463 516 463 517 PF00628.29 PHD Domain 1 51 52 33.8 2.3e-08 1 CL0390
Cotton_A_17732_CDS 692 798 689 798 PF13832.6 zf-HC5HC2H_2 Domain 8 110 110 85.5 2.6e-24 1 CL0390
Cotton_A_17732_CDS 931 1036 931 1037 PF00856.28 SET Family 1 168 169 67.2 2.2e-18 1 No_clan
Cotton_A_14316_CDS 35 61 35 62 PF05678.14 VQ Motif 1 27 28 45.0 5.2e-12 1 No_clan
Cotton_A_23770_CDS 26 166 25 195 PF00106.25 adh_short Domain 2 141 195 112.1 2.2e-32 1 CL0063
Cotton_A_23770_CDS 213 257 206 261 PF00106.25 adh_short Domain 146 190 195 26.2 4.8e-06 1 CL0063
Cotton_A_17210_CDS 64 189 47 202 PF00171.22 Aldedh Family 89 217 462 97.5 6.5e-28 1 CL0099
Cotton_A_09518_CDS 70 215 69 215 PF04043.15 PMEI Domain 2 154 154 68.4 8.9e-19 1 No_clan
Cotton_A_09518_CDS 262 568 262 568 PF01095.19 Pectinesterase Family 1 298 298 407.8 1.8e-122 1 CL0268
Cotton_A_22575_CDS 11 112 11 113 PF09177.11 Syntaxin-6_N Domain 1 98 99 56.2 3.8e-15 1 No_clan
Cotton_A_26116_CDS 18 92 17 99 PF00082.22 Peptidase_S8 Domain 2 75 298 28.2 1e-06 1 No_clan
Cotton_A_00841_CDS 3 81 1 82 PF02365.15 NAM Family 44 125 126 31.0 4.1e-07 1 No_clan
Cotton_A_34281_CDS 267 319 267 319 PF05739.19 SNARE Family 1 53 53 58.9 3.5e-16 1 No_clan
Cotton_A_13229_CDS 12 99 11 100 PF03083.16 MtN3_slv Family 2 86 87 81.7 3e-23 1 CL0141
Cotton_A_13229_CDS 136 220 135 221 PF03083.16 MtN3_slv Family 2 86 87 85.9 1.5e-24 1 CL0141
Cotton_A_19301_CDS 133 180 131 180 PF00010.26 HLH Domain 4 53 53 34.6 1.4e-08 1 No_clan
Cotton_A_40160_CDS 32 70 31 71 PF08263.12 LRRNT_2 Family 2 40 41 44.2 1.7e-11 1 No_clan
Cotton_A_40160_CDS 304 574 303 576 PF00069.25 Pkinase Domain 2 260 264 145.7 1.6e-42 1 CL0016
Cotton_A_25268_CDS 102 144 102 144 PF03790.13 KNOX1 Family 1 43 43 83.3 7.1e-24 1 No_clan
Cotton_A_25268_CDS 157 201 155 202 PF03791.13 KNOX2 Family 3 47 48 78.3 2.2e-22 1 No_clan
Cotton_A_25268_CDS 245 266 245 266 PF03789.13 ELK Domain 1 22 22 41.2 1.2e-10 1 No_clan
Cotton_A_25268_CDS 285 324 285 324 PF05920.11 Homeobox_KN Family 1 40 40 60.1 1.4e-16 1 CL0123
Cotton_A_25510_CDS 407 498 398 500 PF00307.31 CH Domain 23 107 109 27.1 3.7e-06 1 CL0188
Cotton_A_25510_CDS 672 690 671 691 PF00612.27 IQ Motif 2 20 21 17.1 0.0034 1 CL0220
Cotton_A_25510_CDS 804 822 803 823 PF00612.27 IQ Motif 2 20 21 21.3 0.00015 1 CL0220
Cotton_A_25510_CDS 870 887 868 888 PF00612.27 IQ Motif 3 20 21 20.6 0.00025 1 CL0220
Cotton_A_25510_CDS 928 945 927 946 PF00612.27 IQ Motif 3 20 21 21.0 0.00019 1 CL0220
Cotton_A_25510_CDS 950 967 949 968 PF00612.27 IQ Motif 2 19 21 21.8 9.7e-05 1 CL0220
Cotton_A_25510_CDS 999 1017 998 1018 PF00612.27 IQ Motif 2 20 21 23.7 2.4e-05 1 CL0220
Cotton_A_25510_CDS 1024 1039 1021 1041 PF00612.27 IQ Motif 4 19 21 18.2 0.0015 1 CL0220
Cotton_A_16251_CDS 108 192 106 195 PF00153.27 Mito_carr Family 4 94 97 72.0 2.9e-20 1 No_clan
Cotton_A_16251_CDS 200 288 199 290 PF00153.27 Mito_carr Family 2 95 97 82.4 1.7e-23 1 No_clan
Cotton_A_16251_CDS 295 387 293 388 PF00153.27 Mito_carr Family 3 96 97 81.8 2.4e-23 1 No_clan
Cotton_A_03918_CDS 3 337 3 337 PF12819.7 Malectin_like Domain 1 336 336 239.7 4.8e-71 1 CL0202
Cotton_A_22824_CDS 35 68 30 68 PF08263.12 LRRNT_2 Family 6 41 41 25.5 1.2e-05 1 No_clan
Cotton_A_22824_CDS 98 156 97 156 PF13855.6 LRR_8 Repeat 2 61 61 29.7 4e-07 1 CL0022
Cotton_A_22824_CDS 569 591 569 591 PF00560.33 LRR_1 Repeat 1 23 23 15.2 0.023 1 CL0022
Cotton_A_22824_CDS 734 1000 732 1002 PF00069.25 Pkinase Domain 3 259 264 152.5 1.4e-44 1 CL0016
Cotton_A_20043_CDS 2 114 1 116 PF07732.15 Cu-oxidase_3 Domain 3 117 119 141.3 1.3e-41 1 CL0026
Cotton_A_20043_CDS 127 278 126 279 PF00394.22 Cu-oxidase Domain 2 158 159 144.4 3.2e-42 1 CL0026
Cotton_A_20043_CDS 398 493 371 494 PF07731.14 Cu-oxidase_2 Domain 23 111 137 93.6 8.2e-27 1 CL0026
Cotton_A_05466_CDS 59 391 57 392 PF17652.1 Glyco_hydro81C Domain 3 348 349 287.6 1.4e-85 1 CL0059
Cotton_A_28944_CDS 79 195 74 226 PF01925.19 TauE Family 3 110 236 38.5 9.6e-10 1 CL0292
Cotton_A_28944_CDS 317 431 249 442 PF01925.19 TauE Family 117 230 236 39.1 6.1e-10 1 CL0292
Cotton_A_28476_CDS 101 147 101 203 PF02727.16 Cu_amine_oxidN2 Domain 1 45 87 22.6 9.1e-05 1 CL0047
Cotton_A_28476_CDS 226 330 226 330 PF02728.16 Cu_amine_oxidN3 Domain 1 101 101 109.0 1.2e-31 1 CL0047
Cotton_A_28476_CDS 355 533 355 537 PF01179.20 Cu_amine_oxid Domain 1 175 410 244.8 1.5e-72 1 CL0103
Cotton_A_28476_CDS 552 796 545 796 PF01179.20 Cu_amine_oxid Domain 165 410 410 254.0 2.3e-75 1 CL0103
Cotton_A_32965_CDS 2 80 1 81 PF02152.18 FolB Domain 34 110 111 64.0 1.7e-17 1 CL0334
Cotton_A_14956_CDS 31 78 3 78 PF12609.8 DUF3774 Family 36 74 74 38.2 2.2e-09 1 No_clan
Cotton_A_17417_CDS 43 360 42 360 PF00332.18 Glyco_hydro_17 Domain 2 313 313 282.1 6.7e-84 1 CL0058
Cotton_A_12131_CDS 63 320 63 323 PF00685.27 Sulfotransfer_1 Domain 1 264 267 204.5 2e-60 1 CL0023
Cotton_A_09654_CDS 10 57 10 57 PF00319.18 SRF-TF Domain 1 48 48 91.7 1.4e-26 1 No_clan
Cotton_A_09654_CDS 59 103 51 116 PF01486.17 K-box Family 27 71 93 46.6 2.8e-12 1 No_clan
Cotton_A_28024_CDS 5 39 3 43 PF15697.5 DUF4666 Family 3 37 111 48.3 1.4e-12 1 No_clan
Cotton_A_28024_CDS 39 87 33 88 PF15697.5 DUF4666 Family 63 110 111 45.1 1.4e-11 1 No_clan
Cotton_A_27280_CDS 2 52 1 52 PF13855.6 LRR_8 Repeat 11 61 61 33.0 3.7e-08 1 CL0022
Cotton_A_29090_CDS 40 424 39 428 PF00999.21 Na_H_Exchanger Family 2 378 381 214.3 2.3e-63 1 CL0064
Cotton_A_04987_CDS 125 207 112 207 PF01477.23 PLAT Domain 25 117 117 30.1 5.7e-07 1 CL0321
Cotton_A_04987_CDS 220 869 220 869 PF00305.19 Lipoxygenase Domain 1 674 674 933.5 7.2e-281 1 No_clan
Cotton_A_07726_CDS 31 157 30 158 PF04859.12 DUF641 Family 2 127 128 157.9 1.4e-46 1 No_clan
Cotton_A_25048_CDS 255 507 254 507 PF00425.18 Chorismate_bind Family 2 258 258 192.8 7.9e-57 1 No_clan
Cotton_A_00544_CDS 219 248 212 249 PF00400.32 WD40 Repeat 9 37 38 16.1 0.016 1 CL0186
Cotton_A_00544_CDS 254 290 253 290 PF00400.32 WD40 Repeat 2 38 38 20.3 0.00071 1 CL0186
Cotton_A_00544_CDS 311 337 297 338 PF00400.32 WD40 Repeat 11 37 38 15.0 0.035 1 CL0186
Cotton_A_00544_CDS 347 378 343 379 PF00400.32 WD40 Repeat 5 37 38 18.3 0.0032 1 CL0186
Cotton_A_00544_CDS 387 432 386 433 PF00400.32 WD40 Repeat 2 37 38 24.7 3e-05 1 CL0186
Cotton_A_16670_CDS 205 266 201 267 PF12174.8 RST Domain 5 66 67 72.0 2.9e-20 1 No_clan
Cotton_A_16670_CDS 631 929 631 930 PF05236.14 TAF4 Family 1 276 277 278.9 5.7e-83 1 CL0012
Cotton_A_16735_CDS 73 127 72 127 PF14416.6 PMR5N Domain 2 53 53 48.3 9.5e-13 1 No_clan
Cotton_A_16735_CDS 128 415 128 416 PF13839.6 PC-Esterase Family 1 282 283 233.1 5.3e-69 1 CL0264
Cotton_A_23688_CDS 39 87 38 97 PF00013.29 KH_1 Domain 2 51 66 44.4 1e-11 1 CL0007
Cotton_A_23688_CDS 144 214 143 215 PF00013.29 KH_1 Domain 2 65 66 50.6 1.2e-13 1 CL0007
Cotton_A_23688_CDS 314 365 313 371 PF00013.29 KH_1 Domain 2 54 66 46.8 1.9e-12 1 CL0007
Cotton_A_23688_CDS 394 460 394 462 PF00013.29 KH_1 Domain 1 64 66 51.5 6.4e-14 1 CL0007
Cotton_A_23688_CDS 559 622 559 623 PF00013.29 KH_1 Domain 1 65 66 49.4 2.9e-13 1 CL0007
Cotton_A_19915_CDS 29 318 29 327 PF00124.19 Photo_RC Family 1 256 260 253.8 1.5e-75 1 No_clan
Cotton_A_32396_CDS 41 106 36 107 PF00240.23 ubiquitin Domain 7 71 72 46.9 1.7e-12 1 CL0072
Cotton_A_32396_CDS 112 184 112 185 PF00240.23 ubiquitin Domain 1 71 72 34.7 1.1e-08 1 CL0072
Cotton_A_32396_CDS 280 347 280 355 PF00454.27 PI3_PI4_kinase Family 1 74 250 36.1 6e-09 1 CL0016
Cotton_A_39779_CDS 19 97 19 97 PF03134.19 TB2_DP1_HVA22 Family 1 77 77 83.0 1e-23 1 No_clan
Cotton_A_29947_CDS 561 647 561 652 PF00855.17 PWWP Domain 1 94 96 63.4 1.9e-17 1 CL0049
Cotton_A_20939_CDS 61 219 61 221 PF01554.18 MatE Family 1 159 161 92.8 1.7e-26 1 CL0222
Cotton_A_20939_CDS 281 414 280 415 PF01554.18 MatE Family 2 133 161 72.3 3.4e-20 1 CL0222
Cotton_A_40410_CDS 321 570 232 570 PF04484.12 QWRF Family 47 300 300 278.7 7.5e-83 1 No_clan
Cotton_A_08160_CDS 14 83 12 83 PF07765.12 KIP1 Family 4 74 74 55.3 5.3e-15 1 No_clan
Cotton_A_16881_CDS 137 175 137 182 PF07797.14 DUF1639 Family 1 38 50 25.6 8.7e-06 1 No_clan
Cotton_A_32435_CDS 66 264 66 265 PF03798.16 TRAM_LAG1_CLN8 Domain 1 197 198 141.0 3.9e-41 1 No_clan
Cotton_A_05691_CDS 155 208 154 208 PF14416.6 PMR5N Domain 2 53 53 55.8 4.2e-15 1 No_clan
Cotton_A_05691_CDS 211 458 209 458 PF13839.6 PC-Esterase Family 3 242 283 194.7 2.7e-57 1 CL0264
Cotton_A_31457_CDS 43 95 34 96 PF08544.13 GHMP_kinases_C Family 10 65 85 25.9 9.4e-06 1 CL0677
Cotton_A_28002_CDS 36 85 35 87 PF11708.8 Slu7 Domain 2 51 269 33.8 2.9e-08 1 No_clan
Cotton_A_00518_CDS 11 370 2 370 PF01222.17 ERG4_ERG24 Family 65 432 432 314.7 8.7e-94 1 CL0115
Cotton_A_33511_CDS 39 101 39 104 PF00067.22 p450 Domain 1 65 463 32.7 3.2e-08 1 No_clan
Cotton_A_33511_CDS 98 207 95 214 PF00067.22 p450 Domain 348 454 463 88.4 4.3e-25 1 No_clan
Cotton_A_20029_CDS 104 238 103 238 PF04116.13 FA_hydroxylase Family 2 133 133 100.5 8.8e-29 1 No_clan
Cotton_A_06097_CDS 76 267 76 289 PF01266.24 DAO Domain 1 178 352 100.3 1.6e-28 1 CL0063
Cotton_A_27510_CDS 97 256 97 256 PF04759.13 DUF617 Family 1 163 163 232.8 2e-69 1 No_clan
Cotton_A_27487_CDS 15 58 8 59 PF04570.14 zf-FLZ Domain 9 53 54 75.9 1.2e-21 1 CL0175
Cotton_A_34948_CDS 27 354 27 354 PF00657.22 Lipase_GDSL Family 1 200 200 109.8 1.7e-31 1 CL0264
Cotton_A_20994_CDS 30 184 29 186 PF04199.13 Cyclase Family 2 134 136 76.0 3.1e-21 1 CL0364
Cotton_A_09524_CDS 59 390 58 390 PF07992.14 Pyr_redox_2 Domain 2 294 294 210.4 3.3e-62 1 CL0063
Cotton_A_17423_CDS 11 264 11 264 PF00069.25 Pkinase Domain 1 264 264 239.0 5.6e-71 1 CL0016
Cotton_A_17423_CDS 306 365 306 366 PF03822.14 NAF Domain 1 53 54 70.3 1.1e-19 1 CL0573
Cotton_A_39235_CDS 222 454 221 456 PF13641.6 Glyco_tranf_2_3 Domain 3 228 230 70.7 1.6e-19 1 CL0110
Cotton_A_04770_CDS 356 525 303 526 PF01612.20 DNA_pol_A_exo1 Domain 49 175 176 37.0 2.6e-09 1 CL0219
Cotton_A_04770_CDS 741 1073 718 1074 PF00476.20 DNA_pol_A Family 72 375 376 240.1 3.9e-71 1 No_clan
Cotton_A_36912_CDS 41 110 41 111 PF00076.22 RRM_1 Domain 1 69 70 72.4 2e-20 1 CL0221
Cotton_A_39288_CDS 4 85 2 86 PF00276.20 Ribosomal_L23 Family 3 84 86 68.0 6.8e-19 1 No_clan
Cotton_A_17546_CDS 180 237 173 239 PF01655.18 Ribosomal_L32e Family 14 71 108 52.7 4.6e-14 1 No_clan
Cotton_A_40148_CDS 10 57 10 57 PF00319.18 SRF-TF Domain 1 48 48 91.2 2e-26 1 No_clan
Cotton_A_40148_CDS 85 170 75 171 PF01486.17 K-box Family 7 92 93 95.8 1.3e-27 1 No_clan
Cotton_A_20510_CDS 6 140 3 140 PF04690.13 YABBY Family 19 162 162 203.5 2.9e-60 1 CL0114
Cotton_A_23439_CDS 41 103 40 127 PF08240.12 ADH_N Domain 2 63 109 41.7 8.7e-11 1 CL0296
Cotton_A_23439_CDS 206 317 206 317 PF13602.6 ADH_zinc_N_2 Domain 1 133 133 73.2 4e-20 1 CL0063
Cotton_A_17709_CDS 304 412 303 413 PF00664.23 ABC_membrane Family 2 112 274 38.9 7.8e-10 1 CL0241
Cotton_A_04412_CDS 15 370 13 370 PF03514.14 GRAS Family 3 374 374 166.6 7.8e-49 1 CL0063
Cotton_A_04412_CDS 812 935 787 938 PF02902.19 Peptidase_C48 Domain 80 210 216 58.3 9.3e-16 1 CL0125
Cotton_A_07688_CDS 18 90 17 98 PF00300.22 His_Phos_1 Domain 2 67 194 26.9 3.4e-06 1 CL0071
Cotton_A_09630_CDS 74 247 74 248 PF03152.14 UFD1 Family 1 172 173 194.5 9.5e-58 1 CL0402
Cotton_A_28098_CDS 24 441 22 441 PF03547.18 Mem_trans Family 3 387 387 304.4 7.6e-91 1 CL0064
Cotton_A_19498_CDS 10 57 10 57 PF00319.18 SRF-TF Domain 1 48 48 89.6 6.2e-26 1 No_clan
Cotton_A_31278_CDS 34 154 7 158 PF00082.22 Peptidase_S8 Domain 174 284 298 62.4 4.2e-17 1 No_clan
Cotton_A_41064_CDS 233 611 233 612 PF13086.6 AAA_11 Domain 1 260 261 98.8 4.3e-28 1 CL0023
Cotton_A_41064_CDS 620 815 619 816 PF13087.6 AAA_12 Domain 2 198 199 191.8 9.8e-57 1 CL0023
Cotton_A_07160_CDS 136 186 135 187 PF00847.20 AP2 Domain 2 53 54 50.0 2.6e-13 1 CL0081
Cotton_A_39355_CDS 125 190 122 191 PF03460.17 NIR_SIR_ferr Repeat 3 68 69 62.5 2.5e-17 1 No_clan
Cotton_A_39355_CDS 200 358 199 359 PF01077.22 NIR_SIR Family 2 158 159 126.5 6.4e-37 1 No_clan
Cotton_A_39355_CDS 382 442 382 447 PF03460.17 NIR_SIR_ferr Repeat 1 62 69 67.4 7.1e-19 1 No_clan
Cotton_A_39355_CDS 464 572 460 584 PF01077.22 NIR_SIR Family 9 118 159 35.5 6.3e-09 1 No_clan
Cotton_A_13898_CDS 476 626 475 638 PF00069.25 Pkinase Domain 2 149 264 125.4 2.5e-36 1 CL0016
Cotton_A_13898_CDS 703 809 686 809 PF00069.25 Pkinase Domain 153 264 264 72.5 3.5e-20 1 CL0016
Cotton_A_02602_CDS 27 306 27 308 PF12697.7 Abhydrolase_6 Domain 1 218 220 73.1 4.8e-20 1 CL0028
Cotton_A_05190_CDS 43 171 40 171 PF05479.11 PsaN Family 4 132 132 228.9 1.6e-68 1 No_clan
Cotton_A_04547_CDS 39 176 39 177 PF01743.20 PolyA_pol Domain 1 125 126 105.7 2.1e-30 1 CL0260
Cotton_A_19356_CDS 5 32 5 34 PF00641.18 zf-RanBP Domain 1 28 30 30.5 1.6e-07 1 CL0167
Cotton_A_19356_CDS 48 76 48 77 PF00641.18 zf-RanBP Domain 1 29 30 30.7 1.4e-07 1 CL0167
Cotton_A_19356_CDS 278 305 278 306 PF00641.18 zf-RanBP Domain 1 28 30 30.5 1.6e-07 1 CL0167
Cotton_A_07936_CDS 49 221 38 223 PF00722.21 Glyco_hydro_16 Domain 12 175 177 168.7 8.3e-50 1 CL0004
Cotton_A_07936_CDS 255 301 253 301 PF06955.12 XET_C Family 3 47 47 41.2 1.1e-10 1 CL0004
Cotton_A_24319_CDS 22 187 20 203 PF00069.25 Pkinase Domain 3 153 264 116.9 9.5e-34 1 CL0016
Cotton_A_24319_CDS 237 334 222 334 PF00069.25 Pkinase Domain 153 264 264 79.2 3.1e-22 1 CL0016
Cotton_A_07716_CDS 15 131 1 138 PF00743.19 FMO-like Family 79 209 532 45.9 2.7e-12 1 CL0063
Cotton_A_07078_CDS 133 316 132 317 PF01758.16 SBF Family 2 194 195 145.1 2.1e-42 1 CL0064
Cotton_A_02630_CDS 3 121 3 123 PF16004.5 EFTUD2 Family 1 120 122 118.6 2.4e-34 1 No_clan
Cotton_A_02630_CDS 141 345 140 457 PF00009.27 GTP_EFTU Domain 3 183 194 170.7 2.6e-50 1 CL0023
Cotton_A_02630_CDS 509 583 508 583 PF03144.25 GTP_EFTU_D2 Domain 4 74 74 36.6 4.4e-09 1 CL0575
Cotton_A_02630_CDS 726 840 720 841 PF03764.18 EFG_IV Domain 11 120 121 76.8 1.1e-21 1 CL0329
Cotton_A_02630_CDS 843 931 843 932 PF00679.24 EFG_C Domain 1 88 89 79.3 1.7e-22 1 CL0437
Cotton_A_08903_CDS 17 76 17 76 PF00137.21 ATP-synt_C Family 1 60 60 52.1 6.2e-14 1 No_clan
Cotton_A_08903_CDS 97 155 96 155 PF00137.21 ATP-synt_C Family 2 60 60 72.2 3.2e-20 1 No_clan
Cotton_A_30137_CDS 71 125 71 129 PF07939.11 DUF1685 Family 1 56 60 92.5 1e-26 1 No_clan
Cotton_A_24291_CDS 36 178 34 178 PF03208.19 PRA1 Family 3 143 143 150.6 2.1e-44 1 No_clan
Cotton_A_04372_CDS 6 147 3 148 PF02383.18 Syja_N Family 199 319 320 53.2 2.7e-14 1 CL0031
Cotton_A_04372_CDS 266 296 266 296 PF00397.26 WW Domain 1 31 31 46.6 2.7e-12 1 CL0680
Cotton_A_28643_CDS 40 65 40 66 PF13912.6 zf-C2H2_6 Domain 1 26 27 30.8 2.1e-07 1 CL0361
Cotton_A_19559_CDS 225 273 222 273 PF05093.13 CIAPIN1 Family 55 100 100 57.9 1.2e-15 1 No_clan
Cotton_A_15959_CDS 165 606 165 606 PF12899.7 Glyco_hydro_100 Domain 1 435 435 697.6 5.5e-210 1 CL0059
Cotton_A_12626_CDS 18 91 17 92 PF12701.7 LSM14 Domain 2 74 75 108.8 1.1e-31 1 CL0527
Cotton_A_12626_CDS 458 548 457 550 PF09532.10 FDF Domain 2 101 104 60.6 2.2e-16 1 No_clan
Cotton_A_21547_CDS 75 129 75 132 PF00571.28 CBS Domain 1 53 57 47.2 2.3e-12 1 No_clan
Cotton_A_21547_CDS 169 222 169 225 PF00571.28 CBS Domain 1 54 57 59.2 4.1e-16 1 No_clan
Cotton_A_06781_CDS 19 89 18 90 PF14709.7 DND1_DSRM Domain 3 79 80 40.4 2.5e-10 1 CL0196
Cotton_A_15336_CDS 214 266 213 268 PF17820.1 PDZ_6 Domain 2 54 56 43.2 2.5e-11 1 CL0466
Cotton_A_15336_CDS 309 471 309 472 PF03572.18 Peptidase_S41 Family 1 165 166 160.3 3e-47 1 CL0127
Cotton_A_28570_CDS 23 76 3 78 PF14111.6 DUF4283 Domain 88 141 145 27.8 1.5e-06 1 No_clan
Cotton_A_17791_CDS 38 86 37 86 PF10509.9 GalKase_gal_bdg Domain 2 49 49 78.6 1.8e-22 1 CL0329
Cotton_A_17791_CDS 154 219 154 221 PF00288.26 GHMP_kinases_N Family 1 64 66 50.2 2.3e-13 1 CL0329
Cotton_A_17791_CDS 393 467 380 468 PF08544.13 GHMP_kinases_C Family 8 84 85 53.3 2.7e-14 1 CL0677
Cotton_A_09086_CDS 29 108 29 109 PF13774.6 Longin Domain 1 83 84 86.7 8e-25 1 No_clan
Cotton_A_09086_CDS 124 211 123 211 PF00957.21 Synaptobrevin Family 2 89 89 107.0 3e-31 1 CL0445
Cotton_A_33039_CDS 34 110 25 116 PF02362.21 B3 Family 13 95 101 60.3 1.3e-16 1 CL0405
Cotton_A_33039_CDS 272 353 272 365 PF02362.21 B3 Family 1 86 101 48.4 6.4e-13 1 CL0405
Cotton_A_07909_CDS 13 110 11 125 PF01412.18 ArfGap Domain 3 104 117 117.4 3.3e-34 1 No_clan
Cotton_A_23477_CDS 5 66 4 66 PF00690.26 Cation_ATPase_N Domain 2 69 69 47.2 1.3e-12 1 No_clan
Cotton_A_23477_CDS 122 298 120 299 PF00122.20 E1-E2_ATPase Family 29 180 181 136.2 8.7e-40 1 No_clan
Cotton_A_23477_CDS 389 498 389 498 PF13246.6 Cation_ATPase Family 1 91 91 78.0 4.2e-22 1 CL0137
Cotton_A_23477_CDS 568 690 470 690 PF00702.26 Hydrolase Domain 107 210 210 60.5 2.6e-16 1 CL0137
Cotton_A_23477_CDS 760 959 759 959 PF00689.21 Cation_ATPase_C Family 2 182 182 158.6 1.3e-46 1 No_clan
Cotton_A_26623_CDS 78 161 78 177 PF01453.24 B_lectin Domain 1 90 105 64.6 1e-17 1 No_clan
Cotton_A_26623_CDS 509 782 506 784 PF00069.25 Pkinase Domain 5 259 264 181.5 1.9e-53 1 CL0016
Cotton_A_32623_CDS 67 123 67 123 PF00831.23 Ribosomal_L29 Family 1 57 57 53.4 1.8e-14 1 CL0346
Cotton_A_04079_CDS 41 103 40 105 PF00191.20 Annexin Family 2 64 66 73.4 1.2e-20 1 No_clan
Cotton_A_04079_CDS 200 261 199 263 PF00191.20 Annexin Family 3 64 66 54.7 7.6e-15 1 No_clan
Cotton_A_04079_CDS 274 338 273 338 PF00191.20 Annexin Family 2 66 66 56.5 2.1e-15 1 No_clan
Cotton_A_00523_CDS 11 358 11 358 PF00274.19 Glycolytic Domain 1 349 349 562.0 3.6e-169 1 CL0035
Cotton_A_03422_CDS 54 377 54 386 PF00295.17 Glyco_hydro_28 Domain 1 319 325 295.7 3.8e-88 1 CL0268
Cotton_A_32245_CDS 9 104 5 150 PF02301.18 HORMA Domain 7 109 212 36.0 5.4e-09 1 CL0651
Cotton_A_01081_CDS 48 493 48 513 PF00067.22 p450 Domain 1 440 463 337.2 1.5e-100 1 No_clan
Cotton_A_37541_CDS 2 56 1 57 PF00403.26 HMA Domain 3 61 62 61.7 6.5e-17 1 No_clan
Cotton_A_00767_CDS 8 60 4 65 PF00173.28 Cyt-b5 Domain 7 58 74 55.6 4.3e-15 1 No_clan
Cotton_A_10444_CDS 233 318 233 318 PF08142.12 AARP2CN Domain 1 86 86 105.1 1.5e-30 1 No_clan
Cotton_A_10444_CDS 735 819 713 819 PF04950.12 RIBIOP_C Family 38 109 292 25.9 6.2e-06 1 CL0575
Cotton_A_08525_CDS 6 125 5 126 PF02291.15 TFIID-31kDa Domain 2 121 122 162.7 3.6e-48 1 CL0012
Cotton_A_16850_CDS 108 321 108 322 PF07859.13 Abhydrolase_3 Domain 1 210 211 196.3 5.6e-58 1 CL0028
Cotton_A_08636_CDS 75 298 75 299 PF07859.13 Abhydrolase_3 Domain 1 210 211 169.6 7.9e-50 1 CL0028
Cotton_A_08834_CDS 45 120 41 120 PF02298.17 Cu_bind_like Domain 8 84 84 91.8 2.1e-26 1 CL0026
Cotton_A_01694_CDS 39 147 35 152 PF00790.19 VHS Domain 8 119 141 59.7 2.7e-16 1 CL0009
Cotton_A_01726_CDS 3 177 1 178 PF00800.18 PDT Family 3 182 183 184.3 1.8e-54 1 CL0177
Cotton_A_35089_CDS 3 76 3 77 PF00240.23 ubiquitin Domain 1 71 72 58.8 3.2e-16 1 CL0072
Cotton_A_35089_CDS 149 187 148 187 PF00627.31 UBA Domain 2 37 37 55.9 2.7e-15 1 CL0214
Cotton_A_35089_CDS 248 303 248 304 PF09280.11 XPC-binding Domain 1 56 57 76.0 1.4e-21 1 No_clan
Cotton_A_35089_CDS 329 364 328 364 PF00627.31 UBA Domain 2 37 37 44.8 8.2e-12 1 CL0214
Cotton_A_17579_CDS 575 598 575 601 PF08159.12 NUC153 Domain 1 24 29 40.2 2.1e-10 1 No_clan
Cotton_A_31373_CDS 18 156 16 160 PF00892.20 EamA Family 3 133 137 38.2 1.4e-09 1 CL0184
Cotton_A_31373_CDS 188 326 187 327 PF00892.20 EamA Family 2 136 137 53.4 3e-14 1 CL0184
Cotton_A_25211_CDS 493 527 486 527 PF00400.32 WD40 Repeat 7 38 38 21.3 0.00035 1 CL0186
Cotton_A_25211_CDS 953 986 949 986 PF00400.32 WD40 Repeat 6 38 38 18.8 0.0022 1 CL0186
Cotton_A_32782_CDS 351 460 336 461 PF13692.6 Glyco_trans_1_4 Domain 32 132 134 36.5 5.6e-09 1 CL0113
Cotton_A_09284_CDS 56 90 55 91 PF03638.15 TCR Domain 2 37 38 43.2 3.6e-11 1 No_clan
Cotton_A_09284_CDS 142 177 141 178 PF03638.15 TCR Domain 2 37 38 41.8 9.5e-11 1 No_clan
Cotton_A_09284_CDS 423 474 423 474 PF00249.31 Myb_DNA-binding Domain 1 46 46 38.0 1.4e-09 1 CL0123
Cotton_A_09284_CDS 508 552 506 553 PF14379.6 Myb_CC_LHEQLE Family 3 47 48 79.9 7.8e-23 1 No_clan
Cotton_A_16151_CDS 66 351 66 352 PF02383.18 Syja_N Family 1 319 320 286.8 2.2e-85 1 CL0031
Cotton_A_10376_CDS 287 535 287 535 PF07714.17 Pkinase_Tyr Domain 1 259 259 251.0 1.1e-74 1 CL0016
Cotton_A_35358_CDS 12 34 11 36 PF05676.13 NDUF_B7 Family 2 24 63 28.9 6.7e-07 1 CL0351
Cotton_A_28418_CDS 51 201 50 202 PF12638.7 Staygreen Domain 2 147 148 191.2 8.1e-57 1 No_clan
Cotton_A_17523_CDS 163 211 163 212 PF13041.6 PPR_2 Repeat 1 49 50 39.2 5.7e-10 1 CL0020
Cotton_A_17523_CDS 238 265 236 266 PF01535.20 PPR Family 3 30 31 14.6 0.028 1 CL0020
Cotton_A_17523_CDS 267 297 267 297 PF01535.20 PPR Family 1 31 31 28.3 1.3e-06 1 CL0020
Cotton_A_17523_CDS 365 414 365 414 PF13041.6 PPR_2 Repeat 1 50 50 44.6 1.2e-11 1 CL0020
Cotton_A_17523_CDS 466 513 466 514 PF13041.6 PPR_2 Repeat 1 49 50 31.4 1.7e-07 1 CL0020
Cotton_A_17523_CDS 566 613 566 615 PF13041.6 PPR_2 Repeat 1 48 50 38.7 8.6e-10 1 CL0020
Cotton_A_17523_CDS 740 865 740 865 PF14432.6 DYW_deaminase Family 1 127 127 131.5 1.6e-38 1 CL0109
Cotton_A_20331_CDS 40 118 40 119 PF05922.16 Inhibitor_I9 Domain 1 81 82 56.9 2.5e-15 1 CL0570
Cotton_A_20331_CDS 144 616 144 624 PF00082.22 Peptidase_S8 Domain 1 289 298 142.7 1.4e-41 1 No_clan
Cotton_A_20331_CDS 691 786 691 786 PF17766.1 fn3_6 Domain 1 99 99 95.0 2.3e-27 1 CL0159
Cotton_A_04389_CDS 160 180 160 180 PF00612.27 IQ Motif 1 21 21 27.3 1.7e-06 1 CL0220
Cotton_A_04389_CDS 422 490 343 515 PF13178.6 DUF4005 Family 21 76 93 26.1 1e-05 1 No_clan
Cotton_A_05371_CDS 76 194 73 244 PF01925.19 TauE Family 3 112 236 44.2 1.8e-11 1 CL0292
Cotton_A_05371_CDS 324 430 243 439 PF01925.19 TauE Family 125 233 236 42.5 5.5e-11 1 CL0292
Cotton_A_17147_CDS 14 104 12 117 PF00168.30 C2 Domain 3 91 103 38.8 8.8e-10 1 CL0154
Cotton_A_13387_CDS 151 389 150 391 PF05637.12 Glyco_transf_34 Family 2 237 239 232.8 4.4e-69 1 CL0110
Cotton_A_36850_CDS 23 70 23 70 PF00249.31 Myb_DNA-binding Domain 1 46 46 59.3 3e-16 1 CL0123
Cotton_A_36850_CDS 76 119 76 121 PF00249.31 Myb_DNA-binding Domain 1 44 46 51.4 9.1e-14 1 CL0123
Cotton_A_05619_CDS 2 45 1 46 PF00847.20 AP2 Domain 8 53 54 37.0 2.9e-09 1 CL0081
Cotton_A_18265_CDS 54 509 54 509 PF00759.19 Glyco_hydro_9 Domain 1 411 411 445.4 2.8e-133 1 CL0059
Cotton_A_36015_CDS 73 182 73 183 PF14365.6 Neprosin_AP Family 1 117 118 122.2 1.5e-35 1 No_clan
Cotton_A_36015_CDS 196 421 196 421 PF03080.15 Neprosin Family 1 222 222 274.4 5.7e-82 1 No_clan
Cotton_A_31573_CDS 35 329 35 334 PF00995.23 Sec1 Family 1 299 575 223.1 1.1e-65 1 No_clan
Cotton_A_20874_CDS 30 70 29 70 PF12937.7 F-box-like Domain 7 48 48 40.4 2e-10 1 CL0271
Cotton_A_38630_CDS 51 135 51 148 PF00295.17 Glyco_hydro_28 Domain 1 85 325 48.1 8.4e-13 1 CL0268
Cotton_A_24659_CDS 25 312 23 313 PF08392.12 FAE1_CUT1_RppA Family 3 289 290 380.6 4.7e-114 1 CL0046
Cotton_A_24659_CDS 336 420 329 420 PF08541.10 ACP_syn_III_C Domain 9 90 90 51.5 8.4e-14 1 CL0046
Cotton_A_30020_CDS 7 46 7 48 PF02099.17 Josephin Family 1 40 163 38.4 1.2e-09 1 CL0125
Cotton_A_30020_CDS 48 92 46 93 PF02099.17 Josephin Family 73 119 163 24.4 2.6e-05 1 CL0125
Cotton_A_04006_CDS 29 131 28 131 PF00085.20 Thioredoxin Domain 2 103 103 86.1 1.3e-24 1 CL0172
Cotton_A_04006_CDS 180 346 167 348 PF13848.6 Thioredoxin_6 Domain 24 182 184 50.2 2.8e-13 1 CL0172
Cotton_A_12835_CDS 10 106 2 109 PF04699.14 P16-Arc Domain 45 145 148 63.4 3.3e-17 1 No_clan
Cotton_A_01164_CDS 35 120 35 120 PF02298.17 Cu_bind_like Domain 1 84 84 91.0 3.6e-26 1 CL0026
Cotton_A_35330_CDS 39 224 35 224 PF02115.17 Rho_GDI Domain 6 195 195 272.3 2.1e-81 1 CL0159
Cotton_A_37878_CDS 298 335 297 335 PF00400.32 WD40 Repeat 2 38 38 19.6 0.0012 1 CL0186
Cotton_A_03140_CDS 68 213 68 213 PF01565.23 FAD_binding_4 Domain 1 139 139 62.7 2.8e-17 1 CL0077
Cotton_A_03140_CDS 247 431 241 431 PF09265.10 Cytokin-bind Domain 94 281 281 281.2 8.8e-84 1 CL0277
Cotton_A_23340_CDS 71 133 68 141 PF00201.18 UDPGT Family 347 409 499 47.9 8.7e-13 1 CL0113
Cotton_A_36137_CDS 145 294 145 295 PF00929.24 RNase_T Family 1 164 165 34.8 2.2e-08 1 CL0219
Cotton_A_25155_CDS 5 60 3 65 PF02798.20 GST_N Domain 3 60 76 37.1 3.1e-09 1 CL0172
Cotton_A_09649_CDS 66 122 66 146 PF02365.15 NAM Family 1 51 126 27.7 4.1e-06 1 No_clan
Cotton_A_09649_CDS 151 214 151 262 PF02365.15 NAM Family 1 63 126 26.3 1.2e-05 1 No_clan
Cotton_A_09649_CDS 184 296 161 298 PF01090.19 Ribosomal_S19e Family 23 135 137 154.1 1.7e-45 1 CL0123
Cotton_A_07762_CDS 159 213 157 215 PF00226.31 DnaJ Domain 6 56 63 45.5 6e-12 1 CL0392
Cotton_A_17160_CDS 5 125 4 125 PF03311.14 Cornichon Family 2 122 122 141.1 2e-41 1 No_clan
Cotton_A_29018_CDS 674 857 669 860 PF12043.8 DUF3527 Family 169 347 351 153.9 7.9e-45 1 CL0395
Cotton_A_14291_CDS 88 161 87 161 PF01169.19 UPF0016 Family 2 75 75 69.1 3e-19 1 CL0292
Cotton_A_14291_CDS 211 283 210 284 PF01169.19 UPF0016 Family 2 74 75 74.0 9.1e-21 1 CL0292
Cotton_A_25488_CDS 127 306 127 306 PF00174.19 Oxidored_molyb Domain 1 172 172 193.0 2.9e-57 1 CL0072
Cotton_A_25488_CDS 334 464 333 466 PF03404.16 Mo-co_dimer Domain 2 136 138 178.7 5.3e-53 1 CL0159
Cotton_A_25488_CDS 520 589 519 590 PF00173.28 Cyt-b5 Domain 2 73 74 81.6 3.3e-23 1 No_clan
Cotton_A_25488_CDS 638 744 637 744 PF00970.24 FAD_binding_6 Domain 2 99 99 120.3 3.6e-35 1 CL0076
Cotton_A_25488_CDS 764 870 764 872 PF00175.21 NAD_binding_1 Domain 1 107 109 115.6 1.6e-33 1 CL0091
Cotton_A_31026_CDS 182 209 182 209 PF05678.14 VQ Motif 1 28 28 43.7 1.3e-11 1 No_clan
Cotton_A_22996_CDS 129 225 120 228 PF00651.31 BTB Domain 11 107 111 53.1 3.2e-14 1 CL0033
Cotton_A_22996_CDS 252 344 249 346 PF07707.15 BACK Domain 14 101 103 41.5 1.1e-10 1 CL0033
Cotton_A_06878_CDS 166 219 166 219 PF13867.6 SAP30_Sin3_bdg Family 1 54 54 78.7 3e-22 1 No_clan
Cotton_A_00588_CDS 218 277 196 278 PF10044.9 LIN52 Family 36 94 95 22.0 0.00019 1 No_clan
Cotton_A_20001_CDS 6 122 6 122 PF16100.5 RMI2 Family 1 129 129 111.3 2.7e-32 1 CL0021
Cotton_A_11271_CDS 9 164 1 164 PF14009.6 DUF4228 Family 4 179 179 111.1 7.6e-32 1 No_clan
Cotton_A_10188_CDS 15 63 14 65 PF05365.12 UCR_UQCRX_QCR9 Family 2 50 53 75.4 2.3e-21 1 No_clan
Cotton_A_08595_CDS 67 96 66 96 PF17123.5 zf-RING_11 Domain 2 29 29 39.2 4.2e-10 1 CL0229
Cotton_A_08595_CDS 221 419 221 420 PF00092.28 VWA Domain 1 174 175 84.6 9.2e-24 1 CL0128
Cotton_A_08595_CDS 594 671 594 672 PF14624.6 Vwaint Domain 1 69 70 69.5 2e-19 1 No_clan
Cotton_A_14927_CDS 1 154 1 154 PF00407.19 Bet_v_1 Domain 1 151 151 76.5 2e-21 1 CL0209
Cotton_A_24382_CDS 40 630 28 641 PF03999.12 MAP65_ASE1 Family 16 586 598 404.6 8.4e-121 1 No_clan
Cotton_A_32590_CDS 27 114 21 122 PF00651.31 BTB Domain 9 98 111 27.7 2.4e-06 1 CL0033
Cotton_A_32590_CDS 211 460 211 460 PF03000.14 NPH3 Family 1 258 258 275.8 3.8e-82 1 No_clan
Cotton_A_08720_CDS 478 630 459 636 PF07714.17 Pkinase_Tyr Domain 28 180 259 127.7 4.5e-37 1 CL0016
Cotton_A_08720_CDS 677 737 671 742 PF07714.17 Pkinase_Tyr Domain 183 243 259 37.5 1.5e-09 1 CL0016
Cotton_A_21255_CDS 82 194 81 194 PF17773.1 UPF0176_N Domain 2 92 92 71.6 5.2e-20 1 CL0622
Cotton_A_21255_CDS 216 337 213 338 PF00581.20 Rhodanese Domain 4 106 107 30.1 5.4e-07 1 CL0031
Cotton_A_02155_CDS 3 70 3 72 PF00240.23 ubiquitin Domain 1 68 72 52.9 2.4e-14 1 CL0072
Cotton_A_02155_CDS 186 308 185 308 PF09668.10 Asp_protease Family 2 124 124 183.6 1e-54 1 CL0129
Cotton_A_02155_CDS 383 414 381 417 PF00627.31 UBA Domain 3 34 37 34.2 1.7e-08 1 CL0214
Cotton_A_27601_CDS 12 89 7 93 PF14368.6 LTP_2 Family 5 90 97 33.3 3.9e-08 1 CL0482
Cotton_A_08253_CDS 65 320 65 322 PF01501.20 Glyco_transf_8 Family 1 254 256 190.5 3.8e-56 1 CL0110
Cotton_A_15876_CDS 24 96 24 96 PF04376.13 ATE_N Family 1 81 81 99.0 1.5e-28 1 CL0257
Cotton_A_15876_CDS 336 478 336 478 PF04377.15 ATE_C Family 1 134 134 171.8 1e-50 1 CL0257
Cotton_A_15477_CDS 12 90 12 90 PF05008.15 V-SNARE Family 1 79 79 81.9 3.2e-23 1 CL0147
Cotton_A_15477_CDS 128 193 128 193 PF12352.8 V-SNARE_C Domain 1 66 66 82.9 1.4e-23 1 CL0147
Cotton_A_23853_CDS 56 141 55 150 PF05701.11 WEMBL Family 2 88 562 54.8 6.7e-15 1 No_clan
Cotton_A_23853_CDS 293 429 267 429 PF05701.11 WEMBL Family 416 562 562 35.3 5.4e-09 1 No_clan
Cotton_A_06199_CDS 111 223 101 227 PF13537.6 GATase_7 Domain 14 116 123 29.1 7.4e-07 1 CL0052
Cotton_A_06199_CDS 349 400 343 408 PF00733.21 Asn_synthase Domain 16 65 355 23.6 3.5e-05 1 CL0039
Cotton_A_06199_CDS 507 586 504 624 PF00733.21 Asn_synthase Domain 201 275 355 31.1 1.9e-07 1 CL0039
Cotton_A_21997_CDS 3 67 3 68 PF01423.22 LSM Domain 1 66 67 67.7 5.1e-19 1 CL0527
Cotton_A_08593_CDS 373 522 371 526 PF11721.8 Malectin Domain 3 128 165 97.3 1e-27 1 CL0202
Cotton_A_08593_CDS 627 892 624 892 PF07714.17 Pkinase_Tyr Domain 4 259 259 153.0 8.8e-45 1 CL0016
Cotton_A_39094_CDS 23 95 23 95 PF02874.23 ATP-synt_ab_N Domain 1 69 69 86.9 9.3e-25 1 CL0275
Cotton_A_35589_CDS 203 336 198 338 PF10409.9 PTEN_C2 Family 6 133 135 88.3 3.6e-25 1 CL0154
Cotton_A_35589_CDS 1062 1211 1057 1218 PF02181.23 FH2 Family 8 153 372 120.6 8.1e-35 1 No_clan
Cotton_A_24055_CDS 25 95 2 97 PF02519.14 Auxin_inducible Family 18 88 90 91.6 2.6e-26 1 No_clan
Cotton_A_35841_CDS 21 68 21 68 PF00249.31 Myb_DNA-binding Domain 1 46 46 63.8 1.2e-17 1 CL0123
Cotton_A_35841_CDS 74 118 74 119 PF00249.31 Myb_DNA-binding Domain 1 45 46 49.4 3.8e-13 1 CL0123
Cotton_A_08432_CDS 153 711 152 712 PF04114.14 Gaa1 Family 2 497 498 384.5 9.1e-115 1 No_clan
Cotton_A_10149_CDS 36 134 36 134 PF01190.17 Pollen_Ole_e_I Family 1 99 99 95.3 2.3e-27 1 CL0287
Cotton_A_23716_CDS 18 126 10 128 PF02882.19 THF_DHG_CYH_C Domain 56 158 160 130.6 3e-38 1 CL0063
Cotton_A_12141_CDS 91 231 89 232 PF02729.21 OTCace_N Domain 3 147 148 157.9 1.7e-46 1 No_clan
Cotton_A_12141_CDS 238 389 238 390 PF00185.24 OTCace Domain 1 156 157 110.4 8.7e-32 1 CL0399
Cotton_A_27837_CDS 6 164 5 165 PF06172.11 Cupin_5 Domain 2 140 141 153.5 4e-45 1 CL0029
Cotton_A_11952_CDS 40 828 39 828 PF01496.19 V_ATPase_I Family 2 813 813 934.3 5.3e-281 1 No_clan
Cotton_A_04691_CDS 290 523 289 523 PF01458.17 UPF0051 Family 2 218 218 217.4 1.8e-64 1 No_clan
Cotton_A_30016_CDS 37 148 37 148 PF10153.9 Efg1 Family 1 114 114 107.1 6.4e-31 1 No_clan
Cotton_A_21071_CDS 57 146 54 147 PF04032.16 Rpr2 Family 4 89 90 39.8 4.2e-10 1 No_clan
Cotton_A_10881_CDS 40 105 40 105 PF00226.31 DnaJ Domain 1 63 63 66.2 2.1e-18 1 CL0392
Cotton_A_12398_CDS 15 175 15 176 PF00071.22 Ras Domain 1 161 162 205.1 4.8e-61 1 CL0023
Cotton_A_00458_CDS 86 117 85 118 PF13181.6 TPR_8 Repeat 2 33 34 20.7 0.00032 1 CL0020
Cotton_A_00458_CDS 201 233 200 233 PF07719.17 TPR_2 Repeat 2 34 34 23.9 2.8e-05 1 CL0020
Cotton_A_00458_CDS 372 435 372 435 PF00226.31 DnaJ Domain 1 63 63 91.7 2.3e-26 1 CL0392
Cotton_A_05750_CDS 235 333 235 334 PF03126.18 Plus-3 Domain 1 108 109 47.2 2.7e-12 1 No_clan
Cotton_A_11031_CDS 8 71 7 71 PF00808.23 CBFD_NFYB_HMF Domain 2 65 65 70.2 1.4e-19 1 CL0012
Cotton_A_28719_CDS 2 93 1 109 PF08597.10 eIF3_subunit Family 118 213 242 56.0 5.3e-15 1 No_clan
Cotton_A_23856_CDS 12 128 12 137 PF01448.24 ELM2 Family 1 45 53 25.0 2.4e-05 1 No_clan
Cotton_A_08813_CDS 54 398 53 400 PF03016.15 Exostosin Family 2 298 300 247.4 1.8e-73 1 No_clan
Cotton_A_22110_CDS 70 150 68 151 PF14389.6 Lzipper-MIP1 Family 3 83 84 89.5 1.3e-25 1 No_clan
Cotton_A_22110_CDS 400 534 399 534 PF04784.14 DUF547 Family 2 123 123 140.4 2.8e-41 1 No_clan
Cotton_A_17983_CDS 8 32 4 33 PF14392.6 zf-CCHC_4 Domain 24 48 49 28.4 9.6e-07 1 CL0511
Cotton_A_07393_CDS 154 237 154 241 PF03088.16 Str_synth Family 1 84 89 78.7 2.8e-22 1 CL0186
Cotton_A_07222_CDS 76 123 76 124 PF13041.6 PPR_2 Repeat 1 48 50 37.1 2.7e-09 1 CL0020
Cotton_A_07222_CDS 152 173 152 179 PF01535.20 PPR Family 4 25 31 14.4 0.033 1 CL0020
Cotton_A_07222_CDS 177 225 177 226 PF13041.6 PPR_2 Repeat 1 49 50 41.0 1.7e-10 1 CL0020
Cotton_A_07222_CDS 256 282 253 282 PF01535.20 PPR Family 5 31 31 13.3 0.075 1 CL0020
Cotton_A_07222_CDS 283 310 283 312 PF01535.20 PPR Family 1 28 31 24.1 2.6e-05 1 CL0020
Cotton_A_07222_CDS 381 428 381 430 PF13041.6 PPR_2 Repeat 1 48 50 48.4 8.1e-13 1 CL0020
Cotton_A_00620_CDS 167 222 167 222 PF13857.6 Ank_5 Repeat 1 56 56 37.0 2.9e-09 1 CL0465
Cotton_A_00620_CDS 311 354 308 355 PF00385.24 Chromo Domain 4 53 54 33.5 2.9e-08 1 CL0049
Cotton_A_05426_CDS 3 52 2 61 PF03868.15 Ribosomal_L6e_N Domain 2 48 60 39.3 5.8e-10 1 No_clan
Cotton_A_08014_CDS 6 116 5 116 PF13881.6 Rad60-SLD_2 Domain 2 111 111 139.2 5.1e-41 1 CL0072
Cotton_A_12756_CDS 42 120 42 120 PF02298.17 Cu_bind_like Domain 1 84 84 88.4 2.3e-25 1 CL0026
Cotton_A_29097_CDS 5 142 4 144 PF01321.18 Creatinase_N Domain 2 127 132 61.5 1.2e-16 1 CL0356
Cotton_A_29097_CDS 147 327 147 327 PF16189.5 Creatinase_N_2 Domain 1 161 161 162.4 9.2e-48 1 CL0356
Cotton_A_29097_CDS 383 572 330 572 PF00557.24 Peptidase_M24 Domain 24 209 209 145.0 2.4e-42 1 No_clan
Cotton_A_29097_CDS 584 643 583 643 PF16188.5 Peptidase_M24_C Domain 2 63 63 82.2 2.1e-23 1 No_clan
Cotton_A_20004_CDS 536 672 511 690 PF10220.9 Smg8_Smg9 Family 381 512 881 125.2 2.9e-36 1 No_clan
Cotton_A_20004_CDS 700 746 681 778 PF10220.9 Smg8_Smg9 Family 661 708 881 24.4 8.7e-06 1 No_clan
Cotton_A_20004_CDS 1073 1176 1061 1202 PF10220.9 Smg8_Smg9 Family 773 859 881 35.5 3.6e-09 1 No_clan
Cotton_A_28549_CDS 30 56 27 56 PF06220.12 zf-U1 Domain 11 38 38 29.0 6.6e-07 1 CL0361
Cotton_A_16794_CDS 196 509 196 509 PF04765.13 DUF616 Family 1 314 314 490.9 1.5e-147 1 No_clan
Cotton_A_33751_CDS 54 443 54 445 PF03140.15 DUF247 Family 1 395 397 366.0 2.7e-109 1 No_clan
Cotton_A_32350_CDS 33 287 30 287 PF00069.25 Pkinase Domain 5 264 264 166.2 9e-49 1 CL0016
Cotton_A_21791_CDS 2 50 1 55 PF13456.6 RVT_3 Domain 42 90 124 26.8 3.5e-06 1 CL0219
Cotton_A_08313_CDS 6 98 3 99 PF00153.27 Mito_carr Family 4 96 97 61.0 7.8e-17 1 No_clan
Cotton_A_08313_CDS 104 188 102 189 PF00153.27 Mito_carr Family 3 96 97 33.8 2.4e-08 1 No_clan
Cotton_A_08313_CDS 203 298 201 301 PF00153.27 Mito_carr Family 3 91 97 59.2 2.9e-16 1 No_clan
Cotton_A_13805_CDS 1 357 1 359 PF00999.21 Na_H_Exchanger Family 31 379 381 90.3 1.1e-25 1 CL0064
Cotton_A_00694_CDS 46 62 45 62 PF00098.23 zf-CCHC Domain 2 18 18 25.7 7.9e-06 1 CL0511
Cotton_A_00694_CDS 66 80 65 81 PF00098.23 zf-CCHC Domain 3 17 18 21.7 0.00014 1 CL0511
Cotton_A_00694_CDS 85 100 83 100 PF00098.23 zf-CCHC Domain 3 18 18 24.9 1.4e-05 1 CL0511
Cotton_A_00694_CDS 103 118 102 119 PF00098.23 zf-CCHC Domain 2 17 18 24.2 2.4e-05 1 CL0511
Cotton_A_00694_CDS 129 145 128 145 PF00098.23 zf-CCHC Domain 2 18 18 18.7 0.0013 1 CL0511
Cotton_A_00694_CDS 148 164 147 164 PF00098.23 zf-CCHC Domain 2 18 18 24.9 1.5e-05 1 CL0511
Cotton_A_00694_CDS 167 183 165 183 PF14392.6 zf-CCHC_4 Domain 33 49 49 13.1 0.058 1 CL0511
Cotton_A_00694_CDS 215 229 214 230 PF00098.23 zf-CCHC Domain 2 16 18 21.1 0.00022 1 CL0511
Cotton_A_00694_CDS 235 251 234 251 PF00098.23 zf-CCHC Domain 2 18 18 24.8 1.5e-05 1 CL0511
Cotton_A_24168_CDS 18 88 18 88 PF00076.22 RRM_1 Domain 1 70 70 71.4 3.9e-20 1 CL0221
Cotton_A_26709_CDS 459 606 455 612 PF07714.17 Pkinase_Tyr Domain 9 154 259 92.8 2.1e-26 1 CL0016
Cotton_A_26709_CDS 724 791 723 795 PF04564.15 U-box Domain 2 69 73 53.9 1.5e-14 1 CL0229
Cotton_A_32120_CDS 95 595 95 595 PF03141.16 Methyltransf_29 Family 1 506 506 434.2 5.9e-130 1 CL0063
Cotton_A_38371_CDS 12 436 11 438 PF02458.15 Transferase Family 2 432 434 273.2 3.3e-81 1 CL0149
Cotton_A_38520_CDS 28 186 28 189 PF00314.17 Thaumatin Domain 1 157 214 176.1 7.5e-52 1 CL0293
Cotton_A_05748_CDS 6 176 2 177 PF00025.21 Arf Domain 2 174 175 240.8 5.6e-72 1 CL0023
Cotton_A_25458_CDS 5 76 1 78 PF02519.14 Auxin_inducible Family 23 88 90 60.1 1.7e-16 1 No_clan
Cotton_A_10515_CDS 36 264 35 266 PF00194.21 Carb_anhydrase Domain 2 251 254 137.0 8e-40 1 No_clan
Cotton_A_20557_CDS 4 200 1 201 PF13839.6 PC-Esterase Family 72 282 283 195.5 1.5e-57 1 CL0264
Cotton_A_13042_CDS 133 171 133 171 PF00097.25 zf-C3HC4 Domain 1 41 41 32.5 5.6e-08 1 CL0229
Cotton_A_13042_CDS 264 433 261 434 PF02182.17 SAD_SRA Domain 6 156 157 174.2 1.5e-51 1 CL0178
Cotton_A_13042_CDS 526 579 526 580 PF13445.6 zf-RING_UBOX Domain 1 38 39 29.6 5e-07 1 CL0229
Cotton_A_36947_CDS 43 104 41 139 PF00307.31 CH Domain 4 60 109 28.8 1e-06 1 CL0188
Cotton_A_36947_CDS 247 560 247 561 PF00225.23 Kinesin Domain 1 332 333 348.4 3.3e-104 1 CL0023
Cotton_A_15821_CDS 88 118 85 118 PF06200.14 tify Domain 4 34 34 46.1 2.2e-12 1 No_clan
Cotton_A_15821_CDS 151 193 151 194 PF06203.14 CCT Motif 1 43 44 58.0 7.2e-16 1 CL0281
Cotton_A_15821_CDS 224 260 224 261 PF00320.27 GATA Domain 1 35 36 50.1 1.5e-13 1 CL0167
Cotton_A_34080_CDS 83 146 80 147 PF04195.12 Transposase_28 Family 5 69 70 27.2 3.3e-06 1 No_clan
Cotton_A_38565_CDS 73 190 73 190 PF00917.26 MATH Domain 1 113 113 89.1 2.1e-25 1 CL0389
Cotton_A_19849_CDS 1 96 1 96 PF01199.18 Ribosomal_L34e Family 1 94 94 126.0 5.4e-37 1 No_clan
Cotton_A_15587_CDS 116 177 116 177 PF16177.5 ACAS_N Family 1 55 55 64.8 5e-18 1 CL0378
Cotton_A_15587_CDS 187 605 179 606 PF00501.28 AMP-binding Family 9 422 423 279.6 3.4e-83 1 CL0378
Cotton_A_15587_CDS 614 692 614 692 PF13193.6 AMP-binding_C Domain 1 76 76 84.0 1.1e-23 1 CL0531
Cotton_A_38233_CDS 3 213 3 214 PF00091.25 Tubulin Domain 1 196 197 227.7 1.5e-67 1 CL0566
Cotton_A_38233_CDS 263 392 263 393 PF03953.17 Tubulin_C Domain 1 125 126 171.7 7e-51 1 CL0442
Cotton_A_00128_CDS 301 617 301 618 PF01501.20 Glyco_transf_8 Family 1 255 256 301.4 5.4e-90 1 CL0110
Cotton_A_37511_CDS 54 285 53 285 PF03087.14 DUF241 Family 2 234 234 254.9 8e-76 1 CL0133
Cotton_A_04043_CDS 20 142 20 149 PF00561.20 Abhydrolase_1 Domain 1 126 257 50.3 2.4e-13 1 CL0028
Cotton_A_15866_CDS 8 56 7 66 PF03478.18 DUF295 Domain 2 54 55 55.0 4.4e-15 1 No_clan
Cotton_A_20317_CDS 71 93 71 98 PF00004.29 AAA Domain 1 23 132 26.5 7e-06 1 CL0023
Cotton_A_10246_CDS 43 218 43 219 PF00350.23 Dynamin_N Domain 1 167 168 98.6 3.9e-28 1 CL0023
Cotton_A_10246_CDS 271 509 267 518 PF01031.20 Dynamin_M Family 31 273 285 79.5 2.3e-22 1 No_clan
Cotton_A_10246_CDS 601 721 598 722 PF00169.29 PH Domain 5 104 105 43.1 4.9e-11 1 CL0266
Cotton_A_10246_CDS 758 839 755 846 PF02212.18 GED Family 4 83 92 40.9 1.7e-10 1 No_clan
Cotton_A_13624_CDS 112 131 108 132 PF00642.24 zf-CCCH Family 6 26 27 22.6 6.9e-05 1 CL0537
Cotton_A_35690_CDS 32 127 31 128 PF01657.17 Stress-antifung Family 2 94 95 65.7 4.6e-18 1 No_clan
Cotton_A_35690_CDS 147 239 143 240 PF01657.17 Stress-antifung Family 7 93 95 47.8 1.7e-12 1 No_clan
Cotton_A_12870_CDS 118 136 117 137 PF00612.27 IQ Motif 2 20 21 22.8 4.6e-05 1 CL0220
Cotton_A_12870_CDS 143 157 140 158 PF00612.27 IQ Motif 5 19 21 16.7 0.0043 1 CL0220
Cotton_A_12870_CDS 266 323 249 356 PF13178.6 DUF4005 Family 17 54 93 45.5 9.1e-12 1 No_clan
Cotton_A_34664_CDS 13 75 13 75 PF00462.24 Glutaredoxin Domain 1 60 60 39.9 3.7e-10 1 CL0172
Cotton_A_10560_CDS 83 418 83 418 PF07992.14 Pyr_redox_2 Domain 1 294 294 194.3 2.5e-57 1 CL0063
Cotton_A_10560_CDS 437 548 437 550 PF02852.22 Pyr_redox_dim Domain 1 108 110 106.2 1e-30 1 CL0608
Cotton_A_40647_CDS 38 131 36 131 PF01190.17 Pollen_Ole_e_I Family 3 99 99 78.4 4.2e-22 1 CL0287
Cotton_A_19084_CDS 135 332 134 333 PF00337.22 Gal-bind_lectin Domain 3 133 134 150.4 2e-44 1 CL0004
Cotton_A_19084_CDS 380 560 379 567 PF01762.21 Galactosyl_T Family 2 187 195 100.5 1.1e-28 1 CL0110
Cotton_A_22576_CDS 3 50 1 50 PF04997.12 RNA_pol_Rpb1_1 Domain 264 312 312 38.4 8.6e-10 1 No_clan
Cotton_A_22576_CDS 52 84 52 85 PF00623.20 RNA_pol_Rpb1_2 Domain 1 33 166 29.5 7.8e-07 1 No_clan
Cotton_A_32045_CDS 64 149 63 149 PF18036.1 Ubiquitin_4 Domain 2 89 89 89.7 9.2e-26 1 CL0072
Cotton_A_18736_CDS 3 135 3 136 PF00091.25 Tubulin Domain 1 119 197 113.3 1.6e-32 1 CL0566
Cotton_A_38788_CDS 45 290 40 291 PF00141.23 peroxidase Domain 2 228 229 253.0 2.8e-75 1 CL0617
Cotton_A_08033_CDS 12 265 1 266 PF00067.22 p450 Domain 137 385 463 198.0 2.5e-58 1 No_clan
Cotton_A_16180_CDS 1 120 1 122 PF00833.18 Ribosomal_S17e Family 1 120 122 202.0 2.1e-60 1 No_clan
Cotton_A_32381_CDS 38 70 9 70 PF01058.22 Oxidored_q6 Family 99 131 131 29.6 4.9e-07 1 No_clan
Cotton_A_13071_CDS 116 258 114 261 PF00650.20 CRAL_TRIO Domain 3 153 159 81.0 7.5e-23 1 CL0512
Cotton_A_12408_CDS 229 268 229 273 PF10250.9 O-FucT Family 1 41 336 46.2 5e-12 1 CL0113
Cotton_A_12408_CDS 321 489 309 489 PF10250.9 O-FucT Family 187 336 336 109.0 3.8e-31 1 CL0113
Cotton_A_16089_CDS 33 139 32 139 PF00085.20 Thioredoxin Domain 2 103 103 103.6 4.7e-30 1 CL0172
Cotton_A_16089_CDS 169 353 169 354 PF13848.6 Thioredoxin_6 Domain 1 183 184 86.1 2.8e-24 1 CL0172
Cotton_A_16089_CDS 377 480 376 480 PF00085.20 Thioredoxin Domain 2 103 103 95.5 1.5e-27 1 CL0172
Cotton_A_25400_CDS 97 172 97 172 PF14829.6 GPAT_N Domain 1 76 76 126.8 2.4e-37 1 No_clan
Cotton_A_25400_CDS 214 365 210 369 PF01553.21 Acyltransferase Family 5 131 135 61.4 6.8e-17 1 CL0228
Cotton_A_18727_CDS 105 140 102 140 PF00400.32 WD40 Repeat 4 38 38 26.2 1e-05 1 CL0186
Cotton_A_06889_CDS 5 97 5 124 PF18052.1 Rx_N Domain 1 84 93 76.5 1.5e-21 1 No_clan
Cotton_A_06889_CDS 172 411 168 412 PF00931.22 NB-ARC Domain 5 251 252 174.3 2.5e-51 1 CL0023
Cotton_A_23223_CDS 5 169 5 175 PF00025.21 Arf Domain 1 167 175 251.2 3.8e-75 1 CL0023
Cotton_A_07100_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 46.6 2.9e-12 1 CL0123
Cotton_A_07100_CDS 71 111 67 112 PF00249.31 Myb_DNA-binding Domain 5 45 46 51.5 8.6e-14 1 CL0123
Cotton_A_32911_CDS 216 261 216 261 PF09329.11 zf-primase Domain 1 46 46 53.9 1.2e-14 1 No_clan
Cotton_A_12680_CDS 12 437 10 438 PF04597.14 Ribophorin_I Family 3 440 441 460.1 9.1e-138 1 No_clan
Cotton_A_28729_CDS 12 62 4 80 PF05910.12 DUF868 Family 55 103 279 50.1 2.9e-13 1 No_clan
Cotton_A_24403_CDS 31 157 30 158 PF04859.12 DUF641 Family 2 127 128 158.3 1.1e-46 1 No_clan
Cotton_A_07628_CDS 87 393 84 393 PF00291.25 PALP Family 4 294 294 126.4 1.5e-36 1 CL0063
Cotton_A_26119_CDS 116 205 111 217 PF07714.17 Pkinase_Tyr Domain 6 100 259 63.8 1.4e-17 1 CL0016
Cotton_A_18976_CDS 14 274 13 274 PF00069.25 Pkinase Domain 2 264 264 200.8 2.4e-59 1 CL0016
Cotton_A_18976_CDS 703 976 701 977 PF01263.20 Aldose_epim Family 3 300 301 216.8 3.9e-64 1 CL0103
Cotton_A_35311_CDS 53 206 38 215 PF00759.19 Glyco_hydro_9 Domain 26 162 411 152.3 2.6e-44 1 CL0059
Cotton_A_27329_CDS 145 188 144 188 PF13639.6 zf-RING_2 Domain 2 44 44 48.2 9.7e-13 1 CL0229
Cotton_A_20683_CDS 5 66 4 73 PF05486.12 SRP9-21 Domain 2 90 97 43.6 2.9e-11 1 CL0623
Cotton_A_06580_CDS 2 198 1 198 PF01201.22 Ribosomal_S8e Family 2 137 137 181.0 1.1e-53 1 No_clan
Cotton_A_29725_CDS 49 147 48 147 PF00970.24 FAD_binding_6 Domain 2 99 99 110.7 3.5e-32 1 CL0076
Cotton_A_29725_CDS 157 263 157 264 PF00175.21 NAD_binding_1 Domain 1 107 109 106.5 1.1e-30 1 CL0091
Cotton_A_36327_CDS 95 231 83 247 PF07082.11 DUF1350 Family 14 142 250 88.3 4.7e-25 1 CL0028
Cotton_A_36327_CDS 267 403 238 405 PF07082.11 DUF1350 Family 113 248 250 69.3 3e-19 1 CL0028
Cotton_A_33283_CDS 85 272 85 272 PF04669.13 Polysacc_synt_4 Family 1 190 190 247.7 5.9e-74 1 No_clan
Cotton_A_28742_CDS 38 93 18 95 PF05922.16 Inhibitor_I9 Domain 19 78 82 24.5 3.2e-05 1 CL0570
Cotton_A_06978_CDS 15 109 15 109 PF12796.7 Ank_2 Repeat 1 83 83 54.8 1e-14 1 CL0465
Cotton_A_06978_CDS 112 184 108 188 PF12796.7 Ank_2 Repeat 25 79 83 42.8 5.8e-11 1 CL0465
Cotton_A_06978_CDS 195 232 188 235 PF13857.6 Ank_5 Repeat 15 53 56 29.4 7.1e-07 1 CL0465
Cotton_A_04185_CDS 91 121 91 122 PF00641.18 zf-RanBP Domain 1 29 30 32.0 5.6e-08 1 CL0167
Cotton_A_04185_CDS 318 341 318 345 PF00076.22 RRM_1 Domain 1 24 70 21.7 0.00013 1 CL0221
Cotton_A_10251_CDS 6 66 1 67 PF00013.29 KH_1 Domain 9 65 66 25.0 1.3e-05 1 CL0007
Cotton_A_10251_CDS 124 169 122 189 PF00013.29 KH_1 Domain 3 49 66 37.3 1.8e-09 1 CL0007
Cotton_A_10251_CDS 201 268 200 270 PF00013.29 KH_1 Domain 2 64 66 49.6 2.6e-13 1 CL0007
Cotton_A_10251_CDS 418 480 417 481 PF00013.29 KH_1 Domain 2 65 66 27.1 2.7e-06 1 CL0007
Cotton_A_21879_CDS 16 148 5 149 PF00892.20 EamA Family 12 136 137 49.8 3.7e-13 1 CL0184
Cotton_A_21879_CDS 184 322 183 323 PF00892.20 EamA Family 2 136 137 65.4 5.9e-18 1 CL0184
Cotton_A_33441_CDS 27 82 23 82 PF13855.6 LRR_8 Repeat 6 61 61 40.7 1.5e-10 1 CL0022
Cotton_A_41240_CDS 303 378 300 379 PF00789.20 UBX Domain 6 80 81 59.4 3e-16 1 CL0072
Cotton_A_17586_CDS 99 226 98 262 PF01823.19 MACPF Domain 2 130 209 63.8 2.2e-17 1 CL0293
Cotton_A_07622_CDS 137 374 136 375 PF12146.8 Hydrolase_4 Family 2 238 239 242.3 4e-72 1 CL0028
Cotton_A_05996_CDS 132 182 132 182 PF08711.11 Med26 Domain 1 53 53 50.7 1.3e-13 1 No_clan
Cotton_A_06685_CDS 189 243 188 243 PF02045.15 CBFB_NFYA Family 2 56 56 91.2 4.6e-26 1 No_clan
Cotton_A_09704_CDS 26 169 25 169 PF10539.9 Dev_Cell_Death Domain 2 127 127 133.9 2.8e-39 1 No_clan
Cotton_A_31095_CDS 30 234 30 234 PF06999.12 Suc_Fer-like Family 1 195 195 148.4 2.2e-43 1 No_clan
Cotton_A_05897_CDS 4 74 2 75 PF02798.20 GST_N Domain 3 75 76 58.1 8.5e-16 1 CL0172
Cotton_A_05897_CDS 120 195 96 195 PF00043.25 GST_C Domain 23 93 93 23.2 5.8e-05 1 CL0497
Cotton_A_17738_CDS 41 273 38 275 PF00481.21 PP2C Family 4 253 258 220.2 3.5e-65 1 CL0238
Cotton_A_09673_CDS 64 237 64 237 PF10602.9 RPN7 Family 1 174 174 198.3 7.5e-59 1 CL0020
Cotton_A_09673_CDS 253 355 252 356 PF01399.27 PCI Domain 2 104 105 58.5 7.7e-16 1 CL0123
Cotton_A_18001_CDS 44 125 23 133 PF11790.8 Glyco_hydro_cc Family 127 195 239 26.6 4e-06 1 CL0058
Cotton_A_27267_CDS 148 196 147 196 PF13041.6 PPR_2 Repeat 2 50 50 38.9 7.1e-10 1 CL0020
Cotton_A_27267_CDS 221 249 220 249 PF01535.20 PPR Family 2 30 31 14.2 0.04 1 CL0020
Cotton_A_27267_CDS 291 320 290 320 PF01535.20 PPR Family 2 31 31 13.2 0.079 1 CL0020
Cotton_A_30356_CDS 56 116 36 118 PF00071.22 Ras Domain 103 160 162 43.6 2.2e-11 1 CL0023
Cotton_A_19852_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 52.6 3.8e-14 1 CL0123
Cotton_A_19852_CDS 67 112 67 112 PF00249.31 Myb_DNA-binding Domain 1 46 46 51.6 7.9e-14 1 CL0123
Cotton_A_07401_CDS 126 202 126 203 PF13456.6 RVT_3 Domain 1 77 124 46.3 3.2e-12 1 CL0219
Cotton_A_36024_CDS 5 286 5 286 PF06217.12 GAGA_bind Domain 1 295 295 380.9 7.9e-114 1 No_clan
Cotton_A_36659_CDS 4 303 1 304 PF04142.15 Nuc_sug_transp Family 7 314 315 188.9 1.2e-55 1 CL0184
Cotton_A_06784_CDS 391 438 390 439 PF00628.29 PHD Domain 2 50 52 31.8 9.3e-08 1 CL0390
Cotton_A_06784_CDS 695 820 694 821 PF01426.18 BAH Domain 2 121 122 34.5 1.6e-08 1 No_clan
Cotton_A_25137_CDS 77 235 75 235 PF04755.12 PAP_fibrillin Family 3 198 198 137.2 6.7e-40 1 No_clan
Cotton_A_08579_CDS 23 295 20 296 PF01263.20 Aldose_epim Family 4 300 301 228.7 9.7e-68 1 CL0103
Cotton_A_09743_CDS 68 248 67 248 PF09439.10 SRPRB Domain 2 181 181 128.2 2.2e-37 1 CL0023
Cotton_A_01436_CDS 69 128 67 128 PF00046.29 Homeodomain Domain 3 57 57 69.0 2.2e-19 1 CL0123
Cotton_A_22837_CDS 21 545 21 561 PF00463.21 ICL Domain 1 520 526 909.0 8.1e-274 1 CL0151
Cotton_A_31816_CDS 50 123 35 130 PF00078.27 RVT_1 Family 119 197 222 55.9 4.1e-15 1 CL0027
Cotton_A_31816_CDS 104 168 102 175 PF17919.1 RT_RNaseH_2 Domain 3 72 100 47.0 2.1e-12 1 CL0219
Cotton_A_31899_CDS 4 43 1 47 PF00643.24 zf-B_box Domain 5 38 42 28.7 1.1e-06 1 No_clan
Cotton_A_31899_CDS 56 92 55 101 PF00643.24 zf-B_box Domain 2 37 42 31.4 1.5e-07 1 No_clan
Cotton_A_40226_CDS 6 91 5 99 PF12796.7 Ank_2 Repeat 2 73 83 28.7 1.5e-06 1 CL0465
Cotton_A_05753_CDS 450 484 442 484 PF00400.32 WD40 Repeat 7 38 38 20.7 0.00053 1 CL0186
Cotton_A_05753_CDS 917 951 913 951 PF00400.32 WD40 Repeat 5 38 38 17.9 0.0043 1 CL0186
Cotton_A_19163_CDS 26 165 24 168 PF00139.19 Lectin_legB Domain 4 152 249 149.8 9.6e-44 1 CL0004
Cotton_A_39266_CDS 51 119 50 120 PF03735.14 ENT Family 2 69 70 95.4 1.5e-27 1 No_clan
Cotton_A_38534_CDS 98 191 97 197 PF03168.13 LEA_2 Domain 2 94 101 29.5 8.3e-07 1 CL0159
Cotton_A_13638_CDS 48 84 15 101 PF01342.21 SAND Family 27 63 77 23.2 4e-05 1 No_clan
Cotton_A_11280_CDS 22 133 20 133 PF04398.12 DUF538 Family 3 112 112 113.8 5.3e-33 1 No_clan
Cotton_A_05496_CDS 151 179 150 180 PF01535.20 PPR Family 2 30 31 13.0 0.097 1 CL0020
Cotton_A_05496_CDS 288 316 287 317 PF01535.20 PPR Family 2 30 31 10.5 0.58 1 CL0020
Cotton_A_05496_CDS 462 489 460 490 PF01535.20 PPR Family 3 30 31 18.9 0.0012 1 CL0020
Cotton_A_07810_CDS 631 683 630 684 PF00249.31 Myb_DNA-binding Domain 2 44 46 27.6 2.4e-06 1 CL0123
Cotton_A_10884_CDS 75 593 74 594 PF01019.21 G_glu_transpept Domain 2 511 512 578.8 1e-173 1 CL0052
Cotton_A_09363_CDS 3 74 2 74 PF05251.12 Ost5 Family 2 73 73 99.9 6.8e-29 1 No_clan
Cotton_A_36426_CDS 14 83 4 85 PF13456.6 RVT_3 Domain 51 122 124 35.7 6.4e-09 1 CL0219
Cotton_A_21862_CDS 11 51 10 54 PF00319.18 SRF-TF Domain 2 42 48 46.3 2.1e-12 1 No_clan
Cotton_A_28992_CDS 55 91 55 92 PF01428.16 zf-AN1 Family 1 39 40 30.5 3e-07 1 No_clan
Cotton_A_32077_CDS 54 260 53 260 PF02681.14 DUF212 Family 2 128 128 122.2 1.4e-35 1 CL0525
Cotton_A_16346_CDS 18 287 18 292 PF01073.19 3Beta_HSD Family 1 274 280 228.1 1.1e-67 1 CL0063
Cotton_A_16346_CDS 387 541 387 543 PF02453.17 Reticulon Family 1 153 157 117.5 5.1e-34 1 CL0484
Cotton_A_30114_CDS 5 80 5 117 PF13456.6 RVT_3 Domain 1 75 124 24.3 2.1e-05 1 CL0219
Cotton_A_07075_CDS 241 408 241 408 PF12214.8 TPX2_importin Family 1 166 166 198.0 1.2e-58 1 No_clan
Cotton_A_14021_CDS 100 261 99 265 PF00270.29 DEAD Domain 2 171 176 137.7 3.4e-40 1 CL0023
Cotton_A_14021_CDS 301 409 300 409 PF00271.31 Helicase_C Family 2 111 111 100.2 8.3e-29 1 CL0023
Cotton_A_23020_CDS 1 60 1 60 PF08069.12 Ribosomal_S13_N Domain 1 60 60 110.8 2.3e-32 1 No_clan
Cotton_A_23020_CDS 74 134 70 140 PF00312.22 Ribosomal_S15 Domain 4 68 81 53.1 2.7e-14 1 CL0600
Cotton_A_37530_CDS 215 234 213 235 PF00560.33 LRR_1 Repeat 3 22 23 11.4 0.39 1 CL0022
Cotton_A_37530_CDS 405 462 404 462 PF13855.6 LRR_8 Repeat 4 61 61 34.8 9.9e-09 1 CL0022
Cotton_A_18295_CDS 14 37 14 39 PF13912.6 zf-C2H2_6 Domain 1 24 27 43.5 2.1e-11 1 CL0361
Cotton_A_09685_CDS 9 100 9 102 PF11605.8 Vps36_ESCRT-II Family 1 89 92 54.6 9.5e-15 1 CL0266
Cotton_A_09685_CDS 191 415 191 416 PF04157.16 EAP30 Family 1 235 236 140.6 4.9e-41 1 CL0123
Cotton_A_22255_CDS 128 248 126 254 PF16719.5 SAWADEE Domain 3 135 141 133.3 6e-39 1 CL0049
Cotton_A_27084_CDS 79 131 77 132 PF00046.29 Homeodomain Domain 4 56 57 55.9 2.8e-15 1 CL0123
Cotton_A_27084_CDS 133 173 133 175 PF02183.18 HALZ Coiled-coil 1 41 43 53.1 2.7e-14 1 No_clan
Cotton_A_10578_CDS 80 326 56 331 PF00481.21 PP2C Family 35 251 258 121.8 3.8e-35 1 CL0238
Cotton_A_30060_CDS 7 63 5 64 PF00403.26 HMA Domain 3 61 62 55.2 7.1e-15 1 No_clan
Cotton_A_26498_CDS 162 687 162 687 PF03141.16 Methyltransf_29 Family 1 506 506 469.6 1.1e-140 1 CL0063
Cotton_A_05976_CDS 281 378 262 384 PF01544.18 CorA Family 189 285 292 31.0 1.5e-07 1 No_clan
Cotton_A_14115_CDS 105 199 97 204 PF12796.7 Ank_2 Repeat 11 74 83 42.6 6.9e-11 1 CL0465
Cotton_A_14115_CDS 232 303 228 314 PF12796.7 Ank_2 Repeat 16 75 83 39.8 5e-10 1 CL0465
Cotton_A_14115_CDS 444 559 443 561 PF13962.6 PGG Domain 2 113 116 87.4 5.9e-25 1 No_clan
Cotton_A_11361_CDS 4 42 2 47 PF00643.24 zf-B_box Domain 5 37 42 25.1 1.4e-05 1 No_clan
Cotton_A_03661_CDS 40 124 39 125 PF03083.16 MtN3_slv Family 2 86 87 90.3 6.1e-26 1 CL0141
Cotton_A_05736_CDS 27 165 27 166 PF03018.14 Dirigent Family 1 147 148 148.5 1.2e-43 1 CL0650
Cotton_A_22412_CDS 25 104 23 105 PF00352.21 TBP Domain 3 84 85 113.0 4.6e-33 1 CL0407
Cotton_A_22412_CDS 113 195 113 196 PF00352.21 TBP Domain 1 84 85 112.3 7.9e-33 1 CL0407
Cotton_A_40092_CDS 6 52 4 55 PF00249.31 Myb_DNA-binding Domain 3 42 46 24.8 1.8e-05 1 CL0123
Cotton_A_40092_CDS 133 177 133 178 PF00249.31 Myb_DNA-binding Domain 3 45 46 41.2 1.4e-10 1 CL0123
Cotton_A_27618_CDS 227 421 227 434 PF04577.14 DUF563 Family 1 183 209 68.1 1.2e-18 1 No_clan
Cotton_A_39452_CDS 28 395 28 395 PF12819.7 Malectin_like Domain 1 336 336 139.7 1.3e-40 1 CL0202
Cotton_A_39452_CDS 536 637 533 697 PF00069.25 Pkinase Domain 108 203 264 77.7 8.9e-22 1 CL0016
Cotton_A_38803_CDS 4 214 1 215 PF00141.23 peroxidase Domain 35 228 229 141.4 3.5e-41 1 CL0617
Cotton_A_33463_CDS 115 165 115 170 PF16450.5 Prot_ATP_ID_OB Domain 1 52 57 29.7 4.5e-07 1 CL0021
Cotton_A_33463_CDS 228 361 228 361 PF00004.29 AAA Domain 1 132 132 137.5 3.4e-40 1 CL0023
Cotton_A_33463_CDS 383 427 383 427 PF17862.1 AAA_lid_3 Domain 1 45 45 40.0 2.5e-10 1 CL0671
Cotton_A_07651_CDS 49 314 48 316 PF00069.25 Pkinase Domain 2 259 264 140.9 4.7e-41 1 CL0016
Cotton_A_22540_CDS 14 88 14 88 PF07765.12 KIP1 Family 1 74 74 124.6 1.3e-36 1 No_clan
Cotton_A_17448_CDS 23 240 20 241 PF02230.16 Abhydrolase_2 Domain 5 209 217 128.1 4.1e-37 1 CL0028
Cotton_A_29054_CDS 35 98 35 98 PF00462.24 Glutaredoxin Domain 1 60 60 51.6 8.1e-14 1 CL0172
Cotton_A_12880_CDS 3 201 3 203 PF00091.25 Tubulin Domain 1 184 197 207.7 1.9e-61 1 CL0566
Cotton_A_12880_CDS 251 380 251 381 PF03953.17 Tubulin_C Domain 1 125 126 168.2 8.4e-50 1 CL0442
Cotton_A_19429_CDS 88 142 87 142 PF00046.29 Homeodomain Domain 3 57 57 56.0 2.7e-15 1 CL0123
Cotton_A_19429_CDS 143 183 143 185 PF02183.18 HALZ Coiled-coil 1 41 43 41.5 1.1e-10 1 No_clan
Cotton_A_16050_CDS 32 231 32 231 PF01027.20 Bax1-I Family 1 207 207 114.3 6.7e-33 1 CL0453
Cotton_A_20903_CDS 52 524 50 524 PF00501.28 AMP-binding Family 3 423 423 329.6 2.2e-98 1 CL0378
Cotton_A_18309_CDS 15 150 15 150 PF03435.18 Sacchrp_dh_NADP Family 1 130 130 59.7 3.4e-16 1 CL0063
Cotton_A_35965_CDS 19 52 17 53 PF08557.10 Lipid_DES Domain 3 36 37 70.6 5.2e-20 1 No_clan
Cotton_A_35965_CDS 76 294 54 303 PF00487.24 FA_desaturase Domain 2 244 254 75.4 5.9e-21 1 No_clan
Cotton_A_18628_CDS 129 239 128 239 PF02847.17 MA3 Family 2 113 113 87.5 5.9e-25 1 CL0020
Cotton_A_18628_CDS 293 403 292 403 PF02847.17 MA3 Family 2 113 113 93.6 7e-27 1 CL0020
Cotton_A_18628_CDS 427 536 426 537 PF02847.17 MA3 Family 2 112 113 85.5 2.3e-24 1 CL0020
Cotton_A_18628_CDS 590 697 589 698 PF02847.17 MA3 Family 2 112 113 98.2 2.7e-28 1 CL0020
Cotton_A_17717_CDS 139 614 139 629 PF00324.21 AA_permease Family 1 461 479 212.7 7.6e-63 1 CL0062
Cotton_A_17717_CDS 648 769 647 775 PF03522.15 SLC12 Family 2 119 429 49.0 4.5e-13 1 No_clan
Cotton_A_17717_CDS 780 979 775 980 PF03522.15 SLC12 Family 241 428 429 87.2 1.2e-24 1 No_clan
Cotton_A_23326_CDS 23 359 23 359 PF00443.29 UCH Family 1 257 257 208.1 1.5e-61 1 CL0125
Cotton_A_01902_CDS 147 249 136 256 PF01210.23 NAD_Gly3P_dh_N Family 57 149 157 41.8 1.1e-10 1 CL0063
Cotton_A_01902_CDS 275 430 275 431 PF07479.14 NAD_Gly3P_dh_C Domain 1 141 142 84.8 6.6e-24 1 CL0106
Cotton_A_02680_CDS 71 140 71 149 PF01233.19 NMT Domain 1 70 160 85.7 2.9e-24 1 CL0257
Cotton_A_07548_CDS 73 333 73 333 PF04080.13 Per1 Family 1 255 255 268.4 7.1e-80 1 CL0192
Cotton_A_12071_CDS 43 283 43 283 PF07250.11 Glyoxal_oxid_N Family 1 240 240 344.6 2.3e-103 1 No_clan
Cotton_A_12071_CDS 435 535 435 536 PF09118.11 DUF1929 Domain 1 95 96 93.7 6.5e-27 1 CL0159
Cotton_A_01804_CDS 255 330 254 352 PF00622.28 SPRY Family 2 78 120 34.7 1.6e-08 1 CL0004
Cotton_A_32737_CDS 144 308 143 309 PF00270.29 DEAD Domain 2 175 176 148.4 1.7e-43 1 CL0023
Cotton_A_32737_CDS 345 451 342 451 PF00271.31 Helicase_C Family 4 111 111 97.3 6.5e-28 1 CL0023
Cotton_A_16843_CDS 31 101 30 102 PF04564.15 U-box Domain 2 72 73 43.6 2.4e-11 1 CL0229
Cotton_A_16843_CDS 306 342 304 343 PF00514.23 Arm Repeat 4 40 41 22.9 6.4e-05 1 CL0020
Cotton_A_16843_CDS 345 383 344 384 PF00514.23 Arm Repeat 2 40 41 24.6 1.8e-05 1 CL0020
Cotton_A_00082_CDS 38 203 37 203 PF04727.13 ELMO_CED12 Family 2 177 177 163.1 6.8e-48 1 No_clan
Cotton_A_09986_CDS 21 110 21 110 PF00447.17 HSF_DNA-bind Domain 1 96 96 104.1 4.5e-30 1 CL0123
Cotton_A_19014_CDS 93 492 87 493 PF00450.22 Peptidase_S10 Domain 7 418 419 419.3 2.2e-125 1 CL0028
Cotton_A_34929_CDS 35 244 35 244 PF00314.17 Thaumatin Domain 1 214 214 281.3 4.7e-84 1 CL0293
Cotton_A_17142_CDS 124 237 124 237 PF03479.15 DUF296 Domain 1 107 107 100.7 5.6e-29 1 CL0615
Cotton_A_26690_CDS 28 115 28 129 PF14226.6 DIOX_N Family 1 98 118 57.4 2.2e-15 1 CL0029
Cotton_A_26690_CDS 170 277 169 279 PF03171.20 2OG-FeII_Oxy Domain 2 99 101 92.1 2.6e-26 1 CL0029
Cotton_A_17021_CDS 28 97 27 97 PF00076.22 RRM_1 Domain 2 70 70 71.2 4.5e-20 1 CL0221
Cotton_A_17021_CDS 114 184 114 185 PF00076.22 RRM_1 Domain 1 69 70 71.8 3e-20 1 CL0221
Cotton_A_03375_CDS 21 107 21 107 PF05922.16 Inhibitor_I9 Domain 1 82 82 41.3 1.8e-10 1 CL0570
Cotton_A_03375_CDS 134 580 133 600 PF00082.22 Peptidase_S8 Domain 2 285 298 173.2 7.5e-51 1 No_clan
Cotton_A_03375_CDS 387 446 369 460 PF02225.22 PA Family 20 79 89 26.8 3.9e-06 1 CL0364
Cotton_A_03375_CDS 655 756 655 756 PF17766.1 fn3_6 Domain 1 99 99 101.6 2.1e-29 1 CL0159
Cotton_A_25520_CDS 109 285 109 286 PF00800.18 PDT Family 1 182 183 184.4 1.7e-54 1 CL0177
Cotton_A_05032_CDS 30 454 30 454 PF00909.21 Ammonium_transp Family 1 399 399 272.6 4.4e-81 1 No_clan
Cotton_A_29857_CDS 64 257 64 257 PF03798.16 TRAM_LAG1_CLN8 Domain 1 198 198 106.1 1.9e-30 1 No_clan
Cotton_A_30870_CDS 54 89 51 89 PF00400.32 WD40 Repeat 4 38 38 22.0 0.00021 1 CL0186
Cotton_A_30870_CDS 95 131 93 131 PF00400.32 WD40 Repeat 3 38 38 30.6 4e-07 1 CL0186
Cotton_A_30870_CDS 137 173 135 173 PF00400.32 WD40 Repeat 3 38 38 42.6 6.7e-11 1 CL0186
Cotton_A_30870_CDS 177 215 177 215 PF00400.32 WD40 Repeat 1 38 38 30.4 4.6e-07 1 CL0186
Cotton_A_30870_CDS 697 824 696 829 PF13925.6 Katanin_con80 Domain 2 144 160 121.5 3.2e-35 1 No_clan
Cotton_A_17766_CDS 74 160 74 167 PF01453.24 B_lectin Domain 1 93 105 62.4 5e-17 1 No_clan
Cotton_A_17766_CDS 266 335 233 339 PF00954.20 S_locus_glycop Domain 43 107 111 32.8 8.2e-08 1 No_clan
Cotton_A_17766_CDS 531 798 528 800 PF00069.25 Pkinase Domain 4 260 264 159.6 9.2e-47 1 CL0016
Cotton_A_15310_CDS 184 364 184 364 PF00270.29 DEAD Domain 1 176 176 173.8 2.7e-51 1 CL0023
Cotton_A_15310_CDS 399 514 398 514 PF00271.31 Helicase_C Family 2 111 111 103.4 8e-30 1 CL0023
Cotton_A_33748_CDS 31 74 29 74 PF08263.12 LRRNT_2 Family 3 41 41 28.0 2e-06 1 No_clan
Cotton_A_33748_CDS 174 231 174 235 PF13855.6 LRR_8 Repeat 1 58 61 29.4 4.8e-07 1 CL0022
Cotton_A_33748_CDS 248 270 248 294 PF00560.33 LRR_1 Repeat 1 23 23 9.9 1.3 1 CL0022
Cotton_A_33748_CDS 296 318 296 340 PF00560.33 LRR_1 Repeat 1 23 23 9.3 2 1 CL0022
Cotton_A_33748_CDS 343 403 343 403 PF13855.6 LRR_8 Repeat 1 61 61 31.6 9.9e-08 1 CL0022
Cotton_A_33748_CDS 711 983 710 983 PF07714.17 Pkinase_Tyr Domain 2 259 259 156.2 9.4e-46 1 CL0016
Cotton_A_22937_CDS 50 499 39 505 PF00067.22 p450 Domain 12 457 463 247.8 1.9e-73 1 No_clan
Cotton_A_09200_CDS 62 173 62 173 PF04781.12 DUF627 Family 1 108 108 109.8 6.2e-32 1 No_clan
Cotton_A_09200_CDS 331 841 330 842 PF04780.12 DUF629 Family 2 493 494 611.9 7.1e-184 1 No_clan
Cotton_A_09200_CDS 1265 1566 1258 1582 PF00443.29 UCH Family 7 243 257 81.8 5.3e-23 1 CL0125
Cotton_A_36205_CDS 15 217 3 217 PF03140.15 DUF247 Family 189 397 397 192.2 1.6e-56 1 No_clan
Cotton_A_06540_CDS 61 353 60 354 PF01095.19 Pectinesterase Family 2 297 298 228.1 9.6e-68 1 CL0268
Cotton_A_27655_CDS 56 101 56 101 PF12906.7 RINGv Domain 1 48 48 47.1 1.9e-12 1 CL0229
Cotton_A_27655_CDS 107 224 107 224 PF12428.8 DUF3675 Family 1 119 119 145.4 1e-42 1 No_clan
Cotton_A_22593_CDS 25 316 25 316 PF00069.25 Pkinase Domain 1 264 264 222.0 8.3e-66 1 CL0016
Cotton_A_18131_CDS 96 336 96 336 PF07137.11 VDE Domain 1 238 238 341.0 3.5e-102 1 CL0116
Cotton_A_30861_CDS 54 205 40 206 PF13668.6 Ferritin_2 Domain 16 135 136 26.1 8e-06 1 CL0044
Cotton_A_14339_CDS 63 200 63 200 PF03140.15 DUF247 Family 1 144 397 87.7 9.2e-25 1 No_clan
Cotton_A_14152_CDS 62 121 61 121 PF13855.6 LRR_8 Repeat 2 61 61 28.5 9.1e-07 1 CL0022
Cotton_A_14152_CDS 142 200 140 200 PF13855.6 LRR_8 Repeat 3 61 61 27.1 2.6e-06 1 CL0022
Cotton_A_14152_CDS 225 423 221 492 PF00069.25 Pkinase Domain 6 200 264 127.7 4.9e-37 1 CL0016
Cotton_A_02494_CDS 82 304 82 304 PF01255.19 Prenyltransf Family 1 224 224 256.0 2.8e-76 1 No_clan
Cotton_A_29518_CDS 1 86 1 92 PF00752.17 XPG_N Family 1 91 101 37.4 2.7e-09 1 CL0280
Cotton_A_29518_CDS 129 213 128 213 PF00867.18 XPG_I Family 2 94 94 77.2 9.3e-22 1 CL0464
Cotton_A_00256_CDS 12 138 11 138 PF02365.15 NAM Family 2 126 126 118.3 3.9e-34 1 No_clan
Cotton_A_28933_CDS 74 234 74 234 PF04759.13 DUF617 Family 1 163 163 204.3 1.2e-60 1 No_clan
Cotton_A_15900_CDS 65 209 64 209 PF09273.11 Rubis-subs-bind Domain 2 129 129 47.6 2.6e-12 1 No_clan
Cotton_A_17655_CDS 159 367 159 368 PF00264.20 Tyrosinase Domain 1 221 222 115.2 5.1e-33 1 CL0205
Cotton_A_17655_CDS 374 425 374 425 PF12142.8 PPO1_DWL Domain 1 52 52 98.1 1.7e-28 1 No_clan
Cotton_A_17655_CDS 455 582 455 582 PF12143.8 PPO1_KFDV Domain 1 130 130 179.7 2.4e-53 1 CL0122
Cotton_A_37899_CDS 42 131 42 131 PF00447.17 HSF_DNA-bind Domain 1 96 96 100.1 8.1e-29 1 CL0123
Cotton_A_27507_CDS 17 268 17 269 PF00149.28 Metallophos Domain 1 203 204 49.1 9.8e-13 1 CL0163
Cotton_A_24449_CDS 31 172 27 172 PF10604.9 Polyketide_cyc2 Family 5 143 143 78.2 7e-22 1 CL0209
Cotton_A_04858_CDS 42 146 39 148 PF00651.31 BTB Domain 5 109 111 53.6 2.2e-14 1 CL0033
Cotton_A_16390_CDS 190 371 175 371 PF13561.6 adh_short_C2 Domain 55 234 234 170.5 4.1e-50 1 CL0063
Cotton_A_05958_CDS 155 178 152 180 PF14383.6 VARLMGL Domain 6 29 32 31.5 8.8e-08 1 No_clan
Cotton_A_05958_CDS 594 737 594 737 PF14309.6 DUF4378 Family 1 165 165 62.6 5.7e-17 1 No_clan
Cotton_A_36188_CDS 61 329 50 331 PF01094.28 ANF_receptor Family 76 352 354 110.5 9.3e-32 1 CL0144
Cotton_A_36188_CDS 392 699 387 705 PF00497.20 SBP_bac_3 Domain 17 213 225 44.5 1.2e-11 1 CL0177
Cotton_A_36188_CDS 489 594 489 645 PF00060.26 Lig_chan Family 1 115 149 71.9 4.8e-20 1 CL0030
Cotton_A_15811_CDS 95 340 92 340 PF00069.25 Pkinase Domain 4 264 264 228.9 6.7e-68 1 CL0016
Cotton_A_17899_CDS 16 50 14 59 PF00646.33 F-box Domain 3 37 48 26.0 6.2e-06 1 CL0271
Cotton_A_17899_CDS 370 411 366 411 PF08387.10 FBD Family 5 46 46 32.0 8.4e-08 1 No_clan
Cotton_A_05017_CDS 92 322 91 329 PF05057.14 DUF676 Family 2 214 219 212.1 6.8e-63 1 CL0028
Cotton_A_22002_CDS 135 180 133 181 PF00514.23 Arm Repeat 3 40 41 20.3 0.0004 1 CL0020
Cotton_A_22002_CDS 191 222 184 223 PF00514.23 Arm Repeat 9 40 41 26.5 4.6e-06 1 CL0020
Cotton_A_22002_CDS 225 264 225 265 PF00514.23 Arm Repeat 1 40 41 33.2 3.6e-08 1 CL0020
Cotton_A_22002_CDS 309 348 309 349 PF00514.23 Arm Repeat 1 40 41 23.8 3.3e-05 1 CL0020
Cotton_A_22002_CDS 530 632 528 634 PF00651.31 BTB Domain 4 109 111 86.8 1.1e-24 1 CL0033
Cotton_A_11300_CDS 71 409 69 413 PF01094.28 ANF_receptor Family 3 350 354 144.2 5.4e-42 1 CL0144
Cotton_A_11300_CDS 498 808 494 809 PF00497.20 SBP_bac_3 Domain 20 224 225 68.2 6.7e-19 1 CL0177
Cotton_A_11300_CDS 590 837 589 841 PF00060.26 Lig_chan Family 2 144 149 109.6 1.2e-31 1 CL0030
Cotton_A_05790_CDS 8 121 8 121 PF16906.5 Ribosomal_L26 Family 1 82 82 127.8 1.6e-37 1 No_clan
Cotton_A_05790_CDS 51 82 51 82 PF00467.29 KOW Family 1 32 32 38.0 1e-09 1 CL0107
Cotton_A_14842_CDS 93 131 92 132 PF00514.23 Arm Repeat 2 40 41 30.7 2.2e-07 1 CL0020
Cotton_A_14842_CDS 134 172 133 173 PF00514.23 Arm Repeat 2 40 41 26.3 5.2e-06 1 CL0020
Cotton_A_14842_CDS 176 213 175 214 PF00514.23 Arm Repeat 3 40 41 25.2 1.1e-05 1 CL0020
Cotton_A_03542_CDS 34 190 34 190 PF04862.12 DUF642 Domain 1 157 157 233.5 8.8e-70 1 CL0202
Cotton_A_03542_CDS 202 368 201 369 PF04862.12 DUF642 Domain 2 156 157 54.6 1e-14 1 CL0202
Cotton_A_38276_CDS 2 82 1 82 PF00685.27 Sulfotransfer_1 Domain 193 267 267 52.6 4.3e-14 1 CL0023
Cotton_A_21534_CDS 1 86 1 88 PF02362.21 B3 Family 5 97 101 53.6 1.5e-14 1 CL0405
Cotton_A_16623_CDS 18 40 17 40 PF01754.16 zf-A20 Family 2 24 24 44.4 1.1e-11 1 No_clan
Cotton_A_16623_CDS 110 146 110 147 PF01428.16 zf-AN1 Family 1 39 40 41.7 9.4e-11 1 No_clan
Cotton_A_33764_CDS 32 189 32 189 PF04862.12 DUF642 Domain 1 157 157 195.8 3.5e-58 1 CL0202
Cotton_A_33764_CDS 224 367 200 368 PF04862.12 DUF642 Domain 19 156 157 68.5 5.6e-19 1 CL0202
Cotton_A_18102_CDS 46 331 39 332 PF01095.19 Pectinesterase Family 8 297 298 248.1 7.4e-74 1 CL0268
Cotton_A_28408_CDS 153 344 140 471 PF00266.19 Aminotran_5 Domain 46 236 371 22.3 5.4e-05 1 CL0061
Cotton_A_17708_CDS 82 136 75 139 PF00076.22 RRM_1 Domain 15 66 70 30.8 1.9e-07 1 CL0221
Cotton_A_17708_CDS 406 606 406 606 PF08662.11 eIF2A Family 1 194 194 218.9 5.4e-65 1 CL0186
Cotton_A_03526_CDS 5 191 4 191 PF04525.12 LOR Domain 2 187 187 150.6 3.5e-44 1 CL0395
Cotton_A_11721_CDS 29 102 27 168 PF13947.6 GUB_WAK_bind Domain 3 75 106 36.9 4.7e-09 1 No_clan
Cotton_A_11721_CDS 322 584 319 586 PF00069.25 Pkinase Domain 4 260 264 141.8 2.5e-41 1 CL0016
Cotton_A_21473_CDS 52 149 40 151 PF13456.6 RVT_3 Domain 17 116 124 36.2 4.4e-09 1 CL0219
Cotton_A_31218_CDS 181 223 181 224 PF06203.14 CCT Motif 1 43 44 60.0 1.7e-16 1 CL0281
Cotton_A_17143_CDS 9 97 9 123 PF18052.1 Rx_N Domain 1 89 93 91.2 3.8e-26 1 No_clan
Cotton_A_17143_CDS 175 395 174 414 PF00931.22 NB-ARC Domain 2 215 252 154.4 2.9e-45 1 CL0023
Cotton_A_29854_CDS 287 652 287 652 PF03514.14 GRAS Family 1 374 374 438.8 1.5e-131 1 CL0063
Cotton_A_01646_CDS 33 67 33 68 PF13445.6 zf-RING_UBOX Domain 1 38 39 23.7 3.5e-05 1 CL0229
Cotton_A_27311_CDS 102 353 102 355 PF12697.7 Abhydrolase_6 Domain 1 218 220 63.8 3.3e-17 1 CL0028
Cotton_A_37908_CDS 49 192 49 194 PF13874.6 Nup54 Domain 1 137 140 104.2 5.9e-30 1 No_clan
Cotton_A_26890_CDS 9 131 9 144 PF00179.26 UQ_con Domain 1 123 140 69.8 1.7e-19 1 CL0208
Cotton_A_31911_CDS 77 218 75 218 PF04043.15 PMEI Domain 3 154 154 41.3 1.9e-10 1 No_clan
Cotton_A_29557_CDS 2 142 1 143 PF04535.12 DUF588 Domain 15 149 150 109.8 9.8e-32 1 CL0396
Cotton_A_18122_CDS 39 104 39 105 PF00076.22 RRM_1 Domain 1 69 70 35.2 8.1e-09 1 CL0221
Cotton_A_18122_CDS 392 465 392 466 PF00076.22 RRM_1 Domain 1 69 70 38.2 9.2e-10 1 CL0221
Cotton_A_13043_CDS 11 45 8 46 PF00400.32 WD40 Repeat 5 37 38 15.0 0.033 1 CL0186
Cotton_A_13043_CDS 59 93 55 93 PF00400.32 WD40 Repeat 5 38 38 28.4 2e-06 1 CL0186
Cotton_A_13043_CDS 101 135 97 135 PF00400.32 WD40 Repeat 5 38 38 29.9 6.7e-07 1 CL0186
Cotton_A_13043_CDS 146 181 138 181 PF00400.32 WD40 Repeat 6 38 38 26.2 1e-05 1 CL0186
Cotton_A_13043_CDS 189 223 185 223 PF00400.32 WD40 Repeat 5 38 38 31.1 2.9e-07 1 CL0186
Cotton_A_13043_CDS 230 263 227 263 PF00400.32 WD40 Repeat 4 38 38 21.2 0.00038 1 CL0186
Cotton_A_13043_CDS 299 322 285 322 PF00400.32 WD40 Repeat 14 37 38 18.8 0.0022 1 CL0186
Cotton_A_17886_CDS 528 873 528 873 PF12719.7 Cnd3 Family 1 294 294 205.2 1.2e-60 1 CL0020
Cotton_A_18773_CDS 98 194 96 198 PF04367.13 DUF502 Family 6 102 106 87.5 4.7e-25 1 No_clan
Cotton_A_07485_CDS 113 209 103 211 PF00787.24 PX Domain 15 111 113 53.6 1.9e-14 1 No_clan
Cotton_A_04311_CDS 276 473 245 473 PF00069.25 Pkinase Domain 95 264 264 73.6 1.6e-20 1 CL0016
Cotton_A_08645_CDS 52 337 45 340 PF00128.24 Alpha-amylase Domain 13 324 337 56.5 3.4e-15 1 CL0058
Cotton_A_08645_CDS 359 416 359 417 PF07821.12 Alpha-amyl_C2 Domain 1 57 58 66.7 1.5e-18 1 CL0369
Cotton_A_02059_CDS 310 420 306 422 PF00067.22 p450 Domain 294 401 463 53.9 1.3e-14 1 No_clan
Cotton_A_07749_CDS 70 103 69 103 PF08880.11 QLQ Domain 2 35 35 30.9 1.7e-07 1 No_clan
Cotton_A_07749_CDS 140 182 140 182 PF08879.10 WRC Domain 1 43 43 67.6 5.5e-19 1 No_clan
Cotton_A_07749_CDS 337 374 336 377 PF08879.10 WRC Domain 2 39 43 66.4 1.3e-18 1 No_clan
Cotton_A_33716_CDS 305 351 303 352 PF13920.6 zf-C3HC4_3 Domain 3 49 50 54.7 6.6e-15 1 CL0229
Cotton_A_11072_CDS 44 163 44 164 PF00917.26 MATH Domain 1 112 113 76.0 2.4e-21 1 CL0389
Cotton_A_11072_CDS 182 502 182 502 PF00443.29 UCH Family 1 257 257 160.5 5.1e-47 1 CL0125
Cotton_A_11072_CDS 606 858 606 858 PF12436.8 USP7_ICP0_bdg Family 1 240 240 255.3 4.6e-76 1 CL0072
Cotton_A_11072_CDS 868 1077 867 1079 PF14533.6 USP7_C2 Family 2 204 206 189.7 4.8e-56 1 CL0072
Cotton_A_04900_CDS 50 100 49 100 PF00249.31 Myb_DNA-binding Domain 2 46 46 33.2 4.4e-08 1 CL0123
Cotton_A_04900_CDS 133 187 133 188 PF14379.6 Myb_CC_LHEQLE Family 1 46 48 62.0 3.1e-17 1 No_clan
Cotton_A_18041_CDS 25 172 18 175 PF04043.15 PMEI Domain 2 150 154 64.8 1.1e-17 1 No_clan
Cotton_A_15945_CDS 74 351 71 353 PF00069.25 Pkinase Domain 4 260 264 159.4 1.1e-46 1 CL0016
Cotton_A_08182_CDS 16 139 16 139 PF00241.20 Cofilin_ADF Domain 1 121 121 133.0 4.5e-39 1 CL0092
Cotton_A_22886_CDS 20 127 18 130 PF02466.19 Tim17 Family 4 108 111 52.4 5.9e-14 1 No_clan
Cotton_A_04507_CDS 1 237 1 238 PF01115.17 F_actin_cap_B Family 1 237 238 292.2 3.1e-87 1 No_clan
Cotton_A_34119_CDS 12 76 3 78 PF02798.20 GST_N Domain 10 74 76 63.4 1.9e-17 1 CL0172
Cotton_A_34119_CDS 122 206 110 206 PF00043.25 GST_C Domain 9 93 93 41.5 1.2e-10 1 CL0497
Cotton_A_16574_CDS 100 238 100 240 PF01764.25 Lipase_3 Family 1 140 142 127.3 3.8e-37 1 CL0028
Cotton_A_03086_CDS 55 300 54 301 PF00520.31 Ion_trans Family 2 244 245 128.5 2.4e-37 1 CL0030
Cotton_A_03086_CDS 516 608 516 608 PF12796.7 Ank_2 Repeat 1 83 83 56.2 3.9e-15 1 CL0465
Cotton_A_03086_CDS 616 690 611 703 PF12796.7 Ank_2 Repeat 4 68 83 42.4 8.1e-11 1 CL0465
Cotton_A_03086_CDS 787 849 786 849 PF11834.8 KHA Family 2 67 67 74.5 5.1e-21 1 No_clan
Cotton_A_17929_CDS 133 247 89 256 PF00083.24 Sugar_tr Family 45 161 452 41.8 6.1e-11 1 CL0015
Cotton_A_17929_CDS 305 454 259 472 PF07690.16 MFS_1 Family 23 171 353 36.6 2.4e-09 1 CL0015
Cotton_A_01919_CDS 160 348 147 358 PF04055.21 Radical_SAM Domain 9 158 167 64.9 1.1e-17 1 CL0036
Cotton_A_01919_CDS 366 444 365 446 PF16199.5 Radical_SAM_C Family 2 80 82 108.6 1.1e-31 1 No_clan
Cotton_A_01919_CDS 452 588 451 588 PF00583.25 Acetyltransf_1 Family 2 117 117 39.9 4.3e-10 1 CL0257
Cotton_A_13621_CDS 90 141 90 142 PF00847.20 AP2 Domain 1 53 54 55.6 4.6e-15 1 CL0081
Cotton_A_04825_CDS 56 374 56 376 PF00332.18 Glyco_hydro_17 Domain 1 311 313 326.4 2.2e-97 1 CL0058
Cotton_A_04825_CDS 412 480 412 482 PF07983.13 X8 Domain 1 72 76 73.2 2e-20 1 No_clan
Cotton_A_33223_CDS 17 178 17 179 PF00071.22 Ras Domain 1 161 162 183.5 2.1e-54 1 CL0023
Cotton_A_20141_CDS 26 338 25 338 PF00443.29 UCH Family 2 257 257 160.5 5.3e-47 1 CL0125
Cotton_A_01678_CDS 227 278 227 278 PF00249.31 Myb_DNA-binding Domain 1 46 46 33.8 2.8e-08 1 CL0123
Cotton_A_23054_CDS 1 59 1 59 PF01194.17 RNA_pol_N Domain 1 59 59 108.3 1.7e-31 1 No_clan
Cotton_A_20602_CDS 121 397 118 399 PF00069.25 Pkinase Domain 4 260 264 153.0 9.7e-45 1 CL0016
Cotton_A_01450_CDS 47 152 26 158 PF00293.28 NUDIX Domain 16 127 131 47.2 2.1e-12 1 CL0261
Cotton_A_17538_CDS 21 144 19 144 PF04852.12 DUF640 Family 3 126 126 219.2 1.3e-65 1 No_clan
Cotton_A_27064_CDS 180 227 179 228 PF13041.6 PPR_2 Repeat 2 49 50 33.2 4.4e-08 1 CL0020
Cotton_A_27064_CDS 257 284 257 284 PF01535.20 PPR Family 4 31 31 19.6 0.00077 1 CL0020
Cotton_A_27064_CDS 285 315 285 315 PF01535.20 PPR Family 1 31 31 20.1 0.00053 1 CL0020
Cotton_A_27064_CDS 357 383 356 386 PF01535.20 PPR Family 2 28 31 22.2 0.00011 1 CL0020
Cotton_A_26741_CDS 104 515 72 521 PF07779.12 Cas1_AcylT Domain 64 469 474 316.6 3.1e-94 1 CL0316
Cotton_A_20591_CDS 48 186 41 186 PF05753.14 TRAP_beta Family 4 143 178 159.8 4.3e-47 1 CL0159
Cotton_A_16448_CDS 83 371 46 371 PF05055.12 DUF677 Family 48 336 336 55.2 5.2e-15 1 CL0133
Cotton_A_08438_CDS 486 548 486 550 PF00076.22 RRM_1 Domain 1 68 70 29.7 4.2e-07 1 CL0221
Cotton_A_13670_CDS 64 214 64 214 PF00005.27 ABC_tran Domain 1 137 137 91.6 5.8e-26 1 CL0023
Cotton_A_05836_CDS 2 90 2 90 PF17832.1 Pre-PUA Domain 1 87 87 69.5 2.9e-19 1 CL0668
Cotton_A_05836_CDS 521 598 520 598 PF01253.22 SUI1 Domain 3 77 77 89.9 1.1e-25 1 No_clan
Cotton_A_07610_CDS 51 212 45 222 PF01425.21 Amidase Family 41 200 451 151.5 3.6e-44 1 No_clan
Cotton_A_07610_CDS 349 441 299 441 PF01425.21 Amidase Family 353 451 451 26.8 2.4e-06 1 No_clan
Cotton_A_38339_CDS 100 236 100 236 PF04116.13 FA_hydroxylase Family 1 133 133 87.2 1.2e-24 1 No_clan
Cotton_A_28494_CDS 90 174 90 175 PF08542.11 Rep_fac_C Domain 1 87 88 59.2 4.1e-16 1 CL0604
Cotton_A_25775_CDS 63 105 62 109 PF00646.33 F-box Domain 2 43 48 29.1 6.6e-07 1 CL0271
Cotton_A_25775_CDS 249 272 248 272 PF13516.6 LRR_6 Repeat 2 24 24 14.3 0.032 1 CL0022
Cotton_A_25775_CDS 274 297 274 298 PF13516.6 LRR_6 Repeat 1 23 24 11.1 0.34 1 CL0022
Cotton_A_25775_CDS 381 404 380 404 PF13516.6 LRR_6 Repeat 2 24 24 9.8 0.88 1 CL0022
Cotton_A_25775_CDS 543 562 543 563 PF13516.6 LRR_6 Repeat 4 23 24 9.6 1 1 CL0022
Cotton_A_25775_CDS 565 588 565 588 PF13516.6 LRR_6 Repeat 1 24 24 18.4 0.0015 1 CL0022
Cotton_A_38498_CDS 47 89 47 90 PF01476.20 LysM Domain 1 43 44 22.7 7.5e-05 1 CL0187
Cotton_A_27216_CDS 45 79 41 79 PF00400.32 WD40 Repeat 5 38 38 21.5 0.00031 1 CL0186
Cotton_A_27216_CDS 84 121 83 121 PF00400.32 WD40 Repeat 2 38 38 33.9 3.8e-08 1 CL0186
Cotton_A_27216_CDS 126 163 125 163 PF00400.32 WD40 Repeat 2 38 38 31.8 1.7e-07 1 CL0186
Cotton_A_27216_CDS 198 231 195 232 PF00400.32 WD40 Repeat 5 37 38 20.8 0.00051 1 CL0186
Cotton_A_27216_CDS 241 276 238 276 PF00400.32 WD40 Repeat 4 38 38 23.1 9.5e-05 1 CL0186
Cotton_A_27216_CDS 341 767 337 768 PF04053.14 Coatomer_WDAD Family 5 444 445 437.2 7.9e-131 1 CL0186
Cotton_A_27216_CDS 814 1213 814 1214 PF06957.11 COPI_C Family 1 399 403 563.2 2.7e-169 1 CL0020
Cotton_A_28426_CDS 12 47 11 56 PF02892.15 zf-BED Domain 2 39 44 27.1 3.1e-06 1 CL0361
Cotton_A_28426_CDS 186 337 186 337 PF04937.15 DUF659 Family 1 152 152 185.8 4.3e-55 1 No_clan
Cotton_A_28426_CDS 561 624 549 625 PF05699.14 Dimer_Tnp_hAT Domain 22 85 86 37.3 1.7e-09 1 No_clan
Cotton_A_30984_CDS 38 198 38 198 PF01554.18 MatE Family 1 161 161 80.4 1.1e-22 1 CL0222
Cotton_A_30984_CDS 259 419 257 420 PF01554.18 MatE Family 3 160 161 74.7 6.2e-21 1 CL0222
Cotton_A_16626_CDS 36 485 36 493 PF00067.22 p450 Domain 1 454 463 330.5 1.5e-98 1 No_clan
Cotton_A_31154_CDS 14 285 14 289 PF00069.25 Pkinase Domain 1 258 264 185.2 1.5e-54 1 CL0016
Cotton_A_28148_CDS 89 429 86 441 PF00520.31 Ion_trans Family 4 233 245 32.0 6.9e-08 1 CL0030
Cotton_A_28148_CDS 533 620 530 625 PF00027.29 cNMP_binding Domain 4 83 89 31.0 1.9e-07 1 CL0029
Cotton_A_10265_CDS 4 42 3 44 PF00646.33 F-box Domain 8 46 48 24.4 1.9e-05 1 CL0271
Cotton_A_14035_CDS 11 138 11 139 PF12165.8 Alfin Family 1 126 127 230.3 3.7e-69 1 No_clan
Cotton_A_14035_CDS 199 247 198 248 PF00628.29 PHD Domain 2 51 52 41.5 8.8e-11 1 CL0390
Cotton_A_36062_CDS 24 57 8 59 PF00828.19 Ribosomal_L27A Family 93 126 128 25.3 2e-05 1 CL0588
Cotton_A_25980_CDS 10 118 10 118 PF00255.19 GSHPx Family 1 108 108 142.6 2.9e-42 1 CL0172
Cotton_A_17481_CDS 13 142 13 144 PF01419.17 Jacalin Domain 1 131 133 107.6 4.4e-31 1 CL0568
Cotton_A_19211_CDS 52 384 50 384 PF16113.5 ECH_2 Domain 3 334 334 357.2 1.1e-106 1 CL0127
Cotton_A_02192_CDS 35 83 34 85 PF00249.31 Myb_DNA-binding Domain 2 44 46 28.3 1.5e-06 1 CL0123
Cotton_A_02192_CDS 121 160 120 160 PF14379.6 Myb_CC_LHEQLE Family 9 48 48 77.2 5.6e-22 1 No_clan
Cotton_A_23098_CDS 15 62 15 62 PF00249.31 Myb_DNA-binding Domain 1 46 46 57.9 8.2e-16 1 CL0123
Cotton_A_23098_CDS 68 111 68 113 PF00249.31 Myb_DNA-binding Domain 1 44 46 55.5 4.8e-15 1 CL0123
Cotton_A_16636_CDS 165 591 148 595 PF01457.16 Peptidase_M8 Family 96 525 529 282.2 8.1e-84 1 CL0126
Cotton_A_16636_CDS 631 658 631 658 PF07974.13 EGF_2 Domain 1 32 32 25.0 1.8e-05 1 CL0001
Cotton_A_29278_CDS 5 108 1 115 PF00892.20 EamA Family 11 112 137 43.5 3.4e-11 1 CL0184
Cotton_A_29278_CDS 124 260 121 261 PF00892.20 EamA Family 4 136 137 40.2 3.5e-10 1 CL0184
Cotton_A_32940_CDS 28 91 28 93 PF13456.6 RVT_3 Domain 1 64 124 38.9 6.3e-10 1 CL0219
Cotton_A_38681_CDS 33 282 31 282 PF00069.25 Pkinase Domain 3 264 264 248.3 7.9e-74 1 CL0016
Cotton_A_14328_CDS 71 492 71 492 PF03140.15 DUF247 Family 1 397 397 289.9 3.5e-86 1 No_clan
Cotton_A_13953_CDS 976 1105 976 1107 PF00004.29 AAA Domain 1 130 132 125.6 1.6e-36 1 CL0023
Cotton_A_13953_CDS 1129 1165 1129 1198 PF17862.1 AAA_lid_3 Domain 1 37 45 42.9 3e-11 1 CL0671
Cotton_A_04345_CDS 19 95 5 97 PF16884.5 ADH_N_2 Family 32 106 108 70.3 1.1e-19 1 CL0296
Cotton_A_04345_CDS 142 275 142 276 PF00107.26 ADH_zinc_N Family 1 128 130 85.4 3.2e-24 1 CL0063
Cotton_A_22802_CDS 37 413 32 433 PF16134.5 THOC2_N Family 36 435 630 169.5 1.2e-49 1 No_clan
Cotton_A_22802_CDS 433 590 426 590 PF16134.5 THOC2_N Family 496 630 630 84.0 9.5e-24 1 No_clan
Cotton_A_22802_CDS 592 667 592 667 PF11732.8 Thoc2 Family 1 76 76 103.1 6e-30 1 No_clan
Cotton_A_22802_CDS 936 1230 936 1231 PF11262.8 Tho2 Family 1 300 301 322.6 2.2e-96 1 No_clan
Cotton_A_12202_CDS 136 391 133 393 PF00494.19 SQS_PSY Domain 4 261 263 249.4 4.1e-74 1 CL0613
Cotton_A_04550_CDS 40 156 39 156 PF14770.6 TMEM18 Family 2 118 118 152.3 4.9e-45 1 No_clan
Cotton_A_05842_CDS 12 127 12 128 PF13334.6 DUF4094 Family 1 87 88 78.1 5.1e-22 1 No_clan
Cotton_A_05842_CDS 164 361 164 362 PF01762.21 Galactosyl_T Family 1 194 195 161.8 1.6e-47 1 CL0110
Cotton_A_13708_CDS 42 292 38 296 PF00067.22 p450 Domain 5 245 463 87.5 7.7e-25 1 No_clan
Cotton_A_13708_CDS 297 423 293 441 PF00067.22 p450 Domain 316 441 463 151.2 3.7e-44 1 No_clan
Cotton_A_14697_CDS 47 361 33 365 PF00520.31 Ion_trans Family 16 234 245 38.6 6.9e-10 1 CL0030
Cotton_A_14697_CDS 463 551 461 556 PF00027.29 cNMP_binding Domain 3 83 89 27.9 1.8e-06 1 CL0029
Cotton_A_26471_CDS 106 179 96 196 PF06325.13 PrmA Family 161 233 296 48.2 9.2e-13 1 CL0063
Cotton_A_01638_CDS 35 292 3 299 PF05055.12 DUF677 Family 58 323 336 144.5 3.5e-42 1 CL0133
Cotton_A_37026_CDS 60 89 59 89 PF01535.20 PPR Family 2 31 31 18.2 0.0021 1 CL0020
Cotton_A_37026_CDS 97 123 94 124 PF01535.20 PPR Family 4 30 31 20.9 0.00028 1 CL0020
Cotton_A_37026_CDS 126 153 125 155 PF01535.20 PPR Family 2 29 31 38.7 5.9e-10 1 CL0020
Cotton_A_37026_CDS 156 179 156 180 PF01535.20 PPR Family 1 24 31 24.4 2.2e-05 1 CL0020
Cotton_A_07441_CDS 4 80 1 81 PF05691.12 Raffinose_syn Family 676 749 750 55.6 2.2e-15 1 CL0058
Cotton_A_33382_CDS 56 157 54 157 PF01386.19 Ribosomal_L25p Domain 3 81 81 37.2 3.1e-09 1 No_clan
Cotton_A_33382_CDS 167 248 166 250 PF14693.6 Ribosomal_TL5_C Domain 3 84 86 70.8 9.3e-20 1 No_clan
Cotton_A_17552_CDS 24 82 24 82 PF06972.11 DUF1296 Family 1 60 60 115.1 1.1e-33 1 CL0214
Cotton_A_31383_CDS 29 95 28 95 PF00498.26 FHA Family 2 69 69 51.9 7.2e-14 1 CL0357
Cotton_A_09944_CDS 30 489 30 491 PF00067.22 p450 Domain 1 461 463 346.3 2.5e-103 1 No_clan
Cotton_A_12685_CDS 15 293 15 297 PF01073.19 3Beta_HSD Family 1 276 280 294.9 4.5e-88 1 CL0063
Cotton_A_12685_CDS 389 473 387 473 PF14934.6 DUF4499 Family 3 90 90 90.2 8.1e-26 1 No_clan
Cotton_A_10338_CDS 119 162 118 162 PF13639.6 zf-RING_2 Domain 2 44 44 48.8 6.6e-13 1 CL0229
Cotton_A_29764_CDS 1 108 1 118 PF00305.19 Lipoxygenase Domain 200 308 674 157.9 3.6e-46 1 No_clan
Cotton_A_29764_CDS 116 195 110 195 PF00305.19 Lipoxygenase Domain 595 674 674 73.8 9.9e-21 1 No_clan
Cotton_A_27163_CDS 132 186 132 186 PF14416.6 PMR5N Domain 1 53 53 71.2 6.6e-20 1 No_clan
Cotton_A_27163_CDS 187 454 187 455 PF13839.6 PC-Esterase Family 1 282 283 277.2 1.9e-82 1 CL0264
Cotton_A_06236_CDS 10 145 9 147 PF10914.8 DUF2781 Family 2 145 147 97.6 8.4e-28 1 No_clan
Cotton_A_11269_CDS 1 459 1 494 PF05097.12 DUF688 Family 1 439 446 217.8 3e-64 1 No_clan
Cotton_A_23083_CDS 9 298 8 299 PF06027.12 SLC35F Family 2 298 299 441.7 1.5e-132 1 CL0184
Cotton_A_21059_CDS 1 101 1 102 PF09187.10 RdDM_RDM1 Domain 12 98 119 64.0 1.3e-17 1 No_clan
Cotton_A_18967_CDS 34 52 34 52 PF08137.12 DVL Family 1 19 19 43.0 2.8e-11 1 No_clan
Cotton_A_15750_CDS 30 310 26 311 PF01031.20 Dynamin_M Family 5 284 285 175.7 1.2e-51 1 No_clan
Cotton_A_15750_CDS 356 443 354 444 PF02212.18 GED Family 5 91 92 39.4 4.9e-10 1 No_clan
Cotton_A_11211_CDS 118 514 118 514 PF03372.23 Exo_endo_phos Domain 1 233 233 48.2 9.2e-13 1 CL0530
Cotton_A_14027_CDS 95 241 93 256 PF00069.25 Pkinase Domain 3 148 264 146.4 1e-42 1 CL0016
Cotton_A_14027_CDS 289 397 283 397 PF00069.25 Pkinase Domain 149 264 264 74.6 7.8e-21 1 CL0016
Cotton_A_14027_CDS 416 461 416 461 PF00433.24 Pkinase_C Family 1 46 46 22.6 0.00013 1 No_clan
Cotton_A_26004_CDS 14 38 13 39 PF00642.24 zf-CCCH Family 2 26 27 30.2 2.9e-07 1 CL0537
Cotton_A_26004_CDS 83 139 82 140 PF00076.22 RRM_1 Domain 13 69 70 30.9 1.7e-07 1 CL0221
Cotton_A_26004_CDS 150 174 149 174 PF00642.24 zf-CCCH Family 2 27 27 22.3 8.9e-05 1 CL0537
Cotton_A_18381_CDS 44 93 43 94 PF00847.20 AP2 Domain 2 53 54 46.4 3.5e-12 1 CL0081
Cotton_A_36881_CDS 95 182 93 184 PF00153.27 Mito_carr Family 5 95 97 80.9 4.7e-23 1 No_clan
Cotton_A_36881_CDS 191 291 188 295 PF00153.27 Mito_carr Family 5 93 97 74.0 6.9e-21 1 No_clan
Cotton_A_36881_CDS 297 391 295 394 PF00153.27 Mito_carr Family 3 93 97 65.8 2.4e-18 1 No_clan
Cotton_A_11540_CDS 78 182 78 183 PF01903.17 CbiX Domain 1 106 107 97.9 4e-28 1 CL0043
Cotton_A_27518_CDS 540 597 540 597 PF03106.15 WRKY Domain 1 59 59 73.0 1.7e-20 1 CL0274
Cotton_A_27518_CDS 733 793 733 793 PF03106.15 WRKY Domain 1 59 59 79.8 1.3e-22 1 CL0274
Cotton_A_27518_CDS 911 1052 897 1053 PF07887.11 Calmodulin_bind Family 148 291 292 171.5 2.5e-50 1 No_clan
Cotton_A_01214_CDS 31 153 31 185 PF07651.16 ANTH Domain 1 121 277 145.3 1.8e-42 1 CL0009
Cotton_A_01214_CDS 211 367 188 367 PF07651.16 ANTH Domain 115 277 277 138.2 2.5e-40 1 CL0009
Cotton_A_24583_CDS 1 88 1 94 PF03140.15 DUF247 Family 92 181 397 46.0 4.3e-12 1 No_clan
Cotton_A_09068_CDS 147 393 145 401 PF00487.24 FA_desaturase Domain 3 246 254 101.1 8.7e-29 1 No_clan
Cotton_A_10155_CDS 20 259 20 259 PF13561.6 adh_short_C2 Domain 1 234 234 211.1 1.7e-62 1 CL0063
Cotton_A_17152_CDS 10 99 9 134 PF18052.1 Rx_N Domain 2 91 93 80.4 9.1e-23 1 No_clan
Cotton_A_17152_CDS 172 423 172 424 PF00931.22 NB-ARC Domain 1 251 252 159.0 1.2e-46 1 CL0023
Cotton_A_14220_CDS 652 855 650 857 PF00924.18 MS_channel Family 3 204 206 82.3 3.3e-23 1 No_clan
Cotton_A_32848_CDS 34 71 31 71 PF08263.12 LRRNT_2 Family 4 41 41 42.8 4.9e-11 1 No_clan
Cotton_A_32848_CDS 122 182 122 182 PF13855.6 LRR_8 Repeat 1 61 61 37.8 1.2e-09 1 CL0022
Cotton_A_32848_CDS 305 571 304 573 PF00069.25 Pkinase Domain 2 260 264 151.6 2.5e-44 1 CL0016
Cotton_A_25115_CDS 22 150 22 151 PF02365.15 NAM Family 1 125 126 113.3 1.4e-32 1 No_clan
Cotton_A_03856_CDS 450 488 449 489 PF00514.23 Arm Repeat 2 40 41 21.6 0.00016 1 CL0020
Cotton_A_24644_CDS 35 226 33 272 PF07651.16 ANTH Domain 3 195 277 78.9 3e-22 1 CL0009
Cotton_A_20992_CDS 103 162 102 162 PF13855.6 LRR_8 Repeat 2 61 61 35.3 7.3e-09 1 CL0022
Cotton_A_20992_CDS 176 192 175 219 PF00560.33 LRR_1 Repeat 2 18 23 10.8 0.63 1 CL0022
Cotton_A_20992_CDS 196 256 195 256 PF13855.6 LRR_8 Repeat 2 61 61 27.5 1.9e-06 1 CL0022
Cotton_A_08635_CDS 75 297 75 298 PF07859.13 Abhydrolase_3 Domain 1 210 211 164.0 4.1e-48 1 CL0028
Cotton_A_10833_CDS 66 111 64 124 PF00170.21 bZIP_1 Family 5 50 64 34.6 1.5e-08 1 CL0018
Cotton_A_09923_CDS 128 242 122 244 PF01529.20 DHHC Family 7 132 134 116.8 6.9e-34 1 No_clan
Cotton_A_32068_CDS 26 77 25 78 PF13833.6 EF-hand_8 Domain 2 54 55 63.9 9.1e-18 1 CL0220
Cotton_A_19482_CDS 39 323 20 325 PF00225.23 Kinesin Domain 37 296 333 278.2 7.5e-83 1 CL0023
Cotton_A_19482_CDS 349 387 345 387 PF00225.23 Kinesin Domain 295 333 333 45.4 5e-12 1 CL0023
Cotton_A_27659_CDS 178 200 178 201 PF01535.20 PPR Family 5 27 31 13.3 0.078 1 CL0020
Cotton_A_27659_CDS 202 249 202 250 PF13041.6 PPR_2 Repeat 1 48 50 40.8 1.9e-10 1 CL0020
Cotton_A_27659_CDS 278 301 276 304 PF01535.20 PPR Family 4 27 31 17.3 0.004 1 CL0020
Cotton_A_27659_CDS 304 350 303 352 PF13041.6 PPR_2 Repeat 2 48 50 37.3 2.2e-09 1 CL0020
Cotton_A_27659_CDS 379 402 377 405 PF01535.20 PPR Family 3 26 31 13.9 0.048 1 CL0020
Cotton_A_20128_CDS 37 96 36 98 PF14008.6 Metallophos_C Domain 2 60 63 45.3 1.2e-11 1 No_clan
Cotton_A_05254_CDS 37 103 37 103 PF00076.22 RRM_1 Domain 1 70 70 47.7 1e-12 1 CL0221
Cotton_A_05254_CDS 115 185 115 185 PF00076.22 RRM_1 Domain 1 70 70 68.0 4.6e-19 1 CL0221
Cotton_A_05254_CDS 237 308 236 311 PF00076.22 RRM_1 Domain 2 67 70 21.8 0.00012 1 CL0221
Cotton_A_17132_CDS 3 97 3 97 PF14368.6 LTP_2 Family 1 97 97 61.9 4.5e-17 1 CL0482
Cotton_A_01427_CDS 10 44 7 45 PF00400.32 WD40 Repeat 5 37 38 15.1 0.033 1 CL0186
Cotton_A_01427_CDS 58 92 54 92 PF00400.32 WD40 Repeat 5 38 38 28.4 1.9e-06 1 CL0186
Cotton_A_01427_CDS 100 134 96 134 PF00400.32 WD40 Repeat 5 38 38 28.8 1.5e-06 1 CL0186
Cotton_A_01427_CDS 147 180 137 180 PF00400.32 WD40 Repeat 8 38 38 26.8 6.5e-06 1 CL0186
Cotton_A_01427_CDS 188 222 184 222 PF00400.32 WD40 Repeat 5 38 38 31.5 2.1e-07 1 CL0186
Cotton_A_01427_CDS 229 262 226 262 PF00400.32 WD40 Repeat 4 38 38 21.7 0.00027 1 CL0186
Cotton_A_01427_CDS 298 321 284 321 PF00400.32 WD40 Repeat 14 37 38 18.6 0.0025 1 CL0186
Cotton_A_21477_CDS 18 346 16 365 PF01112.18 Asparaginase_2 Domain 3 278 306 170.4 4.7e-50 1 CL0052
Cotton_A_01304_CDS 30 183 30 184 PF06521.11 PAR1 Family 1 155 156 252.9 8.5e-76 1 No_clan
Cotton_A_07171_CDS 106 272 101 274 PF00574.23 CLP_protease Domain 8 180 182 132.1 2.1e-38 1 CL0127
Cotton_A_39415_CDS 52 161 26 162 PF01161.20 PBP Domain 13 131 132 57.7 1.5e-15 1 No_clan
Cotton_A_10510_CDS 197 282 196 308 PF02338.19 OTU Family 2 92 127 42.4 9e-11 1 CL0125
Cotton_A_40299_CDS 244 282 244 282 PF03470.14 zf-XS Domain 1 43 43 39.4 5.2e-10 1 No_clan
Cotton_A_40299_CDS 315 380 315 383 PF03468.14 XS Domain 1 66 113 68.5 5.7e-19 1 CL0221
Cotton_A_21739_CDS 34 116 34 116 PF02298.17 Cu_bind_like Domain 1 84 84 81.4 3.4e-23 1 CL0026
Cotton_A_08634_CDS 30 141 29 142 PF01398.21 JAB Family 2 117 118 111.4 2.3e-32 1 CL0366
Cotton_A_08634_CDS 176 294 176 310 PF13012.6 MitMem_reg Family 1 83 112 50.7 2.1e-13 1 No_clan
Cotton_A_37702_CDS 1 175 1 175 PF14009.6 DUF4228 Family 1 179 179 106.6 1.9e-30 1 No_clan
Cotton_A_08265_CDS 167 273 165 274 PF08514.11 STAG Family 4 112 113 97.5 4.1e-28 1 No_clan
Cotton_A_20857_CDS 87 294 87 295 PF13460.6 NAD_binding_10 Domain 1 183 184 122.1 2.4e-35 1 CL0063
Cotton_A_22197_CDS 55 169 54 172 PF01412.18 ArfGap Domain 2 114 117 134.9 1.3e-39 1 No_clan
Cotton_A_22197_CDS 245 334 244 353 PF00168.30 C2 Domain 2 94 103 85.5 2.5e-24 1 CL0154
Cotton_A_05144_CDS 573 688 554 692 PF00078.27 RVT_1 Family 57 201 222 54.4 1.2e-14 1 CL0027
Cotton_A_18429_CDS 62 120 62 120 PF11250.8 FAF Family 1 54 54 79.2 2e-22 1 No_clan
Cotton_A_29859_CDS 94 261 89 261 PF01789.16 PsbP Domain 6 156 156 135.5 1.6e-39 1 CL0619
Cotton_A_03633_CDS 85 143 83 147 PF13499.6 EF-hand_7 Domain 3 67 71 30.3 4.4e-07 1 CL0220
Cotton_A_03633_CDS 184 269 182 272 PF00153.27 Mito_carr Family 3 94 97 81.1 4.1e-23 1 No_clan
Cotton_A_03633_CDS 279 366 277 370 PF00153.27 Mito_carr Family 3 92 97 77.7 4.6e-22 1 No_clan
Cotton_A_03633_CDS 378 466 375 468 PF00153.27 Mito_carr Family 4 93 97 85.1 2.4e-24 1 No_clan
Cotton_A_07068_CDS 84 370 83 371 PF05212.12 DUF707 Family 2 295 296 463.3 3.2e-139 1 No_clan
Cotton_A_33685_CDS 179 374 179 411 PF13632.6 Glyco_trans_2_3 Domain 1 181 197 71.3 9.6e-20 1 CL0110
Cotton_A_32747_CDS 4 76 3 77 PF00240.23 ubiquitin Domain 2 71 72 65.8 2.2e-18 1 CL0072
Cotton_A_32747_CDS 156 191 152 191 PF00627.31 UBA Domain 5 37 37 47.6 1.1e-12 1 CL0214
Cotton_A_32747_CDS 259 314 259 315 PF09280.11 XPC-binding Domain 1 56 57 83.9 4.8e-24 1 No_clan
Cotton_A_32747_CDS 340 375 339 375 PF00627.31 UBA Domain 2 37 37 47.2 1.5e-12 1 CL0214
Cotton_A_27565_CDS 246 289 242 293 PF00170.21 bZIP_1 Family 5 48 64 46.5 2.9e-12 1 CL0018
Cotton_A_11183_CDS 73 162 72 163 PF04576.15 Zein-binding Family 2 91 92 112.9 6.6e-33 1 No_clan
Cotton_A_16052_CDS 125 221 101 228 PF01245.20 Ribosomal_L19 Family 5 102 111 109.1 1.1e-31 1 CL0107
Cotton_A_36596_CDS 351 393 351 394 PF06203.14 CCT Motif 1 43 44 63.4 1.4e-17 1 CL0281
Cotton_A_33574_CDS 122 279 120 279 PF04678.13 MCU Family 3 176 176 161.8 1.7e-47 1 No_clan
Cotton_A_12876_CDS 12 104 11 111 PF00291.25 PALP Family 2 94 294 42.0 7.2e-11 1 CL0063
Cotton_A_12876_CDS 114 247 105 248 PF00291.25 PALP Family 148 293 294 77.5 1.2e-21 1 CL0063
Cotton_A_14312_CDS 65 110 63 111 PF00010.26 HLH Domain 4 52 53 41.6 8.8e-11 1 No_clan
Cotton_A_06221_CDS 81 130 79 135 PF00170.21 bZIP_1 Family 5 54 64 45.8 4.8e-12 1 CL0018
Cotton_A_13817_CDS 31 145 30 146 PF07732.15 Cu-oxidase_3 Domain 2 118 119 146.2 4e-43 1 CL0026
Cotton_A_13817_CDS 163 284 149 285 PF00394.22 Cu-oxidase Domain 35 158 159 111.7 3.5e-32 1 CL0026
Cotton_A_13817_CDS 395 527 394 529 PF07731.14 Cu-oxidase_2 Domain 2 135 137 139.8 4.6e-41 1 CL0026
Cotton_A_08686_CDS 52 86 51 97 PF00646.33 F-box Domain 2 37 48 31.6 1.1e-07 1 CL0271
Cotton_A_08686_CDS 141 165 141 165 PF13516.6 LRR_6 Repeat 1 24 24 12.0 0.17 1 CL0022
Cotton_A_13306_CDS 1 157 1 158 PF03094.15 Mlo Family 320 478 479 256.5 3.6e-76 1 No_clan
Cotton_A_29370_CDS 10 54 8 54 PF12937.7 F-box-like Domain 3 48 48 29.1 6.9e-07 1 CL0271
Cotton_A_29370_CDS 128 356 126 359 PF13621.6 Cupin_8 Domain 3 250 254 73.8 1.8e-20 1 CL0029
Cotton_A_07432_CDS 52 111 50 114 PF13499.6 EF-hand_7 Domain 3 68 71 36.2 6.2e-09 1 CL0220
Cotton_A_07432_CDS 141 217 141 218 PF13499.6 EF-hand_7 Domain 1 70 71 33.5 4.3e-08 1 CL0220
Cotton_A_14496_CDS 26 61 24 61 PF08263.12 LRRNT_2 Family 3 41 41 28.8 1.2e-06 1 No_clan
Cotton_A_14496_CDS 79 125 69 126 PF13855.6 LRR_8 Repeat 14 60 61 27.7 1.7e-06 1 CL0022
Cotton_A_14496_CDS 335 594 332 596 PF00069.25 Pkinase Domain 5 260 264 132.4 1.8e-38 1 CL0016
Cotton_A_07792_CDS 33 86 32 97 PF12708.7 Pectate_lyase_3 Family 2 58 215 38.5 1.1e-09 1 CL0268
Cotton_A_07792_CDS 88 381 59 389 PF00295.17 Glyco_hydro_28 Domain 29 309 325 80.3 1.3e-22 1 CL0268
Cotton_A_30610_CDS 60 114 59 115 PF04770.12 ZF-HD_dimer Family 2 54 55 99.8 7.6e-29 1 No_clan
Cotton_A_11148_CDS 106 336 106 390 PF00069.25 Pkinase Domain 1 212 264 49.9 2.8e-13 1 CL0016
Cotton_A_28862_CDS 111 263 102 264 PF00929.24 RNase_T Family 15 164 165 36.6 6.3e-09 1 CL0219
Cotton_A_32082_CDS 11 73 11 73 PF00226.31 DnaJ Domain 1 63 63 88.1 3.1e-25 1 CL0392
Cotton_A_08263_CDS 29 98 29 98 PF13418.6 Kelch_4 Repeat 1 49 49 27.8 1.9e-06 1 CL0186
Cotton_A_08263_CDS 99 147 99 153 PF13418.6 Kelch_4 Repeat 1 45 49 20.0 0.00052 1 CL0186
Cotton_A_08263_CDS 561 750 560 751 PF00149.28 Metallophos Domain 2 203 204 84.4 1.4e-23 1 CL0163
Cotton_A_34645_CDS 31 137 31 138 PF03859.16 CG-1 Domain 1 115 116 128.9 7.3e-38 1 No_clan
Cotton_A_34645_CDS 539 618 527 620 PF12796.7 Ank_2 Repeat 11 81 83 31.7 1.7e-07 1 CL0465
Cotton_A_34645_CDS 778 797 777 797 PF00612.27 IQ Motif 2 21 21 19.5 0.00056 1 CL0220
Cotton_A_34645_CDS 857 877 857 877 PF00612.27 IQ Motif 1 21 21 12.7 0.083 1 CL0220
Cotton_A_34533_CDS 91 500 72 500 PF00330.20 Aconitase Family 16 461 461 256.7 4.4e-76 1 No_clan
Cotton_A_36151_CDS 5 59 4 59 PF08766.11 DEK_C Domain 2 54 54 48.4 6.3e-13 1 No_clan
Cotton_A_36151_CDS 95 145 95 146 PF02229.16 PC4 Domain 1 51 52 82.6 1.1e-23 1 CL0609
Cotton_A_36417_CDS 6 153 6 154 PF00056.23 Ldh_1_N Family 1 140 141 116.1 1.3e-33 1 CL0063
Cotton_A_36417_CDS 157 327 157 330 PF02866.18 Ldh_1_C Domain 1 163 167 127.6 4.3e-37 1 CL0341
Cotton_A_08051_CDS 308 380 308 380 PF02201.18 SWIB Domain 1 74 74 76.4 1.1e-21 1 No_clan
Cotton_A_23902_CDS 65 115 65 115 PF04554.13 Extensin_2 Family 14 58 58 25.6 9.4e-06 1 No_clan
Cotton_A_23902_CDS 91 153 91 153 PF04554.13 Extensin_2 Family 1 58 58 29.3 6.6e-07 1 No_clan
Cotton_A_23902_CDS 145 197 145 197 PF04554.13 Extensin_2 Family 1 58 58 31.2 1.7e-07 1 No_clan
Cotton_A_23902_CDS 165 213 165 213 PF04554.13 Extensin_2 Family 14 58 58 24.2 2.6e-05 1 No_clan
Cotton_A_21070_CDS 247 469 246 472 PF00566.18 RabGAP-TBC Family 2 212 215 170.5 4e-50 1 No_clan
Cotton_A_08672_CDS 32 102 32 102 PF00076.22 RRM_1 Domain 1 70 70 64.6 5.2e-18 1 CL0221
Cotton_A_08672_CDS 120 188 120 189 PF00076.22 RRM_1 Domain 1 69 70 76.6 9.8e-22 1 CL0221
Cotton_A_08672_CDS 211 279 211 280 PF00076.22 RRM_1 Domain 1 69 70 85.3 1.8e-24 1 CL0221
Cotton_A_08672_CDS 314 382 314 383 PF00076.22 RRM_1 Domain 1 69 70 68.7 2.7e-19 1 CL0221
Cotton_A_08672_CDS 555 621 554 621 PF00658.18 PABP Family 2 68 68 93.3 7.8e-27 1 No_clan
Cotton_A_37136_CDS 6 78 6 87 PF09177.11 Syntaxin-6_N Domain 1 75 99 49.4 5e-13 1 No_clan
Cotton_A_20253_CDS 47 189 46 191 PF00293.28 NUDIX Domain 2 129 131 91.7 3.6e-26 1 CL0261
Cotton_A_00736_CDS 31 98 31 98 PF00421.19 PSII Family 1 72 507 104.2 7e-30 1 No_clan
Cotton_A_04011_CDS 5 141 5 142 PF00179.26 UQ_con Domain 1 139 140 181.4 6.6e-54 1 CL0208
Cotton_A_28435_CDS 97 155 95 155 PF13855.6 LRR_8 Repeat 3 61 61 37.2 1.8e-09 1 CL0022
Cotton_A_28435_CDS 192 208 192 217 PF00560.33 LRR_1 Repeat 1 17 23 9.8 1.3 1 CL0022
Cotton_A_02931_CDS 159 205 159 208 PF13812.6 PPR_3 Repeat 1 47 63 16.9 0.0049 1 CL0020
Cotton_A_02931_CDS 211 236 210 239 PF01535.20 PPR Family 3 28 31 15.0 0.022 1 CL0020
Cotton_A_02931_CDS 241 285 241 286 PF13041.6 PPR_2 Repeat 1 45 50 52.7 3.6e-14 1 CL0020
Cotton_A_02931_CDS 309 339 308 341 PF12854.7 PPR_1 Repeat 2 32 34 27.3 2.1e-06 1 CL0020
Cotton_A_02931_CDS 343 375 343 376 PF12854.7 PPR_1 Repeat 1 33 34 25.9 5.9e-06 1 CL0020
Cotton_A_02931_CDS 382 431 382 431 PF13041.6 PPR_2 Repeat 1 50 50 63.0 2.1e-17 1 CL0020
Cotton_A_02931_CDS 452 489 452 490 PF13041.6 PPR_2 Repeat 1 38 50 31.2 1.9e-07 1 CL0020
Cotton_A_02931_CDS 518 550 518 551 PF12854.7 PPR_1 Repeat 1 33 34 36.6 2.6e-09 1 CL0020
Cotton_A_02931_CDS 557 606 557 606 PF13041.6 PPR_2 Repeat 1 50 50 53.1 2.6e-14 1 CL0020
Cotton_A_02931_CDS 629 652 628 655 PF01535.20 PPR Family 2 25 31 9.4 1.3 1 CL0020
Cotton_A_01213_CDS 45 182 1 187 PF02309.16 AUX_IAA Family 46 163 237 94.6 8.2e-27 1 CL0072
Cotton_A_01213_CDS 187 224 182 226 PF02309.16 AUX_IAA Family 190 227 237 49.3 5.8e-13 1 CL0072
Cotton_A_19876_CDS 1 154 1 154 PF00407.19 Bet_v_1 Domain 1 151 151 75.9 3.1e-21 1 CL0209
Cotton_A_02759_CDS 79 218 79 220 PF00685.27 Sulfotransfer_1 Domain 1 154 267 97.5 8.7e-28 1 CL0023
Cotton_A_19752_CDS 5 43 2 47 PF00643.24 zf-B_box Domain 6 38 42 30.1 4e-07 1 No_clan
Cotton_A_19752_CDS 56 96 53 100 PF00643.24 zf-B_box Domain 4 38 42 33.1 4.5e-08 1 No_clan
Cotton_A_21920_CDS 45 305 45 305 PF04080.13 Per1 Family 1 255 255 302.6 2.6e-90 1 CL0192
Cotton_A_10343_CDS 6 90 5 90 PF03871.14 RNA_pol_Rpb5_N Domain 2 89 89 111.3 2.4e-32 1 CL0236
Cotton_A_10343_CDS 133 204 133 205 PF01191.19 RNA_pol_Rpb5_C Domain 1 72 73 115.5 7.3e-34 1 No_clan
Cotton_A_26315_CDS 89 130 88 130 PF03107.16 C1_2 Domain 2 47 47 33.9 2.9e-08 1 CL0006
Cotton_A_26315_CDS 149 198 148 198 PF03107.16 C1_2 Domain 2 47 47 27.1 3.9e-06 1 CL0006
Cotton_A_26315_CDS 326 368 326 369 PF03107.16 C1_2 Domain 1 46 47 31.4 1.7e-07 1 CL0006
Cotton_A_26315_CDS 387 431 386 431 PF03107.16 C1_2 Domain 3 47 47 32.8 6.6e-08 1 CL0006
Cotton_A_26315_CDS 442 493 442 493 PF03107.16 C1_2 Domain 1 47 47 33.9 2.8e-08 1 CL0006
Cotton_A_26315_CDS 560 619 559 619 PF03107.16 C1_2 Domain 2 47 47 28.9 1.1e-06 1 CL0006
Cotton_A_17993_CDS 151 373 150 375 PF03942.15 DTW Domain 2 196 198 151.7 2e-44 1 No_clan
Cotton_A_00282_CDS 56 114 56 117 PF13812.6 PPR_3 Repeat 1 59 63 16.4 0.0072 1 CL0020
Cotton_A_00282_CDS 143 172 142 172 PF01535.20 PPR Family 2 31 31 10.3 0.69 1 CL0020
Cotton_A_00282_CDS 219 244 216 244 PF01535.20 PPR Family 6 31 31 14.0 0.045 1 CL0020
Cotton_A_00282_CDS 246 295 246 295 PF13041.6 PPR_2 Repeat 1 50 50 36.6 3.9e-09 1 CL0020
Cotton_A_00282_CDS 316 364 316 365 PF13041.6 PPR_2 Repeat 1 49 50 48.2 9.2e-13 1 CL0020
Cotton_A_00282_CDS 394 418 390 419 PF01535.20 PPR Family 6 30 31 13.4 0.069 1 CL0020
Cotton_A_06675_CDS 79 336 76 336 PF00069.25 Pkinase Domain 4 264 264 229.4 4.9e-68 1 CL0016
Cotton_A_25868_CDS 292 541 285 553 PF00118.24 Cpn60_TCP1 Family 135 374 491 118.2 3.7e-34 1 No_clan
Cotton_A_25868_CDS 1381 1548 1373 1551 PF01504.18 PIP5K Family 10 169 274 118.6 2.9e-34 1 CL0016
Cotton_A_25868_CDS 1550 1603 1544 1604 PF01504.18 PIP5K Family 224 273 274 27.7 1.5e-06 1 CL0016
Cotton_A_08806_CDS 23 276 18 280 PF13347.6 MFS_2 Family 6 239 427 59.1 2.9e-16 1 CL0015
Cotton_A_31223_CDS 1 107 1 107 PF03870.15 RNA_pol_Rpb8 Family 31 139 139 126.9 6.1e-37 1 CL0021
Cotton_A_14325_CDS 84 181 83 182 PF12922.7 Cnd1_N Domain 2 98 166 52.2 6e-14 1 No_clan
Cotton_A_03182_CDS 36 350 36 350 PF00225.23 Kinesin Domain 1 333 333 335.6 2.6e-100 1 CL0023
Cotton_A_03182_CDS 765 927 764 929 PF11995.8 DUF3490 Family 2 159 161 224.3 6.6e-67 1 No_clan
Cotton_A_22181_CDS 25 117 25 119 PF12776.7 Myb_DNA-bind_3 Domain 1 94 96 89.3 2.5e-25 1 CL0123
Cotton_A_07425_CDS 91 117 89 118 PF01535.20 PPR Family 4 30 31 16.6 0.0067 1 CL0020
Cotton_A_07425_CDS 119 149 119 149 PF01535.20 PPR Family 1 31 31 25.3 1.1e-05 1 CL0020
Cotton_A_07425_CDS 219 266 219 267 PF13041.6 PPR_2 Repeat 1 48 50 37.6 1.8e-09 1 CL0020
Cotton_A_07425_CDS 295 318 288 318 PF12854.7 PPR_1 Repeat 11 34 34 26.4 4.2e-06 1 CL0020
Cotton_A_07425_CDS 321 367 320 369 PF13041.6 PPR_2 Repeat 2 48 50 34.9 1.3e-08 1 CL0020
Cotton_A_07425_CDS 396 420 393 423 PF01535.20 PPR Family 4 28 31 9.5 1.2 1 CL0020
Cotton_A_07425_CDS 422 465 421 469 PF13041.6 PPR_2 Repeat 2 45 50 44.6 1.2e-11 1 CL0020
Cotton_A_07425_CDS 497 524 494 524 PF01535.20 PPR Family 4 31 31 23.4 4.6e-05 1 CL0020
Cotton_A_07425_CDS 598 618 595 619 PF01535.20 PPR Family 4 24 31 12.2 0.17 1 CL0020
Cotton_A_07425_CDS 624 671 623 672 PF13041.6 PPR_2 Repeat 2 49 50 43.6 2.6e-11 1 CL0020
Cotton_A_06550_CDS 35 482 35 494 PF00067.22 p450 Domain 1 451 463 318.3 7.9e-95 1 No_clan
Cotton_A_32571_CDS 49 192 49 194 PF13874.6 Nup54 Domain 1 137 140 104.2 5.9e-30 1 No_clan
Cotton_A_15071_CDS 30 109 30 114 PF08700.11 Vps51 Family 1 81 87 50.1 2.1e-13 1 CL0295
Cotton_A_15071_CDS 147 356 147 358 PF16528.5 Exo84_C Domain 1 203 205 65.9 4.2e-18 1 CL0295
Cotton_A_12818_CDS 31 338 30 342 PF00657.22 Lipase_GDSL Family 2 196 200 52.1 7.7e-14 1 CL0264
Cotton_A_30094_CDS 4 256 4 257 PF00069.25 Pkinase Domain 1 263 264 216.2 5.1e-64 1 CL0016
Cotton_A_14263_CDS 45 111 42 112 PF02201.18 SWIB Domain 4 70 74 85.5 1.7e-24 1 No_clan
Cotton_A_14263_CDS 107 247 106 251 PF01217.20 Clat_adaptor_s Domain 2 138 142 78.8 3.8e-22 1 CL0212
Cotton_A_13365_CDS 102 123 102 123 PF12874.7 zf-met Domain 4 25 25 14.8 0.029 1 CL0361
Cotton_A_13365_CDS 193 216 192 216 PF12874.7 zf-met Domain 2 25 25 22.4 0.00012 1 CL0361
Cotton_A_09792_CDS 71 129 69 129 PF13855.6 LRR_8 Repeat 3 61 61 29.2 5.7e-07 1 CL0022
Cotton_A_07039_CDS 23 62 22 62 PF08263.12 LRRNT_2 Family 2 41 41 45.8 5.6e-12 1 No_clan
Cotton_A_07039_CDS 90 149 89 149 PF13855.6 LRR_8 Repeat 2 61 61 30.6 2.1e-07 1 CL0022
Cotton_A_15356_CDS 178 216 175 223 PF00170.21 bZIP_1 Family 5 43 64 32.9 5.2e-08 1 CL0018
Cotton_A_15356_CDS 250 322 249 322 PF14144.6 DOG1 Family 2 74 77 102.5 1e-29 1 No_clan
Cotton_A_00111_CDS 201 323 200 332 PF01170.18 UPF0020 Domain 3 141 197 45.3 7.7e-12 1 CL0063
Cotton_A_07006_CDS 4 288 4 288 PF09743.9 E3_UFM1_ligase Family 1 272 272 332.3 2.5e-99 1 No_clan
Cotton_A_15131_CDS 50 88 48 88 PF08263.12 LRRNT_2 Family 3 41 41 24.5 2.4e-05 1 No_clan
Cotton_A_15131_CDS 262 322 262 322 PF13855.6 LRR_8 Repeat 1 61 61 27.4 2.1e-06 1 CL0022
Cotton_A_15131_CDS 407 466 406 466 PF13855.6 LRR_8 Repeat 2 61 61 40.7 1.5e-10 1 CL0022
Cotton_A_15131_CDS 579 840 574 842 PF00069.25 Pkinase Domain 6 260 264 171.5 2.2e-50 1 CL0016
Cotton_A_10161_CDS 23 262 23 263 PF13561.6 adh_short_C2 Domain 1 233 234 203.2 4.2e-60 1 CL0063
Cotton_A_07505_CDS 83 198 78 200 PF00153.27 Mito_carr Family 6 94 97 66.4 1.6e-18 1 No_clan
Cotton_A_07505_CDS 213 297 208 298 PF00153.27 Mito_carr Family 7 96 97 57.8 7.7e-16 1 No_clan
Cotton_A_32778_CDS 17 155 13 156 PF00892.20 EamA Family 6 136 137 39.5 5.9e-10 1 CL0184
Cotton_A_32778_CDS 183 322 182 323 PF00892.20 EamA Family 2 136 137 53.2 3.4e-14 1 CL0184
Cotton_A_32616_CDS 58 112 58 112 PF17284.2 Spermine_synt_N Domain 1 53 53 86.3 9.5e-25 1 No_clan
Cotton_A_32616_CDS 115 302 115 303 PF01564.17 Spermine_synth Domain 1 187 188 253.2 1.1e-75 1 CL0063
Cotton_A_19746_CDS 62 153 62 153 PF16656.5 Pur_ac_phosph_N Domain 1 94 94 64.4 1.1e-17 1 CL0159
Cotton_A_19746_CDS 164 362 163 362 PF00149.28 Metallophos Domain 2 204 204 97.5 1.5e-27 1 CL0163
Cotton_A_19746_CDS 388 447 388 449 PF14008.6 Metallophos_C Domain 1 59 63 65.4 6.4e-18 1 No_clan
Cotton_A_17770_CDS 58 212 57 213 PF02453.17 Reticulon Family 2 156 157 179.2 5.2e-53 1 CL0484
Cotton_A_25802_CDS 92 145 90 146 PF00046.29 Homeodomain Domain 3 56 57 60.4 1.1e-16 1 CL0123
Cotton_A_25802_CDS 147 188 147 189 PF02183.18 HALZ Coiled-coil 1 42 43 55.4 5.3e-15 1 No_clan
Cotton_A_09530_CDS 90 173 90 191 PF00355.26 Rieske Domain 1 83 89 70.1 1.2e-19 1 CL0516
Cotton_A_09530_CDS 299 393 299 397 PF08417.12 PaO Family 1 84 88 73.7 9.8e-21 1 No_clan
Cotton_A_39654_CDS 85 190 83 193 PF00651.31 BTB Domain 3 108 111 33.5 3.8e-08 1 CL0033
Cotton_A_39654_CDS 278 362 276 362 PF02135.16 zf-TAZ Family 3 75 75 53.9 1.9e-14 1 No_clan
Cotton_A_33515_CDS 61 514 61 522 PF00067.22 p450 Domain 1 455 463 351.0 9.3e-105 1 No_clan
Cotton_A_39358_CDS 26 59 24 60 PF08263.12 LRRNT_2 Family 4 40 41 32.9 5.7e-08 1 No_clan
Cotton_A_39358_CDS 375 635 372 638 PF00069.25 Pkinase Domain 4 259 264 130.6 6.5e-38 1 CL0016
Cotton_A_29574_CDS 72 175 70 179 PF03652.15 RuvX Family 3 107 135 64.8 9.9e-18 1 CL0580
Cotton_A_05372_CDS 83 181 80 183 PF00085.20 Thioredoxin Domain 4 101 103 49.1 4.4e-13 1 CL0172
Cotton_A_05372_CDS 213 395 213 397 PF13848.6 Thioredoxin_6 Domain 1 182 184 53.9 2.1e-14 1 CL0172
Cotton_A_05372_CDS 420 522 419 523 PF00085.20 Thioredoxin Domain 2 102 103 52.1 5.2e-14 1 CL0172
Cotton_A_12934_CDS 41 112 34 113 PF00626.22 Gelsolin Domain 9 75 76 44.4 1.1e-11 1 CL0092
Cotton_A_12934_CDS 270 305 270 305 PF02209.19 VHP Domain 1 36 36 54.9 6.7e-15 1 No_clan
Cotton_A_32755_CDS 44 142 4 143 PF00134.23 Cyclin_N Domain 34 126 127 77.2 8.9e-22 1 CL0065
Cotton_A_19083_CDS 220 265 220 266 PF01344.25 Kelch_1 Repeat 1 45 46 37.1 1.7e-09 1 CL0186
Cotton_A_19083_CDS 268 314 268 315 PF01344.25 Kelch_1 Repeat 1 45 46 35.2 6.7e-09 1 CL0186
Cotton_A_36794_CDS 133 177 128 177 PF00010.26 HLH Domain 6 53 53 35.8 5.8e-09 1 No_clan
Cotton_A_38280_CDS 97 186 95 191 PF01453.24 B_lectin Domain 3 97 105 75.5 4.2e-21 1 No_clan
Cotton_A_00881_CDS 150 301 147 304 PF01529.20 DHHC Family 5 131 134 101.9 2.8e-29 1 No_clan
Cotton_A_17115_CDS 62 180 60 182 PF15413.6 PH_11 Domain 3 103 105 56.2 3.9e-15 1 CL0266
Cotton_A_17115_CDS 389 724 389 728 PF01237.18 Oxysterol_BP Family 1 334 373 358.8 2.9e-107 1 No_clan
Cotton_A_11913_CDS 40 551 23 553 PF01602.20 Adaptin_N Family 19 521 524 316.0 4.2e-94 1 CL0020
Cotton_A_11913_CDS 724 835 722 835 PF09066.10 B2-adapt-app_C Domain 3 112 112 96.9 7.3e-28 1 CL0545
Cotton_A_07527_CDS 14 154 13 154 PF04096.14 Nucleoporin2 Family 2 149 149 134.1 4.1e-39 1 CL0661
Cotton_A_07527_CDS 544 825 544 825 PF12110.8 Nup96 Domain 1 292 292 234.1 1.7e-69 1 No_clan
Cotton_A_00015_CDS 1 138 1 138 PF05514.11 HR_lesion Family 1 138 138 161.0 1.8e-47 1 CL0131
Cotton_A_16516_CDS 214 527 210 530 PF16529.5 Ge1_WD40 Domain 6 324 329 77.9 6.4e-22 1 CL0186
Cotton_A_29979_CDS 74 216 72 216 PF00582.26 Usp Domain 4 141 141 76.0 4e-21 1 CL0039
Cotton_A_20486_CDS 75 296 75 300 PF05703.11 Auxin_canalis Family 1 243 256 266.5 3.2e-79 1 No_clan
Cotton_A_20486_CDS 322 425 322 427 PF08458.10 PH_2 Family 1 103 105 147.7 1.2e-43 1 CL0266
Cotton_A_00836_CDS 348 508 348 509 PF03914.17 CBF Family 1 169 170 122.3 2e-35 1 No_clan
Cotton_A_33689_CDS 76 197 76 199 PF00004.29 AAA Domain 1 130 132 61.2 1.3e-16 1 CL0023
Cotton_A_33689_CDS 264 349 264 350 PF08542.11 Rep_fac_C Domain 1 87 88 66.7 1.9e-18 1 CL0604
Cotton_A_11017_CDS 32 54 31 56 PF13912.6 zf-C2H2_6 Domain 2 24 27 14.4 0.028 1 CL0361
Cotton_A_11017_CDS 80 100 78 100 PF00096.26 zf-C2H2 Domain 3 23 23 16.7 0.0073 1 CL0361
Cotton_A_11017_CDS 241 265 241 267 PF13912.6 zf-C2H2_6 Domain 1 25 27 37.0 2.3e-09 1 CL0361
Cotton_A_01498_CDS 59 132 59 133 PF03110.14 SBP Domain 1 74 75 108.2 1.8e-31 1 No_clan
Cotton_A_11380_CDS 35 244 35 244 PF00314.17 Thaumatin Domain 1 214 214 281.5 4e-84 1 CL0293
Cotton_A_32829_CDS 227 272 224 272 PF00010.26 HLH Domain 5 53 53 35.3 8e-09 1 No_clan
Cotton_A_25294_CDS 13 484 13 484 PF05221.17 AdoHcyase Domain 1 299 299 482.7 3.6e-145 1 CL0325
Cotton_A_25294_CDS 240 403 240 403 PF00670.21 AdoHcyase_NAD Domain 1 162 162 279.4 9e-84 1 CL0063
Cotton_A_12461_CDS 37 86 36 86 PF08711.11 Med26 Domain 2 53 53 41.6 9.2e-11 1 No_clan
Cotton_A_12461_CDS 196 312 196 313 PF07500.14 TFIIS_M Domain 1 111 112 115.4 1.7e-33 1 No_clan
Cotton_A_12461_CDS 326 364 326 364 PF01096.18 TFIIS_C Domain 1 39 39 66.8 1.1e-18 1 CL0167
Cotton_A_25614_CDS 217 241 216 242 PF00642.24 zf-CCCH Family 2 26 27 45.5 4.6e-12 1 CL0537
Cotton_A_29628_CDS 140 384 139 386 PF00141.23 peroxidase Domain 2 227 229 200.7 2.6e-59 1 CL0617
Cotton_A_39353_CDS 92 254 88 267 PF00852.19 Glyco_transf_10 Family 3 163 177 115.4 2.3e-33 1 CL0113
Cotton_A_21093_CDS 204 258 204 260 PF02791.17 DDT Family 1 58 60 50.1 2.6e-13 1 No_clan
Cotton_A_21093_CDS 306 350 305 350 PF15612.6 WHIM1 Family 2 46 46 46.6 1.6e-12 1 No_clan
Cotton_A_21093_CDS 432 474 431 476 PF00628.29 PHD Domain 2 50 52 34.1 1.8e-08 1 CL0390
Cotton_A_18051_CDS 80 394 80 402 PF00295.17 Glyco_hydro_28 Domain 1 309 325 250.4 2.3e-74 1 CL0268
Cotton_A_32287_CDS 196 572 195 572 PF00368.18 HMG-CoA_red Family 2 367 367 484.0 2.6e-145 1 No_clan
Cotton_A_03716_CDS 78 121 77 121 PF13639.6 zf-RING_2 Domain 2 44 44 45.8 5.5e-12 1 CL0229
Cotton_A_15663_CDS 4 189 4 189 PF04161.13 Arv1 Family 1 210 210 146.7 1e-42 1 No_clan
Cotton_A_29380_CDS 93 159 90 159 PF00076.22 RRM_1 Domain 4 70 70 57.4 9.7e-16 1 CL0221
Cotton_A_29380_CDS 184 255 184 255 PF00076.22 RRM_1 Domain 1 70 70 55.7 3.2e-15 1 CL0221
Cotton_A_31512_CDS 119 357 119 360 PF00561.20 Abhydrolase_1 Domain 1 251 257 57.4 1.6e-15 1 CL0028
Cotton_A_17702_CDS 31 150 31 151 PF01597.19 GCV_H Domain 1 121 122 160.2 1.9e-47 1 CL0105
Cotton_A_05162_CDS 14 279 12 279 PF00069.25 Pkinase Domain 3 264 264 187.7 2.5e-55 1 CL0016
Cotton_A_22723_CDS 76 127 73 130 PF03168.13 LEA_2 Domain 4 55 101 27.6 3.1e-06 1 CL0159
Cotton_A_09394_CDS 105 204 75 205 PF00782.20 DSPc Domain 33 132 133 62.6 3.2e-17 1 CL0031
Cotton_A_07561_CDS 56 514 56 520 PF00067.22 p450 Domain 1 457 463 326.6 2.4e-97 1 No_clan
Cotton_A_24378_CDS 115 342 115 342 PF00557.24 Peptidase_M24 Domain 1 209 209 191.8 1.1e-56 1 No_clan
Cotton_A_08134_CDS 41 115 41 115 PF07250.11 Glyoxal_oxid_N Family 1 78 240 93.5 1.2e-26 1 No_clan
Cotton_A_24336_CDS 78 168 78 169 PF03101.15 FAR1 Domain 1 89 90 87.8 5.9e-25 1 CL0274
Cotton_A_10368_CDS 98 184 96 185 PF13837.6 Myb_DNA-bind_4 Domain 3 89 90 56.7 2.4e-15 1 CL0123
Cotton_A_03517_CDS 62 103 61 109 PF00646.33 F-box Domain 2 42 48 25.9 6.3e-06 1 CL0271
Cotton_A_03517_CDS 556 578 555 578 PF13516.6 LRR_6 Repeat 2 24 24 15.0 0.019 1 CL0022
Cotton_A_17188_CDS 2 170 1 171 PF03181.15 BURP Family 50 214 215 130.7 5.5e-38 1 No_clan
Cotton_A_16502_CDS 85 362 84 362 PF07714.17 Pkinase_Tyr Domain 2 259 259 203.1 4.4e-60 1 CL0016
Cotton_A_05289_CDS 37 115 28 132 PF14226.6 DIOX_N Family 17 98 118 54.6 1.7e-14 1 CL0029
Cotton_A_05289_CDS 178 280 177 282 PF03171.20 2OG-FeII_Oxy Domain 2 99 101 92.7 1.6e-26 1 CL0029
Cotton_A_01629_CDS 61 83 61 83 PF00096.26 zf-C2H2 Domain 1 23 23 17.1 0.0055 1 CL0361
Cotton_A_01568_CDS 13 90 11 90 PF00181.23 Ribosomal_L2 Domain 3 77 77 65.0 4.5e-18 1 CL0021
Cotton_A_01568_CDS 98 230 97 234 PF03947.18 Ribosomal_L2_C Domain 2 121 126 158.1 1.1e-46 1 CL0107
Cotton_A_14898_CDS 53 114 47 114 PF05498.11 RALF Family 9 65 65 73.1 2.8e-20 1 No_clan
Cotton_A_00180_CDS 10 101 9 110 PF00168.30 C2 Domain 2 94 103 55.1 7.6e-15 1 CL0154
Cotton_A_01717_CDS 86 371 83 373 PF00579.25 tRNA-synt_1b Family 4 291 293 74.0 1.2e-20 1 CL0039
Cotton_A_30686_CDS 9 45 7 48 PF00646.33 F-box Domain 4 40 48 21.0 0.00021 1 CL0271
Cotton_A_30686_CDS 99 151 97 151 PF01344.25 Kelch_1 Repeat 4 46 46 30.2 2.4e-07 1 CL0186
Cotton_A_30686_CDS 153 200 153 200 PF01344.25 Kelch_1 Repeat 1 46 46 48.2 5.9e-13 1 CL0186
Cotton_A_08695_CDS 79 166 79 175 PF01453.24 B_lectin Domain 1 92 105 79.2 3e-22 1 No_clan
Cotton_A_08695_CDS 258 309 225 310 PF00954.20 S_locus_glycop Domain 61 110 111 30.2 5.2e-07 1 No_clan
Cotton_A_36845_CDS 38 142 37 142 PF05938.11 Self-incomp_S1 Family 2 104 104 78.5 4.6e-22 1 No_clan
Cotton_A_03712_CDS 118 379 118 382 PF00218.21 IGPS Domain 1 251 254 266.0 2.6e-79 1 CL0036
Cotton_A_17832_CDS 115 207 37 247 PF01593.24 Amino_oxidase Domain 176 266 452 21.6 0.00011 1 CL0063
Cotton_A_17832_CDS 500 767 497 772 PF02353.20 CMAS Family 4 268 273 254.5 1.1e-75 1 CL0063
Cotton_A_00278_CDS 88 245 85 249 PF04055.21 Radical_SAM Domain 4 163 167 56.5 4.4e-15 1 CL0036
Cotton_A_00278_CDS 260 350 260 351 PF06968.13 BATS Domain 1 85 86 66.0 2.4e-18 1 No_clan
Cotton_A_02547_CDS 126 211 125 211 PF04719.14 TAFII28 Domain 2 86 86 107.1 3.7e-31 1 CL0012
Cotton_A_21736_CDS 7 65 6 66 PF03931.15 Skp1_POZ Domain 2 62 63 104.8 1.9e-30 1 CL0033
Cotton_A_21736_CDS 107 143 107 147 PF01466.19 Skp1 Domain 1 37 48 74.4 5.5e-21 1 No_clan
Cotton_A_14379_CDS 739 775 736 775 PF00400.32 WD40 Repeat 4 38 38 16.0 0.017 1 CL0186
Cotton_A_14379_CDS 824 859 822 859 PF00400.32 WD40 Repeat 3 38 38 14.2 0.061 1 CL0186
Cotton_A_31660_CDS 60 181 60 187 PF03188.16 Cytochrom_B561 Family 1 130 137 33.7 3.4e-08 1 CL0328
Cotton_A_07723_CDS 46 143 45 144 PF01657.17 Stress-antifung Family 2 94 95 70.7 1.2e-19 1 No_clan
Cotton_A_07723_CDS 159 241 158 244 PF01657.17 Stress-antifung Family 2 92 95 41.0 2.2e-10 1 No_clan
Cotton_A_22014_CDS 96 526 96 526 PF03372.23 Exo_endo_phos Domain 1 233 233 57.1 1.8e-15 1 CL0530
Cotton_A_13983_CDS 3 213 3 214 PF00091.25 Tubulin Domain 1 196 197 227.4 1.7e-67 1 CL0566
Cotton_A_13983_CDS 263 392 263 393 PF03953.17 Tubulin_C Domain 1 125 126 166.2 3.3e-49 1 CL0442
Cotton_A_28856_CDS 90 220 43 220 PF07816.11 DUF1645 Family 55 191 191 69.9 4e-19 1 No_clan
Cotton_A_28908_CDS 96 261 96 261 PF01965.24 DJ-1_PfpI Domain 1 165 165 141.1 2.8e-41 1 CL0014
Cotton_A_28908_CDS 302 464 301 465 PF01965.24 DJ-1_PfpI Domain 2 164 165 148.3 1.7e-43 1 CL0014
Cotton_A_15542_CDS 25 285 25 288 PF12056.8 DUF3537 Family 1 261 390 370.8 6.7e-111 1 No_clan
Cotton_A_15542_CDS 300 362 286 362 PF12056.8 DUF3537 Family 328 390 390 81.8 4.1e-23 1 No_clan
Cotton_A_11819_CDS 24 272 23 272 PF03000.14 NPH3 Family 2 258 258 284.1 1.1e-84 1 No_clan
Cotton_A_30891_CDS 14 109 11 110 PF01657.17 Stress-antifung Family 7 94 95 43.6 3.6e-11 1 No_clan
Cotton_A_30891_CDS 213 297 212 332 PF00069.25 Pkinase Domain 2 89 264 45.9 4.6e-12 1 CL0016
Cotton_A_20335_CDS 174 205 166 205 PF00400.32 WD40 Repeat 7 38 38 13.7 0.091 1 CL0186
Cotton_A_20335_CDS 259 295 257 296 PF00400.32 WD40 Repeat 3 37 38 12.9 0.16 1 CL0186
Cotton_A_13925_CDS 13 75 13 75 PF00462.24 Glutaredoxin Domain 1 60 60 48.9 5.5e-13 1 CL0172
Cotton_A_30010_CDS 36 86 35 105 PF05617.11 Prolamin_like Domain 2 51 71 35.5 8.1e-09 1 CL0482
Cotton_A_14402_CDS 145 310 145 310 PF14543.6 TAXi_N Domain 1 178 178 187.7 2.2e-55 1 CL0129
Cotton_A_14402_CDS 331 482 331 483 PF14541.6 TAXi_C Domain 1 160 161 120.9 4.1e-35 1 CL0129
Cotton_A_02770_CDS 30 79 30 79 PF08100.11 Dimerisation Domain 1 51 51 55.3 4.7e-15 1 CL0123
Cotton_A_02770_CDS 131 342 131 342 PF00891.18 Methyltransf_2 Domain 1 210 210 187.4 1.9e-55 1 CL0063
Cotton_A_11282_CDS 35 92 35 92 PF08246.12 Inhibitor_I29 Domain 1 58 58 62.5 3.7e-17 1 No_clan
Cotton_A_11282_CDS 123 340 123 340 PF00112.23 Peptidase_C1 Domain 1 218 218 275.9 3.1e-82 1 CL0125
Cotton_A_02984_CDS 342 607 339 607 PF00664.23 ABC_membrane Family 5 274 274 102.2 3.7e-29 1 CL0241
Cotton_A_02984_CDS 671 805 671 806 PF00005.27 ABC_tran Domain 1 136 137 66.6 3.2e-18 1 CL0023
Cotton_A_02984_CDS 989 1222 976 1239 PF00664.23 ABC_membrane Family 12 247 274 95.4 4.5e-27 1 CL0241
Cotton_A_02984_CDS 1314 1462 1314 1462 PF00005.27 ABC_tran Domain 1 137 137 103.2 1.5e-29 1 CL0023
Cotton_A_32508_CDS 7 146 7 147 PF00179.26 UQ_con Domain 1 139 140 152.2 6.5e-45 1 CL0208
Cotton_A_14755_CDS 28 463 28 464 PF01490.18 Aa_trans Family 1 408 409 401.1 4.5e-120 1 CL0062
Cotton_A_40100_CDS 105 310 104 310 PF14543.6 TAXi_N Domain 2 178 178 135.6 2.1e-39 1 CL0129
Cotton_A_40100_CDS 349 472 334 473 PF14541.6 TAXi_C Domain 30 160 161 56.7 2.3e-15 1 CL0129
Cotton_A_34765_CDS 68 113 68 113 PF12906.7 RINGv Domain 1 48 48 48.9 5.1e-13 1 CL0229
Cotton_A_34765_CDS 119 235 119 235 PF12428.8 DUF3675 Family 1 119 119 117.9 3.5e-34 1 No_clan
Cotton_A_05020_CDS 34 301 34 301 PF00069.25 Pkinase Domain 1 264 264 202.5 7.7e-60 1 CL0016
Cotton_A_29342_CDS 73 313 73 314 PF09353.10 DUF1995 Domain 1 196 197 152.2 1.7e-44 1 No_clan
Cotton_A_37295_CDS 5 154 1 177 PF02171.17 Piwi Family 59 207 302 58.7 5.3e-16 1 CL0219
Cotton_A_31385_CDS 100 367 100 370 PF03552.14 Cellulose_synt Family 1 276 722 232.7 9.1e-69 1 CL0110
Cotton_A_31385_CDS 370 725 367 731 PF03552.14 Cellulose_synt Family 358 707 722 207.2 4.8e-61 1 CL0110
Cotton_A_12982_CDS 2 361 1 361 PF00022.19 Actin Family 5 407 407 230.7 2.3e-68 1 CL0108
Cotton_A_10894_CDS 38 74 37 75 PF08263.12 LRRNT_2 Family 2 40 41 34.9 1.4e-08 1 No_clan
Cotton_A_10894_CDS 252 273 250 273 PF13516.6 LRR_6 Repeat 3 24 24 10.9 0.38 1 CL0022
Cotton_A_10894_CDS 322 344 321 344 PF13516.6 LRR_6 Repeat 2 24 24 13.1 0.077 1 CL0022
Cotton_A_10894_CDS 348 408 347 408 PF13855.6 LRR_8 Repeat 2 61 61 31.5 1.1e-07 1 CL0022
Cotton_A_10894_CDS 423 445 423 445 PF00560.33 LRR_1 Repeat 1 23 23 10.8 0.66 1 CL0022
Cotton_A_10894_CDS 495 553 494 554 PF13855.6 LRR_8 Repeat 2 60 61 32.1 7.1e-08 1 CL0022
Cotton_A_10894_CDS 683 742 682 742 PF13855.6 LRR_8 Repeat 2 61 61 27.5 1.9e-06 1 CL0022
Cotton_A_10894_CDS 883 1152 883 1155 PF00069.25 Pkinase Domain 1 259 264 160.0 7.1e-47 1 CL0016
Cotton_A_08985_CDS 200 220 198 221 PF13202.6 EF-hand_5 Domain 4 24 25 13.6 0.034 1 CL0220
Cotton_A_08985_CDS 239 262 236 263 PF13833.6 EF-hand_8 Domain 31 54 55 17.9 0.002 1 CL0220
Cotton_A_08985_CDS 287 346 283 348 PF13499.6 EF-hand_7 Domain 5 67 71 32.8 6.9e-08 1 CL0220
Cotton_A_07185_CDS 85 133 80 133 PF04570.14 zf-FLZ Domain 6 54 54 78.2 2.3e-22 1 CL0175
Cotton_A_07185_CDS 322 586 320 586 PF09412.10 XendoU Family 3 265 265 324.0 6e-97 1 No_clan
Cotton_A_11255_CDS 33 466 32 486 PF00067.22 p450 Domain 2 438 463 281.1 1.5e-83 1 No_clan
Cotton_A_14859_CDS 109 237 109 238 PF00134.23 Cyclin_N Domain 1 126 127 141.8 9.1e-42 1 CL0065
Cotton_A_14859_CDS 240 362 240 363 PF02984.19 Cyclin_C Domain 1 118 119 106.3 9.8e-31 1 CL0065
Cotton_A_09785_CDS 358 411 354 419 PF01842.25 ACT Domain 6 58 67 28.7 8e-07 1 CL0070
Cotton_A_06412_CDS 165 363 163 391 PF00069.25 Pkinase Domain 4 198 264 159.0 1.5e-46 1 CL0016
Cotton_A_21314_CDS 5 237 4 243 PF01370.21 Epimerase Family 2 231 241 75.1 5.6e-21 1 CL0063
Cotton_A_32860_CDS 138 191 137 191 PF14416.6 PMR5N Domain 2 53 53 77.6 6.6e-22 1 No_clan
Cotton_A_32860_CDS 192 480 192 481 PF13839.6 PC-Esterase Family 1 282 283 314.1 1.1e-93 1 CL0264
Cotton_A_02070_CDS 110 371 109 374 PF00561.20 Abhydrolase_1 Domain 2 253 257 99.5 2.3e-28 1 CL0028
Cotton_A_02399_CDS 130 190 130 190 PF03106.15 WRKY Domain 1 59 59 94.7 2.8e-27 1 CL0274
Cotton_A_32561_CDS 33 120 31 120 PF14632.6 SPT6_acidic Family 1 89 89 55.8 5.4e-15 1 No_clan
Cotton_A_32561_CDS 724 881 722 881 PF14639.6 YqgF Domain 3 150 150 61.0 1.1e-16 1 CL0580
Cotton_A_32561_CDS 885 986 885 987 PF14635.6 HHH_7 Domain 1 103 104 65.2 5.8e-18 1 CL0198
Cotton_A_32561_CDS 1001 1087 1000 1087 PF17674.1 HHH_9 Domain 2 70 70 26.4 9.5e-06 1 CL0198
Cotton_A_32561_CDS 1202 1419 1202 1419 PF14633.6 SH2_2 Domain 1 216 216 247.7 8.1e-74 1 CL0541
Cotton_A_17799_CDS 73 109 72 109 PF12023.8 DUF3511 Family 2 38 45 47.1 1.5e-12 1 No_clan
Cotton_A_06397_CDS 59 144 30 148 PF02536.14 mTERF Family 35 118 314 26.2 3.5e-06 1 No_clan
Cotton_A_06397_CDS 115 260 113 261 PF02536.14 mTERF Family 166 313 314 101.0 6e-29 1 No_clan
Cotton_A_07245_CDS 15 137 15 144 PF04857.20 CAF1 Family 1 126 319 42.7 4e-11 1 CL0219
Cotton_A_07245_CDS 159 243 140 243 PF04857.20 CAF1 Family 210 319 319 28.4 8.7e-07 1 CL0219
Cotton_A_15349_CDS 40 497 40 507 PF00067.22 p450 Domain 1 453 463 345.9 3.3e-103 1 No_clan
Cotton_A_14192_CDS 30 70 30 70 PF00097.25 zf-C3HC4 Domain 1 41 41 25.5 8.9e-06 1 CL0229
Cotton_A_30568_CDS 59 293 59 294 PF09353.10 DUF1995 Domain 1 196 197 128.2 4.1e-37 1 No_clan
Cotton_A_05435_CDS 123 294 123 294 PF00270.29 DEAD Domain 1 176 176 168.9 8.5e-50 1 CL0023
Cotton_A_05435_CDS 330 439 329 439 PF00271.31 Helicase_C Family 2 111 111 104.1 4.9e-30 1 CL0023
Cotton_A_14681_CDS 25 139 25 300 PF00561.20 Abhydrolase_1 Domain 1 115 257 81.5 7.4e-23 1 CL0028
Cotton_A_23283_CDS 4 146 3 146 PF01280.20 Ribosomal_L19e Family 2 144 144 219.7 1.5e-65 1 No_clan
Cotton_A_18413_CDS 98 529 98 529 PF00854.21 PTR2 Family 1 395 395 404.9 3.2e-121 1 CL0015
Cotton_A_10618_CDS 12 177 12 179 PF03092.16 BT1 Family 1 169 524 140.9 3.7e-41 1 CL0015
Cotton_A_10618_CDS 247 411 179 426 PF03092.16 BT1 Family 336 509 524 127.3 5e-37 1 CL0015
Cotton_A_04239_CDS 283 431 269 445 PF00201.18 UDPGT Family 276 410 499 75.8 2.9e-21 1 CL0113
Cotton_A_04528_CDS 266 530 234 534 PF00118.24 Cpn60_TCP1 Family 118 370 491 78.2 4.9e-22 1 No_clan
Cotton_A_04528_CDS 1437 1519 1428 1523 PF01504.18 PIP5K Family 86 168 274 55.5 4.8e-15 1 CL0016
Cotton_A_04528_CDS 1522 1573 1516 1574 PF01504.18 PIP5K Family 224 273 274 32.9 3.7e-08 1 CL0016
Cotton_A_09468_CDS 7 96 7 97 PF13850.6 ERGIC_N Domain 1 90 91 95.2 2.2e-27 1 No_clan
Cotton_A_09468_CDS 156 331 126 331 PF07970.12 COPIIcoated_ERV Family 39 221 221 156.3 1e-45 1 No_clan
Cotton_A_19921_CDS 88 230 87 231 PF00406.22 ADK Domain 2 150 151 82.6 3e-23 1 CL0023
Cotton_A_27448_CDS 36 499 36 504 PF00067.22 p450 Domain 1 457 463 327.4 1.3e-97 1 No_clan
Cotton_A_37645_CDS 452 515 424 517 PF14694.6 LINES_N Family 287 348 350 25.6 7.8e-06 1 No_clan
Cotton_A_37645_CDS 577 606 576 607 PF14695.6 LINES_C Family 2 31 37 42.1 4e-11 1 No_clan
Cotton_A_28582_CDS 63 131 36 136 PF08695.10 Coa1 Family 28 97 117 26.7 3.6e-06 1 CL0455
Cotton_A_26235_CDS 41 162 40 163 PF00307.31 CH Domain 2 108 109 59.0 4.5e-16 1 CL0188
Cotton_A_26235_CDS 426 719 407 720 PF00225.23 Kinesin Domain 25 332 333 341.1 5.5e-102 1 CL0023
Cotton_A_14378_CDS 21 233 21 234 PF06760.11 DUF1221 Family 1 214 215 332.3 1.1e-99 1 No_clan
Cotton_A_14378_CDS 269 500 262 501 PF07714.17 Pkinase_Tyr Domain 46 258 259 112.8 1.6e-32 1 CL0016
Cotton_A_08203_CDS 190 261 184 261 PF05093.13 CIAPIN1 Family 7 100 100 61.2 1.1e-16 1 No_clan
Cotton_A_25818_CDS 26 501 23 503 PF00083.24 Sugar_tr Family 3 449 452 173.3 7.9e-51 1 CL0015
Cotton_A_34181_CDS 227 426 227 439 PF00069.25 Pkinase Domain 1 199 264 207.3 2.6e-61 1 CL0016
Cotton_A_38290_CDS 400 612 399 613 PF03181.15 BURP Family 2 214 215 206.1 4.7e-61 1 No_clan
Cotton_A_00340_CDS 136 258 125 260 PF00782.20 DSPc Domain 14 131 133 59.3 3.3e-16 1 CL0031
Cotton_A_00340_CDS 352 549 352 549 PF01331.19 mRNA_cap_enzyme Domain 1 195 195 245.7 3.2e-73 1 CL0078
Cotton_A_00340_CDS 553 662 553 662 PF03919.15 mRNA_cap_C Domain 1 108 108 79.8 2.1e-22 1 CL0021
Cotton_A_18857_CDS 20 719 20 720 PF05664.11 DUF810 Family 1 685 686 906.3 1.4e-272 1 No_clan
Cotton_A_12287_CDS 7 171 6 172 PF06364.12 DUF1068 Family 2 167 168 259.6 1.2e-77 1 No_clan
Cotton_A_17282_CDS 6 75 5 75 PF18052.1 Rx_N Domain 2 72 93 63.7 1.4e-17 1 No_clan
Cotton_A_08734_CDS 29 149 27 149 PF04398.12 DUF538 Family 3 112 112 96.8 9.9e-28 1 No_clan
Cotton_A_19943_CDS 103 176 103 177 PF03110.14 SBP Domain 1 74 75 102.4 1.2e-29 1 No_clan
Cotton_A_14292_CDS 12 109 12 110 PF03195.14 LOB Family 1 98 99 145.6 5.5e-43 1 No_clan
Cotton_A_11402_CDS 26 98 26 106 PF09174.10 Maf1 Family 1 84 174 54.9 1.1e-14 1 No_clan
Cotton_A_11402_CDS 129 222 128 225 PF09174.10 Maf1 Family 83 171 174 85.9 3.6e-24 1 No_clan
Cotton_A_38801_CDS 2 101 2 104 PF03195.14 LOB Family 1 95 99 89.6 1.5e-25 1 No_clan
Cotton_A_06766_CDS 9 189 8 189 PF00722.21 Glyco_hydro_16 Domain 2 177 177 205.1 5.7e-61 1 CL0004
Cotton_A_06766_CDS 219 263 217 263 PF06955.12 XET_C Family 2 47 47 78.1 3.2e-22 1 CL0004
Cotton_A_37499_CDS 41 141 41 141 PF04749.17 PLAC8 Family 1 99 99 81.6 6.4e-23 1 No_clan
Cotton_A_35473_CDS 5 65 1 66 PF04043.15 PMEI Domain 95 152 154 39.0 1e-09 1 No_clan
Cotton_A_05571_CDS 16 625 16 625 PF05340.12 DUF740 Family 1 609 609 815.1 4.6e-245 1 No_clan
Cotton_A_00240_CDS 181 212 180 215 PF00514.23 Arm Repeat 7 38 41 21.7 0.00015 1 CL0020
Cotton_A_00240_CDS 553 587 549 588 PF00514.23 Arm Repeat 6 40 41 21.3 0.0002 1 CL0020
Cotton_A_13703_CDS 142 159 142 160 PF13516.6 LRR_6 Repeat 1 18 24 10.7 0.44 1 CL0022
Cotton_A_13703_CDS 326 348 326 348 PF00560.33 LRR_1 Repeat 1 23 23 10.1 1.1 1 CL0022
Cotton_A_13703_CDS 349 363 347 365 PF13516.6 LRR_6 Repeat 3 17 24 9.1 1.4 1 CL0022
Cotton_A_25165_CDS 664 913 655 917 PF03133.15 TTL Family 8 272 295 174.0 3.7e-51 1 CL0179
Cotton_A_05106_CDS 1 84 1 85 PF01248.26 Ribosomal_L7Ae Domain 11 94 95 80.9 4.1e-23 1 CL0101
Cotton_A_06735_CDS 7 44 7 86 PF13850.6 ERGIC_N Domain 1 38 91 28.1 1.9e-06 1 No_clan
Cotton_A_06735_CDS 167 253 164 255 PF00085.20 Thioredoxin Domain 4 83 103 54.8 7.7e-15 1 CL0172
Cotton_A_26734_CDS 257 374 246 418 PF00201.18 UDPGT Family 276 379 499 74.6 6.9e-21 1 CL0113
Cotton_A_05003_CDS 102 178 102 179 PF05129.13 Elf1 Domain 1 77 78 98.7 1.4e-28 1 CL0167
Cotton_A_05450_CDS 97 142 95 149 PF03004.14 Transposase_24 Family 3 49 142 24.5 2.3e-05 1 No_clan
Cotton_A_12472_CDS 1 43 1 56 PF13724.6 DNA_binding_2 Domain 1 44 47 64.9 6.3e-18 1 No_clan
Cotton_A_12472_CDS 231 287 231 288 PF04844.13 Ovate Family 1 57 58 88.2 2.5e-25 1 No_clan
Cotton_A_19956_CDS 31 67 30 68 PF08263.12 LRRNT_2 Family 2 40 41 28.4 1.5e-06 1 No_clan
Cotton_A_19956_CDS 343 606 340 609 PF00069.25 Pkinase Domain 4 259 264 120.6 7.2e-35 1 CL0016
Cotton_A_39078_CDS 112 226 112 228 PF03479.15 DUF296 Domain 1 105 107 97.1 7e-28 1 CL0615
Cotton_A_12151_CDS 3 58 2 60 PF13855.6 LRR_8 Repeat 2 58 61 31.6 1e-07 1 CL0022
Cotton_A_17656_CDS 16 427 7 427 PF00083.24 Sugar_tr Family 45 452 452 342.7 3.4e-102 1 CL0015
Cotton_A_31640_CDS 15 234 15 259 PF14661.6 HAUS6_N Family 1 212 229 131.9 2.5e-38 1 No_clan
Cotton_A_36786_CDS 32 447 32 447 PF00450.22 Peptidase_S10 Domain 1 419 419 468.0 3.8e-140 1 CL0028
Cotton_A_25191_CDS 9 85 9 111 PF14226.6 DIOX_N Family 1 74 118 45.7 9.6e-12 1 CL0029
Cotton_A_25191_CDS 157 257 156 259 PF03171.20 2OG-FeII_Oxy Domain 2 99 101 56.5 3.1e-15 1 CL0029
Cotton_A_11442_CDS 1 21 1 74 PF15697.5 DUF4666 Family 1 21 111 36.3 7.3e-09 1 No_clan
Cotton_A_33031_CDS 8 193 8 193 PF06552.12 TOM20_plant Family 1 187 187 292.1 1.7e-87 1 CL0020
Cotton_A_09078_CDS 6 227 1 227 PF03151.16 TPT Family 64 290 290 67.4 1.3e-18 1 CL0184
Cotton_A_09102_CDS 62 600 62 601 PF02990.16 EMP70 Family 1 518 519 754.0 8.2e-227 1 No_clan
Cotton_A_06544_CDS 1 101 1 101 PF06426.14 SATase_N Domain 5 105 105 112.9 8.6e-33 1 No_clan
Cotton_A_06544_CDS 181 215 181 216 PF00132.24 Hexapep Repeat 1 35 36 40.3 1.5e-10 1 CL0536
Cotton_A_34669_CDS 13 75 13 75 PF00462.24 Glutaredoxin Domain 1 60 60 43.4 3e-11 1 CL0172
Cotton_A_01607_CDS 110 253 109 254 PF00730.25 HhH-GPD Domain 2 107 108 70.9 1.1e-19 1 CL0198
Cotton_A_15701_CDS 379 426 377 426 PF00010.26 HLH Domain 3 53 53 49.6 2.9e-13 1 No_clan
Cotton_A_31931_CDS 90 384 79 386 PF00083.24 Sugar_tr Family 150 450 452 188.8 1.6e-55 1 CL0015
Cotton_A_24049_CDS 38 390 38 391 PF01566.18 Nramp Family 1 357 358 278.0 1e-82 1 CL0062
Cotton_A_31952_CDS 43 127 19 127 PF00583.25 Acetyltransf_1 Family 36 117 117 43.4 3.5e-11 1 CL0257
Cotton_A_02544_CDS 9 157 1 157 PF03492.15 Methyltransf_7 Family 14 179 334 227.8 2e-67 1 CL0063
Cotton_A_38370_CDS 17 121 11 136 PF02458.15 Transferase Family 7 110 434 69.0 3e-19 1 CL0149
Cotton_A_22581_CDS 85 222 84 249 PF04893.17 Yip1 Domain 2 152 172 42.1 7.1e-11 1 CL0112
Cotton_A_09606_CDS 29 307 29 308 PF00795.22 CN_hydrolase Family 1 260 261 233.2 3.1e-69 1 No_clan
Cotton_A_11906_CDS 96 518 93 518 PF00854.21 PTR2 Family 4 395 395 238.4 1.2e-70 1 CL0015
Cotton_A_21559_CDS 2 139 1 142 PF02453.17 Reticulon Family 17 154 157 139.5 8.7e-41 1 CL0484
Cotton_A_16392_CDS 61 152 61 152 PF16656.5 Pur_ac_phosph_N Domain 1 94 94 74.7 6.4e-21 1 CL0159
Cotton_A_16392_CDS 163 361 162 361 PF00149.28 Metallophos Domain 2 204 204 86.5 3.4e-24 1 CL0163
Cotton_A_16392_CDS 387 446 387 449 PF14008.6 Metallophos_C Domain 1 59 63 63.9 1.9e-17 1 No_clan
Cotton_A_25562_CDS 206 396 203 417 PF01397.21 Terpene_synth Domain 4 177 192 141.5 2.4e-41 1 No_clan
Cotton_A_34562_CDS 87 131 86 131 PF13639.6 zf-RING_2 Domain 2 44 44 49.6 3.8e-13 1 CL0229
Cotton_A_07511_CDS 15 137 15 137 PF02365.15 NAM Family 1 126 126 94.4 9.9e-27 1 No_clan
Cotton_A_20311_CDS 40 398 40 399 PF04185.14 Phosphoesterase Family 1 355 356 346.2 2.1e-103 1 CL0088
Cotton_A_34189_CDS 490 640 488 640 PF00005.27 ABC_tran Domain 3 137 137 84.8 7.8e-24 1 CL0023
Cotton_A_34189_CDS 853 1021 829 1023 PF01061.24 ABC2_membrane Family 31 206 210 29.7 3.9e-07 1 CL0181
Cotton_A_40223_CDS 1 79 1 80 PF14223.6 Retrotran_gag_2 Family 61 137 138 46.6 2.5e-12 1 CL0523
Cotton_A_18140_CDS 71 213 62 214 PF00190.22 Cupin_1 Domain 9 150 151 163.9 1.9e-48 1 CL0029
Cotton_A_08452_CDS 59 186 58 299 PF01073.19 3Beta_HSD Family 2 120 280 35.7 4.6e-09 1 CL0063
Cotton_A_35460_CDS 60 97 60 97 PF10276.9 zf-CHCC Domain 1 37 37 53.9 1.3e-14 1 CL0045
Cotton_A_32659_CDS 151 189 151 189 PF13923.6 zf-C3HC4_2 Domain 1 40 40 41.7 7.7e-11 1 CL0229
Cotton_A_05543_CDS 62 198 56 200 PF00828.19 Ribosomal_L27A Family 20 126 128 66.2 4.4e-18 1 CL0588
Cotton_A_25189_CDS 223 349 223 350 PF00134.23 Cyclin_N Domain 1 126 127 134.5 1.7e-39 1 CL0065
Cotton_A_25189_CDS 352 474 352 475 PF02984.19 Cyclin_C Domain 1 118 119 114.5 2.8e-33 1 CL0065
Cotton_A_10645_CDS 266 580 264 581 PF12043.8 DUF3527 Family 3 325 351 336.4 2.6e-100 1 CL0395
Cotton_A_10645_CDS 597 715 595 715 PF00238.19 Ribosomal_L14 Domain 4 122 122 117.8 2.8e-34 1 No_clan
Cotton_A_02609_CDS 36 93 35 94 PF02778.14 tRNA_int_endo_N Domain 2 53 67 37.5 1.4e-09 1 CL0476
Cotton_A_35037_CDS 6 329 6 330 PF16363.5 GDP_Man_Dehyd Domain 1 331 332 226.7 4.8e-67 1 CL0063
Cotton_A_05236_CDS 1 53 1 57 PF02458.15 Transferase Family 376 429 434 23.1 2.5e-05 1 CL0149
Cotton_A_28063_CDS 78 125 73 126 PF04570.14 zf-FLZ Domain 6 53 54 71.5 2.8e-20 1 CL0175
Cotton_A_20942_CDS 38 78 34 80 PF16016.5 VASt Domain 70 113 154 30.3 4.8e-07 1 CL0209
Cotton_A_36340_CDS 191 325 191 328 PF07534.16 TLD Domain 1 135 139 95.7 2.7e-27 1 No_clan
Cotton_A_24592_CDS 216 258 215 258 PF13639.6 zf-RING_2 Domain 2 44 44 44.3 1.6e-11 1 CL0229
Cotton_A_29434_CDS 174 399 174 400 PF00264.20 Tyrosinase Domain 1 221 222 124.4 7.9e-36 1 CL0205
Cotton_A_29434_CDS 407 458 407 458 PF12142.8 PPO1_DWL Domain 1 52 52 89.4 9.1e-26 1 No_clan
Cotton_A_29434_CDS 489 613 488 613 PF12143.8 PPO1_KFDV Domain 2 130 130 110.1 7.8e-32 1 CL0122
Cotton_A_01527_CDS 65 574 65 574 PF00330.20 Aconitase Family 1 461 461 590.7 2.2e-177 1 No_clan
Cotton_A_01527_CDS 703 830 702 832 PF00694.19 Aconitase_C Domain 2 129 131 146.6 5e-43 1 CL0364
Cotton_A_39171_CDS 56 345 53 352 PF00150.18 Cellulase Domain 4 251 281 56.1 3.8e-15 1 CL0058
Cotton_A_04050_CDS 29 110 29 110 PF00081.22 Sod_Fe_N Domain 1 82 82 118.8 1e-34 1 No_clan
Cotton_A_04050_CDS 120 222 120 224 PF02777.18 Sod_Fe_C Domain 1 100 102 120.2 3.6e-35 1 No_clan
Cotton_A_38193_CDS 171 244 171 245 PF03110.14 SBP Domain 1 74 75 109.4 7.9e-32 1 No_clan
Cotton_A_03518_CDS 17 149 14 149 PF04690.13 YABBY Family 20 162 162 201.4 1.3e-59 1 CL0114
Cotton_A_32963_CDS 142 400 142 400 PF00069.25 Pkinase Domain 1 264 264 246.9 2.1e-73 1 CL0016
Cotton_A_32963_CDS 448 508 445 509 PF13499.6 EF-hand_7 Domain 4 70 71 48.3 1e-12 1 CL0220
Cotton_A_32963_CDS 519 579 517 579 PF13499.6 EF-hand_7 Domain 3 71 71 46.9 2.8e-12 1 CL0220
Cotton_A_25947_CDS 155 230 154 230 PF00498.26 FHA Family 2 69 69 64.5 8.1e-18 1 CL0357
Cotton_A_25947_CDS 262 518 255 518 PF00481.21 PP2C Family 8 258 258 152.8 1.3e-44 1 CL0238
Cotton_A_09422_CDS 14 80 13 81 PF01423.22 LSM Domain 2 66 67 64.3 6.1e-18 1 CL0527
Cotton_A_09620_CDS 97 243 92 252 PF00069.25 Pkinase Domain 6 147 264 111.0 6e-32 1 CL0016
Cotton_A_27756_CDS 107 551 105 553 PF00083.24 Sugar_tr Family 4 449 452 305.0 9e-91 1 CL0015
Cotton_A_04878_CDS 44 67 42 68 PF00642.24 zf-CCCH Family 3 26 27 35.8 5.1e-09 1 CL0537
Cotton_A_04878_CDS 90 114 89 114 PF00642.24 zf-CCCH Family 3 27 27 39.0 5.1e-10 1 CL0537
Cotton_A_04878_CDS 136 159 134 160 PF00642.24 zf-CCCH Family 3 26 27 38.1 9.7e-10 1 CL0537
Cotton_A_04878_CDS 298 322 296 322 PF00642.24 zf-CCCH Family 3 27 27 32.9 4.3e-08 1 CL0537
Cotton_A_04878_CDS 347 368 343 368 PF00642.24 zf-CCCH Family 6 27 27 26.6 3.8e-06 1 CL0537
Cotton_A_04859_CDS 108 271 99 284 PF12348.8 CLASP_N Family 50 212 227 31.4 1.3e-07 1 CL0020
Cotton_A_23341_CDS 285 432 269 439 PF00201.18 UDPGT Family 271 407 499 90.7 9.2e-26 1 CL0113
Cotton_A_34519_CDS 36 373 35 374 PF11955.8 PORR Family 2 325 326 367.2 6.1e-110 1 No_clan
Cotton_A_17416_CDS 36 121 36 121 PF02298.17 Cu_bind_like Domain 1 84 84 82.1 2.2e-23 1 CL0026
Cotton_A_14116_CDS 130 152 129 158 PF00023.30 Ank Repeat 2 25 32 23.8 4.2e-05 1 CL0465
Cotton_A_14116_CDS 187 276 187 281 PF12796.7 Ank_2 Repeat 1 78 83 47.3 2.4e-12 1 CL0465
Cotton_A_14116_CDS 284 306 284 312 PF00023.30 Ank Repeat 1 23 32 19.6 0.00086 1 CL0465
Cotton_A_14116_CDS 453 570 452 571 PF13962.6 PGG Domain 2 115 116 81.0 5.4e-23 1 No_clan
Cotton_A_00729_CDS 96 372 95 373 PF00483.23 NTP_transferase Family 2 247 248 255.8 4.2e-76 1 CL0110
Cotton_A_34488_CDS 1 76 1 77 PF03936.16 Terpene_synth_C Domain 191 266 267 70.4 1.4e-19 1 CL0613
Cotton_A_05038_CDS 233 274 198 274 PF03765.15 CRAL_TRIO_N Domain 16 54 54 39.0 6.8e-10 1 CL0214
Cotton_A_05038_CDS 298 458 295 459 PF00650.20 CRAL_TRIO Domain 7 158 159 113.9 5.8e-33 1 CL0512
Cotton_A_33174_CDS 132 290 112 353 PF01704.18 UDPGP Family 46 192 413 62.7 2.4e-17 1 CL0110
Cotton_A_15653_CDS 56 155 52 155 PF03168.13 LEA_2 Domain 5 101 101 35.9 8.3e-09 1 CL0159
Cotton_A_36246_CDS 93 228 93 228 PF08536.11 Whirly Domain 1 136 136 206.0 1.6e-61 1 CL0609
Cotton_A_28973_CDS 11 182 3 183 PF00067.22 p450 Domain 137 303 463 53.5 1.7e-14 1 No_clan
Cotton_A_34484_CDS 32 202 32 202 PF01397.21 Terpene_synth Domain 1 192 192 205.8 4.8e-61 1 No_clan
Cotton_A_34484_CDS 233 367 233 376 PF03936.16 Terpene_synth_C Domain 1 135 267 188.0 2e-55 1 CL0613
Cotton_A_24006_CDS 139 259 110 273 PF17177.4 PPR_long Domain 48 175 212 30.9 1.7e-07 1 CL0020
Cotton_A_24006_CDS 285 310 284 312 PF01535.20 PPR Family 4 29 31 14.5 0.033 1 CL0020
Cotton_A_24006_CDS 311 358 310 359 PF13041.6 PPR_2 Repeat 2 49 50 35.0 1.2e-08 1 CL0020
Cotton_A_24006_CDS 386 409 385 411 PF01535.20 PPR Family 3 26 31 17.7 0.0031 1 CL0020
Cotton_A_11399_CDS 11 80 11 81 PF00076.22 RRM_1 Domain 1 69 70 68.0 4.7e-19 1 CL0221
Cotton_A_11612_CDS 32 454 32 465 PF00067.22 p450 Domain 1 446 463 226.8 4.5e-67 1 No_clan
Cotton_A_27957_CDS 83 136 82 137 PF00046.29 Homeodomain Domain 3 56 57 56.0 2.5e-15 1 CL0123
Cotton_A_27957_CDS 138 179 138 180 PF02183.18 HALZ Coiled-coil 1 42 43 59.5 2.7e-16 1 No_clan
Cotton_A_35682_CDS 116 140 116 140 PF00096.26 zf-C2H2 Domain 1 23 23 16.2 0.011 1 CL0361
Cotton_A_11496_CDS 93 246 93 246 PF08847.11 Crr6 Domain 1 150 150 209.2 2.1e-62 1 No_clan
Cotton_A_17408_CDS 7 126 7 129 PF13456.6 RVT_3 Domain 1 119 124 43.5 2.3e-11 1 CL0219
Cotton_A_01977_CDS 9 557 9 557 PF00862.19 Sucrose_synth Family 1 548 548 903.4 4.1e-272 1 CL0113
Cotton_A_01977_CDS 564 736 560 746 PF00534.20 Glycos_transf_1 Family 5 161 172 114.6 3.4e-33 1 CL0113
Cotton_A_27282_CDS 89 187 87 188 PF03168.13 LEA_2 Domain 3 100 101 31.2 2.4e-07 1 CL0159
Cotton_A_29982_CDS 36 191 36 192 PF02453.17 Reticulon Family 1 156 157 150.3 4.2e-44 1 CL0484
Cotton_A_07509_CDS 31 236 26 244 PF16746.5 BAR_3 Domain 22 222 238 32.0 1e-07 1 CL0145
Cotton_A_27711_CDS 34 126 29 133 PF13962.6 PGG Domain 7 107 116 75.0 3.9e-21 1 No_clan
Cotton_A_23909_CDS 195 212 193 222 PF01535.20 PPR Family 4 21 31 11.5 0.28 1 CL0020
Cotton_A_23909_CDS 227 257 227 257 PF01535.20 PPR Family 1 31 31 12.7 0.12 1 CL0020
Cotton_A_23909_CDS 292 338 291 340 PF13041.6 PPR_2 Repeat 2 48 50 43.4 2.9e-11 1 CL0020
Cotton_A_23909_CDS 364 409 361 410 PF13041.6 PPR_2 Repeat 4 49 50 37.1 2.6e-09 1 CL0020
Cotton_A_23909_CDS 447 470 444 470 PF01535.20 PPR Family 8 31 31 16.1 0.0099 1 CL0020
Cotton_A_23909_CDS 472 521 472 521 PF13041.6 PPR_2 Repeat 1 50 50 59.4 2.9e-16 1 CL0020
Cotton_A_23909_CDS 542 591 542 591 PF13041.6 PPR_2 Repeat 1 50 50 68.2 5.2e-19 1 CL0020
Cotton_A_23909_CDS 628 656 627 657 PF12854.7 PPR_1 Repeat 5 33 34 30.4 2.2e-07 1 CL0020
Cotton_A_23909_CDS 660 691 659 692 PF12854.7 PPR_1 Repeat 2 33 34 51.6 5.5e-14 1 CL0020
Cotton_A_23909_CDS 702 731 701 731 PF01535.20 PPR Family 2 31 31 16.3 0.0082 1 CL0020
Cotton_A_23909_CDS 733 781 733 782 PF13041.6 PPR_2 Repeat 1 49 50 60.8 1e-16 1 CL0020
Cotton_A_23909_CDS 799 832 799 832 PF12854.7 PPR_1 Repeat 1 34 34 34.0 1.8e-08 1 CL0020
Cotton_A_23909_CDS 912 955 910 957 PF13041.6 PPR_2 Repeat 5 48 50 33.0 4.9e-08 1 CL0020
Cotton_A_08910_CDS 9 170 8 171 PF00160.21 Pro_isomerase Domain 2 157 158 165.7 9.5e-49 1 CL0475
Cotton_A_32771_CDS 11 86 11 87 PF00645.18 zf-PARP Domain 1 81 82 66.9 2.2e-18 1 CL0167
Cotton_A_32771_CDS 108 179 108 181 PF00645.18 zf-PARP Domain 1 80 82 52.3 7.6e-14 1 CL0167
Cotton_A_32771_CDS 301 350 300 351 PF08063.12 PADR1 Domain 2 52 53 69.3 1.8e-19 1 CL0306
Cotton_A_32771_CDS 405 478 401 478 PF00533.26 BRCT Family 6 79 79 31.5 1.7e-07 1 CL0459
Cotton_A_32771_CDS 531 610 531 611 PF05406.15 WGR Domain 1 79 80 68.5 3.8e-19 1 No_clan
Cotton_A_32771_CDS 632 742 625 742 PF02877.14 PARP_reg Domain 21 136 136 98.1 4.3e-28 1 No_clan
Cotton_A_32771_CDS 756 946 756 948 PF00644.20 PARP Family 1 184 195 230.3 1.5e-68 1 CL0084
Cotton_A_27710_CDS 26 119 22 122 PF13962.6 PGG Domain 6 107 116 79.6 1.5e-22 1 No_clan
Cotton_A_28674_CDS 171 215 169 220 PF07716.15 bZIP_2 Family 3 46 54 30.2 3.6e-07 1 CL0018
Cotton_A_28674_CDS 258 331 257 333 PF14144.6 DOG1 Family 2 75 77 101.1 2.9e-29 1 No_clan
Cotton_A_04044_CDS 129 190 129 190 PF03106.15 WRKY Domain 1 59 59 85.4 2.2e-24 1 CL0274
Cotton_A_27189_CDS 10 77 10 81 PF04564.15 U-box Domain 1 68 73 66.7 1.5e-18 1 CL0229
Cotton_A_19053_CDS 78 167 77 176 PF01453.24 B_lectin Domain 2 93 105 56.2 4e-15 1 No_clan
Cotton_A_19053_CDS 535 796 533 798 PF00069.25 Pkinase Domain 4 259 264 164.0 4.3e-48 1 CL0016
Cotton_A_03930_CDS 13 142 13 142 PF02365.15 NAM Family 1 126 126 122.7 1.6e-35 1 No_clan
Cotton_A_08444_CDS 137 301 132 310 PF03151.16 TPT Family 11 177 290 200.6 3.5e-59 1 CL0184
Cotton_A_08444_CDS 330 449 327 449 PF03151.16 TPT Family 174 290 290 141.4 3.6e-41 1 CL0184
Cotton_A_02913_CDS 84 235 83 238 PF03634.13 TCP Family 2 154 156 143.8 6.3e-42 1 No_clan
Cotton_A_06658_CDS 1 76 1 88 PF00069.25 Pkinase Domain 80 151 264 41.3 1.2e-10 1 CL0016
Cotton_A_06658_CDS 70 259 51 259 PF06045.11 Rhamnogal_lyase Family 23 213 213 246.1 2.4e-73 1 CL0103
Cotton_A_06658_CDS 414 486 413 487 PF14686.6 fn3_3 Domain 2 74 75 89.2 1.1e-25 1 CL0287
Cotton_A_06658_CDS 500 689 500 689 PF14683.6 CBM-like Domain 1 165 165 156.0 7.4e-46 1 CL0202
Cotton_A_04364_CDS 9 50 8 50 PF00400.32 WD40 Repeat 2 38 38 26.9 5.8e-06 1 CL0186
Cotton_A_30825_CDS 37 83 36 85 PF13041.6 PPR_2 Repeat 2 48 50 35.3 9.5e-09 1 CL0020
Cotton_A_30825_CDS 112 134 109 138 PF01535.20 PPR Family 4 26 31 13.8 0.053 1 CL0020
Cotton_A_30825_CDS 140 165 140 167 PF01535.20 PPR Family 1 26 31 17.2 0.0044 1 CL0020
Cotton_A_30825_CDS 249 298 249 299 PF13041.6 PPR_2 Repeat 1 49 50 32.1 9.5e-08 1 CL0020
Cotton_A_30825_CDS 351 398 351 400 PF13041.6 PPR_2 Repeat 1 48 50 32.7 6.2e-08 1 CL0020
Cotton_A_30825_CDS 426 451 425 452 PF01535.20 PPR Family 2 27 31 14.6 0.028 1 CL0020
Cotton_A_30825_CDS 525 649 525 649 PF14432.6 DYW_deaminase Family 1 127 127 138.4 1.1e-40 1 CL0109
Cotton_A_22969_CDS 35 151 24 153 PF00917.26 MATH Domain 10 111 113 19.8 0.00065 1 CL0389
Cotton_A_22969_CDS 178 218 177 219 PF00651.31 BTB Domain 2 43 111 43.5 3.1e-11 1 CL0033
Cotton_A_22969_CDS 220 275 218 276 PF00651.31 BTB Domain 66 110 111 28.0 2e-06 1 CL0033
Cotton_A_22425_CDS 10 167 9 167 PF04558.15 tRNA_synt_1c_R1 Family 2 162 162 171.0 1.9e-50 1 No_clan
Cotton_A_22425_CDS 171 262 170 262 PF04557.15 tRNA_synt_1c_R2 Family 2 95 95 41.4 2.1e-10 1 No_clan
Cotton_A_22425_CDS 270 581 269 582 PF00749.21 tRNA-synt_1c Domain 2 313 314 384.1 3.7e-115 1 CL0039
Cotton_A_22425_CDS 584 775 584 775 PF03950.18 tRNA-synt_1c_C Domain 1 174 174 135.6 1.6e-39 1 No_clan
Cotton_A_21742_CDS 6 319 5 327 PF01494.19 FAD_binding_3 Family 3 322 349 79.7 2.4e-22 1 CL0063
Cotton_A_27921_CDS 1 98 1 98 PF00305.19 Lipoxygenase Domain 568 674 674 95.1 3.7e-27 1 No_clan
Cotton_A_02861_CDS 129 178 129 178 PF14570.6 zf-RING_4 Domain 1 48 48 59.6 1.9e-16 1 CL0229
Cotton_A_02861_CDS 374 1135 374 1142 PF03552.14 Cellulose_synt Family 1 714 722 1272.6 0 1 CL0110
Cotton_A_14342_CDS 3 106 1 118 PF03140.15 DUF247 Family 67 174 397 54.5 1.1e-14 1 No_clan
Cotton_A_14342_CDS 117 292 107 292 PF03140.15 DUF247 Family 216 397 397 129.3 2.2e-37 1 No_clan
Cotton_A_17492_CDS 5 111 4 115 PF07714.17 Pkinase_Tyr Domain 3 116 259 68.8 4.3e-19 1 CL0016
Cotton_A_21611_CDS 2 95 1 102 PF00251.20 Glyco_hydro_32N Domain 47 134 305 78.3 7.3e-22 1 CL0143
Cotton_A_21611_CDS 100 232 94 232 PF00251.20 Glyco_hydro_32N Domain 181 305 305 92.5 3.5e-26 1 CL0143
Cotton_A_21611_CDS 236 428 235 429 PF08244.12 Glyco_hydro_32C Domain 2 157 158 81.6 6e-23 1 CL0004
Cotton_A_33956_CDS 3 65 1 73 PF01490.18 Aa_trans Family 63 128 409 29.0 4.3e-07 1 CL0062
Cotton_A_33956_CDS 69 182 61 183 PF01490.18 Aa_trans Family 280 408 409 42.7 2.9e-11 1 CL0062
Cotton_A_06072_CDS 341 414 341 414 PF05022.12 SRP40_C Domain 1 76 76 101.9 2.6e-29 1 No_clan
Cotton_A_06817_CDS 279 324 275 324 PF00010.26 HLH Domain 6 53 53 37.6 1.6e-09 1 No_clan
Cotton_A_03911_CDS 61 132 57 136 PF00153.27 Mito_carr Family 20 87 97 44.0 1.5e-11 1 No_clan
Cotton_A_03911_CDS 156 218 143 234 PF00153.27 Mito_carr Family 17 76 97 32.9 4.6e-08 1 No_clan
Cotton_A_03911_CDS 253 316 240 327 PF00153.27 Mito_carr Family 16 82 97 42.5 4.5e-11 1 No_clan
Cotton_A_35659_CDS 57 201 54 202 PF01730.16 UreF Family 4 131 132 69.0 5.9e-19 1 No_clan
Cotton_A_34632_CDS 747 870 715 870 PF14309.6 DUF4378 Family 55 165 165 26.0 9.8e-06 1 No_clan
Cotton_A_38526_CDS 19 148 19 149 PF00134.23 Cyclin_N Domain 1 126 127 76.4 1.5e-21 1 CL0065
Cotton_A_38526_CDS 151 253 151 272 PF02984.19 Cyclin_C Domain 1 97 119 43.8 2.4e-11 1 CL0065
Cotton_A_36970_CDS 74 223 72 223 PF00005.27 ABC_tran Domain 3 137 137 83.8 1.5e-23 1 CL0023
Cotton_A_08040_CDS 72 135 71 135 PF00808.23 CBFD_NFYB_HMF Domain 2 65 65 72.3 2.9e-20 1 CL0012
Cotton_A_33769_CDS 177 269 142 269 PF01029.18 NusB Domain 39 134 134 46.5 4e-12 1 CL0633
Cotton_A_20294_CDS 112 473 110 474 PF07690.16 MFS_1 Family 2 352 353 205.8 8.4e-61 1 CL0015
Cotton_A_03316_CDS 168 197 167 197 PF01535.20 PPR Family 2 31 31 13.0 0.095 1 CL0020
Cotton_A_03316_CDS 201 248 199 248 PF13041.6 PPR_2 Repeat 3 50 50 42.1 7.3e-11 1 CL0020
Cotton_A_03316_CDS 251 288 249 288 PF13041.6 PPR_2 Repeat 13 50 50 31.7 1.3e-07 1 CL0020
Cotton_A_03316_CDS 310 358 309 358 PF13041.6 PPR_2 Repeat 2 50 50 58.7 4.7e-16 1 CL0020
Cotton_A_03316_CDS 382 407 382 412 PF01535.20 PPR Family 1 26 31 17.7 0.003 1 CL0020
Cotton_A_03316_CDS 415 463 415 463 PF13041.6 PPR_2 Repeat 2 50 50 46.5 3e-12 1 CL0020
Cotton_A_03316_CDS 484 533 484 533 PF13041.6 PPR_2 Repeat 1 50 50 63.9 1.2e-17 1 CL0020
Cotton_A_03316_CDS 558 602 556 602 PF13041.6 PPR_2 Repeat 6 50 50 39.2 5.7e-10 1 CL0020
Cotton_A_03316_CDS 623 672 623 672 PF13041.6 PPR_2 Repeat 1 50 50 70.5 9.5e-20 1 CL0020
Cotton_A_03316_CDS 682 731 681 734 PF13812.6 PPR_3 Repeat 2 51 63 35.9 5.7e-09 1 CL0020
Cotton_A_00968_CDS 37 347 23 347 PF00332.18 Glyco_hydro_17 Domain 13 313 313 196.9 6.1e-58 1 CL0058
Cotton_A_39554_CDS 79 152 79 153 PF03110.14 SBP Domain 1 74 75 109.7 6.2e-32 1 No_clan
Cotton_A_20626_CDS 153 292 153 292 PF13365.6 Trypsin_2 Domain 1 150 150 128.9 2.8e-37 1 CL0124
Cotton_A_20626_CDS 331 427 331 428 PF13180.6 PDZ_2 Domain 1 81 82 54.2 1.4e-14 1 CL0466
Cotton_A_23307_CDS 64 96 64 97 PF07719.17 TPR_2 Repeat 1 33 34 23.7 3.2e-05 1 CL0020
Cotton_A_23307_CDS 172 249 171 249 PF11998.8 DUF3493 Family 2 79 79 83.5 8.6e-24 1 No_clan
Cotton_A_30019_CDS 94 236 93 236 PF03255.14 ACCA Family 2 144 144 181.6 7e-54 1 CL0127
Cotton_A_40951_CDS 79 133 79 134 PF18784.1 CRM1_repeat_2 Repeat 1 55 68 82.9 9.4e-24 1 No_clan
Cotton_A_33939_CDS 63 160 59 161 PF00085.20 Thioredoxin Domain 5 102 103 105.1 1.6e-30 1 CL0172
Cotton_A_36957_CDS 5 145 4 166 PF12710.7 HAD Family 2 142 188 39.6 7.1e-10 1 CL0137
Cotton_A_36957_CDS 275 369 262 379 PF01553.21 Acyltransferase Family 11 119 135 23.4 3.6e-05 1 CL0228
Cotton_A_40733_CDS 66 127 66 127 PF00226.31 DnaJ Domain 1 63 63 68.6 3.8e-19 1 CL0392
Cotton_A_40733_CDS 468 674 465 675 PF11926.8 DUF3444 Family 4 211 212 247.3 1.1e-73 1 No_clan
Cotton_A_30090_CDS 900 990 894 991 PF16770.5 RTT107_BRCT_5 Domain 8 99 100 30.6 2.3e-07 1 CL0459
Cotton_A_15665_CDS 45 174 43 174 PF02365.15 NAM Family 3 126 126 102.5 2.9e-29 1 No_clan
Cotton_A_35695_CDS 543 584 543 584 PF02845.16 CUE Family 1 42 42 41.5 7.7e-11 1 CL0214
Cotton_A_17920_CDS 87 182 87 190 PF00011.21 HSP20 Family 1 90 102 42.6 5e-11 1 CL0190
Cotton_A_05990_CDS 100 516 100 517 PF00854.21 PTR2 Family 1 394 395 322.2 4.2e-96 1 CL0015
Cotton_A_10139_CDS 20 56 20 56 PF01394.20 Clathrin_propel Repeat 1 37 37 28.4 1.3e-06 1 CL0020
Cotton_A_10139_CDS 192 235 192 235 PF01394.20 Clathrin_propel Repeat 1 37 37 39.5 4e-10 1 CL0020
Cotton_A_10139_CDS 382 405 382 405 PF09268.10 Clathrin-link Family 1 24 24 33.4 2e-08 1 CL0020
Cotton_A_10139_CDS 407 472 407 472 PF13838.6 Clathrin_H_link Domain 1 66 66 101.7 1.5e-29 1 CL0020
Cotton_A_10139_CDS 595 728 590 731 PF00637.20 Clathrin Family 7 140 143 77.5 8.7e-22 1 CL0020
Cotton_A_10139_CDS 739 878 738 879 PF00637.20 Clathrin Family 2 142 143 74.9 5.7e-21 1 CL0020
Cotton_A_10139_CDS 888 1021 885 1023 PF00637.20 Clathrin Family 4 141 143 100.5 7.3e-29 1 CL0020
Cotton_A_10139_CDS 1031 1170 1031 1174 PF00637.20 Clathrin Family 1 138 143 109.2 1.5e-31 1 CL0020
Cotton_A_10139_CDS 1185 1319 1180 1320 PF00637.20 Clathrin Family 6 142 143 87.1 9.6e-25 1 CL0020
Cotton_A_10139_CDS 1331 1469 1326 1471 PF00637.20 Clathrin Family 6 141 143 97.9 4.4e-28 1 CL0020
Cotton_A_10139_CDS 1478 1617 1475 1617 PF00637.20 Clathrin Family 4 143 143 102.6 1.6e-29 1 CL0020
Cotton_A_24727_CDS 99 357 99 361 PF03552.14 Cellulose_synt Family 1 275 722 231.1 2.8e-68 1 CL0110
Cotton_A_24727_CDS 360 706 357 710 PF03552.14 Cellulose_synt Family 359 703 722 155.4 2.2e-45 1 CL0110
Cotton_A_13748_CDS 28 346 28 348 PF00332.18 Glyco_hydro_17 Domain 1 311 313 272.8 4.7e-81 1 CL0058
Cotton_A_13748_CDS 375 445 374 445 PF07983.13 X8 Domain 2 76 76 79.5 2.2e-22 1 No_clan
Cotton_A_36259_CDS 102 280 99 282 PF01612.20 DNA_pol_A_exo1 Domain 6 173 176 66.4 2.5e-18 1 CL0219
Cotton_A_26282_CDS 182 224 179 229 PF00170.21 bZIP_1 Family 4 46 64 33.6 3.1e-08 1 CL0018
Cotton_A_31943_CDS 1 528 1 528 PF06101.11 Vps62 Family 5 542 542 817.4 4.5e-246 1 No_clan
Cotton_A_13115_CDS 181 331 178 332 PF02517.16 CPBP Family 5 91 92 34.0 2.8e-08 1 CL0472
Cotton_A_17989_CDS 87 531 87 531 PF00083.24 Sugar_tr Family 1 452 452 363.4 1.7e-108 1 CL0015
Cotton_A_26411_CDS 37 88 37 88 PF08100.11 Dimerisation Domain 1 51 51 58.5 4.9e-16 1 CL0123
Cotton_A_26411_CDS 99 237 76 237 PF00891.18 Methyltransf_2 Domain 69 210 210 150.2 4.8e-44 1 CL0063
Cotton_A_33183_CDS 24 126 23 127 PF00085.20 Thioredoxin Domain 2 102 103 112.5 8.2e-33 1 CL0172
Cotton_A_33183_CDS 142 245 141 246 PF00085.20 Thioredoxin Domain 2 102 103 117.8 1.9e-34 1 CL0172
Cotton_A_33183_CDS 263 356 263 356 PF07749.12 ERp29 Domain 1 96 96 83.5 1.5e-23 1 No_clan
Cotton_A_30696_CDS 1 94 1 105 PF04571.14 Lipin_N Family 1 91 102 100.9 3.2e-29 1 No_clan
Cotton_A_38400_CDS 40 109 39 109 PF17181.4 EPF Family 2 53 53 65.8 2.5e-18 1 No_clan
Cotton_A_10817_CDS 146 414 145 416 PF00069.25 Pkinase Domain 2 260 264 157.5 4.2e-46 1 CL0016
Cotton_A_19363_CDS 38 147 38 155 PF14226.6 DIOX_N Family 1 116 118 81.3 8.8e-23 1 CL0029
Cotton_A_19363_CDS 195 293 193 294 PF03171.20 2OG-FeII_Oxy Domain 3 100 101 80.4 1.1e-22 1 CL0029
Cotton_A_04817_CDS 18 141 6 141 PF04885.13 Stig1 Family 12 139 139 143.0 8e-42 1 No_clan
Cotton_A_13415_CDS 9 61 8 61 PF01423.22 LSM Domain 2 56 67 57.9 5.8e-16 1 CL0527
Cotton_A_34083_CDS 137 321 136 322 PF00390.19 malic Domain 2 181 182 250.2 1.1e-74 1 CL0603
Cotton_A_34083_CDS 332 585 332 585 PF03949.15 Malic_M Domain 1 258 258 324.5 3.9e-97 1 CL0063
Cotton_A_24017_CDS 94 387 92 387 PF01095.19 Pectinesterase Family 3 298 298 236.1 3.4e-70 1 CL0268
Cotton_A_01390_CDS 42 147 38 147 PF01277.17 Oleosin Family 8 113 113 120.5 2.8e-35 1 No_clan
Cotton_A_23812_CDS 86 253 84 254 PF00378.20 ECH_1 Domain 3 168 251 174.6 2.1e-51 1 CL0127
Cotton_A_31834_CDS 7 136 7 186 PF03986.13 Autophagy_N Domain 1 125 137 133.3 5.3e-39 1 No_clan
Cotton_A_31834_CDS 200 260 200 260 PF03987.15 Autophagy_act_C Domain 1 55 55 62.6 3.9e-17 1 CL0097
Cotton_A_31834_CDS 281 305 281 305 PF10381.9 Autophagy_C Domain 1 25 25 55.6 2.7e-15 1 No_clan
Cotton_A_15817_CDS 100 375 99 376 PF00795.22 CN_hydrolase Family 2 260 261 175.8 1e-51 1 No_clan
Cotton_A_00639_CDS 174 211 171 215 PF13920.6 zf-C3HC4_3 Domain 4 45 50 29.2 6.1e-07 1 CL0229
Cotton_A_17088_CDS 5 102 5 103 PF03195.14 LOB Family 1 98 99 132.7 5.6e-39 1 No_clan
Cotton_A_21871_CDS 25 190 25 191 PF14826.6 FACT-Spt16_Nlob Domain 1 160 161 167.8 1.6e-49 1 CL0356
Cotton_A_21871_CDS 207 437 205 438 PF00557.24 Peptidase_M24 Domain 3 208 209 109.3 2.1e-31 1 No_clan
Cotton_A_21871_CDS 556 710 556 710 PF08644.11 SPT16 Family 1 151 151 179.7 3.9e-53 1 CL0266
Cotton_A_21871_CDS 840 923 836 924 PF08512.12 Rtt106 Domain 5 88 89 61.4 8.3e-17 1 CL0266
Cotton_A_15591_CDS 10 233 10 233 PF03998.13 Utp11 Family 1 245 245 199.9 6.3e-59 1 CL0037
Cotton_A_08946_CDS 26 63 22 66 PF00643.24 zf-B_box Domain 5 37 42 24.7 1.9e-05 1 No_clan
Cotton_A_35996_CDS 74 120 73 122 PF13041.6 PPR_2 Repeat 2 48 50 38.9 7.2e-10 1 CL0020
Cotton_A_35996_CDS 172 201 170 201 PF12854.7 PPR_1 Repeat 5 34 34 27.8 1.5e-06 1 CL0020
Cotton_A_35996_CDS 204 240 203 241 PF13041.6 PPR_2 Repeat 2 38 50 36.4 4.3e-09 1 CL0020
Cotton_A_35996_CDS 304 352 304 353 PF13041.6 PPR_2 Repeat 1 49 50 41.7 9.8e-11 1 CL0020
Cotton_A_35996_CDS 380 404 379 406 PF01535.20 PPR Family 3 27 31 18.4 0.0017 1 CL0020
Cotton_A_22924_CDS 393 492 344 496 PF00534.20 Glycos_transf_1 Family 75 168 172 38.9 6e-10 1 CL0113
Cotton_A_38450_CDS 40 55 39 56 PF07145.15 PAM2 Motif 2 17 18 21.6 0.00011 1 No_clan
Cotton_A_38450_CDS 114 176 114 181 PF00076.22 RRM_1 Domain 1 65 70 50.5 1.3e-13 1 CL0221
Cotton_A_38450_CDS 211 278 211 279 PF00076.22 RRM_1 Domain 1 69 70 30.9 1.7e-07 1 CL0221
Cotton_A_14100_CDS 23 108 22 109 PF00428.19 Ribosomal_60s Family 2 79 88 61.4 9.1e-17 1 No_clan
Cotton_A_18672_CDS 77 492 77 507 PF13520.6 AA_permease_2 Family 1 411 425 158.2 2.9e-46 1 CL0062
Cotton_A_18672_CDS 517 567 517 567 PF13906.6 AA_permease_C Domain 1 51 51 61.4 6.4e-17 1 CL0062
Cotton_A_21156_CDS 69 112 68 117 PF00226.31 DnaJ Domain 2 45 63 53.0 2.9e-14 1 CL0392
Cotton_A_21156_CDS 143 222 130 235 PF00293.28 NUDIX Domain 29 115 131 32.4 7.8e-08 1 CL0261
Cotton_A_40303_CDS 75 112 75 112 PF01753.18 zf-MYND Domain 1 38 38 33.4 3.4e-08 1 CL0175
Cotton_A_40303_CDS 583 885 583 885 PF00443.29 UCH Family 1 257 257 150.4 6.1e-44 1 CL0125
Cotton_A_01365_CDS 102 365 101 409 PF00481.21 PP2C Family 3 236 258 205.1 1.4e-60 1 CL0238
Cotton_A_19751_CDS 14 133 13 134 PF05142.12 DUF702 Family 2 149 150 144.5 3.2e-42 1 No_clan
Cotton_A_32139_CDS 184 200 183 200 PF00098.23 zf-CCHC Domain 2 18 18 29.3 5.6e-07 1 CL0511
Cotton_A_32139_CDS 227 241 225 242 PF00098.23 zf-CCHC Domain 3 17 18 22.2 0.00011 1 CL0511
Cotton_A_32139_CDS 336 350 335 350 PF00098.23 zf-CCHC Domain 2 16 18 18.2 0.0019 1 CL0511
Cotton_A_32139_CDS 360 374 358 375 PF00098.23 zf-CCHC Domain 3 17 18 25.3 1.1e-05 1 CL0511
Cotton_A_39321_CDS 155 275 155 276 PF06695.11 Sm_multidrug_ex Family 1 120 121 129.3 1.2e-37 1 No_clan
Cotton_A_16496_CDS 59 110 58 110 PF17181.4 EPF Family 2 53 53 71.5 4.2e-20 1 No_clan
Cotton_A_36063_CDS 16 143 16 143 PF02365.15 NAM Family 1 126 126 120.9 6.2e-35 1 No_clan
Cotton_A_14747_CDS 85 163 84 166 PF07885.16 Ion_trans_2 Family 1 76 79 52.8 2.9e-14 1 CL0030
Cotton_A_14747_CDS 209 277 207 281 PF07885.16 Ion_trans_2 Family 2 73 79 46.7 2.3e-12 1 CL0030
Cotton_A_19333_CDS 27 65 24 65 PF08263.12 LRRNT_2 Family 4 41 41 28.3 1.6e-06 1 No_clan
Cotton_A_19333_CDS 162 184 162 184 PF00560.33 LRR_1 Repeat 1 23 23 10.2 0.99 1 CL0022
Cotton_A_19333_CDS 313 325 311 326 PF13516.6 LRR_6 Repeat 5 17 24 10.7 0.45 1 CL0022
Cotton_A_19333_CDS 408 467 407 467 PF13855.6 LRR_8 Repeat 2 61 61 42.9 3e-11 1 CL0022
Cotton_A_19333_CDS 576 635 575 635 PF13855.6 LRR_8 Repeat 2 61 61 35.2 7.7e-09 1 CL0022
Cotton_A_19333_CDS 845 1067 835 1104 PF00069.25 Pkinase Domain 11 222 264 115.4 2.9e-33 1 CL0016
Cotton_A_21844_CDS 42 205 41 205 PF00582.26 Usp Domain 3 141 141 94.9 6e-27 1 CL0039
Cotton_A_17602_CDS 7 111 6 114 PF00635.26 Motile_Sperm Domain 2 106 109 112.6 7.8e-33 1 CL0556
Cotton_A_24524_CDS 3 61 1 62 PF13410.6 GST_C_2 Domain 16 68 69 28.0 1.6e-06 1 CL0497
Cotton_A_11281_CDS 38 95 38 95 PF08246.12 Inhibitor_I29 Domain 1 58 58 65.9 3.3e-18 1 No_clan
Cotton_A_11281_CDS 127 338 126 339 PF00112.23 Peptidase_C1 Domain 2 217 218 253.0 3.2e-75 1 CL0125
Cotton_A_03291_CDS 90 131 89 135 PF00646.33 F-box Domain 3 44 48 32.6 5e-08 1 CL0271
Cotton_A_09319_CDS 83 137 83 141 PF07939.11 DUF1685 Family 1 56 60 86.2 9.3e-25 1 No_clan
Cotton_A_39425_CDS 3 53 3 72 PF13975.6 gag-asp_proteas Domain 1 53 92 37.3 2.9e-09 1 CL0129
Cotton_A_39425_CDS 163 278 162 300 PF00078.27 RVT_1 Family 2 173 222 67.3 1.4e-18 1 CL0027
Cotton_A_39425_CDS 404 435 402 437 PF17921.1 Integrase_H2C2 Domain 4 33 58 24.7 1.8e-05 1 CL0361
Cotton_A_07538_CDS 80 195 80 212 PF01565.23 FAD_binding_4 Domain 1 115 139 84.8 4.5e-24 1 CL0077
Cotton_A_16818_CDS 206 290 172 290 PF13640.6 2OG-FeII_Oxy_3 Domain 27 96 96 34.2 3.5e-08 1 CL0029
Cotton_A_08317_CDS 101 219 101 220 PF09335.11 SNARE_assoc Family 1 119 120 82.4 3.4e-23 1 No_clan
Cotton_A_30218_CDS 2 171 1 221 PF00069.25 Pkinase Domain 52 212 264 121.6 3.7e-35 1 CL0016
Cotton_A_35155_CDS 9 145 9 146 PF00179.26 UQ_con Domain 1 139 140 165.4 5.6e-49 1 CL0208
Cotton_A_20990_CDS 16 166 5 166 PF00025.21 Arf Domain 11 175 175 181.5 9.5e-54 1 CL0023
Cotton_A_20134_CDS 54 205 54 205 PF00005.27 ABC_tran Domain 1 137 137 101.0 7.4e-29 1 CL0023
Cotton_A_20134_CDS 332 543 330 543 PF01061.24 ABC2_membrane Family 3 210 210 150.8 3.4e-44 1 CL0181
Cotton_A_28135_CDS 45 70 45 71 PF13912.6 zf-C2H2_6 Domain 1 26 27 46.1 3.3e-12 1 CL0361
Cotton_A_28135_CDS 90 113 89 115 PF13912.6 zf-C2H2_6 Domain 2 25 27 38.8 6.1e-10 1 CL0361
Cotton_A_14613_CDS 6 81 5 81 PF04969.16 CS Domain 2 76 76 42.9 7.5e-11 1 CL0190
Cotton_A_02540_CDS 115 299 113 299 PF01545.21 Cation_efflux Family 3 199 199 67.4 1.4e-18 1 No_clan
Cotton_A_02540_CDS 304 378 303 379 PF16916.5 ZT_dimer Domain 2 77 79 46.5 2.9e-12 1 No_clan
Cotton_A_34769_CDS 89 161 88 161 PF11523.8 DUF3223 Family 2 75 75 81.9 4.4e-23 1 No_clan
Cotton_A_36322_CDS 8 144 8 144 PF05222.15 AlaDh_PNT_N Domain 1 136 136 87.3 1.1e-24 1 CL0325
Cotton_A_36322_CDS 466 535 464 564 PF04455.12 Saccharop_dh_N Family 3 72 100 78.0 5.5e-22 1 No_clan
Cotton_A_36322_CDS 575 710 575 710 PF03435.18 Sacchrp_dh_NADP Family 1 130 130 53.6 2.5e-14 1 CL0063
Cotton_A_36322_CDS 714 846 714 848 PF16653.5 Sacchrp_dh_C Domain 1 129 265 151.3 5.3e-44 1 CL0139
Cotton_A_23851_CDS 71 208 67 212 PF00190.22 Cupin_1 Domain 6 147 151 132.8 7e-39 1 CL0029
Cotton_A_17982_CDS 28 78 28 78 PF08100.11 Dimerisation Domain 1 51 51 40.8 1.7e-10 1 CL0123
Cotton_A_03023_CDS 22 143 21 144 PF00241.20 Cofilin_ADF Domain 2 120 121 128.1 1.5e-37 1 CL0092
Cotton_A_24641_CDS 72 225 72 225 PF04759.13 DUF617 Family 1 163 163 196.1 4.1e-58 1 No_clan
Cotton_A_36444_CDS 83 268 83 269 PF14543.6 TAXi_N Domain 1 177 178 142.2 1.9e-41 1 CL0129
Cotton_A_36444_CDS 286 438 286 439 PF14541.6 TAXi_C Domain 1 160 161 89.3 2.2e-25 1 CL0129
Cotton_A_27829_CDS 196 345 186 347 PF00370.21 FGGY_N Domain 97 243 245 57.0 2.1e-15 1 CL0108
Cotton_A_27829_CDS 357 552 356 553 PF02782.16 FGGY_C Domain 2 197 198 86.3 2.2e-24 1 CL0108
Cotton_A_03987_CDS 262 298 240 298 PF03765.15 CRAL_TRIO_N Domain 21 54 54 37.5 2e-09 1 CL0214
Cotton_A_03987_CDS 322 482 318 483 PF00650.20 CRAL_TRIO Domain 7 158 159 106.6 9.9e-31 1 CL0512
Cotton_A_25847_CDS 74 311 74 312 PF00696.28 AA_kinase Family 1 240 241 149.1 1.5e-43 1 No_clan
Cotton_A_37280_CDS 38 144 37 144 PF04398.12 DUF538 Family 2 112 112 89.3 2.1e-25 1 No_clan
Cotton_A_10551_CDS 494 745 492 753 PF00069.25 Pkinase Domain 3 253 264 133.1 1.2e-38 1 CL0016
Cotton_A_10551_CDS 766 835 766 836 PF04564.15 U-box Domain 1 70 73 64.3 8.5e-18 1 CL0229
Cotton_A_00030_CDS 1 106 1 107 PF00501.28 AMP-binding Family 317 422 423 110.3 8.4e-32 1 CL0378
Cotton_A_14315_CDS 158 198 154 204 PF00170.21 bZIP_1 Family 5 45 64 29.1 8.1e-07 1 CL0018
Cotton_A_14315_CDS 240 316 240 316 PF14144.6 DOG1 Family 1 77 77 108.1 1.9e-31 1 No_clan
Cotton_A_23461_CDS 32 195 32 196 PF13883.6 Pyrid_oxidase_2 Domain 1 169 170 174.9 1.3e-51 1 CL0336
Cotton_A_04992_CDS 51 94 50 100 PF05498.11 RALF Family 2 46 65 42.5 9.4e-11 1 No_clan
Cotton_A_22613_CDS 229 375 223 394 PF03357.21 Snf7 Family 9 159 173 46.6 2.7e-12 1 CL0235
Cotton_A_04299_CDS 167 194 165 194 PF01535.20 PPR Family 4 31 31 24.1 2.8e-05 1 CL0020
Cotton_A_04299_CDS 198 243 196 245 PF13041.6 PPR_2 Repeat 3 48 50 31.2 1.8e-07 1 CL0020
Cotton_A_04299_CDS 266 313 266 315 PF13041.6 PPR_2 Repeat 1 48 50 61.8 5.1e-17 1 CL0020
Cotton_A_04299_CDS 318 438 314 451 PF17177.4 PPR_long Domain 70 189 212 35.5 6.4e-09 1 CL0020
Cotton_A_04299_CDS 455 483 454 483 PF01535.20 PPR Family 3 31 31 14.7 0.028 1 CL0020
Cotton_A_04299_CDS 488 517 487 517 PF01535.20 PPR Family 2 31 31 16.4 0.0079 1 CL0020
Cotton_A_04299_CDS 523 552 522 552 PF01535.20 PPR Family 2 31 31 12.9 0.099 1 CL0020
Cotton_A_07565_CDS 24 118 24 118 PF00338.22 Ribosomal_S10 Family 1 98 98 97.7 3.5e-28 1 No_clan
Cotton_A_34900_CDS 1 167 1 167 PF14009.6 DUF4228 Family 1 179 179 103.5 1.7e-29 1 No_clan
Cotton_A_16470_CDS 96 163 93 163 PF00690.26 Cation_ATPase_N Domain 4 69 69 39.5 3.4e-10 1 No_clan
Cotton_A_16470_CDS 216 408 211 411 PF00122.20 E1-E2_ATPase Family 6 178 181 113.9 6e-33 1 No_clan
Cotton_A_16470_CDS 429 750 427 750 PF00702.26 Hydrolase Domain 3 210 210 55.4 9.9e-15 1 CL0137
Cotton_A_16470_CDS 821 865 820 870 PF00689.21 Cation_ATPase_C Family 2 46 182 45.6 6.2e-12 1 No_clan
Cotton_A_32013_CDS 242 331 240 331 PF04576.15 Zein-binding Family 3 92 92 105.4 1.5e-30 1 No_clan
Cotton_A_30012_CDS 126 346 126 346 PF04187.13 Cofac_haem_bdg Domain 1 214 214 137.9 4.5e-40 1 CL0572
Cotton_A_30012_CDS 453 634 453 634 PF11891.8 RETICULATA-like Family 1 177 177 212.1 5.2e-63 1 No_clan
Cotton_A_03854_CDS 22 62 21 62 PF18511.1 F-box_5 Domain 2 42 42 72.7 1.3e-20 1 CL0271
Cotton_A_03854_CDS 81 127 81 127 PF18791.1 Transp_inhibit Family 1 47 47 77.7 3.4e-22 1 No_clan
Cotton_A_03854_CDS 153 173 153 176 PF13516.6 LRR_6 Repeat 1 21 24 18.0 0.0021 1 CL0022
Cotton_A_19946_CDS 80 147 9 147 PF14510.6 ABC_trans_N Domain 30 81 81 39.1 8.6e-10 1 No_clan
Cotton_A_19946_CDS 172 354 172 356 PF00005.27 ABC_tran Domain 1 135 137 56.2 5e-15 1 CL0023
Cotton_A_19946_CDS 508 720 507 720 PF01061.24 ABC2_membrane Family 2 210 210 140.8 3.9e-41 1 CL0181
Cotton_A_19946_CDS 725 788 725 788 PF08370.11 PDR_assoc Family 1 65 65 85.5 1.5e-24 1 No_clan
Cotton_A_19946_CDS 889 1041 889 1041 PF00005.27 ABC_tran Domain 1 137 137 69.5 4.1e-19 1 CL0023
Cotton_A_19946_CDS 1187 1400 1186 1400 PF01061.24 ABC2_membrane Family 2 210 210 194.1 1.8e-57 1 CL0181
Cotton_A_25080_CDS 31 77 31 82 PF00118.24 Cpn60_TCP1 Family 1 47 491 62.9 2.1e-17 1 No_clan
Cotton_A_02718_CDS 7 133 7 133 PF02365.15 NAM Family 1 126 126 133.3 8.5e-39 1 No_clan
Cotton_A_18579_CDS 396 766 396 767 PF03514.14 GRAS Family 1 373 374 384.7 4.1e-115 1 CL0063
Cotton_A_03177_CDS 60 361 59 362 PF01008.17 IF-2B Family 2 281 282 255.3 6e-76 1 CL0246
Cotton_A_28870_CDS 160 294 158 294 PF04535.12 DUF588 Domain 3 150 150 106.8 8.3e-31 1 CL0396
Cotton_A_35557_CDS 86 360 86 360 PF00685.27 Sulfotransfer_1 Domain 1 267 267 213.6 3.3e-63 1 CL0023
Cotton_A_21199_CDS 30 79 30 81 PF13415.6 Kelch_3 Domain 1 47 49 42.9 4.1e-11 1 CL0186
Cotton_A_21199_CDS 123 161 123 170 PF13418.6 Kelch_4 Repeat 1 41 49 39.6 4e-10 1 CL0186
Cotton_A_21199_CDS 174 213 173 216 PF01344.25 Kelch_1 Repeat 2 42 46 36.3 3e-09 1 CL0186
Cotton_A_04444_CDS 58 407 58 413 PF11744.8 ALMT Family 1 360 469 508.3 2e-152 1 CL0307
Cotton_A_13196_CDS 43 150 42 151 PF06337.12 DUSP Domain 2 91 92 80.1 1.4e-22 1 No_clan
Cotton_A_13196_CDS 325 905 324 905 PF00443.29 UCH Family 2 257 257 269.3 3.2e-80 1 CL0125
Cotton_A_29269_CDS 161 244 161 244 PF01985.21 CRS1_YhbY Domain 1 84 84 97.9 2.8e-28 1 No_clan
Cotton_A_29269_CDS 380 464 380 464 PF01985.21 CRS1_YhbY Domain 1 84 84 48.6 6.6e-13 1 No_clan
Cotton_A_29269_CDS 614 680 602 680 PF01985.21 CRS1_YhbY Domain 22 84 84 41.5 1.1e-10 1 No_clan
Cotton_A_29269_CDS 905 991 905 991 PF01985.21 CRS1_YhbY Domain 1 84 84 41.3 1.3e-10 1 No_clan
Cotton_A_26090_CDS 56 94 56 94 PF04810.15 zf-Sec23_Sec24 Domain 1 39 39 54.4 9.1e-15 1 No_clan
Cotton_A_26090_CDS 132 399 131 399 PF04811.15 Sec23_trunk Domain 2 243 243 238.3 8.5e-71 1 CL0128
Cotton_A_26090_CDS 410 514 409 514 PF08033.12 Sec23_BS Domain 2 96 96 106.0 1.3e-30 1 No_clan
Cotton_A_26090_CDS 528 624 528 627 PF04815.15 Sec23_helical Domain 1 100 103 78.2 3.5e-22 1 No_clan
Cotton_A_26090_CDS 640 728 638 728 PF00626.22 Gelsolin Domain 3 76 76 55.6 3.7e-15 1 CL0092
Cotton_A_11055_CDS 69 114 68 115 PF00646.33 F-box Domain 2 47 48 28.3 1.2e-06 1 CL0271
Cotton_A_11055_CDS 257 285 248 285 PF00400.32 WD40 Repeat 9 38 38 17.2 0.0069 1 CL0186
Cotton_A_01703_CDS 96 115 95 115 PF00612.27 IQ Motif 2 21 21 22.8 4.8e-05 1 CL0220
Cotton_A_01190_CDS 8 44 8 47 PF00832.20 Ribosomal_L39 Family 1 37 42 67.0 7.8e-19 1 No_clan
Cotton_A_34235_CDS 4 133 2 133 PF07714.17 Pkinase_Tyr Domain 143 259 259 56.6 2.3e-15 1 CL0016
Cotton_A_13300_CDS 121 184 120 184 PF00808.23 CBFD_NFYB_HMF Domain 2 65 65 52.5 4.6e-14 1 CL0012
Cotton_A_26707_CDS 150 360 149 417 PF00069.25 Pkinase Domain 2 206 264 140.0 8.6e-41 1 CL0016
Cotton_A_29523_CDS 529 745 528 746 PF13086.6 AAA_11 Domain 2 260 261 180.3 5.9e-53 1 CL0023
Cotton_A_29523_CDS 754 958 753 959 PF13087.6 AAA_12 Domain 2 198 199 166.3 6.3e-49 1 CL0023
Cotton_A_02430_CDS 29 425 17 425 PF03600.16 CitMHS Family 8 300 300 171.2 2.8e-50 1 CL0182
Cotton_A_31361_CDS 49 384 49 384 PF00933.21 Glyco_hydro_3 Domain 1 319 319 219.3 8.2e-65 1 CL0058
Cotton_A_31361_CDS 421 629 421 631 PF01915.22 Glyco_hydro_3_C Domain 1 202 204 122.4 2.4e-35 1 No_clan
Cotton_A_14959_CDS 31 150 24 151 PF00134.23 Cyclin_N Domain 9 126 127 55.9 3.3e-15 1 CL0065
Cotton_A_14959_CDS 153 266 153 275 PF02984.19 Cyclin_C Domain 1 109 119 39.2 6.2e-10 1 CL0065
Cotton_A_02563_CDS 24 63 23 63 PF08263.12 LRRNT_2 Family 2 41 41 42.6 5.4e-11 1 No_clan
Cotton_A_02563_CDS 131 189 129 189 PF13855.6 LRR_8 Repeat 3 61 61 28.7 8e-07 1 CL0022
Cotton_A_02346_CDS 199 307 198 327 PF00561.20 Abhydrolase_1 Domain 3 107 257 74.6 9.6e-21 1 CL0028
Cotton_A_02636_CDS 121 228 121 231 PF08797.11 HIRAN Domain 1 93 96 54.5 8.1e-15 1 No_clan
Cotton_A_02636_CDS 358 747 358 747 PF00176.23 SNF2_N Family 1 350 350 296.0 2.7e-88 1 CL0023
Cotton_A_02636_CDS 799 847 798 848 PF13920.6 zf-C3HC4_3 Domain 2 49 50 39.8 2.9e-10 1 CL0229
Cotton_A_02636_CDS 873 984 871 984 PF00271.31 Helicase_C Family 3 111 111 58.1 9.7e-16 1 CL0023
Cotton_A_14470_CDS 73 181 73 181 PF00255.19 GSHPx Family 1 108 108 144.3 8.8e-43 1 CL0172
Cotton_A_22847_CDS 6 58 1 59 PF03171.20 2OG-FeII_Oxy Domain 48 100 101 31.5 1.8e-07 1 CL0029
Cotton_A_11022_CDS 13 268 13 268 PF00069.25 Pkinase Domain 1 264 264 243.4 2.6e-72 1 CL0016
Cotton_A_11022_CDS 308 367 308 367 PF03822.14 NAF Domain 1 54 54 82.4 1.9e-23 1 CL0573
Cotton_A_34231_CDS 17 53 16 58 PF00646.33 F-box Domain 2 38 48 28.0 1.4e-06 1 CL0271
Cotton_A_34231_CDS 432 472 428 473 PF08387.10 FBD Family 5 45 46 25.3 1e-05 1 No_clan
Cotton_A_22274_CDS 51 123 47 132 PF00931.22 NB-ARC Domain 7 83 252 43.6 2e-11 1 CL0023
Cotton_A_29938_CDS 15 166 13 167 PF05873.12 Mt_ATP-synt_D Family 5 152 154 69.3 3.2e-19 1 No_clan
Cotton_A_04025_CDS 10 84 9 90 PF16363.5 GDP_Man_Dehyd Domain 2 83 332 36.7 3.1e-09 1 CL0063
Cotton_A_06602_CDS 180 359 180 360 PF00270.29 DEAD Domain 1 175 176 166.1 6.4e-49 1 CL0023
Cotton_A_06602_CDS 395 510 394 510 PF00271.31 Helicase_C Family 2 111 111 104.3 4.5e-30 1 CL0023
Cotton_A_34794_CDS 5 98 4 117 PF14226.6 DIOX_N Family 2 102 118 50.1 4e-13 1 CL0029
Cotton_A_34794_CDS 159 253 154 253 PF03171.20 2OG-FeII_Oxy Domain 6 101 101 96.8 8.4e-28 1 CL0029
Cotton_A_10723_CDS 5 93 1 121 PF00931.22 NB-ARC Domain 127 218 252 42.0 5.9e-11 1 CL0023
Cotton_A_37783_CDS 273 340 273 343 PF14360.6 PAP2_C Domain 1 71 74 54.9 9.4e-15 1 CL0525
Cotton_A_39309_CDS 29 123 24 123 PF14111.6 DUF4283 Domain 7 100 145 80.4 9.3e-23 1 No_clan
Cotton_A_17733_CDS 441 668 436 669 PF04755.12 PAP_fibrillin Family 23 197 198 31.0 2.2e-07 1 No_clan
Cotton_A_20614_CDS 48 102 45 102 PF01471.18 PG_binding_1 Domain 6 57 57 53.4 2.2e-14 1 CL0244
Cotton_A_20614_CDS 136 288 136 289 PF00413.24 Peptidase_M10 Domain 1 157 158 156.4 5.2e-46 1 CL0126
Cotton_A_14155_CDS 30 68 28 69 PF08263.12 LRRNT_2 Family 3 40 41 34.5 1.8e-08 1 No_clan
Cotton_A_14155_CDS 146 205 145 205 PF13855.6 LRR_8 Repeat 2 61 61 29.6 4.4e-07 1 CL0022
Cotton_A_14155_CDS 219 277 217 278 PF13855.6 LRR_8 Repeat 3 60 61 30.5 2.2e-07 1 CL0022
Cotton_A_14155_CDS 658 716 656 716 PF13855.6 LRR_8 Repeat 3 61 61 28.3 1.1e-06 1 CL0022
Cotton_A_14155_CDS 828 1097 824 1097 PF07714.17 Pkinase_Tyr Domain 5 259 259 141.3 3.3e-41 1 CL0016
Cotton_A_27494_CDS 20 192 7 208 PF08449.11 UAA Family 41 220 302 155.0 2.5e-45 1 CL0184
Cotton_A_27494_CDS 193 230 193 234 PF16712.5 SCAB_CC Family 1 38 168 51.7 8.4e-14 1 No_clan
Cotton_A_04223_CDS 40 222 39 223 PF00722.21 Glyco_hydro_16 Domain 2 176 177 185.6 5.2e-55 1 CL0004
Cotton_A_04223_CDS 256 293 247 293 PF06955.12 XET_C Family 9 47 47 51.7 5.7e-14 1 CL0004
Cotton_A_05966_CDS 147 191 144 192 PF00010.26 HLH Domain 5 52 53 31.9 9.3e-08 1 No_clan
Cotton_A_23444_CDS 10 97 9 98 PF03083.16 MtN3_slv Family 2 86 87 82.7 1.4e-23 1 CL0141
Cotton_A_23444_CDS 135 217 134 220 PF03083.16 MtN3_slv Family 2 84 87 86.9 6.7e-25 1 CL0141
Cotton_A_01651_CDS 19 114 18 116 PF15071.6 TMEM220 Family 2 101 103 46.8 3.9e-12 1 No_clan
Cotton_A_29516_CDS 10 233 10 233 PF03998.13 Utp11 Family 1 245 245 198.0 2.3e-58 1 CL0037
Cotton_A_22930_CDS 115 158 114 158 PF13639.6 zf-RING_2 Domain 2 44 44 46.7 2.9e-12 1 CL0229
Cotton_A_30003_CDS 75 118 74 122 PF13041.6 PPR_2 Repeat 2 45 50 34.6 1.6e-08 1 CL0020
Cotton_A_30003_CDS 177 222 176 225 PF13041.6 PPR_2 Repeat 2 47 50 41.9 8.4e-11 1 CL0020
Cotton_A_30003_CDS 251 273 249 279 PF01535.20 PPR Family 3 25 31 9.4 1.3 1 CL0020
Cotton_A_30003_CDS 282 309 280 310 PF01535.20 PPR Family 3 30 31 21.1 0.00025 1 CL0020
Cotton_A_30003_CDS 380 426 379 427 PF13041.6 PPR_2 Repeat 2 49 50 33.3 4e-08 1 CL0020
Cotton_A_30003_CDS 483 510 483 511 PF01535.20 PPR Family 1 28 31 23.7 3.7e-05 1 CL0020
Cotton_A_30003_CDS 583 630 582 631 PF13041.6 PPR_2 Repeat 2 49 50 33.6 3.3e-08 1 CL0020
Cotton_A_30003_CDS 657 681 656 684 PF01535.20 PPR Family 2 26 31 12.5 0.14 1 CL0020
Cotton_A_30003_CDS 756 809 756 812 PF14432.6 DYW_deaminase Family 1 54 127 37.9 1.4e-09 1 CL0109
Cotton_A_02257_CDS 25 98 21 99 PF13499.6 EF-hand_7 Domain 4 70 71 35.1 1.4e-08 1 CL0220
Cotton_A_37148_CDS 31 119 18 128 PF02769.22 AIRS_C Domain 54 146 156 52.9 4.4e-14 1 No_clan
Cotton_A_37148_CDS 196 442 196 443 PF13507.6 GATase_5 Domain 1 240 260 281.4 5e-84 1 CL0014
Cotton_A_03640_CDS 224 288 224 289 PF00076.22 RRM_1 Domain 1 69 70 44.6 9e-12 1 CL0221
Cotton_A_03640_CDS 309 374 309 374 PF00076.22 RRM_1 Domain 1 70 70 35.2 8.1e-09 1 CL0221
Cotton_A_03640_CDS 747 839 747 839 PF04059.12 RRM_2 Family 1 97 97 155.5 3.1e-46 1 CL0221
Cotton_A_05641_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 49.2 4.5e-13 1 CL0123
Cotton_A_05641_CDS 67 111 67 112 PF00249.31 Myb_DNA-binding Domain 1 45 46 49.9 2.7e-13 1 CL0123
Cotton_A_10084_CDS 1 50 1 50 PF04561.14 RNA_pol_Rpb2_2 Domain 141 190 190 48.8 6.2e-13 1 No_clan
Cotton_A_10084_CDS 111 179 111 179 PF04565.16 RNA_pol_Rpb2_3 Domain 1 68 68 86.7 8.5e-25 1 No_clan
Cotton_A_10084_CDS 316 525 315 527 PF00562.28 RNA_pol_Rpb2_6 Domain 2 213 390 171.9 2.1e-50 1 CL0410
Cotton_A_26974_CDS 5 47 1 57 PF00076.22 RRM_1 Domain 17 60 70 35.3 7.7e-09 1 CL0221
Cotton_A_26974_CDS 77 137 77 147 PF00076.22 RRM_1 Domain 1 60 70 58.9 3.3e-16 1 CL0221
Cotton_A_41174_CDS 1 434 1 435 PF02458.15 Transferase Family 1 433 434 229.2 7.5e-68 1 CL0149
Cotton_A_40744_CDS 1 254 1 255 PF03159.18 XRN_N Family 1 241 242 326.6 8.7e-98 1 CL0280
Cotton_A_40744_CDS 264 279 263 279 PF00098.23 zf-CCHC Domain 2 17 18 19.8 0.00059 1 CL0511
Cotton_A_40744_CDS 303 374 300 379 PF17846.1 XRN_M Domain 33 104 443 50.7 1.3e-13 1 No_clan
Cotton_A_40744_CDS 365 663 361 663 PF17846.1 XRN_M Domain 147 443 443 392.4 2.7e-117 1 No_clan
Cotton_A_39073_CDS 23 128 22 129 PF13947.6 GUB_WAK_bind Domain 2 105 106 32.6 1.1e-07 1 No_clan
Cotton_A_39073_CDS 149 209 118 211 PF14380.6 WAK_assoc Domain 41 100 104 27.7 3.6e-06 1 No_clan
Cotton_A_39073_CDS 304 348 304 348 PF13639.6 zf-RING_2 Domain 1 44 44 52.2 5.8e-14 1 CL0229
Cotton_A_07346_CDS 15 188 15 190 PF01725.16 Ham1p_like Domain 1 185 187 182.2 9.1e-54 1 CL0269
Cotton_A_13110_CDS 1 43 1 70 PF08264.13 Anticodon_1 Domain 77 133 152 31.0 2.1e-07 1 CL0258
Cotton_A_20624_CDS 75 213 75 216 PF01966.22 HD Family 1 119 122 49.4 4.7e-13 1 CL0237
Cotton_A_14557_CDS 66 155 66 155 PF00447.17 HSF_DNA-bind Domain 1 96 96 97.6 4.9e-28 1 CL0123
Cotton_A_40193_CDS 3 49 2 56 PF03868.15 Ribosomal_L6e_N Domain 2 46 60 51.8 7.3e-14 1 No_clan
Cotton_A_23102_CDS 52 120 52 121 PF00076.22 RRM_1 Domain 1 69 70 66.2 1.6e-18 1 CL0221
Cotton_A_23102_CDS 150 219 150 219 PF00076.22 RRM_1 Domain 1 70 70 67.8 5.2e-19 1 CL0221
Cotton_A_09009_CDS 81 194 81 195 PF03479.15 DUF296 Domain 1 106 107 99.8 1.1e-28 1 CL0615
Cotton_A_05152_CDS 42 223 40 224 PF00722.21 Glyco_hydro_16 Domain 3 176 177 182.4 5.3e-54 1 CL0004
Cotton_A_05152_CDS 258 294 249 294 PF06955.12 XET_C Family 10 47 47 52.3 3.7e-14 1 CL0004
Cotton_A_34517_CDS 47 186 47 192 PF00069.25 Pkinase Domain 1 131 264 73.3 1.9e-20 1 CL0016
Cotton_A_34517_CDS 309 474 304 474 PF00069.25 Pkinase Domain 132 264 264 73.7 1.5e-20 1 CL0016
Cotton_A_37223_CDS 1 39 1 39 PF03936.16 Terpene_synth_C Domain 229 267 267 41.1 1.3e-10 1 CL0613
Cotton_A_25323_CDS 31 78 31 78 PF00304.20 Gamma-thionin Domain 1 47 47 51.9 6.5e-14 1 CL0054
Cotton_A_20257_CDS 1 53 1 53 PF00403.26 HMA Domain 7 62 62 58.9 4.9e-16 1 No_clan
Cotton_A_32792_CDS 29 381 29 382 PF12819.7 Malectin_like Domain 1 335 336 143.6 7.9e-42 1 CL0202
Cotton_A_32792_CDS 490 690 485 761 PF07714.17 Pkinase_Tyr Domain 6 205 259 145.5 1.7e-42 1 CL0016
Cotton_A_40468_CDS 31 202 31 213 PF03092.16 BT1 Family 1 170 524 152.6 1.1e-44 1 CL0015
Cotton_A_40468_CDS 243 431 219 438 PF03092.16 BT1 Family 286 506 524 147.4 4.1e-43 1 CL0015
Cotton_A_26613_CDS 107 335 107 337 PF02485.21 Branch Family 1 245 247 262.3 4e-78 1 CL0110
Cotton_A_19215_CDS 23 103 22 111 PF00481.21 PP2C Family 2 89 258 41.7 1e-10 1 CL0238
Cotton_A_19215_CDS 157 314 136 316 PF00481.21 PP2C Family 98 255 258 203.0 6.3e-60 1 CL0238
Cotton_A_33999_CDS 43 119 41 123 PF09328.10 Phytochelatin_C Family 10 86 261 101.6 4.3e-29 1 No_clan
Cotton_A_30085_CDS 32 368 31 407 PF01156.19 IU_nuc_hydro Domain 2 268 305 130.8 7.7e-38 1 No_clan
Cotton_A_22555_CDS 2 46 2 46 PF12338.8 RbcS Family 1 45 45 85.5 1.9e-24 1 No_clan
Cotton_A_22555_CDS 71 179 71 179 PF00101.20 RuBisCO_small Domain 1 97 97 133.4 2.2e-39 1 No_clan
Cotton_A_22042_CDS 20 67 20 67 PF12906.7 RINGv Domain 1 48 48 52.3 4.4e-14 1 CL0229
Cotton_A_22042_CDS 73 183 73 183 PF12428.8 DUF3675 Family 1 119 119 107.4 6.5e-31 1 No_clan
Cotton_A_16076_CDS 99 191 32 213 PF05278.12 PEARLI-4 Family 88 181 269 40.5 2.3e-10 1 No_clan
Cotton_A_06847_CDS 55 108 54 109 PF00646.33 F-box Domain 2 47 48 39.7 3e-10 1 CL0271
Cotton_A_06847_CDS 119 402 119 402 PF01167.18 Tub Domain 1 241 241 300.2 1.3e-89 1 CL0395
Cotton_A_02845_CDS 29 73 27 73 PF08263.12 LRRNT_2 Family 3 41 41 37.3 2.5e-09 1 No_clan
Cotton_A_02845_CDS 101 161 101 161 PF13855.6 LRR_8 Repeat 1 61 61 36.3 3.4e-09 1 CL0022
Cotton_A_02845_CDS 221 281 221 281 PF13855.6 LRR_8 Repeat 1 61 61 32.8 4.2e-08 1 CL0022
Cotton_A_02845_CDS 531 569 523 569 PF13855.6 LRR_8 Repeat 23 61 61 31.1 1.4e-07 1 CL0022
Cotton_A_28236_CDS 10 330 8 330 PF05910.12 DUF868 Family 3 279 279 280.4 1.9e-83 1 No_clan
Cotton_A_08917_CDS 79 295 79 296 PF03181.15 BURP Family 1 214 215 250.4 1.3e-74 1 No_clan
Cotton_A_27876_CDS 47 441 35 462 PF13347.6 MFS_2 Family 12 352 427 43.4 1.6e-11 1 CL0015
Cotton_A_31456_CDS 20 182 12 200 PF01425.21 Amidase Family 41 201 451 169.4 1.3e-49 1 No_clan
Cotton_A_31456_CDS 322 410 245 410 PF01425.21 Amidase Family 357 451 451 21.7 8.7e-05 1 No_clan
Cotton_A_13775_CDS 62 345 62 345 PF00069.25 Pkinase Domain 1 264 264 267.7 9.6e-80 1 CL0016
Cotton_A_01329_CDS 46 98 45 98 PF13637.6 Ank_4 Repeat 2 55 55 50.0 2.9e-13 1 CL0465
Cotton_A_01329_CDS 112 130 111 140 PF00023.30 Ank Repeat 2 20 32 15.4 0.02 1 CL0465
Cotton_A_01329_CDS 177 207 176 208 PF00023.30 Ank Repeat 2 31 32 22.7 9e-05 1 CL0465
Cotton_A_01329_CDS 215 266 205 280 PF12796.7 Ank_2 Repeat 23 66 83 30.0 5.9e-07 1 CL0465
Cotton_A_04012_CDS 119 219 118 219 PF00829.21 Ribosomal_L21p Family 2 101 101 110.9 2.9e-32 1 No_clan
Cotton_A_36212_CDS 110 196 108 196 PF13837.6 Myb_DNA-bind_4 Domain 3 90 90 69.4 2.5e-19 1 CL0123
Cotton_A_36212_CDS 389 472 387 478 PF13837.6 Myb_DNA-bind_4 Domain 3 83 90 48.0 1.3e-12 1 CL0123
Cotton_A_15475_CDS 115 193 98 194 PF01434.18 Peptidase_M41 Domain 41 117 191 95.0 4.8e-27 1 CL0126
Cotton_A_39583_CDS 36 507 36 512 PF00067.22 p450 Domain 1 457 463 332.6 3.6e-99 1 No_clan
Cotton_A_14754_CDS 38 82 36 83 PF00415.18 RCC1 Repeat 5 49 50 52.7 4.9e-14 1 CL0186
Cotton_A_14754_CDS 89 136 87 136 PF00415.18 RCC1 Repeat 3 50 50 55.3 7.7e-15 1 CL0186
Cotton_A_14754_CDS 139 188 139 188 PF00415.18 RCC1 Repeat 1 50 50 57.5 1.5e-15 1 CL0186
Cotton_A_14754_CDS 191 238 191 240 PF00415.18 RCC1 Repeat 1 48 50 52.7 4.7e-14 1 CL0186
Cotton_A_14754_CDS 244 292 243 292 PF00415.18 RCC1 Repeat 2 50 50 49.1 6.4e-13 1 CL0186
Cotton_A_14754_CDS 295 355 295 355 PF00415.18 RCC1 Repeat 1 50 50 54.9 1e-14 1 CL0186
Cotton_A_14754_CDS 360 390 358 402 PF00415.18 RCC1 Repeat 3 33 50 27.9 2.8e-06 1 CL0186
Cotton_A_30191_CDS 103 188 101 189 PF00439.25 Bromodomain Domain 3 83 84 65.3 3.8e-18 1 No_clan
Cotton_A_30191_CDS 262 324 262 325 PF17035.5 BET Domain 1 63 64 64.1 9.7e-18 1 CL0665
Cotton_A_11613_CDS 76 179 74 184 PF00989.25 PAS Domain 4 108 113 43.4 2.8e-11 1 CL0183
Cotton_A_11613_CDS 496 747 496 748 PF07714.17 Pkinase_Tyr Domain 1 258 259 226.5 3.3e-67 1 CL0016
Cotton_A_16641_CDS 36 367 36 369 PF11955.8 PORR Family 1 324 326 397.4 3.9e-119 1 No_clan
Cotton_A_09041_CDS 13 133 13 133 PF01138.21 RNase_PH Domain 1 132 132 84.6 8.2e-24 1 CL0329
Cotton_A_27777_CDS 5 157 4 157 PF00582.26 Usp Domain 3 141 141 106.1 2.1e-30 1 CL0039
Cotton_A_12799_CDS 4 114 2 121 PF09775.9 Keratin_assoc Family 3 117 129 134.5 1.6e-39 1 No_clan
Cotton_A_18661_CDS 10 59 9 59 PF00010.26 HLH Domain 2 53 53 33.9 2.3e-08 1 No_clan
Cotton_A_40056_CDS 644 685 642 685 PF13639.6 zf-RING_2 Domain 3 44 44 42.9 4.4e-11 1 CL0229
Cotton_A_17057_CDS 166 345 166 346 PF00270.29 DEAD Domain 1 175 176 162.5 8.3e-48 1 CL0023
Cotton_A_17057_CDS 381 488 378 488 PF00271.31 Helicase_C Family 2 111 111 110.2 6.6e-32 1 CL0023
Cotton_A_17057_CDS 545 561 544 561 PF00098.23 zf-CCHC Domain 2 18 18 21.3 0.0002 1 CL0511
Cotton_A_04426_CDS 41 89 38 100 PF03878.15 YIF1 Family 10 60 239 40.7 1.9e-10 1 CL0112
Cotton_A_04426_CDS 100 219 95 220 PF03878.15 YIF1 Family 111 238 239 63.6 1.9e-17 1 CL0112
Cotton_A_20923_CDS 49 429 48 429 PF00155.21 Aminotran_1_2 Domain 2 363 363 349.2 2.7e-104 1 CL0061
Cotton_A_25170_CDS 34 147 33 147 PF13962.6 PGG Domain 2 116 116 85.4 2.3e-24 1 No_clan
Cotton_A_37829_CDS 103 454 103 455 PF10250.9 O-FucT Family 1 335 336 200.6 5.2e-59 1 CL0113
Cotton_A_08065_CDS 159 207 126 207 PF08241.12 Methyltransf_11 Domain 47 96 96 28.4 1.9e-06 1 CL0063
Cotton_A_05041_CDS 112 345 112 345 PF02358.16 Trehalose_PPase Family 1 233 233 254.5 6.6e-76 1 CL0137
Cotton_A_01631_CDS 172 531 171 531 PF03514.14 GRAS Family 2 374 374 299.3 3.8e-89 1 CL0063
Cotton_A_09786_CDS 33 74 28 75 PF06404.12 PSK Family 44 89 90 57.2 2.6e-15 1 No_clan
Cotton_A_17236_CDS 210 227 210 230 PF00560.33 LRR_1 Repeat 1 18 23 11.1 0.5 1 CL0022
Cotton_A_22875_CDS 113 134 112 135 PF05678.14 VQ Motif 2 23 28 39.2 3.5e-10 1 No_clan
Cotton_A_22720_CDS 70 171 69 172 PF00044.24 Gp_dh_N Domain 2 100 101 108.9 1.3e-31 1 CL0063
Cotton_A_22720_CDS 225 381 225 381 PF02800.20 Gp_dh_C Domain 1 158 158 224.3 5.5e-67 1 CL0139
Cotton_A_27769_CDS 14 174 14 175 PF00071.22 Ras Domain 1 161 162 204.7 6.3e-61 1 CL0023
Cotton_A_37538_CDS 386 449 386 449 PF08590.10 DUF1771 Domain 1 64 64 59.7 2.6e-16 1 No_clan
Cotton_A_37538_CDS 458 526 458 531 PF01713.21 Smr Family 1 74 80 26.5 6.2e-06 1 No_clan
Cotton_A_14632_CDS 8 151 6 153 PF06708.11 DUF1195 Family 2 145 147 264.1 2.5e-79 1 No_clan
Cotton_A_23093_CDS 267 312 263 312 PF00010.26 HLH Domain 6 53 53 36.5 3.4e-09 1 No_clan
Cotton_A_32550_CDS 37 180 24 182 PF02309.16 AUX_IAA Family 65 235 237 194.5 2.4e-57 1 CL0072
Cotton_A_27667_CDS 16 101 14 102 PF02519.14 Auxin_inducible Family 2 89 90 106.2 7.3e-31 1 No_clan
Cotton_A_04572_CDS 12 59 11 62 PF00847.20 AP2 Domain 2 51 54 31.3 1.8e-07 1 CL0081
Cotton_A_15623_CDS 139 218 134 221 PF13369.6 Transglut_core2 Family 4 80 155 27.4 2.1e-06 1 CL0125
Cotton_A_25521_CDS 1 35 1 35 PF00759.19 Glyco_hydro_9 Domain 377 411 411 21.5 0.00014 1 CL0059
Cotton_A_14392_CDS 110 170 110 170 PF03106.15 WRKY Domain 1 59 59 87.8 3.9e-25 1 CL0274
Cotton_A_11023_CDS 45 147 45 147 PF02298.17 Cu_bind_like Domain 1 84 84 73.5 1e-20 1 CL0026
Cotton_A_20491_CDS 3 122 1 134 PF00790.19 VHS Domain 8 129 141 108.7 2.1e-31 1 CL0009
Cotton_A_20491_CDS 193 266 192 268 PF03127.14 GAT Domain 2 75 77 59.4 3.1e-16 1 No_clan
Cotton_A_02279_CDS 32 203 32 203 PF01397.21 Terpene_synth Domain 1 192 192 207.1 1.9e-61 1 No_clan
Cotton_A_04307_CDS 38 251 33 253 PF03767.14 Acid_phosphat_B Family 15 228 230 222.0 7.4e-66 1 CL0137
Cotton_A_26132_CDS 81 467 80 470 PF00999.21 Na_H_Exchanger Family 2 378 381 129.6 1.2e-37 1 CL0064
Cotton_A_15801_CDS 290 434 277 445 PF00201.18 UDPGT Family 276 408 499 91.5 5.2e-26 1 CL0113
Cotton_A_11692_CDS 137 348 125 354 PF02386.16 TrkH Family 140 353 502 74.1 8e-21 1 CL0030
Cotton_A_11692_CDS 369 432 355 474 PF02386.16 TrkH Family 395 460 502 35.0 5.6e-09 1 CL0030
Cotton_A_19329_CDS 20 120 20 120 PF12776.7 Myb_DNA-bind_3 Domain 1 96 96 51.4 1.6e-13 1 CL0123
Cotton_A_10046_CDS 3 272 3 272 PF00346.19 Complex1_49kDa Family 1 271 271 339.5 1.1e-101 1 No_clan
Cotton_A_26763_CDS 5 377 4 377 PF00022.19 Actin Family 2 407 407 494.4 2e-148 1 CL0108
Cotton_A_08418_CDS 4 188 3 188 PF00485.18 PRK Domain 3 197 197 156.3 7.9e-46 1 CL0023
Cotton_A_08418_CDS 217 418 192 418 PF14681.6 UPRTase Domain 3 207 207 239.9 1.8e-71 1 CL0533
Cotton_A_25555_CDS 113 293 112 293 PF03924.13 CHASE Domain 2 188 188 125.4 2.5e-36 1 CL0165
Cotton_A_25555_CDS 383 448 383 448 PF00512.25 HisKA Domain 1 67 67 60.4 1.3e-16 1 CL0025
Cotton_A_25555_CDS 495 676 495 680 PF02518.26 HATPase_c Domain 1 108 112 107.9 3.8e-31 1 CL0025
Cotton_A_25555_CDS 863 994 863 995 PF00072.24 Response_reg Domain 1 111 112 75.1 4.5e-21 1 CL0304
Cotton_A_17032_CDS 51 104 50 105 PF00646.33 F-box Domain 2 47 48 35.0 8.8e-09 1 CL0271
Cotton_A_17032_CDS 115 398 115 398 PF01167.18 Tub Domain 1 241 241 271.4 7.5e-81 1 CL0395
Cotton_A_38153_CDS 25 279 25 279 PF00069.25 Pkinase Domain 1 264 264 251.1 1.1e-74 1 CL0016
Cotton_A_38153_CDS 334 390 334 390 PF03822.14 NAF Domain 1 54 54 80.9 5.4e-23 1 CL0573
Cotton_A_18170_CDS 39 101 39 101 PF00280.18 potato_inhibit Domain 1 64 64 76.1 2.6e-21 1 CL0367
Cotton_A_38763_CDS 65 179 63 180 PF00059.21 Lectin_C Domain 3 107 108 40.0 5.4e-10 1 CL0056
Cotton_A_38763_CDS 282 347 263 397 PF07714.17 Pkinase_Tyr Domain 27 93 259 37.1 2e-09 1 CL0016
Cotton_A_08238_CDS 23 107 22 108 PF00855.17 PWWP Domain 2 95 96 56.7 2.5e-15 1 CL0049
Cotton_A_22351_CDS 90 150 77 150 PF00382.19 TFIIB Domain 11 71 71 38.2 1.1e-09 1 CL0065
Cotton_A_22351_CDS 188 246 184 247 PF00382.19 TFIIB Domain 12 70 71 29.5 5.6e-07 1 CL0065
Cotton_A_22351_CDS 400 525 400 525 PF07741.13 BRF1 Family 1 101 101 98.3 2.7e-28 1 No_clan
Cotton_A_24619_CDS 89 469 89 471 PF00916.20 Sulfate_transp Family 1 378 380 424.7 2.7e-127 1 CL0062
Cotton_A_24619_CDS 522 641 522 641 PF01740.21 STAS Domain 1 117 117 85.9 1.4e-24 1 CL0502
Cotton_A_00664_CDS 15 100 3 102 PF02519.14 Auxin_inducible Family 12 88 90 87.6 4.6e-25 1 No_clan
Cotton_A_21802_CDS 7 158 1 158 PF00407.19 Bet_v_1 Domain 7 151 151 67.3 1.4e-18 1 CL0209
Cotton_A_23058_CDS 48 132 39 132 PF01657.17 Stress-antifung Family 11 95 95 45.1 1.2e-11 1 No_clan
Cotton_A_23058_CDS 152 240 146 241 PF01657.17 Stress-antifung Family 9 94 95 36.7 4.8e-09 1 No_clan
Cotton_A_23058_CDS 324 528 323 595 PF00069.25 Pkinase Domain 2 206 264 142.1 2e-41 1 CL0016
Cotton_A_24316_CDS 15 169 15 170 PF03398.14 Ist1 Family 1 163 164 146.0 9.5e-43 1 No_clan
Cotton_A_31720_CDS 167 671 167 671 PF03141.16 Methyltransf_29 Family 1 506 506 772.1 2.2e-232 1 CL0063
Cotton_A_13841_CDS 202 276 201 276 PF00544.19 Pec_lyase_C Domain 136 211 211 30.8 2.1e-07 1 CL0268
Cotton_A_33336_CDS 295 341 295 341 PF01344.25 Kelch_1 Repeat 1 46 46 44.5 8.4e-12 1 CL0186
Cotton_A_33336_CDS 343 392 343 392 PF01344.25 Kelch_1 Repeat 1 46 46 37.8 1e-09 1 CL0186
Cotton_A_33644_CDS 125 184 125 184 PF05421.11 DUF751 Family 1 60 60 78.9 3.3e-22 1 No_clan
Cotton_A_04895_CDS 8 241 8 283 PF05368.13 NmrA Family 1 229 233 173.6 4.7e-51 1 CL0063
Cotton_A_17966_CDS 7 196 6 197 PF07837.12 FTCD_N Domain 2 175 176 170.4 3e-50 1 No_clan
Cotton_A_07836_CDS 40 89 39 90 PF00847.20 AP2 Domain 2 53 54 51.8 7.1e-14 1 CL0081
Cotton_A_34255_CDS 41 99 40 105 PF03018.14 Dirigent Family 2 65 148 40.7 1.9e-10 1 CL0650
Cotton_A_03562_CDS 71 121 70 122 PF00010.26 HLH Domain 2 52 53 30.0 3.8e-07 1 No_clan
Cotton_A_16845_CDS 143 296 142 297 PF04280.15 Tim44 Domain 2 146 147 120.8 5e-35 1 CL0051
Cotton_A_12856_CDS 86 140 86 144 PF07939.11 DUF1685 Family 1 56 60 85.8 1.2e-24 1 No_clan
Cotton_A_35149_CDS 103 329 103 330 PF02485.21 Branch Family 1 246 247 266.3 2.4e-79 1 CL0110
Cotton_A_35373_CDS 9 78 9 79 PF13417.6 GST_N_3 Domain 1 69 75 60.2 2e-16 1 CL0172
Cotton_A_21288_CDS 301 512 300 573 PF00069.25 Pkinase Domain 2 204 264 136.1 1.3e-39 1 CL0016
Cotton_A_02889_CDS 25 256 22 264 PF00139.19 Lectin_legB Domain 2 239 249 199.3 7.6e-59 1 CL0004
Cotton_A_02889_CDS 368 577 366 639 PF00069.25 Pkinase Domain 3 210 264 174.8 2.1e-51 1 CL0016
Cotton_A_11544_CDS 105 136 99 136 PF00400.32 WD40 Repeat 8 38 38 18.0 0.0039 1 CL0186
Cotton_A_11544_CDS 141 179 140 179 PF00400.32 WD40 Repeat 2 38 38 18.2 0.0033 1 CL0186
Cotton_A_11544_CDS 353 387 349 387 PF00400.32 WD40 Repeat 6 38 38 17.9 0.0043 1 CL0186
Cotton_A_04017_CDS 106 344 91 344 PF00069.25 Pkinase Domain 47 264 264 81.3 7.2e-23 1 CL0016
Cotton_A_19505_CDS 50 605 49 619 PF03169.15 OPT Family 2 518 616 498.6 2.7e-149 1 No_clan
Cotton_A_07151_CDS 151 199 150 199 PF07797.14 DUF1639 Family 2 50 50 85.1 2.2e-24 1 No_clan
Cotton_A_33172_CDS 21 447 20 448 PF00501.28 AMP-binding Family 2 422 423 306.4 2.5e-91 1 CL0378
Cotton_A_33172_CDS 456 535 456 535 PF13193.6 AMP-binding_C Domain 1 76 76 88.7 3.8e-25 1 CL0531
Cotton_A_27062_CDS 19 283 15 287 PF00069.25 Pkinase Domain 5 258 264 144.8 3.1e-42 1 CL0016
Cotton_A_02128_CDS 19 103 19 103 PF02298.17 Cu_bind_like Domain 1 84 84 76.5 1.2e-21 1 CL0026
Cotton_A_30317_CDS 11 70 4 73 PF00240.23 ubiquitin Domain 8 67 72 27.9 1.5e-06 1 CL0072
Cotton_A_29151_CDS 21 135 20 136 PF13793.6 Pribosyltran_N Domain 2 114 116 31.3 1.5e-07 1 CL0533
Cotton_A_29151_CDS 188 272 153 312 PF00156.27 Pribosyltran Domain 31 130 159 30.9 1.7e-07 1 CL0533
Cotton_A_27096_CDS 95 415 95 415 PF10250.9 O-FucT Family 1 336 336 217.3 4.4e-64 1 CL0113
Cotton_A_05616_CDS 125 339 124 339 PF14381.6 EDR1 Family 3 200 200 233.9 1.3e-69 1 CL0125
Cotton_A_05616_CDS 668 773 668 774 PF07714.17 Pkinase_Tyr Domain 1 112 259 63.2 2.1e-17 1 CL0016
Cotton_A_05616_CDS 774 887 773 887 PF07714.17 Pkinase_Tyr Domain 144 259 259 93.6 1.2e-26 1 CL0016
Cotton_A_01709_CDS 15 149 10 149 PF04690.13 YABBY Family 18 162 162 181.1 2.4e-53 1 CL0114
Cotton_A_25996_CDS 24 439 23 439 PF00909.21 Ammonium_transp Family 2 399 399 277.0 2e-82 1 No_clan
Cotton_A_22866_CDS 99 526 99 526 PF00854.21 PTR2 Family 1 395 395 344.7 6.2e-103 1 CL0015
Cotton_A_18869_CDS 103 223 102 223 PF00903.25 Glyoxalase Domain 2 128 128 82.1 3.7e-23 1 CL0104
Cotton_A_18869_CDS 235 350 233 353 PF00903.25 Glyoxalase Domain 4 125 128 56.7 2.7e-15 1 CL0104
Cotton_A_28206_CDS 10 53 9 57 PF00319.18 SRF-TF Domain 2 45 48 51.0 7.3e-14 1 No_clan
Cotton_A_09945_CDS 35 298 35 300 PF00067.22 p450 Domain 1 269 463 111.3 4.7e-32 1 No_clan
Cotton_A_15791_CDS 58 300 44 331 PF09790.9 Hyccin Family 83 273 321 139.5 1.2e-40 1 No_clan
Cotton_A_24785_CDS 17 361 17 362 PF06068.13 TIP49 Domain 1 350 351 543.6 2.1e-163 1 CL0023
Cotton_A_24785_CDS 367 432 367 432 PF17856.1 TIP49_C Domain 1 66 66 92.7 1.1e-26 1 CL0671
Cotton_A_08722_CDS 109 213 108 216 PF00989.25 PAS Domain 2 107 113 47.7 1.3e-12 1 CL0183
Cotton_A_08722_CDS 462 714 462 714 PF07714.17 Pkinase_Tyr Domain 1 259 259 222.3 6.3e-66 1 CL0016
Cotton_A_10400_CDS 407 466 405 477 PF00575.23 S1 Domain 3 62 75 33.7 3.5e-08 1 CL0021
Cotton_A_34342_CDS 172 199 172 201 PF13606.6 Ank_3 Repeat 1 29 31 18.5 0.0019 1 CL0465
Cotton_A_34342_CDS 213 302 212 302 PF12796.7 Ank_2 Repeat 5 83 83 48.1 1.3e-12 1 CL0465
Cotton_A_34342_CDS 307 356 306 360 PF13637.6 Ank_4 Repeat 2 52 55 26.3 7.9e-06 1 CL0465
Cotton_A_34342_CDS 403 446 400 446 PF13637.6 Ank_4 Repeat 11 55 55 42.8 5.3e-11 1 CL0465
Cotton_A_06100_CDS 375 444 375 445 PF00076.22 RRM_1 Domain 1 69 70 62.8 2e-17 1 CL0221
Cotton_A_06100_CDS 511 570 509 571 PF00076.22 RRM_1 Domain 14 69 70 21.0 0.00021 1 CL0221
Cotton_A_12868_CDS 17 160 17 161 PF06201.13 PITH Domain 1 151 152 138.0 2.8e-40 1 CL0202
Cotton_A_38900_CDS 116 184 113 185 PF16135.5 Jas Family 5 75 76 66.9 1.3e-18 1 No_clan
Cotton_A_21898_CDS 5 39 5 40 PF00320.27 GATA Domain 1 35 36 62.2 2.4e-17 1 CL0167
Cotton_A_26559_CDS 222 267 222 267 PF10533.9 Plant_zn_clust Domain 1 49 49 64.9 4.7e-18 1 No_clan
Cotton_A_26559_CDS 271 328 270 328 PF03106.15 WRKY Domain 2 59 59 91.6 2.7e-26 1 CL0274
Cotton_A_12834_CDS 10 70 10 70 PF13921.6 Myb_DNA-bind_6 Domain 1 60 60 48.3 9.1e-13 1 CL0123
Cotton_A_12834_CDS 406 654 406 654 PF11831.8 Myb_Cef Family 1 238 238 207.0 3.1e-61 1 No_clan
Cotton_A_17998_CDS 323 456 304 461 PF00520.31 Ion_trans Family 29 153 245 75.3 4.1e-21 1 CL0030
Cotton_A_19789_CDS 87 243 83 243 PF00753.27 Lactamase_B Domain 7 197 197 56.3 4.3e-15 1 CL0381
Cotton_A_19789_CDS 244 328 244 328 PF16123.5 HAGH_C Family 1 80 80 87.8 5e-25 1 CL0381
Cotton_A_07339_CDS 116 364 114 367 PF01040.18 UbiA Family 2 251 252 164.5 2.7e-48 1 CL0613
Cotton_A_08350_CDS 460 495 459 496 PF03638.15 TCR Domain 2 37 38 44.5 1.3e-11 1 No_clan
Cotton_A_08350_CDS 545 581 545 582 PF03638.15 TCR Domain 1 37 38 46.0 4.8e-12 1 No_clan
Cotton_A_17895_CDS 342 385 340 385 PF08387.10 FBD Family 3 46 46 30.7 2e-07 1 No_clan
Cotton_A_07788_CDS 275 320 271 320 PF00010.26 HLH Domain 6 53 53 39.8 3.3e-10 1 No_clan
Cotton_A_40277_CDS 36 81 35 82 PF00415.18 RCC1 Repeat 4 49 50 51.9 8.7e-14 1 CL0186
Cotton_A_40277_CDS 88 135 88 135 PF00415.18 RCC1 Repeat 3 50 50 54.2 1.7e-14 1 CL0186
Cotton_A_40277_CDS 138 187 138 187 PF00415.18 RCC1 Repeat 1 50 50 54.8 1.1e-14 1 CL0186
Cotton_A_40277_CDS 190 242 190 244 PF00415.18 RCC1 Repeat 1 48 50 52.0 7.8e-14 1 CL0186
Cotton_A_40277_CDS 248 296 247 296 PF00415.18 RCC1 Repeat 2 50 50 52.6 5.1e-14 1 CL0186
Cotton_A_40277_CDS 299 351 299 351 PF00415.18 RCC1 Repeat 1 50 50 47.5 2e-12 1 CL0186
Cotton_A_40277_CDS 356 386 354 397 PF00415.18 RCC1 Repeat 3 33 50 33.6 4.5e-08 1 CL0186
Cotton_A_17988_CDS 106 271 106 271 PF06424.12 PRP1_N Domain 1 148 148 192.8 3.9e-57 1 No_clan
Cotton_A_17988_CDS 793 820 792 825 PF13181.6 TPR_8 Repeat 2 29 34 12.0 0.2 1 CL0020
Cotton_A_31685_CDS 53 164 51 165 PF01398.21 JAB Family 3 117 118 118.6 1.3e-34 1 CL0366
Cotton_A_31685_CDS 252 329 252 329 PF18323.1 CSN5_C Domain 1 89 89 85.1 4.9e-24 1 No_clan
Cotton_A_40470_CDS 31 153 31 159 PF07651.16 ANTH Domain 1 125 277 99.8 1.3e-28 1 CL0009
Cotton_A_31683_CDS 239 455 237 458 PF00009.27 GTP_EFTU Domain 4 191 194 157.4 3e-46 1 CL0023
Cotton_A_31683_CDS 565 618 555 623 PF03143.17 GTP_EFTU_D3 Domain 30 83 112 13.3 0.075 1 No_clan
Cotton_A_31683_CDS 643 683 632 684 PF03143.17 GTP_EFTU_D3 Domain 71 111 112 30.0 5e-07 1 No_clan
Cotton_A_25504_CDS 1 423 1 429 PF00067.22 p450 Domain 41 457 463 273.3 3.5e-81 1 No_clan
Cotton_A_14310_CDS 80 297 79 301 PF00682.19 HMGL-like Domain 2 214 264 133.6 8.9e-39 1 CL0036
Cotton_A_21792_CDS 44 192 42 203 PF00501.28 AMP-binding Family 49 184 423 64.6 6.2e-18 1 CL0378
Cotton_A_18492_CDS 90 381 90 383 PF07887.11 Calmodulin_bind Family 1 290 292 385.0 2.1e-115 1 No_clan
Cotton_A_37180_CDS 15 87 2 87 PF13966.6 zf-RVT Domain 13 85 85 54.4 1.6e-14 1 No_clan
Cotton_A_22560_CDS 1 114 1 116 PF08284.11 RVP_2 Domain 21 134 136 99.6 1.1e-28 1 CL0129
Cotton_A_22560_CDS 122 272 113 273 PF00078.27 RVT_1 Family 15 221 222 93.4 1.4e-26 1 CL0027
Cotton_A_22560_CDS 336 390 336 393 PF17919.1 RT_RNaseH_2 Domain 1 60 100 53.2 2.3e-14 1 CL0219
Cotton_A_22560_CDS 500 551 498 551 PF17921.1 Integrase_H2C2 Domain 3 52 58 57.5 1.1e-15 1 CL0361
Cotton_A_02413_CDS 39 83 39 84 PF00249.31 Myb_DNA-binding Domain 1 45 46 41.9 8.1e-11 1 CL0123
Cotton_A_22055_CDS 97 235 95 237 PF04043.15 PMEI Domain 4 152 154 50.0 4.1e-13 1 No_clan
Cotton_A_07876_CDS 320 369 319 369 PF00249.31 Myb_DNA-binding Domain 2 46 46 29.7 5.2e-07 1 CL0123
Cotton_A_25355_CDS 172 225 162 226 PF00013.29 KH_1 Domain 9 65 66 36.1 4.3e-09 1 CL0007
Cotton_A_09682_CDS 37 103 23 106 PF01248.26 Ribosomal_L7Ae Domain 27 92 95 61.2 6e-17 1 CL0101
Cotton_A_09930_CDS 5 125 4 125 PF03311.14 Cornichon Family 2 122 122 134.8 1.8e-39 1 No_clan
Cotton_A_01073_CDS 403 579 399 580 PF01103.23 Bac_surface_Ag Family 134 323 324 92.1 4.6e-26 1 CL0193
Cotton_A_23359_CDS 4 101 4 109 PF00168.30 C2 Domain 1 95 103 70.4 1.3e-19 1 CL0154
Cotton_A_31758_CDS 16 122 15 122 PF01655.18 Ribosomal_L32e Family 2 108 108 170.2 1.4e-50 1 No_clan
Cotton_A_11417_CDS 2 53 1 53 PF04504.14 DUF573 Family 44 95 95 50.3 2.8e-13 1 CL0123
Cotton_A_04337_CDS 2 421 1 430 PF00067.22 p450 Domain 30 454 463 303.1 3.2e-90 1 No_clan
Cotton_A_12563_CDS 112 185 87 186 PF14380.6 WAK_assoc Domain 30 102 104 57.0 2.7e-15 1 No_clan
Cotton_A_12563_CDS 282 486 279 498 PF00069.25 Pkinase Domain 4 198 264 153.2 8.3e-45 1 CL0016
Cotton_A_26488_CDS 106 171 103 182 PF10497.9 zf-4CXXC_R1 Domain 5 78 99 23.5 4.7e-05 1 No_clan
Cotton_A_11959_CDS 6 94 4 95 PF00166.21 Cpn10 Domain 3 92 93 87.9 3.5e-25 1 CL0296
Cotton_A_01888_CDS 403 478 402 517 PF01926.23 MMR_HSR1 Family 2 64 114 38.0 1.5e-09 1 CL0023
Cotton_A_30924_CDS 90 108 90 108 PF08137.12 DVL Family 1 19 19 43.0 2.8e-11 1 No_clan
Cotton_A_40122_CDS 115 190 114 190 PF11523.8 DUF3223 Family 2 75 75 99.4 1.6e-28 1 No_clan
Cotton_A_24123_CDS 107 162 107 163 PF00046.29 Homeodomain Domain 1 56 57 66.9 9.9e-19 1 CL0123
Cotton_A_24123_CDS 302 527 302 527 PF01852.19 START Domain 1 209 209 188.6 8.8e-56 1 CL0209
Cotton_A_34395_CDS 43 314 43 315 PF13324.6 GCIP Family 1 260 261 271.3 9.2e-81 1 No_clan
Cotton_A_11534_CDS 12 73 1 73 PF01657.17 Stress-antifung Family 37 95 95 42.0 1.1e-10 1 No_clan
Cotton_A_11534_CDS 119 178 74 179 PF01657.17 Stress-antifung Family 36 94 95 40.5 3.1e-10 1 No_clan
Cotton_A_11534_CDS 262 528 261 531 PF00069.25 Pkinase Domain 2 259 264 153.1 9.2e-45 1 CL0016
Cotton_A_14039_CDS 515 627 514 632 PF00924.18 MS_channel Family 2 114 206 52.6 4.2e-14 1 No_clan
Cotton_A_39969_CDS 44 152 44 153 PF14226.6 DIOX_N Family 1 117 118 91.8 4.9e-26 1 CL0029
Cotton_A_39969_CDS 199 240 197 243 PF03171.20 2OG-FeII_Oxy Domain 3 44 101 43.2 4.3e-11 1 CL0029
Cotton_A_34825_CDS 62 95 56 95 PF00400.32 WD40 Repeat 7 38 38 22.0 0.00022 1 CL0186
Cotton_A_34825_CDS 102 137 99 137 PF00400.32 WD40 Repeat 4 38 38 28.7 1.6e-06 1 CL0186
Cotton_A_34825_CDS 282 316 281 317 PF00400.32 WD40 Repeat 2 37 38 23.2 8.7e-05 1 CL0186
Cotton_A_34825_CDS 328 360 318 360 PF00400.32 WD40 Repeat 12 38 38 19.8 0.0011 1 CL0186
Cotton_A_34825_CDS 361 447 361 447 PF04158.14 Sof1 Family 1 87 87 103.3 6.4e-30 1 No_clan
Cotton_A_06256_CDS 15 141 15 141 PF02365.15 NAM Family 1 126 126 141.9 1.9e-41 1 No_clan
Cotton_A_23673_CDS 227 253 212 253 PF00400.32 WD40 Repeat 12 38 38 14.6 0.047 1 CL0186
Cotton_A_23673_CDS 265 296 257 296 PF00400.32 WD40 Repeat 9 38 38 16.8 0.009 1 CL0186
Cotton_A_23673_CDS 307 342 304 342 PF00400.32 WD40 Repeat 4 38 38 20.1 0.00086 1 CL0186
Cotton_A_23673_CDS 383 424 381 424 PF00400.32 WD40 Repeat 4 38 38 12.5 0.21 1 CL0186
Cotton_A_23673_CDS 430 465 428 466 PF00400.32 WD40 Repeat 3 37 38 21.0 0.00045 1 CL0186
Cotton_A_20768_CDS 9 101 2 125 PF00790.19 VHS Domain 11 114 141 89.5 1.8e-25 1 CL0009
Cotton_A_20768_CDS 188 261 185 261 PF03127.14 GAT Domain 4 77 77 54.6 1e-14 1 No_clan
Cotton_A_24169_CDS 356 404 355 405 PF17780.1 OCRE Domain 3 51 52 62.5 2.8e-17 1 No_clan
Cotton_A_05444_CDS 112 215 111 215 PF03168.13 LEA_2 Domain 2 101 101 30.4 4.2e-07 1 CL0159
Cotton_A_00901_CDS 41 434 38 464 PF03222.13 Trp_Tyr_perm Family 4 364 394 153.2 1e-44 1 CL0062
Cotton_A_34689_CDS 221 538 221 538 PF01501.20 Glyco_transf_8 Family 1 256 256 310.7 7.7e-93 1 CL0110
Cotton_A_16537_CDS 7 317 7 317 PF00332.18 Glyco_hydro_17 Domain 1 313 313 408.1 3e-122 1 CL0058
Cotton_A_02426_CDS 29 122 27 123 PF00069.25 Pkinase Domain 15 107 264 61.7 6.6e-17 1 CL0016
Cotton_A_38942_CDS 11 319 8 331 PF01237.18 Oxysterol_BP Family 17 357 373 158.5 2.1e-46 1 No_clan
Cotton_A_32490_CDS 4 117 1 118 PF00125.24 Histone Domain 15 130 131 82.2 4.2e-23 1 CL0012
Cotton_A_29867_CDS 44 166 44 187 PF04652.16 Vta1 Family 1 121 145 55.3 6.8e-15 1 No_clan
Cotton_A_29867_CDS 323 433 321 433 PF14288.6 FKS1_dom1 Family 3 129 129 126.7 6.5e-37 1 No_clan
Cotton_A_29867_CDS 939 1170 938 1172 PF02364.15 Glucan_synthase Family 2 250 819 191.6 2.1e-56 1 CL0111
Cotton_A_29867_CDS 1171 1590 1168 1595 PF02364.15 Glucan_synthase Family 297 731 819 497.7 6.2e-149 1 CL0111
Cotton_A_30008_CDS 36 87 35 108 PF05617.11 Prolamin_like Domain 2 52 71 36.4 4.5e-09 1 CL0482
Cotton_A_21371_CDS 159 391 152 392 PF00931.22 NB-ARC Domain 9 251 252 154.8 2.3e-45 1 CL0023
Cotton_A_34275_CDS 83 148 69 148 PF13714.6 PEP_mutase Domain 15 79 239 37.5 1.7e-09 1 CL0151
Cotton_A_34570_CDS 133 272 131 272 PF04116.13 FA_hydroxylase Family 3 133 133 75.9 3.5e-21 1 No_clan
Cotton_A_34570_CDS 450 569 450 574 PF12076.8 Wax2_C Domain 1 119 164 153.7 3.3e-45 1 No_clan
Cotton_A_33701_CDS 40 344 39 345 PF01301.19 Glyco_hydro_35 Domain 2 315 316 388.8 2.3e-116 1 CL0058
Cotton_A_33701_CDS 352 422 352 423 PF17834.1 GHD Domain 1 71 72 86.4 1e-24 1 CL0369
Cotton_A_18120_CDS 96 143 96 145 PF13041.6 PPR_2 Repeat 1 48 50 37.1 2.6e-09 1 CL0020
Cotton_A_18120_CDS 170 193 169 196 PF01535.20 PPR Family 2 25 31 12.4 0.15 1 CL0020
Cotton_A_18120_CDS 197 246 197 246 PF13041.6 PPR_2 Repeat 1 50 50 30.2 3.7e-07 1 CL0020
Cotton_A_18120_CDS 289 309 286 312 PF01535.20 PPR Family 4 24 31 10.4 0.62 1 CL0020
Cotton_A_18120_CDS 314 362 314 363 PF13041.6 PPR_2 Repeat 1 49 50 50.3 2e-13 1 CL0020
Cotton_A_18120_CDS 380 428 380 429 PF13041.6 PPR_2 Repeat 1 49 50 51.9 6.2e-14 1 CL0020
Cotton_A_18120_CDS 482 528 481 530 PF13041.6 PPR_2 Repeat 2 48 50 34.0 2.5e-08 1 CL0020
Cotton_A_18120_CDS 583 630 582 631 PF13041.6 PPR_2 Repeat 2 49 50 47.6 1.4e-12 1 CL0020
Cotton_A_18120_CDS 657 682 656 685 PF01535.20 PPR Family 2 27 31 17.4 0.0039 1 CL0020
Cotton_A_08612_CDS 9 387 8 387 PF00079.20 Serpin Domain 2 371 371 339.5 2.7e-101 1 No_clan
Cotton_A_06724_CDS 19 293 18 294 PF01263.20 Aldose_epim Family 2 300 301 238.0 1.4e-70 1 CL0103
Cotton_A_37482_CDS 25 204 23 204 PF04525.12 LOR Domain 3 187 187 205.7 4.5e-61 1 CL0395
Cotton_A_13105_CDS 577 909 577 909 PF03372.23 Exo_endo_phos Domain 1 233 233 58.1 8.9e-16 1 CL0530
Cotton_A_16980_CDS 25 333 24 334 PF02574.16 S-methyl_trans Family 2 267 268 257.6 1.7e-76 1 No_clan
Cotton_A_14065_CDS 31 99 29 101 PF01363.21 FYVE Domain 3 66 68 65.5 3.4e-18 1 CL0390
Cotton_A_14065_CDS 400 648 367 659 PF00118.24 Cpn60_TCP1 Family 136 374 491 113.7 8.8e-33 1 No_clan
Cotton_A_14065_CDS 1543 1709 1535 1712 PF01504.18 PIP5K Family 10 168 274 116.5 1.3e-33 1 CL0016
Cotton_A_34634_CDS 109 209 108 213 PF04367.13 DUF502 Family 2 102 106 102.3 1.2e-29 1 No_clan
Cotton_A_25672_CDS 4 408 3 409 PF02458.15 Transferase Family 2 433 434 257.0 2.7e-76 1 CL0149
Cotton_A_10590_CDS 71 104 71 106 PF06747.13 CHCH Domain 1 33 35 33.5 3.2e-08 1 CL0351
Cotton_A_23915_CDS 19 133 19 134 PF00069.25 Pkinase Domain 1 113 264 69.0 4e-19 1 CL0016
Cotton_A_13322_CDS 39 95 38 96 PF02701.15 zf-Dof Family 2 58 59 115.5 8.8e-34 1 No_clan
Cotton_A_33492_CDS 226 305 225 305 PF08142.12 AARP2CN Domain 2 86 86 71.4 4.8e-20 1 No_clan
Cotton_A_33492_CDS 489 785 489 785 PF04950.12 RIBIOP_C Family 1 292 292 388.4 2.2e-116 1 CL0575
Cotton_A_09746_CDS 238 343 236 344 PF01399.27 PCI Domain 3 104 105 42.0 1e-10 1 CL0123
Cotton_A_36691_CDS 2 237 1 238 PF00141.23 peroxidase Domain 14 228 229 235.6 5.5e-70 1 CL0617
Cotton_A_31238_CDS 249 421 246 422 PF16035.5 Chalcone_2 Domain 4 203 204 67.3 1.5e-18 1 CL0560
Cotton_A_35973_CDS 38 357 38 358 PF00067.22 p450 Domain 1 309 463 119.0 2.2e-34 1 No_clan
Cotton_A_29214_CDS 6 91 5 97 PF12796.7 Ank_2 Repeat 2 73 83 34.6 2.1e-08 1 CL0465
Cotton_A_00312_CDS 60 256 60 257 PF00504.21 Chloroa_b-bind Family 1 160 161 176.1 7.6e-52 1 No_clan
Cotton_A_26415_CDS 108 151 107 152 PF13639.6 zf-RING_2 Domain 2 43 44 34.7 1.6e-08 1 CL0229
Cotton_A_25369_CDS 264 300 262 300 PF00400.32 WD40 Repeat 3 38 38 14.3 0.056 1 CL0186
Cotton_A_10395_CDS 16 203 7 213 PF15251.6 DUF4588 Family 54 228 252 27.3 2.7e-06 1 No_clan
Cotton_A_28353_CDS 126 183 116 215 PF03351.17 DOMON Domain 14 71 125 32.9 6.3e-08 1 CL0559
Cotton_A_28353_CDS 280 389 267 393 PF03188.16 Cytochrom_B561 Family 14 131 137 26.1 7.4e-06 1 CL0328
Cotton_A_06870_CDS 71 162 71 172 PF01453.24 B_lectin Domain 1 92 105 67.0 1.8e-18 1 No_clan
Cotton_A_06870_CDS 235 314 204 317 PF00954.20 S_locus_glycop Domain 31 108 111 34.2 2.8e-08 1 No_clan
Cotton_A_14759_CDS 37 115 37 115 PF14144.6 DOG1 Family 1 77 77 97.8 3e-28 1 No_clan
Cotton_A_31249_CDS 13 113 11 130 PF00743.19 FMO-like Family 3 113 532 44.1 9.3e-12 1 CL0063
Cotton_A_12087_CDS 143 174 140 179 PF07939.11 DUF1685 Family 4 35 60 20.4 0.00032 1 No_clan
Cotton_A_20743_CDS 10 174 10 176 PF00071.22 Ras Domain 1 160 162 171.1 1.4e-50 1 CL0023
Cotton_A_39380_CDS 39 171 38 172 PF03018.14 Dirigent Family 2 147 148 103.4 9e-30 1 CL0650
Cotton_A_32469_CDS 46 330 45 330 PF01048.20 PNP_UDP_1 Domain 2 234 234 131.5 2.8e-38 1 CL0408
Cotton_A_13006_CDS 62 165 61 167 PF00168.30 C2 Domain 2 101 103 72.2 3.5e-20 1 CL0154
Cotton_A_13006_CDS 224 330 224 330 PF00168.30 C2 Domain 1 103 103 72.6 2.7e-20 1 CL0154
Cotton_A_13006_CDS 388 501 388 501 PF00168.30 C2 Domain 1 103 103 82.7 1.8e-23 1 CL0154
Cotton_A_13006_CDS 646 801 646 801 PF08372.10 PRT_C Family 1 156 156 257.0 5.2e-77 1 CL0484
Cotton_A_30327_CDS 400 424 400 424 PF07557.11 Shugoshin_C Family 1 24 25 36.9 2.3e-09 1 No_clan
Cotton_A_27695_CDS 2 43 1 44 PF01344.25 Kelch_1 Repeat 5 44 46 39.3 3.5e-10 1 CL0186
Cotton_A_31257_CDS 58 194 57 195 PF00781.24 DAGK_cat Family 2 125 126 104.1 3.9e-30 1 CL0240
Cotton_A_18605_CDS 122 203 115 204 PF01245.20 Ribosomal_L19 Family 6 88 111 75.7 2.5e-21 1 CL0107
Cotton_A_03176_CDS 9 31 9 31 PF10584.9 Proteasome_A_N Domain 1 23 23 55.7 2.7e-15 1 CL0052
Cotton_A_03176_CDS 35 220 32 220 PF00227.26 Proteasome Domain 3 190 190 187.9 1.3e-55 1 CL0052
Cotton_A_36744_CDS 1 154 1 154 PF00407.19 Bet_v_1 Domain 1 151 151 72.0 4.8e-20 1 CL0209
Cotton_A_26371_CDS 57 125 57 125 PF02672.15 CP12 Family 1 70 70 94.4 5.1e-27 1 No_clan
Cotton_A_14311_CDS 9 622 9 622 PF03547.18 Mem_trans Family 1 387 387 617.7 4.9e-186 1 CL0064
Cotton_A_27539_CDS 28 136 26 137 PF13947.6 GUB_WAK_bind Domain 3 105 106 32.0 1.6e-07 1 No_clan
Cotton_A_27539_CDS 306 574 305 576 PF00069.25 Pkinase Domain 2 260 264 162.6 1.2e-47 1 CL0016
Cotton_A_27395_CDS 6 84 6 85 PF05922.16 Inhibitor_I9 Domain 1 81 82 57.4 1.8e-15 1 CL0570
Cotton_A_27395_CDS 110 481 110 506 PF00082.22 Peptidase_S8 Domain 1 284 298 165.4 1.7e-48 1 No_clan
Cotton_A_27395_CDS 560 655 560 655 PF17766.1 fn3_6 Domain 1 99 99 91.4 3.1e-26 1 CL0159
Cotton_A_35345_CDS 42 283 41 290 PF00139.19 Lectin_legB Domain 2 241 249 201.0 2.2e-59 1 CL0004
Cotton_A_35345_CDS 369 637 367 640 PF00069.25 Pkinase Domain 3 259 264 137.5 5e-40 1 CL0016
Cotton_A_04382_CDS 2 126 1 147 PF07468.11 Agglutinin Domain 2 121 153 68.4 7.6e-19 1 CL0066
Cotton_A_23048_CDS 38 353 38 353 PF00332.18 Glyco_hydro_17 Domain 1 313 313 308.5 6.4e-92 1 CL0058
Cotton_A_21260_CDS 13 111 11 114 PF01283.19 Ribosomal_S26e Family 7 105 108 168.8 3.8e-50 1 No_clan
Cotton_A_30587_CDS 160 440 159 441 PF02666.15 PS_Dcarbxylase Family 2 199 200 209.3 4e-62 1 No_clan
Cotton_A_30587_CDS 520 683 519 683 PF00551.19 Formyl_trans_N Domain 2 181 181 75.5 4.2e-21 1 No_clan
Cotton_A_14879_CDS 121 285 119 286 PF00622.28 SPRY Family 3 119 120 25.4 1.2e-05 1 CL0004
Cotton_A_00241_CDS 6 71 6 72 PF00313.22 CSD Domain 1 65 66 87.5 4e-25 1 CL0021
Cotton_A_00241_CDS 107 121 106 123 PF00098.23 zf-CCHC Domain 2 16 18 30.7 2.1e-07 1 CL0511
Cotton_A_00241_CDS 134 148 132 149 PF00098.23 zf-CCHC Domain 3 17 18 32.6 5.3e-08 1 CL0511
Cotton_A_25971_CDS 188 515 188 516 PF12043.8 DUF3527 Family 1 350 351 317.8 1.2e-94 1 CL0395
Cotton_A_25827_CDS 33 122 33 125 PF01190.17 Pollen_Ole_e_I Family 1 94 99 73.0 2.1e-20 1 CL0287
Cotton_A_32724_CDS 41 170 31 193 PF10185.9 Mesd Family 16 144 155 30.5 3.1e-07 1 No_clan
Cotton_A_03606_CDS 12 62 11 63 PF00847.20 AP2 Domain 2 53 54 54.6 9.5e-15 1 CL0081
Cotton_A_21839_CDS 123 409 114 411 PF01733.18 Nucleoside_tran Family 7 307 309 114.7 5.3e-33 1 CL0015
Cotton_A_00390_CDS 188 311 188 311 PF07526.11 POX Domain 1 136 136 124.8 3.6e-36 1 No_clan
Cotton_A_00390_CDS 375 414 375 414 PF05920.11 Homeobox_KN Family 1 40 40 65.4 3e-18 1 CL0123
Cotton_A_08005_CDS 102 460 100 460 PF00155.21 Aminotran_1_2 Domain 3 363 363 198.2 2.2e-58 1 CL0061
Cotton_A_11569_CDS 8 168 8 169 PF00071.22 Ras Domain 1 161 162 202.1 3.9e-60 1 CL0023
Cotton_A_29125_CDS 18 174 16 179 PF10358.9 NT-C2 Family 6 141 146 47.4 1.6e-12 1 CL0154
Cotton_A_19057_CDS 78 167 78 177 PF01453.24 B_lectin Domain 1 94 105 52.5 5.7e-14 1 No_clan
Cotton_A_19057_CDS 245 315 208 317 PF00954.20 S_locus_glycop Domain 40 108 111 29.9 6.2e-07 1 No_clan
Cotton_A_19057_CDS 506 763 503 766 PF00069.25 Pkinase Domain 5 258 264 151.2 3.4e-44 1 CL0016
Cotton_A_31237_CDS 32 477 32 477 PF00759.19 Glyco_hydro_9 Domain 1 411 411 444.9 3.9e-133 1 CL0059
Cotton_A_32178_CDS 57 158 57 167 PF14226.6 DIOX_N Family 1 103 118 91.1 8e-26 1 CL0029
Cotton_A_32178_CDS 223 317 220 318 PF03171.20 2OG-FeII_Oxy Domain 4 99 101 100.4 6.7e-29 1 CL0029
Cotton_A_14382_CDS 17 561 16 565 PF03321.13 GH3 Family 2 523 527 624.4 1.8e-187 1 CL0378
Cotton_A_27425_CDS 69 427 68 429 PF07690.16 MFS_1 Family 2 351 353 82.4 2.9e-23 1 CL0015
Cotton_A_05664_CDS 46 158 14 161 PF04043.15 PMEI Domain 39 151 154 56.3 4.4e-15 1 No_clan
Cotton_A_05664_CDS 212 509 212 509 PF01095.19 Pectinesterase Family 1 298 298 503.3 1.4e-151 1 CL0268
Cotton_A_33315_CDS 80 256 80 259 PF00406.22 ADK Domain 1 148 151 165.6 8e-49 1 CL0023
Cotton_A_33315_CDS 328 569 325 570 PF09353.10 DUF1995 Domain 5 196 197 134.6 4.3e-39 1 No_clan
Cotton_A_16362_CDS 41 61 39 62 PF13516.6 LRR_6 Repeat 3 23 24 10.1 0.72 1 CL0022
Cotton_A_16362_CDS 64 82 63 84 PF13516.6 LRR_6 Repeat 2 20 24 10.0 0.76 1 CL0022
Cotton_A_16362_CDS 220 280 219 280 PF13855.6 LRR_8 Repeat 2 61 61 30.2 2.7e-07 1 CL0022
Cotton_A_16362_CDS 318 378 317 378 PF13855.6 LRR_8 Repeat 2 61 61 31.0 1.6e-07 1 CL0022
Cotton_A_16362_CDS 557 615 555 615 PF13855.6 LRR_8 Repeat 3 61 61 42.6 3.9e-11 1 CL0022
Cotton_A_16362_CDS 1165 1186 1164 1186 PF00560.33 LRR_1 Repeat 2 23 23 9.4 1.9 1 CL0022
Cotton_A_16362_CDS 1236 1294 1234 1294 PF13855.6 LRR_8 Repeat 3 61 61 34.9 9.5e-09 1 CL0022
Cotton_A_20087_CDS 13 83 5 90 PF02519.14 Auxin_inducible Family 2 66 90 41.6 1e-10 1 No_clan
Cotton_A_31100_CDS 474 523 469 527 PF02368.18 Big_2 Domain 18 68 79 24.6 1.7e-05 1 CL0159
Cotton_A_31100_CDS 1142 1204 1139 1213 PF02368.18 Big_2 Domain 6 69 79 25.3 1.1e-05 1 CL0159
Cotton_A_26821_CDS 62 167 62 178 PF14226.6 DIOX_N Family 1 104 118 87.0 1.5e-24 1 CL0029
Cotton_A_26821_CDS 220 313 215 315 PF03171.20 2OG-FeII_Oxy Domain 5 99 101 89.4 1.7e-25 1 CL0029
Cotton_A_20838_CDS 5 67 2 68 PF01486.17 K-box Family 30 92 93 67.3 9.9e-19 1 No_clan
Cotton_A_22586_CDS 5 87 5 146 PF18052.1 Rx_N Domain 1 83 93 78.3 4.1e-22 1 No_clan
Cotton_A_30375_CDS 38 76 35 84 PF05761.14 5_nucleotid Family 193 231 458 32.3 4.8e-08 1 CL0137
Cotton_A_34758_CDS 64 138 64 147 PF01715.17 IPPT Domain 1 75 228 79.5 3.1e-22 1 CL0023
Cotton_A_34758_CDS 147 245 138 250 PF01715.17 IPPT Domain 141 223 228 44.7 1.4e-11 1 CL0023
Cotton_A_01172_CDS 25 177 8 178 PF02181.23 FH2 Family 215 371 372 138.3 3.4e-40 1 No_clan
Cotton_A_10633_CDS 52 124 51 125 PF01929.17 Ribosomal_L14e Family 2 74 75 96.1 1.3e-27 1 CL0107
Cotton_A_04247_CDS 39 108 37 108 PF04739.15 AMPKBI Family 3 75 75 75.5 3e-21 1 No_clan
Cotton_A_27758_CDS 112 322 111 379 PF00481.21 PP2C Family 3 233 258 187.8 2.8e-55 1 CL0238
Cotton_A_26654_CDS 146 1053 146 1055 PF05904.11 DUF863 Family 1 927 938 972.0 4.5e-292 1 No_clan
Cotton_A_15370_CDS 99 246 96 258 PF07714.17 Pkinase_Tyr Domain 4 153 259 109.2 2.1e-31 1 CL0016
Cotton_A_31985_CDS 4 41 1 41 PF00067.22 p450 Domain 274 311 463 24.4 1.1e-05 1 No_clan
Cotton_A_14964_CDS 32 140 26 141 PF03936.16 Terpene_synth_C Domain 12 120 267 135.3 2.4e-39 1 CL0613
Cotton_A_14964_CDS 162 234 159 235 PF03936.16 Terpene_synth_C Domain 194 266 267 64.5 9.4e-18 1 CL0613
Cotton_A_00700_CDS 45 315 44 316 PF00494.19 SQS_PSY Domain 2 261 263 147.5 4.8e-43 1 CL0613
Cotton_A_15261_CDS 52 358 52 359 PF01301.19 Glyco_hydro_35 Domain 1 315 316 362.2 2.9e-108 1 CL0058
Cotton_A_15261_CDS 366 437 366 438 PF17834.1 GHD Domain 1 71 72 81.0 4.8e-23 1 CL0369
Cotton_A_15261_CDS 630 711 611 713 PF13364.6 BetaGal_dom4_5 Domain 31 112 114 23.2 7.8e-05 1 CL0202
Cotton_A_15261_CDS 761 840 761 840 PF02140.18 Gal_Lectin Domain 1 80 80 54.5 1.2e-14 1 No_clan
Cotton_A_21249_CDS 8 162 8 162 PF00252.18 Ribosomal_L16 Family 1 132 132 138.6 1.2e-40 1 No_clan
Cotton_A_09813_CDS 29 66 26 66 PF08263.12 LRRNT_2 Family 4 41 41 40.8 2.1e-10 1 No_clan
Cotton_A_09813_CDS 118 177 118 178 PF13855.6 LRR_8 Repeat 1 60 61 34.2 1.6e-08 1 CL0022
Cotton_A_09813_CDS 288 309 288 310 PF00560.33 LRR_1 Repeat 1 22 23 9.8 1.4 1 CL0022
Cotton_A_09813_CDS 335 384 335 393 PF13855.6 LRR_8 Repeat 1 50 61 27.0 2.7e-06 1 CL0022
Cotton_A_09813_CDS 696 966 695 966 PF07714.17 Pkinase_Tyr Domain 2 259 259 155.4 1.6e-45 1 CL0016
Cotton_A_11979_CDS 79 337 79 337 PF00069.25 Pkinase Domain 1 264 264 248.5 6.9e-74 1 CL0016
Cotton_A_11979_CDS 385 445 382 446 PF13499.6 EF-hand_7 Domain 4 70 71 48.1 1.1e-12 1 CL0220
Cotton_A_11979_CDS 454 517 454 517 PF13499.6 EF-hand_7 Domain 1 71 71 56.9 2.1e-15 1 CL0220
Cotton_A_30273_CDS 43 382 42 384 PF11744.8 ALMT Family 2 347 469 510.2 5.3e-153 1 CL0307
Cotton_A_30273_CDS 387 421 384 421 PF11744.8 ALMT Family 435 469 469 20.6 0.00017 1 CL0307
Cotton_A_11743_CDS 171 225 157 231 PF07714.17 Pkinase_Tyr Domain 17 74 259 28.0 1.2e-06 1 CL0016
Cotton_A_18307_CDS 5 41 4 44 PF12937.7 F-box-like Domain 2 38 48 35.4 7.4e-09 1 CL0271
Cotton_A_18307_CDS 219 312 216 368 PF07734.13 FBA_1 Family 4 100 164 32.3 8.1e-08 1 CL0162
Cotton_A_28702_CDS 49 671 49 672 PF03169.15 OPT Family 1 615 616 501.7 3.3e-150 1 No_clan
Cotton_A_06877_CDS 17 115 13 116 PF02365.15 NAM Family 9 125 126 31.2 3.5e-07 1 No_clan
Cotton_A_24829_CDS 7 116 2 117 PF06045.11 Rhamnogal_lyase Family 21 126 213 155.0 1.8e-45 1 CL0103
Cotton_A_24829_CDS 319 391 318 392 PF14686.6 fn3_3 Domain 2 74 75 90.4 4.6e-26 1 CL0287
Cotton_A_24829_CDS 405 604 405 604 PF14683.6 CBM-like Domain 1 165 165 195.7 4.8e-58 1 CL0202
Cotton_A_23170_CDS 133 260 132 260 PF16719.5 SAWADEE Domain 2 141 141 142.1 1.1e-41 1 CL0049
Cotton_A_27119_CDS 21 47 9 47 PF00400.32 WD40 Repeat 12 38 38 16.8 0.0091 1 CL0186
Cotton_A_27119_CDS 97 128 92 128 PF00400.32 WD40 Repeat 8 38 38 17.8 0.0044 1 CL0186
Cotton_A_27119_CDS 230 271 225 271 PF00400.32 WD40 Repeat 7 38 38 16.2 0.014 1 CL0186
Cotton_A_21689_CDS 5 89 5 90 PF01221.18 Dynein_light Domain 1 85 86 114.2 2.5e-33 1 No_clan
Cotton_A_20951_CDS 72 309 61 310 PF07714.17 Pkinase_Tyr Domain 14 258 259 93.5 1.2e-26 1 CL0016
Cotton_A_23857_CDS 95 519 95 519 PF00854.21 PTR2 Family 1 395 395 364.3 6.7e-109 1 CL0015
Cotton_A_09938_CDS 32 72 31 72 PF08263.12 LRRNT_2 Family 2 41 41 29.5 6.9e-07 1 No_clan
Cotton_A_09938_CDS 390 447 388 448 PF13855.6 LRR_8 Repeat 3 60 61 33.9 1.9e-08 1 CL0022
Cotton_A_09938_CDS 600 874 598 878 PF00069.25 Pkinase Domain 3 260 264 116.5 1.3e-33 1 CL0016
Cotton_A_08339_CDS 66 169 66 170 PF00011.21 HSP20 Family 1 101 102 101.1 3.2e-29 1 CL0190
Cotton_A_29391_CDS 46 283 45 285 PF00141.23 peroxidase Domain 2 226 229 259.3 3.1e-77 1 CL0617
Cotton_A_26501_CDS 11 43 5 44 PF04674.12 Phi_1 Family 175 207 276 36.4 3.4e-09 1 No_clan
Cotton_A_25078_CDS 88 305 88 306 PF07859.13 Abhydrolase_3 Domain 1 210 211 189.8 5.5e-56 1 CL0028
Cotton_A_05105_CDS 200 281 200 306 PF12066.8 DUF3546 Family 1 82 110 82.7 2e-23 1 No_clan
Cotton_A_05105_CDS 437 643 437 645 PF04959.13 ARS2 Family 1 193 195 147.8 5e-43 1 CL0361
Cotton_A_11719_CDS 1 282 1 282 PF06217.12 GAGA_bind Domain 1 295 295 381.0 7.5e-114 1 No_clan
Cotton_A_08194_CDS 74 96 73 97 PF12171.8 zf-C2H2_jaz Family 2 24 27 23.6 4.5e-05 1 CL0361
Cotton_A_08441_CDS 42 173 34 176 PF00270.29 DEAD Domain 49 173 176 49.2 4.9e-13 1 CL0023
Cotton_A_08441_CDS 209 352 199 354 PF00271.31 Helicase_C Family 12 109 111 33.2 5.1e-08 1 CL0023
Cotton_A_08441_CDS 468 745 468 761 PF02889.16 Sec63 Family 1 213 257 147.0 5.4e-43 1 No_clan
Cotton_A_19759_CDS 38 510 38 510 PF00759.19 Glyco_hydro_9 Domain 1 411 411 428.8 2.9e-128 1 CL0059
Cotton_A_30081_CDS 75 320 65 327 PF00481.21 PP2C Family 18 246 258 131.3 4.7e-38 1 CL0238
Cotton_A_36134_CDS 32 82 30 93 PF12584.8 TRAPPC10 Family 66 116 156 46.3 3.4e-12 1 CL0212
Cotton_A_10523_CDS 32 210 32 210 PF01300.18 Sua5_yciO_yrdC Family 1 179 179 157.4 2.5e-46 1 No_clan
Cotton_A_18168_CDS 1 37 1 39 PF00139.19 Lectin_legB Domain 210 247 249 33.5 3e-08 1 CL0004
Cotton_A_18168_CDS 107 308 106 374 PF00069.25 Pkinase Domain 2 198 264 155.8 1.4e-45 1 CL0016
Cotton_A_09302_CDS 10 265 10 265 PF00069.25 Pkinase Domain 1 264 264 217.7 1.7e-64 1 CL0016
Cotton_A_37513_CDS 119 162 118 162 PF13639.6 zf-RING_2 Domain 2 44 44 51.6 8.8e-14 1 CL0229
Cotton_A_36253_CDS 27 70 26 71 PF00401.20 ATP-synt_DE Domain 2 46 47 34.6 1.7e-08 1 No_clan
Cotton_A_32697_CDS 219 275 219 275 PF06886.11 TPX2 Family 1 57 57 72.5 2.4e-20 1 No_clan
Cotton_A_21625_CDS 70 123 69 123 PF14416.6 PMR5N Domain 2 53 53 71.3 6.1e-20 1 No_clan
Cotton_A_21625_CDS 124 310 124 318 PF13839.6 PC-Esterase Family 1 183 283 189.5 1.1e-55 1 CL0264
Cotton_A_21625_CDS 371 470 365 470 PF13839.6 PC-Esterase Family 182 283 283 99.7 2.4e-28 1 CL0264
Cotton_A_01137_CDS 30 79 30 79 PF03540.13 TFIID_30kDa Family 1 50 50 85.9 1.3e-24 1 CL0012
Cotton_A_24471_CDS 45 98 41 108 PF00361.20 Proton_antipo_M Family 192 246 293 22.0 8e-05 1 CL0425
Cotton_A_18639_CDS 152 198 151 199 PF13920.6 zf-C3HC4_3 Domain 2 49 50 37.5 1.6e-09 1 CL0229
Cotton_A_34642_CDS 15 234 3 235 PF00732.19 GMC_oxred_N Domain 61 295 296 74.8 7.6e-21 1 CL0063
Cotton_A_34642_CDS 309 453 309 454 PF05199.13 GMC_oxred_C Domain 1 141 144 92.5 3.4e-26 1 No_clan
Cotton_A_22384_CDS 42 88 41 88 PF13639.6 zf-RING_2 Domain 2 44 44 34.9 1.4e-08 1 CL0229
Cotton_A_00387_CDS 200 378 200 378 PF11891.8 RETICULATA-like Family 1 177 177 220.0 1.9e-65 1 No_clan
Cotton_A_04998_CDS 109 319 108 319 PF01823.19 MACPF Domain 2 209 209 115.4 3.7e-33 1 CL0293
Cotton_A_18186_CDS 25 346 25 346 PF00225.23 Kinesin Domain 1 333 333 289.0 3.8e-86 1 CL0023
Cotton_A_01722_CDS 47 145 46 145 PF00970.24 FAD_binding_6 Domain 2 99 99 105.2 1.8e-30 1 CL0076
Cotton_A_01722_CDS 155 261 155 263 PF00175.21 NAD_binding_1 Domain 1 107 109 104.5 4.5e-30 1 CL0091
Cotton_A_32339_CDS 7 31 7 32 PF01535.20 PPR Family 1 25 31 24.1 2.7e-05 1 CL0020
Cotton_A_32339_CDS 36 82 35 84 PF13041.6 PPR_2 Repeat 2 49 50 44.6 1.2e-11 1 CL0020
Cotton_A_32339_CDS 111 136 108 138 PF01535.20 PPR Family 4 29 31 10.2 0.74 1 CL0020
Cotton_A_32339_CDS 138 185 137 186 PF13041.6 PPR_2 Repeat 2 49 50 30.1 4e-07 1 CL0020
Cotton_A_32339_CDS 213 238 213 240 PF01535.20 PPR Family 4 29 31 13.0 0.097 1 CL0020
Cotton_A_32339_CDS 239 286 238 287 PF13041.6 PPR_2 Repeat 2 49 50 33.6 3.3e-08 1 CL0020
Cotton_A_32339_CDS 339 381 339 388 PF13041.6 PPR_2 Repeat 1 43 50 30.8 2.5e-07 1 CL0020
Cotton_A_32339_CDS 415 438 415 441 PF01535.20 PPR Family 4 27 31 15.7 0.013 1 CL0020
Cotton_A_32339_CDS 441 487 440 489 PF13041.6 PPR_2 Repeat 2 48 50 32.5 7e-08 1 CL0020
Cotton_A_32339_CDS 516 539 514 542 PF01535.20 PPR Family 3 26 31 18.4 0.0017 1 CL0020
Cotton_A_32339_CDS 614 738 614 738 PF14432.6 DYW_deaminase Family 1 127 127 132.3 8.7e-39 1 CL0109
Cotton_A_25319_CDS 87 510 81 512 PF00067.22 p450 Domain 26 461 463 321.0 1.2e-95 1 No_clan
Cotton_A_02485_CDS 21 209 21 209 PF01728.19 FtsJ Family 1 177 177 218.5 6.7e-65 1 CL0063
Cotton_A_28657_CDS 81 144 81 144 PF10181.9 PIG-H Family 1 72 72 53.0 2.3e-14 1 No_clan
Cotton_A_37205_CDS 7 183 5 187 PF00069.25 Pkinase Domain 3 169 264 84.7 6.8e-24 1 CL0016
Cotton_A_35581_CDS 146 353 146 354 PF00264.20 Tyrosinase Domain 1 221 222 113.6 1.6e-32 1 CL0205
Cotton_A_35581_CDS 360 411 360 411 PF12142.8 PPO1_DWL Domain 1 52 52 78.8 1.9e-22 1 No_clan
Cotton_A_35581_CDS 457 568 448 569 PF12143.8 PPO1_KFDV Domain 11 129 130 98.1 4.1e-28 1 CL0122
Cotton_A_18028_CDS 144 202 144 204 PF13812.6 PPR_3 Repeat 2 60 63 17.9 0.0024 1 CL0020
Cotton_A_18028_CDS 222 254 221 254 PF12854.7 PPR_1 Repeat 2 34 34 27.7 1.5e-06 1 CL0020
Cotton_A_18028_CDS 261 309 260 309 PF13041.6 PPR_2 Repeat 2 50 50 59.4 3e-16 1 CL0020
Cotton_A_18028_CDS 334 357 333 362 PF01535.20 PPR Family 2 25 31 24.7 1.8e-05 1 CL0020
Cotton_A_18028_CDS 365 413 365 413 PF13041.6 PPR_2 Repeat 1 50 50 55.8 3.8e-15 1 CL0020
Cotton_A_18028_CDS 434 482 434 483 PF13041.6 PPR_2 Repeat 1 49 50 50.1 2.3e-13 1 CL0020
Cotton_A_18028_CDS 484 604 479 609 PF17177.4 PPR_long Domain 68 188 212 38.1 1e-09 1 CL0020
Cotton_A_18028_CDS 606 638 605 638 PF12854.7 PPR_1 Repeat 2 34 34 47.1 1.4e-12 1 CL0020
Cotton_A_15930_CDS 7 83 7 90 PF00241.20 Cofilin_ADF Domain 1 74 121 64.0 1e-17 1 CL0092
Cotton_A_16771_CDS 37 401 35 401 PF00155.21 Aminotran_1_2 Domain 3 363 363 193.2 7.1e-57 1 CL0061
Cotton_A_20559_CDS 89 275 88 275 PF11721.8 Malectin Domain 2 165 165 133.9 5.5e-39 1 CL0202
Cotton_A_20559_CDS 354 560 352 568 PF07714.17 Pkinase_Tyr Domain 3 211 259 163.5 5.3e-48 1 CL0016
Cotton_A_00026_CDS 122 545 120 546 PF00654.20 Voltage_CLC Family 3 353 354 327.4 1.1e-97 1 No_clan
Cotton_A_00026_CDS 697 743 691 746 PF00571.28 CBS Domain 6 52 57 30.7 3.3e-07 1 No_clan
Cotton_A_22942_CDS 20 82 15 83 PF01775.17 Ribosomal_L18A Domain 58 120 121 90.7 7.2e-26 1 No_clan
Cotton_A_32359_CDS 50 414 48 414 PF00155.21 Aminotran_1_2 Domain 3 363 363 263.0 4.3e-78 1 CL0061
Cotton_A_36304_CDS 25 473 19 474 PF00999.21 Na_H_Exchanger Family 6 380 381 179.7 7.2e-53 1 CL0064
Cotton_A_18839_CDS 28 69 27 70 PF13639.6 zf-RING_2 Domain 2 43 44 33.2 5e-08 1 CL0229
Cotton_A_06250_CDS 453 532 453 532 PF13771.6 zf-HC5HC2H Domain 1 90 90 43.7 2.5e-11 1 CL0390
Cotton_A_06250_CDS 658 793 658 793 PF00004.29 AAA Domain 1 132 132 128.6 1.9e-37 1 CL0023
Cotton_A_06250_CDS 819 851 817 861 PF17862.1 AAA_lid_3 Domain 4 36 45 29.8 3.9e-07 1 CL0671
Cotton_A_23637_CDS 34 114 34 114 PF02298.17 Cu_bind_like Domain 1 84 84 83.4 8.3e-24 1 CL0026
Cotton_A_20380_CDS 99 121 99 121 PF00560.33 LRR_1 Repeat 1 23 23 12.0 0.25 1 CL0022
Cotton_A_00285_CDS 1 73 1 85 PF13561.6 adh_short_C2 Domain 99 175 234 47.5 1.6e-12 1 CL0063
Cotton_A_37764_CDS 25 129 25 181 PF00561.20 Abhydrolase_1 Domain 1 107 257 90.0 1.9e-25 1 CL0028
Cotton_A_17247_CDS 150 381 146 382 PF00931.22 NB-ARC Domain 6 251 252 148.9 1.4e-43 1 CL0023
Cotton_A_17247_CDS 515 572 515 573 PF13855.6 LRR_8 Repeat 1 59 61 47.1 1.5e-12 1 CL0022
Cotton_A_22039_CDS 8 192 7 192 PF00025.21 Arf Domain 2 175 175 217.4 8.8e-65 1 CL0023
Cotton_A_01065_CDS 43 417 43 417 PF03140.15 DUF247 Family 1 397 397 334.3 1.1e-99 1 No_clan
Cotton_A_12609_CDS 33 74 32 76 PF01585.23 G-patch Family 2 43 45 43.2 2.6e-11 1 CL0449
Cotton_A_33896_CDS 254 324 254 326 PF04564.15 U-box Domain 1 71 73 75.3 3e-21 1 CL0229
Cotton_A_33896_CDS 377 416 377 417 PF00514.23 Arm Repeat 1 40 41 36.9 2.4e-09 1 CL0020
Cotton_A_33896_CDS 460 498 460 499 PF00514.23 Arm Repeat 2 40 41 28.7 9.5e-07 1 CL0020
Cotton_A_33896_CDS 500 536 500 540 PF00514.23 Arm Repeat 1 37 41 23.0 5.7e-05 1 CL0020
Cotton_A_28338_CDS 265 394 249 430 PF00201.18 UDPGT Family 276 380 499 68.8 3.9e-19 1 CL0113
Cotton_A_17875_CDS 141 473 137 476 PF01619.18 Pro_dh Family 5 292 296 247.3 2.4e-73 1 CL0086
Cotton_A_10852_CDS 45 248 43 248 PF00161.19 RIP Domain 3 196 196 126.5 9.4e-37 1 No_clan
Cotton_A_10852_CDS 340 458 336 458 PF00652.22 Ricin_B_lectin Domain 6 127 127 69.2 3.7e-19 1 CL0066
Cotton_A_10852_CDS 470 553 467 562 PF00652.22 Ricin_B_lectin Domain 4 96 127 45.6 7.4e-12 1 CL0066
Cotton_A_23987_CDS 33 57 32 58 PF13912.6 zf-C2H2_6 Domain 2 26 27 25.6 8.5e-06 1 CL0361
Cotton_A_27944_CDS 85 233 84 236 PF00275.20 EPSP_synthase Family 2 145 417 147.9 3.4e-43 1 CL0290
Cotton_A_18310_CDS 135 291 129 291 PF02622.15 DUF179 Family 7 160 160 102.9 1.6e-29 1 No_clan
Cotton_A_12862_CDS 12 188 11 189 PF02309.16 AUX_IAA Family 2 235 237 197.8 2.4e-58 1 CL0072
Cotton_A_18938_CDS 211 276 211 277 PF00462.24 Glutaredoxin Domain 1 59 60 39.1 6.5e-10 1 CL0172
Cotton_A_30821_CDS 258 433 258 441 PF07059.12 DUF1336 Family 1 167 229 113.3 1.8e-32 1 No_clan
Cotton_A_20834_CDS 52 516 52 516 PF00171.22 Aldedh Family 1 462 462 474.5 2.7e-142 1 CL0099
Cotton_A_28718_CDS 54 200 53 200 PF00190.22 Cupin_1 Domain 2 151 151 115.3 1.8e-33 1 CL0029
Cotton_A_34233_CDS 123 368 121 369 PF00348.17 polyprenyl_synt Domain 3 255 256 252.6 3e-75 1 CL0613
Cotton_A_27198_CDS 134 314 107 351 PF03372.23 Exo_endo_phos Domain 14 173 233 37.3 2.1e-09 1 CL0530
Cotton_A_29211_CDS 18 94 17 95 PF09340.10 NuA4 Family 2 78 79 90.5 4.6e-26 1 No_clan
Cotton_A_04776_CDS 6 225 5 225 PF04157.16 EAP30 Family 2 236 236 261.1 7.4e-78 1 CL0123
Cotton_A_36061_CDS 6 138 5 138 PF00407.19 Bet_v_1 Domain 2 137 151 151.9 1.2e-44 1 CL0209
Cotton_A_04816_CDS 15 145 8 145 PF04885.13 Stig1 Family 5 139 139 143.4 6.1e-42 1 No_clan
Cotton_A_02330_CDS 2 43 2 43 PF18253.1 HipN Domain 1 42 42 64.8 4.1e-18 1 No_clan
Cotton_A_02330_CDS 157 187 155 188 PF13181.6 TPR_8 Repeat 3 33 34 17.9 0.0025 1 CL0020
Cotton_A_02330_CDS 320 370 319 370 PF17830.1 STI1 Domain 5 55 55 47.8 1e-12 1 No_clan
Cotton_A_16744_CDS 43 185 42 185 PF00056.23 Ldh_1_N Family 2 141 141 161.1 1.6e-47 1 CL0063
Cotton_A_16744_CDS 187 350 187 351 PF02866.18 Ldh_1_C Domain 1 166 167 170.3 3.3e-50 1 CL0341
Cotton_A_26406_CDS 51 202 51 203 PF00719.19 Pyrophosphatase Domain 1 159 160 186.3 3.2e-55 1 No_clan
Cotton_A_17324_CDS 26 102 26 103 PF00240.23 ubiquitin Domain 1 71 72 39.8 2.8e-10 1 CL0072
Cotton_A_31147_CDS 4 105 3 106 PF13947.6 GUB_WAK_bind Domain 2 105 106 33.6 5e-08 1 No_clan
Cotton_A_31147_CDS 263 303 261 305 PF13639.6 zf-RING_2 Domain 3 42 44 37.5 2.2e-09 1 CL0229
Cotton_A_04836_CDS 7 216 1 216 PF08597.10 eIF3_subunit Family 16 242 242 165.9 1.4e-48 1 No_clan
Cotton_A_28927_CDS 151 271 150 278 PF04488.15 Gly_transf_sug Family 2 94 98 80.8 8.6e-23 1 CL0110
Cotton_A_28927_CDS 290 413 289 415 PF04572.12 Gb3_synth Family 2 128 130 104.8 3.5e-30 1 No_clan
Cotton_A_28226_CDS 109 159 106 159 PF17830.1 STI1 Domain 4 55 55 39.8 3.1e-10 1 No_clan
Cotton_A_28226_CDS 190 281 189 281 PF12796.7 Ank_2 Repeat 2 83 83 60.9 1.3e-16 1 CL0465
Cotton_A_23262_CDS 24 266 23 267 PF01501.20 Glyco_transf_8 Family 2 255 256 137.9 4.3e-40 1 CL0110
Cotton_A_34058_CDS 31 151 30 151 PF02788.16 RuBisCO_large_N Domain 2 120 120 145.5 7.7e-43 1 No_clan
Cotton_A_16240_CDS 101 236 100 268 PF12706.7 Lactamase_B_2 Domain 2 144 201 43.7 2.2e-11 1 CL0381
Cotton_A_16240_CDS 431 463 426 480 PF07521.12 RMMBL Motif 8 40 62 24.9 1.4e-05 1 CL0398
Cotton_A_16240_CDS 752 835 752 836 PF13837.6 Myb_DNA-bind_4 Domain 1 89 90 64.7 7.5e-18 1 CL0123
Cotton_A_38693_CDS 33 166 31 166 PF02681.14 DUF212 Family 3 128 128 165.8 4.5e-49 1 CL0525
Cotton_A_33746_CDS 27 342 26 343 PF16913.5 PUNUT Family 2 321 322 327.1 1.1e-97 1 CL0184
Cotton_A_34811_CDS 158 448 141 450 PF00282.19 Pyridoxal_deC Domain 64 372 375 91.7 3.7e-26 1 CL0061
Cotton_A_00058_CDS 51 99 51 99 PF13041.6 PPR_2 Repeat 1 50 50 33.3 4e-08 1 CL0020
Cotton_A_00058_CDS 123 149 123 150 PF01535.20 PPR Family 4 30 31 16.1 0.0097 1 CL0020
Cotton_A_00058_CDS 151 177 151 181 PF01535.20 PPR Family 1 27 31 24.0 2.9e-05 1 CL0020
Cotton_A_00058_CDS 225 248 225 252 PF01535.20 PPR Family 4 27 31 12.6 0.13 1 CL0020
Cotton_A_00058_CDS 250 297 250 299 PF13041.6 PPR_2 Repeat 1 48 50 48.9 5.3e-13 1 CL0020
Cotton_A_00058_CDS 318 349 317 350 PF12854.7 PPR_1 Repeat 2 33 34 24.4 1.7e-05 1 CL0020
Cotton_A_00058_CDS 431 547 424 548 PF14432.6 DYW_deaminase Family 8 126 127 115.7 1.2e-33 1 CL0109
Cotton_A_19994_CDS 19 75 3 84 PF13178.6 DUF4005 Family 17 65 93 22.5 0.00013 1 No_clan
Cotton_A_19406_CDS 26 102 14 120 PF02362.21 B3 Family 15 86 101 35.4 7.6e-09 1 CL0405
Cotton_A_03814_CDS 69 181 69 181 PF16656.5 Pur_ac_phosph_N Domain 1 94 94 78.4 4.6e-22 1 CL0159
Cotton_A_03814_CDS 193 405 192 405 PF00149.28 Metallophos Domain 2 204 204 89.1 5.4e-25 1 CL0163
Cotton_A_03814_CDS 420 519 420 520 PF14008.6 Metallophos_C Domain 1 62 63 48.8 9.5e-13 1 No_clan
Cotton_A_23460_CDS 43 285 39 285 PF00141.23 peroxidase Domain 5 229 229 219.6 4.3e-65 1 CL0617
Cotton_A_22695_CDS 15 188 11 191 PF05753.14 TRAP_beta Family 3 176 178 182.3 5.4e-54 1 CL0159
Cotton_A_01953_CDS 36 410 36 422 PF00450.22 Peptidase_S10 Domain 1 370 419 363.5 2.1e-108 1 CL0028
Cotton_A_29585_CDS 27 74 13 84 PF04755.12 PAP_fibrillin Family 21 68 198 23.2 5.3e-05 1 No_clan
Cotton_A_29243_CDS 8 201 2 201 PF00931.22 NB-ARC Domain 50 252 252 159.6 7.9e-47 1 CL0023
Cotton_A_29243_CDS 340 399 340 400 PF13855.6 LRR_8 Repeat 1 60 61 50.0 1.9e-13 1 CL0022
Cotton_A_24052_CDS 274 363 269 367 PF00180.20 Iso_dh Domain 255 348 348 102.7 2.2e-29 1 CL0270
Cotton_A_35239_CDS 9 87 8 87 PF00347.23 Ribosomal_L6 Domain 2 76 76 50.3 2.8e-13 1 No_clan
Cotton_A_02244_CDS 7 130 5 130 PF00410.19 Ribosomal_S8 Domain 3 127 127 78.5 4.1e-22 1 No_clan
Cotton_A_01654_CDS 888 1013 888 1013 PF18868.1 zf-C2H2_3rep Repeat 1 126 126 219.6 1.5e-65 1 No_clan
Cotton_A_01654_CDS 1242 1375 1241 1375 PF05033.16 Pre-SET Family 2 109 109 51.6 1.2e-13 1 No_clan
Cotton_A_01654_CDS 1394 1514 1394 1515 PF00856.28 SET Family 1 168 169 76.8 2.5e-21 1 No_clan
Cotton_A_33057_CDS 220 398 216 405 PF00852.19 Glyco_transf_10 Family 3 163 177 107.6 5.8e-31 1 CL0113
Cotton_A_24356_CDS 192 296 192 299 PF03168.13 LEA_2 Domain 1 99 101 32.0 1.4e-07 1 CL0159
Cotton_A_20859_CDS 14 86 11 86 PF05770.11 Ins134_P3_kin Domain 4 76 201 101.3 4.9e-29 1 CL0179
Cotton_A_12863_CDS 76 125 76 146 PF02416.16 MttA_Hcf106 Family 1 50 53 68.7 1.9e-19 1 No_clan
Cotton_A_39446_CDS 232 262 208 263 PF03765.15 CRAL_TRIO_N Domain 18 45 54 23.5 4.6e-05 1 CL0214
Cotton_A_39446_CDS 262 407 258 408 PF00650.20 CRAL_TRIO Domain 8 158 159 64.5 8.9e-18 1 CL0512
Cotton_A_35586_CDS 12 90 12 90 PF05008.15 V-SNARE Family 1 79 79 81.0 6.2e-23 1 CL0147
Cotton_A_35586_CDS 128 192 128 193 PF12352.8 V-SNARE_C Domain 1 65 66 77.7 6e-22 1 CL0147
Cotton_A_16627_CDS 148 286 147 298 PF00293.28 NUDIX Domain 2 121 131 51.4 1.1e-13 1 CL0261
Cotton_A_28115_CDS 150 196 146 196 PF13857.6 Ank_5 Repeat 11 55 56 35.8 7.1e-09 1 CL0465
Cotton_A_13491_CDS 12 54 3 54 PF05922.16 Inhibitor_I9 Domain 40 82 82 42.9 6e-11 1 CL0570
Cotton_A_13491_CDS 75 499 74 499 PF00082.22 Peptidase_S8 Domain 2 298 298 114.8 4.4e-33 1 No_clan
Cotton_A_13491_CDS 554 649 554 650 PF17766.1 fn3_6 Domain 1 98 99 84.5 4.7e-24 1 CL0159
Cotton_A_24175_CDS 46 244 46 260 PF00141.23 peroxidase Domain 1 188 229 203.7 3.2e-60 1 CL0617
Cotton_A_02023_CDS 108 340 105 357 PF00348.17 polyprenyl_synt Domain 4 234 256 191.6 1.2e-56 1 CL0613
Cotton_A_15875_CDS 62 257 62 258 PF00504.21 Chloroa_b-bind Family 1 160 161 165.4 1.5e-48 1 No_clan
Cotton_A_07195_CDS 61 117 61 117 PF08246.12 Inhibitor_I29 Domain 1 58 58 43.9 2.5e-11 1 No_clan
Cotton_A_07195_CDS 145 368 145 370 PF00112.23 Peptidase_C1 Domain 1 216 218 248.7 6.5e-74 1 CL0125
Cotton_A_10202_CDS 231 258 231 265 PF13176.6 TPR_7 Repeat 1 28 36 18.9 0.001 1 CL0020
Cotton_A_10202_CDS 394 468 394 470 PF13424.6 TPR_12 Repeat 1 75 77 44.5 1.4e-11 1 CL0020
Cotton_A_10202_CDS 484 514 480 520 PF13374.6 TPR_10 Repeat 5 35 42 17.0 0.0041 1 CL0020
Cotton_A_10202_CDS 565 637 562 638 PF13424.6 TPR_12 Repeat 4 76 77 39.4 5.7e-10 1 CL0020
Cotton_A_26911_CDS 38 64 32 64 PF00400.32 WD40 Repeat 8 38 38 12.1 0.28 1 CL0186
Cotton_A_26911_CDS 146 175 138 176 PF00400.32 WD40 Repeat 9 37 38 19.6 0.0012 1 CL0186
Cotton_A_26911_CDS 182 217 180 217 PF00400.32 WD40 Repeat 3 37 38 12.5 0.22 1 CL0186
Cotton_A_26911_CDS 239 265 227 266 PF00400.32 WD40 Repeat 11 37 38 15.2 0.03 1 CL0186
Cotton_A_26911_CDS 276 307 273 308 PF00400.32 WD40 Repeat 5 37 38 16.3 0.013 1 CL0186
Cotton_A_26911_CDS 317 361 315 362 PF00400.32 WD40 Repeat 3 37 38 22.9 0.00011 1 CL0186
Cotton_A_09547_CDS 143 278 142 281 PF02450.15 LCAT Family 2 143 392 90.8 1e-25 1 CL0028
Cotton_A_40812_CDS 275 363 274 419 PF00224.21 PK Family 2 89 348 49.3 3.3e-13 1 CL0151
Cotton_A_40812_CDS 477 746 466 752 PF00224.21 PK Family 82 342 348 139.7 1e-40 1 CL0151
Cotton_A_35479_CDS 8 243 8 251 PF01370.21 Epimerase Family 1 229 241 75.9 3.1e-21 1 CL0063
Cotton_A_08609_CDS 59 143 57 153 PF00651.31 BTB Domain 6 84 111 42.5 6.1e-11 1 CL0033
Cotton_A_08609_CDS 225 273 225 273 PF11900.8 DUF3420 Repeat 1 47 47 40.2 2.7e-10 1 CL0465
Cotton_A_08609_CDS 299 346 297 351 PF13637.6 Ank_4 Repeat 3 50 55 26.3 8e-06 1 CL0465
Cotton_A_08609_CDS 372 574 372 574 PF12313.8 NPR1_like_C Family 1 205 205 309.8 7.1e-93 1 No_clan
Cotton_A_15530_CDS 191 278 190 278 PF13813.6 MBOAT_2 Family 2 83 83 56.1 3.3e-15 1 CL0517
Cotton_A_25541_CDS 4 89 2 133 PF03004.14 Transposase_24 Family 3 89 142 59.9 2.8e-16 1 No_clan
Cotton_A_20549_CDS 29 475 29 491 PF00067.22 p450 Domain 1 448 463 340.0 2e-101 1 No_clan
Cotton_A_09452_CDS 549 592 548 594 PF02213.16 GYF Domain 3 43 45 36.4 2.9e-09 1 CL0673
Cotton_A_27111_CDS 24 509 22 511 PF00083.24 Sugar_tr Family 3 449 452 161.7 2.7e-47 1 CL0015
Cotton_A_05685_CDS 2 126 1 130 PF00069.25 Pkinase Domain 139 259 264 46.0 4.1e-12 1 CL0016
Cotton_A_02922_CDS 86 349 84 350 PF03381.15 CDC50 Family 3 279 280 281.9 5.9e-84 1 No_clan
Cotton_A_14405_CDS 52 240 52 240 PF14215.6 bHLH-MYC_N Family 1 175 175 188.3 1.4e-55 1 CL0161
Cotton_A_14405_CDS 447 493 445 493 PF00010.26 HLH Domain 4 53 53 42.1 5.9e-11 1 No_clan
Cotton_A_14323_CDS 90 460 89 461 PF01053.20 Cys_Met_Meta_PP Domain 2 381 382 484.0 2.2e-145 1 CL0061
Cotton_A_32890_CDS 13 52 11 54 PF00646.33 F-box Domain 5 44 48 20.5 0.00032 1 CL0271
Cotton_A_32890_CDS 119 159 115 159 PF01344.25 Kelch_1 Repeat 8 46 46 38.6 5.8e-10 1 CL0186
Cotton_A_32890_CDS 162 200 161 207 PF01344.25 Kelch_1 Repeat 2 39 46 36.8 2.1e-09 1 CL0186
Cotton_A_17850_CDS 161 253 160 255 PF14380.6 WAK_assoc Domain 2 102 104 50.4 3.1e-13 1 No_clan
Cotton_A_37389_CDS 10 43 8 44 PF08263.12 LRRNT_2 Family 7 40 41 31.9 1.2e-07 1 No_clan
Cotton_A_00501_CDS 135 182 135 184 PF13041.6 PPR_2 Repeat 1 48 50 54.9 7.5e-15 1 CL0020
Cotton_A_00501_CDS 238 285 237 286 PF13041.6 PPR_2 Repeat 2 48 50 36.2 5e-09 1 CL0020
Cotton_A_00501_CDS 314 337 314 341 PF01535.20 PPR Family 4 27 31 10.3 0.68 1 CL0020
Cotton_A_00501_CDS 371 418 370 418 PF13041.6 PPR_2 Repeat 2 49 50 45.4 6.7e-12 1 CL0020
Cotton_A_00501_CDS 476 502 476 506 PF01535.20 PPR Family 1 27 31 20.1 0.00052 1 CL0020
Cotton_A_00501_CDS 550 573 548 577 PF01535.20 PPR Family 4 27 31 20.5 0.0004 1 CL0020
Cotton_A_00501_CDS 576 621 575 624 PF13041.6 PPR_2 Repeat 2 47 50 31.2 1.8e-07 1 CL0020
Cotton_A_00501_CDS 753 875 751 875 PF14432.6 DYW_deaminase Family 3 127 127 117.1 4.4e-34 1 CL0109
Cotton_A_32261_CDS 64 320 59 322 PF00069.25 Pkinase Domain 7 259 264 45.1 7.6e-12 1 CL0016
Cotton_A_04459_CDS 178 221 178 221 PF13639.6 zf-RING_2 Domain 1 44 44 53.8 1.7e-14 1 CL0229
Cotton_A_34591_CDS 8 300 5 300 PF02219.17 MTHFR Domain 4 287 287 417.4 2.8e-125 1 CL0086
Cotton_A_33225_CDS 102 127 102 128 PF13912.6 zf-C2H2_6 Domain 1 26 27 40.2 2.3e-10 1 CL0361
Cotton_A_33225_CDS 171 196 171 197 PF13912.6 zf-C2H2_6 Domain 1 26 27 48.3 6.4e-13 1 CL0361
Cotton_A_19652_CDS 109 147 108 148 PF00514.23 Arm Repeat 2 40 41 24.6 1.8e-05 1 CL0020
Cotton_A_36582_CDS 130 178 130 179 PF13041.6 PPR_2 Repeat 1 49 50 43.2 3.3e-11 1 CL0020
Cotton_A_36582_CDS 235 283 235 284 PF13041.6 PPR_2 Repeat 1 49 50 55.8 3.8e-15 1 CL0020
Cotton_A_36582_CDS 304 333 302 334 PF12854.7 PPR_1 Repeat 4 33 34 28.6 8.5e-07 1 CL0020
Cotton_A_36582_CDS 343 382 340 384 PF13041.6 PPR_2 Repeat 4 43 50 31.5 1.5e-07 1 CL0020
Cotton_A_36582_CDS 383 402 381 406 PF01535.20 PPR Family 7 26 31 9.4 1.3 1 CL0020
Cotton_A_36582_CDS 414 457 413 458 PF13041.6 PPR_2 Repeat 6 49 50 45.7 5.6e-12 1 CL0020
Cotton_A_36582_CDS 479 527 479 528 PF13041.6 PPR_2 Repeat 1 49 50 36.9 3.1e-09 1 CL0020
Cotton_A_27197_CDS 11 52 7 59 PF00933.21 Glyco_hydro_3 Domain 122 163 319 35.4 7.4e-09 1 CL0058
Cotton_A_23123_CDS 82 195 82 195 PF03479.15 DUF296 Domain 1 107 107 103.3 8.5e-30 1 CL0615
Cotton_A_32273_CDS 241 580 222 580 PF09737.9 Det1 Family 57 411 411 382.1 3.3e-114 1 No_clan
Cotton_A_37526_CDS 99 401 98 405 PF13249.6 SQHop_cyclase_N Domain 2 287 291 132.7 1.3e-38 1 CL0059
Cotton_A_37526_CDS 463 681 450 694 PF13243.6 SQHop_cyclase_C Domain 84 288 319 108.3 4e-31 1 CL0059
Cotton_A_16646_CDS 40 98 40 100 PF13921.6 Myb_DNA-bind_6 Domain 1 58 60 64.5 7.7e-18 1 CL0123
Cotton_A_06478_CDS 144 203 143 203 PF13855.6 LRR_8 Repeat 2 61 61 35.8 5.1e-09 1 CL0022
Cotton_A_06478_CDS 389 447 387 447 PF13855.6 LRR_8 Repeat 3 61 61 38.9 5.4e-10 1 CL0022
Cotton_A_06478_CDS 506 561 504 561 PF13855.6 LRR_8 Repeat 6 61 61 36.5 3e-09 1 CL0022
Cotton_A_01174_CDS 156 213 155 213 PF03106.15 WRKY Domain 2 59 59 85.2 2.6e-24 1 CL0274
Cotton_A_29829_CDS 478 703 477 706 PF04842.12 DUF639 Family 2 228 231 229.0 4.9e-68 1 CL0484
Cotton_A_01847_CDS 31 133 30 133 PF00085.20 Thioredoxin Domain 2 103 103 91.2 3.4e-26 1 CL0172
Cotton_A_01847_CDS 188 327 173 349 PF13848.6 Thioredoxin_6 Domain 30 166 184 40.2 3.4e-10 1 CL0172
Cotton_A_13040_CDS 101 290 101 425 PF00009.27 GTP_EFTU Domain 1 186 194 151.3 2.3e-44 1 CL0023
Cotton_A_13040_CDS 332 398 332 399 PF03144.25 GTP_EFTU_D2 Domain 1 73 74 31.8 1.4e-07 1 CL0575
Cotton_A_13040_CDS 405 513 404 514 PF03143.17 GTP_EFTU_D3 Domain 2 110 112 117.2 4.3e-34 1 No_clan
Cotton_A_01156_CDS 41 220 41 221 PF00350.23 Dynamin_N Domain 1 167 168 180.1 3.5e-53 1 CL0023
Cotton_A_01156_CDS 230 514 230 516 PF01031.20 Dynamin_M Family 1 283 285 331.0 5.3e-99 1 No_clan
Cotton_A_01156_CDS 635 723 632 723 PF02212.18 GED Family 4 92 92 92.0 2e-26 1 No_clan
Cotton_A_01339_CDS 14 73 14 75 PF00076.22 RRM_1 Domain 1 67 70 56.5 1.8e-15 1 CL0221
Cotton_A_01339_CDS 111 173 111 174 PF00076.22 RRM_1 Domain 1 69 70 53.2 1.9e-14 1 CL0221
Cotton_A_03355_CDS 14 57 10 58 PF15801.5 zf-C6H2 Domain 4 46 47 54.6 1e-14 1 CL0175
Cotton_A_03355_CDS 151 379 151 379 PF00557.24 Peptidase_M24 Domain 1 209 209 182.9 5.9e-54 1 No_clan
Cotton_A_23561_CDS 99 147 98 148 PF13920.6 zf-C3HC4_3 Domain 2 49 50 54.7 6.5e-15 1 CL0229
Cotton_A_14656_CDS 274 340 273 343 PF04564.15 U-box Domain 2 68 73 63.2 1.8e-17 1 CL0229
Cotton_A_28364_CDS 184 332 182 332 PF01590.26 GAF Domain 3 133 133 41.4 2.1e-10 1 CL0161
Cotton_A_28364_CDS 637 744 637 751 PF00072.24 Response_reg Domain 1 105 112 75.1 4.6e-21 1 CL0304
Cotton_A_40154_CDS 66 127 66 127 PF00226.31 DnaJ Domain 1 63 63 70.1 1.3e-19 1 CL0392
Cotton_A_08397_CDS 59 130 59 130 PF04640.14 PLATZ Family 1 82 82 86.7 1.2e-24 1 No_clan
Cotton_A_02277_CDS 158 212 157 212 PF02045.15 CBFB_NFYA Family 2 56 56 87.3 7.7e-25 1 No_clan
Cotton_A_02277_CDS 326 369 325 369 PF08263.12 LRRNT_2 Family 2 41 41 31.1 2.2e-07 1 No_clan
Cotton_A_02277_CDS 634 695 634 695 PF13855.6 LRR_8 Repeat 1 61 61 31.5 1.1e-07 1 CL0022
Cotton_A_02277_CDS 707 767 707 767 PF13855.6 LRR_8 Repeat 1 61 61 34.7 1.1e-08 1 CL0022
Cotton_A_07027_CDS 22 127 12 192 PF00141.23 peroxidase Domain 11 109 229 72.1 5.2e-20 1 CL0617
Cotton_A_31604_CDS 37 365 37 367 PF00657.22 Lipase_GDSL Family 1 198 200 43.0 4.8e-11 1 CL0264
Cotton_A_23941_CDS 7 40 3 41 PF13456.6 RVT_3 Domain 90 123 124 24.6 1.7e-05 1 CL0219
Cotton_A_01098_CDS 78 88 74 88 PF14608.6 zf-CCCH_2 Domain 8 17 18 9.4 1.5 1 CL0537
Cotton_A_01098_CDS 130 155 130 155 PF00642.24 zf-CCCH Family 2 27 27 27.6 2e-06 1 CL0537
Cotton_A_01098_CDS 202 265 201 265 PF00013.29 KH_1 Domain 2 66 66 46.0 3.4e-12 1 CL0007
Cotton_A_01098_CDS 292 316 292 317 PF00642.24 zf-CCCH Family 1 26 27 35.7 5.5e-09 1 CL0537
Cotton_A_28099_CDS 79 252 78 254 PF06026.14 Rib_5-P_isom_A Family 2 171 173 210.8 1e-62 1 CL0246
Cotton_A_36079_CDS 42 139 42 144 PF12215.8 Glyco_hydr_116N Family 1 93 312 118.7 3.5e-34 1 CL0103
Cotton_A_40855_CDS 71 108 71 115 PF17919.1 RT_RNaseH_2 Domain 1 38 100 32.1 9.1e-08 1 CL0219
Cotton_A_40855_CDS 147 182 145 186 PF17921.1 Integrase_H2C2 Domain 3 36 58 29.8 4.9e-07 1 CL0361
Cotton_A_32484_CDS 8 59 7 60 PF14416.6 PMR5N Domain 2 52 53 76.2 1.8e-21 1 No_clan
Cotton_A_32484_CDS 61 330 61 331 PF13839.6 PC-Esterase Family 1 282 283 284.0 1.6e-84 1 CL0264
Cotton_A_27433_CDS 1 234 1 235 PF06813.13 Nodulin-like Family 12 249 250 271.1 8.7e-81 1 CL0015
Cotton_A_30061_CDS 33 72 32 73 PF08263.12 LRRNT_2 Family 2 40 41 42.2 7.2e-11 1 No_clan
Cotton_A_30061_CDS 430 681 426 681 PF07714.17 Pkinase_Tyr Domain 14 259 259 72.7 2.8e-20 1 CL0016
Cotton_A_29353_CDS 11 48 3 49 PF00319.18 SRF-TF Domain 10 47 48 50.6 9.5e-14 1 No_clan
Cotton_A_20165_CDS 43 285 43 287 PF00335.20 Tetraspanin Family 1 227 229 35.4 9e-09 1 CL0347
Cotton_A_37498_CDS 19 70 1 70 PF04749.17 PLAC8 Family 50 99 99 56.6 4.1e-15 1 No_clan
Cotton_A_36423_CDS 120 152 104 152 PF00400.32 WD40 Repeat 12 38 38 12.3 0.25 1 CL0186
Cotton_A_37294_CDS 36 94 36 96 PF01221.18 Dynein_light Domain 1 61 86 71.8 4.5e-20 1 No_clan
Cotton_A_02497_CDS 9 277 7 283 PF04791.16 LMBR1 Family 3 230 510 170.5 6.7e-50 1 No_clan
Cotton_A_02497_CDS 266 489 259 490 PF04791.16 LMBR1 Family 276 509 510 118.9 2.8e-34 1 No_clan
Cotton_A_11796_CDS 1 121 1 122 PF15697.5 DUF4666 Family 1 110 111 130.6 3.6e-38 1 No_clan
Cotton_A_28486_CDS 30 382 30 383 PF12819.7 Malectin_like Domain 1 335 336 131.7 3.2e-38 1 CL0202
Cotton_A_15099_CDS 25 61 24 61 PF08263.12 LRRNT_2 Family 6 41 41 25.6 1.1e-05 1 No_clan
Cotton_A_15099_CDS 365 626 359 626 PF07714.17 Pkinase_Tyr Domain 8 259 259 132.9 1.2e-38 1 CL0016
Cotton_A_39375_CDS 66 206 53 215 PF07034.11 ORC3_N Family 17 140 332 32.3 5.5e-08 1 CL0023
Cotton_A_39375_CDS 225 359 213 359 PF07034.11 ORC3_N Family 199 332 332 101.8 3.8e-29 1 CL0023
Cotton_A_39375_CDS 600 745 600 745 PF18137.1 ORC_WH_C Domain 1 140 140 82.7 2.5e-23 1 CL0123
Cotton_A_17780_CDS 100 160 99 161 PF00226.31 DnaJ Domain 2 62 63 68.3 4.6e-19 1 CL0392
Cotton_A_17780_CDS 222 356 216 367 PF02889.16 Sec63 Family 11 131 257 41.4 8.8e-11 1 No_clan
Cotton_A_12984_CDS 59 177 59 177 PF09725.9 Fra10Ac1 Family 1 125 125 161.6 8.3e-48 1 No_clan
Cotton_A_34266_CDS 92 851 92 852 PF05691.12 Raffinose_syn Family 1 749 750 1117.9 0 1 CL0058
Cotton_A_24610_CDS 26 64 18 72 PF06404.12 PSK Family 46 82 90 32.8 1.1e-07 1 No_clan
Cotton_A_32941_CDS 132 179 131 179 PF02042.15 RWP-RK Family 2 49 49 78.4 2.9e-22 1 No_clan
Cotton_A_02036_CDS 1 119 1 119 PF00562.28 RNA_pol_Rpb2_6 Domain 287 390 390 86.3 2.1e-24 1 CL0410
Cotton_A_02036_CDS 121 186 121 186 PF04560.20 RNA_pol_Rpb2_7 Domain 1 75 87 55.3 6.7e-15 1 No_clan
Cotton_A_35943_CDS 14 37 14 37 PF01754.16 zf-A20 Family 1 24 24 48.5 6e-13 1 No_clan
Cotton_A_02899_CDS 130 727 130 727 PF00888.22 Cullin Family 1 618 618 688.5 8.9e-207 1 No_clan
Cotton_A_02899_CDS 758 818 758 818 PF10557.9 Cullin_Nedd8 Domain 1 63 63 81.5 3.2e-23 1 CL0123
Cotton_A_16482_CDS 13 73 11 74 PF13499.6 EF-hand_7 Domain 4 70 71 57.3 1.6e-15 1 CL0220
Cotton_A_16482_CDS 83 146 83 147 PF13499.6 EF-hand_7 Domain 1 70 71 63.9 1.4e-17 1 CL0220
Cotton_A_05157_CDS 73 175 68 189 PF04675.14 DNA_ligase_A_N Family 7 97 173 30.0 5.6e-07 1 No_clan
Cotton_A_05157_CDS 210 251 210 253 PF01068.21 DNA_ligase_A_M Domain 1 41 204 40.2 2.8e-10 1 CL0078
Cotton_A_05157_CDS 268 385 268 397 PF04679.15 DNA_ligase_A_C Family 1 85 99 35.5 1.2e-08 1 CL0021
Cotton_A_07102_CDS 35 189 33 189 PF04043.15 PMEI Domain 3 154 154 136.2 1.1e-39 1 No_clan
Cotton_A_05585_CDS 340 390 334 393 PF13812.6 PPR_3 Repeat 7 57 63 19.0 0.0011 1 CL0020
Cotton_A_05585_CDS 406 463 404 465 PF13812.6 PPR_3 Repeat 3 60 63 18.0 0.0023 1 CL0020
Cotton_A_36489_CDS 31 338 30 342 PF00657.22 Lipase_GDSL Family 2 196 200 54.4 1.6e-14 1 CL0264
Cotton_A_23671_CDS 108 321 108 322 PF07859.13 Abhydrolase_3 Domain 1 210 211 204.0 2.4e-60 1 CL0028
Cotton_A_01345_CDS 44 293 42 298 PF00069.25 Pkinase Domain 3 257 264 221.5 1.2e-65 1 CL0016
Cotton_A_24691_CDS 85 577 85 578 PF00118.24 Cpn60_TCP1 Family 1 490 491 326.1 3.4e-97 1 No_clan
Cotton_A_23446_CDS 56 383 55 385 PF00520.31 Ion_trans Family 2 243 245 94.0 8.4e-27 1 CL0030
Cotton_A_23446_CDS 479 568 477 572 PF00027.29 cNMP_binding Domain 6 85 89 34.1 2.1e-08 1 CL0029
Cotton_A_27241_CDS 345 429 345 430 PF00439.25 Bromodomain Domain 1 83 84 71.2 5.5e-20 1 No_clan
Cotton_A_27241_CDS 523 584 522 585 PF17035.5 BET Domain 2 63 64 79.2 1.9e-22 1 CL0665
Cotton_A_32552_CDS 447 545 447 548 PF06241.12 Castor_Poll_mid Family 1 101 104 138.0 9.6e-41 1 CL0582
Cotton_A_29219_CDS 39 91 38 91 PF13637.6 Ank_4 Repeat 3 55 55 24.7 2.5e-05 1 CL0465
Cotton_A_29219_CDS 109 217 109 217 PF12796.7 Ank_2 Repeat 1 83 83 36.1 7.3e-09 1 CL0465
Cotton_A_33900_CDS 87 322 87 323 PF13561.6 adh_short_C2 Domain 1 233 234 221.6 1e-65 1 CL0063
Cotton_A_09732_CDS 117 149 117 149 PF02375.17 JmjN Family 1 33 34 52.3 3.8e-14 1 CL0029
Cotton_A_09732_CDS 293 416 293 416 PF02373.22 JmjC Domain 1 114 114 137.0 3.6e-40 1 CL0029
Cotton_A_09732_CDS 513 564 513 565 PF02928.16 zf-C5HC2 Domain 1 53 54 32.5 8.1e-08 1 No_clan
Cotton_A_00098_CDS 96 462 95 463 PF03124.14 EXS Family 2 330 331 303.5 2e-90 1 CL0182
Cotton_A_36436_CDS 6 51 2 51 PF00010.26 HLH Domain 8 53 53 28.7 9.3e-07 1 No_clan
Cotton_A_32486_CDS 127 173 113 173 PF00010.26 HLH Domain 4 53 53 31.1 1.7e-07 1 No_clan
Cotton_A_05317_CDS 91 563 86 563 PF03219.14 TLC Family 12 491 491 662.9 2.8e-199 1 CL0015
Cotton_A_26035_CDS 16 97 9 106 PF02362.21 B3 Family 10 91 101 31.7 1e-07 1 CL0405
Cotton_A_12099_CDS 365 403 365 403 PF04810.15 zf-Sec23_Sec24 Domain 1 39 39 62.1 3.5e-17 1 No_clan
Cotton_A_12099_CDS 435 650 426 651 PF04811.15 Sec23_trunk Domain 22 242 243 239.4 4.1e-71 1 CL0128
Cotton_A_12099_CDS 656 739 656 740 PF08033.12 Sec23_BS Domain 1 95 96 65.7 4.6e-18 1 No_clan
Cotton_A_12099_CDS 751 854 751 855 PF04815.15 Sec23_helical Domain 1 102 103 69.0 2.4e-19 1 No_clan
Cotton_A_28448_CDS 33 93 21 93 PF12796.7 Ank_2 Repeat 29 83 83 28.1 2.2e-06 1 CL0465
Cotton_A_28448_CDS 157 412 154 412 PF07714.17 Pkinase_Tyr Domain 4 259 259 216.3 4.3e-64 1 CL0016
Cotton_A_28521_CDS 37 348 36 349 PF01301.19 Glyco_hydro_35 Domain 2 315 316 383.5 1e-114 1 CL0058
Cotton_A_28521_CDS 356 427 356 427 PF17834.1 GHD Domain 1 72 72 93.9 4.3e-27 1 CL0369
Cotton_A_28521_CDS 772 849 772 849 PF02140.18 Gal_Lectin Domain 1 80 80 70.3 1.4e-19 1 No_clan
Cotton_A_26082_CDS 111 371 111 371 PF00685.27 Sulfotransfer_1 Domain 1 267 267 239.9 3.4e-71 1 CL0023
Cotton_A_24988_CDS 25 176 11 191 PF00069.25 Pkinase Domain 22 152 264 82.0 4.5e-23 1 CL0016
Cotton_A_08470_CDS 2 60 1 62 PF13962.6 PGG Domain 60 114 116 27.0 3.2e-06 1 No_clan
Cotton_A_01581_CDS 35 71 27 75 PF09791.9 Oxidored-like Family 8 42 46 53.1 1.8e-14 1 No_clan
Cotton_A_05974_CDS 1 129 1 129 PF07123.12 PsbW Family 1 132 132 184.6 7.1e-55 1 No_clan
Cotton_A_32892_CDS 1 76 1 82 PF03004.14 Transposase_24 Family 8 84 142 57.2 1.9e-15 1 No_clan
Cotton_A_39348_CDS 56 110 54 111 PF00403.26 HMA Domain 3 61 62 40.4 3e-10 1 No_clan
Cotton_A_22423_CDS 17 79 17 79 PF00226.31 DnaJ Domain 1 63 63 91.6 2.5e-26 1 CL0392
Cotton_A_09745_CDS 441 827 426 830 PF00503.20 G-alpha Domain 19 351 354 220.4 3.8e-65 1 CL0023
Cotton_A_22625_CDS 51 325 51 325 PF00664.23 ABC_membrane Family 1 274 274 200.0 5.7e-59 1 CL0241
Cotton_A_22625_CDS 394 541 392 541 PF00005.27 ABC_tran Domain 3 137 137 120.0 1e-34 1 CL0023
Cotton_A_22625_CDS 709 892 709 904 PF00664.23 ABC_membrane Family 1 183 274 118.9 3e-34 1 CL0241
Cotton_A_34815_CDS 24 163 23 164 PF08718.11 GLTP Domain 2 147 149 144.7 2.5e-42 1 No_clan
Cotton_A_27344_CDS 21 268 20 269 PF00139.19 Lectin_legB Domain 2 247 249 234.4 1.4e-69 1 CL0004
Cotton_A_27344_CDS 343 518 341 526 PF00069.25 Pkinase Domain 3 170 264 139.0 1.8e-40 1 CL0016
Cotton_A_14992_CDS 25 94 18 95 PF13499.6 EF-hand_7 Domain 5 70 71 33.7 3.8e-08 1 CL0220
Cotton_A_32322_CDS 90 261 90 261 PF14543.6 TAXi_N Domain 1 178 178 186.1 6.7e-55 1 CL0129
Cotton_A_32322_CDS 283 425 283 426 PF14541.6 TAXi_C Domain 1 160 161 93.8 8.9e-27 1 CL0129
Cotton_A_15249_CDS 58 89 58 113 PF13450.6 NAD_binding_8 Domain 1 32 68 27.9 2.1e-06 1 CL0063
Cotton_A_05672_CDS 59 136 13 136 PF02519.14 Auxin_inducible Family 17 90 90 90.8 4.8e-26 1 No_clan
Cotton_A_22289_CDS 78 171 78 218 PF03634.13 TCP Family 1 86 156 113.1 1.7e-32 1 No_clan
Cotton_A_04703_CDS 54 189 51 199 PF04043.15 PMEI Domain 6 141 154 64.5 1.4e-17 1 No_clan
Cotton_A_04703_CDS 239 304 231 305 PF01095.19 Pectinesterase Family 19 84 298 69.7 1.7e-19 1 CL0268
Cotton_A_14359_CDS 339 426 310 438 PF00534.20 Glycos_transf_1 Family 77 161 172 28.6 8.8e-07 1 CL0113
Cotton_A_24432_CDS 117 146 116 146 PF01535.20 PPR Family 2 31 31 19.5 0.00078 1 CL0020
Cotton_A_24432_CDS 148 197 148 197 PF13041.6 PPR_2 Repeat 1 50 50 59.8 2.2e-16 1 CL0020
Cotton_A_24432_CDS 216 246 216 248 PF12854.7 PPR_1 Repeat 1 31 34 37.6 1.3e-09 1 CL0020
Cotton_A_24432_CDS 255 304 255 304 PF13041.6 PPR_2 Repeat 1 50 50 62.6 2.9e-17 1 CL0020
Cotton_A_24432_CDS 321 354 321 354 PF12854.7 PPR_1 Repeat 1 34 34 44.9 6.5e-12 1 CL0020
Cotton_A_24432_CDS 360 409 360 409 PF13041.6 PPR_2 Repeat 1 50 50 62.8 2.6e-17 1 CL0020
Cotton_A_24432_CDS 430 479 430 479 PF13041.6 PPR_2 Repeat 1 50 50 53.8 1.6e-14 1 CL0020
Cotton_A_24432_CDS 501 549 500 549 PF13041.6 PPR_2 Repeat 2 50 50 52.4 4.5e-14 1 CL0020
Cotton_A_24432_CDS 574 603 573 603 PF01535.20 PPR Family 2 31 31 22.8 7.3e-05 1 CL0020
Cotton_A_32846_CDS 1 45 1 48 PF08132.11 AdoMetDC_leader Family 1 45 51 94.6 2.4e-27 1 No_clan
Cotton_A_32846_CDS 98 420 96 421 PF01536.16 SAM_decarbox Family 3 354 355 365.1 3.5e-109 1 No_clan
Cotton_A_24965_CDS 52 523 48 523 PF00501.28 AMP-binding Family 5 423 423 347.1 1.1e-103 1 CL0378
Cotton_A_22503_CDS 383 520 382 521 PF01764.25 Lipase_3 Family 2 141 142 84.3 7.3e-24 1 CL0028
Cotton_A_30489_CDS 49 73 48 74 PF00642.24 zf-CCCH Family 2 26 27 37.0 2.1e-09 1 CL0537
Cotton_A_30489_CDS 92 116 91 116 PF00642.24 zf-CCCH Family 3 27 27 37.3 1.8e-09 1 CL0537
Cotton_A_30489_CDS 137 161 135 161 PF00642.24 zf-CCCH Family 3 27 27 39.4 3.8e-10 1 CL0537
Cotton_A_30489_CDS 277 302 276 302 PF00642.24 zf-CCCH Family 2 27 27 39.2 4.3e-10 1 CL0537
Cotton_A_30489_CDS 323 347 322 348 PF00642.24 zf-CCCH Family 2 26 27 24.7 1.6e-05 1 CL0537
Cotton_A_32193_CDS 9 101 5 104 PF00635.26 Motile_Sperm Domain 13 106 109 109.2 8.6e-32 1 CL0556
Cotton_A_28031_CDS 8 170 8 171 PF04939.12 RRS1 Family 1 161 162 173.5 3.1e-51 1 No_clan
Cotton_A_13589_CDS 54 213 54 214 PF00406.22 ADK Domain 1 150 151 157.6 2.3e-46 1 CL0023
Cotton_A_31873_CDS 10 315 10 315 PF16363.5 GDP_Man_Dehyd Domain 1 332 332 230.9 2.5e-68 1 CL0063
Cotton_A_31873_CDS 384 559 383 658 PF04321.17 RmlD_sub_bind Domain 2 171 287 52.8 2.9e-14 1 CL0063
Cotton_A_06490_CDS 102 207 100 207 PF00254.28 FKBP_C Domain 3 94 94 69.8 1.9e-19 1 CL0487
Cotton_A_27392_CDS 3 89 1 90 PF03083.16 MtN3_slv Family 3 86 87 78.7 2.5e-22 1 CL0141
Cotton_A_27392_CDS 126 210 125 211 PF03083.16 MtN3_slv Family 2 86 87 85.2 2.4e-24 1 CL0141
Cotton_A_20392_CDS 48 735 47 740 PF11145.8 DUF2921 Family 3 700 894 570.6 5.2e-171 1 No_clan
Cotton_A_20392_CDS 783 1649 781 1650 PF11145.8 DUF2921 Family 3 893 894 818.0 8.8e-246 1 No_clan
Cotton_A_05338_CDS 83 117 83 117 PF13431.6 TPR_17 Repeat 1 34 34 24.7 1.9e-05 1 CL0020
Cotton_A_29909_CDS 468 554 440 554 PF08243.11 SPT2 Domain 19 111 111 58.5 8.1e-16 1 No_clan
Cotton_A_03045_CDS 24 93 24 94 PF00240.23 ubiquitin Domain 1 71 72 63.5 1.2e-17 1 CL0072
Cotton_A_16008_CDS 17 163 15 177 PF03162.13 Y_phosphatase2 Domain 3 149 165 195.7 3.9e-58 1 CL0031
Cotton_A_00270_CDS 21 260 14 260 PF03062.19 MBOAT Family 103 348 348 129.6 1.7e-37 1 CL0517
Cotton_A_29962_CDS 133 311 133 312 PF00800.18 PDT Family 1 182 183 196.4 3.5e-58 1 CL0177
Cotton_A_05915_CDS 41 91 26 97 PF04281.13 Tom22 Family 77 127 138 29.7 4.6e-07 1 No_clan
Cotton_A_17257_CDS 18 563 17 564 PF03321.13 GH3 Family 2 526 527 600.7 2.8e-180 1 CL0378
Cotton_A_40112_CDS 14 86 2 88 PF05915.12 DUF872 Family 43 113 115 62.3 4.3e-17 1 No_clan
Cotton_A_36135_CDS 30 523 30 525 PF00118.24 Cpn60_TCP1 Family 1 489 491 536.3 6.3e-161 1 No_clan
Cotton_A_25896_CDS 18 75 16 77 PF05030.12 SSXT Family 3 60 62 79.4 1.1e-22 1 No_clan
Cotton_A_40048_CDS 46 81 44 84 PF02845.16 CUE Family 3 38 42 35.9 4.2e-09 1 CL0214
Cotton_A_06637_CDS 246 490 245 498 PF01697.27 Glyco_transf_92 Domain 2 252 260 133.0 1.4e-38 1 CL0110
Cotton_A_08073_CDS 108 132 108 134 PF08213.11 DUF1713 Domain 1 25 33 33.3 3.2e-08 1 No_clan
Cotton_A_27440_CDS 159 196 159 197 PF01476.20 LysM Domain 1 38 44 27.8 1.9e-06 1 CL0187
Cotton_A_27440_CDS 362 639 358 640 PF07714.17 Pkinase_Tyr Domain 5 258 259 167.3 3.8e-49 1 CL0016
Cotton_A_11511_CDS 92 127 89 129 PF02845.16 CUE Family 5 40 42 22.2 8.6e-05 1 CL0214
Cotton_A_23897_CDS 83 267 83 268 PF14543.6 TAXi_N Domain 1 177 178 125.2 3.2e-36 1 CL0129
Cotton_A_23897_CDS 285 437 285 438 PF14541.6 TAXi_C Domain 1 160 161 70.4 1.4e-19 1 CL0129
Cotton_A_27528_CDS 10 393 9 394 PF03547.18 Mem_trans Family 2 386 387 191.7 1.2e-56 1 CL0064
Cotton_A_01371_CDS 116 496 115 496 PF00155.21 Aminotran_1_2 Domain 2 363 363 268.0 1.3e-79 1 CL0061
Cotton_A_01931_CDS 98 217 97 219 PF07386.11 DUF1499 Family 2 115 117 23.6 6e-05 1 No_clan
Cotton_A_04480_CDS 29 83 27 83 PF00046.29 Homeodomain Domain 3 57 57 59.5 2.2e-16 1 CL0123
Cotton_A_04480_CDS 565 620 565 620 PF02791.17 DDT Family 1 60 60 63.3 1.9e-17 1 No_clan
Cotton_A_04480_CDS 745 813 745 813 PF05066.13 HARE-HTH Family 1 71 72 49.2 5.1e-13 1 CL0123
Cotton_A_04480_CDS 954 992 951 996 PF15612.6 WHIM1 Family 4 42 46 33.0 2.9e-08 1 No_clan
Cotton_A_04480_CDS 1136 1207 1135 1208 PF15613.6 WSD Family 2 98 99 43.1 4.5e-11 1 No_clan
Cotton_A_15298_CDS 115 189 109 190 PF00810.18 ER_lumen_recept Family 73 146 147 80.4 2.4e-22 1 CL0141
Cotton_A_16353_CDS 588 636 588 636 PF02042.15 RWP-RK Family 1 49 49 90.5 4.6e-26 1 No_clan
Cotton_A_16353_CDS 850 930 849 931 PF00564.24 PB1 Domain 2 83 84 62.5 2.6e-17 1 CL0072
Cotton_A_12010_CDS 4 115 4 127 PF00069.25 Pkinase Domain 1 109 264 66.5 2.3e-18 1 CL0016
Cotton_A_17070_CDS 9 246 2 246 PF14009.6 DUF4228 Family 11 179 179 81.3 1.1e-22 1 No_clan
Cotton_A_09950_CDS 31 109 31 109 PF05922.16 Inhibitor_I9 Domain 1 82 82 46.7 3.8e-12 1 CL0570
Cotton_A_09950_CDS 132 579 132 581 PF00082.22 Peptidase_S8 Domain 1 296 298 184.8 2.2e-54 1 No_clan
Cotton_A_09950_CDS 354 441 351 441 PF02225.22 PA Family 4 89 89 46.2 3.5e-12 1 CL0364
Cotton_A_09950_CDS 636 732 636 733 PF17766.1 fn3_6 Domain 1 98 99 90.0 9e-26 1 CL0159
Cotton_A_20988_CDS 28 68 27 68 PF08263.12 LRRNT_2 Family 2 41 41 42.1 7.8e-11 1 No_clan
Cotton_A_20988_CDS 96 155 73 155 PF13855.6 LRR_8 Repeat 2 61 61 35.3 6.9e-09 1 CL0022
Cotton_A_20988_CDS 450 716 446 718 PF00069.25 Pkinase Domain 6 259 264 89.8 1.9e-25 1 CL0016
Cotton_A_07834_CDS 5 47 4 47 PF08271.12 TF_Zn_Ribbon Domain 2 43 43 54.5 6e-15 1 CL0167
Cotton_A_07834_CDS 112 176 112 183 PF00382.19 TFIIB Domain 1 65 71 69.4 2.1e-19 1 CL0065
Cotton_A_07834_CDS 213 281 213 281 PF00382.19 TFIIB Domain 1 71 71 33.3 3.6e-08 1 CL0065
Cotton_A_35553_CDS 111 191 100 192 PF14380.6 WAK_assoc Domain 13 103 104 62.5 4.9e-17 1 No_clan
Cotton_A_32680_CDS 86 129 85 129 PF13639.6 zf-RING_2 Domain 2 44 44 51.8 7.4e-14 1 CL0229
Cotton_A_02403_CDS 150 174 148 174 PF01535.20 PPR Family 7 31 31 16.5 0.0073 1 CL0020
Cotton_A_02403_CDS 214 243 213 243 PF01535.20 PPR Family 2 31 31 17.4 0.0039 1 CL0020
Cotton_A_02403_CDS 246 294 245 294 PF13041.6 PPR_2 Repeat 2 50 50 55.9 3.7e-15 1 CL0020
Cotton_A_02403_CDS 315 359 315 359 PF13041.6 PPR_2 Repeat 1 45 50 49.6 3.3e-13 1 CL0020
Cotton_A_02403_CDS 385 434 385 434 PF13041.6 PPR_2 Repeat 1 50 50 45.9 4.7e-12 1 CL0020
Cotton_A_25417_CDS 44 123 30 128 PF00085.20 Thioredoxin Domain 14 97 103 57.0 1.6e-15 1 CL0172
Cotton_A_16847_CDS 107 136 106 136 PF01535.20 PPR Family 2 31 31 19.8 0.00066 1 CL0020
Cotton_A_16847_CDS 138 187 138 187 PF13041.6 PPR_2 Repeat 1 50 50 60.0 1.9e-16 1 CL0020
Cotton_A_16847_CDS 208 256 208 256 PF13041.6 PPR_2 Repeat 1 49 50 58.7 4.7e-16 1 CL0020
Cotton_A_16847_CDS 278 309 277 310 PF12854.7 PPR_1 Repeat 2 33 34 26.6 3.5e-06 1 CL0020
Cotton_A_16847_CDS 316 365 316 365 PF13041.6 PPR_2 Repeat 1 50 50 66.0 2.5e-18 1 CL0020
Cotton_A_16847_CDS 386 435 386 435 PF13041.6 PPR_2 Repeat 1 50 50 50.2 2.2e-13 1 CL0020
Cotton_A_16847_CDS 457 505 456 505 PF13041.6 PPR_2 Repeat 2 50 50 59.3 3.1e-16 1 CL0020
Cotton_A_16847_CDS 526 571 526 572 PF13041.6 PPR_2 Repeat 1 46 50 30.6 2.8e-07 1 CL0020
Cotton_A_26517_CDS 1 132 1 132 PF00125.24 Histone Domain 1 131 131 181.4 9.1e-54 1 CL0012
Cotton_A_18900_CDS 37 118 36 118 PF13774.6 Longin Domain 2 84 84 73.9 7.8e-21 1 No_clan
Cotton_A_18900_CDS 133 192 132 203 PF00957.21 Synaptobrevin Family 2 61 89 48.1 7.2e-13 1 CL0445
Cotton_A_07165_CDS 111 439 35 448 PF07690.16 MFS_1 Family 35 328 353 122.1 2.4e-35 1 CL0015
Cotton_A_15454_CDS 84 166 72 168 PF00085.20 Thioredoxin Domain 18 101 103 37.2 2.2e-09 1 CL0172
Cotton_A_11520_CDS 88 335 80 336 PF00481.21 PP2C Family 10 257 258 234.5 1.5e-69 1 CL0238
Cotton_A_30257_CDS 110 163 110 167 PF04844.13 Ovate Family 1 54 58 83.2 9e-24 1 No_clan
Cotton_A_20143_CDS 64 359 62 360 PF00294.24 PfkB Family 4 301 302 209.2 8.3e-62 1 CL0118
Cotton_A_17136_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 50.1 2.3e-13 1 CL0123
Cotton_A_17136_CDS 71 111 67 112 PF00249.31 Myb_DNA-binding Domain 5 45 46 49.2 4.3e-13 1 CL0123
Cotton_A_03214_CDS 319 345 318 345 PF01535.20 PPR Family 3 29 31 13.2 0.084 1 CL0020
Cotton_A_03214_CDS 488 513 486 513 PF01535.20 PPR Family 6 31 31 12.5 0.14 1 CL0020
Cotton_A_03214_CDS 538 583 538 584 PF13812.6 PPR_3 Repeat 1 46 63 24.6 1.9e-05 1 CL0020
Cotton_A_03214_CDS 625 670 623 671 PF13041.6 PPR_2 Repeat 4 49 50 31.4 1.6e-07 1 CL0020
Cotton_A_12502_CDS 91 384 91 391 PF10250.9 O-FucT Family 1 299 336 146.4 1.6e-42 1 CL0113
Cotton_A_24937_CDS 13 98 12 99 PF03083.16 MtN3_slv Family 2 86 87 93.1 7.8e-27 1 CL0141
Cotton_A_24937_CDS 133 218 133 219 PF03083.16 MtN3_slv Family 1 86 87 95.8 1.2e-27 1 CL0141
Cotton_A_19377_CDS 13 57 2 62 PF13456.6 RVT_3 Domain 39 84 124 33.1 3.9e-08 1 CL0219
Cotton_A_14094_CDS 2 106 2 107 PF02362.21 B3 Family 1 100 101 104.1 2.9e-30 1 CL0405
Cotton_A_37073_CDS 104 161 104 161 PF03106.15 WRKY Domain 1 59 59 76.0 2e-21 1 CL0274
Cotton_A_11724_CDS 95 179 89 180 PF13640.6 2OG-FeII_Oxy_3 Domain 7 95 96 50.8 2.3e-13 1 CL0029
Cotton_A_36014_CDS 4 42 1 46 PF00646.33 F-box Domain 6 44 48 26.7 3.6e-06 1 CL0271
Cotton_A_36014_CDS 207 291 203 323 PF07734.13 FBA_1 Family 7 91 164 22.3 9.9e-05 1 CL0162
Cotton_A_10286_CDS 200 283 50 287 PF01936.18 NYN Domain 52 143 147 25.8 1.2e-05 1 CL0280
Cotton_A_11746_CDS 10 57 10 57 PF00319.18 SRF-TF Domain 1 48 48 90.7 2.9e-26 1 No_clan
Cotton_A_11746_CDS 86 142 80 160 PF01486.17 K-box Family 7 63 93 61.9 4.7e-17 1 No_clan
Cotton_A_24059_CDS 38 167 37 200 PF03634.13 TCP Family 2 90 156 105.5 3.7e-30 1 No_clan
Cotton_A_34288_CDS 342 579 342 579 PF07891.12 DUF1666 Family 1 246 246 310.8 7e-93 1 No_clan
Cotton_A_11549_CDS 23 79 23 85 PF00538.19 Linker_histone Domain 1 63 74 31.8 1.3e-07 1 CL0123
Cotton_A_24798_CDS 34 495 33 496 PF03055.15 RPE65 Family 2 462 463 368.3 7.1e-110 1 No_clan
Cotton_A_35069_CDS 49 114 48 115 PF00013.29 KH_1 Domain 2 65 66 53.2 1.9e-14 1 CL0007
Cotton_A_35069_CDS 135 200 134 201 PF00013.29 KH_1 Domain 2 65 66 47.7 1e-12 1 CL0007
Cotton_A_27445_CDS 81 201 80 201 PF02657.15 SufE Family 2 122 122 126.0 7.2e-37 1 CL0233
Cotton_A_27445_CDS 271 349 271 349 PF01722.18 BolA Family 1 76 76 101.4 2.5e-29 1 No_clan
Cotton_A_40216_CDS 1 50 1 51 PF00562.28 RNA_pol_Rpb2_6 Domain 265 314 390 65.8 3.7e-18 1 CL0410
Cotton_A_40216_CDS 76 117 76 126 PF04560.20 RNA_pol_Rpb2_7 Domain 1 46 87 55.5 5.5e-15 1 No_clan
Cotton_A_14137_CDS 1 99 1 100 PF00547.18 Urease_gamma Domain 1 98 99 135.6 5.6e-40 1 No_clan
Cotton_A_14137_CDS 133 229 133 230 PF00699.20 Urease_beta Domain 1 97 98 133.1 2.7e-39 1 No_clan
Cotton_A_14137_CDS 231 264 231 264 PF18473.1 Urease_linker Domain 1 34 34 60.1 1.4e-16 1 No_clan
Cotton_A_14137_CDS 271 389 269 389 PF00449.20 Urease_alpha Domain 3 121 121 181.6 5.6e-54 1 CL0034
Cotton_A_14137_CDS 395 720 395 724 PF01979.20 Amidohydro_1 Domain 1 336 344 248.0 1.6e-73 1 CL0034
Cotton_A_05783_CDS 41 163 39 164 PF08240.12 ADH_N Domain 3 108 109 72.0 3.3e-20 1 CL0296
Cotton_A_05783_CDS 207 331 206 341 PF00107.26 ADH_zinc_N Family 2 120 130 76.5 1.8e-21 1 CL0063
Cotton_A_10976_CDS 97 162 86 176 PF01321.18 Creatinase_N Domain 13 67 132 38.8 1.3e-09 1 CL0356
Cotton_A_00607_CDS 14 92 3 92 PF02519.14 Auxin_inducible Family 3 90 90 95.9 1.2e-27 1 No_clan
Cotton_A_35477_CDS 10 125 9 127 PF01073.19 3Beta_HSD Family 2 114 280 33.5 2.1e-08 1 CL0063
Cotton_A_25989_CDS 3 211 3 212 PF00091.25 Tubulin Domain 1 196 197 234.3 1.4e-69 1 CL0566
Cotton_A_25989_CDS 261 382 261 383 PF03953.17 Tubulin_C Domain 1 125 126 137.1 3.5e-40 1 CL0442
Cotton_A_03825_CDS 20 103 19 108 PF13837.6 Myb_DNA-bind_4 Domain 3 85 90 58.1 8.6e-16 1 CL0123
Cotton_A_05395_CDS 28 102 19 103 PF02298.17 Cu_bind_like Domain 7 83 84 83.2 1e-23 1 CL0026
Cotton_A_20036_CDS 26 260 23 260 PF13561.6 adh_short_C2 Domain 3 234 234 175.1 1.6e-51 1 CL0063
Cotton_A_38330_CDS 7 480 5 482 PF00232.18 Glyco_hydro_1 Domain 3 450 453 553.7 2.3e-166 1 CL0058
Cotton_A_21455_CDS 159 219 157 219 PF09497.10 Med12 Domain 3 63 63 56.0 3.7e-15 1 No_clan
Cotton_A_02004_CDS 12 572 12 590 PF03635.17 Vps35 Family 1 561 730 707.2 2.9e-212 1 No_clan
Cotton_A_28892_CDS 136 368 132 371 PF00232.18 Glyco_hydro_1 Domain 184 403 453 170.7 3.5e-50 1 CL0058
Cotton_A_30947_CDS 1 141 1 141 PF04862.12 DUF642 Domain 17 157 157 209.1 2.8e-62 1 CL0202
Cotton_A_30947_CDS 153 319 152 320 PF04862.12 DUF642 Domain 2 156 157 55.1 7.3e-15 1 CL0202
Cotton_A_14653_CDS 115 167 114 168 PF04770.12 ZF-HD_dimer Family 2 54 55 107.3 3.5e-31 1 No_clan
Cotton_A_40235_CDS 48 118 47 118 PF15044.6 CLU_N Family 2 79 79 34.7 1.7e-08 1 No_clan
Cotton_A_40235_CDS 767 841 759 842 PF13424.6 TPR_12 Repeat 2 76 77 44.5 1.4e-11 1 CL0020
Cotton_A_29033_CDS 44 113 44 114 PF00076.22 RRM_1 Domain 1 69 70 61.0 7e-17 1 CL0221
Cotton_A_00505_CDS 57 110 55 111 PF00046.29 Homeodomain Domain 3 56 57 62.3 2.7e-17 1 CL0123
Cotton_A_00505_CDS 112 146 112 147 PF02183.18 HALZ Coiled-coil 1 42 43 34.9 1.3e-08 1 No_clan
Cotton_A_11068_CDS 32 86 17 88 PF00111.27 Fer2 Domain 15 76 78 25.2 1.2e-05 1 CL0486
Cotton_A_11068_CDS 97 182 97 183 PF01799.20 Fer2_2 Domain 1 75 76 86.2 1.1e-24 1 CL0486
Cotton_A_11068_CDS 244 425 241 425 PF00941.21 FAD_binding_5 Family 3 171 171 139.9 6.3e-41 1 CL0077
Cotton_A_11068_CDS 443 548 442 550 PF03450.17 CO_deh_flav_C Domain 2 101 103 75.6 2.8e-21 1 CL0233
Cotton_A_11068_CDS 629 735 628 736 PF01315.22 Ald_Xan_dh_C Domain 2 109 110 97.4 5.9e-28 1 No_clan
Cotton_A_11068_CDS 764 1165 755 1174 PF02738.18 Ald_Xan_dh_C2 Family 14 409 550 400.0 1.4e-119 1 No_clan
Cotton_A_11068_CDS 1176 1253 1169 1253 PF02738.18 Ald_Xan_dh_C2 Family 473 550 550 88.0 4.9e-25 1 No_clan
Cotton_A_08521_CDS 83 356 79 356 PF07714.17 Pkinase_Tyr Domain 5 259 259 157.6 3.5e-46 1 CL0016
Cotton_A_36131_CDS 5 42 3 46 PF00646.33 F-box Domain 6 43 48 42.5 4e-11 1 CL0271
Cotton_A_36131_CDS 205 308 203 335 PF07734.13 FBA_1 Family 3 104 164 36.8 3.5e-09 1 CL0162
Cotton_A_21801_CDS 1 155 1 155 PF00407.19 Bet_v_1 Domain 1 151 151 80.6 1.1e-22 1 CL0209
Cotton_A_27045_CDS 114 144 111 144 PF06200.14 tify Domain 4 34 34 59.5 1.4e-16 1 No_clan
Cotton_A_19837_CDS 3 180 1 197 PF00955.21 HCO3_cotransp Family 3 174 508 121.6 3.9e-35 1 CL0062
Cotton_A_19837_CDS 202 367 183 372 PF00955.21 HCO3_cotransp Family 246 411 508 82.0 4e-23 1 CL0062
Cotton_A_19837_CDS 455 545 451 546 PF00955.21 HCO3_cotransp Family 423 507 508 70.4 1.3e-19 1 CL0062
Cotton_A_35830_CDS 185 393 185 402 PF00225.23 Kinesin Domain 1 222 333 162.6 1.1e-47 1 CL0023
Cotton_A_38970_CDS 81 353 80 362 PF00295.17 Glyco_hydro_28 Domain 59 323 325 291.2 8.8e-87 1 CL0268
Cotton_A_17922_CDS 13 90 4 92 PF00125.24 Histone Domain 51 129 131 54.1 2e-14 1 CL0012
Cotton_A_17922_CDS 93 127 93 127 PF16211.5 Histone_H2A_C Family 1 35 35 66.5 1.2e-18 1 No_clan
Cotton_A_38421_CDS 106 311 106 311 PF07816.11 DUF1645 Family 1 191 191 171.2 3.7e-50 1 No_clan
Cotton_A_21374_CDS 1 43 1 44 PF08063.12 PADR1 Domain 9 52 53 52.6 2.9e-14 1 CL0306
Cotton_A_21374_CDS 98 171 94 171 PF00533.26 BRCT Family 6 79 79 32.2 1e-07 1 CL0459
Cotton_A_21374_CDS 224 302 224 305 PF05406.15 WGR Domain 1 78 80 66.2 2e-18 1 No_clan
Cotton_A_21374_CDS 336 467 336 467 PF02877.14 PARP_reg Domain 1 136 136 114.9 2.9e-33 1 No_clan
Cotton_A_21374_CDS 481 671 481 675 PF00644.20 PARP Family 1 184 195 231.4 6.8e-69 1 CL0084
Cotton_A_01930_CDS 117 304 116 304 PF04669.13 Polysacc_synt_4 Family 2 190 190 213.0 2.7e-63 1 No_clan
Cotton_A_21403_CDS 458 680 457 744 PF00069.25 Pkinase Domain 2 205 264 148.5 2.3e-43 1 CL0016
Cotton_A_21748_CDS 4 71 4 71 PF00226.31 DnaJ Domain 1 63 63 63.3 1.7e-17 1 CL0392
Cotton_A_21748_CDS 180 229 177 234 PF00076.22 RRM_1 Domain 7 59 70 26.7 3.7e-06 1 CL0221
Cotton_A_35617_CDS 28 98 25 117 PF00564.24 PB1 Domain 5 73 84 55.5 3.9e-15 1 CL0072
Cotton_A_34907_CDS 58 149 51 149 PF14215.6 bHLH-MYC_N Family 93 175 175 58.1 1.3e-15 1 CL0161
Cotton_A_29234_CDS 15 64 14 65 PF03939.13 Ribosomal_L23eN Family 2 50 51 66.7 1.6e-18 1 No_clan
Cotton_A_29234_CDS 74 136 73 146 PF00276.20 Ribosomal_L23 Family 2 76 86 52.8 3.7e-14 1 No_clan
Cotton_A_33609_CDS 142 338 141 338 PF03924.13 CHASE Domain 2 188 188 126.4 1.2e-36 1 CL0165
Cotton_A_33609_CDS 426 491 426 491 PF00512.25 HisKA Domain 1 67 67 61.4 6.2e-17 1 CL0025
Cotton_A_33609_CDS 538 694 538 697 PF02518.26 HATPase_c Domain 1 109 112 99.9 1.2e-28 1 CL0025
Cotton_A_33609_CDS 870 1001 870 1003 PF00072.24 Response_reg Domain 1 110 112 69.9 1.8e-19 1 CL0304
Cotton_A_26877_CDS 3 76 3 77 PF00240.23 ubiquitin Domain 1 71 72 56.3 2e-15 1 CL0072
Cotton_A_26877_CDS 150 187 149 187 PF00627.31 UBA Domain 3 37 37 52.5 3.3e-14 1 CL0214
Cotton_A_26877_CDS 248 303 248 304 PF09280.11 XPC-binding Domain 1 56 57 75.6 1.8e-21 1 No_clan
Cotton_A_26877_CDS 329 364 328 364 PF00627.31 UBA Domain 2 37 37 45.2 6.2e-12 1 CL0214
Cotton_A_26055_CDS 55 97 54 97 PF08263.12 LRRNT_2 Family 2 41 41 38.1 1.4e-09 1 No_clan
Cotton_A_26055_CDS 430 687 427 687 PF07714.17 Pkinase_Tyr Domain 5 259 259 101.9 3.4e-29 1 CL0016
Cotton_A_20084_CDS 155 181 155 182 PF01239.22 PPTA Repeat 1 27 28 22.1 9.1e-05 1 CL0020
Cotton_A_13228_CDS 111 502 109 502 PF09243.10 Rsm22 Family 3 275 275 196.6 4.9e-58 1 CL0063
Cotton_A_00485_CDS 40 237 39 240 PF00194.21 Carb_anhydrase Domain 2 211 254 123.0 1.5e-35 1 No_clan
Cotton_A_08343_CDS 25 106 12 106 PF14368.6 LTP_2 Family 17 97 97 48.5 6.8e-13 1 CL0482
Cotton_A_04276_CDS 103 203 102 203 PF00085.20 Thioredoxin Domain 2 103 103 108.9 1.1e-31 1 CL0172
Cotton_A_04276_CDS 245 415 238 418 PF13848.6 Thioredoxin_6 Domain 14 181 184 96.9 1.3e-27 1 CL0172
Cotton_A_04276_CDS 441 526 440 545 PF00085.20 Thioredoxin Domain 2 87 103 74.0 7.7e-21 1 CL0172
Cotton_A_18291_CDS 73 158 73 158 PF03330.18 DPBB_1 Domain 1 83 83 80.2 1e-22 1 CL0199
Cotton_A_18291_CDS 169 247 169 247 PF01357.21 Pollen_allerg_1 Domain 1 80 80 90.9 3.8e-26 1 CL0159
Cotton_A_06255_CDS 2 63 1 92 PF18052.1 Rx_N Domain 22 83 93 52.6 4.1e-14 1 No_clan
Cotton_A_08916_CDS 25 146 25 146 PF10950.8 Organ_specific Family 1 117 117 120.0 8.4e-35 1 No_clan
Cotton_A_29061_CDS 6 165 5 165 PF13967.6 RSN1_TM Family 2 156 156 130.7 3.7e-38 1 No_clan
Cotton_A_29061_CDS 186 399 186 399 PF14703.6 PHM7_cyt Domain 1 176 176 100.1 1.7e-28 1 CL0221
Cotton_A_29061_CDS 410 678 410 678 PF02714.15 RSN1_7TM Family 1 274 274 237.2 2.1e-70 1 CL0416
Cotton_A_00631_CDS 80 231 54 234 PF00481.21 PP2C Family 35 172 258 55.9 4.6e-15 1 CL0238
Cotton_A_27624_CDS 36 505 35 506 PF00232.18 Glyco_hydro_1 Domain 2 452 453 515.7 8e-155 1 CL0058
Cotton_A_41147_CDS 59 113 59 113 PF00249.31 Myb_DNA-binding Domain 1 46 46 43.9 2e-11 1 CL0123
Cotton_A_41147_CDS 119 165 119 165 PF00249.31 Myb_DNA-binding Domain 1 46 46 61.6 5.9e-17 1 CL0123
Cotton_A_41147_CDS 171 214 171 216 PF00249.31 Myb_DNA-binding Domain 1 44 46 56.4 2.5e-15 1 CL0123
Cotton_A_06227_CDS 151 234 151 238 PF03088.16 Str_synth Family 1 84 89 93.3 7.4e-27 1 CL0186
Cotton_A_01760_CDS 22 499 22 499 PF13001.7 Ecm29 Family 1 497 497 495.3 1.8e-148 1 No_clan
Cotton_A_10204_CDS 30 91 29 98 PF08240.12 ADH_N Domain 2 62 109 35.3 8.1e-09 1 CL0296
Cotton_A_10204_CDS 195 308 195 308 PF13602.6 ADH_zinc_N_2 Domain 1 133 133 73.7 2.8e-20 1 CL0063
Cotton_A_01958_CDS 48 165 47 168 PF06206.11 CpeT Family 2 114 182 91.9 4.5e-26 1 CL0116
Cotton_A_40170_CDS 13 99 12 100 PF03083.16 MtN3_slv Family 2 86 87 78.8 2.4e-22 1 CL0141
Cotton_A_40170_CDS 135 218 134 220 PF03083.16 MtN3_slv Family 2 85 87 96.6 6.4e-28 1 CL0141
Cotton_A_01096_CDS 54 124 50 145 PF00561.20 Abhydrolase_1 Domain 20 91 257 31.8 1.1e-07 1 CL0028
Cotton_A_32834_CDS 200 336 197 337 PF10409.9 PTEN_C2 Family 4 134 135 96.1 1.4e-27 1 CL0154
Cotton_A_28821_CDS 11 157 3 173 PF00067.22 p450 Domain 88 234 463 35.4 5e-09 1 No_clan
Cotton_A_12094_CDS 331 359 323 359 PF00400.32 WD40 Repeat 8 38 38 21.4 0.00034 1 CL0186
Cotton_A_12094_CDS 372 401 363 401 PF00400.32 WD40 Repeat 10 38 38 18.5 0.0026 1 CL0186
Cotton_A_06371_CDS 8 130 1 130 PF00134.23 Cyclin_N Domain 10 127 127 94.8 3.3e-27 1 CL0065
Cotton_A_06371_CDS 132 212 132 214 PF02984.19 Cyclin_C Domain 1 76 119 44.2 1.8e-11 1 CL0065
Cotton_A_04560_CDS 10 57 10 57 PF00319.18 SRF-TF Domain 1 48 48 91.0 2.3e-26 1 No_clan
Cotton_A_04560_CDS 86 171 76 172 PF01486.17 K-box Family 7 92 93 88.9 1.9e-25 1 No_clan
Cotton_A_22216_CDS 190 241 189 242 PF14416.6 PMR5N Domain 2 52 53 76.3 1.7e-21 1 No_clan
Cotton_A_22216_CDS 243 528 243 529 PF13839.6 PC-Esterase Family 1 282 283 332.2 3.2e-99 1 CL0264
Cotton_A_25398_CDS 129 254 128 254 PF05542.11 DUF760 Family 2 84 84 85.8 1.9e-24 1 No_clan
Cotton_A_22478_CDS 6 64 2 76 PF13456.6 RVT_3 Domain 38 98 124 25.0 1.3e-05 1 CL0219
Cotton_A_36339_CDS 98 140 98 141 PF06203.14 CCT Motif 1 43 44 70.2 1.1e-19 1 CL0281
Cotton_A_20646_CDS 214 250 212 250 PF00400.32 WD40 Repeat 3 38 38 23.7 6.1e-05 1 CL0186
Cotton_A_20646_CDS 261 295 258 295 PF00400.32 WD40 Repeat 5 38 38 14.7 0.043 1 CL0186
Cotton_A_20646_CDS 299 338 299 339 PF00400.32 WD40 Repeat 1 37 38 19.1 0.0017 1 CL0186
Cotton_A_20646_CDS 431 467 426 467 PF00400.32 WD40 Repeat 6 38 38 13.7 0.09 1 CL0186
Cotton_A_20646_CDS 473 509 471 509 PF00400.32 WD40 Repeat 3 37 38 29.6 8.5e-07 1 CL0186
Cotton_A_08679_CDS 122 179 121 181 PF13855.6 LRR_8 Repeat 2 59 61 30.2 2.8e-07 1 CL0022
Cotton_A_08679_CDS 381 632 378 633 PF07714.17 Pkinase_Tyr Domain 5 258 259 97.5 7.4e-28 1 CL0016
Cotton_A_34243_CDS 3 42 2 47 PF00646.33 F-box Domain 4 43 48 32.3 6.3e-08 1 CL0271
Cotton_A_34243_CDS 113 243 113 259 PF07734.13 FBA_1 Family 1 138 164 28.2 1.5e-06 1 CL0162
Cotton_A_05955_CDS 138 194 138 194 PF11961.8 DUF3475 Family 1 57 57 78.6 2.8e-22 1 No_clan
Cotton_A_05955_CDS 342 427 342 427 PF05003.12 DUF668 Family 1 89 89 119.9 4.7e-35 1 No_clan
Cotton_A_17317_CDS 159 279 158 280 PF01794.19 Ferric_reduct Family 2 124 125 63.8 1.6e-17 1 CL0328
Cotton_A_17317_CDS 315 416 311 416 PF08022.12 FAD_binding_8 Domain 6 109 109 67.3 1.1e-18 1 CL0076
Cotton_A_17317_CDS 422 700 422 700 PF08030.12 NAD_binding_6 Domain 1 156 156 78.8 4.6e-22 1 CL0091
Cotton_A_10986_CDS 38 138 30 144 PF04410.14 Gar1 Domain 11 124 154 117.5 4.2e-34 1 CL0575
Cotton_A_18462_CDS 134 244 134 245 PF04059.12 RRM_2 Family 1 96 97 71.4 5.6e-20 1 CL0221
Cotton_A_03213_CDS 19 55 17 55 PF00400.32 WD40 Repeat 3 38 38 31.8 1.7e-07 1 CL0186
Cotton_A_03213_CDS 61 97 59 97 PF00400.32 WD40 Repeat 3 38 38 36.8 4.4e-09 1 CL0186
Cotton_A_03213_CDS 103 139 102 140 PF00400.32 WD40 Repeat 2 37 38 37.7 2.4e-09 1 CL0186
Cotton_A_03213_CDS 144 181 144 181 PF00400.32 WD40 Repeat 1 37 38 38.0 1.9e-09 1 CL0186
Cotton_A_03213_CDS 187 225 186 225 PF00400.32 WD40 Repeat 2 38 38 17.1 0.0077 1 CL0186
Cotton_A_03213_CDS 229 270 229 270 PF00400.32 WD40 Repeat 1 38 38 26.2 1e-05 1 CL0186
Cotton_A_03213_CDS 278 313 275 314 PF00400.32 WD40 Repeat 5 37 38 16.3 0.013 1 CL0186
Cotton_A_34540_CDS 4 418 1 426 PF00854.21 PTR2 Family 10 387 395 299.3 3.8e-89 1 CL0015
Cotton_A_25558_CDS 281 518 279 557 PF05346.11 DUF747 Family 3 243 319 243.5 3.8e-72 1 No_clan
Cotton_A_25558_CDS 566 642 565 642 PF04640.14 PLATZ Family 2 82 82 92.1 2.4e-26 1 No_clan
Cotton_A_18375_CDS 14 40 14 40 PF13961.6 DUF4219 Domain 1 27 27 36.7 2.3e-09 1 CL0523
Cotton_A_18375_CDS 51 155 49 158 PF14223.6 Retrotran_gag_2 Family 29 128 138 66.6 1.7e-18 1 CL0523
Cotton_A_34694_CDS 23 202 23 203 PF12710.7 HAD Family 1 187 188 52.2 9.6e-14 1 CL0137
Cotton_A_35783_CDS 237 416 237 416 PF04833.15 COBRA Family 1 165 165 180.8 1.8e-53 1 No_clan
Cotton_A_12090_CDS 493 536 492 536 PF13639.6 zf-RING_2 Domain 2 44 44 46.2 4e-12 1 CL0229
Cotton_A_27237_CDS 39 95 39 95 PF08246.12 Inhibitor_I29 Domain 1 58 58 46.5 3.6e-12 1 No_clan
Cotton_A_27237_CDS 124 340 124 340 PF00112.23 Peptidase_C1 Domain 1 218 218 278.0 7.2e-83 1 CL0125
Cotton_A_30975_CDS 11 109 11 123 PF00318.20 Ribosomal_S2 Family 1 96 215 36.7 2.4e-09 1 CL0067
Cotton_A_30975_CDS 127 193 113 197 PF00318.20 Ribosomal_S2 Family 146 210 215 46.6 2.3e-12 1 CL0067
Cotton_A_30975_CDS 224 422 205 438 PF01704.18 UDPGP Family 33 228 413 188.9 1.2e-55 1 CL0110
Cotton_A_30975_CDS 464 601 461 601 PF01704.18 UDPGP Family 256 413 413 122.7 1.5e-35 1 CL0110
Cotton_A_24265_CDS 19 90 14 94 PF05691.12 Raffinose_syn Family 7 91 750 42.2 2.4e-11 1 CL0058
Cotton_A_33722_CDS 21 137 21 139 PF00069.25 Pkinase Domain 1 120 264 93.9 1e-26 1 CL0016
Cotton_A_33722_CDS 162 323 157 323 PF00069.25 Pkinase Domain 117 264 264 117.6 6.1e-34 1 CL0016
Cotton_A_30731_CDS 423 445 414 447 PF13181.6 TPR_8 Repeat 10 32 34 12.3 0.16 1 CL0020
Cotton_A_05110_CDS 10 50 8 52 PF00394.22 Cu-oxidase Domain 67 107 159 40.0 4e-10 1 CL0026
Cotton_A_16660_CDS 4 325 4 325 PF01112.18 Asparaginase_2 Domain 1 306 306 370.5 5.2e-111 1 CL0052
Cotton_A_02315_CDS 85 140 82 166 PF01429.19 MBD Domain 4 58 77 25.4 8.6e-06 1 CL0081
Cotton_A_02315_CDS 186 232 178 268 PF01429.19 MBD Domain 11 57 77 24.4 1.7e-05 1 CL0081
Cotton_A_38602_CDS 59 189 58 190 PF01380.22 SIS Domain 2 130 131 68.1 6.3e-19 1 CL0067
Cotton_A_38602_CDS 219 276 219 277 PF00571.28 CBS Domain 1 56 57 22.6 0.00011 1 No_clan
Cotton_A_38602_CDS 287 342 287 344 PF00571.28 CBS Domain 1 54 57 31.4 1.9e-07 1 No_clan
Cotton_A_18610_CDS 91 310 89 326 PF00067.22 p450 Domain 221 445 463 246.4 4.9e-73 1 No_clan
Cotton_A_01202_CDS 4 32 4 33 PF17814.1 LisH_TPL Domain 1 29 30 24.0 2.2e-05 1 CL0561
Cotton_A_01202_CDS 494 527 487 527 PF00400.32 WD40 Repeat 8 38 38 20.4 0.00069 1 CL0186
Cotton_A_01202_CDS 532 570 531 570 PF00400.32 WD40 Repeat 2 37 38 13.5 0.1 1 CL0186
Cotton_A_01202_CDS 925 958 920 958 PF00400.32 WD40 Repeat 6 38 38 21.1 0.0004 1 CL0186
Cotton_A_16226_CDS 62 125 62 134 PF00899.21 ThiF Domain 1 64 244 38.2 1e-09 1 CL0063
Cotton_A_07047_CDS 266 313 266 313 PF12906.7 RINGv Domain 1 48 48 42.6 4.7e-11 1 CL0229
Cotton_A_04831_CDS 11 322 11 323 PF00657.22 Lipase_GDSL Family 1 199 200 62.2 6.2e-17 1 CL0264
Cotton_A_22693_CDS 4 43 3 44 PF18511.1 F-box_5 Domain 2 41 42 74.1 4.8e-21 1 CL0271
Cotton_A_22693_CDS 63 109 63 109 PF18791.1 Transp_inhibit Family 1 47 47 82.1 1.4e-23 1 No_clan
Cotton_A_17513_CDS 38 496 38 518 PF01384.20 PHO4 Family 1 310 337 155.2 2.3e-45 1 No_clan
Cotton_A_04731_CDS 76 186 75 187 PF00635.26 Motile_Sperm Domain 2 107 109 96.1 1e-27 1 CL0556
Cotton_A_31516_CDS 152 234 152 234 PF13225.6 DUF4033 Family 1 89 89 127.3 1.6e-37 1 No_clan
Cotton_A_21129_CDS 57 388 56 388 PF07992.14 Pyr_redox_2 Domain 2 294 294 206.5 4.9e-61 1 CL0063
Cotton_A_17498_CDS 52 376 52 377 PF12819.7 Malectin_like Domain 1 335 336 273.7 2.1e-81 1 CL0202
Cotton_A_17498_CDS 432 488 428 488 PF13855.6 LRR_8 Repeat 5 61 61 32.9 4.1e-08 1 CL0022
Cotton_A_17498_CDS 594 872 592 872 PF07714.17 Pkinase_Tyr Domain 3 259 259 158.8 1.5e-46 1 CL0016
Cotton_A_17498_CDS 958 1269 956 1269 PF00657.22 Lipase_GDSL Family 3 200 200 60.7 1.8e-16 1 CL0264
Cotton_A_05564_CDS 24 112 11 112 PF14368.6 LTP_2 Family 15 97 97 47.8 1.2e-12 1 CL0482
Cotton_A_02715_CDS 10 221 9 259 PF00483.23 NTP_transferase Family 2 211 248 101.3 6.2e-29 1 CL0110
Cotton_A_02715_CDS 301 328 295 334 PF00132.24 Hexapep Repeat 8 35 36 20.8 0.00023 1 CL0536
Cotton_A_24476_CDS 10 57 10 57 PF00319.18 SRF-TF Domain 1 48 48 89.4 7.2e-26 1 No_clan
Cotton_A_24476_CDS 114 183 110 189 PF01486.17 K-box Family 4 73 93 31.8 1.2e-07 1 No_clan
Cotton_A_22188_CDS 29 170 25 171 PF07842.12 GCFC Family 92 239 277 152.4 1.9e-44 1 No_clan
Cotton_A_33827_CDS 372 420 370 420 PF00010.26 HLH Domain 3 53 53 26.6 4.3e-06 1 No_clan
Cotton_A_09252_CDS 38 255 37 256 PF00119.20 ATP-synt_A Domain 2 210 211 145.0 2.9e-42 1 No_clan
Cotton_A_24248_CDS 41 146 39 146 PF04398.12 DUF538 Family 3 112 112 103.8 6.7e-30 1 No_clan
Cotton_A_09761_CDS 6 92 2 93 PF13456.6 RVT_3 Domain 36 123 124 35.8 5.7e-09 1 CL0219
Cotton_A_02616_CDS 37 128 22 128 PF14368.6 LTP_2 Family 11 97 97 53.8 1.6e-14 1 CL0482
Cotton_A_02616_CDS 163 252 148 252 PF14368.6 LTP_2 Family 13 97 97 54.3 1.1e-14 1 CL0482
Cotton_A_19503_CDS 46 171 45 172 PF03169.15 OPT Family 2 114 616 89.5 2e-25 1 No_clan
Cotton_A_08187_CDS 120 277 118 277 PF14299.6 PP2 Family 3 146 146 133.0 7.8e-39 1 No_clan
Cotton_A_26836_CDS 214 450 67 456 PF00201.18 UDPGT Family 196 417 499 81.8 4.5e-23 1 CL0113
Cotton_A_40498_CDS 28 78 22 78 PF07333.12 SLR1-BP Domain 7 58 58 43.2 4e-11 1 CL0054
Cotton_A_38295_CDS 129 214 129 214 PF01985.21 CRS1_YhbY Domain 1 84 84 72.9 1.7e-20 1 No_clan
Cotton_A_38295_CDS 249 332 249 332 PF01985.21 CRS1_YhbY Domain 1 84 84 44.6 1.2e-11 1 No_clan
Cotton_A_03941_CDS 2 147 2 147 PF02580.16 Tyr_Deacylase Family 1 144 144 177.9 1.6e-52 1 No_clan
Cotton_A_12854_CDS 52 108 52 108 PF06886.11 TPX2 Family 1 57 57 69.3 2.4e-19 1 No_clan
Cotton_A_08541_CDS 4 224 4 235 PF06075.12 DUF936 Family 1 217 692 249.6 9.4e-74 1 No_clan
Cotton_A_08541_CDS 230 324 222 325 PF06075.12 DUF936 Family 336 432 692 47.7 1.1e-12 1 No_clan
Cotton_A_32243_CDS 56 164 56 166 PF14226.6 DIOX_N Family 2 117 118 74.9 8.6e-21 1 CL0029
Cotton_A_32243_CDS 209 311 207 313 PF03171.20 2OG-FeII_Oxy Domain 4 99 101 83.2 1.5e-23 1 CL0029
Cotton_A_16491_CDS 93 152 79 164 PF00504.21 Chloroa_b-bind Family 31 101 161 23.4 6.8e-05 1 No_clan
Cotton_A_08928_CDS 431 486 430 486 PF13855.6 LRR_8 Repeat 2 61 61 36.9 2.2e-09 1 CL0022
Cotton_A_08928_CDS 520 533 518 534 PF13516.6 LRR_6 Repeat 4 17 24 9.1 1.5 1 CL0022
Cotton_A_28015_CDS 31 85 31 85 PF04863.13 EGF_alliinase Domain 1 55 55 92.8 1.2e-26 1 CL0001
Cotton_A_28015_CDS 87 441 87 442 PF04864.13 Alliinase_C Domain 1 362 363 498.5 9.1e-150 1 CL0061
Cotton_A_11954_CDS 34 131 34 132 PF03195.14 LOB Family 1 98 99 140.0 2.9e-41 1 No_clan
Cotton_A_41183_CDS 521 565 520 566 PF02213.16 GYF Domain 3 44 45 40.1 2.1e-10 1 CL0673
Cotton_A_03900_CDS 50 934 49 935 PF11145.8 DUF2921 Family 2 893 894 900.5 1.1e-270 1 No_clan
Cotton_A_12776_CDS 30 133 29 133 PF13947.6 GUB_WAK_bind Domain 2 106 106 96.5 1.4e-27 1 No_clan
Cotton_A_12776_CDS 278 311 278 318 PF07645.15 EGF_CA Domain 1 35 42 28.5 1.3e-06 1 CL0001
Cotton_A_07990_CDS 29 135 27 140 PF03656.13 Pam16 Family 3 114 127 68.3 5.9e-19 1 CL0392
Cotton_A_24075_CDS 75 200 75 200 PF07542.11 ATP12 Family 1 129 129 111.6 2.6e-32 1 No_clan
Cotton_A_01908_CDS 11 144 9 146 PF05859.12 Mis12 Family 4 133 135 78.0 6.5e-22 1 No_clan
Cotton_A_03266_CDS 17 74 17 85 PF00076.22 RRM_1 Domain 1 57 70 52.2 3.9e-14 1 CL0221
Cotton_A_03266_CDS 105 168 105 175 PF00076.22 RRM_1 Domain 1 63 70 54.5 7.5e-15 1 CL0221
Cotton_A_38605_CDS 6 177 6 179 PF00106.25 adh_short Domain 1 161 195 65.1 5.5e-18 1 CL0063
Cotton_A_12554_CDS 115 188 94 188 PF14380.6 WAK_assoc Domain 29 104 104 71.0 1.1e-19 1 No_clan
Cotton_A_12554_CDS 264 327 262 331 PF07714.17 Pkinase_Tyr Domain 3 73 259 36.9 2.4e-09 1 CL0016
Cotton_A_08942_CDS 1944 2003 1836 2003 PF00856.28 SET Family 122 169 169 44.4 2.3e-11 1 No_clan
Cotton_A_33501_CDS 28 213 10 213 PF03006.20 HlyIII Family 37 224 224 212.0 8.8e-63 1 CL0192
Cotton_A_37001_CDS 4 53 1 53 PF12776.7 Myb_DNA-bind_3 Domain 50 96 96 32.3 1.5e-07 1 CL0123
Cotton_A_14529_CDS 154 329 154 329 PF06911.12 Senescence Family 1 183 183 152.2 1.9e-44 1 No_clan
Cotton_A_29133_CDS 132 186 131 186 PF02045.15 CBFB_NFYA Family 2 56 56 88.5 3.1e-25 1 No_clan
Cotton_A_18072_CDS 493 613 493 613 PF01778.17 Ribosomal_L28e Family 1 115 115 114.7 3.7e-33 1 No_clan
Cotton_A_35026_CDS 63 118 59 118 PF13855.6 LRR_8 Repeat 5 61 61 33.6 2.3e-08 1 CL0022
Cotton_A_35026_CDS 200 259 200 259 PF13855.6 LRR_8 Repeat 2 61 61 30.6 2e-07 1 CL0022
Cotton_A_25135_CDS 38 116 38 116 PF02298.17 Cu_bind_like Domain 1 84 84 92.8 9.7e-27 1 CL0026
Cotton_A_40586_CDS 299 804 299 804 PF03141.16 Methyltransf_29 Family 1 506 506 770.2 8.1e-232 1 CL0063
Cotton_A_09101_CDS 61 599 61 600 PF02990.16 EMP70 Family 1 518 519 754.8 4.6e-227 1 No_clan
Cotton_A_39639_CDS 30 70 29 70 PF08263.12 LRRNT_2 Family 2 39 41 24.3 2.9e-05 1 No_clan
Cotton_A_39639_CDS 126 142 126 147 PF00560.33 LRR_1 Repeat 1 17 23 10.9 0.57 1 CL0022
Cotton_A_39639_CDS 151 208 150 209 PF13855.6 LRR_8 Repeat 3 60 61 30.0 3.3e-07 1 CL0022
Cotton_A_39639_CDS 251 286 251 294 PF12799.7 LRR_4 Repeat 1 36 44 27.7 2.6e-06 1 CL0022
Cotton_A_39639_CDS 319 335 319 336 PF13516.6 LRR_6 Repeat 1 17 24 11.6 0.23 1 CL0022
Cotton_A_39639_CDS 436 451 435 453 PF13516.6 LRR_6 Repeat 2 17 24 12.4 0.13 1 CL0022
Cotton_A_39639_CDS 784 984 781 1053 PF00069.25 Pkinase Domain 5 196 264 91.9 4.1e-26 1 CL0016
Cotton_A_10838_CDS 58 127 57 127 PF17181.4 EPF Family 2 53 53 69.3 2.1e-19 1 No_clan
Cotton_A_17186_CDS 40 175 39 176 PF05903.14 Peptidase_C97 Domain 2 150 151 146.5 5.1e-43 1 CL0125
Cotton_A_34296_CDS 16 359 16 360 PF04928.17 PAP_central Domain 1 247 248 371.6 1.2e-111 1 No_clan
Cotton_A_34296_CDS 81 166 74 171 PF01909.23 NTP_transf_2 Family 5 90 95 45.5 7e-12 1 CL0260
Cotton_A_34296_CDS 363 421 362 424 PF04926.15 PAP_RNA-bind Domain 2 59 171 47.0 2.1e-12 1 No_clan
Cotton_A_34296_CDS 421 493 417 495 PF04926.15 PAP_RNA-bind Domain 98 169 171 24.5 1.8e-05 1 No_clan
Cotton_A_16144_CDS 128 155 128 155 PF01535.20 PPR Family 4 31 31 20.6 0.00034 1 CL0020
Cotton_A_16144_CDS 156 186 156 186 PF01535.20 PPR Family 1 31 31 26.3 5.3e-06 1 CL0020
Cotton_A_16144_CDS 253 300 253 302 PF13041.6 PPR_2 Repeat 1 48 50 44.5 1.3e-11 1 CL0020
Cotton_A_16144_CDS 355 401 354 403 PF13041.6 PPR_2 Repeat 2 48 50 40.7 2e-10 1 CL0020
Cotton_A_16144_CDS 431 455 430 457 PF01535.20 PPR Family 5 29 31 11.1 0.38 1 CL0020
Cotton_A_16144_CDS 456 504 455 504 PF13041.6 PPR_2 Repeat 2 50 50 50.7 1.5e-13 1 CL0020
Cotton_A_16144_CDS 531 557 531 558 PF01535.20 PPR Family 4 30 31 19.2 0.00098 1 CL0020
Cotton_A_16144_CDS 559 589 559 589 PF01535.20 PPR Family 1 31 31 30.4 2.6e-07 1 CL0020
Cotton_A_00950_CDS 150 244 150 244 PF04504.14 DUF573 Family 1 95 95 124.0 2.9e-36 1 CL0123
Cotton_A_33112_CDS 172 434 172 434 PF00069.25 Pkinase Domain 1 264 264 242.3 5.7e-72 1 CL0016
Cotton_A_02735_CDS 44 182 44 184 PF01565.23 FAD_binding_4 Domain 1 136 139 86.3 1.6e-24 1 CL0077
Cotton_A_02735_CDS 437 500 437 500 PF08031.12 BBE Domain 1 46 46 75.1 3.2e-21 1 CL0277
Cotton_A_01000_CDS 248 301 231 302 PF00364.22 Biotin_lipoyl Domain 19 72 73 32.3 6.4e-08 1 CL0105
Cotton_A_08724_CDS 80 330 58 336 PF00481.21 PP2C Family 31 251 258 120.5 9.4e-35 1 CL0238
Cotton_A_36708_CDS 341 513 341 513 PF12214.8 TPX2_importin Family 1 166 166 197.1 2.3e-58 1 No_clan
Cotton_A_36708_CDS 674 730 674 730 PF06886.11 TPX2 Family 1 57 57 62.7 2.8e-17 1 No_clan
Cotton_A_06980_CDS 320 390 320 392 PF04564.15 U-box Domain 1 71 73 75.1 3.6e-21 1 CL0229
Cotton_A_06980_CDS 447 486 447 487 PF00514.23 Arm Repeat 1 40 41 40.6 1.7e-10 1 CL0020
Cotton_A_06980_CDS 530 568 530 569 PF00514.23 Arm Repeat 2 40 41 31.5 1.2e-07 1 CL0020
Cotton_A_06980_CDS 612 651 611 651 PF00514.23 Arm Repeat 2 41 41 21.9 0.00013 1 CL0020
Cotton_A_03372_CDS 608 666 607 666 PF03828.19 PAP_assoc Family 2 62 62 72.0 3.5e-20 1 No_clan
Cotton_A_03299_CDS 74 220 74 220 PF13365.6 Trypsin_2 Domain 1 150 150 60.8 2.7e-16 1 CL0124
Cotton_A_03299_CDS 305 357 305 357 PF17820.1 PDZ_6 Domain 1 56 56 31.7 9.8e-08 1 CL0466
Cotton_A_03299_CDS 373 446 373 448 PF12812.7 PDZ_1 Domain 1 75 78 54.9 6.7e-15 1 CL0466
Cotton_A_13026_CDS 9 145 8 147 PF00235.19 Profilin Domain 2 125 127 47.8 1.6e-12 1 CL0431
Cotton_A_13583_CDS 43 199 41 202 PF01764.25 Lipase_3 Family 3 138 142 74.0 1.1e-20 1 CL0028
Cotton_A_13583_CDS 414 523 414 523 PF18117.1 EDS1_EP Domain 1 107 107 116.7 6.2e-34 1 No_clan
Cotton_A_10564_CDS 19 264 19 265 PF00856.28 SET Family 1 168 169 34.7 2.1e-08 1 No_clan
Cotton_A_29161_CDS 75 248 74 341 PF04321.17 RmlD_sub_bind Domain 2 166 287 49.6 2.9e-13 1 CL0063
Cotton_A_19736_CDS 461 640 429 766 PF00176.23 SNF2_N Family 55 239 350 73.5 1.2e-20 1 CL0023
Cotton_A_19736_CDS 790 905 788 906 PF00271.31 Helicase_C Family 3 110 111 36.2 6.2e-09 1 CL0023
Cotton_A_26409_CDS 24 67 24 69 PF00249.31 Myb_DNA-binding Domain 1 44 46 48.1 9.5e-13 1 CL0123
Cotton_A_26928_CDS 8 66 8 67 PF13921.6 Myb_DNA-bind_6 Domain 1 58 60 65.3 4.4e-18 1 CL0123
Cotton_A_31441_CDS 33 81 32 81 PF08263.12 LRRNT_2 Family 2 41 41 25.6 1.1e-05 1 No_clan
Cotton_A_03843_CDS 18 123 16 126 PF01412.18 ArfGap Domain 3 114 117 139.1 6.3e-41 1 No_clan
Cotton_A_29968_CDS 14 279 2 280 PF00850.19 Hist_deacetyl Domain 29 306 307 268.2 1.1e-79 1 CL0302
Cotton_A_24933_CDS 180 239 180 243 PF02485.21 Branch Family 1 62 247 46.0 4.7e-12 1 CL0110
Cotton_A_28835_CDS 94 122 94 129 PF08059.13 SEP Domain 1 29 76 35.4 1.2e-08 1 No_clan
Cotton_A_29112_CDS 63 167 63 177 PF14226.6 DIOX_N Family 2 104 118 83.1 2.5e-23 1 CL0029
Cotton_A_29112_CDS 225 323 224 323 PF03171.20 2OG-FeII_Oxy Domain 2 101 101 93.3 1.1e-26 1 CL0029
Cotton_A_00638_CDS 29 256 28 257 PF00230.20 MIP Family 2 226 227 270.2 1.4e-80 1 No_clan
Cotton_A_25528_CDS 40 295 40 295 PF01571.21 GCV_T Domain 1 257 257 299.2 2.2e-89 1 CL0289
Cotton_A_25528_CDS 323 398 323 399 PF08669.11 GCV_T_C Domain 2 78 80 60.3 1.3e-16 1 No_clan
Cotton_A_15939_CDS 10 48 10 53 PF14990.6 DUF4516 Family 1 41 46 52.4 3e-14 1 No_clan
Cotton_A_31743_CDS 24 350 23 350 PF07992.14 Pyr_redox_2 Domain 2 294 294 226.8 3.4e-67 1 CL0063
Cotton_A_31743_CDS 372 481 372 482 PF02852.22 Pyr_redox_dim Domain 1 109 110 106.3 9.6e-31 1 CL0608
Cotton_A_04306_CDS 16 226 16 227 PF01991.18 vATP-synt_E Family 1 198 199 219.0 3.8e-65 1 CL0255
Cotton_A_04053_CDS 66 150 66 151 PF03330.18 DPBB_1 Domain 1 82 83 78.9 2.6e-22 1 CL0199
Cotton_A_04053_CDS 162 239 162 239 PF01357.21 Pollen_allerg_1 Domain 1 80 80 102.6 8.7e-30 1 CL0159
Cotton_A_21155_CDS 71 133 69 133 PF13499.6 EF-hand_7 Domain 3 71 71 50.0 3.1e-13 1 CL0220
Cotton_A_21155_CDS 142 208 142 208 PF13499.6 EF-hand_7 Domain 1 71 71 51.3 1.2e-13 1 CL0220
Cotton_A_12600_CDS 1 61 1 61 PF04640.14 PLATZ Family 14 82 82 54.2 1.7e-14 1 No_clan
Cotton_A_20529_CDS 36 108 35 108 PF02778.14 tRNA_int_endo_N Domain 2 67 67 54.0 9.4e-15 1 CL0476
Cotton_A_20529_CDS 118 203 118 208 PF01974.17 tRNA_int_endo Domain 1 80 85 77.3 7.1e-22 1 CL0236
Cotton_A_22981_CDS 10 65 10 66 PF00412.22 LIM Domain 1 57 58 48.3 8.5e-13 1 CL0167
Cotton_A_39401_CDS 79 186 78 186 PF01453.24 B_lectin Domain 2 105 105 100.5 6.9e-29 1 No_clan
Cotton_A_39401_CDS 218 297 218 304 PF00954.20 S_locus_glycop Domain 1 78 111 39.3 7.9e-10 1 No_clan
Cotton_A_39401_CDS 340 399 328 399 PF08276.11 PAN_2 Domain 4 67 67 57.8 8.9e-16 1 CL0168
Cotton_A_39401_CDS 524 788 521 791 PF07714.17 Pkinase_Tyr Domain 4 256 259 156.2 9.4e-46 1 CL0016
Cotton_A_32449_CDS 45 240 45 241 PF03087.14 DUF241 Family 1 205 234 163.9 5.4e-48 1 CL0133
Cotton_A_10681_CDS 70 114 70 114 PF12023.8 DUF3511 Family 1 45 45 65.2 3.2e-18 1 No_clan
Cotton_A_38828_CDS 3 38 3 40 PF02736.19 Myosin_N Domain 1 37 40 37.1 2e-09 1 CL0010
Cotton_A_38828_CDS 56 495 56 499 PF00063.21 Myosin_head Domain 1 439 677 611.0 2.4e-183 1 CL0023
Cotton_A_04905_CDS 107 173 106 174 PF00498.26 FHA Family 2 68 69 64.8 6.8e-18 1 CL0357
Cotton_A_06262_CDS 50 279 45 279 PF00481.21 PP2C Family 12 258 258 188.9 1.2e-55 1 CL0238
Cotton_A_14143_CDS 14 109 13 120 PF00168.30 C2 Domain 2 93 103 41.8 1.1e-10 1 CL0154
Cotton_A_31542_CDS 25 84 14 84 PF04718.15 ATP-synt_G Family 38 100 100 45.3 1.2e-11 1 No_clan
Cotton_A_04283_CDS 23 62 22 62 PF08263.12 LRRNT_2 Family 2 41 41 43.2 3.7e-11 1 No_clan
Cotton_A_04283_CDS 90 149 89 149 PF13855.6 LRR_8 Repeat 2 61 61 32.6 4.8e-08 1 CL0022
Cotton_A_27775_CDS 3 70 1 73 PF13417.6 GST_N_3 Domain 6 72 75 54.1 1.5e-14 1 CL0172
Cotton_A_27775_CDS 108 182 79 184 PF00043.25 GST_C Domain 21 91 93 36.7 3.8e-09 1 CL0497
Cotton_A_29076_CDS 84 135 83 135 PF13637.6 Ank_4 Repeat 3 55 55 44.6 1.4e-11 1 CL0465
Cotton_A_32050_CDS 65 146 64 148 PF03101.15 FAR1 Domain 2 88 90 75.3 4.5e-21 1 CL0274
Cotton_A_32050_CDS 268 361 268 362 PF10551.9 MULE Domain 1 95 96 86.7 1e-24 1 CL0219
Cotton_A_32050_CDS 568 588 555 591 PF04434.17 SWIM Domain 17 37 40 21.2 0.00017 1 No_clan
Cotton_A_26435_CDS 43 318 43 319 PF04674.12 Phi_1 Family 1 275 276 335.9 1.7e-100 1 No_clan
Cotton_A_13353_CDS 31 490 31 499 PF00067.22 p450 Domain 1 453 463 353.5 1.6e-105 1 No_clan
Cotton_A_28461_CDS 23 177 23 177 PF04043.15 PMEI Domain 1 154 154 119.2 2e-34 1 No_clan
Cotton_A_00744_CDS 4 295 3 299 PF01213.19 CAP_N Family 2 313 317 273.6 2.6e-81 1 No_clan
Cotton_A_00744_CDS 318 475 317 475 PF08603.11 CAP_C Family 2 157 157 190.7 1.2e-56 1 CL0391
Cotton_A_25848_CDS 5 87 5 118 PF18052.1 Rx_N Domain 1 80 93 59.7 2.6e-16 1 No_clan
Cotton_A_35648_CDS 13 50 10 51 PF18511.1 F-box_5 Domain 4 41 42 33.2 2.9e-08 1 CL0271
Cotton_A_38924_CDS 29 108 29 109 PF13774.6 Longin Domain 1 83 84 89.8 8.6e-26 1 No_clan
Cotton_A_38924_CDS 124 195 123 202 PF00957.21 Synaptobrevin Family 2 73 89 87.0 5.4e-25 1 CL0445
Cotton_A_17384_CDS 445 626 445 630 PF00488.21 MutS_V Domain 1 183 188 115.4 3e-33 1 CL0023
Cotton_A_21717_CDS 54 78 53 78 PF01535.20 PPR Family 7 31 31 13.3 0.077 1 CL0020
Cotton_A_21717_CDS 103 163 103 165 PF13812.6 PPR_3 Repeat 1 61 63 44.3 1.4e-11 1 CL0020
Cotton_A_21717_CDS 185 234 185 234 PF13041.6 PPR_2 Repeat 1 50 50 70.2 1.2e-19 1 CL0020
Cotton_A_21717_CDS 255 304 255 304 PF13041.6 PPR_2 Repeat 1 50 50 59.6 2.5e-16 1 CL0020
Cotton_A_21717_CDS 328 374 327 374 PF13041.6 PPR_2 Repeat 4 50 50 33.2 4.5e-08 1 CL0020
Cotton_A_21717_CDS 399 428 398 428 PF01535.20 PPR Family 2 31 31 13.7 0.056 1 CL0020
Cotton_A_21717_CDS 433 462 433 463 PF01535.20 PPR Family 1 30 31 10.5 0.57 1 CL0020
Cotton_A_15584_CDS 28 429 25 430 PF00999.21 Na_H_Exchanger Family 4 380 381 190.8 3.2e-56 1 CL0064
Cotton_A_37700_CDS 2 142 1 147 PF00295.17 Glyco_hydro_28 Domain 105 243 325 154.9 2.7e-45 1 CL0268
Cotton_A_37700_CDS 144 207 141 216 PF00295.17 Glyco_hydro_28 Domain 264 323 325 41.2 1e-10 1 CL0268
Cotton_A_09170_CDS 156 459 155 459 PF00443.29 UCH Family 2 257 257 187.9 2.3e-55 1 CL0125
Cotton_A_34975_CDS 78 243 77 251 PF03092.16 BT1 Family 2 170 524 180.6 3.5e-53 1 CL0015
Cotton_A_34975_CDS 253 490 244 498 PF03092.16 BT1 Family 225 514 524 221.9 1.1e-65 1 CL0015
Cotton_A_17476_CDS 15 107 14 109 PF00855.17 PWWP Domain 2 93 96 39.3 6.4e-10 1 CL0049
Cotton_A_06692_CDS 529 735 529 736 PF00924.18 MS_channel Family 1 205 206 89.0 2.9e-25 1 No_clan
Cotton_A_38578_CDS 203 356 202 356 PF01018.22 GTP1_OBG Domain 2 155 155 171.6 8.7e-51 1 No_clan
Cotton_A_38578_CDS 359 479 359 479 PF01926.23 MMR_HSR1 Family 1 114 114 81.4 4.8e-23 1 CL0023
Cotton_A_38578_CDS 562 631 562 631 PF09269.11 DUF1967 Domain 1 70 70 62.0 3.7e-17 1 No_clan
Cotton_A_20111_CDS 6 81 2 81 PF01107.18 MP Family 73 149 191 23.7 2.9e-05 1 CL0571
Cotton_A_33272_CDS 94 472 92 472 PF00162.19 PGK Domain 3 378 378 544.0 1.7e-163 1 No_clan
Cotton_A_07701_CDS 187 260 187 261 PF03110.14 SBP Domain 1 74 75 110.9 2.6e-32 1 No_clan
Cotton_A_39594_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 56.9 1.7e-15 1 CL0123
Cotton_A_39594_CDS 67 111 67 112 PF00249.31 Myb_DNA-binding Domain 1 45 46 55.1 6.5e-15 1 CL0123
Cotton_A_05742_CDS 51 498 49 499 PF00083.24 Sugar_tr Family 4 450 452 332.8 3.3e-99 1 CL0015
Cotton_A_27882_CDS 36 271 36 282 PF01490.18 Aa_trans Family 1 219 409 221.4 1.7e-65 1 CL0062
Cotton_A_27882_CDS 296 500 292 501 PF01490.18 Aa_trans Family 215 408 409 167.6 3.5e-49 1 CL0062
Cotton_A_30646_CDS 41 153 39 155 PF07732.15 Cu-oxidase_3 Domain 3 117 119 136.0 5.7e-40 1 CL0026
Cotton_A_30646_CDS 166 316 165 318 PF00394.22 Cu-oxidase Domain 2 157 159 145.3 1.6e-42 1 CL0026
Cotton_A_30646_CDS 439 559 417 561 PF07731.14 Cu-oxidase_2 Domain 23 135 137 139.0 8e-41 1 CL0026
Cotton_A_33953_CDS 77 120 75 122 PF13041.6 PPR_2 Repeat 5 48 50 32.1 9.4e-08 1 CL0020
Cotton_A_33953_CDS 149 174 149 176 PF01535.20 PPR Family 4 29 31 12.5 0.14 1 CL0020
Cotton_A_33953_CDS 177 207 177 207 PF01535.20 PPR Family 1 31 31 18.2 0.0021 1 CL0020
Cotton_A_33953_CDS 275 323 275 325 PF13041.6 PPR_2 Repeat 1 48 50 39.0 6.6e-10 1 CL0020
Cotton_A_33953_CDS 350 375 350 377 PF01535.20 PPR Family 1 26 31 10.7 0.52 1 CL0020
Cotton_A_04760_CDS 120 280 117 280 PF08212.12 Lipocalin_2 Domain 4 146 146 33.2 4.2e-08 1 CL0116
Cotton_A_30615_CDS 28 1229 27 1230 PF02463.19 SMC_N Domain 2 219 220 205.4 7.4e-61 1 CL0023
Cotton_A_30615_CDS 557 673 556 673 PF06470.13 SMC_hinge Domain 2 117 117 76.2 2.4e-21 1 No_clan
Cotton_A_21239_CDS 5 180 2 193 PF00955.21 HCO3_cotransp Family 5 174 508 136.2 1.5e-39 1 CL0062
Cotton_A_21239_CDS 201 373 184 382 PF00955.21 HCO3_cotransp Family 245 412 508 93.9 9.9e-27 1 CL0062
Cotton_A_21239_CDS 453 543 448 544 PF00955.21 HCO3_cotransp Family 423 507 508 69.0 3.5e-19 1 CL0062
Cotton_A_38372_CDS 6 264 6 264 PF01026.21 TatD_DNase Domain 1 255 255 232.8 4.1e-69 1 CL0034
Cotton_A_18511_CDS 49 172 30 192 PF03024.14 Folate_rec Domain 16 153 172 62.6 4e-17 1 CL0644
Cotton_A_21585_CDS 105 123 103 123 PF00612.27 IQ Motif 3 21 21 25.8 5.1e-06 1 CL0220
Cotton_A_21585_CDS 126 143 125 144 PF00612.27 IQ Motif 2 19 21 14.5 0.023 1 CL0220
Cotton_A_21585_CDS 347 410 347 438 PF13178.6 DUF4005 Family 1 47 93 47.3 2.5e-12 1 No_clan
Cotton_A_14015_CDS 52 526 51 534 PF00067.22 p450 Domain 2 455 463 293.0 3.6e-87 1 No_clan
Cotton_A_29118_CDS 102 396 102 396 PF03034.15 PSS Family 1 273 273 341.7 3.9e-102 1 No_clan
Cotton_A_09143_CDS 43 203 43 204 PF00071.22 Ras Domain 1 161 162 222.8 1.7e-66 1 CL0023
Cotton_A_19345_CDS 31 332 31 332 PF16363.5 GDP_Man_Dehyd Domain 1 332 332 405.4 2.1e-121 1 CL0063
Cotton_A_31838_CDS 65 116 65 116 PF00847.20 AP2 Domain 1 54 54 46.0 4.6e-12 1 CL0081
Cotton_A_31555_CDS 238 315 231 328 PF13178.6 DUF4005 Family 2 65 93 50.2 3.2e-13 1 No_clan
Cotton_A_29912_CDS 181 227 179 227 PF00010.26 HLH Domain 4 53 53 43.6 2.1e-11 1 No_clan
Cotton_A_27817_CDS 118 172 117 173 PF00046.29 Homeodomain Domain 2 56 57 61.9 3.8e-17 1 CL0123
Cotton_A_08708_CDS 62 197 61 201 PF14541.6 TAXi_C Domain 2 142 161 75.5 4e-21 1 CL0129
Cotton_A_19128_CDS 397 560 397 562 PF03031.18 NIF Family 1 140 156 72.6 2.9e-20 1 CL0137
Cotton_A_08732_CDS 23 149 22 169 PF00071.22 Ras Domain 2 132 162 31.0 1.6e-07 1 CL0023
Cotton_A_08732_CDS 218 395 218 397 PF10199.9 Adaptin_binding Family 1 119 121 63.9 2e-17 1 No_clan
Cotton_A_20656_CDS 128 425 127 425 PF00069.25 Pkinase Domain 2 264 264 217.8 1.7e-64 1 CL0016
Cotton_A_20656_CDS 444 489 444 489 PF00433.24 Pkinase_C Family 1 46 46 27.0 5.5e-06 1 No_clan
Cotton_A_32296_CDS 35 118 26 120 PF14363.6 AAA_assoc Family 10 93 96 35.7 8.4e-09 1 No_clan
Cotton_A_32296_CDS 225 343 224 343 PF00004.29 AAA Domain 2 132 132 50.8 2.2e-13 1 CL0023
Cotton_A_11195_CDS 86 176 76 184 PF06268.13 Fascin Domain 10 99 111 26.8 4.7e-06 1 CL0066
Cotton_A_11195_CDS 235 488 220 489 PF00150.18 Cellulase Domain 31 280 281 82.6 3.2e-23 1 CL0058
Cotton_A_17452_CDS 15 171 15 173 PF00071.22 Ras Domain 1 160 162 169.3 4.9e-50 1 CL0023
Cotton_A_26774_CDS 198 424 197 466 PF03016.15 Exostosin Family 2 195 300 175.9 1.1e-51 1 No_clan
Cotton_A_10729_CDS 28 172 5 180 PF00931.22 NB-ARC Domain 95 243 252 62.2 4.2e-17 1 CL0023
Cotton_A_09121_CDS 36 419 36 419 PF12056.8 DUF3537 Family 1 390 390 487.1 3.2e-146 1 No_clan
Cotton_A_00616_CDS 12 102 5 104 PF02519.14 Auxin_inducible Family 1 85 90 90.6 5.5e-26 1 No_clan
Cotton_A_34648_CDS 25 457 25 458 PF00501.28 AMP-binding Family 1 422 423 288.0 9.6e-86 1 CL0378
Cotton_A_34648_CDS 466 545 466 545 PF13193.6 AMP-binding_C Domain 1 76 76 70.4 1.9e-19 1 CL0531
Cotton_A_23957_CDS 47 98 47 98 PF08100.11 Dimerisation Domain 1 51 51 78.0 3.8e-22 1 CL0123
Cotton_A_23957_CDS 153 358 153 358 PF00891.18 Methyltransf_2 Domain 1 210 210 252.4 2.5e-75 1 CL0063
Cotton_A_25711_CDS 90 291 88 293 PF12706.7 Lactamase_B_2 Domain 3 199 201 80.7 9.8e-23 1 CL0381
Cotton_A_12652_CDS 609 657 609 657 PF02042.15 RWP-RK Family 1 49 49 90.7 4.1e-26 1 No_clan
Cotton_A_12652_CDS 831 911 829 912 PF00564.24 PB1 Domain 3 83 84 69.4 1.9e-19 1 CL0072
Cotton_A_15785_CDS 10 127 10 127 PF02365.15 NAM Family 1 126 126 106.3 2e-30 1 No_clan
Cotton_A_37988_CDS 424 447 424 447 PF01535.20 PPR Family 8 31 31 13.3 0.075 1 CL0020
Cotton_A_37988_CDS 484 514 484 514 PF01535.20 PPR Family 1 31 31 12.7 0.12 1 CL0020
Cotton_A_37988_CDS 540 600 539 601 PF13812.6 PPR_3 Repeat 2 62 63 48.7 5.8e-13 1 CL0020
Cotton_A_37988_CDS 632 773 625 780 PF17177.4 PPR_long Domain 18 168 212 57.3 1.4e-15 1 CL0020
Cotton_A_20596_CDS 109 247 88 252 PF00270.29 DEAD Domain 15 170 176 60.6 1.6e-16 1 CL0023
Cotton_A_20596_CDS 289 394 283 395 PF00271.31 Helicase_C Family 5 110 111 70.7 1.2e-19 1 CL0023
Cotton_A_20596_CDS 492 577 491 584 PF03461.15 TRCF Domain 2 85 95 25.7 1.1e-05 1 No_clan
Cotton_A_07271_CDS 64 159 52 161 PF00787.24 PX Domain 18 111 113 50.4 1.8e-13 1 No_clan
Cotton_A_02848_CDS 3 287 3 287 PF13266.6 DUF4057 Family 1 299 299 462.0 1.1e-138 1 No_clan
Cotton_A_29088_CDS 98 340 97 364 PF00664.23 ABC_membrane Family 3 249 274 86.2 2.8e-24 1 CL0241
Cotton_A_29088_CDS 431 579 431 579 PF00005.27 ABC_tran Domain 1 137 137 96.0 2.5e-27 1 CL0023
Cotton_A_02650_CDS 14 80 13 81 PF01423.22 LSM Domain 2 66 67 67.2 7.5e-19 1 CL0527
Cotton_A_30269_CDS 76 106 73 106 PF12854.7 PPR_1 Repeat 4 34 34 29.5 4.3e-07 1 CL0020
Cotton_A_30269_CDS 109 156 108 157 PF13041.6 PPR_2 Repeat 2 49 50 40.5 2.3e-10 1 CL0020
Cotton_A_30269_CDS 184 210 184 211 PF01535.20 PPR Family 4 30 31 25.4 1e-05 1 CL0020
Cotton_A_30269_CDS 211 257 209 258 PF13041.6 PPR_2 Repeat 3 49 50 34.2 2.2e-08 1 CL0020
Cotton_A_30269_CDS 285 309 283 311 PF01535.20 PPR Family 3 27 31 13.7 0.057 1 CL0020
Cotton_A_05586_CDS 61 148 61 149 PF18036.1 Ubiquitin_4 Domain 1 88 89 100.7 3.4e-29 1 CL0072
Cotton_A_22773_CDS 7 102 1 107 PF03936.16 Terpene_synth_C Domain 130 226 267 83.4 1.6e-23 1 CL0613
Cotton_A_16166_CDS 29 243 29 243 PF00314.17 Thaumatin Domain 1 214 214 255.4 4.1e-76 1 CL0293
Cotton_A_25894_CDS 26 213 26 213 PF14215.6 bHLH-MYC_N Family 1 175 175 194.3 2e-57 1 CL0161
Cotton_A_25894_CDS 305 350 303 351 PF00010.26 HLH Domain 4 52 53 39.0 5.8e-10 1 No_clan
Cotton_A_38147_CDS 59 154 42 155 PF06749.12 DUF1218 Family 6 90 91 45.9 6.2e-12 1 No_clan
Cotton_A_01351_CDS 53 94 53 94 PF01476.20 LysM Domain 1 43 44 23.0 6.1e-05 1 CL0187
Cotton_A_18711_CDS 2 187 1 195 PF04078.13 Rcd1 Family 40 222 259 195.8 7.9e-58 1 No_clan
Cotton_A_07427_CDS 447 584 440 593 PF00931.22 NB-ARC Domain 17 145 252 25.1 8.7e-06 1 CL0023
Cotton_A_19590_CDS 40 75 38 76 PF00646.33 F-box Domain 3 38 48 23.0 5.2e-05 1 CL0271
Cotton_A_19590_CDS 154 173 153 176 PF13516.6 LRR_6 Repeat 2 20 24 11.4 0.26 1 CL0022
Cotton_A_19590_CDS 206 230 206 230 PF13516.6 LRR_6 Repeat 1 24 24 19.0 0.001 1 CL0022
Cotton_A_19590_CDS 233 256 232 256 PF13516.6 LRR_6 Repeat 2 24 24 10.5 0.51 1 CL0022
Cotton_A_06971_CDS 68 155 68 155 PF03330.18 DPBB_1 Domain 1 83 83 75.3 3.4e-21 1 CL0199
Cotton_A_06971_CDS 166 243 166 243 PF01357.21 Pollen_allerg_1 Domain 1 80 80 89.5 1.1e-25 1 CL0159
Cotton_A_29274_CDS 293 499 292 512 PF13632.6 Glyco_trans_2_3 Domain 2 186 197 73.8 1.7e-20 1 CL0110
Cotton_A_11574_CDS 70 135 67 139 PF00240.23 ubiquitin Domain 4 68 72 34.2 1.6e-08 1 CL0072
Cotton_A_29713_CDS 85 140 85 152 PF14543.6 TAXi_N Domain 1 56 178 63.9 2.1e-17 1 CL0129
Cotton_A_29713_CDS 149 268 140 269 PF14541.6 TAXi_C Domain 27 160 161 77.5 9.7e-22 1 CL0129
Cotton_A_22376_CDS 24 562 23 565 PF12070.8 SCAI Family 2 532 535 586.1 7.5e-176 1 No_clan
Cotton_A_35670_CDS 170 216 168 216 PF00010.26 HLH Domain 4 53 53 40.1 2.6e-10 1 No_clan
Cotton_A_28623_CDS 36 363 36 364 PF00657.22 Lipase_GDSL Family 1 199 200 88.5 5.7e-25 1 CL0264
Cotton_A_31388_CDS 6 47 6 62 PF00834.19 Ribul_P_3_epim Domain 1 42 198 33.9 2e-08 1 CL0036
Cotton_A_31388_CDS 60 139 51 145 PF00834.19 Ribul_P_3_epim Domain 91 167 198 73.2 1.7e-20 1 CL0036
Cotton_A_20987_CDS 92 266 91 267 PF12263.8 DUF3611 Family 2 176 177 183.2 3.9e-54 1 No_clan
Cotton_A_27818_CDS 108 150 108 150 PF03790.13 KNOX1 Family 1 43 43 83.2 7.3e-24 1 No_clan
Cotton_A_27818_CDS 162 208 161 208 PF03791.13 KNOX2 Family 2 48 48 82.8 8.4e-24 1 No_clan
Cotton_A_27818_CDS 296 317 296 317 PF03789.13 ELK Domain 1 22 22 40.9 1.4e-10 1 No_clan
Cotton_A_27818_CDS 336 375 336 375 PF05920.11 Homeobox_KN Family 1 40 40 60.2 1.3e-16 1 CL0123
Cotton_A_24153_CDS 111 369 110 374 PF01040.18 UbiA Family 2 247 252 80.7 1e-22 1 CL0613
Cotton_A_39897_CDS 57 95 56 97 PF04548.16 AIG1 Domain 59 96 212 27.7 1.5e-06 1 CL0023
Cotton_A_01162_CDS 106 165 105 165 PF13812.6 PPR_3 Repeat 4 63 63 37.1 2.5e-09 1 CL0020
Cotton_A_01162_CDS 182 213 181 214 PF12854.7 PPR_1 Repeat 2 33 34 29.6 4e-07 1 CL0020
Cotton_A_01162_CDS 220 267 220 269 PF13041.6 PPR_2 Repeat 1 48 50 48.8 5.9e-13 1 CL0020
Cotton_A_01162_CDS 290 338 290 339 PF13041.6 PPR_2 Repeat 1 49 50 59.1 3.6e-16 1 CL0020
Cotton_A_01162_CDS 363 393 363 393 PF01535.20 PPR Family 1 31 31 22.4 9.4e-05 1 CL0020
Cotton_A_01162_CDS 395 444 395 444 PF13041.6 PPR_2 Repeat 1 50 50 44.1 1.7e-11 1 CL0020
Cotton_A_01162_CDS 462 494 461 494 PF12854.7 PPR_1 Repeat 2 34 34 31.6 9.8e-08 1 CL0020
Cotton_A_01162_CDS 500 549 500 549 PF13041.6 PPR_2 Repeat 1 50 50 72.2 2.9e-20 1 CL0020
Cotton_A_01162_CDS 567 599 566 599 PF12854.7 PPR_1 Repeat 2 34 34 35.0 8.3e-09 1 CL0020
Cotton_A_01162_CDS 715 744 714 744 PF01535.20 PPR Family 2 31 31 17.1 0.0048 1 CL0020
Cotton_A_01162_CDS 747 795 747 795 PF13041.6 PPR_2 Repeat 2 50 50 52.3 4.6e-14 1 CL0020
Cotton_A_01162_CDS 820 849 819 849 PF01535.20 PPR Family 2 31 31 28.2 1.4e-06 1 CL0020
Cotton_A_01162_CDS 854 899 851 900 PF13041.6 PPR_2 Repeat 4 49 50 52.7 3.4e-14 1 CL0020
Cotton_A_01162_CDS 921 965 921 970 PF13041.6 PPR_2 Repeat 1 45 50 58.9 4.1e-16 1 CL0020
Cotton_A_01162_CDS 991 1030 991 1032 PF13041.6 PPR_2 Repeat 1 40 50 34.4 1.8e-08 1 CL0020
Cotton_A_11708_CDS 26 193 25 194 PF05042.13 Caleosin Family 2 169 170 238.6 3.6e-71 1 CL0220
Cotton_A_15571_CDS 128 458 125 458 PF00291.25 PALP Family 4 294 294 166.8 7e-49 1 CL0063
Cotton_A_21513_CDS 170 283 163 285 PF00931.22 NB-ARC Domain 10 128 252 66.9 1.5e-18 1 CL0023
Cotton_A_38873_CDS 40 167 39 167 PF00582.26 Usp Domain 3 141 141 74.2 1.5e-20 1 CL0039
Cotton_A_05690_CDS 327 484 327 486 PF13768.6 VWA_3 Domain 1 152 155 56.1 3.8e-15 1 CL0128
Cotton_A_22473_CDS 5 103 5 103 PF03647.13 Tmemb_14 Family 1 92 92 101.3 3.7e-29 1 No_clan
Cotton_A_03198_CDS 30 115 27 120 PF00153.27 Mito_carr Family 4 90 97 54.7 7.1e-15 1 No_clan
Cotton_A_03198_CDS 128 212 123 214 PF00153.27 Mito_carr Family 6 94 97 64.7 5.5e-18 1 No_clan
Cotton_A_03198_CDS 220 307 218 311 PF00153.27 Mito_carr Family 4 92 97 68.4 3.9e-19 1 No_clan
Cotton_A_40362_CDS 44 283 44 283 PF00141.23 peroxidase Domain 1 229 229 244.3 1.3e-72 1 CL0617
Cotton_A_15902_CDS 153 360 150 360 PF01061.24 ABC2_membrane Family 4 210 210 142.5 1.1e-41 1 CL0181
Cotton_A_36964_CDS 31 269 30 276 PF00139.19 Lectin_legB Domain 2 239 249 243.8 1.9e-72 1 CL0004
Cotton_A_36964_CDS 342 608 341 611 PF00069.25 Pkinase Domain 2 260 264 167.4 3.8e-49 1 CL0016
Cotton_A_23690_CDS 35 56 33 58 PF06200.14 tify Domain 3 25 34 40.2 1.5e-10 1 No_clan
Cotton_A_06149_CDS 56 101 56 101 PF12906.7 RINGv Domain 1 48 48 49.3 3.8e-13 1 CL0229
Cotton_A_06149_CDS 107 224 107 224 PF12428.8 DUF3675 Family 1 119 119 138.4 1.6e-40 1 No_clan
Cotton_A_25841_CDS 5 73 2 74 PF04418.12 DUF543 Domain 8 73 74 88.9 1.6e-25 1 No_clan
Cotton_A_23552_CDS 179 414 179 414 PF03360.16 Glyco_transf_43 Family 1 205 205 182.9 6.5e-54 1 CL0110
Cotton_A_10552_CDS 26 84 21 84 PF02953.15 zf-Tim10_DDP Domain 6 64 64 66.7 1e-18 1 No_clan
Cotton_A_27264_CDS 10 96 6 99 PF00153.27 Mito_carr Family 5 94 97 40.0 2.8e-10 1 No_clan
Cotton_A_27264_CDS 107 162 103 171 PF00153.27 Mito_carr Family 6 56 97 25.9 7e-06 1 No_clan
Cotton_A_31409_CDS 59 432 36 448 PF13520.6 AA_permease_2 Family 24 412 425 117.1 8.4e-34 1 CL0062
Cotton_A_07648_CDS 10 76 9 80 PF16363.5 GDP_Man_Dehyd Domain 2 72 332 30.0 3.3e-07 1 CL0063
Cotton_A_31127_CDS 95 194 94 195 PF03168.13 LEA_2 Domain 2 100 101 45.7 7.3e-12 1 CL0159
Cotton_A_10467_CDS 175 462 175 462 PF06814.13 Lung_7-TM_R Family 1 295 295 339.3 1.7e-101 1 CL0192
Cotton_A_23740_CDS 18 341 17 341 PF03405.14 FA_desaturase_2 Domain 2 326 326 485.1 7.6e-146 1 CL0044
Cotton_A_01978_CDS 321 590 318 592 PF00069.25 Pkinase Domain 5 260 264 103.5 1.2e-29 1 CL0016
Cotton_A_29906_CDS 146 284 145 287 PF10607.9 CLTH Domain 2 145 148 120.4 5.5e-35 1 No_clan
Cotton_A_29906_CDS 324 365 324 365 PF13445.6 zf-RING_UBOX Domain 1 39 39 37.5 1.8e-09 1 CL0229
Cotton_A_06115_CDS 65 530 64 530 PF11744.8 ALMT Family 2 469 469 596.8 2.9e-179 1 CL0307
Cotton_A_37617_CDS 22 82 22 89 PF05495.12 zf-CHY Domain 1 57 75 41.3 1.7e-10 1 No_clan
Cotton_A_37617_CDS 182 225 181 226 PF13639.6 zf-RING_2 Domain 2 43 44 32.0 1.2e-07 1 CL0229
Cotton_A_37617_CDS 230 287 230 287 PF14599.6 zinc_ribbon_6 Domain 1 59 59 88.2 2.5e-25 1 No_clan
Cotton_A_11449_CDS 31 318 27 318 PF03151.16 TPT Family 5 290 290 81.1 8.3e-23 1 CL0184
Cotton_A_01296_CDS 44 319 17 330 PF00225.23 Kinesin Domain 25 320 333 214.3 2.1e-63 1 CL0023
Cotton_A_01296_CDS 700 748 699 754 PF12836.7 HHH_3 Domain 8 56 65 34.3 2e-08 1 CL0198
Cotton_A_21638_CDS 115 284 114 284 PF14299.6 PP2 Family 2 146 146 132.7 9.5e-39 1 No_clan
Cotton_A_28762_CDS 36 132 34 134 PF03171.20 2OG-FeII_Oxy Domain 4 99 101 88.0 4.9e-25 1 CL0029
Cotton_A_25537_CDS 82 159 82 159 PF02881.19 SRP54_N Domain 1 75 75 64.3 9e-18 1 No_clan
Cotton_A_25537_CDS 177 372 177 372 PF00448.22 SRP54 Domain 1 196 196 257.7 6.2e-77 1 CL0023
Cotton_A_25537_CDS 403 501 403 503 PF02978.19 SRP_SPB Domain 1 97 99 88.7 3.1e-25 1 CL0123
Cotton_A_32176_CDS 139 239 136 249 PF00891.18 Methyltransf_2 Domain 4 104 210 71.5 5.9e-20 1 CL0063
Cotton_A_24873_CDS 7 142 1 142 PF01397.21 Terpene_synth Domain 49 192 192 152.3 1.2e-44 1 No_clan
Cotton_A_24873_CDS 143 394 138 394 PF03936.16 Terpene_synth_C Domain 15 267 267 333.2 1e-99 1 CL0613
Cotton_A_21315_CDS 147 194 145 194 PF00010.26 HLH Domain 4 53 53 34.5 1.5e-08 1 No_clan
Cotton_A_11880_CDS 69 88 68 88 PF00612.27 IQ Motif 2 21 21 23.1 3.9e-05 1 CL0220
Cotton_A_11880_CDS 310 372 289 413 PF13178.6 DUF4005 Family 6 53 93 23.9 4.8e-05 1 No_clan
Cotton_A_15050_CDS 5 82 5 82 PF07189.11 SF3b10 Family 1 78 78 126.8 2.6e-37 1 No_clan
Cotton_A_23261_CDS 154 593 154 593 PF12899.7 Glyco_hydro_100 Domain 1 435 435 691.3 4.5e-208 1 CL0059
Cotton_A_03625_CDS 144 424 136 451 PF07899.11 Frigida Family 10 286 289 248.0 1.1e-73 1 No_clan
Cotton_A_38256_CDS 7 338 2 338 PF16113.5 ECH_2 Domain 20 334 334 357.2 1e-106 1 CL0127
Cotton_A_31350_CDS 57 289 45 299 PF00067.22 p450 Domain 209 439 463 159.0 1.6e-46 1 No_clan
Cotton_A_20802_CDS 36 130 35 131 PF01657.17 Stress-antifung Family 2 94 95 84.4 6.3e-24 1 No_clan
Cotton_A_20802_CDS 149 245 146 246 PF01657.17 Stress-antifung Family 6 94 95 40.8 2.5e-10 1 No_clan
Cotton_A_00688_CDS 410 464 407 469 PF00170.21 bZIP_1 Family 5 59 64 35.3 9e-09 1 CL0018
Cotton_A_08923_CDS 106 199 105 201 PF09810.9 Exo5 Family 2 98 368 91.5 7.2e-26 1 CL0236
Cotton_A_08923_CDS 269 337 250 338 PF09810.9 Exo5 Family 298 366 368 52.6 5e-14 1 CL0236
Cotton_A_11263_CDS 166 385 143 392 PF00201.18 UDPGT Family 208 419 499 92.9 2e-26 1 CL0113
Cotton_A_06977_CDS 32 151 31 155 PF01417.20 ENTH Domain 2 121 125 88.7 2.9e-25 1 CL0009
Cotton_A_07539_CDS 27 116 27 116 PF00447.17 HSF_DNA-bind Domain 1 96 96 106.7 7.2e-31 1 CL0123
Cotton_A_25344_CDS 49 87 48 88 PF08263.12 LRRNT_2 Family 2 40 41 41.5 1.2e-10 1 No_clan
Cotton_A_25344_CDS 720 945 718 1025 PF00069.25 Pkinase Domain 3 205 264 137.9 4e-40 1 CL0016
Cotton_A_33566_CDS 147 562 146 563 PF00654.20 Voltage_CLC Family 2 353 354 297.6 1.4e-88 1 No_clan
Cotton_A_33566_CDS 716 767 709 769 PF00571.28 CBS Domain 6 53 57 19.4 0.0011 1 No_clan
Cotton_A_27630_CDS 25 136 24 154 PF12146.8 Hydrolase_4 Family 2 114 239 56.4 2.6e-15 1 CL0028
Cotton_A_26009_CDS 82 260 81 273 PF04751.14 DUF615 Family 2 142 154 127.7 3.6e-37 1 No_clan
Cotton_A_26009_CDS 317 392 317 399 PF00314.17 Thaumatin Domain 1 73 214 81.2 8.1e-23 1 CL0293
Cotton_A_37646_CDS 21 68 21 70 PF13041.6 PPR_2 Repeat 1 47 50 34.0 2.4e-08 1 CL0020
Cotton_A_37646_CDS 123 171 123 172 PF13041.6 PPR_2 Repeat 1 49 50 38.7 8.4e-10 1 CL0020
Cotton_A_37646_CDS 199 223 199 226 PF01535.20 PPR Family 4 28 31 16.1 0.0095 1 CL0020
Cotton_A_37646_CDS 227 254 227 257 PF01535.20 PPR Family 1 28 31 22.2 0.00011 1 CL0020
Cotton_A_37646_CDS 301 327 301 328 PF01535.20 PPR Family 4 30 31 9.4 1.4 1 CL0020
Cotton_A_37646_CDS 330 358 329 359 PF01535.20 PPR Family 2 30 31 14.3 0.037 1 CL0020
Cotton_A_37646_CDS 401 422 399 424 PF01535.20 PPR Family 3 24 31 14.1 0.042 1 CL0020
Cotton_A_37646_CDS 427 475 427 476 PF13041.6 PPR_2 Repeat 1 49 50 34.7 1.5e-08 1 CL0020
Cotton_A_37646_CDS 501 523 500 525 PF01535.20 PPR Family 2 24 31 16.5 0.007 1 CL0020
Cotton_A_33601_CDS 54 108 32 113 PF01425.21 Amidase Family 57 110 451 38.9 5.2e-10 1 No_clan
Cotton_A_40921_CDS 15 133 14 135 PF12070.8 SCAI Family 2 122 535 183.6 7.1e-54 1 No_clan
Cotton_A_27047_CDS 159 372 155 401 PF12146.8 Hydrolase_4 Family 5 209 239 46.9 2.1e-12 1 CL0028
Cotton_A_16870_CDS 58 165 55 167 PF13962.6 PGG Domain 4 114 116 78.4 3.6e-22 1 No_clan
Cotton_A_27709_CDS 28 123 23 126 PF13962.6 PGG Domain 7 107 116 88.1 3.5e-25 1 No_clan
Cotton_A_17358_CDS 122 169 118 169 PF08729.10 HUN Domain 5 52 52 46.4 2.9e-12 1 No_clan
Cotton_A_31874_CDS 1 231 1 231 PF16363.5 GDP_Man_Dehyd Domain 80 332 332 168.2 3e-49 1 CL0063
Cotton_A_14704_CDS 6 114 6 114 PF13881.6 Rad60-SLD_2 Domain 1 111 111 141.7 8.9e-42 1 CL0072
Cotton_A_06278_CDS 21 221 19 222 PF00596.21 Aldolase_II Domain 3 185 186 138.0 3.4e-40 1 No_clan
Cotton_A_06278_CDS 272 484 271 484 PF00702.26 Hydrolase Domain 2 210 210 27.0 4.9e-06 1 CL0137
Cotton_A_00532_CDS 7 322 6 322 PF07992.14 Pyr_redox_2 Domain 2 294 294 191.9 1.4e-56 1 CL0063
Cotton_A_05256_CDS 181 398 181 398 PF13532.6 2OG-FeII_Oxy_2 Domain 1 196 196 148.6 2.5e-43 1 CL0029
Cotton_A_01514_CDS 298 351 297 351 PF03478.18 DUF295 Domain 2 55 55 35.8 4.3e-09 1 No_clan
Cotton_A_19551_CDS 32 233 32 234 PF01734.22 Patatin Family 1 203 204 74.1 1.7e-20 1 CL0323
Cotton_A_03420_CDS 48 239 47 242 PF00149.28 Metallophos Domain 2 201 204 126.6 1.7e-36 1 CL0163
Cotton_A_22415_CDS 110 268 109 269 PF08389.12 Xpo1 Family 2 148 149 91.7 4.6e-26 1 CL0020
Cotton_A_26117_CDS 1 51 1 51 PF00082.22 Peptidase_S8 Domain 249 298 298 30.3 2.5e-07 1 No_clan
Cotton_A_26117_CDS 124 180 114 180 PF17766.1 fn3_6 Domain 43 99 99 45.7 5.7e-12 1 CL0159
Cotton_A_03485_CDS 54 70 52 71 PF14383.6 VARLMGL Domain 14 30 32 30.3 2.2e-07 1 No_clan
Cotton_A_40994_CDS 154 208 152 217 PF14559.6 TPR_19 Domain 3 57 68 30.4 4e-07 1 CL0020
Cotton_A_14578_CDS 21 287 20 287 PF00069.25 Pkinase Domain 2 264 264 234.5 1.3e-69 1 CL0016
Cotton_A_03282_CDS 3 297 1 297 PF02535.22 Zip Family 7 333 333 239.0 8e-71 1 CL0184
Cotton_A_16320_CDS 66 194 65 200 PF00582.26 Usp Domain 2 135 141 42.7 7.3e-11 1 CL0039
Cotton_A_31906_CDS 248 338 197 372 PF03141.16 Methyltransf_29 Family 374 464 506 22.1 4.8e-05 1 CL0063
Cotton_A_14465_CDS 24 319 23 322 PF01406.19 tRNA-synt_1e Family 2 298 301 417.5 3.1e-125 1 CL0039
Cotton_A_32651_CDS 294 337 292 340 PF13920.6 zf-C3HC4_3 Domain 3 47 50 36.9 2.3e-09 1 CL0229
Cotton_A_29958_CDS 17 318 17 318 PF07993.12 NAD_binding_4 Family 1 257 257 257.1 1.4e-76 1 CL0063
Cotton_A_29958_CDS 395 493 394 493 PF03015.19 Sterile Family 2 92 93 65.7 3.3e-18 1 No_clan
Cotton_A_16073_CDS 63 112 62 113 PF00847.20 AP2 Domain 2 53 54 46.2 3.9e-12 1 CL0081
Cotton_A_28394_CDS 5 85 5 113 PF18052.1 Rx_N Domain 1 81 93 67.3 1.1e-18 1 No_clan
Cotton_A_28394_CDS 164 410 163 410 PF00931.22 NB-ARC Domain 2 252 252 235.9 3.9e-70 1 CL0023
Cotton_A_26563_CDS 278 571 278 572 PF01501.20 Glyco_transf_8 Family 1 255 256 241.9 7.7e-72 1 CL0110
Cotton_A_22186_CDS 4 26 4 26 PF10584.9 Proteasome_A_N Domain 1 23 23 51.2 6.8e-14 1 CL0052
Cotton_A_22186_CDS 27 210 27 210 PF00227.26 Proteasome Domain 1 190 190 199.9 2.6e-59 1 CL0052
Cotton_A_09283_CDS 106 415 92 416 PF12819.7 Malectin_like Domain 60 335 336 111.3 5.5e-32 1 CL0202
Cotton_A_09283_CDS 513 782 509 786 PF07714.17 Pkinase_Tyr Domain 7 255 259 159.1 1.2e-46 1 CL0016
Cotton_A_24551_CDS 4 188 1 188 PF00069.25 Pkinase Domain 74 264 264 135.7 1.8e-39 1 CL0016
Cotton_A_16867_CDS 93 271 93 271 PF06026.14 Rib_5-P_isom_A Family 1 173 173 203.3 2e-60 1 CL0246
Cotton_A_18621_CDS 136 318 126 318 PF00544.19 Pec_lyase_C Domain 31 211 211 67.1 1.6e-18 1 CL0268
Cotton_A_33512_CDS 39 198 39 207 PF00067.22 p450 Domain 1 162 463 85.0 4.4e-24 1 No_clan
Cotton_A_33512_CDS 207 455 204 469 PF00067.22 p450 Domain 202 450 463 256.4 4.8e-76 1 No_clan
Cotton_A_26441_CDS 91 344 91 346 PF01501.20 Glyco_transf_8 Family 1 254 256 191.1 2.4e-56 1 CL0110
Cotton_A_28911_CDS 47 316 47 319 PF00069.25 Pkinase Domain 1 260 264 158.9 1.5e-46 1 CL0016
Cotton_A_20713_CDS 8 73 7 73 PF00226.31 DnaJ Domain 2 63 63 88.2 2.9e-25 1 CL0392
Cotton_A_17393_CDS 46 291 45 292 PF00141.23 peroxidase Domain 2 228 229 250.1 2.1e-74 1 CL0617
Cotton_A_33945_CDS 15 149 14 157 PF00892.20 EamA Family 2 135 137 60.5 1.9e-16 1 CL0184
Cotton_A_33945_CDS 191 329 190 330 PF00892.20 EamA Family 2 136 137 60.7 1.6e-16 1 CL0184
Cotton_A_01879_CDS 29 110 28 113 PF03871.14 RNA_pol_Rpb5_N Domain 2 86 89 69.2 3.5e-19 1 CL0236
Cotton_A_01879_CDS 155 227 155 227 PF01191.19 RNA_pol_Rpb5_C Domain 1 73 73 97.4 3.2e-28 1 No_clan
Cotton_A_14934_CDS 15 266 14 275 PF00294.24 PfkB Family 5 243 302 78.6 4.8e-22 1 CL0118
Cotton_A_14934_CDS 310 360 308 368 PF00294.24 PfkB Family 241 292 302 30.8 1.7e-07 1 CL0118
Cotton_A_01457_CDS 460 836 451 837 PF00503.20 G-alpha Domain 23 353 354 202.3 1.2e-59 1 CL0023
Cotton_A_28759_CDS 86 193 86 218 PF13625.6 Helicase_C_3 Domain 1 107 127 108.8 1.9e-31 1 No_clan
Cotton_A_28759_CDS 308 464 306 466 PF04851.15 ResIII Family 3 169 171 53.3 3.3e-14 1 CL0023
Cotton_A_28759_CDS 490 738 490 748 PF16203.5 ERCC3_RAD25_C Domain 1 241 247 376.4 4.8e-113 1 CL0023
Cotton_A_02240_CDS 10 57 10 57 PF00249.31 Myb_DNA-binding Domain 1 46 46 59.3 3e-16 1 CL0123
Cotton_A_09653_CDS 323 345 318 346 PF14383.6 VARLMGL Domain 8 30 32 21.3 0.00014 1 No_clan
Cotton_A_09653_CDS 875 1043 875 1043 PF14309.6 DUF4378 Family 1 165 165 142.4 1.6e-41 1 No_clan
Cotton_A_19450_CDS 36 309 36 339 PF00664.23 ABC_membrane Family 1 271 274 158.2 3.3e-46 1 CL0241
Cotton_A_19450_CDS 379 528 379 528 PF00005.27 ABC_tran Domain 1 137 137 113.4 1.1e-32 1 CL0023
Cotton_A_19450_CDS 687 955 685 958 PF00664.23 ABC_membrane Family 3 270 274 175.1 2.3e-51 1 CL0241
Cotton_A_19450_CDS 1027 1176 1026 1176 PF00005.27 ABC_tran Domain 2 137 137 119.3 1.7e-34 1 CL0023
Cotton_A_34909_CDS 99 390 99 401 PF03552.14 Cellulose_synt Family 1 296 722 290.4 3.2e-86 1 CL0110
Cotton_A_34909_CDS 404 727 392 730 PF03552.14 Cellulose_synt Family 388 703 722 158.9 2e-46 1 CL0110
Cotton_A_33214_CDS 105 213 103 213 PF10184.9 DUF2358 Family 3 113 113 43.3 3.8e-11 1 CL0051
Cotton_A_09572_CDS 63 87 55 87 PF00400.32 WD40 Repeat 13 38 38 13.7 0.087 1 CL0186
Cotton_A_09572_CDS 97 131 94 131 PF00400.32 WD40 Repeat 5 38 38 16.2 0.014 1 CL0186
Cotton_A_09572_CDS 469 618 467 618 PF00160.21 Pro_isomerase Domain 3 158 158 186.6 3.6e-55 1 CL0475
Cotton_A_28746_CDS 206 234 205 236 PF02184.16 HAT Repeat 2 30 32 49.5 2.9e-13 1 CL0020
Cotton_A_24029_CDS 32 51 30 55 PF05678.14 VQ Motif 4 23 28 28.3 9.1e-07 1 No_clan
Cotton_A_12235_CDS 207 250 202 250 PF00010.26 HLH Domain 7 53 53 32.9 4.6e-08 1 No_clan
Cotton_A_01242_CDS 2 253 1 255 PF02458.15 Transferase Family 182 432 434 148.3 2.5e-43 1 CL0149
Cotton_A_37867_CDS 65 87 64 88 PF12171.8 zf-C2H2_jaz Family 2 24 27 24.2 2.9e-05 1 CL0361
Cotton_A_24559_CDS 24 70 24 71 PF01479.25 S4 Domain 1 47 48 32.6 4.9e-08 1 CL0492
Cotton_A_24994_CDS 10 127 2 135 PF00201.18 UDPGT Family 275 385 499 96.8 1.3e-27 1 CL0113
Cotton_A_03835_CDS 2 123 2 124 PF04749.17 PLAC8 Family 1 98 99 60.2 3e-16 1 No_clan
Cotton_A_09184_CDS 25 100 25 100 PF14829.6 GPAT_N Domain 1 76 76 121.7 9e-36 1 No_clan
Cotton_A_09184_CDS 142 288 138 296 PF01553.21 Acyltransferase Family 5 126 135 56.7 1.8e-15 1 CL0228
Cotton_A_28231_CDS 58 323 58 323 PF16499.5 Melibiase_2 Family 1 284 284 260.5 1.6e-77 1 CL0058
Cotton_A_12270_CDS 5 96 4 117 PF14226.6 DIOX_N Family 2 100 118 53.4 3.9e-14 1 CL0029
Cotton_A_12270_CDS 159 253 154 253 PF03171.20 2OG-FeII_Oxy Domain 6 101 101 101.9 2.3e-29 1 CL0029
Cotton_A_03203_CDS 8 293 1 294 PF00083.24 Sugar_tr Family 157 450 452 187.0 5.8e-55 1 CL0015
Cotton_A_13567_CDS 134 160 133 162 PF01535.20 PPR Family 3 29 31 12.9 0.1 1 CL0020
Cotton_A_13567_CDS 164 193 163 193 PF01535.20 PPR Family 2 31 31 15.3 0.018 1 CL0020
Cotton_A_13567_CDS 264 294 264 294 PF01535.20 PPR Family 1 31 31 23.4 4.6e-05 1 CL0020
Cotton_A_13567_CDS 337 362 334 364 PF01535.20 PPR Family 4 29 31 19.5 0.00083 1 CL0020
Cotton_A_13567_CDS 365 391 365 395 PF01535.20 PPR Family 1 27 31 20.7 0.00033 1 CL0020
Cotton_A_13567_CDS 439 464 436 466 PF01535.20 PPR Family 4 29 31 11.0 0.41 1 CL0020
Cotton_A_13567_CDS 467 490 467 494 PF01535.20 PPR Family 1 24 31 27.9 1.7e-06 1 CL0020
Cotton_A_13567_CDS 567 614 566 616 PF13041.6 PPR_2 Repeat 2 48 50 31.0 2.2e-07 1 CL0020
Cotton_A_13567_CDS 643 663 643 670 PF01535.20 PPR Family 4 24 31 10.6 0.54 1 CL0020
Cotton_A_13567_CDS 672 694 671 697 PF01535.20 PPR Family 2 24 31 19.3 0.00092 1 CL0020
Cotton_A_13567_CDS 767 814 766 815 PF13041.6 PPR_2 Repeat 2 49 50 38.3 1.1e-09 1 CL0020
Cotton_A_02855_CDS 58 117 57 123 PF00076.22 RRM_1 Domain 2 64 70 34.7 1.1e-08 1 CL0221
Cotton_A_05019_CDS 13 266 12 266 PF00069.25 Pkinase Domain 2 264 264 248.3 8.1e-74 1 CL0016
Cotton_A_05019_CDS 329 387 329 388 PF03822.14 NAF Domain 1 53 54 74.6 5.1e-21 1 CL0573
Cotton_A_18795_CDS 239 463 231 483 PF00481.21 PP2C Family 41 236 258 115.2 3.9e-33 1 CL0238
Cotton_A_06153_CDS 172 362 172 363 PF00337.22 Gal-bind_lectin Domain 1 133 134 130.5 2.7e-38 1 CL0004
Cotton_A_06153_CDS 406 590 406 595 PF01762.21 Galactosyl_T Family 1 188 195 137.0 6.8e-40 1 CL0110
Cotton_A_02468_CDS 602 698 600 710 PF12043.8 DUF3527 Family 3 96 351 32.4 7.1e-08 1 CL0395
Cotton_A_02468_CDS 705 879 694 881 PF12043.8 DUF3527 Family 167 349 351 132.3 3.1e-38 1 CL0395
Cotton_A_16613_CDS 8 35 7 35 PF13181.6 TPR_8 Repeat 7 34 34 12.3 0.15 1 CL0020
Cotton_A_16613_CDS 71 103 70 103 PF00515.28 TPR_1 Repeat 2 34 34 32.2 6.1e-08 1 CL0020
Cotton_A_16613_CDS 139 193 139 193 PF17830.1 STI1 Domain 1 55 55 75.9 1.7e-21 1 No_clan
Cotton_A_16613_CDS 398 439 398 439 PF13414.6 TPR_11 Repeat 1 42 42 34.1 1.6e-08 1 CL0020
Cotton_A_16613_CDS 460 492 459 492 PF00515.28 TPR_1 Repeat 2 34 34 31.2 1.2e-07 1 CL0020
Cotton_A_16613_CDS 521 572 520 573 PF17830.1 STI1 Domain 3 54 55 55.0 5.5e-15 1 No_clan
Cotton_A_00897_CDS 57 211 56 212 PF00504.21 Chloroa_b-bind Family 2 160 161 160.8 3.9e-47 1 No_clan
Cotton_A_12065_CDS 23 288 22 290 PF00248.21 Aldo_ket_red Domain 2 292 294 168.1 2.5e-49 1 No_clan
Cotton_A_12009_CDS 21 184 19 223 PF00069.25 Pkinase Domain 3 157 264 90.4 1.2e-25 1 CL0016
Cotton_A_12009_CDS 237 342 230 342 PF00069.25 Pkinase Domain 149 264 264 70.3 1.6e-19 1 CL0016
Cotton_A_17975_CDS 133 335 69 345 PF00481.21 PP2C Family 70 243 258 128.0 4.6e-37 1 CL0238
Cotton_A_25842_CDS 5 67 2 68 PF04418.12 DUF543 Domain 8 73 74 71.8 3.4e-20 1 No_clan
Cotton_A_31748_CDS 181 453 167 454 PF00497.20 SBP_bac_3 Domain 55 224 225 44.0 1.7e-11 1 CL0177
Cotton_A_31748_CDS 238 481 235 485 PF00060.26 Lig_chan Family 4 143 149 60.9 1.2e-16 1 CL0030
Cotton_A_00783_CDS 2 55 2 55 PF08766.11 DEK_C Domain 1 54 54 68.1 4.7e-19 1 No_clan
Cotton_A_00783_CDS 119 189 117 189 PF02201.18 SWIB Domain 3 74 74 105.1 1.3e-30 1 No_clan
Cotton_A_00783_CDS 289 361 289 361 PF02201.18 SWIB Domain 1 74 74 102.6 7.8e-30 1 No_clan
Cotton_A_00783_CDS 408 481 407 481 PF02201.18 SWIB Domain 2 74 74 90.4 5.1e-26 1 No_clan
Cotton_A_38730_CDS 82 322 81 323 PF00931.22 NB-ARC Domain 2 251 252 181.4 1.7e-53 1 CL0023
Cotton_A_27022_CDS 152 246 151 274 PF01926.23 MMR_HSR1 Family 2 90 114 54.1 1.5e-14 1 CL0023
Cotton_A_27022_CDS 436 509 436 510 PF07650.17 KH_2 Domain 1 74 78 34.7 1.2e-08 1 CL0007
Cotton_A_10529_CDS 9 61 9 61 PF14570.6 zf-RING_4 Domain 1 48 48 72.8 1.4e-20 1 CL0229
Cotton_A_10529_CDS 112 190 112 190 PF00076.22 RRM_1 Domain 1 70 70 21.5 0.00015 1 CL0221
Cotton_A_31389_CDS 297 392 286 427 PF05175.14 MTS Domain 23 110 169 23.3 3.8e-05 1 CL0063
Cotton_A_31796_CDS 337 470 337 472 PF03468.14 XS Domain 1 111 113 93.3 1.1e-26 1 CL0221
Cotton_A_25270_CDS 44 186 44 188 PF02018.17 CBM_4_9 Domain 1 136 138 72.9 3e-20 1 CL0202
Cotton_A_25270_CDS 216 354 216 357 PF02018.17 CBM_4_9 Domain 1 136 138 69.6 3.2e-19 1 CL0202
Cotton_A_25270_CDS 387 529 387 532 PF02018.17 CBM_4_9 Domain 1 133 138 72.1 5.4e-20 1 CL0202
Cotton_A_25270_CDS 588 845 584 849 PF00331.20 Glyco_hydro_10 Family 6 280 316 152.3 1.6e-44 1 CL0058
Cotton_A_31877_CDS 247 413 199 431 PF00201.18 UDPGT Family 258 413 499 98.4 4.2e-28 1 CL0113
Cotton_A_02245_CDS 4 123 1 124 PF00125.24 Histone Domain 4 130 131 84.4 8.6e-24 1 CL0012
Cotton_A_08941_CDS 190 417 190 417 PF03000.14 NPH3 Family 1 258 258 202.5 8.9e-60 1 No_clan
Cotton_A_03031_CDS 7 92 7 122 PF14226.6 DIOX_N Family 1 76 118 52.7 6.6e-14 1 CL0029
Cotton_A_03031_CDS 176 266 169 269 PF03171.20 2OG-FeII_Oxy Domain 7 98 101 63.4 2.2e-17 1 CL0029
Cotton_A_29279_CDS 150 385 147 387 PF00931.22 NB-ARC Domain 4 250 252 182.3 8.9e-54 1 CL0023
Cotton_A_29279_CDS 527 580 525 582 PF13855.6 LRR_8 Repeat 3 57 61 35.1 8.1e-09 1 CL0022
Cotton_A_35173_CDS 67 128 67 128 PF00226.31 DnaJ Domain 1 63 63 66.8 1.4e-18 1 CL0392
Cotton_A_35173_CDS 454 660 451 660 PF11926.8 DUF3444 Family 4 212 212 256.7 1.6e-76 1 No_clan
Cotton_A_35173_CDS 723 926 721 927 PF11926.8 DUF3444 Family 3 211 212 217.3 1.7e-64 1 No_clan
Cotton_A_20172_CDS 87 148 86 149 PF00170.21 bZIP_1 Family 2 63 64 52.5 3.8e-14 1 CL0018
Cotton_A_31976_CDS 44 207 44 207 PF04833.15 COBRA Family 1 165 165 214.7 7e-64 1 No_clan
Cotton_A_17757_CDS 28 64 26 64 PF08263.12 LRRNT_2 Family 3 41 41 29.5 7e-07 1 No_clan
Cotton_A_17757_CDS 84 129 83 129 PF13855.6 LRR_8 Repeat 16 61 61 31.5 1.1e-07 1 CL0022
Cotton_A_17757_CDS 163 179 162 180 PF13516.6 LRR_6 Repeat 2 18 24 12.5 0.12 1 CL0022
Cotton_A_17757_CDS 187 208 187 216 PF00560.33 LRR_1 Repeat 1 22 23 15.8 0.014 1 CL0022
Cotton_A_17757_CDS 329 591 326 593 PF07714.17 Pkinase_Tyr Domain 5 257 259 123.0 1.3e-35 1 CL0016
Cotton_A_10404_CDS 19 167 10 169 PF00071.22 Ras Domain 19 160 162 151.1 2e-44 1 CL0023
Cotton_A_11318_CDS 4 67 4 67 PF00226.31 DnaJ Domain 1 63 63 95.2 1.8e-27 1 CL0392
Cotton_A_11318_CDS 165 323 165 323 PF01556.18 DnaJ_C Domain 1 148 148 147.2 3.5e-43 1 No_clan
Cotton_A_26272_CDS 41 243 41 243 PF04520.13 Senescence_reg Family 1 168 168 148.5 3.3e-43 1 No_clan
Cotton_A_21329_CDS 55 285 55 285 PF00856.28 SET Family 1 169 169 49.4 6.5e-13 1 No_clan
Cotton_A_21329_CDS 333 403 292 471 PF09273.11 Rubis-subs-bind Domain 30 107 129 27.1 5.5e-06 1 No_clan
Cotton_A_23571_CDS 20 257 20 259 PF12697.7 Abhydrolase_6 Domain 1 218 220 50.3 4.6e-13 1 CL0028
Cotton_A_03935_CDS 77 154 77 155 PF10252.9 PP28 Domain 1 84 85 95.3 2.2e-27 1 No_clan
Cotton_A_01126_CDS 52 167 49 167 PF00188.26 CAP Domain 4 126 126 75.7 5.4e-21 1 CL0659
Cotton_A_23157_CDS 9 145 9 146 PF00179.26 UQ_con Domain 1 139 140 165.4 5.6e-49 1 CL0208
Cotton_A_02199_CDS 61 134 61 136 PF03101.15 FAR1 Domain 1 88 90 48.1 1.4e-12 1 CL0274
Cotton_A_02199_CDS 274 365 273 367 PF10551.9 MULE Domain 2 94 96 80.9 6.9e-23 1 CL0219
Cotton_A_02199_CDS 560 586 540 588 PF04434.17 SWIM Domain 12 38 40 38.5 6.3e-10 1 No_clan
Cotton_A_02199_CDS 750 816 750 819 PF07258.14 COMM_domain Domain 1 69 72 22.5 9.2e-05 1 No_clan
Cotton_A_02199_CDS 813 866 811 868 PF07258.14 COMM_domain Domain 19 70 72 25.7 9.3e-06 1 No_clan
Cotton_A_39494_CDS 1008 1168 1008 1183 PF08623.10 TIP120 Family 1 164 168 191.3 1e-56 1 CL0020
Cotton_A_29283_CDS 132 187 130 188 PF13855.6 LRR_8 Repeat 3 59 61 40.6 1.5e-10 1 CL0022
Cotton_A_18653_CDS 2 156 1 157 PF00248.21 Aldo_ket_red Domain 108 243 294 45.9 4e-12 1 No_clan
Cotton_A_04671_CDS 84 218 84 222 PF14476.6 Chloroplast_duf Family 1 135 320 204.9 1.5e-60 1 No_clan
Cotton_A_00213_CDS 29 189 28 189 PF04833.15 COBRA Family 3 165 165 200.9 1.2e-59 1 No_clan
Cotton_A_03392_CDS 121 279 120 279 PF14299.6 PP2 Family 2 146 146 128.3 2.2e-37 1 No_clan
Cotton_A_22365_CDS 788 1245 788 1245 PF12054.8 DUF3535 Family 1 435 435 348.5 7e-104 1 No_clan
Cotton_A_22365_CDS 1475 1772 1454 1773 PF00176.23 SNF2_N Family 55 349 350 205.7 7.9e-61 1 CL0023
Cotton_A_22365_CDS 1834 1936 1827 1936 PF00271.31 Helicase_C Family 14 111 111 53.2 3.3e-14 1 CL0023
Cotton_A_06970_CDS 150 290 149 292 PF01694.22 Rhomboid Family 2 148 150 134.9 2.2e-39 1 CL0207
Cotton_A_13881_CDS 33 217 28 218 PF00687.21 Ribosomal_L1 Domain 3 203 204 134.5 3.9e-39 1 No_clan
Cotton_A_19802_CDS 6 28 6 33 PF13202.6 EF-hand_5 Domain 1 23 25 28.5 7e-07 1 CL0220
Cotton_A_19802_CDS 66 129 65 130 PF13499.6 EF-hand_7 Domain 2 70 71 40.3 3.3e-10 1 CL0220
Cotton_A_04334_CDS 192 210 191 211 PF00612.27 IQ Motif 2 20 21 19.0 0.00079 1 CL0220
Cotton_A_16192_CDS 7 278 6 279 PF14938.6 SNAP Domain 2 281 282 380.2 6.3e-114 1 CL0020
Cotton_A_02850_CDS 39 313 38 314 PF04674.12 Phi_1 Family 2 275 276 289.0 3.3e-86 1 No_clan
Cotton_A_03840_CDS 28 87 27 91 PF08240.12 ADH_N Domain 2 61 109 34.2 1.8e-08 1 CL0296
Cotton_A_03840_CDS 151 266 151 279 PF00107.26 ADH_zinc_N Family 1 116 130 113.3 7.3e-33 1 CL0063
Cotton_A_33720_CDS 2 121 2 122 PF10644.9 Misat_Tub_SegII Domain 1 117 118 115.1 2.1e-33 1 CL0566
Cotton_A_33720_CDS 155 336 150 337 PF14881.6 Tubulin_3 Domain 7 180 181 91.5 5e-26 1 CL0566
Cotton_A_03081_CDS 39 495 39 500 PF00067.22 p450 Domain 1 457 463 357.6 9.4e-107 1 No_clan
Cotton_A_01121_CDS 5 333 4 333 PF12767.7 SAGA-Tad1 Family 2 235 235 222.8 5e-66 1 No_clan
Cotton_A_03697_CDS 15 51 14 60 PF07647.17 SAM_2 Domain 4 41 66 35.1 1.1e-08 1 CL0003
Cotton_A_04630_CDS 178 548 178 548 PF03514.14 GRAS Family 1 374 374 406.7 8.7e-122 1 CL0063
Cotton_A_00301_CDS 40 176 35 195 PF05097.12 DUF688 Family 62 184 446 62.0 5.7e-17 1 No_clan
Cotton_A_08857_CDS 3 494 2 502 PF00743.19 FMO-like Family 2 447 532 152.5 1.4e-44 1 CL0063
Cotton_A_13378_CDS 85 154 85 154 PF01287.20 eIF-5a Domain 1 69 69 103.8 3.9e-30 1 CL0021
Cotton_A_26910_CDS 6 165 5 187 PF05562.11 WCOR413 Family 2 162 183 239.4 2.5e-71 1 No_clan
Cotton_A_04396_CDS 161 377 159 402 PF00931.22 NB-ARC Domain 3 222 252 98.2 4.3e-28 1 CL0023
Cotton_A_04396_CDS 532 588 530 589 PF13855.6 LRR_8 Repeat 3 60 61 28.4 1e-06 1 CL0022
Cotton_A_05625_CDS 136 241 136 241 PF03168.13 LEA_2 Domain 1 101 101 37.9 2e-09 1 CL0159
Cotton_A_11343_CDS 6 526 5 527 PF05091.12 eIF-3_zeta Family 2 516 520 641.6 1.2e-192 1 CL0236
Cotton_A_24058_CDS 203 290 203 316 PF02338.19 OTU Family 1 93 127 44.6 1.8e-11 1 CL0125
Cotton_A_07939_CDS 159 240 157 240 PF00288.26 GHMP_kinases_N Family 3 66 66 65.6 3.4e-18 1 CL0329
Cotton_A_07939_CDS 390 459 380 462 PF08544.13 GHMP_kinases_C Family 10 82 85 29.6 6.9e-07 1 CL0677
Cotton_A_29987_CDS 17 64 17 64 PF00249.31 Myb_DNA-binding Domain 1 46 46 57.9 8.3e-16 1 CL0123
Cotton_A_29987_CDS 71 113 70 115 PF00249.31 Myb_DNA-binding Domain 2 44 46 52.6 3.7e-14 1 CL0123
Cotton_A_23104_CDS 7 251 4 251 PF00335.20 Tetraspanin Family 4 229 229 88.7 4.6e-25 1 CL0347
Cotton_A_22461_CDS 39 147 38 149 PF14223.6 Retrotran_gag_2 Family 2 107 138 91.8 2.9e-26 1 CL0523
Cotton_A_29876_CDS 63 154 63 172 PF14226.6 DIOX_N Family 1 96 118 60.6 2.3e-16 1 CL0029
Cotton_A_29876_CDS 212 309 210 309 PF03171.20 2OG-FeII_Oxy Domain 4 101 101 96.5 1e-27 1 CL0029
Cotton_A_20658_CDS 11 137 11 137 PF02365.15 NAM Family 1 126 126 126.7 9.5e-37 1 No_clan
Cotton_A_35952_CDS 86 113 85 113 PF13181.6 TPR_8 Repeat 2 29 34 18.5 0.0016 1 CL0020
Cotton_A_35952_CDS 176 205 173 206 PF13181.6 TPR_8 Repeat 4 33 34 13.8 0.05 1 CL0020
Cotton_A_18486_CDS 53 745 18 745 PF03030.16 H_PPase Family 21 650 650 857.1 9.6e-258 1 No_clan
Cotton_A_20634_CDS 11 107 11 109 PF03195.14 LOB Family 1 97 99 140.7 1.8e-41 1 No_clan
Cotton_A_22801_CDS 9 129 1 129 PF04720.12 PDDEXK_6 Family 80 204 221 133.7 9e-39 1 No_clan
Cotton_A_06161_CDS 12 136 12 136 PF02365.15 NAM Family 1 126 126 134.6 3.4e-39 1 No_clan
Cotton_A_18422_CDS 41 76 39 79 PF00646.33 F-box Domain 3 38 48 28.2 1.2e-06 1 CL0271
Cotton_A_31194_CDS 2 59 1 71 PF01566.18 Nramp Family 119 176 358 34.9 7.9e-09 1 CL0062
Cotton_A_31194_CDS 69 144 60 144 PF01566.18 Nramp Family 282 358 358 41.5 7.9e-11 1 CL0062
Cotton_A_06384_CDS 8 92 2 93 PF13456.6 RVT_3 Domain 38 123 124 47.9 1e-12 1 CL0219
Cotton_A_31950_CDS 39 194 38 194 PF00582.26 Usp Domain 2 141 141 108.3 4.4e-31 1 CL0039
Cotton_A_05257_CDS 75 166 75 166 PF13837.6 Myb_DNA-bind_4 Domain 1 90 90 88.6 2.6e-25 1 CL0123
Cotton_A_06921_CDS 42 127 36 128 PF02298.17 Cu_bind_like Domain 7 83 84 28.4 1.3e-06 1 CL0026
Cotton_A_32784_CDS 5 50 5 51 PF00249.31 Myb_DNA-binding Domain 1 45 46 65.0 5e-18 1 CL0123
Cotton_A_32784_CDS 59 100 57 102 PF00249.31 Myb_DNA-binding Domain 3 44 46 56.0 3.3e-15 1 CL0123
Cotton_A_15810_CDS 162 205 161 205 PF13639.6 zf-RING_2 Domain 2 44 44 50.2 2.4e-13 1 CL0229
Cotton_A_12063_CDS 7 139 6 139 PF04535.12 DUF588 Domain 2 150 150 106.5 1e-30 1 CL0396
Cotton_A_32452_CDS 45 269 45 269 PF03087.14 DUF241 Family 1 234 234 227.7 1.7e-67 1 CL0133
Cotton_A_22095_CDS 113 178 112 178 PF13499.6 EF-hand_7 Domain 2 71 71 45.0 1.1e-11 1 CL0220
Cotton_A_12486_CDS 100 406 99 407 PF02383.18 Syja_N Family 2 319 320 139.0 2.1e-40 1 CL0031
Cotton_A_12486_CDS 525 555 525 555 PF00397.26 WW Domain 1 31 31 45.7 4.8e-12 1 CL0680
Cotton_A_27200_CDS 103 131 83 131 PF03765.15 CRAL_TRIO_N Domain 27 54 54 28.1 1.7e-06 1 CL0214
Cotton_A_27200_CDS 155 321 154 321 PF00650.20 CRAL_TRIO Domain 2 159 159 118.0 3.1e-34 1 CL0512
Cotton_A_12761_CDS 41 76 39 77 PF00646.33 F-box Domain 3 38 48 19.8 0.00055 1 CL0271
Cotton_A_12761_CDS 207 231 207 231 PF13516.6 LRR_6 Repeat 1 24 24 18.5 0.0014 1 CL0022
Cotton_A_12761_CDS 234 257 233 257 PF13516.6 LRR_6 Repeat 2 24 24 10.6 0.47 1 CL0022
Cotton_A_12761_CDS 259 283 259 283 PF13516.6 LRR_6 Repeat 1 24 24 11.2 0.31 1 CL0022
Cotton_A_23848_CDS 117 521 107 524 PF00860.20 Xan_ur_permease Family 33 386 389 92.0 3.2e-26 1 CL0062
Cotton_A_16926_CDS 1 704 1 705 PF05758.12 Ycf1 Family 30 753 945 1181.3 0 1 No_clan
Cotton_A_04911_CDS 13 269 13 271 PF00108.23 Thiolase_N Domain 1 258 260 294.5 6.3e-88 1 CL0046
Cotton_A_04911_CDS 279 399 278 400 PF02803.18 Thiolase_C Domain 2 122 123 146.4 2.9e-43 1 CL0046
Cotton_A_26010_CDS 7 70 6 70 PF00226.31 DnaJ Domain 2 63 63 75.7 2.3e-21 1 CL0392
Cotton_A_17036_CDS 64 178 63 179 PF07732.15 Cu-oxidase_3 Domain 2 118 119 144.5 1.4e-42 1 CL0026
Cotton_A_17036_CDS 192 339 190 340 PF00394.22 Cu-oxidase Domain 4 158 159 146.4 7.5e-43 1 CL0026
Cotton_A_17036_CDS 439 572 438 573 PF07731.14 Cu-oxidase_2 Domain 2 136 137 136.2 5.8e-40 1 CL0026
Cotton_A_35242_CDS 139 225 116 227 PF09405.10 Btz Domain 27 128 130 61.9 7.1e-17 1 No_clan
Cotton_A_01386_CDS 21 59 12 64 PF00338.22 Ribosomal_S10 Family 15 53 98 31.2 1.9e-07 1 No_clan
Cotton_A_34566_CDS 315 532 315 532 PF14633.6 SH2_2 Domain 1 216 216 241.5 6.3e-72 1 CL0541
Cotton_A_20030_CDS 26 261 23 261 PF13561.6 adh_short_C2 Domain 3 234 234 193.9 3e-57 1 CL0063
Cotton_A_01777_CDS 89 243 89 243 PF00005.27 ABC_tran Domain 1 137 137 94.0 1.1e-26 1 CL0023
Cotton_A_01777_CDS 386 594 384 594 PF01061.24 ABC2_membrane Family 3 210 210 141.2 2.9e-41 1 CL0181
Cotton_A_10311_CDS 48 90 47 92 PF00249.31 Myb_DNA-binding Domain 2 44 46 43.8 2.2e-11 1 CL0123
Cotton_A_02107_CDS 46 248 45 250 PF03087.14 DUF241 Family 2 205 234 217.5 2.2e-64 1 CL0133
Cotton_A_38570_CDS 39 95 36 105 PF01221.18 Dynein_light Domain 4 62 86 86.2 1.4e-24 1 No_clan
Cotton_A_21569_CDS 45 236 45 243 PF00106.25 adh_short Domain 1 186 195 159.5 6.6e-47 1 CL0063
Cotton_A_11552_CDS 32 108 2 139 PF00201.18 UDPGT Family 320 393 499 36.0 3.4e-09 1 CL0113
Cotton_A_33186_CDS 111 175 111 175 PF12738.7 PTCB-BRCT Family 1 63 63 75.8 1.9e-21 1 CL0459
Cotton_A_33186_CDS 918 983 912 984 PF00533.26 BRCT Family 16 78 79 34.9 1.5e-08 1 CL0459
Cotton_A_33186_CDS 1177 1229 1176 1230 PF00628.29 PHD Domain 2 51 52 33.2 3.5e-08 1 CL0390
Cotton_A_08401_CDS 53 148 53 159 PF14226.6 DIOX_N Family 1 101 118 95.3 4e-27 1 CL0029
Cotton_A_08401_CDS 205 303 203 303 PF03171.20 2OG-FeII_Oxy Domain 3 101 101 87.6 6.4e-25 1 CL0029
Cotton_A_29800_CDS 623 695 596 695 PF07839.11 CaM_binding Domain 45 117 117 53.1 4.9e-14 1 No_clan
Cotton_A_16126_CDS 112 238 110 238 PF03099.19 BPL_LplA_LipB Domain 3 131 131 101.0 4.6e-29 1 CL0040
Cotton_A_16126_CDS 312 360 312 362 PF02237.17 BPL_C Domain 1 41 48 29.2 6.1e-07 1 CL0206
Cotton_A_37918_CDS 71 188 60 188 PF00134.23 Cyclin_N Domain 15 127 127 88.6 2.7e-25 1 CL0065
Cotton_A_37918_CDS 190 315 190 317 PF02984.19 Cyclin_C Domain 1 117 119 59.9 2.4e-16 1 CL0065
Cotton_A_40125_CDS 236 307 236 308 PF04564.15 U-box Domain 1 72 73 78.5 3.3e-22 1 CL0229
Cotton_A_40125_CDS 521 558 519 559 PF00514.23 Arm Repeat 3 40 41 26.2 5.5e-06 1 CL0020
Cotton_A_40125_CDS 560 599 560 600 PF00514.23 Arm Repeat 1 40 41 30.9 1.9e-07 1 CL0020
Cotton_A_40125_CDS 603 640 602 641 PF00514.23 Arm Repeat 3 40 41 26.5 4.6e-06 1 CL0020
Cotton_A_06044_CDS 49 74 49 75 PF01535.20 PPR Family 4 29 31 16.2 0.009 1 CL0020
Cotton_A_06044_CDS 77 106 77 107 PF01535.20 PPR Family 1 30 31 29.2 6.3e-07 1 CL0020
Cotton_A_06044_CDS 108 137 108 138 PF01535.20 PPR Family 1 30 31 28.1 1.4e-06 1 CL0020
Cotton_A_06044_CDS 139 163 139 166 PF01535.20 PPR Family 1 25 31 20.8 0.0003 1 CL0020
Cotton_A_06044_CDS 171 199 170 200 PF01535.20 PPR Family 2 30 31 20.5 0.00037 1 CL0020
Cotton_A_06044_CDS 269 316 268 317 PF13041.6 PPR_2 Repeat 2 49 50 44.4 1.4e-11 1 CL0020
Cotton_A_12225_CDS 20 119 20 120 PF09816.9 EAF Domain 1 98 100 77.2 1.1e-21 1 No_clan
Cotton_A_13528_CDS 44 85 10 89 PF14368.6 LTP_2 Family 23 67 97 22.3 0.00011 1 CL0482
Cotton_A_13972_CDS 22 263 21 265 PF12146.8 Hydrolase_4 Family 2 237 239 214.9 9.4e-64 1 CL0028
Cotton_A_11656_CDS 31 172 30 181 PF00106.25 adh_short Domain 2 139 195 86.5 1.5e-24 1 CL0063
Cotton_A_09079_CDS 72 237 71 240 PF00270.29 DEAD Domain 2 173 176 130.2 6.8e-38 1 CL0023
Cotton_A_09079_CDS 277 384 275 384 PF00271.31 Helicase_C Family 3 111 111 95.8 2e-27 1 CL0023
Cotton_A_14340_CDS 69 177 69 189 PF03140.15 DUF247 Family 1 108 397 50.0 2.6e-13 1 No_clan
Cotton_A_29138_CDS 12 91 9 101 PF18052.1 Rx_N Domain 4 83 93 85.8 1.8e-24 1 No_clan
Cotton_A_39576_CDS 19 122 19 131 PF02338.19 OTU Family 1 98 127 81.3 7.9e-23 1 CL0125
Cotton_A_34236_CDS 26 135 24 136 PF07714.17 Pkinase_Tyr Domain 3 116 259 61.6 6.6e-17 1 CL0016
Cotton_A_18123_CDS 17 142 17 142 PF02365.15 NAM Family 1 126 126 142.0 1.8e-41 1 No_clan
Cotton_A_07547_CDS 57 107 57 108 PF00847.20 AP2 Domain 1 53 54 47.9 1.1e-12 1 CL0081
Cotton_A_38631_CDS 52 382 52 391 PF00295.17 Glyco_hydro_28 Domain 1 323 325 341.6 4.1e-102 1 CL0268
Cotton_A_21310_CDS 110 233 110 235 PF04536.14 TPM_phosphatase Domain 1 123 125 59.3 4e-16 1 CL0063
Cotton_A_06168_CDS 12 91 12 91 PF05008.15 V-SNARE Family 1 79 79 83.9 7.8e-24 1 CL0147
Cotton_A_06168_CDS 125 189 125 190 PF12352.8 V-SNARE_C Domain 1 65 66 82.3 2.3e-23 1 CL0147
Cotton_A_25293_CDS 7 41 6 42 PF13476.6 AAA_23 Domain 2 33 200 32.4 1.2e-07 1 CL0023
Cotton_A_25293_CDS 72 251 43 258 PF13476.6 AAA_23 Domain 65 200 200 40.6 3.7e-10 1 CL0023
Cotton_A_25293_CDS 693 730 686 731 PF04423.14 Rad50_zn_hook Motif 14 51 52 24.7 1.6e-05 1 No_clan
Cotton_A_00145_CDS 15 441 8 441 PF00083.24 Sugar_tr Family 44 452 452 330.7 1.5e-98 1 CL0015
Cotton_A_26608_CDS 95 119 95 124 PF02151.19 UVR Family 7 31 36 21.7 0.00012 1 CL0671
Cotton_A_26608_CDS 132 156 129 157 PF02151.19 UVR Family 9 33 36 23.8 2.5e-05 1 CL0671
Cotton_A_26608_CDS 186 268 183 269 PF04379.14 DUF525 Family 4 86 87 109.4 7.8e-32 1 CL0159
Cotton_A_03709_CDS 17 216 17 225 PF00108.23 Thiolase_N Domain 1 201 260 232.7 4.6e-69 1 CL0046
Cotton_A_03709_CDS 240 301 233 303 PF00108.23 Thiolase_N Domain 199 258 260 56.3 3e-15 1 CL0046
Cotton_A_03709_CDS 311 431 310 432 PF02803.18 Thiolase_C Domain 2 122 123 151.4 8.3e-45 1 CL0046
Cotton_A_22618_CDS 155 287 152 297 PF01529.20 DHHC Family 4 126 134 101.5 3.9e-29 1 No_clan
Cotton_A_06998_CDS 14 234 13 234 PF00230.20 MIP Family 2 227 227 251.4 8.2e-75 1 No_clan
Cotton_A_38486_CDS 48 427 45 437 PF13520.6 AA_permease_2 Family 4 379 425 177.7 3.4e-52 1 CL0062
Cotton_A_10323_CDS 181 206 180 207 PF05553.11 DUF761 Family 2 27 36 38.2 7.6e-10 1 No_clan
Cotton_A_34260_CDS 158 396 154 397 PF00931.22 NB-ARC Domain 2 251 252 182.3 9.4e-54 1 CL0023
Cotton_A_34260_CDS 512 567 511 569 PF13855.6 LRR_8 Repeat 2 58 61 35.5 6.3e-09 1 CL0022
Cotton_A_34260_CDS 582 638 581 640 PF13855.6 LRR_8 Repeat 2 58 61 29.8 3.6e-07 1 CL0022
Cotton_A_25267_CDS 91 328 90 328 PF01063.19 Aminotran_4 Domain 2 223 223 117.4 8.1e-34 1 No_clan
Cotton_A_05639_CDS 485 690 485 691 PF00924.18 MS_channel Family 1 205 206 83.9 1.1e-23 1 No_clan
Cotton_A_28523_CDS 51 295 51 295 PF00956.18 NAP Family 1 270 270 278.7 4.1e-83 1 No_clan
Cotton_A_39396_CDS 38 152 37 153 PF08240.12 ADH_N Domain 2 108 109 63.1 1.9e-17 1 CL0296
Cotton_A_31085_CDS 98 144 95 144 PF00010.26 HLH Domain 4 53 53 51.3 8.5e-14 1 No_clan
Cotton_A_25164_CDS 56 112 56 112 PF08246.12 Inhibitor_I29 Domain 1 58 58 46.3 4.4e-12 1 No_clan
Cotton_A_25164_CDS 138 353 138 353 PF00112.23 Peptidase_C1 Domain 1 218 218 262.8 3.2e-78 1 CL0125
Cotton_A_22386_CDS 13 98 11 99 PF00887.19 ACBP Domain 3 82 85 66.3 2.1e-18 1 CL0632
Cotton_A_22386_CDS 184 224 183 225 PF01344.25 Kelch_1 Repeat 2 42 46 33.6 2.1e-08 1 CL0186
Cotton_A_22386_CDS 295 344 294 346 PF13418.6 Kelch_4 Repeat 2 47 49 37.7 1.5e-09 1 CL0186
Cotton_A_22386_CDS 357 403 356 405 PF13415.6 Kelch_3 Domain 2 47 49 37.6 1.8e-09 1 CL0186
Cotton_A_05823_CDS 17 72 17 77 PF00076.22 RRM_1 Domain 1 55 70 58.3 4.8e-16 1 CL0221
Cotton_A_10556_CDS 98 364 93 366 PF00069.25 Pkinase Domain 6 260 264 132.0 2.4e-38 1 CL0016
Cotton_A_12298_CDS 44 353 43 353 PF02535.22 Zip Family 2 333 333 256.8 2.9e-76 1 CL0184
Cotton_A_16490_CDS 52 126 46 141 PF00504.21 Chloroa_b-bind Family 12 94 161 26.2 1e-05 1 No_clan
Cotton_A_06974_CDS 6 245 5 245 PF00121.18 TIM Domain 2 243 243 295.0 3.6e-88 1 CL0036
Cotton_A_15639_CDS 5 99 3 105 PF14111.6 DUF4283 Domain 40 139 145 50.0 2.1e-13 1 No_clan
Cotton_A_38007_CDS 62 117 62 117 PF16450.5 Prot_ATP_ID_OB Domain 1 57 57 38.6 7.7e-10 1 CL0021
Cotton_A_38007_CDS 175 308 175 308 PF00004.29 AAA Domain 1 132 132 143.7 4.2e-42 1 CL0023
Cotton_A_38007_CDS 331 373 330 374 PF17862.1 AAA_lid_3 Domain 2 44 45 38.0 1.1e-09 1 CL0671
Cotton_A_00410_CDS 7 95 2 96 PF00125.24 Histone Domain 38 130 131 78.4 6.2e-22 1 CL0012
Cotton_A_38012_CDS 219 532 215 535 PF16529.5 Ge1_WD40 Domain 6 324 329 77.9 6.6e-22 1 CL0186
Cotton_A_35970_CDS 18 109 18 110 PF02362.21 B3 Family 1 100 101 49.9 2.2e-13 1 CL0405
Cotton_A_35970_CDS 189 262 173 275 PF02362.21 B3 Family 13 87 101 52.9 2.6e-14 1 CL0405
Cotton_A_35970_CDS 333 430 332 432 PF02362.21 B3 Family 1 99 101 60.5 1.1e-16 1 CL0405
Cotton_A_35970_CDS 469 551 461 554 PF02362.21 B3 Family 10 96 101 40.3 2.2e-10 1 CL0405
Cotton_A_29699_CDS 95 469 95 469 PF03759.13 PRONE Family 1 363 363 577.6 8.1e-174 1 No_clan
Cotton_A_08856_CDS 1 321 1 323 PF00501.28 AMP-binding Family 69 414 423 174.7 2.3e-51 1 CL0378
Cotton_A_11617_CDS 23 87 23 87 PF05641.12 Agenet Domain 1 61 61 31.8 1.5e-07 1 CL0049
Cotton_A_10498_CDS 81 380 80 381 PF03016.15 Exostosin Family 3 299 300 239.7 4.1e-71 1 No_clan
Cotton_A_37112_CDS 34 48 33 48 PF00098.23 zf-CCHC Domain 2 16 18 21.3 0.0002 1 CL0511
Cotton_A_06917_CDS 58 463 57 465 PF00860.20 Xan_ur_permease Family 2 387 389 221.9 1.1e-65 1 CL0062
Cotton_A_24704_CDS 48 161 48 161 PF06337.12 DUSP Domain 1 92 92 85.0 4.3e-24 1 No_clan
Cotton_A_24704_CDS 342 932 342 932 PF00443.29 UCH Family 1 257 257 271.4 7.4e-81 1 CL0125
Cotton_A_26551_CDS 2 64 2 64 PF00280.18 potato_inhibit Domain 1 64 64 97.5 5.3e-28 1 CL0367
Cotton_A_21900_CDS 321 363 319 363 PF13639.6 zf-RING_2 Domain 3 44 44 31.2 2e-07 1 CL0229
Cotton_A_21900_CDS 413 459 413 460 PF00628.29 PHD Domain 1 51 52 36.4 3.5e-09 1 CL0390
Cotton_A_07831_CDS 20 66 20 83 PF09764.9 Nt_Gln_amidase Family 1 46 184 42.8 4.1e-11 1 CL0125
Cotton_A_07831_CDS 97 254 79 254 PF09764.9 Nt_Gln_amidase Family 41 184 184 165.3 1.1e-48 1 CL0125
Cotton_A_33036_CDS 43 203 43 203 PF01554.18 MatE Family 1 161 161 114.5 3.5e-33 1 CL0222
Cotton_A_33036_CDS 264 424 263 426 PF01554.18 MatE Family 2 159 161 82.2 3e-23 1 CL0222
Cotton_A_04520_CDS 34 147 33 149 PF07732.15 Cu-oxidase_3 Domain 2 117 119 135.0 1.2e-39 1 CL0026
Cotton_A_22257_CDS 130 368 129 368 PF12146.8 Hydrolase_4 Family 2 239 239 231.0 1.1e-68 1 CL0028
Cotton_A_24183_CDS 14 121 14 122 PF00639.21 Rotamase Domain 1 96 97 87.1 1.1e-24 1 CL0487
Cotton_A_01075_CDS 23 188 21 195 PF00069.25 Pkinase Domain 3 158 264 100.9 7.6e-29 1 CL0016
Cotton_A_01075_CDS 242 347 236 347 PF00069.25 Pkinase Domain 149 264 264 74.5 8.5e-21 1 CL0016
Cotton_A_19683_CDS 83 418 80 423 PF03016.15 Exostosin Family 4 298 300 272.6 3.7e-81 1 No_clan
Cotton_A_03381_CDS 4 38 2 50 PF03105.19 SPX Domain 3 37 384 31.8 1.4e-07 1 No_clan
Cotton_A_03381_CDS 101 146 97 148 PF03105.19 SPX Domain 341 382 384 31.0 2.5e-07 1 No_clan
Cotton_A_03381_CDS 260 456 259 472 PF07690.16 MFS_1 Family 3 196 353 53.0 2.5e-14 1 CL0015
Cotton_A_19719_CDS 18 129 18 130 PF14223.6 Retrotran_gag_2 Family 1 112 138 117.3 3.7e-34 1 CL0523
Cotton_A_06470_CDS 13 105 12 112 PF03226.14 Yippee-Mis18 Domain 2 90 105 52.3 5.4e-14 1 CL0080
Cotton_A_21118_CDS 43 201 41 204 PF00160.21 Pro_isomerase Domain 3 155 158 155.2 1.6e-45 1 CL0475
Cotton_A_26130_CDS 31 168 4 168 PF04520.13 Senescence_reg Family 38 168 168 127.2 1.1e-36 1 No_clan
Cotton_A_26288_CDS 7 70 7 71 PF04212.18 MIT Domain 2 64 65 77.4 6.6e-22 1 No_clan
Cotton_A_29750_CDS 31 89 31 92 PF07651.16 ANTH Domain 1 56 277 58.4 5.4e-16 1 CL0009
Cotton_A_01926_CDS 11 28 8 32 PF13202.6 EF-hand_5 Domain 5 22 25 20.8 0.00018 1 CL0220
Cotton_A_01926_CDS 32 69 24 70 PF13833.6 EF-hand_8 Domain 18 54 55 23.2 4.4e-05 1 CL0220
Cotton_A_01926_CDS 77 140 76 140 PF13499.6 EF-hand_7 Domain 2 71 71 62.7 3.2e-17 1 CL0220
Cotton_A_00499_CDS 6 336 6 337 PF16363.5 GDP_Man_Dehyd Domain 1 331 332 214.1 3.3e-63 1 CL0063
Cotton_A_36414_CDS 17 76 17 78 PF13921.6 Myb_DNA-bind_6 Domain 1 58 60 56.2 3e-15 1 CL0123
Cotton_A_10289_CDS 4 29 1 31 PF14364.6 DUF4408 Family 6 31 33 29.4 4.9e-07 1 No_clan
Cotton_A_10289_CDS 221 254 220 255 PF05553.11 DUF761 Family 2 35 36 60.3 9.1e-17 1 No_clan
Cotton_A_17774_CDS 237 398 164 406 PF00201.18 UDPGT Family 270 409 499 88.2 5.1e-25 1 CL0113
Cotton_A_11309_CDS 3 126 3 126 PF07047.12 OPA3 Family 1 125 125 138.2 1.1e-40 1 No_clan
Cotton_A_00477_CDS 14 62 14 62 PF00249.31 Myb_DNA-binding Domain 1 46 46 52.2 5.1e-14 1 CL0123
Cotton_A_00477_CDS 69 111 68 113 PF00249.31 Myb_DNA-binding Domain 2 44 46 40.2 2.9e-10 1 CL0123
Cotton_A_11360_CDS 52 396 52 396 PF00274.19 Glycolytic Domain 1 349 349 519.3 3.4e-156 1 CL0035
Cotton_A_12064_CDS 29 281 23 283 PF00248.21 Aldo_ket_red Domain 22 292 294 160.0 7e-47 1 No_clan
Cotton_A_08670_CDS 669 694 649 694 PF12678.7 zf-rbx1 Domain 30 55 55 37.0 3e-09 1 CL0229
Cotton_A_21228_CDS 9 94 7 95 PF12624.7 Chorein_N Family 29 115 116 77.0 1.2e-21 1 No_clan
Cotton_A_21228_CDS 118 186 118 210 PF16908.5 VPS13 Family 1 66 236 77.8 1.1e-21 1 No_clan
Cotton_A_12302_CDS 80 167 80 167 PF03101.15 FAR1 Domain 1 90 90 102.9 1.1e-29 1 CL0274
Cotton_A_12302_CDS 287 380 287 381 PF10551.9 MULE Domain 1 95 96 89.6 1.3e-25 1 CL0219
Cotton_A_12302_CDS 576 602 564 603 PF04434.17 SWIM Domain 13 39 40 28.3 1e-06 1 No_clan
Cotton_A_03150_CDS 94 236 93 240 PF10358.9 NT-C2 Family 2 140 146 56.4 2.7e-15 1 CL0154
Cotton_A_00033_CDS 32 357 32 357 PF12819.7 Malectin_like Domain 1 336 336 220.7 2.8e-65 1 CL0202
Cotton_A_00033_CDS 367 404 365 404 PF08263.12 LRRNT_2 Family 3 41 41 21.4 0.00024 1 No_clan
Cotton_A_27072_CDS 52 375 50 375 PF01263.20 Aldose_epim Family 4 301 301 257.8 1.3e-76 1 CL0103
Cotton_A_24416_CDS 6 80 1 80 PF05670.13 NFACT-R_1 Domain 35 109 109 73.4 2e-20 1 CL0684
Cotton_A_03573_CDS 8 135 8 135 PF02365.15 NAM Family 1 126 126 130.5 6.5e-38 1 No_clan
Cotton_A_35632_CDS 41 184 41 184 PF00005.27 ABC_tran Domain 1 137 137 109.7 1.5e-31 1 CL0023
Cotton_A_17486_CDS 6 100 5 103 PF18052.1 Rx_N Domain 2 92 93 79.3 1.9e-22 1 No_clan
Cotton_A_17486_CDS 173 394 172 405 PF00931.22 NB-ARC Domain 2 222 252 175.4 1.2e-51 1 CL0023
Cotton_A_24793_CDS 18 143 16 143 PF02365.15 NAM Family 2 126 126 122.8 1.5e-35 1 No_clan
Cotton_A_35877_CDS 4 56 1 57 PF14111.6 DUF4283 Domain 94 144 145 36.1 4.2e-09 1 No_clan
Cotton_A_36071_CDS 31 309 31 309 PF07651.16 ANTH Domain 1 277 277 323.4 8.8e-97 1 CL0009
Cotton_A_24523_CDS 3 75 2 75 PF02798.20 GST_N Domain 2 76 76 71.8 4.4e-20 1 CL0172
Cotton_A_24523_CDS 118 194 93 194 PF00043.25 GST_C Domain 24 93 93 26.3 6.4e-06 1 CL0497
Cotton_A_15667_CDS 65 304 65 304 PF06966.12 DUF1295 Family 1 235 235 224.0 1.8e-66 1 CL0115
Cotton_A_34115_CDS 89 499 89 570 PF01593.24 Amino_oxidase Domain 1 375 452 56.0 4.2e-15 1 CL0063
Cotton_A_06391_CDS 11 137 1 138 PF01915.22 Glyco_hydro_3_C Domain 44 154 204 77.2 1.6e-21 1 No_clan
Cotton_A_06391_CDS 139 203 136 203 PF14310.6 Fn3-like Family 9 71 71 35.5 7.7e-09 1 CL0159
Cotton_A_22538_CDS 2 63 1 63 PF01167.18 Tub Domain 188 241 241 91.1 9.2e-26 1 CL0395
Cotton_A_31651_CDS 45 158 26 158 PF01161.20 PBP Domain 10 132 132 50.5 2.5e-13 1 No_clan
Cotton_A_14396_CDS 80 147 64 165 PF01909.23 NTP_transf_2 Family 16 74 95 21.3 0.00024 1 CL0260
Cotton_A_37582_CDS 136 181 133 181 PF00010.26 HLH Domain 5 53 53 37.1 2.2e-09 1 No_clan
Cotton_A_36724_CDS 85 147 12 147 PF14510.6 ABC_trans_N Domain 30 81 81 37.5 2.7e-09 1 No_clan
Cotton_A_36724_CDS 172 265 172 284 PF00005.27 ABC_tran Domain 1 93 137 36.3 6.9e-09 1 CL0023
Cotton_A_36724_CDS 644 722 642 722 PF01061.24 ABC2_membrane Family 135 210 210 53.7 1.8e-14 1 CL0181
Cotton_A_36724_CDS 727 790 727 790 PF08370.11 PDR_assoc Family 1 65 65 90.9 3.1e-26 1 No_clan
Cotton_A_17763_CDS 175 444 172 448 PF00224.21 PK Family 67 343 348 298.3 6.1e-89 1 CL0151
Cotton_A_17763_CDS 465 559 462 570 PF02887.16 PK_C Domain 4 102 117 64.4 1.1e-17 1 No_clan
Cotton_A_07677_CDS 109 158 108 159 PF00847.20 AP2 Domain 3 53 54 43.9 2e-11 1 CL0081
Cotton_A_20433_CDS 214 265 214 265 PF00249.31 Myb_DNA-binding Domain 1 46 46 26.3 6e-06 1 CL0123
Cotton_A_05749_CDS 55 129 55 137 PF01715.17 IPPT Domain 1 74 228 79.2 3.9e-22 1 CL0023
Cotton_A_05749_CDS 138 233 131 241 PF01715.17 IPPT Domain 141 218 228 41.2 1.5e-10 1 CL0023
Cotton_A_07347_CDS 133 315 129 317 PF00544.19 Pec_lyase_C Domain 29 209 211 73.3 2e-20 1 CL0268
Cotton_A_20828_CDS 3 94 2 96 PF00466.20 Ribosomal_L10 Family 12 98 100 56.6 2.3e-15 1 No_clan
Cotton_A_20828_CDS 100 169 100 169 PF17777.1 RL10P_insert Domain 1 71 71 57.1 1.4e-15 1 No_clan
Cotton_A_15554_CDS 179 222 178 222 PF13639.6 zf-RING_2 Domain 2 44 44 49.7 3.3e-13 1 CL0229
Cotton_A_22215_CDS 337 664 332 667 PF05804.12 KAP Family 272 586 708 20.2 0.00014 1 CL0020
Cotton_A_12940_CDS 24 97 21 100 PF09279.11 EF-hand_like Domain 10 80 86 23.0 8.4e-05 1 CL0220
Cotton_A_12940_CDS 110 252 110 253 PF00388.19 PI-PLC-X Family 1 144 145 167.4 1.4e-49 1 CL0384
Cotton_A_12940_CDS 351 437 336 437 PF00387.19 PI-PLC-Y Family 28 115 115 95.1 3.3e-27 1 CL0384
Cotton_A_12940_CDS 455 557 454 565 PF00168.30 C2 Domain 2 94 103 51.0 1.4e-13 1 CL0154
Cotton_A_37554_CDS 172 257 172 260 PF03088.16 Str_synth Family 1 86 89 77.4 6.7e-22 1 CL0186
Cotton_A_00204_CDS 129 184 128 185 PF05383.17 La Domain 3 58 59 41.9 7.5e-11 1 CL0123
Cotton_A_17967_CDS 1 123 1 123 PF07837.12 FTCD_N Domain 62 176 176 104.5 5.2e-30 1 No_clan
Cotton_A_18562_CDS 57 247 55 252 PF00106.25 adh_short Domain 4 188 195 132.9 9e-39 1 CL0063
Cotton_A_30134_CDS 209 494 208 494 PF03000.14 NPH3 Family 2 258 258 320.1 1.2e-95 1 No_clan
Cotton_A_08500_CDS 51 112 51 115 PF00076.22 RRM_1 Domain 1 65 70 24.0 2.6e-05 1 CL0221
Cotton_A_08500_CDS 224 285 224 287 PF00076.22 RRM_1 Domain 1 65 70 40.0 2.5e-10 1 CL0221
Cotton_A_21575_CDS 4 40 3 49 PF00646.33 F-box Domain 2 37 48 20.9 0.00023 1 CL0271
Cotton_A_15022_CDS 19 97 19 121 PF00332.18 Glyco_hydro_17 Domain 1 80 313 48.2 1.1e-12 1 CL0058
Cotton_A_15022_CDS 131 364 116 365 PF00332.18 Glyco_hydro_17 Domain 85 312 313 153.4 1e-44 1 CL0058
Cotton_A_15022_CDS 386 455 386 456 PF07983.13 X8 Domain 1 75 76 63.2 2.8e-17 1 No_clan
Cotton_A_35811_CDS 128 228 127 228 PF00829.21 Ribosomal_L21p Family 2 101 101 112.4 9.9e-33 1 No_clan
Cotton_A_27562_CDS 43 103 43 104 PF13921.6 Myb_DNA-bind_6 Domain 1 59 60 58.3 6.5e-16 1 CL0123
Cotton_A_21345_CDS 101 228 100 228 PF14108.6 DUF4281 Family 2 127 127 133.1 7e-39 1 No_clan
Cotton_A_40811_CDS 141 195 134 196 PF01486.17 K-box Family 9 63 93 60.4 1.5e-16 1 No_clan
Cotton_A_00272_CDS 1 229 1 230 PF00149.28 Metallophos Domain 1 203 204 53.1 5.7e-14 1 CL0163
Cotton_A_00272_CDS 242 364 241 366 PF05011.13 DBR1 Domain 2 137 139 100.5 1e-28 1 No_clan
Cotton_A_21046_CDS 213 255 213 256 PF12937.7 F-box-like Domain 5 47 48 26.2 5.4e-06 1 CL0271
Cotton_A_36604_CDS 2 97 1 98 PF14223.6 Retrotran_gag_2 Family 8 103 138 44.1 1.5e-11 1 CL0523
Cotton_A_16511_CDS 8 94 1 94 PF14368.6 LTP_2 Family 13 97 97 60.9 9.5e-17 1 CL0482
Cotton_A_10212_CDS 2 325 1 325 PF02705.16 K_trans Family 216 534 534 343.1 2.5e-102 1 CL0062
Cotton_A_03237_CDS 25 95 25 95 PF11976.8 Rad60-SLD Family 1 72 72 84.0 4.6e-24 1 CL0072
Cotton_A_26097_CDS 28 136 27 137 PF13947.6 GUB_WAK_bind Domain 2 105 106 88.7 3.7e-25 1 No_clan
Cotton_A_26097_CDS 254 359 254 360 PF13947.6 GUB_WAK_bind Domain 1 105 106 90.4 1.1e-25 1 No_clan
Cotton_A_26097_CDS 650 863 650 873 PF00069.25 Pkinase Domain 1 204 264 162.4 1.3e-47 1 CL0016
Cotton_A_05945_CDS 297 538 297 538 PF07059.12 DUF1336 Family 1 229 229 214.1 2.6e-63 1 No_clan
Cotton_A_11166_CDS 105 205 104 209 PF04367.13 DUF502 Family 2 102 106 101.3 2.4e-29 1 No_clan
Cotton_A_35612_CDS 686 888 681 889 PF01326.19 PPDK_N Family 133 309 328 68.1 7.9e-19 1 CL0179
Cotton_A_03770_CDS 26 148 25 150 PF18029.1 Glyoxalase_6 Domain 2 105 107 28.6 1.9e-06 1 CL0104
Cotton_A_00613_CDS 6 107 5 107 PF02519.14 Auxin_inducible Family 2 90 90 83.1 1.2e-23 1 No_clan
Cotton_A_03315_CDS 56 165 56 171 PF03552.14 Cellulose_synt Family 1 111 722 203.1 8.1e-60 1 CL0110
Cotton_A_11659_CDS 270 414 255 431 PF00201.18 UDPGT Family 274 409 499 103.0 1.7e-29 1 CL0113
Cotton_A_18763_CDS 25 300 22 301 PF01095.19 Pectinesterase Family 3 297 298 253.4 1.9e-75 1 CL0268
Cotton_A_32574_CDS 115 416 100 420 PF00860.20 Xan_ur_permease Family 33 302 389 46.9 1.5e-12 1 CL0062
Cotton_A_08995_CDS 80 118 57 118 PF16881.5 LIAS_N Family 70 108 108 37.4 2.7e-09 1 No_clan
Cotton_A_08995_CDS 139 302 138 303 PF04055.21 Radical_SAM Domain 2 166 167 62.0 9e-17 1 CL0036
Cotton_A_16200_CDS 50 91 48 104 PF08561.10 Ribosomal_L37 Family 3 44 120 53.8 2.5e-14 1 No_clan
Cotton_A_00199_CDS 107 306 107 306 PF07816.11 DUF1645 Family 1 191 191 155.8 2e-45 1 No_clan
Cotton_A_02312_CDS 79 134 79 135 PF00412.22 LIM Domain 1 57 58 37.2 2.5e-09 1 CL0167
Cotton_A_02135_CDS 19 569 17 571 PF05701.11 WEMBL Family 3 561 562 179.4 1.2e-52 1 No_clan
Cotton_A_23945_CDS 2 135 1 136 PF00892.20 EamA Family 7 136 137 38.5 1.2e-09 1 CL0184
Cotton_A_27619_CDS 197 396 197 417 PF04577.14 DUF563 Family 1 188 209 71.3 1.2e-19 1 No_clan
Cotton_A_03276_CDS 5 97 4 116 PF14226.6 DIOX_N Family 2 101 118 55.9 6.5e-15 1 CL0029
Cotton_A_03276_CDS 159 253 154 253 PF03171.20 2OG-FeII_Oxy Domain 6 101 101 96.0 1.5e-27 1 CL0029
Cotton_A_39097_CDS 20 103 14 105 PF03004.14 Transposase_24 Family 51 140 142 40.8 2.2e-10 1 No_clan
Cotton_A_23686_CDS 55 141 51 186 PF00651.31 BTB Domain 7 84 111 43.1 4e-11 1 CL0033
Cotton_A_23686_CDS 223 270 223 271 PF11900.8 DUF3420 Repeat 1 46 47 29.3 6.7e-07 1 CL0465
Cotton_A_23686_CDS 276 354 270 359 PF12796.7 Ank_2 Repeat 7 78 83 35.5 1.1e-08 1 CL0465
Cotton_A_23686_CDS 370 571 370 571 PF12313.8 NPR1_like_C Family 1 205 205 312.3 1.3e-93 1 No_clan
Cotton_A_22308_CDS 76 331 56 335 PF00481.21 PP2C Family 30 250 258 145.6 2e-42 1 CL0238
Cotton_A_16684_CDS 13 48 10 48 PF08263.12 LRRNT_2 Family 4 41 41 26.5 5.9e-06 1 No_clan
Cotton_A_16684_CDS 488 508 485 509 PF00560.33 LRR_1 Repeat 2 22 23 12.1 0.24 1 CL0022
Cotton_A_16684_CDS 631 904 629 906 PF00069.25 Pkinase Domain 3 260 264 172.8 8.7e-51 1 CL0016
Cotton_A_35011_CDS 26 99 26 103 PF09174.10 Maf1 Family 1 86 174 51.4 1.4e-13 1 No_clan
Cotton_A_35011_CDS 163 257 161 257 PF09174.10 Maf1 Family 85 174 174 81.9 6e-23 1 No_clan
Cotton_A_21422_CDS 6 235 5 237 PF00121.18 TIM Domain 2 241 243 266.1 2.5e-79 1 CL0036
Cotton_A_00524_CDS 124 210 122 210 PF13837.6 Myb_DNA-bind_4 Domain 3 90 90 69.3 2.7e-19 1 CL0123
Cotton_A_00524_CDS 385 460 384 463 PF13837.6 Myb_DNA-bind_4 Domain 2 86 90 43.7 2.7e-11 1 CL0123
Cotton_A_14788_CDS 26 91 24 100 PF00564.24 PB1 Domain 8 71 84 28.5 1.1e-06 1 CL0072
Cotton_A_14788_CDS 202 266 200 266 PF03108.15 DBD_Tnp_Mut Family 3 67 67 92.9 8.9e-27 1 CL0274
Cotton_A_14788_CDS 400 487 396 490 PF10551.9 MULE Domain 5 93 96 50.9 1.5e-13 1 CL0219
Cotton_A_14788_CDS 655 684 644 685 PF04434.17 SWIM Domain 10 39 40 32.2 6e-08 1 No_clan
Cotton_A_22229_CDS 20 81 20 94 PF06201.13 PITH Domain 1 52 152 30.9 2.6e-07 1 CL0202
Cotton_A_22229_CDS 153 248 146 248 PF06201.13 PITH Domain 52 152 152 80.2 1.8e-22 1 CL0202
Cotton_A_14890_CDS 6 445 4 445 PF02458.15 Transferase Family 3 434 434 287.2 1.8e-85 1 CL0149
Cotton_A_03656_CDS 119 403 119 403 PF00069.25 Pkinase Domain 1 264 264 235.1 8.5e-70 1 CL0016
Cotton_A_20164_CDS 7 256 6 256 PF00335.20 Tetraspanin Family 2 229 229 106.6 1.6e-30 1 CL0347
Cotton_A_36556_CDS 49 163 18 163 PF00583.25 Acetyltransf_1 Family 28 117 117 59.1 4.6e-16 1 CL0257
Cotton_A_37579_CDS 78 475 78 475 PF00450.22 Peptidase_S10 Domain 1 419 419 371.1 9.6e-111 1 CL0028
Cotton_A_31051_CDS 36 96 3 198 PF05097.12 DUF688 Family 54 96 446 21.8 8.8e-05 1 No_clan
Cotton_A_16384_CDS 74 119 74 119 PF12906.7 RINGv Domain 1 48 48 47.9 1.1e-12 1 CL0229
Cotton_A_16384_CDS 125 243 125 243 PF12428.8 DUF3675 Family 1 119 119 107.7 5.2e-31 1 No_clan
Cotton_A_02369_CDS 133 262 131 278 PF00293.28 NUDIX Domain 3 115 131 29.0 8.9e-07 1 CL0261
Cotton_A_22640_CDS 3 74 3 74 PF00240.23 ubiquitin Domain 1 72 72 116.6 3e-34 1 CL0072
Cotton_A_22640_CDS 102 147 102 147 PF01599.19 Ribosomal_S27 Domain 1 45 45 94.7 2.6e-27 1 CL0167
Cotton_A_02309_CDS 1 118 1 140 PF13561.6 adh_short_C2 Domain 73 187 234 98.2 5e-28 1 CL0063
Cotton_A_02771_CDS 261 470 260 470 PF14381.6 EDR1 Family 2 200 200 245.0 5.2e-73 1 CL0125
Cotton_A_02771_CDS 660 900 656 902 PF07714.17 Pkinase_Tyr Domain 13 257 259 204.2 2.1e-60 1 CL0016
Cotton_A_12971_CDS 16 124 16 166 PF01593.24 Amino_oxidase Domain 1 99 452 69.3 3.9e-19 1 CL0063
Cotton_A_12971_CDS 172 435 152 435 PF01593.24 Amino_oxidase Domain 193 452 452 174.3 5.4e-51 1 CL0063
Cotton_A_37505_CDS 3 52 1 53 PF02519.14 Auxin_inducible Family 40 89 90 56.6 2.2e-15 1 No_clan
Cotton_A_23523_CDS 46 179 43 179 PF00790.19 VHS Domain 5 141 141 85.9 2.2e-24 1 CL0009
Cotton_A_23523_CDS 242 315 241 316 PF03127.14 GAT Domain 2 76 77 62.8 2.7e-17 1 No_clan
Cotton_A_25316_CDS 120 470 114 473 PF00067.22 p450 Domain 103 460 463 264.1 2.2e-78 1 No_clan
Cotton_A_41111_CDS 25 95 24 98 PF13499.6 EF-hand_7 Domain 4 67 71 47.7 1.6e-12 1 CL0220
Cotton_A_32621_CDS 23 360 23 360 PF00443.29 UCH Family 1 257 257 207.9 1.7e-61 1 CL0125
Cotton_A_18237_CDS 2 145 1 146 PF00071.22 Ras Domain 28 161 162 134.3 2.9e-39 1 CL0023
Cotton_A_30886_CDS 82 115 81 116 PF00132.24 Hexapep Repeat 2 35 36 21.7 0.00012 1 CL0536
Cotton_A_30886_CDS 188 223 188 223 PF00132.24 Hexapep Repeat 1 36 36 29.2 5.2e-07 1 CL0536
Cotton_A_25877_CDS 15 149 15 149 PF04061.14 ORMDL Family 1 136 136 170.7 1.4e-50 1 No_clan
Cotton_A_04085_CDS 19 378 19 379 PF01008.17 IF-2B Family 1 269 282 219.2 6.2e-65 1 CL0246
Cotton_A_11302_CDS 67 310 62 313 PF00141.23 peroxidase Domain 6 226 229 236.3 3.5e-70 1 CL0617
Cotton_A_26712_CDS 33 118 30 132 PF00857.20 Isochorismatase Family 12 100 175 39.1 8.5e-10 1 No_clan
Cotton_A_07678_CDS 18 100 10 102 PF00234.22 Tryp_alpha_amyl Family 1 85 87 29.9 5.7e-07 1 CL0482
Cotton_A_32353_CDS 1 43 1 46 PF13724.6 DNA_binding_2 Domain 1 44 47 77.5 7.1e-22 1 No_clan
Cotton_A_32353_CDS 285 341 285 342 PF04844.13 Ovate Family 1 57 58 85.4 1.9e-24 1 No_clan
Cotton_A_03284_CDS 81 440 79 440 PF03514.14 GRAS Family 3 374 374 378.4 3.3e-113 1 CL0063
Cotton_A_19409_CDS 5 95 5 97 PF02362.21 B3 Family 1 98 101 48.3 7e-13 1 CL0405
Cotton_A_19409_CDS 243 333 240 335 PF02362.21 B3 Family 4 99 101 66.5 1.5e-18 1 CL0405
Cotton_A_23929_CDS 28 137 27 138 PF13947.6 GUB_WAK_bind Domain 2 105 106 79.9 2e-22 1 No_clan
Cotton_A_23929_CDS 249 356 248 357 PF13947.6 GUB_WAK_bind Domain 2 105 106 86.3 2.1e-24 1 No_clan
Cotton_A_23929_CDS 633 904 633 911 PF00069.25 Pkinase Domain 1 258 264 179.5 8.1e-53 1 CL0016
Cotton_A_23760_CDS 81 173 79 177 PF00168.30 C2 Domain 3 99 103 55.8 4.6e-15 1 CL0154
Cotton_A_23760_CDS 232 308 229 318 PF02893.20 GRAM Domain 6 76 114 40.4 2.3e-10 1 CL0266
Cotton_A_23760_CDS 413 559 412 559 PF16016.5 VASt Domain 2 154 154 111.5 4.7e-32 1 CL0209
Cotton_A_23405_CDS 20 102 20 102 PF05026.13 DCP2 Domain 1 83 83 97.7 3.5e-28 1 No_clan
Cotton_A_23405_CDS 106 220 104 226 PF00293.28 NUDIX Domain 3 122 131 52.3 5.7e-14 1 CL0261
Cotton_A_14450_CDS 64 179 61 215 PF04535.12 DUF588 Domain 6 111 150 46.2 3.9e-12 1 CL0396
Cotton_A_41033_CDS 33 344 33 345 PF00657.22 Lipase_GDSL Family 1 199 200 66.9 2.3e-18 1 CL0264
Cotton_A_12296_CDS 40 96 34 108 PF02002.17 TFIIE_alpha Family 15 71 105 31.4 1.3e-07 1 CL0123
Cotton_A_04544_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 54.4 1e-14 1 CL0123
Cotton_A_12531_CDS 390 433 390 433 PF00415.18 RCC1 Repeat 1 42 50 35.2 1.4e-08 1 CL0186
Cotton_A_12531_CDS 484 508 484 509 PF13540.6 RCC1_2 Repeat 1 25 30 29.3 5.4e-07 1 CL0186
Cotton_A_12531_CDS 546 595 546 595 PF00415.18 RCC1 Repeat 1 50 50 52.4 5.9e-14 1 CL0186
Cotton_A_12531_CDS 598 649 598 649 PF00415.18 RCC1 Repeat 1 50 50 63.3 2.4e-17 1 CL0186
Cotton_A_12531_CDS 652 714 652 714 PF00415.18 RCC1 Repeat 1 50 50 42.5 7.5e-11 1 CL0186
Cotton_A_06597_CDS 31 144 29 145 PF07732.15 Cu-oxidase_3 Domain 3 118 119 138.3 1.1e-40 1 CL0026
Cotton_A_06597_CDS 156 305 155 306 PF00394.22 Cu-oxidase Domain 2 158 159 151.5 1.9e-44 1 CL0026
Cotton_A_06597_CDS 407 539 406 540 PF07731.14 Cu-oxidase_2 Domain 2 136 137 139.9 4.1e-41 1 CL0026
Cotton_A_06728_CDS 37 147 37 148 PF13426.7 PAS_9 Domain 1 99 104 60.1 2.1e-16 1 CL0183
Cotton_A_06728_CDS 206 244 201 245 PF12937.7 F-box-like Domain 8 47 48 32.1 7.7e-08 1 CL0271
Cotton_A_06728_CDS 294 344 293 344 PF13418.6 Kelch_4 Repeat 2 49 49 43.6 2.1e-11 1 CL0186
Cotton_A_06728_CDS 358 405 356 406 PF13415.6 Kelch_3 Domain 3 48 49 41.7 9.9e-11 1 CL0186
Cotton_A_06728_CDS 451 502 451 502 PF07646.15 Kelch_2 Repeat 1 49 49 24.1 2.4e-05 1 CL0186
Cotton_A_06728_CDS 518 565 517 565 PF07646.15 Kelch_2 Repeat 2 49 49 22.5 7.5e-05 1 CL0186
Cotton_A_04820_CDS 157 187 156 191 PF05553.11 DUF761 Family 2 32 36 39.5 2.8e-10 1 No_clan
Cotton_A_15242_CDS 9 46 8 54 PF00646.33 F-box Domain 3 40 48 24.9 1.3e-05 1 CL0271
Cotton_A_15242_CDS 386 406 386 410 PF13516.6 LRR_6 Repeat 1 20 24 14.8 0.022 1 CL0022
Cotton_A_15242_CDS 469 489 466 489 PF13516.6 LRR_6 Repeat 5 24 24 9.0 1.6 1 CL0022
Cotton_A_24712_CDS 494 613 489 613 PF04852.12 DUF640 Family 7 126 126 183.4 1.6e-54 1 No_clan
Cotton_A_24712_CDS 665 708 655 708 PF02045.15 CBFB_NFYA Family 13 56 56 42.3 8.4e-11 1 No_clan
Cotton_A_04914_CDS 291 377 290 378 PF13837.6 Myb_DNA-bind_4 Domain 2 89 90 65.7 3.5e-18 1 CL0123
Cotton_A_18926_CDS 49 294 49 300 PF00251.20 Glyco_hydro_32N Domain 1 238 305 262.3 7.1e-78 1 CL0143
Cotton_A_14935_CDS 26 271 26 295 PF00561.20 Abhydrolase_1 Domain 1 236 257 83.8 1.4e-23 1 CL0028
Cotton_A_05602_CDS 125 146 122 147 PF00642.24 zf-CCCH Family 4 26 27 27.2 2.6e-06 1 CL0537
Cotton_A_19379_CDS 39 70 37 71 PF08263.12 LRRNT_2 Family 6 40 41 20.8 0.00035 1 No_clan
Cotton_A_19379_CDS 153 213 153 213 PF13855.6 LRR_8 Repeat 1 61 61 36.4 3.2e-09 1 CL0022
Cotton_A_19379_CDS 226 285 225 285 PF13855.6 LRR_8 Repeat 2 61 61 33.1 3.4e-08 1 CL0022
Cotton_A_19379_CDS 526 653 521 654 PF07714.17 Pkinase_Tyr Domain 6 130 259 47.8 1.1e-12 1 CL0016
Cotton_A_12081_CDS 136 345 136 346 PF03360.16 Glyco_transf_43 Family 1 203 205 207.8 1.5e-61 1 CL0110
Cotton_A_22468_CDS 21 104 21 104 PF01985.21 CRS1_YhbY Domain 1 84 84 45.1 8.3e-12 1 No_clan
Cotton_A_30749_CDS 12 219 12 220 PF00264.20 Tyrosinase Domain 1 221 222 128.2 5.4e-37 1 CL0205
Cotton_A_30749_CDS 227 277 227 278 PF12142.8 PPO1_DWL Domain 1 51 52 87.4 3.9e-25 1 No_clan
Cotton_A_30749_CDS 306 435 306 435 PF12143.8 PPO1_KFDV Domain 1 130 130 165.9 4.5e-49 1 CL0122
Cotton_A_31974_CDS 239 264 236 265 PF01535.20 PPR Family 5 30 31 14.1 0.041 1 CL0020
Cotton_A_31974_CDS 310 356 309 358 PF13041.6 PPR_2 Repeat 2 48 50 44.8 1e-11 1 CL0020
Cotton_A_31974_CDS 400 426 385 430 PF13812.6 PPR_3 Repeat 32 58 63 25.5 1e-05 1 CL0020
Cotton_A_06444_CDS 4 126 1 126 PF00006.25 ATP-synt_ab Domain 90 213 213 120.9 5.6e-35 1 CL0023
Cotton_A_40757_CDS 42 76 42 76 PF10559.9 Plug_translocon Domain 1 35 35 65.7 2.4e-18 1 No_clan
Cotton_A_40757_CDS 77 200 77 232 PF00344.20 SecY Family 1 115 306 102.0 3.6e-29 1 No_clan
Cotton_A_00059_CDS 264 329 262 331 PF04564.15 U-box Domain 5 70 73 51.8 6.8e-14 1 CL0229
Cotton_A_13891_CDS 7 70 7 71 PF04212.18 MIT Domain 2 64 65 77.3 6.6e-22 1 No_clan
Cotton_A_13891_CDS 171 300 170 300 PF00004.29 AAA Domain 2 132 132 148.3 1.6e-43 1 CL0023
Cotton_A_13891_CDS 370 434 370 434 PF09336.10 Vps4_C Domain 1 61 61 76.4 1.2e-21 1 CL0671
Cotton_A_16055_CDS 9 284 7 285 PF14576.6 SEO_N Family 3 286 287 351.1 3.8e-105 1 No_clan
Cotton_A_16055_CDS 442 670 441 671 PF14577.6 SEO_C Family 2 231 232 280.9 6.9e-84 1 No_clan
Cotton_A_03610_CDS 45 154 45 161 PF14226.6 DIOX_N Family 1 116 118 79.8 2.5e-22 1 CL0029
Cotton_A_03610_CDS 205 298 201 299 PF03171.20 2OG-FeII_Oxy Domain 5 99 101 77.5 8.9e-22 1 CL0029
Cotton_A_33297_CDS 24 167 24 176 PF06521.11 PAR1 Family 1 143 156 237.5 4.4e-71 1 No_clan
Cotton_A_24802_CDS 95 561 92 562 PF00939.19 Na_sulph_symp Family 4 471 472 423.4 1.3e-126 1 CL0182
Cotton_A_06949_CDS 17 115 7 116 PF02036.17 SCP2 Family 10 97 101 55.6 6e-15 1 CL0311
Cotton_A_37297_CDS 113 231 112 231 PF00583.25 Acetyltransf_1 Family 3 117 117 52.8 4e-14 1 CL0257
Cotton_A_30763_CDS 31 104 29 135 PF13947.6 GUB_WAK_bind Domain 3 73 106 33.7 4.9e-08 1 No_clan
Cotton_A_30763_CDS 170 257 155 258 PF14380.6 WAK_assoc Domain 16 103 104 70.5 1.6e-19 1 No_clan
Cotton_A_30763_CDS 361 629 359 631 PF00069.25 Pkinase Domain 3 260 264 175.6 1.2e-51 1 CL0016
Cotton_A_15923_CDS 88 236 87 236 PF01789.16 PsbP Domain 2 156 156 144.4 3e-42 1 CL0619
Cotton_A_13873_CDS 19 195 18 195 PF01397.21 Terpene_synth Domain 2 192 192 174.6 1.8e-51 1 No_clan
Cotton_A_13873_CDS 226 489 226 490 PF03936.16 Terpene_synth_C Domain 1 266 267 261.2 9.4e-78 1 CL0613
Cotton_A_21472_CDS 1 154 1 154 PF05686.12 Glyco_transf_90 Family 240 396 396 197.4 3.4e-58 1 CL0113
Cotton_A_21856_CDS 58 145 58 146 PF06749.12 DUF1218 Family 1 90 91 71.9 4.7e-20 1 No_clan
Cotton_A_14705_CDS 133 463 133 465 PF01501.20 Glyco_transf_8 Family 1 254 256 283.4 1.7e-84 1 CL0110
Cotton_A_18075_CDS 11 92 11 92 PF01198.19 Ribosomal_L31e Family 1 82 82 145.6 3.8e-43 1 No_clan
Cotton_A_37673_CDS 45 152 38 181 PF01490.18 Aa_trans Family 8 113 409 101.6 3.9e-29 1 CL0062
Cotton_A_21921_CDS 26 92 10 106 PF14368.6 LTP_2 Family 18 83 97 22.5 8.8e-05 1 CL0482
Cotton_A_17043_CDS 14 74 7 75 PF00004.29 AAA Domain 69 131 132 42.6 7.1e-11 1 CL0023
Cotton_A_17043_CDS 161 213 151 215 PF13537.6 GATase_7 Domain 67 121 123 32.1 9.1e-08 1 CL0052
Cotton_A_25354_CDS 113 187 112 188 PF03061.22 4HBT Domain 2 78 79 29.5 7e-07 1 CL0050
Cotton_A_18127_CDS 37 160 36 196 PF00141.23 peroxidase Domain 2 123 229 111.6 4.6e-32 1 CL0617
Cotton_A_18127_CDS 150 208 134 209 PF06364.12 DUF1068 Family 109 167 168 79.9 1.9e-22 1 No_clan
Cotton_A_26135_CDS 122 280 121 280 PF04678.13 MCU Family 2 176 176 175.8 8.2e-52 1 No_clan
Cotton_A_25799_CDS 133 177 129 181 PF02791.17 DDT Family 7 55 60 27.8 2.3e-06 1 No_clan
Cotton_A_25799_CDS 232 262 223 262 PF15612.6 WHIM1 Family 16 46 46 19.9 0.0004 1 No_clan
Cotton_A_09527_CDS 49 166 49 167 PF13537.6 GATase_7 Domain 1 122 123 131.5 1.5e-38 1 CL0052
Cotton_A_09527_CDS 211 361 210 363 PF00733.21 Asn_synthase Domain 2 143 355 195.2 2.5e-57 1 CL0039
Cotton_A_01287_CDS 114 282 114 286 PF01202.22 SKI Domain 1 154 158 132.9 1e-38 1 CL0023
Cotton_A_15391_CDS 80 217 80 234 PF07859.13 Abhydrolase_3 Domain 1 120 211 128.0 4.4e-37 1 CL0028
Cotton_A_00114_CDS 44 235 43 238 PF00149.28 Metallophos Domain 2 201 204 128.9 3.4e-37 1 CL0163
Cotton_A_28925_CDS 190 315 189 315 PF04037.13 DUF382 Family 2 127 127 200.4 8.9e-60 1 No_clan
Cotton_A_28925_CDS 324 369 324 369 PF04046.16 PSP Family 1 46 46 77.7 4.4e-22 1 No_clan
Cotton_A_07074_CDS 37 112 34 115 PF02298.17 Cu_bind_like Domain 4 81 84 84.3 4.5e-24 1 CL0026
Cotton_A_07172_CDS 109 192 109 198 PF12796.7 Ank_2 Repeat 1 67 83 29.6 7.7e-07 1 CL0465
Cotton_A_07172_CDS 257 371 253 383 PF13962.6 PGG Domain 5 101 116 47.4 1.4e-12 1 No_clan
Cotton_A_29331_CDS 101 159 101 159 PF01632.19 Ribosomal_L35p Family 2 60 61 54.7 1.1e-14 1 No_clan
Cotton_A_19344_CDS 278 346 278 348 PF00076.22 RRM_1 Domain 1 68 70 64.7 5.1e-18 1 CL0221
Cotton_A_19344_CDS 358 422 358 430 PF00076.22 RRM_1 Domain 1 61 70 26.8 3.5e-06 1 CL0221
Cotton_A_19344_CDS 456 522 456 524 PF00076.22 RRM_1 Domain 1 66 70 44.6 9.5e-12 1 CL0221
Cotton_A_24402_CDS 19 400 8 404 PF00854.21 PTR2 Family 14 363 395 264.4 1.5e-78 1 CL0015
Cotton_A_20567_CDS 31 204 29 205 PF05241.12 EBP Family 3 177 178 180.8 1.7e-53 1 No_clan
Cotton_A_02587_CDS 21 87 21 88 PF00076.22 RRM_1 Domain 1 69 70 61.1 6.8e-17 1 CL0221
Cotton_A_20242_CDS 30 56 30 57 PF05678.14 VQ Motif 1 27 28 48.0 6.2e-13 1 No_clan
Cotton_A_16342_CDS 4 725 4 725 PF06075.12 DUF936 Family 1 692 692 790.4 2.2e-237 1 No_clan
Cotton_A_15928_CDS 22 104 8 105 PF13456.6 RVT_3 Domain 15 101 124 27.2 2.6e-06 1 CL0219
Cotton_A_12463_CDS 57 112 56 113 PF08207.12 EFP_N Domain 2 57 58 88.2 2.6e-25 1 CL0107
Cotton_A_12463_CDS 124 174 121 174 PF01132.20 EFP Domain 4 54 54 72.9 1.5e-20 1 CL0021
Cotton_A_12463_CDS 182 237 182 237 PF09285.11 Elong-fact-P_C Domain 1 56 56 98.4 1.3e-28 1 CL0021
Cotton_A_25726_CDS 29 105 29 106 PF14569.6 zf-UDP Domain 1 77 78 138.9 4.5e-41 1 CL0229
Cotton_A_25726_CDS 367 1083 367 1089 PF03552.14 Cellulose_synt Family 1 714 722 1352.0 0 1 CL0110
Cotton_A_04994_CDS 382 417 380 418 PF00400.32 WD40 Repeat 3 37 38 26.4 8.6e-06 1 CL0186
Cotton_A_04994_CDS 510 541 505 542 PF00400.32 WD40 Repeat 6 37 38 18.5 0.0027 1 CL0186
Cotton_A_05729_CDS 270 306 244 390 PF01293.20 PEPCK_ATP Family 321 357 465 30.9 1.2e-07 1 CL0374
Cotton_A_06029_CDS 220 251 219 252 PF12854.7 PPR_1 Repeat 2 33 34 30.9 1.5e-07 1 CL0020
Cotton_A_06029_CDS 262 291 262 291 PF01535.20 PPR Family 2 31 31 22.8 6.9e-05 1 CL0020
Cotton_A_06029_CDS 296 325 296 326 PF01535.20 PPR Family 1 30 31 17.4 0.0038 1 CL0020
Cotton_A_06029_CDS 328 376 328 377 PF13041.6 PPR_2 Repeat 1 49 50 37.2 2.4e-09 1 CL0020
Cotton_A_06029_CDS 397 443 395 444 PF13041.6 PPR_2 Repeat 3 49 50 45.7 5.6e-12 1 CL0020
Cotton_A_06029_CDS 501 549 500 549 PF13041.6 PPR_2 Repeat 2 50 50 51.8 6.8e-14 1 CL0020
Cotton_A_09614_CDS 1 109 1 109 PF03087.14 DUF241 Family 126 234 234 90.4 1.5e-25 1 CL0133
Cotton_A_17684_CDS 76 101 74 101 PF05678.14 VQ Motif 3 28 28 45.0 5.2e-12 1 No_clan
Cotton_A_29409_CDS 151 194 150 194 PF13639.6 zf-RING_2 Domain 2 44 44 51.6 8.7e-14 1 CL0229
Cotton_A_32491_CDS 5 117 1 118 PF00125.24 Histone Domain 16 130 131 81.1 9e-23 1 CL0012
Cotton_A_14012_CDS 484 611 481 642 PF12146.8 Hydrolase_4 Family 4 132 239 50.9 1.2e-13 1 CL0028
Cotton_A_13385_CDS 62 425 62 425 PF12819.7 Malectin_like Domain 1 336 336 143.1 1.2e-41 1 CL0202
Cotton_A_13385_CDS 546 750 543 813 PF07714.17 Pkinase_Tyr Domain 4 211 259 158.2 2.3e-46 1 CL0016
Cotton_A_22752_CDS 78 263 65 290 PF00696.28 AA_kinase Family 20 200 241 25.8 6.8e-06 1 No_clan
Cotton_A_22752_CDS 442 520 420 520 PF00583.25 Acetyltransf_1 Family 33 117 117 38.9 8.2e-10 1 CL0257
Cotton_A_28483_CDS 8 204 7 211 PF00702.26 Hydrolase Domain 2 203 210 59.8 4.4e-16 1 CL0137
Cotton_A_22891_CDS 1 73 1 74 PF03760.15 LEA_1 Family 1 70 71 43.9 2.7e-11 1 No_clan
Cotton_A_08761_CDS 157 230 157 231 PF03110.14 SBP Domain 1 74 75 99.0 1.4e-28 1 No_clan
Cotton_A_38383_CDS 41 110 41 111 PF00076.22 RRM_1 Domain 1 69 70 65.5 2.8e-18 1 CL0221
Cotton_A_17885_CDS 8 351 6 355 PF01494.19 FAD_binding_3 Family 3 341 349 103.9 1e-29 1 CL0063
Cotton_A_20008_CDS 233 280 231 280 PF01084.20 Ribosomal_S18 Family 5 52 52 60.0 1.9e-16 1 CL0123
Cotton_A_00834_CDS 89 364 84 364 PF07714.17 Pkinase_Tyr Domain 6 259 259 165.9 1e-48 1 CL0016
Cotton_A_32395_CDS 146 311 146 311 PF14543.6 TAXi_N Domain 1 178 178 186.5 4.9e-55 1 CL0129
Cotton_A_32395_CDS 332 483 332 484 PF14541.6 TAXi_C Domain 1 160 161 128.6 1.8e-37 1 CL0129
Cotton_A_35598_CDS 62 133 62 133 PF04640.14 PLATZ Family 1 82 82 87.0 1e-24 1 No_clan
Cotton_A_32271_CDS 23 128 22 129 PF13947.6 GUB_WAK_bind Domain 2 105 106 40.2 4.4e-10 1 No_clan
Cotton_A_32271_CDS 316 359 315 359 PF13639.6 zf-RING_2 Domain 2 44 44 49.3 4.6e-13 1 CL0229
Cotton_A_22271_CDS 153 234 147 241 PF00931.22 NB-ARC Domain 93 173 252 55.9 3.6e-15 1 CL0023
Cotton_A_23979_CDS 56 122 56 123 PF00538.19 Linker_histone Domain 1 73 74 67.2 1.3e-18 1 CL0123
Cotton_A_32161_CDS 66 368 63 394 PF00150.18 Cellulase Domain 4 264 281 57.7 1.2e-15 1 CL0058
Cotton_A_25662_CDS 138 470 138 470 PF00657.22 Lipase_GDSL Family 1 200 200 28.0 1.9e-06 1 CL0264
Cotton_A_17856_CDS 23 62 22 63 PF08263.12 LRRNT_2 Family 2 40 41 49.5 3.9e-13 1 No_clan
Cotton_A_17856_CDS 215 234 215 234 PF00560.33 LRR_1 Repeat 4 23 23 10.3 0.92 1 CL0022
Cotton_A_17856_CDS 394 679 390 684 PF00069.25 Pkinase Domain 7 256 264 112.8 1.7e-32 1 CL0016
Cotton_A_31142_CDS 54 214 53 215 PF00685.27 Sulfotransfer_1 Domain 2 174 267 121.1 5.8e-35 1 CL0023
Cotton_A_08826_CDS 155 350 154 350 PF13532.6 2OG-FeII_Oxy_2 Domain 2 196 196 50.8 2.2e-13 1 CL0029
Cotton_A_11515_CDS 229 355 229 356 PF00134.23 Cyclin_N Domain 1 126 127 150.3 2.1e-44 1 CL0065
Cotton_A_11515_CDS 358 473 358 477 PF02984.19 Cyclin_C Domain 1 111 119 110.8 4.1e-32 1 CL0065
Cotton_A_14313_CDS 100 192 78 193 PF00782.20 DSPc Domain 39 132 133 88.2 3.9e-25 1 CL0031
Cotton_A_03380_CDS 23 315 22 318 PF02374.15 ArsA_ATPase Domain 2 302 305 332.9 1.7e-99 1 CL0023
Cotton_A_02480_CDS 3 96 3 96 PF06127.11 DUF962 Family 1 95 95 101.3 2.3e-29 1 No_clan
Cotton_A_08633_CDS 15 220 15 221 PF01734.22 Patatin Family 1 203 204 74.6 1.2e-20 1 CL0323
Cotton_A_37423_CDS 67 294 67 295 PF01269.17 Fibrillarin Domain 1 225 226 369.1 5.6e-111 1 CL0063
Cotton_A_20831_CDS 48 227 48 228 PF00350.23 Dynamin_N Domain 1 167 168 184.4 1.7e-54 1 CL0023
Cotton_A_20831_CDS 237 525 237 527 PF01031.20 Dynamin_M Family 1 283 285 338.4 3.1e-101 1 No_clan
Cotton_A_20831_CDS 655 744 654 745 PF02212.18 GED Family 2 91 92 94.7 2.8e-27 1 No_clan
Cotton_A_22136_CDS 7 108 6 110 PF00466.20 Ribosomal_L10 Family 2 98 100 72.0 3.6e-20 1 No_clan
Cotton_A_22136_CDS 114 183 114 183 PF17777.1 RL10P_insert Domain 1 71 71 72.6 1.9e-20 1 No_clan
Cotton_A_22136_CDS 234 320 234 320 PF00428.19 Ribosomal_60s Family 1 88 88 78.0 6.4e-22 1 No_clan
Cotton_A_16153_CDS 34 275 34 277 PF01988.19 VIT1 Family 1 213 215 174.9 2.1e-51 1 No_clan
Cotton_A_10931_CDS 164 267 163 267 PF16041.5 DUF4793 Family 2 108 108 87.3 7e-25 1 No_clan
Cotton_A_10931_CDS 333 382 332 382 PF13920.6 zf-C3HC4_3 Domain 2 50 50 54.9 5.7e-15 1 CL0229
Cotton_A_04451_CDS 44 561 43 561 PF01204.18 Trehalase Domain 2 512 512 572.6 7.9e-172 1 CL0059
Cotton_A_00611_CDS 97 192 90 192 PF02519.14 Auxin_inducible Family 1 90 90 85.4 2.2e-24 1 No_clan
Cotton_A_11967_CDS 57 106 57 109 PF16320.5 Ribosomal_L12_N Domain 1 47 48 50.5 1.2e-13 1 No_clan
Cotton_A_11967_CDS 117 183 117 184 PF00542.19 Ribosomal_L12 Domain 1 66 67 85.4 2.4e-24 1 No_clan
Cotton_A_12341_CDS 20 336 20 338 PF00332.18 Glyco_hydro_17 Domain 1 311 313 286.8 2.6e-85 1 CL0058
Cotton_A_33311_CDS 122 240 121 240 PF16983.5 MFS_MOT1 Family 2 111 111 106.5 9.4e-31 1 CL0062
Cotton_A_04171_CDS 1851 1899 1850 1899 PF13639.6 zf-RING_2 Domain 2 44 44 29.9 5e-07 1 CL0229
Cotton_A_16931_CDS 18 81 16 82 PF00690.26 Cation_ATPase_N Domain 3 68 69 51.8 4.9e-14 1 No_clan
Cotton_A_16931_CDS 131 308 129 309 PF00122.20 E1-E2_ATPase Family 4 180 181 164.2 2.2e-48 1 No_clan
Cotton_A_16931_CDS 325 602 325 602 PF00702.26 Hydrolase Domain 1 210 210 69.6 4.5e-19 1 CL0137
Cotton_A_35503_CDS 100 160 100 160 PF13855.6 LRR_8 Repeat 1 61 61 37.1 2e-09 1 CL0022
Cotton_A_35503_CDS 226 408 224 408 PF11721.8 Malectin Domain 3 165 165 140.8 4.1e-41 1 CL0202
Cotton_A_35503_CDS 492 756 490 759 PF00069.25 Pkinase Domain 4 260 264 180.0 5.6e-53 1 CL0016
Cotton_A_34046_CDS 79 118 72 118 PF13855.6 LRR_8 Repeat 22 61 61 35.5 6.2e-09 1 CL0022
Cotton_A_16750_CDS 93 270 93 271 PF00719.19 Pyrophosphatase Domain 1 159 160 154.6 1.9e-45 1 No_clan
Cotton_A_05172_CDS 143 209 142 209 PF13802.6 Gal_mutarotas_2 Domain 2 66 66 53.6 2.1e-14 1 CL0103
Cotton_A_05172_CDS 234 643 228 661 PF01055.26 Glyco_hydro_31 Family 7 409 440 438.7 2.9e-131 1 CL0058
Cotton_A_05172_CDS 656 716 654 718 PF17137.4 DUF5110 Family 7 69 72 34.6 1.7e-08 1 No_clan
Cotton_A_12797_CDS 715 760 714 760 PF07496.15 zf-CW Domain 2 48 48 45.9 4.1e-12 1 No_clan
Cotton_A_12797_CDS 837 872 835 872 PF17907.1 AWS Domain 4 39 39 55.4 4.5e-15 1 No_clan
Cotton_A_12797_CDS 886 992 886 992 PF00856.28 SET Family 1 169 169 68.7 7.7e-19 1 No_clan
Cotton_A_09961_CDS 28 69 27 69 PF03790.13 KNOX1 Family 2 43 43 60.5 9.4e-17 1 No_clan
Cotton_A_09961_CDS 86 137 86 137 PF03791.13 KNOX2 Family 1 48 48 65.7 1.9e-18 1 No_clan
Cotton_A_09961_CDS 234 273 234 273 PF05920.11 Homeobox_KN Family 1 40 40 63.7 1e-17 1 CL0123
Cotton_A_33375_CDS 124 312 111 322 PF04055.21 Radical_SAM Domain 9 158 167 65.1 9.9e-18 1 CL0036
Cotton_A_33375_CDS 330 408 329 410 PF16199.5 Radical_SAM_C Family 2 80 82 108.8 1e-31 1 No_clan
Cotton_A_33375_CDS 416 552 415 552 PF00583.25 Acetyltransf_1 Family 2 117 117 42.8 5.2e-11 1 CL0257
Cotton_A_16281_CDS 212 260 212 261 PF13041.6 PPR_2 Repeat 1 49 50 44.1 1.7e-11 1 CL0020
Cotton_A_16281_CDS 289 309 286 313 PF01535.20 PPR Family 5 25 31 9.9 0.91 1 CL0020
Cotton_A_16281_CDS 321 350 320 350 PF01535.20 PPR Family 2 31 31 31.7 1e-07 1 CL0020
Cotton_A_16281_CDS 352 400 352 401 PF13041.6 PPR_2 Repeat 1 49 50 35.1 1.1e-08 1 CL0020
Cotton_A_04870_CDS 617 663 617 663 PF07496.15 zf-CW Domain 1 48 48 58.9 3.5e-16 1 No_clan
Cotton_A_14173_CDS 106 283 106 284 PF02194.15 PXA Family 1 181 182 132.1 2.1e-38 1 No_clan
Cotton_A_14173_CDS 690 791 684 792 PF00787.24 PX Domain 9 112 113 59.2 3.4e-16 1 No_clan
Cotton_A_14173_CDS 958 1097 958 1098 PF08628.12 Nexin_C Family 1 111 112 108.7 2.3e-31 1 No_clan
Cotton_A_31965_CDS 51 78 51 91 PF00467.29 KOW Family 1 28 32 26.1 5.7e-06 1 CL0107
Cotton_A_36194_CDS 52 121 51 124 PF07727.14 RVT_2 Family 2 70 242 52.4 5.3e-14 1 CL0027
Cotton_A_13058_CDS 45 356 44 356 PF01180.21 DHO_dh Domain 2 295 295 108.5 3.5e-31 1 CL0036
Cotton_A_35308_CDS 73 266 73 266 PF03798.16 TRAM_LAG1_CLN8 Domain 1 198 198 102.3 2.7e-29 1 No_clan
Cotton_A_35938_CDS 64 214 63 214 PF00190.22 Cupin_1 Domain 2 151 151 176.9 1.9e-52 1 CL0029
Cotton_A_15275_CDS 32 242 32 242 PF00314.17 Thaumatin Domain 1 214 214 261.6 5e-78 1 CL0293
Cotton_A_01381_CDS 2 57 1 57 PF08069.12 Ribosomal_S13_N Domain 5 60 60 91.7 2.2e-26 1 No_clan
Cotton_A_01381_CDS 71 142 67 145 PF00312.22 Ribosomal_S15 Domain 4 77 81 55.8 4e-15 1 CL0600
Cotton_A_05343_CDS 15 133 11 152 PF13968.6 DUF4220 Family 70 192 347 47.2 2e-12 1 No_clan
Cotton_A_02705_CDS 31 75 30 76 PF00956.18 NAP Family 3 47 270 28.7 7.1e-07 1 No_clan
Cotton_A_02705_CDS 75 222 74 223 PF00956.18 NAP Family 86 269 270 106.4 1.4e-30 1 No_clan
Cotton_A_28053_CDS 18 41 14 42 PF00173.28 Cyt-b5 Domain 21 44 74 24.4 2.3e-05 1 No_clan
Cotton_A_28053_CDS 79 131 78 132 PF14416.6 PMR5N Domain 2 52 53 78.4 3.6e-22 1 No_clan
Cotton_A_18249_CDS 11 322 11 322 PF00332.18 Glyco_hydro_17 Domain 1 313 313 363.4 1.2e-108 1 CL0058
Cotton_A_09071_CDS 36 170 36 171 PF02789.17 Peptidase_M17_N Domain 1 125 126 79.7 1.6e-22 1 CL0223
Cotton_A_09071_CDS 207 513 205 513 PF00883.21 Peptidase_M17 Domain 3 311 311 379.8 9.5e-114 1 CL0035
Cotton_A_12751_CDS 9 227 3 227 PF00195.19 Chal_sti_synt_N Domain 7 225 225 328.7 1.5e-98 1 CL0046
Cotton_A_12751_CDS 238 387 238 388 PF02797.15 Chal_sti_synt_C Domain 1 150 151 188.2 8.4e-56 1 CL0046
Cotton_A_02862_CDS 6 69 1 70 PF13966.6 zf-RVT Domain 18 83 85 56.5 3.5e-15 1 No_clan
Cotton_A_15583_CDS 71 152 71 192 PF00856.28 SET Family 1 144 169 37.6 2.7e-09 1 No_clan
Cotton_A_31314_CDS 108 191 106 192 PF13167.6 GTP-bdg_N Family 18 88 89 42.7 6.5e-11 1 No_clan
Cotton_A_31314_CDS 194 290 194 290 PF16360.5 GTP-bdg_M Family 1 79 79 67.5 1.2e-18 1 No_clan
Cotton_A_31314_CDS 304 425 303 425 PF01926.23 MMR_HSR1 Family 2 114 114 59.3 3.4e-16 1 CL0023
Cotton_A_19440_CDS 41 287 32 289 PF13360.6 PQQ_2 Domain 17 235 237 56.8 2.4e-15 1 CL0186
Cotton_A_19440_CDS 346 481 343 495 PF13360.6 PQQ_2 Domain 4 116 237 36.9 2.8e-09 1 CL0186
Cotton_A_12327_CDS 31 405 31 406 PF12819.7 Malectin_like Domain 1 335 336 147.1 7e-43 1 CL0202
Cotton_A_12327_CDS 526 788 521 793 PF07714.17 Pkinase_Tyr Domain 6 254 259 161.9 1.7e-47 1 CL0016
Cotton_A_10023_CDS 184 229 183 232 PF00385.24 Chromo Domain 2 45 54 30.4 2.6e-07 1 CL0049
Cotton_A_16722_CDS 57 195 56 195 PF15370.6 DUF4598 Family 2 111 111 70.8 1.2e-19 1 No_clan
Cotton_A_27867_CDS 8 163 8 163 PF08694.11 UFC1 Domain 1 155 155 279.2 6.7e-84 1 CL0208
Cotton_A_29208_CDS 149 310 145 311 PF00650.20 CRAL_TRIO Domain 7 158 159 81.2 6.4e-23 1 CL0512
Cotton_A_11911_CDS 27 51 23 52 PF01535.20 PPR Family 6 30 31 9.8 0.97 1 CL0020
Cotton_A_11911_CDS 89 136 89 137 PF13041.6 PPR_2 Repeat 1 48 50 49.2 4.3e-13 1 CL0020
Cotton_A_11911_CDS 157 188 156 189 PF12854.7 PPR_1 Repeat 2 33 34 30.4 2.3e-07 1 CL0020
Cotton_A_11911_CDS 195 244 195 244 PF13041.6 PPR_2 Repeat 1 50 50 44.5 1.3e-11 1 CL0020
Cotton_A_11911_CDS 300 348 300 349 PF13041.6 PPR_2 Repeat 1 49 50 42.8 4.4e-11 1 CL0020
Cotton_A_11911_CDS 370 417 370 419 PF13041.6 PPR_2 Repeat 1 48 50 50.8 1.4e-13 1 CL0020
Cotton_A_24810_CDS 5 116 2 118 PF00153.27 Mito_carr Family 8 95 97 62.2 3.4e-17 1 No_clan
Cotton_A_24810_CDS 122 216 120 218 PF00153.27 Mito_carr Family 3 95 97 65.3 3.4e-18 1 No_clan
Cotton_A_24810_CDS 225 314 222 316 PF00153.27 Mito_carr Family 6 94 97 68.9 2.7e-19 1 No_clan
Cotton_A_03064_CDS 49 84 48 85 PF02845.16 CUE Family 5 40 42 26.9 2.9e-06 1 CL0214
Cotton_A_05311_CDS 202 267 201 269 PF01363.21 FYVE Domain 2 66 68 56.2 2.8e-15 1 CL0390
Cotton_A_05311_CDS 385 509 384 511 PF04366.12 Ysc84 Family 2 126 128 123.0 5.9e-36 1 No_clan
Cotton_A_07415_CDS 83 161 76 164 PF00686.19 CBM_20 Family 9 93 97 54.7 7.2e-15 1 CL0369
Cotton_A_29573_CDS 59 118 41 119 PF03105.19 SPX Domain 324 383 384 39.3 7.1e-10 1 No_clan
Cotton_A_20447_CDS 16 450 15 453 PF02458.15 Transferase Family 2 429 434 237.3 2.5e-70 1 CL0149
Cotton_A_01998_CDS 36 87 32 106 PF00314.17 Thaumatin Domain 68 116 214 56.4 3e-15 1 CL0293
Cotton_A_10713_CDS 2 42 1 44 PF00646.33 F-box Domain 6 46 48 20.8 0.00026 1 CL0271
Cotton_A_10713_CDS 91 257 91 257 PF14299.6 PP2 Family 1 146 146 168.8 7.3e-50 1 No_clan
Cotton_A_08364_CDS 118 212 118 213 PF08241.12 Methyltransf_11 Domain 1 95 96 64.3 1.2e-17 1 CL0063
Cotton_A_31946_CDS 78 176 77 177 PF01453.24 B_lectin Domain 2 104 105 105.3 2.2e-30 1 No_clan
Cotton_A_31946_CDS 209 318 209 320 PF00954.20 S_locus_glycop Domain 1 109 111 85.1 4.6e-24 1 No_clan
Cotton_A_31946_CDS 341 411 337 413 PF08276.11 PAN_2 Domain 3 65 67 39.2 5.5e-10 1 CL0168
Cotton_A_31946_CDS 534 781 531 781 PF07714.17 Pkinase_Tyr Domain 4 259 259 158.9 1.4e-46 1 CL0016
Cotton_A_31946_CDS 783 825 783 825 PF11883.8 DUF3403 Family 1 46 46 31.1 1.9e-07 1 No_clan
Cotton_A_16754_CDS 2 36 1 43 PF12937.7 F-box-like Domain 2 35 48 27.0 3.1e-06 1 CL0271
Cotton_A_09571_CDS 107 246 101 250 PF00069.25 Pkinase Domain 22 158 264 105.0 4.2e-30 1 CL0016
Cotton_A_09571_CDS 312 415 294 415 PF00069.25 Pkinase Domain 154 264 264 71.4 7.4e-20 1 CL0016
Cotton_A_04155_CDS 29 99 19 103 PF13966.6 zf-RVT Domain 13 79 85 33.5 5.1e-08 1 No_clan
Cotton_A_19030_CDS 319 343 319 343 PF07557.11 Shugoshin_C Family 1 24 25 39.6 3.3e-10 1 No_clan
Cotton_A_19738_CDS 43 284 43 285 PF09749.9 HVSL Family 1 237 238 197.1 2.9e-58 1 CL0247
Cotton_A_16302_CDS 159 466 159 467 PF01546.28 Peptidase_M20 Family 1 206 207 101.6 4.5e-29 1 CL0035
Cotton_A_16302_CDS 264 357 258 360 PF07687.14 M20_dimer Domain 9 104 109 22.1 0.00011 1 No_clan
Cotton_A_39178_CDS 53 214 53 214 PF03641.14 Lysine_decarbox Family 1 132 132 142.8 6.3e-42 1 CL0349
Cotton_A_05012_CDS 200 270 195 278 PF01078.21 Mg_chelatase Domain 88 158 207 30.4 2.4e-07 1 CL0023
Cotton_A_05012_CDS 350 408 348 416 PF17863.1 AAA_lid_2 Domain 4 62 73 71.5 3.9e-20 1 CL0671
Cotton_A_09314_CDS 1 135 1 135 PF07123.12 PsbW Family 1 132 132 168.8 5.6e-50 1 No_clan
Cotton_A_05935_CDS 72 151 72 151 PF03330.18 DPBB_1 Domain 1 83 83 84.5 4.6e-24 1 CL0199
Cotton_A_05935_CDS 162 239 162 239 PF01357.21 Pollen_allerg_1 Domain 1 80 80 100.0 5.6e-29 1 CL0159
Cotton_A_00254_CDS 278 444 278 450 PF07714.17 Pkinase_Tyr Domain 1 176 259 156.4 8.1e-46 1 CL0016
Cotton_A_00254_CDS 445 499 444 500 PF07714.17 Pkinase_Tyr Domain 205 258 259 26.0 5e-06 1 CL0016
Cotton_A_21242_CDS 108 245 96 247 PF13328.6 HD_4 Family 13 154 156 79.5 2.2e-22 1 CL0237
Cotton_A_21242_CDS 312 434 312 437 PF04607.17 RelA_SpoT Family 1 114 117 105.8 1.5e-30 1 CL0260
Cotton_A_21242_CDS 478 530 477 534 PF13499.6 EF-hand_7 Domain 6 66 71 39.7 4.8e-10 1 CL0220
Cotton_A_37340_CDS 3 53 3 72 PF13975.6 gag-asp_proteas Domain 1 53 92 36.5 5.3e-09 1 CL0129
Cotton_A_00776_CDS 239 403 238 403 PF13359.6 DDE_Tnp_4 Domain 2 158 158 68.1 6.8e-19 1 CL0219
Cotton_A_23878_CDS 153 260 153 325 PF13238.6 AAA_18 Domain 1 95 130 32.4 1.1e-07 1 CL0023
Cotton_A_30453_CDS 139 193 130 195 PF04389.17 Peptidase_M28 Family 7 66 198 33.0 4.5e-08 1 CL0035
Cotton_A_18815_CDS 1 209 1 209 PF00016.20 RuBisCO_large Domain 59 269 299 254.4 1.2e-75 1 No_clan
Cotton_A_24620_CDS 89 469 89 471 PF00916.20 Sulfate_transp Family 1 378 380 424.7 2.7e-127 1 CL0062
Cotton_A_24620_CDS 522 641 522 641 PF01740.21 STAS Domain 1 117 117 85.9 1.4e-24 1 CL0502
Cotton_A_30703_CDS 204 246 203 246 PF13639.6 zf-RING_2 Domain 2 44 44 41.4 1.3e-10 1 CL0229
Cotton_A_22381_CDS 105 148 104 149 PF13639.6 zf-RING_2 Domain 2 43 44 40.7 2.2e-10 1 CL0229
Cotton_A_32111_CDS 128 247 128 247 PF13640.6 2OG-FeII_Oxy_3 Domain 1 96 96 77.2 1.4e-21 1 CL0029
Cotton_A_32111_CDS 260 301 260 301 PF01549.24 ShK Domain 1 38 38 22.4 0.00013 1 CL0213
Cotton_A_34086_CDS 44 127 44 129 PF01627.23 Hpt Family 1 83 85 32.9 5.9e-08 1 No_clan
Cotton_A_16380_CDS 142 358 140 369 PF00931.22 NB-ARC Domain 3 236 252 93.7 1e-26 1 CL0023
Cotton_A_02122_CDS 27 104 26 104 PF18290.1 Nudix_hydro Domain 2 80 80 99.6 7.3e-29 1 No_clan
Cotton_A_02122_CDS 117 238 116 243 PF00293.28 NUDIX Domain 2 124 131 80.2 1.3e-22 1 CL0261
Cotton_A_04689_CDS 74 234 74 234 PF01554.18 MatE Family 1 161 161 121.1 3.5e-35 1 CL0222
Cotton_A_04689_CDS 296 456 295 458 PF01554.18 MatE Family 2 159 161 106.8 8.2e-31 1 CL0222
Cotton_A_36425_CDS 39 186 37 186 PF04535.12 DUF588 Domain 3 150 150 149.6 5.5e-44 1 CL0396
Cotton_A_23580_CDS 111 209 110 209 PF03171.20 2OG-FeII_Oxy Domain 2 101 101 100.5 5.9e-29 1 CL0029
Cotton_A_13327_CDS 88 503 88 513 PF00854.21 PTR2 Family 1 387 395 224.0 2.7e-66 1 CL0015
Cotton_A_40638_CDS 9 368 2 369 PF05633.11 BPS1 Family 33 387 388 540.5 2.3e-162 1 CL0133
Cotton_A_27379_CDS 85 163 85 172 PF12796.7 Ank_2 Repeat 1 74 83 32.4 1e-07 1 CL0465
Cotton_A_27379_CDS 285 332 269 337 PF12796.7 Ank_2 Repeat 35 80 83 27.5 3.4e-06 1 CL0465
Cotton_A_27379_CDS 345 393 343 394 PF13637.6 Ank_4 Repeat 5 54 55 25.9 1e-05 1 CL0465
Cotton_A_27379_CDS 446 506 427 508 PF12796.7 Ank_2 Repeat 28 81 83 28.0 2.4e-06 1 CL0465
Cotton_A_27379_CDS 549 618 549 627 PF12796.7 Ank_2 Repeat 1 60 83 44.1 2.4e-11 1 CL0465
Cotton_A_37727_CDS 48 239 47 242 PF00149.28 Metallophos Domain 2 201 204 124.5 7.9e-36 1 CL0163
Cotton_A_24267_CDS 55 267 54 268 PF01135.19 PCMT Family 2 209 210 286.9 9.1e-86 1 CL0063
Cotton_A_17677_CDS 99 141 97 141 PF13639.6 zf-RING_2 Domain 3 44 44 53.1 3e-14 1 CL0229
Cotton_A_34454_CDS 11 127 11 127 PF00763.23 THF_DHG_CYH Domain 1 116 116 138.1 1.5e-40 1 CL0603
Cotton_A_34454_CDS 130 295 130 297 PF02882.19 THF_DHG_CYH_C Domain 1 158 160 221.0 4.7e-66 1 CL0063
Cotton_A_16457_CDS 359 569 358 569 PF04042.16 DNA_pol_E_B Family 2 211 211 128.9 1.6e-37 1 CL0163
Cotton_A_06292_CDS 134 177 133 177 PF13639.6 zf-RING_2 Domain 2 44 44 51.7 7.9e-14 1 CL0229
Cotton_A_06750_CDS 39 135 36 160 PF01582.20 TIR Family 3 106 176 69.5 2.9e-19 1 CL0173
Cotton_A_01418_CDS 251 448 251 468 PF04577.14 DUF563 Family 1 186 209 68.0 1.2e-18 1 No_clan
Cotton_A_15229_CDS 29 72 28 72 PF08263.12 LRRNT_2 Family 2 41 41 25.8 9.6e-06 1 No_clan
Cotton_A_15229_CDS 127 141 125 147 PF13516.6 LRR_6 Repeat 4 18 24 11.7 0.21 1 CL0022
Cotton_A_12748_CDS 90 177 90 177 PF11942.8 Spt5_N Domain 1 99 99 50.3 3.6e-13 1 No_clan
Cotton_A_12748_CDS 183 264 183 264 PF03439.13 Spt5-NGN Family 1 84 84 86.5 8.3e-25 1 CL0439
Cotton_A_12748_CDS 479 506 479 521 PF00467.29 KOW Family 1 28 32 40.1 2.2e-10 1 CL0107
Cotton_A_12748_CDS 711 741 710 741 PF00467.29 KOW Family 2 32 32 23.1 5.1e-05 1 CL0107
Cotton_A_02592_CDS 25 151 25 160 PF00561.20 Abhydrolase_1 Domain 1 125 257 67.2 1.7e-18 1 CL0028
Cotton_A_30339_CDS 93 603 93 603 PF03141.16 Methyltransf_29 Family 1 506 506 768.9 2e-231 1 CL0063
Cotton_A_20553_CDS 51 149 51 150 PF01230.23 HIT Domain 1 97 98 100.8 5.5e-29 1 CL0265
Cotton_A_25819_CDS 44 448 42 453 PF01490.18 Aa_trans Family 3 403 409 200.4 4e-59 1 CL0062
Cotton_A_00642_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 53.7 1.7e-14 1 CL0123
Cotton_A_00642_CDS 67 111 67 112 PF00249.31 Myb_DNA-binding Domain 1 45 46 59.6 2.5e-16 1 CL0123
Cotton_A_26388_CDS 69 184 69 267 PF00535.26 Glycos_transf_2 Family 1 107 170 81.5 6e-23 1 CL0110
Cotton_A_08964_CDS 66 279 66 280 PF01379.20 Porphobil_deam Domain 1 203 204 250.1 1.3e-74 1 CL0177
Cotton_A_08964_CDS 292 364 291 365 PF03900.15 Porphobil_deamC Domain 2 74 75 54.4 1.2e-14 1 No_clan
Cotton_A_30426_CDS 8 245 7 246 PF05875.12 Ceramidase Family 2 262 263 186.8 4.7e-55 1 CL0192
Cotton_A_08617_CDS 38 96 38 98 PF13921.6 Myb_DNA-bind_6 Domain 1 58 60 63.4 1.7e-17 1 CL0123
Cotton_A_17919_CDS 25 222 22 222 PF05757.11 PsbQ Family 4 200 200 185.3 1.1e-54 1 No_clan
Cotton_A_11919_CDS 117 444 116 444 PF00443.29 UCH Family 2 257 257 164.7 2.6e-48 1 CL0125
Cotton_A_20315_CDS 49 646 49 647 PF03169.15 OPT Family 1 615 616 442.4 3e-132 1 No_clan
Cotton_A_20211_CDS 22 79 21 84 PF00538.19 Linker_histone Domain 2 60 74 37.9 1.7e-09 1 CL0123
Cotton_A_20211_CDS 95 103 95 107 PF02178.19 AT_hook Motif 1 9 13 7.4 4.9 1 No_clan
Cotton_A_20211_CDS 117 125 117 129 PF02178.19 AT_hook Motif 1 9 13 9.1 1.3 1 No_clan
Cotton_A_20211_CDS 141 152 141 153 PF02178.19 AT_hook Motif 1 12 13 10.6 0.44 1 No_clan
Cotton_A_20211_CDS 166 174 166 175 PF02178.19 AT_hook Motif 1 9 13 10.2 0.6 1 No_clan
Cotton_A_35266_CDS 20 120 20 120 PF12776.7 Myb_DNA-bind_3 Domain 1 96 96 45.9 8.7e-12 1 CL0123
Cotton_A_04737_CDS 36 127 36 132 PF00234.22 Tryp_alpha_amyl Family 1 81 87 34.9 1.5e-08 1 CL0482
Cotton_A_03044_CDS 137 165 137 165 PF17123.5 zf-RING_11 Domain 1 29 29 41.5 8.2e-11 1 CL0229
Cotton_A_03044_CDS 192 260 192 260 PF16205.5 Ribosomal_S17_N Family 1 69 69 109.0 1.1e-31 1 No_clan
Cotton_A_03044_CDS 262 344 262 344 PF00366.20 Ribosomal_S17 Domain 1 68 68 72.6 2e-20 1 CL0021
Cotton_A_11665_CDS 155 202 152 203 PF12678.7 zf-rbx1 Domain 7 54 55 47.9 1.2e-12 1 CL0229
Cotton_A_16716_CDS 50 238 49 238 PF00033.19 Cytochrome_B Domain 2 189 189 276.8 8.5e-83 1 CL0328
Cotton_A_20247_CDS 96 494 93 523 PF11957.8 efThoc1 Family 5 464 489 329.7 2.8e-98 1 No_clan
Cotton_A_23143_CDS 10 405 9 410 PF01676.18 Metalloenzyme Family 2 212 248 81.3 7e-23 1 CL0088
Cotton_A_23143_CDS 46 220 45 220 PF10143.9 PhosphMutase Family 2 170 170 181.0 1.6e-53 1 No_clan
Cotton_A_12014_CDS 197 238 196 239 PF13639.6 zf-RING_2 Domain 2 43 44 43.5 2.9e-11 1 CL0229
Cotton_A_26091_CDS 56 94 56 94 PF04810.15 zf-Sec23_Sec24 Domain 1 39 39 54.4 9.1e-15 1 No_clan
Cotton_A_26091_CDS 132 399 131 399 PF04811.15 Sec23_trunk Domain 2 243 243 238.3 8.5e-71 1 CL0128
Cotton_A_26091_CDS 410 514 409 514 PF08033.12 Sec23_BS Domain 2 96 96 106.0 1.3e-30 1 No_clan
Cotton_A_26091_CDS 528 624 528 627 PF04815.15 Sec23_helical Domain 1 100 103 78.2 3.5e-22 1 No_clan
Cotton_A_26091_CDS 640 728 638 728 PF00626.22 Gelsolin Domain 3 76 76 55.6 3.7e-15 1 CL0092
Cotton_A_21143_CDS 108 153 108 169 PF13450.6 NAD_binding_8 Domain 1 40 68 25.3 1.3e-05 1 CL0063
Cotton_A_21143_CDS 528 630 528 630 PF05187.13 ETF_QO Family 1 104 104 153.6 1.5e-45 1 CL0344
Cotton_A_05756_CDS 57 150 56 151 PF06749.12 DUF1218 Family 2 90 91 80.2 1.3e-22 1 No_clan
Cotton_A_02316_CDS 4 94 4 106 PF00168.30 C2 Domain 1 92 103 69.9 1.8e-19 1 CL0154
Cotton_A_33930_CDS 47 103 47 103 PF11961.8 DUF3475 Family 1 57 57 85.0 2.6e-24 1 No_clan
Cotton_A_33930_CDS 425 514 425 514 PF05003.12 DUF668 Family 1 89 89 113.8 3.8e-33 1 No_clan
Cotton_A_21115_CDS 85 307 85 307 PF01255.19 Prenyltransf Family 1 224 224 270.0 1.4e-80 1 No_clan
Cotton_A_13017_CDS 31 69 29 69 PF08263.12 LRRNT_2 Family 3 41 41 43.3 3.3e-11 1 No_clan
Cotton_A_13017_CDS 311 574 309 576 PF00069.25 Pkinase Domain 3 260 264 160.4 5.2e-47 1 CL0016
Cotton_A_05005_CDS 15 149 15 157 PF00071.22 Ras Domain 1 135 162 180.6 1.6e-53 1 CL0023
Cotton_A_02223_CDS 23 233 23 235 PF08449.11 UAA Family 1 213 302 172.3 1.3e-50 1 CL0184
Cotton_A_31804_CDS 108 255 98 256 PF00176.23 SNF2_N Family 204 349 350 68.5 4e-19 1 CL0023
Cotton_A_31804_CDS 276 400 275 400 PF00271.31 Helicase_C Family 2 111 111 55.9 4.7e-15 1 CL0023
Cotton_A_31804_CDS 911 939 910 939 PF01535.20 PPR Family 3 31 31 26.0 6.8e-06 1 CL0020
Cotton_A_31804_CDS 941 989 941 991 PF13041.6 PPR_2 Repeat 1 48 50 49.8 2.9e-13 1 CL0020
Cotton_A_31804_CDS 1009 1040 1008 1041 PF12854.7 PPR_1 Repeat 2 33 34 39.6 3.1e-10 1 CL0020
Cotton_A_31804_CDS 1049 1097 1049 1098 PF13041.6 PPR_2 Repeat 1 49 50 62.8 2.5e-17 1 CL0020
Cotton_A_31804_CDS 1120 1169 1120 1169 PF13041.6 PPR_2 Repeat 1 50 50 58.1 7.1e-16 1 CL0020
Cotton_A_31804_CDS 1201 1229 1200 1230 PF01535.20 PPR Family 2 30 31 13.6 0.061 1 CL0020
Cotton_A_31804_CDS 1235 1263 1234 1264 PF01535.20 PPR Family 2 30 31 12.2 0.17 1 CL0020
Cotton_A_31804_CDS 1408 1435 1406 1435 PF01535.20 PPR Family 3 30 31 16.6 0.0069 1 CL0020
Cotton_A_13784_CDS 230 277 229 278 PF00010.26 HLH Domain 2 52 53 45.9 4.1e-12 1 No_clan
Cotton_A_01367_CDS 140 316 140 318 PF00270.29 DEAD Domain 1 174 176 154.0 3.3e-45 1 CL0023
Cotton_A_01367_CDS 364 461 356 461 PF00271.31 Helicase_C Family 10 111 111 87.9 5.3e-25 1 CL0023
Cotton_A_01367_CDS 550 646 550 646 PF08152.12 GUCT Domain 1 96 96 92.0 2.2e-26 1 CL0221
Cotton_A_32785_CDS 246 422 234 422 PF00122.20 E1-E2_ATPase Family 11 181 181 157.7 2.1e-46 1 No_clan
Cotton_A_32785_CDS 440 685 438 686 PF00702.26 Hydrolase Domain 3 209 210 103.4 2e-29 1 CL0137
Cotton_A_02833_CDS 18 74 18 85 PF00076.22 RRM_1 Domain 1 56 70 63.3 1.4e-17 1 CL0221
Cotton_A_11082_CDS 256 300 251 301 PF13415.6 Kelch_3 Domain 7 48 49 22.4 0.00011 1 CL0186
Cotton_A_11082_CDS 736 943 735 944 PF00149.28 Metallophos Domain 2 203 204 117.3 1.3e-33 1 CL0163
Cotton_A_25403_CDS 62 94 62 94 PF02375.17 JmjN Family 1 33 34 53.6 1.5e-14 1 CL0029
Cotton_A_25403_CDS 238 361 238 361 PF02373.22 JmjC Domain 1 114 114 135.9 7.6e-40 1 CL0029
Cotton_A_25403_CDS 458 509 458 510 PF02928.16 zf-C5HC2 Domain 1 53 54 29.3 8.2e-07 1 No_clan
Cotton_A_12286_CDS 260 408 252 421 PF00067.22 p450 Domain 295 434 463 58.7 4.4e-16 1 No_clan
Cotton_A_05384_CDS 6 159 5 159 PF08534.10 Redoxin Domain 2 147 147 102.1 2.2e-29 1 CL0172
Cotton_A_22968_CDS 159 300 157 304 PF00004.29 AAA Domain 3 128 132 53.3 3.7e-14 1 CL0023
Cotton_A_26037_CDS 144 470 144 470 PF07946.14 DUF1682 Family 1 323 323 285.1 6.6e-85 1 No_clan
Cotton_A_05045_CDS 13 346 11 348 PF07690.16 MFS_1 Family 3 322 353 113.8 8e-33 1 CL0015
Cotton_A_04711_CDS 82 133 80 134 PF00010.26 HLH Domain 4 52 53 23.0 5.6e-05 1 No_clan
Cotton_A_13018_CDS 184 389 182 434 PF13343.6 SBP_bac_6 Family 4 189 245 107.1 9.1e-31 1 CL0177
Cotton_A_08839_CDS 49 182 45 183 PF00892.20 EamA Family 5 136 137 30.4 3.7e-07 1 CL0184
Cotton_A_28638_CDS 14 112 14 113 PF03195.14 LOB Family 1 98 99 129.6 5.4e-38 1 No_clan
Cotton_A_20089_CDS 45 81 1 85 PF00646.33 F-box Domain 8 44 48 26.8 3.4e-06 1 CL0271
Cotton_A_01659_CDS 245 509 244 509 PF03000.14 NPH3 Family 2 258 258 293.7 1.3e-87 1 No_clan
Cotton_A_00976_CDS 80 217 74 217 PF11909.8 NdhN Family 9 153 153 186.6 2.2e-55 1 No_clan
Cotton_A_20439_CDS 57 126 7 126 PF14510.6 ABC_trans_N Domain 23 81 81 44.3 2e-11 1 No_clan
Cotton_A_20439_CDS 152 334 151 335 PF00005.27 ABC_tran Domain 2 136 137 44.6 1.9e-11 1 CL0023
Cotton_A_20439_CDS 488 699 486 699 PF01061.24 ABC2_membrane Family 3 210 210 138.2 2.4e-40 1 CL0181
Cotton_A_20439_CDS 704 767 704 768 PF08370.11 PDR_assoc Family 1 64 65 82.1 1.8e-23 1 No_clan
Cotton_A_20439_CDS 847 998 846 998 PF00005.27 ABC_tran Domain 2 137 137 64.3 1.6e-17 1 CL0023
Cotton_A_20439_CDS 1143 1357 1143 1357 PF01061.24 ABC2_membrane Family 1 210 210 172.9 5.9e-51 1 CL0181
Cotton_A_24290_CDS 42 154 40 156 PF07732.15 Cu-oxidase_3 Domain 3 117 119 146.1 4.4e-43 1 CL0026
Cotton_A_24290_CDS 168 316 166 317 PF00394.22 Cu-oxidase Domain 3 158 159 147.6 3.1e-43 1 CL0026
Cotton_A_24290_CDS 426 558 425 560 PF07731.14 Cu-oxidase_2 Domain 2 135 137 140.2 3.4e-41 1 CL0026
Cotton_A_34259_CDS 371 399 367 406 PF00400.32 WD40 Repeat 5 32 38 17.0 0.0078 1 CL0186
Cotton_A_34259_CDS 516 755 516 755 PF12490.8 BCAS3 Family 1 246 246 293.4 1.3e-87 1 No_clan
Cotton_A_16106_CDS 16 146 10 154 PF00892.20 EamA Family 7 135 137 54.6 1.2e-14 1 CL0184
Cotton_A_16106_CDS 185 322 182 323 PF00892.20 EamA Family 3 136 137 38.1 1.6e-09 1 CL0184
Cotton_A_37834_CDS 102 422 102 422 PF12215.8 Glyco_hydr_116N Family 1 312 312 365.8 2e-109 1 CL0103
Cotton_A_37834_CDS 552 913 552 913 PF04685.13 DUF608 Domain 1 361 361 517.8 1.5e-155 1 CL0059
Cotton_A_02099_CDS 12 185 11 204 PF00300.22 His_Phos_1 Domain 2 161 194 86.4 1.9e-24 1 CL0071
Cotton_A_05469_CDS 35 308 27 311 PF03639.13 Glyco_hydro_81 Domain 9 315 323 211.9 1.3e-62 1 CL0103
Cotton_A_05469_CDS 315 665 314 666 PF17652.1 Glyco_hydro81C Domain 2 348 349 346.9 1.3e-103 1 CL0059
Cotton_A_02773_CDS 46 71 44 71 PF01239.22 PPTA Repeat 3 28 28 25.7 6.3e-06 1 CL0020
Cotton_A_02773_CDS 90 117 90 117 PF01239.22 PPTA Repeat 1 28 28 35.9 4.1e-09 1 CL0020
Cotton_A_02773_CDS 125 151 125 152 PF01239.22 PPTA Repeat 1 27 28 26.6 3.4e-06 1 CL0020
Cotton_A_02773_CDS 160 186 160 187 PF01239.22 PPTA Repeat 1 27 28 39.9 2.2e-10 1 CL0020
Cotton_A_02773_CDS 206 233 206 233 PF01239.22 PPTA Repeat 1 28 28 26.4 4.1e-06 1 CL0020
Cotton_A_03382_CDS 101 436 100 437 PF03124.14 EXS Family 2 330 331 340.9 8.1e-102 1 CL0182
Cotton_A_09731_CDS 16 76 14 78 PF13499.6 EF-hand_7 Domain 3 69 71 54.7 1e-14 1 CL0220
Cotton_A_09731_CDS 90 153 90 154 PF13499.6 EF-hand_7 Domain 1 70 71 58.1 8.9e-16 1 CL0220
Cotton_A_13393_CDS 135 183 135 184 PF13041.6 PPR_2 Repeat 1 49 50 41.4 1.2e-10 1 CL0020
Cotton_A_13393_CDS 212 238 212 239 PF01535.20 PPR Family 4 30 31 18.2 0.0021 1 CL0020
Cotton_A_13393_CDS 241 267 240 269 PF01535.20 PPR Family 2 28 31 27.9 1.6e-06 1 CL0020
Cotton_A_13393_CDS 291 317 291 319 PF01535.20 PPR Family 1 27 31 11.6 0.26 1 CL0020
Cotton_A_13393_CDS 327 353 327 355 PF01535.20 PPR Family 1 27 31 14.3 0.037 1 CL0020
Cotton_A_20650_CDS 6 59 2 60 PF10440.9 WIYLD Domain 7 60 61 83.7 5.7e-24 1 CL0214
Cotton_A_20650_CDS 474 621 474 621 PF05033.16 Pre-SET Family 1 109 109 59.8 3.4e-16 1 No_clan
Cotton_A_20650_CDS 641 758 641 758 PF00856.28 SET Family 1 169 169 60.6 2.4e-16 1 No_clan
Cotton_A_23717_CDS 51 322 47 323 PF04258.13 Peptidase_A22B Family 5 283 284 305.6 3.6e-91 1 CL0130
Cotton_A_30677_CDS 30 80 29 80 PF08100.11 Dimerisation Domain 2 51 51 69.2 2.1e-19 1 CL0123
Cotton_A_38642_CDS 16 68 16 81 PF00071.22 Ras Domain 1 53 162 41.0 1.5e-10 1 CL0023
Cotton_A_21154_CDS 77 167 77 168 PF03101.15 FAR1 Domain 1 89 90 91.5 4.1e-26 1 CL0274
Cotton_A_09676_CDS 89 222 89 223 PF00334.19 NDK Domain 1 134 135 180.4 1.5e-53 1 No_clan
Cotton_A_25236_CDS 22 110 15 114 PF02358.16 Trehalose_PPase Family 14 88 233 41.6 7.6e-11 1 CL0137
Cotton_A_25236_CDS 114 218 110 227 PF02358.16 Trehalose_PPase Family 116 222 233 111.7 2.8e-32 1 CL0137
Cotton_A_02306_CDS 20 259 20 259 PF13561.6 adh_short_C2 Domain 1 234 234 215.3 8.6e-64 1 CL0063
Cotton_A_09419_CDS 64 121 63 122 PF12708.7 Pectate_lyase_3 Family 2 58 215 32.9 5.4e-08 1 CL0268
Cotton_A_09419_CDS 159 441 146 447 PF00295.17 Glyco_hydro_28 Domain 51 319 325 159.2 1.3e-46 1 CL0268
Cotton_A_38695_CDS 7 185 7 186 PF01294.18 Ribosomal_L13e Family 1 179 180 263.8 7.1e-79 1 No_clan
Cotton_A_38793_CDS 53 277 52 277 PF00696.28 AA_kinase Family 2 241 241 99.7 1.9e-28 1 No_clan
Cotton_A_28204_CDS 64 120 64 121 PF00847.20 AP2 Domain 1 53 54 29.4 6.9e-07 1 CL0081
Cotton_A_28204_CDS 163 214 163 215 PF00847.20 AP2 Domain 1 53 54 46.6 3e-12 1 CL0081
Cotton_A_05804_CDS 60 160 27 161 PF01161.20 PBP Domain 23 131 132 51.7 1e-13 1 No_clan
Cotton_A_26904_CDS 193 255 193 255 PF01485.21 IBR Domain 1 62 62 48.7 6.7e-13 1 CL0229
Cotton_A_26904_CDS 272 312 262 320 PF01485.21 IBR Domain 12 54 62 25.4 1.2e-05 1 CL0229
Cotton_A_28668_CDS 170 357 170 359 PF10199.9 Adaptin_binding Family 1 119 121 64.7 1.1e-17 1 No_clan
Cotton_A_05158_CDS 38 59 38 62 PF06136.13 DUF966 Family 1 22 377 41.7 1.2e-10 1 No_clan
Cotton_A_19458_CDS 15 52 15 54 PF01428.16 zf-AN1 Family 1 38 40 38.2 1.2e-09 1 No_clan
Cotton_A_19458_CDS 101 140 101 142 PF01428.16 zf-AN1 Family 1 38 40 35.4 9e-09 1 No_clan
Cotton_A_20110_CDS 35 141 35 182 PF03634.13 TCP Family 1 103 156 116.3 1.8e-33 1 No_clan
Cotton_A_11057_CDS 12 181 6 182 PF00722.21 Glyco_hydro_16 Domain 8 176 177 162.7 5.7e-48 1 CL0004
Cotton_A_11057_CDS 216 260 213 260 PF06955.12 XET_C Family 5 47 47 55.1 4.9e-15 1 CL0004
Cotton_A_27935_CDS 2080 2467 2080 2468 PF12166.8 Piezo_RRas_bdg Family 1 424 425 377.0 1.5e-112 1 No_clan
Cotton_A_35244_CDS 58 130 56 131 PF00533.26 BRCT Family 3 78 79 32.4 9.1e-08 1 CL0459
Cotton_A_07327_CDS 12 47 11 47 PF08263.12 LRRNT_2 Family 6 41 41 39.0 7.2e-10 1 No_clan
Cotton_A_07327_CDS 76 135 75 135 PF13855.6 LRR_8 Repeat 2 61 61 37.4 1.6e-09 1 CL0022
Cotton_A_07327_CDS 290 553 288 556 PF00069.25 Pkinase Domain 3 260 264 157.7 3.4e-46 1 CL0016
Cotton_A_23646_CDS 31 640 12 640 PF00888.22 Cullin Family 13 618 618 607.9 2.2e-182 1 No_clan
Cotton_A_23646_CDS 667 729 667 729 PF10557.9 Cullin_Nedd8 Domain 1 63 63 90.8 4.2e-26 1 CL0123
Cotton_A_19846_CDS 12 64 7 114 PF00163.19 Ribosomal_S4 Family 5 81 83 29.2 1.3e-06 1 CL0492
Cotton_A_19846_CDS 109 152 109 155 PF01479.25 S4 Domain 1 44 48 47.8 8.5e-13 1 CL0492
Cotton_A_10353_CDS 198 225 198 227 PF14383.6 VARLMGL Domain 1 28 32 23.6 2.6e-05 1 No_clan
Cotton_A_10353_CDS 604 724 587 724 PF14309.6 DUF4378 Family 58 165 165 30.1 5.4e-07 1 No_clan
Cotton_A_25890_CDS 86 281 86 283 PF03587.14 EMG1 Family 1 192 194 244.8 5.2e-73 1 CL0098
Cotton_A_17882_CDS 22 97 17 97 PF03951.19 Gln-synt_N Domain 6 83 83 39.5 3.5e-10 1 No_clan
Cotton_A_17882_CDS 126 347 110 352 PF00120.24 Gln-synt_C Domain 24 257 345 54.4 9.7e-15 1 CL0286
Cotton_A_02507_CDS 33 108 32 111 PF07732.15 Cu-oxidase_3 Domain 2 79 119 81.8 3.7e-23 1 CL0026
Cotton_A_21312_CDS 39 190 35 190 PF00413.24 Peptidase_M10 Domain 3 153 158 150.7 3e-44 1 CL0126
Cotton_A_22858_CDS 22 140 20 140 PF00238.19 Ribosomal_L14 Domain 4 122 122 123.6 4.5e-36 1 No_clan
Cotton_A_35800_CDS 18 73 15 73 PF13855.6 LRR_8 Repeat 6 61 61 36.2 3.6e-09 1 CL0022
Cotton_A_33200_CDS 63 272 63 272 PF11152.8 CCB2_CCB4 Family 1 196 196 205.4 5e-61 1 CL0161
Cotton_A_07418_CDS 25 331 23 332 PF00248.21 Aldo_ket_red Domain 3 293 294 243.5 2.6e-72 1 No_clan
Cotton_A_29185_CDS 2 99 1 100 PF00069.25 Pkinase Domain 105 197 264 79.5 2.6e-22 1 CL0016
Cotton_A_06291_CDS 18 875 17 875 PF11145.8 DUF2921 Family 3 894 894 824.7 8.3e-248 1 No_clan
Cotton_A_08803_CDS 1 71 1 71 PF13456.6 RVT_3 Domain 52 124 124 45.1 7.8e-12 1 CL0219
Cotton_A_29006_CDS 140 401 140 401 PF02636.17 Methyltransf_28 Family 1 262 262 247.0 2.4e-73 1 CL0063
Cotton_A_24448_CDS 337 384 335 384 PF00010.26 HLH Domain 4 53 53 25.8 7.8e-06 1 No_clan
Cotton_A_32644_CDS 105 282 105 283 PF02194.15 PXA Family 1 181 182 129.9 1e-37 1 No_clan
Cotton_A_32644_CDS 557 661 552 661 PF00787.24 PX Domain 6 113 113 55.8 4.1e-15 1 No_clan
Cotton_A_32644_CDS 859 1001 859 1002 PF08628.12 Nexin_C Family 1 111 112 113.2 8.8e-33 1 No_clan
Cotton_A_37266_CDS 64 214 63 214 PF00190.22 Cupin_1 Domain 2 151 151 167.8 1.2e-49 1 CL0029
Cotton_A_02920_CDS 108 243 103 247 PF03381.15 CDC50 Family 63 217 280 117.2 9.1e-34 1 No_clan
Cotton_A_04948_CDS 83 397 83 397 PF14476.6 Chloroplast_duf Family 1 320 320 526.2 2.4e-158 1 No_clan
Cotton_A_17591_CDS 5 51 5 51 PF00304.20 Gamma-thionin Domain 1 47 47 66.2 2.2e-18 1 CL0054
Cotton_A_00575_CDS 25 51 25 51 PF09282.10 Mago-bind Domain 1 27 27 46.9 1.8e-12 1 No_clan
Cotton_A_08354_CDS 25 138 25 166 PF05703.11 Auxin_canalis Family 1 84 256 83.4 2.4e-23 1 No_clan
Cotton_A_20678_CDS 222 268 222 268 PF10533.9 Plant_zn_clust Domain 1 49 49 61.2 7e-17 1 No_clan
Cotton_A_20678_CDS 272 328 271 329 PF03106.15 WRKY Domain 2 58 59 93.0 9.7e-27 1 CL0274
Cotton_A_05962_CDS 1 79 1 82 PF13456.6 RVT_3 Domain 42 121 124 64.0 1.1e-17 1 CL0219
Cotton_A_03551_CDS 24 118 24 118 PF00338.22 Ribosomal_S10 Family 1 98 98 97.7 3.5e-28 1 No_clan
Cotton_A_14682_CDS 106 218 106 218 PF00919.20 UPF0004 Family 1 98 98 105.2 1.5e-30 1 CL0304
Cotton_A_14682_CDS 266 306 266 310 PF04055.21 Radical_SAM Domain 1 45 167 39.3 8.4e-10 1 CL0036
Cotton_A_24824_CDS 71 102 69 102 PF06200.14 tify Domain 3 34 34 39.1 3.3e-10 1 No_clan
Cotton_A_24824_CDS 136 177 136 179 PF06203.14 CCT Motif 1 42 44 54.3 9.8e-15 1 CL0281
Cotton_A_24824_CDS 208 244 208 245 PF00320.27 GATA Domain 1 35 36 50.4 1.2e-13 1 CL0167
Cotton_A_04583_CDS 266 291 263 291 PF00397.26 WW Domain 5 31 31 32.6 6e-08 1 CL0680
Cotton_A_04583_CDS 488 533 484 533 PF01846.19 FF Family 5 51 51 49.1 4.8e-13 1 CL0584
Cotton_A_04583_CDS 552 599 551 600 PF01846.19 FF Family 2 49 51 30.3 3.6e-07 1 CL0584
Cotton_A_04583_CDS 621 668 619 668 PF01846.19 FF Family 3 51 51 51.2 1e-13 1 CL0584
Cotton_A_04583_CDS 721 773 721 773 PF01846.19 FF Family 1 51 51 26.9 4.1e-06 1 CL0584
Cotton_A_04583_CDS 784 840 780 840 PF01846.19 FF Family 5 51 51 22.7 8.5e-05 1 CL0584
Cotton_A_16832_CDS 12 70 11 75 PF03069.15 FmdA_AmdA Family 2 60 373 56.3 2.4e-15 1 No_clan
Cotton_A_16832_CDS 74 470 70 470 PF03069.15 FmdA_AmdA Family 6 373 373 544.2 1.3e-163 1 No_clan
Cotton_A_38581_CDS 79 299 79 300 PF01128.19 IspD Family 1 220 221 191.1 2.2e-56 1 CL0110
Cotton_A_03889_CDS 15 365 13 365 PF03849.14 Tfb2 Family 3 355 355 364.0 7.4e-109 1 No_clan
Cotton_A_03889_CDS 380 447 380 447 PF18307.1 Tfb2_C Domain 1 68 68 73.9 1e-20 1 No_clan
Cotton_A_06531_CDS 101 177 97 179 PF07885.16 Ion_trans_2 Family 5 77 79 58.3 5.6e-16 1 CL0030
Cotton_A_06531_CDS 226 292 218 294 PF07885.16 Ion_trans_2 Family 8 77 79 47.6 1.2e-12 1 CL0030
Cotton_A_03609_CDS 48 111 48 112 PF17785.1 PUA_3 Domain 1 62 64 45.1 6.4e-12 1 CL0178
Cotton_A_03609_CDS 234 394 209 411 PF10672.9 Methyltrans_SAM Family 83 246 286 46.4 2.8e-12 1 CL0063
Cotton_A_34631_CDS 49 72 49 75 PF03759.13 PRONE Family 1 24 363 31.7 7e-08 1 No_clan
Cotton_A_34631_CDS 75 377 73 378 PF03759.13 PRONE Family 48 362 363 433.9 3.9e-130 1 No_clan
Cotton_A_40609_CDS 2 104 2 105 PF02362.21 B3 Family 1 100 101 102.2 1.1e-29 1 CL0405
Cotton_A_02838_CDS 41 272 34 272 PF00481.21 PP2C Family 10 258 258 188.9 1.2e-55 1 CL0238
Cotton_A_22122_CDS 648 1168 593 1169 PF15785.5 SMG1 Family 125 626 627 164.4 3.5e-48 1 No_clan
Cotton_A_22122_CDS 2024 2299 2023 2300 PF00454.27 PI3_PI4_kinase Family 2 249 250 156.8 8.2e-46 1 CL0016
Cotton_A_22122_CDS 3765 3794 3763 3794 PF02260.20 FATC Family 3 32 32 52.0 4.3e-14 1 No_clan
Cotton_A_01489_CDS 99 446 99 447 PF03630.14 Fumble Family 1 329 330 435.3 1.4e-130 1 CL0108
Cotton_A_01489_CDS 643 924 590 928 PF01937.19 DUF89 Family 68 348 353 144.4 4.2e-42 1 No_clan
Cotton_A_23121_CDS 42 66 41 67 PF13912.6 zf-C2H2_6 Domain 2 26 27 26.7 4.1e-06 1 CL0361
Cotton_A_33555_CDS 10 136 10 137 PF02365.15 NAM Family 1 125 126 130.5 6.4e-38 1 No_clan
Cotton_A_24302_CDS 21 262 20 264 PF01501.20 Glyco_transf_8 Family 2 254 256 129.9 1.1e-37 1 CL0110
Cotton_A_01185_CDS 20 128 20 131 PF00072.24 Response_reg Domain 1 109 112 83.2 1.4e-23 1 CL0304
Cotton_A_15344_CDS 30 91 29 91 PF00226.31 DnaJ Domain 2 63 63 88.9 1.7e-25 1 CL0392
Cotton_A_08402_CDS 28 194 27 198 PF01210.23 NAD_Gly3P_dh_N Family 2 154 157 152.5 8.9e-45 1 CL0063
Cotton_A_08402_CDS 217 372 217 373 PF07479.14 NAD_Gly3P_dh_C Domain 1 141 142 142.1 1.4e-41 1 CL0106
Cotton_A_04087_CDS 39 76 38 76 PF08263.12 LRRNT_2 Family 2 41 41 45.2 8.6e-12 1 No_clan
Cotton_A_04087_CDS 602 656 602 656 PF13855.6 LRR_8 Repeat 7 61 61 34.1 1.6e-08 1 CL0022
Cotton_A_24787_CDS 69 379 69 381 PF00657.22 Lipase_GDSL Family 1 198 200 31.7 1.4e-07 1 CL0264
Cotton_A_00693_CDS 33 349 33 349 PF00225.23 Kinesin Domain 1 333 333 316.7 1.5e-94 1 CL0023
Cotton_A_00693_CDS 732 891 732 892 PF11995.8 DUF3490 Family 1 160 161 259.2 1.2e-77 1 No_clan
Cotton_A_24139_CDS 22 313 21 316 PF02374.15 ArsA_ATPase Domain 2 302 305 337.3 7.8e-101 1 CL0023
Cotton_A_14740_CDS 225 308 225 308 PF06507.13 Auxin_resp Family 1 83 83 117.4 2.4e-34 1 No_clan
Cotton_A_14740_CDS 728 817 706 825 PF02309.16 AUX_IAA Family 119 228 237 25.0 1.5e-05 1 CL0072
Cotton_A_36113_CDS 50 276 47 299 PF00022.19 Actin Family 15 213 407 156.8 6.2e-46 1 CL0108
Cotton_A_19368_CDS 109 153 108 153 PF13639.6 zf-RING_2 Domain 2 44 44 47.1 2.2e-12 1 CL0229
Cotton_A_32783_CDS 12 360 12 360 PF01266.24 DAO Domain 1 352 352 189.0 1.7e-55 1 CL0063
Cotton_A_04297_CDS 347 389 346 389 PF13639.6 zf-RING_2 Domain 2 44 44 38.5 1.1e-09 1 CL0229
Cotton_A_22595_CDS 18 103 15 104 PF03083.16 MtN3_slv Family 4 86 87 70.9 7e-20 1 CL0141
Cotton_A_22595_CDS 138 221 137 223 PF03083.16 MtN3_slv Family 2 85 87 73.9 7.9e-21 1 CL0141
Cotton_A_10388_CDS 169 218 168 219 PF00847.20 AP2 Domain 2 53 54 54.5 1e-14 1 CL0081
Cotton_A_19873_CDS 6 101 3 103 PF08969.11 USP8_dimer Domain 16 113 115 41.8 1e-10 1 No_clan
Cotton_A_19873_CDS 329 436 328 437 PF01398.21 JAB Family 2 117 118 67.2 1.2e-18 1 CL0366
Cotton_A_18881_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 53.6 1.8e-14 1 CL0123
Cotton_A_18881_CDS 67 112 67 112 PF00249.31 Myb_DNA-binding Domain 1 46 46 46.9 2.3e-12 1 CL0123
Cotton_A_10769_CDS 86 569 85 576 PF01039.22 Carboxyl_trans Family 2 484 494 532.1 1.3e-159 1 CL0127
Cotton_A_01867_CDS 7 53 6 53 PF00319.18 SRF-TF Domain 2 48 48 57.3 7.6e-16 1 No_clan
Cotton_A_22943_CDS 10 57 10 57 PF00319.18 SRF-TF Domain 1 48 48 93.0 5.7e-27 1 No_clan
Cotton_A_22943_CDS 84 171 79 172 PF01486.17 K-box Family 5 92 93 98.1 2.5e-28 1 No_clan
Cotton_A_18694_CDS 23 135 21 136 PF01426.18 BAH Domain 3 121 122 79.9 1.3e-22 1 No_clan
Cotton_A_18694_CDS 140 188 140 189 PF00628.29 PHD Domain 1 51 52 36.7 2.9e-09 1 CL0390
Cotton_A_18694_CDS 344 755 344 755 PF01603.20 B56 Family 1 415 415 632.0 4.5e-190 1 CL0020
Cotton_A_01328_CDS 230 391 222 401 PF10268.9 Tmemb_161AB Family 228 390 475 36.8 1.8e-09 1 No_clan
Cotton_A_41004_CDS 119 318 119 318 PF03145.16 Sina Family 1 200 200 263.9 1e-78 1 CL0389
Cotton_A_12515_CDS 135 160 135 160 PF12874.7 zf-met Domain 1 25 25 22.2 0.00014 1 CL0361
Cotton_A_28897_CDS 7 34 7 35 PF00036.32 EF-hand_1 Domain 1 28 29 28.5 6.4e-07 1 CL0220
Cotton_A_28897_CDS 56 119 54 119 PF13499.6 EF-hand_7 Domain 4 71 71 50.1 2.9e-13 1 CL0220
Cotton_A_34698_CDS 23 70 23 75 PF04145.15 Ctr Family 1 48 148 26.1 1.1e-05 1 No_clan
Cotton_A_34698_CDS 81 122 69 123 PF04145.15 Ctr Family 106 147 148 40.0 5.6e-10 1 No_clan
Cotton_A_34998_CDS 196 229 196 231 PF00320.27 GATA Domain 1 34 36 53.1 1.7e-14 1 CL0167
Cotton_A_07358_CDS 99 256 99 256 PF14299.6 PP2 Family 1 146 146 172.1 7.2e-51 1 No_clan
Cotton_A_27158_CDS 76 490 74 491 PF00654.20 Voltage_CLC Family 3 353 354 295.9 4.3e-88 1 No_clan
Cotton_A_27158_CDS 637 685 632 686 PF00571.28 CBS Domain 5 50 57 21.9 0.00017 1 No_clan
Cotton_A_33514_CDS 39 492 39 500 PF00067.22 p450 Domain 1 455 463 352.9 2.4e-105 1 No_clan
Cotton_A_10025_CDS 52 113 32 113 PF04433.17 SWIRM Domain 26 89 89 55.7 4.8e-15 1 CL0123
Cotton_A_02113_CDS 47 145 46 173 PF02535.22 Zip Family 2 106 333 64.0 1.4e-17 1 CL0184
Cotton_A_02113_CDS 165 325 140 326 PF02535.22 Zip Family 175 332 333 110.8 7.8e-32 1 CL0184
Cotton_A_35171_CDS 191 237 191 237 PF12906.7 RINGv Domain 1 48 48 49.8 2.8e-13 1 CL0229
Cotton_A_15154_CDS 50 152 48 153 PF01920.20 Prefoldin_2 Coiled-coil 3 105 106 87.6 4.7e-25 1 CL0200
Cotton_A_20665_CDS 37 133 37 150 PF14226.6 DIOX_N Family 1 100 118 65.0 1e-17 1 CL0029
Cotton_A_20665_CDS 189 256 185 271 PF03171.20 2OG-FeII_Oxy Domain 5 72 101 59.1 4.7e-16 1 CL0029
Cotton_A_16352_CDS 29 71 22 74 PF13456.6 RVT_3 Domain 10 52 124 21.8 0.00013 1 CL0219
Cotton_A_07598_CDS 55 141 55 145 PF01554.18 MatE Family 1 86 161 69.8 2.1e-19 1 CL0222
Cotton_A_08243_CDS 222 310 222 310 PF02922.18 CBM_48 Domain 1 84 84 61.0 1.1e-16 1 CL0369
Cotton_A_08243_CDS 378 463 378 469 PF00128.24 Alpha-amylase Domain 1 79 337 35.0 1.1e-08 1 CL0058
Cotton_A_18760_CDS 75 287 57 292 PF00294.24 PfkB Family 30 246 302 77.7 9.5e-22 1 CL0118
Cotton_A_11611_CDS 18 401 3 412 PF00067.22 p450 Domain 36 445 463 203.9 4e-60 1 No_clan
Cotton_A_36381_CDS 10 73 10 83 PF13325.6 MCRS_N Family 1 63 199 55.9 5.4e-15 1 No_clan
Cotton_A_36381_CDS 777 848 776 849 PF00498.26 FHA Family 2 68 69 25.7 1.1e-05 1 CL0357
Cotton_A_41141_CDS 100 233 99 233 PF04116.13 FA_hydroxylase Family 2 133 133 84.5 7.7e-24 1 No_clan
Cotton_A_15190_CDS 31 183 31 191 PF01227.22 GTP_cyclohydroI Domain 1 141 179 120.5 5.3e-35 1 CL0334
Cotton_A_15190_CDS 271 457 269 458 PF01227.22 GTP_cyclohydroI Domain 3 178 179 134.1 3.4e-39 1 CL0334
Cotton_A_39475_CDS 41 212 40 213 PF01595.20 DUF21 Domain 2 175 176 129.4 1.1e-37 1 No_clan
Cotton_A_28296_CDS 25 186 25 186 PF04862.12 DUF642 Domain 1 157 157 227.8 5e-68 1 CL0202
Cotton_A_28296_CDS 197 365 197 366 PF04862.12 DUF642 Domain 1 156 157 68.8 4.5e-19 1 CL0202
Cotton_A_31749_CDS 17 166 15 174 PF01094.28 ANF_receptor Family 63 237 354 53.1 2.5e-14 1 CL0144
Cotton_A_31749_CDS 240 339 228 340 PF10613.9 Lig_chan-Glu_bd Domain 13 112 115 45.1 9.7e-12 1 CL0177
Cotton_A_01352_CDS 48 142 47 163 PF00732.19 GMC_oxred_N Domain 2 100 296 38.3 9.4e-10 1 CL0063
Cotton_A_01352_CDS 211 301 174 304 PF00732.19 GMC_oxred_N Domain 192 276 296 37.2 2.1e-09 1 CL0063
Cotton_A_01352_CDS 364 509 364 511 PF05199.13 GMC_oxred_C Domain 1 142 144 111.8 3.7e-32 1 No_clan
Cotton_A_05967_CDS 57 212 56 213 PF01257.19 2Fe-2S_thioredx Family 2 144 145 176.6 2.6e-52 1 CL0172
Cotton_A_05542_CDS 12 62 12 64 PF09713.10 A_thal_3526 Domain 1 51 53 91.9 2.1e-26 1 No_clan
Cotton_A_29110_CDS 76 378 76 379 PF00459.25 Inositol_P Family 1 271 272 199.5 7.4e-59 1 CL0171
Cotton_A_07093_CDS 1 207 1 207 PF07279.11 DUF1442 Family 1 208 218 304.0 4.4e-91 1 CL0063
Cotton_A_17306_CDS 52 163 49 188 PF13962.6 PGG Domain 4 105 116 72.6 2.2e-20 1 No_clan
Cotton_A_05969_CDS 29 182 9 183 PF02309.16 AUX_IAA Family 47 235 237 193.0 6.8e-57 1 CL0072
Cotton_A_22494_CDS 1 18 1 25 PF02533.15 PsbK Family 20 37 41 37.4 2.1e-09 1 No_clan
Cotton_A_15809_CDS 1 110 1 112 PF00493.23 MCM Domain 111 221 224 145.3 1.4e-42 1 CL0023
Cotton_A_15809_CDS 132 169 131 172 PF17855.1 MCM_lid Domain 2 39 87 27.0 4.6e-06 1 CL0671
Cotton_A_39976_CDS 191 449 191 449 PF00069.25 Pkinase Domain 1 264 264 248.6 6.5e-74 1 CL0016
Cotton_A_39976_CDS 497 557 495 558 PF13499.6 EF-hand_7 Domain 4 70 71 49.3 5.2e-13 1 CL0220
Cotton_A_39976_CDS 567 628 566 628 PF13499.6 EF-hand_7 Domain 2 71 71 50.4 2.3e-13 1 CL0220
Cotton_A_23702_CDS 433 502 432 503 PF07983.13 X8 Domain 2 75 76 72.6 3.3e-20 1 No_clan
Cotton_A_09969_CDS 47 320 47 321 PF00732.19 GMC_oxred_N Domain 1 295 296 120.5 8.6e-35 1 CL0063
Cotton_A_09969_CDS 390 535 390 537 PF05199.13 GMC_oxred_C Domain 1 142 144 97.7 8.4e-28 1 No_clan
Cotton_A_23442_CDS 75 156 74 160 PF03083.16 MtN3_slv Family 2 83 87 75.3 2.9e-21 1 CL0141
Cotton_A_29501_CDS 156 271 156 272 PF03479.15 DUF296 Domain 1 106 107 96.1 1.4e-27 1 CL0615
Cotton_A_15392_CDS 4 71 1 72 PF07859.13 Abhydrolase_3 Domain 147 210 211 46.8 3.1e-12 1 CL0028
Cotton_A_06901_CDS 12 69 4 75 PF00067.22 p450 Domain 398 456 463 38.2 7.3e-10 1 No_clan
Cotton_A_20308_CDS 40 180 40 181 PF04185.14 Phosphoesterase Family 1 135 356 105.3 3.9e-30 1 CL0088
Cotton_A_20308_CDS 256 303 253 307 PF04185.14 Phosphoesterase Family 292 333 356 43.4 2.5e-11 1 CL0088
Cotton_A_14367_CDS 1 94 1 94 PF07777.11 MFMR Family 1 97 97 116.2 6.9e-34 1 No_clan
Cotton_A_14367_CDS 122 241 122 245 PF16596.5 MFMR_assoc Disordered 1 130 134 67.2 1.9e-18 1 No_clan
Cotton_A_14367_CDS 262 324 262 325 PF00170.21 bZIP_1 Family 1 63 64 73.1 1.5e-20 1 CL0018
Cotton_A_39993_CDS 133 232 133 232 PF00011.21 HSP20 Family 1 102 102 105.5 1.3e-30 1 CL0190
Cotton_A_04101_CDS 8 103 8 113 PF18052.1 Rx_N Domain 1 92 93 81.1 5.3e-23 1 No_clan
Cotton_A_04101_CDS 181 424 180 426 PF00931.22 NB-ARC Domain 2 250 252 162.8 8.3e-48 1 CL0023
Cotton_A_38986_CDS 5 82 3 89 PF17800.1 NPL Domain 3 93 105 37.5 2.8e-09 1 CL0055
Cotton_A_01013_CDS 79 205 71 205 PF17808.1 fn3_PAP Domain 12 118 118 111.6 2.2e-32 1 CL0159
Cotton_A_01013_CDS 210 310 209 317 PF16656.5 Pur_ac_phosph_N Domain 2 87 94 41.1 2e-10 1 CL0159
Cotton_A_01013_CDS 279 427 275 427 PF00149.28 Metallophos Domain 74 204 204 44.4 2.6e-11 1 CL0163
Cotton_A_01013_CDS 459 517 459 517 PF14008.6 Metallophos_C Domain 1 63 63 41.2 2.3e-10 1 No_clan
Cotton_A_03496_CDS 22 55 6 56 PF00383.23 dCMP_cyt_deam_1 Family 67 100 101 33.3 3.5e-08 1 CL0109
Cotton_A_03973_CDS 40 137 40 149 PF14226.6 DIOX_N Family 1 98 118 88.5 5.1e-25 1 CL0029
Cotton_A_03973_CDS 196 293 194 294 PF03171.20 2OG-FeII_Oxy Domain 3 100 101 96.6 9.8e-28 1 CL0029
Cotton_A_16506_CDS 29 173 29 175 PF04702.12 Vicilin_N Family 1 147 147 170.6 1.8e-50 1 No_clan
Cotton_A_16506_CDS 208 338 185 340 PF00190.22 Cupin_1 Domain 23 149 151 39.4 4.2e-10 1 CL0029
Cotton_A_16506_CDS 386 545 386 567 PF00190.22 Cupin_1 Domain 1 128 151 90.6 7.1e-26 1 CL0029
Cotton_A_28958_CDS 40 147 40 147 PF04398.12 DUF538 Family 1 112 112 124.3 2.9e-36 1 No_clan
Cotton_A_21304_CDS 361 520 360 520 PF09736.9 Bud13 Family 2 145 145 139.6 9.2e-41 1 No_clan
Cotton_A_13789_CDS 194 547 194 547 PF00443.29 UCH Family 1 257 257 153.3 8e-45 1 CL0125
Cotton_A_19324_CDS 2 180 1 183 PF00248.21 Aldo_ket_red Domain 100 289 294 112.6 2e-32 1 No_clan
Cotton_A_21690_CDS 41 252 41 252 PF06764.11 DUF1223 Family 1 202 202 218.9 6.8e-65 1 CL0172
Cotton_A_16254_CDS 27 104 27 104 PF14569.6 zf-UDP Domain 1 78 78 143.0 2.3e-42 1 CL0229
Cotton_A_16254_CDS 330 1031 330 1034 PF03552.14 Cellulose_synt Family 1 719 722 1334.8 0 1 CL0110
Cotton_A_18464_CDS 432 763 432 763 PF00069.25 Pkinase Domain 1 264 264 176.3 7.5e-52 1 CL0016
Cotton_A_19437_CDS 74 130 74 131 PF00847.20 AP2 Domain 1 53 54 31.0 2.3e-07 1 CL0081
Cotton_A_19437_CDS 173 224 173 225 PF00847.20 AP2 Domain 1 53 54 44.8 1e-11 1 CL0081
Cotton_A_01964_CDS 7 57 5 57 PF13855.6 LRR_8 Repeat 11 61 61 28.6 8.8e-07 1 CL0022
Cotton_A_01964_CDS 94 154 94 154 PF13855.6 LRR_8 Repeat 1 61 61 33.4 2.9e-08 1 CL0022
Cotton_A_01964_CDS 199 258 198 258 PF13855.6 LRR_8 Repeat 2 61 61 37.7 1.2e-09 1 CL0022
Cotton_A_01964_CDS 390 411 389 411 PF00560.33 LRR_1 Repeat 2 23 23 12.4 0.19 1 CL0022
Cotton_A_01964_CDS 541 802 537 806 PF07714.17 Pkinase_Tyr Domain 5 255 259 157.8 3.1e-46 1 CL0016
Cotton_A_01964_CDS 850 1056 846 1071 PF07714.17 Pkinase_Tyr Domain 5 220 259 126.6 9.9e-37 1 CL0016
Cotton_A_15918_CDS 88 461 88 461 PF00916.20 Sulfate_transp Family 1 380 380 400.2 7.4e-120 1 CL0062
Cotton_A_15918_CDS 512 631 512 631 PF01740.21 STAS Domain 1 117 117 92.7 1.1e-26 1 CL0502
Cotton_A_00503_CDS 47 186 47 192 PF00069.25 Pkinase Domain 1 131 264 72.4 3.6e-20 1 CL0016
Cotton_A_00503_CDS 319 483 313 483 PF00069.25 Pkinase Domain 133 264 264 70.6 1.3e-19 1 CL0016
Cotton_A_20630_CDS 405 449 405 449 PF07223.11 DUF1421 Domain 1 45 45 79.8 9.6e-23 1 CL0214
Cotton_A_36782_CDS 10 251 9 268 PF00149.28 Metallophos Domain 2 187 204 54.7 1.8e-14 1 CL0163
Cotton_A_29710_CDS 139 291 114 328 PF01704.18 UDPGP Family 51 191 413 60.4 1.2e-16 1 CL0110
Cotton_A_22960_CDS 43 86 43 86 PF03470.14 zf-XS Domain 1 43 43 64.3 8.9e-18 1 No_clan
Cotton_A_22960_CDS 115 158 115 158 PF03468.14 XS Domain 1 42 113 31.4 1.9e-07 1 CL0221
Cotton_A_01563_CDS 32 60 25 60 PF00400.32 WD40 Repeat 8 38 38 13.2 0.13 1 CL0186
Cotton_A_01563_CDS 111 147 109 147 PF00400.32 WD40 Repeat 3 38 38 22.1 0.0002 1 CL0186
Cotton_A_37299_CDS 286 580 286 581 PF01501.20 Glyco_transf_8 Family 1 255 256 143.5 8.3e-42 1 CL0110
Cotton_A_22303_CDS 7 45 6 46 PF08263.12 LRRNT_2 Family 2 40 41 30.6 3.1e-07 1 No_clan
Cotton_A_22303_CDS 99 121 99 121 PF00560.33 LRR_1 Repeat 1 23 23 9.4 1.8 1 CL0022
Cotton_A_22303_CDS 163 207 160 207 PF13855.6 LRR_8 Repeat 17 61 61 30.9 1.7e-07 1 CL0022
Cotton_A_22303_CDS 214 255 210 255 PF13855.6 LRR_8 Repeat 20 61 61 30.1 3e-07 1 CL0022
Cotton_A_22303_CDS 270 329 267 329 PF13855.6 LRR_8 Repeat 4 61 61 30.5 2.2e-07 1 CL0022
Cotton_A_32194_CDS 76 146 33 149 PF02519.14 Auxin_inducible Family 20 87 90 69.4 2.2e-19 1 No_clan
Cotton_A_05806_CDS 1198 1434 1198 1434 PF18296.1 MID_MedPIWI Domain 1 246 246 135.3 2.9e-39 1 No_clan
Cotton_A_05806_CDS 1594 1990 1581 1991 PF06333.12 Med13_C Domain 28 329 330 42.6 4.4e-11 1 No_clan
Cotton_A_18321_CDS 153 532 151 532 PF01053.20 Cys_Met_Meta_PP Domain 3 382 382 438.2 1.8e-131 1 CL0061
Cotton_A_38734_CDS 66 183 63 208 PF01925.19 TauE Family 3 111 236 43.2 3.4e-11 1 CL0292
Cotton_A_38734_CDS 235 425 228 427 PF01925.19 TauE Family 60 234 236 48.2 1e-12 1 CL0292
Cotton_A_14598_CDS 10 54 9 57 PF00249.31 Myb_DNA-binding Domain 2 42 46 26.3 6.1e-06 1 CL0123
Cotton_A_00242_CDS 53 211 50 214 PF00160.21 Pro_isomerase Domain 4 155 158 149.2 1.2e-43 1 CL0475
Cotton_A_03912_CDS 134 212 129 220 PF00153.27 Mito_carr Family 7 81 97 41.1 1.3e-10 1 No_clan
Cotton_A_03912_CDS 239 313 230 324 PF00153.27 Mito_carr Family 14 85 97 44.6 1e-11 1 No_clan
Cotton_A_03912_CDS 341 400 329 410 PF00153.27 Mito_carr Family 18 80 97 31.5 1.2e-07 1 No_clan
Cotton_A_40876_CDS 26 72 24 73 PF01084.20 Ribosomal_S18 Family 3 49 52 64.7 6.7e-18 1 CL0123
Cotton_A_30622_CDS 1 83 1 84 PF16639.5 Apocytochr_F_N Domain 8 90 155 145.8 1.2e-42 1 No_clan
Cotton_A_41113_CDS 99 500 68 507 PF05701.11 WEMBL Family 131 526 562 93.9 9.7e-27 1 No_clan
Cotton_A_32810_CDS 115 284 114 284 PF14299.6 PP2 Family 2 146 146 128.0 2.8e-37 1 No_clan
Cotton_A_38161_CDS 251 313 246 315 PF00076.22 RRM_1 Domain 6 68 70 41.2 1.1e-10 1 CL0221
Cotton_A_38161_CDS 349 420 349 420 PF00076.22 RRM_1 Domain 1 70 70 77.2 6.3e-22 1 CL0221
Cotton_A_38161_CDS 440 538 440 539 PF15519.6 RBM39linker Domain 1 90 91 85.6 3.7e-24 1 No_clan
Cotton_A_38161_CDS 544 597 543 598 PF00076.22 RRM_1 Domain 12 69 70 24.7 1.5e-05 1 CL0221
Cotton_A_16198_CDS 34 213 33 223 PF01145.25 Band_7 Family 2 168 178 87.4 1.1e-24 1 CL0433
Cotton_A_12794_CDS 49 236 49 241 PF00106.25 adh_short Domain 1 188 195 126.5 8.4e-37 1 CL0063
Cotton_A_16667_CDS 27 119 26 122 PF13943.6 WPP Domain 2 96 99 121.4 1.7e-35 1 No_clan
Cotton_A_14604_CDS 68 159 67 161 PF04140.14 ICMT Family 2 92 94 96.6 8.8e-28 1 CL0115
Cotton_A_05447_CDS 1 743 1 744 PF05879.12 RHD3 Family 1 742 743 957.6 4.1e-288 1 CL0023
Cotton_A_22106_CDS 52 379 52 385 PF00295.17 Glyco_hydro_28 Domain 1 320 325 328.2 4.7e-98 1 CL0268
Cotton_A_36220_CDS 31 159 31 159 PF00416.22 Ribosomal_S13 Family 1 128 128 194.8 6.1e-58 1 CL0303
Cotton_A_26237_CDS 9 156 8 157 PF04043.15 PMEI Domain 2 152 154 91.8 5.4e-26 1 No_clan
Cotton_A_12605_CDS 99 296 95 319 PF09531.10 Ndc1_Nup Family 139 356 611 41.6 6.5e-11 1 No_clan
Cotton_A_12605_CDS 316 439 304 443 PF09531.10 Ndc1_Nup Family 489 594 611 34.0 1.3e-08 1 No_clan
Cotton_A_29823_CDS 294 703 289 704 PF00176.23 SNF2_N Family 55 349 350 228.6 8.4e-68 1 CL0023
Cotton_A_29823_CDS 753 797 751 800 PF13920.6 zf-C3HC4_3 Domain 4 46 50 30.4 2.5e-07 1 CL0229
Cotton_A_29823_CDS 905 1001 891 1001 PF00271.31 Helicase_C Family 17 111 111 53.3 3e-14 1 CL0023
Cotton_A_33648_CDS 26 99 20 99 PF11744.8 ALMT Family 57 131 469 90.3 1.2e-25 1 CL0307
Cotton_A_24932_CDS 8 179 3 180 PF02485.21 Branch Family 62 246 247 207.7 1.9e-61 1 CL0110
Cotton_A_22615_CDS 278 334 277 335 PF03106.15 WRKY Domain 2 58 59 83.5 8.6e-24 1 CL0274
Cotton_A_01332_CDS 94 183 79 189 PF00067.22 p450 Domain 201 294 463 26.1 3.4e-06 1 No_clan
Cotton_A_30287_CDS 4 85 2 86 PF00276.20 Ribosomal_L23 Family 3 84 86 68.0 6.8e-19 1 No_clan
Cotton_A_36683_CDS 29 122 29 124 PF14363.6 AAA_assoc Family 1 94 96 78.7 3.1e-22 1 No_clan
Cotton_A_36683_CDS 247 393 246 394 PF00004.29 AAA Domain 2 131 132 55.5 7.8e-15 1 CL0023
Cotton_A_18490_CDS 116 339 116 339 PF07816.11 DUF1645 Family 1 191 191 176.8 7e-52 1 No_clan
Cotton_A_35347_CDS 28 327 28 329 PF00124.19 Photo_RC Family 1 258 260 313.0 1.3e-93 1 No_clan
Cotton_A_14614_CDS 3 121 1 126 PF04615.13 Utp14 Family 255 384 756 108.2 4.6e-31 1 No_clan
Cotton_A_39616_CDS 8 79 4 116 PF18052.1 Rx_N Domain 12 83 93 61.9 5e-17 1 No_clan
Cotton_A_17396_CDS 77 132 77 133 PF01849.18 NAC Family 1 56 57 79.1 1.7e-22 1 No_clan
Cotton_A_25781_CDS 35 77 35 95 PF03105.19 SPX Domain 1 45 384 49.3 6.9e-13 1 No_clan
Cotton_A_25781_CDS 136 404 129 404 PF03105.19 SPX Domain 156 384 384 170.1 1.3e-49 1 No_clan
Cotton_A_25781_CDS 507 834 502 834 PF03124.14 EXS Family 8 331 331 286.0 4e-85 1 CL0182
Cotton_A_07552_CDS 40 236 40 243 PF00685.27 Sulfotransfer_1 Domain 1 207 267 161.4 2.8e-47 1 CL0023
Cotton_A_03343_CDS 61 301 60 302 PF00149.28 Metallophos Domain 2 203 204 58.2 1.5e-15 1 CL0163
Cotton_A_14974_CDS 24 334 24 337 PF00248.21 Aldo_ket_red Domain 1 290 294 256.3 3.2e-76 1 No_clan
Cotton_A_26541_CDS 29 134 28 134 PF13947.6 GUB_WAK_bind Domain 2 106 106 88.3 5e-25 1 No_clan
Cotton_A_26541_CDS 298 333 298 340 PF07645.15 EGF_CA Domain 1 35 42 33.2 4.4e-08 1 CL0001
Cotton_A_26541_CDS 431 696 431 699 PF00069.25 Pkinase Domain 1 258 264 143.5 7.7e-42 1 CL0016
Cotton_A_07084_CDS 86 261 81 263 PF00574.23 CLP_protease Domain 5 180 182 209.2 4.6e-62 1 CL0127
Cotton_A_20837_CDS 10 57 10 57 PF00319.18 SRF-TF Domain 1 48 48 92.5 7.7e-27 1 No_clan
Cotton_A_16006_CDS 246 301 246 302 PF03106.15 WRKY Domain 1 58 59 89.0 1.8e-25 1 CL0274
Cotton_A_16006_CDS 465 522 465 522 PF03106.15 WRKY Domain 1 59 59 85.5 2.1e-24 1 CL0274
Cotton_A_25932_CDS 186 232 185 233 PF13920.6 zf-C3HC4_3 Domain 3 49 50 62.3 2.8e-17 1 CL0229
Cotton_A_09295_CDS 81 104 79 105 PF01535.20 PPR Family 7 30 31 11.8 0.23 1 CL0020
Cotton_A_09295_CDS 141 190 141 190 PF13041.6 PPR_2 Repeat 1 50 50 64.9 5.5e-18 1 CL0020
Cotton_A_09295_CDS 208 239 207 240 PF12854.7 PPR_1 Repeat 2 33 34 27.1 2.4e-06 1 CL0020
Cotton_A_09295_CDS 242 272 242 273 PF12854.7 PPR_1 Repeat 1 31 34 40.1 2e-10 1 CL0020
Cotton_A_09295_CDS 281 330 281 330 PF13041.6 PPR_2 Repeat 1 50 50 61.4 6.9e-17 1 CL0020
Cotton_A_09295_CDS 347 379 347 380 PF12854.7 PPR_1 Repeat 1 33 34 35.3 6.9e-09 1 CL0020
Cotton_A_09295_CDS 386 433 386 435 PF13041.6 PPR_2 Repeat 1 48 50 52.7 3.5e-14 1 CL0020
Cotton_A_09295_CDS 456 505 456 505 PF13041.6 PPR_2 Repeat 1 50 50 55.6 4.5e-15 1 CL0020
Cotton_A_33785_CDS 93 168 93 172 PF00300.22 His_Phos_1 Domain 1 73 194 64.2 1.3e-17 1 CL0071
Cotton_A_33785_CDS 187 295 171 310 PF00300.22 His_Phos_1 Domain 68 171 194 55.4 6.3e-15 1 CL0071
Cotton_A_26508_CDS 83 519 83 519 PF01474.16 DAHP_synth_2 Domain 1 437 437 650.7 8e-196 1 CL0036
Cotton_A_34414_CDS 21 449 20 450 PF00501.28 AMP-binding Family 2 422 423 292.8 3.4e-87 1 CL0378
Cotton_A_34414_CDS 458 532 458 532 PF13193.6 AMP-binding_C Domain 1 76 76 82.5 3.3e-23 1 CL0531
Cotton_A_13092_CDS 25 153 12 154 PF00892.20 EamA Family 15 136 137 47.3 2.2e-12 1 CL0184
Cotton_A_13092_CDS 185 323 184 324 PF00892.20 EamA Family 2 136 137 50.5 2.4e-13 1 CL0184
Cotton_A_40505_CDS 22 73 20 78 PF00076.22 RRM_1 Domain 3 57 70 33.5 2.8e-08 1 CL0221
Cotton_A_40505_CDS 129 178 123 182 PF00076.22 RRM_1 Domain 14 66 70 20.9 0.00023 1 CL0221
Cotton_A_40505_CDS 243 321 236 323 PF11835.8 RRM_8 Domain 10 87 89 27.5 2.6e-06 1 CL0221
Cotton_A_10502_CDS 605 650 605 657 PF00005.27 ABC_tran Domain 1 46 137 28.2 2.2e-06 1 CL0023
Cotton_A_18586_CDS 74 236 74 261 PF03798.16 TRAM_LAG1_CLN8 Domain 1 159 198 117.6 5.8e-34 1 No_clan
Cotton_A_40199_CDS 165 219 160 219 PF04117.12 Mpv17_PMP22 Family 8 62 62 55.4 5.1e-15 1 No_clan
Cotton_A_08195_CDS 44 133 44 133 PF00447.17 HSF_DNA-bind Domain 1 96 96 104.5 3.5e-30 1 CL0123
Cotton_A_16414_CDS 1 253 1 254 PF03159.18 XRN_N Family 1 241 242 324.1 4.8e-97 1 CL0280
Cotton_A_16414_CDS 262 277 261 277 PF00098.23 zf-CCHC Domain 2 17 18 20.3 0.00041 1 CL0511
Cotton_A_16414_CDS 326 815 325 815 PF17846.1 XRN_M Domain 2 443 443 559.8 4.5e-168 1 No_clan
Cotton_A_17534_CDS 14 51 12 52 PF18511.1 F-box_5 Domain 4 41 42 29.7 3.6e-07 1 CL0271
Cotton_A_17037_CDS 98 356 97 356 PF05705.14 DUF829 Domain 2 241 241 193.9 3.8e-57 1 CL0028
Cotton_A_24770_CDS 55 166 55 166 PF04781.12 DUF627 Family 1 108 108 111.9 1.4e-32 1 No_clan
Cotton_A_24770_CDS 324 847 323 848 PF04780.12 DUF629 Family 2 493 494 629.1 4.6e-189 1 No_clan
Cotton_A_24770_CDS 1253 1581 1253 1582 PF00443.29 UCH Family 1 256 257 80.5 1.4e-22 1 CL0125
Cotton_A_00247_CDS 169 208 167 212 PF13920.6 zf-C3HC4_3 Domain 3 46 50 29.3 5.6e-07 1 CL0229
Cotton_A_11439_CDS 14 94 8 96 PF14368.6 LTP_2 Family 5 92 97 37.5 1.8e-09 1 CL0482
Cotton_A_36384_CDS 53 77 53 78 PF05678.14 VQ Motif 3 27 28 46.3 2.1e-12 1 No_clan
Cotton_A_24605_CDS 36 440 34 441 PF00860.20 Xan_ur_permease Family 3 388 389 225.7 7.4e-67 1 CL0062
Cotton_A_39513_CDS 111 194 109 197 PF00153.27 Mito_carr Family 4 93 97 69.3 2.1e-19 1 No_clan
Cotton_A_39513_CDS 204 291 202 293 PF00153.27 Mito_carr Family 3 95 97 81.7 2.7e-23 1 No_clan
Cotton_A_39513_CDS 298 390 296 391 PF00153.27 Mito_carr Family 3 96 97 83.7 6.6e-24 1 No_clan
Cotton_A_29399_CDS 129 319 120 321 PF01786.17 AOX Family 12 213 215 261.1 7.1e-78 1 CL0044
Cotton_A_10383_CDS 1 393 1 394 PF05633.11 BPS1 Family 1 387 388 579.4 3.3e-174 1 CL0133
Cotton_A_15114_CDS 89 133 88 133 PF13639.6 zf-RING_2 Domain 2 44 44 48.8 6.4e-13 1 CL0229
Cotton_A_00398_CDS 5 106 4 122 PF01412.18 ArfGap Domain 2 99 117 118.1 2.1e-34 1 No_clan
Cotton_A_17121_CDS 36 108 33 108 PF14144.6 DOG1 Family 4 77 77 54.5 9.8e-15 1 No_clan
Cotton_A_05765_CDS 1 127 1 128 PF03463.15 eRF1_1 Domain 1 128 129 163.9 1.7e-48 1 CL0267
Cotton_A_05765_CDS 136 267 135 267 PF03464.15 eRF1_2 Domain 2 133 133 109.4 1.5e-31 1 CL0267
Cotton_A_05765_CDS 271 369 270 369 PF03465.15 eRF1_3 Domain 2 113 113 93.4 1.2e-26 1 CL0101
Cotton_A_37937_CDS 50 109 28 111 PF00004.29 AAA Domain 67 130 132 42.2 9.8e-11 1 CL0023
Cotton_A_25393_CDS 68 248 67 248 PF09439.10 SRPRB Domain 2 181 181 129.6 8.4e-38 1 CL0023
Cotton_A_00379_CDS 125 249 114 252 PF07731.14 Cu-oxidase_2 Domain 8 134 137 133.6 3.8e-39 1 CL0026
Cotton_A_09096_CDS 20 128 20 131 PF00072.24 Response_reg Domain 1 109 112 84.8 4.5e-24 1 CL0304
Cotton_A_09096_CDS 201 249 201 251 PF00249.31 Myb_DNA-binding Domain 1 44 46 26.5 5.6e-06 1 CL0123
Cotton_A_23703_CDS 62 216 49 216 PF05562.11 WCOR413 Family 21 183 183 173.1 5.5e-51 1 No_clan
Cotton_A_13790_CDS 2 54 1 54 PF14416.6 PMR5N Domain 2 53 53 80.9 6.2e-23 1 No_clan
Cotton_A_13790_CDS 55 321 55 322 PF13839.6 PC-Esterase Family 1 282 283 293.1 2.7e-87 1 CL0264
Cotton_A_31941_CDS 72 170 71 170 PF01453.24 B_lectin Domain 2 105 105 96.4 1.3e-27 1 No_clan
Cotton_A_31941_CDS 211 310 202 311 PF00954.20 S_locus_glycop Domain 8 110 111 77.4 1.1e-21 1 No_clan
Cotton_A_31941_CDS 332 393 332 393 PF08276.11 PAN_2 Domain 1 67 67 54.1 1.2e-14 1 CL0168
Cotton_A_31941_CDS 469 737 468 737 PF07714.17 Pkinase_Tyr Domain 2 259 259 161.2 2.8e-47 1 CL0016
Cotton_A_13642_CDS 9 88 9 112 PF14226.6 DIOX_N Family 1 78 118 43.0 6.7e-11 1 CL0029
Cotton_A_13642_CDS 167 261 161 261 PF03171.20 2OG-FeII_Oxy Domain 6 101 101 56.7 2.6e-15 1 CL0029
Cotton_A_04758_CDS 12 159 2 161 PF14780.6 DUF4477 Family 40 188 190 30.7 2.1e-07 1 No_clan
Cotton_A_23284_CDS 71 163 71 163 PF01190.17 Pollen_Ole_e_I Family 1 99 99 62.4 4e-17 1 CL0287
Cotton_A_01230_CDS 56 610 56 611 PF02990.16 EMP70 Family 1 518 519 681.8 6e-205 1 No_clan
Cotton_A_32763_CDS 227 275 227 276 PF13041.6 PPR_2 Repeat 1 49 50 50.2 2.1e-13 1 CL0020
Cotton_A_32763_CDS 301 328 300 330 PF01535.20 PPR Family 2 29 31 11.1 0.38 1 CL0020
Cotton_A_32763_CDS 330 360 328 361 PF12854.7 PPR_1 Repeat 3 33 34 27.8 1.5e-06 1 CL0020
Cotton_A_07097_CDS 42 135 41 167 PF00561.20 Abhydrolase_1 Domain 2 107 257 41.7 1.1e-10 1 CL0028
Cotton_A_27784_CDS 2 74 1 102 PF00197.18 Kunitz_legume Domain 57 130 175 58.0 1.1e-15 1 CL0066
Cotton_A_22038_CDS 1 133 1 133 PF14009.6 DUF4228 Family 18 179 179 69.0 6.5e-19 1 No_clan
Cotton_A_34841_CDS 114 133 113 137 PF13202.6 EF-hand_5 Domain 2 21 25 13.3 0.045 1 CL0220
Cotton_A_34841_CDS 222 245 221 245 PF13202.6 EF-hand_5 Domain 2 25 25 26.5 2.9e-06 1 CL0220
Cotton_A_00720_CDS 69 159 43 160 PF00257.19 Dehydrin Family 74 161 164 52.0 1.1e-13 1 No_clan
Cotton_A_30392_CDS 331 472 330 472 PF04146.15 YTH Domain 2 166 166 137.4 4.2e-40 1 CL0178
Cotton_A_20098_CDS 20 97 20 98 PF10252.9 PP28 Domain 1 84 85 98.1 3e-28 1 No_clan
Cotton_A_23068_CDS 102 132 102 132 PF01535.20 PPR Family 1 31 31 27.2 2.7e-06 1 CL0020
Cotton_A_23068_CDS 134 183 134 183 PF13041.6 PPR_2 Repeat 1 50 50 61.0 9.1e-17 1 CL0020
Cotton_A_23068_CDS 204 253 204 253 PF13041.6 PPR_2 Repeat 1 50 50 65.7 3e-18 1 CL0020
Cotton_A_23068_CDS 274 323 274 323 PF13041.6 PPR_2 Repeat 1 50 50 57.6 1e-15 1 CL0020
Cotton_A_23068_CDS 341 362 340 364 PF12854.7 PPR_1 Repeat 2 23 34 35.2 7e-09 1 CL0020
Cotton_A_02934_CDS 194 402 192 403 PF00337.22 Gal-bind_lectin Domain 3 133 134 163.3 2e-48 1 CL0004
Cotton_A_02934_CDS 450 630 449 637 PF01762.21 Galactosyl_T Family 2 187 195 116.3 1.5e-33 1 CL0110
Cotton_A_10165_CDS 63 198 63 205 PF05577.12 Peptidase_S28 Domain 1 126 434 113.1 1.4e-32 1 CL0028
Cotton_A_10165_CDS 226 521 223 522 PF05577.12 Peptidase_S28 Domain 124 433 434 139.5 1.3e-40 1 CL0028
Cotton_A_28851_CDS 27 271 27 271 PF06813.13 Nodulin-like Family 1 250 250 309.3 1.9e-92 1 CL0015
Cotton_A_36618_CDS 173 228 173 228 PF02045.15 CBFB_NFYA Family 1 56 56 92.7 1.5e-26 1 No_clan
Cotton_A_35185_CDS 20 455 8 457 PF02458.15 Transferase Family 15 432 434 127.7 4.6e-37 1 CL0149
Cotton_A_09573_CDS 17 113 17 113 PF00428.19 Ribosomal_60s Family 1 88 88 82.6 2.2e-23 1 No_clan
Cotton_A_30192_CDS 66 263 61 268 PF04045.14 P34-Arc Family 15 213 240 143.9 6.5e-42 1 No_clan
Cotton_A_13595_CDS 335 379 335 379 PF13639.6 zf-RING_2 Domain 1 44 44 29.6 6.2e-07 1 CL0229
Cotton_A_13595_CDS 550 586 548 586 PF02845.16 CUE Family 4 41 42 29.6 4e-07 1 CL0214
Cotton_A_12136_CDS 53 190 16 191 PF00685.27 Sulfotransfer_1 Domain 142 266 267 100.9 7.9e-29 1 CL0023
Cotton_A_31019_CDS 235 286 235 286 PF00249.31 Myb_DNA-binding Domain 1 46 46 25.7 9.4e-06 1 CL0123
Cotton_A_10151_CDS 86 230 85 230 PF00210.24 Ferritin Domain 2 142 142 115.3 2e-33 1 CL0044
Cotton_A_39529_CDS 26 194 26 194 PF14215.6 bHLH-MYC_N Family 1 175 175 174.7 2.1e-51 1 CL0161
Cotton_A_39529_CDS 296 341 295 342 PF00010.26 HLH Domain 4 52 53 40.0 2.7e-10 1 No_clan
Cotton_A_10653_CDS 19 137 14 148 PF04857.20 CAF1 Family 6 125 319 33.7 2.2e-08 1 CL0219
Cotton_A_04853_CDS 8 74 5 75 PF03083.16 MtN3_slv Family 21 86 87 76.5 1.2e-21 1 CL0141
Cotton_A_31081_CDS 71 132 63 132 PF05498.11 RALF Family 9 65 65 76.1 3.1e-21 1 No_clan
Cotton_A_30774_CDS 32 78 30 90 PF04043.15 PMEI Domain 3 50 154 31.1 2.7e-07 1 No_clan
Cotton_A_12764_CDS 312 370 310 375 PF07714.17 Pkinase_Tyr Domain 3 67 259 23.8 2.3e-05 1 CL0016
Cotton_A_12764_CDS 376 550 372 552 PF00069.25 Pkinase Domain 94 259 264 82.7 2.7e-23 1 CL0016
Cotton_A_22945_CDS 8 119 1 119 PF13456.6 RVT_3 Domain 12 124 124 41.9 7.8e-11 1 CL0219
Cotton_A_17673_CDS 3 336 3 336 PF12819.7 Malectin_like Domain 1 336 336 227.7 2.1e-67 1 CL0202
Cotton_A_17673_CDS 412 471 411 471 PF13855.6 LRR_8 Repeat 2 61 61 39.8 2.9e-10 1 CL0022
Cotton_A_34019_CDS 48 116 1 125 PF00201.18 UDPGT Family 323 388 499 51.7 6.3e-14 1 CL0113
Cotton_A_12318_CDS 1 100 1 101 PF01775.17 Ribosomal_L18A Domain 24 120 121 152.2 6.1e-45 1 No_clan
Cotton_A_09990_CDS 9 334 9 335 PF16363.5 GDP_Man_Dehyd Domain 1 331 332 225.8 9.2e-67 1 CL0063
Cotton_A_37576_CDS 28 100 28 114 PF01190.17 Pollen_Ole_e_I Family 1 83 99 42.2 8e-11 1 CL0287
Cotton_A_10488_CDS 16 308 14 320 PF00899.21 ThiF Domain 33 219 244 67.7 9.6e-19 1 CL0063
Cotton_A_10488_CDS 123 181 112 181 PF16190.5 E1_FCCH Domain 14 71 71 66.7 1.6e-18 1 No_clan
Cotton_A_10488_CDS 182 251 182 251 PF16191.5 E1_4HB Domain 1 70 70 75.4 3e-21 1 No_clan
Cotton_A_10488_CDS 333 831 333 836 PF00899.21 ThiF Domain 1 238 244 231.7 7.8e-69 1 CL0063
Cotton_A_10488_CDS 520 772 520 772 PF10585.9 UBA_e1_thiolCys Domain 1 252 252 262.4 5.6e-78 1 No_clan
Cotton_A_10488_CDS 843 932 843 932 PF09358.10 E1_UFD Domain 1 93 93 67.7 1.1e-18 1 No_clan
Cotton_A_08026_CDS 115 206 113 208 PF01248.26 Ribosomal_L7Ae Domain 3 93 95 85.8 1.2e-24 1 CL0101
Cotton_A_29091_CDS 5 71 2 80 PF13456.6 RVT_3 Domain 15 81 124 30.5 2.6e-07 1 CL0219
Cotton_A_03944_CDS 64 402 61 404 PF01094.28 ANF_receptor Family 4 352 354 148.2 3.1e-43 1 CL0144
Cotton_A_03944_CDS 485 799 479 800 PF00497.20 SBP_bac_3 Domain 16 224 225 82.0 4.1e-23 1 CL0177
Cotton_A_03944_CDS 580 830 580 832 PF00060.26 Lig_chan Family 1 147 149 108.3 2.9e-31 1 CL0030
Cotton_A_00425_CDS 24 100 24 101 PF13417.6 GST_N_3 Domain 1 74 75 77.2 9.6e-22 1 CL0172
Cotton_A_00425_CDS 117 201 111 213 PF16865.5 GST_C_5 Domain 11 96 108 42.6 7.2e-11 1 CL0497
Cotton_A_15491_CDS 202 534 202 535 PF01501.20 Glyco_transf_8 Family 1 255 256 289.9 1.8e-86 1 CL0110
Cotton_A_17058_CDS 456 489 449 490 PF00400.32 WD40 Repeat 7 37 38 19.7 0.0011 1 CL0186
Cotton_A_17058_CDS 918 951 913 951 PF00400.32 WD40 Repeat 6 38 38 18.1 0.0036 1 CL0186
Cotton_A_12066_CDS 84 291 84 291 PF14681.6 UPRTase Domain 1 207 207 219.1 4.2e-65 1 CL0533
Cotton_A_13649_CDS 9 90 9 108 PF14226.6 DIOX_N Family 1 80 118 34.5 2.9e-08 1 CL0029
Cotton_A_13649_CDS 165 261 161 261 PF03171.20 2OG-FeII_Oxy Domain 4 101 101 70.1 1.8e-19 1 CL0029
Cotton_A_35229_CDS 49 87 48 88 PF08263.12 LRRNT_2 Family 2 40 41 41.5 1.2e-10 1 No_clan
Cotton_A_35229_CDS 720 945 718 1025 PF00069.25 Pkinase Domain 3 205 264 137.9 4e-40 1 CL0016
Cotton_A_34809_CDS 78 252 78 254 PF06026.14 Rib_5-P_isom_A Family 1 171 173 212.7 2.7e-63 1 CL0246
Cotton_A_12360_CDS 32 95 31 103 PF00717.23 Peptidase_S24 Domain 4 61 70 44.0 1.6e-11 1 CL0299
Cotton_A_04728_CDS 50 163 27 164 PF01161.20 PBP Domain 12 131 132 70.4 1.7e-19 1 No_clan
Cotton_A_25194_CDS 93 119 86 120 PF00400.32 WD40 Repeat 8 37 38 12.8 0.17 1 CL0186
Cotton_A_25194_CDS 339 369 331 370 PF00400.32 WD40 Repeat 8 37 38 30.1 5.7e-07 1 CL0186
Cotton_A_25194_CDS 376 412 374 412 PF00400.32 WD40 Repeat 3 38 38 22.2 0.00018 1 CL0186
Cotton_A_25194_CDS 463 498 460 498 PF00400.32 WD40 Repeat 4 38 38 31.7 1.8e-07 1 CL0186
Cotton_A_25194_CDS 512 540 505 540 PF00400.32 WD40 Repeat 9 38 38 15.1 0.033 1 CL0186
Cotton_A_25194_CDS 743 848 743 848 PF04003.12 Utp12 Family 1 107 107 94.5 4.4e-27 1 No_clan
Cotton_A_15613_CDS 95 518 95 519 PF00854.21 PTR2 Family 1 394 395 370.2 1.1e-110 1 CL0015
Cotton_A_38040_CDS 33 111 32 112 PF13774.6 Longin Domain 2 83 84 80.0 9.9e-23 1 No_clan
Cotton_A_38040_CDS 129 214 127 215 PF00957.21 Synaptobrevin Family 3 88 89 117.7 1.4e-34 1 CL0445
Cotton_A_39585_CDS 512 580 510 581 PF13320.6 DUF4091 Family 3 65 66 61.1 8.4e-17 1 No_clan
Cotton_A_26935_CDS 2 101 2 104 PF03195.14 LOB Family 1 95 99 84.1 8.2e-24 1 No_clan
Cotton_A_33489_CDS 66 154 63 154 PF04576.15 Zein-binding Family 4 92 92 109.6 6.9e-32 1 No_clan
Cotton_A_27599_CDS 135 285 134 289 PF00484.19 Pro_CA Domain 2 151 156 141.3 3e-41 1 No_clan
Cotton_A_26249_CDS 485 615 485 615 PF12576.8 DUF3754 Family 1 137 137 112.4 1.5e-32 1 No_clan
Cotton_A_15044_CDS 3 211 3 212 PF00091.25 Tubulin Domain 1 196 197 235.2 7.3e-70 1 CL0566
Cotton_A_23720_CDS 38 490 38 497 PF00067.22 p450 Domain 1 455 463 388.4 4.2e-116 1 No_clan
Cotton_A_19540_CDS 2148 2540 2148 2541 PF12166.8 Piezo_RRas_bdg Family 1 424 425 369.2 3.5e-110 1 No_clan
Cotton_A_39107_CDS 3 49 2 56 PF03868.15 Ribosomal_L6e_N Domain 2 46 60 51.8 7.3e-14 1 No_clan
Cotton_A_30837_CDS 135 271 130 271 PF04116.13 FA_hydroxylase Family 6 133 133 71.9 6.2e-20 1 No_clan
Cotton_A_30837_CDS 440 603 440 603 PF12076.8 Wax2_C Domain 1 164 164 247.4 5.1e-74 1 No_clan
Cotton_A_16306_CDS 23 108 22 108 PF17032.5 zinc_ribbon_15 Domain 2 86 86 82.4 3e-23 1 CL0167
Cotton_A_00861_CDS 75 151 74 151 PF04640.14 PLATZ Family 2 82 82 98.4 2.8e-28 1 No_clan
Cotton_A_12656_CDS 1 251 1 252 PF05742.12 TANGO2 Family 1 252 253 229.6 6.2e-68 1 No_clan
Cotton_A_32333_CDS 94 164 94 172 PF03061.22 4HBT Domain 1 71 79 42.4 6.8e-11 1 CL0050
Cotton_A_00870_CDS 371 926 371 926 PF05183.12 RdRP Family 1 586 586 631.6 1.4e-189 1 No_clan
Cotton_A_02674_CDS 85 164 69 164 PF17900.1 Peptidase_M1_N Domain 106 186 186 96.0 3e-27 1 CL0672
Cotton_A_02674_CDS 199 415 199 415 PF01433.20 Peptidase_M1 Domain 1 218 218 264.7 5.7e-79 1 CL0126
Cotton_A_02674_CDS 499 784 499 787 PF11838.8 ERAP1_C Domain 1 279 315 200.4 5.1e-59 1 CL0159
Cotton_A_28154_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 59.1 3.6e-16 1 CL0123
Cotton_A_28154_CDS 67 111 67 112 PF00249.31 Myb_DNA-binding Domain 1 45 46 51.7 7.3e-14 1 CL0123
Cotton_A_19380_CDS 295 602 295 603 PF02536.14 mTERF Family 1 313 314 231.7 9.4e-69 1 No_clan
Cotton_A_24773_CDS 8 260 8 263 PF06813.13 Nodulin-like Family 1 247 250 207.8 1.8e-61 1 CL0015
Cotton_A_29629_CDS 37 298 37 314 PF00657.22 Lipase_GDSL Family 2 179 200 52.5 5.9e-14 1 CL0264
Cotton_A_22713_CDS 92 374 91 374 PF00696.28 AA_kinase Family 2 241 241 166.0 1e-48 1 No_clan
Cotton_A_22421_CDS 66 310 65 313 PF00291.25 PALP Family 40 289 294 180.0 6.6e-53 1 CL0063
Cotton_A_11798_CDS 47 118 17 119 PF05916.11 Sld5 Family 30 108 109 25.9 1e-05 1 No_clan
Cotton_A_01929_CDS 267 314 258 319 PF00571.28 CBS Domain 6 51 57 35.2 1.3e-08 1 No_clan
Cotton_A_01929_CDS 356 403 346 404 PF00571.28 CBS Domain 9 56 57 48.1 1.1e-12 1 No_clan
Cotton_A_00001_CDS 71 257 71 259 PF00504.21 Chloroa_b-bind Family 1 151 161 148.1 3e-43 1 No_clan
Cotton_A_12116_CDS 180 266 179 267 PF13813.6 MBOAT_2 Family 2 82 83 63.0 2.4e-17 1 CL0517
Cotton_A_38078_CDS 23 97 18 97 PF03951.19 Gln-synt_N Domain 7 83 83 39.4 3.8e-10 1 No_clan
Cotton_A_38078_CDS 126 347 107 352 PF00120.24 Gln-synt_C Domain 24 257 345 57.2 1.3e-15 1 CL0286
Cotton_A_26926_CDS 38 80 38 80 PF08127.13 Propeptide_C1 Motif 1 40 40 47.4 1.3e-12 1 No_clan
Cotton_A_26926_CDS 121 308 99 309 PF00112.23 Peptidase_C1 Domain 46 217 218 162.3 1.7e-47 1 CL0125
Cotton_A_32477_CDS 4 203 4 204 PF01912.18 eIF-6 Family 1 196 197 269.6 1.2e-80 1 CL0197
Cotton_A_19306_CDS 25 67 24 67 PF08263.12 LRRNT_2 Family 2 41 41 22.7 9.2e-05 1 No_clan
Cotton_A_19306_CDS 326 583 314 583 PF07714.17 Pkinase_Tyr Domain 30 259 259 105.9 2.1e-30 1 CL0016
Cotton_A_22774_CDS 14 175 6 175 PF01397.21 Terpene_synth Domain 23 192 192 162.7 7.6e-48 1 No_clan
Cotton_A_22774_CDS 206 251 206 252 PF03936.16 Terpene_synth_C Domain 1 46 267 45.0 8.6e-12 1 CL0613
Cotton_A_10611_CDS 1 164 1 167 PF00582.26 Usp Domain 6 138 141 46.7 4.5e-12 1 CL0039
Cotton_A_34622_CDS 228 515 228 515 PF03000.14 NPH3 Family 1 258 258 360.6 5e-108 1 No_clan
Cotton_A_31762_CDS 72 129 72 131 PF07939.11 DUF1685 Family 1 59 60 90.9 3.1e-26 1 No_clan
Cotton_A_31667_CDS 48 146 46 148 PF00169.29 PH Domain 3 102 105 28.8 1.3e-06 1 CL0266
Cotton_A_21123_CDS 24 97 22 100 PF09279.11 EF-hand_like Domain 10 80 86 25.2 1.8e-05 1 CL0220
Cotton_A_21123_CDS 110 252 110 253 PF00388.19 PI-PLC-X Family 1 144 145 166.5 2.7e-49 1 CL0384
Cotton_A_21123_CDS 355 441 331 441 PF00387.19 PI-PLC-Y Family 28 115 115 96.6 1.1e-27 1 CL0384
Cotton_A_21123_CDS 464 565 461 573 PF00168.30 C2 Domain 3 94 103 41.8 1e-10 1 CL0154
Cotton_A_12664_CDS 47 211 41 221 PF00724.20 Oxidored_FMN Domain 63 223 342 190.7 4.1e-56 1 CL0036
Cotton_A_30841_CDS 81 197 81 197 PF13793.6 Pribosyltran_N Domain 1 116 116 169.0 3.1e-50 1 CL0533
Cotton_A_30841_CDS 283 385 274 388 PF14572.6 Pribosyl_synth Domain 75 178 184 78.4 6.6e-22 1 CL0533
Cotton_A_21716_CDS 103 127 102 128 PF13912.6 zf-C2H2_6 Domain 2 26 27 51.4 7.2e-14 1 CL0361
Cotton_A_21716_CDS 156 180 156 182 PF13912.6 zf-C2H2_6 Domain 1 25 27 45.3 5.7e-12 1 CL0361
Cotton_A_04280_CDS 68 95 68 95 PF00642.24 zf-CCCH Family 1 27 27 26.5 4.3e-06 1 CL0537
Cotton_A_04280_CDS 163 223 162 223 PF00076.22 RRM_1 Domain 6 70 70 26.2 5.3e-06 1 CL0221
Cotton_A_04280_CDS 591 649 586 708 PF13847.6 Methyltransf_31 Domain 7 67 152 36.8 3.1e-09 1 CL0063
Cotton_A_04168_CDS 15 450 9 451 PF02458.15 Transferase Family 7 433 434 292.5 4.6e-87 1 CL0149
Cotton_A_18235_CDS 227 267 226 271 PF13920.6 zf-C3HC4_3 Domain 2 46 50 27.6 2e-06 1 CL0229
Cotton_A_29605_CDS 61 240 61 241 PF05911.11 FPP Coiled-coil 1 202 867 169.2 1.4e-49 1 No_clan
Cotton_A_29605_CDS 239 586 238 589 PF05911.11 FPP Coiled-coil 271 640 867 177.2 5.1e-52 1 No_clan
Cotton_A_29605_CDS 592 765 587 766 PF05911.11 FPP Coiled-coil 693 866 867 180.2 6.3e-53 1 No_clan
Cotton_A_08153_CDS 149 172 147 172 PF13202.6 EF-hand_5 Domain 2 25 25 22.4 6e-05 1 CL0220
Cotton_A_18416_CDS 51 99 51 104 PF14547.6 Hydrophob_seed Domain 1 49 85 52.7 3.6e-14 1 CL0482
Cotton_A_04791_CDS 67 141 66 142 PF01253.22 SUI1 Domain 2 76 77 84.4 5.7e-24 1 No_clan
Cotton_A_38293_CDS 170 388 155 390 PF00931.22 NB-ARC Domain 21 250 252 163.5 4.9e-48 1 CL0023
Cotton_A_22550_CDS 14 94 4 96 PF00125.24 Histone Domain 48 129 131 54.1 2e-14 1 CL0012
Cotton_A_22550_CDS 97 130 97 131 PF16211.5 Histone_H2A_C Family 1 34 35 68.6 2.6e-19 1 No_clan
Cotton_A_16299_CDS 88 199 85 208 PF00141.23 peroxidase Domain 2 109 229 77.8 9.8e-22 1 CL0617
Cotton_A_06814_CDS 1 102 1 106 PF04825.13 Rad21_Rec8_N Family 1 105 110 112.6 1e-32 1 No_clan
Cotton_A_06814_CDS 588 637 584 637 PF04824.16 Rad21_Rec8 Family 6 55 55 64.0 5.3e-18 1 CL0157
Cotton_A_01693_CDS 56 115 55 129 PF00717.23 Peptidase_S24 Domain 3 55 70 22.8 6.5e-05 1 CL0299
Cotton_A_26500_CDS 65 443 24 453 PF00201.18 UDPGT Family 49 412 499 108.0 5.2e-31 1 CL0113
Cotton_A_11916_CDS 92 383 92 384 PF07887.11 Calmodulin_bind Family 1 291 292 415.0 1.5e-124 1 No_clan
Cotton_A_37439_CDS 13 93 4 102 PF03291.16 Pox_MCEL Family 109 189 333 32.7 4.1e-08 1 CL0063
Cotton_A_02057_CDS 157 184 154 184 PF01535.20 PPR Family 4 31 31 18.5 0.0016 1 CL0020
Cotton_A_02057_CDS 186 235 186 235 PF13041.6 PPR_2 Repeat 1 50 50 46.2 3.8e-12 1 CL0020
Cotton_A_02057_CDS 256 305 256 305 PF13041.6 PPR_2 Repeat 1 50 50 68.3 4.6e-19 1 CL0020
Cotton_A_02057_CDS 326 373 326 375 PF13041.6 PPR_2 Repeat 1 48 50 55.9 3.6e-15 1 CL0020
Cotton_A_02057_CDS 392 424 392 425 PF12854.7 PPR_1 Repeat 1 33 34 41.4 8e-11 1 CL0020
Cotton_A_02057_CDS 462 494 462 495 PF12854.7 PPR_1 Repeat 1 33 34 29.9 3.3e-07 1 CL0020
Cotton_A_02057_CDS 501 545 501 545 PF13041.6 PPR_2 Repeat 1 45 50 66.5 1.8e-18 1 CL0020
Cotton_A_02057_CDS 572 618 571 620 PF13041.6 PPR_2 Repeat 2 48 50 47.2 1.9e-12 1 CL0020
Cotton_A_08198_CDS 14 87 14 87 PF07765.12 KIP1 Family 1 74 74 125.7 5.8e-37 1 No_clan
Cotton_A_20027_CDS 6 66 5 70 PF03931.15 Skp1_POZ Domain 2 59 63 36.7 3.4e-09 1 CL0033
Cotton_A_14991_CDS 19 339 18 339 PF05910.12 DUF868 Family 2 279 279 262.1 7.1e-78 1 No_clan
Cotton_A_07449_CDS 153 256 150 258 PF00651.31 BTB Domain 4 109 111 80.7 8.7e-23 1 CL0033
Cotton_A_36370_CDS 106 168 105 168 PF12738.7 PTCB-BRCT Family 2 63 63 27.4 2.3e-06 1 CL0459
Cotton_A_36370_CDS 192 253 192 253 PF12738.7 PTCB-BRCT Family 1 63 63 69.1 2.4e-19 1 CL0459
Cotton_A_36370_CDS 376 452 374 452 PF00533.26 BRCT Family 3 78 79 26.7 5.5e-06 1 CL0459
Cotton_A_36370_CDS 567 649 566 652 PF16589.5 BRCT_2 Family 2 82 85 29.5 7.2e-07 1 CL0459
Cotton_A_36370_CDS 670 731 669 731 PF12738.7 PTCB-BRCT Family 2 63 63 72.5 2e-20 1 CL0459
Cotton_A_03802_CDS 2 188 1 197 PF00067.22 p450 Domain 270 454 463 195.3 1.7e-57 1 No_clan
Cotton_A_01843_CDS 29 465 28 466 PF00450.22 Peptidase_S10 Domain 2 418 419 400.9 9e-120 1 CL0028
Cotton_A_35713_CDS 10 73 8 74 PF00076.22 RRM_1 Domain 3 69 70 30.0 3.2e-07 1 CL0221
Cotton_A_09000_CDS 18 317 18 317 PF05623.12 DUF789 Family 1 294 294 279.6 3.6e-83 1 No_clan
Cotton_A_03334_CDS 161 279 161 280 PF09335.11 SNARE_assoc Family 1 119 120 82.9 2.4e-23 1 No_clan
Cotton_A_13830_CDS 100 169 100 169 PF00462.24 Glutaredoxin Domain 1 60 60 43.0 4e-11 1 CL0172
Cotton_A_10201_CDS 136 294 136 295 PF00484.19 Pro_CA Domain 1 155 156 139.6 1e-40 1 No_clan
Cotton_A_28245_CDS 9 187 4 200 PF08626.11 TRAPPC9-Trs120 Family 6 181 1226 61.7 2.3e-17 1 No_clan
Cotton_A_28245_CDS 199 271 183 287 PF08626.11 TRAPPC9-Trs120 Family 240 313 1226 42.1 1.9e-11 1 No_clan
Cotton_A_28245_CDS 329 774 280 789 PF08626.11 TRAPPC9-Trs120 Family 438 862 1226 106.2 8.7e-31 1 No_clan
Cotton_A_18629_CDS 26 59 26 59 PF02375.17 JmjN Family 1 34 34 51.6 6.4e-14 1 CL0029
Cotton_A_18629_CDS 233 269 233 272 PF02373.22 JmjC Domain 1 37 114 40.5 3e-10 1 CL0029
Cotton_A_18629_CDS 272 325 268 326 PF02373.22 JmjC Domain 60 113 114 56.9 2.5e-15 1 CL0029
Cotton_A_06937_CDS 58 278 33 286 PF00481.21 PP2C Family 30 251 258 104.2 8.5e-30 1 CL0238
Cotton_A_06954_CDS 492 567 489 574 PF03763.13 Remorin_C Family 21 96 107 88.6 2.3e-25 1 No_clan
Cotton_A_09012_CDS 199 575 198 575 PF00368.18 HMG-CoA_red Family 2 367 367 485.8 7.8e-146 1 No_clan
Cotton_A_10800_CDS 15 97 4 106 PF02362.21 B3 Family 14 92 101 37.2 2e-09 1 CL0405
Cotton_A_04063_CDS 92 116 89 118 PF01535.20 PPR Family 4 28 31 19.8 0.00066 1 CL0020
Cotton_A_04063_CDS 123 169 122 170 PF13041.6 PPR_2 Repeat 2 48 50 36.8 3.3e-09 1 CL0020
Cotton_A_04063_CDS 223 252 223 253 PF01535.20 PPR Family 1 30 31 18.3 0.0019 1 CL0020
Cotton_A_04063_CDS 294 323 293 323 PF01535.20 PPR Family 2 31 31 18.6 0.0015 1 CL0020
Cotton_A_04063_CDS 326 350 324 354 PF01535.20 PPR Family 3 27 31 10.6 0.56 1 CL0020
Cotton_A_04063_CDS 422 470 422 471 PF13041.6 PPR_2 Repeat 1 48 50 37.9 1.5e-09 1 CL0020
Cotton_A_04063_CDS 524 571 524 573 PF13041.6 PPR_2 Repeat 1 48 50 36.9 3.1e-09 1 CL0020
Cotton_A_04063_CDS 625 672 625 674 PF13041.6 PPR_2 Repeat 1 48 50 54.7 8.7e-15 1 CL0020
Cotton_A_22001_CDS 197 249 197 249 PF11250.8 FAF Family 1 54 54 72.5 2.5e-20 1 No_clan
Cotton_A_21685_CDS 23 51 22 84 PF16363.5 GDP_Man_Dehyd Domain 2 30 332 32.2 7.3e-08 1 CL0063
Cotton_A_33275_CDS 144 186 139 186 PF00010.26 HLH Domain 8 53 53 31.4 1.3e-07 1 No_clan
Cotton_A_36866_CDS 24 62 24 62 PF00187.19 Chitin_bind_1 Domain 1 38 38 50.0 3e-13 1 No_clan
Cotton_A_36866_CDS 77 308 77 308 PF00182.19 Glyco_hydro_19 Domain 1 232 232 402.6 6.3e-121 1 CL0037
Cotton_A_06329_CDS 50 107 48 107 PF13691.6 Lactamase_B_4 Domain 3 63 63 48.7 4.4e-13 1 CL0381
Cotton_A_06329_CDS 465 665 464 665 PF12706.7 Lactamase_B_2 Domain 3 201 201 27.7 1.7e-06 1 CL0381
Cotton_A_14963_CDS 74 183 74 188 PF01397.21 Terpene_synth Domain 1 123 192 78.5 5.3e-22 1 No_clan
Cotton_A_14963_CDS 218 482 218 483 PF03936.16 Terpene_synth_C Domain 1 266 267 340.5 6.3e-102 1 CL0613
Cotton_A_11806_CDS 105 165 51 176 PF01215.19 COX5B Domain 64 123 129 49.2 3.9e-13 1 CL0045
Cotton_A_02612_CDS 16 46 13 47 PF02037.27 SAP Family 4 34 35 32.3 5.7e-08 1 CL0306
Cotton_A_02612_CDS 361 400 361 403 PF02891.20 zf-MIZ Domain 1 40 50 44.8 7.3e-12 1 CL0229
Cotton_A_22853_CDS 39 63 38 67 PF01535.20 PPR Family 2 26 31 13.1 0.085 1 CL0020
Cotton_A_22853_CDS 141 165 140 166 PF01535.20 PPR Family 5 29 31 14.8 0.026 1 CL0020
Cotton_A_22853_CDS 168 198 168 198 PF01535.20 PPR Family 1 31 31 13.8 0.053 1 CL0020
Cotton_A_22853_CDS 241 262 241 262 PF01535.20 PPR Family 4 25 31 15.7 0.013 1 CL0020
Cotton_A_22853_CDS 268 314 267 316 PF13041.6 PPR_2 Repeat 2 48 50 34.4 1.8e-08 1 CL0020
Cotton_A_22853_CDS 342 362 341 366 PF01535.20 PPR Family 2 22 31 15.0 0.021 1 CL0020
Cotton_A_22853_CDS 442 566 441 567 PF14432.6 DYW_deaminase Family 2 126 127 131.3 1.7e-38 1 CL0109
Cotton_A_09525_CDS 45 121 44 121 PF05641.12 Agenet Domain 2 61 61 46.7 3.4e-12 1 CL0049
Cotton_A_09525_CDS 847 918 845 918 PF16135.5 Jas Family 3 76 76 66.1 2.3e-18 1 No_clan
Cotton_A_09525_CDS 960 1002 960 1003 PF00628.29 PHD Domain 1 51 52 29.7 4.4e-07 1 CL0390
Cotton_A_14440_CDS 3 392 1 392 PF00083.24 Sugar_tr Family 66 452 452 362.5 3.2e-108 1 CL0015
Cotton_A_34253_CDS 4 117 2 124 PF01582.20 TIR Family 31 139 176 109.7 1.4e-31 1 CL0173
Cotton_A_12892_CDS 9 188 9 202 PF03153.13 TFIIA Family 1 160 415 51.0 2.2e-13 1 No_clan
Cotton_A_12892_CDS 210 386 175 387 PF03153.13 TFIIA Family 309 410 415 97.6 1.5e-27 1 No_clan
Cotton_A_40200_CDS 5 38 1 45 PF17919.1 RT_RNaseH_2 Domain 56 89 100 31.4 1.4e-07 1 CL0219
Cotton_A_07750_CDS 44 495 38 510 PF00067.22 p450 Domain 8 446 463 251.5 1.4e-74 1 No_clan
Cotton_A_25994_CDS 8 35 8 43 PF13405.6 EF-hand_6 Domain 1 28 31 23.3 3.7e-05 1 CL0220
Cotton_A_25994_CDS 86 147 84 148 PF13499.6 EF-hand_7 Domain 3 70 71 59.4 3.5e-16 1 CL0220
Cotton_A_06769_CDS 78 363 78 363 PF13292.6 DXP_synthase_N Family 1 273 273 360.7 4.1e-108 1 CL0254
Cotton_A_06769_CDS 400 561 398 563 PF02779.24 Transket_pyr Domain 3 174 178 139.1 1.2e-40 1 CL0254
Cotton_A_06769_CDS 579 703 579 703 PF02780.20 Transketolase_C Domain 1 124 124 94.5 4.3e-27 1 CL0591
Cotton_A_03764_CDS 80 471 80 471 PF01266.24 DAO Domain 1 352 352 188.1 3.2e-55 1 CL0063
Cotton_A_37242_CDS 113 407 108 407 PF04765.13 DUF616 Family 16 314 314 367.6 5.2e-110 1 No_clan
Cotton_A_33205_CDS 89 133 88 133 PF13639.6 zf-RING_2 Domain 2 44 44 48.9 6e-13 1 CL0229
Cotton_A_00233_CDS 308 356 308 356 PF14604.6 SH3_9 Domain 1 49 49 49.2 3.5e-13 1 CL0010
Cotton_A_03891_CDS 443 627 443 628 PF00488.21 MutS_V Domain 1 187 188 116.8 1.2e-33 1 CL0023
Cotton_A_03891_CDS 856 926 856 927 PF01713.21 Smr Family 1 77 80 34.7 1.6e-08 1 No_clan
Cotton_A_20297_CDS 105 383 99 389 PF03151.16 TPT Family 11 283 290 45.4 6.3e-12 1 CL0184
Cotton_A_40273_CDS 77 191 69 197 PF00190.22 Cupin_1 Domain 19 136 151 75.9 2.4e-21 1 CL0029
Cotton_A_23982_CDS 16 291 8 297 PF00294.24 PfkB Family 36 296 302 116.9 1.1e-33 1 CL0118
Cotton_A_09196_CDS 7 36 7 41 PF09429.10 Wbp11 Family 1 30 78 30.1 4.6e-07 1 No_clan
Cotton_A_12101_CDS 124 494 124 494 PF03514.14 GRAS Family 1 374 374 443.1 7.2e-133 1 CL0063
Cotton_A_36003_CDS 1 142 1 142 PF04601.13 DUF569 Domain 1 142 142 216.3 1.2e-64 1 CL0066
Cotton_A_28399_CDS 10 58 5 68 PF00403.26 HMA Domain 6 50 62 28.5 1.5e-06 1 No_clan
Cotton_A_18523_CDS 29 83 29 83 PF01667.17 Ribosomal_S27e Family 1 55 55 92.3 1.1e-26 1 CL0167
Cotton_A_02974_CDS 81 140 80 140 PF02427.17 PSI_PsaE Domain 2 60 60 101.2 1.7e-29 1 CL0610
Cotton_A_36792_CDS 113 138 113 139 PF13912.6 zf-C2H2_6 Domain 1 26 27 48.3 6.5e-13 1 CL0361
Cotton_A_36792_CDS 197 221 196 222 PF13912.6 zf-C2H2_6 Domain 2 26 27 40.0 2.6e-10 1 CL0361
Cotton_A_20747_CDS 107 587 107 587 PF03372.23 Exo_endo_phos Domain 1 233 233 43.0 3.6e-11 1 CL0530
Cotton_A_07224_CDS 39 281 39 288 PF00520.31 Ion_trans Family 1 237 245 103.4 1.1e-29 1 CL0030
Cotton_A_07224_CDS 379 463 377 464 PF00027.29 cNMP_binding Domain 3 88 89 48.1 9.3e-13 1 CL0029
Cotton_A_07224_CDS 550 618 549 618 PF11834.8 KHA Family 2 67 67 71.3 5.1e-20 1 No_clan
Cotton_A_27664_CDS 138 183 138 184 PF00249.31 Myb_DNA-binding Domain 1 45 46 54.6 8.8e-15 1 CL0123
Cotton_A_27664_CDS 190 233 190 235 PF00249.31 Myb_DNA-binding Domain 1 44 46 56.7 2e-15 1 CL0123
Cotton_A_11350_CDS 7 143 3 143 PF04535.12 DUF588 Domain 5 150 150 134.7 2.1e-39 1 CL0396
Cotton_A_09365_CDS 14 552 14 552 PF01593.24 Amino_oxidase Domain 1 452 452 260.0 5.4e-77 1 CL0063
Cotton_A_28591_CDS 340 604 337 604 PF00664.23 ABC_membrane Family 6 274 274 102.0 4.4e-29 1 CL0241
Cotton_A_28591_CDS 668 802 668 803 PF00005.27 ABC_tran Domain 1 136 137 66.6 3.1e-18 1 CL0023
Cotton_A_28591_CDS 978 1219 973 1236 PF00664.23 ABC_membrane Family 4 247 274 92.4 3.8e-26 1 CL0241
Cotton_A_28591_CDS 1311 1459 1311 1459 PF00005.27 ABC_tran Domain 1 137 137 102.5 2.6e-29 1 CL0023
Cotton_A_11653_CDS 44 274 44 274 PF00230.20 MIP Family 1 227 227 277.3 9.8e-83 1 No_clan
Cotton_A_15077_CDS 199 271 198 275 PF10615.9 DUF2470 Family 2 73 77 36.1 7.3e-09 1 No_clan
Cotton_A_03785_CDS 16 122 15 122 PF01655.18 Ribosomal_L32e Family 2 108 108 170.2 1.4e-50 1 No_clan
Cotton_A_07368_CDS 213 259 212 259 PF02234.19 CDI Family 2 49 49 62.5 3.1e-17 1 No_clan
Cotton_A_26494_CDS 41 272 34 272 PF00481.21 PP2C Family 10 258 258 190.6 3.7e-56 1 CL0238
Cotton_A_07130_CDS 121 147 74 147 PF03765.15 CRAL_TRIO_N Domain 29 54 54 23.8 3.7e-05 1 CL0214
Cotton_A_07130_CDS 164 330 163 330 PF00650.20 CRAL_TRIO Domain 2 159 159 113.0 1.1e-32 1 CL0512
Cotton_A_06884_CDS 58 121 58 122 PF13499.6 EF-hand_7 Domain 1 70 71 48.7 7.9e-13 1 CL0220
Cotton_A_06884_CDS 166 192 166 194 PF00036.32 EF-hand_1 Domain 1 27 29 31.2 8.7e-08 1 CL0220
Cotton_A_34882_CDS 114 146 113 146 PF12854.7 PPR_1 Repeat 2 34 34 53.2 1.7e-14 1 CL0020
Cotton_A_34882_CDS 147 175 145 176 PF12854.7 PPR_1 Repeat 3 31 34 38.7 5.8e-10 1 CL0020
Cotton_A_34882_CDS 184 233 184 233 PF13041.6 PPR_2 Repeat 1 50 50 63.8 1.2e-17 1 CL0020
Cotton_A_34882_CDS 255 303 255 303 PF13041.6 PPR_2 Repeat 2 50 50 51.5 8.7e-14 1 CL0020
Cotton_A_34882_CDS 324 373 324 373 PF13041.6 PPR_2 Repeat 1 50 50 57.9 8.4e-16 1 CL0020
Cotton_A_34882_CDS 396 442 394 443 PF13041.6 PPR_2 Repeat 3 49 50 56.7 1.9e-15 1 CL0020
Cotton_A_34882_CDS 464 511 464 513 PF13041.6 PPR_2 Repeat 1 48 50 54.2 1.2e-14 1 CL0020
Cotton_A_10111_CDS 124 248 109 266 PF02536.14 mTERF Family 123 253 314 49.0 3.9e-13 1 No_clan
Cotton_A_10111_CDS 280 371 276 380 PF02536.14 mTERF Family 218 305 314 49.6 2.5e-13 1 No_clan
Cotton_A_23606_CDS 153 344 140 471 PF00266.19 Aminotran_5 Domain 46 236 371 22.3 5.4e-05 1 CL0061
Cotton_A_30046_CDS 29 495 27 504 PF00067.22 p450 Domain 3 450 463 220.8 3e-65 1 No_clan
Cotton_A_22350_CDS 8 95 7 108 PF00168.30 C2 Domain 2 86 103 55.3 6.5e-15 1 CL0154
Cotton_A_22350_CDS 276 361 257 363 PF00168.30 C2 Domain 24 101 103 15.7 0.014 1 CL0154
Cotton_A_22350_CDS 413 518 413 518 PF00168.30 C2 Domain 1 103 103 42.5 6.2e-11 1 CL0154
Cotton_A_22350_CDS 567 672 566 672 PF00168.30 C2 Domain 2 103 103 76.3 1.9e-21 1 CL0154
Cotton_A_22350_CDS 817 972 817 972 PF08372.10 PRT_C Family 1 156 156 212.8 2e-63 1 CL0484
Cotton_A_22404_CDS 95 308 95 309 PF07859.13 Abhydrolase_3 Domain 1 210 211 199.0 8e-59 1 CL0028
Cotton_A_31597_CDS 77 335 77 335 PF00069.25 Pkinase Domain 1 264 264 253.6 2e-75 1 CL0016
Cotton_A_31597_CDS 383 443 380 444 PF13499.6 EF-hand_7 Domain 4 70 71 45.3 9.1e-12 1 CL0220
Cotton_A_31597_CDS 453 515 452 515 PF13499.6 EF-hand_7 Domain 2 71 71 54.7 1.1e-14 1 CL0220
Cotton_A_18508_CDS 9 166 9 167 PF17135.4 Ribosomal_L18 Family 1 172 187 230.4 1e-68 1 CL0588
Cotton_A_35898_CDS 238 362 237 362 PF07526.11 POX Domain 2 136 136 149.2 9.7e-44 1 No_clan
Cotton_A_35898_CDS 431 471 431 471 PF05920.11 Homeobox_KN Family 1 40 40 53.8 1.3e-14 1 CL0123
Cotton_A_27856_CDS 68 193 66 211 PF10075.9 CSN8_PSD8_EIF3K Family 3 128 144 52.7 4.3e-14 1 CL0123
Cotton_A_27012_CDS 160 656 160 658 PF01593.24 Amino_oxidase Domain 1 450 452 77.6 1.2e-21 1 CL0063
Cotton_A_02560_CDS 226 251 222 251 PF01535.20 PPR Family 6 31 31 11.4 0.31 1 CL0020
Cotton_A_02560_CDS 364 391 363 392 PF01535.20 PPR Family 3 30 31 17.3 0.0041 1 CL0020
Cotton_A_02560_CDS 396 443 394 443 PF13041.6 PPR_2 Repeat 3 50 50 50.1 2.3e-13 1 CL0020
Cotton_A_02560_CDS 468 512 467 512 PF13041.6 PPR_2 Repeat 5 49 50 40.4 2.5e-10 1 CL0020
Cotton_A_01535_CDS 381 436 381 437 PF05383.17 La Domain 1 58 59 75.1 3.2e-21 1 CL0123
Cotton_A_11395_CDS 1 111 1 117 PF00664.23 ABC_membrane Family 68 176 274 79.6 3e-22 1 CL0241
Cotton_A_18218_CDS 10 143 9 167 PF03094.15 Mlo Family 2 127 479 145.2 2e-42 1 No_clan
Cotton_A_13791_CDS 90 259 90 260 PF04427.18 Brix Domain 1 192 193 102.6 2.8e-29 1 CL0458
Cotton_A_10652_CDS 155 595 155 595 PF12899.7 Glyco_hydro_100 Domain 1 435 435 703.7 7.3e-212 1 CL0059
Cotton_A_26624_CDS 31 358 31 359 PF11955.8 PORR Family 1 325 326 381.3 3e-114 1 No_clan
Cotton_A_03838_CDS 25 289 25 290 PF02265.16 S1-P1_nuclease Domain 1 252 253 274.0 1.4e-81 1 CL0368
Cotton_A_24085_CDS 3 92 1 92 PF00479.22 G6PD_N Domain 90 177 177 105.1 6.2e-30 1 CL0063
Cotton_A_24085_CDS 94 327 81 332 PF02781.16 G6PD_C Domain 24 274 290 221.8 1e-65 1 CL0139
Cotton_A_31316_CDS 62 239 62 240 PF00270.29 DEAD Domain 1 175 176 128.0 3.2e-37 1 CL0023
Cotton_A_31316_CDS 278 421 278 421 PF00271.31 Helicase_C Family 1 111 111 112.5 1.2e-32 1 CL0023
Cotton_A_39359_CDS 36 86 15 86 PF01591.18 6PF2K Domain 172 223 223 35.7 5.5e-09 1 CL0023
Cotton_A_22655_CDS 2 229 2 236 PF00483.23 NTP_transferase Family 1 241 248 176.9 5e-52 1 CL0110
Cotton_A_22655_CDS 260 293 260 295 PF00132.24 Hexapep Repeat 1 34 36 30.9 1.5e-07 1 CL0536
Cotton_A_38322_CDS 394 614 392 615 PF03407.16 Nucleotid_trans Family 3 211 212 159.1 1.5e-46 1 CL0110
Cotton_A_04264_CDS 131 355 129 357 PF04499.15 SAPS Family 3 238 489 132.2 2.4e-38 1 No_clan
Cotton_A_04264_CDS 357 491 355 491 PF04499.15 SAPS Family 355 489 489 77.7 7.9e-22 1 No_clan
Cotton_A_23208_CDS 3 95 1 95 PF00314.17 Thaumatin Domain 111 214 214 85.8 3.1e-24 1 CL0293
Cotton_A_26862_CDS 42 313 42 317 PF00069.25 Pkinase Domain 1 258 264 176.9 4.8e-52 1 CL0016
Cotton_A_24272_CDS 78 168 77 168 PF04576.15 Zein-binding Family 2 92 92 102.2 1.4e-29 1 No_clan
Cotton_A_19831_CDS 13 60 13 60 PF00249.31 Myb_DNA-binding Domain 1 46 46 56.7 2e-15 1 CL0123
Cotton_A_19831_CDS 66 109 66 111 PF00249.31 Myb_DNA-binding Domain 1 44 46 48.9 5.3e-13 1 CL0123
Cotton_A_15528_CDS 40 148 40 148 PF02466.19 Tim17 Family 1 111 111 42.1 9.2e-11 1 No_clan
Cotton_A_15528_CDS 214 408 213 408 PF01201.22 Ribosomal_S8e Family 2 137 137 177.4 1.5e-52 1 No_clan
Cotton_A_02719_CDS 75 164 74 166 PF17773.1 UPF0176_N Domain 2 90 92 62.7 3.1e-17 1 CL0622
Cotton_A_02719_CDS 213 306 201 308 PF00581.20 Rhodanese Domain 12 105 107 27.3 4e-06 1 CL0031
Cotton_A_02719_CDS 316 397 315 398 PF12368.8 Rhodanese_C Family 2 63 64 60.6 1.4e-16 1 No_clan
Cotton_A_17617_CDS 94 123 93 123 PF01535.20 PPR Family 2 31 31 17.4 0.0037 1 CL0020
Cotton_A_17617_CDS 166 193 163 193 PF01535.20 PPR Family 4 31 31 22.7 7.5e-05 1 CL0020
Cotton_A_17617_CDS 194 218 194 223 PF01535.20 PPR Family 1 25 31 23.4 4.6e-05 1 CL0020
Cotton_A_17617_CDS 300 390 292 399 PF17177.4 PPR_long Domain 17 116 212 28.3 1e-06 1 CL0020
Cotton_A_17617_CDS 466 589 465 589 PF14432.6 DYW_deaminase Family 2 127 127 129.7 5.6e-38 1 CL0109
Cotton_A_16912_CDS 13 104 13 105 PF09177.11 Syntaxin-6_N Domain 1 98 99 64.3 1.1e-17 1 No_clan
Cotton_A_04165_CDS 68 650 68 650 PF16940.5 Tic110 Family 1 574 574 932.2 1.1e-280 1 No_clan
Cotton_A_23188_CDS 18 292 18 293 PF01263.20 Aldose_epim Family 1 300 301 234.4 1.7e-69 1 CL0103
Cotton_A_06821_CDS 20 42 19 42 PF01754.16 zf-A20 Family 2 24 24 36.1 4.6e-09 1 No_clan
Cotton_A_06821_CDS 114 151 114 151 PF01428.16 zf-AN1 Family 1 40 40 39.5 4.4e-10 1 No_clan
Cotton_A_02326_CDS 155 293 155 295 PF03479.15 DUF296 Domain 1 105 107 94.5 4.6e-27 1 CL0615
Cotton_A_12638_CDS 121 452 116 455 PF01619.18 Pro_dh Family 6 292 296 240.8 2.2e-71 1 CL0086
Cotton_A_38862_CDS 24 419 23 422 PF01490.18 Aa_trans Family 2 406 409 314.9 6.8e-94 1 CL0062
Cotton_A_40923_CDS 46 310 43 313 PF07714.17 Pkinase_Tyr Domain 4 256 259 168.5 1.6e-49 1 CL0016
Cotton_A_01624_CDS 57 166 43 175 PF14580.6 LRR_9 Repeat 51 160 175 51.8 6.6e-14 1 CL0022
Cotton_A_01445_CDS 1 162 1 162 PF14009.6 DUF4228 Family 1 179 179 113.2 1.7e-32 1 No_clan
Cotton_A_12241_CDS 10 57 10 57 PF00249.31 Myb_DNA-binding Domain 1 46 46 64.4 8e-18 1 CL0123
Cotton_A_01704_CDS 14 71 13 71 PF00226.31 DnaJ Domain 2 63 63 79.6 1.4e-22 1 CL0392
Cotton_A_01704_CDS 121 342 120 342 PF01556.18 DnaJ_C Domain 2 148 148 138.8 1.4e-40 1 No_clan
Cotton_A_01704_CDS 147 213 147 213 PF00684.19 DnaJ_CXXCXGXG Domain 1 67 67 59.2 3.9e-16 1 No_clan
Cotton_A_36584_CDS 142 395 142 395 PF04788.12 DUF620 Family 1 243 243 370.5 3.4e-111 1 No_clan
Cotton_A_09999_CDS 11 143 10 148 PF10358.9 NT-C2 Family 2 140 146 65.7 3.5e-18 1 CL0154
Cotton_A_16296_CDS 9 132 9 132 PF02365.15 NAM Family 1 126 126 134.3 4.4e-39 1 No_clan
Cotton_A_23493_CDS 43 361 42 361 PF05004.13 IFRD Family 1 306 306 282.1 4.8e-84 1 CL0020
Cotton_A_23493_CDS 389 441 389 442 PF04836.12 IFRD_C Family 1 51 52 52.4 5.8e-14 1 No_clan
Cotton_A_01893_CDS 1 284 1 284 PF00332.18 Glyco_hydro_17 Domain 30 313 313 352.9 1.9e-105 1 CL0058
Cotton_A_08288_CDS 71 231 71 233 PF03190.15 Thioredox_DsbH Family 1 161 163 250.1 9e-75 1 CL0172
Cotton_A_09323_CDS 51 194 49 195 PF00190.22 Cupin_1 Domain 3 150 151 118.3 2.1e-34 1 CL0029
Cotton_A_04188_CDS 94 124 94 125 PF00641.18 zf-RanBP Domain 1 29 30 31.8 6.3e-08 1 CL0167
Cotton_A_04188_CDS 318 347 318 354 PF00076.22 RRM_1 Domain 1 30 70 26.2 5.1e-06 1 CL0221
Cotton_A_33067_CDS 6 335 3 337 PF08569.11 Mo25 Family 3 325 327 389.0 1.9e-116 1 CL0020
Cotton_A_25629_CDS 17 105 16 105 PF13334.6 DUF4094 Family 2 88 88 70.4 1.3e-19 1 No_clan
Cotton_A_25629_CDS 144 304 144 327 PF01762.21 Galactosyl_T Family 1 157 195 126.2 1.4e-36 1 CL0110
Cotton_A_29706_CDS 70 167 69 167 PF00127.20 Copper-bind Domain 2 99 99 115.3 1.4e-33 1 CL0026
Cotton_A_07535_CDS 56 192 56 194 PF01565.23 FAD_binding_4 Domain 1 136 139 99.8 1.1e-28 1 CL0077
Cotton_A_07535_CDS 451 508 451 508 PF08031.12 BBE Domain 1 46 46 79.7 1.2e-22 1 CL0277
Cotton_A_38579_CDS 53 99 50 100 PF00847.20 AP2 Domain 5 53 54 40.7 2e-10 1 CL0081
Cotton_A_22718_CDS 93 187 92 203 PF02338.19 OTU Family 2 101 127 48.3 1.3e-12 1 CL0125
Cotton_A_01116_CDS 68 92 68 92 PF12874.7 zf-met Domain 1 25 25 21.2 0.00027 1 CL0361
Cotton_A_01116_CDS 182 283 179 285 PF12756.7 zf-C2H2_2 Family 2 99 101 89.7 1.3e-25 1 CL0361
Cotton_A_12568_CDS 67 177 66 197 PF12146.8 Hydrolase_4 Family 2 114 239 36.9 2.2e-09 1 CL0028
Cotton_A_25356_CDS 20 187 10 187 PF10469.9 AKAP7_NLS Domain 30 207 207 173.1 7e-51 1 CL0247
Cotton_A_00490_CDS 547 619 545 619 PF16135.5 Jas Family 3 76 76 89.3 1.3e-25 1 No_clan
Cotton_A_00924_CDS 71 222 70 222 PF00005.27 ABC_tran Domain 2 137 137 82.6 3.6e-23 1 CL0023
Cotton_A_00924_CDS 369 578 368 578 PF01061.24 ABC2_membrane Family 2 210 210 143.9 4.3e-42 1 CL0181
Cotton_A_29321_CDS 41 98 39 98 PF00403.26 HMA Domain 3 62 62 45.8 6e-12 1 No_clan
Cotton_A_14087_CDS 93 370 92 371 PF00483.23 NTP_transferase Family 2 247 248 260.3 1.8e-77 1 CL0110
Cotton_A_04014_CDS 91 244 91 244 PF00005.27 ABC_tran Domain 1 137 137 105.9 2.3e-30 1 CL0023
Cotton_A_04014_CDS 400 606 400 606 PF01061.24 ABC2_membrane Family 1 210 210 137.2 4.8e-40 1 CL0181
Cotton_A_05328_CDS 2 45 1 47 PF00646.33 F-box Domain 3 46 48 42.9 3e-11 1 CL0271
Cotton_A_04498_CDS 25 200 24 202 PF02779.24 Transket_pyr Domain 2 176 178 156.9 4.1e-46 1 CL0254
Cotton_A_04498_CDS 219 341 219 341 PF02780.20 Transketolase_C Domain 1 124 124 144.6 1.3e-42 1 CL0591
Cotton_A_18521_CDS 21 100 21 107 PF16561.5 AMPK1_CBM Family 1 77 85 91.0 4e-26 1 CL0369
Cotton_A_18521_CDS 348 393 346 398 PF00571.28 CBS Domain 7 52 57 28.7 1.3e-06 1 No_clan
Cotton_A_18521_CDS 432 477 427 478 PF00571.28 CBS Domain 12 56 57 32.6 7.9e-08 1 No_clan
Cotton_A_16437_CDS 121 140 121 140 PF15365.6 PNRC Motif 1 20 20 24.1 2.3e-05 1 No_clan
Cotton_A_26848_CDS 7 128 2 139 PF07714.17 Pkinase_Tyr Domain 30 143 259 79.7 2.1e-22 1 CL0016
Cotton_A_38326_CDS 24 84 24 84 PF13921.6 Myb_DNA-bind_6 Domain 1 60 60 59.3 3.3e-16 1 CL0123
Cotton_A_15859_CDS 21 100 19 101 PF07011.11 Elf4 Domain 3 82 83 131.0 1.1e-38 1 No_clan
Cotton_A_15714_CDS 153 227 153 228 PF00076.22 RRM_1 Domain 1 69 70 38.2 9.1e-10 1 CL0221
Cotton_A_15714_CDS 303 330 302 330 PF01535.20 PPR Family 4 31 31 18.6 0.0016 1 CL0020
Cotton_A_15714_CDS 332 381 332 381 PF13041.6 PPR_2 Repeat 1 50 50 37.5 2e-09 1 CL0020
Cotton_A_15714_CDS 406 435 405 435 PF01535.20 PPR Family 2 31 31 15.3 0.017 1 CL0020
Cotton_A_15714_CDS 441 467 440 468 PF01535.20 PPR Family 2 28 31 13.0 0.096 1 CL0020
Cotton_A_15714_CDS 504 552 504 553 PF13041.6 PPR_2 Repeat 1 49 50 38.6 9.2e-10 1 CL0020
Cotton_A_15714_CDS 563 617 562 618 PF13812.6 PPR_3 Repeat 2 56 63 39.6 4e-10 1 CL0020
Cotton_A_15714_CDS 644 692 644 693 PF13041.6 PPR_2 Repeat 1 49 50 50.8 1.3e-13 1 CL0020
Cotton_A_15714_CDS 711 742 710 743 PF12854.7 PPR_1 Repeat 2 33 34 27.7 1.6e-06 1 CL0020
Cotton_A_15714_CDS 750 798 749 798 PF13041.6 PPR_2 Repeat 2 50 50 57.9 8.6e-16 1 CL0020
Cotton_A_15714_CDS 819 866 819 868 PF13041.6 PPR_2 Repeat 1 48 50 40.6 2.2e-10 1 CL0020
Cotton_A_32168_CDS 26 241 26 241 PF00314.17 Thaumatin Domain 1 214 214 268.1 5.2e-80 1 CL0293
Cotton_A_33215_CDS 84 140 84 140 PF00281.19 Ribosomal_L5 Domain 1 57 57 91.1 4e-26 1 CL0652
Cotton_A_33215_CDS 144 237 144 237 PF00673.21 Ribosomal_L5_C Domain 1 94 94 114.6 1.7e-33 1 No_clan
Cotton_A_34511_CDS 228 299 215 299 PF17958.1 EF-hand_13 Domain 19 90 90 99.9 5e-29 1 CL0220
Cotton_A_34511_CDS 314 414 314 415 PF13499.6 EF-hand_7 Domain 1 70 71 61.6 7e-17 1 CL0220
Cotton_A_13208_CDS 46 159 37 160 PF09748.9 Med10 Family 3 120 121 105.9 1.2e-30 1 No_clan
Cotton_A_12552_CDS 6 275 3 277 PF00069.25 Pkinase Domain 4 260 264 154.6 3.2e-45 1 CL0016
Cotton_A_38075_CDS 157 302 155 302 PF06480.15 FtsH_ext Family 3 109 109 42.5 6.7e-11 1 No_clan
Cotton_A_38075_CDS 389 516 389 518 PF00004.29 AAA Domain 1 130 132 132.2 1.5e-38 1 CL0023
Cotton_A_38075_CDS 548 586 542 586 PF17862.1 AAA_lid_3 Domain 7 45 45 47.9 8.3e-13 1 CL0671
Cotton_A_31896_CDS 86 241 85 242 PF05142.12 DUF702 Family 2 149 150 221.8 4.8e-66 1 No_clan
Cotton_A_11147_CDS 32 494 32 494 PF00171.22 Aldedh Family 1 462 462 589.9 2.8e-177 1 CL0099
Cotton_A_18800_CDS 194 269 183 278 PF06325.13 PrmA Family 159 232 296 33.4 3.1e-08 1 CL0063
Cotton_A_27768_CDS 75 334 74 334 PF01545.21 Cation_efflux Family 5 199 199 149.5 9.5e-44 1 No_clan
Cotton_A_34917_CDS 78 353 75 353 PF07714.17 Pkinase_Tyr Domain 4 259 259 156.4 8.3e-46 1 CL0016
Cotton_A_17664_CDS 4 112 1 113 PF00305.19 Lipoxygenase Domain 85 213 674 32.2 3.8e-08 1 No_clan
Cotton_A_17664_CDS 112 172 111 173 PF00305.19 Lipoxygenase Domain 249 309 674 81.2 5.8e-23 1 No_clan
Cotton_A_17542_CDS 50 105 49 107 PF02701.15 zf-Dof Family 2 57 59 109.1 8.4e-32 1 No_clan
Cotton_A_07494_CDS 132 152 130 153 PF13516.6 LRR_6 Repeat 3 23 24 12.6 0.11 1 CL0022
Cotton_A_07494_CDS 155 178 154 178 PF13516.6 LRR_6 Repeat 2 24 24 14.1 0.037 1 CL0022
Cotton_A_07494_CDS 230 252 228 252 PF13516.6 LRR_6 Repeat 3 24 24 12.7 0.1 1 CL0022
Cotton_A_07494_CDS 304 324 302 324 PF13516.6 LRR_6 Repeat 4 24 24 15.4 0.014 1 CL0022
Cotton_A_07494_CDS 328 342 328 347 PF13516.6 LRR_6 Repeat 4 18 24 10.4 0.57 1 CL0022
Cotton_A_07494_CDS 351 371 349 371 PF13516.6 LRR_6 Repeat 3 23 24 15.0 0.019 1 CL0022
Cotton_A_07494_CDS 447 463 445 467 PF13516.6 LRR_6 Repeat 3 19 24 9.2 1.4 1 CL0022
Cotton_A_11982_CDS 1 148 1 149 PF03181.15 BURP Family 65 214 215 174.4 2.4e-51 1 No_clan
Cotton_A_06924_CDS 26 106 24 106 PF14389.6 Lzipper-MIP1 Family 3 84 84 78.5 3.5e-22 1 No_clan
Cotton_A_06924_CDS 337 466 336 466 PF04784.14 DUF547 Family 2 123 123 123.2 5.9e-36 1 No_clan
Cotton_A_20898_CDS 304 348 304 348 PF13639.6 zf-RING_2 Domain 1 44 44 47.5 1.6e-12 1 CL0229
Cotton_A_25386_CDS 93 255 92 260 PF04144.13 SCAMP Family 2 165 174 175.1 1.5e-51 1 No_clan
Cotton_A_10501_CDS 35 447 33 448 PF00501.28 AMP-binding Family 3 422 423 341.0 8e-102 1 CL0378
Cotton_A_10501_CDS 456 531 456 531 PF13193.6 AMP-binding_C Domain 1 76 76 58.3 1.2e-15 1 CL0531
Cotton_A_21012_CDS 97 154 97 154 PF03106.15 WRKY Domain 1 59 59 86.2 1.3e-24 1 CL0274
Cotton_A_09665_CDS 1 37 1 40 PF01248.26 Ribosomal_L7Ae Domain 57 92 95 23.0 5e-05 1 CL0101
Cotton_A_36166_CDS 14 540 13 547 PF12070.8 SCAI Family 2 521 535 595.1 1.4e-178 1 No_clan
Cotton_A_09992_CDS 76 136 74 136 PF02186.15 TFIIE_beta Domain 3 68 68 33.5 3.7e-08 1 CL0123
Cotton_A_09992_CDS 137 194 137 194 PF18121.1 TFA2_Winged_2 Domain 1 61 61 54.7 6e-15 1 CL0123
Cotton_A_11069_CDS 49 376 48 376 PF00933.21 Glyco_hydro_3 Domain 2 319 319 247.2 2.5e-73 1 CL0058
Cotton_A_11069_CDS 413 622 413 623 PF01915.22 Glyco_hydro_3_C Domain 1 203 204 126.9 9.5e-37 1 No_clan
Cotton_A_24526_CDS 4 76 2 76 PF02798.20 GST_N Domain 3 76 76 69.2 2.9e-19 1 CL0172
Cotton_A_24526_CDS 115 195 81 195 PF00043.25 GST_C Domain 19 93 93 34.2 2.1e-08 1 CL0497
Cotton_A_07780_CDS 55 158 54 160 PF00168.30 C2 Domain 2 101 103 68.6 4.8e-19 1 CL0154
Cotton_A_07780_CDS 217 323 217 323 PF00168.30 C2 Domain 1 103 103 70.2 1.4e-19 1 CL0154
Cotton_A_07780_CDS 381 489 381 489 PF00168.30 C2 Domain 1 103 103 90.9 5.1e-26 1 CL0154
Cotton_A_08236_CDS 58 132 58 142 PF01715.17 IPPT Domain 1 75 228 71.1 1.1e-19 1 CL0023
Cotton_A_08236_CDS 143 238 134 248 PF01715.17 IPPT Domain 142 221 228 46.7 3.4e-12 1 CL0023
Cotton_A_07890_CDS 95 211 95 211 PF13793.6 Pribosyltran_N Domain 1 116 116 166.8 1.5e-49 1 CL0533
Cotton_A_07890_CDS 297 404 291 405 PF14572.6 Pribosyl_synth Domain 75 183 184 77.9 9.8e-22 1 CL0533
Cotton_A_16419_CDS 22 288 18 301 PF04189.13 Gcd10p Family 7 289 300 201.9 1.2e-59 1 No_clan
Cotton_A_19319_CDS 11 45 3 45 PF01753.18 zf-MYND Domain 3 38 38 34.9 1.1e-08 1 CL0175
Cotton_A_00216_CDS 185 427 100 428 PF09746.9 Membralin Family 164 380 381 58.9 4.5e-16 1 No_clan
Cotton_A_28550_CDS 28 67 27 67 PF08263.12 LRRNT_2 Family 2 41 41 38.9 7.9e-10 1 No_clan
Cotton_A_28550_CDS 365 425 364 425 PF13855.6 LRR_8 Repeat 2 61 61 27.0 2.7e-06 1 CL0022
Cotton_A_28550_CDS 671 729 670 729 PF13855.6 LRR_8 Repeat 2 61 61 29.7 3.9e-07 1 CL0022
Cotton_A_28550_CDS 767 788 766 788 PF00560.33 LRR_1 Repeat 2 23 23 9.4 1.9 1 CL0022
Cotton_A_20593_CDS 37 348 37 348 PF01074.22 Glyco_hydro_38N Domain 1 289 289 321.0 7.2e-96 1 CL0158
Cotton_A_20593_CDS 353 445 353 445 PF09261.11 Alpha-mann_mid Domain 1 96 96 72.0 3.4e-20 1 CL0599
Cotton_A_20593_CDS 602 816 600 816 PF07748.13 Glyco_hydro_38C Domain 3 214 214 170.9 4e-50 1 CL0103
Cotton_A_20593_CDS 898 1004 898 1004 PF17677.1 Glyco_hydro38C2 Domain 1 69 69 37.0 2.8e-09 1 CL0369
Cotton_A_01306_CDS 7 127 7 128 PF00241.20 Cofilin_ADF Domain 1 120 121 132.1 8.7e-39 1 CL0092
Cotton_A_16914_CDS 162 277 162 277 PF08784.11 RPA_C Domain 1 104 104 62.0 7.2e-17 1 CL0123
Cotton_A_11088_CDS 8 209 8 225 PF00069.25 Pkinase Domain 1 199 264 194.2 2.6e-57 1 CL0016
Cotton_A_30124_CDS 94 419 82 419 PF00291.25 PALP Family 21 294 294 41.2 1.3e-10 1 CL0063
Cotton_A_10018_CDS 33 208 32 210 PF02779.24 Transket_pyr Domain 2 176 178 153.5 4.4e-45 1 CL0254
Cotton_A_10018_CDS 230 327 228 327 PF02780.20 Transketolase_C Domain 26 124 124 112.1 1.4e-32 1 CL0591
Cotton_A_25652_CDS 45 517 42 519 PF00232.18 Glyco_hydro_1 Domain 4 451 453 515.5 8.8e-155 1 CL0058
Cotton_A_14806_CDS 369 394 365 394 PF04810.15 zf-Sec23_Sec24 Domain 14 39 39 26.1 6.4e-06 1 No_clan
Cotton_A_14806_CDS 431 702 431 703 PF04811.15 Sec23_trunk Domain 1 242 243 258.2 7.3e-77 1 CL0128
Cotton_A_14806_CDS 708 797 708 798 PF08033.12 Sec23_BS Domain 1 95 96 54.7 1.3e-14 1 No_clan
Cotton_A_14806_CDS 809 912 809 913 PF04815.15 Sec23_helical Domain 1 102 103 63.0 1.9e-17 1 No_clan
Cotton_A_14806_CDS 940 1004 937 1009 PF00626.22 Gelsolin Domain 5 71 76 21.5 0.00016 1 CL0092
Cotton_A_35607_CDS 122 436 122 438 PF01546.28 Peptidase_M20 Family 1 205 207 109.8 1.4e-31 1 CL0035
Cotton_A_35607_CDS 231 329 229 333 PF07687.14 M20_dimer Domain 5 105 109 43.9 1.9e-11 1 No_clan
Cotton_A_04956_CDS 22 106 21 106 PF10241.9 KxDL Domain 2 86 86 90.8 5.1e-26 1 No_clan
Cotton_A_00334_CDS 28 73 26 75 PF00249.31 Myb_DNA-binding Domain 3 44 46 27.5 2.6e-06 1 CL0123
Cotton_A_00334_CDS 136 180 134 181 PF00249.31 Myb_DNA-binding Domain 3 45 46 46.9 2.2e-12 1 CL0123
Cotton_A_03111_CDS 41 240 40 240 PF00349.21 Hexokinase_1 Domain 2 199 199 220.5 1.9e-65 1 CL0108
Cotton_A_03111_CDS 247 487 246 488 PF03727.16 Hexokinase_2 Domain 2 239 240 274.6 6.3e-82 1 CL0108
Cotton_A_03892_CDS 2 218 2 218 PF12481.8 DUF3700 Domain 1 228 228 261.2 7.1e-78 1 CL0052
Cotton_A_11527_CDS 62 111 62 114 PF16320.5 Ribosomal_L12_N Domain 1 47 48 53.7 1.2e-14 1 No_clan
Cotton_A_11527_CDS 122 188 122 189 PF00542.19 Ribosomal_L12 Domain 1 66 67 85.6 2.1e-24 1 No_clan
Cotton_A_12953_CDS 58 212 57 213 PF00504.21 Chloroa_b-bind Family 2 160 161 160.9 3.5e-47 1 No_clan
Cotton_A_35448_CDS 79 288 78 288 PF13483.6 Lactamase_B_3 Domain 2 163 163 146.8 4.9e-43 1 CL0381
Cotton_A_26403_CDS 98 246 97 246 PF01789.16 PsbP Domain 2 156 156 170.2 3.3e-50 1 CL0619
Cotton_A_01035_CDS 31 341 31 341 PF00069.25 Pkinase Domain 1 264 264 231.4 1.2e-68 1 CL0016
Cotton_A_36989_CDS 4 114 2 124 PF06479.12 Ribonuc_2-5A Family 12 115 127 24.8 2e-05 1 No_clan
Cotton_A_12520_CDS 13 60 13 60 PF00249.31 Myb_DNA-binding Domain 1 46 46 53.4 2.1e-14 1 CL0123
Cotton_A_12520_CDS 66 110 66 111 PF00249.31 Myb_DNA-binding Domain 1 45 46 51.1 1.1e-13 1 CL0123
Cotton_A_03561_CDS 42 183 41 183 PF04043.15 PMEI Domain 3 154 154 42.2 1e-10 1 No_clan
Cotton_A_18548_CDS 69 125 68 126 PF02701.15 zf-Dof Family 2 58 59 113.2 4.5e-33 1 No_clan
Cotton_A_24536_CDS 343 494 343 496 PF01764.25 Lipase_3 Family 1 139 142 109.2 1.5e-31 1 CL0028
Cotton_A_27995_CDS 56 320 54 321 PF00069.25 Pkinase Domain 3 263 264 225.9 5.6e-67 1 CL0016
Cotton_A_27995_CDS 396 498 396 499 PF14593.6 PH_3 Family 1 100 104 107.6 3.1e-31 1 CL0266
Cotton_A_13975_CDS 2 296 2 352 PF17681.1 GCP_N_terminal Domain 1 255 306 105.7 3.5e-30 1 CL0540
Cotton_A_13975_CDS 351 669 351 670 PF04130.13 GCP_C_terminal Domain 1 306 309 185.1 2.1e-54 1 CL0540
Cotton_A_04323_CDS 102 145 101 145 PF13639.6 zf-RING_2 Domain 2 44 44 56.2 3.2e-15 1 CL0229
Cotton_A_30456_CDS 254 471 254 472 PF12251.8 zf-SNAP50_C Family 1 199 200 229.2 3.5e-68 1 No_clan
Cotton_A_16435_CDS 27 68 26 68 PF08263.12 LRRNT_2 Family 3 41 41 31.5 1.6e-07 1 No_clan
Cotton_A_16435_CDS 555 593 554 598 PF12799.7 LRR_4 Repeat 4 40 44 27.2 3.6e-06 1 CL0022
Cotton_A_16435_CDS 695 966 694 966 PF07714.17 Pkinase_Tyr Domain 2 259 259 149.0 1.5e-43 1 CL0016
Cotton_A_08639_CDS 54 277 32 287 PF00481.21 PP2C Family 28 250 258 106.4 1.8e-30 1 CL0238
Cotton_A_29313_CDS 6 108 4 112 PF00168.30 C2 Domain 3 99 103 60.2 1.9e-16 1 CL0154
Cotton_A_23923_CDS 60 250 54 250 PF02115.17 Rho_GDI Domain 5 195 195 272.2 2.4e-81 1 CL0159
Cotton_A_19269_CDS 31 100 7 102 PF02519.14 Auxin_inducible Family 20 88 90 77.9 4.8e-22 1 No_clan
Cotton_A_25209_CDS 22 751 20 751 PF03030.16 H_PPase Family 3 650 650 857.5 7.4e-258 1 No_clan
Cotton_A_09982_CDS 123 141 121 141 PF00612.27 IQ Motif 3 21 21 26.1 4e-06 1 CL0220
Cotton_A_09982_CDS 355 428 350 450 PF13178.6 DUF4005 Family 1 63 93 47.4 2.3e-12 1 No_clan
Cotton_A_06303_CDS 140 169 139 169 PF01535.20 PPR Family 2 31 31 27.6 2.1e-06 1 CL0020
Cotton_A_06303_CDS 176 218 174 220 PF13041.6 PPR_2 Repeat 6 48 50 35.3 9.5e-09 1 CL0020
Cotton_A_06303_CDS 352 376 350 378 PF01535.20 PPR Family 4 28 31 13.5 0.068 1 CL0020
Cotton_A_06303_CDS 385 408 385 411 PF01535.20 PPR Family 2 25 31 13.9 0.048 1 CL0020
Cotton_A_08879_CDS 154 301 153 301 PF08231.12 SYF2 Domain 2 159 159 128.0 4.1e-37 1 No_clan
Cotton_A_14832_CDS 159 305 148 316 PF00566.18 RabGAP-TBC Family 47 193 215 122.2 2.3e-35 1 No_clan
Cotton_A_33071_CDS 18 56 16 61 PF00646.33 F-box Domain 4 42 48 40.1 2.3e-10 1 CL0271
Cotton_A_32070_CDS 12 88 9 89 PF14541.6 TAXi_C Domain 74 160 161 31.4 1.4e-07 1 CL0129
Cotton_A_11680_CDS 42 95 38 304 PF12708.7 Pectate_lyase_3 Family 6 58 215 28.4 1.3e-06 1 CL0268
Cotton_A_11680_CDS 134 414 75 421 PF00295.17 Glyco_hydro_28 Domain 52 318 325 124.9 3.5e-36 1 CL0268
Cotton_A_01988_CDS 17 76 17 76 PF00137.21 ATP-synt_C Family 1 60 60 52.1 6.2e-14 1 No_clan
Cotton_A_01988_CDS 97 155 96 155 PF00137.21 ATP-synt_C Family 2 60 60 72.2 3.2e-20 1 No_clan
Cotton_A_01179_CDS 25 484 25 485 PF00171.22 Aldedh Family 1 461 462 467.2 4.5e-140 1 CL0099
Cotton_A_38349_CDS 2 67 1 67 PF01397.21 Terpene_synth Domain 125 192 192 46.5 3.2e-12 1 No_clan
Cotton_A_38349_CDS 98 165 98 172 PF03936.16 Terpene_synth_C Domain 1 68 267 77.3 1.2e-21 1 CL0613
Cotton_A_14221_CDS 19 83 19 84 PF01918.21 Alba Family 1 66 67 72.6 1.6e-20 1 CL0441
Cotton_A_01901_CDS 8 184 4 186 PF01145.25 Band_7 Family 5 176 178 62.4 5.2e-17 1 CL0433
Cotton_A_16172_CDS 82 230 81 233 PF01327.21 Pep_deformylase Domain 2 155 159 168.3 9.6e-50 1 No_clan
Cotton_A_14237_CDS 75 134 63 134 PF13855.6 LRR_8 Repeat 2 61 61 32.3 6e-08 1 CL0022
Cotton_A_14237_CDS 147 206 146 206 PF13855.6 LRR_8 Repeat 2 61 61 28.8 7.6e-07 1 CL0022
Cotton_A_14237_CDS 220 278 218 278 PF13855.6 LRR_8 Repeat 3 61 61 36.5 3.1e-09 1 CL0022
Cotton_A_14237_CDS 386 554 385 560 PF00069.25 Pkinase Domain 2 166 264 115.2 3.3e-33 1 CL0016
Cotton_A_30247_CDS 242 545 227 545 PF04484.12 QWRF Family 8 300 300 243.3 4.7e-72 1 No_clan
Cotton_A_25608_CDS 5 100 3 101 PF01554.18 MatE Family 66 160 161 38.6 8.1e-10 1 CL0222
Cotton_A_13157_CDS 68 200 55 213 PF10294.9 Methyltransf_16 Family 17 160 174 96.7 1.2e-27 1 CL0063
Cotton_A_29564_CDS 55 121 36 132 PF00078.27 RVT_1 Family 120 190 222 48.6 6.8e-13 1 CL0027
Cotton_A_29564_CDS 119 172 109 178 PF17919.1 RT_RNaseH_2 Domain 12 70 100 46.8 2.4e-12 1 CL0219
Cotton_A_00391_CDS 40 280 40 280 PF07250.11 Glyoxal_oxid_N Family 1 240 240 340.7 3.4e-102 1 No_clan
Cotton_A_00391_CDS 432 532 432 533 PF09118.11 DUF1929 Domain 1 95 96 90.8 5.2e-26 1 CL0159
Cotton_A_05136_CDS 11 70 4 73 PF00240.23 ubiquitin Domain 8 67 72 29.6 4.2e-07 1 CL0072
Cotton_A_19996_CDS 11 96 9 116 PF18052.1 Rx_N Domain 3 84 93 71.9 4.1e-20 1 No_clan
Cotton_A_19996_CDS 102 239 99 247 PF00931.22 NB-ARC Domain 4 139 252 91.1 6.2e-26 1 CL0023
Cotton_A_05239_CDS 1 75 1 78 PF02458.15 Transferase Family 1 75 434 37.5 1.1e-09 1 CL0149
Cotton_A_05239_CDS 78 402 76 406 PF02458.15 Transferase Family 102 430 434 240.8 2.2e-71 1 CL0149
Cotton_A_22887_CDS 51 171 50 175 PF00581.20 Rhodanese Domain 2 102 107 36.1 7.1e-09 1 CL0031
Cotton_A_30042_CDS 113 135 112 136 PF13181.6 TPR_8 Repeat 2 24 34 12.2 0.17 1 CL0020
Cotton_A_30042_CDS 182 213 180 213 PF13181.6 TPR_8 Repeat 3 34 34 23.1 5.5e-05 1 CL0020
Cotton_A_30042_CDS 391 417 390 421 PF13181.6 TPR_8 Repeat 3 29 34 12.9 0.098 1 CL0020
Cotton_A_30042_CDS 782 812 782 816 PF13176.6 TPR_7 Repeat 1 31 36 16.7 0.0051 1 CL0020
Cotton_A_39693_CDS 21 235 20 235 PF04548.16 AIG1 Domain 2 212 212 272.4 2e-81 1 CL0023
Cotton_A_25749_CDS 2 68 1 68 PF13966.6 zf-RVT Domain 19 85 85 49.3 6.1e-13 1 No_clan
Cotton_A_21232_CDS 21 134 21 135 PF03859.16 CG-1 Domain 1 115 116 161.9 4.2e-48 1 No_clan
Cotton_A_21232_CDS 615 708 615 712 PF12796.7 Ank_2 Repeat 1 80 83 28.5 1.7e-06 1 CL0465
Cotton_A_21232_CDS 818 836 817 837 PF00612.27 IQ Motif 2 20 21 14.0 0.031 1 CL0220
Cotton_A_21232_CDS 842 860 840 860 PF00612.27 IQ Motif 3 21 21 22.3 6.9e-05 1 CL0220
Cotton_A_37874_CDS 10 45 9 45 PF00319.18 SRF-TF Domain 13 48 48 57.3 7.8e-16 1 No_clan
Cotton_A_25472_CDS 24 73 23 74 PF00847.20 AP2 Domain 2 53 54 50.9 1.4e-13 1 CL0081
Cotton_A_27152_CDS 259 513 257 513 PF00069.25 Pkinase Domain 3 264 264 243.7 2.1e-72 1 CL0016
Cotton_A_03706_CDS 106 285 106 286 PF14543.6 TAXi_N Domain 1 177 178 137.1 7.4e-40 1 CL0129
Cotton_A_03706_CDS 309 460 308 461 PF14541.6 TAXi_C Domain 2 160 161 120.2 7.1e-35 1 CL0129
Cotton_A_11030_CDS 54 96 54 96 PF16711.5 SCAB-ABD Domain 1 43 43 82.7 1.2e-23 1 No_clan
Cotton_A_11030_CDS 100 267 100 267 PF16712.5 SCAB_CC Family 1 168 168 271.4 2.6e-81 1 No_clan
Cotton_A_11030_CDS 281 378 281 378 PF16709.5 SCAB-Ig Domain 1 98 98 153.1 1.6e-45 1 CL0159
Cotton_A_11030_CDS 381 487 381 488 PF17684.1 SCAB-PH Domain 1 107 108 199.3 1.1e-59 1 CL0266
Cotton_A_34788_CDS 6 78 6 80 PF04564.15 U-box Domain 1 71 73 68.1 5.6e-19 1 CL0229
Cotton_A_08684_CDS 11 102 10 110 PF00168.30 C2 Domain 3 95 103 53.1 3.2e-14 1 CL0154
Cotton_A_39398_CDS 20 339 20 340 PF05340.12 DUF740 Family 1 317 609 436.3 2.2e-130 1 No_clan
Cotton_A_39398_CDS 334 649 332 649 PF05340.12 DUF740 Family 298 609 609 451.4 6.1e-135 1 No_clan
Cotton_A_12485_CDS 17 81 17 82 PF01423.22 LSM Domain 1 66 67 66.2 1.6e-18 1 CL0527
Cotton_A_28612_CDS 13 65 12 66 PF00584.20 SecE Family 2 54 55 53.8 1.3e-14 1 No_clan
Cotton_A_37068_CDS 234 405 233 406 PF04194.13 PDCD2_C Domain 2 174 175 125.8 1.9e-36 1 No_clan
Cotton_A_22562_CDS 20 65 20 68 PF14244.6 Retrotran_gag_3 Family 1 45 48 63.7 9.9e-18 1 CL0523
Cotton_A_16963_CDS 281 487 281 487 PF01397.21 Terpene_synth Domain 1 192 192 183.8 2.7e-54 1 No_clan
Cotton_A_16963_CDS 517 662 516 752 PF03936.16 Terpene_synth_C Domain 20 162 267 37.9 1.2e-09 1 CL0613
Cotton_A_12138_CDS 20 90 20 90 PF11976.8 Rad60-SLD Family 1 72 72 87.3 4.5e-25 1 CL0072
Cotton_A_24019_CDS 65 90 64 91 PF05678.14 VQ Motif 2 27 28 41.8 5.1e-11 1 No_clan
Cotton_A_22430_CDS 11 74 10 75 PF01423.22 LSM Domain 2 66 67 57.6 7.3e-16 1 CL0527
Cotton_A_03966_CDS 71 116 69 117 PF00010.26 HLH Domain 4 52 53 42.5 4.6e-11 1 No_clan
Cotton_A_30956_CDS 121 347 121 348 PF02485.21 Branch Family 1 246 247 291.4 5.4e-87 1 CL0110
Cotton_A_26140_CDS 285 324 283 328 PF13920.6 zf-C3HC4_3 Domain 3 45 50 33.9 2.1e-08 1 CL0229
Cotton_A_19758_CDS 42 216 42 216 PF07798.11 DUF1640 Family 1 175 175 252.9 1.7e-75 1 No_clan
Cotton_A_31145_CDS 72 280 71 280 PF00685.27 Sulfotransfer_1 Domain 2 217 267 162.8 1.1e-47 1 CL0023
Cotton_A_00436_CDS 31 140 31 141 PF14226.6 DIOX_N Family 1 117 118 79.2 4e-22 1 CL0029
Cotton_A_00436_CDS 191 284 186 284 PF03171.20 2OG-FeII_Oxy Domain 6 101 101 75.6 3.6e-21 1 CL0029
Cotton_A_13878_CDS 30 346 30 348 PF00332.18 Glyco_hydro_17 Domain 1 311 313 290.6 1.8e-86 1 CL0058
Cotton_A_27060_CDS 175 290 174 335 PF03634.13 TCP Family 2 96 156 134.6 4.3e-39 1 No_clan
Cotton_A_23403_CDS 58 101 57 101 PF13639.6 zf-RING_2 Domain 2 44 44 38.1 1.4e-09 1 CL0229
Cotton_A_22062_CDS 31 848 24 850 PF05691.12 Raffinose_syn Family 8 748 750 1057.9 0 1 CL0058
Cotton_A_14004_CDS 127 330 126 330 PF14381.6 EDR1 Family 3 200 200 242.7 2.6e-72 1 CL0125
Cotton_A_14004_CDS 658 766 658 769 PF07714.17 Pkinase_Tyr Domain 1 115 259 63.8 1.5e-17 1 CL0016
Cotton_A_29758_CDS 67 341 62 344 PF03151.16 TPT Family 9 288 290 61.0 1.1e-16 1 CL0184
Cotton_A_20979_CDS 3 56 2 59 PF05347.15 Complex1_LYR Family 2 54 59 29.3 6.7e-07 1 CL0491
Cotton_A_19321_CDS 39 284 19 285 PF00248.21 Aldo_ket_red Domain 22 292 294 112.0 3e-32 1 No_clan
Cotton_A_18005_CDS 2 44 2 52 PF13418.6 Kelch_4 Repeat 1 44 49 33.8 2.6e-08 1 CL0186
Cotton_A_18005_CDS 53 95 53 103 PF13418.6 Kelch_4 Repeat 1 44 49 34.8 1.2e-08 1 CL0186
Cotton_A_00574_CDS 188 223 188 226 PF03470.14 zf-XS Domain 1 40 43 22.9 7.5e-05 1 No_clan
Cotton_A_00574_CDS 259 372 259 374 PF03468.14 XS Domain 1 111 113 118.4 1.8e-34 1 CL0221
Cotton_A_22250_CDS 16 122 15 127 PF02466.19 Tim17 Family 2 110 111 93.4 1.1e-26 1 No_clan
Cotton_A_10634_CDS 79 274 78 275 PF04755.12 PAP_fibrillin Family 2 197 198 160.8 3.9e-47 1 No_clan
Cotton_A_10240_CDS 15 130 14 132 PF01412.18 ArfGap Domain 2 115 117 134.1 2.3e-39 1 No_clan
Cotton_A_10240_CDS 164 250 162 269 PF00168.30 C2 Domain 4 93 103 79.5 1.8e-22 1 CL0154
Cotton_A_18589_CDS 38 123 37 131 PF01248.26 Ribosomal_L7Ae Domain 2 87 95 86.3 8.9e-25 1 CL0101
Cotton_A_05994_CDS 188 305 187 306 PF03109.16 ABC1 Family 2 118 119 109.0 1.5e-31 1 CL0016
Cotton_A_09476_CDS 158 431 152 431 PF03151.16 TPT Family 7 290 290 72.0 5e-20 1 CL0184
Cotton_A_26232_CDS 163 253 163 253 PF01190.17 Pollen_Ole_e_I Family 1 99 99 67.6 9.8e-19 1 CL0287
Cotton_A_25718_CDS 15 297 10 298 PF03151.16 TPT Family 7 289 290 55.6 5.2e-15 1 CL0184
Cotton_A_10970_CDS 6 104 4 112 PF00168.30 C2 Domain 3 95 103 57.6 1.3e-15 1 CL0154
Cotton_A_03349_CDS 91 375 91 375 PF00069.25 Pkinase Domain 1 264 264 236.0 4.7e-70 1 CL0016
Cotton_A_40074_CDS 13 61 13 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 45.3 7.2e-12 1 CL0123
Cotton_A_40074_CDS 68 112 68 112 PF00249.31 Myb_DNA-binding Domain 2 46 46 52.3 4.6e-14 1 CL0123
Cotton_A_06950_CDS 105 232 105 233 PF03364.20 Polyketide_cyc Family 1 129 130 71.7 6.3e-20 1 CL0209
Cotton_A_16312_CDS 61 111 58 112 PF01344.25 Kelch_1 Repeat 4 45 46 23.3 3.5e-05 1 CL0186
Cotton_A_09627_CDS 3 60 1 61 PF01501.20 Glyco_transf_8 Family 197 255 256 43.3 3e-11 1 CL0110
Cotton_A_21387_CDS 51 127 42 128 PF02298.17 Cu_bind_like Domain 7 83 84 80.9 5.3e-23 1 CL0026
Cotton_A_38953_CDS 39 66 39 67 PF00642.24 zf-CCCH Family 1 26 27 28.7 8.5e-07 1 CL0537
Cotton_A_07575_CDS 296 349 294 349 PF04083.16 Abhydro_lipase Family 3 64 64 45.2 5e-12 1 CL0028
Cotton_A_16841_CDS 15 48 15 52 PF12937.7 F-box-like Domain 1 34 48 25.1 1.2e-05 1 CL0271
Cotton_A_16841_CDS 278 314 278 339 PF03478.18 DUF295 Domain 1 40 55 23.8 2.4e-05 1 No_clan
Cotton_A_31391_CDS 31 155 26 169 PF03004.14 Transposase_24 Family 12 140 142 61.9 6.8e-17 1 No_clan
Cotton_A_07268_CDS 49 346 45 347 PF03151.16 TPT Family 5 289 290 47.2 1.9e-12 1 CL0184
Cotton_A_31057_CDS 274 304 268 305 PF00400.32 WD40 Repeat 8 37 38 28.4 2.1e-06 1 CL0186
Cotton_A_31057_CDS 372 407 371 408 PF00400.32 WD40 Repeat 2 37 38 30.0 6.2e-07 1 CL0186
Cotton_A_31057_CDS 413 449 412 449 PF00400.32 WD40 Repeat 2 37 38 25.5 1.7e-05 1 CL0186
Cotton_A_25079_CDS 1 447 1 450 PF00118.24 Cpn60_TCP1 Family 48 488 491 460.1 7.8e-138 1 No_clan
Cotton_A_12479_CDS 106 182 94 194 PF01453.24 B_lectin Domain 13 93 105 40.0 4.4e-10 1 No_clan
Cotton_A_01040_CDS 87 255 81 265 PF03462.18 PCRF Domain 7 176 193 94.3 8.4e-27 1 No_clan
Cotton_A_01040_CDS 307 385 281 386 PF00472.20 RF-1 Family 32 115 116 26.8 3.8e-06 1 CL0337
Cotton_A_34303_CDS 28 106 28 111 PF00411.19 Ribosomal_S11 Family 1 79 110 103.7 7e-30 1 CL0267
Cotton_A_21444_CDS 58 363 56 364 PF00291.25 PALP Family 3 293 294 206.0 8e-61 1 CL0063
Cotton_A_08197_CDS 81 460 81 462 PF00916.20 Sulfate_transp Family 1 378 380 437.1 4.5e-131 1 CL0062
Cotton_A_08197_CDS 513 631 513 631 PF01740.21 STAS Domain 1 117 117 113.1 5.2e-33 1 CL0502
Cotton_A_25893_CDS 77 243 54 243 PF00704.28 Glyco_hydro_18 Domain 90 312 312 59.6 4e-16 1 CL0058
Cotton_A_15788_CDS 103 155 102 161 PF00403.26 HMA Domain 2 58 62 49.2 5.3e-13 1 No_clan
Cotton_A_16452_CDS 105 148 104 148 PF13639.6 zf-RING_2 Domain 2 44 44 46.7 2.9e-12 1 CL0229
Cotton_A_39036_CDS 82 320 81 320 PF04078.13 Rcd1 Family 21 259 259 408.2 1.2e-122 1 No_clan
Cotton_A_29592_CDS 26 208 23 209 PF01012.21 ETF Domain 4 181 182 154.4 2.9e-45 1 CL0039
Cotton_A_22408_CDS 29 92 29 97 PF01583.20 APS_kinase Domain 1 64 158 91.6 4.4e-26 1 CL0023
Cotton_A_22408_CDS 112 187 106 197 PF01583.20 APS_kinase Domain 64 134 158 82.9 2.2e-23 1 CL0023
Cotton_A_29792_CDS 85 154 85 154 PF01287.20 eIF-5a Domain 1 69 69 103.4 5.2e-30 1 CL0021
Cotton_A_05743_CDS 60 156 60 169 PF14226.6 DIOX_N Family 1 99 118 82.8 3.1e-23 1 CL0029
Cotton_A_05743_CDS 215 310 210 310 PF03171.20 2OG-FeII_Oxy Domain 7 101 101 92.8 1.5e-26 1 CL0029
Cotton_A_00536_CDS 44 341 44 345 PF00657.22 Lipase_GDSL Family 1 195 200 35.0 1.3e-08 1 CL0264
Cotton_A_33020_CDS 25 65 24 66 PF08263.12 LRRNT_2 Family 2 40 41 39.8 4e-10 1 No_clan
Cotton_A_33020_CDS 146 206 146 207 PF13855.6 LRR_8 Repeat 1 60 61 30.4 2.5e-07 1 CL0022
Cotton_A_33020_CDS 423 650 419 710 PF00069.25 Pkinase Domain 6 212 264 113.8 8.7e-33 1 CL0016
Cotton_A_34076_CDS 84 284 84 287 PF13460.6 NAD_binding_10 Domain 1 181 184 64.2 1.4e-17 1 CL0063
Cotton_A_00925_CDS 34 386 34 386 PF12819.7 Malectin_like Domain 1 336 336 130.3 9e-38 1 CL0202
Cotton_A_00925_CDS 477 670 472 742 PF07714.17 Pkinase_Tyr Domain 6 203 259 161.8 1.9e-47 1 CL0016
Cotton_A_13487_CDS 26 78 26 81 PF02365.15 NAM Family 1 62 126 41.2 2.9e-10 1 No_clan
Cotton_A_10553_CDS 32 344 32 346 PF00332.18 Glyco_hydro_17 Domain 1 311 313 285.0 8.9e-85 1 CL0058
Cotton_A_10553_CDS 383 453 383 454 PF07983.13 X8 Domain 1 75 76 78.8 3.6e-22 1 No_clan
Cotton_A_31172_CDS 6 231 1 233 PF00931.22 NB-ARC Domain 17 250 252 141.5 2.6e-41 1 CL0023
Cotton_A_30331_CDS 11 49 9 53 PF00646.33 F-box Domain 4 42 48 21.8 0.00012 1 CL0271
Cotton_A_30331_CDS 219 312 215 336 PF08268.12 FBA_3 Domain 6 88 128 30.0 4.2e-07 1 CL0162
Cotton_A_07821_CDS 25 58 24 59 PF08263.12 LRRNT_2 Family 3 40 41 22.4 0.00011 1 No_clan
Cotton_A_07821_CDS 87 144 86 146 PF13855.6 LRR_8 Repeat 2 59 61 47.6 1e-12 1 CL0022
Cotton_A_07821_CDS 327 385 326 386 PF13855.6 LRR_8 Repeat 2 60 61 31.3 1.3e-07 1 CL0022
Cotton_A_07821_CDS 606 875 604 879 PF00069.25 Pkinase Domain 3 258 264 92.7 2.3e-26 1 CL0016
Cotton_A_37690_CDS 95 172 76 184 PF00085.20 Thioredoxin Domain 17 93 103 58.8 4.2e-16 1 CL0172
Cotton_A_34489_CDS 31 201 31 201 PF01397.21 Terpene_synth Domain 1 192 192 206.9 2.3e-61 1 No_clan
Cotton_A_34489_CDS 232 497 232 497 PF03936.16 Terpene_synth_C Domain 1 267 267 346.9 7.1e-104 1 CL0613
Cotton_A_06019_CDS 24 71 22 83 PF00170.21 bZIP_1 Family 5 52 64 36.1 4.9e-09 1 CL0018
Cotton_A_34068_CDS 6 108 5 112 PF00635.26 Motile_Sperm Domain 2 105 109 98.3 2.1e-28 1 CL0556
Cotton_A_38925_CDS 136 199 135 206 PF01842.25 ACT Domain 2 59 67 30.6 2e-07 1 CL0070
Cotton_A_38925_CDS 370 421 369 438 PF01842.25 ACT Domain 2 53 67 33.3 3e-08 1 CL0070
Cotton_A_09914_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 50.1 2.3e-13 1 CL0123
Cotton_A_09914_CDS 71 111 67 112 PF00249.31 Myb_DNA-binding Domain 5 45 46 51.7 7.2e-14 1 CL0123
Cotton_A_29834_CDS 42 92 41 92 PF00249.31 Myb_DNA-binding Domain 2 46 46 31.6 1.4e-07 1 CL0123
Cotton_A_29834_CDS 137 183 136 183 PF14379.6 Myb_CC_LHEQLE Family 2 48 48 86.5 6.8e-25 1 No_clan
Cotton_A_05201_CDS 7 168 5 168 PF03467.15 Smg4_UPF3 Family 3 174 174 169.4 7.1e-50 1 CL0221
Cotton_A_33148_CDS 4 81 1 87 PF00368.18 HMG-CoA_red Family 242 316 367 98.9 3.1e-28 1 No_clan
Cotton_A_20248_CDS 87 243 87 243 PF04759.13 DUF617 Family 1 163 163 228.1 5.7e-68 1 No_clan
Cotton_A_39394_CDS 20 81 4 81 PF12796.7 Ank_2 Repeat 30 83 83 33.1 6.2e-08 1 CL0465
Cotton_A_39394_CDS 88 207 88 214 PF12796.7 Ank_2 Repeat 1 79 83 63.1 2.8e-17 1 CL0465
Cotton_A_39394_CDS 223 268 207 282 PF12796.7 Ank_2 Repeat 25 64 83 31.7 1.7e-07 1 CL0465
Cotton_A_00943_CDS 16 54 16 64 PF02892.15 zf-BED Domain 1 39 44 25.0 1.5e-05 1 CL0361
Cotton_A_00943_CDS 220 371 220 371 PF04937.15 DUF659 Family 1 152 152 188.3 7.2e-56 1 No_clan
Cotton_A_00943_CDS 586 657 570 658 PF05699.14 Dimer_Tnp_hAT Domain 17 85 86 36.8 2.6e-09 1 No_clan
Cotton_A_32692_CDS 10 181 9 182 PF01871.17 AMMECR1 Family 2 165 166 161.5 1.4e-47 1 No_clan
Cotton_A_04991_CDS 56 104 53 104 PF05498.11 RALF Family 3 51 65 36.3 8.5e-09 1 No_clan
Cotton_A_31975_CDS 60 223 60 223 PF04833.15 COBRA Family 1 165 165 248.5 2.8e-74 1 No_clan
Cotton_A_14030_CDS 78 311 70 338 PF02353.20 CMAS Family 11 245 273 154.4 3.5e-45 1 CL0063
Cotton_A_33518_CDS 85 309 85 312 PF01063.19 Aminotran_4 Domain 1 220 223 138.6 2.7e-40 1 No_clan
Cotton_A_37922_CDS 123 142 123 148 PF13912.6 zf-C2H2_6 Domain 2 21 27 22.0 0.00011 1 CL0361
Cotton_A_13394_CDS 54 252 53 252 PF00834.19 Ribul_P_3_epim Domain 2 198 198 297.6 3.3e-89 1 CL0036
Cotton_A_18804_CDS 308 489 307 494 PF02902.19 Peptidase_C48 Domain 2 208 216 147.2 6.1e-43 1 CL0125
Cotton_A_30884_CDS 72 305 72 305 PF01946.17 Thi4 Family 1 235 235 383.4 3e-115 1 CL0063
Cotton_A_36273_CDS 45 170 45 196 PF04652.16 Vta1 Family 1 121 145 58.1 9.1e-16 1 No_clan
Cotton_A_36273_CDS 256 365 252 366 PF14288.6 FKS1_dom1 Family 18 128 129 61.6 9e-17 1 No_clan
Cotton_A_36273_CDS 967 1054 966 1060 PF02364.15 Glucan_synthase Family 2 91 819 99.9 1.1e-28 1 CL0111
Cotton_A_36273_CDS 1057 1659 1049 1667 PF02364.15 Glucan_synthase Family 124 730 819 710.4 3.1e-213 1 CL0111
Cotton_A_08631_CDS 35 243 35 243 PF01734.22 Patatin Family 1 204 204 83.6 2e-23 1 CL0323
Cotton_A_04435_CDS 282 446 245 456 PF00201.18 UDPGT Family 266 407 499 72.5 3e-20 1 CL0113
Cotton_A_06850_CDS 381 491 363 492 PF17177.4 PPR_long Domain 66 176 212 36.1 4.2e-09 1 CL0020
Cotton_A_06850_CDS 551 576 550 576 PF01535.20 PPR Family 6 31 31 14.4 0.033 1 CL0020
Cotton_A_06850_CDS 582 610 581 611 PF01535.20 PPR Family 2 30 31 12.2 0.17 1 CL0020
Cotton_A_06850_CDS 656 681 655 681 PF01535.20 PPR Family 6 31 31 9.7 1.1 1 CL0020
Cotton_A_26566_CDS 203 361 203 363 PF01764.25 Lipase_3 Family 1 140 142 133.1 6e-39 1 CL0028
Cotton_A_16221_CDS 400 445 400 457 PF13915.6 DUF4210 Domain 1 44 68 23.7 5.3e-05 1 No_clan
Cotton_A_16221_CDS 628 709 628 709 PF13889.6 Chromosome_seg Family 1 55 55 86.6 9.3e-25 1 No_clan
Cotton_A_14635_CDS 59 165 44 176 PF14580.6 LRR_9 Repeat 53 159 175 48.0 9.4e-13 1 CL0022
Cotton_A_18733_CDS 8 178 8 179 PF00071.22 Ras Domain 1 161 162 177.9 1.1e-52 1 CL0023
Cotton_A_26765_CDS 153 179 152 181 PF01535.20 PPR Family 3 29 31 10.1 0.77 1 CL0020
Cotton_A_26765_CDS 220 261 218 266 PF13041.6 PPR_2 Repeat 3 44 50 34.0 2.4e-08 1 CL0020
Cotton_A_26765_CDS 327 352 325 354 PF01535.20 PPR Family 3 28 31 13.1 0.091 1 CL0020
Cotton_A_26765_CDS 362 401 358 406 PF13041.6 PPR_2 Repeat 6 45 50 43.9 2e-11 1 CL0020
Cotton_A_26765_CDS 441 466 438 467 PF01535.20 PPR Family 5 30 31 12.6 0.13 1 CL0020
Cotton_A_02710_CDS 28 132 27 133 PF13947.6 GUB_WAK_bind Domain 2 105 106 74.3 1.2e-20 1 No_clan
Cotton_A_04388_CDS 2 159 1 159 PF07468.11 Agglutinin Domain 2 153 153 66.1 3.9e-18 1 CL0066
Cotton_A_04388_CDS 207 292 165 292 PF07468.11 Agglutinin Domain 68 153 153 41.6 1.4e-10 1 CL0066
Cotton_A_04388_CDS 302 425 297 432 PF07468.11 Agglutinin Domain 7 144 153 52.9 4.7e-14 1 CL0066
Cotton_A_04388_CDS 446 595 416 602 PF03318.13 ETX_MTX2 Family 18 167 228 27.8 2e-06 1 CL0345
Cotton_A_29766_CDS 13 82 1 85 PF00006.25 ATP-synt_ab Domain 65 134 213 35.6 7.3e-09 1 CL0023
Cotton_A_07920_CDS 176 311 176 312 PF05773.22 RWD Domain 1 115 116 83.3 1.5e-23 1 CL0208
Cotton_A_07920_CDS 438 496 438 496 PF01485.21 IBR Domain 1 62 62 40.4 2.5e-10 1 CL0229
Cotton_A_07920_CDS 535 575 519 582 PF01485.21 IBR Domain 14 55 62 29.6 5.9e-07 1 CL0229
Cotton_A_07681_CDS 331 356 330 360 PF05553.11 DUF761 Family 3 28 36 38.4 6.5e-10 1 No_clan
Cotton_A_02262_CDS 23 423 22 424 PF01490.18 Aa_trans Family 2 408 409 298.1 8.7e-89 1 CL0062
Cotton_A_00804_CDS 19 88 18 88 PF00076.22 RRM_1 Domain 2 70 70 70.4 8.2e-20 1 CL0221
Cotton_A_32710_CDS 85 132 85 134 PF13041.6 PPR_2 Repeat 1 48 50 38.1 1.3e-09 1 CL0020
Cotton_A_32710_CDS 186 216 186 216 PF01535.20 PPR Family 1 31 31 16.0 0.011 1 CL0020
Cotton_A_32710_CDS 258 281 258 284 PF01535.20 PPR Family 4 27 31 11.0 0.42 1 CL0020
Cotton_A_32710_CDS 356 379 356 381 PF01535.20 PPR Family 4 27 31 15.8 0.012 1 CL0020
Cotton_A_32710_CDS 382 426 381 430 PF13041.6 PPR_2 Repeat 2 46 50 32.7 6.4e-08 1 CL0020
Cotton_A_32710_CDS 558 578 558 579 PF01535.20 PPR Family 4 24 31 11.2 0.36 1 CL0020
Cotton_A_32710_CDS 584 632 583 652 PF13041.6 PPR_2 Repeat 2 50 50 48.0 1e-12 1 CL0020
Cotton_A_32710_CDS 659 682 657 685 PF01535.20 PPR Family 3 26 31 11.1 0.38 1 CL0020
Cotton_A_04081_CDS 48 113 48 113 PF00191.20 Annexin Family 1 66 66 49.0 4.7e-13 1 No_clan
Cotton_A_04081_CDS 148 192 132 193 PF00191.20 Annexin Family 11 55 66 30.5 2.9e-07 1 No_clan
Cotton_A_07202_CDS 26 99 26 103 PF00011.21 HSP20 Family 1 65 102 38.0 1.4e-09 1 CL0190
Cotton_A_21741_CDS 311 413 310 414 PF01399.27 PCI Domain 2 104 105 75.9 3.1e-21 1 CL0123
Cotton_A_21741_CDS 417 482 417 483 PF08375.11 Rpn3_C Family 1 66 67 93.4 8.6e-27 1 No_clan
Cotton_A_10973_CDS 13 49 12 53 PF00297.22 Ribosomal_L3 Family 31 67 369 41.3 9.2e-11 1 CL0575
Cotton_A_06519_CDS 55 103 54 139 PF14223.6 Retrotran_gag_2 Family 2 50 138 28.5 1e-06 1 CL0523
Cotton_A_06519_CDS 170 230 170 235 PF13976.6 gag_pre-integrs Domain 1 58 67 42.8 3.4e-11 1 No_clan
Cotton_A_15098_CDS 99 405 98 406 PF13249.6 SQHop_cyclase_N Domain 2 290 291 136.3 1.1e-39 1 CL0059
Cotton_A_15098_CDS 417 609 415 613 PF13243.6 SQHop_cyclase_C Domain 4 179 319 53.6 1.8e-14 1 CL0059
Cotton_A_15098_CDS 615 695 610 695 PF13243.6 SQHop_cyclase_C Domain 240 319 319 44.3 1.2e-11 1 CL0059
Cotton_A_02043_CDS 337 597 336 597 PF00069.25 Pkinase Domain 2 264 264 223.7 2.6e-66 1 CL0016
Cotton_A_01733_CDS 177 292 172 292 PF13456.6 RVT_3 Domain 11 124 124 60.8 1.1e-16 1 CL0219
Cotton_A_01733_CDS 382 453 380 453 PF01485.21 IBR Domain 3 62 62 39.4 5.3e-10 1 CL0229
Cotton_A_01733_CDS 468 521 464 523 PF01485.21 IBR Domain 7 62 62 31.8 1.3e-07 1 CL0229
Cotton_A_12316_CDS 54 183 54 189 PF03188.16 Cytochrom_B561 Family 1 130 137 24.1 3.1e-05 1 CL0328
Cotton_A_11768_CDS 25 49 23 51 PF01535.20 PPR Family 3 27 31 19.5 0.00078 1 CL0020
Cotton_A_11768_CDS 65 85 59 86 PF01535.20 PPR Family 10 30 31 12.9 0.1 1 CL0020
Cotton_A_11768_CDS 88 117 84 117 PF12854.7 PPR_1 Repeat 5 34 34 25.6 7.4e-06 1 CL0020
Cotton_A_11768_CDS 125 172 123 172 PF13041.6 PPR_2 Repeat 3 50 50 42.8 4.4e-11 1 CL0020
Cotton_A_35816_CDS 34 109 34 109 PF05922.16 Inhibitor_I9 Domain 1 82 82 47.7 1.8e-12 1 CL0570
Cotton_A_35816_CDS 134 584 133 604 PF00082.22 Peptidase_S8 Domain 3 285 298 162.6 1.2e-47 1 No_clan
Cotton_A_35816_CDS 372 459 369 459 PF02225.22 PA Family 4 89 89 37.6 1.6e-09 1 CL0364
Cotton_A_35816_CDS 659 764 659 765 PF17766.1 fn3_6 Domain 1 98 99 82.8 1.5e-23 1 CL0159
Cotton_A_23886_CDS 111 432 41 446 PF07690.16 MFS_1 Family 34 329 353 133.4 9.1e-39 1 CL0015
Cotton_A_18024_CDS 185 258 174 272 PF06325.13 PrmA Family 161 232 296 31.0 1.7e-07 1 CL0063
Cotton_A_25650_CDS 521 757 521 758 PF01734.22 Patatin Family 1 203 204 72.5 5.1e-20 1 CL0323
Cotton_A_08867_CDS 3 60 1 61 PF00076.22 RRM_1 Domain 12 69 70 39.7 3.1e-10 1 CL0221
Cotton_A_24895_CDS 54 136 52 137 PF13837.6 Myb_DNA-bind_4 Domain 3 89 90 67.4 1.1e-18 1 CL0123
Cotton_A_12289_CDS 235 292 234 292 PF03106.15 WRKY Domain 2 59 59 85.9 1.6e-24 1 CL0274
Cotton_A_16000_CDS 25 198 25 198 PF00197.18 Kunitz_legume Domain 1 175 175 211.0 1.2e-62 1 CL0066
Cotton_A_39690_CDS 59 146 52 146 PF00006.25 ATP-synt_ab Domain 22 100 213 58.0 1e-15 1 CL0023
Cotton_A_01603_CDS 10 192 7 192 PF01167.18 Tub Domain 73 241 241 156.6 8.6e-46 1 CL0395
Cotton_A_15039_CDS 231 344 231 345 PF00175.21 NAD_binding_1 Domain 1 108 109 95.1 3.8e-27 1 CL0091
Cotton_A_31415_CDS 30 72 28 72 PF08263.12 LRRNT_2 Family 3 41 41 37.1 2.8e-09 1 No_clan
Cotton_A_31415_CDS 123 183 122 183 PF13855.6 LRR_8 Repeat 2 61 61 33.3 3e-08 1 CL0022
Cotton_A_31415_CDS 195 214 194 215 PF00560.33 LRR_1 Repeat 3 22 23 12.0 0.25 1 CL0022
Cotton_A_31415_CDS 358 629 355 632 PF00069.25 Pkinase Domain 5 259 264 112.3 2.5e-32 1 CL0016
Cotton_A_20954_CDS 9 618 9 618 PF00012.20 HSP70 Family 1 599 599 881.8 1.8e-265 1 CL0108
Cotton_A_16500_CDS 16 222 15 222 PF01015.18 Ribosomal_S3Ae Family 2 202 202 315.2 1.6e-94 1 No_clan
Cotton_A_00874_CDS 6 100 6 115 PF14226.6 DIOX_N Family 1 95 118 57.0 3e-15 1 CL0029
Cotton_A_00874_CDS 160 257 158 257 PF03171.20 2OG-FeII_Oxy Domain 3 101 101 97.9 3.9e-28 1 CL0029
Cotton_A_15311_CDS 71 110 63 111 PF15801.5 zf-C6H2 Domain 8 46 47 34.4 2.1e-08 1 CL0175
Cotton_A_15311_CDS 256 587 256 587 PF03372.23 Exo_endo_phos Domain 1 233 233 98.4 4.4e-28 1 CL0530
Cotton_A_28019_CDS 342 536 341 560 PF13632.6 Glyco_trans_2_3 Domain 2 192 197 76.0 3.5e-21 1 CL0110
Cotton_A_29813_CDS 6 62 3 68 PF00407.19 Bet_v_1 Domain 5 60 151 36.0 5.9e-09 1 CL0209
Cotton_A_22961_CDS 28 71 28 71 PF03470.14 zf-XS Domain 1 43 43 63.2 2e-17 1 No_clan
Cotton_A_22961_CDS 100 212 100 212 PF03468.14 XS Domain 1 113 113 129.3 7.8e-38 1 CL0221
Cotton_A_22961_CDS 317 359 317 360 PF03470.14 zf-XS Domain 1 42 43 56.5 2.3e-15 1 No_clan
Cotton_A_22961_CDS 405 446 405 446 PF03470.14 zf-XS Domain 1 43 43 53.2 2.5e-14 1 No_clan
Cotton_A_22961_CDS 475 586 475 587 PF03468.14 XS Domain 1 112 113 132.6 7.1e-39 1 CL0221
Cotton_A_22961_CDS 864 994 864 995 PF03469.14 XH Domain 1 130 131 170.7 1.2e-50 1 No_clan
Cotton_A_15616_CDS 133 183 133 183 PF08711.11 Med26 Domain 1 53 53 50.7 1.4e-13 1 No_clan
Cotton_A_09760_CDS 8 108 1 108 PF00583.25 Acetyltransf_1 Family 40 117 117 57.7 1.2e-15 1 CL0257
Cotton_A_31638_CDS 58 241 57 269 PF10609.9 ParA Family 2 181 246 275.1 4.7e-82 1 CL0023
Cotton_A_31638_CDS 278 341 261 342 PF10609.9 ParA Family 184 245 246 31.8 9.2e-08 1 CL0023
Cotton_A_12483_CDS 75 158 61 165 PF12796.7 Ank_2 Repeat 2 76 83 40.7 2.8e-10 1 CL0465
Cotton_A_12483_CDS 196 453 192 454 PF07714.17 Pkinase_Tyr Domain 16 258 259 158.0 2.7e-46 1 CL0016
Cotton_A_05103_CDS 22 227 9 227 PF00141.23 peroxidase Domain 11 229 229 152.7 1.2e-44 1 CL0617
Cotton_A_33248_CDS 35 96 34 127 PF00004.29 AAA Domain 2 72 132 37.0 4.1e-09 1 CL0023
Cotton_A_18640_CDS 155 202 122 203 PF08241.12 Methyltransf_11 Domain 47 95 96 33.0 7.3e-08 1 CL0063
Cotton_A_29296_CDS 21 53 20 53 PF12854.7 PPR_1 Repeat 2 34 34 36.6 2.7e-09 1 CL0020
Cotton_A_29296_CDS 60 108 59 108 PF13041.6 PPR_2 Repeat 2 50 50 65.9 2.6e-18 1 CL0020
Cotton_A_29296_CDS 129 172 129 175 PF13041.6 PPR_2 Repeat 1 44 50 35.3 9.5e-09 1 CL0020
Cotton_A_07672_CDS 24 178 24 180 PF00071.22 Ras Domain 1 160 162 200.6 1.2e-59 1 CL0023
Cotton_A_03744_CDS 237 270 237 270 PF12579.8 DUF3755 Family 1 34 34 55.4 3.3e-15 1 No_clan
Cotton_A_12021_CDS 77 471 76 471 PF01960.18 ArgJ Family 2 376 376 464.0 2.8e-139 1 CL0635
Cotton_A_11944_CDS 175 208 175 208 PF00515.28 TPR_1 Repeat 1 34 34 30.2 2.5e-07 1 CL0020
Cotton_A_03979_CDS 1 75 1 79 PF05922.16 Inhibitor_I9 Domain 1 76 82 64.4 1.1e-17 1 CL0570
Cotton_A_03979_CDS 113 596 113 596 PF00082.22 Peptidase_S8 Domain 1 298 298 142.0 2.4e-41 1 No_clan
Cotton_A_03979_CDS 361 449 359 453 PF02225.22 PA Family 3 85 89 30.9 2e-07 1 CL0364
Cotton_A_03979_CDS 647 744 647 744 PF17766.1 fn3_6 Domain 1 99 99 87.9 4e-25 1 CL0159
Cotton_A_13289_CDS 13 97 13 102 PF00069.25 Pkinase Domain 1 84 264 67.5 1.2e-18 1 CL0016
Cotton_A_09195_CDS 34 126 33 128 PF14363.6 AAA_assoc Family 2 94 96 86.6 1.1e-24 1 No_clan
Cotton_A_09195_CDS 250 395 249 396 PF00004.29 AAA Domain 2 131 132 56.8 2.9e-15 1 CL0023
Cotton_A_13103_CDS 81 239 81 239 PF17835.1 NOG1_N Domain 1 160 160 129.6 9.9e-38 1 CL0669
Cotton_A_13103_CDS 245 301 243 334 PF02421.18 FeoB_N Domain 3 59 156 35.6 6.2e-09 1 CL0023
Cotton_A_13103_CDS 310 366 309 366 PF06858.14 NOG1 Family 2 58 58 69.2 1.9e-19 1 CL0023
Cotton_A_37969_CDS 77 208 75 209 PF03004.14 Transposase_24 Family 3 141 142 89.3 2.4e-25 1 No_clan
Cotton_A_35671_CDS 29 235 28 236 PF05700.11 BCAS2 Family 2 205 206 230.7 1.3e-68 1 No_clan
Cotton_A_39389_CDS 398 524 398 524 PF00134.23 Cyclin_N Domain 1 127 127 132.8 5.6e-39 1 CL0065
Cotton_A_39389_CDS 526 649 526 650 PF02984.19 Cyclin_C Domain 1 118 119 93.9 6.7e-27 1 CL0065
Cotton_A_05063_CDS 59 267 55 267 PF00230.20 MIP Family 7 227 227 201.8 1.2e-59 1 No_clan
Cotton_A_01764_CDS 27 310 27 312 PF12697.7 Abhydrolase_6 Domain 1 218 220 79.0 7.8e-22 1 CL0028
Cotton_A_03091_CDS 24 290 15 295 PF03151.16 TPT Family 12 277 290 42.1 6.4e-11 1 CL0184
Cotton_A_16084_CDS 196 238 196 238 PF13639.6 zf-RING_2 Domain 1 43 44 44.0 2e-11 1 CL0229
Cotton_A_18990_CDS 87 407 86 410 PF02374.15 ArsA_ATPase Domain 2 302 305 243.2 3.4e-72 1 CL0023
Cotton_A_21372_CDS 14 80 10 142 PF03942.15 DTW Domain 13 78 198 31.6 1.2e-07 1 No_clan
Cotton_A_21372_CDS 196 264 192 264 PF03942.15 DTW Domain 130 198 198 66.9 1.9e-18 1 No_clan
Cotton_A_16937_CDS 35 156 33 156 PF13902.6 R3H-assoc Domain 4 134 134 85.5 4.2e-24 1 No_clan
Cotton_A_20361_CDS 2 223 1 225 PF00069.25 Pkinase Domain 53 260 264 128.0 4.1e-37 1 CL0016
Cotton_A_07544_CDS 145 220 145 221 PF02179.16 BAG Family 1 74 75 62.1 5.1e-17 1 No_clan
Cotton_A_15041_CDS 17 440 13 441 PF00501.28 AMP-binding Family 5 422 423 269.6 3.7e-80 1 CL0378
Cotton_A_15041_CDS 449 542 449 542 PF13193.6 AMP-binding_C Domain 1 76 76 38.5 1.7e-09 1 CL0531
Cotton_A_28416_CDS 10 57 10 57 PF00319.18 SRF-TF Domain 1 48 48 94.3 2.2e-27 1 No_clan
Cotton_A_23348_CDS 192 265 181 273 PF00201.18 UDPGT Family 334 409 499 37.0 1.8e-09 1 CL0113
Cotton_A_35187_CDS 131 392 130 392 PF00069.25 Pkinase Domain 2 264 264 241.7 8.3e-72 1 CL0016
Cotton_A_04110_CDS 229 627 229 628 PF05664.11 DUF810 Family 1 403 686 441.9 4.7e-132 1 No_clan
Cotton_A_04110_CDS 628 699 628 702 PF05664.11 DUF810 Family 468 541 686 53.7 1.3e-14 1 No_clan
Cotton_A_04186_CDS 305 453 255 469 PF00201.18 UDPGT Family 264 388 499 78.2 5.7e-22 1 CL0113
Cotton_A_38951_CDS 7 321 5 324 PF02458.15 Transferase Family 3 292 434 111.5 3.7e-32 1 CL0149
Cotton_A_07756_CDS 2 43 1 48 PF00311.17 PEPcase Family 480 521 795 65.0 3.8e-18 1 CL0151
Cotton_A_24072_CDS 1 161 1 161 PF00223.19 PsaA_PsaB Family 398 567 718 217.1 3.9e-64 1 No_clan
Cotton_A_26842_CDS 27 135 26 136 PF13947.6 GUB_WAK_bind Domain 2 105 106 63.8 2.1e-17 1 No_clan
Cotton_A_26842_CDS 252 353 249 354 PF13947.6 GUB_WAK_bind Domain 6 105 106 51.8 1.1e-13 1 No_clan
Cotton_A_09928_CDS 70 204 69 204 PF04116.13 FA_hydroxylase Family 2 133 133 109.3 1.8e-31 1 No_clan
Cotton_A_36726_CDS 1 67 1 69 PF00817.20 IMS Family 3 73 150 61.8 7.3e-17 1 No_clan
Cotton_A_36726_CDS 67 127 61 129 PF00817.20 IMS Family 87 148 150 60.0 2.5e-16 1 No_clan
Cotton_A_02622_CDS 43 335 43 337 PF00850.19 Hist_deacetyl Domain 1 305 307 247.8 1.7e-73 1 CL0302
Cotton_A_12777_CDS 27 130 26 130 PF13947.6 GUB_WAK_bind Domain 2 106 106 99.6 1.5e-28 1 No_clan
Cotton_A_12777_CDS 356 555 356 558 PF00069.25 Pkinase Domain 1 197 264 140.0 8.5e-41 1 CL0016
Cotton_A_35490_CDS 46 66 41 71 PF12854.7 PPR_1 Repeat 7 27 34 24.5 1.6e-05 1 CL0020
Cotton_A_35490_CDS 79 128 79 128 PF13041.6 PPR_2 Repeat 1 50 50 62.2 4e-17 1 CL0020
Cotton_A_35490_CDS 150 196 149 198 PF13041.6 PPR_2 Repeat 2 48 50 62.4 3.4e-17 1 CL0020
Cotton_A_35490_CDS 215 247 215 248 PF12854.7 PPR_1 Repeat 1 33 34 38.6 6.4e-10 1 CL0020
Cotton_A_35490_CDS 254 301 254 303 PF13041.6 PPR_2 Repeat 1 48 50 61.3 7.1e-17 1 CL0020
Cotton_A_34455_CDS 53 208 43 209 PF13668.6 Ferritin_2 Domain 15 135 136 29.9 5.4e-07 1 CL0044
Cotton_A_33586_CDS 1 61 1 77 PF12776.7 Myb_DNA-bind_3 Domain 6 67 96 31.7 2.2e-07 1 CL0123
Cotton_A_17621_CDS 44 83 43 84 PF00514.23 Arm Repeat 2 40 41 21.5 0.00017 1 CL0020
Cotton_A_17621_CDS 229 470 229 473 PF01734.22 Patatin Family 1 201 204 76.7 2.7e-21 1 CL0323
Cotton_A_20999_CDS 270 436 90 447 PF00201.18 UDPGT Family 263 407 499 78.8 3.6e-22 1 CL0113
Cotton_A_31204_CDS 476 622 475 622 PF16418.5 CNOT1_HEAT Domain 2 150 150 108.9 2.4e-31 1 No_clan
Cotton_A_31204_CDS 643 819 637 824 PF16417.5 CNOT1_TTP_bind Domain 7 183 189 231.0 6.1e-69 1 No_clan
Cotton_A_31204_CDS 961 1180 960 1184 PF16415.5 CNOT1_CAF1_bind Domain 2 221 225 306.6 8.5e-92 1 No_clan
Cotton_A_31204_CDS 1308 1455 1307 1455 PF12842.7 DUF3819 Domain 2 146 146 165.2 9.1e-49 1 No_clan
Cotton_A_31204_CDS 2042 2413 2041 2413 PF04054.15 Not1 Family 2 368 368 505.0 1.1e-151 1 No_clan
Cotton_A_14138_CDS 398 689 398 689 PF00069.25 Pkinase Domain 1 264 264 251.1 1.1e-74 1 CL0016
Cotton_A_30243_CDS 37 151 12 151 PF00609.19 DAGK_acc Family 56 160 160 76.4 3.1e-21 1 No_clan
Cotton_A_31250_CDS 19 361 9 363 PF00743.19 FMO-like Family 139 445 532 60.5 1e-16 1 CL0063
Cotton_A_10526_CDS 108 355 108 355 PF04873.13 EIN3 Family 1 252 252 426.9 2.1e-128 1 No_clan
Cotton_A_01155_CDS 149 168 149 169 PF18044.1 zf-CCCH_4 Domain 2 21 22 28.9 6.9e-07 1 CL0537
Cotton_A_01155_CDS 298 339 298 342 PF01585.23 G-patch Family 1 42 45 48.2 7.5e-13 1 CL0449
Cotton_A_26882_CDS 21 293 18 294 PF01263.20 Aldose_epim Family 4 300 301 201.5 1.8e-59 1 CL0103
Cotton_A_32237_CDS 6 82 2 85 PF00656.22 Peptidase_C14 Domain 173 245 248 32.8 6.8e-08 1 CL0093
Cotton_A_03931_CDS 52 122 52 123 PF00462.24 Glutaredoxin Domain 1 59 60 31.7 1.3e-07 1 CL0172
Cotton_A_31322_CDS 7 127 1 128 PF00125.24 Histone Domain 8 130 131 80.3 1.6e-22 1 CL0012
Cotton_A_00424_CDS 75 160 74 164 PF03692.15 CxxCxxCC Family 2 82 85 32.1 1.4e-07 1 No_clan
Cotton_A_08647_CDS 55 160 51 162 PF00085.20 Thioredoxin Domain 5 101 103 47.7 1.2e-12 1 CL0172
Cotton_A_39575_CDS 280 349 279 351 PF04564.15 U-box Domain 2 71 73 67.8 6.7e-19 1 CL0229
Cotton_A_09054_CDS 2 42 2 43 PF00832.20 Ribosomal_L39 Family 1 41 42 80.7 4.2e-23 1 No_clan
Cotton_A_01947_CDS 29 105 19 108 PF04535.12 DUF588 Domain 50 129 150 47.1 2.1e-12 1 CL0396
Cotton_A_17419_CDS 9 151 7 158 PF04690.13 YABBY Family 3 152 162 205.5 7.1e-61 1 CL0114
Cotton_A_19277_CDS 129 289 113 313 PF01852.19 START Domain 17 173 209 33.1 3.5e-08 1 CL0209
Cotton_A_05973_CDS 8 77 8 77 PF03876.17 SHS2_Rpb7-N Domain 1 70 70 57.7 1.1e-15 1 CL0319
Cotton_A_05973_CDS 79 200 79 200 PF08292.12 RNA_pol_Rbc25 Domain 1 129 129 77.0 1.5e-21 1 CL0021
Cotton_A_31168_CDS 65 376 65 376 PF13292.6 DXP_synthase_N Family 1 273 273 353.3 7.4e-106 1 CL0254
Cotton_A_31168_CDS 413 574 411 576 PF02779.24 Transket_pyr Domain 3 174 178 140.5 4.3e-41 1 CL0254
Cotton_A_31168_CDS 592 715 592 715 PF02780.20 Transketolase_C Domain 1 124 124 111.1 3.1e-32 1 CL0591
Cotton_A_17807_CDS 478 505 478 505 PF00614.22 PLDc Family 1 28 28 34.1 2e-08 1 CL0479
Cotton_A_17807_CDS 831 949 774 951 PF13091.6 PLDc_2 Domain 48 123 133 32.4 7e-08 1 CL0479
Cotton_A_08757_CDS 25 91 24 94 PF03810.19 IBN_N Family 2 72 74 25.7 8.2e-06 1 CL0020
Cotton_A_08757_CDS 179 379 174 409 PF08506.10 Cse1 Family 19 219 370 25.0 7.7e-06 1 CL0020
Cotton_A_36574_CDS 281 329 281 329 PF14604.6 SH3_9 Domain 1 49 49 42.2 5.2e-11 1 CL0010
Cotton_A_18693_CDS 95 226 90 227 PF00892.20 EamA Family 8 136 137 34.4 2.2e-08 1 CL0184
Cotton_A_24758_CDS 448 637 446 637 PF07910.13 Peptidase_C78 Family 3 212 212 174.1 2.6e-51 1 CL0125
Cotton_A_17155_CDS 51 210 51 211 PF01554.18 MatE Family 1 160 161 106.9 8.1e-31 1 CL0222
Cotton_A_17155_CDS 273 435 273 436 PF01554.18 MatE Family 1 160 161 105.6 2e-30 1 CL0222
Cotton_A_41074_CDS 1 91 1 94 PF00078.27 RVT_1 Family 132 218 222 36.9 2.7e-09 1 CL0027
Cotton_A_41074_CDS 44 111 36 111 PF17917.1 RT_RNaseH Domain 38 105 105 77.1 1.1e-21 1 CL0219
Cotton_A_41074_CDS 151 186 149 192 PF17921.1 Integrase_H2C2 Domain 3 36 58 30.7 2.5e-07 1 CL0361
Cotton_A_06103_CDS 1 218 1 219 PF11955.8 PORR Family 108 325 326 244.2 1.7e-72 1 No_clan
Cotton_A_05442_CDS 92 166 85 166 PF07544.13 Med9 Family 8 80 80 27.8 2e-06 1 No_clan
Cotton_A_16329_CDS 37 217 35 218 PF01105.24 EMP24_GP25L Domain 3 181 182 164.9 1.8e-48 1 CL0521
Cotton_A_27708_CDS 19 145 9 145 PF08613.11 Cyclin Family 33 161 161 138.9 1.8e-40 1 CL0065
Cotton_A_27885_CDS 1 205 1 211 PF06219.12 DUF1005 Family 1 208 437 298.9 6.6e-89 1 No_clan
Cotton_A_29212_CDS 26 514 23 516 PF00083.24 Sugar_tr Family 3 449 452 174.3 3.9e-51 1 CL0015
Cotton_A_39789_CDS 36 209 36 226 PF00067.22 p450 Domain 1 168 463 46.2 2.7e-12 1 No_clan
Cotton_A_39998_CDS 219 273 218 275 PF00226.31 DnaJ Domain 5 55 63 38.5 9.6e-10 1 CL0392
Cotton_A_33706_CDS 57 187 57 187 PF03641.14 Lysine_decarbox Family 1 132 132 157.7 1.5e-46 1 CL0349
Cotton_A_03722_CDS 172 450 171 452 PF03016.15 Exostosin Family 2 298 300 193.0 6.8e-57 1 No_clan
Cotton_A_25203_CDS 127 209 127 212 PF03101.15 FAR1 Domain 1 87 90 82.9 2e-23 1 CL0274
Cotton_A_25203_CDS 332 425 332 426 PF10551.9 MULE Domain 1 95 96 94.2 4.7e-27 1 CL0219
Cotton_A_29726_CDS 278 305 277 306 PF00641.18 zf-RanBP Domain 2 29 30 27.3 1.6e-06 1 CL0167
Cotton_A_29726_CDS 312 338 310 339 PF00641.18 zf-RanBP Domain 3 29 30 22.8 4.2e-05 1 CL0167
Cotton_A_03586_CDS 8 28 7 28 PF13912.6 zf-C2H2_6 Domain 4 24 27 20.1 0.00045 1 CL0361
Cotton_A_03586_CDS 153 175 152 176 PF13912.6 zf-C2H2_6 Domain 2 24 27 26.9 3.5e-06 1 CL0361
Cotton_A_03586_CDS 204 226 203 226 PF13912.6 zf-C2H2_6 Domain 2 24 27 34.4 1.5e-08 1 CL0361
Cotton_A_27878_CDS 24 53 19 53 PF08263.12 LRRNT_2 Family 11 41 41 23.0 7.3e-05 1 No_clan
Cotton_A_27878_CDS 637 906 635 908 PF00069.25 Pkinase Domain 3 260 264 169.1 1.1e-49 1 CL0016
Cotton_A_22910_CDS 10 57 10 57 PF00319.18 SRF-TF Domain 1 48 48 81.5 2.1e-23 1 No_clan
Cotton_A_22910_CDS 71 131 67 142 PF01486.17 K-box Family 5 65 93 57.1 1.5e-15 1 No_clan
Cotton_A_03619_CDS 29 121 28 122 PF05669.12 Med31 Family 2 94 95 121.9 8.5e-36 1 No_clan
Cotton_A_09978_CDS 67 227 67 227 PF01554.18 MatE Family 1 161 161 126.7 6.5e-37 1 CL0222
Cotton_A_09978_CDS 288 451 288 451 PF01554.18 MatE Family 1 161 161 129.4 9.4e-38 1 CL0222
Cotton_A_16662_CDS 1 224 1 225 PF03629.18 SASA Domain 13 225 226 257.9 7.8e-77 1 CL0264
Cotton_A_34798_CDS 21 59 20 61 PF14555.6 UBA_4 Domain 2 40 43 53.0 2.1e-14 1 CL0214
Cotton_A_34798_CDS 238 311 238 311 PF08059.13 SEP Domain 1 76 76 87.0 9.6e-25 1 No_clan
Cotton_A_34798_CDS 349 423 346 424 PF00789.20 UBX Domain 5 80 81 57.7 1e-15 1 CL0072
Cotton_A_19209_CDS 210 268 210 268 PF03106.15 WRKY Domain 1 59 59 86.1 1.3e-24 1 CL0274
Cotton_A_32813_CDS 30 139 28 145 PF00224.21 PK Family 4 128 348 49.3 3.3e-13 1 CL0151
Cotton_A_32813_CDS 155 184 151 185 PF00224.21 PK Family 228 257 348 22.1 6e-05 1 CL0151
Cotton_A_09039_CDS 1 209 1 210 PF05664.11 DUF810 Family 87 296 686 317.9 1.5e-94 1 No_clan
Cotton_A_09039_CDS 209 324 208 326 PF05664.11 DUF810 Family 329 456 686 87.0 1.2e-24 1 No_clan
Cotton_A_09039_CDS 325 451 324 463 PF05664.11 DUF810 Family 554 676 686 136.0 1.7e-39 1 No_clan
Cotton_A_13004_CDS 17 177 17 178 PF00071.22 Ras Domain 1 161 162 207.1 1.1e-61 1 CL0023
Cotton_A_18455_CDS 13 133 4 135 PF05255.11 UPF0220 Family 27 160 166 83.3 1.4e-23 1 No_clan
Cotton_A_15444_CDS 160 275 159 279 PF02893.20 GRAM Domain 2 109 114 96.5 8.4e-28 1 CL0266
Cotton_A_17560_CDS 55 231 54 231 PF08660.11 Alg14 Family 2 175 175 225.1 5.4e-67 1 CL0113
Cotton_A_03749_CDS 35 224 35 224 PF00445.18 Ribonuclease_T2 Domain 1 182 182 149.6 1.1e-43 1 No_clan
Cotton_A_10185_CDS 147 222 146 224 PF13417.6 GST_N_3 Domain 2 73 75 55.7 4.8e-15 1 CL0172
Cotton_A_10185_CDS 267 339 266 340 PF13417.6 GST_N_3 Domain 3 72 75 36.5 4.9e-09 1 CL0172
Cotton_A_24166_CDS 128 346 118 348 PF01786.17 AOX Family 12 213 215 260.0 1.5e-77 1 CL0044
Cotton_A_06335_CDS 30 159 11 159 PF00248.21 Aldo_ket_red Domain 117 245 294 54.8 7.8e-15 1 No_clan
Cotton_A_13422_CDS 16 64 15 66 PF05365.12 UCR_UQCRX_QCR9 Family 2 50 53 74.7 4.1e-21 1 No_clan
Cotton_A_22358_CDS 18 52 15 57 PF00646.33 F-box Domain 9 43 48 26.1 5.6e-06 1 CL0271
Cotton_A_35304_CDS 77 175 69 179 PF13456.6 RVT_3 Domain 12 110 124 39.3 4.9e-10 1 CL0219
Cotton_A_35304_CDS 206 250 206 252 PF00097.25 zf-C3HC4 Domain 1 39 41 23.2 4.6e-05 1 CL0229
Cotton_A_35304_CDS 284 345 271 345 PF01485.21 IBR Domain 14 62 62 35.8 6.8e-09 1 CL0229
Cotton_A_37317_CDS 18 487 3 500 PF11443.8 DUF2828 Family 138 603 632 562.2 1.1e-168 1 No_clan
Cotton_A_13500_CDS 14 55 8 55 PF05922.16 Inhibitor_I9 Domain 41 82 82 31.7 1.8e-07 1 CL0570
Cotton_A_13500_CDS 76 458 75 489 PF00082.22 Peptidase_S8 Domain 2 296 298 141.6 3e-41 1 No_clan
Cotton_A_13500_CDS 515 556 515 557 PF17766.1 fn3_6 Domain 1 42 99 32.6 6.8e-08 1 CL0159
Cotton_A_20116_CDS 24 89 24 89 PF04431.13 Pec_lyase_N Family 1 56 56 54.8 8e-15 1 No_clan
Cotton_A_20116_CDS 186 369 178 369 PF00544.19 Pec_lyase_C Domain 30 211 211 77.4 1.1e-21 1 CL0268
Cotton_A_11338_CDS 203 300 201 302 PF02362.21 B3 Family 3 99 101 56.6 1.8e-15 1 CL0405
Cotton_A_26544_CDS 30 135 29 135 PF13947.6 GUB_WAK_bind Domain 2 106 106 83.0 2.3e-23 1 No_clan
Cotton_A_26544_CDS 299 337 299 341 PF07645.15 EGF_CA Domain 1 38 42 36.3 4.7e-09 1 CL0001
Cotton_A_26544_CDS 435 698 432 701 PF00069.25 Pkinase Domain 4 258 264 163.8 4.9e-48 1 CL0016
Cotton_A_27366_CDS 414 544 414 544 PF00004.29 AAA Domain 1 132 132 131.7 2.2e-38 1 CL0023
Cotton_A_27366_CDS 570 615 568 641 PF17862.1 AAA_lid_3 Domain 3 34 45 38.1 9.9e-10 1 CL0671
Cotton_A_27366_CDS 617 651 604 651 PF09336.10 Vps4_C Domain 27 61 61 36.1 4.9e-09 1 CL0671
Cotton_A_20465_CDS 16 122 15 125 PF02466.19 Tim17 Family 2 110 111 94.0 7.2e-27 1 No_clan
Cotton_A_29469_CDS 89 513 89 513 PF00026.23 Asp Family 1 315 315 447.5 2.9e-134 1 CL0129
Cotton_A_29469_CDS 323 356 323 356 PF03489.17 SapB_2 Family 1 34 34 44.8 9.9e-12 1 No_clan
Cotton_A_29469_CDS 387 423 386 423 PF05184.15 SapB_1 Domain 2 38 38 46.3 3e-12 1 No_clan
Cotton_A_33136_CDS 68 324 66 326 PF01501.20 Glyco_transf_8 Family 3 254 256 165.1 2.2e-48 1 CL0110
Cotton_A_35397_CDS 29 186 26 187 PF03248.13 Rer1 Family 4 170 171 245.0 3.4e-73 1 No_clan
Cotton_A_23213_CDS 50 182 17 184 PF06978.11 POP1 Family 67 203 205 41.0 2.1e-10 1 No_clan
Cotton_A_23213_CDS 506 582 506 594 PF08170.12 POPLD Domain 1 77 92 60.7 1.3e-16 1 No_clan
Cotton_A_00665_CDS 45 107 45 111 PF02519.14 Auxin_inducible Family 26 86 90 74.4 6.2e-21 1 No_clan
Cotton_A_18936_CDS 53 135 53 135 PF14547.6 Hydrophob_seed Domain 1 85 85 87.1 6.8e-25 1 CL0482
Cotton_A_21532_CDS 23 121 21 131 PF12624.7 Chorein_N Family 3 100 116 50.5 1.9e-13 1 No_clan
Cotton_A_21532_CDS 1889 1982 1887 1982 PF09333.11 ATG_C Family 3 95 96 87.9 4.2e-25 1 No_clan
Cotton_A_27430_CDS 14 62 14 62 PF00249.31 Myb_DNA-binding Domain 1 46 46 51.8 6.6e-14 1 CL0123
Cotton_A_27430_CDS 69 111 68 113 PF00249.31 Myb_DNA-binding Domain 2 44 46 42.0 7.6e-11 1 CL0123
Cotton_A_07496_CDS 16 282 16 282 PF00268.21 Ribonuc_red_sm Domain 1 279 279 399.7 7e-120 1 CL0044
Cotton_A_19341_CDS 50 117 50 118 PF00538.19 Linker_histone Domain 1 73 74 58.8 4.9e-16 1 CL0123
Cotton_A_02016_CDS 92 144 91 145 PF04770.12 ZF-HD_dimer Family 2 54 55 104.9 1.9e-30 1 No_clan
Cotton_A_09706_CDS 31 386 31 386 PF00262.18 Calreticulin Family 1 367 367 474.4 2.1e-142 1 CL0004
Cotton_A_23395_CDS 31 436 31 450 PF04597.14 Ribophorin_I Family 1 417 441 429.4 2e-128 1 No_clan
Cotton_A_03094_CDS 42 285 41 296 PF00931.22 NB-ARC Domain 2 251 252 159.8 6.8e-47 1 CL0023
Cotton_A_26809_CDS 67 146 64 147 PF14547.6 Hydrophob_seed Domain 5 84 85 72.0 3.5e-20 1 CL0482
Cotton_A_03122_CDS 88 232 87 233 PF00675.20 Peptidase_M16 Family 2 148 149 134.8 2.2e-39 1 CL0094
Cotton_A_03122_CDS 239 423 238 425 PF05193.21 Peptidase_M16_C Domain 2 181 183 107.0 1.1e-30 1 CL0094
Cotton_A_28386_CDS 19 153 19 157 PF00179.26 UQ_con Domain 1 135 140 128.8 1.1e-37 1 CL0208
Cotton_A_10158_CDS 20 259 20 259 PF13561.6 adh_short_C2 Domain 1 234 234 210.4 2.6e-62 1 CL0063
Cotton_A_32947_CDS 41 452 21 463 PF00067.22 p450 Domain 33 443 463 225.6 1e-66 1 No_clan
Cotton_A_24794_CDS 18 143 16 143 PF02365.15 NAM Family 2 126 126 120.8 6.6e-35 1 No_clan
Cotton_A_11766_CDS 243 325 223 326 PF02517.16 CPBP Family 8 91 92 64.3 9.7e-18 1 CL0472
Cotton_A_08334_CDS 22 76 22 77 PF04927.12 SMP Family 1 58 59 72.3 3.3e-20 1 No_clan
Cotton_A_08334_CDS 138 194 138 196 PF04927.12 SMP Family 1 57 59 82.5 2.2e-23 1 No_clan
Cotton_A_08334_CDS 203 261 203 262 PF04927.12 SMP Family 1 58 59 72.8 2.4e-20 1 No_clan
Cotton_A_26470_CDS 134 297 134 298 PF14543.6 TAXi_N Domain 1 177 178 169.8 6.7e-50 1 CL0129
Cotton_A_26470_CDS 319 470 319 471 PF14541.6 TAXi_C Domain 1 160 161 113.5 7.9e-33 1 CL0129
Cotton_A_36466_CDS 75 99 75 102 PF05678.14 VQ Motif 1 25 28 43.7 1.3e-11 1 No_clan
Cotton_A_20018_CDS 28 124 27 126 PF00169.29 PH Domain 2 103 105 69.1 3.9e-19 1 CL0266
Cotton_A_32041_CDS 50 71 50 71 PF00096.26 zf-C2H2 Domain 2 23 23 19.4 0.001 1 CL0361
Cotton_A_32041_CDS 98 122 98 122 PF00096.26 zf-C2H2 Domain 1 23 23 16.6 0.0081 1 CL0361
Cotton_A_32041_CDS 167 191 167 191 PF00096.26 zf-C2H2 Domain 1 23 23 19.6 0.00086 1 CL0361
Cotton_A_04882_CDS 1 140 1 159 PF05695.12 DUF825 Family 460 601 1486 255.5 7e-76 1 No_clan
Cotton_A_09061_CDS 79 327 79 328 PF04641.12 Rtf2 Family 1 261 262 242.9 3.7e-72 1 CL0229
Cotton_A_14040_CDS 20 93 20 96 PF07650.17 KH_2 Domain 1 75 78 47.1 1.5e-12 1 CL0007
Cotton_A_14040_CDS 106 188 105 188 PF00189.20 Ribosomal_S3_C Domain 2 83 83 88.4 3.3e-25 1 No_clan
Cotton_A_28895_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 53.2 2.4e-14 1 CL0123
Cotton_A_28895_CDS 67 112 67 112 PF00249.31 Myb_DNA-binding Domain 1 46 46 53.7 1.7e-14 1 CL0123
Cotton_A_10719_CDS 86 137 81 144 PF00931.22 NB-ARC Domain 7 62 252 27.9 1.2e-06 1 CL0023
Cotton_A_24287_CDS 8 242 8 252 PF01370.21 Epimerase Family 1 228 241 100.6 9.4e-29 1 CL0063
Cotton_A_11270_CDS 19 139 14 155 PF10604.9 Polyketide_cyc2 Family 6 119 143 49.9 3.8e-13 1 CL0209
Cotton_A_01158_CDS 58 223 58 231 PF03092.16 BT1 Family 1 168 524 135.7 1.4e-39 1 CL0015
Cotton_A_01158_CDS 266 461 250 479 PF03092.16 BT1 Family 303 508 524 185.7 1e-54 1 CL0015
Cotton_A_10130_CDS 224 318 224 319 PF00565.17 SNase Domain 1 107 108 93.4 1.1e-26 1 CL0049
Cotton_A_00564_CDS 60 277 60 278 PF03181.15 BURP Family 1 214 215 242.5 3.5e-72 1 No_clan
Cotton_A_02274_CDS 18 177 16 179 PF10358.9 NT-C2 Family 6 144 146 48.3 8.5e-13 1 CL0154
Cotton_A_04401_CDS 7 154 6 154 PF02365.15 NAM Family 2 126 126 43.9 4.1e-11 1 No_clan
Cotton_A_27780_CDS 34 76 34 83 PF04145.15 Ctr Family 1 43 148 28.2 2.4e-06 1 No_clan
Cotton_A_27780_CDS 86 134 74 134 PF04145.15 Ctr Family 98 148 148 43.8 3.8e-11 1 No_clan
Cotton_A_38284_CDS 27 130 26 136 PF00072.24 Response_reg Domain 2 105 112 68.6 4.6e-19 1 CL0304
Cotton_A_02180_CDS 14 47 14 84 PF14543.6 TAXi_N Domain 1 34 178 41.2 2.1e-10 1 CL0129
Cotton_A_13633_CDS 72 357 70 358 PF01095.19 Pectinesterase Family 3 297 298 197.7 1.8e-58 1 CL0268
Cotton_A_16897_CDS 14 62 14 62 PF00249.31 Myb_DNA-binding Domain 1 46 46 51.4 8.7e-14 1 CL0123
Cotton_A_16897_CDS 69 111 68 113 PF00249.31 Myb_DNA-binding Domain 2 44 46 37.8 1.6e-09 1 CL0123
Cotton_A_02594_CDS 45 88 43 88 PF13639.6 zf-RING_2 Domain 3 44 44 33.7 3.5e-08 1 CL0229
Cotton_A_32578_CDS 294 350 294 351 PF00847.20 AP2 Domain 1 53 54 36.7 3.6e-09 1 CL0081
Cotton_A_32578_CDS 395 444 393 445 PF00847.20 AP2 Domain 3 53 54 36.8 3.4e-09 1 CL0081
Cotton_A_27138_CDS 9 178 7 180 PF00025.21 Arf Domain 3 173 175 159.0 7.4e-47 1 CL0023
Cotton_A_11354_CDS 88 145 86 146 PF13855.6 LRR_8 Repeat 3 60 61 29.5 4.6e-07 1 CL0022
Cotton_A_11354_CDS 159 217 158 217 PF13855.6 LRR_8 Repeat 2 61 61 27.5 1.9e-06 1 CL0022
Cotton_A_11354_CDS 227 286 227 287 PF13855.6 LRR_8 Repeat 1 60 61 27.7 1.7e-06 1 CL0022
Cotton_A_03273_CDS 1 19 1 19 PF04570.14 zf-FLZ Domain 36 54 54 27.9 1.2e-06 1 CL0175
Cotton_A_28253_CDS 94 288 93 290 PF01762.21 Galactosyl_T Family 2 193 195 104.1 8.3e-30 1 CL0110
Cotton_A_30387_CDS 198 225 189 226 PF00400.32 WD40 Repeat 9 37 38 12.8 0.17 1 CL0186
Cotton_A_30387_CDS 231 266 230 266 PF00400.32 WD40 Repeat 2 37 38 21.3 0.00035 1 CL0186
Cotton_A_30387_CDS 277 312 275 313 PF00400.32 WD40 Repeat 3 37 38 20.2 0.00076 1 CL0186
Cotton_A_30387_CDS 326 356 322 357 PF00400.32 WD40 Repeat 6 37 38 21.5 0.00031 1 CL0186
Cotton_A_30387_CDS 365 407 364 407 PF00400.32 WD40 Repeat 2 38 38 16.3 0.013 1 CL0186
Cotton_A_10777_CDS 102 169 102 171 PF00076.22 RRM_1 Domain 1 67 70 49.0 4e-13 1 CL0221
Cotton_A_10777_CDS 195 265 195 266 PF00076.22 RRM_1 Domain 1 69 70 56.3 2e-15 1 CL0221
Cotton_A_10777_CDS 314 378 314 378 PF00076.22 RRM_1 Domain 1 70 70 70.3 8.8e-20 1 CL0221
Cotton_A_07372_CDS 496 529 496 530 PF01851.22 PC_rep Repeat 1 34 35 27.9 2e-06 1 CL0020
Cotton_A_28671_CDS 245 328 243 328 PF01388.21 ARID Domain 3 90 90 61.1 1.2e-16 1 CL0123
Cotton_A_28671_CDS 455 533 453 536 PF00011.21 HSP20 Family 3 86 102 24.7 2e-05 1 CL0190
Cotton_A_27500_CDS 53 301 53 301 PF07250.11 Glyoxal_oxid_N Family 1 240 240 327.1 4.9e-98 1 No_clan
Cotton_A_27500_CDS 469 562 456 563 PF09118.11 DUF1929 Domain 9 95 96 80.8 6.8e-23 1 CL0159
Cotton_A_21893_CDS 32 267 31 269 PF00262.18 Calreticulin Family 1 253 367 203.0 6.1e-60 1 CL0004
Cotton_A_21893_CDS 269 342 267 342 PF00262.18 Calreticulin Family 293 367 367 77.7 7.3e-22 1 CL0004
Cotton_A_22189_CDS 89 154 62 157 PF00072.24 Response_reg Domain 44 107 112 52.7 4.1e-14 1 CL0304
Cotton_A_15640_CDS 26 202 26 202 PF14215.6 bHLH-MYC_N Family 1 175 175 179.1 9.3e-53 1 CL0161
Cotton_A_15640_CDS 314 359 312 360 PF00010.26 HLH Domain 4 52 53 40.5 1.9e-10 1 No_clan
Cotton_A_36140_CDS 193 306 193 307 PF13962.6 PGG Domain 1 115 116 94.8 2.9e-27 1 No_clan
Cotton_A_30071_CDS 292 362 292 364 PF04564.15 U-box Domain 1 71 73 75.8 2.3e-21 1 CL0229
Cotton_A_30071_CDS 426 464 425 465 PF00514.23 Arm Repeat 2 40 41 29.7 4.4e-07 1 CL0020
Cotton_A_26422_CDS 956 1102 956 1120 PF12816.7 Vps8 Domain 1 154 198 160.1 4.6e-47 1 No_clan
Cotton_A_32494_CDS 277 352 272 352 PF16135.5 Jas Family 8 76 76 29.6 5.9e-07 1 No_clan
Cotton_A_32494_CDS 464 535 461 535 PF16135.5 Jas Family 4 76 76 73.2 1.4e-20 1 No_clan
Cotton_A_33163_CDS 1 138 1 138 PF05514.11 HR_lesion Family 1 138 138 190.2 1.7e-56 1 CL0131
Cotton_A_13845_CDS 193 210 193 210 PF01422.17 zf-NF-X1 Family 1 19 19 17.4 0.0034 1 No_clan
Cotton_A_13845_CDS 245 263 245 263 PF01422.17 zf-NF-X1 Family 1 19 19 17.3 0.0036 1 No_clan
Cotton_A_13845_CDS 298 316 298 316 PF01422.17 zf-NF-X1 Family 1 19 19 11.7 0.2 1 No_clan
Cotton_A_13845_CDS 352 371 352 371 PF01422.17 zf-NF-X1 Family 1 19 19 15.4 0.014 1 No_clan
Cotton_A_13845_CDS 405 423 405 423 PF01422.17 zf-NF-X1 Family 1 19 19 19.6 0.00071 1 No_clan
Cotton_A_13845_CDS 432 442 432 443 PF01422.17 zf-NF-X1 Family 1 11 19 5.4 19 1 No_clan
Cotton_A_23490_CDS 93 131 92 132 PF00514.23 Arm Repeat 2 40 41 28.0 1.5e-06 1 CL0020
Cotton_A_23490_CDS 134 172 133 173 PF00514.23 Arm Repeat 2 40 41 26.7 4e-06 1 CL0020
Cotton_A_23490_CDS 176 213 175 214 PF00514.23 Arm Repeat 3 40 41 25.5 9.2e-06 1 CL0020
Cotton_A_00824_CDS 24 63 23 63 PF08263.12 LRRNT_2 Family 2 41 41 39.8 4.1e-10 1 No_clan
Cotton_A_00824_CDS 90 150 90 150 PF13855.6 LRR_8 Repeat 1 61 61 33.2 3.2e-08 1 CL0022
Cotton_A_00824_CDS 271 541 270 544 PF00069.25 Pkinase Domain 2 259 264 134.7 3.6e-39 1 CL0016
Cotton_A_35399_CDS 23 122 21 122 PF01521.20 Fe-S_biosyn Family 3 111 111 73.1 1.9e-20 1 No_clan
Cotton_A_23335_CDS 84 145 84 145 PF00226.31 DnaJ Domain 1 63 63 95.1 1.9e-27 1 CL0392
Cotton_A_23335_CDS 204 419 203 419 PF01556.18 DnaJ_C Domain 3 148 148 131.0 3.4e-38 1 No_clan
Cotton_A_23335_CDS 229 292 229 292 PF00684.19 DnaJ_CXXCXGXG Domain 1 67 67 44.2 1.8e-11 1 No_clan
Cotton_A_39196_CDS 54 89 51 89 PF00400.32 WD40 Repeat 4 38 38 12.5 0.22 1 CL0186
Cotton_A_39196_CDS 94 130 93 130 PF00400.32 WD40 Repeat 2 38 38 19.9 0.00099 1 CL0186
Cotton_A_39196_CDS 179 214 178 214 PF00400.32 WD40 Repeat 2 38 38 13.1 0.13 1 CL0186
Cotton_A_19135_CDS 62 327 60 327 PF00069.25 Pkinase Domain 3 264 264 217.0 2.9e-64 1 CL0016
Cotton_A_19135_CDS 398 501 398 501 PF14593.6 PH_3 Family 1 101 104 98.9 1.5e-28 1 CL0266
Cotton_A_31202_CDS 294 339 291 339 PF00010.26 HLH Domain 5 53 53 52.1 4.7e-14 1 No_clan
Cotton_A_24764_CDS 63 93 19 93 PF00400.32 WD40 Repeat 10 38 38 13.0 0.14 1 CL0186
Cotton_A_24764_CDS 171 206 170 207 PF00400.32 WD40 Repeat 2 37 38 23.0 0.0001 1 CL0186
Cotton_A_24764_CDS 215 250 213 251 PF00400.32 WD40 Repeat 3 37 38 21.3 0.00035 1 CL0186
Cotton_A_24764_CDS 268 294 262 295 PF00400.32 WD40 Repeat 10 37 38 17.1 0.0078 1 CL0186
Cotton_A_24764_CDS 306 346 304 347 PF00400.32 WD40 Repeat 3 37 38 14.7 0.044 1 CL0186
Cotton_A_06756_CDS 13 600 12 601 PF03321.13 GH3 Family 2 526 527 601.6 1.5e-180 1 CL0378
Cotton_A_08023_CDS 17 64 10 67 PF00676.20 E1_dh Family 250 297 300 29.3 3.8e-07 1 CL0254
Cotton_A_16169_CDS 63 240 48 240 PF07816.11 DUF1645 Family 22 191 191 98.1 9.1e-28 1 No_clan
Cotton_A_22126_CDS 9 460 8 461 PF02458.15 Transferase Family 2 433 434 393.6 9.5e-118 1 CL0149
Cotton_A_23876_CDS 108 459 106 459 PF00155.21 Aminotran_1_2 Domain 3 363 363 158.1 3.5e-46 1 CL0061
Cotton_A_36958_CDS 5 37 5 37 PF14369.6 zinc_ribbon_9 Domain 1 35 35 52.1 5.6e-14 1 CL0167
Cotton_A_36958_CDS 175 217 174 217 PF13639.6 zf-RING_2 Domain 2 44 44 44.4 1.6e-11 1 CL0229
Cotton_A_14056_CDS 63 96 63 96 PF06200.14 tify Domain 1 34 34 62.8 1.3e-17 1 No_clan
Cotton_A_14056_CDS 159 183 159 184 PF09425.10 CCT_2 Motif 1 25 26 46.9 1.8e-12 1 CL0281
Cotton_A_11839_CDS 88 121 83 121 PF00400.32 WD40 Repeat 6 38 38 19.6 0.0013 1 CL0186
Cotton_A_11839_CDS 128 165 126 165 PF00400.32 WD40 Repeat 3 38 38 20.0 0.0009 1 CL0186
Cotton_A_11839_CDS 173 209 169 209 PF00400.32 WD40 Repeat 5 38 38 22.8 0.00012 1 CL0186
Cotton_A_11839_CDS 214 251 213 251 PF00400.32 WD40 Repeat 2 38 38 30.7 3.8e-07 1 CL0186
Cotton_A_11839_CDS 386 422 384 422 PF00400.32 WD40 Repeat 3 38 38 26.2 1e-05 1 CL0186
Cotton_A_11839_CDS 428 464 427 468 PF00400.32 WD40 Repeat 2 36 38 13.7 0.089 1 CL0186
Cotton_A_11839_CDS 472 510 470 510 PF00400.32 WD40 Repeat 3 38 38 26.8 6.3e-06 1 CL0186
Cotton_A_11839_CDS 515 551 514 552 PF00400.32 WD40 Repeat 2 37 38 36.7 4.7e-09 1 CL0186
Cotton_A_11839_CDS 615 1058 614 1059 PF04053.14 Coatomer_WDAD Family 2 444 445 543.1 5.8e-163 1 CL0186
Cotton_A_03391_CDS 423 461 422 462 PF00514.23 Arm Repeat 2 40 41 25.0 1.3e-05 1 CL0020
Cotton_A_19836_CDS 35 345 35 348 PF00657.22 Lipase_GDSL Family 1 197 200 81.8 6.4e-23 1 CL0264
Cotton_A_10329_CDS 50 100 50 101 PF00847.20 AP2 Domain 1 53 54 46.2 3.9e-12 1 CL0081
Cotton_A_13269_CDS 94 225 94 226 PF03479.15 DUF296 Domain 1 106 107 79.5 2.1e-22 1 CL0615
Cotton_A_01753_CDS 1 96 1 103 PF00854.21 PTR2 Family 286 380 395 34.1 1.3e-08 1 CL0015
Cotton_A_08287_CDS 50 75 49 75 PF00642.24 zf-CCCH Family 2 27 27 33.6 2.5e-08 1 CL0537
Cotton_A_08287_CDS 95 120 94 120 PF00642.24 zf-CCCH Family 2 27 27 39.2 4.5e-10 1 CL0537
Cotton_A_08287_CDS 141 166 140 166 PF00642.24 zf-CCCH Family 2 27 27 26.1 5.6e-06 1 CL0537
Cotton_A_08287_CDS 295 320 294 320 PF00642.24 zf-CCCH Family 2 27 27 36.2 3.9e-09 1 CL0537
Cotton_A_08287_CDS 343 366 340 366 PF00642.24 zf-CCCH Family 4 27 27 33.4 2.9e-08 1 CL0537
Cotton_A_10533_CDS 125 153 123 153 PF01535.20 PPR Family 3 31 31 11.4 0.32 1 CL0020
Cotton_A_10533_CDS 158 203 155 204 PF13041.6 PPR_2 Repeat 4 49 50 34.0 2.5e-08 1 CL0020
Cotton_A_10533_CDS 225 274 225 274 PF13041.6 PPR_2 Repeat 1 50 50 65.3 4.1e-18 1 CL0020
Cotton_A_10533_CDS 300 327 298 328 PF01535.20 PPR Family 3 30 31 21.1 0.00025 1 CL0020
Cotton_A_10533_CDS 331 379 330 379 PF13041.6 PPR_2 Repeat 2 50 50 65.0 5.2e-18 1 CL0020
Cotton_A_10533_CDS 404 433 403 433 PF01535.20 PPR Family 2 31 31 14.5 0.031 1 CL0020
Cotton_A_37744_CDS 39 183 38 184 PF03018.14 Dirigent Family 2 147 148 132.0 1.4e-38 1 CL0650
Cotton_A_20952_CDS 145 259 145 260 PF03479.15 DUF296 Domain 1 105 107 95.7 2e-27 1 CL0615
Cotton_A_30448_CDS 49 433 49 433 PF12056.8 DUF3537 Family 1 390 390 468.0 2e-140 1 No_clan
Cotton_A_20348_CDS 36 106 36 107 PF00240.23 ubiquitin Domain 1 71 72 55.0 5.2e-15 1 CL0072
Cotton_A_20348_CDS 112 184 112 185 PF00240.23 ubiquitin Domain 1 71 72 32.9 3.9e-08 1 CL0072
Cotton_A_20348_CDS 277 528 277 529 PF00454.27 PI3_PI4_kinase Family 1 249 250 172.5 1.4e-50 1 CL0016
Cotton_A_20514_CDS 57 299 57 340 PF00295.17 Glyco_hydro_28 Domain 1 241 325 202.4 9.2e-60 1 CL0268
Cotton_A_40988_CDS 105 393 104 393 PF03151.16 TPT Family 2 290 290 378.3 2.5e-113 1 CL0184
Cotton_A_11469_CDS 49 84 47 85 PF02845.16 CUE Family 6 41 42 26.4 3.9e-06 1 CL0214
Cotton_A_33064_CDS 30 69 28 74 PF00646.33 F-box Domain 3 42 48 28.7 8.4e-07 1 CL0271
Cotton_A_33064_CDS 230 357 228 380 PF07734.13 FBA_1 Family 3 125 164 36.8 3.5e-09 1 CL0162
Cotton_A_26112_CDS 36 96 18 99 PF15511.6 CENP-T_C Domain 19 79 108 34.4 1.8e-08 1 CL0012
Cotton_A_18789_CDS 22 86 21 86 PF00808.23 CBFD_NFYB_HMF Domain 2 65 65 98.0 2.8e-28 1 CL0012
Cotton_A_26795_CDS 36 86 35 86 PF08100.11 Dimerisation Domain 2 51 51 60.3 1.3e-16 1 CL0123
Cotton_A_26795_CDS 143 294 143 294 PF00891.18 Methyltransf_2 Domain 1 160 210 170.9 2.2e-50 1 CL0063
Cotton_A_38035_CDS 51 204 50 205 PF04535.12 DUF588 Domain 3 149 150 125.1 1.9e-36 1 CL0396
Cotton_A_29836_CDS 110 329 108 355 PF00069.25 Pkinase Domain 3 197 264 141.2 3.9e-41 1 CL0016
Cotton_A_29836_CDS 519 792 514 792 PF07714.17 Pkinase_Tyr Domain 7 259 259 97.0 1.1e-27 1 CL0016
Cotton_A_25315_CDS 89 278 83 280 PF00067.22 p450 Domain 28 228 463 72.7 2.4e-20 1 No_clan
Cotton_A_18274_CDS 37 59 8 59 PF03765.15 CRAL_TRIO_N Domain 32 54 54 32.3 8.2e-08 1 CL0214
Cotton_A_18274_CDS 88 241 85 242 PF00650.20 CRAL_TRIO Domain 5 155 159 69.2 3.2e-19 1 CL0512
Cotton_A_01036_CDS 126 176 108 176 PF08241.12 Methyltransf_11 Domain 47 96 96 28.0 2.5e-06 1 CL0063
Cotton_A_01036_CDS 291 453 291 480 PF05050.12 Methyltransf_21 Family 1 154 173 35.3 1.1e-08 1 CL0063
Cotton_A_20893_CDS 3 435 2 435 PF02458.15 Transferase Family 2 434 434 265.3 8.1e-79 1 CL0149
Cotton_A_39600_CDS 9 85 1 88 PF00248.21 Aldo_ket_red Domain 115 173 294 44.2 1.3e-11 1 No_clan
Cotton_A_39600_CDS 85 131 84 132 PF00248.21 Aldo_ket_red Domain 245 293 294 23.4 2.9e-05 1 No_clan
Cotton_A_17879_CDS 52 105 52 105 PF14416.6 PMR5N Domain 1 53 53 76.5 1.4e-21 1 No_clan
Cotton_A_17879_CDS 106 394 106 396 PF13839.6 PC-Esterase Family 1 281 283 292.4 4.4e-87 1 CL0264
Cotton_A_03345_CDS 4 52 1 64 PF00297.22 Ribosomal_L3 Family 21 69 369 41.6 7.6e-11 1 CL0575
Cotton_A_11191_CDS 58 111 56 112 PF00046.29 Homeodomain Domain 3 56 57 59.6 2e-16 1 CL0123
Cotton_A_11191_CDS 113 153 113 155 PF02183.18 HALZ Coiled-coil 1 41 43 57.1 1.5e-15 1 No_clan
Cotton_A_06705_CDS 424 608 422 608 PF11721.8 Malectin Domain 3 165 165 151.7 1.8e-44 1 CL0202
Cotton_A_06705_CDS 694 956 690 957 PF07714.17 Pkinase_Tyr Domain 5 258 259 156.3 8.6e-46 1 CL0016
Cotton_A_08926_CDS 65 162 65 167 PF01453.24 B_lectin Domain 1 98 105 89.8 1.5e-25 1 No_clan
Cotton_A_08926_CDS 149 232 126 233 PF00954.20 S_locus_glycop Domain 24 110 111 73.7 1.6e-20 1 No_clan
Cotton_A_24388_CDS 8 77 3 104 PF03311.14 Cornichon Family 5 73 122 44.9 1.3e-11 1 No_clan
Cotton_A_19630_CDS 90 244 90 244 PF04715.13 Anth_synt_I_N Family 1 142 142 98.9 2.8e-28 1 No_clan
Cotton_A_19630_CDS 305 576 304 576 PF00425.18 Chorismate_bind Family 2 258 258 281.6 6.3e-84 1 No_clan
Cotton_A_00226_CDS 22 136 21 137 PF01426.18 BAH Domain 2 121 122 82.6 2e-23 1 No_clan
Cotton_A_00226_CDS 141 189 141 190 PF00628.29 PHD Domain 1 51 52 38.8 6.4e-10 1 CL0390
Cotton_A_15134_CDS 42 155 39 160 PF00069.25 Pkinase Domain 4 117 264 63.7 1.7e-17 1 CL0016
Cotton_A_09273_CDS 51 195 20 197 PF01612.20 DNA_pol_A_exo1 Domain 29 171 176 26.5 4.6e-06 1 CL0219
Cotton_A_35644_CDS 8 168 8 169 PF00071.22 Ras Domain 1 161 162 207.8 7.3e-62 1 CL0023
Cotton_A_23365_CDS 54 161 53 162 PF05916.11 Sld5 Family 2 108 109 75.8 3.2e-21 1 No_clan
Cotton_A_03265_CDS 359 401 359 402 PF06203.14 CCT Motif 1 43 44 59.0 3.3e-16 1 CL0281
Cotton_A_12942_CDS 27 100 25 103 PF09279.11 EF-hand_like Domain 10 80 86 27.5 3.2e-06 1 CL0220
Cotton_A_12942_CDS 113 256 113 257 PF00388.19 PI-PLC-X Family 1 144 145 162.9 3.5e-48 1 CL0384
Cotton_A_12942_CDS 354 443 337 443 PF00387.19 PI-PLC-Y Family 25 115 115 100.0 1e-28 1 CL0384
Cotton_A_12942_CDS 466 564 464 573 PF00168.30 C2 Domain 3 93 103 44.1 2e-11 1 CL0154
Cotton_A_27243_CDS 74 138 61 138 PF13771.6 zf-HC5HC2H Domain 22 90 90 37.8 1.7e-09 1 CL0390
Cotton_A_27243_CDS 189 243 177 245 PF00004.29 AAA Domain 76 130 132 40.9 2.4e-10 1 CL0023
Cotton_A_33829_CDS 192 256 189 257 PF04564.15 U-box Domain 12 72 73 40.9 1.7e-10 1 CL0229
Cotton_A_33829_CDS 831 868 830 870 PF00514.23 Arm Repeat 2 39 41 21.6 0.00016 1 CL0020
Cotton_A_31860_CDS 28 133 28 137 PF00411.19 Ribosomal_S11 Family 1 106 110 152.5 4.8e-45 1 CL0267
Cotton_A_31860_CDS 161 351 161 352 PF01193.24 RNA_pol_L Domain 1 68 69 49.6 1.9e-13 1 CL0509
Cotton_A_31860_CDS 192 283 188 291 PF01000.26 RNA_pol_A_bac Domain 11 106 112 50.0 3.2e-13 1 No_clan
Cotton_A_31860_CDS 388 451 386 452 PF03118.15 RNA_pol_A_CTD Domain 3 66 67 46.3 2.7e-12 1 CL0198
Cotton_A_07784_CDS 2 408 1 418 PF00067.22 p450 Domain 38 445 463 306.0 4.3e-91 1 No_clan
Cotton_A_40961_CDS 57 80 56 81 PF05678.14 VQ Motif 2 25 28 41.9 5e-11 1 No_clan
Cotton_A_32872_CDS 4 99 1 103 PF00004.29 AAA Domain 38 123 132 64.4 1.3e-17 1 CL0023
Cotton_A_28009_CDS 1 106 1 119 PF00149.28 Metallophos Domain 1 102 204 25.5 1.6e-05 1 CL0163
Cotton_A_28009_CDS 163 181 162 193 PF05011.13 DBR1 Domain 2 20 139 27.1 4.6e-06 1 No_clan
Cotton_A_01553_CDS 100 170 99 179 PF01189.17 Methyltr_RsmB-F Family 2 71 200 33.8 2.4e-08 1 CL0063
Cotton_A_01553_CDS 252 385 237 386 PF01189.17 Methyltr_RsmB-F Family 75 199 200 68.7 5.2e-19 1 CL0063
Cotton_A_19231_CDS 25 763 22 764 PF05691.12 Raffinose_syn Family 5 749 750 1125.4 0 1 CL0058
Cotton_A_03534_CDS 97 372 93 372 PF07714.17 Pkinase_Tyr Domain 5 259 259 169.4 8.8e-50 1 CL0016
Cotton_A_11950_CDS 133 534 130 543 PF00854.21 PTR2 Family 14 388 395 188.1 2.1e-55 1 CL0015
Cotton_A_36910_CDS 95 142 95 143 PF13041.6 PPR_2 Repeat 1 48 50 38.8 7.7e-10 1 CL0020
Cotton_A_36910_CDS 168 192 165 194 PF01535.20 PPR Family 5 29 31 12.5 0.14 1 CL0020
Cotton_A_36910_CDS 223 270 223 272 PF13041.6 PPR_2 Repeat 1 48 50 41.1 1.5e-10 1 CL0020
Cotton_A_36910_CDS 299 323 297 326 PF01535.20 PPR Family 4 28 31 15.4 0.016 1 CL0020
Cotton_A_36910_CDS 324 371 324 373 PF13041.6 PPR_2 Repeat 1 48 50 38.9 7.3e-10 1 CL0020
Cotton_A_36910_CDS 399 424 398 426 PF01535.20 PPR Family 2 27 31 19.6 0.00072 1 CL0020
Cotton_A_36910_CDS 498 621 498 622 PF14432.6 DYW_deaminase Family 1 126 127 139.6 4.8e-41 1 CL0109
Cotton_A_18632_CDS 217 484 216 485 PF00664.23 ABC_membrane Family 2 273 274 90.8 1.1e-25 1 CL0241
Cotton_A_18632_CDS 557 687 554 688 PF00005.27 ABC_tran Domain 6 136 137 64.4 1.4e-17 1 CL0023
Cotton_A_18632_CDS 852 1076 834 1092 PF00664.23 ABC_membrane Family 23 249 274 98.3 5.8e-28 1 CL0241
Cotton_A_18632_CDS 1166 1314 1166 1314 PF00005.27 ABC_tran Domain 1 137 137 106.2 1.9e-30 1 CL0023
Cotton_A_26539_CDS 30 136 29 136 PF13947.6 GUB_WAK_bind Domain 2 106 106 96.4 1.6e-27 1 No_clan
Cotton_A_26539_CDS 169 265 167 281 PF08488.11 WAK Family 3 92 103 21.7 0.00022 1 No_clan
Cotton_A_10171_CDS 15 50 15 56 PF00890.24 FAD_binding_2 Family 1 36 417 28.3 9.3e-07 1 CL0063
Cotton_A_05344_CDS 30 80 27 80 PF04578.13 DUF594 Family 5 55 55 66.9 8.3e-19 1 No_clan
Cotton_A_00475_CDS 70 96 70 96 PF12171.8 zf-C2H2_jaz Family 1 27 27 37.5 2e-09 1 CL0361
Cotton_A_12962_CDS 100 152 97 153 PF01486.17 K-box Family 10 62 93 57.3 1.4e-15 1 No_clan
Cotton_A_23206_CDS 137 373 137 374 PF01896.19 DNA_primase_S Family 1 176 177 194.8 1.2e-57 1 CL0243
Cotton_A_35108_CDS 20 56 20 56 PF01394.20 Clathrin_propel Repeat 1 37 37 29.5 6.1e-07 1 CL0020
Cotton_A_22343_CDS 59 144 59 144 PF04640.14 PLATZ Family 1 82 82 77.2 1.1e-21 1 No_clan
Cotton_A_06212_CDS 61 476 61 478 PF02897.15 Peptidase_S9_N Domain 1 412 414 169.2 1.3e-49 1 CL0186
Cotton_A_06212_CDS 599 802 574 804 PF00326.21 Peptidase_S9 Domain 17 210 212 136.6 7.6e-40 1 CL0028
Cotton_A_25152_CDS 24 74 23 75 PF03619.16 Solute_trans_a Family 2 52 265 59.5 3.5e-16 1 No_clan
Cotton_A_12943_CDS 108 250 108 251 PF00388.19 PI-PLC-X Family 1 144 145 164.1 1.4e-48 1 CL0384
Cotton_A_12943_CDS 321 407 297 407 PF00387.19 PI-PLC-Y Family 28 115 115 99.2 1.8e-28 1 CL0384
Cotton_A_12943_CDS 430 530 428 539 PF00168.30 C2 Domain 3 93 103 42.1 8e-11 1 CL0154
Cotton_A_14438_CDS 67 114 65 115 PF00847.20 AP2 Domain 3 53 54 42.4 6.1e-11 1 CL0081
Cotton_A_06307_CDS 36 491 36 498 PF00067.22 p450 Domain 1 456 463 342.8 3e-102 1 No_clan
Cotton_A_19567_CDS 2866 2916 2849 2917 PF14844.6 PH_BEACH Domain 48 99 100 34.3 1.9e-08 1 CL0266
Cotton_A_19567_CDS 2955 3234 2955 3234 PF02138.18 Beach Family 1 276 276 402.0 1.2e-120 1 No_clan
Cotton_A_19567_CDS 3364 3398 3361 3398 PF00400.32 WD40 Repeat 5 38 38 21.5 0.00032 1 CL0186
Cotton_A_39971_CDS 27 480 26 485 PF00083.24 Sugar_tr Family 2 447 452 399.6 1.8e-119 1 CL0015
Cotton_A_26555_CDS 1 61 1 62 PF00013.29 KH_1 Domain 4 65 66 42.8 3.5e-11 1 CL0007
Cotton_A_23072_CDS 7 35 7 36 PF01535.20 PPR Family 1 29 31 26.4 4.9e-06 1 CL0020
Cotton_A_23072_CDS 39 67 38 68 PF01535.20 PPR Family 2 29 31 17.9 0.0026 1 CL0020
Cotton_A_23072_CDS 70 93 70 94 PF01535.20 PPR Family 1 24 31 18.8 0.0013 1 CL0020
Cotton_A_23072_CDS 129 160 127 160 PF12854.7 PPR_1 Repeat 3 34 34 38.0 9.9e-10 1 CL0020
Cotton_A_23072_CDS 162 210 162 212 PF13041.6 PPR_2 Repeat 1 48 50 36.7 3.5e-09 1 CL0020
Cotton_A_23072_CDS 239 265 239 266 PF01535.20 PPR Family 4 30 31 13.2 0.08 1 CL0020
Cotton_A_23072_CDS 267 296 267 297 PF01535.20 PPR Family 1 30 31 30.7 2.1e-07 1 CL0020
Cotton_A_23072_CDS 326 372 326 375 PF13041.6 PPR_2 Repeat 1 47 50 44.5 1.3e-11 1 CL0020
Cotton_A_23072_CDS 402 426 402 429 PF01535.20 PPR Family 4 28 31 12.8 0.11 1 CL0020
Cotton_A_23072_CDS 427 474 427 476 PF13041.6 PPR_2 Repeat 1 48 50 49.8 2.9e-13 1 CL0020
Cotton_A_23072_CDS 502 526 501 529 PF01535.20 PPR Family 2 26 31 16.1 0.0096 1 CL0020
Cotton_A_40912_CDS 33 106 32 106 PF00631.22 G-gamma Domain 2 68 68 62.6 2.6e-17 1 No_clan
Cotton_A_00384_CDS 6 164 6 170 PF14215.6 bHLH-MYC_N Family 1 169 175 91.5 7.5e-26 1 CL0161
Cotton_A_05856_CDS 16 63 16 63 PF00249.31 Myb_DNA-binding Domain 1 46 46 49.2 4.2e-13 1 CL0123
Cotton_A_05856_CDS 82 106 69 106 PF00249.31 Myb_DNA-binding Domain 22 46 46 25.4 1.2e-05 1 CL0123
Cotton_A_08001_CDS 97 225 97 225 PF01743.20 PolyA_pol Domain 1 126 126 80.4 1.5e-22 1 CL0260
Cotton_A_08001_CDS 252 313 252 315 PF12627.7 PolyA_pol_RNAbd Domain 1 62 64 48.7 4.7e-13 1 No_clan
Cotton_A_12500_CDS 36 123 36 128 PF01190.17 Pollen_Ole_e_I Family 1 92 99 66.2 2.6e-18 1 CL0287
Cotton_A_07767_CDS 10 45 10 65 PF00249.31 Myb_DNA-binding Domain 1 35 46 36.6 3.9e-09 1 CL0123
Cotton_A_07767_CDS 314 392 310 394 PF00439.25 Bromodomain Domain 5 82 84 40.0 3e-10 1 No_clan
Cotton_A_38615_CDS 51 159 51 161 PF02771.16 Acyl-CoA_dh_N Domain 1 111 113 91.1 7.1e-26 1 CL0544
Cotton_A_38615_CDS 165 257 165 257 PF02770.19 Acyl-CoA_dh_M Domain 1 97 97 74.3 6.5e-21 1 No_clan
Cotton_A_38615_CDS 275 414 271 417 PF00441.24 Acyl-CoA_dh_1 Domain 8 147 150 83.6 1.5e-23 1 CL0087
Cotton_A_00871_CDS 40 151 39 154 PF01118.24 Semialdhyde_dh Domain 2 118 121 108.2 3.3e-31 1 CL0063
Cotton_A_00871_CDS 180 360 179 360 PF02774.18 Semialdhyde_dhC Domain 3 184 184 156.3 8.5e-46 1 CL0139
Cotton_A_12137_CDS 27 344 27 346 PF00332.18 Glyco_hydro_17 Domain 1 311 313 313.5 1.9e-93 1 CL0058
Cotton_A_12137_CDS 380 451 380 452 PF07983.13 X8 Domain 1 75 76 84.7 5.4e-24 1 No_clan
Cotton_A_06055_CDS 73 117 73 117 PF12023.8 DUF3511 Family 1 45 45 86.5 7.4e-25 1 No_clan
Cotton_A_22843_CDS 125 195 124 199 PF03004.14 Transposase_24 Family 52 128 142 33.2 4.9e-08 1 No_clan
Cotton_A_18785_CDS 52 159 52 160 PF14226.6 DIOX_N Family 1 117 118 104.1 7.3e-30 1 CL0029
Cotton_A_18785_CDS 206 305 204 305 PF03171.20 2OG-FeII_Oxy Domain 3 101 101 85.1 3.7e-24 1 CL0029
Cotton_A_22987_CDS 17 109 8 109 PF14368.6 LTP_2 Family 9 97 97 23.1 5.8e-05 1 CL0482
Cotton_A_39835_CDS 13 376 13 376 PF04185.14 Phosphoesterase Family 1 356 356 366.1 2e-109 1 CL0088
Cotton_A_40065_CDS 21 61 21 61 PF02533.15 PsbK Family 1 41 41 74.7 4.5e-21 1 No_clan
Cotton_A_40292_CDS 111 150 111 151 PF00514.23 Arm Repeat 1 40 41 20.9 0.00026 1 CL0020
Cotton_A_26800_CDS 18 157 1 157 PF01081.19 Aldolase Domain 54 196 196 86.2 1.9e-24 1 CL0036
Cotton_A_04740_CDS 95 278 92 279 PF09756.9 DDRGK Family 5 187 188 177.2 2.5e-52 1 CL0123
Cotton_A_04970_CDS 126 292 118 295 PF00587.25 tRNA-synt_2b Domain 11 176 179 63.9 1.8e-17 1 CL0040
Cotton_A_04970_CDS 311 406 311 408 PF03129.20 HGTP_anticodon Domain 1 92 94 65.4 4e-18 1 CL0458
Cotton_A_04970_CDS 434 507 434 507 PF09180.11 ProRS-C_1 Domain 1 69 69 96.9 5.9e-28 1 No_clan
Cotton_A_04230_CDS 31 168 28 168 PF00903.25 Glyoxalase Domain 4 128 128 63.1 2.7e-17 1 CL0104
Cotton_A_08822_CDS 102 279 102 280 PF00719.19 Pyrophosphatase Domain 1 159 160 157.5 2.3e-46 1 No_clan
Cotton_A_00753_CDS 271 397 259 446 PF07714.17 Pkinase_Tyr Domain 14 147 259 32.0 7.4e-08 1 CL0016
Cotton_A_31432_CDS 73 157 73 167 PF01453.24 B_lectin Domain 1 90 105 65.3 6.1e-18 1 No_clan
Cotton_A_31432_CDS 242 309 198 311 PF00954.20 S_locus_glycop Domain 43 108 111 44.0 2.6e-11 1 No_clan
Cotton_A_31432_CDS 493 751 490 754 PF00069.25 Pkinase Domain 5 258 264 177.6 3e-52 1 CL0016
Cotton_A_25964_CDS 56 197 54 204 PF00106.25 adh_short Domain 5 141 195 79.1 2.9e-22 1 CL0063
Cotton_A_31124_CDS 26 47 23 47 PF05182.13 Fip1 Motif 22 43 43 31.0 1.3e-07 1 No_clan
Cotton_A_23666_CDS 42 285 37 287 PF00141.23 peroxidase Domain 2 226 229 253.3 2.1e-75 1 CL0617
Cotton_A_09405_CDS 32 71 31 72 PF08263.12 LRRNT_2 Family 2 40 41 21.1 0.00029 1 No_clan
Cotton_A_09405_CDS 75 133 74 134 PF13855.6 LRR_8 Repeat 2 60 61 28.3 1.1e-06 1 CL0022
Cotton_A_09405_CDS 292 314 292 337 PF00560.33 LRR_1 Repeat 1 23 23 10.2 0.97 1 CL0022
Cotton_A_09405_CDS 694 962 692 964 PF00069.25 Pkinase Domain 4 260 264 159.3 1.1e-46 1 CL0016
Cotton_A_19737_CDS 171 322 155 372 PF00145.17 DNA_methylase Domain 38 173 335 73.3 2.1e-20 1 CL0063
Cotton_A_19737_CDS 396 459 379 461 PF00145.17 DNA_methylase Domain 269 332 335 40.2 2.6e-10 1 CL0063
Cotton_A_24242_CDS 47 152 47 152 PF05938.11 Self-incomp_S1 Family 1 104 104 97.6 5.1e-28 1 No_clan
Cotton_A_10895_CDS 24 297 11 298 PF03151.16 TPT Family 13 289 290 58.4 7e-16 1 CL0184
Cotton_A_19263_CDS 612 865 611 917 PF08314.11 Sec39 Family 4 251 750 55.7 3.2e-15 1 No_clan
Cotton_A_19263_CDS 963 1235 929 1243 PF08314.11 Sec39 Family 405 732 750 64.7 6e-18 1 No_clan
Cotton_A_27094_CDS 220 248 219 248 PF01535.20 PPR Family 3 31 31 36.0 4.3e-09 1 CL0020
Cotton_A_27094_CDS 277 326 277 326 PF13041.6 PPR_2 Repeat 1 50 50 38.3 1.1e-09 1 CL0020
Cotton_A_27094_CDS 354 380 351 380 PF01535.20 PPR Family 5 31 31 12.8 0.11 1 CL0020
Cotton_A_27094_CDS 403 461 401 464 PF13812.6 PPR_3 Repeat 3 60 63 17.8 0.0026 1 CL0020
Cotton_A_27094_CDS 552 676 552 676 PF14432.6 DYW_deaminase Family 1 127 127 137.8 1.7e-40 1 CL0109
Cotton_A_09467_CDS 64 176 64 177 PF03479.15 DUF296 Domain 1 106 107 96.8 9.1e-28 1 CL0615
Cotton_A_38351_CDS 61 237 61 238 PF01397.21 Terpene_synth Domain 1 191 192 173.8 3.2e-51 1 No_clan
Cotton_A_38351_CDS 269 532 269 533 PF03936.16 Terpene_synth_C Domain 1 266 267 332.8 1.4e-99 1 CL0613
Cotton_A_07252_CDS 28 300 28 300 PF04086.13 SRP-alpha_N Family 1 291 291 231.6 1.8e-68 1 No_clan
Cotton_A_07252_CDS 317 384 314 390 PF02881.19 SRP54_N Domain 5 73 75 29.4 7.1e-07 1 No_clan
Cotton_A_07252_CDS 416 620 415 621 PF00448.22 SRP54 Domain 2 195 196 188.3 1.1e-55 1 CL0023
Cotton_A_40131_CDS 221 269 214 276 PF13432.6 TPR_16 Family 10 61 68 16.3 0.012 1 CL0020
Cotton_A_07154_CDS 26 276 26 276 PF02089.15 Palm_thioest Domain 1 242 242 237.3 2.1e-70 1 CL0028
Cotton_A_30609_CDS 134 213 74 214 PF03348.15 Serinc Family 347 428 429 68.0 7.2e-19 1 No_clan
Cotton_A_23243_CDS 49 395 46 397 PF03283.13 PAE Family 5 353 355 544.9 8e-164 1 CL0028
Cotton_A_31319_CDS 325 381 325 382 PF00847.20 AP2 Domain 1 53 54 36.6 4e-09 1 CL0081
Cotton_A_31319_CDS 426 475 424 476 PF00847.20 AP2 Domain 3 53 54 36.7 3.7e-09 1 CL0081
Cotton_A_29179_CDS 49 114 48 115 PF00013.29 KH_1 Domain 2 65 66 52.5 3.1e-14 1 CL0007
Cotton_A_29179_CDS 135 200 134 201 PF00013.29 KH_1 Domain 2 65 66 47.0 1.7e-12 1 CL0007
Cotton_A_29179_CDS 269 334 268 335 PF00013.29 KH_1 Domain 2 65 66 54.3 8.6e-15 1 CL0007
Cotton_A_17810_CDS 32 236 30 237 PF00009.27 GTP_EFTU Domain 3 193 194 88.9 3.1e-25 1 CL0023
Cotton_A_17810_CDS 268 350 268 351 PF03144.25 GTP_EFTU_D2 Domain 1 73 74 39.6 5.3e-10 1 CL0575
Cotton_A_17810_CDS 362 451 361 451 PF09173.11 eIF2_C Domain 2 86 86 123.2 3.9e-36 1 No_clan
Cotton_A_01821_CDS 160 227 159 228 PF00076.22 RRM_1 Domain 2 69 70 36.5 3.2e-09 1 CL0221
Cotton_A_18400_CDS 49 95 49 95 PF17781.1 RPN1_RPN2_N Domain 1 47 309 49.8 3.1e-13 1 No_clan
Cotton_A_12887_CDS 1 38 1 39 PF00139.19 Lectin_legB Domain 210 248 249 31.7 1.1e-07 1 CL0004
Cotton_A_12887_CDS 111 236 109 237 PF07714.17 Pkinase_Tyr Domain 3 130 259 86.4 1.8e-24 1 CL0016
Cotton_A_22913_CDS 68 534 68 550 PF00221.19 Lyase_aromatic Family 1 449 464 510.4 4.1e-153 1 No_clan
Cotton_A_03834_CDS 5 75 5 75 PF15906.5 zf-NOSIP Domain 1 75 75 58.2 6.8e-16 1 CL0229
Cotton_A_17443_CDS 79 181 78 181 PF00970.24 FAD_binding_6 Domain 2 99 99 86.8 1e-24 1 CL0076
Cotton_A_17443_CDS 191 297 191 298 PF00175.21 NAD_binding_1 Domain 1 108 109 105.2 2.6e-30 1 CL0091
Cotton_A_17326_CDS 28 515 28 518 PF00118.24 Cpn60_TCP1 Family 1 488 491 498.5 1.9e-149 1 No_clan
Cotton_A_30743_CDS 6 92 5 92 PF03871.14 RNA_pol_Rpb5_N Domain 2 89 89 98.2 3e-28 1 CL0236
Cotton_A_30743_CDS 136 206 135 207 PF01191.19 RNA_pol_Rpb5_C Domain 2 72 73 106.9 3.4e-31 1 No_clan
Cotton_A_18300_CDS 100 149 98 150 PF02861.20 Clp_N Family 3 52 53 55.3 5.2e-15 1 No_clan
Cotton_A_18300_CDS 175 226 175 226 PF02861.20 Clp_N Family 1 53 53 39.1 6e-10 1 No_clan
Cotton_A_18300_CDS 284 416 283 420 PF00004.29 AAA Domain 2 126 132 48.6 1e-12 1 CL0023
Cotton_A_18300_CDS 423 525 423 526 PF17871.1 AAA_lid_9 Domain 1 103 104 113.6 3.6e-33 1 CL0671
Cotton_A_18300_CDS 681 848 681 849 PF07724.14 AAA_2 Domain 1 170 171 180.8 2.3e-53 1 CL0023
Cotton_A_18300_CDS 855 934 855 935 PF10431.9 ClpB_D2-small Domain 1 80 81 90.3 6e-26 1 CL0671
Cotton_A_24665_CDS 50 144 50 147 PF00011.21 HSP20 Family 1 92 102 99.2 1.2e-28 1 CL0190
Cotton_A_14905_CDS 16 246 7 246 PF00481.21 PP2C Family 11 258 258 199.3 8.4e-59 1 CL0238
Cotton_A_34420_CDS 36 426 32 431 PF00999.21 Na_H_Exchanger Family 3 375 381 215.7 8.3e-64 1 CL0064
Cotton_A_34435_CDS 110 176 110 198 PF01583.20 APS_kinase Domain 1 67 158 85.2 4.2e-24 1 CL0023
Cotton_A_34435_CDS 205 296 191 300 PF01583.20 APS_kinase Domain 62 154 158 127.3 4.9e-37 1 CL0023
Cotton_A_03776_CDS 46 120 41 125 PF12643.7 MazG-like Domain 6 78 85 29.4 7.1e-07 1 CL0231
Cotton_A_04373_CDS 14 175 14 175 PF17144.4 Ribosomal_L5e Family 1 163 163 263.1 9.4e-79 1 CL0267
Cotton_A_04373_CDS 191 280 191 283 PF14204.6 Ribosomal_L18_c Domain 1 92 95 120.1 5.8e-35 1 No_clan
Cotton_A_12441_CDS 38 121 38 121 PF02298.17 Cu_bind_like Domain 1 84 84 103.9 3.5e-30 1 CL0026
Cotton_A_29497_CDS 107 896 107 896 PF00343.20 Phosphorylase Family 1 711 711 979.0 1.3e-294 1 CL0113
Cotton_A_26287_CDS 128 147 128 150 PF00096.26 zf-C2H2 Domain 1 20 23 16.2 0.011 1 CL0361
Cotton_A_13941_CDS 39 127 39 127 PF09133.10 SANTA Domain 1 90 90 88.3 3.6e-25 1 No_clan
Cotton_A_15911_CDS 2 286 1 288 PF08392.12 FAE1_CUT1_RppA Family 5 288 290 385.4 1.6e-115 1 CL0046
Cotton_A_15911_CDS 301 383 297 384 PF08541.10 ACP_syn_III_C Domain 10 89 90 39.7 4.1e-10 1 CL0046
Cotton_A_22418_CDS 3 68 2 68 PF00035.26 dsrm Domain 2 67 67 49.0 7.4e-13 1 CL0196
Cotton_A_22418_CDS 88 153 88 153 PF00035.26 dsrm Domain 1 67 67 47.8 1.8e-12 1 CL0196
Cotton_A_03995_CDS 30 54 30 54 PF00096.26 zf-C2H2 Domain 1 23 23 18.4 0.0021 1 CL0361
Cotton_A_03995_CDS 59 84 59 84 PF00096.26 zf-C2H2 Domain 1 23 23 16.4 0.0091 1 CL0361
Cotton_A_03995_CDS 99 123 99 123 PF00096.26 zf-C2H2 Domain 1 23 23 17.7 0.0035 1 CL0361
Cotton_A_03995_CDS 198 222 197 222 PF00096.26 zf-C2H2 Domain 2 23 23 17.2 0.005 1 CL0361
Cotton_A_40188_CDS 102 172 78 172 PF02225.22 PA Family 21 89 89 35.0 1.1e-08 1 CL0364
Cotton_A_40188_CDS 245 524 242 526 PF04258.13 Peptidase_A22B Family 4 282 284 277.5 1.4e-82 1 CL0130
Cotton_A_17792_CDS 55 177 55 177 PF02996.17 Prefoldin Coiled-coil 1 120 120 106.9 5.7e-31 1 CL0200
Cotton_A_18849_CDS 416 674 386 677 PF09787.9 Golgin_A5 Family 41 297 306 70.9 1.2e-19 1 No_clan
Cotton_A_19334_CDS 11 51 10 55 PF00319.18 SRF-TF Domain 2 42 48 55.2 3.5e-15 1 No_clan
Cotton_A_40425_CDS 10 72 3 89 PF05021.15 NPL4 Family 220 285 308 23.6 2.9e-05 1 CL0366
Cotton_A_21215_CDS 126 169 125 169 PF13639.6 zf-RING_2 Domain 2 44 44 48.3 9.3e-13 1 CL0229
Cotton_A_36202_CDS 49 419 45 427 PF03140.15 DUF247 Family 17 389 397 251.7 1.4e-74 1 No_clan
Cotton_A_05635_CDS 160 190 160 190 PF01535.20 PPR Family 1 31 31 11.0 0.42 1 CL0020
Cotton_A_05635_CDS 191 222 191 222 PF12854.7 PPR_1 Repeat 3 34 34 40.5 1.6e-10 1 CL0020
Cotton_A_05635_CDS 223 252 223 253 PF12854.7 PPR_1 Repeat 3 32 34 41.5 7.7e-11 1 CL0020
Cotton_A_05635_CDS 261 309 261 309 PF13041.6 PPR_2 Repeat 1 49 50 62.9 2.4e-17 1 CL0020
Cotton_A_05635_CDS 371 399 370 399 PF01535.20 PPR Family 3 31 31 15.4 0.016 1 CL0020
Cotton_A_05635_CDS 402 449 401 450 PF13041.6 PPR_2 Repeat 2 49 50 34.3 2e-08 1 CL0020
Cotton_A_05635_CDS 461 500 460 504 PF13812.6 PPR_3 Repeat 2 41 63 24.5 2.1e-05 1 CL0020
Cotton_A_05635_CDS 511 535 510 537 PF01535.20 PPR Family 2 26 31 11.4 0.31 1 CL0020
Cotton_A_33142_CDS 10 255 1 256 PF03151.16 TPT Family 45 289 290 126.2 1.6e-36 1 CL0184
Cotton_A_03901_CDS 669 815 668 818 PF00179.26 UQ_con Domain 2 136 140 87.9 4.6e-25 1 CL0208
Cotton_A_23002_CDS 142 424 140 424 PF00069.25 Pkinase Domain 3 264 264 218.6 9.1e-65 1 CL0016
Cotton_A_04040_CDS 5 65 2 65 PF00252.18 Ribosomal_L16 Family 77 132 132 58.1 8.8e-16 1 No_clan
Cotton_A_24140_CDS 349 662 349 663 PF01501.20 Glyco_transf_8 Family 1 255 256 319.7 1.4e-95 1 CL0110
Cotton_A_04405_CDS 15 328 13 334 PF03514.14 GRAS Family 3 331 374 83.6 1.3e-23 1 CL0063
Cotton_A_26324_CDS 19 177 11 199 PF01425.21 Amidase Family 40 196 451 171.6 2.8e-50 1 No_clan
Cotton_A_32036_CDS 6 183 4 183 PF04525.12 LOR Domain 3 187 187 188.2 1.1e-55 1 CL0395
Cotton_A_36232_CDS 17 123 1 126 PF03004.14 Transposase_24 Family 26 139 142 64.6 1e-17 1 No_clan
Cotton_A_07431_CDS 4 118 1 119 PF00179.26 UQ_con Domain 23 139 140 162.4 4.6e-48 1 CL0208
Cotton_A_15629_CDS 59 177 57 184 PF00445.18 Ribonuclease_T2 Domain 3 116 182 73.6 2.3e-20 1 No_clan
Cotton_A_02211_CDS 7 66 5 66 PF00046.29 Homeodomain Domain 3 57 57 65.0 4e-18 1 CL0123
Cotton_A_32507_CDS 233 396 228 413 PF00326.21 Peptidase_S9 Domain 44 189 212 30.1 3.1e-07 1 CL0028
Cotton_A_10837_CDS 32 212 30 212 PF00722.21 Glyco_hydro_16 Domain 3 177 177 192.5 4.2e-57 1 CL0004
Cotton_A_10837_CDS 238 285 237 285 PF06955.12 XET_C Family 2 47 47 67.5 6.4e-19 1 CL0004
Cotton_A_18969_CDS 273 311 273 311 PF03470.14 zf-XS Domain 1 43 43 26.3 6.7e-06 1 No_clan
Cotton_A_18969_CDS 345 459 345 460 PF03468.14 XS Domain 1 112 113 107.9 3.2e-31 1 CL0221
Cotton_A_13698_CDS 6 26 1 26 PF08263.12 LRRNT_2 Family 19 41 41 19.4 0.00097 1 No_clan
Cotton_A_13698_CDS 195 256 194 256 PF13855.6 LRR_8 Repeat 2 61 61 27.4 2.1e-06 1 CL0022
Cotton_A_13698_CDS 472 530 472 530 PF13855.6 LRR_8 Repeat 3 61 61 40.8 1.4e-10 1 CL0022
Cotton_A_13698_CDS 540 557 540 558 PF13516.6 LRR_6 Repeat 1 18 24 11.8 0.2 1 CL0022
Cotton_A_13698_CDS 592 606 589 607 PF13516.6 LRR_6 Repeat 4 18 24 9.4 1.2 1 CL0022
Cotton_A_04745_CDS 147 189 145 189 PF08387.10 FBD Family 4 46 46 39.4 4e-10 1 No_clan
Cotton_A_29266_CDS 20 84 20 84 PF02319.20 E2F_TDP Domain 1 71 71 71.7 3.7e-20 1 CL0123
Cotton_A_29266_CDS 147 225 146 225 PF02319.20 E2F_TDP Domain 2 71 71 63.4 1.5e-17 1 CL0123
Cotton_A_22697_CDS 31 174 28 175 PF04535.12 DUF588 Domain 4 149 150 116.9 6.3e-34 1 CL0396
Cotton_A_17193_CDS 179 994 179 994 PF04931.13 DNA_pol_phi Family 1 767 767 686.8 3.5e-206 1 No_clan
Cotton_A_04466_CDS 1 42 1 42 PF13041.6 PPR_2 Repeat 9 50 50 32.5 7.1e-08 1 CL0020
Cotton_A_04466_CDS 65 92 63 93 PF01535.20 PPR Family 3 30 31 21.8 0.00014 1 CL0020
Cotton_A_04466_CDS 94 120 94 121 PF01535.20 PPR Family 1 30 31 14.3 0.037 1 CL0020
Cotton_A_36373_CDS 23 342 23 344 PF00332.18 Glyco_hydro_17 Domain 1 311 313 270.3 2.6e-80 1 CL0058
Cotton_A_36373_CDS 360 431 359 431 PF07983.13 X8 Domain 2 76 76 68.9 4.4e-19 1 No_clan
Cotton_A_06638_CDS 73 115 71 115 PF03107.16 C1_2 Domain 3 47 47 39.9 3.9e-10 1 CL0006
Cotton_A_06638_CDS 125 174 123 174 PF03107.16 C1_2 Domain 1 47 47 28.5 1.4e-06 1 CL0006
Cotton_A_06638_CDS 184 231 183 231 PF03107.16 C1_2 Domain 2 47 47 36.9 3.3e-09 1 CL0006
Cotton_A_13271_CDS 88 210 87 212 PF10374.9 EST1 Family 2 134 136 67.4 1.9e-18 1 CL0020
Cotton_A_13271_CDS 224 559 224 560 PF10373.9 EST1_DNA_bind Family 1 281 282 228.4 1.2e-67 1 CL0020
Cotton_A_04106_CDS 1 41 1 41 PF13041.6 PPR_2 Repeat 10 50 50 41.0 1.6e-10 1 CL0020
Cotton_A_02654_CDS 81 113 81 114 PF06200.14 tify Domain 1 33 34 48.4 4.2e-13 1 No_clan
Cotton_A_02654_CDS 183 207 183 207 PF09425.10 CCT_2 Motif 2 26 26 39.9 2.7e-10 1 CL0281
Cotton_A_02684_CDS 9 227 9 254 PF00069.25 Pkinase Domain 1 212 264 95.0 4.6e-27 1 CL0016
Cotton_A_01211_CDS 43 169 38 188 PF00156.27 Pribosyltran Domain 7 127 159 65.2 4.8e-18 1 CL0533
Cotton_A_07136_CDS 28 157 15 158 PF00892.20 EamA Family 16 136 137 31.8 1.4e-07 1 CL0184
Cotton_A_07136_CDS 186 325 185 326 PF00892.20 EamA Family 2 136 137 35.3 1.1e-08 1 CL0184
Cotton_A_16704_CDS 32 52 22 61 PF10839.8 DUF2647 Family 26 46 70 25.7 8.6e-06 1 No_clan
Cotton_A_22135_CDS 1 197 1 197 PF07231.12 Hs1pro-1_N Family 1 185 185 276.0 1.3e-82 1 No_clan
Cotton_A_22135_CDS 200 457 200 458 PF07014.12 Hs1pro-1_C Family 1 259 260 458.0 8.8e-138 1 CL0380
Cotton_A_34850_CDS 72 174 71 175 PF00085.20 Thioredoxin Domain 2 102 103 100.2 5.6e-29 1 CL0172
Cotton_A_34988_CDS 38 184 37 184 PF04043.15 PMEI Domain 2 154 154 73.4 2.4e-20 1 No_clan
Cotton_A_34988_CDS 229 522 227 523 PF01095.19 Pectinesterase Family 3 297 298 452.5 4.3e-136 1 CL0268
Cotton_A_39500_CDS 19 104 11 108 PF03371.15 PRP38 Family 9 95 174 88.8 3.7e-25 1 No_clan
Cotton_A_16322_CDS 113 159 113 159 PF01476.20 LysM Domain 1 44 44 32.9 5e-08 1 CL0187
Cotton_A_16322_CDS 179 221 179 221 PF01476.20 LysM Domain 1 44 44 34.2 2e-08 1 CL0187
Cotton_A_10189_CDS 12 53 10 54 PF00400.32 WD40 Repeat 3 37 38 24.7 3e-05 1 CL0186
Cotton_A_10189_CDS 63 100 62 101 PF00400.32 WD40 Repeat 2 37 38 18.8 0.0021 1 CL0186
Cotton_A_10189_CDS 108 144 107 145 PF00400.32 WD40 Repeat 2 37 38 34.8 1.9e-08 1 CL0186
Cotton_A_10189_CDS 153 189 152 189 PF00400.32 WD40 Repeat 2 37 38 26.2 1e-05 1 CL0186
Cotton_A_10189_CDS 198 239 198 240 PF00400.32 WD40 Repeat 1 37 38 26.1 1.1e-05 1 CL0186
Cotton_A_10189_CDS 313 344 306 345 PF00400.32 WD40 Repeat 8 37 38 24.4 3.6e-05 1 CL0186
Cotton_A_00587_CDS 73 95 72 96 PF13912.6 zf-C2H2_6 Domain 4 26 27 29.0 7.4e-07 1 CL0361
Cotton_A_00587_CDS 158 182 158 184 PF13912.6 zf-C2H2_6 Domain 1 25 27 38.7 7e-10 1 CL0361
Cotton_A_00587_CDS 209 233 209 234 PF13912.6 zf-C2H2_6 Domain 2 26 27 46.7 2.1e-12 1 CL0361
Cotton_A_16889_CDS 185 516 184 517 PF00344.20 SecY Family 2 305 306 305.4 4.1e-91 1 No_clan
Cotton_A_11513_CDS 654 799 650 800 PF07744.13 SPOC Domain 6 150 151 63.2 2.5e-17 1 CL0616
Cotton_A_02092_CDS 55 193 54 194 PF00892.20 EamA Family 2 136 137 39.9 4.2e-10 1 CL0184
Cotton_A_20279_CDS 100 158 94 159 PF00043.25 GST_C Domain 34 91 93 21.4 0.00021 1 CL0497
Cotton_A_20279_CDS 218 522 218 523 PF00749.21 tRNA-synt_1c Domain 1 313 314 347.4 5.8e-104 1 CL0039
Cotton_A_20279_CDS 525 702 525 702 PF03950.18 tRNA-synt_1c_C Domain 1 174 174 120.1 9e-35 1 No_clan
Cotton_A_16803_CDS 46 103 45 103 PF13855.6 LRR_8 Repeat 2 61 61 37.8 1.2e-09 1 CL0022
Cotton_A_16803_CDS 161 219 160 219 PF13855.6 LRR_8 Repeat 2 61 61 31.0 1.5e-07 1 CL0022
Cotton_A_16803_CDS 254 310 253 310 PF13855.6 LRR_8 Repeat 2 61 61 30.0 3.2e-07 1 CL0022
Cotton_A_16803_CDS 404 462 404 463 PF13855.6 LRR_8 Repeat 1 59 61 35.7 5.5e-09 1 CL0022
Cotton_A_16803_CDS 500 558 499 558 PF13855.6 LRR_8 Repeat 2 61 61 41.0 1.2e-10 1 CL0022
Cotton_A_23064_CDS 290 327 289 327 PF00400.32 WD40 Repeat 2 38 38 23.8 5.8e-05 1 CL0186
Cotton_A_01449_CDS 1 91 1 91 PF18262.1 PhetRS_B1 Domain 1 83 83 114.1 2.5e-33 1 No_clan
Cotton_A_01449_CDS 120 281 119 281 PF03483.17 B3_4 Domain 2 174 174 91.1 6.5e-26 1 CL0383
Cotton_A_01449_CDS 310 377 309 377 PF03484.15 B5 Domain 2 67 67 58.9 4.5e-16 1 CL0123
Cotton_A_01449_CDS 380 587 378 587 PF17759.1 tRNA_synthFbeta Domain 5 214 214 160.3 4.5e-47 1 CL0040
Cotton_A_15446_CDS 148 191 147 191 PF13639.6 zf-RING_2 Domain 2 44 44 51.0 1.4e-13 1 CL0229
Cotton_A_31045_CDS 22 248 22 248 PF07800.12 DUF1644 Family 1 168 168 235.8 2.8e-70 1 CL0229
Cotton_A_09589_CDS 218 293 218 294 PF14144.6 DOG1 Family 1 76 77 102.9 8.1e-30 1 No_clan
Cotton_A_05411_CDS 56 158 54 160 PF07714.17 Pkinase_Tyr Domain 3 113 259 55.3 5.8e-15 1 CL0016
Cotton_A_14177_CDS 77 427 77 428 PF03759.13 PRONE Family 1 362 363 564.5 8e-170 1 No_clan
Cotton_A_17527_CDS 32 373 31 374 PF00860.20 Xan_ur_permease Family 2 324 389 156.0 1.1e-45 1 CL0062
Cotton_A_31981_CDS 3 315 3 315 PF01112.18 Asparaginase_2 Domain 1 306 306 384.5 3e-115 1 CL0052
Cotton_A_20398_CDS 139 369 135 379 PF00931.22 NB-ARC Domain 5 251 252 183.2 4.7e-54 1 CL0023
Cotton_A_20398_CDS 505 561 504 562 PF13855.6 LRR_8 Repeat 2 59 61 48.9 4.1e-13 1 CL0022
Cotton_A_21458_CDS 101 520 101 521 PF01373.17 Glyco_hydro_14 Domain 1 401 402 387.5 6.7e-116 1 CL0058
Cotton_A_39972_CDS 16 217 16 223 PF01975.17 SurE Family 1 183 195 168.3 1.6e-49 1 No_clan
Cotton_A_34027_CDS 19 182 19 183 PF03398.14 Ist1 Family 1 163 164 173.1 4.3e-51 1 No_clan
Cotton_A_32018_CDS 603 641 599 659 PF07529.13 HSA Domain 7 45 71 33.3 4.5e-08 1 CL0023
Cotton_A_32018_CDS 1105 1152 1105 1166 PF13921.6 Myb_DNA-bind_6 Domain 1 40 60 25.7 1e-05 1 CL0123
Cotton_A_24223_CDS 66 471 63 472 PF01150.17 GDA1_CD39 Family 5 414 423 350.6 1e-104 1 CL0108
Cotton_A_31402_CDS 28 198 26 199 PF01852.19 START Domain 4 173 209 24.2 1.8e-05 1 CL0209
Cotton_A_21651_CDS 77 182 77 182 PF01453.24 B_lectin Domain 1 105 105 121.6 1.9e-35 1 No_clan
Cotton_A_21651_CDS 214 321 214 322 PF00954.20 S_locus_glycop Domain 1 110 111 80.7 1.1e-22 1 No_clan
Cotton_A_21651_CDS 343 408 342 408 PF08276.11 PAN_2 Domain 1 67 67 75.0 3.8e-21 1 CL0168
Cotton_A_21651_CDS 499 764 496 767 PF07714.17 Pkinase_Tyr Domain 4 256 259 159.2 1.1e-46 1 CL0016
Cotton_A_21651_CDS 772 814 769 814 PF11883.8 DUF3403 Family 5 46 46 41.9 7.7e-11 1 No_clan
Cotton_A_34444_CDS 198 307 177 309 PF02926.17 THUMP Domain 49 134 144 22.0 0.00014 1 No_clan
Cotton_A_16571_CDS 14 657 13 663 PF00888.22 Cullin Family 2 581 618 553.5 6.9e-166 1 No_clan
Cotton_A_16571_CDS 675 737 675 737 PF10557.9 Cullin_Nedd8 Domain 1 63 63 90.4 5.3e-26 1 CL0123
Cotton_A_37406_CDS 10 88 9 121 PF14226.6 DIOX_N Family 2 77 118 44.9 1.7e-11 1 CL0029
Cotton_A_37406_CDS 144 203 129 215 PF03171.20 2OG-FeII_Oxy Domain 8 68 101 22.4 0.00013 1 CL0029
Cotton_A_08623_CDS 69 298 67 299 PF02602.15 HEM4 Family 3 231 232 157.0 4.8e-46 1 No_clan
Cotton_A_00796_CDS 36 445 36 455 PF00067.22 p450 Domain 1 440 463 240.8 2.5e-71 1 No_clan
Cotton_A_11968_CDS 49 119 49 119 PF00076.22 RRM_1 Domain 1 70 70 76.8 8.5e-22 1 CL0221
Cotton_A_24571_CDS 5 137 5 137 PF09440.10 eIF3_N Domain 1 133 133 171.8 9.1e-51 1 No_clan
Cotton_A_24571_CDS 285 399 284 400 PF01399.27 PCI Domain 2 104 105 62.2 5.4e-17 1 CL0123
Cotton_A_09948_CDS 34 484 34 490 PF00067.22 p450 Domain 1 455 463 333.5 2e-99 1 No_clan
Cotton_A_29610_CDS 14 146 14 146 PF00380.19 Ribosomal_S9 Family 1 121 121 110.0 9.7e-32 1 CL0329
Cotton_A_00377_CDS 145 254 139 257 PF06480.15 FtsH_ext Family 9 106 109 37.8 2e-09 1 No_clan
Cotton_A_00377_CDS 366 498 365 499 PF00004.29 AAA Domain 2 131 132 138.9 1.3e-40 1 CL0023
Cotton_A_00377_CDS 528 566 526 567 PF17862.1 AAA_lid_3 Domain 6 44 45 47.2 1.4e-12 1 CL0671
Cotton_A_00377_CDS 582 763 581 764 PF01434.18 Peptidase_M41 Domain 2 190 191 219.7 2.9e-65 1 CL0126
Cotton_A_02269_CDS 245 301 245 301 PF06886.11 TPX2 Family 1 57 57 69.1 2.7e-19 1 No_clan
Cotton_A_07647_CDS 7 216 5 283 PF02458.15 Transferase Family 3 196 434 92.2 2.7e-26 1 CL0149
Cotton_A_07053_CDS 6 164 4 165 PF04573.12 SPC22 Family 3 170 171 181.7 8.1e-54 1 No_clan
Cotton_A_29474_CDS 54 369 54 369 PF14476.6 Chloroplast_duf Family 1 320 320 486.7 2.6e-146 1 No_clan
Cotton_A_21835_CDS 12 88 10 88 PF12609.8 DUF3774 Family 2 74 74 62.3 6.4e-17 1 No_clan
Cotton_A_00224_CDS 27 202 25 202 PF00186.19 DHFR_1 Domain 3 161 161 136.7 5.3e-40 1 CL0387
Cotton_A_00224_CDS 249 513 247 513 PF00303.19 Thymidylat_synt Domain 3 267 268 313.9 7.2e-94 1 No_clan
Cotton_A_20182_CDS 427 470 426 470 PF13639.6 zf-RING_2 Domain 2 44 44 45.9 5.3e-12 1 CL0229
Cotton_A_20428_CDS 93 382 93 382 PF08392.12 FAE1_CUT1_RppA Family 1 290 290 482.4 4.4e-145 1 CL0046
Cotton_A_20428_CDS 399 479 396 480 PF08541.10 ACP_syn_III_C Domain 12 89 90 38.0 1.4e-09 1 CL0046
Cotton_A_02255_CDS 548 752 536 774 PF00888.22 Cullin Family 388 587 618 91.9 3.9e-26 1 No_clan
Cotton_A_02255_CDS 818 854 812 857 PF08672.11 ANAPC2 Domain 20 56 60 27.9 2.5e-06 1 CL0123
Cotton_A_26798_CDS 23 117 22 117 PF12776.7 Myb_DNA-bind_3 Domain 2 96 96 80.4 1.5e-22 1 CL0123
Cotton_A_01458_CDS 140 266 140 266 PF05542.11 DUF760 Family 1 84 84 83.0 1.4e-23 1 No_clan
Cotton_A_31756_CDS 222 311 180 315 PF01764.25 Lipase_3 Family 55 137 142 55.7 4.7e-15 1 CL0028
Cotton_A_31756_CDS 731 829 730 861 PF01926.23 MMR_HSR1 Family 2 87 114 23.5 4.5e-05 1 CL0023
Cotton_A_39917_CDS 102 169 101 174 PF00454.27 PI3_PI4_kinase Family 2 73 250 29.6 5.7e-07 1 CL0016
Cotton_A_39917_CDS 175 310 169 312 PF00454.27 PI3_PI4_kinase Family 117 248 250 86.5 2.5e-24 1 CL0016
Cotton_A_18591_CDS 152 234 152 239 PF03088.16 Str_synth Family 1 83 89 74.9 4.1e-21 1 CL0186
Cotton_A_01399_CDS 41 218 41 225 PF01195.19 Pept_tRNA_hydro Domain 1 166 171 190.9 1.7e-56 1 No_clan
Cotton_A_13368_CDS 13 69 12 70 PF05347.15 Complex1_LYR Family 2 58 59 75.9 1.9e-21 1 CL0491
Cotton_A_40970_CDS 240 507 239 507 PF00732.19 GMC_oxred_N Domain 2 296 296 231.6 1.3e-68 1 CL0063
Cotton_A_40970_CDS 600 733 591 734 PF05199.13 GMC_oxred_C Domain 21 143 144 82.4 4.5e-23 1 No_clan
Cotton_A_33680_CDS 11 73 11 73 PF00226.31 DnaJ Domain 1 63 63 70.0 1.3e-19 1 CL0392
Cotton_A_33680_CDS 88 161 87 164 PF05207.13 zf-CSL Domain 2 56 59 49.1 3.5e-13 1 CL0167
Cotton_A_05294_CDS 59 293 53 298 PF04481.12 DUF561 Family 4 238 243 288.0 4.4e-86 1 CL0036
Cotton_A_06249_CDS 46 154 37 155 PF14226.6 DIOX_N Family 2 117 118 68.5 8.2e-19 1 CL0029
Cotton_A_06249_CDS 205 298 199 298 PF03171.20 2OG-FeII_Oxy Domain 7 101 101 89.6 1.5e-25 1 CL0029
Cotton_A_39816_CDS 19 58 19 68 PF13418.6 Kelch_4 Repeat 1 41 49 35.4 8.1e-09 1 CL0186
Cotton_A_39816_CDS 88 135 86 135 PF13415.6 Kelch_3 Domain 3 49 49 37.8 1.5e-09 1 CL0186
Cotton_A_39816_CDS 138 184 137 185 PF13415.6 Kelch_3 Domain 2 47 49 31.7 1.3e-07 1 CL0186
Cotton_A_39816_CDS 188 241 187 243 PF13415.6 Kelch_3 Domain 2 47 49 28.9 1e-06 1 CL0186
Cotton_A_41267_CDS 2 237 1 249 PF00067.22 p450 Domain 216 452 463 173.8 5.2e-51 1 No_clan
Cotton_A_25647_CDS 18 291 16 291 PF06454.11 DUF1084 Family 3 273 273 468.0 8.7e-141 1 No_clan
Cotton_A_35015_CDS 29 89 28 104 PF00445.18 Ribonuclease_T2 Domain 2 58 182 27.7 2.8e-06 1 No_clan
Cotton_A_28347_CDS 82 166 23 178 PF13019.6 Sde2_N_Ubi Domain 72 153 164 91.9 3.7e-26 1 CL0072
Cotton_A_07367_CDS 8 168 6 169 PF06127.11 DUF962 Family 3 94 95 107.3 3.2e-31 1 No_clan
Cotton_A_17723_CDS 14 174 14 175 PF00071.22 Ras Domain 1 161 162 206.7 1.5e-61 1 CL0023
Cotton_A_20902_CDS 169 359 169 362 PF02096.20 60KD_IMP Family 1 163 166 111.4 3.9e-32 1 CL0376
Cotton_A_21036_CDS 36 428 30 429 PF00501.28 AMP-binding Family 9 422 423 301.1 1e-89 1 CL0378
Cotton_A_21036_CDS 437 489 437 492 PF13193.6 AMP-binding_C Domain 1 53 76 36.9 5.4e-09 1 CL0531
Cotton_A_07553_CDS 72 359 70 359 PF08392.12 FAE1_CUT1_RppA Family 3 290 290 369.8 8.8e-111 1 CL0046
Cotton_A_07553_CDS 375 456 372 457 PF08541.10 ACP_syn_III_C Domain 11 89 90 33.3 4.2e-08 1 CL0046
Cotton_A_31829_CDS 41 206 40 207 PF04755.12 PAP_fibrillin Family 2 197 198 126.3 1.4e-36 1 No_clan
Cotton_A_21978_CDS 12 133 8 136 PF00080.20 Sod_Cu Domain 6 138 142 147.1 3.6e-43 1 No_clan
Cotton_A_16773_CDS 15 141 15 141 PF02365.15 NAM Family 1 126 126 140.2 6.4e-41 1 No_clan
Cotton_A_24902_CDS 242 345 240 346 PF03763.13 Remorin_C Family 3 106 107 106.3 6.9e-31 1 No_clan
Cotton_A_06337_CDS 177 233 177 233 PF06830.11 Root_cap Family 1 57 57 93.6 5.8e-27 1 No_clan
Cotton_A_20318_CDS 2 58 1 62 PF00004.29 AAA Domain 36 95 132 37.3 3.3e-09 1 CL0023
Cotton_A_36914_CDS 277 492 273 498 PF00928.21 Adap_comp_sub Family 7 226 264 105.6 2.8e-30 1 CL0448
Cotton_A_01114_CDS 11 122 11 127 PF06094.12 GGACT Family 1 120 121 75.6 4.8e-21 1 CL0278
Cotton_A_28843_CDS 131 171 125 171 PF13259.6 DUF4050 Family 143 183 183 45.9 7.8e-12 1 No_clan
Cotton_A_24741_CDS 34 110 31 111 PF03171.20 2OG-FeII_Oxy Domain 6 100 101 44.3 2e-11 1 CL0029
Cotton_A_20789_CDS 60 210 45 224 PF01397.21 Terpene_synth Domain 19 174 192 146.0 1e-42 1 No_clan
Cotton_A_20789_CDS 257 521 256 522 PF03936.16 Terpene_synth_C Domain 2 266 267 313.3 1.3e-93 1 CL0613
Cotton_A_02026_CDS 190 233 189 233 PF01476.20 LysM Domain 2 44 44 16.9 0.0049 1 CL0187
Cotton_A_02026_CDS 378 618 364 619 PF00069.25 Pkinase Domain 28 261 264 134.2 5.2e-39 1 CL0016
Cotton_A_33158_CDS 6 153 5 153 PF02365.15 NAM Family 2 126 126 120.3 9.1e-35 1 No_clan
Cotton_A_26432_CDS 66 196 63 199 PF01565.23 FAD_binding_4 Domain 4 131 139 66.4 2.1e-18 1 CL0077
Cotton_A_09557_CDS 218 234 218 240 PF02493.20 MORN Repeat 1 17 23 13.5 0.051 1 CL0251
Cotton_A_09557_CDS 242 256 242 257 PF02493.20 MORN Repeat 1 15 23 13.5 0.051 1 CL0251
Cotton_A_09557_CDS 336 351 336 352 PF02493.20 MORN Repeat 1 16 23 18.9 0.00096 1 CL0251
Cotton_A_40192_CDS 1 82 1 88 PF00295.17 Glyco_hydro_28 Domain 147 227 325 103.1 1.5e-29 1 CL0268
Cotton_A_40192_CDS 88 147 81 156 PF00295.17 Glyco_hydro_28 Domain 264 320 325 41.0 1.2e-10 1 CL0268
Cotton_A_26952_CDS 152 444 151 444 PF07899.11 Frigida Family 2 289 289 373.7 5.9e-112 1 No_clan
Cotton_A_00671_CDS 20 92 4 93 PF02519.14 Auxin_inducible Family 18 89 90 87.6 4.7e-25 1 No_clan
Cotton_A_30421_CDS 10 412 9 412 PF03547.18 Mem_trans Family 2 371 387 420.5 4.2e-126 1 CL0064
Cotton_A_25300_CDS 11 475 9 476 PF05694.11 SBP56 Family 3 453 454 723.2 1.2e-217 1 CL0186
Cotton_A_14119_CDS 7 200 4 213 PF01150.17 GDA1_CD39 Family 47 242 423 152.5 1.4e-44 1 CL0108
Cotton_A_21122_CDS 7 76 1 78 PF11960.8 DUF3474 Family 67 134 135 90.9 7.5e-26 1 No_clan
Cotton_A_21122_CDS 87 339 51 343 PF00487.24 FA_desaturase Domain 2 247 254 112.2 3.6e-32 1 No_clan
Cotton_A_12058_CDS 7 41 6 41 PF14369.6 zinc_ribbon_9 Domain 2 35 35 50.3 2.1e-13 1 CL0167
Cotton_A_12058_CDS 187 229 186 229 PF13639.6 zf-RING_2 Domain 2 44 44 41.5 1.2e-10 1 CL0229
Cotton_A_12058_CDS 245 350 245 350 PF06547.12 DUF1117 Family 1 113 113 120.2 6e-35 1 No_clan
Cotton_A_18898_CDS 105 139 105 139 PF02037.27 SAP Family 1 35 35 36.8 2.3e-09 1 CL0306
Cotton_A_01677_CDS 7 135 6 138 PF05659.11 RPW8 Family 2 135 139 80.3 1e-22 1 No_clan
Cotton_A_01677_CDS 181 336 181 339 PF02453.17 Reticulon Family 1 154 157 72.9 2.7e-20 1 CL0484
Cotton_A_01912_CDS 10 69 9 72 PF13499.6 EF-hand_7 Domain 2 67 71 41.6 1.3e-10 1 CL0220
Cotton_A_01912_CDS 85 147 84 148 PF13499.6 EF-hand_7 Domain 2 70 71 53.7 2.1e-14 1 CL0220
Cotton_A_21401_CDS 1 62 1 70 PF03660.14 PHF5 Family 1 62 104 92.6 1.6e-26 1 No_clan
Cotton_A_17590_CDS 5 60 2 62 PF00762.19 Ferrochelatase Domain 80 135 317 61.8 5.5e-17 1 CL0043
Cotton_A_38203_CDS 34 97 34 97 PF00226.31 DnaJ Domain 1 63 63 84.7 3.4e-24 1 CL0392
Cotton_A_06820_CDS 80 152 79 152 PF01423.22 LSM Domain 2 67 67 70.5 7e-20 1 CL0527
Cotton_A_25273_CDS 3 100 2 109 PF03694.13 Erg28 Family 2 101 110 89.3 2e-25 1 No_clan
Cotton_A_29438_CDS 97 176 97 176 PF00226.31 DnaJ Domain 1 63 63 59.9 1.9e-16 1 CL0392
Cotton_A_29438_CDS 463 504 462 506 PF00249.31 Myb_DNA-binding Domain 2 38 46 25.8 8.8e-06 1 CL0123
Cotton_A_29438_CDS 590 634 589 638 PF00249.31 Myb_DNA-binding Domain 2 42 46 26.0 7.6e-06 1 CL0123
Cotton_A_15243_CDS 1114 1214 1114 1215 PF08064.13 UME Domain 1 101 102 60.6 1.1e-16 1 No_clan
Cotton_A_15243_CDS 1817 2195 1814 2195 PF02259.23 FAT Family 5 346 346 170.1 7.4e-50 1 CL0020
Cotton_A_15243_CDS 2423 2668 2421 2669 PF00454.27 PI3_PI4_kinase Family 3 249 250 165.7 1.6e-48 1 CL0016
Cotton_A_15243_CDS 2708 2739 2708 2739 PF02260.20 FATC Family 1 32 32 45.2 5.9e-12 1 No_clan
Cotton_A_26303_CDS 1 75 1 77 PF09598.10 Stm1_N Family 1 64 65 72.4 4.1e-20 1 No_clan
Cotton_A_26303_CDS 148 254 148 254 PF04774.15 HABP4_PAI-RBP1 Family 1 116 116 101.6 4.6e-29 1 No_clan
Cotton_A_27368_CDS 310 381 309 381 PF02201.18 SWIB Domain 2 74 74 78.4 2.8e-22 1 No_clan
Cotton_A_31004_CDS 26 305 21 316 PF03348.15 Serinc Family 16 306 429 167.7 4e-49 1 No_clan
Cotton_A_31004_CDS 318 388 304 391 PF03348.15 Serinc Family 353 425 429 63.1 2.2e-17 1 No_clan
Cotton_A_17839_CDS 105 410 103 410 PF00069.25 Pkinase Domain 3 264 264 190.3 4.1e-56 1 CL0016
Cotton_A_18378_CDS 7 110 7 112 PF14226.6 DIOX_N Family 1 116 118 101.9 3.6e-29 1 CL0029
Cotton_A_18378_CDS 166 266 162 267 PF03171.20 2OG-FeII_Oxy Domain 7 100 101 73.7 1.3e-20 1 CL0029
Cotton_A_11157_CDS 36 357 34 401 PF00743.19 FMO-like Family 6 340 532 97.6 5.8e-28 1 CL0063
Cotton_A_23607_CDS 17 105 17 116 PF01453.24 B_lectin Domain 1 94 105 85.1 4.1e-24 1 No_clan
Cotton_A_23607_CDS 125 351 108 353 PF00069.25 Pkinase Domain 44 260 264 150.6 5e-44 1 CL0016
Cotton_A_13494_CDS 26 147 26 147 PF02365.15 NAM Family 1 126 126 90.3 1.7e-25 1 No_clan
Cotton_A_16996_CDS 123 252 122 253 PF04819.12 DUF716 Family 2 137 138 135.8 7.3e-40 1 No_clan
Cotton_A_35720_CDS 232 262 231 264 PF00515.28 TPR_1 Repeat 2 32 34 33.6 2.1e-08 1 CL0020
Cotton_A_35720_CDS 267 297 265 298 PF13181.6 TPR_8 Repeat 3 33 34 12.8 0.11 1 CL0020
Cotton_A_35720_CDS 501 532 499 532 PF00515.28 TPR_1 Repeat 3 34 34 28.9 6.4e-07 1 CL0020
Cotton_A_35720_CDS 604 686 597 693 PF00085.20 Thioredoxin Domain 8 95 103 24.5 2.1e-05 1 CL0172
Cotton_A_39525_CDS 18 58 5 62 PF07647.17 SAM_2 Domain 19 60 66 24.2 2.6e-05 1 CL0003
Cotton_A_38914_CDS 11 110 10 116 PF00168.30 C2 Domain 2 97 103 75.0 4.8e-21 1 CL0154
Cotton_A_38914_CDS 275 357 274 374 PF00168.30 C2 Domain 2 91 103 20.9 0.00033 1 CL0154
Cotton_A_38914_CDS 430 543 430 543 PF00168.30 C2 Domain 1 103 103 55.8 4.3e-15 1 CL0154
Cotton_A_38914_CDS 600 712 599 712 PF00168.30 C2 Domain 2 103 103 80.1 1.3e-22 1 CL0154
Cotton_A_38914_CDS 858 1012 856 1012 PF08372.10 PRT_C Family 2 156 156 248.4 2.2e-74 1 CL0484
Cotton_A_12585_CDS 256 427 256 427 PF00270.29 DEAD Domain 1 176 176 171.6 1.3e-50 1 CL0023
Cotton_A_12585_CDS 475 572 462 572 PF00271.31 Helicase_C Family 14 111 111 90.4 9.1e-26 1 CL0023
Cotton_A_00793_CDS 75 121 75 123 PF13041.6 PPR_2 Repeat 1 48 50 38.6 8.7e-10 1 CL0020
Cotton_A_00793_CDS 150 172 150 175 PF01535.20 PPR Family 4 26 31 20.4 0.00042 1 CL0020
Cotton_A_00793_CDS 177 223 175 224 PF13041.6 PPR_2 Repeat 3 49 50 44.5 1.2e-11 1 CL0020
Cotton_A_00793_CDS 251 275 249 277 PF01535.20 PPR Family 3 27 31 15.3 0.018 1 CL0020
Cotton_A_00793_CDS 349 473 349 473 PF14432.6 DYW_deaminase Family 1 127 127 146.2 4.4e-43 1 CL0109
Cotton_A_02124_CDS 52 74 52 84 PF02146.17 SIR2 Family 1 23 177 25.9 8e-06 1 CL0085
Cotton_A_02124_CDS 87 216 79 216 PF02146.17 SIR2 Family 54 177 177 72.5 4e-20 1 CL0085
Cotton_A_09058_CDS 31 352 29 352 PF00704.28 Glyco_hydro_18 Domain 3 312 312 193.2 8.6e-57 1 CL0058
Cotton_A_09058_CDS 457 705 450 708 PF00069.25 Pkinase Domain 21 258 264 136.2 1.3e-39 1 CL0016
Cotton_A_25308_CDS 33 125 32 157 PF13947.6 GUB_WAK_bind Domain 2 93 106 39.3 8.7e-10 1 No_clan
Cotton_A_13496_CDS 14 464 13 464 PF00082.22 Peptidase_S8 Domain 2 298 298 153.4 7.7e-45 1 No_clan
Cotton_A_13496_CDS 519 614 519 615 PF17766.1 fn3_6 Domain 1 98 99 93.4 7.4e-27 1 CL0159
Cotton_A_30477_CDS 6 63 3 64 PF06364.12 DUF1068 Family 110 167 168 103.4 1.2e-29 1 No_clan
Cotton_A_24463_CDS 32 65 32 69 PF01176.19 eIF-1a Domain 1 35 64 29.5 4.9e-07 1 CL0021
Cotton_A_33274_CDS 77 130 77 134 PF01453.24 B_lectin Domain 1 54 105 35.6 1.1e-08 1 No_clan
Cotton_A_33274_CDS 333 566 323 568 PF00069.25 Pkinase Domain 47 260 264 110.9 6.5e-32 1 CL0016
Cotton_A_15121_CDS 27 210 27 210 PF16491.5 Peptidase_M48_N Domain 1 182 182 230.9 9.7e-69 1 No_clan
Cotton_A_15121_CDS 213 418 213 420 PF01435.18 Peptidase_M48 Domain 1 194 196 178.4 1.4e-52 1 CL0126
Cotton_A_30823_CDS 16 112 10 113 PF00085.20 Thioredoxin Domain 7 102 103 95.6 1.5e-27 1 CL0172
Cotton_A_05547_CDS 9 618 9 618 PF00012.20 HSP70 Family 1 599 599 870.2 5.9e-262 1 CL0108
Cotton_A_26711_CDS 28 606 28 606 PF07093.11 SGT1 Family 1 583 583 592.2 1e-177 1 No_clan
Cotton_A_29731_CDS 28 244 28 244 PF00314.17 Thaumatin Domain 1 214 214 263.0 1.9e-78 1 CL0293
Cotton_A_21303_CDS 125 178 125 178 PF11250.8 FAF Family 1 54 54 69.5 2.1e-19 1 No_clan
Cotton_A_14057_CDS 84 120 84 124 PF13639.6 zf-RING_2 Domain 1 36 44 40.0 3.7e-10 1 CL0229
Cotton_A_06543_CDS 92 186 92 186 PF00338.22 Ribosomal_S10 Family 1 98 98 113.8 3.3e-33 1 No_clan
Cotton_A_17867_CDS 27 62 26 62 PF08263.12 LRRNT_2 Family 2 41 41 26.1 7.8e-06 1 No_clan
Cotton_A_17867_CDS 84 124 66 124 PF13855.6 LRR_8 Repeat 21 61 61 29.2 5.7e-07 1 CL0022
Cotton_A_17867_CDS 335 597 332 598 PF00069.25 Pkinase Domain 4 261 264 127.4 6.1e-37 1 CL0016
Cotton_A_06068_CDS 9 327 9 328 PF00332.18 Glyco_hydro_17 Domain 1 312 313 221.6 1.8e-65 1 CL0058
Cotton_A_06068_CDS 348 416 348 419 PF07983.13 X8 Domain 1 73 76 55.7 6e-15 1 No_clan
Cotton_A_13181_CDS 165 309 164 319 PF00160.21 Pro_isomerase Domain 2 147 158 45.5 9e-12 1 CL0475
Cotton_A_09352_CDS 71 230 71 230 PF01233.19 NMT Domain 1 160 160 262.3 1.4e-78 1 CL0257
Cotton_A_18093_CDS 1 66 1 108 PF06219.12 DUF1005 Family 1 65 437 38.6 6.6e-10 1 No_clan
Cotton_A_18093_CDS 120 192 110 195 PF06219.12 DUF1005 Family 220 294 437 84.8 6.6e-24 1 No_clan
Cotton_A_18093_CDS 199 259 193 259 PF06219.12 DUF1005 Family 373 437 437 57.9 9.1e-16 1 No_clan
Cotton_A_09940_CDS 196 500 195 500 PF03595.17 SLAC1 Family 2 324 324 158.7 2.1e-46 1 No_clan
Cotton_A_16127_CDS 87 206 82 207 PF15413.6 PH_11 Domain 4 104 105 70.4 1.5e-19 1 CL0266
Cotton_A_16127_CDS 412 741 412 751 PF01237.18 Oxysterol_BP Family 1 344 373 388.6 2.4e-116 1 No_clan
Cotton_A_04559_CDS 130 163 128 165 PF06803.12 DUF1232 Family 3 35 37 33.6 2.4e-08 1 No_clan
Cotton_A_19100_CDS 197 242 194 242 PF00010.26 HLH Domain 5 53 53 51.1 9.8e-14 1 No_clan
Cotton_A_34450_CDS 4 277 3 279 PF00248.21 Aldo_ket_red Domain 2 290 294 159.8 8.5e-47 1 No_clan
Cotton_A_26221_CDS 22 85 15 86 PF07732.15 Cu-oxidase_3 Domain 54 118 119 65.8 3.5e-18 1 CL0026
Cotton_A_26221_CDS 100 246 96 247 PF00394.22 Cu-oxidase Domain 5 158 159 144.1 3.8e-42 1 CL0026
Cotton_A_05722_CDS 53 298 53 298 PF00956.18 NAP Family 1 270 270 285.5 3.5e-85 1 No_clan
Cotton_A_06059_CDS 95 114 94 114 PF00612.27 IQ Motif 2 21 21 16.4 0.0054 1 CL0220
Cotton_A_06059_CDS 117 134 116 135 PF00612.27 IQ Motif 2 19 21 14.9 0.017 1 CL0220
Cotton_A_19935_CDS 34 462 34 472 PF00067.22 p450 Domain 1 445 463 207.7 2.7e-61 1 No_clan
Cotton_A_16877_CDS 9 197 8 198 PF08638.11 Med14 Family 2 190 191 176.6 3.5e-52 1 No_clan
Cotton_A_26059_CDS 6 97 6 98 PF03195.14 LOB Family 1 98 99 123.2 5e-36 1 No_clan
Cotton_A_12857_CDS 21 116 18 119 PF12796.7 Ank_2 Repeat 4 80 83 52.1 7.2e-14 1 CL0465
Cotton_A_12857_CDS 122 183 116 184 PF12796.7 Ank_2 Repeat 26 82 83 37.6 2.4e-09 1 CL0465
Cotton_A_12857_CDS 206 259 206 259 PF13857.6 Ank_5 Repeat 1 56 56 39.6 4.4e-10 1 CL0465
Cotton_A_25264_CDS 14 62 14 62 PF00249.31 Myb_DNA-binding Domain 1 46 46 51.1 1.1e-13 1 CL0123
Cotton_A_25264_CDS 69 111 68 113 PF00249.31 Myb_DNA-binding Domain 2 44 46 39.9 3.6e-10 1 CL0123
Cotton_A_33210_CDS 44 102 42 306 PF12708.7 Pectate_lyase_3 Family 3 60 215 33.8 3e-08 1 CL0268
Cotton_A_33210_CDS 140 421 77 428 PF00295.17 Glyco_hydro_28 Domain 53 320 325 132.2 2.1e-38 1 CL0268
Cotton_A_00147_CDS 41 498 40 498 PF00083.24 Sugar_tr Family 2 452 452 358.7 4.5e-107 1 CL0015
Cotton_A_11470_CDS 6 201 6 201 PF09808.9 SNAPc_SNAP43 Family 1 191 191 165.9 9.8e-49 1 No_clan
Cotton_A_35631_CDS 127 298 127 298 PF00929.24 RNase_T Family 1 165 165 95.6 4.6e-27 1 CL0219
Cotton_A_18167_CDS 160 301 158 305 PF00004.29 AAA Domain 3 128 132 55.6 7.2e-15 1 CL0023
Cotton_A_12012_CDS 392 491 392 506 PF01103.23 Bac_surface_Ag Family 1 91 324 47.8 1.4e-12 1 CL0193
Cotton_A_29042_CDS 8 50 6 53 PF00643.24 zf-B_box Domain 3 39 42 25.8 8.7e-06 1 No_clan
Cotton_A_06944_CDS 31 53 31 56 PF13202.6 EF-hand_5 Domain 1 23 25 33.7 1.5e-08 1 CL0220
Cotton_A_06944_CDS 73 90 71 92 PF13202.6 EF-hand_5 Domain 7 24 25 15.5 0.0088 1 CL0220
Cotton_A_40998_CDS 35 86 35 89 PF16029.5 DUF4787 Family 1 46 63 49.3 3.8e-13 1 No_clan
Cotton_A_09512_CDS 354 488 354 489 PF00004.29 AAA Domain 1 131 132 139.0 1.2e-40 1 CL0023
Cotton_A_09512_CDS 518 558 516 559 PF17862.1 AAA_lid_3 Domain 4 44 45 35.4 7e-09 1 CL0671
Cotton_A_27631_CDS 257 339 256 339 PF01985.21 CRS1_YhbY Domain 2 84 84 98.3 2.1e-28 1 No_clan
Cotton_A_27631_CDS 467 538 459 538 PF01985.21 CRS1_YhbY Domain 14 84 84 38.5 9.4e-10 1 No_clan
Cotton_A_27631_CDS 667 754 667 754 PF01985.21 CRS1_YhbY Domain 1 84 84 61.5 6.3e-17 1 No_clan
Cotton_A_05255_CDS 242 311 237 311 PF13424.6 TPR_12 Repeat 6 77 77 37.0 3.2e-09 1 CL0020
Cotton_A_25583_CDS 20 74 18 78 PF03997.12 VPS28 Family 3 56 189 29.6 4.8e-07 1 CL0596
Cotton_A_25583_CDS 82 154 61 156 PF03997.12 VPS28 Family 89 162 189 60.5 1.7e-16 1 CL0596
Cotton_A_26590_CDS 31 451 30 453 PF00860.20 Xan_ur_permease Family 2 387 389 204.5 2e-60 1 CL0062
Cotton_A_17470_CDS 7 238 6 239 PF06888.12 Put_Phosphatase Family 2 233 234 308.4 2.8e-92 1 CL0137
Cotton_A_26962_CDS 309 362 307 363 PF00249.31 Myb_DNA-binding Domain 3 45 46 27.7 2.3e-06 1 CL0123
Cotton_A_00707_CDS 20 148 19 149 PF05142.12 DUF702 Family 2 149 150 170.3 3.7e-50 1 No_clan
Cotton_A_02867_CDS 268 314 256 317 PF13812.6 PPR_3 Repeat 13 59 63 18.6 0.0015 1 CL0020
Cotton_A_02867_CDS 325 365 324 370 PF13812.6 PPR_3 Repeat 2 42 63 18.4 0.0017 1 CL0020
Cotton_A_02867_CDS 378 408 378 408 PF01535.20 PPR Family 1 31 31 13.0 0.093 1 CL0020
Cotton_A_02867_CDS 410 457 410 459 PF13041.6 PPR_2 Repeat 1 48 50 49.5 3.5e-13 1 CL0020
Cotton_A_02867_CDS 519 564 519 566 PF13041.6 PPR_2 Repeat 1 48 50 30.2 3.8e-07 1 CL0020
Cotton_A_02867_CDS 587 633 587 636 PF13041.6 PPR_2 Repeat 1 47 50 52.0 5.7e-14 1 CL0020
Cotton_A_30881_CDS 17 113 16 114 PF01657.17 Stress-antifung Family 2 94 95 78.7 3.8e-22 1 No_clan
Cotton_A_30881_CDS 133 209 129 215 PF01657.17 Stress-antifung Family 7 77 95 36.0 8e-09 1 No_clan
Cotton_A_30881_CDS 303 570 302 572 PF00069.25 Pkinase Domain 2 259 264 156.4 8.6e-46 1 CL0016
Cotton_A_17331_CDS 14 140 14 140 PF00168.30 C2 Domain 1 103 103 90.0 9.9e-26 1 CL0154
Cotton_A_17331_CDS 344 378 343 378 PF00614.22 PLDc Family 2 28 28 29.4 6e-07 1 CL0479
Cotton_A_17331_CDS 689 713 686 713 PF00614.22 PLDc Family 4 28 28 23.9 3.2e-05 1 CL0479
Cotton_A_17331_CDS 761 830 760 831 PF12357.8 PLD_C Family 2 71 72 94.8 2.1e-27 1 No_clan
Cotton_A_07384_CDS 225 269 225 269 PF12552.8 DUF3741 Family 1 45 45 52.0 4.8e-14 1 No_clan
Cotton_A_07384_CDS 730 877 730 877 PF14309.6 DUF4378 Family 2 165 165 97.9 7.7e-28 1 No_clan
Cotton_A_26853_CDS 71 121 67 129 PF02222.22 ATP-grasp Family 7 57 171 32.4 6.3e-08 1 CL0179
Cotton_A_24020_CDS 175 311 172 313 PF01529.20 DHHC Family 4 132 134 110.3 7.3e-32 1 No_clan
Cotton_A_06235_CDS 9 143 9 145 PF10914.8 DUF2781 Family 1 144 147 91.8 5.2e-26 1 No_clan
Cotton_A_05680_CDS 146 194 143 194 PF04570.14 zf-FLZ Domain 5 54 54 83.7 4.3e-24 1 CL0175
Cotton_A_07940_CDS 440 827 426 829 PF00503.20 G-alpha Domain 19 352 354 219.2 8.3e-65 1 CL0023
Cotton_A_15147_CDS 5 72 3 74 PF00240.23 ubiquitin Domain 3 70 72 60.9 7.2e-17 1 CL0072
Cotton_A_15147_CDS 195 259 189 261 PF00240.23 ubiquitin Domain 7 66 72 22.7 6e-05 1 CL0072
Cotton_A_36911_CDS 144 214 144 216 PF04564.15 U-box Domain 1 71 73 77.8 5.3e-22 1 CL0229
Cotton_A_08529_CDS 481 548 481 548 PF03847.13 TFIID_20kDa Domain 1 68 68 106.8 5.6e-31 1 CL0012
Cotton_A_04967_CDS 48 149 47 149 PF01453.24 B_lectin Domain 2 105 105 102.7 1.5e-29 1 No_clan
Cotton_A_04967_CDS 182 294 182 294 PF00954.20 S_locus_glycop Domain 1 111 111 97.9 4.9e-28 1 No_clan
Cotton_A_04967_CDS 318 377 315 377 PF08276.11 PAN_2 Domain 3 67 67 63.6 1.4e-17 1 CL0168
Cotton_A_25259_CDS 230 462 229 464 PF13641.6 Glyco_tranf_2_3 Domain 3 228 230 83.0 2.8e-23 1 CL0110
Cotton_A_01529_CDS 84 364 79 366 PF00069.25 Pkinase Domain 6 260 264 131.4 3.6e-38 1 CL0016
Cotton_A_30260_CDS 62 248 45 249 PF12819.7 Malectin_like Domain 132 335 336 54.4 1.1e-14 1 CL0202
Cotton_A_17878_CDS 78 130 77 130 PF14416.6 PMR5N Domain 2 53 53 76.3 1.7e-21 1 No_clan
Cotton_A_17878_CDS 131 419 131 419 PF13839.6 PC-Esterase Family 1 283 283 318.2 6.3e-95 1 CL0264
Cotton_A_21019_CDS 5 62 3 62 PF06624.12 RAMP4 Family 3 60 60 92.8 1e-26 1 No_clan
Cotton_A_18612_CDS 13 282 13 285 PF00067.22 p450 Domain 1 268 463 97.7 6.5e-28 1 No_clan
Cotton_A_05866_CDS 280 326 279 327 PF13920.6 zf-C3HC4_3 Domain 2 49 50 41.8 7e-11 1 CL0229
Cotton_A_30824_CDS 5 370 5 370 PF03223.15 V-ATPase_C Family 1 370 370 420.7 6.5e-126 1 No_clan
Cotton_A_28040_CDS 830 900 827 900 PF16135.5 Jas Family 5 76 76 65.1 4.8e-18 1 No_clan
Cotton_A_18835_CDS 66 147 41 154 PF07714.17 Pkinase_Tyr Domain 32 116 259 30.8 1.6e-07 1 CL0016
Cotton_A_27669_CDS 154 255 154 256 PF02362.21 B3 Family 1 100 101 77.2 7e-22 1 CL0405
Cotton_A_27669_CDS 280 363 280 363 PF06507.13 Auxin_resp Family 1 83 83 110.2 4.3e-32 1 No_clan
Cotton_A_27669_CDS 828 919 797 923 PF02309.16 AUX_IAA Family 121 232 237 37.9 1.7e-09 1 CL0072
Cotton_A_18227_CDS 79 108 78 108 PF01535.20 PPR Family 2 31 31 13.2 0.079 1 CL0020
Cotton_A_18227_CDS 179 209 179 209 PF01535.20 PPR Family 1 31 31 24.4 2.2e-05 1 CL0020
Cotton_A_18227_CDS 211 257 211 260 PF13041.6 PPR_2 Repeat 1 47 50 44.4 1.3e-11 1 CL0020
Cotton_A_18227_CDS 320 346 318 347 PF01535.20 PPR Family 4 30 31 18.3 0.0019 1 CL0020
Cotton_A_18227_CDS 350 396 349 398 PF13041.6 PPR_2 Repeat 2 48 50 41.7 9.9e-11 1 CL0020
Cotton_A_18227_CDS 450 498 450 499 PF13041.6 PPR_2 Repeat 1 49 50 45.7 5.3e-12 1 CL0020
Cotton_A_18227_CDS 525 549 524 552 PF01535.20 PPR Family 2 26 31 18.1 0.0022 1 CL0020
Cotton_A_18227_CDS 624 748 624 748 PF14432.6 DYW_deaminase Family 1 127 127 146.7 3e-43 1 CL0109
Cotton_A_17181_CDS 54 381 54 381 PF05055.12 DUF677 Family 1 336 336 453.0 5e-136 1 CL0133
Cotton_A_20794_CDS 15 106 2 110 PF01397.21 Terpene_synth Domain 21 118 192 80.8 9.8e-23 1 No_clan
Cotton_A_15660_CDS 25 278 21 278 PF00069.25 Pkinase Domain 5 264 264 241.8 7.6e-72 1 CL0016
Cotton_A_28968_CDS 58 206 57 206 PF04043.15 PMEI Domain 2 154 154 79.9 2.4e-22 1 No_clan
Cotton_A_28968_CDS 267 560 267 564 PF01095.19 Pectinesterase Family 1 295 298 438.8 6.3e-132 1 CL0268
Cotton_A_06798_CDS 12 166 12 167 PF02518.26 HATPase_c Domain 1 111 112 55.8 5.7e-15 1 CL0025
Cotton_A_06798_CDS 169 667 169 681 PF00183.18 HSP90 Family 1 504 517 780.4 9e-235 1 No_clan
Cotton_A_33838_CDS 39 199 39 201 PF00071.22 Ras Domain 1 160 162 63.4 1.9e-17 1 CL0023
Cotton_A_26071_CDS 63 518 61 533 PF00067.22 p450 Domain 2 447 463 258.2 1.4e-76 1 No_clan
Cotton_A_16413_CDS 18 180 18 181 PF14306.6 PUA_2 Domain 1 158 159 151.3 1.7e-44 1 CL0178
Cotton_A_16413_CDS 189 412 189 412 PF01747.17 ATP-sulfurylase Domain 1 212 212 218.5 6.8e-65 1 CL0039
Cotton_A_00677_CDS 10 77 4 78 PF02519.14 Auxin_inducible Family 22 89 90 88.5 2.4e-25 1 No_clan
Cotton_A_25603_CDS 305 454 298 459 PF00270.29 DEAD Domain 9 170 176 32.1 8.7e-08 1 CL0023
Cotton_A_25603_CDS 559 691 557 692 PF00271.31 Helicase_C Family 3 110 111 52.2 6.4e-14 1 CL0023
Cotton_A_25603_CDS 755 841 755 861 PF04408.23 HA2 Domain 1 106 108 75.6 3.2e-21 1 No_clan
Cotton_A_25603_CDS 911 992 910 992 PF07717.16 OB_NTP_bind Domain 2 83 83 60.0 2.2e-16 1 CL0021
Cotton_A_25603_CDS 1099 1161 1099 1161 PF00035.26 dsrm Domain 1 67 67 41.0 2.4e-10 1 CL0196
Cotton_A_06492_CDS 64 109 63 112 PF13833.6 EF-hand_8 Domain 2 50 55 21.5 0.00015 1 CL0220
Cotton_A_06492_CDS 122 187 121 193 PF13499.6 EF-hand_7 Domain 2 65 71 34.9 1.5e-08 1 CL0220
Cotton_A_12725_CDS 10 162 1 167 PF07086.12 Jagunal Family 8 171 187 36.2 6.2e-09 1 No_clan
Cotton_A_07138_CDS 29 121 28 125 PF00413.24 Peptidase_M10 Domain 2 91 158 70.3 1.6e-19 1 CL0126
Cotton_A_05984_CDS 32 65 30 66 PF08263.12 LRRNT_2 Family 3 40 41 23.8 4e-05 1 No_clan
Cotton_A_33461_CDS 146 233 146 233 PF00736.19 EF1_GNE Domain 1 90 90 114.7 1.6e-33 1 No_clan
Cotton_A_01645_CDS 28 269 25 273 PF01151.18 ELO Family 4 245 250 113.0 1.6e-32 1 No_clan
Cotton_A_10365_CDS 108 394 106 395 PF07899.11 Frigida Family 3 288 289 319.8 1.6e-95 1 No_clan
Cotton_A_27115_CDS 286 342 284 342 PF13855.6 LRR_8 Repeat 3 61 61 27.1 2.6e-06 1 CL0022
Cotton_A_27115_CDS 514 574 514 574 PF13855.6 LRR_8 Repeat 1 61 61 28.2 1.2e-06 1 CL0022
Cotton_A_27115_CDS 655 714 654 714 PF13855.6 LRR_8 Repeat 2 61 61 37.3 1.7e-09 1 CL0022
Cotton_A_03190_CDS 49 208 46 213 PF00270.29 DEAD Domain 4 168 176 51.3 1.1e-13 1 CL0023
Cotton_A_03190_CDS 396 512 394 516 PF00271.31 Helicase_C Family 3 107 111 58.8 5.9e-16 1 CL0023
Cotton_A_34473_CDS 44 142 19 153 PF00293.28 NUDIX Domain 16 120 131 40.1 3.2e-10 1 CL0261
Cotton_A_36924_CDS 65 330 65 331 PF00295.17 Glyco_hydro_28 Domain 1 263 325 292.4 3.9e-87 1 CL0268
Cotton_A_10775_CDS 73 280 73 281 PF07859.13 Abhydrolase_3 Domain 1 210 211 153.8 5.6e-45 1 CL0028
Cotton_A_23070_CDS 15 45 15 45 PF01535.20 PPR Family 1 31 31 21.3 0.00021 1 CL0020
Cotton_A_23070_CDS 47 96 47 96 PF13041.6 PPR_2 Repeat 1 50 50 60.8 1e-16 1 CL0020
Cotton_A_23070_CDS 117 166 117 166 PF13041.6 PPR_2 Repeat 1 50 50 59.2 3.3e-16 1 CL0020
Cotton_A_23070_CDS 188 236 187 236 PF13041.6 PPR_2 Repeat 2 50 50 64.8 6e-18 1 CL0020
Cotton_A_23070_CDS 257 306 257 306 PF13041.6 PPR_2 Repeat 1 50 50 66.8 1.4e-18 1 CL0020
Cotton_A_23070_CDS 323 355 323 356 PF12854.7 PPR_1 Repeat 1 33 34 37.3 1.6e-09 1 CL0020
Cotton_A_23070_CDS 363 411 362 411 PF13041.6 PPR_2 Repeat 2 50 50 60.2 1.7e-16 1 CL0020
Cotton_A_23070_CDS 429 461 428 461 PF12854.7 PPR_1 Repeat 2 34 34 28.0 1.3e-06 1 CL0020
Cotton_A_00691_CDS 49 265 48 271 PF01370.21 Epimerase Family 2 230 241 60.7 1.4e-16 1 CL0063
Cotton_A_00691_CDS 299 345 299 345 PF08338.11 DUF1731 Family 1 47 47 66.4 1.4e-18 1 No_clan
Cotton_A_32770_CDS 77 106 77 107 PF01535.20 PPR Family 1 30 31 20.2 0.00049 1 CL0020
Cotton_A_32770_CDS 151 176 151 178 PF01535.20 PPR Family 4 29 31 15.5 0.015 1 CL0020
Cotton_A_32770_CDS 177 223 176 225 PF13041.6 PPR_2 Repeat 2 47 50 35.5 8.2e-09 1 CL0020
Cotton_A_32770_CDS 278 326 278 327 PF13041.6 PPR_2 Repeat 1 49 50 38.3 1.1e-09 1 CL0020
Cotton_A_32770_CDS 354 377 352 379 PF01535.20 PPR Family 3 26 31 14.8 0.025 1 CL0020
Cotton_A_02784_CDS 68 130 68 130 PF00226.31 DnaJ Domain 1 63 63 70.8 7.5e-20 1 CL0392
Cotton_A_26788_CDS 1 68 1 71 PF00891.18 Methyltransf_2 Domain 120 188 210 73.7 1.2e-20 1 CL0063
Cotton_A_24931_CDS 328 535 307 548 PF00561.20 Abhydrolase_1 Domain 52 243 257 27.2 2.7e-06 1 CL0028
Cotton_A_24931_CDS 677 709 674 713 PF00010.26 HLH Domain 4 36 53 23.1 5.4e-05 1 No_clan
Cotton_A_21584_CDS 23 164 21 165 PF01694.22 Rhomboid Family 3 149 150 140.5 4e-41 1 CL0207
Cotton_A_20097_CDS 69 146 69 147 PF10252.9 PP28 Domain 1 84 85 96.8 7.5e-28 1 No_clan
Cotton_A_04303_CDS 102 270 102 270 PF11891.8 RETICULATA-like Family 1 177 177 223.9 1.2e-66 1 No_clan
Cotton_A_19204_CDS 72 204 64 205 PF02815.19 MIR Domain 34 181 186 49.4 4.8e-13 1 CL0066
Cotton_A_17686_CDS 76 119 75 120 PF00628.29 PHD Domain 2 51 52 33.5 2.8e-08 1 CL0390
Cotton_A_17686_CDS 662 711 660 712 PF00385.24 Chromo Domain 3 53 54 35.6 6.3e-09 1 CL0049
Cotton_A_17686_CDS 766 1044 754 1044 PF00176.23 SNF2_N Family 52 350 350 199.8 4.9e-59 1 CL0023
Cotton_A_17686_CDS 1073 1181 1066 1181 PF00271.31 Helicase_C Family 8 111 111 61.4 9.3e-17 1 CL0023
Cotton_A_17686_CDS 1360 1401 1345 1404 PF06465.13 DUF1087 Domain 16 57 62 31.1 1.7e-07 1 No_clan
Cotton_A_13614_CDS 77 347 74 352 PF00069.25 Pkinase Domain 5 256 264 94.8 5.6e-27 1 CL0016
Cotton_A_24159_CDS 41 272 33 272 PF00481.21 PP2C Family 10 258 258 188.3 1.8e-55 1 CL0238
Cotton_A_10437_CDS 15 72 12 73 PF18052.1 Rx_N Domain 2 55 93 35.1 1.2e-08 1 No_clan
Cotton_A_13994_CDS 188 244 188 244 PF06886.11 TPX2 Family 1 57 57 71.2 6.3e-20 1 No_clan
Cotton_A_22895_CDS 27 260 25 268 PF00139.19 Lectin_legB Domain 3 237 249 220.0 3.5e-65 1 CL0004
Cotton_A_22895_CDS 332 417 330 441 PF07714.17 Pkinase_Tyr Domain 3 95 259 68.8 4.2e-19 1 CL0016
Cotton_A_14069_CDS 28 96 18 100 PF10502.9 Peptidase_S26 Domain 61 133 138 28.2 1.3e-06 1 CL0299
Cotton_A_22783_CDS 14 71 14 71 PF08246.12 Inhibitor_I29 Domain 1 58 58 57.9 1e-15 1 No_clan
Cotton_A_22783_CDS 101 316 100 316 PF00112.23 Peptidase_C1 Domain 2 218 218 270.3 1.6e-80 1 CL0125
Cotton_A_11498_CDS 157 304 142 305 PF00481.21 PP2C Family 110 257 258 158.0 3.4e-46 1 CL0238
Cotton_A_05632_CDS 102 159 102 159 PF03106.15 WRKY Domain 1 59 59 86.7 8.6e-25 1 CL0274
Cotton_A_14071_CDS 10 63 8 67 PF00226.31 DnaJ Domain 6 55 63 42.3 6e-11 1 CL0392
Cotton_A_25232_CDS 62 603 62 606 PF07058.11 MAP70 Family 1 550 554 973.2 4e-293 1 No_clan
Cotton_A_24706_CDS 49 275 48 280 PF17681.1 GCP_N_terminal Domain 2 196 306 53.9 2.1e-14 1 CL0540
Cotton_A_26172_CDS 19 52 18 53 PF03094.15 Mlo Family 2 35 479 39.1 2.9e-10 1 No_clan
Cotton_A_26172_CDS 52 402 51 403 PF03094.15 Mlo Family 130 478 479 606.9 2e-182 1 No_clan
Cotton_A_14219_CDS 53 94 52 99 PF00643.24 zf-B_box Domain 2 37 42 29.2 7.7e-07 1 No_clan
Cotton_A_04838_CDS 67 312 61 319 PF00481.21 PP2C Family 7 250 258 114.3 7.3e-33 1 CL0238
Cotton_A_21795_CDS 25 457 25 458 PF00501.28 AMP-binding Family 1 422 423 265.9 4.9e-79 1 CL0378
Cotton_A_21795_CDS 466 545 466 545 PF13193.6 AMP-binding_C Domain 1 76 76 62.0 7.9e-17 1 CL0531
Cotton_A_37004_CDS 11 114 11 115 PF09177.11 Syntaxin-6_N Domain 1 98 99 46.8 3.2e-12 1 No_clan
Cotton_A_06139_CDS 90 365 86 366 PF07714.17 Pkinase_Tyr Domain 5 258 259 155.4 1.7e-45 1 CL0016
Cotton_A_13483_CDS 6 76 6 79 PF04564.15 U-box Domain 1 70 73 73.1 1.5e-20 1 CL0229
Cotton_A_23651_CDS 13 75 13 75 PF00462.24 Glutaredoxin Domain 1 60 60 43.0 3.8e-11 1 CL0172
Cotton_A_17817_CDS 83 235 81 245 PF02536.14 mTERF Family 3 161 314 80.1 1.3e-22 1 No_clan
Cotton_A_17817_CDS 249 354 237 355 PF02536.14 mTERF Family 211 313 314 45.7 3.9e-12 1 No_clan
Cotton_A_16638_CDS 74 332 74 334 PF01501.20 Glyco_transf_8 Family 1 254 256 166.1 1.1e-48 1 CL0110
Cotton_A_04292_CDS 121 393 116 393 PF07714.17 Pkinase_Tyr Domain 6 259 259 166.2 8.4e-49 1 CL0016
Cotton_A_00245_CDS 88 143 86 149 PF07716.15 bZIP_2 Family 3 54 54 45.8 4.7e-12 1 CL0018
Cotton_A_09542_CDS 50 230 42 230 PF05176.14 ATP-synt_10 Family 80 257 257 86.5 1.7e-24 1 No_clan
Cotton_A_33803_CDS 583 630 582 630 PF02042.15 RWP-RK Family 2 49 49 88.7 1.7e-25 1 No_clan
Cotton_A_33803_CDS 891 971 890 972 PF00564.24 PB1 Domain 2 83 84 61.4 6e-17 1 CL0072
Cotton_A_23166_CDS 15 175 15 176 PF00071.22 Ras Domain 1 161 162 207.5 8.7e-62 1 CL0023
Cotton_A_39808_CDS 46 103 45 105 PF02297.17 COX6B Domain 2 74 76 61.1 9.2e-17 1 CL0351
Cotton_A_05714_CDS 157 453 154 453 PF00481.21 PP2C Family 6 258 258 211.2 2e-62 1 CL0238
Cotton_A_02534_CDS 174 355 174 355 PF00270.29 DEAD Domain 1 176 176 169.6 5.5e-50 1 CL0023
Cotton_A_02534_CDS 390 505 389 505 PF00271.31 Helicase_C Family 2 111 111 103.9 6e-30 1 CL0023
Cotton_A_34490_CDS 31 201 31 201 PF01397.21 Terpene_synth Domain 1 192 192 208.7 6.1e-62 1 No_clan
Cotton_A_34490_CDS 232 497 232 497 PF03936.16 Terpene_synth_C Domain 1 267 267 347.0 6.5e-104 1 CL0613
Cotton_A_03128_CDS 11 92 11 92 PF01198.19 Ribosomal_L31e Family 1 82 82 144.8 6.7e-43 1 No_clan
Cotton_A_03672_CDS 32 93 32 94 PF01176.19 eIF-1a Domain 1 63 64 74.4 4.6e-21 1 CL0021
Cotton_A_38950_CDS 29 140 29 143 PF00072.24 Response_reg Domain 1 109 112 67.2 1.3e-18 1 CL0304
Cotton_A_38950_CDS 472 514 472 515 PF06203.14 CCT Motif 1 43 44 55.8 3.3e-15 1 CL0281
Cotton_A_08499_CDS 28 541 26 542 PF05701.11 WEMBL Family 3 560 562 71.8 4.7e-20 1 No_clan
Cotton_A_02615_CDS 7 127 1 127 PF02469.22 Fasciclin Domain 12 128 128 72.8 2.8e-20 1 No_clan
Cotton_A_24847_CDS 57 119 55 119 PF13499.6 EF-hand_7 Domain 3 71 71 40.8 2.2e-10 1 CL0220
Cotton_A_24847_CDS 142 191 141 191 PF13833.6 EF-hand_8 Domain 2 53 55 36.7 2.8e-09 1 CL0220
Cotton_A_01857_CDS 80 203 56 213 PF04072.14 LCM Family 50 146 188 42.1 8.5e-11 1 CL0063
Cotton_A_15267_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 53.5 2e-14 1 CL0123
Cotton_A_15267_CDS 67 111 67 112 PF00249.31 Myb_DNA-binding Domain 1 45 46 59.8 2.1e-16 1 CL0123
Cotton_A_20040_CDS 471 786 471 802 PF01103.23 Bac_surface_Ag Family 1 303 324 54.7 1.1e-14 1 CL0193
Cotton_A_36754_CDS 33 142 33 145 PF13676.6 TIR_2 Domain 1 115 118 61.9 8.5e-17 1 CL0173
Cotton_A_26859_CDS 100 121 100 122 PF00560.33 LRR_1 Repeat 1 22 23 10.6 0.72 1 CL0022
Cotton_A_26859_CDS 124 183 123 183 PF13855.6 LRR_8 Repeat 2 61 61 37.2 1.8e-09 1 CL0022
Cotton_A_26859_CDS 477 736 471 739 PF00069.25 Pkinase Domain 7 260 264 150.6 5.1e-44 1 CL0016
Cotton_A_28392_CDS 88 174 84 182 PF00085.20 Thioredoxin Domain 5 93 103 28.5 1.1e-06 1 CL0172
Cotton_A_23373_CDS 12 81 11 82 PF07983.13 X8 Domain 2 75 76 71.6 6.3e-20 1 No_clan
Cotton_A_22096_CDS 5 466 5 499 PF00743.19 FMO-like Family 1 416 532 109.0 2.1e-31 1 CL0063
Cotton_A_25524_CDS 33 146 32 148 PF07732.15 Cu-oxidase_3 Domain 2 117 119 128.5 1.2e-37 1 CL0026
Cotton_A_25524_CDS 159 295 158 296 PF00394.22 Cu-oxidase Domain 2 158 159 129.0 1.7e-37 1 CL0026
Cotton_A_25524_CDS 391 513 376 517 PF07731.14 Cu-oxidase_2 Domain 17 133 137 94.2 5.5e-27 1 CL0026
Cotton_A_39077_CDS 124 296 124 315 PF01103.23 Bac_surface_Ag Family 1 166 324 49.1 5.4e-13 1 CL0193
Cotton_A_24580_CDS 3 113 1 117 PF03140.15 DUF247 Family 67 183 397 67.6 1.2e-18 1 No_clan
Cotton_A_39315_CDS 48 99 47 99 PF13855.6 LRR_8 Repeat 10 61 61 28.1 1.3e-06 1 CL0022
Cotton_A_03155_CDS 99 154 99 154 PF08381.11 BRX Domain 1 56 56 99.0 6.9e-29 1 No_clan
Cotton_A_08088_CDS 81 105 80 105 PF12108.8 SF3a60_bindingd Domain 2 26 27 44.9 7.8e-12 1 No_clan
Cotton_A_08088_CDS 127 206 127 206 PF16837.5 SF3A3 Domain 1 79 79 85.0 3.9e-24 1 No_clan
Cotton_A_08088_CDS 245 304 245 304 PF13297.6 Telomere_Sde2_2 Domain 1 60 60 84.7 2.5e-24 1 No_clan
Cotton_A_08088_CDS 331 508 330 508 PF11931.8 DUF3449 Family 2 184 184 261.3 4.3e-78 1 CL0361
Cotton_A_12762_CDS 36 85 36 88 PF01842.25 ACT Domain 1 53 67 31.8 8.8e-08 1 CL0070
Cotton_A_12762_CDS 130 183 129 200 PF01842.25 ACT Domain 2 49 67 38.1 9.2e-10 1 CL0070
Cotton_A_12762_CDS 320 379 318 384 PF01842.25 ACT Domain 3 62 67 32.6 5.1e-08 1 CL0070
Cotton_A_15086_CDS 4 100 3 104 PF08555.10 DUF1754 Family 2 94 98 63.4 2.7e-17 1 No_clan
Cotton_A_30745_CDS 47 250 47 314 PF00069.25 Pkinase Domain 1 198 264 162.4 1.3e-47 1 CL0016
Cotton_A_40722_CDS 99 393 97 395 PF00520.31 Ion_trans Family 4 243 245 70.5 1.2e-19 1 CL0030
Cotton_A_40722_CDS 489 577 486 582 PF00027.29 cNMP_binding Domain 6 84 89 31.3 1.6e-07 1 CL0029
Cotton_A_35851_CDS 49 190 46 190 PF00792.24 PI3K_C2 Domain 4 140 140 140.6 3e-41 1 CL0154
Cotton_A_35851_CDS 276 451 275 458 PF00613.20 PI3Ka Family 2 177 185 215.1 5e-64 1 CL0020
Cotton_A_35851_CDS 559 728 558 731 PF00454.27 PI3_PI4_kinase Family 2 218 250 129.7 1.6e-37 1 CL0016
Cotton_A_08489_CDS 61 527 37 530 PF00939.19 Na_sulph_symp Family 27 469 472 213.3 7e-63 1 CL0182
Cotton_A_07043_CDS 166 233 166 235 PF00076.22 RRM_1 Domain 1 68 70 51.8 5.4e-14 1 CL0221
Cotton_A_07043_CDS 262 331 262 331 PF00076.22 RRM_1 Domain 1 70 70 45.0 7.1e-12 1 CL0221
Cotton_A_10912_CDS 35 294 28 301 PF03982.13 DAGAT Family 10 288 297 251.8 6.6e-75 1 CL0228
Cotton_A_10110_CDS 338 364 337 365 PF01535.20 PPR Family 2 28 31 16.0 0.01 1 CL0020
Cotton_A_10110_CDS 418 467 415 469 PF13812.6 PPR_3 Repeat 11 60 63 27.9 1.9e-06 1 CL0020
Cotton_A_10110_CDS 493 522 492 522 PF01535.20 PPR Family 2 31 31 13.1 0.091 1 CL0020
Cotton_A_10110_CDS 560 605 556 608 PF13812.6 PPR_3 Repeat 14 60 63 28.5 1.2e-06 1 CL0020
Cotton_A_10110_CDS 643 673 643 673 PF01535.20 PPR Family 1 31 31 19.6 0.00074 1 CL0020
Cotton_A_38575_CDS 291 381 291 381 PF06507.13 Auxin_resp Family 1 83 83 108.1 2e-31 1 No_clan
Cotton_A_38575_CDS 1074 1163 1065 1167 PF02309.16 AUX_IAA Family 123 232 237 38.7 9.6e-10 1 CL0072
Cotton_A_16680_CDS 19 98 19 98 PF17927.1 Ins134_P3_kin_N Domain 1 80 80 122.5 6.8e-36 1 CL0483
Cotton_A_16680_CDS 119 226 117 227 PF05770.11 Ins134_P3_kin Domain 3 110 201 149.3 9.5e-44 1 CL0179
Cotton_A_37981_CDS 92 365 91 366 PF00483.23 NTP_transferase Family 2 247 248 229.3 5e-68 1 CL0110
Cotton_A_07875_CDS 92 597 92 597 PF03141.16 Methyltransf_29 Family 1 506 506 764.6 4.2e-230 1 CL0063
Cotton_A_03234_CDS 12 118 10 122 PF00572.18 Ribosomal_L13 Family 3 120 125 36.5 5e-09 1 No_clan
Cotton_A_21253_CDS 285 785 285 785 PF00176.23 SNF2_N Family 1 349 350 289.6 2.4e-86 1 CL0023
Cotton_A_21253_CDS 1359 1408 1359 1408 PF00097.25 zf-C3HC4 Domain 1 41 41 24.9 1.3e-05 1 CL0229
Cotton_A_30834_CDS 95 136 92 145 PF07716.15 bZIP_2 Family 8 48 54 48.8 5.3e-13 1 CL0018
Cotton_A_04922_CDS 178 429 178 438 PF03514.14 GRAS Family 1 254 374 264.0 2e-78 1 CL0063
Cotton_A_10029_CDS 1 77 1 77 PF00421.19 PSII Family 1 77 507 138.2 3.5e-40 1 No_clan
Cotton_A_10029_CDS 76 465 75 466 PF00421.19 PSII Family 110 506 507 639.8 3e-192 1 No_clan
Cotton_A_26556_CDS 45 97 44 99 PF00013.29 KH_1 Domain 2 55 66 46.6 2.2e-12 1 CL0007
Cotton_A_26556_CDS 136 203 135 204 PF00013.29 KH_1 Domain 2 65 66 53.6 1.4e-14 1 CL0007
Cotton_A_08036_CDS 14 308 14 321 PF00899.21 ThiF Domain 1 226 244 95.4 3.3e-27 1 CL0063
Cotton_A_29965_CDS 62 385 62 392 PF01715.17 IPPT Domain 1 219 228 164.1 4.2e-48 1 CL0023
Cotton_A_35984_CDS 53 324 24 325 PF00389.30 2-Hacid_dh Domain 36 133 134 59.1 3.5e-16 1 CL0325
Cotton_A_35984_CDS 120 293 120 293 PF02826.19 2-Hacid_dh_C Domain 1 178 178 152.5 7.1e-45 1 CL0063
Cotton_A_28286_CDS 94 115 93 115 PF13516.6 LRR_6 Repeat 2 23 24 11.1 0.34 1 CL0022
Cotton_A_28286_CDS 156 170 154 172 PF13516.6 LRR_6 Repeat 3 17 24 11.3 0.29 1 CL0022
Cotton_A_28286_CDS 205 226 203 226 PF13516.6 LRR_6 Repeat 3 24 24 11.5 0.24 1 CL0022
Cotton_A_28286_CDS 286 345 284 345 PF13855.6 LRR_8 Repeat 3 61 61 37.4 1.6e-09 1 CL0022
Cotton_A_28286_CDS 360 417 357 417 PF13855.6 LRR_8 Repeat 4 61 61 29.8 3.8e-07 1 CL0022
Cotton_A_28286_CDS 455 475 455 477 PF00560.33 LRR_1 Repeat 1 21 23 10.8 0.65 1 CL0022
Cotton_A_28286_CDS 479 537 477 537 PF13855.6 LRR_8 Repeat 3 61 61 32.0 7.6e-08 1 CL0022
Cotton_A_28286_CDS 646 702 643 702 PF13855.6 LRR_8 Repeat 5 61 61 34.4 1.4e-08 1 CL0022
Cotton_A_24778_CDS 9 232 8 232 PF01145.25 Band_7 Family 2 178 178 74.1 1.4e-20 1 CL0433
Cotton_A_20475_CDS 248 281 248 283 PF00320.27 GATA Domain 1 34 36 55.4 3.3e-15 1 CL0167
Cotton_A_17308_CDS 173 201 172 202 PF01535.20 PPR Family 2 30 31 16.5 0.0071 1 CL0020
Cotton_A_17308_CDS 229 287 227 290 PF13812.6 PPR_3 Repeat 3 60 63 32.2 8.4e-08 1 CL0020
Cotton_A_17308_CDS 350 374 350 376 PF01535.20 PPR Family 3 27 31 13.9 0.048 1 CL0020
Cotton_A_17308_CDS 386 407 384 412 PF01535.20 PPR Family 4 25 31 13.1 0.089 1 CL0020
Cotton_A_35681_CDS 63 136 55 175 PF00078.27 RVT_1 Family 126 203 222 42.9 4e-11 1 CL0027
Cotton_A_35681_CDS 126 212 118 216 PF17919.1 RT_RNaseH_2 Domain 11 96 100 56.5 2.2e-15 1 CL0219
Cotton_A_35681_CDS 220 259 212 260 PF13456.6 RVT_3 Domain 34 73 124 23.8 3e-05 1 CL0219
Cotton_A_21763_CDS 30 75 25 88 PF03478.18 DUF295 Domain 5 47 55 22.6 5.7e-05 1 No_clan
Cotton_A_16614_CDS 2 161 1 161 PF04043.15 PMEI Domain 6 154 154 74.2 1.4e-20 1 No_clan
Cotton_A_22854_CDS 199 336 199 337 PF07534.16 TLD Domain 1 138 139 104.9 4e-30 1 No_clan
Cotton_A_25429_CDS 30 111 30 113 PF02359.18 CDC48_N Domain 1 84 85 80.6 6.9e-23 1 CL0332
Cotton_A_25429_CDS 132 195 130 196 PF02933.17 CDC48_2 Domain 3 63 64 45.6 4.4e-12 1 CL0402
Cotton_A_25429_CDS 245 374 245 375 PF00004.29 AAA Domain 1 131 132 161.5 1.4e-47 1 CL0023
Cotton_A_25429_CDS 397 438 397 441 PF17862.1 AAA_lid_3 Domain 1 42 45 53.8 1.2e-14 1 CL0671
Cotton_A_25429_CDS 518 651 518 651 PF00004.29 AAA Domain 1 132 132 159.3 6.4e-47 1 CL0023
Cotton_A_25429_CDS 674 713 673 718 PF17862.1 AAA_lid_3 Domain 2 40 45 47.5 1.1e-12 1 CL0671
Cotton_A_29170_CDS 42 149 36 151 PF07732.15 Cu-oxidase_3 Domain 8 117 119 126.6 4.7e-37 1 CL0026
Cotton_A_29170_CDS 165 311 162 312 PF00394.22 Cu-oxidase Domain 5 158 159 127.3 5.6e-37 1 CL0026
Cotton_A_29170_CDS 435 532 401 535 PF07731.14 Cu-oxidase_2 Domain 39 134 137 88.3 3.7e-25 1 CL0026
Cotton_A_17311_CDS 12 109 12 111 PF00034.21 Cytochrom_C Domain 1 90 92 47.7 2.7e-12 1 CL0318
Cotton_A_26524_CDS 249 380 245 437 PF00069.25 Pkinase Domain 63 187 264 74.8 6.9e-21 1 CL0016
Cotton_A_07164_CDS 261 405 261 407 PF01764.25 Lipase_3 Family 1 140 142 118.0 2.9e-34 1 CL0028
Cotton_A_00650_CDS 7 70 6 71 PF00313.22 CSD Domain 2 65 66 96.6 5.7e-28 1 CL0021
Cotton_A_00650_CDS 108 122 107 124 PF00098.23 zf-CCHC Domain 2 16 18 29.6 4.8e-07 1 CL0511
Cotton_A_00650_CDS 145 160 144 160 PF00098.23 zf-CCHC Domain 2 17 18 32.3 6.4e-08 1 CL0511
Cotton_A_29322_CDS 1 76 1 78 PF01249.18 Ribosomal_S21e Family 1 76 79 130.3 2.1e-38 1 No_clan
Cotton_A_14878_CDS 280 408 194 430 PF00201.18 UDPGT Family 275 381 499 64.4 8.8e-18 1 CL0113
Cotton_A_12217_CDS 17 110 13 113 PF14368.6 LTP_2 Family 5 93 97 35.2 9.7e-09 1 CL0482
Cotton_A_27922_CDS 2 265 1 291 PF00305.19 Lipoxygenase Domain 162 441 674 348.3 9e-104 1 No_clan
Cotton_A_35922_CDS 34 96 24 97 PF00189.20 Ribosomal_S3_C Domain 16 78 83 62.9 3.1e-17 1 No_clan
Cotton_A_35922_CDS 97 170 87 188 PF00252.18 Ribosomal_L16 Family 12 79 132 47.6 1.6e-12 1 No_clan
Cotton_A_08528_CDS 10 42 9 43 PF08880.11 QLQ Domain 2 34 35 56.0 2.4e-15 1 No_clan
Cotton_A_08528_CDS 74 116 74 116 PF08879.10 WRC Domain 1 43 43 75.7 1.7e-21 1 No_clan
Cotton_A_03707_CDS 37 110 37 159 PF02469.22 Fasciclin Domain 1 81 128 29.6 6.5e-07 1 No_clan
Cotton_A_03707_CDS 200 328 198 328 PF02469.22 Fasciclin Domain 3 128 128 54.6 1.2e-14 1 No_clan
Cotton_A_40891_CDS 1 102 1 106 PF04825.13 Rad21_Rec8_N Family 1 105 110 126.7 4.1e-37 1 No_clan
Cotton_A_16954_CDS 2 64 1 66 PF00350.23 Dynamin_N Domain 104 166 168 32.7 7.1e-08 1 CL0023
Cotton_A_26364_CDS 115 339 104 340 PF00933.21 Glyco_hydro_3 Domain 84 318 319 109.6 2e-31 1 CL0058
Cotton_A_26364_CDS 381 611 381 611 PF01915.22 Glyco_hydro_3_C Domain 1 204 204 176.0 9.1e-52 1 No_clan
Cotton_A_26364_CDS 677 740 673 742 PF14310.6 Fn3-like Family 5 69 71 36.7 3.3e-09 1 CL0159
Cotton_A_20148_CDS 42 511 40 513 PF00232.18 Glyco_hydro_1 Domain 3 448 453 502.7 7.1e-151 1 CL0058
Cotton_A_01803_CDS 62 210 59 210 PF00005.27 ABC_tran Domain 4 137 137 80.1 2.1e-22 1 CL0023
Cotton_A_01803_CDS 373 583 373 585 PF01061.24 ABC2_membrane Family 1 208 210 114.8 3.4e-33 1 CL0181
Cotton_A_23251_CDS 242 271 242 272 PF02985.22 HEAT Repeat 1 30 31 21.8 0.00014 1 CL0020
Cotton_A_23251_CDS 361 461 360 461 PF13646.6 HEAT_2 Family 2 88 88 41.8 1e-10 1 CL0020
Cotton_A_23361_CDS 62 339 59 341 PF00069.25 Pkinase Domain 4 260 264 158.0 2.8e-46 1 CL0016
Cotton_A_14064_CDS 39 81 28 82 PF14520.6 HHH_5 Domain 14 56 57 28.5 1.8e-06 1 CL0198
Cotton_A_14064_CDS 86 311 86 312 PF08423.11 Rad51 Domain 1 254 255 306.4 1.3e-91 1 CL0023
Cotton_A_36355_CDS 15 109 8 113 PF01834.16 XRCC1_N Domain 8 107 148 20.9 0.00028 1 CL0202
Cotton_A_06147_CDS 1 96 1 96 PF01199.18 Ribosomal_L34e Family 1 94 94 129.9 3.4e-38 1 No_clan
Cotton_A_23693_CDS 40 118 29 132 PF14226.6 DIOX_N Family 18 99 118 47.2 3.2e-12 1 CL0029
Cotton_A_23693_CDS 169 269 166 271 PF03171.20 2OG-FeII_Oxy Domain 4 99 101 85.4 3e-24 1 CL0029
Cotton_A_08944_CDS 10 57 10 57 PF00319.18 SRF-TF Domain 1 48 48 69.9 8.9e-20 1 No_clan
Cotton_A_15385_CDS 135 177 135 178 PF13639.6 zf-RING_2 Domain 1 43 44 41.0 1.8e-10 1 CL0229
Cotton_A_16788_CDS 309 388 286 409 PF10213.9 MRP-S28 Family 23 102 127 62.1 6.7e-17 1 CL0337
Cotton_A_27301_CDS 8 55 8 57 PF13041.6 PPR_2 Repeat 1 48 50 36.4 4.5e-09 1 CL0020
Cotton_A_27301_CDS 84 107 84 111 PF01535.20 PPR Family 4 27 31 22.8 7.3e-05 1 CL0020
Cotton_A_27301_CDS 110 157 109 158 PF13041.6 PPR_2 Repeat 2 49 50 36.7 3.5e-09 1 CL0020
Cotton_A_27301_CDS 184 208 183 211 PF01535.20 PPR Family 2 26 31 15.7 0.013 1 CL0020
Cotton_A_27301_CDS 253 279 251 279 PF01535.20 PPR Family 5 31 31 10.8 0.48 1 CL0020
Cotton_A_27301_CDS 284 407 283 407 PF14432.6 DYW_deaminase Family 2 127 127 149.8 3.5e-44 1 CL0109
Cotton_A_37058_CDS 317 356 312 356 PF01753.18 zf-MYND Domain 4 38 38 32.8 5.3e-08 1 CL0175
Cotton_A_31521_CDS 199 267 199 267 PF00462.24 Glutaredoxin Domain 1 60 60 51.7 7.3e-14 1 CL0172
Cotton_A_33474_CDS 12 180 2 186 PF00311.17 PEPcase Family 162 331 795 135.5 1.8e-39 1 CL0151
Cotton_A_33474_CDS 205 244 205 245 PF00311.17 PEPcase Family 409 451 795 26.6 1.6e-06 1 CL0151
Cotton_A_31208_CDS 86 158 85 159 PF08806.11 Sep15_SelM Domain 2 75 76 85.3 2.3e-24 1 CL0172
Cotton_A_16797_CDS 5 45 4 47 PF00319.18 SRF-TF Domain 2 42 48 47.9 6.7e-13 1 No_clan
Cotton_A_08368_CDS 12 239 12 239 PF02309.16 AUX_IAA Family 1 237 237 281.0 9e-84 1 CL0072
Cotton_A_15664_CDS 5 145 4 145 PF02365.15 NAM Family 2 126 126 82.7 4.1e-23 1 No_clan
Cotton_A_31696_CDS 35 307 34 307 PF05910.12 DUF868 Family 2 279 279 343.1 1.4e-102 1 No_clan
Cotton_A_08782_CDS 170 239 126 245 PF00201.18 UDPGT Family 324 389 499 58.3 5.9e-16 1 CL0113
Cotton_A_19944_CDS 83 140 83 140 PF03106.15 WRKY Domain 1 59 59 94.8 2.5e-27 1 CL0274
Cotton_A_22939_CDS 537 817 535 818 PF15787.5 DUF4704 Family 4 278 279 151.2 3.3e-44 1 No_clan
Cotton_A_22939_CDS 2053 2329 2053 2329 PF02138.18 Beach Family 1 276 276 390.5 3.9e-117 1 No_clan
Cotton_A_22939_CDS 2486 2515 2478 2516 PF00400.32 WD40 Repeat 9 37 38 30.1 5.8e-07 1 CL0186
Cotton_A_22939_CDS 2562 2589 2560 2596 PF00400.32 WD40 Repeat 3 29 38 12.3 0.25 1 CL0186
Cotton_A_25909_CDS 15 260 15 262 PF06813.13 Nodulin-like Family 1 248 250 295.5 3.1e-88 1 CL0015
Cotton_A_26153_CDS 247 392 246 394 PF01764.25 Lipase_3 Family 2 140 142 112.3 1.6e-32 1 CL0028
Cotton_A_18037_CDS 37 86 34 87 PF04570.14 zf-FLZ Domain 4 53 54 73.0 9.5e-21 1 CL0175
Cotton_A_02740_CDS 22 344 21 345 PF02733.17 Dak1 Family 2 310 311 351.0 4.4e-105 1 CL0245
Cotton_A_02740_CDS 413 588 412 590 PF02734.17 Dak2 Family 2 172 174 141.1 3.2e-41 1 No_clan
Cotton_A_06939_CDS 12 87 1 87 PF04571.14 Lipin_N Family 8 84 102 89.0 1.6e-25 1 No_clan
Cotton_A_39412_CDS 1 79 1 80 PF14223.6 Retrotran_gag_2 Family 61 137 138 42.1 6.2e-11 1 CL0523
Cotton_A_12254_CDS 34 472 34 484 PF00067.22 p450 Domain 1 447 463 318.4 7.2e-95 1 No_clan
Cotton_A_32594_CDS 23 103 22 111 PF00481.21 PP2C Family 2 89 258 40.3 2.8e-10 1 CL0238
Cotton_A_32594_CDS 155 314 133 316 PF00481.21 PP2C Family 96 255 258 195.7 1e-57 1 CL0238
Cotton_A_05683_CDS 65 231 65 232 PF00504.21 Chloroa_b-bind Family 1 160 161 185.8 7.9e-55 1 No_clan
Cotton_A_23615_CDS 46 165 45 165 PF00289.22 Biotin_carb_N Domain 2 110 110 105.3 2.3e-30 1 CL0483
Cotton_A_23615_CDS 211 395 201 397 PF02786.17 CPSase_L_D2 Domain 20 209 211 156.1 8.6e-46 1 CL0179
Cotton_A_23615_CDS 442 548 441 549 PF02785.19 Biotin_carb_C Domain 2 107 108 77.7 6.2e-22 1 CL0105
Cotton_A_23615_CDS 693 758 686 758 PF00364.22 Biotin_lipoyl Domain 10 73 73 46.3 2.7e-12 1 CL0105
Cotton_A_23615_CDS 759 1498 759 1498 PF08326.12 ACC_central Family 1 733 733 615.6 1.2e-184 1 No_clan
Cotton_A_23615_CDS 1600 1656 1600 1656 PF01039.22 Carboxyl_trans Family 1 57 494 39.5 2.7e-10 1 CL0127
Cotton_A_20457_CDS 11 466 6 466 PF00171.22 Aldedh Family 7 462 462 586.1 4.1e-176 1 CL0099
Cotton_A_25485_CDS 13 133 3 135 PF05255.11 UPF0220 Family 27 160 166 81.9 3.6e-23 1 No_clan
Cotton_A_11543_CDS 41 153 41 153 PF01277.17 Oleosin Family 1 113 113 150.0 1.9e-44 1 No_clan
Cotton_A_31266_CDS 21 284 21 285 PF02548.15 Pantoate_transf Family 1 258 259 356.2 9.5e-107 1 CL0151
Cotton_A_24501_CDS 2 104 1 106 PF01764.25 Lipase_3 Family 40 140 142 64.8 7.1e-18 1 CL0028
Cotton_A_07145_CDS 3 76 3 76 PF08783.11 DWNN Domain 1 74 74 107.0 4.3e-31 1 CL0072
Cotton_A_07145_CDS 207 227 207 227 PF13696.6 zf-CCHC_2 Domain 1 21 21 37.9 1.1e-09 1 CL0511
Cotton_A_17065_CDS 63 154 61 159 PF07576.12 BRAP2 Family 3 93 99 122.3 7.8e-36 1 CL0221
Cotton_A_17065_CDS 174 215 173 215 PF13639.6 zf-RING_2 Domain 2 44 44 36.9 3.4e-09 1 CL0229
Cotton_A_17065_CDS 226 285 175 288 PF02148.19 zf-UBP Domain 1 61 64 58.1 8.2e-16 1 CL0229
Cotton_A_01549_CDS 498 563 497 563 PF00512.25 HisKA Domain 2 67 67 54.4 9.2e-15 1 CL0025
Cotton_A_01549_CDS 610 760 610 762 PF02518.26 HATPase_c Domain 1 110 112 80.3 1.5e-22 1 CL0025
Cotton_A_01549_CDS 1065 1198 1065 1201 PF00072.24 Response_reg Domain 1 109 112 65.4 4.6e-18 1 CL0304
Cotton_A_14583_CDS 42 90 38 90 PF00076.22 RRM_1 Domain 21 70 70 34.8 1.1e-08 1 CL0221
Cotton_A_14583_CDS 129 184 120 186 PF00076.22 RRM_1 Domain 13 68 70 31.9 8.7e-08 1 CL0221
Cotton_A_01285_CDS 149 270 129 281 PF00295.17 Glyco_hydro_28 Domain 53 174 325 92.7 2.2e-26 1 CL0268
Cotton_A_06565_CDS 529 619 521 621 PF04811.15 Sec23_trunk Domain 56 150 243 86.2 2.5e-24 1 CL0128
Cotton_A_06565_CDS 818 921 818 922 PF04815.15 Sec23_helical Domain 1 102 103 65.3 3.5e-18 1 No_clan
Cotton_A_29570_CDS 285 642 284 642 PF03514.14 GRAS Family 2 374 374 312.9 2.7e-93 1 CL0063
Cotton_A_22302_CDS 18 105 17 108 PF03214.13 RGP Family 2 91 342 126.5 1.3e-36 1 CL0110
Cotton_A_01917_CDS 141 163 138 164 PF00642.24 zf-CCCH Family 4 26 27 39.5 3.6e-10 1 CL0537
Cotton_A_01917_CDS 186 211 185 211 PF00642.24 zf-CCCH Family 2 27 27 31.6 1.1e-07 1 CL0537
Cotton_A_01917_CDS 232 256 231 257 PF00642.24 zf-CCCH Family 2 26 27 39.7 3e-10 1 CL0537
Cotton_A_01917_CDS 371 396 370 396 PF00642.24 zf-CCCH Family 2 27 27 26.8 3.5e-06 1 CL0537
Cotton_A_01917_CDS 417 441 416 442 PF00642.24 zf-CCCH Family 2 26 27 33.2 3.4e-08 1 CL0537
Cotton_A_21657_CDS 48 100 48 101 PF13833.6 EF-hand_8 Domain 1 54 55 63.0 1.6e-17 1 CL0220
Cotton_A_02406_CDS 155 457 154 458 PF03595.17 SLAC1 Family 2 323 324 167.4 4.8e-49 1 No_clan
Cotton_A_03192_CDS 18 109 18 109 PF07911.13 DUF1677 Family 1 89 89 127.0 2.7e-37 1 No_clan
Cotton_A_11451_CDS 162 292 74 293 PF01126.20 Heme_oxygenase Domain 70 204 205 38.9 7.6e-10 1 CL0230
Cotton_A_12032_CDS 106 150 106 150 PF13639.6 zf-RING_2 Domain 1 44 44 52.1 6.1e-14 1 CL0229
Cotton_A_33841_CDS 236 443 224 445 PF00999.21 Na_H_Exchanger Family 168 379 381 58.1 6.4e-16 1 CL0064
Cotton_A_16925_CDS 95 160 95 160 PF01106.17 NifU Family 1 67 67 90.1 7.3e-26 1 CL0232
Cotton_A_16925_CDS 176 238 176 238 PF01106.17 NifU Family 1 67 67 47.9 1.1e-12 1 CL0232
Cotton_A_09522_CDS 61 113 61 119 PF13637.6 Ank_4 Repeat 1 52 55 31.0 2.7e-07 1 CL0465
Cotton_A_09522_CDS 263 283 263 284 PF18044.1 zf-CCCH_4 Domain 1 21 22 30.7 1.9e-07 1 CL0537
Cotton_A_27422_CDS 68 519 68 538 PF00118.24 Cpn60_TCP1 Family 1 438 491 267.0 2.9e-79 1 No_clan
Cotton_A_11704_CDS 31 428 26 430 PF00450.22 Peptidase_S10 Domain 9 417 419 341.5 9.5e-102 1 CL0028
Cotton_A_38571_CDS 43 135 27 148 PF00293.28 NUDIX Domain 30 115 131 35.2 1.1e-08 1 CL0261
Cotton_A_33442_CDS 45 102 41 102 PF02824.21 TGS Family 5 60 60 62.9 2.1e-17 1 CL0072
Cotton_A_02035_CDS 4 245 4 247 PF12697.7 Abhydrolase_6 Domain 1 217 220 80.5 2.6e-22 1 CL0028
Cotton_A_03188_CDS 19 61 18 65 PF00646.33 F-box Domain 2 44 48 41.2 9.9e-11 1 CL0271
Cotton_A_08953_CDS 196 446 196 446 PF04646.12 DUF604 Family 1 256 256 357.2 4.5e-107 1 CL0110
Cotton_A_20332_CDS 66 177 66 180 PF00072.24 Response_reg Domain 1 109 112 75.8 2.8e-21 1 CL0304
Cotton_A_01658_CDS 1 164 1 164 PF14009.6 DUF4228 Family 1 179 179 94.2 1.2e-26 1 No_clan
Cotton_A_24972_CDS 32 170 31 173 PF04043.15 PMEI Domain 2 150 154 59.7 4e-16 1 No_clan
Cotton_A_12031_CDS 9 618 9 618 PF00012.20 HSP70 Family 1 599 599 866.0 1.1e-260 1 CL0108
Cotton_A_00163_CDS 64 165 62 165 PF02225.22 PA Family 3 89 89 42.4 5.2e-11 1 CL0364
Cotton_A_00163_CDS 501 521 500 521 PF12662.7 cEGF Domain 3 24 24 32.5 6e-08 1 CL0001
Cotton_A_21507_CDS 4 141 1 150 PF07899.11 Frigida Family 96 236 289 123.3 1.1e-35 1 No_clan
Cotton_A_08116_CDS 43 162 38 166 PF02466.19 Tim17 Family 7 110 111 44.1 2.3e-11 1 No_clan
Cotton_A_08116_CDS 193 243 186 244 PF00536.30 SAM_1 Domain 12 63 64 29.9 5.8e-07 1 CL0003
Cotton_A_28501_CDS 9 203 2 203 PF06045.11 Rhamnogal_lyase Family 24 213 213 299.4 1.2e-89 1 CL0103
Cotton_A_28501_CDS 358 424 357 429 PF14686.6 fn3_3 Domain 2 70 75 82.6 1.3e-23 1 CL0287
Cotton_A_28501_CDS 444 632 444 632 PF14683.6 CBM-like Domain 1 165 165 194.9 8.6e-58 1 CL0202
Cotton_A_09554_CDS 24 58 22 59 PF14538.6 Raptor_N Domain 110 144 147 34.0 2.6e-08 1 CL0093
Cotton_A_05937_CDS 78 126 78 127 PF13041.6 PPR_2 Repeat 1 49 50 32.4 7.7e-08 1 CL0020
Cotton_A_05937_CDS 183 210 182 212 PF01535.20 PPR Family 2 29 31 17.6 0.0032 1 CL0020
Cotton_A_05937_CDS 241 289 241 290 PF13041.6 PPR_2 Repeat 1 49 50 48.9 5.3e-13 1 CL0020
Cotton_A_05937_CDS 344 391 344 393 PF13041.6 PPR_2 Repeat 1 48 50 38.6 8.9e-10 1 CL0020
Cotton_A_05937_CDS 412 444 411 444 PF12854.7 PPR_1 Repeat 2 34 34 29.1 5.6e-07 1 CL0020
Cotton_A_34417_CDS 137 219 136 220 PF02922.18 CBM_48 Domain 2 83 84 72.6 2.5e-20 1 CL0369
Cotton_A_34417_CDS 307 378 295 399 PF00128.24 Alpha-amylase Domain 29 100 337 43.1 4e-11 1 CL0058
Cotton_A_34417_CDS 670 771 669 772 PF02806.18 Alpha-amylase_C Domain 2 95 96 91.7 3e-26 1 CL0369
Cotton_A_22902_CDS 159 213 158 214 PF00046.29 Homeodomain Domain 2 56 57 56.3 2.1e-15 1 CL0123
Cotton_A_22902_CDS 215 249 215 250 PF02183.18 HALZ Coiled-coil 1 42 43 40.1 3.2e-10 1 No_clan
Cotton_A_12555_CDS 7 275 4 277 PF00069.25 Pkinase Domain 5 260 264 139.8 1e-40 1 CL0016
Cotton_A_22193_CDS 177 210 173 211 PF00400.32 WD40 Repeat 5 37 38 18.3 0.0032 1 CL0186
Cotton_A_22193_CDS 222 250 214 250 PF00400.32 WD40 Repeat 8 38 38 15.9 0.017 1 CL0186
Cotton_A_22193_CDS 255 292 254 292 PF00400.32 WD40 Repeat 2 38 38 33.1 6.7e-08 1 CL0186
Cotton_A_22193_CDS 297 334 296 334 PF00400.32 WD40 Repeat 2 38 38 30.2 5.4e-07 1 CL0186
Cotton_A_22193_CDS 340 376 338 376 PF00400.32 WD40 Repeat 3 37 38 20.4 0.0007 1 CL0186
Cotton_A_22193_CDS 389 419 381 420 PF00400.32 WD40 Repeat 8 37 38 22.4 0.00015 1 CL0186
Cotton_A_03589_CDS 1 189 1 190 PF00827.17 Ribosomal_L15e Family 1 190 191 318.1 1.8e-95 1 CL0652
Cotton_A_38336_CDS 97 233 97 233 PF04116.13 FA_hydroxylase Family 1 133 133 90.7 9.5e-26 1 No_clan
Cotton_A_09515_CDS 7 133 7 133 PF02365.15 NAM Family 1 126 126 121.9 3e-35 1 No_clan
Cotton_A_16016_CDS 38 243 38 243 PF00804.25 Syntaxin Domain 1 200 200 238.7 4.5e-71 1 CL0445
Cotton_A_16016_CDS 244 296 244 296 PF05739.19 SNARE Family 1 53 53 67.8 6e-19 1 No_clan
Cotton_A_27681_CDS 42 67 41 69 PF01535.20 PPR Family 2 27 31 12.8 0.11 1 CL0020
Cotton_A_27681_CDS 109 158 109 158 PF13041.6 PPR_2 Repeat 1 50 50 53.1 2.8e-14 1 CL0020
Cotton_A_27681_CDS 183 212 182 212 PF01535.20 PPR Family 2 31 31 18.4 0.0018 1 CL0020
Cotton_A_27681_CDS 214 263 214 263 PF13041.6 PPR_2 Repeat 1 50 50 50.3 2e-13 1 CL0020
Cotton_A_27681_CDS 284 333 284 333 PF13041.6 PPR_2 Repeat 1 50 50 61.6 5.7e-17 1 CL0020
Cotton_A_27681_CDS 350 381 350 382 PF12854.7 PPR_1 Repeat 1 32 34 38.8 5.2e-10 1 CL0020
Cotton_A_27681_CDS 389 438 389 438 PF13041.6 PPR_2 Repeat 1 50 50 62.9 2.2e-17 1 CL0020
Cotton_A_27681_CDS 455 487 455 488 PF12854.7 PPR_1 Repeat 1 33 34 44.1 1.2e-11 1 CL0020
Cotton_A_27681_CDS 494 543 494 543 PF13041.6 PPR_2 Repeat 1 50 50 58.3 6.3e-16 1 CL0020
Cotton_A_27681_CDS 560 592 560 593 PF12854.7 PPR_1 Repeat 1 33 34 46.7 1.8e-12 1 CL0020
Cotton_A_27681_CDS 602 649 600 649 PF13041.6 PPR_2 Repeat 3 50 50 62.4 3.4e-17 1 CL0020
Cotton_A_27681_CDS 674 703 673 703 PF01535.20 PPR Family 2 31 31 12.5 0.13 1 CL0020
Cotton_A_05170_CDS 44 112 44 115 PF00240.23 ubiquitin Domain 1 68 72 39.5 3.6e-10 1 CL0072
Cotton_A_05170_CDS 139 213 138 214 PF02179.16 BAG Family 2 74 75 52.9 3.6e-14 1 No_clan
Cotton_A_18854_CDS 188 344 188 347 PF02731.15 SKIP_SNW Family 1 157 160 233.4 9.8e-70 1 No_clan
Cotton_A_22788_CDS 33 90 33 90 PF08246.12 Inhibitor_I29 Domain 1 58 58 55.4 5.9e-15 1 No_clan
Cotton_A_22788_CDS 119 339 119 339 PF00112.23 Peptidase_C1 Domain 1 218 218 257.5 1.3e-76 1 CL0125
Cotton_A_11391_CDS 87 179 78 180 PF00581.20 Rhodanese Domain 11 106 107 57.0 2.4e-15 1 CL0031
Cotton_A_15347_CDS 23 62 22 63 PF08263.12 LRRNT_2 Family 2 40 41 35.1 1.2e-08 1 No_clan
Cotton_A_15347_CDS 113 154 113 162 PF12799.7 LRR_4 Repeat 1 40 44 27.7 2.6e-06 1 CL0022
Cotton_A_15347_CDS 345 635 341 635 PF07714.17 Pkinase_Tyr Domain 7 259 259 102.8 1.9e-29 1 CL0016
Cotton_A_19579_CDS 32 133 31 133 PF13947.6 GUB_WAK_bind Domain 2 106 106 82.7 2.8e-23 1 No_clan
Cotton_A_19579_CDS 288 329 288 330 PF07645.15 EGF_CA Domain 1 41 42 32.2 8.8e-08 1 CL0001
Cotton_A_19579_CDS 414 682 414 684 PF00069.25 Pkinase Domain 1 260 264 149.3 1.2e-43 1 CL0016
Cotton_A_22379_CDS 33 106 30 107 PF14569.6 zf-UDP Domain 4 77 78 123.0 4e-36 1 CL0229
Cotton_A_22379_CDS 522 974 521 977 PF03552.14 Cellulose_synt Family 263 718 722 639.4 8.9e-192 1 CL0110
Cotton_A_37619_CDS 65 123 64 124 PF00847.20 AP2 Domain 2 53 54 47.1 2.1e-12 1 CL0081
Cotton_A_21974_CDS 14 228 14 229 PF01487.15 DHquinase_I Domain 1 228 229 171.9 2.4e-50 1 CL0036
Cotton_A_21974_CDS 243 323 243 323 PF08501.11 Shikimate_dh_N Domain 1 83 83 79.2 2.1e-22 1 CL0603
Cotton_A_21974_CDS 458 487 458 488 PF18317.1 SDH_C Domain 1 30 31 30.9 1.7e-07 1 No_clan
Cotton_A_12852_CDS 7 160 5 161 PF04970.13 LRAT Domain 3 126 127 68.6 6e-19 1 CL0125
Cotton_A_02546_CDS 24 60 9 64 PF11960.8 DUF3474 Family 92 128 135 30.6 3.2e-07 1 No_clan
Cotton_A_02546_CDS 84 344 83 348 PF00487.24 FA_desaturase Domain 2 248 254 122.8 2e-35 1 No_clan
Cotton_A_20505_CDS 412 658 411 663 PF00069.25 Pkinase Domain 2 238 264 173.7 4.6e-51 1 CL0016
Cotton_A_15085_CDS 5 91 2 92 PF01657.17 Stress-antifung Family 9 94 95 58.3 9.1e-16 1 No_clan
Cotton_A_15085_CDS 107 204 106 205 PF01657.17 Stress-antifung Family 2 94 95 46.6 3.9e-12 1 No_clan
Cotton_A_15085_CDS 291 558 290 560 PF00069.25 Pkinase Domain 2 259 264 166.9 5.7e-49 1 CL0016
Cotton_A_22919_CDS 158 392 147 394 PF00069.25 Pkinase Domain 43 260 264 139.0 1.8e-40 1 CL0016
Cotton_A_23743_CDS 1 72 1 84 PF00332.18 Glyco_hydro_17 Domain 30 102 313 52.6 5.1e-14 1 CL0058
Cotton_A_23743_CDS 86 159 74 159 PF00332.18 Glyco_hydro_17 Domain 145 219 313 55.7 5.8e-15 1 CL0058
Cotton_A_25382_CDS 226 366 210 385 PF01852.19 START Domain 45 185 209 78.6 4.2e-22 1 CL0209
Cotton_A_25382_CDS 506 686 504 687 PF07059.12 DUF1336 Family 25 228 229 193.9 4.2e-57 1 No_clan
Cotton_A_33533_CDS 49 191 49 191 PF00258.25 Flavodoxin_1 Domain 1 143 143 90.2 1.4e-25 1 CL0042
Cotton_A_33533_CDS 324 511 322 513 PF04055.21 Radical_SAM Domain 3 165 167 90.2 1.8e-25 1 CL0036
Cotton_A_33533_CDS 516 579 515 579 PF08608.12 Wyosine_form Family 2 63 63 92.1 2.1e-26 1 No_clan
Cotton_A_31396_CDS 103 524 103 525 PF00854.21 PTR2 Family 1 394 395 310.8 1.2e-92 1 CL0015
Cotton_A_00738_CDS 7 51 6 55 PF00249.31 Myb_DNA-binding Domain 2 42 46 24.5 2.3e-05 1 CL0123
Cotton_A_03639_CDS 459 488 446 488 PF00400.32 WD40 Repeat 9 38 38 18.6 0.0026 1 CL0186
Cotton_A_13175_CDS 106 314 106 314 PF09747.9 DUF2052 Coiled-coil 1 198 198 170.0 6.4e-50 1 No_clan
Cotton_A_23998_CDS 88 208 87 209 PF00917.26 MATH Domain 2 112 113 53.9 1.8e-14 1 CL0389
Cotton_A_22297_CDS 78 145 78 147 PF00076.22 RRM_1 Domain 1 68 70 54.7 6.4e-15 1 CL0221
Cotton_A_22297_CDS 170 238 170 239 PF00076.22 RRM_1 Domain 1 69 70 39.1 4.9e-10 1 CL0221
Cotton_A_21587_CDS 53 94 53 94 PF01476.20 LysM Domain 1 43 44 20.7 0.00031 1 CL0187
Cotton_A_07438_CDS 37 468 36 469 PF01490.18 Aa_trans Family 2 408 409 316.8 1.7e-94 1 CL0062
Cotton_A_17372_CDS 3 113 1 124 PF07851.13 TMPIT Family 3 103 324 32.0 7.3e-08 1 No_clan
Cotton_A_17372_CDS 221 364 217 365 PF07851.13 TMPIT Family 181 323 324 148.8 2.1e-43 1 No_clan
Cotton_A_39871_CDS 111 286 111 286 PF00005.27 ABC_tran Domain 1 137 137 87.2 1.4e-24 1 CL0023
Cotton_A_12633_CDS 37 131 36 132 PF01657.17 Stress-antifung Family 2 94 95 75.5 3.8e-21 1 No_clan
Cotton_A_12633_CDS 177 234 146 234 PF01657.17 Stress-antifung Family 38 94 95 39.5 6.8e-10 1 No_clan
Cotton_A_06365_CDS 219 370 212 370 PF13359.6 DDE_Tnp_4 Domain 18 158 158 60.9 1.1e-16 1 CL0219
Cotton_A_35746_CDS 155 213 153 214 PF00170.21 bZIP_1 Family 5 63 64 42.6 4.8e-11 1 CL0018
Cotton_A_10602_CDS 11 39 9 42 PF12937.7 F-box-like Domain 4 31 48 26.7 3.7e-06 1 CL0271
Cotton_A_10602_CDS 162 180 161 183 PF13516.6 LRR_6 Repeat 2 20 24 11.0 0.37 1 CL0022
Cotton_A_10602_CDS 187 210 186 210 PF13516.6 LRR_6 Repeat 2 24 24 11.8 0.19 1 CL0022
Cotton_A_10602_CDS 316 339 315 339 PF13516.6 LRR_6 Repeat 2 24 24 17.0 0.0043 1 CL0022
Cotton_A_10602_CDS 342 363 341 365 PF13516.6 LRR_6 Repeat 2 22 24 9.1 1.5 1 CL0022
Cotton_A_10602_CDS 445 467 445 469 PF13516.6 LRR_6 Repeat 1 22 24 12.0 0.18 1 CL0022
Cotton_A_10602_CDS 473 494 470 494 PF13516.6 LRR_6 Repeat 4 24 24 17.6 0.0028 1 CL0022
Cotton_A_37569_CDS 1 42 1 49 PF01687.17 Flavokinase Domain 46 83 111 19.8 0.00074 1 No_clan
Cotton_A_37569_CDS 36 139 34 152 PF00293.28 NUDIX Domain 3 115 131 51.8 8.1e-14 1 CL0261
Cotton_A_14525_CDS 44 94 44 95 PF00847.20 AP2 Domain 1 53 54 46.3 3.7e-12 1 CL0081
Cotton_A_19510_CDS 29 411 29 414 PF14778.6 ODR4-like Family 1 367 370 343.8 1.1e-102 1 No_clan
Cotton_A_09772_CDS 145 524 143 524 PF03514.14 GRAS Family 3 374 374 344.7 6e-103 1 CL0063
Cotton_A_15731_CDS 503 547 503 547 PF11331.8 zinc_ribbon_12 Family 1 45 45 66.1 1.7e-18 1 CL0167
Cotton_A_28766_CDS 2 65 2 68 PF00035.26 dsrm Domain 1 64 67 52.6 5.4e-14 1 CL0196
Cotton_A_28766_CDS 127 191 127 193 PF00035.26 dsrm Domain 1 65 67 47.6 2.1e-12 1 CL0196
Cotton_A_28766_CDS 209 273 208 273 PF00035.26 dsrm Domain 2 67 67 50.1 3.5e-13 1 CL0196
Cotton_A_22394_CDS 129 172 128 172 PF13639.6 zf-RING_2 Domain 2 44 44 51.5 9.2e-14 1 CL0229
Cotton_A_09618_CDS 26 135 22 135 PF00164.25 Ribosom_S12_S23 Family 4 114 114 167.5 6.7e-50 1 CL0021
Cotton_A_08152_CDS 183 296 183 298 PF13474.6 SnoaL_3 Domain 1 119 121 80.2 1.4e-22 1 CL0051
Cotton_A_04685_CDS 5 205 5 206 PF02676.14 TYW3 Family 1 212 213 213.3 2.4e-63 1 No_clan
Cotton_A_04685_CDS 340 381 340 383 PF01344.25 Kelch_1 Repeat 1 41 46 31.9 7.3e-08 1 CL0186
Cotton_A_04685_CDS 391 432 391 432 PF01344.25 Kelch_1 Repeat 1 42 46 39.5 3.1e-10 1 CL0186
Cotton_A_04685_CDS 441 479 441 486 PF13964.6 Kelch_6 Repeat 1 41 50 33.1 4.5e-08 1 CL0186
Cotton_A_04685_CDS 779 979 778 980 PF02475.16 Met_10 Family 2 198 199 119.4 1.6e-34 1 CL0063
Cotton_A_19617_CDS 35 96 34 108 PF08240.12 ADH_N Domain 2 64 109 57.6 1e-15 1 CL0296
Cotton_A_20142_CDS 61 134 60 134 PF05899.12 Cupin_3 Domain 2 74 74 104.6 1.6e-30 1 CL0029
Cotton_A_13744_CDS 124 361 124 361 PF04788.12 DUF620 Family 1 243 243 360.5 3.9e-108 1 No_clan
Cotton_A_34892_CDS 143 168 142 169 PF01436.21 NHL Repeat 2 27 28 20.9 0.00026 1 CL0186
Cotton_A_21002_CDS 33 157 32 157 PF02365.15 NAM Family 2 126 126 119.1 2.1e-34 1 No_clan
Cotton_A_30053_CDS 16 224 16 224 PF01991.18 vATP-synt_E Family 1 199 199 243.5 1.2e-72 1 CL0255
Cotton_A_08075_CDS 15 53 14 58 PF12799.7 LRR_4 Repeat 2 39 44 31.9 1.2e-07 1 CL0022
Cotton_A_08075_CDS 208 490 206 495 PF00069.25 Pkinase Domain 3 257 264 153.2 8.6e-45 1 CL0016
Cotton_A_41055_CDS 25 77 25 77 PF04431.13 Pec_lyase_N Family 1 56 56 64.5 7.9e-18 1 No_clan
Cotton_A_41055_CDS 263 332 257 333 PF00544.19 Pec_lyase_C Domain 140 210 211 27.1 2.7e-06 1 CL0268
Cotton_A_13678_CDS 29 169 24 173 PF00407.19 Bet_v_1 Domain 8 147 151 46.2 4.1e-12 1 CL0209
Cotton_A_26912_CDS 422 807 409 808 PF00503.20 G-alpha Domain 20 353 354 198.0 2.5e-58 1 CL0023
Cotton_A_00919_CDS 241 466 240 466 PF00566.18 RabGAP-TBC Family 2 215 215 179.2 8.7e-53 1 No_clan
Cotton_A_22340_CDS 115 193 114 195 PF01336.25 tRNA_anti-codon Domain 2 74 76 39.4 4.5e-10 1 CL0021
Cotton_A_22340_CDS 240 587 240 588 PF00152.20 tRNA-synt_2 Domain 1 313 314 282.4 3.9e-84 1 CL0040
Cotton_A_39948_CDS 107 140 107 153 PF00786.28 PBD Domain 1 35 59 25.4 1.4e-05 1 No_clan
Cotton_A_39948_CDS 170 304 170 310 PF00620.27 RhoGAP Domain 1 145 152 76.6 1.8e-21 1 CL0409
Cotton_A_16844_CDS 63 94 15 95 PF14904.6 FAM86 Family 61 92 93 23.3 5e-05 1 No_clan
Cotton_A_16844_CDS 145 288 136 294 PF10294.9 Methyltransf_16 Family 14 152 174 71.0 1e-19 1 CL0063
Cotton_A_33538_CDS 566 603 566 612 PF02213.16 GYF Domain 2 39 45 45.6 4.1e-12 1 CL0673
Cotton_A_20460_CDS 96 191 96 196 PF03168.13 LEA_2 Domain 1 99 101 44.0 2.5e-11 1 CL0159
Cotton_A_27992_CDS 1725 1754 1725 1756 PF15629.6 Perm-CXXC Family 1 30 32 49.2 4.5e-13 1 No_clan
Cotton_A_27992_CDS 1759 1859 1759 1860 PF15628.6 RRM_DME Family 1 101 102 185.7 1.4e-55 1 No_clan
Cotton_A_23063_CDS 25 312 23 314 PF00248.21 Aldo_ket_red Domain 3 292 294 247.4 1.6e-73 1 No_clan
Cotton_A_16178_CDS 29 56 15 56 PF00400.32 WD40 Repeat 12 38 38 17.9 0.0041 1 CL0186
Cotton_A_16178_CDS 109 146 108 146 PF00400.32 WD40 Repeat 2 38 38 30.0 6.3e-07 1 CL0186
Cotton_A_02604_CDS 56 98 56 98 PF16711.5 SCAB-ABD Domain 1 43 43 82.1 1.9e-23 1 No_clan
Cotton_A_02604_CDS 102 269 102 269 PF16712.5 SCAB_CC Family 1 168 168 264.8 2.8e-79 1 No_clan
Cotton_A_02604_CDS 283 380 283 380 PF16709.5 SCAB-Ig Domain 1 98 98 152.2 3.2e-45 1 CL0159
Cotton_A_02604_CDS 383 490 383 490 PF17684.1 SCAB-PH Domain 1 108 108 188.9 1.9e-56 1 CL0266
Cotton_A_31074_CDS 9 64 2 86 PF13456.6 RVT_3 Domain 36 89 124 36.0 5.1e-09 1 CL0219
Cotton_A_11560_CDS 29 286 26 286 PF07714.17 Pkinase_Tyr Domain 4 259 259 193.5 3.8e-57 1 CL0016
Cotton_A_40069_CDS 24 99 23 99 PF05922.16 Inhibitor_I9 Domain 2 82 82 54.5 1.4e-14 1 CL0570
Cotton_A_38265_CDS 200 269 200 274 PF00076.22 RRM_1 Domain 1 64 70 25.1 1.1e-05 1 CL0221
Cotton_A_32391_CDS 209 370 199 380 PF16499.5 Melibiase_2 Family 121 271 284 37.2 1.7e-09 1 CL0058
Cotton_A_10686_CDS 36 61 36 61 PF07723.13 LRR_2 Repeat 1 26 26 25.5 1.4e-05 1 CL0022
Cotton_A_10686_CDS 231 275 229 275 PF08387.10 FBD Family 3 46 46 42.8 3.4e-11 1 No_clan
Cotton_A_12676_CDS 89 190 88 191 PF00044.24 Gp_dh_N Domain 2 100 101 111.6 1.9e-32 1 CL0063
Cotton_A_12676_CDS 246 403 246 403 PF02800.20 Gp_dh_C Domain 1 158 158 222.9 1.5e-66 1 CL0139
Cotton_A_12676_CDS 434 453 428 453 PF02672.15 CP12 Family 51 70 70 23.2 8.5e-05 1 No_clan
Cotton_A_04675_CDS 113 293 112 293 PF01507.19 PAPS_reduct Family 2 174 174 150.4 4.9e-44 1 CL0039
Cotton_A_04675_CDS 360 454 350 455 PF00085.20 Thioredoxin Domain 13 102 103 48.7 5.8e-13 1 CL0172
Cotton_A_36218_CDS 120 402 120 402 PF00069.25 Pkinase Domain 1 264 264 227.0 2.5e-67 1 CL0016
Cotton_A_17669_CDS 63 272 33 272 PF04720.12 PDDEXK_6 Family 21 221 221 231.6 1e-68 1 No_clan
Cotton_A_19597_CDS 1 31 1 31 PF08263.12 LRRNT_2 Family 9 41 41 25.9 9.2e-06 1 No_clan
Cotton_A_19597_CDS 389 445 388 445 PF13855.6 LRR_8 Repeat 5 61 61 29.2 5.5e-07 1 CL0022
Cotton_A_19597_CDS 529 588 528 588 PF13855.6 LRR_8 Repeat 2 61 61 43.7 1.7e-11 1 CL0022
Cotton_A_19597_CDS 738 796 737 797 PF13855.6 LRR_8 Repeat 2 60 61 32.0 7.8e-08 1 CL0022
Cotton_A_35186_CDS 3 80 2 100 PF03732.17 Retrotrans_gag Family 14 83 96 25.0 1.7e-05 1 CL0523
Cotton_A_21017_CDS 52 91 51 110 PF11820.8 DUF3339 Family 2 41 67 68.7 3.6e-19 1 No_clan
Cotton_A_07993_CDS 247 311 247 312 PF00076.22 RRM_1 Domain 1 69 70 44.1 1.3e-11 1 CL0221
Cotton_A_07993_CDS 332 397 332 397 PF00076.22 RRM_1 Domain 1 70 70 33.7 2.4e-08 1 CL0221
Cotton_A_09211_CDS 29 284 28 285 PF12698.7 ABC2_membrane_3 Family 2 221 345 40.1 2.3e-10 1 CL0181
Cotton_A_09211_CDS 505 648 503 649 PF00005.27 ABC_tran Domain 3 136 137 81.0 1.1e-22 1 CL0023
Cotton_A_15482_CDS 20 77 19 80 PF16200.5 Band_7_C Family 2 60 63 52.8 3e-14 1 No_clan
Cotton_A_20589_CDS 1 95 1 104 PF05695.12 DUF825 Family 565 661 1486 170.6 3e-50 1 No_clan
Cotton_A_13182_CDS 739 869 739 869 PF02732.15 ERCC4 Domain 1 156 156 71.7 7.6e-20 1 CL0236
Cotton_A_32596_CDS 4 100 4 101 PF01133.17 ER Family 1 97 98 142.0 4.8e-42 1 No_clan
Cotton_A_33649_CDS 65 272 62 339 PF07714.17 Pkinase_Tyr Domain 4 208 259 124.9 3.3e-36 1 CL0016
Cotton_A_23558_CDS 16 147 9 148 PF12819.7 Malectin_like Domain 214 335 336 51.1 1.1e-13 1 CL0202
Cotton_A_23558_CDS 229 427 224 499 PF07714.17 Pkinase_Tyr Domain 7 204 259 139.0 1.7e-40 1 CL0016
Cotton_A_08854_CDS 24 91 24 94 PF00240.23 ubiquitin Domain 1 68 72 73.4 9.1e-21 1 CL0072
Cotton_A_08854_CDS 512 548 511 548 PF00627.31 UBA Domain 2 37 37 38.4 8.4e-10 1 CL0214
Cotton_A_31746_CDS 26 83 26 83 PF00662.20 Proton_antipo_N Family 1 58 58 70.2 1.1e-19 1 No_clan
Cotton_A_34201_CDS 45 460 45 461 PF03514.14 GRAS Family 1 373 374 460.3 4.4e-138 1 CL0063
Cotton_A_13838_CDS 73 141 47 142 PF12796.7 Ank_2 Repeat 25 82 83 38.9 9.8e-10 1 CL0465
Cotton_A_13838_CDS 264 284 261 285 PF00642.24 zf-CCCH Family 5 26 27 24.5 1.8e-05 1 CL0537
Cotton_A_29988_CDS 162 209 160 209 PF00010.26 HLH Domain 4 53 53 22.5 8e-05 1 No_clan
Cotton_A_26906_CDS 13 90 13 100 PF00042.22 Globin Domain 1 80 110 51.2 1.6e-13 1 CL0090
Cotton_A_16819_CDS 47 343 15 393 PF05631.14 MFS_5 Family 27 325 354 100.8 7.3e-29 1 CL0015
Cotton_A_24614_CDS 109 451 109 454 PF02401.18 LYTB Family 1 254 264 260.6 1.3e-77 1 No_clan
Cotton_A_23859_CDS 55 256 55 262 PF00282.19 Pyridoxal_deC Domain 1 204 375 135.2 2.2e-39 1 CL0061
Cotton_A_23859_CDS 294 400 292 420 PF00282.19 Pyridoxal_deC Domain 243 350 375 83.4 1.2e-23 1 CL0061
Cotton_A_29149_CDS 96 207 95 213 PF01145.25 Band_7 Family 2 118 178 54.0 2e-14 1 CL0433
Cotton_A_29248_CDS 53 99 52 101 PF13041.6 PPR_2 Repeat 2 48 50 33.1 4.8e-08 1 CL0020
Cotton_A_29248_CDS 128 148 128 149 PF01535.20 PPR Family 4 24 31 12.3 0.16 1 CL0020
Cotton_A_29248_CDS 154 202 153 202 PF13041.6 PPR_2 Repeat 2 50 50 47.0 2.2e-12 1 CL0020
Cotton_A_29248_CDS 229 255 229 256 PF01535.20 PPR Family 4 30 31 18.9 0.0013 1 CL0020
Cotton_A_29248_CDS 285 333 285 334 PF13041.6 PPR_2 Repeat 1 49 50 45.4 6.7e-12 1 CL0020
Cotton_A_29248_CDS 361 386 361 387 PF01535.20 PPR Family 4 29 31 18.8 0.0013 1 CL0020
Cotton_A_29248_CDS 387 433 386 435 PF13041.6 PPR_2 Repeat 2 48 50 37.1 2.7e-09 1 CL0020
Cotton_A_29248_CDS 461 486 460 488 PF01535.20 PPR Family 2 27 31 14.2 0.04 1 CL0020
Cotton_A_29248_CDS 559 616 559 622 PF14432.6 DYW_deaminase Family 1 58 127 38.5 8.9e-10 1 CL0109
Cotton_A_23560_CDS 8 33 7 33 PF08513.11 LisH Domain 2 27 27 34.0 1.9e-08 1 CL0561
Cotton_A_23560_CDS 221 256 219 257 PF00400.32 WD40 Repeat 3 37 38 33.3 5.5e-08 1 CL0186
Cotton_A_23560_CDS 288 315 275 316 PF00400.32 WD40 Repeat 12 37 38 22.6 0.00013 1 CL0186
Cotton_A_23560_CDS 321 357 319 357 PF00400.32 WD40 Repeat 3 38 38 23.6 6.7e-05 1 CL0186
Cotton_A_23560_CDS 403 439 402 440 PF00400.32 WD40 Repeat 2 37 38 31.9 1.6e-07 1 CL0186
Cotton_A_23560_CDS 446 491 444 491 PF00400.32 WD40 Repeat 3 38 38 21.3 0.00034 1 CL0186
Cotton_A_23560_CDS 495 533 495 533 PF00400.32 WD40 Repeat 1 38 38 35.6 1e-08 1 CL0186
Cotton_A_13580_CDS 1 182 1 183 PF13439.6 Glyco_transf_4 Domain 4 168 170 66.0 4e-18 1 CL0113
Cotton_A_13580_CDS 205 351 194 357 PF00534.20 Glycos_transf_1 Family 14 166 172 82.3 2.8e-23 1 CL0113
Cotton_A_25715_CDS 13 123 13 124 PF03195.14 LOB Family 1 98 99 131.1 1.8e-38 1 No_clan
Cotton_A_15457_CDS 136 256 131 259 PF15982.5 TMEM135_C_rich Domain 14 131 134 35.4 1.4e-08 1 No_clan
Cotton_A_10548_CDS 9 158 8 159 PF00179.26 UQ_con Domain 2 139 140 174.0 1.2e-51 1 CL0208
Cotton_A_21722_CDS 24 75 24 75 PF17181.4 EPF Family 1 53 53 63.3 1.5e-17 1 No_clan
Cotton_A_25071_CDS 68 299 66 300 PF00332.18 Glyco_hydro_17 Domain 88 312 313 160.4 7.7e-47 1 CL0058
Cotton_A_25071_CDS 321 390 321 391 PF07983.13 X8 Domain 1 75 76 53.9 2.2e-14 1 No_clan
Cotton_A_35692_CDS 1 85 1 86 PF00141.23 peroxidase Domain 132 228 229 25.2 1.1e-05 1 CL0617
Cotton_A_00973_CDS 47 277 47 277 PF00230.20 MIP Family 1 227 227 274.5 7.2e-82 1 No_clan
Cotton_A_05313_CDS 14 103 14 103 PF00447.17 HSF_DNA-bind Domain 1 96 96 101.2 3.7e-29 1 CL0123
Cotton_A_14676_CDS 49 133 38 133 PF00257.19 Dehydrin Family 76 164 164 93.5 2e-26 1 No_clan
Cotton_A_31334_CDS 68 124 67 125 PF02701.15 zf-Dof Family 2 58 59 112.9 5.6e-33 1 No_clan
Cotton_A_01720_CDS 63 156 63 157 PF03101.15 FAR1 Domain 1 89 90 69.8 2.4e-19 1 CL0274
Cotton_A_01720_CDS 279 370 278 372 PF10551.9 MULE Domain 2 94 96 69.3 2.8e-19 1 CL0219
Cotton_A_01720_CDS 560 588 546 590 PF04434.17 SWIM Domain 10 38 40 29.8 3.3e-07 1 No_clan
Cotton_A_24557_CDS 163 394 156 395 PF00931.22 NB-ARC Domain 11 251 252 147.3 4.2e-43 1 CL0023
Cotton_A_10662_CDS 35 218 33 218 PF00227.26 Proteasome Domain 3 190 190 109.6 1.3e-31 1 CL0052
Cotton_A_05942_CDS 55 77 52 80 PF01535.20 PPR Family 4 26 31 14.7 0.028 1 CL0020
Cotton_A_05942_CDS 87 114 86 114 PF01535.20 PPR Family 3 30 31 17.3 0.0039 1 CL0020
Cotton_A_05942_CDS 157 185 155 185 PF01535.20 PPR Family 3 31 31 29.1 6.8e-07 1 CL0020
Cotton_A_05942_CDS 217 241 217 244 PF01535.20 PPR Family 1 25 31 11.2 0.35 1 CL0020
Cotton_A_05942_CDS 292 319 292 319 PF01535.20 PPR Family 4 31 31 21.3 0.00021 1 CL0020
Cotton_A_05942_CDS 320 347 320 348 PF01535.20 PPR Family 1 28 31 17.4 0.0038 1 CL0020
Cotton_A_05942_CDS 392 415 390 416 PF01535.20 PPR Family 3 26 31 16.2 0.0089 1 CL0020
Cotton_A_05942_CDS 490 618 490 618 PF14432.6 DYW_deaminase Family 1 127 127 119.4 8.7e-35 1 CL0109
Cotton_A_23286_CDS 47 500 47 500 PF00759.19 Glyco_hydro_9 Domain 1 411 411 475.9 1.5e-142 1 CL0059
Cotton_A_08282_CDS 25 120 24 124 PF13881.6 Rad60-SLD_2 Domain 2 97 111 111.9 1.6e-32 1 CL0072
Cotton_A_07988_CDS 134 182 133 182 PF13041.6 PPR_2 Repeat 2 50 50 54.6 9.1e-15 1 CL0020
Cotton_A_07988_CDS 209 229 207 230 PF01535.20 PPR Family 4 24 31 13.2 0.084 1 CL0020
Cotton_A_07988_CDS 235 282 234 283 PF13041.6 PPR_2 Repeat 2 49 50 35.2 1e-08 1 CL0020
Cotton_A_07988_CDS 307 333 305 333 PF01535.20 PPR Family 5 31 31 14.2 0.039 1 CL0020
Cotton_A_07988_CDS 338 461 337 461 PF14432.6 DYW_deaminase Family 2 127 127 107.9 3e-31 1 CL0109
Cotton_A_00917_CDS 186 356 186 357 PF02582.14 DUF155 Family 1 175 176 89.6 2.5e-25 1 No_clan
Cotton_A_37759_CDS 4 124 3 128 PF07887.11 Calmodulin_bind Family 151 273 292 174.1 3.8e-51 1 No_clan
Cotton_A_18679_CDS 33 70 31 73 PF16544.5 STAR_dimer Domain 4 41 53 34.0 1.6e-08 1 No_clan
Cotton_A_24952_CDS 79 356 79 357 PF03644.13 Glyco_hydro_85 Family 1 301 302 315.4 4e-94 1 CL0058
Cotton_A_18619_CDS 70 175 66 188 PF12146.8 Hydrolase_4 Family 6 113 239 29.8 3.3e-07 1 CL0028
Cotton_A_01580_CDS 3 434 1 434 PF00171.22 Aldedh Family 33 462 462 261.9 8.5e-78 1 CL0099
Cotton_A_25611_CDS 106 284 105 284 PF00479.22 G6PD_N Domain 2 177 177 197.7 2.4e-58 1 CL0063
Cotton_A_25611_CDS 287 581 286 582 PF02781.16 G6PD_C Domain 2 289 290 379.1 1.2e-113 1 CL0139
Cotton_A_26597_CDS 379 955 379 956 PF05183.12 RdRP Family 1 585 586 588.3 1.8e-176 1 No_clan
Cotton_A_18692_CDS 19 208 19 209 PF15003.6 HAUS2 Family 1 190 191 300.2 5.6e-90 1 No_clan
Cotton_A_10305_CDS 50 429 49 429 PF00155.21 Aminotran_1_2 Domain 2 363 363 318.8 4.8e-95 1 CL0061
Cotton_A_20734_CDS 42 126 9 127 PF02036.17 SCP2 Family 19 97 101 63.1 2.6e-17 1 CL0311
Cotton_A_37835_CDS 8 727 8 727 PF00223.19 PsaA_PsaB Family 1 718 718 1140.6 0 1 No_clan
Cotton_A_31879_CDS 30 189 29 189 PF00413.24 Peptidase_M10 Domain 2 158 158 174.7 1.2e-51 1 CL0126
Cotton_A_17506_CDS 11 88 10 112 PF14226.6 DIOX_N Family 2 76 118 29.8 8.3e-07 1 CL0029
Cotton_A_17506_CDS 159 253 151 254 PF03171.20 2OG-FeII_Oxy Domain 7 100 101 74.3 8.8e-21 1 CL0029
Cotton_A_38392_CDS 10 78 9 79 PF00076.22 RRM_1 Domain 2 69 70 75.7 1.8e-21 1 CL0221
Cotton_A_17213_CDS 52 231 52 232 PF00350.23 Dynamin_N Domain 1 167 168 185.1 1e-54 1 CL0023
Cotton_A_17213_CDS 241 525 241 527 PF01031.20 Dynamin_M Family 1 283 285 340.6 6.3e-102 1 No_clan
Cotton_A_17213_CDS 646 735 645 736 PF02212.18 GED Family 2 91 92 96.1 1.1e-27 1 No_clan
Cotton_A_37034_CDS 34 60 21 64 PF02705.16 K_trans Family 88 114 534 26.2 2.7e-06 1 CL0062
Cotton_A_04443_CDS 6 42 5 47 PF14555.6 UBA_4 Domain 2 37 43 45.3 5.7e-12 1 CL0214
Cotton_A_04443_CDS 378 457 377 458 PF00789.20 UBX Domain 2 80 81 67.5 9.1e-19 1 CL0072
Cotton_A_01858_CDS 31 191 31 191 PF01554.18 MatE Family 1 161 161 117.3 4.9e-34 1 CL0222
Cotton_A_01858_CDS 252 413 252 414 PF01554.18 MatE Family 1 159 161 116.7 7.8e-34 1 CL0222
Cotton_A_24946_CDS 15 64 14 65 PF00847.20 AP2 Domain 2 53 54 51.6 8.3e-14 1 CL0081
Cotton_A_21245_CDS 1 107 1 108 PF00752.17 XPG_N Family 1 100 101 105.0 2.4e-30 1 CL0280
Cotton_A_21245_CDS 147 174 147 175 PF00867.18 XPG_I Family 1 28 94 35.6 8.5e-09 1 CL0464
Cotton_A_28721_CDS 60 298 59 341 PF02450.15 LCAT Family 2 222 392 152.6 1.7e-44 1 CL0028
Cotton_A_28721_CDS 398 557 360 559 PF02450.15 LCAT Family 251 389 392 64.4 1.1e-17 1 CL0028
Cotton_A_38847_CDS 101 158 101 173 PF14543.6 TAXi_N Domain 1 58 178 49.1 7.4e-13 1 CL0129
Cotton_A_38847_CDS 378 441 358 442 PF14541.6 TAXi_C Domain 91 160 161 30.6 2.5e-07 1 CL0129
Cotton_A_25470_CDS 16 241 14 259 PF00378.20 ECH_1 Domain 3 231 251 182.1 1.1e-53 1 CL0127
Cotton_A_29155_CDS 147 302 143 304 PF09419.10 PGP_phosphatase Family 4 166 168 143.2 5.8e-42 1 CL0137
Cotton_A_38381_CDS 1 425 1 430 PF02458.15 Transferase Family 1 425 434 196.1 8e-58 1 CL0149
Cotton_A_22888_CDS 42 59 39 59 PF14608.6 zf-CCCH_2 Domain 3 17 18 11.1 0.43 1 CL0537
Cotton_A_22888_CDS 100 125 100 125 PF00642.24 zf-CCCH Family 2 27 27 24.5 1.8e-05 1 CL0537
Cotton_A_22888_CDS 171 234 170 234 PF00013.29 KH_1 Domain 2 66 66 45.0 7e-12 1 CL0007
Cotton_A_22888_CDS 262 286 262 287 PF00642.24 zf-CCCH Family 1 26 27 37.8 1.2e-09 1 CL0537
Cotton_A_32642_CDS 38 112 27 117 PF02362.21 B3 Family 17 96 101 44.4 1.1e-11 1 CL0405
Cotton_A_32642_CDS 276 367 273 368 PF02362.21 B3 Family 4 100 101 65.7 2.6e-18 1 CL0405
Cotton_A_10136_CDS 110 224 110 225 PF12859.7 ANAPC1 Family 1 129 130 55.7 7e-15 1 No_clan
Cotton_A_10136_CDS 1617 1783 1617 1783 PF18122.1 APC1_C Domain 1 167 167 115.6 2.1e-33 1 No_clan
Cotton_A_15966_CDS 17 164 4 167 PF06650.12 SHR-BD Family 64 209 271 77.7 9.4e-22 1 No_clan
Cotton_A_24324_CDS 1 219 1 220 PF02586.14 SRAP Family 1 218 219 232.2 4.8e-69 1 No_clan
Cotton_A_06206_CDS 165 455 156 474 PF00854.21 PTR2 Family 87 377 395 77.3 1e-21 1 CL0015
Cotton_A_35132_CDS 432 698 431 700 PF08172.12 CASP_C Family 2 250 252 191.4 1.6e-56 1 No_clan
Cotton_A_02379_CDS 36 692 35 694 PF03169.15 OPT Family 2 614 616 564.8 2.5e-169 1 No_clan
Cotton_A_09980_CDS 2 69 1 73 PF03514.14 GRAS Family 205 274 374 56.0 3.2e-15 1 CL0063
Cotton_A_03215_CDS 31 237 30 237 PF01027.20 Bax1-I Family 2 207 207 150.3 6.4e-44 1 CL0453
Cotton_A_04659_CDS 213 556 213 556 PF10250.9 O-FucT Family 1 336 336 218.0 2.8e-64 1 CL0113
Cotton_A_38533_CDS 71 124 37 124 PF14223.6 Retrotran_gag_2 Family 51 104 138 27.3 2.4e-06 1 CL0523
Cotton_A_09934_CDS 153 207 152 208 PF08648.12 SNRNP27 Family 2 55 56 88.5 2.1e-25 1 No_clan
Cotton_A_05993_CDS 288 944 288 956 PF00176.23 SNF2_N Family 1 312 350 325.3 3.5e-97 1 CL0023
Cotton_A_05993_CDS 550 593 550 594 PF07496.15 zf-CW Domain 1 47 48 52.3 4.2e-14 1 No_clan
Cotton_A_05993_CDS 1174 1270 1161 1270 PF00271.31 Helicase_C Family 16 111 111 32.3 1e-07 1 CL0023
Cotton_A_05993_CDS 1476 1526 1476 1526 PF00327.20 Ribosomal_L30 Domain 1 51 51 55.9 2.9e-15 1 No_clan
Cotton_A_04803_CDS 29 353 27 378 PF02606.14 LpxK Family 3 282 327 211.3 1.9e-62 1 CL0023
Cotton_A_04457_CDS 202 251 200 251 PF00847.20 AP2 Domain 3 54 54 49.1 4.9e-13 1 CL0081
Cotton_A_32244_CDS 51 376 51 376 PF00009.27 GTP_EFTU Domain 1 194 194 217.9 8.6e-65 1 CL0023
Cotton_A_32244_CDS 428 501 426 502 PF03144.25 GTP_EFTU_D2 Domain 4 73 74 45.6 6.8e-12 1 CL0575
Cotton_A_32244_CDS 521 583 519 590 PF14492.6 EFG_II Domain 4 67 75 45.6 5.6e-12 1 CL0437
Cotton_A_32244_CDS 645 756 639 756 PF03764.18 EFG_IV Domain 11 121 121 106.2 9e-31 1 CL0329
Cotton_A_32244_CDS 758 844 758 847 PF00679.24 EFG_C Domain 1 86 89 74.6 4.7e-21 1 CL0437
Cotton_A_27766_CDS 6 54 6 54 PF16891.5 STPPase_N Family 1 48 48 69.8 1.9e-19 1 No_clan
Cotton_A_27766_CDS 56 247 55 250 PF00149.28 Metallophos Domain 2 201 204 133.5 1.4e-38 1 CL0163
Cotton_A_24843_CDS 20 67 18 68 PF13920.6 zf-C3HC4_3 Domain 3 48 50 36.0 4.5e-09 1 CL0229
Cotton_A_26951_CDS 60 212 60 213 PF02605.15 PsaL Family 1 149 150 195.2 4.3e-58 1 No_clan
Cotton_A_05303_CDS 5 145 5 150 PF01217.20 Clat_adaptor_s Domain 1 137 142 73.5 1.6e-20 1 CL0212
Cotton_A_09397_CDS 1 132 1 133 PF00235.19 Profilin Domain 1 126 127 145.8 7.4e-43 1 CL0431
Cotton_A_30899_CDS 25 62 25 63 PF08263.12 LRRNT_2 Family 1 40 41 37.2 2.6e-09 1 No_clan
Cotton_A_30899_CDS 367 637 364 640 PF00069.25 Pkinase Domain 5 259 264 113.6 9.6e-33 1 CL0016
Cotton_A_06020_CDS 66 150 66 151 PF03330.18 DPBB_1 Domain 1 82 83 78.8 2.8e-22 1 CL0199
Cotton_A_06020_CDS 162 239 162 239 PF01357.21 Pollen_allerg_1 Domain 1 80 80 104.0 3.2e-30 1 CL0159
Cotton_A_27067_CDS 1 318 1 318 PF01263.20 Aldose_epim Family 11 301 301 270.3 2e-80 1 CL0103
Cotton_A_33921_CDS 32 395 32 396 PF12819.7 Malectin_like Domain 1 335 336 146.9 7.9e-43 1 CL0202
Cotton_A_33921_CDS 496 761 492 762 PF07714.17 Pkinase_Tyr Domain 7 258 259 167.9 2.5e-49 1 CL0016
Cotton_A_24073_CDS 54 159 54 159 PF13085.6 Fer2_3 Domain 1 109 109 115.8 8.7e-34 1 CL0486
Cotton_A_24073_CDS 196 269 196 269 PF13534.6 Fer4_17 Domain 1 61 61 36.3 5.9e-09 1 CL0344
Cotton_A_10300_CDS 7 250 4 251 PF00335.20 Tetraspanin Family 4 228 229 104.3 7.6e-30 1 CL0347
Cotton_A_25728_CDS 83 330 72 330 PF07714.17 Pkinase_Tyr Domain 30 259 259 99.2 2.2e-28 1 CL0016
Cotton_A_38464_CDS 41 280 41 281 PF07250.11 Glyoxal_oxid_N Family 1 239 240 367.7 2e-110 1 No_clan
Cotton_A_00764_CDS 20 69 19 69 PF00327.20 Ribosomal_L30 Domain 2 51 51 61.6 4.8e-17 1 No_clan
Cotton_A_15460_CDS 44 135 41 137 PF01490.18 Aa_trans Family 4 99 409 63.0 2e-17 1 CL0062
Cotton_A_12826_CDS 61 105 61 105 PF03107.16 C1_2 Domain 1 47 47 32.2 9.9e-08 1 CL0006
Cotton_A_18918_CDS 60 155 60 174 PF00732.19 GMC_oxred_N Domain 1 100 296 39.3 4.8e-10 1 CL0063
Cotton_A_18918_CDS 223 333 182 334 PF00732.19 GMC_oxred_N Domain 191 295 296 73.2 2.2e-20 1 CL0063
Cotton_A_18918_CDS 429 575 429 577 PF05199.13 GMC_oxred_C Domain 1 142 144 91.2 8.7e-26 1 No_clan
Cotton_A_03115_CDS 19 134 18 135 PF14226.6 DIOX_N Family 2 117 118 122.2 1.9e-35 1 CL0029
Cotton_A_03115_CDS 188 288 183 288 PF03171.20 2OG-FeII_Oxy Domain 6 101 101 83.8 9.6e-24 1 CL0029
Cotton_A_32511_CDS 2 110 1 127 PF00790.19 VHS Domain 7 124 141 83.5 1.2e-23 1 CL0009
Cotton_A_32511_CDS 173 245 171 247 PF03127.14 GAT Domain 3 75 77 59.7 2.5e-16 1 No_clan
Cotton_A_06875_CDS 175 295 162 297 PF01553.21 Acyltransferase Family 12 133 135 62.0 4.3e-17 1 CL0228
Cotton_A_17776_CDS 82 130 82 131 PF13041.6 PPR_2 Repeat 1 49 50 40.1 3e-10 1 CL0020
Cotton_A_17776_CDS 184 230 183 231 PF13041.6 PPR_2 Repeat 2 48 50 37.9 1.5e-09 1 CL0020
Cotton_A_17776_CDS 288 316 286 316 PF01535.20 PPR Family 3 31 31 18.0 0.0024 1 CL0020
Cotton_A_17776_CDS 385 432 385 433 PF13041.6 PPR_2 Repeat 1 48 50 41.7 9.9e-11 1 CL0020
Cotton_A_17776_CDS 461 486 461 487 PF01535.20 PPR Family 4 29 31 9.5 1.2 1 CL0020
Cotton_A_17776_CDS 587 634 587 635 PF13041.6 PPR_2 Repeat 1 48 50 38.0 1.4e-09 1 CL0020
Cotton_A_17776_CDS 663 686 661 687 PF01535.20 PPR Family 3 26 31 10.5 0.6 1 CL0020
Cotton_A_17776_CDS 764 873 761 873 PF14432.6 DYW_deaminase Family 4 127 127 79.5 1.9e-22 1 CL0109
Cotton_A_00962_CDS 41 261 29 271 PF00139.19 Lectin_legB Domain 8 237 249 140.7 5.5e-41 1 CL0004
Cotton_A_05367_CDS 45 194 45 210 PF00225.23 Kinesin Domain 1 149 333 68.4 5e-19 1 CL0023
Cotton_A_16447_CDS 37 150 36 151 PF08240.12 ADH_N Domain 2 108 109 93.3 7.8e-27 1 CL0296
Cotton_A_16447_CDS 194 304 194 309 PF00107.26 ADH_zinc_N Family 1 115 130 69.2 3.1e-19 1 CL0063
Cotton_A_14886_CDS 5 445 4 445 PF02458.15 Transferase Family 2 434 434 284.5 1.2e-84 1 CL0149
Cotton_A_20847_CDS 4 58 1 77 PF11568.8 Med29 Family 12 65 139 25.7 1.1e-05 1 No_clan
Cotton_A_21094_CDS 25 582 25 584 PF01602.20 Adaptin_N Family 1 522 524 380.8 9.5e-114 1 CL0020
Cotton_A_21094_CDS 760 856 759 862 PF02883.20 Alpha_adaptinC2 Domain 2 103 111 44.7 1.4e-11 1 CL0159
Cotton_A_21094_CDS 868 976 868 978 PF02296.16 Alpha_adaptin_C Family 1 111 113 56.8 2.2e-15 1 CL0545
Cotton_A_29338_CDS 6 242 6 303 PF05368.13 NmrA Family 1 228 233 207.8 1.7e-61 1 CL0063
Cotton_A_31504_CDS 471 611 471 612 PF00004.29 AAA Domain 1 131 132 141.9 1.5e-41 1 CL0023
Cotton_A_31504_CDS 634 677 634 678 PF17862.1 AAA_lid_3 Domain 1 44 45 29.4 5.2e-07 1 CL0671
Cotton_A_31504_CDS 706 806 698 824 PF01434.18 Peptidase_M41 Domain 15 107 191 40.5 2.5e-10 1 CL0126
Cotton_A_12450_CDS 144 195 143 195 PF11250.8 FAF Family 2 54 54 72.2 3e-20 1 No_clan
Cotton_A_30211_CDS 140 181 139 182 PF13639.6 zf-RING_2 Domain 2 43 44 39.2 6.5e-10 1 CL0229
Cotton_A_12272_CDS 273 313 273 313 PF00514.23 Arm Repeat 1 41 41 23.6 3.7e-05 1 CL0020
Cotton_A_12209_CDS 35 195 35 195 PF01554.18 MatE Family 1 161 161 95.7 2.3e-27 1 CL0222
Cotton_A_12209_CDS 256 418 256 419 PF01554.18 MatE Family 1 160 161 101.0 5.2e-29 1 CL0222
Cotton_A_08997_CDS 39 303 39 303 PF16499.5 Melibiase_2 Family 1 284 284 262.9 3e-78 1 CL0058
Cotton_A_08997_CDS 316 370 315 385 PF17801.1 Melibiase_C Domain 2 52 71 35.1 1.1e-08 1 CL0369
Cotton_A_08997_CDS 407 681 406 681 PF00664.23 ABC_membrane Family 2 274 274 155.7 1.8e-45 1 CL0241
Cotton_A_08997_CDS 747 896 747 896 PF00005.27 ABC_tran Domain 1 137 137 119.8 1.1e-34 1 CL0023
Cotton_A_08997_CDS 1046 1300 1039 1312 PF00664.23 ABC_membrane Family 6 262 274 160.6 6e-47 1 CL0241
Cotton_A_08997_CDS 1379 1528 1379 1528 PF00005.27 ABC_tran Domain 1 137 137 124.9 3e-36 1 CL0023
Cotton_A_05375_CDS 19 312 6 313 PF00389.30 2-Hacid_dh Domain 14 133 134 82.1 2.7e-23 1 CL0325
Cotton_A_05375_CDS 109 281 109 281 PF02826.19 2-Hacid_dh_C Domain 1 178 178 179.1 5e-53 1 CL0063
Cotton_A_40021_CDS 83 594 83 594 PF03141.16 Methyltransf_29 Family 1 506 506 755.0 3.3e-227 1 CL0063
Cotton_A_28341_CDS 372 508 371 510 PF01764.25 Lipase_3 Family 2 140 142 89.0 2.4e-25 1 CL0028
Cotton_A_30427_CDS 48 193 47 196 PF01569.21 PAP2 Family 2 133 136 113.9 4.6e-33 1 CL0525
Cotton_A_09674_CDS 125 244 125 245 PF03109.16 ABC1 Family 1 118 119 101.6 3e-29 1 CL0016
Cotton_A_23629_CDS 8 57 8 57 PF13041.6 PPR_2 Repeat 1 50 50 64.0 1e-17 1 CL0020
Cotton_A_30673_CDS 71 148 70 148 PF13510.6 Fer2_4 Domain 2 82 82 65.2 4.1e-18 1 CL0486
Cotton_A_30673_CDS 154 191 154 193 PF10588.9 NADH-G_4Fe-4S_3 Domain 1 38 40 56.6 1.3e-15 1 No_clan
Cotton_A_30673_CDS 342 661 342 662 PF00384.22 Molybdopterin Family 1 431 432 241.9 1.2e-71 1 No_clan
Cotton_A_30673_CDS 704 737 691 737 PF09326.11 NADH_dhqG_C Family 18 51 51 43.9 2.8e-11 1 No_clan
Cotton_A_36141_CDS 11 37 11 37 PF13961.6 DUF4219 Domain 1 27 27 36.3 3.1e-09 1 CL0523
Cotton_A_18607_CDS 2 257 1 257 PF05910.12 DUF868 Family 8 279 279 320.3 1.2e-95 1 No_clan
Cotton_A_06818_CDS 142 192 141 193 PF01805.20 Surp Family 2 52 53 47.8 1.1e-12 1 No_clan
Cotton_A_06818_CDS 364 407 363 408 PF01585.23 G-patch Family 2 44 45 53.7 1.4e-14 1 CL0449
Cotton_A_28670_CDS 84 239 81 240 PF03547.18 Mem_trans Family 106 253 387 33.9 1.1e-08 1 CL0064
Cotton_A_38453_CDS 51 88 50 91 PF00646.33 F-box Domain 2 39 48 21.7 0.00013 1 CL0271
Cotton_A_38453_CDS 134 160 126 160 PF08238.12 Sel1 Repeat 14 38 38 13.9 0.069 1 CL0020
Cotton_A_38453_CDS 162 194 161 194 PF08238.12 Sel1 Repeat 2 38 38 14.0 0.062 1 CL0020
Cotton_A_38453_CDS 196 230 195 230 PF08238.12 Sel1 Repeat 2 38 38 36.6 5e-09 1 CL0020
Cotton_A_38453_CDS 232 266 231 266 PF08238.12 Sel1 Repeat 2 38 38 28.0 2.4e-06 1 CL0020
Cotton_A_22629_CDS 17 53 15 62 PF02892.15 zf-BED Domain 3 41 44 31.8 1.1e-07 1 CL0361
Cotton_A_22629_CDS 141 177 139 186 PF02892.15 zf-BED Domain 3 41 44 33.0 4.5e-08 1 CL0361
Cotton_A_22629_CDS 354 505 354 505 PF04937.15 DUF659 Family 1 152 152 196.8 1.7e-58 1 No_clan
Cotton_A_22629_CDS 725 795 713 795 PF05699.14 Dimer_Tnp_hAT Domain 16 86 86 43.7 1.8e-11 1 No_clan
Cotton_A_35650_CDS 45 100 44 102 PF02701.15 zf-Dof Family 2 57 59 108.9 9.9e-32 1 No_clan
Cotton_A_18644_CDS 445 655 418 656 PF07817.13 GLE1 Family 22 250 251 163.9 3.8e-48 1 No_clan
Cotton_A_27815_CDS 1 212 1 212 PF01063.19 Aminotran_4 Domain 23 223 223 128.7 3e-37 1 No_clan
Cotton_A_20763_CDS 5 48 4 51 PF00646.33 F-box Domain 2 45 48 31.2 1.5e-07 1 CL0271
Cotton_A_04004_CDS 14 128 8 130 PF00141.23 peroxidase Domain 31 143 229 98.6 4.1e-28 1 CL0617
Cotton_A_14290_CDS 703 820 703 821 PF13355.6 DUF4101 Family 1 116 117 94.3 6.3e-27 1 No_clan
Cotton_A_36585_CDS 41 138 41 138 PF04725.12 PsbR Family 1 98 98 168.3 3.6e-50 1 No_clan
Cotton_A_03008_CDS 62 134 61 135 PF01929.17 Ribosomal_L14e Family 2 74 75 91.1 4.8e-26 1 CL0107
Cotton_A_27593_CDS 183 326 183 330 PF00620.27 RhoGAP Domain 1 146 152 96.2 1.6e-27 1 CL0409
Cotton_A_27593_CDS 614 694 613 694 PF14389.6 Lzipper-MIP1 Family 2 84 84 56.5 2.5e-15 1 No_clan
Cotton_A_35433_CDS 173 293 106 307 PF00201.18 UDPGT Family 274 379 499 73.9 1.1e-20 1 CL0113
Cotton_A_00990_CDS 116 169 115 169 PF14416.6 PMR5N Domain 2 53 53 78.3 3.9e-22 1 No_clan
Cotton_A_00990_CDS 170 458 170 459 PF13839.6 PC-Esterase Family 1 282 283 319.3 2.8e-95 1 CL0264
Cotton_A_13559_CDS 32 396 25 429 PF02458.15 Transferase Family 23 407 434 132.1 2.1e-38 1 CL0149
Cotton_A_03701_CDS 102 280 101 280 PF00479.22 G6PD_N Domain 2 177 177 195.7 9.8e-58 1 CL0063
Cotton_A_03701_CDS 283 577 282 578 PF02781.16 G6PD_C Domain 2 289 290 372.2 1.5e-111 1 CL0139
Cotton_A_32445_CDS 13 124 1 124 PF00257.19 Dehydrin Family 50 164 164 62.9 5.1e-17 1 No_clan
Cotton_A_37821_CDS 42 85 39 97 PF03321.13 GH3 Family 27 71 527 31.3 1e-07 1 CL0378
Cotton_A_36221_CDS 65 306 64 306 PF01633.20 Choline_kinase Family 3 213 213 208.6 7.9e-62 1 CL0016
Cotton_A_32833_CDS 343 495 342 498 PF02453.17 Reticulon Family 2 153 157 82.7 2.7e-23 1 CL0484
Cotton_A_39612_CDS 44 314 44 316 PF00069.25 Pkinase Domain 1 260 264 149.0 1.6e-43 1 CL0016
Cotton_A_03120_CDS 1 131 1 131 PF00235.19 Profilin Domain 1 127 127 150.5 2.6e-44 1 CL0431
Cotton_A_26436_CDS 89 395 89 395 PF05623.12 DUF789 Family 1 294 294 329.8 1.9e-98 1 No_clan
Cotton_A_36377_CDS 17 92 16 96 PF07732.15 Cu-oxidase_3 Domain 2 79 119 81.9 3.5e-23 1 CL0026
Cotton_A_29674_CDS 79 161 74 165 PF00085.20 Thioredoxin Domain 8 97 103 45.9 4.5e-12 1 CL0172
Cotton_A_24387_CDS 134 248 133 249 PF03479.15 DUF296 Domain 2 106 107 103.8 6e-30 1 CL0615
Cotton_A_21838_CDS 37 165 37 178 PF00781.24 DAGK_cat Family 1 116 126 88.1 3.5e-25 1 CL0240
Cotton_A_21838_CDS 230 404 229 404 PF00609.19 DAGK_acc Family 2 160 160 134.2 4.9e-39 1 No_clan
Cotton_A_33185_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 47.3 1.7e-12 1 CL0123
Cotton_A_33185_CDS 68 111 67 112 PF00249.31 Myb_DNA-binding Domain 2 45 46 51.9 6.1e-14 1 CL0123
Cotton_A_07216_CDS 84 200 57 232 PF01925.19 TauE Family 4 111 236 45.5 6.9e-12 1 CL0292
Cotton_A_07216_CDS 286 445 250 447 PF01925.19 TauE Family 91 234 236 45.7 5.8e-12 1 CL0292
Cotton_A_31572_CDS 102 269 94 272 PF13489.6 Methyltransf_23 Domain 9 162 165 74.4 8.9e-21 1 CL0063
Cotton_A_20219_CDS 50 109 48 111 PF13499.6 EF-hand_7 Domain 3 68 71 55.8 4.5e-15 1 CL0220
Cotton_A_20219_CDS 122 184 121 185 PF13499.6 EF-hand_7 Domain 2 70 71 45.3 8.7e-12 1 CL0220
Cotton_A_08273_CDS 145 247 145 248 PF02362.21 B3 Family 1 100 101 71.2 5.1e-20 1 CL0405
Cotton_A_08273_CDS 272 354 272 354 PF06507.13 Auxin_resp Family 1 83 83 104.5 2.7e-30 1 No_clan
Cotton_A_04635_CDS 31 366 30 377 PF00083.24 Sugar_tr Family 2 341 452 301.4 1.1e-89 1 CL0015
Cotton_A_04635_CDS 450 555 424 556 PF00083.24 Sugar_tr Family 346 451 452 92.9 1.9e-26 1 CL0015
Cotton_A_24840_CDS 340 402 242 440 PF00201.18 UDPGT Family 324 382 499 65.2 4.8e-18 1 CL0113
Cotton_A_01992_CDS 13 90 11 90 PF00181.23 Ribosomal_L2 Domain 3 77 77 60.5 1.1e-16 1 CL0021
Cotton_A_01992_CDS 98 230 97 234 PF03947.18 Ribosomal_L2_C Domain 2 121 126 156.6 3.2e-46 1 CL0107
Cotton_A_28635_CDS 11 171 10 171 PF14215.6 bHLH-MYC_N Family 2 175 175 124.4 5.9e-36 1 CL0161
Cotton_A_34015_CDS 12 168 12 173 PF00071.22 Ras Domain 1 157 162 185.8 4.2e-55 1 CL0023
Cotton_A_08859_CDS 228 317 222 320 PF01554.18 MatE Family 71 158 161 37.5 1.7e-09 1 CL0222
Cotton_A_02949_CDS 47 352 45 352 PF02535.22 Zip Family 3 333 333 251.1 1.6e-74 1 CL0184
Cotton_A_28503_CDS 9 214 4 237 PF00931.22 NB-ARC Domain 12 222 252 181.8 1.3e-53 1 CL0023
Cotton_A_20033_CDS 76 177 74 178 PF03754.13 DUF313 Family 4 112 113 71.2 7.7e-20 1 CL0405
Cotton_A_22647_CDS 18 115 18 115 PF15699.5 NPR1_interact Family 1 109 109 64.1 1.6e-17 1 No_clan
Cotton_A_19860_CDS 35 143 35 146 PF00072.24 Response_reg Domain 1 109 112 78.2 4.8e-22 1 CL0304
Cotton_A_19860_CDS 215 265 215 265 PF00249.31 Myb_DNA-binding Domain 1 46 46 32.5 7.1e-08 1 CL0123
Cotton_A_07959_CDS 106 130 106 130 PF00096.26 zf-C2H2 Domain 1 23 23 16.2 0.01 1 CL0361
Cotton_A_23815_CDS 46 139 46 139 PF13905.6 Thioredoxin_8 Domain 1 95 95 97.3 4.8e-28 1 CL0172
Cotton_A_23815_CDS 206 297 206 298 PF13905.6 Thioredoxin_8 Domain 1 94 95 73.2 1.6e-20 1 CL0172
Cotton_A_23815_CDS 365 457 365 458 PF13905.6 Thioredoxin_8 Domain 1 94 95 99.4 1.1e-28 1 CL0172
Cotton_A_23815_CDS 504 546 503 546 PF03107.16 C1_2 Domain 2 47 47 36.1 5.8e-09 1 CL0006
Cotton_A_27225_CDS 38 209 38 209 PF03152.14 UFD1 Family 1 173 173 270.3 4.8e-81 1 CL0402
Cotton_A_02470_CDS 145 213 145 216 PF14360.6 PAP2_C Domain 1 71 74 81.1 6.3e-23 1 CL0525
Cotton_A_17604_CDS 61 188 61 188 PF04749.17 PLAC8 Family 1 99 99 72.4 4.7e-20 1 No_clan
Cotton_A_02091_CDS 236 290 236 290 PF03106.15 WRKY Domain 1 59 59 68.7 3.7e-19 1 CL0274
Cotton_A_12274_CDS 27 432 26 434 PF00860.20 Xan_ur_permease Family 2 387 389 229.2 6.7e-68 1 CL0062
Cotton_A_30403_CDS 72 347 72 347 PF00154.21 RecA Family 1 263 263 381.2 2.6e-114 1 CL0023
Cotton_A_29822_CDS 145 307 145 308 PF14543.6 TAXi_N Domain 1 177 178 174.0 3.5e-51 1 CL0129
Cotton_A_29822_CDS 329 480 329 481 PF14541.6 TAXi_C Domain 1 160 161 104.6 4.3e-30 1 CL0129
Cotton_A_28571_CDS 374 428 373 429 PF05383.17 La Domain 2 58 59 75.1 3.2e-21 1 CL0123
Cotton_A_37797_CDS 45 184 45 190 PF00069.25 Pkinase Domain 1 131 264 73.3 2e-20 1 CL0016
Cotton_A_37797_CDS 314 453 297 453 PF00069.25 Pkinase Domain 160 264 264 59.4 3.5e-16 1 CL0016
Cotton_A_24827_CDS 108 410 106 411 PF06012.12 DUF908 Family 4 357 358 107.8 7.7e-31 1 No_clan
Cotton_A_24827_CDS 473 809 472 811 PF06025.12 DUF913 Family 3 364 368 221.8 1.3e-65 1 No_clan
Cotton_A_24827_CDS 1309 1346 1309 1346 PF00627.31 UBA Domain 1 37 37 36.0 4.5e-09 1 CL0214
Cotton_A_24827_CDS 2594 2620 2589 2622 PF14377.6 UBM Repeat 6 33 35 33.1 2.4e-08 1 No_clan
Cotton_A_24827_CDS 2632 2658 2627 2660 PF14377.6 UBM Repeat 6 33 35 42.6 2.6e-11 1 No_clan
Cotton_A_24827_CDS 2667 2698 2665 2699 PF14377.6 UBM Repeat 3 34 35 27.3 1.7e-06 1 No_clan
Cotton_A_24584_CDS 2 116 1 117 PF03140.15 DUF247 Family 280 396 397 106.0 2.5e-30 1 No_clan
Cotton_A_21797_CDS 38 72 38 73 PF00320.27 GATA Domain 1 35 36 60.2 1e-16 1 CL0167
Cotton_A_32519_CDS 4 85 2 86 PF00276.20 Ribosomal_L23 Family 3 84 86 68.0 6.8e-19 1 No_clan
Cotton_A_05274_CDS 12 171 12 173 PF00071.22 Ras Domain 1 160 162 195.9 3.2e-58 1 CL0023
Cotton_A_15590_CDS 19 115 15 118 PF00085.20 Thioredoxin Domain 5 100 103 68.7 3.5e-19 1 CL0172
Cotton_A_27850_CDS 15 500 13 504 PF00743.19 FMO-like Family 3 443 532 129.1 1.7e-37 1 CL0063
Cotton_A_30539_CDS 7 114 7 127 PF00067.22 p450 Domain 1 112 463 56.0 2.9e-15 1 No_clan
Cotton_A_30539_CDS 137 421 125 427 PF00067.22 p450 Domain 173 456 463 217.7 2.6e-64 1 No_clan
Cotton_A_12047_CDS 387 682 387 683 PF00773.19 RNB Domain 1 325 326 237.2 2.8e-70 1 No_clan
Cotton_A_30412_CDS 11 70 11 70 PF02704.14 GASA Family 1 60 60 75.2 3.2e-21 1 No_clan
Cotton_A_08678_CDS 19 367 14 367 PF00225.23 Kinesin Domain 3 333 333 346.3 1.5e-103 1 CL0023
Cotton_A_27912_CDS 4 103 1 104 PF14111.6 DUF4283 Domain 12 111 145 88.3 3.3e-25 1 No_clan
Cotton_A_36570_CDS 28 143 15 144 PF00828.19 Ribosomal_L27A Family 3 127 128 82.1 5.2e-23 1 CL0588
Cotton_A_07260_CDS 8 113 8 113 PF00168.30 C2 Domain 1 103 103 42.5 6.4e-11 1 CL0154
Cotton_A_07260_CDS 311 349 311 349 PF00614.22 PLDc Family 1 28 28 40.4 2e-10 1 CL0479
Cotton_A_07260_CDS 640 666 639 666 PF00614.22 PLDc Family 2 28 28 31.5 1.3e-07 1 CL0479
Cotton_A_07260_CDS 716 786 714 786 PF12357.8 PLD_C Family 3 72 72 89.8 7.6e-26 1 No_clan
Cotton_A_13632_CDS 3 287 1 290 PF01095.19 Pectinesterase Family 7 295 298 198.6 9e-59 1 CL0268
Cotton_A_27610_CDS 119 458 96 459 PF00561.20 Abhydrolase_1 Domain 28 254 257 26.4 4.8e-06 1 CL0028
Cotton_A_05822_CDS 17 72 17 78 PF00076.22 RRM_1 Domain 1 55 70 59.7 1.8e-16 1 CL0221
Cotton_A_37875_CDS 39 368 39 370 PF11955.8 PORR Family 1 324 326 384.4 3.6e-115 1 No_clan
Cotton_A_13720_CDS 271 311 271 325 PF00412.22 LIM Domain 1 42 58 23.7 4.1e-05 1 CL0167
Cotton_A_13720_CDS 421 628 420 628 PF12315.8 DA1-like Family 2 208 208 324.9 1.6e-97 1 CL0126
Cotton_A_04709_CDS 40 125 35 126 PF01657.17 Stress-antifung Family 6 94 95 62.4 4.7e-17 1 No_clan
Cotton_A_04709_CDS 159 237 147 238 PF01657.17 Stress-antifung Family 21 94 95 33.6 4.6e-08 1 No_clan
Cotton_A_04709_CDS 357 620 354 625 PF07714.17 Pkinase_Tyr Domain 4 254 259 161.0 3.2e-47 1 CL0016
Cotton_A_01810_CDS 199 356 199 358 PF01764.25 Lipase_3 Family 1 140 142 132.3 1.1e-38 1 CL0028
Cotton_A_09671_CDS 25 58 25 58 PF02375.17 JmjN Family 1 34 34 49.5 2.9e-13 1 CL0029
Cotton_A_09671_CDS 232 350 232 351 PF02373.22 JmjC Domain 1 113 114 121.8 1.8e-35 1 CL0029
Cotton_A_16993_CDS 47 136 47 136 PF00447.17 HSF_DNA-bind Domain 1 96 96 104.5 3.4e-30 1 CL0123
Cotton_A_03933_CDS 164 265 164 266 PF02362.21 B3 Family 1 100 101 80.0 9.1e-23 1 CL0405
Cotton_A_03933_CDS 290 371 290 372 PF06507.13 Auxin_resp Family 1 82 83 115.1 1.3e-33 1 No_clan
Cotton_A_34943_CDS 15 301 12 302 PF03151.16 TPT Family 4 289 290 174.7 2.5e-51 1 CL0184
Cotton_A_17816_CDS 14 487 13 487 PF00888.22 Cullin Family 2 454 618 431.6 5.5e-129 1 No_clan
Cotton_A_17816_CDS 480 591 479 591 PF00888.22 Cullin Family 505 618 618 113.7 9.1e-33 1 No_clan
Cotton_A_17816_CDS 618 680 618 680 PF10557.9 Cullin_Nedd8 Domain 1 63 63 89.9 7.6e-26 1 CL0123
Cotton_A_24321_CDS 16 176 16 177 PF00071.22 Ras Domain 1 161 162 207.9 6.7e-62 1 CL0023
Cotton_A_20483_CDS 68 118 68 119 PF00847.20 AP2 Domain 1 53 54 48.4 7.9e-13 1 CL0081
Cotton_A_16288_CDS 6 147 2 152 PF05097.12 DUF688 Family 55 126 446 24.7 1.2e-05 1 No_clan
Cotton_A_16969_CDS 35 244 28 245 PF03181.15 BURP Family 7 214 215 216.8 2.6e-64 1 No_clan
Cotton_A_03880_CDS 277 382 277 383 PF03126.18 Plus-3 Domain 1 108 109 100.5 7.2e-29 1 No_clan
Cotton_A_07429_CDS 308 345 307 345 PF00400.32 WD40 Repeat 2 38 38 24.4 3.6e-05 1 CL0186
Cotton_A_19260_CDS 77 100 75 102 PF01535.20 PPR Family 6 29 31 11.2 0.35 1 CL0020
Cotton_A_19260_CDS 103 129 103 133 PF01535.20 PPR Family 1 27 31 24.7 1.8e-05 1 CL0020
Cotton_A_19260_CDS 176 201 176 203 PF01535.20 PPR Family 4 29 31 19.2 0.001 1 CL0020
Cotton_A_19260_CDS 204 229 204 232 PF01535.20 PPR Family 1 26 31 19.8 0.00063 1 CL0020
Cotton_A_19260_CDS 237 285 237 286 PF13041.6 PPR_2 Repeat 1 49 50 32.1 9.9e-08 1 CL0020
Cotton_A_19260_CDS 312 335 310 340 PF01535.20 PPR Family 3 26 31 12.4 0.14 1 CL0020
Cotton_A_19260_CDS 339 367 337 367 PF12854.7 PPR_1 Repeat 6 34 34 37.9 1e-09 1 CL0020
Cotton_A_19260_CDS 376 421 373 423 PF13041.6 PPR_2 Repeat 4 48 50 31.8 1.2e-07 1 CL0020
Cotton_A_19260_CDS 478 508 478 508 PF01535.20 PPR Family 1 31 31 24.3 2.4e-05 1 CL0020
Cotton_A_19260_CDS 510 558 510 559 PF13041.6 PPR_2 Repeat 1 49 50 45.4 6.8e-12 1 CL0020
Cotton_A_19260_CDS 611 658 611 660 PF13041.6 PPR_2 Repeat 1 48 50 31.6 1.4e-07 1 CL0020
Cotton_A_19260_CDS 685 707 684 710 PF01535.20 PPR Family 2 24 31 16.7 0.0063 1 CL0020
Cotton_A_24155_CDS 65 215 64 215 PF00005.27 ABC_tran Domain 2 137 137 96.4 1.9e-27 1 CL0023
Cotton_A_24155_CDS 366 578 366 578 PF01061.24 ABC2_membrane Family 1 210 210 121.9 2.3e-35 1 CL0181
Cotton_A_22834_CDS 46 284 39 289 PF00141.23 peroxidase Domain 5 224 229 244.0 1.6e-72 1 CL0617
Cotton_A_00526_CDS 43 92 43 93 PF00847.20 AP2 Domain 1 53 54 36.6 4e-09 1 CL0081
Cotton_A_06304_CDS 41 68 39 69 PF01535.20 PPR Family 3 30 31 19.2 0.00099 1 CL0020
Cotton_A_06304_CDS 106 135 105 135 PF01535.20 PPR Family 2 31 31 12.4 0.14 1 CL0020
Cotton_A_06304_CDS 172 221 172 221 PF13041.6 PPR_2 Repeat 1 50 50 54.7 8.3e-15 1 CL0020
Cotton_A_06304_CDS 243 290 242 291 PF13041.6 PPR_2 Repeat 2 49 50 40.5 2.2e-10 1 CL0020
Cotton_A_06304_CDS 312 361 312 361 PF13041.6 PPR_2 Repeat 1 50 50 55.3 5.6e-15 1 CL0020
Cotton_A_06304_CDS 386 410 385 415 PF01535.20 PPR Family 2 26 31 18.1 0.0022 1 CL0020
Cotton_A_06304_CDS 417 466 417 466 PF13041.6 PPR_2 Repeat 1 50 50 43.3 3.1e-11 1 CL0020
Cotton_A_06304_CDS 487 536 487 536 PF13041.6 PPR_2 Repeat 1 50 50 50.6 1.6e-13 1 CL0020
Cotton_A_06304_CDS 556 603 556 603 PF13041.6 PPR_2 Repeat 1 48 50 60.7 1.1e-16 1 CL0020
Cotton_A_06304_CDS 623 647 622 651 PF12854.7 PPR_1 Repeat 2 26 34 32.7 4.4e-08 1 CL0020
Cotton_A_06304_CDS 659 689 657 690 PF12854.7 PPR_1 Repeat 3 33 34 36.3 3.4e-09 1 CL0020
Cotton_A_23424_CDS 35 99 34 99 PF00808.23 CBFD_NFYB_HMF Domain 2 65 65 97.2 5.1e-28 1 CL0012
Cotton_A_02136_CDS 9 59 8 59 PF03765.15 CRAL_TRIO_N Domain 2 54 54 34.9 1.2e-08 1 CL0214
Cotton_A_02136_CDS 87 241 84 242 PF00650.20 CRAL_TRIO Domain 4 155 159 73.7 1.3e-20 1 CL0512
Cotton_A_14431_CDS 92 181 90 224 PF03634.13 TCP Family 3 101 156 100.9 1e-28 1 No_clan
Cotton_A_20669_CDS 65 104 65 106 PF14226.6 DIOX_N Family 1 41 118 31.8 2e-07 1 CL0029
Cotton_A_12739_CDS 156 234 156 236 PF00076.22 RRM_1 Domain 1 67 70 26.5 4.1e-06 1 CL0221
Cotton_A_26865_CDS 213 474 208 477 PF00069.25 Pkinase Domain 6 260 264 148.1 3e-43 1 CL0016
Cotton_A_06640_CDS 45 95 45 96 PF00847.20 AP2 Domain 1 53 54 46.9 2.3e-12 1 CL0081
Cotton_A_10009_CDS 39 171 38 179 PF00450.22 Peptidase_S10 Domain 2 136 419 176.5 1.1e-51 1 CL0028
Cotton_A_16651_CDS 23 51 23 51 PF00036.32 EF-hand_1 Domain 1 29 29 27.2 1.6e-06 1 CL0220
Cotton_A_16651_CDS 63 77 61 85 PF13202.6 EF-hand_5 Domain 4 18 25 15.9 0.0064 1 CL0220
Cotton_A_07137_CDS 2 57 1 59 PF01471.18 PG_binding_1 Domain 6 55 57 50.3 2e-13 1 CL0244
Cotton_A_21330_CDS 286 342 286 357 PF00076.22 RRM_1 Domain 1 56 70 39.9 2.7e-10 1 CL0221
Cotton_A_21330_CDS 448 514 448 516 PF00076.22 RRM_1 Domain 1 66 70 62.8 2e-17 1 CL0221
Cotton_A_21330_CDS 596 644 595 645 PF17780.1 OCRE Domain 3 51 52 67.5 7.4e-19 1 No_clan
Cotton_A_21330_CDS 982 1023 981 1025 PF01585.23 G-patch Family 2 43 45 42.8 3.5e-11 1 CL0449
Cotton_A_21358_CDS 31 182 12 182 PF01397.21 Terpene_synth Domain 24 192 192 172.1 1e-50 1 No_clan
Cotton_A_21358_CDS 213 424 213 430 PF03936.16 Terpene_synth_C Domain 1 231 267 235.6 6.3e-70 1 CL0613
Cotton_A_21358_CDS 530 650 524 657 PF14111.6 DUF4283 Domain 7 135 145 52.7 3e-14 1 No_clan
Cotton_A_09966_CDS 2 174 1 174 PF01154.17 HMG_CoA_synt_N Domain 2 174 174 269.2 1.5e-80 1 CL0046
Cotton_A_09966_CDS 175 449 175 449 PF08540.10 HMG_CoA_synt_C Domain 1 280 280 370.9 4.8e-111 1 CL0046
Cotton_A_17382_CDS 11 219 11 221 PF04654.12 DUF599 Family 1 208 210 261.6 4e-78 1 No_clan
Cotton_A_23894_CDS 31 171 28 171 PF04043.15 PMEI Domain 4 154 154 83.8 1.5e-23 1 No_clan
Cotton_A_23894_CDS 206 503 206 504 PF01095.19 Pectinesterase Family 1 297 298 478.1 7e-144 1 CL0268
Cotton_A_25263_CDS 6 161 5 162 PF13967.6 RSN1_TM Family 2 155 156 73.9 1.2e-20 1 No_clan
Cotton_A_25263_CDS 183 243 183 259 PF14703.6 PHM7_cyt Domain 1 60 176 32.6 8.8e-08 1 CL0221
Cotton_A_25263_CDS 279 336 267 336 PF14703.6 PHM7_cyt Domain 108 176 176 50.6 2.5e-13 1 CL0221
Cotton_A_25263_CDS 347 579 347 581 PF02714.15 RSN1_7TM Family 1 236 274 179.7 7.1e-53 1 CL0416
Cotton_A_08919_CDS 14 156 6 161 PF00190.22 Cupin_1 Domain 10 146 151 58.0 8.1e-16 1 CL0029
Cotton_A_08919_CDS 208 339 197 342 PF00190.22 Cupin_1 Domain 12 148 151 70.5 1.1e-19 1 CL0029
Cotton_A_02914_CDS 48 165 47 166 PF00238.19 Ribosomal_L14 Domain 2 121 122 164.0 1.4e-48 1 No_clan
Cotton_A_23509_CDS 45 101 3 109 PF04081.13 DNA_pol_delta_4 Family 62 118 131 78.6 5.2e-22 1 No_clan
Cotton_A_12800_CDS 41 473 40 474 PF01490.18 Aa_trans Family 2 408 409 401.1 4.4e-120 1 CL0062
Cotton_A_22569_CDS 220 748 214 766 PF03343.13 SART-1 Family 26 519 631 179.8 9.1e-53 1 No_clan
Cotton_A_22569_CDS 769 815 757 815 PF03343.13 SART-1 Family 585 631 631 75.1 4.6e-21 1 No_clan
Cotton_A_25257_CDS 297 353 297 354 PF00847.20 AP2 Domain 1 53 54 36.8 3.3e-09 1 CL0081
Cotton_A_25257_CDS 397 447 396 447 PF00847.20 AP2 Domain 2 53 54 37.1 2.7e-09 1 CL0081
Cotton_A_31757_CDS 88 192 88 192 PF04526.13 DUF568 Family 1 101 101 92.2 2.7e-26 1 No_clan
Cotton_A_14611_CDS 49 113 48 114 PF01423.22 LSM Domain 2 66 67 60.1 1.2e-16 1 CL0527
Cotton_A_10360_CDS 15 169 15 170 PF03398.14 Ist1 Family 1 163 164 132.5 1.3e-38 1 No_clan
Cotton_A_25440_CDS 91 309 91 310 PF07859.13 Abhydrolase_3 Domain 1 210 211 184.4 2.4e-54 1 CL0028
Cotton_A_29262_CDS 32 76 32 76 PF02671.21 PAH Repeat 1 45 45 39.6 4.1e-10 1 No_clan
Cotton_A_29262_CDS 109 152 108 152 PF02671.21 PAH Repeat 2 45 45 53.1 2.6e-14 1 No_clan
Cotton_A_04351_CDS 10 119 10 123 PF16884.5 ADH_N_2 Family 1 104 108 87.0 7.3e-25 1 CL0296
Cotton_A_04351_CDS 169 301 169 303 PF00107.26 ADH_zinc_N Family 1 127 130 88.7 3e-25 1 CL0063
Cotton_A_31689_CDS 490 532 489 532 PF13639.6 zf-RING_2 Domain 2 44 44 44.7 1.3e-11 1 CL0229
Cotton_A_37872_CDS 3 121 1 123 PF07000.11 DUF1308 Domain 36 156 164 72.8 2.9e-20 1 CL0280
Cotton_A_10517_CDS 225 258 225 260 PF00320.27 GATA Domain 1 34 36 58.0 5e-16 1 CL0167
Cotton_A_17808_CDS 113 156 112 156 PF13639.6 zf-RING_2 Domain 2 44 44 47.9 1.2e-12 1 CL0229
Cotton_A_31475_CDS 5 269 4 269 PF01459.22 Porin_3 Family 2 270 270 242.3 6.1e-72 1 CL0193
Cotton_A_27443_CDS 91 191 91 191 PF08241.12 Methyltransf_11 Domain 1 96 96 71.4 7.4e-20 1 CL0063
Cotton_A_10350_CDS 13 213 11 249 PF00378.20 ECH_1 Domain 4 203 251 139.9 8.7e-41 1 CL0127
Cotton_A_10350_CDS 310 488 310 489 PF02737.18 3HCDH_N Domain 1 179 180 192.2 7.2e-57 1 CL0063
Cotton_A_10350_CDS 491 584 491 584 PF00725.22 3HCDH Domain 1 97 97 63.3 2.4e-17 1 CL0106
Cotton_A_20160_CDS 138 181 137 181 PF13639.6 zf-RING_2 Domain 2 44 44 46.2 4.1e-12 1 CL0229
Cotton_A_04582_CDS 41 95 39 105 PF15663.5 zf-CCCH_3 Family 3 55 110 44.6 1.4e-11 1 CL0537
Cotton_A_04582_CDS 143 165 142 165 PF00642.24 zf-CCCH Family 4 27 27 23.0 5.3e-05 1 CL0537
Cotton_A_13554_CDS 25 69 23 71 PF00249.31 Myb_DNA-binding Domain 4 44 46 33.3 4e-08 1 CL0123
Cotton_A_13554_CDS 124 168 122 169 PF00249.31 Myb_DNA-binding Domain 3 45 46 38.8 7.6e-10 1 CL0123
Cotton_A_39649_CDS 33 169 33 170 PF00179.26 UQ_con Domain 1 139 140 148.8 7.2e-44 1 CL0208
Cotton_A_35341_CDS 61 123 61 123 PF00226.31 DnaJ Domain 1 63 63 36.4 4.3e-09 1 CL0392
Cotton_A_11793_CDS 14 132 13 132 PF00903.25 Glyoxalase Domain 2 128 128 44.0 2.3e-11 1 CL0104
Cotton_A_22013_CDS 187 257 157 301 PF00190.22 Cupin_1 Domain 38 111 151 26.3 4.5e-06 1 CL0029
Cotton_A_22013_CDS 351 516 351 518 PF00190.22 Cupin_1 Domain 1 149 151 82.8 1.9e-23 1 CL0029
Cotton_A_06285_CDS 196 509 196 509 PF04765.13 DUF616 Family 1 314 314 491.9 7.2e-148 1 No_clan
Cotton_A_08233_CDS 3 65 3 68 PF01423.22 LSM Domain 1 64 67 64.9 3.9e-18 1 CL0527
Cotton_A_01734_CDS 88 278 88 278 PF04056.14 Ssl1 Family 1 193 193 288.5 2.4e-86 1 CL0128
Cotton_A_01734_CDS 361 409 361 409 PF07975.12 C1_4 Domain 1 55 55 63.1 2.1e-17 1 CL0006
Cotton_A_29292_CDS 118 147 117 147 PF01535.20 PPR Family 2 31 31 18.2 0.002 1 CL0020
Cotton_A_29292_CDS 149 198 149 198 PF13041.6 PPR_2 Repeat 1 50 50 59.7 2.3e-16 1 CL0020
Cotton_A_29292_CDS 215 246 215 248 PF12854.7 PPR_1 Repeat 1 32 34 39.8 2.6e-10 1 CL0020
Cotton_A_29292_CDS 254 303 254 303 PF13041.6 PPR_2 Repeat 1 50 50 67.3 9.8e-19 1 CL0020
Cotton_A_29292_CDS 320 352 320 353 PF12854.7 PPR_1 Repeat 1 33 34 47.3 1.2e-12 1 CL0020
Cotton_A_29292_CDS 359 408 359 408 PF13041.6 PPR_2 Repeat 1 50 50 68.2 5.1e-19 1 CL0020
Cotton_A_29292_CDS 429 478 429 478 PF13041.6 PPR_2 Repeat 1 50 50 52.2 5.2e-14 1 CL0020
Cotton_A_29292_CDS 500 548 499 548 PF13041.6 PPR_2 Repeat 2 50 50 60.1 1.7e-16 1 CL0020
Cotton_A_29292_CDS 569 613 569 615 PF13041.6 PPR_2 Repeat 1 45 50 32.5 7e-08 1 CL0020
Cotton_A_37189_CDS 240 265 239 266 PF01535.20 PPR Family 5 30 31 9.5 1.2 1 CL0020
Cotton_A_37189_CDS 271 301 271 301 PF01535.20 PPR Family 1 31 31 20.7 0.00033 1 CL0020
Cotton_A_37189_CDS 307 350 307 350 PF13041.6 PPR_2 Repeat 5 48 50 53.9 1.5e-14 1 CL0020
Cotton_A_37189_CDS 369 401 369 402 PF12854.7 PPR_1 Repeat 1 33 34 37.0 2e-09 1 CL0020
Cotton_A_37189_CDS 412 457 412 457 PF13041.6 PPR_2 Repeat 5 50 50 55.7 4.2e-15 1 CL0020
Cotton_A_00452_CDS 34 223 34 223 PF04427.18 Brix Domain 1 193 193 69.8 3.2e-19 1 CL0458
Cotton_A_20011_CDS 21 93 19 93 PF04969.16 CS Domain 3 76 76 67.0 2.2e-18 1 CL0190
Cotton_A_09711_CDS 41 183 39 189 PF01625.21 PMSR Family 3 147 153 204.3 1e-60 1 No_clan
Cotton_A_39410_CDS 180 212 179 212 PF07719.17 TPR_2 Repeat 2 34 34 27.7 1.7e-06 1 CL0020
Cotton_A_27654_CDS 45 98 44 100 PF04770.12 ZF-HD_dimer Family 2 53 55 99.0 1.3e-28 1 No_clan
Cotton_A_12587_CDS 256 427 256 427 PF00270.29 DEAD Domain 1 176 176 171.6 1.3e-50 1 CL0023
Cotton_A_12587_CDS 475 572 462 572 PF00271.31 Helicase_C Family 14 111 111 91.9 3.1e-26 1 CL0023
Cotton_A_16255_CDS 151 174 151 177 PF01535.20 PPR Family 4 27 31 9.8 0.97 1 CL0020
Cotton_A_16255_CDS 179 208 179 209 PF01535.20 PPR Family 1 30 31 30.2 3e-07 1 CL0020
Cotton_A_16255_CDS 255 277 251 278 PF01535.20 PPR Family 6 28 31 12.0 0.19 1 CL0020
Cotton_A_00274_CDS 1 433 1 436 PF00996.18 GDI Family 1 432 436 772.8 7.3e-233 1 CL0063
Cotton_A_06805_CDS 44 173 21 174 PF03737.15 RraA-like Family 8 149 150 146.9 4.8e-43 1 CL0364
Cotton_A_08003_CDS 146 242 126 260 PF00777.18 Glyco_transf_29 Family 27 125 269 75.0 6.2e-21 1 No_clan
Cotton_A_08003_CDS 279 316 262 341 PF00777.18 Glyco_transf_29 Family 198 236 269 23.1 4.2e-05 1 No_clan
Cotton_A_15716_CDS 23 54 23 56 PF02861.20 Clp_N Family 1 32 53 21.8 0.00015 1 No_clan
Cotton_A_15716_CDS 135 170 134 173 PF02861.20 Clp_N Family 13 50 53 14.7 0.025 1 No_clan
Cotton_A_20924_CDS 19 69 14 72 PF00403.26 HMA Domain 6 59 62 31.7 1.6e-07 1 No_clan
Cotton_A_04058_CDS 58 518 58 537 PF00067.22 p450 Domain 1 445 463 274.4 1.6e-81 1 No_clan
Cotton_A_01006_CDS 7 61 7 61 PF05641.12 Agenet Domain 1 61 61 33.7 3.6e-08 1 CL0049
Cotton_A_25959_CDS 27 480 25 485 PF00083.24 Sugar_tr Family 2 447 452 397.5 7.6e-119 1 CL0015
Cotton_A_40686_CDS 146 454 146 454 PF02536.14 mTERF Family 1 314 314 362.1 1.9e-108 1 No_clan
Cotton_A_30431_CDS 9 56 9 56 PF00249.31 Myb_DNA-binding Domain 1 46 46 38.8 7.8e-10 1 CL0123
Cotton_A_30431_CDS 62 105 62 107 PF00249.31 Myb_DNA-binding Domain 1 44 46 51.8 6.8e-14 1 CL0123
Cotton_A_12332_CDS 50 318 46 321 PF07714.17 Pkinase_Tyr Domain 5 256 259 146.7 7.2e-43 1 CL0016
Cotton_A_16064_CDS 220 352 217 354 PF09733.9 VEFS-Box Family 4 135 137 197.1 9.6e-59 1 No_clan
Cotton_A_25772_CDS 120 165 106 165 PF03105.19 SPX Domain 339 384 384 34.9 1.6e-08 1 No_clan
Cotton_A_31657_CDS 14 37 14 37 PF01754.16 zf-A20 Family 1 24 24 47.4 1.3e-12 1 No_clan
Cotton_A_31657_CDS 102 138 102 139 PF01428.16 zf-AN1 Family 1 39 40 39.7 3.9e-10 1 No_clan
Cotton_A_16276_CDS 4 86 4 124 PF14223.6 Retrotran_gag_2 Family 1 83 138 27.7 1.8e-06 1 CL0523
Cotton_A_06063_CDS 48 80 44 81 PF08263.12 LRRNT_2 Family 7 40 41 23.2 6.3e-05 1 No_clan
Cotton_A_06063_CDS 116 173 114 174 PF13855.6 LRR_8 Repeat 3 60 61 33.7 2.3e-08 1 CL0022
Cotton_A_03039_CDS 65 108 64 109 PF13639.6 zf-RING_2 Domain 2 43 44 34.4 2.1e-08 1 CL0229
Cotton_A_03039_CDS 113 171 113 171 PF14599.6 zinc_ribbon_6 Domain 1 59 59 92.6 1.1e-26 1 No_clan
Cotton_A_05517_CDS 18 179 18 180 PF00071.22 Ras Domain 1 161 162 182.2 5.3e-54 1 CL0023
Cotton_A_12446_CDS 134 170 133 181 PF00514.23 Arm Repeat 2 37 41 22.6 7.9e-05 1 CL0020
Cotton_A_12446_CDS 190 222 183 223 PF00514.23 Arm Repeat 8 40 41 30.3 3e-07 1 CL0020
Cotton_A_12446_CDS 225 264 225 265 PF00514.23 Arm Repeat 1 40 41 29.9 3.9e-07 1 CL0020
Cotton_A_12446_CDS 309 348 309 349 PF00514.23 Arm Repeat 1 40 41 21.7 0.00014 1 CL0020
Cotton_A_12446_CDS 530 632 528 634 PF00651.31 BTB Domain 4 109 111 91.0 5.4e-26 1 CL0033
Cotton_A_00684_CDS 39 107 7 108 PF02519.14 Auxin_inducible Family 20 89 90 98.7 1.6e-28 1 No_clan
Cotton_A_13982_CDS 3 316 2 318 PF08267.12 Meth_synt_1 Domain 2 311 313 397.1 6.6e-119 1 CL0160
Cotton_A_13982_CDS 432 755 432 756 PF01717.18 Meth_synt_2 Domain 1 323 324 528.2 7.4e-159 1 CL0160
Cotton_A_01772_CDS 22 128 21 129 PF16457.5 PH_12 Domain 3 133 134 32.9 8e-08 1 CL0266
Cotton_A_01772_CDS 328 376 327 376 PF00415.18 RCC1 Repeat 2 50 50 47.3 2.4e-12 1 CL0186
Cotton_A_01772_CDS 379 431 379 431 PF00415.18 RCC1 Repeat 1 50 50 40.0 4.6e-10 1 CL0186
Cotton_A_01772_CDS 435 483 434 483 PF00415.18 RCC1 Repeat 2 50 50 46.0 6.1e-12 1 CL0186
Cotton_A_01772_CDS 498 547 498 547 PF00415.18 RCC1 Repeat 1 50 50 50.5 2.4e-13 1 CL0186
Cotton_A_01772_CDS 550 599 550 599 PF00415.18 RCC1 Repeat 1 50 50 38.1 1.7e-09 1 CL0186
Cotton_A_01772_CDS 604 651 604 651 PF00415.18 RCC1 Repeat 3 50 50 50.6 2.1e-13 1 CL0186
Cotton_A_01772_CDS 655 721 654 722 PF01363.21 FYVE Domain 2 67 68 40.9 1.7e-10 1 CL0390
Cotton_A_01772_CDS 915 949 915 951 PF13713.6 BRX_N Domain 1 35 37 59.2 2.5e-16 1 No_clan
Cotton_A_01772_CDS 956 1025 956 1025 PF16627.5 BRX_assoc Disordered 1 70 70 83.1 1.1e-23 1 No_clan
Cotton_A_01772_CDS 1031 1086 1031 1086 PF08381.11 BRX Domain 1 56 56 100.6 2.1e-29 1 No_clan
Cotton_A_23873_CDS 12 57 12 59 PF00249.31 Myb_DNA-binding Domain 1 44 46 45.7 5.3e-12 1 CL0123
Cotton_A_23873_CDS 68 107 67 109 PF00249.31 Myb_DNA-binding Domain 3 42 46 46.0 4.3e-12 1 CL0123
Cotton_A_16375_CDS 130 207 130 211 PF01336.25 tRNA_anti-codon Domain 1 72 76 49.3 3.7e-13 1 CL0021
Cotton_A_16375_CDS 250 599 250 600 PF00152.20 tRNA-synt_2 Domain 1 313 314 284.5 9.1e-85 1 CL0040
Cotton_A_34486_CDS 13 82 13 82 PF00076.22 RRM_1 Domain 1 70 70 44.9 7.7e-12 1 CL0221
Cotton_A_04752_CDS 99 268 59 269 PF01852.19 START Domain 41 208 209 94.5 5.5e-27 1 CL0209
Cotton_A_16324_CDS 25 147 13 156 PF00892.20 EamA Family 13 134 137 56.0 4.6e-15 1 CL0184
Cotton_A_16324_CDS 183 290 160 291 PF00892.20 EamA Family 37 136 137 27.4 3e-06 1 CL0184
Cotton_A_04049_CDS 35 108 29 111 PF01283.19 Ribosomal_S26e Family 32 105 108 119.6 7.5e-35 1 No_clan
Cotton_A_07989_CDS 166 205 166 205 PF13923.6 zf-C3HC4_2 Domain 1 40 40 34.9 9.7e-09 1 CL0229
Cotton_A_07989_CDS 299 447 296 448 PF02182.17 SAD_SRA Domain 6 156 157 163.0 4.1e-48 1 CL0178
Cotton_A_07989_CDS 544 570 544 577 PF15227.6 zf-C3HC4_4 Domain 1 27 42 30.6 2.7e-07 1 CL0229
Cotton_A_38634_CDS 1 138 1 138 PF05514.11 HR_lesion Family 1 138 138 199.9 1.7e-59 1 CL0131
Cotton_A_23489_CDS 93 131 92 132 PF00514.23 Arm Repeat 2 40 41 28.0 1.5e-06 1 CL0020
Cotton_A_23489_CDS 134 172 133 173 PF00514.23 Arm Repeat 2 40 41 26.7 4e-06 1 CL0020
Cotton_A_23489_CDS 176 213 175 214 PF00514.23 Arm Repeat 3 40 41 25.5 9.2e-06 1 CL0020
Cotton_A_39331_CDS 70 756 21 756 PF03030.16 H_PPase Family 21 650 650 856.3 1.7e-257 1 No_clan
Cotton_A_16272_CDS 41 131 38 133 PF01412.18 ArfGap Domain 23 115 117 67.5 1e-18 1 No_clan
Cotton_A_23050_CDS 21 359 21 360 PF03630.14 Fumble Family 1 329 330 455.3 1.1e-136 1 CL0108
Cotton_A_14957_CDS 71 276 71 277 PF11264.8 ThylakoidFormat Family 1 215 216 250.8 1.1e-74 1 No_clan
Cotton_A_12334_CDS 233 253 232 254 PF05553.11 DUF761 Family 2 22 36 27.9 1.2e-06 1 No_clan
Cotton_A_27976_CDS 58 231 57 231 PF00213.18 OSCP Family 2 172 172 150.0 6.8e-44 1 CL0255
Cotton_A_34034_CDS 55 566 54 567 PF14929.6 TAF1_subA Family 2 368 369 322.2 5.5e-96 1 No_clan
Cotton_A_21904_CDS 131 262 129 263 PF03004.14 Transposase_24 Family 3 141 142 81.3 7.3e-23 1 No_clan
Cotton_A_22704_CDS 36 99 36 99 PF00462.24 Glutaredoxin Domain 1 60 60 48.5 7.3e-13 1 CL0172
Cotton_A_28983_CDS 15 77 15 77 PF00462.24 Glutaredoxin Domain 1 60 60 80.5 7.6e-23 1 CL0172
Cotton_A_30718_CDS 88 144 87 145 PF02701.15 zf-Dof Family 2 58 59 108.0 1.8e-31 1 No_clan
Cotton_A_07226_CDS 12 107 12 107 PF03807.17 F420_oxidored Family 1 97 97 70.7 1.1e-19 1 CL0063
Cotton_A_07226_CDS 169 217 169 220 PF14748.6 P5CR_dimer Domain 1 49 103 61.5 7.6e-17 1 CL0106
Cotton_A_07226_CDS 270 328 262 328 PF14748.6 P5CR_dimer Domain 47 103 103 65.6 3.9e-18 1 CL0106
Cotton_A_34326_CDS 140 181 139 182 PF13639.6 zf-RING_2 Domain 2 43 44 47.3 1.8e-12 1 CL0229
Cotton_A_15500_CDS 5 43 4 54 PF12937.7 F-box-like Domain 7 46 48 34.1 1.9e-08 1 CL0271
Cotton_A_17823_CDS 2 166 1 167 PF02536.14 mTERF Family 151 313 314 64.6 7.2e-18 1 No_clan
Cotton_A_29201_CDS 9 172 9 172 PF07933.14 DUF1681 Family 1 148 148 183.0 2.6e-54 1 CL0266
Cotton_A_09031_CDS 251 380 251 381 PF00004.29 AAA Domain 1 131 132 145.3 1.3e-42 1 CL0023
Cotton_A_09031_CDS 403 446 403 447 PF17862.1 AAA_lid_3 Domain 1 44 45 43.2 2.4e-11 1 CL0671
Cotton_A_09031_CDS 462 641 461 642 PF01434.18 Peptidase_M41 Domain 2 190 191 214.5 1.1e-63 1 CL0126
Cotton_A_11657_CDS 31 113 30 116 PF00106.25 adh_short Domain 2 82 195 42.3 5.6e-11 1 CL0063
Cotton_A_00105_CDS 380 448 380 448 PF00076.22 RRM_1 Domain 1 70 70 63.0 1.7e-17 1 CL0221
Cotton_A_00105_CDS 480 552 480 553 PF00076.22 RRM_1 Domain 1 69 70 41.6 7.9e-11 1 CL0221
Cotton_A_07645_CDS 74 180 74 181 PF14365.6 Neprosin_AP Family 1 117 118 129.0 1.2e-37 1 No_clan
Cotton_A_07645_CDS 194 416 194 416 PF03080.15 Neprosin Family 1 222 222 295.4 2.2e-88 1 No_clan
Cotton_A_31378_CDS 94 367 94 376 PF03552.14 Cellulose_synt Family 1 289 722 249.0 1.1e-73 1 CL0110
Cotton_A_08900_CDS 109 419 109 419 PF00225.23 Kinesin Domain 1 333 333 336.2 1.7e-100 1 CL0023
Cotton_A_08900_CDS 1028 1069 1026 1071 PF13920.6 zf-C3HC4_3 Domain 3 48 50 38.1 9.9e-10 1 CL0229
Cotton_A_03012_CDS 28 237 22 238 PF10494.9 Stk19 Family 11 244 245 108.9 3.2e-31 1 No_clan
Cotton_A_20038_CDS 46 115 46 116 PF01480.17 PWI Family 1 71 72 96.5 8.3e-28 1 No_clan
Cotton_A_12442_CDS 28 486 27 488 PF00083.24 Sugar_tr Family 2 450 452 414.0 7.8e-124 1 CL0015
Cotton_A_40341_CDS 71 113 71 114 PF06203.14 CCT Motif 1 43 44 64.1 8.9e-18 1 CL0281
Cotton_A_23229_CDS 82 210 82 211 PF03364.20 Polyketide_cyc Family 1 129 130 48.4 1e-12 1 CL0209
Cotton_A_07602_CDS 112 403 112 403 PF00069.25 Pkinase Domain 1 264 264 227.7 1.6e-67 1 CL0016
Cotton_A_26098_CDS 12 56 10 57 PF03107.16 C1_2 Domain 3 46 47 32.1 1.1e-07 1 CL0006
Cotton_A_22049_CDS 672 813 662 816 PF00326.21 Peptidase_S9 Domain 61 208 212 64.7 7.7e-18 1 CL0028
Cotton_A_29416_CDS 8 78 8 80 PF00645.18 zf-PARP Domain 1 80 82 57.9 1.4e-15 1 CL0167
Cotton_A_29416_CDS 168 330 168 330 PF08645.11 PNK3P Family 1 162 162 154.2 2.2e-45 1 CL0137
Cotton_A_06154_CDS 54 160 53 168 PF00861.22 Ribosomal_L18p Family 2 106 116 67.7 1.1e-18 1 CL0267
Cotton_A_30977_CDS 80 151 78 151 PF02201.18 SWIB Domain 3 74 74 100.2 4.2e-29 1 No_clan
Cotton_A_08277_CDS 52 104 51 106 PF00646.33 F-box Domain 2 46 48 31.6 1.1e-07 1 CL0271
Cotton_A_08277_CDS 116 400 116 400 PF01167.18 Tub Domain 1 241 241 321.1 5e-96 1 CL0395
Cotton_A_13124_CDS 272 329 271 329 PF13855.6 LRR_8 Repeat 2 61 61 36.0 4.2e-09 1 CL0022
Cotton_A_13124_CDS 342 398 340 398 PF13855.6 LRR_8 Repeat 3 61 61 29.0 6.6e-07 1 CL0022
Cotton_A_09353_CDS 76 120 76 120 PF12023.8 DUF3511 Family 1 45 45 87.6 3.3e-25 1 No_clan
Cotton_A_24976_CDS 15 253 15 253 PF13561.6 adh_short_C2 Domain 1 234 234 207.8 1.6e-61 1 CL0063
Cotton_A_32580_CDS 122 230 121 237 PF13911.6 AhpC-TSA_2 Domain 2 106 113 56.0 3.7e-15 1 CL0172
Cotton_A_26200_CDS 103 127 102 129 PF01535.20 PPR Family 3 27 31 12.4 0.14 1 CL0020
Cotton_A_26200_CDS 134 178 130 179 PF13041.6 PPR_2 Repeat 5 49 50 45.4 6.6e-12 1 CL0020
Cotton_A_26200_CDS 196 226 196 229 PF12854.7 PPR_1 Repeat 1 31 34 34.6 1.1e-08 1 CL0020
Cotton_A_26200_CDS 235 284 235 284 PF13041.6 PPR_2 Repeat 1 50 50 49.8 2.8e-13 1 CL0020
Cotton_A_26200_CDS 305 354 305 354 PF13041.6 PPR_2 Repeat 1 50 50 66.8 1.4e-18 1 CL0020
Cotton_A_26200_CDS 376 424 375 424 PF13041.6 PPR_2 Repeat 2 50 50 72.0 3.2e-20 1 CL0020
Cotton_A_26200_CDS 445 494 445 494 PF13041.6 PPR_2 Repeat 1 50 50 70.8 7.9e-20 1 CL0020
Cotton_A_26200_CDS 526 555 525 557 PF12854.7 PPR_1 Repeat 3 32 34 33.1 3.4e-08 1 CL0020
Cotton_A_26200_CDS 568 596 567 596 PF01535.20 PPR Family 3 31 31 9.4 1.3 1 CL0020
Cotton_A_28594_CDS 46 419 46 420 PF00282.19 Pyridoxal_deC Domain 1 374 375 410.9 3.8e-123 1 CL0061
Cotton_A_31979_CDS 3 315 3 315 PF01112.18 Asparaginase_2 Domain 1 306 306 380.7 4.3e-114 1 CL0052
Cotton_A_39411_CDS 73 136 58 137 PF07651.16 ANTH Domain 99 175 277 45.8 3.9e-12 1 CL0009
Cotton_A_38567_CDS 2 63 1 66 PF13456.6 RVT_3 Domain 59 121 124 43.2 3.1e-11 1 CL0219
Cotton_A_27000_CDS 212 339 207 353 PF16016.5 VASt Domain 8 139 154 81.7 7.1e-23 1 CL0209
Cotton_A_33235_CDS 56 336 51 342 PF00069.25 Pkinase Domain 6 255 264 138.6 2.4e-40 1 CL0016
Cotton_A_04442_CDS 103 357 100 357 PF00069.25 Pkinase Domain 4 264 264 181.7 1.7e-53 1 CL0016
Cotton_A_04442_CDS 435 491 435 492 PF12202.8 OSR1_C Domain 1 63 64 23.7 4.2e-05 1 CL0487
Cotton_A_38541_CDS 29 265 29 267 PF00262.18 Calreticulin Family 1 254 367 196.5 5.8e-58 1 CL0004
Cotton_A_38541_CDS 266 339 265 339 PF00262.18 Calreticulin Family 293 367 367 71.1 7.5e-20 1 CL0004
Cotton_A_30820_CDS 244 279 239 301 PF15502.6 MPLKIP Family 6 37 62 29.9 4.8e-07 1 No_clan
Cotton_A_27608_CDS 111 184 109 196 PF00153.27 Mito_carr Family 4 83 97 63.6 1.2e-17 1 No_clan
Cotton_A_27486_CDS 70 141 70 150 PF02823.16 ATP-synt_DE_N Domain 1 72 80 60.7 9.4e-17 1 No_clan
Cotton_A_32397_CDS 78 211 77 211 PF02681.14 DUF212 Family 2 128 128 163.1 3.1e-48 1 CL0525
Cotton_A_36089_CDS 145 179 145 179 PF08880.11 QLQ Domain 1 35 35 53.7 1.3e-14 1 No_clan
Cotton_A_36089_CDS 215 257 215 257 PF08879.10 WRC Domain 1 43 43 74.8 3e-21 1 No_clan
Cotton_A_22410_CDS 145 377 145 431 PF00069.25 Pkinase Domain 1 212 264 58.6 6.1e-16 1 CL0016
Cotton_A_30224_CDS 3 109 3 118 PF07047.12 OPA3 Family 1 109 125 94.2 4.8e-27 1 No_clan
Cotton_A_21078_CDS 170 213 170 213 PF13639.6 zf-RING_2 Domain 1 44 44 51.1 1.2e-13 1 CL0229
Cotton_A_06049_CDS 142 197 142 197 PF02045.15 CBFB_NFYA Family 1 56 56 87.3 7.4e-25 1 No_clan
Cotton_A_33025_CDS 81 246 80 246 PF04727.13 ELMO_CED12 Family 2 177 177 169.2 9.1e-50 1 No_clan
Cotton_A_03648_CDS 73 157 69 159 PF00153.27 Mito_carr Family 5 94 97 69.3 2.1e-19 1 No_clan
Cotton_A_03648_CDS 172 256 167 257 PF00153.27 Mito_carr Family 7 96 97 62.2 3.2e-17 1 No_clan
Cotton_A_13067_CDS 12 51 10 56 PF00646.33 F-box Domain 4 43 48 24.2 2.2e-05 1 CL0271
Cotton_A_13067_CDS 121 161 117 161 PF01344.25 Kelch_1 Repeat 8 46 46 38.5 6.1e-10 1 CL0186
Cotton_A_13067_CDS 164 208 163 209 PF01344.25 Kelch_1 Repeat 2 45 46 43.9 1.2e-11 1 CL0186
Cotton_A_12672_CDS 24 164 24 164 PF11938.8 DUF3456 Family 1 156 156 116.2 1.9e-33 1 No_clan
Cotton_A_37667_CDS 22 63 22 63 PF08263.12 LRRNT_2 Family 1 41 41 28.0 1.9e-06 1 No_clan
Cotton_A_37667_CDS 139 197 138 198 PF13855.6 LRR_8 Repeat 2 60 61 31.1 1.5e-07 1 CL0022
Cotton_A_37667_CDS 406 667 402 667 PF07714.17 Pkinase_Tyr Domain 5 259 259 118.3 3.4e-34 1 CL0016
Cotton_A_02310_CDS 121 236 119 238 PF01426.18 BAH Domain 3 120 122 58.2 7.2e-16 1 No_clan
Cotton_A_02310_CDS 342 488 340 489 PF07500.14 TFIIS_M Domain 3 111 112 79.0 3.5e-22 1 No_clan
Cotton_A_00569_CDS 3 49 1 53 PF00297.22 Ribosomal_L3 Family 21 67 369 49.4 3.1e-13 1 CL0575
Cotton_A_38560_CDS 110 583 110 583 PF00759.19 Glyco_hydro_9 Domain 1 411 411 421.1 6.2e-126 1 CL0059
Cotton_A_35784_CDS 11 113 1 128 PF04043.15 PMEI Domain 31 134 154 59.9 3.5e-16 1 No_clan
Cotton_A_35784_CDS 166 462 166 463 PF01095.19 Pectinesterase Family 1 297 298 502.2 3e-151 1 CL0268
Cotton_A_23434_CDS 40 102 40 107 PF16209.5 PhoLip_ATPase_N Family 1 62 67 78.0 3.2e-22 1 No_clan
Cotton_A_23434_CDS 528 620 515 622 PF13246.6 Cation_ATPase Family 14 89 91 39.2 5.5e-10 1 CL0137
Cotton_A_23434_CDS 883 1133 883 1134 PF16212.5 PhoLip_ATPase_C Family 1 248 249 293.8 1.2e-87 1 No_clan
Cotton_A_28507_CDS 272 409 272 409 PF00004.29 AAA Domain 1 132 132 129.1 1.4e-37 1 CL0023
Cotton_A_28507_CDS 431 469 431 493 PF17862.1 AAA_lid_3 Domain 1 39 45 47.2 1.4e-12 1 CL0671
Cotton_A_28507_CDS 473 518 465 518 PF09336.10 Vps4_C Domain 16 61 61 41.8 7.9e-11 1 CL0671
Cotton_A_10093_CDS 192 241 191 242 PF00847.20 AP2 Domain 2 53 54 51.7 7.6e-14 1 CL0081
Cotton_A_30569_CDS 138 438 105 438 PF01501.20 Glyco_transf_8 Family 10 256 256 281.5 6.2e-84 1 CL0110
Cotton_A_23764_CDS 18 338 17 339 PF03405.14 FA_desaturase_2 Domain 2 325 326 508.6 5.5e-153 1 CL0044
Cotton_A_33061_CDS 236 445 233 476 PF07714.17 Pkinase_Tyr Domain 4 218 259 138.0 3.3e-40 1 CL0016
Cotton_A_40332_CDS 36 163 36 165 PF01113.20 DapB_N Domain 1 122 124 59.8 2.8e-16 1 CL0063
Cotton_A_40332_CDS 172 287 168 298 PF05173.14 DapB_C Domain 5 108 121 52.6 4.1e-14 1 CL0139
Cotton_A_36143_CDS 3 100 2 101 PF01657.17 Stress-antifung Family 2 94 95 48.8 8.3e-13 1 No_clan
Cotton_A_36143_CDS 190 439 188 462 PF07714.17 Pkinase_Tyr Domain 3 228 259 157.8 3.1e-46 1 CL0016
Cotton_A_10104_CDS 11 54 7 54 PF13041.6 PPR_2 Repeat 7 50 50 32.0 1e-07 1 CL0020
Cotton_A_10104_CDS 74 123 74 123 PF13041.6 PPR_2 Repeat 1 50 50 48.7 6.5e-13 1 CL0020
Cotton_A_10104_CDS 144 193 144 193 PF13041.6 PPR_2 Repeat 1 50 50 50.6 1.7e-13 1 CL0020
Cotton_A_10104_CDS 214 262 214 263 PF13041.6 PPR_2 Repeat 1 49 50 39.1 6.4e-10 1 CL0020
Cotton_A_10104_CDS 285 333 284 333 PF13041.6 PPR_2 Repeat 2 50 50 70.6 9.1e-20 1 CL0020
Cotton_A_10104_CDS 355 399 354 399 PF13041.6 PPR_2 Repeat 2 50 50 35.5 8.4e-09 1 CL0020
Cotton_A_15423_CDS 6 58 3 58 PF07333.12 SLR1-BP Domain 4 58 58 40.2 3.5e-10 1 CL0054
Cotton_A_28302_CDS 4 99 1 99 PF00931.22 NB-ARC Domain 151 252 252 89.7 1.7e-25 1 CL0023
Cotton_A_35738_CDS 9 143 9 145 PF10914.8 DUF2781 Family 1 144 147 107.1 1e-30 1 No_clan
Cotton_A_34961_CDS 119 252 119 252 PF00005.27 ABC_tran Domain 1 118 137 67.4 1.8e-18 1 CL0023
Cotton_A_01532_CDS 102 311 101 311 PF14543.6 TAXi_N Domain 2 178 178 101.6 5.7e-29 1 CL0129
Cotton_A_01532_CDS 331 473 330 474 PF14541.6 TAXi_C Domain 2 160 161 64.3 1.1e-17 1 CL0129
Cotton_A_03515_CDS 140 197 140 203 PF12357.8 PLD_C Family 1 60 72 48.2 7.3e-13 1 No_clan
Cotton_A_06963_CDS 144 252 141 256 PF06480.15 FtsH_ext Family 7 105 109 33.2 5.1e-08 1 No_clan
Cotton_A_06963_CDS 365 497 364 498 PF00004.29 AAA Domain 2 131 132 142.0 1.4e-41 1 CL0023
Cotton_A_06963_CDS 527 566 525 566 PF17862.1 AAA_lid_3 Domain 6 45 45 47.7 9.5e-13 1 CL0671
Cotton_A_06963_CDS 580 762 580 763 PF01434.18 Peptidase_M41 Domain 1 190 191 222.1 5.5e-66 1 CL0126
Cotton_A_16494_CDS 5 158 4 158 PF03079.14 ARD Domain 2 157 157 202.2 5.1e-60 1 CL0029
Cotton_A_37045_CDS 167 403 163 404 PF00931.22 NB-ARC Domain 5 251 252 166.3 6.7e-49 1 CL0023
Cotton_A_37045_CDS 481 552 478 570 PF00931.22 NB-ARC Domain 4 79 252 48.6 6e-13 1 CL0023
Cotton_A_06785_CDS 3 67 2 68 PF05493.13 ATP_synt_H Family 2 61 62 76.4 1.7e-21 1 No_clan
Cotton_A_14615_CDS 328 594 326 595 PF00664.23 ABC_membrane Family 3 273 274 87.2 1.4e-24 1 CL0241
Cotton_A_14615_CDS 659 792 659 794 PF00005.27 ABC_tran Domain 1 135 137 72.8 3.8e-20 1 CL0023
Cotton_A_14615_CDS 982 1193 947 1219 PF00664.23 ABC_membrane Family 39 250 274 97.1 1.3e-27 1 CL0241
Cotton_A_14615_CDS 1282 1430 1282 1430 PF00005.27 ABC_tran Domain 1 137 137 97.8 7.3e-28 1 CL0023
Cotton_A_04893_CDS 104 435 103 436 PF03062.19 MBOAT Family 2 347 348 195.7 1.4e-57 1 CL0517
Cotton_A_31968_CDS 10 76 2 98 PF00931.22 NB-ARC Domain 157 222 252 54.8 7.6e-15 1 CL0023
Cotton_A_25490_CDS 40 159 35 160 PF15413.6 PH_11 Domain 4 104 105 72.7 2.9e-20 1 CL0266
Cotton_A_37348_CDS 55 246 54 249 PF00149.28 Metallophos Domain 2 201 204 124.0 1.1e-35 1 CL0163
Cotton_A_03699_CDS 234 310 232 312 PF12872.7 OST-HTH Domain 3 70 72 41.3 1e-10 1 CL0123
Cotton_A_03699_CDS 350 398 348 408 PF00076.22 RRM_1 Domain 9 60 70 30.1 3.1e-07 1 CL0221
Cotton_A_11896_CDS 7 94 5 100 PF12796.7 Ank_2 Repeat 3 76 83 28.2 2.1e-06 1 CL0465
Cotton_A_11896_CDS 110 216 109 217 PF12796.7 Ank_2 Repeat 2 82 83 34.4 2.4e-08 1 CL0465
Cotton_A_21497_CDS 24 104 21 113 PF00133.22 tRNA-synt_1 Family 4 82 602 32.9 2.1e-08 1 CL0039
Cotton_A_21497_CDS 194 756 174 758 PF00133.22 tRNA-synt_1 Family 115 600 602 104.8 3.6e-30 1 CL0039
Cotton_A_21497_CDS 796 926 796 934 PF08264.13 Anticodon_1 Domain 1 146 152 45.6 6.6e-12 1 CL0258
Cotton_A_08620_CDS 115 346 115 346 PF07816.11 DUF1645 Family 1 191 191 149.7 1.4e-43 1 No_clan
Cotton_A_31629_CDS 16 85 16 86 PF00076.22 RRM_1 Domain 1 69 70 55.7 3.2e-15 1 CL0221
Cotton_A_31629_CDS 104 172 104 173 PF00076.22 RRM_1 Domain 1 69 70 67.6 6.3e-19 1 CL0221
Cotton_A_31629_CDS 195 263 195 264 PF00076.22 RRM_1 Domain 1 69 70 76.4 1.1e-21 1 CL0221
Cotton_A_31629_CDS 298 366 298 367 PF00076.22 RRM_1 Domain 1 69 70 70.0 1.1e-19 1 CL0221
Cotton_A_30941_CDS 126 240 126 240 PF13962.6 PGG Domain 1 116 116 101.0 3.5e-29 1 No_clan
Cotton_A_03114_CDS 61 107 60 107 PF13639.6 zf-RING_2 Domain 2 44 44 47.1 2.2e-12 1 CL0229
Cotton_A_23991_CDS 7 105 7 106 PF03195.14 LOB Family 1 98 99 123.9 3.1e-36 1 No_clan
Cotton_A_02065_CDS 1 99 1 169 PF14009.6 DUF4228 Family 1 105 179 81.9 7e-23 1 No_clan
Cotton_A_35967_CDS 171 267 171 267 PF10497.9 zf-4CXXC_R1 Domain 1 99 99 133.1 3.4e-39 1 No_clan
Cotton_A_19739_CDS 164 302 163 303 PF07526.11 POX Domain 2 135 136 175.7 6.5e-52 1 No_clan
Cotton_A_19739_CDS 371 410 371 410 PF05920.11 Homeobox_KN Family 1 40 40 63.8 9.6e-18 1 CL0123
Cotton_A_26271_CDS 22 57 19 64 PF00646.33 F-box Domain 5 40 48 22.2 9.4e-05 1 CL0271
Cotton_A_24367_CDS 67 125 67 127 PF07939.11 DUF1685 Family 1 58 60 91.0 2.8e-26 1 No_clan
Cotton_A_28569_CDS 87 364 67 364 PF05055.12 DUF677 Family 59 336 336 54.9 6.4e-15 1 CL0133
Cotton_A_24363_CDS 86 409 85 436 PF01494.19 FAD_binding_3 Family 2 323 349 52.7 3.9e-14 1 CL0063
Cotton_A_24363_CDS 564 637 562 637 PF00498.26 FHA Family 3 69 69 45.0 1.1e-11 1 CL0357
Cotton_A_29218_CDS 27 75 23 75 PF13857.6 Ank_5 Repeat 9 55 56 31.8 1.2e-07 1 CL0465
Cotton_A_06985_CDS 31 247 31 248 PF00314.17 Thaumatin Domain 1 213 214 243.9 1.3e-72 1 CL0293
Cotton_A_15239_CDS 16 50 14 51 PF14766.6 RPA_interact_N Family 4 38 39 47.0 1.4e-12 1 No_clan
Cotton_A_15239_CDS 65 156 64 156 PF14767.6 RPA_interact_M Family 2 77 77 71.6 6.1e-20 1 No_clan
Cotton_A_15239_CDS 172 253 172 253 PF14768.6 RPA_interact_C Family 1 81 81 73.1 2e-20 1 No_clan
Cotton_A_30529_CDS 159 366 159 368 PF03360.16 Glyco_transf_43 Family 1 203 205 239.1 3.9e-71 1 CL0110
Cotton_A_35367_CDS 62 603 62 606 PF07058.11 MAP70 Family 1 550 554 975.9 6.4e-294 1 No_clan
Cotton_A_12574_CDS 2 46 1 46 PF12776.7 Myb_DNA-bind_3 Domain 52 96 96 46.3 6.2e-12 1 CL0123
Cotton_A_12574_CDS 134 228 134 228 PF12776.7 Myb_DNA-bind_3 Domain 1 96 96 111.3 3.3e-32 1 CL0123
Cotton_A_15675_CDS 224 406 224 408 PF00005.27 ABC_tran Domain 1 135 137 57.9 1.5e-15 1 CL0023
Cotton_A_15675_CDS 553 736 552 748 PF01061.24 ABC2_membrane Family 2 182 210 102.2 2.5e-29 1 CL0181
Cotton_A_15675_CDS 748 810 748 810 PF08370.11 PDR_assoc Family 1 65 65 80.8 4.4e-23 1 No_clan
Cotton_A_15675_CDS 887 1039 887 1039 PF00005.27 ABC_tran Domain 1 137 137 64.2 1.7e-17 1 CL0023
Cotton_A_15675_CDS 1184 1375 1184 1375 PF01061.24 ABC2_membrane Family 1 210 210 130.8 4.5e-38 1 CL0181
Cotton_A_01233_CDS 134 259 134 261 PF01553.21 Acyltransferase Family 1 133 135 98.3 2.7e-28 1 CL0228
Cotton_A_30762_CDS 30 255 14 255 PF07722.13 Peptidase_C26 Domain 24 216 216 134.8 3.4e-39 1 CL0014
Cotton_A_04134_CDS 26 153 14 155 PF04845.13 PurA Family 82 217 219 75.9 2.8e-21 1 CL0609
Cotton_A_04134_CDS 207 270 160 273 PF04845.13 PurA Family 153 216 219 47.9 1e-12 1 CL0609
Cotton_A_21678_CDS 5 139 1 139 PF01397.21 Terpene_synth Domain 49 192 192 167.5 2.7e-49 1 No_clan
Cotton_A_21678_CDS 170 304 170 306 PF03936.16 Terpene_synth_C Domain 1 142 267 165.4 1.6e-48 1 CL0613
Cotton_A_30551_CDS 205 376 204 376 PF02222.22 ATP-grasp Family 2 171 171 184.3 1.3e-54 1 CL0179
Cotton_A_30551_CDS 403 465 403 466 PF17769.1 PurK_C Domain 1 55 56 62.7 1.9e-17 1 CL0105
Cotton_A_30551_CDS 485 624 485 626 PF00731.20 AIRC Domain 1 146 148 191.6 5.1e-57 1 No_clan
Cotton_A_27621_CDS 86 159 86 159 PF01502.18 PRA-CH Family 1 74 74 92.8 8.4e-27 1 No_clan
Cotton_A_27621_CDS 202 271 181 272 PF01503.17 PRA-PH Family 21 82 83 38.6 1.1e-09 1 CL0231
Cotton_A_34200_CDS 71 108 71 109 PF09811.9 Yae1_N Family 1 38 39 39.4 3.6e-10 1 CL0255
Cotton_A_09160_CDS 99 434 98 438 PF00224.21 PK Family 2 343 348 386.3 1.1e-115 1 CL0151
Cotton_A_09160_CDS 461 548 454 559 PF02887.16 PK_C Domain 10 101 117 57.7 1.2e-15 1 No_clan
Cotton_A_38545_CDS 61 164 61 165 PF00011.21 HSP20 Family 1 101 102 109.9 5.8e-32 1 CL0190
Cotton_A_05054_CDS 30 73 28 74 PF08263.12 LRRNT_2 Family 3 40 41 33.1 4.9e-08 1 No_clan
Cotton_A_05054_CDS 92 137 78 137 PF13855.6 LRR_8 Repeat 16 61 61 27.1 2.5e-06 1 CL0022
Cotton_A_05054_CDS 221 281 221 281 PF13855.6 LRR_8 Repeat 1 61 61 38.8 5.6e-10 1 CL0022
Cotton_A_05054_CDS 319 377 317 377 PF13855.6 LRR_8 Repeat 3 61 61 27.4 2e-06 1 CL0022
Cotton_A_05054_CDS 462 521 461 521 PF13855.6 LRR_8 Repeat 2 61 61 29.2 5.8e-07 1 CL0022
Cotton_A_05054_CDS 533 593 533 593 PF13855.6 LRR_8 Repeat 1 61 61 30.4 2.5e-07 1 CL0022
Cotton_A_05054_CDS 756 1015 751 1018 PF00069.25 Pkinase Domain 6 259 264 148.4 2.5e-43 1 CL0016
Cotton_A_32685_CDS 47 204 47 204 PF18266.1 Ncstrn_small Domain 1 168 168 132.5 1.5e-38 1 CL0035
Cotton_A_32685_CDS 246 454 246 477 PF05450.15 Nicastrin Family 1 234 234 213.0 4.2e-63 1 CL0035
Cotton_A_12798_CDS 685 942 647 943 PF01513.21 NAD_kinase Family 34 291 292 200.2 4.2e-59 1 CL0240
Cotton_A_04092_CDS 26 88 26 88 PF00280.18 potato_inhibit Domain 1 64 64 81.1 6.8e-23 1 CL0367
Cotton_A_27417_CDS 401 528 401 529 PF07526.11 POX Domain 1 135 136 141.5 2.4e-41 1 No_clan
Cotton_A_27417_CDS 601 640 601 640 PF05920.11 Homeobox_KN Family 1 40 40 64.0 8.3e-18 1 CL0123
Cotton_A_30954_CDS 36 222 34 223 PF01612.20 DNA_pol_A_exo1 Domain 3 175 176 83.2 1.7e-23 1 CL0219
Cotton_A_30954_CDS 276 334 272 335 PF00013.29 KH_1 Domain 4 65 66 38.7 6.3e-10 1 CL0007
Cotton_A_23297_CDS 21 269 20 270 PF12146.8 Hydrolase_4 Family 2 238 239 213.8 2.1e-63 1 CL0028
Cotton_A_35236_CDS 128 173 128 173 PF12906.7 RINGv Domain 1 48 48 39.5 4.3e-10 1 CL0229
Cotton_A_31725_CDS 72 242 71 255 PF04893.17 Yip1 Domain 2 165 172 42.5 5.6e-11 1 CL0112
Cotton_A_19519_CDS 7 93 7 165 PF18052.1 Rx_N Domain 1 84 93 72.7 2.2e-20 1 No_clan
Cotton_A_19519_CDS 201 437 198 439 PF00931.22 NB-ARC Domain 4 250 252 164.4 2.6e-48 1 CL0023
Cotton_A_19519_CDS 599 655 599 659 PF13855.6 LRR_8 Repeat 1 59 61 29.5 4.5e-07 1 CL0022
Cotton_A_33006_CDS 35 226 34 228 PF00106.25 adh_short Domain 2 193 195 152.4 9.7e-45 1 CL0063
Cotton_A_15140_CDS 11 91 10 110 PF13947.6 GUB_WAK_bind Domain 2 80 106 73.7 1.8e-20 1 No_clan
Cotton_A_15140_CDS 233 268 233 273 PF07645.15 EGF_CA Domain 1 38 42 41.2 1.4e-10 1 CL0001
Cotton_A_15140_CDS 345 499 345 504 PF00069.25 Pkinase Domain 1 152 264 110.1 1.2e-31 1 CL0016
Cotton_A_15563_CDS 27 492 27 497 PF03092.16 BT1 Family 1 507 524 273.5 2.4e-81 1 CL0015
Cotton_A_17449_CDS 107 384 104 386 PF00069.25 Pkinase Domain 5 260 264 146.0 1.3e-42 1 CL0016
Cotton_A_04554_CDS 3 118 1 180 PF13347.6 MFS_2 Family 49 152 427 35.6 3.7e-09 1 CL0015
Cotton_A_20053_CDS 8 144 8 145 PF00179.26 UQ_con Domain 1 139 140 176.0 2.9e-52 1 CL0208
Cotton_A_31365_CDS 15 95 13 102 PF00011.21 HSP20 Family 3 91 102 44.4 1.5e-11 1 CL0190
Cotton_A_08538_CDS 185 240 185 240 PF02045.15 CBFB_NFYA Family 1 56 56 90.6 7.2e-26 1 No_clan
Cotton_A_24189_CDS 3 44 1 47 PF00643.24 zf-B_box Domain 4 39 42 29.7 5.1e-07 1 No_clan
Cotton_A_24189_CDS 52 91 51 95 PF00643.24 zf-B_box Domain 2 37 42 26.5 5.2e-06 1 No_clan
Cotton_A_04666_CDS 52 133 9 133 PF04885.13 Stig1 Family 55 139 139 107.5 7.5e-31 1 No_clan
Cotton_A_30301_CDS 174 222 174 223 PF13041.6 PPR_2 Repeat 1 49 50 40.3 2.7e-10 1 CL0020
Cotton_A_30301_CDS 253 278 253 280 PF01535.20 PPR Family 4 29 31 18.4 0.0018 1 CL0020
Cotton_A_30301_CDS 280 327 278 327 PF13041.6 PPR_2 Repeat 3 50 50 44.5 1.3e-11 1 CL0020
Cotton_A_20153_CDS 25 145 21 145 PF04852.12 DUF640 Family 6 126 126 207.8 4.5e-62 1 No_clan
Cotton_A_04885_CDS 33 152 32 155 PF00252.18 Ribosomal_L16 Family 2 124 132 128.4 1.7e-37 1 No_clan
Cotton_A_04885_CDS 501 533 500 533 PF00444.18 Ribosomal_L36 Domain 5 38 38 49.3 3.9e-13 1 No_clan
Cotton_A_16572_CDS 66 90 63 93 PF01535.20 PPR Family 4 28 31 15.9 0.011 1 CL0020
Cotton_A_16572_CDS 91 138 91 139 PF13041.6 PPR_2 Repeat 1 48 50 34.4 1.9e-08 1 CL0020
Cotton_A_16572_CDS 164 194 164 194 PF01535.20 PPR Family 1 31 31 14.3 0.036 1 CL0020
Cotton_A_16572_CDS 195 219 195 221 PF01535.20 PPR Family 1 25 31 29.5 5e-07 1 CL0020
Cotton_A_28672_CDS 156 427 155 428 PF04515.12 Choline_transpo Family 2 325 326 155.9 1.5e-45 1 No_clan
Cotton_A_36152_CDS 1 118 1 167 PF14009.6 DUF4228 Family 1 145 179 57.0 3.1e-15 1 No_clan
Cotton_A_11245_CDS 30 94 29 94 PF00808.23 CBFD_NFYB_HMF Domain 2 65 65 95.0 2.4e-27 1 CL0012
Cotton_A_22265_CDS 83 558 80 558 PF03055.15 RPE65 Family 4 463 463 323.2 3.5e-96 1 No_clan
Cotton_A_18393_CDS 98 176 95 177 PF14389.6 Lzipper-MIP1 Family 4 83 84 78.1 4.8e-22 1 No_clan
Cotton_A_18393_CDS 380 517 378 517 PF04784.14 DUF547 Family 3 123 123 110.4 5.6e-32 1 No_clan
Cotton_A_33125_CDS 89 166 73 173 PF00067.22 p450 Domain 31 113 463 30.1 2e-07 1 No_clan
Cotton_A_31763_CDS 220 265 219 265 PF10533.9 Plant_zn_clust Domain 2 49 49 63.7 1.1e-17 1 No_clan
Cotton_A_31763_CDS 269 325 268 326 PF03106.15 WRKY Domain 2 58 59 90.6 5.5e-26 1 CL0274
Cotton_A_15887_CDS 132 182 119 182 PF00076.22 RRM_1 Domain 21 70 70 37.5 1.6e-09 1 CL0221
Cotton_A_00393_CDS 15 153 14 157 PF11566.8 PI31_Prot_N Family 2 158 163 81.5 5.9e-23 1 No_clan
Cotton_A_00393_CDS 203 265 184 265 PF08577.11 PI31_Prot_C Family 1 78 78 26.4 1.2e-05 1 No_clan
Cotton_A_30125_CDS 212 276 212 277 PF00076.22 RRM_1 Domain 1 69 70 46.0 3.4e-12 1 CL0221
Cotton_A_30125_CDS 442 553 442 553 PF04059.12 RRM_2 Family 1 97 97 115.6 8.5e-34 1 CL0221
Cotton_A_19050_CDS 16 88 2 91 PF00954.20 S_locus_glycop Domain 37 108 111 31.8 1.6e-07 1 No_clan
Cotton_A_19050_CDS 280 541 277 545 PF00069.25 Pkinase Domain 5 257 264 152.2 1.6e-44 1 CL0016
Cotton_A_17089_CDS 207 401 204 431 PF00664.23 ABC_membrane Family 5 182 274 38.0 1.5e-09 1 CL0241
Cotton_A_17089_CDS 491 623 491 626 PF00005.27 ABC_tran Domain 1 134 137 62.1 7.5e-17 1 CL0023
Cotton_A_17089_CDS 766 935 764 938 PF00664.23 ABC_membrane Family 3 174 274 71.8 7.1e-20 1 CL0241
Cotton_A_17089_CDS 973 1062 972 1085 PF00664.23 ABC_membrane Family 160 249 274 46.9 2.8e-12 1 CL0241
Cotton_A_17089_CDS 1155 1302 1155 1302 PF00005.27 ABC_tran Domain 1 137 137 99.4 2.3e-28 1 CL0023
Cotton_A_27534_CDS 4 193 3 193 PF04722.13 Ssu72 Family 2 191 191 268.3 3e-80 1 CL0031
Cotton_A_28233_CDS 44 136 40 140 PF00664.23 ABC_membrane Family 5 94 274 36.6 3.7e-09 1 CL0241
Cotton_A_28233_CDS 216 322 216 350 PF00005.27 ABC_tran Domain 1 101 137 53.3 4e-14 1 CL0023
Cotton_A_28233_CDS 389 469 317 472 PF00664.23 ABC_membrane Family 149 229 274 22.6 7.3e-05 1 CL0241
Cotton_A_36263_CDS 4 32 4 48 PF00670.21 AdoHcyase_NAD Domain 1 29 162 24.2 2.9e-05 1 CL0063
Cotton_A_38472_CDS 68 130 68 130 PF00226.31 DnaJ Domain 1 63 63 68.7 3.4e-19 1 CL0392
Cotton_A_14742_CDS 255 302 255 302 PF12906.7 RINGv Domain 1 48 48 43.3 2.9e-11 1 CL0229
Cotton_A_07426_CDS 46 87 45 87 PF08263.12 LRRNT_2 Family 2 41 41 39.4 5.3e-10 1 No_clan
Cotton_A_07426_CDS 137 152 136 152 PF13516.6 LRR_6 Repeat 2 17 24 10.9 0.4 1 CL0022
Cotton_A_07426_CDS 281 299 281 299 PF13516.6 LRR_6 Repeat 1 19 24 12.7 0.11 1 CL0022
Cotton_A_07426_CDS 360 419 358 419 PF13855.6 LRR_8 Repeat 3 61 61 37.2 1.8e-09 1 CL0022
Cotton_A_07426_CDS 432 492 423 492 PF13855.6 LRR_8 Repeat 2 61 61 28.8 7.8e-07 1 CL0022
Cotton_A_07426_CDS 558 613 554 613 PF13855.6 LRR_8 Repeat 6 61 61 29.0 6.7e-07 1 CL0022
Cotton_A_07426_CDS 718 777 717 777 PF13855.6 LRR_8 Repeat 2 61 61 35.6 5.5e-09 1 CL0022
Cotton_A_07426_CDS 914 1184 912 1186 PF00069.25 Pkinase Domain 3 260 264 152.2 1.6e-44 1 CL0016
Cotton_A_15683_CDS 38 174 38 180 PF01936.18 NYN Domain 1 141 147 103.6 1.3e-29 1 CL0280
Cotton_A_15683_CDS 595 652 588 656 PF14418.6 OHA Domain 10 69 77 33.6 2.5e-08 1 No_clan
Cotton_A_11301_CDS 79 247 25 248 PF06644.11 ATP11 Family 81 271 272 124.2 8.3e-36 1 No_clan
Cotton_A_20190_CDS 6 85 2 99 PF03004.14 Transposase_24 Family 43 128 142 32.5 8e-08 1 No_clan
Cotton_A_30654_CDS 381 755 381 756 PF03514.14 GRAS Family 1 373 374 359.0 2.7e-107 1 CL0063
Cotton_A_26923_CDS 98 286 97 286 PF04669.13 Polysacc_synt_4 Family 2 190 190 242.0 3.3e-72 1 No_clan
Cotton_A_21737_CDS 28 254 28 254 PF00230.20 MIP Family 1 227 227 264.9 6.2e-79 1 No_clan
Cotton_A_29502_CDS 5 94 4 110 PF00168.30 C2 Domain 2 88 103 55.9 4.1e-15 1 CL0154
Cotton_A_29502_CDS 251 342 250 354 PF00168.30 C2 Domain 3 91 103 71.4 6.2e-20 1 CL0154
Cotton_A_29502_CDS 413 519 413 519 PF00168.30 C2 Domain 1 103 103 83.1 1.4e-23 1 CL0154
Cotton_A_29502_CDS 577 685 577 685 PF00168.30 C2 Domain 1 103 103 86.0 1.8e-24 1 CL0154
Cotton_A_29502_CDS 830 985 830 985 PF08372.10 PRT_C Family 1 156 156 262.9 7.7e-79 1 CL0484
Cotton_A_26733_CDS 4 412 3 413 PF02458.15 Transferase Family 2 433 434 271.9 8.2e-81 1 CL0149
Cotton_A_13727_CDS 164 217 164 217 PF13867.6 SAP30_Sin3_bdg Family 1 54 54 78.9 2.7e-22 1 No_clan
Cotton_A_40345_CDS 114 315 112 322 PF01545.21 Cation_efflux Family 3 192 199 86.0 2.7e-24 1 No_clan
Cotton_A_21831_CDS 113 283 112 284 PF04144.13 SCAMP Family 2 173 174 175.6 1.1e-51 1 No_clan
Cotton_A_22352_CDS 22 82 21 82 PF00046.29 Homeodomain Domain 2 57 57 50.7 1.2e-13 1 CL0123
Cotton_A_06423_CDS 111 177 111 178 PF00542.19 Ribosomal_L12 Domain 1 66 67 83.3 1.1e-23 1 No_clan
Cotton_A_24588_CDS 432 487 432 487 PF00628.29 PHD Domain 1 52 52 42.4 4.8e-11 1 CL0390
Cotton_A_24588_CDS 779 821 771 823 PF00046.29 Homeodomain Domain 10 52 57 37.4 1.7e-09 1 CL0123
Cotton_A_33917_CDS 25 64 23 70 PF00646.33 F-box Domain 3 42 48 34.8 1.1e-08 1 CL0271
Cotton_A_33917_CDS 160 249 158 311 PF07734.13 FBA_1 Family 3 95 164 27.8 2e-06 1 CL0162
Cotton_A_14082_CDS 74 161 73 161 PF03330.18 DPBB_1 Domain 2 83 83 81.2 5.1e-23 1 CL0199
Cotton_A_14082_CDS 172 250 172 250 PF01357.21 Pollen_allerg_1 Domain 1 80 80 85.9 1.4e-24 1 CL0159
Cotton_A_15839_CDS 43 184 41 185 PF03208.19 PRA1 Family 3 142 143 158.5 7.8e-47 1 No_clan
Cotton_A_07866_CDS 66 208 65 208 PF00190.22 Cupin_1 Domain 2 143 151 163.0 3.6e-48 1 CL0029
Cotton_A_18266_CDS 21 109 9 109 PF02519.14 Auxin_inducible Family 8 90 90 99.9 6.7e-29 1 No_clan
Cotton_A_20526_CDS 88 346 88 346 PF00069.25 Pkinase Domain 1 264 264 248.9 5.2e-74 1 CL0016
Cotton_A_20526_CDS 394 454 367 455 PF13499.6 EF-hand_7 Domain 4 70 71 44.7 1.3e-11 1 CL0220
Cotton_A_20526_CDS 464 525 463 525 PF13499.6 EF-hand_7 Domain 2 71 71 50.8 1.7e-13 1 CL0220
Cotton_A_24509_CDS 100 516 100 522 PF00854.21 PTR2 Family 1 389 395 323.5 1.7e-96 1 CL0015
Cotton_A_06171_CDS 47 96 46 97 PF00847.20 AP2 Domain 2 53 54 51.5 8.6e-14 1 CL0081
Cotton_A_13990_CDS 70 158 68 168 PF03754.13 DUF313 Family 4 97 113 38.3 1.3e-09 1 CL0405
Cotton_A_27954_CDS 24 84 24 84 PF13921.6 Myb_DNA-bind_6 Domain 1 60 60 56.3 2.8e-15 1 CL0123
Cotton_A_00845_CDS 46 324 41 327 PF04142.15 Nuc_sug_transp Family 6 305 315 132.7 1.5e-38 1 CL0184
Cotton_A_06151_CDS 26 210 26 210 PF00445.18 Ribonuclease_T2 Domain 1 182 182 201.4 1.4e-59 1 No_clan
Cotton_A_38697_CDS 334 422 333 433 PF07986.12 TBCC Domain 2 89 120 72.1 3.1e-20 1 CL0391
Cotton_A_32702_CDS 13 128 5 131 PF03004.14 Transposase_24 Family 17 139 142 59.7 3.2e-16 1 No_clan
Cotton_A_08358_CDS 24 316 23 320 PF00248.21 Aldo_ket_red Domain 2 289 294 246.1 4.1e-73 1 No_clan
Cotton_A_02732_CDS 18 34 9 34 PF00400.32 WD40 Repeat 15 38 38 12.8 0.17 1 CL0186
Cotton_A_02732_CDS 42 76 38 76 PF00400.32 WD40 Repeat 5 38 38 30.3 5e-07 1 CL0186
Cotton_A_02732_CDS 87 122 79 122 PF00400.32 WD40 Repeat 6 38 38 26.6 7.5e-06 1 CL0186
Cotton_A_02732_CDS 130 164 126 164 PF00400.32 WD40 Repeat 5 38 38 31.9 1.6e-07 1 CL0186
Cotton_A_02732_CDS 170 204 168 204 PF00400.32 WD40 Repeat 3 38 38 18.5 0.0026 1 CL0186
Cotton_A_02732_CDS 237 263 224 263 PF00400.32 WD40 Repeat 13 37 38 19.3 0.0015 1 CL0186
Cotton_A_09370_CDS 34 115 22 124 PF00383.23 dCMP_cyt_deam_1 Family 13 93 101 39.5 4e-10 1 CL0109
Cotton_A_09370_CDS 149 283 149 283 PF08211.12 dCMP_cyt_deam_2 Family 1 133 133 169.3 4.6e-50 1 CL0109
Cotton_A_04400_CDS 8 494 6 496 PF01676.18 Metalloenzyme Family 36 246 248 311.3 4.1e-93 1 CL0088
Cotton_A_04400_CDS 55 273 54 274 PF06415.13 iPGM_N Domain 2 214 215 198.2 1.1e-58 1 No_clan
Cotton_A_40830_CDS 101 154 101 155 PF04818.13 CTD_bind Family 1 58 63 29.3 1.2e-06 1 No_clan
Cotton_A_39669_CDS 17 64 17 64 PF00249.31 Myb_DNA-binding Domain 1 46 46 59.3 3e-16 1 CL0123
Cotton_A_39669_CDS 70 115 70 115 PF00249.31 Myb_DNA-binding Domain 1 46 46 57.1 1.5e-15 1 CL0123
Cotton_A_04214_CDS 1 39 1 40 PF00004.29 AAA Domain 93 131 132 27.2 4.2e-06 1 CL0023
Cotton_A_04214_CDS 63 103 62 122 PF17862.1 AAA_lid_3 Domain 2 42 45 47.4 1.2e-12 1 CL0671
Cotton_A_28710_CDS 117 486 102 502 PF00067.22 p450 Domain 81 441 463 207.2 3.9e-61 1 No_clan
Cotton_A_23910_CDS 20 49 19 49 PF01535.20 PPR Family 2 31 31 13.0 0.093 1 CL0020
Cotton_A_23910_CDS 83 130 83 132 PF13041.6 PPR_2 Repeat 1 48 50 47.2 1.9e-12 1 CL0020
Cotton_A_23910_CDS 156 201 153 202 PF13041.6 PPR_2 Repeat 4 49 50 41.8 8.8e-11 1 CL0020
Cotton_A_23910_CDS 239 262 235 262 PF01535.20 PPR Family 8 31 31 12.6 0.13 1 CL0020
Cotton_A_23910_CDS 264 313 264 313 PF13041.6 PPR_2 Repeat 1 50 50 66.6 1.7e-18 1 CL0020
Cotton_A_23910_CDS 334 383 334 383 PF13041.6 PPR_2 Repeat 1 50 50 66.9 1.3e-18 1 CL0020
Cotton_A_23910_CDS 420 448 419 449 PF12854.7 PPR_1 Repeat 5 33 34 32.9 3.8e-08 1 CL0020
Cotton_A_23910_CDS 455 503 455 504 PF13041.6 PPR_2 Repeat 1 49 50 57.2 1.4e-15 1 CL0020
Cotton_A_23910_CDS 525 573 525 574 PF13041.6 PPR_2 Repeat 1 49 50 63.4 1.6e-17 1 CL0020
Cotton_A_23910_CDS 591 624 591 624 PF12854.7 PPR_1 Repeat 1 34 34 38.1 8.8e-10 1 CL0020
Cotton_A_23910_CDS 667 691 666 695 PF01535.20 PPR Family 2 26 31 10.5 0.6 1 CL0020
Cotton_A_23910_CDS 704 747 702 749 PF13041.6 PPR_2 Repeat 5 48 50 31.1 1.9e-07 1 CL0020
Cotton_A_09593_CDS 122 276 122 276 PF04442.14 CtaG_Cox11 Family 1 151 151 207.4 1e-61 1 No_clan
Cotton_A_22787_CDS 3 123 1 123 PF00112.23 Peptidase_C1 Domain 97 218 218 115.1 4.6e-33 1 CL0125
Cotton_A_06229_CDS 31 110 31 111 PF03810.19 IBN_N Family 1 73 74 44.7 9.5e-12 1 CL0020
Cotton_A_25811_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 46.2 3.7e-12 1 CL0123
Cotton_A_25811_CDS 71 111 67 112 PF00249.31 Myb_DNA-binding Domain 5 45 46 49.8 2.9e-13 1 CL0123
Cotton_A_33523_CDS 22 71 21 72 PF00847.20 AP2 Domain 2 53 54 50.5 1.8e-13 1 CL0081
Cotton_A_09374_CDS 4 235 4 235 PF06888.12 Put_Phosphatase Family 1 234 234 302.7 1.5e-90 1 CL0137
Cotton_A_40843_CDS 11 138 11 139 PF12165.8 Alfin Family 1 126 127 226.4 5.8e-68 1 No_clan
Cotton_A_40843_CDS 199 247 198 248 PF00628.29 PHD Domain 2 51 52 39.8 3.2e-10 1 CL0390
Cotton_A_22978_CDS 12 106 12 106 PF01247.18 Ribosomal_L35Ae Domain 1 95 95 154.2 8e-46 1 CL0575
Cotton_A_17937_CDS 94 134 90 134 PF11883.8 DUF3403 Family 7 46 46 34.3 1.9e-08 1 No_clan
Cotton_A_19454_CDS 161 504 159 504 PF01545.21 Cation_efflux Family 3 199 199 127.4 5.8e-37 1 No_clan
Cotton_A_14133_CDS 1 148 1 153 PF01596.17 Methyltransf_3 Domain 29 176 212 220.8 1.1e-65 1 CL0063
Cotton_A_14133_CDS 150 341 141 342 PF01596.17 Methyltransf_3 Domain 26 211 212 270.9 5e-81 1 CL0063
Cotton_A_19784_CDS 9 113 9 113 PF04628.13 Sedlin_N Family 1 118 131 98.6 3e-28 1 CL0212
Cotton_A_29852_CDS 7 107 6 110 PF13967.6 RSN1_TM Family 2 87 156 74.2 9.1e-21 1 No_clan
Cotton_A_29852_CDS 148 310 148 310 PF14703.6 PHM7_cyt Domain 1 176 176 153.2 8e-45 1 CL0221
Cotton_A_29852_CDS 321 443 321 447 PF02714.15 RSN1_7TM Family 1 124 274 109.7 1.5e-31 1 CL0416
Cotton_A_23679_CDS 60 480 12 482 PF00083.24 Sugar_tr Family 9 450 452 307.7 1.4e-91 1 CL0015
Cotton_A_18374_CDS 65 241 65 242 PF01397.21 Terpene_synth Domain 1 191 192 165.2 1.4e-48 1 No_clan
Cotton_A_18374_CDS 273 538 273 538 PF03936.16 Terpene_synth_C Domain 1 267 267 321.0 5.4e-96 1 CL0613
Cotton_A_30410_CDS 242 291 240 291 PF00847.20 AP2 Domain 3 54 54 51.3 1e-13 1 CL0081
Cotton_A_28314_CDS 18 136 16 136 PF00238.19 Ribosomal_L14 Domain 4 122 122 123.8 4.1e-36 1 No_clan
Cotton_A_13437_CDS 7 322 6 322 PF07992.14 Pyr_redox_2 Domain 2 294 294 186.8 4.9e-55 1 CL0063
Cotton_A_13771_CDS 82 342 62 348 PF00294.24 PfkB Family 31 295 302 142.4 1.8e-41 1 CL0118
Cotton_A_11740_CDS 124 197 121 199 PF03352.13 Adenine_glyco Family 4 75 177 83.6 1.4e-23 1 No_clan
Cotton_A_11740_CDS 194 273 192 273 PF03352.13 Adenine_glyco Family 98 177 177 92.4 2.7e-26 1 No_clan
Cotton_A_13408_CDS 141 188 140 188 PF02042.15 RWP-RK Family 2 49 49 73.2 1.2e-20 1 No_clan
Cotton_A_35182_CDS 50 140 48 141 PF12796.7 Ank_2 Repeat 3 82 83 43.4 3.9e-11 1 CL0465
Cotton_A_35182_CDS 149 241 148 243 PF12796.7 Ank_2 Repeat 2 81 83 53.2 3.4e-14 1 CL0465
Cotton_A_35182_CDS 384 511 380 513 PF01529.20 DHHC Family 6 132 134 111.4 3.3e-32 1 No_clan
Cotton_A_21029_CDS 1 70 1 71 PF06645.13 SPC12 Family 1 70 71 105.3 1.3e-30 1 No_clan
Cotton_A_28970_CDS 183 206 182 206 PF13516.6 LRR_6 Repeat 2 24 24 9.0 1.6 1 CL0022
Cotton_A_28970_CDS 362 385 361 385 PF13516.6 LRR_6 Repeat 2 24 24 15.1 0.018 1 CL0022
Cotton_A_28970_CDS 417 437 413 437 PF13516.6 LRR_6 Repeat 5 24 24 10.5 0.52 1 CL0022
Cotton_A_28970_CDS 465 488 464 488 PF13516.6 LRR_6 Repeat 2 24 24 13.1 0.079 1 CL0022
Cotton_A_28970_CDS 491 512 490 514 PF13516.6 LRR_6 Repeat 2 22 24 13.5 0.056 1 CL0022
Cotton_A_41319_CDS 1 174 1 175 PF02458.15 Transferase Family 1 174 434 163.3 7.1e-48 1 CL0149
Cotton_A_12314_CDS 34 55 32 58 PF05678.14 VQ Motif 4 25 28 27.4 1.7e-06 1 No_clan
Cotton_A_24215_CDS 63 112 60 112 PF00190.22 Cupin_1 Domain 102 151 151 30.9 1.8e-07 1 CL0029
Cotton_A_18571_CDS 12 153 3 155 PF01031.20 Dynamin_M Family 152 283 285 96.9 1.2e-27 1 No_clan
Cotton_A_24542_CDS 195 280 194 281 PF00564.24 PB1 Domain 2 83 84 72.4 2.1e-20 1 CL0072
Cotton_A_24542_CDS 819 1072 817 1072 PF07714.17 Pkinase_Tyr Domain 3 259 259 202.4 7.2e-60 1 CL0016
Cotton_A_40365_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 57.5 1.1e-15 1 CL0123
Cotton_A_40365_CDS 67 112 67 112 PF00249.31 Myb_DNA-binding Domain 1 46 46 53.8 1.6e-14 1 CL0123
Cotton_A_27190_CDS 88 242 88 243 PF14566.6 PTPlike_phytase Domain 1 155 156 175.9 6.1e-52 1 CL0031
Cotton_A_27190_CDS 506 662 506 662 PF14566.6 PTPlike_phytase Domain 1 156 156 175.8 6.5e-52 1 CL0031
Cotton_A_27190_CDS 945 1099 944 1100 PF14566.6 PTPlike_phytase Domain 2 153 156 105.4 2.9e-30 1 CL0031
Cotton_A_22182_CDS 186 241 186 247 PF14559.6 TPR_19 Domain 1 57 68 29.2 9.5e-07 1 CL0020
Cotton_A_22675_CDS 16 271 14 271 PF00069.25 Pkinase Domain 3 264 264 237.2 2e-70 1 CL0016
Cotton_A_34950_CDS 166 270 164 272 PF00651.31 BTB Domain 3 109 111 85.9 2.1e-24 1 CL0033
Cotton_A_07162_CDS 152 255 152 265 PF02362.21 B3 Family 1 90 101 52.7 3e-14 1 CL0405
Cotton_A_37871_CDS 44 290 39 291 PF00141.23 peroxidase Domain 3 228 229 240.8 1.4e-71 1 CL0617
Cotton_A_22448_CDS 55 179 54 179 PF04852.12 DUF640 Family 2 126 126 223.9 4.9e-67 1 No_clan
Cotton_A_21173_CDS 96 164 75 165 PF02225.22 PA Family 21 88 89 30.9 2e-07 1 CL0364
Cotton_A_21173_CDS 244 523 240 525 PF04258.13 Peptidase_A22B Family 4 282 284 279.2 3.9e-83 1 CL0130
Cotton_A_32293_CDS 265 331 263 333 PF04564.15 U-box Domain 5 71 73 62.0 4.5e-17 1 CL0229
Cotton_A_05010_CDS 76 192 75 209 PF00293.28 NUDIX Domain 2 114 131 46.9 2.6e-12 1 CL0261
Cotton_A_21623_CDS 17 131 16 132 PF06058.13 DCP1 Family 2 116 117 146.2 3.7e-43 1 CL0266
Cotton_A_25295_CDS 10 487 9 487 PF05694.11 SBP56 Family 2 454 454 690.9 7.3e-208 1 CL0186
Cotton_A_26302_CDS 7 36 7 37 PF01535.20 PPR Family 1 29 31 14.2 0.04 1 CL0020
Cotton_A_26302_CDS 39 69 39 69 PF01535.20 PPR Family 1 31 31 23.5 4.1e-05 1 CL0020
Cotton_A_26302_CDS 71 99 70 100 PF01535.20 PPR Family 2 30 31 26.0 6.8e-06 1 CL0020
Cotton_A_26302_CDS 101 124 101 125 PF01535.20 PPR Family 1 24 31 20.0 0.00057 1 CL0020
Cotton_A_26302_CDS 160 207 160 209 PF13041.6 PPR_2 Repeat 1 48 50 38.3 1.1e-09 1 CL0020
Cotton_A_26302_CDS 261 308 261 310 PF13041.6 PPR_2 Repeat 1 48 50 50.3 1.9e-13 1 CL0020
Cotton_A_26302_CDS 336 360 335 363 PF01535.20 PPR Family 2 26 31 19.9 0.00061 1 CL0020
Cotton_A_17119_CDS 9 618 9 618 PF00012.20 HSP70 Family 1 599 599 876.7 6.4e-264 1 CL0108
Cotton_A_00380_CDS 92 215 89 218 PF01529.20 DHHC Family 4 131 134 135.0 1.7e-39 1 No_clan
Cotton_A_26369_CDS 184 221 183 221 PF00400.32 WD40 Repeat 2 38 38 31.8 1.7e-07 1 CL0186
Cotton_A_26369_CDS 227 262 225 263 PF00400.32 WD40 Repeat 3 37 38 26.0 1.2e-05 1 CL0186
Cotton_A_26369_CDS 269 307 267 308 PF00400.32 WD40 Repeat 3 37 38 28.7 1.6e-06 1 CL0186
Cotton_A_26369_CDS 346 375 340 375 PF00400.32 WD40 Repeat 8 38 38 13.5 0.11 1 CL0186
Cotton_A_22607_CDS 7 271 5 274 PF00069.25 Pkinase Domain 4 260 264 176.6 6.1e-52 1 CL0016
Cotton_A_31742_CDS 24 252 24 252 PF06966.12 DUF1295 Family 1 235 235 292.0 3e-87 1 CL0115
Cotton_A_00884_CDS 35 163 33 163 PF04535.12 DUF588 Domain 3 150 150 86.6 1.4e-24 1 CL0396
Cotton_A_01284_CDS 32 186 32 187 PF02518.26 HATPase_c Domain 1 111 112 57.9 1.3e-15 1 CL0025
Cotton_A_01284_CDS 189 258 189 261 PF00183.18 HSP90 Family 1 74 517 55.9 3.6e-15 1 No_clan
Cotton_A_01284_CDS 257 509 255 514 PF00183.18 HSP90 Family 262 513 517 352.2 5.5e-105 1 No_clan
Cotton_A_23640_CDS 56 318 53 320 PF00069.25 Pkinase Domain 4 260 264 136.2 1.3e-39 1 CL0016
Cotton_A_23845_CDS 17 135 17 136 PF00072.24 Response_reg Domain 1 109 112 75.8 2.8e-21 1 CL0304
Cotton_A_14113_CDS 124 146 123 152 PF00023.30 Ank Repeat 2 24 32 25.2 1.5e-05 1 CL0465
Cotton_A_14113_CDS 177 231 172 231 PF13637.6 Ank_4 Repeat 2 55 55 34.0 3.1e-08 1 CL0465
Cotton_A_14113_CDS 240 301 226 307 PF12796.7 Ank_2 Repeat 24 75 83 40.3 3.6e-10 1 CL0465
Cotton_A_14113_CDS 451 568 450 568 PF13962.6 PGG Domain 2 116 116 91.3 3.4e-26 1 No_clan
Cotton_A_25798_CDS 201 286 200 286 PF01221.18 Dynein_light Domain 2 86 86 94.4 3.9e-27 1 No_clan
Cotton_A_12388_CDS 311 438 295 438 PF11721.8 Malectin Domain 32 165 165 107.7 6.4e-31 1 CL0202
Cotton_A_12388_CDS 469 534 466 537 PF07714.17 Pkinase_Tyr Domain 4 75 259 40.2 2.2e-10 1 CL0016
Cotton_A_12388_CDS 538 592 533 602 PF00069.25 Pkinase Domain 102 153 264 48.3 8.1e-13 1 CL0016
Cotton_A_21812_CDS 7 137 1 158 PF00407.19 Bet_v_1 Domain 7 136 151 59.2 4.3e-16 1 CL0209
Cotton_A_05702_CDS 22 95 22 98 PF07650.17 KH_2 Domain 1 75 78 47.2 1.5e-12 1 CL0007
Cotton_A_05702_CDS 108 190 107 190 PF00189.20 Ribosomal_S3_C Domain 2 83 83 88.2 3.9e-25 1 No_clan
Cotton_A_17158_CDS 143 257 143 259 PF03479.15 DUF296 Domain 1 105 107 98.9 2e-28 1 CL0615
Cotton_A_19124_CDS 89 201 89 201 PF06549.12 DUF1118 Family 1 115 115 159.1 4.6e-47 1 No_clan
Cotton_A_19144_CDS 29 152 1 154 PF00407.19 Bet_v_1 Domain 28 149 151 34.9 1.2e-08 1 CL0209
Cotton_A_01264_CDS 41 188 40 215 PF00149.28 Metallophos Domain 2 172 204 42.8 8.3e-11 1 CL0163
Cotton_A_38099_CDS 215 248 210 248 PF00400.32 WD40 Repeat 6 38 38 28.6 1.7e-06 1 CL0186
Cotton_A_38099_CDS 253 290 252 290 PF00400.32 WD40 Repeat 2 38 38 22.8 0.00012 1 CL0186
Cotton_A_38099_CDS 347 371 338 371 PF00400.32 WD40 Repeat 13 38 38 16.6 0.011 1 CL0186
Cotton_A_36367_CDS 4 175 1 180 PF07516.13 SecA_SW Family 63 156 199 30.3 4.1e-07 1 No_clan
Cotton_A_11892_CDS 125 145 121 146 PF00642.24 zf-CCCH Family 5 26 27 28.5 1e-06 1 CL0537
Cotton_A_27751_CDS 136 159 125 159 PF00400.32 WD40 Repeat 13 38 38 14.2 0.064 1 CL0186
Cotton_A_27751_CDS 190 219 183 220 PF00400.32 WD40 Repeat 9 37 38 13.7 0.089 1 CL0186
Cotton_A_27751_CDS 225 261 224 262 PF00400.32 WD40 Repeat 2 37 38 24.0 5e-05 1 CL0186
Cotton_A_27751_CDS 274 309 266 310 PF00400.32 WD40 Repeat 5 37 38 16.1 0.016 1 CL0186
Cotton_A_27751_CDS 323 353 318 354 PF00400.32 WD40 Repeat 6 37 38 16.8 0.0094 1 CL0186
Cotton_A_27751_CDS 363 405 362 406 PF00400.32 WD40 Repeat 2 37 38 14.7 0.042 1 CL0186
Cotton_A_05429_CDS 4 233 4 233 PF06888.12 Put_Phosphatase Family 1 234 234 319.4 1.2e-95 1 CL0137
Cotton_A_24710_CDS 41 354 40 354 PF01916.17 DS Domain 2 288 288 421.8 1.2e-126 1 CL0085
Cotton_A_40578_CDS 105 394 105 394 PF08392.12 FAE1_CUT1_RppA Family 1 290 290 474.4 1.2e-142 1 CL0046
Cotton_A_40578_CDS 411 491 408 492 PF08541.10 ACP_syn_III_C Domain 12 89 90 34.4 1.8e-08 1 CL0046
Cotton_A_17450_CDS 6 64 6 64 PF05641.12 Agenet Domain 1 61 61 56.2 3.4e-15 1 CL0049
Cotton_A_17450_CDS 349 401 346 407 PF03735.14 ENT Family 4 56 70 44.0 1.7e-11 1 No_clan
Cotton_A_19453_CDS 11 210 10 234 PF00483.23 NTP_transferase Family 2 198 248 96.9 1.4e-27 1 CL0110
Cotton_A_06786_CDS 180 231 179 231 PF05739.19 SNARE Family 2 53 53 43.1 3.1e-11 1 No_clan
Cotton_A_27987_CDS 252 417 230 438 PF00201.18 UDPGT Family 265 409 499 65.5 4e-18 1 CL0113
Cotton_A_09988_CDS 138 330 138 333 PF00270.29 DEAD Domain 1 173 176 147.9 2.5e-43 1 CL0023
Cotton_A_09988_CDS 402 507 398 507 PF00271.31 Helicase_C Family 5 111 111 73.8 1.3e-20 1 CL0023
Cotton_A_26867_CDS 4 152 3 153 PF14299.6 PP2 Family 4 145 146 90.1 1.3e-25 1 No_clan
Cotton_A_26497_CDS 429 484 428 484 PF13855.6 LRR_8 Repeat 2 61 61 37.5 1.5e-09 1 CL0022
Cotton_A_12391_CDS 12 109 10 109 PF16455.5 UBD Domain 3 104 104 113.7 4.2e-33 1 No_clan
Cotton_A_21056_CDS 132 356 122 364 PF09728.9 Taxilin Coiled-coil 13 249 308 167.7 3.4e-49 1 No_clan
Cotton_A_11626_CDS 10 117 9 132 PF00168.30 C2 Domain 2 91 103 33.5 3.9e-08 1 CL0154
Cotton_A_21617_CDS 3 74 3 74 PF00240.23 ubiquitin Domain 1 72 72 117.3 1.8e-34 1 CL0072
Cotton_A_21617_CDS 78 127 78 127 PF01020.17 Ribosomal_L40e Family 1 50 50 108.3 1.2e-31 1 CL0167
Cotton_A_20017_CDS 247 443 231 460 PF00201.18 UDPGT Family 252 409 499 85.8 2.7e-24 1 CL0113
Cotton_A_23152_CDS 84 174 83 181 PF01453.24 B_lectin Domain 3 98 105 72.9 2.6e-20 1 No_clan
Cotton_A_06842_CDS 128 245 126 249 PF18076.1 FGAR-AT_N Domain 3 107 115 73.3 1.5e-20 1 No_clan
Cotton_A_06842_CDS 272 321 272 321 PF18072.1 FGAR-AT_linker Domain 1 49 50 45.8 6.6e-12 1 No_clan
Cotton_A_34347_CDS 169 228 168 228 PF13855.6 LRR_8 Repeat 2 61 61 32.4 5.8e-08 1 CL0022
Cotton_A_34347_CDS 495 761 490 763 PF07714.17 Pkinase_Tyr Domain 6 257 259 78.8 3.7e-22 1 CL0016
Cotton_A_05171_CDS 88 204 81 206 PF05697.13 Trigger_N Family 8 107 141 41.7 1.3e-10 1 No_clan
Cotton_A_20993_CDS 65 219 64 221 PF04199.13 Cyclase Family 2 134 136 78.2 6.6e-22 1 CL0364
Cotton_A_21151_CDS 12 317 10 318 PF00294.24 PfkB Family 3 301 302 259.2 4.9e-77 1 CL0118
Cotton_A_21941_CDS 17 162 15 177 PF03162.13 Y_phosphatase2 Domain 3 148 165 194.5 8.9e-58 1 CL0031
Cotton_A_11468_CDS 100 375 96 375 PF07714.17 Pkinase_Tyr Domain 5 259 259 163.1 7.3e-48 1 CL0016
Cotton_A_27154_CDS 9 56 8 56 PF04627.13 ATP-synt_Eps Family 2 49 49 82.6 1.3e-23 1 No_clan
Cotton_A_16121_CDS 11 75 10 76 PF00313.22 CSD Domain 2 65 66 75.7 1.8e-21 1 CL0021
Cotton_A_16121_CDS 117 131 116 133 PF00098.23 zf-CCHC Domain 2 16 18 30.6 2.3e-07 1 CL0511
Cotton_A_16121_CDS 168 184 167 184 PF00098.23 zf-CCHC Domain 2 18 18 33.4 2.9e-08 1 CL0511
Cotton_A_03636_CDS 34 64 9 65 PF03765.15 CRAL_TRIO_N Domain 27 53 54 23.2 5.7e-05 1 CL0214
Cotton_A_03636_CDS 88 238 85 238 PF00650.20 CRAL_TRIO Domain 4 159 159 134.3 3e-39 1 CL0512
Cotton_A_09136_CDS 17 132 17 132 PF14749.6 Acyl-CoA_ox_N Domain 1 125 125 112.7 1.5e-32 1 CL0544
Cotton_A_09136_CDS 134 247 134 247 PF02770.19 Acyl-CoA_dh_M Domain 1 97 97 45.6 6e-12 1 No_clan
Cotton_A_04981_CDS 251 362 225 385 PF03031.18 NIF Family 26 129 156 31.0 1.9e-07 1 CL0137
Cotton_A_04981_CDS 698 756 693 756 PF00035.26 dsrm Domain 6 67 67 22.6 0.00013 1 CL0196
Cotton_A_23292_CDS 27 85 27 88 PF04398.12 DUF538 Family 1 62 112 50.5 2.5e-13 1 No_clan
Cotton_A_19206_CDS 58 186 57 186 PF04494.15 TFIID_NTD2 Family 2 130 130 150.9 2e-44 1 No_clan
Cotton_A_19206_CDS 345 376 339 376 PF00400.32 WD40 Repeat 7 38 38 16.8 0.0092 1 CL0186
Cotton_A_19206_CDS 414 446 408 446 PF00400.32 WD40 Repeat 7 38 38 27.3 4.4e-06 1 CL0186
Cotton_A_19206_CDS 453 488 450 488 PF00400.32 WD40 Repeat 4 38 38 29.0 1.3e-06 1 CL0186
Cotton_A_19206_CDS 493 530 492 530 PF00400.32 WD40 Repeat 2 38 38 35.9 8.4e-09 1 CL0186
Cotton_A_19206_CDS 534 572 534 572 PF00400.32 WD40 Repeat 1 38 38 37.3 3e-09 1 CL0186
Cotton_A_19206_CDS 576 614 576 614 PF00400.32 WD40 Repeat 1 38 38 36.5 5.6e-09 1 CL0186
Cotton_A_31803_CDS 16 233 12 233 PF00195.19 Chal_sti_synt_N Domain 7 225 225 353.5 4e-106 1 CL0046
Cotton_A_31803_CDS 243 368 243 369 PF02797.15 Chal_sti_synt_C Domain 1 132 151 183.5 2.4e-54 1 CL0046
Cotton_A_34269_CDS 47 144 46 147 PF04112.13 Mak10 Family 2 91 168 86.3 1.6e-24 1 No_clan
Cotton_A_35196_CDS 7 100 6 105 PF03094.15 Mlo Family 3 96 479 124.8 3.1e-36 1 No_clan
Cotton_A_35196_CDS 102 193 97 198 PF03094.15 Mlo Family 123 214 479 105.9 1.6e-30 1 No_clan
Cotton_A_24956_CDS 10 23 9 24 PF07145.15 PAM2 Motif 2 15 18 22.1 7.7e-05 1 No_clan
Cotton_A_35012_CDS 53 159 52 159 PF00931.22 NB-ARC Domain 2 112 252 79.2 2.7e-22 1 CL0023
Cotton_A_30242_CDS 14 468 7 471 PF02458.15 Transferase Family 9 431 434 166.8 6.2e-49 1 CL0149
Cotton_A_21069_CDS 84 351 79 353 PF07714.17 Pkinase_Tyr Domain 6 257 259 157.9 2.8e-46 1 CL0016
Cotton_A_22768_CDS 10 315 10 315 PF16363.5 GDP_Man_Dehyd Domain 1 332 332 229.3 7.6e-68 1 CL0063
Cotton_A_22768_CDS 384 555 383 657 PF04321.17 RmlD_sub_bind Domain 2 164 287 51.0 1.1e-13 1 CL0063
Cotton_A_09055_CDS 66 393 64 393 PF00704.28 Glyco_hydro_18 Domain 3 312 312 274.2 1.9e-81 1 CL0058
Cotton_A_28951_CDS 1 164 1 164 PF00838.17 TCTP Domain 1 166 166 199.5 4.4e-59 1 CL0080
Cotton_A_09217_CDS 13 66 3 66 PF04043.15 PMEI Domain 99 154 154 43.7 3.5e-11 1 No_clan
Cotton_A_14140_CDS 25 175 23 176 PF06703.11 SPC25 Family 3 161 162 113.1 1.1e-32 1 No_clan
Cotton_A_16030_CDS 56 611 56 628 PF11443.8 DUF2828 Family 1 599 632 738.0 7e-222 1 No_clan
Cotton_A_06188_CDS 48 110 48 115 PF00538.19 Linker_histone Domain 1 64 74 57.4 1.4e-15 1 CL0123
Cotton_A_14006_CDS 190 224 190 225 PF00320.27 GATA Domain 1 35 36 60.3 9.6e-17 1 CL0167
Cotton_A_25856_CDS 26 191 25 194 PF03547.18 Mem_trans Family 43 209 387 222.6 5.1e-66 1 CL0064
Cotton_A_31054_CDS 6 98 5 99 PF12766.7 Pyridox_oxase_2 Family 2 99 100 101.2 4e-29 1 CL0336
Cotton_A_25054_CDS 57 81 56 83 PF05678.14 VQ Motif 2 26 28 33.9 1.6e-08 1 No_clan
Cotton_A_16285_CDS 10 36 10 36 PF08513.11 LisH Domain 1 27 27 28.0 1.4e-06 1 CL0561
Cotton_A_16285_CDS 640 670 634 670 PF00400.32 WD40 Repeat 8 37 38 21.0 0.00044 1 CL0186
Cotton_A_16285_CDS 676 713 675 713 PF00400.32 WD40 Repeat 2 38 38 25.9 1.2e-05 1 CL0186
Cotton_A_16285_CDS 720 757 718 757 PF00400.32 WD40 Repeat 3 38 38 21.4 0.00032 1 CL0186
Cotton_A_16285_CDS 805 841 804 841 PF00400.32 WD40 Repeat 2 38 38 19.0 0.0018 1 CL0186
Cotton_A_16285_CDS 900 935 897 935 PF00400.32 WD40 Repeat 4 38 38 14.4 0.053 1 CL0186
Cotton_A_35574_CDS 46 138 46 139 PF14363.6 AAA_assoc Family 1 95 96 74.0 9.5e-21 1 No_clan
Cotton_A_35574_CDS 267 404 266 405 PF00004.29 AAA Domain 2 131 132 59.8 3.5e-16 1 CL0023
Cotton_A_35725_CDS 1 108 1 109 PF00665.26 rve Domain 10 118 119 43.2 4e-11 1 CL0219
Cotton_A_21614_CDS 3 74 3 74 PF00240.23 ubiquitin Domain 1 72 72 117.3 1.8e-34 1 CL0072
Cotton_A_21614_CDS 78 127 78 127 PF01020.17 Ribosomal_L40e Family 1 50 50 108.3 1.2e-31 1 CL0167
Cotton_A_11026_CDS 77 102 77 105 PF01535.20 PPR Family 1 26 31 16.8 0.0059 1 CL0020
Cotton_A_11026_CDS 106 159 102 160 PF13812.6 PPR_3 Repeat 9 62 63 19.5 0.00074 1 CL0020
Cotton_A_11026_CDS 177 220 176 224 PF13041.6 PPR_2 Repeat 2 45 50 32.0 1.1e-07 1 CL0020
Cotton_A_11026_CDS 252 275 249 278 PF01535.20 PPR Family 4 27 31 15.9 0.012 1 CL0020
Cotton_A_11026_CDS 281 310 281 311 PF01535.20 PPR Family 1 30 31 17.8 0.0027 1 CL0020
Cotton_A_11026_CDS 381 406 381 408 PF01535.20 PPR Family 1 26 31 17.3 0.004 1 CL0020
Cotton_A_11026_CDS 479 527 479 528 PF13041.6 PPR_2 Repeat 1 49 50 37.8 1.6e-09 1 CL0020
Cotton_A_11026_CDS 554 576 552 578 PF01535.20 PPR Family 3 25 31 12.2 0.18 1 CL0020
Cotton_A_11026_CDS 620 647 619 647 PF01535.20 PPR Family 3 30 31 11.3 0.33 1 CL0020
Cotton_A_32705_CDS 108 151 107 151 PF13639.6 zf-RING_2 Domain 2 44 44 46.0 5e-12 1 CL0229
Cotton_A_32700_CDS 1 75 1 78 PF00012.20 HSP70 Family 121 193 599 102.6 1.6e-29 1 CL0108
Cotton_A_12988_CDS 77 193 58 194 PF03004.14 Transposase_24 Family 18 141 142 73.2 2.3e-20 1 No_clan
Cotton_A_02475_CDS 3 211 3 212 PF00091.25 Tubulin Domain 1 196 197 235.0 8.5e-70 1 CL0566
Cotton_A_02475_CDS 261 382 261 383 PF03953.17 Tubulin_C Domain 1 125 126 138.7 1.1e-40 1 CL0442
Cotton_A_16293_CDS 7 190 5 190 PF00227.26 Proteasome Domain 3 190 190 138.8 1.5e-40 1 CL0052
Cotton_A_00352_CDS 3 105 1 112 PF05056.12 DUF674 Family 210 315 449 84.8 5.7e-24 1 No_clan
Cotton_A_12974_CDS 824 941 824 942 PF07227.11 PHD_Oberon Family 1 129 130 117.9 2.5e-34 1 CL0390
Cotton_A_12974_CDS 1047 1162 1037 1162 PF16312.5 Oberon_cc Family 13 129 129 121.6 1.9e-35 1 No_clan
Cotton_A_20054_CDS 79 270 79 272 PF07847.12 PCO_ADO Family 1 196 201 217.5 1.2e-64 1 CL0029
Cotton_A_36454_CDS 85 292 84 293 PF00009.27 GTP_EFTU Domain 2 193 194 160.3 4e-47 1 CL0023
Cotton_A_36454_CDS 316 385 316 386 PF03144.25 GTP_EFTU_D2 Domain 1 73 74 45.9 5.6e-12 1 CL0575
Cotton_A_36454_CDS 493 578 492 580 PF00679.24 EFG_C Domain 2 86 89 75.3 2.9e-21 1 CL0437
Cotton_A_31053_CDS 119 252 106 262 PF17874.1 TPR_MalT Domain 58 184 336 38.2 1.1e-09 1 CL0020
Cotton_A_31053_CDS 268 342 267 343 PF13424.6 TPR_12 Repeat 2 76 77 46.9 2.5e-12 1 CL0020
Cotton_A_31053_CDS 438 511 435 511 PF13424.6 TPR_12 Repeat 4 77 77 39.6 4.8e-10 1 CL0020
Cotton_A_23041_CDS 204 372 203 377 PF04055.21 Radical_SAM Domain 2 165 167 63.9 2.2e-17 1 CL0036
Cotton_A_23041_CDS 208 313 204 320 PF13394.6 Fer4_14 Domain 7 109 118 22.6 9.1e-05 1 CL0344
Cotton_A_28999_CDS 94 302 94 302 PF07847.12 PCO_ADO Family 1 201 201 248.9 2.9e-74 1 CL0029
Cotton_A_02024_CDS 88 146 87 149 PF13812.6 PPR_3 Repeat 2 60 63 46.7 2.5e-12 1 CL0020
Cotton_A_23793_CDS 126 154 125 155 PF01535.20 PPR Family 2 30 31 26.2 5.7e-06 1 CL0020
Cotton_A_23793_CDS 159 205 157 206 PF13041.6 PPR_2 Repeat 3 49 50 38.7 8.5e-10 1 CL0020
Cotton_A_23793_CDS 232 260 231 260 PF01535.20 PPR Family 2 30 31 14.2 0.038 1 CL0020
Cotton_A_23793_CDS 339 365 337 365 PF01535.20 PPR Family 4 30 31 20.0 0.00054 1 CL0020
Cotton_A_14777_CDS 137 171 137 172 PF00320.27 GATA Domain 1 35 36 64.0 6.7e-18 1 CL0167
Cotton_A_12561_CDS 25 255 25 255 PF00182.19 Glyco_hydro_19 Domain 1 232 232 386.2 6.6e-116 1 CL0037
Cotton_A_12561_CDS 317 586 314 588 PF00069.25 Pkinase Domain 4 260 264 161.0 3.5e-47 1 CL0016
Cotton_A_23898_CDS 16 176 16 177 PF00071.22 Ras Domain 1 161 162 202.3 3.5e-60 1 CL0023
Cotton_A_23259_CDS 41 155 41 157 PF05195.16 AMP_N Domain 1 120 123 114.8 2e-33 1 CL0356
Cotton_A_23259_CDS 203 426 202 426 PF00557.24 Peptidase_M24 Domain 2 209 209 179.1 8.7e-53 1 No_clan
Cotton_A_20424_CDS 83 138 83 138 PF16450.5 Prot_ATP_ID_OB Domain 1 57 57 30.9 2e-07 1 CL0021
Cotton_A_20424_CDS 196 329 196 330 PF00004.29 AAA Domain 1 131 132 146.8 4.7e-43 1 CL0023
Cotton_A_20424_CDS 353 395 352 396 PF17862.1 AAA_lid_3 Domain 2 44 45 55.9 2.7e-15 1 CL0671
Cotton_A_07433_CDS 47 81 44 90 PF16544.5 STAR_dimer Domain 7 41 53 29.6 3.6e-07 1 No_clan
Cotton_A_12742_CDS 31 84 28 86 PF02701.15 zf-Dof Family 4 57 59 108.2 1.6e-31 1 No_clan
Cotton_A_03232_CDS 19 78 19 84 PF01918.21 Alba Family 1 61 67 66.6 1.2e-18 1 CL0441
Cotton_A_13499_CDS 100 208 75 208 PF00082.22 Peptidase_S8 Domain 198 298 298 72.1 4.4e-20 1 No_clan
Cotton_A_13499_CDS 264 362 264 363 PF17766.1 fn3_6 Domain 1 98 99 87.9 3.8e-25 1 CL0159
Cotton_A_06976_CDS 616 774 615 774 PF14309.6 DUF4378 Family 2 165 165 110.1 1.4e-31 1 No_clan
Cotton_A_03781_CDS 3 127 1 128 PF00931.22 NB-ARC Domain 11 143 252 58.8 4.6e-16 1 CL0023
Cotton_A_18482_CDS 107 314 106 314 PF02190.16 LON_substr_bdg Family 2 208 208 124.6 4.7e-36 1 CL0178
Cotton_A_18482_CDS 467 604 467 609 PF00004.29 AAA Domain 1 127 132 75.4 5.3e-21 1 CL0023
Cotton_A_12743_CDS 74 193 70 214 PF08534.10 Redoxin Domain 5 126 147 58.7 5.1e-16 1 CL0172
Cotton_A_03998_CDS 99 206 97 277 PF03634.13 TCP Family 3 90 156 130.7 6.6e-38 1 No_clan
Cotton_A_13879_CDS 80 151 76 151 PF00111.27 Fer2 Domain 5 78 78 66.8 1.2e-18 1 CL0486
Cotton_A_17784_CDS 14 70 14 70 PF05641.12 Agenet Domain 1 61 61 32.3 1e-07 1 CL0049
Cotton_A_17784_CDS 177 236 177 236 PF05641.12 Agenet Domain 1 61 61 66.1 2.9e-18 1 CL0049
Cotton_A_17784_CDS 337 397 337 397 PF05641.12 Agenet Domain 1 61 61 64.6 8.4e-18 1 CL0049
Cotton_A_17456_CDS 28 122 27 123 PF01657.17 Stress-antifung Family 2 94 95 75.3 4.6e-21 1 No_clan
Cotton_A_17456_CDS 142 233 138 234 PF01657.17 Stress-antifung Family 7 94 95 54.6 1.3e-14 1 No_clan
Cotton_A_08008_CDS 1 61 1 62 PF02953.15 zf-Tim10_DDP Domain 3 63 64 85.8 1.2e-24 1 No_clan
Cotton_A_30206_CDS 34 389 34 389 PF12819.7 Malectin_like Domain 1 336 336 128.1 4e-37 1 CL0202
Cotton_A_31119_CDS 24 89 24 89 PF10172.9 DDA1 Family 1 66 66 89.3 1.5e-25 1 No_clan
Cotton_A_08156_CDS 6 329 6 330 PF16363.5 GDP_Man_Dehyd Domain 1 331 332 237.3 2.9e-70 1 CL0063
Cotton_A_02398_CDS 76 110 55 111 PF07896.12 DUF1674 Family 10 44 50 43.2 4.1e-11 1 No_clan
Cotton_A_02398_CDS 474 518 474 518 PF13639.6 zf-RING_2 Domain 1 44 44 45.6 6.5e-12 1 CL0229
Cotton_A_10438_CDS 2 131 1 140 PF00106.25 adh_short Domain 27 138 195 45.6 5.4e-12 1 CL0063
Cotton_A_28172_CDS 253 571 252 573 PF00152.20 tRNA-synt_2 Domain 2 312 314 250.5 2e-74 1 CL0040
Cotton_A_08208_CDS 92 146 91 147 PF01344.25 Kelch_1 Repeat 2 45 46 32.6 4.2e-08 1 CL0186
Cotton_A_08208_CDS 149 194 149 195 PF01344.25 Kelch_1 Repeat 1 45 46 40.1 1.9e-10 1 CL0186
Cotton_A_08208_CDS 277 330 277 331 PF01344.25 Kelch_1 Repeat 1 45 46 23.8 2.5e-05 1 CL0186
Cotton_A_13502_CDS 66 233 56 237 PF00067.22 p450 Domain 92 264 463 35.5 4.7e-09 1 No_clan
Cotton_A_08792_CDS 30 288 30 288 PF00069.25 Pkinase Domain 1 264 264 250.0 2.5e-74 1 CL0016
Cotton_A_08792_CDS 336 396 334 397 PF13499.6 EF-hand_7 Domain 4 70 71 41.4 1.5e-10 1 CL0220
Cotton_A_08792_CDS 407 467 405 467 PF13499.6 EF-hand_7 Domain 3 71 71 46.1 5e-12 1 CL0220
Cotton_A_08885_CDS 24 76 23 87 PF03018.14 Dirigent Family 2 59 148 50.1 2.5e-13 1 CL0650
Cotton_A_07560_CDS 38 94 38 94 PF11961.8 DUF3475 Family 1 57 57 91.1 3.3e-26 1 No_clan
Cotton_A_07560_CDS 306 393 306 393 PF05003.12 DUF668 Family 1 89 89 102.0 1.9e-29 1 No_clan
Cotton_A_02127_CDS 31 258 30 269 PF00139.19 Lectin_legB Domain 2 235 249 209.7 4.9e-62 1 CL0004
Cotton_A_02127_CDS 356 512 356 524 PF00069.25 Pkinase Domain 1 153 264 122.4 2e-35 1 CL0016
Cotton_A_12352_CDS 7 128 6 129 PF01775.17 Ribosomal_L18A Domain 2 120 121 185.6 2.7e-55 1 No_clan
Cotton_A_23741_CDS 60 194 60 196 PF00179.26 UQ_con Domain 1 138 140 155.6 6e-46 1 CL0208
Cotton_A_01412_CDS 136 444 9 444 PF04484.12 QWRF Family 44 300 300 189.5 1.1e-55 1 No_clan
Cotton_A_07752_CDS 47 480 35 497 PF00067.22 p450 Domain 12 443 463 249.1 7.5e-74 1 No_clan
Cotton_A_11593_CDS 16 140 13 163 PF10358.9 NT-C2 Family 6 121 146 32.7 5.3e-08 1 CL0154
Cotton_A_13052_CDS 9 96 9 105 PF00168.30 C2 Domain 1 91 103 79.9 1.4e-22 1 CL0154
Cotton_A_05759_CDS 105 242 103 246 PF10075.9 CSN8_PSD8_EIF3K Family 3 140 144 100.5 7.9e-29 1 CL0123
Cotton_A_03884_CDS 90 319 90 320 PF06159.13 DUF974 Family 1 244 246 209.5 6.6e-62 1 No_clan
Cotton_A_08804_CDS 147 387 143 388 PF12146.8 Hydrolase_4 Family 5 237 239 47.3 1.5e-12 1 CL0028
Cotton_A_31787_CDS 2 121 1 148 PF08449.11 UAA Family 59 184 302 111.7 3.8e-32 1 CL0184
Cotton_A_31787_CDS 128 171 128 183 PF16712.5 SCAB_CC Family 1 44 168 60.4 1.8e-16 1 No_clan
Cotton_A_05558_CDS 94 217 91 219 PF01529.20 DHHC Family 4 131 134 135.0 1.7e-39 1 No_clan
Cotton_A_01355_CDS 54 141 40 147 PF00141.23 peroxidase Domain 11 94 229 96.3 2.1e-27 1 CL0617
Cotton_A_01428_CDS 434 479 434 481 PF00249.31 Myb_DNA-binding Domain 1 44 46 40.5 2.3e-10 1 CL0123
Cotton_A_01428_CDS 487 531 487 533 PF00249.31 Myb_DNA-binding Domain 1 44 46 42.7 4.5e-11 1 CL0123
Cotton_A_01428_CDS 541 584 540 586 PF00249.31 Myb_DNA-binding Domain 2 44 46 53.1 2.7e-14 1 CL0123
Cotton_A_01428_CDS 595 636 593 637 PF00249.31 Myb_DNA-binding Domain 4 45 46 45.6 5.9e-12 1 CL0123
Cotton_A_19732_CDS 7 68 6 68 PF00226.31 DnaJ Domain 2 63 63 89.2 1.4e-25 1 CL0392
Cotton_A_19732_CDS 137 322 137 331 PF14308.6 DnaJ-X Domain 1 199 211 162.7 7.9e-48 1 No_clan
Cotton_A_02051_CDS 39 91 37 93 PF04770.12 ZF-HD_dimer Family 3 53 55 76.9 1.1e-21 1 No_clan
Cotton_A_16431_CDS 28 235 28 235 PF00314.17 Thaumatin Domain 1 214 214 264.7 5.6e-79 1 CL0293
Cotton_A_03598_CDS 10 262 9 263 PF00139.19 Lectin_legB Domain 2 248 249 267.6 1.1e-79 1 CL0004
Cotton_A_03598_CDS 331 598 331 600 PF00069.25 Pkinase Domain 1 260 264 159.4 1.1e-46 1 CL0016
Cotton_A_01341_CDS 16 122 16 126 PF00072.24 Response_reg Domain 1 108 112 80.1 1.3e-22 1 CL0304
Cotton_A_01341_CDS 213 260 210 260 PF00249.31 Myb_DNA-binding Domain 4 46 46 28.5 1.3e-06 1 CL0123
Cotton_A_11745_CDS 10 57 10 57 PF00319.18 SRF-TF Domain 1 48 48 88.6 1.3e-25 1 No_clan
Cotton_A_11745_CDS 84 172 81 173 PF01486.17 K-box Family 4 92 93 105.1 1.7e-30 1 No_clan
Cotton_A_23927_CDS 24 339 23 340 PF16913.5 PUNUT Family 2 321 322 340.0 1.4e-101 1 CL0184
Cotton_A_12196_CDS 54 523 53 524 PF02990.16 EMP70 Family 2 493 519 527.5 3.4e-158 1 No_clan
Cotton_A_04527_CDS 35 138 33 141 PF07732.15 Cu-oxidase_3 Domain 3 116 119 86.6 1.2e-24 1 CL0026
Cotton_A_04527_CDS 153 289 151 292 PF00394.22 Cu-oxidase Domain 3 157 159 80.8 1.2e-22 1 CL0026
Cotton_A_34589_CDS 73 171 73 172 PF00630.19 Filamin Domain 1 102 103 70.2 2.1e-19 1 CL0159
Cotton_A_34589_CDS 342 402 340 403 PF00076.22 RRM_1 Domain 3 69 70 46.9 1.7e-12 1 CL0221
Cotton_A_01124_CDS 27 66 25 71 PF00646.33 F-box Domain 3 42 48 20.4 0.00035 1 CL0271
Cotton_A_01124_CDS 130 165 128 166 PF01344.25 Kelch_1 Repeat 12 45 46 26.8 2.8e-06 1 CL0186
Cotton_A_24624_CDS 99 135 96 146 PF00170.21 bZIP_1 Family 4 39 64 31.6 1.3e-07 1 CL0018
Cotton_A_24624_CDS 187 261 186 262 PF14144.6 DOG1 Family 2 76 77 100.6 4.2e-29 1 No_clan
Cotton_A_23863_CDS 5 165 5 166 PF00071.22 Ras Domain 1 161 162 220.4 9.5e-66 1 CL0023
Cotton_A_25110_CDS 44 138 43 140 PF00153.27 Mito_carr Family 2 94 97 69.7 1.5e-19 1 No_clan
Cotton_A_25110_CDS 156 240 151 243 PF00153.27 Mito_carr Family 7 94 97 82.8 1.2e-23 1 No_clan
Cotton_A_25110_CDS 247 339 245 342 PF00153.27 Mito_carr Family 3 94 97 78.4 3e-22 1 No_clan
Cotton_A_19037_CDS 52 135 52 135 PF01777.18 Ribosomal_L27e Family 1 85 85 105.4 1.4e-30 1 No_clan
Cotton_A_12511_CDS 7 68 6 69 PF13499.6 EF-hand_7 Domain 2 70 71 54.6 1.1e-14 1 CL0220
Cotton_A_14865_CDS 77 166 77 178 PF01453.24 B_lectin Domain 1 94 105 76.5 2e-21 1 No_clan
Cotton_A_14865_CDS 239 317 208 318 PF00954.20 S_locus_glycop Domain 36 110 111 30.2 5e-07 1 No_clan
Cotton_A_14865_CDS 334 398 334 403 PF08276.11 PAN_2 Domain 1 60 67 21.5 0.00019 1 CL0168
Cotton_A_14865_CDS 518 791 515 794 PF00069.25 Pkinase Domain 4 260 264 177.5 3.1e-52 1 CL0016
Cotton_A_24837_CDS 186 280 185 305 PF10607.9 CLTH Domain 2 101 148 88.0 5.5e-25 1 No_clan
Cotton_A_19778_CDS 69 213 69 217 PF00182.19 Glyco_hydro_19 Domain 1 157 232 138.6 2.9e-40 1 CL0037
Cotton_A_19778_CDS 219 267 213 267 PF00182.19 Glyco_hydro_19 Domain 184 232 232 41.9 1e-10 1 CL0037
Cotton_A_01537_CDS 132 180 129 193 PF00170.21 bZIP_1 Family 5 53 64 51.9 5.8e-14 1 CL0018
Cotton_A_06032_CDS 6 102 5 118 PF00168.30 C2 Domain 3 95 103 32.7 6.9e-08 1 CL0154
Cotton_A_31917_CDS 43 128 43 129 PF08700.11 Vps51 Family 1 86 87 80.1 9.2e-23 1 CL0295
Cotton_A_20929_CDS 225 380 207 389 PF00201.18 UDPGT Family 264 403 499 57.4 1.2e-15 1 CL0113
Cotton_A_40796_CDS 96 196 96 196 PF13344.6 Hydrolase_6 Domain 1 101 101 108.9 1.1e-31 1 CL0137
Cotton_A_40796_CDS 291 364 290 366 PF13242.6 Hydrolase_like Domain 2 73 75 68.0 5.4e-19 1 CL0137
Cotton_A_29576_CDS 13 35 12 36 PF13912.6 zf-C2H2_6 Domain 2 24 27 20.7 0.0003 1 CL0361
Cotton_A_29576_CDS 220 244 219 245 PF13912.6 zf-C2H2_6 Domain 2 26 27 37.6 1.5e-09 1 CL0361
Cotton_A_29576_CDS 303 327 303 329 PF13912.6 zf-C2H2_6 Domain 1 25 27 48.6 5.5e-13 1 CL0361
Cotton_A_09219_CDS 27 76 27 76 PF00010.26 HLH Domain 1 52 53 20.9 0.00026 1 No_clan
Cotton_A_13570_CDS 54 148 53 150 PF03980.14 Nnf1 Family 2 108 110 32.3 9.9e-08 1 No_clan
Cotton_A_17209_CDS 164 254 163 254 PF04576.15 Zein-binding Family 2 92 92 112.7 7.5e-33 1 No_clan
Cotton_A_20748_CDS 65 265 64 266 PF01633.20 Choline_kinase Family 3 212 213 218.7 6.3e-65 1 CL0016
Cotton_A_36283_CDS 13 77 13 77 PF18052.1 Rx_N Domain 1 65 93 56.3 3e-15 1 No_clan
Cotton_A_17530_CDS 25 98 23 99 PF14144.6 DOG1 Family 3 76 77 73.4 1.3e-20 1 No_clan
Cotton_A_24295_CDS 19 186 14 186 PF04525.12 LOR Domain 12 187 187 101.5 4.1e-29 1 CL0395
Cotton_A_26520_CDS 41 139 41 139 PF02922.18 CBM_48 Domain 1 84 84 49.3 4.7e-13 1 CL0369
Cotton_A_26520_CDS 209 321 209 348 PF00128.24 Alpha-amylase Domain 1 92 337 45.1 9.6e-12 1 CL0058
Cotton_A_41068_CDS 42 340 42 343 PF00657.22 Lipase_GDSL Family 1 196 200 46.3 4.6e-12 1 CL0264
Cotton_A_22069_CDS 81 244 75 244 PF02622.15 DUF179 Family 7 160 160 94.3 7.2e-27 1 No_clan
Cotton_A_04394_CDS 161 377 159 402 PF00931.22 NB-ARC Domain 3 222 252 98.2 4.3e-28 1 CL0023
Cotton_A_04394_CDS 532 588 530 589 PF13855.6 LRR_8 Repeat 3 60 61 28.4 1e-06 1 CL0022
Cotton_A_13648_CDS 6 72 2 94 PF14226.6 DIOX_N Family 13 80 118 30.7 4.2e-07 1 CL0029
Cotton_A_13648_CDS 150 244 144 246 PF03171.20 2OG-FeII_Oxy Domain 5 99 101 57.7 1.3e-15 1 CL0029
Cotton_A_33552_CDS 82 137 82 138 PF01849.18 NAC Family 1 56 57 79.1 1.8e-22 1 No_clan
Cotton_A_40027_CDS 101 462 101 463 PF05684.12 DUF819 Family 1 377 378 402.9 1.3e-120 1 CL0064
Cotton_A_08032_CDS 47 121 47 125 PF00067.22 p450 Domain 1 77 463 36.7 2.1e-09 1 No_clan
Cotton_A_14791_CDS 81 501 80 502 PF00854.21 PTR2 Family 2 394 395 279.2 4.9e-83 1 CL0015
Cotton_A_02692_CDS 96 149 94 150 PF00046.29 Homeodomain Domain 3 56 57 61.9 3.6e-17 1 CL0123
Cotton_A_02692_CDS 151 192 151 193 PF02183.18 HALZ Coiled-coil 1 42 43 53.9 1.5e-14 1 No_clan
Cotton_A_33266_CDS 469 492 449 492 PF00400.32 WD40 Repeat 15 38 38 17.1 0.0072 1 CL0186
Cotton_A_00035_CDS 270 401 270 403 PF00004.29 AAA Domain 1 130 132 154.3 2.3e-45 1 CL0023
Cotton_A_00035_CDS 425 468 425 469 PF17862.1 AAA_lid_3 Domain 1 44 45 45.6 4.3e-12 1 CL0671
Cotton_A_00035_CDS 484 673 482 673 PF01434.18 Peptidase_M41 Domain 3 191 191 229.7 2.5e-68 1 CL0126
Cotton_A_40728_CDS 45 203 44 203 PF00106.25 adh_short Domain 2 154 195 111.0 4.7e-32 1 CL0063
Cotton_A_27091_CDS 28 171 28 171 PF00810.18 ER_lumen_recept Family 1 147 147 181.8 1.2e-53 1 CL0141
Cotton_A_18267_CDS 100 940 100 942 PF05911.11 FPP Coiled-coil 1 865 867 1121.9 0 1 No_clan
Cotton_A_18748_CDS 36 74 34 75 PF08263.12 LRRNT_2 Family 4 40 41 31.8 1.3e-07 1 No_clan
Cotton_A_18748_CDS 172 192 172 193 PF00560.33 LRR_1 Repeat 1 21 23 10.9 0.58 1 CL0022
Cotton_A_18748_CDS 325 383 323 383 PF13855.6 LRR_8 Repeat 3 61 61 28.6 8.7e-07 1 CL0022
Cotton_A_18748_CDS 420 479 419 479 PF13855.6 LRR_8 Repeat 2 61 61 36.6 2.8e-09 1 CL0022
Cotton_A_18748_CDS 635 650 633 651 PF13516.6 LRR_6 Repeat 3 18 24 10.2 0.64 1 CL0022
Cotton_A_18748_CDS 660 719 659 719 PF13855.6 LRR_8 Repeat 2 61 61 33.1 3.4e-08 1 CL0022
Cotton_A_18748_CDS 850 1115 847 1118 PF00069.25 Pkinase Domain 4 258 264 114.3 6.3e-33 1 CL0016
Cotton_A_26407_CDS 30 83 29 128 PF13947.6 GUB_WAK_bind Domain 2 55 106 33.6 5.3e-08 1 No_clan
Cotton_A_15819_CDS 41 222 31 222 PF00316.20 FBPase Domain 19 189 189 136.9 5.2e-40 1 CL0171
Cotton_A_02087_CDS 49 279 46 282 PF01151.18 ELO Family 4 246 250 169.9 6.7e-50 1 No_clan
Cotton_A_01452_CDS 8 601 7 601 PF02705.16 K_trans Family 2 534 534 527.6 3.1e-158 1 CL0062
Cotton_A_24945_CDS 15 138 15 138 PF02365.15 NAM Family 1 126 126 123.5 9.4e-36 1 No_clan
Cotton_A_29556_CDS 21 101 21 102 PF05495.12 zf-CHY Domain 1 74 75 77.2 9.8e-22 1 No_clan
Cotton_A_29556_CDS 155 198 154 199 PF13639.6 zf-RING_2 Domain 2 43 44 29.9 5.3e-07 1 CL0229
Cotton_A_29556_CDS 203 261 203 261 PF14599.6 zinc_ribbon_6 Domain 1 59 59 92.0 1.7e-26 1 No_clan
Cotton_A_03157_CDS 87 124 87 124 PF06596.11 PsbX Family 1 39 39 64.5 6.4e-18 1 No_clan
Cotton_A_21014_CDS 50 157 50 157 PF00011.21 HSP20 Family 1 102 102 100.0 7.1e-29 1 CL0190
Cotton_A_02357_CDS 76 140 76 140 PF03946.14 Ribosomal_L11_N Domain 1 65 65 107.0 3e-31 1 No_clan
Cotton_A_02357_CDS 145 213 145 213 PF00298.19 Ribosomal_L11 Domain 1 70 70 87.9 4.6e-25 1 No_clan
Cotton_A_28595_CDS 35 162 34 163 PF08240.12 ADH_N Domain 2 108 109 85.8 1.7e-24 1 CL0296
Cotton_A_28595_CDS 206 328 205 340 PF00107.26 ADH_zinc_N Family 2 118 130 85.3 3.3e-24 1 CL0063
Cotton_A_17253_CDS 7 64 6 73 PF06364.12 DUF1068 Family 2 60 168 61.3 9.8e-17 1 No_clan
Cotton_A_06687_CDS 23 60 22 60 PF13713.6 BRX_N Domain 2 37 37 62.8 1.8e-17 1 No_clan
Cotton_A_06687_CDS 137 167 136 171 PF08381.11 BRX Domain 2 32 56 43.5 1.5e-11 1 No_clan
Cotton_A_31710_CDS 5 76 3 76 PF01105.24 EMP24_GP25L Domain 111 182 182 37.3 2.5e-09 1 CL0521
Cotton_A_19727_CDS 56 81 28 82 PF14364.6 DUF4408 Family 9 30 33 21.7 0.00012 1 No_clan
Cotton_A_36469_CDS 65 91 49 92 PF14392.6 zf-CCHC_4 Domain 22 48 49 27.5 2e-06 1 CL0511
Cotton_A_25721_CDS 201 318 199 320 PF03004.14 Transposase_24 Family 19 140 142 53.8 2.2e-14 1 No_clan
Cotton_A_38258_CDS 23 91 21 102 PF00564.24 PB1 Domain 5 71 84 31.2 1.6e-07 1 CL0072
Cotton_A_38258_CDS 281 342 278 342 PF03108.15 DBD_Tnp_Mut Family 6 67 67 67.3 8.4e-19 1 CL0274
Cotton_A_38258_CDS 480 562 472 565 PF10551.9 MULE Domain 10 93 96 53.2 3e-14 1 CL0219
Cotton_A_38258_CDS 724 752 707 754 PF04434.17 SWIM Domain 10 38 40 27.4 1.9e-06 1 No_clan
Cotton_A_24160_CDS 68 223 63 259 PF01425.21 Amidase Family 43 196 451 175.5 1.8e-51 1 No_clan
Cotton_A_24160_CDS 328 454 282 454 PF01425.21 Amidase Family 312 451 451 29.0 5.3e-07 1 No_clan
Cotton_A_24160_CDS 522 554 521 554 PF00515.28 TPR_1 Repeat 2 34 34 29.3 4.7e-07 1 CL0020
Cotton_A_03861_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 58.6 5.2e-16 1 CL0123
Cotton_A_03861_CDS 67 111 67 112 PF00249.31 Myb_DNA-binding Domain 1 45 46 52.5 4.2e-14 1 CL0123
Cotton_A_37637_CDS 72 290 70 290 PF10230.9 LIDHydrolase Family 3 238 266 187.8 2.6e-55 1 CL0028
Cotton_A_22156_CDS 291 540 291 540 PF07714.17 Pkinase_Tyr Domain 1 259 259 244.7 9.4e-73 1 CL0016
Cotton_A_01715_CDS 38 89 38 92 PF13857.6 Ank_5 Repeat 1 53 56 38.9 7.5e-10 1 CL0465
Cotton_A_01715_CDS 171 256 157 256 PF07714.17 Pkinase_Tyr Domain 29 114 259 34.9 9.6e-09 1 CL0016
Cotton_A_38048_CDS 43 84 42 85 PF06839.12 zf-GRF Domain 2 44 45 33.5 3.3e-08 1 CL0167
Cotton_A_03370_CDS 198 328 197 328 PF02469.22 Fasciclin Domain 2 128 128 60.8 1.5e-16 1 No_clan
Cotton_A_04084_CDS 134 184 134 184 PF08711.11 Med26 Domain 1 53 53 49.0 4.5e-13 1 No_clan
Cotton_A_02410_CDS 24 167 23 168 PF04099.12 Sybindin Family 2 142 143 158.8 7.9e-47 1 CL0212
Cotton_A_34736_CDS 32 128 31 129 PF01657.17 Stress-antifung Family 2 94 95 84.4 6.5e-24 1 No_clan
Cotton_A_34736_CDS 148 243 144 246 PF01657.17 Stress-antifung Family 7 92 95 43.2 4.5e-11 1 No_clan
Cotton_A_34736_CDS 345 441 341 450 PF07714.17 Pkinase_Tyr Domain 5 106 259 58.5 6e-16 1 CL0016
Cotton_A_30752_CDS 42 142 20 154 PF00293.28 NUDIX Domain 13 120 131 40.4 2.7e-10 1 CL0261
Cotton_A_11040_CDS 44 302 44 302 PF00069.25 Pkinase Domain 1 264 264 252.8 3.5e-75 1 CL0016
Cotton_A_11040_CDS 350 409 348 411 PF13499.6 EF-hand_7 Domain 4 69 71 48.3 1e-12 1 CL0220
Cotton_A_11040_CDS 420 481 419 481 PF13499.6 EF-hand_7 Domain 2 71 71 54.7 1e-14 1 CL0220
Cotton_A_00559_CDS 1 112 1 112 PF02403.22 Seryl_tRNA_N Domain 1 108 108 82.4 2.4e-23 1 CL0298
Cotton_A_00559_CDS 221 408 221 408 PF00587.25 tRNA-synt_2b Domain 1 179 179 125.6 2e-36 1 CL0040
Cotton_A_07957_CDS 19 228 7 238 PF00931.22 NB-ARC Domain 22 213 252 89.3 2.2e-25 1 CL0023
Cotton_A_05357_CDS 158 225 157 229 PF13837.6 Myb_DNA-bind_4 Domain 3 73 90 63.7 1.5e-17 1 CL0123
Cotton_A_20687_CDS 56 309 56 312 PF00290.20 Trp_syntA Domain 1 255 259 321.7 2.2e-96 1 CL0036
Cotton_A_19074_CDS 13 555 12 556 PF03321.13 GH3 Family 2 526 527 599.6 6.1e-180 1 CL0378
Cotton_A_10486_CDS 9 618 9 618 PF00012.20 HSP70 Family 1 599 599 878.7 1.6e-264 1 CL0108
Cotton_A_11965_CDS 312 586 311 586 PF08637.10 NCA2 Family 2 289 289 238.7 7.1e-71 1 No_clan
Cotton_A_02318_CDS 315 362 315 362 PF10699.9 HAP2-GCS1 Domain 1 48 48 67.9 5.5e-19 1 No_clan
Cotton_A_26190_CDS 160 258 139 262 PF12796.7 Ank_2 Repeat 1 65 83 40.1 4.2e-10 1 CL0465
Cotton_A_26190_CDS 319 383 316 387 PF12796.7 Ank_2 Repeat 18 77 83 52.0 8.2e-14 1 CL0465
Cotton_A_26190_CDS 393 424 392 425 PF00023.30 Ank Repeat 2 31 32 20.1 0.00062 1 CL0465
Cotton_A_26190_CDS 506 612 505 612 PF13962.6 PGG Domain 2 116 116 95.8 1.4e-27 1 No_clan
Cotton_A_39949_CDS 120 326 118 326 PF00566.18 RabGAP-TBC Family 3 215 215 189.8 4.9e-56 1 No_clan
Cotton_A_19593_CDS 16 177 16 178 PF00071.22 Ras Domain 1 161 162 191.9 5.4e-57 1 CL0023
Cotton_A_18219_CDS 1 169 1 198 PF03094.15 Mlo Family 287 455 479 267.8 1.4e-79 1 No_clan
Cotton_A_29945_CDS 48 318 47 318 PF04190.13 DUF410 Family 2 255 255 233.8 2.8e-69 1 No_clan
Cotton_A_26752_CDS 49 112 24 123 PF05916.11 Sld5 Family 26 93 109 23.3 6.8e-05 1 No_clan
Cotton_A_17390_CDS 23 58 19 75 PF00403.26 HMA Domain 6 41 62 34.6 1.9e-08 1 No_clan
Cotton_A_07513_CDS 351 722 350 722 PF03081.15 Exo70 Family 3 376 376 371.0 6.5e-111 1 CL0295
Cotton_A_13795_CDS 31 430 28 438 PF01490.18 Aa_trans Family 4 401 409 181.7 1.9e-53 1 CL0062
Cotton_A_34658_CDS 64 202 64 206 PF00310.21 GATase_2 Domain 1 148 420 138.4 2.6e-40 1 CL0052
Cotton_A_06566_CDS 231 310 230 310 PF12872.7 OST-HTH Domain 2 72 72 49.9 2e-13 1 CL0123
Cotton_A_06566_CDS 349 396 346 406 PF00076.22 RRM_1 Domain 10 60 70 30.0 3.4e-07 1 CL0221
Cotton_A_00373_CDS 50 329 47 329 PF07714.17 Pkinase_Tyr Domain 4 259 259 163.1 7.4e-48 1 CL0016
Cotton_A_00338_CDS 27 70 26 70 PF08263.12 LRRNT_2 Family 2 41 41 25.9 9.2e-06 1 No_clan
Cotton_A_00338_CDS 324 579 320 581 PF07714.17 Pkinase_Tyr Domain 5 257 259 90.7 8.9e-26 1 CL0016
Cotton_A_26558_CDS 56 122 56 123 PF00538.19 Linker_histone Domain 1 73 74 64.4 9e-18 1 CL0123
Cotton_A_28477_CDS 106 158 106 158 PF02861.20 Clp_N Family 1 53 53 62.7 2.5e-17 1 No_clan
Cotton_A_28477_CDS 182 233 181 233 PF02861.20 Clp_N Family 2 53 53 66.3 1.9e-18 1 No_clan
Cotton_A_28477_CDS 309 425 308 442 PF00004.29 AAA Domain 2 112 132 53.4 3.4e-14 1 CL0023
Cotton_A_28477_CDS 447 545 447 547 PF17871.1 AAA_lid_9 Domain 1 102 104 103.2 6.4e-30 1 CL0671
Cotton_A_28477_CDS 643 817 643 818 PF07724.14 AAA_2 Domain 1 170 171 187.1 2.8e-55 1 CL0023
Cotton_A_28477_CDS 824 904 824 904 PF10431.9 ClpB_D2-small Domain 1 81 81 83.6 7.8e-24 1 CL0671
Cotton_A_33968_CDS 158 214 157 215 PF03106.15 WRKY Domain 2 58 59 84.0 6.3e-24 1 CL0274
Cotton_A_27356_CDS 98 257 98 259 PF00916.20 Sulfate_transp Family 1 158 380 200.0 4.9e-59 1 CL0062
Cotton_A_27356_CDS 260 456 255 458 PF00916.20 Sulfate_transp Family 182 378 380 199.4 7.2e-59 1 CL0062
Cotton_A_27356_CDS 510 628 510 628 PF01740.21 STAS Domain 1 117 117 113.0 5.7e-33 1 CL0502
Cotton_A_24185_CDS 18 139 17 139 PF00903.25 Glyoxalase Domain 2 128 128 40.7 2.4e-10 1 CL0104
Cotton_A_31530_CDS 42 287 40 287 PF00141.23 peroxidase Domain 3 229 229 244.1 1.5e-72 1 CL0617
Cotton_A_12713_CDS 28 442 28 442 PF00909.21 Ammonium_transp Family 1 399 399 273.5 2.3e-81 1 No_clan
Cotton_A_29883_CDS 189 244 185 260 PF09409.10 PUB Domain 6 61 82 52.9 2.6e-14 1 No_clan
Cotton_A_35698_CDS 6 78 6 80 PF04564.15 U-box Domain 1 71 73 67.5 8.8e-19 1 CL0229
Cotton_A_16521_CDS 194 502 171 502 PF00225.23 Kinesin Domain 30 333 333 363.0 1.2e-108 1 CL0023
Cotton_A_30864_CDS 39 386 38 405 PF05208.13 ALG3 Family 2 340 358 363.5 1.4e-108 1 CL0111
Cotton_A_17079_CDS 48 90 48 90 PF03470.14 zf-XS Domain 1 43 43 78.1 4.3e-22 1 No_clan
Cotton_A_17079_CDS 121 229 120 229 PF03468.14 XS Domain 2 113 113 117.1 4.6e-34 1 CL0221
Cotton_A_17079_CDS 506 636 506 636 PF03469.14 XH Domain 1 131 131 189.7 1.8e-56 1 No_clan
Cotton_A_11278_CDS 14 231 13 231 PF00244.20 14-3-3 Domain 2 222 222 341.3 2.2e-102 1 No_clan
Cotton_A_22918_CDS 88 279 86 279 PF01997.16 Translin Family 3 205 205 172.4 1.2e-50 1 No_clan
Cotton_A_20850_CDS 42 500 42 500 PF00083.24 Sugar_tr Family 1 452 452 373.3 1.7e-111 1 CL0015
Cotton_A_06695_CDS 149 191 149 192 PF06203.14 CCT Motif 1 43 44 59.4 2.6e-16 1 CL0281
Cotton_A_24306_CDS 29 139 26 139 PF04398.12 DUF538 Family 4 112 112 115.3 1.8e-33 1 No_clan
Cotton_A_17140_CDS 18 40 17 40 PF01754.16 zf-A20 Family 2 24 24 44.4 1.1e-11 1 No_clan
Cotton_A_17140_CDS 107 143 107 144 PF01428.16 zf-AN1 Family 1 39 40 40.5 2.3e-10 1 No_clan
Cotton_A_14067_CDS 315 360 312 360 PF00010.26 HLH Domain 5 53 53 37.7 1.5e-09 1 No_clan
Cotton_A_00152_CDS 378 484 360 490 PF01544.18 CorA Family 189 283 292 28.2 1.1e-06 1 No_clan
Cotton_A_01269_CDS 12 211 10 211 PF00493.23 MCM Domain 3 224 224 228.2 6.4e-68 1 CL0023
Cotton_A_01269_CDS 229 318 228 319 PF17855.1 MCM_lid Domain 2 86 87 90.8 5.4e-26 1 CL0671
Cotton_A_25462_CDS 193 442 190 443 PF13839.6 PC-Esterase Family 27 282 283 190.0 7.4e-56 1 CL0264
Cotton_A_30708_CDS 305 396 304 401 PF00566.18 RabGAP-TBC Family 2 93 215 64.5 1e-17 1 No_clan
Cotton_A_14299_CDS 162 193 153 193 PF00400.32 WD40 Repeat 9 38 38 19.0 0.0018 1 CL0186
Cotton_A_14299_CDS 212 233 197 234 PF00400.32 WD40 Repeat 16 37 38 13.3 0.12 1 CL0186
Cotton_A_36818_CDS 16 232 11 232 PF00230.20 MIP Family 6 227 227 250.0 2.2e-74 1 No_clan
Cotton_A_23804_CDS 23 124 18 126 PF00223.19 PsaA_PsaB Family 73 172 718 132.0 2.2e-38 1 No_clan
Cotton_A_34118_CDS 84 161 76 162 PF18036.1 Ubiquitin_4 Domain 11 88 89 83.8 6.3e-24 1 CL0072
Cotton_A_07669_CDS 21 145 14 145 PF08613.11 Cyclin Family 35 161 161 137.0 7.2e-40 1 CL0065
Cotton_A_33954_CDS 43 426 42 427 PF01490.18 Aa_trans Family 2 408 409 207.3 3.1e-61 1 CL0062
Cotton_A_15467_CDS 23 61 22 61 PF08263.12 LRRNT_2 Family 2 41 41 52.5 4.2e-14 1 No_clan
Cotton_A_15467_CDS 93 105 91 106 PF13516.6 LRR_6 Repeat 3 15 24 12.1 0.16 1 CL0022
Cotton_A_15467_CDS 193 214 193 215 PF00560.33 LRR_1 Repeat 1 22 23 10.9 0.61 1 CL0022
Cotton_A_15467_CDS 315 336 314 336 PF00560.33 LRR_1 Repeat 2 23 23 11.0 0.55 1 CL0022
Cotton_A_23810_CDS 88 414 88 422 PF00295.17 Glyco_hydro_28 Domain 1 318 325 308.7 4.1e-92 1 CL0268
Cotton_A_04680_CDS 42 60 42 60 PF08137.12 DVL Family 1 19 19 45.1 6.6e-12 1 No_clan
Cotton_A_34933_CDS 65 206 64 206 PF00190.22 Cupin_1 Domain 2 143 151 159.4 4.6e-47 1 CL0029
Cotton_A_00902_CDS 39 151 37 153 PF07732.15 Cu-oxidase_3 Domain 3 117 119 139.4 5.3e-41 1 CL0026
Cotton_A_00902_CDS 164 314 163 316 PF00394.22 Cu-oxidase Domain 2 157 159 138.8 1.6e-40 1 CL0026
Cotton_A_00902_CDS 428 558 425 560 PF07731.14 Cu-oxidase_2 Domain 3 135 137 135.4 1.1e-39 1 CL0026
Cotton_A_09576_CDS 54 261 53 263 PF17177.4 PPR_long Domain 2 210 212 268.8 2.6e-80 1 CL0020
Cotton_A_09576_CDS 300 527 299 527 PF16953.5 PRORP Domain 2 241 241 205.9 6.4e-61 1 CL0280
Cotton_A_28323_CDS 1 417 1 417 PF00854.21 PTR2 Family 15 395 395 329.8 2e-98 1 CL0015
Cotton_A_38717_CDS 36 94 36 96 PF01221.18 Dynein_light Domain 1 61 86 86.0 1.6e-24 1 No_clan
Cotton_A_24490_CDS 46 157 34 160 PF00293.28 NUDIX Domain 16 127 131 49.6 3.9e-13 1 CL0261
Cotton_A_00636_CDS 8 132 7 133 PF06916.13 DUF1279 Family 2 91 92 92.4 2e-26 1 No_clan
Cotton_A_21097_CDS 209 469 209 469 PF03000.14 NPH3 Family 1 258 258 280.5 1.4e-83 1 No_clan
Cotton_A_40383_CDS 31 137 31 137 PF05938.11 Self-incomp_S1 Family 1 104 104 98.6 2.5e-28 1 No_clan
Cotton_A_02991_CDS 5 59 2 60 PF10440.9 WIYLD Domain 6 60 61 79.9 9e-23 1 CL0214
Cotton_A_02991_CDS 482 628 482 628 PF05033.16 Pre-SET Family 1 109 109 63.7 2.1e-17 1 No_clan
Cotton_A_02991_CDS 648 765 648 765 PF00856.28 SET Family 1 169 169 63.4 3.2e-17 1 No_clan
Cotton_A_27776_CDS 5 157 4 157 PF00582.26 Usp Domain 3 141 141 106.1 2.1e-30 1 CL0039
Cotton_A_12495_CDS 43 206 43 206 PF04833.15 COBRA Family 1 165 165 241.4 4.4e-72 1 No_clan
Cotton_A_09205_CDS 20 262 20 262 PF13561.6 adh_short_C2 Domain 1 234 234 204.9 1.3e-60 1 CL0063
Cotton_A_38394_CDS 76 128 75 129 PF04770.12 ZF-HD_dimer Family 2 54 55 105.0 1.8e-30 1 No_clan
Cotton_A_10145_CDS 11 108 11 109 PF03195.14 LOB Family 1 98 99 131.8 1e-38 1 No_clan
Cotton_A_03771_CDS 9 97 7 99 PF14368.6 LTP_2 Family 3 93 97 41.7 9.4e-11 1 CL0482
Cotton_A_16415_CDS 75 204 75 205 PF03641.14 Lysine_decarbox Family 1 131 132 152.4 6.8e-45 1 CL0349
Cotton_A_31942_CDS 59 157 58 158 PF01453.24 B_lectin Domain 2 104 105 105.0 2.7e-30 1 No_clan
Cotton_A_31942_CDS 187 294 187 295 PF00954.20 S_locus_glycop Domain 1 110 111 94.4 6e-27 1 No_clan
Cotton_A_31942_CDS 352 389 312 389 PF08276.11 PAN_2 Domain 27 67 67 40.0 3.2e-10 1 CL0168
Cotton_A_31942_CDS 506 775 505 775 PF07714.17 Pkinase_Tyr Domain 2 259 259 162.5 1.1e-47 1 CL0016
Cotton_A_04164_CDS 39 149 37 150 PF06320.13 GCN5L1 Family 3 113 114 141.4 1.2e-41 1 No_clan
Cotton_A_00999_CDS 202 255 182 256 PF00364.22 Biotin_lipoyl Domain 19 72 73 30.2 3e-07 1 CL0105
Cotton_A_02241_CDS 47 140 47 154 PF06136.13 DUF966 Family 1 94 377 217.2 5.6e-64 1 No_clan
Cotton_A_02241_CDS 152 353 140 353 PF06136.13 DUF966 Family 137 342 377 102.1 5.3e-29 1 No_clan
Cotton_A_00396_CDS 36 96 18 99 PF15511.6 CENP-T_C Domain 19 79 108 34.4 1.8e-08 1 CL0012
Cotton_A_05839_CDS 38 75 36 76 PF08263.12 LRRNT_2 Family 3 40 41 48.0 1.1e-12 1 No_clan
Cotton_A_05839_CDS 232 253 231 253 PF00560.33 LRR_1 Repeat 2 23 23 9.8 1.3 1 CL0022
Cotton_A_05839_CDS 255 315 255 315 PF13855.6 LRR_8 Repeat 1 61 61 40.4 1.8e-10 1 CL0022
Cotton_A_21729_CDS 11 65 11 67 PF00412.22 LIM Domain 1 56 58 40.8 1.9e-10 1 CL0167
Cotton_A_21729_CDS 109 164 109 165 PF00412.22 LIM Domain 1 57 58 48.3 8.5e-13 1 CL0167
Cotton_A_30970_CDS 34 66 34 66 PF02298.17 Cu_bind_like Domain 1 35 84 35.2 8.9e-09 1 CL0026
Cotton_A_29884_CDS 486 1248 467 1252 PF11573.8 Med23 Family 329 1074 1302 91.2 3.7e-26 1 No_clan
Cotton_A_21768_CDS 178 284 178 293 PF03168.13 LEA_2 Domain 1 100 101 36.5 5.4e-09 1 CL0159
Cotton_A_12125_CDS 132 296 101 297 PF01025.19 GrpE Family 15 165 166 169.5 4.8e-50 1 No_clan
Cotton_A_14646_CDS 25 191 21 209 PF00780.22 CNH Family 6 172 275 29.2 6.9e-07 1 No_clan
Cotton_A_29254_CDS 354 430 353 430 PF00312.22 Ribosomal_S15 Domain 3 81 81 83.3 1.1e-23 1 CL0600
Cotton_A_19300_CDS 32 69 30 69 PF08263.12 LRRNT_2 Family 3 41 41 27.4 3.1e-06 1 No_clan
Cotton_A_19300_CDS 181 240 180 240 PF13855.6 LRR_8 Repeat 2 61 61 34.8 1e-08 1 CL0022
Cotton_A_19300_CDS 303 362 302 362 PF13855.6 LRR_8 Repeat 2 61 61 43.4 2.1e-11 1 CL0022
Cotton_A_19300_CDS 375 391 375 418 PF00560.33 LRR_1 Repeat 1 18 23 9.9 1.3 1 CL0022
Cotton_A_19300_CDS 424 482 422 482 PF13855.6 LRR_8 Repeat 3 61 61 30.2 2.7e-07 1 CL0022
Cotton_A_19300_CDS 500 560 499 560 PF13855.6 LRR_8 Repeat 2 61 61 37.4 1.5e-09 1 CL0022
Cotton_A_11522_CDS 65 139 59 140 PF03330.18 DPBB_1 Domain 7 82 83 41.6 1.1e-10 1 CL0199
Cotton_A_39606_CDS 1 152 1 152 PF14009.6 DUF4228 Family 1 179 179 65.5 7.6e-18 1 No_clan
Cotton_A_33069_CDS 197 226 196 226 PF01535.20 PPR Family 2 31 31 17.4 0.0037 1 CL0020
Cotton_A_33069_CDS 265 314 265 314 PF13041.6 PPR_2 Repeat 1 50 50 34.3 2e-08 1 CL0020
Cotton_A_33069_CDS 335 384 335 384 PF13041.6 PPR_2 Repeat 1 50 50 54.4 1.1e-14 1 CL0020
Cotton_A_33069_CDS 407 453 405 453 PF13041.6 PPR_2 Repeat 3 49 50 59.2 3.4e-16 1 CL0020
Cotton_A_33069_CDS 472 504 471 504 PF12854.7 PPR_1 Repeat 2 34 34 32.5 5.1e-08 1 CL0020
Cotton_A_33069_CDS 515 541 513 543 PF01535.20 PPR Family 3 29 31 16.4 0.0079 1 CL0020
Cotton_A_15203_CDS 92 476 92 484 PF00854.21 PTR2 Family 1 387 395 285.2 7.3e-85 1 CL0015
Cotton_A_33840_CDS 50 431 47 435 PF00999.21 Na_H_Exchanger Family 3 375 381 129.7 1.1e-37 1 CL0064
Cotton_A_08346_CDS 21 156 20 156 PF13302.7 Acetyltransf_3 Domain 2 138 138 91.8 5.7e-26 1 CL0257
Cotton_A_00401_CDS 19 141 19 142 PF00241.20 Cofilin_ADF Domain 1 120 121 125.5 9.2e-37 1 CL0092
Cotton_A_06794_CDS 26 194 26 195 PF01467.26 CTP_transf_like Domain 1 142 143 64.8 9.3e-18 1 CL0039
Cotton_A_00320_CDS 48 159 48 160 PF14226.6 DIOX_N Family 1 117 118 102.0 3.5e-29 1 CL0029
Cotton_A_00320_CDS 208 306 206 306 PF03171.20 2OG-FeII_Oxy Domain 3 101 101 102.5 1.4e-29 1 CL0029
Cotton_A_13082_CDS 53 109 52 110 PF02701.15 zf-Dof Family 2 58 59 114.2 2.1e-33 1 No_clan
Cotton_A_35150_CDS 3 92 3 122 PF01453.24 B_lectin Domain 6 100 105 64.1 1.4e-17 1 No_clan
Cotton_A_35150_CDS 181 253 149 256 PF00954.20 S_locus_glycop Domain 42 106 111 25.7 1.3e-05 1 No_clan
Cotton_A_39010_CDS 24 343 24 345 PF00332.18 Glyco_hydro_17 Domain 1 311 313 276.6 3.3e-82 1 CL0058
Cotton_A_39010_CDS 361 431 360 432 PF07983.13 X8 Domain 2 75 76 65.1 6.8e-18 1 No_clan
Cotton_A_13400_CDS 11 56 10 57 PF00319.18 SRF-TF Domain 2 47 48 71.3 3.3e-20 1 No_clan
Cotton_A_27927_CDS 122 273 120 293 PF00561.20 Abhydrolase_1 Domain 3 104 257 31.1 1.8e-07 1 CL0028
Cotton_A_18318_CDS 14 198 13 198 PF01105.24 EMP24_GP25L Domain 2 182 182 170.9 2.6e-50 1 CL0521
Cotton_A_07783_CDS 13 76 3 77 PF01775.17 Ribosomal_L18A Domain 57 120 121 91.4 4.4e-26 1 No_clan
Cotton_A_06204_CDS 47 172 47 174 PF01288.20 HPPK Domain 1 110 112 113.8 5.6e-33 1 No_clan
Cotton_A_06204_CDS 233 488 233 488 PF00809.22 Pterin_bind Domain 1 244 244 277.7 8.7e-83 1 CL0036
Cotton_A_02919_CDS 248 274 248 275 PF01535.20 PPR Family 4 30 31 12.1 0.18 1 CL0020
Cotton_A_02919_CDS 276 305 276 306 PF01535.20 PPR Family 1 30 31 20.4 0.00041 1 CL0020
Cotton_A_02919_CDS 348 370 346 375 PF01535.20 PPR Family 3 25 31 11.0 0.41 1 CL0020
Cotton_A_02919_CDS 377 407 377 407 PF01535.20 PPR Family 1 31 31 22.8 6.9e-05 1 CL0020
Cotton_A_02919_CDS 477 525 477 526 PF13041.6 PPR_2 Repeat 1 49 50 48.0 1.1e-12 1 CL0020
Cotton_A_02919_CDS 553 576 551 579 PF01535.20 PPR Family 3 26 31 13.9 0.049 1 CL0020
Cotton_A_11907_CDS 176 384 176 385 PF03360.16 Glyco_transf_43 Family 1 204 205 232.7 3.6e-69 1 CL0110
Cotton_A_25083_CDS 101 262 101 262 PF14543.6 TAXi_N Domain 1 178 178 175.5 1.2e-51 1 CL0129
Cotton_A_25083_CDS 287 436 287 438 PF14541.6 TAXi_C Domain 1 159 161 120.2 6.7e-35 1 CL0129
Cotton_A_09718_CDS 71 180 71 190 PF11712.8 Vma12 Family 1 125 139 32.6 7.1e-08 1 No_clan
Cotton_A_27884_CDS 28 107 28 107 PF17927.1 Ins134_P3_kin_N Domain 1 80 80 127.9 1.4e-37 1 CL0483
Cotton_A_27884_CDS 128 324 126 325 PF05770.11 Ins134_P3_kin Domain 3 200 201 308.9 1.2e-92 1 CL0179
Cotton_A_14947_CDS 233 507 193 508 PF01501.20 Glyco_transf_8 Family 7 255 256 265.2 6e-79 1 CL0110
Cotton_A_08004_CDS 251 307 246 307 PF07647.17 SAM_2 Domain 8 65 66 52.4 4.2e-14 1 CL0003
Cotton_A_21492_CDS 3 76 1 107 PF00931.22 NB-ARC Domain 150 222 252 33.7 2.1e-08 1 CL0023
Cotton_A_11800_CDS 151 392 150 393 PF00931.22 NB-ARC Domain 2 251 252 230.9 1.3e-68 1 CL0023
Cotton_A_11800_CDS 529 587 528 588 PF13855.6 LRR_8 Repeat 2 60 61 35.3 7e-09 1 CL0022
Cotton_A_24083_CDS 18 185 15 199 PF10294.9 Methyltransf_16 Family 6 163 174 89.7 1.7e-25 1 CL0063
Cotton_A_12362_CDS 65 231 65 232 PF00504.21 Chloroa_b-bind Family 1 160 161 173.8 3.7e-51 1 No_clan
Cotton_A_33263_CDS 44 76 42 81 PF00400.32 WD40 Repeat 3 32 38 13.8 0.083 1 CL0186
Cotton_A_33263_CDS 90 123 88 123 PF00400.32 WD40 Repeat 6 38 38 36.3 6.4e-09 1 CL0186
Cotton_A_33263_CDS 127 164 126 164 PF00400.32 WD40 Repeat 2 38 38 17.9 0.0041 1 CL0186
Cotton_A_33263_CDS 168 206 168 206 PF00400.32 WD40 Repeat 1 38 38 35.1 1.5e-08 1 CL0186
Cotton_A_33263_CDS 211 249 210 251 PF00400.32 WD40 Repeat 2 36 38 23.6 6.7e-05 1 CL0186
Cotton_A_33263_CDS 267 300 256 300 PF00400.32 WD40 Repeat 6 38 38 15.1 0.033 1 CL0186
Cotton_A_33263_CDS 310 362 294 375 PF12894.7 ANAPC4_WD40 Repeat 35 88 92 27.7 2.4e-06 1 CL0186
Cotton_A_29171_CDS 1 95 1 96 PF07732.15 Cu-oxidase_3 Domain 23 118 119 107.6 3.7e-31 1 CL0026
Cotton_A_29171_CDS 110 253 107 254 PF00394.22 Cu-oxidase Domain 5 158 159 121.1 4.5e-35 1 CL0026
Cotton_A_29171_CDS 350 473 335 476 PF07731.14 Cu-oxidase_2 Domain 16 134 137 90.9 5.8e-26 1 CL0026
Cotton_A_21874_CDS 11 197 9 216 PF01470.17 Peptidase_C15 Domain 3 171 202 65.0 1e-17 1 CL0379
Cotton_A_23543_CDS 81 135 81 138 PF00571.28 CBS Domain 1 53 57 47.1 2.4e-12 1 No_clan
Cotton_A_23543_CDS 174 227 174 230 PF00571.28 CBS Domain 1 54 57 57.0 2e-15 1 No_clan
Cotton_A_03658_CDS 12 96 9 96 PF03083.16 MtN3_slv Family 4 87 87 94.1 3.8e-27 1 CL0141
Cotton_A_03658_CDS 130 212 129 215 PF03083.16 MtN3_slv Family 2 84 87 95.5 1.5e-27 1 CL0141
Cotton_A_23570_CDS 848 907 848 907 PF02704.14 GASA Family 1 60 60 70.3 1.1e-19 1 No_clan
Cotton_A_16899_CDS 68 245 67 286 PF00370.21 FGGY_N Domain 2 167 245 81.5 7e-23 1 CL0108
Cotton_A_16899_CDS 363 573 362 573 PF02782.16 FGGY_C Domain 2 198 198 166.1 7.6e-49 1 CL0108
Cotton_A_36420_CDS 6 135 5 136 PF02365.15 NAM Family 2 125 126 99.5 2.6e-28 1 No_clan
Cotton_A_13588_CDS 214 270 212 270 PF13855.6 LRR_8 Repeat 3 61 61 36.0 4.3e-09 1 CL0022
Cotton_A_13588_CDS 374 434 374 434 PF13855.6 LRR_8 Repeat 1 61 61 37.2 1.8e-09 1 CL0022
Cotton_A_39674_CDS 46 96 6 97 PF14510.6 ABC_trans_N Domain 32 80 81 31.8 1.7e-07 1 No_clan
Cotton_A_08783_CDS 237 396 184 402 PF00201.18 UDPGT Family 252 387 499 87.6 7.9e-25 1 CL0113
Cotton_A_17000_CDS 1 63 1 64 PF00394.22 Cu-oxidase Domain 92 158 159 52.8 4.6e-14 1 CL0026
Cotton_A_17000_CDS 145 279 144 284 PF07731.14 Cu-oxidase_2 Domain 2 132 137 94.1 5.9e-27 1 CL0026
Cotton_A_14567_CDS 12 56 12 60 PF00319.18 SRF-TF Domain 1 45 48 46.4 2e-12 1 No_clan
Cotton_A_28749_CDS 160 247 149 249 PF00651.31 BTB Domain 22 108 111 47.4 1.9e-12 1 CL0033
Cotton_A_28749_CDS 273 365 266 367 PF07707.15 BACK Domain 14 101 103 33.2 4.3e-08 1 CL0033
Cotton_A_06120_CDS 164 265 162 278 PF01426.18 BAH Domain 3 108 122 34.4 1.6e-08 1 No_clan
Cotton_A_06120_CDS 394 467 394 470 PF05641.12 Agenet Domain 1 58 61 57.3 1.6e-15 1 CL0049
Cotton_A_14602_CDS 129 151 127 151 PF13516.6 LRR_6 Repeat 3 24 24 9.6 1 1 CL0022
Cotton_A_14602_CDS 179 201 179 203 PF13516.6 LRR_6 Repeat 1 22 24 9.4 1.2 1 CL0022
Cotton_A_14602_CDS 206 229 205 229 PF13516.6 LRR_6 Repeat 2 24 24 11.0 0.36 1 CL0022
Cotton_A_22649_CDS 5 92 5 97 PF00025.21 Arf Domain 1 91 175 108.3 2.8e-31 1 CL0023
Cotton_A_16852_CDS 33 159 31 159 PF02812.18 ELFV_dehydrog_N Domain 3 130 130 169.8 2.3e-50 1 CL0603
Cotton_A_16852_CDS 176 408 176 408 PF00208.21 ELFV_dehydrog Domain 1 243 243 254.8 9.2e-76 1 CL0063
Cotton_A_26353_CDS 8 172 8 175 PF13419.6 HAD_2 Family 1 155 178 28.0 2e-06 1 CL0137
Cotton_A_21144_CDS 41 252 41 253 PF07059.12 DUF1336 Family 1 228 229 213.3 4.6e-63 1 No_clan
Cotton_A_11243_CDS 32 70 29 70 PF08263.12 LRRNT_2 Family 4 39 41 21.2 0.00027 1 No_clan
Cotton_A_11243_CDS 102 142 101 148 PF12799.7 LRR_4 Repeat 2 40 44 28.7 1.2e-06 1 CL0022
Cotton_A_11243_CDS 151 208 150 209 PF13855.6 LRR_8 Repeat 3 60 61 28.3 1.1e-06 1 CL0022
Cotton_A_11243_CDS 319 335 319 336 PF13516.6 LRR_6 Repeat 1 17 24 8.8 1.8 1 CL0022
Cotton_A_11243_CDS 436 451 435 453 PF13516.6 LRR_6 Repeat 2 17 24 13.1 0.074 1 CL0022
Cotton_A_11243_CDS 470 530 470 530 PF13855.6 LRR_8 Repeat 1 61 61 27.7 1.7e-06 1 CL0022
Cotton_A_11243_CDS 784 986 781 1053 PF00069.25 Pkinase Domain 5 198 264 87.6 8.7e-25 1 CL0016
Cotton_A_21451_CDS 45 136 44 139 PF00230.20 MIP Family 2 96 227 107.3 9.5e-31 1 No_clan
Cotton_A_21451_CDS 138 248 136 248 PF00230.20 MIP Family 123 227 227 130.9 5.8e-38 1 No_clan
Cotton_A_35302_CDS 39 285 39 285 PF00141.23 peroxidase Domain 1 229 229 238.9 5.5e-71 1 CL0617
Cotton_A_11262_CDS 101 158 101 158 PF03106.15 WRKY Domain 1 59 59 79.5 1.6e-22 1 CL0274
Cotton_A_30690_CDS 9 155 2 158 PF03552.14 Cellulose_synt Family 566 703 722 30.2 1.6e-07 1 CL0110
Cotton_A_33510_CDS 30 375 28 380 PF00224.21 PK Family 4 343 348 310.8 9.6e-93 1 CL0151
Cotton_A_33510_CDS 395 515 395 523 PF02887.16 PK_C Domain 1 104 117 83.3 1.5e-23 1 No_clan
Cotton_A_35661_CDS 41 76 39 77 PF00646.33 F-box Domain 3 38 48 19.8 0.00051 1 CL0271
Cotton_A_35661_CDS 155 174 154 177 PF13516.6 LRR_6 Repeat 2 20 24 13.9 0.043 1 CL0022
Cotton_A_35661_CDS 207 231 207 231 PF13516.6 LRR_6 Repeat 1 24 24 19.0 0.001 1 CL0022
Cotton_A_35661_CDS 234 257 233 257 PF13516.6 LRR_6 Repeat 2 24 24 10.5 0.51 1 CL0022
Cotton_A_24249_CDS 50 432 30 452 PF13520.6 AA_permease_2 Family 23 418 425 110.5 8.7e-32 1 CL0062
Cotton_A_35728_CDS 268 439 249 449 PF00201.18 UDPGT Family 262 409 499 76.1 2.4e-21 1 CL0113
Cotton_A_07515_CDS 13 430 11 432 PF02458.15 Transferase Family 3 431 434 326.5 2.1e-97 1 CL0149
Cotton_A_04512_CDS 6 125 6 128 PF01408.22 GFO_IDH_MocA Family 1 117 120 71.5 1.1e-19 1 CL0063
Cotton_A_10428_CDS 14 132 14 133 PF00917.26 MATH Domain 1 111 113 51.1 1.3e-13 1 CL0389
Cotton_A_25210_CDS 32 120 29 121 PF13499.6 EF-hand_7 Domain 4 70 71 38.8 9.3e-10 1 CL0220
Cotton_A_31021_CDS 56 301 55 302 PF00520.31 Ion_trans Family 2 244 245 127.2 6.1e-37 1 CL0030
Cotton_A_31021_CDS 394 478 392 479 PF00027.29 cNMP_binding Domain 3 88 89 52.5 3.9e-14 1 CL0029
Cotton_A_31021_CDS 524 616 524 616 PF12796.7 Ank_2 Repeat 1 83 83 58.8 6.1e-16 1 CL0465
Cotton_A_31021_CDS 623 702 619 712 PF12796.7 Ank_2 Repeat 3 73 83 46.2 5.2e-12 1 CL0465
Cotton_A_31021_CDS 797 859 796 859 PF11834.8 KHA Family 2 67 67 78.5 2.9e-22 1 No_clan
Cotton_A_07931_CDS 523 587 522 588 PF12174.8 RST Domain 2 66 67 105.2 1.2e-30 1 No_clan
Cotton_A_11990_CDS 86 168 86 186 PF00355.26 Rieske Domain 1 82 89 67.7 6.5e-19 1 CL0516
Cotton_A_11990_CDS 299 381 299 384 PF08417.12 PaO Family 1 85 88 101.1 2.7e-29 1 No_clan
Cotton_A_36793_CDS 82 219 79 219 PF00080.20 Sod_Cu Domain 5 142 142 162.2 8e-48 1 No_clan
Cotton_A_00576_CDS 49 211 49 211 PF07800.12 DUF1644 Family 1 168 168 233.7 1.2e-69 1 CL0229
Cotton_A_00667_CDS 17 100 4 102 PF02519.14 Auxin_inducible Family 9 88 90 89.1 1.6e-25 1 No_clan
Cotton_A_06574_CDS 14 81 14 82 PF00076.22 RRM_1 Domain 1 69 70 57.3 1e-15 1 CL0221
Cotton_A_06574_CDS 114 171 114 183 PF00076.22 RRM_1 Domain 1 57 70 52.4 3.5e-14 1 CL0221
Cotton_A_06574_CDS 825 847 825 848 PF13516.6 LRR_6 Repeat 1 23 24 14.5 0.027 1 CL0022
Cotton_A_06574_CDS 1264 1429 1219 1448 PF16095.5 COR Family 35 177 194 46.6 3.3e-12 1 No_clan
Cotton_A_11712_CDS 65 161 65 161 PF12755.7 Vac14_Fab1_bd Family 1 97 97 134.6 1.3e-39 1 CL0020
Cotton_A_11712_CDS 429 608 428 608 PF11916.8 Vac14_Fig4_bd Domain 2 179 179 237.7 6.4e-71 1 No_clan
Cotton_A_15669_CDS 52 175 46 182 PF05978.16 UNC-93 Family 32 150 157 55.1 6.8e-15 1 CL0015
Cotton_A_34672_CDS 65 226 54 227 PF00481.21 PP2C Family 13 181 258 115.6 2.9e-33 1 CL0238
Cotton_A_11852_CDS 11 94 9 96 PF00153.27 Mito_carr Family 4 94 97 46.5 2.6e-12 1 No_clan
Cotton_A_28319_CDS 82 170 79 193 PF00069.25 Pkinase Domain 4 90 264 54.9 8e-15 1 CL0016
Cotton_A_28319_CDS 204 255 192 263 PF07714.17 Pkinase_Tyr Domain 168 220 259 24.8 1.1e-05 1 CL0016
Cotton_A_26677_CDS 32 76 30 76 PF08263.12 LRRNT_2 Family 4 41 41 31.6 1.5e-07 1 No_clan
Cotton_A_26677_CDS 151 164 151 179 PF00560.33 LRR_1 Repeat 1 14 23 11.3 0.44 1 CL0022
Cotton_A_26677_CDS 277 299 277 299 PF00560.33 LRR_1 Repeat 1 23 23 14.8 0.032 1 CL0022
Cotton_A_00413_CDS 59 103 58 105 PF13041.6 PPR_2 Repeat 2 46 50 30.6 2.9e-07 1 CL0020
Cotton_A_00413_CDS 157 188 155 188 PF12854.7 PPR_1 Repeat 3 34 34 32.6 4.7e-08 1 CL0020
Cotton_A_00413_CDS 190 235 190 239 PF13041.6 PPR_2 Repeat 1 46 50 49.7 3.1e-13 1 CL0020
Cotton_A_00413_CDS 292 333 292 341 PF13041.6 PPR_2 Repeat 1 42 50 39.4 5.1e-10 1 CL0020
Cotton_A_00413_CDS 368 390 366 392 PF01535.20 PPR Family 3 25 31 12.2 0.17 1 CL0020
Cotton_A_26947_CDS 62 605 62 608 PF07058.11 MAP70 Family 1 550 554 943.6 3.9e-284 1 No_clan
Cotton_A_04661_CDS 47 299 40 299 PF00141.23 peroxidase Domain 4 229 229 186.7 5e-55 1 CL0617
Cotton_A_03105_CDS 83 153 74 153 PF12796.7 Ank_2 Repeat 24 83 83 49.6 4.4e-13 1 CL0465
Cotton_A_03105_CDS 270 360 269 407 PF00004.29 AAA Domain 9 96 132 32.1 1.3e-07 1 CL0023
Cotton_A_07702_CDS 63 118 60 119 PF01471.18 PG_binding_1 Domain 5 56 57 43.3 3.1e-11 1 CL0244
Cotton_A_07702_CDS 154 313 150 313 PF00413.24 Peptidase_M10 Domain 5 158 158 164.2 2.1e-48 1 CL0126
Cotton_A_35474_CDS 3 152 1 154 PF00407.19 Bet_v_1 Domain 4 149 151 41.2 1.4e-10 1 CL0209
Cotton_A_11976_CDS 102 431 102 431 PF01979.20 Amidohydro_1 Domain 1 344 344 58.6 6.5e-16 1 CL0034
Cotton_A_19661_CDS 11 58 11 58 PF16891.5 STPPase_N Family 1 48 48 72.6 2.6e-20 1 No_clan
Cotton_A_19661_CDS 60 251 59 254 PF00149.28 Metallophos Domain 2 201 204 136.9 1.2e-39 1 CL0163
Cotton_A_28932_CDS 7 160 3 164 PF01150.17 GDA1_CD39 Family 89 253 423 125.6 2.1e-36 1 CL0108
Cotton_A_16026_CDS 132 285 132 285 PF09416.10 UPF1_Zn_bind Domain 1 152 152 237.2 6.9e-71 1 CL0229
Cotton_A_16026_CDS 337 426 337 426 PF18141.1 DUF5599 Domain 1 93 93 115.3 1.1e-33 1 No_clan
Cotton_A_16026_CDS 486 561 480 652 PF04851.15 ResIII Family 7 75 171 24.2 2.8e-05 1 CL0023
Cotton_A_16026_CDS 582 685 578 687 PF13086.6 AAA_11 Domain 154 259 261 100.6 1.2e-28 1 CL0023
Cotton_A_16026_CDS 695 890 694 891 PF13087.6 AAA_12 Domain 2 198 199 201.7 8.8e-60 1 CL0023
Cotton_A_30626_CDS 93 158 81 176 PF00745.20 GlutR_dimer Domain 19 82 97 33.0 5.9e-08 1 No_clan
Cotton_A_15148_CDS 19 87 17 88 PF13417.6 GST_N_3 Domain 6 74 75 61.8 6.3e-17 1 CL0172
Cotton_A_15148_CDS 116 184 113 185 PF13410.6 GST_C_2 Domain 4 68 69 30.8 2.1e-07 1 CL0497
Cotton_A_21648_CDS 94 536 93 537 PF02133.15 Transp_cyt_pur Family 2 438 440 333.8 1.5e-99 1 CL0062
Cotton_A_04022_CDS 8 90 8 97 PF01370.21 Epimerase Family 1 77 241 38.1 1.1e-09 1 CL0063
Cotton_A_30905_CDS 71 162 71 163 PF03101.15 FAR1 Domain 1 89 90 87.1 9.5e-25 1 CL0274
Cotton_A_30905_CDS 294 387 294 388 PF10551.9 MULE Domain 1 95 96 75.9 2.4e-21 1 CL0219
Cotton_A_02601_CDS 27 306 27 308 PF12697.7 Abhydrolase_6 Domain 1 218 220 70.6 2.8e-19 1 CL0028
Cotton_A_38993_CDS 50 91 46 105 PF01603.20 B56 Family 278 319 415 50.5 1.6e-13 1 CL0020
Cotton_A_24040_CDS 29 264 29 264 PF00230.20 MIP Family 1 227 227 293.5 1.1e-87 1 No_clan
Cotton_A_26297_CDS 67 193 45 236 PF02458.15 Transferase Family 53 175 434 75.5 3.3e-21 1 CL0149
Cotton_A_10222_CDS 69 126 69 126 PF08031.12 BBE Domain 1 46 46 67.8 6.5e-19 1 CL0277
Cotton_A_23016_CDS 94 221 93 222 PF04859.12 DUF641 Family 3 127 128 127.2 4.7e-37 1 No_clan
Cotton_A_34665_CDS 14 75 13 75 PF00462.24 Glutaredoxin Domain 2 60 60 45.7 5.6e-12 1 CL0172
Cotton_A_23396_CDS 252 285 252 287 PF00320.27 GATA Domain 1 34 36 54.6 6e-15 1 CL0167
Cotton_A_26634_CDS 86 353 82 353 PF07714.17 Pkinase_Tyr Domain 5 259 259 165.2 1.6e-48 1 CL0016
Cotton_A_30104_CDS 45 115 45 115 PF00076.22 RRM_1 Domain 1 70 70 80.7 5.1e-23 1 CL0221
Cotton_A_29643_CDS 2 78 1 96 PF13360.6 PQQ_2 Domain 9 84 237 30.0 3.6e-07 1 CL0186
Cotton_A_35516_CDS 11 73 11 73 PF00226.31 DnaJ Domain 1 63 63 87.6 4.4e-25 1 CL0392
Cotton_A_05258_CDS 23 85 10 87 PF02519.14 Auxin_inducible Family 26 87 90 43.2 3.3e-11 1 No_clan
Cotton_A_21663_CDS 70 175 70 175 PF01453.24 B_lectin Domain 1 105 105 124.1 3.1e-36 1 No_clan
Cotton_A_21663_CDS 207 316 207 317 PF00954.20 S_locus_glycop Domain 1 110 111 96.0 1.8e-27 1 No_clan
Cotton_A_21663_CDS 338 404 338 404 PF08276.11 PAN_2 Domain 1 67 67 76.9 9.8e-22 1 CL0168
Cotton_A_21663_CDS 500 767 499 770 PF07714.17 Pkinase_Tyr Domain 2 256 259 168.1 2.1e-49 1 CL0016
Cotton_A_21663_CDS 775 816 772 816 PF11883.8 DUF3403 Family 5 46 46 34.1 2.1e-08 1 No_clan
Cotton_A_28411_CDS 14 186 13 202 PF04321.17 RmlD_sub_bind Domain 2 165 287 48.9 4.7e-13 1 CL0063
Cotton_A_36502_CDS 169 390 169 390 PF06991.11 MFAP1 Family 1 217 217 245.1 6.7e-73 1 No_clan
Cotton_A_38103_CDS 86 202 85 207 PF01762.21 Galactosyl_T Family 2 119 195 28.8 1e-06 1 CL0110
Cotton_A_04422_CDS 8 132 8 132 PF02365.15 NAM Family 1 126 126 57.6 2.3e-15 1 No_clan
Cotton_A_01524_CDS 14 162 12 177 PF04997.12 RNA_pol_Rpb1_1 Domain 3 108 312 107.6 7.6e-31 1 No_clan
Cotton_A_21206_CDS 89 259 89 259 PF01214.18 CK_II_beta Domain 1 182 182 214.7 8.5e-64 1 No_clan
Cotton_A_39215_CDS 67 248 67 249 PF17047.5 SMP_LBD Domain 1 179 180 63.5 1.6e-17 1 CL0648
Cotton_A_39215_CDS 261 358 260 364 PF00168.30 C2 Domain 2 97 103 79.8 1.6e-22 1 CL0154
Cotton_A_39215_CDS 419 521 418 521 PF00168.30 C2 Domain 2 103 103 45.5 7.1e-12 1 CL0154
Cotton_A_37250_CDS 85 150 85 153 PF00076.22 RRM_1 Domain 1 65 70 43.1 2.7e-11 1 CL0221
Cotton_A_37250_CDS 243 305 243 308 PF00076.22 RRM_1 Domain 1 66 70 33.6 2.5e-08 1 CL0221
Cotton_A_33887_CDS 52 105 51 106 PF00646.33 F-box Domain 2 47 48 35.8 5e-09 1 CL0271
Cotton_A_33887_CDS 116 416 116 416 PF01167.18 Tub Domain 1 241 241 331.4 3.5e-99 1 CL0395
Cotton_A_08658_CDS 463 565 461 567 PF03763.13 Remorin_C Family 3 105 107 102.9 8.1e-30 1 No_clan
Cotton_A_16194_CDS 80 353 79 354 PF07819.13 PGAP1 Family 2 230 231 290.7 8.4e-87 1 CL0028
Cotton_A_23605_CDS 256 635 253 662 PF07690.16 MFS_1 Family 4 338 353 82.4 2.8e-23 1 CL0015
Cotton_A_20082_CDS 216 305 216 305 PF17958.1 EF-hand_13 Domain 1 90 90 121.3 1.1e-35 1 CL0220
Cotton_A_20082_CDS 320 420 320 421 PF13499.6 EF-hand_7 Domain 1 70 71 66.1 2.8e-18 1 CL0220
Cotton_A_10702_CDS 43 162 41 163 PF00307.31 CH Domain 3 108 109 46.4 3.7e-12 1 CL0188
Cotton_A_10702_CDS 420 733 420 734 PF00225.23 Kinesin Domain 1 332 333 346.3 1.5e-103 1 CL0023
Cotton_A_27720_CDS 1243 1466 1243 1466 PF02854.19 MIF4G Family 1 212 212 181.3 1.9e-53 1 CL0020
Cotton_A_27720_CDS 1707 1816 1703 1817 PF02847.17 MA3 Family 5 112 113 49.3 4e-13 1 CL0020
Cotton_A_25113_CDS 110 159 107 160 PF07526.11 POX Domain 86 135 136 66.5 3.4e-18 1 No_clan
Cotton_A_25113_CDS 224 263 224 263 PF05920.11 Homeobox_KN Family 1 40 40 65.3 3.4e-18 1 CL0123
Cotton_A_36869_CDS 8 101 5 103 PF12796.7 Ank_2 Repeat 4 81 83 29.0 1.2e-06 1 CL0465
Cotton_A_36869_CDS 103 162 95 167 PF12796.7 Ank_2 Repeat 24 74 83 33.6 4.4e-08 1 CL0465
Cotton_A_36869_CDS 186 217 186 218 PF00023.30 Ank Repeat 1 31 32 15.2 0.022 1 CL0465
Cotton_A_36869_CDS 290 356 286 399 PF13962.6 PGG Domain 6 75 116 53.3 2.2e-14 1 No_clan
Cotton_A_29963_CDS 37 297 36 297 PF05910.12 DUF868 Family 2 279 279 287.7 1.1e-85 1 No_clan
Cotton_A_01946_CDS 22 165 17 165 PF04535.12 DUF588 Domain 6 150 150 113.6 6.8e-33 1 CL0396
Cotton_A_09066_CDS 200 335 197 336 PF10409.9 PTEN_C2 Family 4 134 135 97.4 5.5e-28 1 CL0154
Cotton_A_19350_CDS 57 514 57 514 PF00759.19 Glyco_hydro_9 Domain 1 411 411 438.7 2.9e-131 1 CL0059
Cotton_A_09705_CDS 112 401 112 430 PF09192.10 Act-Frag_cataly Domain 1 245 282 180.3 4.9e-53 1 CL0016
Cotton_A_09705_CDS 721 848 716 850 PF00782.20 DSPc Domain 6 131 133 88.3 3.5e-25 1 CL0031
Cotton_A_07114_CDS 74 200 71 202 PF01569.21 PAP2 Family 4 131 136 73.4 1.4e-20 1 CL0525
Cotton_A_11130_CDS 312 572 309 574 PF00069.25 Pkinase Domain 4 260 264 133.3 9.7e-39 1 CL0016
Cotton_A_32218_CDS 32 365 31 372 PF00083.24 Sugar_tr Family 2 338 452 298.1 1.1e-88 1 CL0015
Cotton_A_04655_CDS 117 191 117 191 PF08059.13 SEP Domain 1 76 76 96.4 1.1e-27 1 No_clan
Cotton_A_04655_CDS 228 302 224 303 PF00789.20 UBX Domain 5 80 81 56.2 2.9e-15 1 CL0072
Cotton_A_05583_CDS 45 344 34 348 PF04142.15 Nuc_sug_transp Family 13 311 315 118.0 4.8e-34 1 CL0184
Cotton_A_34095_CDS 32 108 27 109 PF02362.21 B3 Family 18 100 101 46.6 2.4e-12 1 CL0405
Cotton_A_34095_CDS 176 272 176 275 PF02362.21 B3 Family 1 98 101 58.2 6e-16 1 CL0405
Cotton_A_34095_CDS 474 569 474 572 PF02362.21 B3 Family 1 97 101 63.9 9.5e-18 1 CL0405
Cotton_A_34095_CDS 696 769 694 772 PF02362.21 B3 Family 3 77 101 32.7 5.2e-08 1 CL0405
Cotton_A_34095_CDS 791 873 783 875 PF02362.21 B3 Family 10 99 101 49.5 2.9e-13 1 CL0405
Cotton_A_34095_CDS 999 1097 999 1099 PF02362.21 B3 Family 1 99 101 57.4 1e-15 1 CL0405
Cotton_A_34095_CDS 1161 1259 1160 1260 PF02362.21 B3 Family 1 100 101 56.3 2.3e-15 1 CL0405
Cotton_A_34095_CDS 1410 1499 1409 1511 PF02362.21 B3 Family 1 90 101 53.4 1.8e-14 1 CL0405
Cotton_A_29348_CDS 128 213 128 213 PF01190.17 Pollen_Ole_e_I Family 1 99 99 57.0 2e-15 1 CL0287
Cotton_A_21311_CDS 27 354 27 354 PF00657.22 Lipase_GDSL Family 1 200 200 99.6 2.2e-28 1 CL0264
Cotton_A_34097_CDS 10 100 9 101 PF02362.21 B3 Family 2 100 101 57.9 7.3e-16 1 CL0405
Cotton_A_34097_CDS 381 475 381 478 PF02362.21 B3 Family 1 97 101 67.7 6.3e-19 1 CL0405
Cotton_A_22143_CDS 37 75 36 76 PF08263.12 LRRNT_2 Family 2 40 41 43.7 2.4e-11 1 No_clan
Cotton_A_22143_CDS 351 373 351 373 PF00560.33 LRR_1 Repeat 1 23 23 9.6 1.6 1 CL0022
Cotton_A_22143_CDS 501 554 500 556 PF13855.6 LRR_8 Repeat 6 59 61 31.3 1.2e-07 1 CL0022
Cotton_A_22143_CDS 709 940 707 984 PF00069.25 Pkinase Domain 3 211 264 137.8 4.2e-40 1 CL0016
Cotton_A_05579_CDS 46 314 46 316 PF00069.25 Pkinase Domain 1 260 264 158.9 1.5e-46 1 CL0016
Cotton_A_30797_CDS 35 148 34 150 PF07732.15 Cu-oxidase_3 Domain 2 117 119 136.4 4.3e-40 1 CL0026
Cotton_A_30797_CDS 161 296 160 297 PF00394.22 Cu-oxidase Domain 2 158 159 116.9 8.8e-34 1 CL0026
Cotton_A_30797_CDS 388 515 377 517 PF07731.14 Cu-oxidase_2 Domain 12 135 137 90.7 6.3e-26 1 CL0026
Cotton_A_20709_CDS 212 305 212 305 PF01190.17 Pollen_Ole_e_I Family 1 99 99 63.3 2.1e-17 1 CL0287
Cotton_A_13974_CDS 62 181 34 186 PF04072.14 LCM Family 53 171 188 64.9 8.7e-18 1 CL0063
Cotton_A_07153_CDS 420 448 419 454 PF05553.11 DUF761 Family 2 30 36 45.2 5e-12 1 No_clan
Cotton_A_23534_CDS 2 190 1 194 PF03140.15 DUF247 Family 194 357 397 143.4 1.1e-41 1 No_clan
Cotton_A_27337_CDS 17 389 16 390 PF07690.16 MFS_1 Family 2 352 353 187.1 4.3e-55 1 CL0015
Cotton_A_00582_CDS 13 152 11 154 PF00892.20 EamA Family 3 135 137 48.5 9.5e-13 1 CL0184
Cotton_A_00582_CDS 191 330 191 331 PF00892.20 EamA Family 1 136 137 57.3 1.8e-15 1 CL0184
Cotton_A_23994_CDS 10 171 10 171 PF14215.6 bHLH-MYC_N Family 1 175 175 131.3 4.5e-38 1 CL0161
Cotton_A_12211_CDS 55 366 50 367 PF03492.15 Methyltransf_7 Family 6 333 334 337.2 1.1e-100 1 CL0063
Cotton_A_20995_CDS 79 196 70 197 PF00134.23 Cyclin_N Domain 14 126 127 97.7 4.1e-28 1 CL0065
Cotton_A_20995_CDS 199 310 199 318 PF02984.19 Cyclin_C Domain 1 106 119 71.1 7.8e-20 1 CL0065
Cotton_A_22790_CDS 196 244 195 244 PF13041.6 PPR_2 Repeat 2 50 50 37.1 2.7e-09 1 CL0020
Cotton_A_22790_CDS 280 297 278 298 PF01535.20 PPR Family 13 30 31 9.5 1.3 1 CL0020
Cotton_A_22790_CDS 314 332 313 333 PF01535.20 PPR Family 12 30 31 11.9 0.21 1 CL0020
Cotton_A_22790_CDS 339 368 338 368 PF01535.20 PPR Family 2 31 31 27.2 2.7e-06 1 CL0020
Cotton_A_22790_CDS 374 418 372 419 PF13041.6 PPR_2 Repeat 5 49 50 37.2 2.5e-09 1 CL0020
Cotton_A_22790_CDS 440 489 440 489 PF13041.6 PPR_2 Repeat 1 50 50 41.3 1.3e-10 1 CL0020
Cotton_A_22790_CDS 517 542 514 543 PF01535.20 PPR Family 5 30 31 13.1 0.09 1 CL0020
Cotton_A_10306_CDS 15 103 14 106 PF04718.15 ATP-synt_G Family 2 83 100 46.1 6.6e-12 1 No_clan
Cotton_A_10306_CDS 105 269 105 269 PF03398.14 Ist1 Family 1 164 164 191.1 1.2e-56 1 No_clan
Cotton_A_22459_CDS 16 68 16 68 PF00847.20 AP2 Domain 1 54 54 58.7 4.9e-16 1 CL0081
Cotton_A_28731_CDS 86 372 85 373 PF05212.12 DUF707 Family 2 295 296 463.4 2.8e-139 1 No_clan
Cotton_A_19058_CDS 19 260 19 262 PF10033.9 ATG13 Family 1 237 240 133.3 1.1e-38 1 CL0651
Cotton_A_17503_CDS 9 70 9 70 PF00886.19 Ribosomal_S16 Family 1 62 62 92.5 1.2e-26 1 No_clan
Cotton_A_12028_CDS 30 122 30 122 PF09133.10 SANTA Domain 1 90 90 92.0 2.5e-26 1 No_clan
Cotton_A_18994_CDS 93 367 88 369 PF07714.17 Pkinase_Tyr Domain 6 257 259 159.8 7.5e-47 1 CL0016
Cotton_A_33682_CDS 30 79 30 79 PF08100.11 Dimerisation Domain 1 51 51 57.9 7.4e-16 1 CL0123
Cotton_A_33682_CDS 131 345 131 345 PF00891.18 Methyltransf_2 Domain 1 210 210 176.9 3.1e-52 1 CL0063
Cotton_A_34190_CDS 92 368 87 368 PF07714.17 Pkinase_Tyr Domain 6 259 259 157.8 3e-46 1 CL0016
Cotton_A_36037_CDS 14 238 14 238 PF00244.20 14-3-3 Domain 1 222 222 342.5 9.2e-103 1 No_clan
Cotton_A_28185_CDS 73 483 58 496 PF00067.22 p450 Domain 25 448 463 285.4 7.7e-85 1 No_clan
Cotton_A_07928_CDS 62 94 62 94 PF02375.17 JmjN Family 1 33 34 53.0 2.3e-14 1 CL0029
Cotton_A_07928_CDS 238 361 238 361 PF02373.22 JmjC Domain 1 114 114 135.7 8.5e-40 1 CL0029
Cotton_A_07928_CDS 458 509 458 510 PF02928.16 zf-C5HC2 Domain 1 53 54 35.8 7.7e-09 1 No_clan
Cotton_A_18383_CDS 222 539 218 541 PF03016.15 Exostosin Family 5 298 300 188.3 1.8e-55 1 No_clan
Cotton_A_27296_CDS 144 271 141 274 PF04116.13 FA_hydroxylase Family 4 123 133 51.4 1.3e-13 1 No_clan
Cotton_A_11792_CDS 56 128 54 128 PF03330.18 DPBB_1 Domain 3 83 83 50.3 2.2e-13 1 CL0199
Cotton_A_15158_CDS 15 71 14 71 PF00831.23 Ribosomal_L29 Family 2 57 57 64.4 6.7e-18 1 CL0346
Cotton_A_17310_CDS 10 60 10 61 PF00847.20 AP2 Domain 1 53 54 47.3 1.8e-12 1 CL0081
Cotton_A_07388_CDS 12 302 6 302 PF02219.17 MTHFR Domain 6 287 287 416.2 6.5e-125 1 CL0086
Cotton_A_30537_CDS 4 106 4 109 PF00006.25 ATP-synt_ab Domain 1 93 213 73.8 1.5e-20 1 CL0023
Cotton_A_05099_CDS 5 134 4 134 PF02365.15 NAM Family 2 126 126 102.4 3.3e-29 1 No_clan
Cotton_A_35562_CDS 4 85 2 86 PF00276.20 Ribosomal_L23 Family 3 84 86 68.0 6.8e-19 1 No_clan
Cotton_A_08690_CDS 26 260 25 261 PF03629.18 SASA Domain 2 225 226 289.8 1.4e-86 1 CL0264
Cotton_A_12006_CDS 253 373 248 373 PF13561.6 adh_short_C2 Domain 116 234 234 114.5 5.3e-33 1 CL0063
Cotton_A_09453_CDS 5 577 4 577 PF02705.16 K_trans Family 2 534 534 610.5 2.3e-183 1 CL0062
Cotton_A_02090_CDS 53 81 51 81 PF01535.20 PPR Family 3 31 31 18.1 0.0023 1 CL0020
Cotton_A_02090_CDS 92 116 87 116 PF01535.20 PPR Family 7 31 31 10.3 0.71 1 CL0020
Cotton_A_02090_CDS 158 203 155 203 PF13041.6 PPR_2 Repeat 5 50 50 42.6 4.9e-11 1 CL0020
Cotton_A_02090_CDS 231 261 231 261 PF01535.20 PPR Family 1 31 31 22.2 0.00011 1 CL0020
Cotton_A_02090_CDS 322 382 322 385 PF13812.6 PPR_3 Repeat 1 60 63 17.9 0.0024 1 CL0020
Cotton_A_02090_CDS 403 434 402 435 PF12854.7 PPR_1 Repeat 2 33 34 38.8 5.4e-10 1 CL0020
Cotton_A_02090_CDS 445 473 444 474 PF01535.20 PPR Family 2 30 31 17.2 0.0043 1 CL0020
Cotton_A_24760_CDS 48 114 48 114 PF00076.22 RRM_1 Domain 1 70 70 45.3 5.6e-12 1 CL0221
Cotton_A_06011_CDS 195 481 195 482 PF06814.13 Lung_7-TM_R Family 1 294 295 340.5 7.6e-102 1 CL0192
Cotton_A_40745_CDS 9 117 1 134 PF01490.18 Aa_trans Family 65 172 409 33.2 2.3e-08 1 CL0062
Cotton_A_29865_CDS 7 57 7 61 PF13850.6 ERGIC_N Domain 1 51 91 47.9 1.3e-12 1 No_clan
Cotton_A_09155_CDS 81 356 76 356 PF07714.17 Pkinase_Tyr Domain 6 259 259 157.1 5e-46 1 CL0016
Cotton_A_22295_CDS 79 365 79 368 PF01715.17 IPPT Domain 1 225 228 215.4 9.3e-64 1 CL0023
Cotton_A_36804_CDS 7 68 7 74 PF00076.22 RRM_1 Domain 1 61 70 53.7 1.3e-14 1 CL0221
Cotton_A_36804_CDS 107 164 107 178 PF00076.22 RRM_1 Domain 1 57 70 54.5 7.3e-15 1 CL0221
Cotton_A_06031_CDS 14 149 10 174 PF00753.27 Lactamase_B Domain 8 166 197 30.7 3e-07 1 CL0381
Cotton_A_06031_CDS 198 278 197 278 PF16123.5 HAGH_C Family 2 80 80 91.6 3.3e-26 1 CL0381
Cotton_A_04278_CDS 263 310 263 310 PF12906.7 RINGv Domain 1 48 48 40.6 2.1e-10 1 CL0229
Cotton_A_05381_CDS 42 131 25 136 PF00083.24 Sugar_tr Family 35 129 452 46.3 2.7e-12 1 CL0015
Cotton_A_13937_CDS 10 118 10 118 PF00255.19 GSHPx Family 1 108 108 146.3 2.1e-43 1 CL0172
Cotton_A_16036_CDS 107 177 106 178 PF13499.6 EF-hand_7 Domain 2 70 71 33.1 5.6e-08 1 CL0220
Cotton_A_19443_CDS 35 128 35 130 PF14363.6 AAA_assoc Family 1 94 96 76.9 1.2e-21 1 No_clan
Cotton_A_19443_CDS 252 399 251 400 PF00004.29 AAA Domain 2 131 132 54.3 1.7e-14 1 CL0023
Cotton_A_29600_CDS 57 153 57 167 PF14226.6 DIOX_N Family 1 95 118 63.1 3.8e-17 1 CL0029
Cotton_A_29600_CDS 195 240 193 260 PF03171.20 2OG-FeII_Oxy Domain 3 47 101 30.2 4.9e-07 1 CL0029
Cotton_A_01800_CDS 36 187 36 187 PF01138.21 RNase_PH Domain 1 132 132 73.1 2.9e-20 1 CL0329
Cotton_A_01800_CDS 216 283 216 284 PF03725.15 RNase_PH_C Domain 1 66 67 52.5 3.8e-14 1 No_clan
Cotton_A_18516_CDS 143 289 143 289 PF13365.6 Trypsin_2 Domain 1 150 150 104.3 1.1e-29 1 CL0124
Cotton_A_18516_CDS 361 410 357 410 PF17820.1 PDZ_6 Domain 5 56 56 46.6 2.2e-12 1 CL0466
Cotton_A_11616_CDS 22 86 22 86 PF05641.12 Agenet Domain 1 61 61 22.9 8.9e-05 1 CL0049
Cotton_A_11616_CDS 204 265 204 265 PF05641.12 Agenet Domain 1 61 61 36.2 6.3e-09 1 CL0049
Cotton_A_33106_CDS 23 104 22 104 PF14389.6 Lzipper-MIP1 Family 2 84 84 70.9 8.3e-20 1 No_clan
Cotton_A_33106_CDS 382 511 381 511 PF04784.14 DUF547 Family 2 123 123 123.5 4.7e-36 1 No_clan
Cotton_A_29688_CDS 16 78 4 78 PF02519.14 Auxin_inducible Family 27 90 90 94.5 3.3e-27 1 No_clan
Cotton_A_16580_CDS 8 136 7 145 PF00335.20 Tetraspanin Family 2 106 229 51.7 9.3e-14 1 CL0347
Cotton_A_06179_CDS 165 221 165 222 PF03106.15 WRKY Domain 1 58 59 89.6 1.1e-25 1 CL0274
Cotton_A_11851_CDS 76 179 74 179 PF01453.24 B_lectin Domain 3 105 105 98.7 2.5e-28 1 No_clan
Cotton_A_11851_CDS 323 357 300 360 PF08276.11 PAN_2 Domain 27 62 67 36.0 5.5e-09 1 CL0168
Cotton_A_11851_CDS 488 529 487 529 PF11883.8 DUF3403 Family 5 46 46 32.4 7.4e-08 1 No_clan
Cotton_A_38910_CDS 104 147 103 147 PF13639.6 zf-RING_2 Domain 2 44 44 50.9 1.4e-13 1 CL0229
Cotton_A_19035_CDS 261 292 253 292 PF00400.32 WD40 Repeat 9 38 38 14.6 0.045 1 CL0186
Cotton_A_26633_CDS 190 277 187 279 PF12894.7 ANAPC4_WD40 Repeat 4 90 92 24.7 2.2e-05 1 CL0186
Cotton_A_26633_CDS 548 583 545 583 PF00400.32 WD40 Repeat 4 38 38 42.0 1e-10 1 CL0186
Cotton_A_26633_CDS 673 859 662 882 PF04192.12 Utp21 Domain 10 191 233 143.8 5.6e-42 1 No_clan
Cotton_A_08373_CDS 155 187 155 188 PF12854.7 PPR_1 Repeat 1 33 34 37.4 1.5e-09 1 CL0020
Cotton_A_08373_CDS 227 258 225 258 PF12854.7 PPR_1 Repeat 3 34 34 35.5 5.7e-09 1 CL0020
Cotton_A_08373_CDS 261 293 260 293 PF12854.7 PPR_1 Repeat 2 34 34 48.3 5.7e-13 1 CL0020
Cotton_A_08373_CDS 299 347 299 348 PF13041.6 PPR_2 Repeat 1 49 50 63.6 1.4e-17 1 CL0020
Cotton_A_08373_CDS 369 418 369 418 PF13041.6 PPR_2 Repeat 1 50 50 54.3 1.2e-14 1 CL0020
Cotton_A_08373_CDS 439 488 439 488 PF13041.6 PPR_2 Repeat 1 50 50 56.7 2e-15 1 CL0020
Cotton_A_08373_CDS 513 542 512 542 PF01535.20 PPR Family 2 31 31 19.6 0.00077 1 CL0020
Cotton_A_08373_CDS 545 591 544 591 PF13041.6 PPR_2 Repeat 2 48 50 60.3 1.5e-16 1 CL0020
Cotton_A_09300_CDS 7 294 7 296 PF01212.21 Beta_elim_lyase Domain 1 291 293 313.6 1.2e-93 1 CL0061
Cotton_A_21913_CDS 118 580 117 581 PF03055.15 RPE65 Family 2 462 463 368.4 6.9e-110 1 No_clan
Cotton_A_20105_CDS 180 225 178 238 PF00170.21 bZIP_1 Family 5 50 64 38.4 9.7e-10 1 CL0018
Cotton_A_15089_CDS 65 146 61 149 PF00153.27 Mito_carr Family 7 94 97 64.8 4.9e-18 1 No_clan
Cotton_A_15089_CDS 177 258 171 261 PF00153.27 Mito_carr Family 8 94 97 62.5 2.6e-17 1 No_clan
Cotton_A_15089_CDS 270 355 264 358 PF00153.27 Mito_carr Family 7 94 97 67.6 6.6e-19 1 No_clan
Cotton_A_28978_CDS 1 109 1 109 PF01138.21 RNase_PH Domain 23 132 132 51.7 1.2e-13 1 CL0329
Cotton_A_28978_CDS 112 174 112 175 PF03725.15 RNase_PH_C Domain 1 65 67 45.8 4.6e-12 1 No_clan
Cotton_A_28978_CDS 207 287 206 287 PF03726.14 PNPase Domain 2 83 83 62.3 4.5e-17 1 No_clan
Cotton_A_28978_CDS 290 423 290 423 PF01138.21 RNase_PH Domain 1 132 132 80.0 2.1e-22 1 CL0329
Cotton_A_28978_CDS 531 580 513 586 PF00013.29 KH_1 Domain 3 59 66 22.7 6.3e-05 1 CL0007
Cotton_A_28978_CDS 595 664 592 664 PF00575.23 S1 Domain 4 75 75 46.6 3.2e-12 1 CL0021
Cotton_A_11122_CDS 77 184 74 184 PF10184.9 DUF2358 Family 4 113 113 91.5 3.9e-26 1 CL0051
Cotton_A_11122_CDS 217 368 217 374 PF04832.12 SOUL Family 1 155 168 131.3 3.8e-38 1 CL0319
Cotton_A_03082_CDS 7 33 5 34 PF00641.18 zf-RanBP Domain 3 29 30 21.0 0.00015 1 CL0167
Cotton_A_03082_CDS 54 82 53 84 PF00641.18 zf-RanBP Domain 2 28 30 26.7 2.5e-06 1 CL0167
Cotton_A_03082_CDS 103 132 103 133 PF00641.18 zf-RanBP Domain 1 28 30 32.9 2.9e-08 1 CL0167
Cotton_A_19602_CDS 198 453 197 453 PF00069.25 Pkinase Domain 2 264 264 238.5 8e-71 1 CL0016
Cotton_A_26078_CDS 131 368 129 372 PF04499.15 SAPS Family 3 236 489 100.3 1.1e-28 1 No_clan
Cotton_A_26078_CDS 372 505 367 506 PF04499.15 SAPS Family 355 488 489 89.7 1.9e-25 1 No_clan
Cotton_A_23667_CDS 42 192 39 201 PF00141.23 peroxidase Domain 2 145 229 167.9 2.7e-49 1 CL0617
Cotton_A_06972_CDS 101 369 96 371 PF00069.25 Pkinase Domain 6 260 264 146.7 7.9e-43 1 CL0016
Cotton_A_01378_CDS 12 183 10 197 PF01145.25 Band_7 Family 3 177 178 92.4 3.2e-26 1 CL0433
Cotton_A_21830_CDS 46 114 10 114 PF16881.5 LIAS_N Family 34 108 108 55.8 5.2e-15 1 No_clan
Cotton_A_21830_CDS 137 299 134 300 PF04055.21 Radical_SAM Domain 4 166 167 53.3 4e-14 1 CL0036
Cotton_A_28665_CDS 490 777 487 777 PF00069.25 Pkinase Domain 4 264 264 126.5 1.2e-36 1 CL0016
Cotton_A_28665_CDS 783 909 783 909 PF06479.12 Ribonuc_2-5A Family 1 127 127 148.6 1e-43 1 No_clan
Cotton_A_34953_CDS 86 99 85 101 PF07145.15 PAM2 Motif 2 15 18 22.5 5.7e-05 1 No_clan
Cotton_A_34953_CDS 166 222 166 232 PF00076.22 RRM_1 Domain 1 58 70 44.4 1.1e-11 1 CL0221
Cotton_A_34953_CDS 263 330 263 331 PF00076.22 RRM_1 Domain 1 69 70 32.2 6.7e-08 1 CL0221
Cotton_A_03246_CDS 2 189 1 189 PF01201.22 Ribosomal_S8e Family 9 137 137 171.4 1.1e-50 1 No_clan
Cotton_A_14702_CDS 171 218 171 219 PF13041.6 PPR_2 Repeat 1 49 50 43.3 3.1e-11 1 CL0020
Cotton_A_14702_CDS 246 275 246 276 PF01535.20 PPR Family 1 30 31 18.7 0.0014 1 CL0020
Cotton_A_14702_CDS 280 325 278 325 PF13041.6 PPR_2 Repeat 3 48 50 31.4 1.6e-07 1 CL0020
Cotton_A_14702_CDS 348 396 348 397 PF13041.6 PPR_2 Repeat 1 49 50 40.8 1.9e-10 1 CL0020
Cotton_A_14702_CDS 423 451 421 451 PF01535.20 PPR Family 3 31 31 15.4 0.016 1 CL0020
Cotton_A_14702_CDS 455 500 453 501 PF13041.6 PPR_2 Repeat 3 48 50 30.4 3.3e-07 1 CL0020
Cotton_A_14702_CDS 518 565 518 567 PF13041.6 PPR_2 Repeat 1 48 50 36.4 4.3e-09 1 CL0020
Cotton_A_02358_CDS 972 1118 971 1118 PF04096.14 Nucleoporin2 Family 2 149 149 153.6 4e-45 1 CL0661
Cotton_A_06233_CDS 66 426 64 427 PF01094.28 ANF_receptor Family 3 353 354 293.2 2.6e-87 1 CL0144
Cotton_A_22570_CDS 60 351 60 351 PF00069.25 Pkinase Domain 1 264 264 214.3 1.9e-63 1 CL0016
Cotton_A_08698_CDS 38 130 37 131 PF13943.6 WPP Domain 2 98 99 136.0 4.8e-40 1 No_clan
Cotton_A_04533_CDS 70 293 70 295 PF03009.17 GDPD Family 1 257 259 67.4 1.6e-18 1 CL0384
Cotton_A_17891_CDS 98 671 98 671 PF02705.16 K_trans Family 1 534 534 624.7 1.2e-187 1 CL0062
Cotton_A_35609_CDS 30 128 29 128 PF01657.17 Stress-antifung Family 2 95 95 47.2 2.6e-12 1 No_clan
Cotton_A_35609_CDS 149 238 142 239 PF01657.17 Stress-antifung Family 7 94 95 56.6 3e-15 1 No_clan
Cotton_A_35609_CDS 324 523 323 589 PF00069.25 Pkinase Domain 2 196 264 153.6 6.1e-45 1 CL0016
Cotton_A_09696_CDS 44 232 44 238 PF00106.25 adh_short Domain 1 189 195 156.1 7.4e-46 1 CL0063
Cotton_A_10600_CDS 5 337 3 338 PF01536.16 SAM_decarbox Family 3 354 355 342.1 3.3e-102 1 No_clan
Cotton_A_17722_CDS 135 351 135 366 PF00069.25 Pkinase Domain 1 212 264 209.8 4.5e-62 1 CL0016
Cotton_A_17950_CDS 56 93 56 94 PF08802.10 CytB6-F_Fe-S Domain 1 38 39 62.4 2.9e-17 1 CL0300
Cotton_A_17950_CDS 139 196 112 200 PF00355.26 Rieske Domain 26 85 89 45.3 6.3e-12 1 CL0516
Cotton_A_32342_CDS 88 588 88 588 PF03141.16 Methyltransf_29 Family 1 506 506 685.9 3.1e-206 1 CL0063
Cotton_A_02607_CDS 135 222 135 222 PF00736.19 EF1_GNE Domain 1 90 90 109.3 7.7e-32 1 No_clan
Cotton_A_31978_CDS 71 326 70 326 PF00685.27 Sulfotransfer_1 Domain 2 267 267 220.6 2.6e-65 1 CL0023
Cotton_A_31330_CDS 18 77 17 77 PF00046.29 Homeodomain Domain 3 57 57 64.6 5.4e-18 1 CL0123
Cotton_A_31167_CDS 79 221 78 221 PF11721.8 Malectin Domain 2 165 165 73.6 1.9e-20 1 CL0202
Cotton_A_31167_CDS 425 740 425 741 PF00225.23 Kinesin Domain 1 332 333 370.4 6.9e-111 1 CL0023
Cotton_A_15116_CDS 35 389 35 389 PF12819.7 Malectin_like Domain 1 336 336 118.3 4e-34 1 CL0202
Cotton_A_15829_CDS 54 166 54 169 PF00012.20 HSP70 Family 1 114 599 156.1 9.8e-46 1 CL0108
Cotton_A_24243_CDS 51 122 51 122 PF00295.17 Glyco_hydro_28 Domain 1 72 325 34.2 1.4e-08 1 CL0268
Cotton_A_40488_CDS 29 269 29 271 PF00573.22 Ribosomal_L4 Family 1 190 192 136.1 1.1e-39 1 No_clan
Cotton_A_40488_CDS 283 356 283 357 PF14374.6 Ribos_L4_asso_C Domain 1 75 76 100.6 3.7e-29 1 No_clan
Cotton_A_11644_CDS 316 661 316 662 PF12043.8 DUF3527 Family 1 350 351 357.3 1.2e-106 1 CL0395
Cotton_A_25033_CDS 24 88 24 89 PF04431.13 Pec_lyase_N Family 1 55 56 51.7 7.4e-14 1 No_clan
Cotton_A_25033_CDS 186 323 176 325 PF00544.19 Pec_lyase_C Domain 30 166 211 41.9 8.3e-11 1 CL0268
Cotton_A_04980_CDS 118 753 116 754 PF07814.13 WAPL Family 3 367 368 291.3 8.9e-87 1 No_clan
Cotton_A_01761_CDS 2 30 1 31 PF08079.12 Ribosomal_L30_N Domain 43 71 72 32.7 6.8e-08 1 No_clan
Cotton_A_01761_CDS 36 84 36 85 PF00327.20 Ribosomal_L30 Domain 1 49 51 64.1 7.7e-18 1 No_clan
Cotton_A_02221_CDS 36 96 18 99 PF15511.6 CENP-T_C Domain 19 79 108 34.4 1.8e-08 1 CL0012
Cotton_A_30604_CDS 1 96 1 96 PF01199.18 Ribosomal_L34e Family 1 94 94 129.7 3.8e-38 1 No_clan
Cotton_A_34451_CDS 8 76 2 77 PF02798.20 GST_N Domain 7 75 76 68.0 6.8e-19 1 CL0172
Cotton_A_34451_CDS 115 204 109 204 PF00043.25 GST_C Domain 7 93 93 61.2 8e-17 1 CL0497
Cotton_A_26485_CDS 10 57 10 57 PF00319.18 SRF-TF Domain 1 48 48 81.2 2.6e-23 1 No_clan
Cotton_A_26485_CDS 81 169 78 170 PF01486.17 K-box Family 4 92 93 84.0 6.2e-24 1 No_clan
Cotton_A_17475_CDS 239 367 239 367 PF02812.18 ELFV_dehydrog_N Domain 1 130 130 149.9 3.3e-44 1 CL0603
Cotton_A_17475_CDS 385 632 384 632 PF00208.21 ELFV_dehydrog Domain 2 243 243 210.4 3.2e-62 1 CL0063
Cotton_A_27257_CDS 51 89 51 141 PF00685.27 Sulfotransfer_1 Domain 1 38 267 21.6 0.00012 1 CL0023
Cotton_A_13863_CDS 55 158 53 165 PF00445.18 Ribonuclease_T2 Domain 3 117 182 70.2 2.6e-19 1 No_clan
Cotton_A_06266_CDS 7 184 6 185 PF02737.18 3HCDH_N Domain 2 179 180 206.5 2.8e-61 1 CL0063
Cotton_A_06266_CDS 187 283 187 283 PF00725.22 3HCDH Domain 1 97 97 117.6 2.8e-34 1 CL0106
Cotton_A_11453_CDS 1 48 1 59 PF03105.19 SPX Domain 1 48 384 46.6 4.4e-12 1 No_clan
Cotton_A_11453_CDS 121 169 115 170 PF03105.19 SPX Domain 335 383 384 43.8 3.3e-11 1 No_clan
Cotton_A_30399_CDS 82 227 80 240 PF00069.25 Pkinase Domain 3 145 264 110.2 1.1e-31 1 CL0016
Cotton_A_30399_CDS 259 388 254 388 PF00069.25 Pkinase Domain 145 264 264 70.8 1.1e-19 1 CL0016
Cotton_A_24708_CDS 84 279 82 285 PF00106.25 adh_short Domain 3 189 195 149.1 9.9e-44 1 CL0063
Cotton_A_08977_CDS 160 424 160 424 PF05705.14 DUF829 Domain 1 241 241 235.4 8.7e-70 1 CL0028
Cotton_A_09456_CDS 3 310 2 313 PF05653.14 Mg_trans_NIPA Family 2 290 295 81.1 7.5e-23 1 CL0184
Cotton_A_22905_CDS 108 307 108 307 PF03145.16 Sina Family 1 200 200 273.6 1.1e-81 1 CL0389
Cotton_A_17721_CDS 127 445 127 445 PF12215.8 Glyco_hydr_116N Family 1 312 312 352.9 1.7e-105 1 CL0103
Cotton_A_17721_CDS 561 921 561 921 PF04685.13 DUF608 Domain 1 361 361 527.8 1.4e-158 1 CL0059
Cotton_A_26642_CDS 179 302 173 306 PF01529.20 DHHC Family 7 122 134 96.2 1.7e-27 1 No_clan
Cotton_A_12466_CDS 182 444 171 444 PF07714.17 Pkinase_Tyr Domain 15 259 259 85.8 2.8e-24 1 CL0016
Cotton_A_07827_CDS 355 466 353 482 PF03385.17 STELLO Family 3 117 388 37.8 9.8e-10 1 CL0110
Cotton_A_24212_CDS 2 105 1 110 PF00282.19 Pyridoxal_deC Domain 8 110 375 98.1 4.4e-28 1 CL0061
Cotton_A_24212_CDS 109 307 104 307 PF00282.19 Pyridoxal_deC Domain 179 375 375 221.5 1.4e-65 1 CL0061
Cotton_A_05939_CDS 1 37 1 66 PF03105.19 SPX Domain 1 34 384 41.2 2e-10 1 No_clan
Cotton_A_05939_CDS 66 115 38 132 PF03105.19 SPX Domain 176 225 384 31.6 1.6e-07 1 No_clan
Cotton_A_05939_CDS 135 172 123 183 PF03105.19 SPX Domain 336 373 384 32.7 7.6e-08 1 No_clan
Cotton_A_17762_CDS 29 284 28 287 PF00704.28 Glyco_hydro_18 Domain 2 309 312 105.1 5.8e-30 1 CL0058
Cotton_A_35580_CDS 20 180 17 180 PF03248.13 Rer1 Family 4 171 171 241.6 3.7e-72 1 No_clan
Cotton_A_28945_CDS 5 89 5 90 PF01221.18 Dynein_light Domain 1 85 86 103.3 6.3e-30 1 No_clan
Cotton_A_38247_CDS 598 688 597 688 PF04576.15 Zein-binding Family 2 92 92 110.5 3.6e-32 1 No_clan
Cotton_A_11478_CDS 39 210 37 210 PF04062.14 P21-Arc Family 3 174 174 216.0 3.5e-64 1 No_clan
Cotton_A_36169_CDS 69 150 61 150 PF03004.14 Transposase_24 Family 51 135 142 29.0 9.6e-07 1 No_clan
Cotton_A_02458_CDS 33 110 11 110 PF14368.6 LTP_2 Family 22 97 97 46.4 3.1e-12 1 CL0482
Cotton_A_17194_CDS 211 411 191 423 PF01544.18 CorA Family 101 290 292 95.0 5e-27 1 No_clan
Cotton_A_29877_CDS 1 69 1 95 PF01061.24 ABC2_membrane Family 60 128 210 55.0 7.3e-15 1 CL0181
Cotton_A_39381_CDS 39 171 38 172 PF03018.14 Dirigent Family 2 147 148 103.4 9e-30 1 CL0650
Cotton_A_15688_CDS 69 343 69 343 PF00664.23 ABC_membrane Family 1 274 274 205.5 1.2e-60 1 CL0241
Cotton_A_15688_CDS 412 559 410 559 PF00005.27 ABC_tran Domain 3 137 137 119.6 1.3e-34 1 CL0023
Cotton_A_15688_CDS 727 999 727 1000 PF00664.23 ABC_membrane Family 1 273 274 194.8 2.2e-57 1 CL0241
Cotton_A_15688_CDS 1068 1217 1067 1217 PF00005.27 ABC_tran Domain 2 137 137 123.8 7e-36 1 CL0023
Cotton_A_31639_CDS 34 220 34 220 PF00479.22 G6PD_N Domain 1 177 177 199.8 5.3e-59 1 CL0063
Cotton_A_31639_CDS 222 501 222 509 PF02781.16 G6PD_C Domain 1 287 290 390.6 3.9e-117 1 CL0139
Cotton_A_19416_CDS 262 313 262 313 PF00249.31 Myb_DNA-binding Domain 1 46 46 30.3 3.5e-07 1 CL0123
Cotton_A_10947_CDS 73 161 72 203 PF03634.13 TCP Family 2 90 156 103.5 1.6e-29 1 No_clan
Cotton_A_04636_CDS 206 243 204 244 PF00514.23 Arm Repeat 3 40 41 30.0 3.6e-07 1 CL0020
Cotton_A_04636_CDS 288 326 287 326 PF00514.23 Arm Repeat 3 41 41 24.9 1.4e-05 1 CL0020
Cotton_A_22970_CDS 37 164 36 165 PF12353.8 eIF3g Family 2 124 125 122.9 9.5e-36 1 CL0511
Cotton_A_22970_CDS 218 284 218 288 PF00076.22 RRM_1 Domain 1 66 70 71.5 3.8e-20 1 CL0221
Cotton_A_12617_CDS 74 345 70 345 PF07714.17 Pkinase_Tyr Domain 6 259 259 156.6 6.9e-46 1 CL0016
Cotton_A_12251_CDS 13 74 12 78 PF00538.19 Linker_histone Domain 2 64 74 41.0 1.9e-10 1 CL0123
Cotton_A_12251_CDS 86 94 86 98 PF02178.19 AT_hook Motif 1 9 13 7.3 5.1 1 No_clan
Cotton_A_12251_CDS 109 119 108 120 PF02178.19 AT_hook Motif 2 12 13 13.2 0.062 1 No_clan
Cotton_A_12251_CDS 130 140 130 142 PF02178.19 AT_hook Motif 1 11 13 9.7 0.83 1 No_clan
Cotton_A_12251_CDS 158 169 158 170 PF02178.19 AT_hook Motif 1 12 13 12.9 0.075 1 No_clan
Cotton_A_28505_CDS 73 481 71 482 PF01490.18 Aa_trans Family 3 408 409 212.7 6.9e-63 1 CL0062
Cotton_A_19760_CDS 53 397 53 397 PF00274.19 Glycolytic Domain 1 349 349 521.3 8.6e-157 1 CL0035
Cotton_A_12193_CDS 12 134 2 135 PF02765.17 POT1 Domain 10 142 143 75.4 3.7e-21 1 CL0021
Cotton_A_11512_CDS 4 59 4 62 PF00226.31 DnaJ Domain 1 55 63 77.3 7e-22 1 CL0392
Cotton_A_11512_CDS 185 343 185 343 PF01556.18 DnaJ_C Domain 1 148 148 140.6 3.9e-41 1 No_clan
Cotton_A_39754_CDS 36 72 35 73 PF08263.12 LRRNT_2 Family 2 40 41 37.3 2.5e-09 1 No_clan
Cotton_A_39754_CDS 353 406 351 406 PF13855.6 LRR_8 Repeat 9 61 61 28.4 9.9e-07 1 CL0022
Cotton_A_39754_CDS 421 443 421 443 PF00560.33 LRR_1 Repeat 1 23 23 12.5 0.17 1 CL0022
Cotton_A_39754_CDS 882 1152 882 1154 PF00069.25 Pkinase Domain 1 260 264 158.7 1.8e-46 1 CL0016
Cotton_A_04416_CDS 32 268 31 270 PF00262.18 Calreticulin Family 1 254 367 194.3 2.7e-57 1 CL0004
Cotton_A_04416_CDS 269 342 268 342 PF00262.18 Calreticulin Family 293 367 367 71.9 4.4e-20 1 CL0004
Cotton_A_04416_CDS 497 644 485 644 PF00753.27 Lactamase_B Domain 15 197 197 61.7 9.4e-17 1 CL0381
Cotton_A_04416_CDS 645 729 645 729 PF16123.5 HAGH_C Family 1 80 80 89.6 1.4e-25 1 CL0381
Cotton_A_03868_CDS 29 66 27 67 PF08263.12 LRRNT_2 Family 3 40 41 20.7 0.00037 1 No_clan
Cotton_A_03868_CDS 117 175 116 175 PF13855.6 LRR_8 Repeat 3 61 61 29.9 3.5e-07 1 CL0022
Cotton_A_03868_CDS 480 750 478 753 PF00069.25 Pkinase Domain 3 260 264 138.2 3.2e-40 1 CL0016
Cotton_A_33898_CDS 220 272 219 272 PF13637.6 Ank_4 Repeat 2 55 55 34.7 1.9e-08 1 CL0465
Cotton_A_33898_CDS 328 375 324 376 PF13857.6 Ank_5 Repeat 10 55 56 31.1 2.1e-07 1 CL0465
Cotton_A_13537_CDS 44 116 10 116 PF14368.6 LTP_2 Family 23 97 97 38.5 9.2e-10 1 CL0482
Cotton_A_02335_CDS 8 35 7 35 PF13181.6 TPR_8 Repeat 7 34 34 13.3 0.073 1 CL0020
Cotton_A_02335_CDS 71 103 70 103 PF00515.28 TPR_1 Repeat 2 34 34 31.3 1.1e-07 1 CL0020
Cotton_A_02335_CDS 139 193 139 193 PF17830.1 STI1 Domain 1 55 55 75.8 1.8e-21 1 No_clan
Cotton_A_02335_CDS 400 441 400 441 PF13414.6 TPR_11 Repeat 1 42 42 34.1 1.6e-08 1 CL0020
Cotton_A_02335_CDS 523 575 522 576 PF17830.1 STI1 Domain 3 54 55 48.5 6.2e-13 1 No_clan
Cotton_A_33238_CDS 86 500 78 512 PF00067.22 p450 Domain 22 448 463 272.8 4.9e-81 1 No_clan
Cotton_A_05315_CDS 114 296 114 298 PF00005.27 ABC_tran Domain 1 135 137 59.2 6.1e-16 1 CL0023
Cotton_A_05315_CDS 450 662 449 662 PF01061.24 ABC2_membrane Family 2 210 210 155.9 9e-46 1 CL0181
Cotton_A_05315_CDS 667 721 667 727 PF08370.11 PDR_assoc Family 1 56 65 79.1 1.5e-22 1 No_clan
Cotton_A_01620_CDS 235 602 234 602 PF03514.14 GRAS Family 2 374 374 375.8 2e-112 1 CL0063
Cotton_A_03249_CDS 141 307 119 314 PF00305.19 Lipoxygenase Domain 76 213 674 50.8 9.2e-14 1 No_clan
Cotton_A_01200_CDS 9 276 6 277 PF01875.17 Memo Family 13 270 271 254.2 1.1e-75 1 CL0283
Cotton_A_36829_CDS 139 322 139 322 PF00270.29 DEAD Domain 1 176 176 138.0 2.7e-40 1 CL0023
Cotton_A_36829_CDS 358 469 357 469 PF00271.31 Helicase_C Family 2 111 111 88.5 3.6e-25 1 CL0023
Cotton_A_08206_CDS 19 103 8 103 PF14368.6 LTP_2 Family 14 97 97 62.9 2.2e-17 1 CL0482
Cotton_A_30115_CDS 31 87 30 88 PF02701.15 zf-Dof Family 2 58 59 112.7 6.5e-33 1 No_clan
Cotton_A_23766_CDS 68 389 67 389 PF03405.14 FA_desaturase_2 Domain 2 326 326 533.4 1.6e-160 1 CL0044
Cotton_A_22040_CDS 12 160 11 160 PF00582.26 Usp Domain 4 141 141 104.0 9e-30 1 CL0039
Cotton_A_00471_CDS 11 270 11 270 PF00685.27 Sulfotransfer_1 Domain 1 267 267 225.2 9.9e-67 1 CL0023
Cotton_A_31382_CDS 69 186 69 186 PF00917.26 MATH Domain 1 113 113 85.5 2.6e-24 1 CL0389
Cotton_A_13470_CDS 74 177 74 177 PF03168.13 LEA_2 Domain 1 101 101 40.7 2.7e-10 1 CL0159
Cotton_A_02114_CDS 84 149 68 151 PF07885.16 Ion_trans_2 Family 16 77 79 56.4 2.1e-15 1 CL0030
Cotton_A_02114_CDS 194 265 186 266 PF07885.16 Ion_trans_2 Family 4 78 79 43.5 2.2e-11 1 CL0030
Cotton_A_03360_CDS 1 214 1 215 PF07279.11 DUF1442 Family 1 217 218 333.1 5.5e-100 1 CL0063
Cotton_A_21634_CDS 30 236 8 236 PF13561.6 adh_short_C2 Domain 34 234 234 182.3 1e-53 1 CL0063
Cotton_A_32219_CDS 83 134 83 134 PF12906.7 RINGv Domain 1 48 48 37.8 1.6e-09 1 CL0229
Cotton_A_35723_CDS 5 41 4 49 PF12937.7 F-box-like Domain 2 37 48 25.5 8.8e-06 1 CL0271
Cotton_A_05178_CDS 1 190 1 190 PF02739.16 5_3_exonuc_N Domain 3 159 159 136.2 9e-40 1 CL0280
Cotton_A_05178_CDS 193 289 192 291 PF01367.20 5_3_exonuc Domain 2 95 97 88.7 2.8e-25 1 CL0464
Cotton_A_01982_CDS 50 86 49 87 PF13436.6 Gly-zipper_OmpA Family 4 39 44 25.4 8.6e-06 1 CL0500
Cotton_A_01982_CDS 191 234 190 234 PF13639.6 zf-RING_2 Domain 2 44 44 44.3 1.6e-11 1 CL0229
Cotton_A_03991_CDS 66 156 65 167 PF00919.20 UPF0004 Family 2 83 98 52.4 4e-14 1 CL0304
Cotton_A_03991_CDS 217 388 213 388 PF04055.21 Radical_SAM Domain 5 167 167 69.2 5.4e-19 1 CL0036
Cotton_A_01257_CDS 16 62 12 83 PF13774.6 Longin Domain 22 67 84 28.5 1.1e-06 1 No_clan
Cotton_A_01257_CDS 88 145 87 148 PF00957.21 Synaptobrevin Family 2 59 89 56.5 1.8e-15 1 CL0445
Cotton_A_07776_CDS 18 125 16 128 PF02466.19 Tim17 Family 4 108 111 49.0 6.7e-13 1 No_clan
Cotton_A_31525_CDS 8 200 7 200 PF06552.12 TOM20_plant Family 2 187 187 308.2 1.9e-92 1 CL0020
Cotton_A_39904_CDS 46 229 45 229 PF06206.11 CpeT Family 2 181 182 162.3 1.2e-47 1 CL0116
Cotton_A_03075_CDS 132 193 132 193 PF00226.31 DnaJ Domain 1 63 63 85.8 1.6e-24 1 CL0392
Cotton_A_03075_CDS 288 358 283 375 PF09320.11 DUF1977 Family 4 72 105 38.7 9.5e-10 1 No_clan
Cotton_A_25159_CDS 10 196 8 196 PF04525.12 LOR Domain 3 187 187 167.9 1.8e-49 1 CL0395
Cotton_A_12119_CDS 155 207 155 207 PF05739.19 SNARE Family 1 53 53 32.0 9e-08 1 No_clan
Cotton_A_12606_CDS 23 437 22 437 PF01704.18 UDPGP Family 2 413 413 534.3 1.6e-160 1 CL0110
Cotton_A_05180_CDS 110 384 108 384 PF07714.17 Pkinase_Tyr Domain 4 259 259 140.8 4.8e-41 1 CL0016
Cotton_A_27150_CDS 69 93 68 95 PF05678.14 VQ Motif 2 26 28 31.9 6.6e-08 1 No_clan
Cotton_A_29168_CDS 41 97 41 97 PF08246.12 Inhibitor_I29 Domain 2 58 58 64.4 9.3e-18 1 No_clan
Cotton_A_29168_CDS 124 318 124 326 PF00112.23 Peptidase_C1 Domain 1 197 218 239.3 4.8e-71 1 CL0125
Cotton_A_38145_CDS 328 441 327 441 PF01751.22 Toprim Family 2 103 103 73.8 1.1e-20 1 CL0413
Cotton_A_38145_CDS 456 889 455 891 PF01131.20 Topoisom_bac Family 2 411 413 365.6 3.5e-109 1 No_clan
Cotton_A_38145_CDS 933 969 932 971 PF01396.19 zf-C4_Topoisom Family 2 35 39 34.3 1.5e-08 1 CL0167
Cotton_A_38145_CDS 996 1055 996 1056 PF13368.6 Toprim_C_rpt Domain 1 53 56 41.1 1.3e-10 1 No_clan
Cotton_A_38145_CDS 1057 1107 1057 1112 PF13368.6 Toprim_C_rpt Domain 1 51 56 28.6 1e-06 1 No_clan
Cotton_A_05027_CDS 8 81 2 84 PF00464.19 SHMT Domain 18 85 399 70.8 7.7e-20 1 CL0061
Cotton_A_08954_CDS 71 106 71 111 PF01411.19 tRNA-synt_2c Family 1 36 552 38.7 4.3e-10 1 CL0040
Cotton_A_08954_CDS 154 694 149 694 PF01411.19 tRNA-synt_2c Family 36 552 552 667.7 1.2e-200 1 CL0040
Cotton_A_08954_CDS 796 854 796 855 PF07973.14 tRNA_SAD Domain 1 43 44 59.4 2.6e-16 1 CL0094
Cotton_A_08954_CDS 916 1056 909 1058 PF02272.19 DHHA1 Family 2 136 138 45.1 1.3e-11 1 No_clan
Cotton_A_09994_CDS 7 253 6 253 PF00335.20 Tetraspanin Family 2 229 229 105.4 3.5e-30 1 CL0347
Cotton_A_34921_CDS 664 815 663 817 PF07035.12 Mic1 Family 2 154 157 142.7 7.3e-42 1 No_clan
Cotton_A_02804_CDS 79 157 77 166 PF01259.18 SAICAR_synt Family 6 90 252 40.6 2.2e-10 1 No_clan
Cotton_A_07599_CDS 51 211 51 211 PF01554.18 MatE Family 1 161 161 124.7 2.6e-36 1 CL0222
Cotton_A_07599_CDS 272 434 272 435 PF01554.18 MatE Family 1 160 161 101.0 5.1e-29 1 CL0222
Cotton_A_18181_CDS 114 170 114 171 PF03106.15 WRKY Domain 1 58 59 85.9 1.6e-24 1 CL0274
Cotton_A_27779_CDS 27 70 27 82 PF04145.15 Ctr Family 1 43 148 29.6 9.2e-07 1 No_clan
Cotton_A_27779_CDS 88 130 77 130 PF04145.15 Ctr Family 106 148 148 38.4 1.8e-09 1 No_clan
Cotton_A_22681_CDS 5 158 3 158 PF00582.26 Usp Domain 3 141 141 110.3 1.1e-31 1 CL0039
Cotton_A_15253_CDS 310 412 309 413 PF01399.27 PCI Domain 2 104 105 75.0 5.6e-21 1 CL0123
Cotton_A_15253_CDS 416 481 416 482 PF08375.11 Rpn3_C Family 1 66 67 86.8 9.8e-25 1 No_clan
Cotton_A_30342_CDS 78 159 78 159 PF03330.18 DPBB_1 Domain 1 83 83 80.9 6.2e-23 1 CL0199
Cotton_A_30342_CDS 170 247 170 247 PF01357.21 Pollen_allerg_1 Domain 1 80 80 103.3 5.2e-30 1 CL0159
Cotton_A_20806_CDS 1 47 1 48 PF01657.17 Stress-antifung Family 51 94 95 36.9 4.3e-09 1 No_clan
Cotton_A_26939_CDS 58 104 51 106 PF07000.11 DUF1308 Domain 110 156 164 33.3 4.2e-08 1 CL0280
Cotton_A_20299_CDS 133 251 130 268 PF13401.6 AAA_22 Domain 4 116 137 60.8 1.6e-16 1 CL0023
Cotton_A_20299_CDS 315 349 310 366 PF17872.1 AAA_lid_10 Domain 47 81 99 29.4 6.7e-07 1 CL0671
Cotton_A_20299_CDS 418 496 418 496 PF09079.11 Cdc6_C Domain 1 84 84 56.0 3e-15 1 CL0123
Cotton_A_11876_CDS 310 359 309 359 PF02042.15 RWP-RK Family 2 48 49 38.3 9.7e-10 1 No_clan
Cotton_A_30280_CDS 73 121 72 122 PF00628.29 PHD Domain 2 51 52 41.6 8.4e-11 1 CL0390
Cotton_A_28359_CDS 35 85 35 86 PF00847.20 AP2 Domain 1 53 54 48.2 9.5e-13 1 CL0081
Cotton_A_00877_CDS 18 290 17 290 PF06454.11 DUF1084 Family 2 273 273 472.3 4.3e-142 1 No_clan
Cotton_A_22620_CDS 93 445 86 445 PF07517.14 SecA_DEAD Domain 9 290 290 354.1 5.4e-106 1 CL0023
Cotton_A_22620_CDS 295 401 293 401 PF01043.20 SecA_PP_bind Domain 3 111 111 121.3 2.9e-35 1 No_clan
Cotton_A_22620_CDS 751 965 751 967 PF07516.13 SecA_SW Family 1 197 199 182.7 8.2e-54 1 No_clan
Cotton_A_00372_CDS 118 184 117 184 PF02207.20 zf-UBR Family 2 70 70 71.7 4e-20 1 No_clan
Cotton_A_22911_CDS 10 29 9 33 PF13202.6 EF-hand_5 Domain 2 21 25 22.0 7.6e-05 1 CL0220
Cotton_A_22911_CDS 103 166 101 167 PF13499.6 EF-hand_7 Domain 3 70 71 36.0 7e-09 1 CL0220
Cotton_A_37814_CDS 92 398 79 399 PF00067.22 p450 Domain 31 349 463 169.6 9.9e-50 1 No_clan
Cotton_A_08019_CDS 277 384 269 387 PF13456.6 RVT_3 Domain 12 120 124 73.3 1.5e-20 1 CL0219
Cotton_A_31414_CDS 38 212 36 214 PF02779.24 Transket_pyr Domain 3 176 178 149.9 5.8e-44 1 CL0254
Cotton_A_31414_CDS 229 348 228 348 PF02780.20 Transketolase_C Domain 2 124 124 122.1 1.2e-35 1 CL0591
Cotton_A_29264_CDS 35 78 34 78 PF02671.21 PAH Repeat 2 45 45 40.7 1.9e-10 1 No_clan
Cotton_A_29264_CDS 117 151 111 151 PF02671.21 PAH Repeat 2 44 45 23.5 4.3e-05 1 No_clan
Cotton_A_08704_CDS 30 486 29 491 PF00067.22 p450 Domain 2 457 463 299.4 4.3e-89 1 No_clan
Cotton_A_02996_CDS 30 69 28 69 PF08263.12 LRRNT_2 Family 3 41 41 29.1 8.8e-07 1 No_clan
Cotton_A_02996_CDS 926 1033 925 1043 PF00069.25 Pkinase Domain 2 103 264 53.3 2.4e-14 1 CL0016
Cotton_A_04408_CDS 106 380 82 380 PF03514.14 GRAS Family 105 374 374 80.2 1.4e-22 1 CL0063
Cotton_A_21743_CDS 6 319 5 329 PF01494.19 FAD_binding_3 Family 3 322 349 73.4 1.9e-20 1 CL0063
Cotton_A_13392_CDS 84 112 83 112 PF01535.20 PPR Family 2 30 31 14.8 0.025 1 CL0020
Cotton_A_13392_CDS 118 147 118 148 PF01535.20 PPR Family 1 30 31 12.4 0.14 1 CL0020
Cotton_A_13392_CDS 187 217 187 217 PF01535.20 PPR Family 1 31 31 25.4 1e-05 1 CL0020
Cotton_A_13392_CDS 218 241 218 242 PF01535.20 PPR Family 1 24 31 22.0 0.00013 1 CL0020
Cotton_A_17818_CDS 2 166 1 167 PF02536.14 mTERF Family 151 313 314 65.1 5.1e-18 1 No_clan
Cotton_A_02753_CDS 59 199 59 200 PF03033.20 Glyco_transf_28 Family 1 138 139 114.2 4.6e-33 1 CL0113
Cotton_A_02753_CDS 255 394 255 399 PF04101.16 Glyco_tran_28_C Domain 1 141 167 111.8 3.2e-32 1 CL0113
Cotton_A_29142_CDS 75 177 75 178 PF03168.13 LEA_2 Domain 1 100 101 40.3 3.4e-10 1 CL0159
Cotton_A_14369_CDS 18 157 18 157 PF01138.21 RNase_PH Domain 1 132 132 128.1 3e-37 1 CL0329
Cotton_A_02742_CDS 191 242 191 242 PF00249.31 Myb_DNA-binding Domain 1 46 46 24.8 1.8e-05 1 CL0123
Cotton_A_06310_CDS 323 667 323 667 PF04515.12 Choline_transpo Family 1 326 326 268.1 1e-79 1 No_clan
Cotton_A_07249_CDS 81 125 78 125 PF13855.6 LRR_8 Repeat 16 61 61 40.5 1.7e-10 1 CL0022
Cotton_A_07249_CDS 279 294 279 300 PF13516.6 LRR_6 Repeat 3 18 24 8.9 1.7 1 CL0022
Cotton_A_07249_CDS 348 364 347 364 PF13516.6 LRR_6 Repeat 2 18 24 15.3 0.015 1 CL0022
Cotton_A_07249_CDS 522 798 518 799 PF07714.17 Pkinase_Tyr Domain 5 258 259 93.3 1.5e-26 1 CL0016
Cotton_A_03297_CDS 29 337 29 338 PF00657.22 Lipase_GDSL Family 2 199 200 63.1 3.3e-17 1 CL0264
Cotton_A_38795_CDS 207 238 203 239 PF00400.32 WD40 Repeat 7 37 38 33.3 5.6e-08 1 CL0186
Cotton_A_38795_CDS 290 324 288 325 PF00400.32 WD40 Repeat 3 37 38 25.0 2.4e-05 1 CL0186
Cotton_A_38795_CDS 330 366 329 366 PF00400.32 WD40 Repeat 2 37 38 21.2 0.00037 1 CL0186
Cotton_A_28224_CDS 175 200 174 201 PF01535.20 PPR Family 5 30 31 27.6 2.1e-06 1 CL0020
Cotton_A_28224_CDS 203 252 203 252 PF13041.6 PPR_2 Repeat 1 50 50 56.7 2e-15 1 CL0020
Cotton_A_28224_CDS 277 306 276 306 PF01535.20 PPR Family 2 31 31 11.9 0.22 1 CL0020
Cotton_A_17179_CDS 77 415 77 418 PF02401.18 LYTB Family 1 260 264 272.5 3e-81 1 No_clan
Cotton_A_10346_CDS 102 329 101 330 PF01048.20 PNP_UDP_1 Domain 70 233 234 92.9 1.7e-26 1 CL0408
Cotton_A_21858_CDS 33 112 32 112 PF02298.17 Cu_bind_like Domain 2 84 84 100.0 5.8e-29 1 CL0026
Cotton_A_35190_CDS 92 510 82 512 PF00067.22 p450 Domain 31 461 463 249.6 5.3e-74 1 No_clan
Cotton_A_27294_CDS 2 143 1 152 PF05903.14 Peptidase_C97 Domain 2 139 151 135.4 1.3e-39 1 CL0125
Cotton_A_03673_CDS 108 125 107 126 PF00612.27 IQ Motif 2 19 21 21.8 9.8e-05 1 CL0220
Cotton_A_06836_CDS 92 362 91 363 PF00483.23 NTP_transferase Family 2 247 248 249.3 4.1e-74 1 CL0110
Cotton_A_02944_CDS 25 97 22 98 PF07524.13 Bromo_TP Domain 4 76 77 71.4 4.6e-20 1 CL0012
Cotton_A_34464_CDS 10 242 10 283 PF05368.13 NmrA Family 1 228 233 179.5 7.4e-53 1 CL0063
Cotton_A_32862_CDS 82 134 81 141 PF01230.23 HIT Domain 2 49 98 46.2 5.9e-12 1 CL0265
Cotton_A_06252_CDS 146 207 145 208 PF11789.8 zf-Nse Domain 2 56 57 45.2 5.8e-12 1 CL0229
Cotton_A_38079_CDS 11 43 9 65 PF00249.31 Myb_DNA-binding Domain 3 34 46 29.7 5.3e-07 1 CL0123
Cotton_A_38079_CDS 306 364 292 366 PF00439.25 Bromodomain Domain 25 82 84 28.0 1.8e-06 1 No_clan
Cotton_A_07031_CDS 195 276 195 289 PF12066.8 DUF3546 Family 1 82 110 81.4 5e-23 1 No_clan
Cotton_A_07031_CDS 432 638 432 640 PF04959.13 ARS2 Family 1 193 195 151.8 2.9e-44 1 CL0361
Cotton_A_38917_CDS 7 103 7 105 PF03195.14 LOB Family 1 97 99 139.2 5.3e-41 1 No_clan
Cotton_A_23321_CDS 92 269 91 273 PF06472.15 ABC_membrane_2 Family 2 179 269 139.7 1.1e-40 1 CL0241
Cotton_A_31522_CDS 16 143 16 143 PF02365.15 NAM Family 1 126 126 119.6 1.5e-34 1 No_clan
Cotton_A_26074_CDS 105 363 104 370 PF00520.31 Ion_trans Family 2 238 245 85.4 3.5e-24 1 CL0030
Cotton_A_26074_CDS 458 542 456 544 PF00027.29 cNMP_binding Domain 3 87 89 63.4 1.6e-17 1 CL0029
Cotton_A_26074_CDS 590 679 587 679 PF12796.7 Ank_2 Repeat 4 83 83 59.4 3.8e-16 1 CL0465
Cotton_A_26074_CDS 685 765 684 773 PF12796.7 Ank_2 Repeat 2 72 83 41.5 1.5e-10 1 CL0465
Cotton_A_26074_CDS 790 859 790 859 PF11834.8 KHA Family 1 67 67 80.5 6.8e-23 1 No_clan
Cotton_A_26609_CDS 40 288 36 288 PF01209.18 Ubie_methyltran Family 4 233 233 284.9 3.8e-85 1 CL0063
Cotton_A_31971_CDS 56 119 54 189 PF03634.13 TCP Family 3 66 156 87.8 1.1e-24 1 No_clan
Cotton_A_25102_CDS 76 253 76 253 PF02330.16 MAM33 Domain 1 212 212 158.6 2.1e-46 1 No_clan
Cotton_A_38436_CDS 70 120 69 121 PF00847.20 AP2 Domain 2 53 54 48.7 6.4e-13 1 CL0081
Cotton_A_07253_CDS 43 457 42 458 PF00450.22 Peptidase_S10 Domain 2 418 419 479.4 1.3e-143 1 CL0028
Cotton_A_06853_CDS 5 52 4 53 PF00249.31 Myb_DNA-binding Domain 2 45 46 24.5 2.3e-05 1 CL0123
Cotton_A_01336_CDS 298 571 297 572 PF01803.16 LIM_bind Family 2 240 241 190.2 4.2e-56 1 No_clan
Cotton_A_39222_CDS 25 169 24 169 PF04043.15 PMEI Domain 2 154 154 94.9 5.8e-27 1 No_clan
Cotton_A_03308_CDS 63 119 63 119 PF00226.31 DnaJ Domain 1 63 63 67.0 1.2e-18 1 CL0392
Cotton_A_03308_CDS 167 380 167 380 PF01556.18 DnaJ_C Domain 1 148 148 128.9 1.5e-37 1 No_clan
Cotton_A_03308_CDS 194 253 194 254 PF00684.19 DnaJ_CXXCXGXG Domain 1 66 67 39.3 6.4e-10 1 No_clan
Cotton_A_36843_CDS 54 529 52 534 PF09731.9 Mitofilin Family 2 502 623 102.3 3.2e-29 1 No_clan
Cotton_A_36843_CDS 588 693 584 693 PF09731.9 Mitofilin Family 516 623 623 94.0 9.9e-27 1 No_clan
Cotton_A_26553_CDS 8 43 8 45 PF00280.18 potato_inhibit Domain 1 37 64 45.7 7.9e-12 1 CL0367
Cotton_A_15004_CDS 174 343 165 343 PF14381.6 EDR1 Family 32 200 200 194.6 1.5e-57 1 CL0125
Cotton_A_15004_CDS 721 976 720 978 PF07714.17 Pkinase_Tyr Domain 2 257 259 208.6 9.7e-62 1 CL0016
Cotton_A_26053_CDS 53 103 52 103 PF00249.31 Myb_DNA-binding Domain 2 46 46 32.8 5.8e-08 1 CL0123
Cotton_A_19258_CDS 263 295 259 296 PF00400.32 WD40 Repeat 6 37 38 28.3 2.1e-06 1 CL0186
Cotton_A_19258_CDS 363 398 362 399 PF00400.32 WD40 Repeat 2 37 38 25.7 1.5e-05 1 CL0186
Cotton_A_19258_CDS 405 441 403 441 PF00400.32 WD40 Repeat 3 38 38 24.6 3.3e-05 1 CL0186
Cotton_A_31565_CDS 138 452 138 453 PF10250.9 O-FucT Family 1 335 336 228.2 2.1e-67 1 CL0113
Cotton_A_39245_CDS 126 236 124 237 PF14691.6 Fer4_20 Domain 3 112 113 69.6 1.8e-19 1 CL0344
Cotton_A_39245_CDS 250 538 249 541 PF07992.14 Pyr_redox_2 Domain 2 255 294 64.6 8.4e-18 1 CL0063
Cotton_A_41274_CDS 19 479 17 483 PF00232.18 Glyco_hydro_1 Domain 3 449 453 570.5 1.9e-171 1 CL0058
Cotton_A_08577_CDS 41 444 34 445 PF00501.28 AMP-binding Family 9 422 423 365.8 2.3e-109 1 CL0378
Cotton_A_08577_CDS 453 528 453 528 PF13193.6 AMP-binding_C Domain 1 76 76 59.0 7e-16 1 CL0531
Cotton_A_33477_CDS 11 134 11 134 PF02365.15 NAM Family 1 126 126 129.2 1.6e-37 1 No_clan
Cotton_A_36972_CDS 2 116 1 116 PF00252.18 Ribosomal_L16 Family 15 132 132 149.4 5.5e-44 1 No_clan
Cotton_A_02166_CDS 4 225 1 229 PF01255.19 Prenyltransf Family 19 218 224 226.2 3.4e-67 1 No_clan
Cotton_A_28414_CDS 98 240 93 245 PF00931.22 NB-ARC Domain 6 149 252 95.2 3.6e-27 1 CL0023
Cotton_A_30159_CDS 8 57 8 57 PF13041.6 PPR_2 Repeat 1 50 50 56.3 2.7e-15 1 CL0020
Cotton_A_30159_CDS 73 105 73 106 PF12854.7 PPR_1 Repeat 1 33 34 46.4 2.3e-12 1 CL0020
Cotton_A_05094_CDS 64 163 61 167 PF05266.14 DUF724 Family 84 183 188 38.7 9e-10 1 No_clan
Cotton_A_20218_CDS 62 283 62 283 PF00856.28 SET Family 1 169 169 35.8 1e-08 1 No_clan
Cotton_A_20218_CDS 341 453 331 454 PF09273.11 Rubis-subs-bind Domain 14 128 129 48.3 1.5e-12 1 No_clan
Cotton_A_27792_CDS 20 34 19 34 PF00098.23 zf-CCHC Domain 2 16 18 22.0 0.00012 1 CL0511
Cotton_A_27792_CDS 46 62 45 62 PF00098.23 zf-CCHC Domain 2 18 18 17.4 0.0034 1 CL0511
Cotton_A_27792_CDS 84 100 83 100 PF00098.23 zf-CCHC Domain 2 18 18 17.7 0.0027 1 CL0511
Cotton_A_00681_CDS 11 77 4 78 PF02519.14 Auxin_inducible Family 23 89 90 88.1 3.2e-25 1 No_clan
Cotton_A_22482_CDS 55 503 55 509 PF00067.22 p450 Domain 1 455 463 326.4 2.7e-97 1 No_clan
Cotton_A_04066_CDS 48 76 44 91 PF01208.17 URO-D Domain 5 33 346 32.6 4.6e-08 1 CL0160
Cotton_A_04066_CDS 107 408 95 409 PF01208.17 URO-D Domain 39 345 346 338.5 4.5e-101 1 CL0160
Cotton_A_24117_CDS 2 143 1 146 PF00106.25 adh_short Domain 27 143 195 54.7 8.4e-15 1 CL0063
Cotton_A_15828_CDS 1 130 1 132 PF00012.20 HSP70 Family 468 597 599 110.6 5.8e-32 1 CL0108
Cotton_A_01069_CDS 129 177 129 178 PF13041.6 PPR_2 Repeat 1 48 50 35.9 6.2e-09 1 CL0020
Cotton_A_01069_CDS 202 223 199 227 PF01535.20 PPR Family 4 25 31 13.7 0.057 1 CL0020
Cotton_A_01069_CDS 230 260 230 260 PF01535.20 PPR Family 1 31 31 15.4 0.016 1 CL0020
Cotton_A_01069_CDS 410 434 407 437 PF01535.20 PPR Family 4 28 31 15.9 0.012 1 CL0020
Cotton_A_01069_CDS 438 463 438 466 PF01535.20 PPR Family 1 26 31 25.0 1.4e-05 1 CL0020
Cotton_A_01069_CDS 471 497 470 499 PF01535.20 PPR Family 2 28 31 19.6 0.00074 1 CL0020
Cotton_A_01069_CDS 508 532 506 534 PF01535.20 PPR Family 3 27 31 14.4 0.034 1 CL0020
Cotton_A_01069_CDS 606 733 606 733 PF14432.6 DYW_deaminase Family 1 127 127 112.9 8.6e-33 1 CL0109
Cotton_A_00760_CDS 11 83 9 83 PF00111.27 Fer2 Domain 3 78 78 64.8 5e-18 1 CL0486
Cotton_A_30072_CDS 72 121 72 122 PF13041.6 PPR_2 Repeat 1 49 50 32.3 8.3e-08 1 CL0020
Cotton_A_30072_CDS 149 175 146 176 PF01535.20 PPR Family 4 30 31 18.8 0.0013 1 CL0020
Cotton_A_30072_CDS 177 207 177 207 PF01535.20 PPR Family 1 31 31 24.8 1.7e-05 1 CL0020
Cotton_A_30072_CDS 236 284 236 285 PF13041.6 PPR_2 Repeat 1 49 50 46.3 3.7e-12 1 CL0020
Cotton_A_30072_CDS 312 333 309 339 PF01535.20 PPR Family 4 25 31 15.5 0.015 1 CL0020
Cotton_A_30072_CDS 337 385 337 386 PF13041.6 PPR_2 Repeat 1 49 50 37.6 1.8e-09 1 CL0020
Cotton_A_30072_CDS 412 433 411 434 PF01535.20 PPR Family 2 23 31 10.8 0.49 1 CL0020
Cotton_A_06509_CDS 99 390 99 403 PF03552.14 Cellulose_synt Family 1 294 722 308.4 1.1e-91 1 CL0110
Cotton_A_06509_CDS 409 727 398 736 PF03552.14 Cellulose_synt Family 389 699 722 150.4 7.2e-44 1 CL0110
Cotton_A_20657_CDS 408 724 392 725 PF00176.23 SNF2_N Family 47 349 350 206.2 5.4e-61 1 CL0023
Cotton_A_20657_CDS 750 856 743 856 PF00271.31 Helicase_C Family 8 111 111 67.2 1.4e-18 1 CL0023
Cotton_A_28334_CDS 11 137 11 137 PF02365.15 NAM Family 1 126 126 129.8 1.1e-37 1 No_clan
Cotton_A_29678_CDS 20 112 11 113 PF00581.20 Rhodanese Domain 12 106 107 42.6 7e-11 1 CL0031
Cotton_A_05998_CDS 34 72 29 74 PF12937.7 F-box-like Domain 8 46 48 35.4 7e-09 1 CL0271
Cotton_A_03058_CDS 37 332 37 332 PF03006.20 HlyIII Family 1 224 224 234.4 1.3e-69 1 CL0192
Cotton_A_05843_CDS 13 60 13 60 PF00249.31 Myb_DNA-binding Domain 1 46 46 53.6 1.8e-14 1 CL0123
Cotton_A_05843_CDS 66 109 66 111 PF00249.31 Myb_DNA-binding Domain 1 44 46 58.4 6e-16 1 CL0123
Cotton_A_18533_CDS 36 96 18 99 PF15511.6 CENP-T_C Domain 19 79 108 34.4 1.8e-08 1 CL0012
Cotton_A_30692_CDS 97 410 97 437 PF03552.14 Cellulose_synt Family 1 296 722 281.5 1.6e-83 1 CL0110
Cotton_A_30692_CDS 437 749 426 751 PF03552.14 Cellulose_synt Family 399 704 722 155.8 1.7e-45 1 CL0110
Cotton_A_19523_CDS 59 219 59 219 PF01554.18 MatE Family 1 161 161 129.4 9.7e-38 1 CL0222
Cotton_A_19523_CDS 280 442 280 443 PF01554.18 MatE Family 1 160 161 117.7 3.8e-34 1 CL0222
Cotton_A_19207_CDS 11 265 11 265 PF00069.25 Pkinase Domain 1 264 264 252.5 4.2e-75 1 CL0016
Cotton_A_19207_CDS 297 355 297 355 PF03822.14 NAF Domain 1 54 54 77.8 5.2e-22 1 CL0573
Cotton_A_24874_CDS 1 101 1 101 PF03936.16 Terpene_synth_C Domain 167 267 267 116.6 1.2e-33 1 CL0613
Cotton_A_02329_CDS 42 137 41 180 PF00561.20 Abhydrolase_1 Domain 2 109 257 42.5 6e-11 1 CL0028
Cotton_A_04026_CDS 100 282 99 282 PF04669.13 Polysacc_synt_4 Family 2 190 190 238.9 3.1e-71 1 No_clan
Cotton_A_31783_CDS 37 441 36 443 PF00860.20 Xan_ur_permease Family 2 387 389 227.8 1.8e-67 1 CL0062
Cotton_A_34467_CDS 37 92 37 92 PF04863.13 EGF_alliinase Domain 1 55 55 97.1 5.6e-28 1 CL0001
Cotton_A_34467_CDS 94 447 94 448 PF04864.13 Alliinase_C Domain 1 362 363 489.6 4.7e-147 1 CL0061
Cotton_A_21334_CDS 13 89 13 89 PF00498.26 FHA Family 1 69 69 48.8 6.8e-13 1 CL0357
Cotton_A_20728_CDS 170 195 170 202 PF05553.11 DUF761 Family 1 26 36 42.5 3.4e-11 1 No_clan
Cotton_A_22305_CDS 3 106 1 106 PF00255.19 GSHPx Family 6 108 108 135.9 3.6e-40 1 CL0172
Cotton_A_12339_CDS 140 598 134 599 PF03055.15 RPE65 Family 7 462 463 358.4 7.5e-107 1 No_clan
Cotton_A_38149_CDS 145 279 144 279 PF16486.5 ArgoN Domain 2 138 138 108.9 3e-31 1 No_clan
Cotton_A_38149_CDS 289 338 289 339 PF08699.10 ArgoL1 Domain 1 51 52 70.2 8.5e-20 1 No_clan
Cotton_A_38149_CDS 357 470 344 472 PF02170.22 PAZ Domain 12 135 137 90.4 8.2e-26 1 CL0638
Cotton_A_38149_CDS 481 527 481 527 PF16488.5 ArgoL2 Family 1 47 47 55.4 5.7e-15 1 No_clan
Cotton_A_38149_CDS 538 616 537 617 PF16487.5 ArgoMid Domain 2 83 84 43.9 2.1e-11 1 No_clan
Cotton_A_38149_CDS 630 949 629 950 PF02171.17 Piwi Family 2 301 302 386.1 1.1e-115 1 CL0219
Cotton_A_21853_CDS 50 499 39 505 PF00067.22 p450 Domain 12 457 463 247.8 1.9e-73 1 No_clan
Cotton_A_25988_CDS 11 414 10 415 PF00501.28 AMP-binding Family 2 422 423 311.1 9.6e-93 1 CL0378
Cotton_A_25988_CDS 423 498 423 498 PF13193.6 AMP-binding_C Domain 1 76 76 69.1 5e-19 1 CL0531
Cotton_A_14787_CDS 200 247 200 249 PF13041.6 PPR_2 Repeat 1 48 50 37.7 1.7e-09 1 CL0020
Cotton_A_14787_CDS 313 335 310 337 PF01535.20 PPR Family 6 28 31 12.3 0.16 1 CL0020
Cotton_A_14787_CDS 378 404 376 404 PF01535.20 PPR Family 5 31 31 18.0 0.0024 1 CL0020
Cotton_A_14787_CDS 409 436 408 438 PF01535.20 PPR Family 2 29 31 10.9 0.44 1 CL0020
Cotton_A_14787_CDS 444 470 443 471 PF01535.20 PPR Family 2 28 31 10.3 0.69 1 CL0020
Cotton_A_14787_CDS 508 534 506 536 PF12854.7 PPR_1 Repeat 3 29 34 24.2 1.9e-05 1 CL0020
Cotton_A_14787_CDS 654 683 653 683 PF01535.20 PPR Family 2 31 31 18.5 0.0017 1 CL0020
Cotton_A_37231_CDS 86 374 86 375 PF07887.11 Calmodulin_bind Family 1 291 292 421.6 1.5e-126 1 No_clan
Cotton_A_06101_CDS 317 689 317 690 PF07990.12 NABP Domain 1 387 388 425.1 3.7e-127 1 No_clan
Cotton_A_06101_CDS 692 725 691 725 PF00806.19 PUF Repeat 2 35 35 32.3 4.7e-08 1 CL0020
Cotton_A_06101_CDS 727 757 727 759 PF00806.19 PUF Repeat 1 31 35 30.4 1.8e-07 1 CL0020
Cotton_A_06101_CDS 764 795 763 797 PF00806.19 PUF Repeat 2 32 35 23.7 2.5e-05 1 CL0020
Cotton_A_06101_CDS 800 832 799 833 PF00806.19 PUF Repeat 2 34 35 25.0 9.5e-06 1 CL0020
Cotton_A_06101_CDS 837 869 835 869 PF00806.19 PUF Repeat 3 35 35 29.8 3e-07 1 CL0020
Cotton_A_06101_CDS 876 905 872 906 PF00806.19 PUF Repeat 5 34 35 31.9 6.1e-08 1 CL0020
Cotton_A_06101_CDS 909 941 908 941 PF00806.19 PUF Repeat 2 35 35 23.6 2.7e-05 1 CL0020
Cotton_A_06101_CDS 958 984 955 984 PF00806.19 PUF Repeat 9 35 35 29.2 4.6e-07 1 CL0020
Cotton_A_32231_CDS 49 104 49 105 PF01849.18 NAC Family 1 56 57 81.8 2.5e-23 1 No_clan
Cotton_A_01226_CDS 99 147 97 149 PF13812.6 PPR_3 Repeat 14 61 63 23.5 4.3e-05 1 CL0020
Cotton_A_01226_CDS 202 248 201 250 PF13041.6 PPR_2 Repeat 2 48 50 36.4 4.5e-09 1 CL0020
Cotton_A_01226_CDS 303 350 302 351 PF13041.6 PPR_2 Repeat 2 49 50 30.7 2.6e-07 1 CL0020
Cotton_A_01226_CDS 377 401 371 402 PF12854.7 PPR_1 Repeat 9 33 34 24.8 1.2e-05 1 CL0020
Cotton_A_01226_CDS 476 600 476 600 PF14432.6 DYW_deaminase Family 1 127 127 133.2 4.5e-39 1 CL0109
Cotton_A_15964_CDS 2 115 2 116 PF12624.7 Chorein_N Family 1 115 116 104.7 3.1e-30 1 No_clan
Cotton_A_15964_CDS 139 366 135 367 PF16908.5 VPS13 Family 5 235 236 128.6 3.1e-37 1 No_clan
Cotton_A_15964_CDS 585 801 582 804 PF16910.5 VPS13_mid_rpt Repeat 9 230 235 85.5 3.5e-24 1 No_clan
Cotton_A_08149_CDS 105 301 87 312 PF03552.14 Cellulose_synt Family 97 291 722 172.2 1.9e-50 1 CL0110
Cotton_A_08149_CDS 318 637 309 651 PF03552.14 Cellulose_synt Family 383 700 722 174.2 4.6e-51 1 CL0110
Cotton_A_09226_CDS 53 300 52 303 PF00060.26 Lig_chan Family 2 146 149 58.4 6.8e-16 1 CL0030
Cotton_A_04105_CDS 56 177 55 177 PF08311.12 Mad3_BUB1_I Domain 2 124 124 136.6 4.1e-40 1 No_clan
Cotton_A_01374_CDS 142 194 141 194 PF14416.6 PMR5N Domain 2 53 53 72.5 2.6e-20 1 No_clan
Cotton_A_01374_CDS 195 525 195 526 PF13839.6 PC-Esterase Family 1 282 283 253.9 2.4e-75 1 CL0264
Cotton_A_25076_CDS 261 424 261 424 PF13359.6 DDE_Tnp_4 Domain 1 158 158 80.9 7.8e-23 1 CL0219
Cotton_A_26594_CDS 20 69 19 70 PF04588.13 HIG_1_N Family 2 51 52 62.5 3.1e-17 1 No_clan
Cotton_A_40406_CDS 1 111 1 115 PF08284.11 RVP_2 Domain 21 131 136 86.4 1.4e-24 1 CL0129
Cotton_A_40406_CDS 113 267 106 268 PF00078.27 RVT_1 Family 7 221 222 84.8 6e-24 1 CL0027
Cotton_A_40406_CDS 316 404 312 406 PF17919.1 RT_RNaseH_2 Domain 5 98 100 92.1 1.7e-26 1 CL0219
Cotton_A_40406_CDS 454 505 452 505 PF17921.1 Integrase_H2C2 Domain 3 52 58 52.6 3.6e-14 1 CL0361
Cotton_A_04440_CDS 84 315 83 315 PF03328.14 HpcH_HpaI Family 2 221 221 180.9 1.8e-53 1 CL0151
Cotton_A_33650_CDS 69 326 68 326 PF00069.25 Pkinase Domain 2 264 264 250.9 1.3e-74 1 CL0016
Cotton_A_33650_CDS 387 432 387 436 PF13833.6 EF-hand_8 Domain 3 50 55 36.8 2.5e-09 1 CL0220
Cotton_A_33650_CDS 443 506 443 506 PF13499.6 EF-hand_7 Domain 1 71 71 54.6 1.1e-14 1 CL0220
Cotton_A_33650_CDS 555 997 536 997 PF02705.16 K_trans Family 78 534 534 423.3 1.3e-126 1 CL0062
Cotton_A_13640_CDS 24 116 19 119 PF03171.20 2OG-FeII_Oxy Domain 5 98 101 57.7 1.3e-15 1 CL0029
Cotton_A_09214_CDS 4 157 2 158 PF12850.7 Metallophos_2 Domain 3 163 165 73.2 2.8e-20 1 CL0163
Cotton_A_00326_CDS 45 162 44 165 PF00638.18 Ran_BP1 Family 2 119 122 144.3 2.1e-42 1 CL0266
Cotton_A_26747_CDS 186 243 186 243 PF03106.15 WRKY Domain 1 59 59 95.2 2e-27 1 CL0274
Cotton_A_33016_CDS 82 462 82 464 PF00916.20 Sulfate_transp Family 1 378 380 435.3 1.6e-130 1 CL0062
Cotton_A_33016_CDS 515 633 515 633 PF01740.21 STAS Domain 1 117 117 111.2 2.1e-32 1 CL0502
Cotton_A_37557_CDS 13 61 13 64 PF04927.12 SMP Family 1 52 59 33.0 6.2e-08 1 No_clan
Cotton_A_37557_CDS 127 185 127 185 PF04927.12 SMP Family 1 59 59 81.0 6.6e-23 1 No_clan
Cotton_A_37557_CDS 192 250 192 251 PF04927.12 SMP Family 1 58 59 66.2 2.7e-18 1 No_clan
Cotton_A_15734_CDS 1 158 1 163 PF08704.10 GCD14 Family 34 192 247 196.0 8.2e-58 1 CL0063
Cotton_A_27327_CDS 25 48 23 57 PF02861.20 Clp_N Family 3 26 53 13.0 0.088 1 No_clan
Cotton_A_19570_CDS 12 105 4 105 PF00125.24 Histone Domain 38 131 131 77.6 1.1e-21 1 CL0012
Cotton_A_19570_CDS 106 135 106 136 PF16211.5 Histone_H2A_C Family 1 31 35 42.5 3.9e-11 1 No_clan
Cotton_A_13284_CDS 38 78 37 82 PF00646.33 F-box Domain 2 42 48 31.4 1.2e-07 1 CL0271
Cotton_A_13284_CDS 171 212 171 213 PF01344.25 Kelch_1 Repeat 1 43 46 39.9 2.3e-10 1 CL0186
Cotton_A_07751_CDS 38 485 34 497 PF00067.22 p450 Domain 7 448 463 248.0 1.7e-73 1 No_clan
Cotton_A_00800_CDS 95 223 95 228 PF00656.22 Peptidase_C14 Domain 1 114 248 104.5 8.4e-30 1 CL0093
Cotton_A_00800_CDS 226 334 221 338 PF00656.22 Peptidase_C14 Domain 153 243 248 29.9 5e-07 1 CL0093
Cotton_A_19028_CDS 27 272 27 272 PF06813.13 Nodulin-like Family 1 250 250 310.6 7.4e-93 1 CL0015
Cotton_A_29389_CDS 32 124 17 124 PF14368.6 LTP_2 Family 8 97 97 49.9 2.5e-13 1 CL0482
Cotton_A_34928_CDS 31 247 31 247 PF00314.17 Thaumatin Domain 1 214 214 273.6 1.1e-81 1 CL0293
Cotton_A_26940_CDS 22 72 21 72 PF00249.31 Myb_DNA-binding Domain 2 46 46 26.8 4.4e-06 1 CL0123
Cotton_A_22078_CDS 6 296 5 298 PF01095.19 Pectinesterase Family 2 296 298 247.9 8.8e-74 1 CL0268
Cotton_A_40178_CDS 51 294 50 295 PF12146.8 Hydrolase_4 Family 2 238 239 171.4 1.9e-50 1 CL0028
Cotton_A_19870_CDS 81 108 81 111 PF14383.6 VARLMGL Domain 1 28 32 54.0 8.2e-15 1 No_clan
Cotton_A_19870_CDS 768 918 768 918 PF14309.6 DUF4378 Family 1 165 165 111.5 5.4e-32 1 No_clan
Cotton_A_40546_CDS 55 332 55 333 PF04674.12 Phi_1 Family 1 275 276 336.5 1.1e-100 1 No_clan
Cotton_A_36975_CDS 4 85 2 86 PF00276.20 Ribosomal_L23 Family 3 84 86 68.0 6.8e-19 1 No_clan
Cotton_A_12996_CDS 34 53 33 54 PF18044.1 zf-CCCH_4 Domain 2 21 22 26.9 3e-06 1 CL0537
Cotton_A_12996_CDS 208 265 208 267 PF00097.25 zf-C3HC4 Domain 1 41 41 29.4 5.2e-07 1 CL0229
Cotton_A_32363_CDS 16 106 10 107 PF02519.14 Auxin_inducible Family 2 89 90 99.9 6.7e-29 1 No_clan
Cotton_A_30961_CDS 70 315 43 320 PF00481.21 PP2C Family 38 251 258 147.1 7.1e-43 1 CL0238
Cotton_A_32727_CDS 89 165 77 165 PF02225.22 PA Family 17 89 89 35.4 8e-09 1 CL0364
Cotton_A_32727_CDS 242 519 238 521 PF04258.13 Peptidase_A22B Family 6 282 284 285.8 4e-85 1 CL0130
Cotton_A_03473_CDS 13 97 12 97 PF14560.6 Ubiquitin_2 Domain 2 87 87 89.1 1.9e-25 1 CL0072
Cotton_A_35331_CDS 61 192 59 192 PF02469.22 Fasciclin Domain 3 128 128 77.4 1.1e-21 1 No_clan
Cotton_A_37422_CDS 45 204 45 205 PF01554.18 MatE Family 1 160 161 111.3 3.4e-32 1 CL0222
Cotton_A_37422_CDS 265 427 264 427 PF01554.18 MatE Family 2 161 161 91.7 3.8e-26 1 CL0222
Cotton_A_01813_CDS 65 190 65 190 PF02365.15 NAM Family 1 126 126 117.2 8.4e-34 1 No_clan
Cotton_A_17641_CDS 38 144 37 144 PF01453.24 B_lectin Domain 2 105 105 112.1 1.7e-32 1 No_clan
Cotton_A_17641_CDS 176 291 176 291 PF00954.20 S_locus_glycop Domain 1 111 111 100.7 6.5e-29 1 No_clan
Cotton_A_17641_CDS 320 379 312 379 PF08276.11 PAN_2 Domain 4 67 67 58.5 5.4e-16 1 CL0168
Cotton_A_29780_CDS 22 543 22 545 PF01676.18 Metalloenzyme Family 1 246 248 368.8 1.2e-110 1 CL0088
Cotton_A_29780_CDS 104 322 103 323 PF06415.13 iPGM_N Domain 2 214 215 203.4 2.8e-60 1 No_clan
Cotton_A_12387_CDS 1 103 1 103 PF07714.17 Pkinase_Tyr Domain 172 259 259 28.5 8.4e-07 1 CL0016
Cotton_A_26267_CDS 82 474 82 475 PF05834.12 Lycopene_cycl Family 1 379 380 468.9 1.2e-140 1 CL0063
Cotton_A_32033_CDS 120 169 119 170 PF00847.20 AP2 Domain 2 53 54 52.1 5.7e-14 1 CL0081
Cotton_A_17777_CDS 22 88 22 88 PF04716.14 ETC_C1_NDUFA5 Family 1 67 67 90.4 4.5e-26 1 No_clan
Cotton_A_02957_CDS 331 419 319 424 PF12452.8 DUF3685 Family 39 123 192 29.5 5.5e-07 1 No_clan
Cotton_A_02957_CDS 428 519 417 521 PF12452.8 DUF3685 Family 98 189 192 47.3 1.9e-12 1 No_clan
Cotton_A_11601_CDS 39 120 38 120 PF02298.17 Cu_bind_like Domain 2 84 84 83.8 6.2e-24 1 CL0026
Cotton_A_11524_CDS 44 105 44 111 PF16209.5 PhoLip_ATPase_N Family 1 61 67 77.4 4.9e-22 1 No_clan
Cotton_A_11524_CDS 140 331 138 387 PF00122.20 E1-E2_ATPase Family 3 142 181 35.7 5.8e-09 1 No_clan
Cotton_A_11524_CDS 517 621 516 623 PF13246.6 Cation_ATPase Family 2 89 91 35.4 8.3e-09 1 CL0137
Cotton_A_11524_CDS 881 1131 881 1132 PF16212.5 PhoLip_ATPase_C Family 1 248 249 281.6 6.3e-84 1 No_clan
Cotton_A_13118_CDS 193 307 193 309 PF03479.15 DUF296 Domain 1 105 107 97.0 7.7e-28 1 CL0615
Cotton_A_26240_CDS 77 330 77 332 PF01501.20 Glyco_transf_8 Family 1 254 256 185.3 1.5e-54 1 CL0110
Cotton_A_13256_CDS 107 156 105 156 PF00847.20 AP2 Domain 3 54 54 47.9 1.2e-12 1 CL0081
Cotton_A_31169_CDS 27 80 26 83 PF00013.29 KH_1 Domain 2 57 66 24.9 1.3e-05 1 CL0007
Cotton_A_31169_CDS 136 192 130 194 PF00013.29 KH_1 Domain 8 63 66 42.9 3.1e-11 1 CL0007
Cotton_A_31169_CDS 274 323 273 329 PF00013.29 KH_1 Domain 2 52 66 36.2 3.9e-09 1 CL0007
Cotton_A_31169_CDS 365 430 365 432 PF00013.29 KH_1 Domain 1 64 66 28.9 7.6e-07 1 CL0007
Cotton_A_07284_CDS 364 471 340 471 PF00917.26 MATH Domain 17 113 113 24.3 2.7e-05 1 CL0389
Cotton_A_32420_CDS 9 144 9 147 PF00179.26 UQ_con Domain 1 136 140 133.3 4.6e-39 1 CL0208
Cotton_A_27339_CDS 38 423 34 425 PF01490.18 Aa_trans Family 6 407 409 239.5 5.1e-71 1 CL0062
Cotton_A_11615_CDS 22 87 22 87 PF05641.12 Agenet Domain 1 61 61 34.4 2.2e-08 1 CL0049
Cotton_A_11615_CDS 213 274 213 274 PF05641.12 Agenet Domain 1 61 61 43.6 3e-11 1 CL0049
Cotton_A_11615_CDS 350 415 350 415 PF05641.12 Agenet Domain 1 61 61 33.5 4.4e-08 1 CL0049
Cotton_A_20042_CDS 212 254 211 254 PF13639.6 zf-RING_2 Domain 2 44 44 49.3 4.5e-13 1 CL0229
Cotton_A_23836_CDS 14 103 8 115 PF00291.25 PALP Family 35 124 294 90.9 9.2e-26 1 CL0063
Cotton_A_09438_CDS 91 257 90 258 PF12046.8 CCB1 Family 2 167 168 190.9 1e-56 1 No_clan
Cotton_A_28268_CDS 7 223 7 238 PF00083.24 Sugar_tr Family 1 229 452 180.6 5e-53 1 CL0015
Cotton_A_28268_CDS 502 727 483 727 PF00083.24 Sugar_tr Family 237 452 452 140.8 5.9e-41 1 CL0015
Cotton_A_13561_CDS 85 215 85 216 PF00005.27 ABC_tran Domain 1 117 137 56.0 5.8e-15 1 CL0023
Cotton_A_40458_CDS 277 492 273 498 PF00928.21 Adap_comp_sub Family 7 226 264 105.6 2.8e-30 1 CL0448
Cotton_A_38574_CDS 15 92 13 100 PF13650.6 Asp_protease_2 Domain 3 79 90 25.2 1.9e-05 1 CL0129
Cotton_A_36260_CDS 13 411 12 412 PF00464.19 SHMT Domain 2 398 399 621.0 6.4e-187 1 CL0061
Cotton_A_09991_CDS 4 94 4 124 PF00168.30 C2 Domain 1 95 103 70.1 1.6e-19 1 CL0154
Cotton_A_11531_CDS 21 51 21 51 PF00397.26 WW Domain 1 31 31 26.8 4e-06 1 CL0680
Cotton_A_11973_CDS 42 97 41 97 PF00046.29 Homeodomain Domain 2 57 57 58.5 4.4e-16 1 CL0123
Cotton_A_31005_CDS 71 124 71 129 PF00403.26 HMA Domain 1 58 62 57.4 1.5e-15 1 No_clan
Cotton_A_13225_CDS 17 121 11 123 PF00651.31 BTB Domain 10 108 111 26.4 6.4e-06 1 CL0033
Cotton_A_06372_CDS 23 292 23 292 PF01193.24 RNA_pol_L Domain 1 69 69 73.3 7.6e-21 1 CL0509
Cotton_A_06372_CDS 53 180 53 180 PF01000.26 RNA_pol_A_bac Domain 1 112 112 112.0 1.8e-32 1 No_clan
Cotton_A_03020_CDS 39 165 34 168 PF00790.19 VHS Domain 8 138 141 82.8 2e-23 1 CL0009
Cotton_A_03020_CDS 230 304 230 304 PF03127.14 GAT Domain 2 77 77 54.7 9.2e-15 1 No_clan
Cotton_A_14511_CDS 18 366 18 367 PF03759.13 PRONE Family 1 362 363 554.4 9.1e-167 1 No_clan
Cotton_A_39868_CDS 76 119 74 123 PF01031.20 Dynamin_M Family 26 69 285 43.0 3.2e-11 1 No_clan
Cotton_A_16009_CDS 115 134 115 144 PF00786.28 PBD Domain 1 20 59 21.6 0.00021 1 No_clan
Cotton_A_19049_CDS 72 161 71 167 PF01453.24 B_lectin Domain 2 93 105 57.1 2.1e-15 1 No_clan
Cotton_A_19049_CDS 523 721 521 757 PF00069.25 Pkinase Domain 4 198 264 159.6 9.4e-47 1 CL0016
Cotton_A_10199_CDS 16 277 16 277 PF00069.25 Pkinase Domain 1 264 264 200.7 2.7e-59 1 CL0016
Cotton_A_36173_CDS 47 128 47 133 PF18036.1 Ubiquitin_4 Domain 1 84 89 78.8 2.4e-22 1 CL0072
Cotton_A_36405_CDS 309 369 308 369 PF00226.31 DnaJ Domain 2 63 63 58.7 4.6e-16 1 CL0392
Cotton_A_36405_CDS 417 576 417 576 PF12572.8 DUF3752 Family 1 152 152 99.0 3.5e-28 1 No_clan
Cotton_A_11886_CDS 41 176 35 178 PF10604.9 Polyketide_cyc2 Family 7 138 143 61.2 1.3e-16 1 CL0209
Cotton_A_13291_CDS 114 375 114 375 PF00069.25 Pkinase Domain 1 264 264 193.1 5.8e-57 1 CL0016
Cotton_A_10263_CDS 186 421 186 421 PF07891.12 DUF1666 Family 1 246 246 290.3 1.3e-86 1 No_clan
Cotton_A_06569_CDS 168 538 168 538 PF03514.14 GRAS Family 1 374 374 452.8 8.6e-136 1 CL0063
Cotton_A_13590_CDS 130 154 128 155 PF01535.20 PPR Family 6 30 31 13.6 0.061 1 CL0020
Cotton_A_13590_CDS 159 202 155 204 PF13041.6 PPR_2 Repeat 5 48 50 37.2 2.4e-09 1 CL0020
Cotton_A_13590_CDS 230 252 228 257 PF01535.20 PPR Family 3 25 31 11.9 0.21 1 CL0020
Cotton_A_13590_CDS 256 305 256 305 PF13041.6 PPR_2 Repeat 1 50 50 44.4 1.4e-11 1 CL0020
Cotton_A_13590_CDS 355 399 354 400 PF13041.6 PPR_2 Repeat 2 49 50 33.1 4.7e-08 1 CL0020
Cotton_A_13590_CDS 427 447 425 449 PF01535.20 PPR Family 3 23 31 12.4 0.14 1 CL0020
Cotton_A_13590_CDS 497 522 494 522 PF01535.20 PPR Family 6 31 31 13.6 0.061 1 CL0020
Cotton_A_04575_CDS 169 218 169 218 PF13041.6 PPR_2 Repeat 1 50 50 35.2 1e-08 1 CL0020
Cotton_A_02123_CDS 19 93 19 105 PF00300.22 His_Phos_1 Domain 1 64 194 33.4 3.4e-08 1 CL0071
Cotton_A_02123_CDS 152 223 130 241 PF00300.22 His_Phos_1 Domain 110 176 194 24.3 2.1e-05 1 CL0071
Cotton_A_35314_CDS 166 284 165 284 PF00004.29 AAA Domain 2 132 132 48.1 1.5e-12 1 CL0023
Cotton_A_11126_CDS 96 229 95 229 PF16486.5 ArgoN Domain 2 138 138 90.4 1.5e-25 1 No_clan
Cotton_A_11126_CDS 239 288 239 289 PF08699.10 ArgoL1 Domain 1 51 52 67.0 8.1e-19 1 No_clan
Cotton_A_11126_CDS 295 421 294 422 PF02170.22 PAZ Domain 2 136 137 89.6 1.5e-25 1 CL0638
Cotton_A_11126_CDS 435 477 431 477 PF16488.5 ArgoL2 Family 5 47 47 50.5 1.9e-13 1 No_clan
Cotton_A_11126_CDS 488 565 487 567 PF16487.5 ArgoMid Domain 2 82 84 49.1 5e-13 1 No_clan
Cotton_A_11126_CDS 580 899 579 900 PF02171.17 Piwi Family 2 301 302 380.6 5.2e-114 1 CL0219
Cotton_A_28734_CDS 209 492 208 492 PF03000.14 NPH3 Family 2 258 258 318.0 5e-95 1 No_clan
Cotton_A_12985_CDS 1 75 1 76 PF14569.6 zf-UDP Domain 3 77 78 131.6 8e-39 1 CL0229
Cotton_A_12985_CDS 330 1051 330 1054 PF03552.14 Cellulose_synt Family 1 719 722 1388.2 0 1 CL0110
Cotton_A_24106_CDS 29 372 29 382 PF07287.11 AtuA Family 1 341 351 315.7 3e-94 1 No_clan
Cotton_A_17846_CDS 141 219 140 219 PF14380.6 WAK_assoc Domain 2 89 104 38.5 1.5e-09 1 No_clan
Cotton_A_29100_CDS 50 142 50 143 PF07777.11 MFMR Family 1 96 97 103.3 7.5e-30 1 No_clan
Cotton_A_29100_CDS 294 356 294 357 PF00170.21 bZIP_1 Family 1 63 64 76.1 1.7e-21 1 CL0018
Cotton_A_09383_CDS 6 127 4 129 PF00410.19 Ribosomal_S8 Domain 3 125 127 77.6 7.6e-22 1 No_clan
Cotton_A_10276_CDS 43 105 42 120 PF00293.28 NUDIX Domain 2 59 131 43.1 3.8e-11 1 CL0261
Cotton_A_25287_CDS 73 171 73 172 PF00630.19 Filamin Domain 1 102 103 74.2 1.3e-20 1 CL0159
Cotton_A_25287_CDS 342 402 340 403 PF00076.22 RRM_1 Domain 3 69 70 48.6 5.4e-13 1 CL0221
Cotton_A_12475_CDS 29 283 29 283 PF00069.25 Pkinase Domain 1 264 264 242.7 4.1e-72 1 CL0016
Cotton_A_12475_CDS 307 356 306 366 PF03822.14 NAF Domain 2 45 54 57.8 9.1e-16 1 CL0573
Cotton_A_06012_CDS 54 240 53 241 PF00270.29 DEAD Domain 2 175 176 143.3 6.3e-42 1 CL0023
Cotton_A_06012_CDS 317 440 312 440 PF00271.31 Helicase_C Family 4 111 111 88.5 3.5e-25 1 CL0023
Cotton_A_06012_CDS 504 564 503 565 PF13959.6 DUF4217 Domain 2 60 61 62.8 2.5e-17 1 No_clan
Cotton_A_13497_CDS 13 53 4 54 PF05922.16 Inhibitor_I9 Domain 41 81 82 38.3 1.6e-09 1 CL0570
Cotton_A_13497_CDS 75 525 74 525 PF00082.22 Peptidase_S8 Domain 2 298 298 160.1 7.1e-47 1 No_clan
Cotton_A_13497_CDS 580 675 580 676 PF17766.1 fn3_6 Domain 1 98 99 92.9 1.1e-26 1 CL0159
Cotton_A_34221_CDS 213 370 213 370 PF00903.25 Glyoxalase Domain 1 128 128 27.3 3.4e-06 1 CL0104
Cotton_A_09955_CDS 76 162 76 162 PF03330.18 DPBB_1 Domain 1 83 83 77.6 6.7e-22 1 CL0199
Cotton_A_09955_CDS 174 251 173 251 PF01357.21 Pollen_allerg_1 Domain 2 80 80 79.6 1.3e-22 1 CL0159
Cotton_A_06109_CDS 3 182 2 183 PF01121.20 CoaE Domain 2 178 179 199.8 2.7e-59 1 CL0023
Cotton_A_04955_CDS 79 337 79 337 PF00069.25 Pkinase Domain 1 264 264 247.8 1.1e-73 1 CL0016
Cotton_A_04955_CDS 385 445 355 446 PF13499.6 EF-hand_7 Domain 4 70 71 44.6 1.5e-11 1 CL0220
Cotton_A_04955_CDS 454 517 454 517 PF13499.6 EF-hand_7 Domain 1 71 71 53.3 2.9e-14 1 CL0220
Cotton_A_06334_CDS 206 262 206 262 PF06830.11 Root_cap Family 1 57 57 95.6 1.4e-27 1 No_clan
Cotton_A_19554_CDS 106 132 106 134 PF08799.11 PRP4 Domain 1 27 29 45.6 3.7e-12 1 No_clan
Cotton_A_19554_CDS 229 370 228 370 PF02840.15 Prp18 Family 2 143 143 206.9 1.3e-61 1 No_clan
Cotton_A_34140_CDS 11 169 11 171 PF00071.22 Ras Domain 1 159 162 193.3 2.1e-57 1 CL0023
Cotton_A_16094_CDS 187 230 187 230 PF13639.6 zf-RING_2 Domain 1 44 44 53.1 3e-14 1 CL0229
Cotton_A_06430_CDS 41 224 40 227 PF00155.21 Aminotran_1_2 Domain 2 201 363 117.6 6.9e-34 1 CL0061
Cotton_A_06430_CDS 225 338 224 338 PF00155.21 Aminotran_1_2 Domain 259 363 363 82.6 3.1e-23 1 CL0061
Cotton_A_09093_CDS 18 151 17 154 PF05903.14 Peptidase_C97 Domain 2 148 151 164.9 1.1e-48 1 CL0125
Cotton_A_02355_CDS 28 344 28 346 PF00332.18 Glyco_hydro_17 Domain 1 311 313 290.9 1.5e-86 1 CL0058
Cotton_A_06996_CDS 172 338 172 338 PF13359.6 DDE_Tnp_4 Domain 1 158 158 106.6 9.8e-31 1 CL0219
Cotton_A_02801_CDS 35 90 34 113 PF03853.15 YjeF_N Domain 2 58 171 48.4 9.5e-13 1 CL0063
Cotton_A_02801_CDS 116 168 106 216 PF01243.20 Putative_PNPOx Domain 15 67 88 40.2 2.8e-10 1 CL0336
Cotton_A_26702_CDS 29 222 17 222 PF06045.11 Rhamnogal_lyase Family 17 213 213 235.0 6.1e-70 1 CL0103
Cotton_A_20035_CDS 19 209 18 212 PF00106.25 adh_short Domain 2 191 195 156.4 5.7e-46 1 CL0063
Cotton_A_24839_CDS 14 75 14 76 PF00076.22 RRM_1 Domain 1 69 70 55.6 3.4e-15 1 CL0221
Cotton_A_24839_CDS 104 119 103 120 PF00098.23 zf-CCHC Domain 2 17 18 27.6 2.1e-06 1 CL0511
Cotton_A_24839_CDS 125 141 125 142 PF00098.23 zf-CCHC Domain 1 17 18 20.1 0.00047 1 CL0511
Cotton_A_01731_CDS 1 236 1 239 PF02121.18 IP_trans Family 10 244 247 322.4 2e-96 1 CL0209
Cotton_A_32547_CDS 18 156 14 158 PF03208.19 PRA1 Family 5 141 143 145.7 7e-43 1 No_clan
Cotton_A_28298_CDS 25 253 22 254 PF02230.16 Abhydrolase_2 Domain 5 195 217 99.4 2.5e-28 1 CL0028
Cotton_A_04637_CDS 50 308 48 310 PF00459.25 Inositol_P Family 3 267 272 248.1 1.1e-73 1 CL0171
Cotton_A_14810_CDS 360 571 359 571 PF02919.15 Topoisom_I_N Family 2 213 213 318.7 1.5e-95 1 No_clan
Cotton_A_14810_CDS 574 635 574 638 PF01028.20 Topoisom_I Domain 1 62 232 75.1 4.7e-21 1 CL0382
Cotton_A_35005_CDS 283 321 282 321 PF00400.32 WD40 Repeat 2 38 38 27.5 3.9e-06 1 CL0186
Cotton_A_35005_CDS 326 364 326 364 PF00400.32 WD40 Repeat 1 38 38 28.0 2.8e-06 1 CL0186
Cotton_A_35005_CDS 412 449 412 450 PF00400.32 WD40 Repeat 1 37 38 20.0 0.00092 1 CL0186
Cotton_A_35005_CDS 505 540 500 540 PF00400.32 WD40 Repeat 6 38 38 15.2 0.029 1 CL0186
Cotton_A_09445_CDS 2 41 1 42 PF18511.1 F-box_5 Domain 2 41 42 76.3 9.7e-22 1 CL0271
Cotton_A_09445_CDS 61 107 61 107 PF18791.1 Transp_inhibit Family 1 47 47 82.7 8.9e-24 1 No_clan
Cotton_A_18834_CDS 14 71 13 71 PF00226.31 DnaJ Domain 2 63 63 78.9 2.3e-22 1 CL0392
Cotton_A_18834_CDS 121 342 120 342 PF01556.18 DnaJ_C Domain 2 148 148 135.4 1.6e-39 1 No_clan
Cotton_A_18834_CDS 147 213 147 213 PF00684.19 DnaJ_CXXCXGXG Domain 1 67 67 56.7 2.3e-15 1 No_clan
Cotton_A_10543_CDS 21 143 21 144 PF00241.20 Cofilin_ADF Domain 1 120 121 128.3 1.3e-37 1 CL0092
Cotton_A_34173_CDS 463 620 462 621 PF13177.6 DNA_pol3_delta2 Domain 2 162 163 80.7 9.7e-23 1 CL0023
Cotton_A_34173_CDS 678 792 673 803 PF12169.8 DNA_pol3_gamma3 Family 6 125 143 25.0 1.4e-05 1 CL0604
Cotton_A_39909_CDS 34 71 33 71 PF08263.12 LRRNT_2 Family 2 41 41 44.3 1.6e-11 1 No_clan
Cotton_A_39909_CDS 444 504 444 505 PF13855.6 LRR_8 Repeat 1 60 61 35.9 4.6e-09 1 CL0022
Cotton_A_39909_CDS 636 656 636 658 PF00560.33 LRR_1 Repeat 1 21 23 10.6 0.76 1 CL0022
Cotton_A_39909_CDS 660 719 660 719 PF13855.6 LRR_8 Repeat 2 61 61 40.4 1.8e-10 1 CL0022
Cotton_A_39909_CDS 848 906 846 906 PF13855.6 LRR_8 Repeat 3 61 61 37.4 1.6e-09 1 CL0022
Cotton_A_25421_CDS 13 116 8 120 PF01150.17 GDA1_CD39 Family 141 253 423 72.0 3.6e-20 1 CL0108
Cotton_A_10999_CDS 28 201 28 201 PF01397.21 Terpene_synth Domain 1 192 192 181.0 1.9e-53 1 No_clan
Cotton_A_10999_CDS 199 453 195 453 PF03936.16 Terpene_synth_C Domain 12 267 267 329.8 1.1e-98 1 CL0613
Cotton_A_21780_CDS 61 527 58 527 PF00171.22 Aldedh Family 5 462 462 422.5 1.6e-126 1 CL0099
Cotton_A_31506_CDS 181 308 181 308 PF10539.9 Dev_Cell_Death Domain 1 127 127 139.7 4.5e-41 1 No_clan
Cotton_A_17313_CDS 194 260 194 261 PF00013.29 KH_1 Domain 1 65 66 52.0 4.5e-14 1 CL0007
Cotton_A_17313_CDS 292 358 291 359 PF00013.29 KH_1 Domain 2 65 66 56.6 1.7e-15 1 CL0007
Cotton_A_11833_CDS 109 158 108 159 PF13964.6 Kelch_6 Repeat 2 50 50 29.6 5.7e-07 1 CL0186
Cotton_A_11833_CDS 167 205 158 205 PF01344.25 Kelch_1 Repeat 9 46 46 35.4 5.8e-09 1 CL0186
Cotton_A_26740_CDS 35 112 35 114 PF07019.12 Rab5ip Family 1 80 82 63.6 1.9e-17 1 No_clan
Cotton_A_32843_CDS 46 120 45 120 PF01066.21 CDP-OH_P_transf Family 2 66 66 64.4 1.2e-17 1 No_clan
Cotton_A_03980_CDS 29 339 29 340 PF00657.22 Lipase_GDSL Family 1 198 200 84.2 1.2e-23 1 CL0264
Cotton_A_10978_CDS 141 459 141 459 PF00225.23 Kinesin Domain 1 333 333 367.1 6.6e-110 1 CL0023
Cotton_A_26358_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 45.5 6.5e-12 1 CL0123
Cotton_A_26358_CDS 67 112 67 112 PF00249.31 Myb_DNA-binding Domain 1 46 46 51.3 9.9e-14 1 CL0123
Cotton_A_11939_CDS 20 133 18 134 PF06058.13 DCP1 Family 3 116 117 140.6 2.1e-41 1 CL0266
Cotton_A_18999_CDS 8 99 8 116 PF18052.1 Rx_N Domain 1 87 93 77.8 5.7e-22 1 No_clan
Cotton_A_18999_CDS 174 320 172 329 PF00931.22 NB-ARC Domain 3 149 252 123.9 6e-36 1 CL0023
Cotton_A_18934_CDS 55 137 55 137 PF14547.6 Hydrophob_seed Domain 1 84 85 91.0 4.2e-26 1 CL0482
Cotton_A_18096_CDS 1 130 1 131 PF00235.19 Profilin Domain 1 126 127 152.8 5.1e-45 1 CL0431
Cotton_A_02337_CDS 38 645 38 645 PF00012.20 HSP70 Family 1 599 599 877.8 3.1e-264 1 CL0108
Cotton_A_28332_CDS 8 226 7 228 PF05817.14 Ribophorin_II Family 2 187 631 103.1 1.4e-29 1 No_clan
Cotton_A_28332_CDS 284 751 279 752 PF05817.14 Ribophorin_II Family 179 630 631 519.3 1.5e-155 1 No_clan
Cotton_A_07551_CDS 53 310 53 311 PF00685.27 Sulfotransfer_1 Domain 1 266 267 204.2 2.5e-60 1 CL0023
Cotton_A_29143_CDS 82 179 78 184 PF00931.22 NB-ARC Domain 5 104 252 44.4 1.1e-11 1 CL0023
Cotton_A_01405_CDS 74 109 73 123 PF00847.20 AP2 Domain 4 41 54 28.9 1e-06 1 CL0081
Cotton_A_05981_CDS 96 181 96 181 PF00203.21 Ribosomal_S19 Domain 1 81 81 114.7 1.3e-33 1 No_clan
Cotton_A_24811_CDS 14 109 13 109 PF00254.28 FKBP_C Domain 2 94 94 84.2 5.9e-24 1 CL0487
Cotton_A_07345_CDS 34 131 34 131 PF05938.11 Self-incomp_S1 Family 1 104 104 36.0 7.7e-09 1 No_clan
Cotton_A_31341_CDS 89 507 79 509 PF00067.22 p450 Domain 31 461 463 274.5 1.5e-81 1 No_clan
Cotton_A_01768_CDS 6 150 4 257 PF00483.23 NTP_transferase Family 3 150 248 54.6 1.1e-14 1 CL0110
Cotton_A_01768_CDS 380 413 379 416 PF00132.24 Hexapep Repeat 2 30 36 23.6 2.9e-05 1 CL0536
Cotton_A_17049_CDS 33 145 32 153 PF00069.25 Pkinase Domain 2 110 264 66.3 2.6e-18 1 CL0016
Cotton_A_17049_CDS 208 395 180 395 PF00069.25 Pkinase Domain 97 264 264 153.7 5.6e-45 1 CL0016
Cotton_A_39134_CDS 3 48 1 54 PF03004.14 Transposase_24 Family 39 84 142 31.5 1.6e-07 1 No_clan
Cotton_A_05246_CDS 71 214 71 214 PF09588.10 YqaJ Domain 1 148 148 67.8 1.1e-18 1 CL0236
Cotton_A_12944_CDS 107 249 107 250 PF00388.19 PI-PLC-X Family 1 144 145 170.1 2.1e-50 1 CL0384
Cotton_A_12944_CDS 330 418 305 418 PF00387.19 PI-PLC-Y Family 26 115 115 97.0 8.3e-28 1 CL0384
Cotton_A_12944_CDS 461 541 439 552 PF00168.30 C2 Domain 17 93 103 38.4 1.2e-09 1 CL0154
Cotton_A_15258_CDS 6 65 6 66 PF03931.15 Skp1_POZ Domain 1 62 63 72.7 2.1e-20 1 CL0033
Cotton_A_15258_CDS 109 156 109 156 PF01466.19 Skp1 Domain 1 48 48 84.1 5.2e-24 1 No_clan
Cotton_A_26505_CDS 22 117 5 123 PF03095.15 PTPA Family 55 156 301 103.8 1.1e-29 1 No_clan
Cotton_A_19666_CDS 9 215 9 230 PF03153.13 TFIIA Family 1 185 415 58.1 1.5e-15 1 No_clan
Cotton_A_19666_CDS 245 389 210 390 PF03153.13 TFIIA Family 297 414 415 112.8 3.9e-32 1 No_clan
Cotton_A_20178_CDS 336 417 313 422 PF07500.14 TFIIS_M Domain 25 107 112 100.5 7.4e-29 1 No_clan
Cotton_A_20178_CDS 621 768 619 769 PF07744.13 SPOC Domain 3 150 151 72.3 3.8e-20 1 CL0616
Cotton_A_01692_CDS 47 195 45 195 PF01138.21 RNase_PH Domain 3 132 132 63.0 3.8e-17 1 CL0329
Cotton_A_01692_CDS 232 280 230 307 PF03725.15 RNase_PH_C Domain 3 51 67 25.7 8.5e-06 1 No_clan
Cotton_A_25182_CDS 13 123 12 126 PF01412.18 ArfGap Domain 2 114 117 92.8 1.4e-26 1 No_clan
Cotton_A_00690_CDS 139 401 126 401 PF02784.16 Orn_Arg_deC_N Domain 14 247 247 134.4 4.3e-39 1 CL0036
Cotton_A_23351_CDS 62 270 62 272 PF13419.6 HAD_2 Family 1 176 178 79.1 4.1e-22 1 CL0137
Cotton_A_24929_CDS 38 485 38 490 PF13520.6 AA_permease_2 Family 1 423 425 205.6 1.1e-60 1 CL0062
Cotton_A_10630_CDS 10 232 9 267 PF00069.25 Pkinase Domain 2 213 264 89.6 2.1e-25 1 CL0016
Cotton_A_24479_CDS 83 113 78 114 PF00514.23 Arm Repeat 10 40 41 21.3 0.0002 1 CL0020
Cotton_A_24479_CDS 2024 2115 2024 2124 PF00168.30 C2 Domain 1 94 103 42.3 7.2e-11 1 CL0154
Cotton_A_09276_CDS 915 990 904 991 PF00004.29 AAA Domain 59 131 132 42.6 7.4e-11 1 CL0023
Cotton_A_09276_CDS 1139 1313 1127 1313 PF01434.18 Peptidase_M41 Domain 16 191 191 49.7 3.7e-13 1 CL0126
Cotton_A_23322_CDS 209 345 209 346 PF07534.16 TLD Domain 1 138 139 105.7 2.2e-30 1 No_clan
Cotton_A_29241_CDS 5 141 3 143 PF03800.14 Nuf2 Family 3 137 139 106.0 1.7e-30 1 No_clan
Cotton_A_34550_CDS 13 56 11 57 PF03107.16 C1_2 Domain 3 46 47 37.4 2.4e-09 1 CL0006
Cotton_A_15007_CDS 202 216 202 216 PF02810.15 SEC-C Family 1 15 19 21.5 0.00016 1 No_clan
Cotton_A_00658_CDS 58 107 58 108 PF00010.26 HLH Domain 1 52 53 35.0 9.8e-09 1 No_clan
Cotton_A_34599_CDS 39 124 37 128 PF00153.27 Mito_carr Family 4 91 97 78.0 3.8e-22 1 No_clan
Cotton_A_34599_CDS 143 233 139 234 PF00153.27 Mito_carr Family 5 96 97 89.0 1.4e-25 1 No_clan
Cotton_A_34599_CDS 243 346 242 349 PF00153.27 Mito_carr Family 2 93 97 85.0 2.6e-24 1 No_clan
Cotton_A_39290_CDS 210 476 209 476 PF07766.13 LETM1 Family 2 268 268 366.9 5.8e-110 1 No_clan
Cotton_A_23225_CDS 24 335 24 335 PF00657.22 Lipase_GDSL Family 1 200 200 96.2 2.4e-27 1 CL0264
Cotton_A_05555_CDS 71 157 71 158 PF03330.18 DPBB_1 Domain 1 82 83 75.8 2.3e-21 1 CL0199
Cotton_A_05555_CDS 191 268 191 268 PF01357.21 Pollen_allerg_1 Domain 1 80 80 92.5 1.2e-26 1 CL0159
Cotton_A_17050_CDS 7 99 4 100 PF00153.27 Mito_carr Family 5 96 97 74.3 5.7e-21 1 No_clan
Cotton_A_17050_CDS 104 196 102 198 PF00153.27 Mito_carr Family 3 95 97 84.9 2.7e-24 1 No_clan
Cotton_A_17050_CDS 213 302 210 305 PF00153.27 Mito_carr Family 5 94 97 75.4 2.4e-21 1 No_clan
Cotton_A_06623_CDS 411 609 410 609 PF08161.12 NUC173 Domain 2 204 204 152.7 1e-44 1 No_clan
Cotton_A_30106_CDS 19 135 19 135 PF02136.20 NTF2 Domain 1 120 120 116.3 1.2e-33 1 CL0051
Cotton_A_30106_CDS 304 360 304 370 PF00076.22 RRM_1 Domain 1 59 70 51.4 7e-14 1 CL0221
Cotton_A_17835_CDS 87 245 87 251 PF13023.6 HD_3 Domain 1 160 165 165.3 1.1e-48 1 CL0237
Cotton_A_25047_CDS 127 221 126 221 PF02410.15 RsfS Family 2 99 99 71.9 4.4e-20 1 CL0260
Cotton_A_10949_CDS 178 287 168 289 PF01553.21 Acyltransferase Family 13 133 135 46.4 2.8e-12 1 CL0228
Cotton_A_10949_CDS 471 529 467 532 PF13499.6 EF-hand_7 Domain 4 68 71 45.9 5.7e-12 1 CL0220
Cotton_A_19534_CDS 61 104 60 104 PF13639.6 zf-RING_2 Domain 2 44 44 44.0 2e-11 1 CL0229
Cotton_A_18744_CDS 16 101 12 102 PF02519.14 Auxin_inducible Family 2 89 90 102.0 1.5e-29 1 No_clan
Cotton_A_16824_CDS 51 451 50 452 PF03514.14 GRAS Family 2 373 374 313.5 1.8e-93 1 CL0063
Cotton_A_16824_CDS 468 731 464 732 PF12767.7 SAGA-Tad1 Family 6 234 235 173.8 4.8e-51 1 No_clan
Cotton_A_17105_CDS 45 99 43 100 PF00847.20 AP2 Domain 3 53 54 29.5 6.6e-07 1 CL0081
Cotton_A_17105_CDS 142 193 142 194 PF00847.20 AP2 Domain 1 53 54 46.6 3e-12 1 CL0081
Cotton_A_20269_CDS 419 559 419 560 PF12009.8 Telomerase_RBD Domain 1 133 134 120.4 5.3e-35 1 No_clan
Cotton_A_20269_CDS 803 918 777 959 PF00078.27 RVT_1 Family 123 205 222 30.5 2.3e-07 1 CL0027
Cotton_A_14164_CDS 2 89 1 91 PF00685.27 Sulfotransfer_1 Domain 181 265 267 53.5 2.3e-14 1 CL0023
Cotton_A_25073_CDS 65 206 64 206 PF04043.15 PMEI Domain 2 154 154 69.7 3.3e-19 1 No_clan
Cotton_A_25073_CDS 253 559 253 559 PF01095.19 Pectinesterase Family 1 298 298 405.1 1.1e-121 1 CL0268
Cotton_A_07303_CDS 24 460 10 464 PF02458.15 Transferase Family 16 429 434 162.4 1.3e-47 1 CL0149
Cotton_A_02256_CDS 18 107 12 110 PF00153.27 Mito_carr Family 8 93 97 61.6 5.2e-17 1 No_clan
Cotton_A_02256_CDS 113 209 111 210 PF00153.27 Mito_carr Family 3 96 97 75.5 2.4e-21 1 No_clan
Cotton_A_02256_CDS 214 303 212 308 PF00153.27 Mito_carr Family 3 91 97 66.5 1.5e-18 1 No_clan
Cotton_A_17985_CDS 51 111 50 111 PF00891.18 Methyltransf_2 Domain 153 210 210 42.7 3.8e-11 1 CL0063
Cotton_A_11138_CDS 132 250 132 251 PF07227.11 PHD_Oberon Family 1 129 130 115.7 1.3e-33 1 CL0390
Cotton_A_11138_CDS 338 416 331 419 PF00041.21 fn3 Domain 8 82 85 30.5 3.5e-07 1 CL0159
Cotton_A_09820_CDS 93 115 90 116 PF00642.24 zf-CCCH Family 4 26 27 27.8 1.7e-06 1 CL0537
Cotton_A_09820_CDS 138 159 134 160 PF00642.24 zf-CCCH Family 5 26 27 25.3 1e-05 1 CL0537
Cotton_A_09820_CDS 198 220 195 220 PF00642.24 zf-CCCH Family 5 27 27 25.7 7.4e-06 1 CL0537
Cotton_A_09820_CDS 248 270 247 271 PF00642.24 zf-CCCH Family 4 26 27 36.5 3.2e-09 1 CL0537
Cotton_A_09820_CDS 385 410 384 410 PF00642.24 zf-CCCH Family 2 27 27 32.9 4.2e-08 1 CL0537
Cotton_A_09820_CDS 428 453 427 453 PF00642.24 zf-CCCH Family 2 27 27 23.9 2.8e-05 1 CL0537
Cotton_A_13410_CDS 68 113 68 113 PF12906.7 RINGv Domain 1 48 48 42.3 6.1e-11 1 CL0229
Cotton_A_13410_CDS 119 237 119 237 PF12428.8 DUF3675 Family 1 119 119 154.8 1.3e-45 1 No_clan
Cotton_A_10309_CDS 93 137 78 159 PF00300.22 His_Phos_1 Domain 112 157 194 22.7 6.5e-05 1 CL0071
Cotton_A_10309_CDS 228 286 228 286 PF03962.15 Mnd1 Domain 1 60 60 89.4 1.3e-25 1 CL0123
Cotton_A_10309_CDS 362 418 361 418 PF18517.1 LZ3wCH Domain 2 55 55 73.7 9.4e-21 1 No_clan
Cotton_A_28370_CDS 95 144 94 145 PF00847.20 AP2 Domain 3 53 54 51.0 1.2e-13 1 CL0081
Cotton_A_20113_CDS 193 278 193 284 PF00004.29 AAA Domain 1 68 132 31.4 2.1e-07 1 CL0023
Cotton_A_39763_CDS 12 266 12 266 PF00069.25 Pkinase Domain 1 264 264 262.0 5.5e-78 1 CL0016
Cotton_A_39763_CDS 305 363 305 364 PF03822.14 NAF Domain 1 53 54 75.0 3.8e-21 1 CL0573
Cotton_A_06083_CDS 70 465 64 467 PF00501.28 AMP-binding Family 10 421 423 341.9 4.1e-102 1 CL0378
Cotton_A_06083_CDS 475 550 475 550 PF13193.6 AMP-binding_C Domain 1 76 76 62.2 6.7e-17 1 CL0531
Cotton_A_14236_CDS 14 51 13 52 PF08263.12 LRRNT_2 Family 4 40 41 36.9 3.2e-09 1 No_clan
Cotton_A_14236_CDS 105 127 105 127 PF00560.33 LRR_1 Repeat 1 23 23 10.8 0.65 1 CL0022
Cotton_A_14236_CDS 205 261 201 261 PF13855.6 LRR_8 Repeat 6 61 61 36.8 2.5e-09 1 CL0022
Cotton_A_38132_CDS 7 151 2 152 PF00083.24 Sugar_tr Family 229 370 452 86.7 1.5e-24 1 CL0015
Cotton_A_07375_CDS 42 92 41 92 PF00249.31 Myb_DNA-binding Domain 2 46 46 32.0 1e-07 1 CL0123
Cotton_A_07375_CDS 137 183 136 183 PF14379.6 Myb_CC_LHEQLE Family 2 48 48 93.0 6.5e-27 1 No_clan
Cotton_A_00969_CDS 24 178 23 179 PF06703.11 SPC25 Family 2 161 162 120.7 5.1e-35 1 No_clan
Cotton_A_21594_CDS 158 185 158 185 PF01535.20 PPR Family 4 31 31 18.6 0.0016 1 CL0020
Cotton_A_21594_CDS 215 265 214 265 PF13041.6 PPR_2 Repeat 2 49 50 38.8 7.7e-10 1 CL0020
Cotton_A_21594_CDS 293 318 293 320 PF01535.20 PPR Family 4 29 31 22.3 0.0001 1 CL0020
Cotton_A_21594_CDS 319 366 318 367 PF13041.6 PPR_2 Repeat 2 49 50 33.0 5e-08 1 CL0020
Cotton_A_21594_CDS 394 418 392 420 PF01535.20 PPR Family 3 27 31 11.9 0.21 1 CL0020
Cotton_A_21594_CDS 467 488 465 488 PF01535.20 PPR Family 10 31 31 12.8 0.11 1 CL0020
Cotton_A_33221_CDS 13 73 4 74 PF01504.18 PIP5K Family 213 273 274 73.8 1.3e-20 1 CL0016
Cotton_A_11575_CDS 57 162 57 162 PF13085.6 Fer2_3 Domain 1 109 109 115.5 1.1e-33 1 CL0486
Cotton_A_11575_CDS 199 272 199 272 PF13534.6 Fer4_17 Domain 1 61 61 36.2 6.3e-09 1 CL0344
Cotton_A_37077_CDS 110 131 109 134 PF13202.6 EF-hand_5 Domain 2 23 25 22.6 4.8e-05 1 CL0220
Cotton_A_37077_CDS 175 203 174 203 PF13405.6 EF-hand_6 Domain 2 31 31 28.7 6.9e-07 1 CL0220
Cotton_A_38176_CDS 32 116 21 116 PF00234.22 Tryp_alpha_amyl Family 3 87 87 33.2 5.2e-08 1 CL0482
Cotton_A_12374_CDS 15 155 15 155 PF05512.11 AWPM-19 Family 1 142 142 216.7 1.3e-64 1 No_clan
Cotton_A_11736_CDS 141 170 140 170 PF01535.20 PPR Family 2 31 31 10.1 0.79 1 CL0020
Cotton_A_11736_CDS 314 362 314 363 PF13041.6 PPR_2 Repeat 1 49 50 48.2 9.2e-13 1 CL0020
Cotton_A_36715_CDS 51 214 51 215 PF14543.6 TAXi_N Domain 1 177 178 137.1 7.1e-40 1 CL0129
Cotton_A_36715_CDS 235 311 234 313 PF14541.6 TAXi_C Domain 2 82 161 46.6 3e-12 1 CL0129
Cotton_A_23729_CDS 134 363 133 365 PF00682.19 HMGL-like Domain 2 226 264 147.9 3.8e-43 1 CL0036
Cotton_A_24066_CDS 4 191 3 192 PF11705.8 RNA_pol_3_Rpc31 Family 1 226 226 60.0 4e-16 1 No_clan
Cotton_A_14866_CDS 15 72 15 72 PF13921.6 Myb_DNA-bind_6 Domain 1 57 60 60.5 1.3e-16 1 CL0123
Cotton_A_08705_CDS 100 461 99 462 PF01566.18 Nramp Family 2 357 358 400.3 7e-120 1 CL0062
Cotton_A_21385_CDS 41 115 40 116 PF01253.22 SUI1 Domain 2 76 77 91.3 4.1e-26 1 No_clan
Cotton_A_18210_CDS 282 553 282 557 PF00069.25 Pkinase Domain 1 258 264 169.7 7.6e-50 1 CL0016
Cotton_A_22285_CDS 167 392 164 403 PF00931.22 NB-ARC Domain 4 237 252 169.5 7.3e-50 1 CL0023
Cotton_A_22285_CDS 599 656 598 657 PF13855.6 LRR_8 Repeat 2 59 61 27.2 2.4e-06 1 CL0022
Cotton_A_17211_CDS 56 195 23 200 PF00117.28 GATase Domain 39 175 190 55.2 7.7e-15 1 CL0014
Cotton_A_25494_CDS 2 81 2 103 PF10961.8 SelK_SelG Family 1 83 86 84.2 7.1e-24 1 No_clan
Cotton_A_02685_CDS 42 109 42 109 PF16209.5 PhoLip_ATPase_N Family 1 67 67 82.4 1.3e-23 1 No_clan
Cotton_A_02685_CDS 536 639 535 642 PF13246.6 Cation_ATPase Family 2 87 91 46.7 2.5e-12 1 CL0137
Cotton_A_02685_CDS 894 1144 894 1145 PF16212.5 PhoLip_ATPase_C Family 1 248 249 277.7 9.7e-83 1 No_clan
Cotton_A_34051_CDS 5 80 4 82 PF01459.22 Porin_3 Family 2 80 270 47.0 2.2e-12 1 CL0193
Cotton_A_11918_CDS 47 112 46 132 PF13774.6 Longin Domain 2 67 84 44.8 9.6e-12 1 No_clan
Cotton_A_11918_CDS 137 194 136 197 PF00957.21 Synaptobrevin Family 2 59 89 54.2 9.5e-15 1 CL0445
Cotton_A_40980_CDS 21 354 19 355 PF03214.13 RGP Family 3 341 342 589.3 2.2e-177 1 CL0110
Cotton_A_12701_CDS 216 387 214 388 PF03352.13 Adenine_glyco Family 3 176 177 211.2 9.1e-63 1 No_clan
Cotton_A_22523_CDS 51 292 46 292 PF04427.18 Brix Domain 7 193 193 155.4 1.8e-45 1 CL0458
Cotton_A_16586_CDS 1 97 1 102 PF01373.17 Glyco_hydro_14 Domain 133 234 402 92.3 2.9e-26 1 CL0058
Cotton_A_16586_CDS 107 196 99 199 PF01373.17 Glyco_hydro_14 Domain 286 368 402 83.5 1.4e-23 1 CL0058
Cotton_A_29709_CDS 6 101 5 108 PF00168.30 C2 Domain 2 93 103 39.1 7e-10 1 CL0154
Cotton_A_20180_CDS 69 103 64 103 PF08263.12 LRRNT_2 Family 6 41 41 25.3 1.4e-05 1 No_clan
Cotton_A_20180_CDS 256 315 255 315 PF13855.6 LRR_8 Repeat 2 61 61 28.8 7.5e-07 1 CL0022
Cotton_A_39387_CDS 56 112 53 119 PF00168.30 C2 Domain 8 59 103 25.4 1.3e-05 1 CL0154
Cotton_A_37886_CDS 52 637 34 667 PF03999.12 MAP65_ASE1 Family 17 575 598 435.3 4.1e-130 1 No_clan
Cotton_A_18581_CDS 54 96 52 96 PF13639.6 zf-RING_2 Domain 3 44 44 33.4 4.2e-08 1 CL0229
Cotton_A_18581_CDS 145 189 144 191 PF00628.29 PHD Domain 2 50 52 35.4 7.1e-09 1 CL0390
Cotton_A_29413_CDS 70 127 67 127 PF13855.6 LRR_8 Repeat 5 61 61 31.7 9.2e-08 1 CL0022
Cotton_A_29413_CDS 248 307 247 307 PF13855.6 LRR_8 Repeat 2 61 61 28.4 1e-06 1 CL0022
Cotton_A_29413_CDS 384 441 383 441 PF13855.6 LRR_8 Repeat 4 61 61 33.7 2.2e-08 1 CL0022
Cotton_A_26201_CDS 38 96 37 96 PF00226.31 DnaJ Domain 2 63 63 31.8 1.1e-07 1 CL0392
Cotton_A_05224_CDS 14 109 13 111 PF03195.14 LOB Family 2 96 99 119.0 1.1e-34 1 No_clan
Cotton_A_25376_CDS 95 227 95 228 PF03350.16 UPF0114 Family 1 117 118 135.0 1.3e-39 1 No_clan
Cotton_A_38270_CDS 281 339 266 339 PF02201.18 SWIB Domain 15 74 74 53.3 1.9e-14 1 No_clan
Cotton_A_38270_CDS 406 508 406 509 PF03126.18 Plus-3 Domain 1 108 109 80.4 1.2e-22 1 No_clan
Cotton_A_38270_CDS 681 721 681 725 PF02213.16 GYF Domain 1 41 45 45.4 4.5e-12 1 CL0673
Cotton_A_18782_CDS 24 100 23 106 PF16561.5 AMPK1_CBM Family 2 75 85 78.7 3e-22 1 CL0369
Cotton_A_18782_CDS 355 401 350 406 PF00571.28 CBS Domain 6 52 57 30.7 3.1e-07 1 No_clan
Cotton_A_18782_CDS 441 487 432 488 PF00571.28 CBS Domain 11 56 57 32.1 1.2e-07 1 No_clan
Cotton_A_05457_CDS 43 132 17 142 PF00179.26 UQ_con Domain 24 111 140 50.0 2.3e-13 1 CL0208
Cotton_A_05629_CDS 15 75 12 79 PF05254.12 UPF0203 Family 3 63 69 81.5 3.9e-23 1 No_clan
Cotton_A_23172_CDS 101 195 100 199 PF03168.13 LEA_2 Domain 2 96 101 30.7 3.4e-07 1 CL0159
Cotton_A_23310_CDS 1 76 1 76 PF02798.20 GST_N Domain 1 76 76 67.3 1.1e-18 1 CL0172
Cotton_A_23310_CDS 110 203 99 203 PF00043.25 GST_C Domain 3 93 93 61.2 8.1e-17 1 CL0497
Cotton_A_33938_CDS 34 111 34 118 PF02298.17 Cu_bind_like Domain 1 81 84 60.5 1.2e-16 1 CL0026
Cotton_A_23617_CDS 689 1034 681 1034 PF13086.6 AAA_11 Domain 4 261 261 230.1 3.9e-68 1 CL0023
Cotton_A_23617_CDS 1041 1237 1041 1238 PF13087.6 AAA_12 Domain 1 198 199 198.9 6.6e-59 1 CL0023
Cotton_A_19492_CDS 108 409 105 410 PF06012.12 DUF908 Family 5 357 358 112.7 2.5e-32 1 No_clan
Cotton_A_19492_CDS 472 807 471 809 PF06025.12 DUF913 Family 3 364 368 209.1 9.5e-62 1 No_clan
Cotton_A_19492_CDS 1306 1343 1306 1343 PF00627.31 UBA Domain 1 37 37 36.5 3.3e-09 1 CL0214
Cotton_A_19492_CDS 2587 2614 2582 2616 PF14377.6 UBM Repeat 6 33 35 33.8 1.5e-08 1 No_clan
Cotton_A_19492_CDS 2625 2653 2621 2654 PF14377.6 UBM Repeat 5 34 35 42.7 2.4e-11 1 No_clan
Cotton_A_19492_CDS 2661 2692 2659 2693 PF14377.6 UBM Repeat 3 34 35 27.3 1.7e-06 1 No_clan
Cotton_A_19492_CDS 3359 3670 3358 3670 PF00632.25 HECT Domain 2 307 307 321.2 7.8e-96 1 CL0552
Cotton_A_31568_CDS 3 495 2 504 PF00743.19 FMO-like Family 2 446 532 136.9 7.4e-40 1 CL0063
Cotton_A_26113_CDS 36 96 18 99 PF15511.6 CENP-T_C Domain 19 79 108 34.4 1.8e-08 1 CL0012
Cotton_A_30565_CDS 450 779 450 781 PF00225.23 Kinesin Domain 1 331 333 366.4 1.1e-109 1 CL0023
Cotton_A_21009_CDS 15 168 14 168 PF00160.21 Pro_isomerase Domain 2 158 158 150.4 4.7e-44 1 CL0475
Cotton_A_33317_CDS 17 74 15 74 PF01424.22 R3H Domain 3 60 60 32.1 8.6e-08 1 No_clan
Cotton_A_33317_CDS 202 245 202 246 PF01585.23 G-patch Family 1 44 45 53.0 2.2e-14 1 CL0449
Cotton_A_33317_CDS 290 333 290 334 PF01585.23 G-patch Family 1 44 45 58.2 5.6e-16 1 CL0449
Cotton_A_14495_CDS 24 303 15 304 PF03151.16 TPT Family 11 289 290 53.1 2.9e-14 1 CL0184
Cotton_A_21479_CDS 108 288 108 288 PF00390.19 malic Domain 1 182 182 245.6 2.8e-73 1 CL0603
Cotton_A_21479_CDS 298 575 298 575 PF03949.15 Malic_M Domain 1 258 258 280.9 7.9e-84 1 CL0063
Cotton_A_16189_CDS 8 168 8 169 PF00071.22 Ras Domain 1 161 162 205.5 3.5e-61 1 CL0023
Cotton_A_06704_CDS 41 369 40 370 PF11955.8 PORR Family 2 325 326 362.2 2e-108 1 No_clan
Cotton_A_02140_CDS 139 224 137 228 PF17125.5 Methyltr_RsmF_N Domain 4 84 90 32.8 7.3e-08 1 CL0063
Cotton_A_02140_CDS 243 312 243 313 PF01189.17 Methyltr_RsmB-F Family 1 70 200 87.5 8.8e-25 1 CL0063
Cotton_A_13551_CDS 166 274 163 276 PF03767.14 Acid_phosphat_B Family 115 228 230 52.2 6e-14 1 CL0137
Cotton_A_12034_CDS 76 132 75 133 PF02701.15 zf-Dof Family 2 58 59 110.5 3e-32 1 No_clan
Cotton_A_02585_CDS 96 162 96 166 PF00076.22 RRM_1 Domain 1 66 70 55.9 2.7e-15 1 CL0221
Cotton_A_11586_CDS 183 223 183 224 PF00646.33 F-box Domain 7 47 48 19.9 0.00048 1 CL0271
Cotton_A_22160_CDS 189 232 188 232 PF13639.6 zf-RING_2 Domain 2 44 44 45.8 5.4e-12 1 CL0229
Cotton_A_12635_CDS 1 48 1 51 PF08132.11 AdoMetDC_leader Family 1 46 51 87.8 3.3e-25 1 No_clan
Cotton_A_12635_CDS 81 404 79 405 PF01536.16 SAM_decarbox Family 3 354 355 369.1 2.2e-110 1 No_clan
Cotton_A_09014_CDS 2 71 1 71 PF12783.7 Sec7_N Domain 91 158 158 55.6 5.5e-15 1 No_clan
Cotton_A_09014_CDS 181 363 180 363 PF01369.20 Sec7 Domain 2 183 183 245.7 2.4e-73 1 No_clan
Cotton_A_09014_CDS 731 813 731 814 PF09324.10 DUF1981 Family 1 83 84 100.3 4.1e-29 1 No_clan
Cotton_A_04225_CDS 33 185 30 187 PF03357.21 Snf7 Family 17 171 173 86.7 1.4e-24 1 CL0235
Cotton_A_40903_CDS 292 363 292 364 PF04564.15 U-box Domain 1 72 73 67.7 7.4e-19 1 CL0229
Cotton_A_40903_CDS 427 464 425 465 PF00514.23 Arm Repeat 3 40 41 32.6 5.5e-08 1 CL0020
Cotton_A_27975_CDS 33 173 32 173 PF04535.12 DUF588 Domain 2 150 150 133.6 4.4e-39 1 CL0396
Cotton_A_16605_CDS 118 200 118 201 PF14547.6 Hydrophob_seed Domain 1 84 85 83.2 1.1e-23 1 CL0482
Cotton_A_12717_CDS 189 272 186 273 PF00564.24 PB1 Domain 4 83 84 67.9 5.4e-19 1 CL0072
Cotton_A_12717_CDS 930 1191 928 1191 PF07714.17 Pkinase_Tyr Domain 3 259 259 208.3 1.2e-61 1 CL0016
Cotton_A_06142_CDS 45 205 45 215 PF03634.13 TCP Family 1 145 156 140.0 9e-41 1 No_clan
Cotton_A_07141_CDS 95 174 93 174 PF14389.6 Lzipper-MIP1 Family 4 84 84 78.2 4.2e-22 1 No_clan
Cotton_A_07141_CDS 377 514 375 514 PF04784.14 DUF547 Family 3 123 123 116.8 5.6e-34 1 No_clan
Cotton_A_18447_CDS 11 127 8 129 PF01873.17 eIF-5_eIF-2B Family 4 115 117 127.7 1.9e-37 1 CL0123
Cotton_A_18447_CDS 367 445 366 445 PF02020.18 W2 Family 2 79 79 76.2 1.6e-21 1 CL0020
Cotton_A_05452_CDS 81 135 80 135 PF17181.4 EPF Family 2 53 53 77.0 8.2e-22 1 No_clan
Cotton_A_17296_CDS 153 361 153 362 PF03360.16 Glyco_transf_43 Family 1 204 205 243.4 1.9e-72 1 CL0110
Cotton_A_26225_CDS 16 114 14 116 PF00307.31 CH Domain 4 107 109 40.0 3.5e-10 1 CL0188
Cotton_A_26225_CDS 204 242 204 242 PF03271.17 EB1 Family 1 41 41 68.5 4.3e-19 1 No_clan
Cotton_A_35086_CDS 24 341 24 343 PF00332.18 Glyco_hydro_17 Domain 1 311 313 265.8 6.5e-79 1 CL0058
Cotton_A_35086_CDS 360 430 359 430 PF07983.13 X8 Domain 2 76 76 76.9 1.5e-21 1 No_clan
Cotton_A_30120_CDS 140 325 135 325 PF00544.19 Pec_lyase_C Domain 28 211 211 81.5 6e-23 1 CL0268
Cotton_A_34008_CDS 153 196 152 196 PF13639.6 zf-RING_2 Domain 2 44 44 50.2 2.4e-13 1 CL0229
Cotton_A_32663_CDS 67 269 67 289 PF10536.9 PMD Domain 1 202 363 235.2 1.2e-69 1 No_clan
Cotton_A_00660_CDS 72 214 72 215 PF00810.18 ER_lumen_recept Family 1 146 147 137.5 5.8e-40 1 CL0141
Cotton_A_04023_CDS 8 230 8 237 PF01370.21 Epimerase Family 1 231 241 83.5 1.5e-23 1 CL0063
Cotton_A_12382_CDS 114 386 113 391 PF00982.21 Glyco_transf_20 Family 2 279 474 300.0 2.7e-89 1 CL0113
Cotton_A_12382_CDS 399 601 387 602 PF00982.21 Glyco_transf_20 Family 270 473 474 299.2 4.9e-89 1 CL0113
Cotton_A_12382_CDS 659 865 647 883 PF02358.16 Trehalose_PPase Family 15 215 233 181.3 1.5e-53 1 CL0137
Cotton_A_13479_CDS 13 164 11 165 PF04970.13 LRAT Domain 3 126 127 107.6 5.2e-31 1 CL0125
Cotton_A_28631_CDS 37 146 37 151 PF14226.6 DIOX_N Family 1 117 118 82.4 4e-23 1 CL0029
Cotton_A_28631_CDS 192 288 190 289 PF03171.20 2OG-FeII_Oxy Domain 3 100 101 91.3 4.5e-26 1 CL0029
Cotton_A_37909_CDS 12 178 12 180 PF00071.22 Ras Domain 1 160 162 188.5 6e-56 1 CL0023
Cotton_A_34366_CDS 9 105 7 107 PF00153.27 Mito_carr Family 3 95 97 70.5 8.3e-20 1 No_clan
Cotton_A_34366_CDS 115 200 112 203 PF00153.27 Mito_carr Family 4 93 97 70.3 9.8e-20 1 No_clan
Cotton_A_34366_CDS 208 294 206 298 PF00153.27 Mito_carr Family 4 93 97 60.8 9.1e-17 1 No_clan
Cotton_A_15815_CDS 10 57 10 57 PF00319.18 SRF-TF Domain 1 48 48 86.0 8.4e-25 1 No_clan
Cotton_A_15815_CDS 92 171 83 172 PF01486.17 K-box Family 13 92 93 48.4 8e-13 1 No_clan
Cotton_A_22820_CDS 65 110 65 111 PF18072.1 FGAR-AT_linker Domain 1 45 50 30.8 3.1e-07 1 No_clan
Cotton_A_22820_CDS 235 337 230 339 PF02769.22 AIRS_C Domain 9 107 156 40.8 2.3e-10 1 No_clan
Cotton_A_16692_CDS 79 109 77 109 PF06200.14 tify Domain 4 34 34 36.6 2e-09 1 No_clan
Cotton_A_16692_CDS 141 183 141 184 PF06203.14 CCT Motif 1 43 44 58.5 5e-16 1 CL0281
Cotton_A_16692_CDS 205 241 205 242 PF00320.27 GATA Domain 1 35 36 53.0 1.8e-14 1 CL0167
Cotton_A_27580_CDS 43 82 42 83 PF18511.1 F-box_5 Domain 2 41 42 73.8 5.7e-21 1 CL0271
Cotton_A_27580_CDS 103 148 102 148 PF18791.1 Transp_inhibit Family 2 47 47 82.1 1.5e-23 1 No_clan
Cotton_A_05297_CDS 56 124 56 126 PF07983.13 X8 Domain 1 74 76 67.5 1.2e-18 1 No_clan
Cotton_A_37584_CDS 54 217 53 217 PF05078.12 DUF679 Family 2 163 163 190.4 2.1e-56 1 No_clan
Cotton_A_24775_CDS 20 83 18 84 PF00690.26 Cation_ATPase_N Domain 3 68 69 50.1 1.6e-13 1 No_clan
Cotton_A_24775_CDS 132 310 130 311 PF00122.20 E1-E2_ATPase Family 3 180 181 160.3 3.3e-47 1 No_clan
Cotton_A_24775_CDS 327 633 327 633 PF00702.26 Hydrolase Domain 1 210 210 49.5 6.4e-13 1 CL0137
Cotton_A_17601_CDS 14 117 14 117 PF02991.16 Atg8 Domain 1 104 104 166.8 1.1e-49 1 CL0072
Cotton_A_05043_CDS 160 187 160 187 PF05678.14 VQ Motif 1 28 28 40.0 1.9e-10 1 No_clan
Cotton_A_24009_CDS 24 435 13 443 PF05786.14 Cnd2 Family 10 468 766 264.2 3.3e-78 1 No_clan
Cotton_A_29893_CDS 130 224 121 225 PF00085.20 Thioredoxin Domain 10 102 103 73.8 8.8e-21 1 CL0172
Cotton_A_01400_CDS 156 314 156 316 PF14543.6 TAXi_N Domain 1 175 178 167.1 4.4e-49 1 CL0129
Cotton_A_01400_CDS 337 488 337 489 PF14541.6 TAXi_C Domain 1 160 161 131.6 2.2e-38 1 CL0129
Cotton_A_16112_CDS 196 213 196 218 PF02493.20 MORN Repeat 1 18 23 18.2 0.0016 1 CL0251
Cotton_A_16112_CDS 219 241 219 241 PF02493.20 MORN Repeat 1 23 23 21.7 0.00013 1 CL0251
Cotton_A_16112_CDS 242 263 242 264 PF02493.20 MORN Repeat 1 22 23 22.1 9.3e-05 1 CL0251
Cotton_A_16112_CDS 265 286 265 287 PF02493.20 MORN Repeat 1 22 23 23.0 4.7e-05 1 CL0251
Cotton_A_16112_CDS 288 309 288 310 PF02493.20 MORN Repeat 1 22 23 22.4 7.6e-05 1 CL0251
Cotton_A_16112_CDS 311 332 311 333 PF02493.20 MORN Repeat 1 22 23 25.4 8.3e-06 1 CL0251
Cotton_A_16112_CDS 334 356 334 356 PF02493.20 MORN Repeat 1 23 23 26.3 4.2e-06 1 CL0251
Cotton_A_24474_CDS 104 465 103 466 PF00155.21 Aminotran_1_2 Domain 2 362 363 232.8 6.7e-69 1 CL0061
Cotton_A_07119_CDS 125 345 125 364 PF02358.16 Trehalose_PPase Family 1 205 233 234.4 8.8e-70 1 CL0137
Cotton_A_21814_CDS 1 156 1 156 PF00407.19 Bet_v_1 Domain 1 151 151 81.1 7.6e-23 1 CL0209
Cotton_A_12770_CDS 7 89 1 99 PF12638.7 Staygreen Domain 17 101 148 80.0 1.5e-22 1 No_clan
Cotton_A_38475_CDS 4 34 2 35 PF00076.22 RRM_1 Domain 39 69 70 21.1 0.00021 1 CL0221
Cotton_A_08279_CDS 3 43 2 43 PF18511.1 F-box_5 Domain 2 42 42 78.1 2.6e-22 1 CL0271
Cotton_A_08279_CDS 62 108 62 108 PF18791.1 Transp_inhibit Family 1 47 47 89.8 5.7e-26 1 No_clan
Cotton_A_29994_CDS 63 222 62 223 PF00504.21 Chloroa_b-bind Family 2 160 161 161.8 1.9e-47 1 No_clan
Cotton_A_22631_CDS 73 345 70 345 PF07714.17 Pkinase_Tyr Domain 5 259 259 157.2 4.7e-46 1 CL0016
Cotton_A_38484_CDS 331 624 329 624 PF01008.17 IF-2B Family 3 282 282 261.3 9.3e-78 1 CL0246
Cotton_A_03145_CDS 278 434 277 434 PF13359.6 DDE_Tnp_4 Domain 2 158 158 118.7 1.8e-34 1 CL0219
Cotton_A_21721_CDS 65 166 63 166 PF02225.22 PA Family 3 89 89 39.6 3.8e-10 1 CL0364
Cotton_A_12914_CDS 68 123 67 149 PF03061.22 4HBT Domain 2 59 79 28.2 1.7e-06 1 CL0050
Cotton_A_22336_CDS 2 108 1 108 PF00477.17 LEA_5 Family 3 109 109 190.6 6.9e-57 1 CL0385
Cotton_A_41214_CDS 41 388 40 391 PF11744.8 ALMT Family 2 348 469 512.7 9.2e-154 1 CL0307
Cotton_A_37319_CDS 6 92 4 92 PF09446.10 VMA21 Domain 3 64 64 68.1 5.4e-19 1 No_clan
Cotton_A_22392_CDS 142 345 140 412 PF00069.25 Pkinase Domain 3 199 264 136.2 1.3e-39 1 CL0016
Cotton_A_19065_CDS 125 168 124 168 PF13639.6 zf-RING_2 Domain 2 44 44 50.8 1.5e-13 1 CL0229
Cotton_A_15806_CDS 22 415 18 415 PF04791.16 LMBR1 Family 92 510 510 230.3 4.8e-68 1 No_clan
Cotton_A_19728_CDS 104 351 102 351 PF02784.16 Orn_Arg_deC_N Domain 3 247 247 166.4 7.2e-49 1 CL0036
Cotton_A_19728_CDS 129 442 97 442 PF00278.22 Orn_DAP_Arg_deC Domain 5 98 98 84.1 6e-24 1 No_clan
Cotton_A_26277_CDS 14 42 13 47 PF00646.33 F-box Domain 13 41 48 25.4 9.1e-06 1 CL0271
Cotton_A_07168_CDS 7 41 7 42 PF00320.27 GATA Domain 1 35 36 51.3 6.5e-14 1 CL0167
Cotton_A_07168_CDS 280 365 273 399 PF13919.6 ASXH Domain 7 106 139 43.6 2.8e-11 1 No_clan
Cotton_A_02739_CDS 45 103 44 104 PF00830.19 Ribosomal_L28 Family 2 59 60 66.4 1.9e-18 1 No_clan
Cotton_A_38335_CDS 147 271 147 271 PF01113.20 DapB_N Domain 1 124 124 66.3 2.7e-18 1 CL0063
Cotton_A_38335_CDS 275 415 274 415 PF05173.14 DapB_C Domain 2 121 121 69.9 1.9e-19 1 CL0139
Cotton_A_28934_CDS 86 149 79 149 PF00690.26 Cation_ATPase_N Domain 8 69 69 45.3 5.2e-12 1 No_clan
Cotton_A_28934_CDS 202 388 193 388 PF00122.20 E1-E2_ATPase Family 8 181 181 122.2 1.7e-35 1 No_clan
Cotton_A_28934_CDS 404 707 404 707 PF00702.26 Hydrolase Domain 1 210 210 53.5 3.8e-14 1 CL0137
Cotton_A_22637_CDS 31 83 31 84 PF00421.19 PSII Family 1 57 507 71.9 4.3e-20 1 No_clan
Cotton_A_25037_CDS 524 872 524 872 PF03372.23 Exo_endo_phos Domain 1 233 233 59.5 3.2e-16 1 CL0530
Cotton_A_25897_CDS 147 275 147 275 PF13578.6 Methyltransf_24 Domain 1 106 106 35.6 1.5e-08 1 CL0063
Cotton_A_28577_CDS 46 91 25 97 PF04281.13 Tom22 Family 82 127 138 29.0 7.5e-07 1 No_clan
Cotton_A_05299_CDS 555 795 555 796 PF08323.11 Glyco_transf_5 Domain 1 243 244 224.9 1.2e-66 1 CL0113
Cotton_A_05299_CDS 850 1006 843 1020 PF00534.20 Glycos_transf_1 Family 12 159 172 34.4 1.4e-08 1 CL0113
Cotton_A_27074_CDS 100 122 100 122 PF00560.33 LRR_1 Repeat 1 23 23 15.7 0.016 1 CL0022
Cotton_A_27074_CDS 148 170 148 170 PF00560.33 LRR_1 Repeat 1 23 23 11.4 0.39 1 CL0022
Cotton_A_27074_CDS 172 231 171 231 PF13855.6 LRR_8 Repeat 2 61 61 38.9 5.2e-10 1 CL0022
Cotton_A_27074_CDS 289 305 289 307 PF13516.6 LRR_6 Repeat 1 17 24 10.4 0.55 1 CL0022
Cotton_A_27074_CDS 481 737 476 744 PF00069.25 Pkinase Domain 6 256 264 148.0 3.1e-43 1 CL0016
Cotton_A_22817_CDS 192 250 192 251 PF00462.24 Glutaredoxin Domain 1 59 60 49.7 3.1e-13 1 CL0172
Cotton_A_22817_CDS 318 385 317 385 PF00610.21 DEP Domain 2 72 72 50.1 2.2e-13 1 CL0123
Cotton_A_22817_CDS 463 589 462 590 PF04784.14 DUF547 Family 2 122 123 111.0 3.5e-32 1 No_clan
Cotton_A_29475_CDS 111 224 110 275 PF00005.27 ABC_tran Domain 2 80 137 46.3 5.7e-12 1 CL0023
Cotton_A_29475_CDS 348 530 347 531 PF04755.12 PAP_fibrillin Family 2 197 198 118.2 4.4e-34 1 No_clan
Cotton_A_04511_CDS 9 79 9 79 PF00076.22 RRM_1 Domain 1 70 70 79.5 1.2e-22 1 CL0221
Cotton_A_04511_CDS 150 224 147 225 PF14327.6 CSTF2_hinge Family 5 78 81 63.7 1.6e-17 1 No_clan
Cotton_A_04511_CDS 479 511 477 512 PF14304.6 CSTF_C Domain 8 40 41 37.7 1.1e-09 1 No_clan
Cotton_A_18056_CDS 104 430 104 430 PF01663.22 Phosphodiest Family 1 357 357 326.3 3.2e-97 1 CL0088
Cotton_A_24119_CDS 107 287 107 287 PF00390.19 malic Domain 1 182 182 253.5 1e-75 1 CL0603
Cotton_A_24119_CDS 297 558 297 559 PF03949.15 Malic_M Domain 1 257 258 304.3 5.9e-91 1 CL0063
Cotton_A_10922_CDS 11 98 11 103 PF09177.11 Syntaxin-6_N Domain 1 94 99 72.8 2.7e-20 1 No_clan
Cotton_A_14770_CDS 47 443 47 443 PF00890.24 FAD_binding_2 Family 1 417 417 414.1 6.8e-124 1 CL0063
Cotton_A_14770_CDS 501 633 501 633 PF02910.20 Succ_DH_flav_C Domain 1 128 128 147.4 2.1e-43 1 No_clan
Cotton_A_30953_CDS 27 147 25 148 PF01417.20 ENTH Domain 3 124 125 138.2 1.4e-40 1 CL0009
Cotton_A_14215_CDS 150 349 147 369 PF00931.22 NB-ARC Domain 4 212 252 147.8 3.1e-43 1 CL0023
Cotton_A_36198_CDS 223 277 223 280 PF00226.31 DnaJ Domain 4 54 63 35.0 1.1e-08 1 CL0392
Cotton_A_11714_CDS 21 191 20 204 PF16661.5 Lactamase_B_6 Domain 2 176 193 73.8 1.2e-20 1 CL0381
Cotton_A_11714_CDS 243 361 243 361 PF10996.8 Beta-Casp Domain 1 110 110 82.5 2.4e-23 1 CL0023
Cotton_A_11714_CDS 377 437 376 437 PF07521.12 RMMBL Motif 2 62 62 60.2 1.4e-16 1 CL0398
Cotton_A_33541_CDS 268 361 263 362 PF01399.27 PCI Domain 6 104 105 64.4 1.1e-17 1 CL0123
Cotton_A_27081_CDS 53 111 52 111 PF13855.6 LRR_8 Repeat 2 61 61 33.5 2.6e-08 1 CL0022
Cotton_A_27081_CDS 386 446 386 446 PF13855.6 LRR_8 Repeat 1 61 61 32.3 6.1e-08 1 CL0022
Cotton_A_27081_CDS 679 944 675 947 PF00069.25 Pkinase Domain 5 260 264 159.8 7.8e-47 1 CL0016
Cotton_A_19280_CDS 57 108 57 108 PF08100.11 Dimerisation Domain 1 51 51 84.5 3.7e-24 1 CL0123
Cotton_A_19280_CDS 163 219 163 220 PF00891.18 Methyltransf_2 Domain 1 59 210 54.4 9.9e-15 1 CL0063
Cotton_A_19280_CDS 220 321 219 321 PF00891.18 Methyltransf_2 Domain 112 210 210 127.7 3.7e-37 1 CL0063
Cotton_A_04305_CDS 37 121 31 150 PF00651.31 BTB Domain 12 98 111 27.5 2.8e-06 1 CL0033
Cotton_A_04305_CDS 205 463 205 464 PF03000.14 NPH3 Family 1 257 258 293.3 1.7e-87 1 No_clan
Cotton_A_17634_CDS 2 41 1 41 PF01657.17 Stress-antifung Family 59 95 95 25.9 1.1e-05 1 No_clan
Cotton_A_19829_CDS 23 70 23 70 PF00249.31 Myb_DNA-binding Domain 1 46 46 59.3 3e-16 1 CL0123
Cotton_A_19829_CDS 76 119 76 121 PF00249.31 Myb_DNA-binding Domain 1 44 46 51.0 1.2e-13 1 CL0123
Cotton_A_08094_CDS 17 90 17 90 PF09341.10 Pcc1 Family 1 74 74 71.5 4.8e-20 1 No_clan
Cotton_A_07842_CDS 59 209 59 209 PF01565.23 FAD_binding_4 Domain 1 139 139 66.8 1.5e-18 1 CL0077
Cotton_A_07842_CDS 241 522 241 522 PF09265.10 Cytokin-bind Domain 1 281 281 413.3 4.9e-124 1 CL0277
Cotton_A_12086_CDS 48 291 47 291 PF00141.23 peroxidase Domain 2 229 229 198.4 1.3e-58 1 CL0617
Cotton_A_32270_CDS 28 487 28 487 PF00759.19 Glyco_hydro_9 Domain 1 411 411 476.5 9.4e-143 1 CL0059
Cotton_A_32270_CDS 534 611 534 613 PF09478.10 CBM49 Domain 1 80 81 94.0 5.3e-27 1 CL0203
Cotton_A_39015_CDS 27 112 27 116 PF01190.17 Pollen_Ole_e_I Family 1 95 99 60.2 2e-16 1 CL0287
Cotton_A_12018_CDS 17 178 17 179 PF00071.22 Ras Domain 1 161 162 222.7 1.8e-66 1 CL0023
Cotton_A_06957_CDS 173 221 171 221 PF00249.31 Myb_DNA-binding Domain 3 46 46 34.6 1.5e-08 1 CL0123
Cotton_A_35148_CDS 20 59 19 60 PF08263.12 LRRNT_2 Family 2 40 41 51.6 8.6e-14 1 No_clan
Cotton_A_35148_CDS 88 101 87 108 PF00560.33 LRR_1 Repeat 2 15 23 10.2 0.97 1 CL0022
Cotton_A_35148_CDS 111 170 110 170 PF13855.6 LRR_8 Repeat 2 61 61 30.5 2.3e-07 1 CL0022
Cotton_A_35148_CDS 184 206 184 206 PF00560.33 LRR_1 Repeat 1 23 23 10.9 0.57 1 CL0022
Cotton_A_28948_CDS 15 230 15 231 PF05755.12 REF Family 1 205 206 309.1 1.5e-92 1 No_clan
Cotton_A_15797_CDS 111 684 111 684 PF02705.16 K_trans Family 1 534 534 568.9 9.6e-171 1 CL0062
Cotton_A_01320_CDS 348 407 348 407 PF03478.18 DUF295 Domain 1 55 55 61.4 4.3e-17 1 No_clan
Cotton_A_26333_CDS 20 138 19 139 PF13456.6 RVT_3 Domain 2 123 124 66.1 2.4e-18 1 CL0219
Cotton_A_08748_CDS 47 150 47 150 PF00011.21 HSP20 Family 1 102 102 112.7 7.5e-33 1 CL0190
Cotton_A_33062_CDS 151 170 151 170 PF15365.6 PNRC Motif 1 20 20 32.7 4.5e-08 1 No_clan
Cotton_A_37762_CDS 28 247 20 253 PF01209.18 Ubie_methyltran Family 10 227 233 193.8 2.7e-57 1 CL0063
Cotton_A_04112_CDS 91 230 90 230 PF11934.8 DUF3452 Family 2 137 137 109.9 6.7e-32 1 CL0065
Cotton_A_04112_CDS 412 611 412 611 PF01858.17 RB_A Domain 1 197 197 207.2 2.1e-61 1 CL0065
Cotton_A_04112_CDS 738 865 737 865 PF01857.20 RB_B Domain 2 132 132 127.6 3e-37 1 CL0065
Cotton_A_19685_CDS 39 144 37 146 PF00168.30 C2 Domain 3 101 103 50.4 2.2e-13 1 CL0154
Cotton_A_19685_CDS 201 306 201 307 PF00168.30 C2 Domain 1 102 103 68.2 6.2e-19 1 CL0154
Cotton_A_19685_CDS 360 469 359 469 PF00168.30 C2 Domain 2 103 103 68.9 3.6e-19 1 CL0154
Cotton_A_19685_CDS 614 771 614 771 PF08372.10 PRT_C Family 1 156 156 200.6 1.2e-59 1 CL0484
Cotton_A_23539_CDS 65 639 65 662 PF05911.11 FPP Coiled-coil 1 573 867 630.8 4e-189 1 No_clan
Cotton_A_39447_CDS 108 429 108 430 PF00762.19 Ferrochelatase Domain 1 316 317 357.3 6.2e-107 1 CL0043
Cotton_A_00220_CDS 1 37 1 37 PF08392.12 FAE1_CUT1_RppA Family 254 290 290 39.5 4e-10 1 CL0046
Cotton_A_00220_CDS 56 98 27 98 PF02797.15 Chal_sti_synt_C Domain 63 105 151 26.4 5.6e-06 1 CL0046
Cotton_A_18769_CDS 188 331 187 332 PF00730.25 HhH-GPD Domain 2 107 108 72.2 4.4e-20 1 CL0198
Cotton_A_20366_CDS 35 177 32 177 PF10604.9 Polyketide_cyc2 Family 4 143 143 69.2 4.4e-19 1 CL0209
Cotton_A_22048_CDS 53 121 53 121 PF02672.15 CP12 Family 1 70 70 100.9 4.7e-29 1 No_clan
Cotton_A_17619_CDS 175 222 175 224 PF13041.6 PPR_2 Repeat 1 48 50 42.4 5.8e-11 1 CL0020
Cotton_A_17619_CDS 248 278 248 278 PF01535.20 PPR Family 1 31 31 19.6 0.00072 1 CL0020
Cotton_A_17619_CDS 280 328 280 328 PF13041.6 PPR_2 Repeat 1 49 50 52.8 3.3e-14 1 CL0020
Cotton_A_16982_CDS 37 145 36 145 PF00289.22 Biotin_carb_N Domain 2 110 110 147.4 1.9e-43 1 CL0483
Cotton_A_16982_CDS 150 358 150 360 PF02786.17 CPSase_L_D2 Domain 1 209 211 249.8 1.8e-74 1 CL0179
Cotton_A_16982_CDS 372 479 372 480 PF02785.19 Biotin_carb_C Domain 1 107 108 119.7 5.7e-35 1 CL0105
Cotton_A_16982_CDS 670 736 669 736 PF00364.22 Biotin_lipoyl Domain 2 73 73 57.3 1e-15 1 CL0105
Cotton_A_03572_CDS 3 265 3 277 PF00759.19 Glyco_hydro_9 Domain 1 260 411 292.7 6.2e-87 1 CL0059
Cotton_A_36031_CDS 26 72 24 73 PF01084.20 Ribosomal_S18 Family 3 49 52 64.7 6.7e-18 1 CL0123
Cotton_A_10891_CDS 23 169 23 188 PF00071.22 Ras Domain 1 122 162 63.6 1.6e-17 1 CL0023
Cotton_A_25032_CDS 5 269 4 269 PF01459.22 Porin_3 Family 2 270 270 246.5 3.2e-73 1 CL0193
Cotton_A_36985_CDS 81 165 69 168 PF00085.20 Thioredoxin Domain 15 100 103 34.3 1.8e-08 1 CL0172
Cotton_A_00281_CDS 88 141 88 147 PF07939.11 DUF1685 Family 1 55 60 95.0 1.6e-27 1 No_clan
Cotton_A_36249_CDS 28 82 28 82 PF04431.13 Pec_lyase_N Family 1 56 56 69.6 1.9e-19 1 No_clan
Cotton_A_36249_CDS 174 358 170 358 PF00544.19 Pec_lyase_C Domain 29 211 211 74.3 9.6e-21 1 CL0268
Cotton_A_35415_CDS 5 92 4 93 PF03083.16 MtN3_slv Family 2 86 87 64.4 7e-18 1 CL0141
Cotton_A_35415_CDS 129 211 126 212 PF03083.16 MtN3_slv Family 4 86 87 93.0 8.5e-27 1 CL0141
Cotton_A_40384_CDS 2 102 1 102 PF14111.6 DUF4283 Domain 45 145 145 95.8 1.7e-27 1 No_clan
Cotton_A_10856_CDS 28 96 13 106 PF01205.19 UPF0029 Family 21 66 105 24.3 3.1e-05 1 CL0329
Cotton_A_28146_CDS 200 228 170 229 PF00504.21 Chloroa_b-bind Family 132 160 161 35.4 1.5e-08 1 No_clan
Cotton_A_15840_CDS 123 172 123 173 PF13041.6 PPR_2 Repeat 1 48 50 30.1 3.9e-07 1 CL0020
Cotton_A_15840_CDS 227 273 226 275 PF13041.6 PPR_2 Repeat 2 48 50 45.6 5.8e-12 1 CL0020
Cotton_A_15840_CDS 302 327 301 329 PF01535.20 PPR Family 4 29 31 22.2 0.00011 1 CL0020
Cotton_A_15840_CDS 330 359 330 360 PF01535.20 PPR Family 1 30 31 28.0 1.5e-06 1 CL0020
Cotton_A_40054_CDS 53 291 38 291 PF00141.23 peroxidase Domain 12 229 229 225.5 6.6e-67 1 CL0617
Cotton_A_01228_CDS 162 334 157 335 PF03352.13 Adenine_glyco Family 4 176 177 202.5 4.3e-60 1 No_clan
Cotton_A_13414_CDS 28 109 7 110 PF02519.14 Auxin_inducible Family 17 89 90 84.4 4.7e-24 1 No_clan
Cotton_A_18298_CDS 166 498 166 499 PF01501.20 Glyco_transf_8 Family 1 255 256 292.8 2.3e-87 1 CL0110
Cotton_A_10490_CDS 746 775 745 776 PF13181.6 TPR_8 Repeat 2 31 34 22.4 9e-05 1 CL0020
Cotton_A_16478_CDS 56 197 55 197 PF04043.15 PMEI Domain 3 154 154 40.2 4.1e-10 1 No_clan
Cotton_A_11523_CDS 4 179 1 194 PF00955.21 HCO3_cotransp Family 5 174 508 135.7 2.2e-39 1 CL0062
Cotton_A_11523_CDS 195 373 182 381 PF00955.21 HCO3_cotransp Family 240 413 508 89.2 2.6e-25 1 CL0062
Cotton_A_26057_CDS 275 304 275 311 PF00076.22 RRM_1 Domain 1 30 70 24.4 1.9e-05 1 CL0221
Cotton_A_04424_CDS 41 188 40 212 PF03031.18 NIF Family 2 131 156 90.8 7.5e-26 1 CL0137
Cotton_A_04424_CDS 274 325 269 325 PF12738.7 PTCB-BRCT Family 12 63 63 24.9 1.4e-05 1 CL0459
Cotton_A_21360_CDS 204 573 204 574 PF03514.14 GRAS Family 1 373 374 424.3 3.9e-127 1 CL0063
Cotton_A_19432_CDS 140 185 140 187 PF13041.6 PPR_2 Repeat 1 46 50 41.9 8.5e-11 1 CL0020
Cotton_A_19432_CDS 214 243 213 243 PF01535.20 PPR Family 2 31 31 11.7 0.24 1 CL0020
Cotton_A_19432_CDS 245 292 245 294 PF13041.6 PPR_2 Repeat 1 48 50 44.4 1.4e-11 1 CL0020
Cotton_A_19432_CDS 316 361 315 364 PF13041.6 PPR_2 Repeat 2 47 50 40.6 2.1e-10 1 CL0020
Cotton_A_19432_CDS 386 429 385 430 PF13041.6 PPR_2 Repeat 2 45 50 54.4 1e-14 1 CL0020
Cotton_A_19432_CDS 458 484 458 485 PF01535.20 PPR Family 1 27 31 12.6 0.12 1 CL0020
Cotton_A_19432_CDS 525 553 524 554 PF01535.20 PPR Family 2 30 31 18.3 0.002 1 CL0020
Cotton_A_19432_CDS 564 589 563 589 PF01535.20 PPR Family 6 31 31 20.5 0.00039 1 CL0020
Cotton_A_08568_CDS 27 69 26 69 PF13639.6 zf-RING_2 Domain 2 44 44 49.5 3.9e-13 1 CL0229
Cotton_A_34102_CDS 38 187 37 189 PF01095.19 Pectinesterase Family 2 141 298 72.5 2.3e-20 1 CL0268
Cotton_A_19307_CDS 93 120 80 121 PF12765.7 Cohesin_HEAT Family 17 41 42 20.3 0.0005 1 CL0020
Cotton_A_37965_CDS 304 567 303 570 PF00069.25 Pkinase Domain 2 259 264 139.0 1.8e-40 1 CL0016
Cotton_A_13717_CDS 104 165 103 165 PF01485.21 IBR Domain 2 62 62 53.4 2.3e-14 1 CL0229
Cotton_A_13717_CDS 188 232 168 233 PF01485.21 IBR Domain 17 62 62 32.9 5.5e-08 1 CL0229
Cotton_A_04484_CDS 185 294 185 294 PF02770.19 Acyl-CoA_dh_M Domain 1 97 97 53.1 2.8e-14 1 No_clan
Cotton_A_04484_CDS 327 482 325 483 PF00441.24 Acyl-CoA_dh_1 Domain 6 149 150 37.1 3.4e-09 1 CL0087
Cotton_A_04484_CDS 526 658 523 662 PF01756.19 ACOX Family 5 138 180 65.8 3.5e-18 1 CL0087
Cotton_A_25656_CDS 6 40 5 40 PF05627.11 AvrRpt-cleavage Domain 3 37 37 71.7 2.2e-20 1 No_clan
Cotton_A_15199_CDS 48 137 45 137 PF00254.28 FKBP_C Domain 4 94 94 121.1 1.9e-35 1 CL0487
Cotton_A_33194_CDS 26 63 26 67 PF16209.5 PhoLip_ATPase_N Family 1 38 67 41.4 8.5e-11 1 No_clan
Cotton_A_33194_CDS 528 623 515 625 PF13246.6 Cation_ATPase Family 11 88 91 43.0 3.7e-11 1 CL0137
Cotton_A_33194_CDS 890 994 890 999 PF16212.5 PhoLip_ATPase_C Family 1 105 249 172.7 1.2e-50 1 No_clan
Cotton_A_06854_CDS 3 57 1 57 PF13855.6 LRR_8 Repeat 8 61 61 30.8 1.8e-07 1 CL0022
Cotton_A_06854_CDS 249 524 244 525 PF07714.17 Pkinase_Tyr Domain 7 258 259 72.9 2.4e-20 1 CL0016
Cotton_A_36328_CDS 81 146 80 146 PF00550.25 PP-binding Domain 2 67 67 49.6 3.8e-13 1 CL0314
Cotton_A_04949_CDS 5 229 5 229 PF14476.6 Chloroplast_duf Family 1 229 320 361.5 3.3e-108 1 No_clan
Cotton_A_08967_CDS 55 148 55 148 PF02629.19 CoA_binding Domain 1 96 96 112.8 9e-33 1 CL0063
Cotton_A_08967_CDS 210 331 210 332 PF00549.19 Ligase_CoA Domain 1 152 153 80.8 9.1e-23 1 CL0506
Cotton_A_00931_CDS 17 178 17 179 PF00071.22 Ras Domain 1 161 162 221.3 5.1e-66 1 CL0023
Cotton_A_04032_CDS 5 96 2 100 PF00153.27 Mito_carr Family 4 91 97 62.3 2.9e-17 1 No_clan
Cotton_A_04032_CDS 115 240 113 242 PF00153.27 Mito_carr Family 3 95 97 63.8 1e-17 1 No_clan
Cotton_A_04032_CDS 251 344 250 346 PF00153.27 Mito_carr Family 2 93 97 62.8 2.2e-17 1 No_clan
Cotton_A_38992_CDS 8 155 5 156 PF00407.19 Bet_v_1 Domain 4 150 151 166.0 5.4e-49 1 CL0209
Cotton_A_09338_CDS 205 369 140 386 PF00201.18 UDPGT Family 267 408 499 65.0 5.5e-18 1 CL0113
Cotton_A_19016_CDS 48 223 47 244 PF00860.20 Xan_ur_permease Family 2 167 389 60.1 1.5e-16 1 CL0062
Cotton_A_19016_CDS 248 392 231 395 PF00860.20 Xan_ur_permease Family 154 271 389 50.9 9.3e-14 1 CL0062
Cotton_A_19016_CDS 439 506 422 507 PF00860.20 Xan_ur_permease Family 321 388 389 38.2 6.6e-10 1 CL0062
Cotton_A_10131_CDS 235 329 235 330 PF00565.17 SNase Domain 1 107 108 86.3 1.7e-24 1 CL0049
Cotton_A_28156_CDS 316 513 315 530 PF02475.16 Met_10 Family 2 192 199 202.1 7.5e-60 1 CL0063
Cotton_A_28062_CDS 23 117 23 123 PF00318.20 Ribosomal_S2 Family 1 97 215 49.3 3.5e-13 1 CL0067
Cotton_A_28062_CDS 122 187 116 189 PF00318.20 Ribosomal_S2 Family 147 212 215 47.6 1.1e-12 1 CL0067
Cotton_A_29287_CDS 2 165 1 166 PF03140.15 DUF247 Family 228 396 397 162.1 2.3e-47 1 No_clan
Cotton_A_10399_CDS 115 616 115 616 PF03372.23 Exo_endo_phos Domain 1 233 233 44.4 1.4e-11 1 CL0530
Cotton_A_00967_CDS 10 65 10 66 PF00412.22 LIM Domain 1 57 58 48.9 5.5e-13 1 CL0167
Cotton_A_00967_CDS 108 163 108 164 PF00412.22 LIM Domain 1 57 58 43.7 2.4e-11 1 CL0167
Cotton_A_30300_CDS 2 61 1 61 PF13456.6 RVT_3 Domain 64 124 124 29.5 5.3e-07 1 CL0219
Cotton_A_06166_CDS 79 397 78 397 PF10250.9 O-FucT Family 2 336 336 254.0 3e-75 1 CL0113
Cotton_A_21659_CDS 72 177 72 177 PF01453.24 B_lectin Domain 1 105 105 131.1 2e-38 1 No_clan
Cotton_A_21659_CDS 209 317 209 318 PF00954.20 S_locus_glycop Domain 1 110 111 87.0 1.2e-24 1 No_clan
Cotton_A_21659_CDS 339 405 339 405 PF08276.11 PAN_2 Domain 1 67 67 74.4 5.7e-21 1 CL0168
Cotton_A_21659_CDS 500 701 499 769 PF07714.17 Pkinase_Tyr Domain 2 206 259 167.1 4.3e-49 1 CL0016
Cotton_A_04917_CDS 90 169 90 174 PF16561.5 AMPK1_CBM Family 1 80 85 111.2 2.1e-32 1 CL0369
Cotton_A_04917_CDS 203 274 202 274 PF04739.15 AMPKBI Family 2 75 75 74.0 8.7e-21 1 No_clan
Cotton_A_35371_CDS 58 165 55 167 PF13426.7 PAS_9 Domain 4 99 104 63.3 2.1e-17 1 CL0183
Cotton_A_35371_CDS 214 252 213 259 PF00646.33 F-box Domain 3 40 48 19.8 0.00053 1 CL0271
Cotton_A_35371_CDS 308 358 307 358 PF13418.6 Kelch_4 Repeat 2 49 49 42.2 6.1e-11 1 CL0186
Cotton_A_35371_CDS 373 419 372 420 PF13415.6 Kelch_3 Domain 4 48 49 43.8 2.1e-11 1 CL0186
Cotton_A_35371_CDS 422 473 422 473 PF13415.6 Kelch_3 Domain 1 49 49 36.0 6.1e-09 1 CL0186
Cotton_A_35371_CDS 532 579 531 579 PF07646.15 Kelch_2 Repeat 2 49 49 25.4 9.7e-06 1 CL0186
Cotton_A_00730_CDS 155 208 148 209 PF00571.28 CBS Domain 4 56 57 19.8 0.00079 1 No_clan
Cotton_A_00730_CDS 342 381 335 385 PF00571.28 CBS Domain 13 52 57 17.2 0.0052 1 No_clan
Cotton_A_07805_CDS 346 689 345 689 PF03016.15 Exostosin Family 2 300 300 231.6 1.2e-68 1 No_clan
Cotton_A_24125_CDS 7 42 6 48 PF14555.6 UBA_4 Domain 2 37 43 34.0 1.9e-08 1 CL0214
Cotton_A_20071_CDS 75 359 48 360 PF00999.21 Na_H_Exchanger Family 99 380 381 123.3 9.9e-36 1 CL0064
Cotton_A_27712_CDS 26 123 22 125 PF13962.6 PGG Domain 6 108 116 80.3 8.8e-23 1 No_clan
Cotton_A_19478_CDS 51 135 49 138 PF00855.17 PWWP Domain 3 93 96 42.5 6.4e-11 1 CL0049
Cotton_A_07941_CDS 56 401 56 416 PF13968.6 DUF4220 Family 1 328 347 301.4 9.8e-90 1 No_clan
Cotton_A_07941_CDS 640 691 637 691 PF04578.13 DUF594 Family 4 55 55 73.4 7.9e-21 1 No_clan
Cotton_A_25084_CDS 114 152 114 152 PF00805.22 Pentapeptide Repeat 1 39 40 46.5 2e-12 1 CL0505
Cotton_A_21448_CDS 28 496 27 506 PF00067.22 p450 Domain 2 451 463 215.5 1.2e-63 1 No_clan
Cotton_A_12117_CDS 180 266 179 267 PF13813.6 MBOAT_2 Family 2 82 83 64.8 6.4e-18 1 CL0517
Cotton_A_40922_CDS 91 301 91 306 PF07002.16 Copine Family 1 212 218 248.1 6.4e-74 1 CL0128
Cotton_A_40922_CDS 357 397 355 398 PF13920.6 zf-C3HC4_3 Domain 3 49 50 37.6 1.5e-09 1 CL0229
Cotton_A_33960_CDS 35 450 35 451 PF00854.21 PTR2 Family 1 394 395 270.4 2.2e-80 1 CL0015
Cotton_A_24457_CDS 1 93 1 93 PF07777.11 MFMR Family 1 97 97 120.2 4e-35 1 No_clan
Cotton_A_24457_CDS 110 231 110 231 PF16596.5 MFMR_assoc Disordered 1 134 134 95.4 3.8e-27 1 No_clan
Cotton_A_24457_CDS 248 310 248 311 PF00170.21 bZIP_1 Family 1 63 64 74.7 4.6e-21 1 CL0018
Cotton_A_36513_CDS 210 240 206 257 PF12031.8 BAF250_C Family 6 36 256 22.0 8.1e-05 1 CL0020
Cotton_A_05391_CDS 661 768 658 780 PF07766.13 LETM1 Family 4 106 268 52.2 5.4e-14 1 No_clan
Cotton_A_11641_CDS 53 105 52 105 PF14416.6 PMR5N Domain 2 53 53 75.5 3e-21 1 No_clan
Cotton_A_11641_CDS 106 393 106 395 PF13839.6 PC-Esterase Family 1 281 283 301.4 7.9e-90 1 CL0264
Cotton_A_28475_CDS 269 304 268 311 PF00569.17 ZZ Domain 2 37 45 36.3 3.5e-09 1 CL0006
Cotton_A_28475_CDS 365 466 365 466 PF16158.5 N_BRCA1_IG Domain 1 102 102 99.8 1.2e-28 1 CL0159
Cotton_A_35915_CDS 21 87 20 89 PF00076.22 RRM_1 Domain 2 68 70 32.5 5.5e-08 1 CL0221
Cotton_A_32022_CDS 266 428 247 441 PF00201.18 UDPGT Family 276 409 499 71.2 7.6e-20 1 CL0113
Cotton_A_40868_CDS 283 387 264 391 PF01544.18 CorA Family 186 290 292 32.5 5.5e-08 1 No_clan
Cotton_A_21985_CDS 4 31 1 31 PF08263.12 LRRNT_2 Family 15 41 41 22.6 9.4e-05 1 No_clan
Cotton_A_21985_CDS 313 372 312 372 PF13855.6 LRR_8 Repeat 2 61 61 33.1 3.4e-08 1 CL0022
Cotton_A_21985_CDS 385 403 385 410 PF00560.33 LRR_1 Repeat 1 19 23 10.5 0.77 1 CL0022
Cotton_A_21985_CDS 459 479 458 480 PF00560.33 LRR_1 Repeat 2 22 23 14.6 0.035 1 CL0022
Cotton_A_21985_CDS 629 912 627 917 PF00069.25 Pkinase Domain 3 257 264 147.8 3.7e-43 1 CL0016
Cotton_A_19130_CDS 10 344 9 345 PF03214.13 RGP Family 2 341 342 599.8 1.5e-180 1 CL0110
Cotton_A_04469_CDS 10 61 9 61 PF00010.26 HLH Domain 2 53 53 37.2 2.1e-09 1 No_clan
Cotton_A_02910_CDS 123 272 123 272 PF13365.6 Trypsin_2 Domain 1 150 150 110.0 1.8e-31 1 CL0124
Cotton_A_34935_CDS 65 214 63 214 PF00190.22 Cupin_1 Domain 3 151 151 159.3 4.9e-47 1 CL0029
Cotton_A_37031_CDS 152 195 149 196 PF02234.19 CDI Family 4 48 49 62.7 2.7e-17 1 No_clan
Cotton_A_02063_CDS 10 190 9 190 PF05562.11 WCOR413 Family 2 183 183 287.3 4.9e-86 1 No_clan
Cotton_A_26449_CDS 47 71 46 72 PF13912.6 zf-C2H2_6 Domain 2 26 27 22.8 6.7e-05 1 CL0361
Cotton_A_34319_CDS 44 68 42 68 PF00642.24 zf-CCCH Family 3 27 27 35.6 5.9e-09 1 CL0537
Cotton_A_34319_CDS 90 114 89 114 PF00642.24 zf-CCCH Family 3 27 27 35.6 5.8e-09 1 CL0537
Cotton_A_34319_CDS 135 159 134 160 PF00642.24 zf-CCCH Family 2 26 27 36.7 2.6e-09 1 CL0537
Cotton_A_34319_CDS 297 321 295 321 PF00642.24 zf-CCCH Family 3 27 27 35.8 5.2e-09 1 CL0537
Cotton_A_34319_CDS 343 366 341 367 PF00642.24 zf-CCCH Family 3 26 27 29.7 4.3e-07 1 CL0537
Cotton_A_39861_CDS 4 57 2 64 PF03004.14 Transposase_24 Family 3 55 142 29.8 5.5e-07 1 No_clan
Cotton_A_12937_CDS 80 134 73 137 PF00294.24 PfkB Family 239 294 302 35.5 6.3e-09 1 CL0118
Cotton_A_07308_CDS 70 177 68 177 PF00289.22 Biotin_carb_N Domain 3 110 110 134.7 1.8e-39 1 CL0483
Cotton_A_07308_CDS 204 368 182 371 PF02786.17 CPSase_L_D2 Domain 42 207 211 218.0 9.7e-65 1 CL0179
Cotton_A_29070_CDS 7 123 7 123 PF14845.6 Glycohydro_20b2 Domain 1 137 137 59.2 6.6e-16 1 CL0546
Cotton_A_29070_CDS 148 451 148 452 PF00728.22 Glyco_hydro_20 Domain 1 352 354 286.9 2.6e-85 1 CL0058
Cotton_A_11344_CDS 4 64 4 69 PF13456.6 RVT_3 Domain 1 62 124 30.8 2.1e-07 1 CL0219
Cotton_A_09958_CDS 51 201 50 202 PF12638.7 Staygreen Domain 2 147 148 191.4 7.1e-57 1 No_clan
Cotton_A_21530_CDS 29 350 29 351 PF12819.7 Malectin_like Domain 1 335 336 265.4 7.2e-79 1 CL0202
Cotton_A_27816_CDS 118 172 117 173 PF00046.29 Homeodomain Domain 2 56 57 61.9 3.8e-17 1 CL0123
Cotton_A_10704_CDS 20 119 18 120 PF13947.6 GUB_WAK_bind Domain 3 105 106 59.2 5.7e-16 1 No_clan
Cotton_A_31134_CDS 441 673 440 674 PF04842.12 DUF639 Family 2 229 231 216.9 2.5e-64 1 CL0484
Cotton_A_19780_CDS 47 190 46 190 PF03018.14 Dirigent Family 2 148 148 190.0 1.9e-56 1 CL0650
Cotton_A_33440_CDS 27 67 23 69 PF00646.33 F-box Domain 6 46 48 23.8 3e-05 1 CL0271
Cotton_A_33015_CDS 88 468 88 470 PF00916.20 Sulfate_transp Family 1 378 380 421.2 3e-126 1 CL0062
Cotton_A_33015_CDS 521 640 521 640 PF01740.21 STAS Domain 1 117 117 86.7 8.5e-25 1 CL0502
Cotton_A_07018_CDS 214 310 207 311 PF13426.7 PAS_9 Domain 7 103 104 72.2 3.4e-20 1 CL0183
Cotton_A_07018_CDS 491 583 482 586 PF13426.7 PAS_9 Domain 9 101 104 74.5 6.9e-21 1 CL0183
Cotton_A_07018_CDS 671 964 668 964 PF00069.25 Pkinase Domain 4 264 264 190.3 3.9e-56 1 CL0016
Cotton_A_20971_CDS 257 299 256 299 PF13639.6 zf-RING_2 Domain 2 44 44 53.5 2.2e-14 1 CL0229
Cotton_A_13897_CDS 17 108 17 110 PF00428.19 Ribosomal_60s Family 1 83 88 68.8 4.6e-19 1 No_clan
Cotton_A_08218_CDS 278 484 278 484 PF01397.21 Terpene_synth Domain 1 192 192 177.5 2.3e-52 1 No_clan
Cotton_A_08218_CDS 528 685 528 692 PF03936.16 Terpene_synth_C Domain 1 152 267 65.9 3.5e-18 1 CL0613
Cotton_A_22515_CDS 40 161 39 162 PF00307.31 CH Domain 2 108 109 57.9 9.9e-16 1 CL0188
Cotton_A_22515_CDS 406 719 406 720 PF00225.23 Kinesin Domain 1 332 333 341.6 3.9e-102 1 CL0023
Cotton_A_01927_CDS 19 468 18 478 PF00067.22 p450 Domain 3 443 463 212.2 1.2e-62 1 No_clan
Cotton_A_08248_CDS 191 313 190 315 PF00651.31 BTB Domain 2 109 111 79.5 2.1e-22 1 CL0033
Cotton_A_30873_CDS 9 49 9 66 PF01370.21 Epimerase Family 1 43 241 22.9 4.9e-05 1 CL0063
Cotton_A_30873_CDS 64 210 57 217 PF01370.21 Epimerase Family 87 232 241 39.7 3.5e-10 1 CL0063
Cotton_A_00731_CDS 20 180 17 180 PF03248.13 Rer1 Family 4 171 171 252.7 1.5e-75 1 No_clan
Cotton_A_29180_CDS 19 56 17 57 PF08263.12 LRRNT_2 Family 3 40 41 36.9 3.4e-09 1 No_clan
Cotton_A_37368_CDS 3 150 2 152 PF00407.19 Bet_v_1 Domain 2 149 151 129.3 1.1e-37 1 CL0209
Cotton_A_25385_CDS 1 121 1 122 PF00485.18 PRK Domain 74 196 197 175.6 9.5e-52 1 CL0023
Cotton_A_30110_CDS 232 507 196 508 PF01501.20 Glyco_transf_8 Family 10 255 256 274.1 1.2e-81 1 CL0110
Cotton_A_15835_CDS 69 208 66 210 PF10604.9 Polyketide_cyc2 Family 4 141 143 64.9 9e-18 1 CL0209
Cotton_A_33920_CDS 55 148 55 148 PF01190.17 Pollen_Ole_e_I Family 1 99 99 60.1 2e-16 1 CL0287
Cotton_A_21789_CDS 8 192 7 192 PF00025.21 Arf Domain 2 175 175 217.7 7.1e-65 1 CL0023
Cotton_A_34668_CDS 174 314 174 314 PF02338.19 OTU Family 1 127 127 114.5 4.3e-33 1 CL0125
Cotton_A_38024_CDS 50 364 48 364 PF03016.15 Exostosin Family 3 300 300 265.6 5.1e-79 1 No_clan
Cotton_A_19325_CDS 27 111 26 113 PF00248.21 Aldo_ket_red Domain 2 93 294 35.3 7e-09 1 No_clan
Cotton_A_26575_CDS 236 306 236 308 PF04564.15 U-box Domain 1 71 73 75.4 3e-21 1 CL0229
Cotton_A_26575_CDS 576 613 574 614 PF00514.23 Arm Repeat 3 40 41 40.3 2e-10 1 CL0020
Cotton_A_26575_CDS 658 695 657 696 PF00514.23 Arm Repeat 3 40 41 24.9 1.4e-05 1 CL0020
Cotton_A_01001_CDS 293 445 292 445 PF13359.6 DDE_Tnp_4 Domain 2 158 158 122.5 1.2e-35 1 CL0219
Cotton_A_28410_CDS 2 101 1 106 PF01154.17 HMG_CoA_synt_N Domain 2 101 174 127.8 3.9e-37 1 CL0046
Cotton_A_28410_CDS 118 193 109 193 PF01154.17 HMG_CoA_synt_N Domain 99 174 174 127.9 3.5e-37 1 CL0046
Cotton_A_28410_CDS 194 468 194 468 PF08540.10 HMG_CoA_synt_C Domain 1 280 280 378.7 2e-113 1 CL0046
Cotton_A_21564_CDS 264 436 90 442 PF00201.18 UDPGT Family 257 418 499 90.1 1.4e-25 1 CL0113
Cotton_A_07208_CDS 3 117 1 133 PF00790.19 VHS Domain 8 122 141 109.8 9.6e-32 1 CL0009
Cotton_A_07208_CDS 193 267 192 268 PF03127.14 GAT Domain 2 76 77 66.2 2.4e-18 1 No_clan
Cotton_A_05610_CDS 87 195 86 196 PF01058.22 Oxidored_q6 Family 3 130 131 77.8 6.5e-22 1 No_clan
Cotton_A_13209_CDS 38 473 37 492 PF00067.22 p450 Domain 2 445 463 260.8 2.1e-77 1 No_clan
Cotton_A_22383_CDS 8 74 8 75 PF00076.22 RRM_1 Domain 1 69 70 63.6 1.1e-17 1 CL0221
Cotton_A_22383_CDS 111 173 111 177 PF00076.22 RRM_1 Domain 1 66 70 40.9 1.3e-10 1 CL0221
Cotton_A_28309_CDS 8 122 8 122 PF00168.30 C2 Domain 1 103 103 52.5 4.8e-14 1 CL0154
Cotton_A_28309_CDS 321 359 321 359 PF00614.22 PLDc Family 1 28 28 42.1 5.6e-11 1 CL0479
Cotton_A_28309_CDS 652 678 651 678 PF00614.22 PLDc Family 2 28 28 27.8 1.9e-06 1 CL0479
Cotton_A_28309_CDS 724 795 723 795 PF12357.8 PLD_C Family 2 72 72 97.5 3.1e-28 1 No_clan
Cotton_A_19282_CDS 139 234 139 234 PF06749.12 DUF1218 Family 1 91 91 82.7 2e-23 1 No_clan
Cotton_A_12346_CDS 17 119 5 121 PF01920.20 Prefoldin_2 Coiled-coil 2 104 106 72.7 2e-20 1 CL0200
Cotton_A_29580_CDS 117 210 117 222 PF02362.21 B3 Family 1 89 101 97.8 2.6e-28 1 CL0405
Cotton_A_40355_CDS 8 195 1 196 PF01490.18 Aa_trans Family 64 242 409 78.4 4.2e-22 1 CL0062
Cotton_A_23314_CDS 225 467 225 467 PF00069.25 Pkinase Domain 1 264 264 170.1 5.9e-50 1 CL0016
Cotton_A_34476_CDS 45 105 44 107 PF13499.6 EF-hand_7 Domain 2 68 71 55.2 7.1e-15 1 CL0220
Cotton_A_34476_CDS 118 180 117 181 PF13499.6 EF-hand_7 Domain 2 70 71 45.3 8.7e-12 1 CL0220
Cotton_A_01227_CDS 1 430 1 433 PF02458.15 Transferase Family 1 431 434 347.8 7.6e-104 1 CL0149
Cotton_A_20495_CDS 1 112 1 112 PF05670.13 NFACT-R_1 Domain 1 109 109 148.9 7.3e-44 1 CL0684
Cotton_A_23470_CDS 38 70 27 71 PF06404.12 PSK Family 55 89 90 44.6 2.3e-11 1 No_clan
Cotton_A_12919_CDS 26 123 26 129 PF00933.21 Glyco_hydro_3 Domain 1 100 319 39.4 4.6e-10 1 CL0058
Cotton_A_02728_CDS 11 161 2 179 PF00860.20 Xan_ur_permease Family 214 360 389 88.5 3.5e-25 1 CL0062
Cotton_A_24346_CDS 32 79 32 80 PF08100.11 Dimerisation Domain 1 50 51 51.8 5.8e-14 1 CL0123
Cotton_A_24346_CDS 132 310 132 323 PF00891.18 Methyltransf_2 Domain 1 181 210 142.3 1.2e-41 1 CL0063
Cotton_A_02574_CDS 41 236 40 236 PF00349.21 Hexokinase_1 Domain 2 199 199 215.5 6.3e-64 1 CL0108
Cotton_A_02574_CDS 243 491 242 492 PF03727.16 Hexokinase_2 Domain 2 239 240 270.4 1.2e-80 1 CL0108
Cotton_A_38042_CDS 61 397 60 401 PF01490.18 Aa_trans Family 2 354 409 186.6 5.9e-55 1 CL0062
Cotton_A_25566_CDS 134 182 134 182 PF01344.25 Kelch_1 Repeat 1 46 46 47.3 1.1e-12 1 CL0186
Cotton_A_25566_CDS 185 233 184 239 PF01344.25 Kelch_1 Repeat 2 39 46 23.4 3.3e-05 1 CL0186
Cotton_A_02886_CDS 1 151 1 153 PF04802.15 SMK-1 Family 9 155 191 131.8 2.6e-38 1 No_clan
Cotton_A_04982_CDS 112 255 12 257 PF01086.17 Clathrin_lg_ch Family 107 228 230 45.9 7.1e-12 1 No_clan
Cotton_A_32841_CDS 29 94 29 102 PF13456.6 RVT_3 Domain 1 67 124 25.1 1.2e-05 1 CL0219
Cotton_A_07005_CDS 135 254 131 279 PF00293.28 NUDIX Domain 7 89 131 22.5 9.3e-05 1 CL0261
Cotton_A_38419_CDS 7 188 1 189 PF00924.18 MS_channel Family 26 205 206 81.5 5.9e-23 1 No_clan
Cotton_A_14683_CDS 55 486 55 502 PF00067.22 p450 Domain 1 439 463 180.5 4.9e-53 1 No_clan
Cotton_A_26291_CDS 437 582 435 592 PF00069.25 Pkinase Domain 3 153 264 87.0 1.3e-24 1 CL0016
Cotton_A_26291_CDS 767 904 751 904 PF00069.25 Pkinase Domain 157 264 264 66.0 3.4e-18 1 CL0016
Cotton_A_38977_CDS 2 205 1 263 PF00069.25 Pkinase Domain 7 204 264 151.3 3.1e-44 1 CL0016
Cotton_A_10953_CDS 336 649 336 650 PF01501.20 Glyco_transf_8 Family 1 255 256 315.7 2.4e-94 1 CL0110
Cotton_A_18925_CDS 51 366 51 366 PF00251.20 Glyco_hydro_32N Domain 1 305 305 338.7 3.6e-101 1 CL0143
Cotton_A_18925_CDS 369 562 369 562 PF08244.12 Glyco_hydro_32C Domain 1 158 158 101.3 5e-29 1 CL0004
Cotton_A_32793_CDS 72 136 68 213 PF05705.14 DUF829 Domain 76 131 241 30.7 2.8e-07 1 CL0028
Cotton_A_28412_CDS 10 231 3 232 PF00931.22 NB-ARC Domain 21 251 252 150.9 3.5e-44 1 CL0023
Cotton_A_31398_CDS 669 736 668 736 PF00076.22 RRM_1 Domain 2 69 70 48.2 7e-13 1 CL0221
Cotton_A_31398_CDS 828 843 827 843 PF05391.11 Lsm_interact Motif 4 19 19 29.1 4.6e-07 1 No_clan
Cotton_A_34311_CDS 89 416 87 419 PF11955.8 PORR Family 3 322 326 368.7 2.1e-110 1 No_clan
Cotton_A_07010_CDS 36 96 18 99 PF15511.6 CENP-T_C Domain 19 79 108 34.4 1.8e-08 1 CL0012
Cotton_A_01442_CDS 45 160 45 160 PF02466.19 Tim17 Family 1 111 111 106.3 1e-30 1 No_clan
Cotton_A_17454_CDS 29 122 28 123 PF01657.17 Stress-antifung Family 2 94 95 76.7 1.6e-21 1 No_clan
Cotton_A_17454_CDS 143 232 136 233 PF01657.17 Stress-antifung Family 10 94 95 54.9 1e-14 1 No_clan
Cotton_A_21755_CDS 29 65 27 65 PF00400.32 WD40 Repeat 3 38 38 28.1 2.6e-06 1 CL0186
Cotton_A_21755_CDS 308 345 306 345 PF00400.32 WD40 Repeat 5 38 38 15.8 0.019 1 CL0186
Cotton_A_21755_CDS 350 386 349 387 PF00400.32 WD40 Repeat 2 37 38 13.1 0.14 1 CL0186
Cotton_A_09168_CDS 63 199 57 203 PF10604.9 Polyketide_cyc2 Family 8 139 143 41.6 1.4e-10 1 CL0209
Cotton_A_10409_CDS 38 156 38 157 PF00917.26 MATH Domain 1 111 113 47.6 1.6e-12 1 CL0389
Cotton_A_18585_CDS 163 393 160 394 PF00931.22 NB-ARC Domain 4 251 252 145.7 1.3e-42 1 CL0023
Cotton_A_18585_CDS 531 588 530 589 PF13855.6 LRR_8 Repeat 2 59 61 30.1 3e-07 1 CL0022
Cotton_A_07349_CDS 742 783 740 783 PF13639.6 zf-RING_2 Domain 3 44 44 40.8 2e-10 1 CL0229
Cotton_A_22504_CDS 26 88 26 88 PF00226.31 DnaJ Domain 1 63 63 100.1 5.6e-29 1 CL0392
Cotton_A_22504_CDS 134 347 134 347 PF01556.18 DnaJ_C Domain 1 148 148 121.0 4.2e-35 1 No_clan
Cotton_A_36662_CDS 68 117 67 118 PF00847.20 AP2 Domain 2 53 54 52.6 4e-14 1 CL0081
Cotton_A_39117_CDS 7 298 7 299 PF05368.13 NmrA Family 1 232 233 291.4 4.6e-87 1 CL0063
Cotton_A_08956_CDS 21 274 20 274 PF00069.25 Pkinase Domain 2 264 264 244.7 1e-72 1 CL0016
Cotton_A_36121_CDS 40 366 17 366 PF00225.23 Kinesin Domain 33 333 333 344.4 5.5e-103 1 CL0023
Cotton_A_18951_CDS 42 353 41 354 PF00657.22 Lipase_GDSL Family 2 199 200 48.8 8.1e-13 1 CL0264
Cotton_A_37401_CDS 27 64 16 86 PF02823.16 ATP-synt_DE_N Domain 14 51 80 37.0 2.3e-09 1 No_clan
Cotton_A_40754_CDS 291 348 290 349 PF12742.7 Gryzun-like Domain 2 55 56 21.9 0.00013 1 CL0212
Cotton_A_26344_CDS 20 83 17 83 PF03108.15 DBD_Tnp_Mut Family 4 67 67 79.0 1.9e-22 1 CL0274
Cotton_A_26344_CDS 222 312 214 312 PF10551.9 MULE Domain 9 96 96 54.6 1.1e-14 1 CL0219
Cotton_A_26344_CDS 461 494 444 495 PF04434.17 SWIM Domain 9 39 40 35.0 7.7e-09 1 No_clan
Cotton_A_20501_CDS 10 116 9 117 PF01315.22 Ald_Xan_dh_C Domain 2 109 110 98.8 2.3e-28 1 No_clan
Cotton_A_20501_CDS 139 681 133 681 PF02738.18 Ald_Xan_dh_C2 Family 8 550 550 508.9 1.5e-152 1 No_clan
Cotton_A_19072_CDS 53 102 53 102 PF13041.6 PPR_2 Repeat 1 50 50 43.7 2.2e-11 1 CL0020
Cotton_A_19072_CDS 126 155 126 156 PF01535.20 PPR Family 1 30 31 11.9 0.21 1 CL0020
Cotton_A_19072_CDS 191 222 190 223 PF12854.7 PPR_1 Repeat 2 33 34 34.6 1.1e-08 1 CL0020
Cotton_A_19072_CDS 261 293 260 293 PF12854.7 PPR_1 Repeat 2 34 34 39.9 2.4e-10 1 CL0020
Cotton_A_19072_CDS 299 348 299 348 PF13041.6 PPR_2 Repeat 1 50 50 55.9 3.6e-15 1 CL0020
Cotton_A_19072_CDS 373 399 372 402 PF01535.20 PPR Family 2 28 31 12.1 0.18 1 CL0020
Cotton_A_19072_CDS 440 467 438 468 PF01535.20 PPR Family 3 30 31 10.2 0.74 1 CL0020
Cotton_A_19072_CDS 474 498 473 502 PF01535.20 PPR Family 2 26 31 9.5 1.2 1 CL0020
Cotton_A_19072_CDS 505 552 505 554 PF13041.6 PPR_2 Repeat 1 48 50 61.4 6.7e-17 1 CL0020
Cotton_A_19072_CDS 590 639 590 639 PF13041.6 PPR_2 Repeat 1 50 50 59.0 3.8e-16 1 CL0020
Cotton_A_05079_CDS 11 150 11 151 PF05903.14 Peptidase_C97 Domain 1 150 151 154.8 1.4e-45 1 CL0125
Cotton_A_08776_CDS 92 190 89 191 PF01416.20 PseudoU_synth_1 Domain 4 107 108 28.0 2.3e-06 1 CL0649
Cotton_A_08776_CDS 230 337 230 337 PF01416.20 PseudoU_synth_1 Domain 1 108 108 92.2 2.6e-26 1 CL0649
Cotton_A_40940_CDS 7 198 7 199 PF13472.6 Lipase_GDSL_2 Domain 1 178 179 100.5 1.4e-28 1 CL0264
Cotton_A_26220_CDS 31 75 30 77 PF00956.18 NAP Family 3 47 270 30.3 2.3e-07 1 No_clan
Cotton_A_26220_CDS 76 222 75 223 PF00956.18 NAP Family 87 269 270 103.7 9.6e-30 1 No_clan
Cotton_A_02768_CDS 92 408 92 409 PF10250.9 O-FucT Family 1 335 336 242.0 1.3e-71 1 CL0113
Cotton_A_05827_CDS 43 214 1 224 PF07279.11 DUF1442 Family 23 186 218 58.6 5.1e-16 1 CL0063
Cotton_A_29156_CDS 39 463 39 475 PF00067.22 p450 Domain 1 448 463 214.7 2.1e-63 1 No_clan
Cotton_A_16737_CDS 17 189 16 191 PF01595.20 DUF21 Domain 1 174 176 129.2 1.3e-37 1 No_clan
Cotton_A_14324_CDS 134 242 128 243 PF01873.17 eIF-5_eIF-2B Family 8 116 117 134.6 1.4e-39 1 CL0123
Cotton_A_26849_CDS 31 135 30 136 PF13947.6 GUB_WAK_bind Domain 2 105 106 58.5 9.2e-16 1 No_clan
Cotton_A_08122_CDS 86 131 58 132 PF13334.6 DUF4094 Family 41 87 88 40.9 2.1e-10 1 No_clan
Cotton_A_08122_CDS 171 367 171 368 PF01762.21 Galactosyl_T Family 1 194 195 163.7 4.3e-48 1 CL0110
Cotton_A_17031_CDS 266 334 265 337 PF04564.15 U-box Domain 2 70 73 70.3 1.2e-19 1 CL0229
Cotton_A_27597_CDS 115 230 114 230 PF03479.15 DUF296 Domain 2 107 107 91.4 4.2e-26 1 CL0615
Cotton_A_37890_CDS 81 125 81 125 PF02671.21 PAH Repeat 1 45 45 52.0 5.8e-14 1 No_clan
Cotton_A_37890_CDS 166 209 165 209 PF02671.21 PAH Repeat 2 45 45 68.9 2.9e-19 1 No_clan
Cotton_A_37890_CDS 365 406 362 406 PF02671.21 PAH Repeat 4 45 45 41.0 1.6e-10 1 No_clan
Cotton_A_37890_CDS 474 566 474 568 PF08295.12 Sin3_corepress Domain 1 95 98 119.1 6.4e-35 1 No_clan
Cotton_A_37890_CDS 1086 1334 1086 1334 PF16879.5 Sin3a_C Family 1 286 286 187.4 4.5e-55 1 No_clan
Cotton_A_14843_CDS 21 258 21 259 PF12697.7 Abhydrolase_6 Domain 1 219 220 53.4 5.2e-14 1 CL0028
Cotton_A_23707_CDS 48 59 48 60 PF02178.19 AT_hook Motif 1 12 13 17.5 0.0024 1 No_clan
Cotton_A_10451_CDS 82 145 80 146 PF01424.22 R3H Domain 3 59 60 43.0 3.4e-11 1 No_clan
Cotton_A_10451_CDS 173 221 170 222 PF12752.7 SUZ Domain 4 56 57 46.4 5e-12 1 No_clan
Cotton_A_30531_CDS 69 100 68 100 PF06200.14 tify Domain 3 34 34 39.7 2.2e-10 1 No_clan
Cotton_A_30531_CDS 133 175 133 176 PF06203.14 CCT Motif 1 43 44 58.9 3.7e-16 1 CL0281
Cotton_A_30531_CDS 198 234 198 235 PF00320.27 GATA Domain 1 35 36 53.1 1.7e-14 1 CL0167
Cotton_A_37120_CDS 5 125 2 149 PF00082.22 Peptidase_S8 Domain 56 174 298 41.3 1.1e-10 1 No_clan
Cotton_A_13021_CDS 7 252 7 253 PF06813.13 Nodulin-like Family 1 249 250 286.8 1.4e-85 1 CL0015
Cotton_A_22387_CDS 8 72 7 72 PF00808.23 CBFD_NFYB_HMF Domain 2 65 65 89.1 1.7e-25 1 CL0012
Cotton_A_35615_CDS 96 185 96 199 PF02727.16 Cu_amine_oxidN2 Domain 1 69 87 22.1 0.00013 1 CL0047
Cotton_A_35615_CDS 221 324 221 325 PF02728.16 Cu_amine_oxidN3 Domain 1 100 101 109.7 7.5e-32 1 CL0047
Cotton_A_35615_CDS 351 773 350 773 PF01179.20 Cu_amine_oxid Domain 2 410 410 494.9 1.7e-148 1 CL0103
Cotton_A_06804_CDS 307 363 307 363 PF03106.15 WRKY Domain 1 59 59 86.0 1.5e-24 1 CL0274
Cotton_A_06804_CDS 520 577 520 577 PF03106.15 WRKY Domain 1 59 59 85.9 1.6e-24 1 CL0274
Cotton_A_31898_CDS 24 58 23 66 PF08263.12 LRRNT_2 Family 2 33 41 19.8 0.00073 1 No_clan
Cotton_A_31898_CDS 102 140 94 141 PF13855.6 LRR_8 Repeat 22 60 61 30.8 1.7e-07 1 CL0022
Cotton_A_31898_CDS 154 212 153 212 PF13855.6 LRR_8 Repeat 2 61 61 34.3 1.5e-08 1 CL0022
Cotton_A_31898_CDS 296 331 292 332 PF13855.6 LRR_8 Repeat 25 60 61 27.8 1.6e-06 1 CL0022
Cotton_A_36673_CDS 109 138 109 148 PF00786.28 PBD Domain 1 31 59 21.9 0.00017 1 No_clan
Cotton_A_36673_CDS 172 306 172 312 PF00620.27 RhoGAP Domain 1 145 152 70.8 1e-19 1 CL0409
Cotton_A_38804_CDS 36 125 33 130 PF00651.31 BTB Domain 6 97 111 36.6 4.1e-09 1 CL0033
Cotton_A_38804_CDS 215 298 215 299 PF03000.14 NPH3 Family 1 86 258 64.9 8.5e-18 1 No_clan
Cotton_A_38804_CDS 298 325 297 325 PF03000.14 NPH3 Family 231 258 258 34.7 1.4e-08 1 No_clan
Cotton_A_37706_CDS 37 456 37 476 PF00067.22 p450 Domain 1 439 463 216.1 8e-64 1 No_clan
Cotton_A_22326_CDS 159 523 157 523 PF03514.14 GRAS Family 3 374 374 135.6 2e-39 1 CL0063
Cotton_A_27017_CDS 11 53 8 55 PF00643.24 zf-B_box Domain 4 40 42 31.7 1.2e-07 1 No_clan
Cotton_A_27017_CDS 361 403 361 404 PF06203.14 CCT Motif 1 43 44 63.3 1.5e-17 1 CL0281
Cotton_A_16257_CDS 1 598 1 601 PF03552.14 Cellulose_synt Family 123 719 722 1097.5 0 1 CL0110
Cotton_A_25285_CDS 32 103 31 103 PF14223.6 Retrotran_gag_2 Family 2 70 138 57.2 1.3e-15 1 CL0523
Cotton_A_28683_CDS 197 548 197 549 PF05701.11 WEMBL Family 1 346 562 443.4 1.3e-132 1 No_clan
Cotton_A_28683_CDS 548 733 547 733 PF05701.11 WEMBL Family 370 562 562 202.8 1e-59 1 No_clan
Cotton_A_03533_CDS 54 99 54 99 PF00249.31 Myb_DNA-binding Domain 1 46 46 52.4 4.4e-14 1 CL0123
Cotton_A_30454_CDS 50 360 48 362 PF03016.15 Exostosin Family 3 298 300 265.3 6.2e-79 1 No_clan
Cotton_A_14978_CDS 4 257 4 258 PF00069.25 Pkinase Domain 1 263 264 218.4 1.1e-64 1 CL0016
Cotton_A_26735_CDS 257 374 246 417 PF00201.18 UDPGT Family 276 379 499 75.2 4.6e-21 1 CL0113
Cotton_A_18946_CDS 114 270 109 271 PF13460.6 NAD_binding_10 Domain 10 182 184 44.7 1.4e-11 1 CL0063
Cotton_A_26178_CDS 704 898 702 903 PF02854.19 MIF4G Family 3 207 212 146.8 6.8e-43 1 CL0020
Cotton_A_26178_CDS 1018 1159 1018 1159 PF04050.14 Upf2 Family 1 136 136 118.1 4.6e-34 1 CL0020
Cotton_A_02095_CDS 609 672 609 672 PF02042.15 RWP-RK Family 1 49 49 78.6 2.4e-22 1 No_clan
Cotton_A_02095_CDS 846 927 845 928 PF00564.24 PB1 Domain 2 83 84 70.5 8.3e-20 1 CL0072
Cotton_A_16400_CDS 347 407 346 409 PF13432.6 TPR_16 Family 3 66 68 32.1 1.4e-07 1 CL0020
Cotton_A_16400_CDS 413 471 413 475 PF13432.6 TPR_16 Family 1 62 68 36.9 4.2e-09 1 CL0020
Cotton_A_19886_CDS 492 519 492 519 PF00614.22 PLDc Family 1 28 28 34.0 2.1e-08 1 CL0479
Cotton_A_19886_CDS 921 944 919 944 PF00614.22 PLDc Family 5 28 28 26.7 4.3e-06 1 CL0479
Cotton_A_15541_CDS 105 132 103 133 PF01535.20 PPR Family 3 30 31 18.8 0.0014 1 CL0020
Cotton_A_15541_CDS 134 164 134 164 PF01535.20 PPR Family 1 31 31 19.7 0.00069 1 CL0020
Cotton_A_15541_CDS 207 234 207 234 PF01535.20 PPR Family 4 31 31 15.7 0.013 1 CL0020
Cotton_A_15541_CDS 235 263 235 265 PF01535.20 PPR Family 1 29 31 18.8 0.0013 1 CL0020
Cotton_A_15541_CDS 309 332 308 335 PF01535.20 PPR Family 5 28 31 9.7 1.1 1 CL0020
Cotton_A_15541_CDS 333 374 333 378 PF13041.6 PPR_2 Repeat 1 42 50 37.5 2e-09 1 CL0020
Cotton_A_15541_CDS 457 505 435 526 PF13812.6 PPR_3 Repeat 1 49 63 19.5 0.00077 1 CL0020
Cotton_A_15541_CDS 536 583 535 584 PF13041.6 PPR_2 Repeat 2 49 50 40.6 2.2e-10 1 CL0020
Cotton_A_15541_CDS 611 634 608 636 PF01535.20 PPR Family 4 27 31 10.5 0.6 1 CL0020
Cotton_A_15541_CDS 637 683 636 684 PF13041.6 PPR_2 Repeat 2 48 50 35.7 7.1e-09 1 CL0020
Cotton_A_15541_CDS 714 736 712 737 PF01535.20 PPR Family 5 27 31 12.2 0.17 1 CL0020
Cotton_A_28776_CDS 159 206 157 235 PF00561.20 Abhydrolase_1 Domain 3 48 257 27.7 1.9e-06 1 CL0028
Cotton_A_12088_CDS 1 43 1 51 PF03094.15 Mlo Family 320 362 479 40.7 1e-10 1 No_clan
Cotton_A_37830_CDS 50 260 46 267 PF02259.23 FAT Family 120 335 346 179.4 1.1e-52 1 CL0020
Cotton_A_39849_CDS 15 121 11 121 PF00069.25 Pkinase Domain 148 264 264 82.7 2.6e-23 1 CL0016
Cotton_A_40405_CDS 75 233 75 234 PF00484.19 Pro_CA Domain 1 155 156 149.0 1.3e-43 1 No_clan
Cotton_A_03574_CDS 30 143 28 144 PF07732.15 Cu-oxidase_3 Domain 3 118 119 133.8 2.7e-39 1 CL0026
Cotton_A_03574_CDS 156 299 154 300 PF00394.22 Cu-oxidase Domain 3 158 159 140.7 4.3e-41 1 CL0026
Cotton_A_03574_CDS 384 520 383 522 PF07731.14 Cu-oxidase_2 Domain 2 135 137 98.0 3.5e-28 1 CL0026
Cotton_A_37524_CDS 6 344 5 344 PF13243.6 SQHop_cyclase_C Domain 2 319 319 161.8 2e-47 1 CL0059
Cotton_A_15156_CDS 4 226 1 230 PF12146.8 Hydrolase_4 Family 17 235 239 206.6 3.3e-61 1 CL0028
Cotton_A_28872_CDS 80 351 78 352 PF07714.17 Pkinase_Tyr Domain 3 258 259 216.3 4.3e-64 1 CL0016
Cotton_A_28624_CDS 87 137 86 138 PF00847.20 AP2 Domain 2 53 54 48.8 5.8e-13 1 CL0081
Cotton_A_20575_CDS 35 248 14 248 PF00481.21 PP2C Family 31 258 258 184.3 3.2e-54 1 CL0238
Cotton_A_05231_CDS 31 117 29 120 PF00153.27 Mito_carr Family 5 94 97 62.2 3.2e-17 1 No_clan
Cotton_A_05231_CDS 127 231 124 232 PF00153.27 Mito_carr Family 5 96 97 64.9 4.7e-18 1 No_clan
Cotton_A_05231_CDS 234 324 232 327 PF00153.27 Mito_carr Family 3 93 97 66.7 1.3e-18 1 No_clan
Cotton_A_07301_CDS 32 109 12 113 PF03171.20 2OG-FeII_Oxy Domain 19 96 101 72.1 4.3e-20 1 CL0029
Cotton_A_01710_CDS 297 892 297 892 PF00443.29 UCH Family 1 257 257 256.6 2.5e-76 1 CL0125
Cotton_A_22861_CDS 8 75 8 76 PF00076.22 RRM_1 Domain 1 69 70 52.0 4.5e-14 1 CL0221
Cotton_A_22861_CDS 112 178 112 183 PF00076.22 RRM_1 Domain 1 67 70 58.2 5.1e-16 1 CL0221
Cotton_A_08214_CDS 173 233 173 234 PF04844.13 Ovate Family 1 57 58 85.7 1.5e-24 1 No_clan
Cotton_A_32914_CDS 1 112 1 113 PF00179.26 UQ_con Domain 27 139 140 153.5 2.7e-45 1 CL0208
Cotton_A_16712_CDS 1 169 1 169 PF05695.12 DUF825 Family 1318 1486 1486 350.5 1.5e-104 1 No_clan
Cotton_A_02652_CDS 238 606 237 608 PF03081.15 Exo70 Family 2 374 376 416.9 7.2e-125 1 CL0295
Cotton_A_12649_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 55.5 4.7e-15 1 CL0123
Cotton_A_12649_CDS 67 109 67 112 PF00249.31 Myb_DNA-binding Domain 1 43 46 52.3 4.8e-14 1 CL0123
Cotton_A_35300_CDS 77 432 75 432 PF05147.13 LANC_like Family 4 352 352 278.9 4e-83 1 CL0059
Cotton_A_26635_CDS 129 378 122 382 PF13249.6 SQHop_cyclase_N Domain 59 287 291 100.7 7.7e-29 1 CL0059
Cotton_A_26635_CDS 392 729 391 730 PF13243.6 SQHop_cyclase_C Domain 2 318 319 185.2 1.6e-54 1 CL0059
Cotton_A_30462_CDS 17 68 13 71 PF00403.26 HMA Domain 6 55 62 43.7 2.7e-11 1 No_clan
Cotton_A_18232_CDS 7 65 6 66 PF03931.15 Skp1_POZ Domain 2 62 63 107.2 3.5e-31 1 CL0033
Cotton_A_18232_CDS 109 156 109 156 PF01466.19 Skp1 Domain 1 48 48 102.1 1.3e-29 1 No_clan
Cotton_A_24400_CDS 72 336 71 337 PF08423.11 Rad51 Domain 2 254 255 165.4 1.4e-48 1 CL0023
Cotton_A_08550_CDS 23 118 23 126 PF00318.20 Ribosomal_S2 Family 1 98 215 49.3 3.4e-13 1 CL0067
Cotton_A_08550_CDS 122 184 117 186 PF00318.20 Ribosomal_S2 Family 147 212 215 36.6 2.7e-09 1 CL0067
Cotton_A_22721_CDS 120 202 118 203 PF00111.27 Fer2 Domain 3 77 78 38.7 7.1e-10 1 CL0486
Cotton_A_20645_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 41.7 9.6e-11 1 CL0123
Cotton_A_20645_CDS 67 110 67 112 PF00249.31 Myb_DNA-binding Domain 1 44 46 53.9 1.5e-14 1 CL0123
Cotton_A_33757_CDS 17 85 7 113 PF14551.6 MCM_N Domain 6 86 104 43.6 3.5e-11 1 No_clan
Cotton_A_33757_CDS 105 235 102 236 PF17207.3 MCM_OB Domain 3 125 126 105.1 2.3e-30 1 CL0021
Cotton_A_33757_CDS 273 491 272 495 PF00493.23 MCM Domain 2 220 224 312.7 9.2e-94 1 CL0023
Cotton_A_33757_CDS 513 596 512 599 PF17855.1 MCM_lid Domain 2 84 87 91.6 3e-26 1 CL0671
Cotton_A_05904_CDS 35 162 34 163 PF08240.12 ADH_N Domain 2 108 109 87.3 5.8e-25 1 CL0296
Cotton_A_05904_CDS 235 305 233 318 PF00107.26 ADH_zinc_N Family 50 119 130 36.5 4.1e-09 1 CL0063
Cotton_A_03788_CDS 214 286 214 286 PF04564.15 U-box Domain 1 73 73 92.8 1.1e-26 1 CL0229
Cotton_A_17106_CDS 166 411 165 411 PF01167.18 Tub Domain 2 241 241 160.7 5e-47 1 CL0395
Cotton_A_09098_CDS 54 95 53 98 PF00628.29 PHD Domain 2 49 52 31.0 1.7e-07 1 CL0390
Cotton_A_09098_CDS 102 155 100 171 PF00385.24 Chromo Domain 3 42 54 37.0 2.4e-09 1 CL0049
Cotton_A_09098_CDS 193 242 192 243 PF00385.24 Chromo Domain 2 53 54 48.9 4.5e-13 1 CL0049
Cotton_A_09098_CDS 307 585 294 586 PF00176.23 SNF2_N Family 58 349 350 218.7 8.9e-65 1 CL0023
Cotton_A_09098_CDS 609 722 608 722 PF00271.31 Helicase_C Family 2 111 111 63.8 1.6e-17 1 CL0023
Cotton_A_09098_CDS 845 905 843 905 PF06465.13 DUF1087 Domain 3 62 62 80.9 4.9e-23 1 No_clan
Cotton_A_09098_CDS 933 1066 931 1067 PF06461.11 DUF1086 Domain 3 137 138 195.9 2.4e-58 1 No_clan
Cotton_A_08009_CDS 152 277 149 279 PF01529.20 DHHC Family 5 132 134 131.3 2.3e-38 1 No_clan
Cotton_A_27545_CDS 130 185 10 186 PF14510.6 ABC_trans_N Domain 30 80 81 40.9 2.3e-10 1 No_clan
Cotton_A_27545_CDS 212 393 211 395 PF00005.27 ABC_tran Domain 2 135 137 55.5 8.3e-15 1 CL0023
Cotton_A_27545_CDS 547 759 546 759 PF01061.24 ABC2_membrane Family 2 210 210 135.7 1.4e-39 1 CL0181
Cotton_A_27545_CDS 764 825 764 825 PF08370.11 PDR_assoc Family 1 65 65 92.2 1.3e-26 1 No_clan
Cotton_A_27545_CDS 916 1061 916 1061 PF00005.27 ABC_tran Domain 1 137 137 72.2 5.7e-20 1 CL0023
Cotton_A_27545_CDS 1206 1418 1206 1420 PF01061.24 ABC2_membrane Family 1 208 210 189.2 5.8e-56 1 CL0181
Cotton_A_27796_CDS 33 327 33 329 PF16363.5 GDP_Man_Dehyd Domain 1 330 332 189.4 1.1e-55 1 CL0063
Cotton_A_15401_CDS 4 64 3 64 PF01200.18 Ribosomal_S28e Family 2 64 64 110.4 3.1e-32 1 CL0021
Cotton_A_22174_CDS 295 392 295 392 PF04749.17 PLAC8 Family 1 99 99 57.6 2e-15 1 No_clan
Cotton_A_05676_CDS 390 592 390 592 PF08161.12 NUC173 Domain 1 204 204 205.9 5.1e-61 1 No_clan
Cotton_A_13514_CDS 44 116 11 116 PF14368.6 LTP_2 Family 23 97 97 41.5 1.1e-10 1 CL0482
Cotton_A_28131_CDS 41 216 41 228 PF06136.13 DUF966 Family 1 190 377 213.8 6.3e-63 1 No_clan
Cotton_A_28131_CDS 208 276 201 279 PF06136.13 DUF966 Family 218 292 377 27.7 2.1e-06 1 No_clan
Cotton_A_36452_CDS 16 84 16 85 PF00306.27 ATP-synt_ab_C Domain 1 69 126 101.0 5.8e-29 1 No_clan
Cotton_A_32576_CDS 1 25 1 26 PF01535.20 PPR Family 6 30 31 11.8 0.24 1 CL0020
Cotton_A_32576_CDS 28 56 27 57 PF01535.20 PPR Family 2 30 31 10.7 0.51 1 CL0020
Cotton_A_32576_CDS 129 173 127 175 PF13041.6 PPR_2 Repeat 4 48 50 32.8 5.7e-08 1 CL0020
Cotton_A_32576_CDS 224 269 224 271 PF13041.6 PPR_2 Repeat 1 46 50 45.1 8.4e-12 1 CL0020
Cotton_A_32576_CDS 297 317 295 322 PF01535.20 PPR Family 4 24 31 14.5 0.032 1 CL0020
Cotton_A_32576_CDS 397 421 397 422 PF01535.20 PPR Family 4 28 31 13.6 0.06 1 CL0020
Cotton_A_16486_CDS 129 263 128 263 PF16486.5 ArgoN Domain 2 138 138 113.7 9.6e-33 1 No_clan
Cotton_A_16486_CDS 273 322 273 323 PF08699.10 ArgoL1 Domain 1 51 52 70.2 8.3e-20 1 No_clan
Cotton_A_16486_CDS 341 454 328 456 PF02170.22 PAZ Domain 12 135 137 92.0 2.7e-26 1 CL0638
Cotton_A_16486_CDS 465 511 465 511 PF16488.5 ArgoL2 Family 1 47 47 58.3 7.2e-16 1 No_clan
Cotton_A_16486_CDS 522 599 521 601 PF16487.5 ArgoMid Domain 2 82 84 51.0 1.3e-13 1 No_clan
Cotton_A_16486_CDS 613 931 612 933 PF02171.17 Piwi Family 2 300 302 384.7 2.8e-115 1 CL0219
Cotton_A_20866_CDS 51 82 38 83 PF06404.12 PSK Family 56 89 90 52.5 7.3e-14 1 No_clan
Cotton_A_36588_CDS 34 73 33 73 PF03911.16 Sec61_beta Family 2 41 41 66.4 1.6e-18 1 No_clan
Cotton_A_30640_CDS 300 715 300 715 PF07990.12 NABP Domain 1 388 388 488.4 2.2e-146 1 No_clan
Cotton_A_30640_CDS 717 747 716 750 PF00806.19 PUF Repeat 2 32 35 27.2 1.9e-06 1 CL0020
Cotton_A_30640_CDS 760 783 753 785 PF00806.19 PUF Repeat 9 32 35 25.4 7.1e-06 1 CL0020
Cotton_A_30640_CDS 788 818 788 822 PF00806.19 PUF Repeat 1 31 35 22.0 8.5e-05 1 CL0020
Cotton_A_30640_CDS 834 858 832 858 PF00806.19 PUF Repeat 11 35 35 27.8 1.3e-06 1 CL0020
Cotton_A_30640_CDS 861 891 860 892 PF00806.19 PUF Repeat 2 32 35 34.7 8.1e-09 1 CL0020
Cotton_A_30640_CDS 898 927 897 931 PF00806.19 PUF Repeat 2 31 35 28.8 6.2e-07 1 CL0020
Cotton_A_30640_CDS 934 966 933 967 PF00806.19 PUF Repeat 2 34 35 24.8 1.1e-05 1 CL0020
Cotton_A_12926_CDS 21 96 20 96 PF11493.8 TSP9 Family 1 81 81 100.9 4.5e-29 1 No_clan
Cotton_A_03691_CDS 30 284 27 284 PF00069.25 Pkinase Domain 5 264 264 175.9 1e-51 1 CL0016
Cotton_A_23065_CDS 102 534 102 535 PF00854.21 PTR2 Family 1 394 395 313.2 2.2e-93 1 CL0015
Cotton_A_12285_CDS 7 177 6 177 PF13967.6 RSN1_TM Family 2 156 156 160.8 2e-47 1 No_clan
Cotton_A_12285_CDS 221 380 219 380 PF14703.6 PHM7_cyt Domain 4 176 176 146.2 1.1e-42 1 CL0221
Cotton_A_12285_CDS 391 663 391 663 PF02714.15 RSN1_7TM Family 1 274 274 277.2 1.3e-82 1 CL0416
Cotton_A_10727_CDS 32 103 31 103 PF14223.6 Retrotran_gag_2 Family 2 70 138 52.5 3.8e-14 1 CL0523
Cotton_A_05528_CDS 53 310 47 313 PF01566.18 Nramp Family 47 306 358 161.2 3.2e-47 1 CL0062
Cotton_A_25992_CDS 1 26 1 26 PF01535.20 PPR Family 6 31 31 17.9 0.0026 1 CL0020
Cotton_A_25992_CDS 96 142 95 144 PF13041.6 PPR_2 Repeat 2 48 50 46.1 4e-12 1 CL0020
Cotton_A_25992_CDS 196 243 196 245 PF13041.6 PPR_2 Repeat 1 48 50 30.3 3.5e-07 1 CL0020
Cotton_A_25992_CDS 300 325 300 330 PF01535.20 PPR Family 1 26 31 19.8 0.00065 1 CL0020
Cotton_A_25992_CDS 397 435 397 444 PF13041.6 PPR_2 Repeat 1 39 50 31.4 1.5e-07 1 CL0020
Cotton_A_25992_CDS 472 498 469 499 PF01535.20 PPR Family 4 30 31 14.4 0.034 1 CL0020
Cotton_A_25992_CDS 500 528 500 528 PF01535.20 PPR Family 1 29 31 28.0 1.5e-06 1 CL0020
Cotton_A_25992_CDS 572 596 570 598 PF01535.20 PPR Family 3 27 31 11.4 0.31 1 CL0020
Cotton_A_25992_CDS 642 666 637 666 PF01535.20 PPR Family 7 31 31 11.3 0.34 1 CL0020
Cotton_A_19391_CDS 190 243 190 244 PF00010.26 HLH Domain 1 52 53 33.1 3.9e-08 1 No_clan
Cotton_A_15357_CDS 335 449 334 452 PF07986.12 TBCC Domain 2 116 120 107.4 3.6e-31 1 CL0391
Cotton_A_39006_CDS 2 69 1 70 PF02182.17 SAD_SRA Domain 83 156 157 51.0 1.3e-13 1 CL0178
Cotton_A_13128_CDS 231 456 229 456 PF01458.17 UPF0051 Family 3 218 218 202.3 7.6e-60 1 No_clan
Cotton_A_18497_CDS 82 185 82 191 PF00436.25 SSB Domain 1 99 104 79.5 1.6e-22 1 CL0021
Cotton_A_01573_CDS 18 139 17 139 PF00903.25 Glyoxalase Domain 2 128 128 35.6 9e-09 1 CL0104
Cotton_A_25722_CDS 121 170 120 171 PF00847.20 AP2 Domain 2 53 54 52.5 4.3e-14 1 CL0081
Cotton_A_08933_CDS 87 178 87 184 PF01453.24 B_lectin Domain 1 94 105 86.6 1.4e-24 1 No_clan
Cotton_A_08933_CDS 238 305 222 306 PF00954.20 S_locus_glycop Domain 43 110 111 61.0 1.3e-16 1 No_clan
Cotton_A_08933_CDS 329 388 319 389 PF08276.11 PAN_2 Domain 7 66 67 35.3 9.1e-09 1 CL0168
Cotton_A_08933_CDS 414 504 412 514 PF13947.6 GUB_WAK_bind Domain 3 92 106 30.5 4.7e-07 1 No_clan
Cotton_A_08933_CDS 679 945 676 947 PF07714.17 Pkinase_Tyr Domain 4 257 259 163.5 5.4e-48 1 CL0016
Cotton_A_06840_CDS 12 88 11 95 PF03143.17 GTP_EFTU_D3 Domain 2 80 112 68.0 8e-19 1 No_clan
Cotton_A_26985_CDS 147 277 143 284 PF08294.11 TIM21 Domain 6 138 145 86.8 1.2e-24 1 CL0455
Cotton_A_24118_CDS 13 179 12 185 PF00106.25 adh_short Domain 2 141 195 85.7 2.7e-24 1 CL0063
Cotton_A_05046_CDS 3 289 3 289 PF13266.6 DUF4057 Family 1 299 299 477.9 1.6e-143 1 No_clan
Cotton_A_22793_CDS 67 148 67 166 PF14226.6 DIOX_N Family 2 84 118 40.7 3.4e-10 1 CL0029
Cotton_A_15079_CDS 187 341 181 342 PF13883.6 Pyrid_oxidase_2 Domain 11 169 170 53.2 3.3e-14 1 CL0336
Cotton_A_03098_CDS 11 95 9 131 PF18052.1 Rx_N Domain 3 84 93 75.7 2.5e-21 1 No_clan
Cotton_A_03098_CDS 170 414 169 424 PF00931.22 NB-ARC Domain 2 251 252 160.1 5.5e-47 1 CL0023
Cotton_A_31776_CDS 146 182 104 196 PF01764.25 Lipase_3 Family 56 92 142 31.7 1.2e-07 1 CL0028
Cotton_A_09742_CDS 68 129 68 129 PF00226.31 DnaJ Domain 1 63 63 56.1 3e-15 1 CL0392
Cotton_A_09742_CDS 450 656 447 657 PF11926.8 DUF3444 Family 4 211 212 220.3 2.1e-65 1 No_clan
Cotton_A_23278_CDS 84 184 83 185 PF00085.20 Thioredoxin Domain 2 102 103 84.0 6.2e-24 1 CL0172
Cotton_A_30817_CDS 36 306 35 306 PF00067.22 p450 Domain 2 278 463 116.2 1.6e-33 1 No_clan
Cotton_A_38418_CDS 19 77 16 77 PF01920.20 Prefoldin_2 Coiled-coil 26 84 106 31.1 1.7e-07 1 CL0200
Cotton_A_30121_CDS 40 440 40 446 PF00118.24 Cpn60_TCP1 Family 1 398 491 421.1 5.5e-126 1 No_clan
Cotton_A_25269_CDS 102 144 102 144 PF03790.13 KNOX1 Family 1 43 43 84.2 3.7e-24 1 No_clan
Cotton_A_25269_CDS 157 201 155 202 PF03791.13 KNOX2 Family 3 47 48 79.2 1.1e-22 1 No_clan
Cotton_A_09727_CDS 30 129 29 130 PF14523.6 Syntaxin_2 Domain 2 100 101 102.7 1.1e-29 1 CL0445
Cotton_A_09727_CDS 215 252 215 261 PF05739.19 SNARE Family 1 38 53 37.8 1.3e-09 1 No_clan
Cotton_A_01579_CDS 10 57 10 57 PF00319.18 SRF-TF Domain 1 48 48 84.8 2e-24 1 No_clan
Cotton_A_01579_CDS 82 165 75 169 PF01486.17 K-box Family 6 89 93 73.3 1.4e-20 1 No_clan
Cotton_A_23026_CDS 28 336 28 337 PF00657.22 Lipase_GDSL Family 1 199 200 49.3 5.9e-13 1 CL0264
Cotton_A_09297_CDS 140 210 140 210 PF00076.22 RRM_1 Domain 1 70 70 67.9 5.1e-19 1 CL0221
Cotton_A_36535_CDS 80 486 77 487 PF00450.22 Peptidase_S10 Domain 6 418 419 467.1 6.9e-140 1 CL0028
Cotton_A_26701_CDS 228 504 227 506 PF00069.25 Pkinase Domain 2 260 264 151.0 3.9e-44 1 CL0016
Cotton_A_24154_CDS 52 197 45 197 PF00005.27 ABC_tran Domain 8 137 137 85.0 6.4e-24 1 CL0023
Cotton_A_24154_CDS 348 560 348 560 PF01061.24 ABC2_membrane Family 1 210 210 120.2 7.7e-35 1 CL0181
Cotton_A_38639_CDS 316 395 316 409 PF01432.20 Peptidase_M3 Family 1 83 458 54.0 1.7e-14 1 CL0126
Cotton_A_31018_CDS 1 723 1 726 PF11145.8 DUF2921 Family 175 889 894 482.3 2.6e-144 1 No_clan
Cotton_A_12858_CDS 22 140 22 140 PF00967.17 Barwin Domain 1 119 119 213.4 5.1e-64 1 CL0199
Cotton_A_12964_CDS 30 63 29 70 PF12937.7 F-box-like Domain 7 41 48 34.7 1.2e-08 1 CL0271
Cotton_A_11125_CDS 39 105 39 106 PF12041.8 DELLA Domain 1 68 69 106.5 4.7e-31 1 No_clan
Cotton_A_11125_CDS 165 530 165 530 PF03514.14 GRAS Family 1 374 374 426.8 6.7e-128 1 CL0063
Cotton_A_09759_CDS 136 422 136 422 PF00069.25 Pkinase Domain 1 264 264 209.7 4.8e-62 1 CL0016
Cotton_A_16569_CDS 215 541 215 542 PF00225.23 Kinesin Domain 1 332 333 311.4 6.1e-93 1 CL0023
Cotton_A_09335_CDS 93 236 92 241 PF10358.9 NT-C2 Family 2 139 146 61.9 5.4e-17 1 CL0154
Cotton_A_09335_CDS 1079 1124 1078 1125 PF01476.20 LysM Domain 2 43 44 39.5 4.3e-10 1 CL0187
Cotton_A_37300_CDS 212 235 192 235 PF00400.32 WD40 Repeat 15 38 38 15.0 0.034 1 CL0186
Cotton_A_37300_CDS 292 325 285 325 PF00400.32 WD40 Repeat 8 37 38 14.6 0.047 1 CL0186
Cotton_A_35756_CDS 16 61 14 61 PF00643.24 zf-B_box Domain 3 42 42 32.8 5.6e-08 1 No_clan
Cotton_A_35756_CDS 363 405 363 406 PF06203.14 CCT Motif 1 43 44 63.7 1.2e-17 1 CL0281
Cotton_A_26125_CDS 201 282 201 304 PF12066.8 DUF3546 Family 1 82 110 82.0 3.2e-23 1 No_clan
Cotton_A_26125_CDS 437 633 437 635 PF04959.13 ARS2 Family 1 193 195 150.4 7.9e-44 1 CL0361
Cotton_A_29444_CDS 80 458 80 458 PF03372.23 Exo_endo_phos Domain 1 233 233 51.3 1.1e-13 1 CL0530
Cotton_A_18033_CDS 1006 1036 995 1036 PF00400.32 WD40 Repeat 9 38 38 12.4 0.24 1 CL0186
Cotton_A_18033_CDS 1046 1079 1042 1080 PF00400.32 WD40 Repeat 5 37 38 22.1 0.0002 1 CL0186
Cotton_A_38548_CDS 43 149 43 149 PF05938.11 Self-incomp_S1 Family 1 104 104 92.3 2.5e-26 1 No_clan
Cotton_A_25311_CDS 31 157 9 158 PF00179.26 UQ_con Domain 13 139 140 137.9 1.7e-40 1 CL0208
Cotton_A_17657_CDS 26 255 26 296 PF00561.20 Abhydrolase_1 Domain 1 222 257 76.9 1.9e-21 1 CL0028
Cotton_A_23114_CDS 47 228 47 228 PF14215.6 bHLH-MYC_N Family 1 175 175 190.9 2.1e-56 1 CL0161
Cotton_A_23114_CDS 385 430 383 431 PF00010.26 HLH Domain 4 52 53 41.8 7.8e-11 1 No_clan
Cotton_A_36610_CDS 1 181 1 182 PF13087.6 AAA_12 Domain 26 198 199 164.5 2.2e-48 1 CL0023
Cotton_A_34307_CDS 29 126 29 130 PF09229.11 Aha1_N Domain 1 94 137 75.7 3.9e-21 1 CL0648
Cotton_A_37489_CDS 53 351 53 355 PF00248.21 Aldo_ket_red Domain 1 290 294 201.9 1.2e-59 1 No_clan
Cotton_A_16101_CDS 15 301 12 302 PF03151.16 TPT Family 4 289 290 170.2 6.2e-50 1 CL0184
Cotton_A_31641_CDS 90 501 90 501 PF01603.20 B56 Family 1 415 415 645.5 3.5e-194 1 CL0020
Cotton_A_04454_CDS 93 151 92 154 PF04727.13 ELMO_CED12 Family 2 55 177 25.8 9.9e-06 1 No_clan
Cotton_A_04454_CDS 159 197 150 199 PF04727.13 ELMO_CED12 Family 136 174 177 27.6 2.7e-06 1 No_clan
Cotton_A_10447_CDS 33 441 33 441 PF00067.22 p450 Domain 1 406 463 307.9 1.1e-91 1 No_clan
Cotton_A_11683_CDS 24 115 24 116 PF03501.15 S10_plectin Domain 1 92 93 146.9 1.3e-43 1 CL0123
Cotton_A_20581_CDS 159 236 133 237 PF14380.6 WAK_assoc Domain 28 103 104 43.3 4.9e-11 1 No_clan
Cotton_A_28417_CDS 2 85 1 86 PF01486.17 K-box Family 9 92 93 80.4 8e-23 1 No_clan
Cotton_A_00862_CDS 40 83 37 105 PF01423.22 LSM Domain 4 47 67 48.0 7.5e-13 1 CL0527
Cotton_A_02473_CDS 56 114 56 116 PF13921.6 Myb_DNA-bind_6 Domain 1 58 60 58.4 6.1e-16 1 CL0123
Cotton_A_21281_CDS 108 321 108 322 PF07859.13 Abhydrolase_3 Domain 1 210 211 195.9 7.2e-58 1 CL0028
Cotton_A_15783_CDS 32 316 32 316 PF07651.16 ANTH Domain 1 277 277 322.8 1.3e-96 1 CL0009
Cotton_A_27707_CDS 137 193 137 194 PF03106.15 WRKY Domain 1 58 59 86.6 9.5e-25 1 CL0274
Cotton_A_33912_CDS 219 456 217 456 PF03372.23 Exo_endo_phos Domain 4 233 233 30.8 2e-07 1 CL0530
Cotton_A_17190_CDS 169 593 154 593 PF01425.21 Amidase Family 20 451 451 283.4 3.5e-84 1 No_clan
Cotton_A_01310_CDS 167 212 165 214 PF13041.6 PPR_2 Repeat 3 48 50 31.5 1.5e-07 1 CL0020
Cotton_A_01310_CDS 270 317 270 319 PF13041.6 PPR_2 Repeat 1 48 50 42.1 7.5e-11 1 CL0020
Cotton_A_01310_CDS 345 373 343 373 PF01535.20 PPR Family 3 31 31 28.0 1.6e-06 1 CL0020
Cotton_A_01310_CDS 375 423 375 423 PF13041.6 PPR_2 Repeat 1 49 50 58.9 4.1e-16 1 CL0020
Cotton_A_01310_CDS 434 477 433 479 PF13812.6 PPR_3 Repeat 2 45 63 18.6 0.0015 1 CL0020
Cotton_A_20057_CDS 5 104 4 114 PF00635.26 Motile_Sperm Domain 2 96 109 34.4 1.6e-08 1 CL0556
Cotton_A_20057_CDS 164 231 140 236 PF12796.7 Ank_2 Repeat 23 78 83 35.9 8.4e-09 1 CL0465
Cotton_A_20057_CDS 241 292 239 292 PF13637.6 Ank_4 Repeat 3 55 55 44.8 1.3e-11 1 CL0465
Cotton_A_20057_CDS 304 358 299 363 PF12796.7 Ank_2 Repeat 24 72 83 33.7 4e-08 1 CL0465
Cotton_A_20057_CDS 364 455 364 456 PF12796.7 Ank_2 Repeat 1 82 83 61.5 8.8e-17 1 CL0465
Cotton_A_25669_CDS 4 410 3 411 PF02458.15 Transferase Family 2 433 434 266.8 2.8e-79 1 CL0149
Cotton_A_35993_CDS 124 411 94 411 PF00225.23 Kinesin Domain 36 333 333 307.9 7e-92 1 CL0023
Cotton_A_24745_CDS 61 159 61 181 PF14226.6 DIOX_N Family 1 98 118 61.3 1.4e-16 1 CL0029
Cotton_A_24745_CDS 216 309 213 311 PF03171.20 2OG-FeII_Oxy Domain 5 99 101 81.9 3.9e-23 1 CL0029
Cotton_A_17001_CDS 60 116 59 117 PF02701.15 zf-Dof Family 2 58 59 111.7 1.3e-32 1 No_clan
Cotton_A_12557_CDS 64 184 64 184 PF13456.6 RVT_3 Domain 1 124 124 77.6 6.9e-22 1 CL0219
Cotton_A_13899_CDS 90 379 63 382 PF00389.30 2-Hacid_dh Domain 33 129 134 57.0 1.6e-15 1 CL0325
Cotton_A_13899_CDS 163 352 162 352 PF02826.19 2-Hacid_dh_C Domain 2 178 178 139.7 6e-41 1 CL0063
Cotton_A_31248_CDS 116 403 115 404 PF08392.12 FAE1_CUT1_RppA Family 2 289 290 418.4 1.4e-125 1 CL0046
Cotton_A_31248_CDS 430 510 427 511 PF08541.10 ACP_syn_III_C Domain 12 89 90 49.2 4.4e-13 1 CL0046
Cotton_A_31092_CDS 27 92 26 92 PF00227.26 Proteasome Domain 123 190 190 55.5 4.9e-15 1 CL0052
Cotton_A_35039_CDS 71 134 70 202 PF03168.13 LEA_2 Domain 2 66 101 26.2 8.7e-06 1 CL0159
Cotton_A_18767_CDS 65 117 64 118 PF00646.33 F-box Domain 3 47 48 40.7 1.4e-10 1 CL0271
Cotton_A_18767_CDS 128 418 128 418 PF01167.18 Tub Domain 1 241 241 279.6 2.3e-83 1 CL0395
Cotton_A_27969_CDS 55 163 55 165 PF14226.6 DIOX_N Family 1 116 118 81.4 8.2e-23 1 CL0029
Cotton_A_27969_CDS 209 313 206 313 PF03171.20 2OG-FeII_Oxy Domain 4 101 101 90.4 8.7e-26 1 CL0029
Cotton_A_36921_CDS 7 117 2 117 PF00407.19 Bet_v_1 Domain 44 151 151 57.8 1.2e-15 1 CL0209
Cotton_A_15359_CDS 256 387 242 425 PF00201.18 UDPGT Family 268 381 499 74.7 6.4e-21 1 CL0113
Cotton_A_04403_CDS 599 647 599 647 PF02042.15 RWP-RK Family 1 49 49 89.9 7e-26 1 No_clan
Cotton_A_04403_CDS 890 970 889 971 PF00564.24 PB1 Domain 2 83 84 58.1 6.4e-16 1 CL0072
Cotton_A_01375_CDS 165 279 165 281 PF03479.15 DUF296 Domain 1 105 107 95.0 3.2e-27 1 CL0615
Cotton_A_32114_CDS 149 168 149 168 PF15365.6 PNRC Motif 1 20 20 34.3 1.4e-08 1 No_clan
Cotton_A_36036_CDS 15 62 15 62 PF00249.31 Myb_DNA-binding Domain 1 46 46 53.8 1.6e-14 1 CL0123
Cotton_A_36036_CDS 68 111 68 113 PF00249.31 Myb_DNA-binding Domain 1 44 46 58.2 6.7e-16 1 CL0123
Cotton_A_25348_CDS 58 132 57 133 PF03061.22 4HBT Domain 2 78 79 34.7 1.7e-08 1 CL0050
Cotton_A_19076_CDS 1 212 1 213 PF03321.13 GH3 Family 331 526 527 230.9 3.1e-68 1 CL0378
Cotton_A_21579_CDS 79 215 79 217 PF01565.23 FAD_binding_4 Domain 1 136 139 92.0 2.6e-26 1 CL0077
Cotton_A_37748_CDS 38 190 37 191 PF03018.14 Dirigent Family 2 147 148 139.1 9e-41 1 CL0650
Cotton_A_26725_CDS 1 170 1 170 PF06472.15 ABC_membrane_2 Family 100 269 269 200.0 4.7e-59 1 CL0241
Cotton_A_26725_CDS 275 420 274 420 PF00005.27 ABC_tran Domain 2 137 137 70.5 2e-19 1 CL0023
Cotton_A_29971_CDS 126 567 126 567 PF12899.7 Glyco_hydro_100 Domain 1 435 435 708.2 3.2e-213 1 CL0059
Cotton_A_07735_CDS 11 138 5 160 PF03731.15 Ku_N Domain 29 154 220 43.7 2.6e-11 1 CL0128
Cotton_A_07735_CDS 209 415 208 419 PF02735.16 Ku Domain 2 203 204 147.1 5.3e-43 1 CL0616
Cotton_A_07735_CDS 436 508 433 538 PF03730.14 Ku_C Family 4 76 88 27.8 3e-06 1 No_clan
Cotton_A_07735_CDS 543 658 543 659 PF08785.11 Ku_PK_bind Domain 1 119 120 107.0 6.2e-31 1 No_clan
Cotton_A_04857_CDS 1 164 1 164 PF00838.17 TCTP Domain 1 166 166 192.7 5.5e-57 1 CL0080
Cotton_A_23221_CDS 29 167 28 170 PF04043.15 PMEI Domain 2 150 154 62.8 4.4e-17 1 No_clan
Cotton_A_08793_CDS 119 237 119 239 PF09335.11 SNARE_assoc Family 1 118 120 62.2 6e-17 1 No_clan
Cotton_A_30029_CDS 110 219 108 220 PF02357.19 NusG Domain 3 94 95 33.5 4.6e-08 1 CL0439
Cotton_A_19532_CDS 108 263 108 274 PF07859.13 Abhydrolase_3 Domain 1 156 211 163.4 6.4e-48 1 CL0028
Cotton_A_36307_CDS 45 291 40 292 PF00141.23 peroxidase Domain 2 228 229 245.3 6.2e-73 1 CL0617
Cotton_A_28896_CDS 96 186 88 188 PF12068.8 PH_RBD Domain 77 166 169 63.4 1.8e-17 1 CL0266
Cotton_A_28896_CDS 388 615 387 616 PF00566.18 RabGAP-TBC Family 2 214 215 170.2 4.9e-50 1 No_clan
Cotton_A_13849_CDS 147 233 147 238 PF03109.16 ABC1 Family 1 89 119 90.9 6.3e-26 1 CL0016
Cotton_A_19252_CDS 83 131 82 136 PF00013.29 KH_1 Domain 2 51 66 37.7 1.3e-09 1 CL0007
Cotton_A_19252_CDS 193 261 192 262 PF00013.29 KH_1 Domain 2 65 66 38.7 6.4e-10 1 CL0007
Cotton_A_19252_CDS 435 501 435 503 PF00013.29 KH_1 Domain 1 64 66 28.1 1.4e-06 1 CL0007
Cotton_A_19252_CDS 603 666 603 667 PF00013.29 KH_1 Domain 1 65 66 30.1 3.1e-07 1 CL0007
Cotton_A_06036_CDS 47 162 47 162 PF04749.17 PLAC8 Family 1 99 99 89.2 2.7e-25 1 No_clan
Cotton_A_05805_CDS 1 102 1 106 PF04825.13 Rad21_Rec8_N Family 1 105 110 125.8 8e-37 1 No_clan
Cotton_A_05805_CDS 1078 1128 1075 1129 PF04824.16 Rad21_Rec8 Family 4 54 55 68.2 2.8e-19 1 CL0157
Cotton_A_11595_CDS 4 66 2 67 PF13499.6 EF-hand_7 Domain 3 70 71 32.4 9.7e-08 1 CL0220
Cotton_A_11595_CDS 91 139 90 140 PF13833.6 EF-hand_8 Domain 3 52 55 37.6 1.4e-09 1 CL0220
Cotton_A_25471_CDS 6 92 5 121 PF18052.1 Rx_N Domain 2 84 93 63.5 1.6e-17 1 No_clan
Cotton_A_25471_CDS 171 290 162 299 PF01852.19 START Domain 50 176 209 52.4 4.4e-14 1 CL0209
Cotton_A_12240_CDS 10 57 10 57 PF00249.31 Myb_DNA-binding Domain 1 46 46 54.6 9e-15 1 CL0123
Cotton_A_12240_CDS 63 108 63 108 PF00249.31 Myb_DNA-binding Domain 1 46 46 44.3 1.5e-11 1 CL0123
Cotton_A_02195_CDS 91 313 91 314 PF07859.13 Abhydrolase_3 Domain 1 210 211 186.0 8e-55 1 CL0028
Cotton_A_21408_CDS 9 252 1 253 PF03151.16 TPT Family 47 289 290 131.3 4.2e-38 1 CL0184
Cotton_A_16604_CDS 14 117 14 117 PF02991.16 Atg8 Domain 1 104 104 171.5 4.2e-51 1 CL0072
Cotton_A_09082_CDS 145 201 145 201 PF06886.11 TPX2 Family 1 57 57 73.1 1.6e-20 1 No_clan
Cotton_A_13655_CDS 36 212 30 213 PF07714.17 Pkinase_Tyr Domain 9 188 259 107.4 7.1e-31 1 CL0016
Cotton_A_30225_CDS 184 293 184 293 PF02770.19 Acyl-CoA_dh_M Domain 1 97 97 49.2 4.4e-13 1 No_clan
Cotton_A_30225_CDS 325 482 324 482 PF00441.24 Acyl-CoA_dh_1 Domain 5 150 150 41.9 1.1e-10 1 CL0087
Cotton_A_30225_CDS 524 657 521 661 PF01756.19 ACOX Family 4 138 180 60.2 1.8e-16 1 CL0087
Cotton_A_04051_CDS 13 173 13 173 PF01554.18 MatE Family 1 161 161 113.2 9.3e-33 1 CL0222
Cotton_A_04051_CDS 235 396 235 398 PF01554.18 MatE Family 1 159 161 113.4 7.8e-33 1 CL0222
Cotton_A_12181_CDS 17 440 15 440 PF00909.21 Ammonium_transp Family 2 399 399 429.0 1.4e-128 1 No_clan
Cotton_A_24421_CDS 21 58 20 58 PF08263.12 LRRNT_2 Family 2 41 41 22.7 8.9e-05 1 No_clan
Cotton_A_24421_CDS 86 142 85 143 PF13855.6 LRR_8 Repeat 2 59 61 43.8 1.5e-11 1 CL0022
Cotton_A_24421_CDS 319 356 312 356 PF08263.12 LRRNT_2 Family 2 41 41 16.9 0.006 1 No_clan
Cotton_A_24421_CDS 363 419 359 419 PF13855.6 LRR_8 Repeat 5 61 61 27.6 1.8e-06 1 CL0022
Cotton_A_24421_CDS 576 845 572 848 PF07714.17 Pkinase_Tyr Domain 5 256 259 160.6 4.3e-47 1 CL0016
Cotton_A_23495_CDS 302 342 298 342 PF00010.26 HLH Domain 10 53 53 34.9 1.1e-08 1 No_clan
Cotton_A_08542_CDS 402 675 402 678 PF00664.23 ABC_membrane Family 1 270 274 194.0 3.9e-57 1 CL0241
Cotton_A_08542_CDS 747 895 746 895 PF00005.27 ABC_tran Domain 2 137 137 110.5 9e-32 1 CL0023
Cotton_A_08542_CDS 1045 1270 1023 1276 PF00664.23 ABC_membrane Family 45 271 274 144.8 3.9e-42 1 CL0241
Cotton_A_08542_CDS 1342 1489 1341 1490 PF00005.27 ABC_tran Domain 2 136 137 107.1 9.4e-31 1 CL0023
Cotton_A_22399_CDS 44 89 43 90 PF00847.20 AP2 Domain 2 51 54 26.2 6.9e-06 1 CL0081
Cotton_A_22399_CDS 166 262 166 278 PF02362.21 B3 Family 1 84 101 79.9 9.8e-23 1 CL0405
Cotton_A_01511_CDS 54 298 54 298 PF03087.14 DUF241 Family 1 234 234 254.8 8.6e-76 1 CL0133
Cotton_A_01437_CDS 69 128 67 128 PF00046.29 Homeodomain Domain 3 57 57 69.0 2.2e-19 1 CL0123
Cotton_A_18288_CDS 95 155 92 163 PF00382.19 TFIIB Domain 4 64 71 47.5 1.3e-12 1 CL0065
Cotton_A_02572_CDS 145 166 142 167 PF00642.24 zf-CCCH Family 4 26 27 29.9 3.7e-07 1 CL0537
Cotton_A_02572_CDS 248 293 245 305 PF00076.22 RRM_1 Domain 10 58 70 25.6 8e-06 1 CL0221
Cotton_A_33009_CDS 6 101 5 105 PF13881.6 Rad60-SLD_2 Domain 2 97 111 126.7 4e-37 1 CL0072
Cotton_A_28551_CDS 1 251 1 252 PF05742.12 TANGO2 Family 1 252 253 225.8 8.6e-67 1 No_clan
Cotton_A_10960_CDS 68 248 67 249 PF17047.5 SMP_LBD Domain 3 179 180 55.1 6.1e-15 1 CL0648
Cotton_A_10960_CDS 264 360 264 365 PF00168.30 C2 Domain 1 98 103 81.7 4e-23 1 CL0154
Cotton_A_32211_CDS 7 99 1 104 PF00230.20 MIP Family 120 206 227 69.0 4.7e-19 1 No_clan
Cotton_A_19086_CDS 196 233 195 233 PF13923.6 zf-C3HC4_2 Domain 2 40 40 46.3 2.6e-12 1 CL0229
Cotton_A_19086_CDS 280 474 279 475 PF02190.16 LON_substr_bdg Family 2 206 208 84.6 8.6e-24 1 CL0178
Cotton_A_25286_CDS 7 299 6 299 PF05653.14 Mg_trans_NIPA Family 2 295 295 463.1 3.1e-139 1 CL0184
Cotton_A_31562_CDS 1 58 1 59 PF04783.12 DUF630 Family 1 58 59 82.9 1.3e-23 1 No_clan
Cotton_A_31562_CDS 391 701 390 703 PF04782.12 DUF632 Family 2 308 310 380.3 7.1e-114 1 No_clan
Cotton_A_38860_CDS 3 211 3 212 PF00091.25 Tubulin Domain 1 196 197 233.6 2.3e-69 1 CL0566
Cotton_A_38860_CDS 261 382 261 383 PF03953.17 Tubulin_C Domain 1 125 126 137.9 1.9e-40 1 CL0442
Cotton_A_12288_CDS 93 378 93 384 PF03552.14 Cellulose_synt Family 1 297 722 285.2 1.2e-84 1 CL0110
Cotton_A_27754_CDS 93 213 92 213 PF00903.25 Glyoxalase Domain 2 128 128 81.4 6.2e-23 1 CL0104
Cotton_A_27754_CDS 225 339 223 340 PF00903.25 Glyoxalase Domain 4 124 128 54.5 1.3e-14 1 CL0104
Cotton_A_11420_CDS 6 93 6 105 PF00168.30 C2 Domain 1 91 103 74.6 6.2e-21 1 CL0154
Cotton_A_09390_CDS 135 155 131 156 PF00642.24 zf-CCCH Family 5 26 27 24.5 1.8e-05 1 CL0537
Cotton_A_03202_CDS 11 53 10 56 PF00319.18 SRF-TF Domain 2 44 48 58.2 4.1e-16 1 No_clan
Cotton_A_14195_CDS 36 246 35 246 PF02309.16 AUX_IAA Family 2 234 237 189.5 8.2e-56 1 CL0072
Cotton_A_27901_CDS 79 187 71 198 PF01464.20 SLT Domain 10 104 117 46.7 2.2e-12 1 CL0037
Cotton_A_02786_CDS 93 208 92 209 PF03479.15 DUF296 Domain 2 106 107 86.5 1.4e-24 1 CL0615
Cotton_A_11847_CDS 5 99 5 120 PF18052.1 Rx_N Domain 1 89 93 70.1 1.5e-19 1 No_clan
Cotton_A_11847_CDS 194 401 180 415 PF00931.22 NB-ARC Domain 15 222 252 157.1 4.5e-46 1 CL0023
Cotton_A_26164_CDS 44 107 44 108 PF00462.24 Glutaredoxin Domain 1 59 60 41.9 8.5e-11 1 CL0172
Cotton_A_21837_CDS 29 90 13 90 PF05705.14 DUF829 Domain 6 66 241 36.3 5.4e-09 1 CL0028
Cotton_A_40115_CDS 34 288 31 288 PF00069.25 Pkinase Domain 4 264 264 185.9 8.9e-55 1 CL0016
Cotton_A_02761_CDS 4 74 2 81 PF03732.17 Retrotrans_gag Family 13 77 96 23.1 6.7e-05 1 CL0523
Cotton_A_36321_CDS 43 466 42 467 PF00450.22 Peptidase_S10 Domain 2 418 419 463.1 1.2e-138 1 CL0028
Cotton_A_34784_CDS 18 132 9 133 PF06110.11 DUF953 Family 10 118 119 124.2 2e-36 1 CL0172
Cotton_A_39445_CDS 20 126 20 129 PF00072.24 Response_reg Domain 1 109 112 85.9 2e-24 1 CL0304
Cotton_A_28955_CDS 12 120 11 121 PF01776.17 Ribosomal_L22e Family 2 109 109 158.1 8e-47 1 No_clan
Cotton_A_05554_CDS 36 181 35 182 PF00005.27 ABC_tran Domain 2 136 137 54.1 2.3e-14 1 CL0023
Cotton_A_00542_CDS 1 62 1 65 PF04819.12 DUF716 Family 78 135 138 61.2 7.9e-17 1 No_clan
Cotton_A_13486_CDS 38 243 38 243 PF00804.25 Syntaxin Domain 1 200 200 247.9 6.8e-74 1 CL0445
Cotton_A_13486_CDS 244 296 244 298 PF05739.19 SNARE Family 1 53 53 56.9 1.6e-15 1 No_clan
Cotton_A_21602_CDS 37 123 37 124 PF01195.19 Pept_tRNA_hydro Domain 1 76 171 89.2 2.8e-25 1 No_clan
Cotton_A_17403_CDS 11 100 9 126 PF18052.1 Rx_N Domain 3 84 93 83.8 7.8e-24 1 No_clan
Cotton_A_17403_CDS 191 271 187 284 PF00931.22 NB-ARC Domain 5 86 252 60.7 1.2e-16 1 CL0023
Cotton_A_11580_CDS 7 278 6 279 PF14938.6 SNAP Domain 2 281 282 383.8 4.9e-115 1 CL0020
Cotton_A_19562_CDS 138 514 138 514 PF03372.23 Exo_endo_phos Domain 1 233 233 53.5 2.3e-14 1 CL0530
Cotton_A_34627_CDS 125 160 125 161 PF03638.15 TCR Domain 1 37 38 42.6 5.3e-11 1 No_clan
Cotton_A_34627_CDS 211 246 210 247 PF03638.15 TCR Domain 2 37 38 47.9 1.2e-12 1 No_clan
Cotton_A_05114_CDS 149 216 149 218 PF00076.22 RRM_1 Domain 1 68 70 49.4 2.9e-13 1 CL0221
Cotton_A_05114_CDS 245 314 245 314 PF00076.22 RRM_1 Domain 1 70 70 45.9 3.8e-12 1 CL0221
Cotton_A_17861_CDS 1 159 1 160 PF04729.13 ASF1_hist_chap Family 1 153 154 219.8 1.5e-65 1 CL0159
Cotton_A_19435_CDS 13 243 13 243 PF04981.13 NMD3 Family 1 243 243 252.6 3.6e-75 1 No_clan
Cotton_A_34338_CDS 70 211 69 212 PF06799.11 DUF1230 Family 2 142 143 190.8 1.2e-56 1 No_clan
Cotton_A_03242_CDS 49 158 49 161 PF00411.19 Ribosomal_S11 Family 1 107 110 111.6 2.4e-32 1 CL0267
Cotton_A_03242_CDS 159 268 6 276 PF01201.22 Ribosomal_S8e Family 2 110 137 117.7 4.1e-34 1 No_clan
Cotton_A_16152_CDS 40 178 38 185 PF00069.25 Pkinase Domain 3 132 264 80.1 1.7e-22 1 CL0016
Cotton_A_16152_CDS 254 415 247 415 PF00069.25 Pkinase Domain 136 264 264 74.5 8.2e-21 1 CL0016
Cotton_A_11859_CDS 50 108 50 108 PF12678.7 zf-rbx1 Domain 1 55 55 88.4 2.6e-25 1 CL0229
Cotton_A_29917_CDS 105 567 92 570 PF00067.22 p450 Domain 30 459 463 275.7 6.4e-82 1 No_clan
Cotton_A_20198_CDS 12 123 7 123 PF11805.8 DUF3326 Family 229 337 337 126.2 1.2e-36 1 No_clan
Cotton_A_20442_CDS 77 484 75 484 PF01603.20 B56 Family 3 415 415 562.3 6.5e-169 1 CL0020
Cotton_A_32213_CDS 34 145 30 146 PF07732.15 Cu-oxidase_3 Domain 5 118 119 134.6 1.6e-39 1 CL0026
Cotton_A_32213_CDS 158 306 156 307 PF00394.22 Cu-oxidase Domain 3 158 159 134.6 3.2e-39 1 CL0026
Cotton_A_32213_CDS 423 538 402 539 PF07731.14 Cu-oxidase_2 Domain 24 136 137 136.5 4.7e-40 1 CL0026
Cotton_A_40702_CDS 49 108 47 108 PF13855.6 LRR_8 Repeat 3 61 61 39.2 4.2e-10 1 CL0022
Cotton_A_40702_CDS 121 180 112 180 PF13855.6 LRR_8 Repeat 2 61 61 33.1 3.4e-08 1 CL0022
Cotton_A_40702_CDS 218 238 218 240 PF00560.33 LRR_1 Repeat 1 21 23 13.2 0.11 1 CL0022
Cotton_A_40702_CDS 407 465 405 465 PF13855.6 LRR_8 Repeat 3 61 61 31.2 1.4e-07 1 CL0022
Cotton_A_38487_CDS 29 409 27 417 PF13520.6 AA_permease_2 Family 3 379 425 187.0 5e-55 1 CL0062
Cotton_A_38487_CDS 549 599 549 599 PF13906.6 AA_permease_C Domain 1 51 51 72.8 1.8e-20 1 CL0062
Cotton_A_38909_CDS 6 95 5 128 PF18052.1 Rx_N Domain 2 84 93 67.1 1.3e-18 1 No_clan
Cotton_A_00363_CDS 9 618 9 618 PF00012.20 HSP70 Family 1 599 599 870.7 4.2e-262 1 CL0108
Cotton_A_04706_CDS 148 175 145 175 PF01535.20 PPR Family 4 31 31 17.9 0.0025 1 CL0020
Cotton_A_04706_CDS 214 238 214 240 PF01535.20 PPR Family 1 25 31 13.9 0.048 1 CL0020
Cotton_A_04706_CDS 242 290 241 290 PF13041.6 PPR_2 Repeat 2 50 50 32.5 7.4e-08 1 CL0020
Cotton_A_04706_CDS 352 381 351 381 PF01535.20 PPR Family 2 31 31 22.4 9.3e-05 1 CL0020
Cotton_A_04706_CDS 427 451 426 451 PF01535.20 PPR Family 7 31 31 17.3 0.004 1 CL0020
Cotton_A_04706_CDS 489 536 488 536 PF13041.6 PPR_2 Repeat 2 50 50 39.9 3.6e-10 1 CL0020
Cotton_A_38588_CDS 18 76 18 165 PF01734.22 Patatin Family 1 51 204 43.5 3.9e-11 1 CL0323
Cotton_A_08416_CDS 141 354 141 357 PF07002.16 Copine Family 1 215 218 251.1 7.4e-75 1 CL0128
Cotton_A_08416_CDS 433 474 432 475 PF13920.6 zf-C3HC4_3 Domain 2 49 50 44.5 1e-11 1 CL0229
Cotton_A_20339_CDS 30 321 29 430 PF03372.23 Exo_endo_phos Domain 2 205 233 32.8 4.8e-08 1 CL0530
Cotton_A_03437_CDS 73 206 72 211 PF00210.24 Ferritin Domain 2 132 142 89.2 2.3e-25 1 CL0044
Cotton_A_38972_CDS 160 340 160 341 PF00390.19 malic Domain 1 181 182 260.7 6.4e-78 1 CL0603
Cotton_A_38972_CDS 351 604 351 604 PF03949.15 Malic_M Domain 1 258 258 320.7 5.9e-96 1 CL0063
Cotton_A_17052_CDS 105 217 105 217 PF00919.20 UPF0004 Family 1 98 98 103.9 3.5e-30 1 CL0304
Cotton_A_17052_CDS 265 462 265 462 PF04055.21 Radical_SAM Domain 1 167 167 119.4 1.9e-34 1 CL0036
Cotton_A_39373_CDS 30 116 30 116 PF00234.22 Tryp_alpha_amyl Family 1 87 87 40.4 3e-10 1 CL0482
Cotton_A_14577_CDS 58 220 57 223 PF00270.29 DEAD Domain 2 173 176 142.5 1.1e-41 1 CL0023
Cotton_A_14577_CDS 259 343 258 351 PF00271.31 Helicase_C Family 2 87 111 63.4 2.2e-17 1 CL0023
Cotton_A_14577_CDS 358 384 355 384 PF00271.31 Helicase_C Family 85 111 111 26.0 8.7e-06 1 CL0023
Cotton_A_33616_CDS 1 67 1 67 PF11820.8 DUF3339 Family 1 67 67 126.1 4.3e-37 1 No_clan
Cotton_A_07870_CDS 23 204 23 205 PF13419.6 HAD_2 Family 1 177 178 106.8 1.3e-30 1 CL0137
Cotton_A_13658_CDS 37 389 36 389 PF12819.7 Malectin_like Domain 2 336 336 126.5 1.3e-36 1 CL0202
Cotton_A_13658_CDS 506 588 500 641 PF07714.17 Pkinase_Tyr Domain 7 95 259 51.9 6.3e-14 1 CL0016
Cotton_A_16556_CDS 67 242 65 243 PF02390.17 Methyltransf_4 Family 3 172 173 173.7 2.4e-51 1 CL0063
Cotton_A_17571_CDS 1 54 1 54 PF08246.12 Inhibitor_I29 Domain 5 58 58 64.1 1.2e-17 1 No_clan
Cotton_A_15756_CDS 102 300 102 301 PF03145.16 Sina Family 1 199 200 267.1 1.1e-79 1 CL0389
Cotton_A_06904_CDS 12 379 2 394 PF00067.22 p450 Domain 91 447 463 248.0 1.7e-73 1 No_clan
Cotton_A_18419_CDS 38 177 38 177 PF00056.23 Ldh_1_N Family 1 141 141 150.4 3.4e-44 1 CL0063
Cotton_A_18419_CDS 180 343 180 348 PF02866.18 Ldh_1_C Domain 1 158 167 88.4 4.8e-25 1 CL0341
Cotton_A_01554_CDS 12 258 12 259 PF06813.13 Nodulin-like Family 1 249 250 304.4 5.8e-91 1 CL0015
Cotton_A_30798_CDS 64 120 63 121 PF02701.15 zf-Dof Family 2 58 59 110.8 2.4e-32 1 No_clan
Cotton_A_34082_CDS 100 162 7 163 PF14510.6 ABC_trans_N Domain 30 80 81 42.8 6.1e-11 1 No_clan
Cotton_A_34082_CDS 188 370 188 372 PF00005.27 ABC_tran Domain 1 135 137 58.6 9.3e-16 1 CL0023
Cotton_A_34082_CDS 524 725 523 726 PF01061.24 ABC2_membrane Family 2 209 210 91.7 4.1e-26 1 CL0181
Cotton_A_27898_CDS 511 647 511 648 PF00004.29 AAA Domain 1 131 132 110.0 1.1e-31 1 CL0023
Cotton_A_27898_CDS 670 713 670 714 PF17862.1 AAA_lid_3 Domain 1 44 45 48.5 5.6e-13 1 CL0671
Cotton_A_27898_CDS 740 941 738 943 PF01434.18 Peptidase_M41 Domain 3 189 191 84.3 9.3e-24 1 CL0126
Cotton_A_24776_CDS 92 525 90 530 PF00854.21 PTR2 Family 3 390 395 290.5 1.8e-86 1 CL0015
Cotton_A_05064_CDS 1 86 1 90 PF12776.7 Myb_DNA-bind_3 Domain 6 92 96 64.1 1.7e-17 1 CL0123
Cotton_A_37133_CDS 23 360 23 360 PF00443.29 UCH Family 1 257 257 208.5 1.2e-61 1 CL0125
Cotton_A_26807_CDS 66 266 64 267 PF01633.20 Choline_kinase Family 3 212 213 234.2 1.2e-69 1 CL0016
Cotton_A_15621_CDS 580 636 580 637 PF08373.10 RAP Domain 1 57 58 56.5 2.2e-15 1 CL0236
Cotton_A_28528_CDS 76 124 74 125 PF00847.20 AP2 Domain 3 53 54 45.0 9.2e-12 1 CL0081
Cotton_A_22638_CDS 1 74 1 77 PF00421.19 PSII Family 428 504 507 84.9 4.8e-24 1 No_clan
Cotton_A_00770_CDS 18 112 16 116 PF02362.21 B3 Family 3 97 101 52.0 5.1e-14 1 CL0405
Cotton_A_01852_CDS 5 67 5 69 PF00179.26 UQ_con Domain 1 64 140 62.6 2.9e-17 1 CL0208
Cotton_A_38375_CDS 15 53 14 55 PF12937.7 F-box-like Domain 7 46 48 27.7 1.8e-06 1 CL0271
Cotton_A_24825_CDS 102 135 102 135 PF06747.13 CHCH Domain 1 34 35 32.6 5.9e-08 1 CL0351
Cotton_A_31393_CDS 328 399 327 399 PF02201.18 SWIB Domain 2 74 74 79.2 1.5e-22 1 No_clan
Cotton_A_29669_CDS 119 390 117 392 PF00664.23 ABC_membrane Family 3 272 274 182.1 1.7e-53 1 CL0241
Cotton_A_29669_CDS 459 608 459 608 PF00005.27 ABC_tran Domain 1 137 137 125.3 2.3e-36 1 CL0023
Cotton_A_29669_CDS 777 1043 773 1045 PF00664.23 ABC_membrane Family 6 271 274 178.5 2.1e-52 1 CL0241
Cotton_A_29669_CDS 1115 1263 1114 1263 PF00005.27 ABC_tran Domain 2 137 137 119.0 2e-34 1 CL0023
Cotton_A_06828_CDS 96 167 57 167 PF12796.7 Ank_2 Repeat 24 83 83 40.3 3.6e-10 1 CL0465
Cotton_A_06828_CDS 323 343 320 344 PF00642.24 zf-CCCH Family 5 26 27 22.6 7.2e-05 1 CL0537
Cotton_A_40520_CDS 9 35 8 36 PF00036.32 EF-hand_1 Domain 2 28 29 26.0 4e-06 1 CL0220
Cotton_A_40520_CDS 43 109 43 109 PF13499.6 EF-hand_7 Domain 1 71 71 53.0 3.4e-14 1 CL0220
Cotton_A_22272_CDS 48 283 45 285 PF00931.22 NB-ARC Domain 4 250 252 159.3 9.6e-47 1 CL0023
Cotton_A_23370_CDS 41 110 40 111 PF07983.13 X8 Domain 2 75 76 74.9 6e-21 1 No_clan
Cotton_A_06992_CDS 7 52 5 69 PF00410.19 Ribosomal_S8 Domain 3 47 127 31.7 1.2e-07 1 No_clan
Cotton_A_06992_CDS 72 105 65 105 PF00410.19 Ribosomal_S8 Domain 94 127 127 33.7 2.9e-08 1 No_clan
Cotton_A_20337_CDS 48 101 47 106 PF00403.26 HMA Domain 2 55 62 39.4 5.9e-10 1 No_clan
Cotton_A_20337_CDS 137 183 135 216 PF00403.26 HMA Domain 3 53 62 41.1 1.8e-10 1 No_clan
Cotton_A_34384_CDS 198 424 197 466 PF03016.15 Exostosin Family 2 195 300 175.9 1.1e-51 1 No_clan
Cotton_A_26897_CDS 63 89 63 95 PF13450.6 NAD_binding_8 Domain 1 27 68 23.0 6.7e-05 1 CL0063
Cotton_A_26897_CDS 210 482 209 483 PF08491.10 SE Family 2 275 276 336.5 9.3e-101 1 CL0063
Cotton_A_27333_CDS 7 105 5 125 PF00335.20 Tetraspanin Family 3 112 229 54.3 1.5e-14 1 CL0347
Cotton_A_25978_CDS 10 118 10 118 PF00255.19 GSHPx Family 1 108 108 142.6 2.9e-42 1 CL0172
Cotton_A_06845_CDS 18 177 17 180 PF03248.13 Rer1 Family 2 168 171 242.1 2.6e-72 1 No_clan
Cotton_A_29940_CDS 111 129 109 129 PF00612.27 IQ Motif 3 21 21 23.2 3.5e-05 1 CL0220
Cotton_A_05377_CDS 8 144 7 144 PF03244.14 PSI_PsaH Family 2 139 139 229.4 8.9e-69 1 No_clan
Cotton_A_20689_CDS 15 116 15 116 PF01990.17 ATP-synt_F Family 1 91 91 101.6 2.2e-29 1 No_clan
Cotton_A_20026_CDS 3 211 3 212 PF00091.25 Tubulin Domain 1 196 197 236.3 3.4e-70 1 CL0566
Cotton_A_20026_CDS 261 382 261 383 PF03953.17 Tubulin_C Domain 1 125 126 139.7 5.4e-41 1 CL0442
Cotton_A_09077_CDS 94 518 94 519 PF00854.21 PTR2 Family 1 394 395 359.1 2.5e-107 1 CL0015
Cotton_A_30685_CDS 90 193 70 198 PF03007.16 WES_acyltransf Domain 65 166 264 35.5 9e-09 1 CL0149
Cotton_A_30685_CDS 346 484 346 484 PF06974.13 DUF1298 Family 1 145 145 139.4 7.9e-41 1 No_clan
Cotton_A_14252_CDS 61 153 61 154 PF06749.12 DUF1218 Family 1 90 91 59.3 4.2e-16 1 No_clan
Cotton_A_12482_CDS 96 129 92 130 PF10369.9 ALS_ss_C Family 40 73 74 34.1 2.4e-08 1 CL0070
Cotton_A_16244_CDS 1 67 1 67 PF11820.8 DUF3339 Family 1 67 67 124.7 1.2e-36 1 No_clan
Cotton_A_30560_CDS 11 76 3 88 PF00091.25 Tubulin Domain 33 96 197 36.4 5.8e-09 1 CL0566
Cotton_A_17713_CDS 197 343 195 343 PF00005.27 ABC_tran Domain 3 137 137 102.9 2e-29 1 CL0023
Cotton_A_10685_CDS 70 117 70 119 PF13041.6 PPR_2 Repeat 1 48 50 44.3 1.5e-11 1 CL0020
Cotton_A_10685_CDS 170 200 168 200 PF12854.7 PPR_1 Repeat 4 34 34 29.5 4.2e-07 1 CL0020
Cotton_A_10685_CDS 203 247 202 251 PF13041.6 PPR_2 Repeat 2 46 50 49.1 4.9e-13 1 CL0020
Cotton_A_10685_CDS 304 351 304 352 PF13041.6 PPR_2 Repeat 1 49 50 43.3 3.1e-11 1 CL0020
Cotton_A_10685_CDS 379 403 378 405 PF01535.20 PPR Family 2 26 31 11.1 0.37 1 CL0020
Cotton_A_10685_CDS 448 473 445 474 PF01535.20 PPR Family 5 30 31 9.4 1.3 1 CL0020
Cotton_A_20437_CDS 10 36 10 36 PF08513.11 LisH Domain 1 27 27 30.8 1.9e-07 1 CL0561
Cotton_A_20437_CDS 613 639 604 640 PF00400.32 WD40 Repeat 11 37 38 17.0 0.0083 1 CL0186
Cotton_A_20437_CDS 648 682 644 682 PF00400.32 WD40 Repeat 5 38 38 24.8 2.7e-05 1 CL0186
Cotton_A_20437_CDS 690 725 688 726 PF00400.32 WD40 Repeat 4 37 38 13.3 0.11 1 CL0186
Cotton_A_20437_CDS 771 805 769 806 PF00400.32 WD40 Repeat 3 37 38 23.9 5.2e-05 1 CL0186
Cotton_A_20437_CDS 859 892 854 892 PF00400.32 WD40 Repeat 6 38 38 15.2 0.03 1 CL0186
Cotton_A_20688_CDS 14 38 13 39 PF00642.24 zf-CCCH Family 2 26 27 30.2 2.9e-07 1 CL0537
Cotton_A_20688_CDS 83 139 82 140 PF00076.22 RRM_1 Domain 13 69 70 27.3 2.3e-06 1 CL0221
Cotton_A_20688_CDS 150 174 149 174 PF00642.24 zf-CCCH Family 2 27 27 21.6 0.00014 1 CL0537
Cotton_A_15883_CDS 7 113 4 113 PF07714.17 Pkinase_Tyr Domain 171 259 259 39.1 5e-10 1 CL0016
Cotton_A_04526_CDS 28 141 27 143 PF07732.15 Cu-oxidase_3 Domain 2 117 119 129.5 6.1e-38 1 CL0026
Cotton_A_04526_CDS 155 303 153 304 PF00394.22 Cu-oxidase Domain 3 158 159 109.9 1.3e-31 1 CL0026
Cotton_A_04526_CDS 408 530 407 532 PF07731.14 Cu-oxidase_2 Domain 2 135 137 77.0 1.1e-21 1 CL0026
Cotton_A_36181_CDS 1 164 1 164 PF00022.19 Actin Family 76 267 407 167.0 4.9e-49 1 CL0108
Cotton_A_10491_CDS 389 419 388 420 PF08209.11 Sgf11 Family 2 32 33 61.5 3.9e-17 1 CL0361
Cotton_A_14492_CDS 64 309 63 310 PF00520.31 Ion_trans Family 2 244 245 121.9 2.5e-35 1 CL0030
Cotton_A_14492_CDS 402 486 400 487 PF00027.29 cNMP_binding Domain 3 88 89 56.7 1.8e-15 1 CL0029
Cotton_A_14492_CDS 532 623 532 624 PF12796.7 Ank_2 Repeat 1 82 83 46.4 4.6e-12 1 CL0465
Cotton_A_14492_CDS 632 708 627 720 PF12796.7 Ank_2 Repeat 4 71 83 41.5 1.5e-10 1 CL0465
Cotton_A_14492_CDS 803 865 802 865 PF11834.8 KHA Family 2 67 67 74.7 4.5e-21 1 No_clan
Cotton_A_16558_CDS 162 439 152 446 PF00295.17 Glyco_hydro_28 Domain 56 320 325 92.7 2.2e-26 1 CL0268
Cotton_A_26366_CDS 1 132 1 132 PF14009.6 DUF4228 Family 18 179 179 75.5 6.8e-21 1 No_clan
Cotton_A_41217_CDS 303 438 201 441 PF04577.14 DUF563 Family 87 205 209 62.3 6.7e-17 1 No_clan
Cotton_A_23600_CDS 257 626 257 626 PF03514.14 GRAS Family 1 374 374 409.7 1e-122 1 CL0063
Cotton_A_15632_CDS 69 358 68 359 PF00067.22 p450 Domain 2 299 463 61.2 7.6e-17 1 No_clan
Cotton_A_15632_CDS 392 556 375 566 PF00067.22 p450 Domain 316 449 463 71.4 6.1e-20 1 No_clan
Cotton_A_05870_CDS 555 593 553 604 PF07529.13 HSA Domain 6 44 71 33.0 5.6e-08 1 CL0023
Cotton_A_31769_CDS 11 146 9 148 PF04970.13 LRAT Domain 3 125 127 101.9 2.9e-29 1 CL0125
Cotton_A_34844_CDS 10 57 10 57 PF00319.18 SRF-TF Domain 1 48 48 80.3 5.3e-23 1 No_clan
Cotton_A_34844_CDS 81 169 79 170 PF01486.17 K-box Family 4 92 93 83.3 9.9e-24 1 No_clan
Cotton_A_27270_CDS 32 126 31 126 PF14966.6 DNA_repr_REX1B Family 2 95 95 118.0 2.1e-34 1 No_clan
Cotton_A_27535_CDS 80 314 79 314 PF13641.6 Glyco_tranf_2_3 Domain 3 230 230 82.9 3e-23 1 CL0110
Cotton_A_10470_CDS 28 283 26 283 PF00069.25 Pkinase Domain 4 264 264 157.4 4.3e-46 1 CL0016
Cotton_A_04743_CDS 239 418 239 418 PF04833.15 COBRA Family 1 165 165 175.8 6.4e-52 1 No_clan
Cotton_A_39418_CDS 158 382 157 384 PF03000.14 NPH3 Family 3 245 258 192.1 1.3e-56 1 No_clan
Cotton_A_23161_CDS 37 136 35 243 PF03634.13 TCP Family 3 90 156 111.4 6e-32 1 No_clan
Cotton_A_11053_CDS 27 83 26 84 PF02701.15 zf-Dof Family 2 58 59 116.7 3.6e-34 1 No_clan
Cotton_A_08637_CDS 26 104 25 116 PF05705.14 DUF829 Domain 2 82 241 40.9 2.1e-10 1 CL0028
Cotton_A_08637_CDS 133 201 131 205 PF05705.14 DUF829 Domain 6 73 241 45.9 6.3e-12 1 CL0028
Cotton_A_33279_CDS 26 193 25 194 PF05042.13 Caleosin Family 2 169 170 239.7 1.6e-71 1 CL0220
Cotton_A_26499_CDS 18 74 18 85 PF00076.22 RRM_1 Domain 1 56 70 59.8 1.6e-16 1 CL0221
Cotton_A_06112_CDS 90 313 90 314 PF07859.13 Abhydrolase_3 Domain 1 210 211 202.0 9.6e-60 1 CL0028
Cotton_A_33570_CDS 53 233 52 233 PF03924.13 CHASE Domain 2 188 188 120.9 5.8e-35 1 CL0165
Cotton_A_33570_CDS 323 388 323 388 PF00512.25 HisKA Domain 1 67 67 55.8 3.5e-15 1 CL0025
Cotton_A_33570_CDS 435 613 435 616 PF02518.26 HATPase_c Domain 1 109 112 109.0 1.8e-31 1 CL0025
Cotton_A_33570_CDS 725 853 725 854 PF00072.24 Response_reg Domain 1 111 112 43.5 2.9e-11 1 CL0304
Cotton_A_10142_CDS 52 101 51 102 PF00847.20 AP2 Domain 2 53 54 46.5 3.1e-12 1 CL0081
Cotton_A_24792_CDS 18 143 16 143 PF02365.15 NAM Family 2 126 126 117.0 9.4e-34 1 No_clan
Cotton_A_30148_CDS 74 185 57 185 PF00134.23 Cyclin_N Domain 21 127 127 94.7 3.4e-27 1 CL0065
Cotton_A_30148_CDS 187 295 187 310 PF02984.19 Cyclin_C Domain 1 105 119 54.5 1.1e-14 1 CL0065
Cotton_A_24247_CDS 1 48 1 97 PF00078.27 RVT_1 Family 132 180 222 32.7 5.1e-08 1 CL0027
Cotton_A_24247_CDS 139 177 137 181 PF17921.1 Integrase_H2C2 Domain 3 39 58 35.7 6.9e-09 1 CL0361
Cotton_A_33037_CDS 2 431 1 442 PF00067.22 p450 Domain 30 454 463 297.1 2e-88 1 No_clan
Cotton_A_34035_CDS 15 175 15 176 PF00071.22 Ras Domain 1 161 162 203.5 1.5e-60 1 CL0023
Cotton_A_11638_CDS 22 68 19 68 PF00241.20 Cofilin_ADF Domain 75 121 121 48.0 9.5e-13 1 CL0092
Cotton_A_12333_CDS 51 321 47 322 PF07714.17 Pkinase_Tyr Domain 5 258 259 136.3 1.1e-39 1 CL0016
Cotton_A_21710_CDS 3 36 3 37 PF04419.14 4F5 Family 1 37 38 28.5 2e-06 1 CL0361
Cotton_A_21710_CDS 39 76 39 76 PF12907.7 zf-met2 Family 1 38 38 72.7 1.9e-20 1 CL0361
Cotton_A_30245_CDS 54 181 54 195 PF00781.24 DAGK_cat Family 1 115 126 88.5 2.6e-25 1 CL0240
Cotton_A_23171_CDS 147 244 147 244 PF08414.10 NADPH_Ox Family 1 101 101 135.6 6.2e-40 1 CL0220
Cotton_A_23171_CDS 322 388 321 409 PF01794.19 Ferric_reduct Family 2 61 125 33.0 5.6e-08 1 CL0328
Cotton_A_02930_CDS 59 178 36 183 PF02536.14 mTERF Family 105 230 314 40.6 1.4e-10 1 No_clan
Cotton_A_02930_CDS 187 295 178 295 PF02536.14 mTERF Family 206 314 314 92.5 2.3e-26 1 No_clan
Cotton_A_02930_CDS 338 595 335 596 PF00348.17 polyprenyl_synt Domain 4 255 256 227.8 1.1e-67 1 CL0613
Cotton_A_18456_CDS 1 89 1 99 PF00332.18 Glyco_hydro_17 Domain 2 91 313 69.8 2.9e-19 1 CL0058
Cotton_A_29019_CDS 65 304 54 304 PF07714.17 Pkinase_Tyr Domain 14 259 259 93.3 1.4e-26 1 CL0016
Cotton_A_01469_CDS 28 83 28 84 PF00046.29 Homeodomain Domain 1 56 57 65.9 2.1e-18 1 CL0123
Cotton_A_01469_CDS 227 449 226 449 PF01852.19 START Domain 2 209 209 166.1 7e-49 1 CL0209
Cotton_A_27328_CDS 42 192 42 192 PF09758.9 FPL Family 1 148 148 184.3 1.3e-54 1 No_clan
Cotton_A_31123_CDS 97 194 97 194 PF08414.10 NADPH_Ox Family 1 101 101 127.8 1.6e-37 1 CL0220
Cotton_A_31123_CDS 354 509 353 509 PF01794.19 Ferric_reduct Family 2 125 125 74.1 1e-20 1 CL0328
Cotton_A_31123_CDS 568 646 554 647 PF08022.12 FAD_binding_8 Domain 43 108 109 54.3 1.2e-14 1 CL0076
Cotton_A_31123_CDS 653 853 653 854 PF08030.12 NAD_binding_6 Domain 1 155 156 166.2 5.8e-49 1 CL0091
Cotton_A_06251_CDS 130 298 117 298 PF00929.24 RNase_T Family 14 165 165 43.2 5.9e-11 1 CL0219
Cotton_A_40582_CDS 13 104 12 110 PF01453.24 B_lectin Domain 3 99 105 74.5 8.2e-21 1 No_clan
Cotton_A_40582_CDS 303 337 281 340 PF08276.11 PAN_2 Domain 23 60 67 21.2 0.00023 1 CL0168
Cotton_A_18846_CDS 61 109 60 109 PF13639.6 zf-RING_2 Domain 2 44 44 47.9 1.2e-12 1 CL0229
Cotton_A_09752_CDS 73 138 73 138 PF00226.31 DnaJ Domain 1 63 63 69.7 1.7e-19 1 CL0392
Cotton_A_27358_CDS 928 1037 875 1050 PF13672.6 PP2C_2 Family 88 198 210 29.5 5.1e-07 1 CL0238
Cotton_A_07175_CDS 1683 1825 1682 1825 PF00588.19 SpoU_methylase Family 2 142 142 87.0 1.3e-24 1 CL0098
Cotton_A_11345_CDS 185 434 179 434 PF07714.17 Pkinase_Tyr Domain 7 259 259 210.3 3e-62 1 CL0016
Cotton_A_41262_CDS 12 62 12 64 PF09713.10 A_thal_3526 Domain 1 51 53 94.9 2.4e-27 1 No_clan
Cotton_A_15917_CDS 40 165 40 165 PF14845.6 Glycohydro_20b2 Domain 1 137 137 73.6 2.3e-20 1 CL0546
Cotton_A_15917_CDS 190 510 190 511 PF00728.22 Glyco_hydro_20 Domain 1 353 354 239.5 6.8e-71 1 CL0058
Cotton_A_29659_CDS 50 138 4 138 PF00257.19 Dehydrin Family 68 164 164 51.9 1.3e-13 1 No_clan
Cotton_A_29659_CDS 138 182 137 182 PF00257.19 Dehydrin Family 119 164 164 30.3 5.3e-07 1 No_clan
Cotton_A_30002_CDS 49 129 18 129 PF12796.7 Ank_2 Repeat 19 83 83 42.8 6e-11 1 CL0465
Cotton_A_30002_CDS 259 280 257 281 PF00642.24 zf-CCCH Family 4 26 27 20.6 0.00031 1 CL0537
Cotton_A_34989_CDS 70 157 17 159 PF04043.15 PMEI Domain 70 152 154 54.5 1.7e-14 1 No_clan
Cotton_A_34989_CDS 201 488 201 488 PF01095.19 Pectinesterase Family 1 298 298 450.0 2.5e-135 1 CL0268
Cotton_A_34505_CDS 163 206 158 207 PF13041.6 PPR_2 Repeat 6 49 50 33.9 2.6e-08 1 CL0020
Cotton_A_34505_CDS 232 257 231 261 PF01535.20 PPR Family 2 27 31 20.7 0.00034 1 CL0020
Cotton_A_34505_CDS 267 295 266 296 PF01535.20 PPR Family 2 30 31 11.4 0.31 1 CL0020
Cotton_A_34505_CDS 305 331 302 331 PF01535.20 PPR Family 5 31 31 13.2 0.079 1 CL0020
Cotton_A_10108_CDS 65 208 65 208 PF01565.23 FAD_binding_4 Domain 1 139 139 67.2 1.2e-18 1 CL0077
Cotton_A_10108_CDS 240 437 240 439 PF09265.10 Cytokin-bind Domain 1 198 281 249.0 5.7e-74 1 CL0277
Cotton_A_29014_CDS 18 59 17 59 PF00010.26 HLH Domain 15 53 53 25.6 8.5e-06 1 No_clan
Cotton_A_20473_CDS 19 77 17 77 PF00046.29 Homeodomain Domain 3 57 57 60.9 7.9e-17 1 CL0123
Cotton_A_20473_CDS 163 371 162 372 PF01852.19 START Domain 2 208 209 186.9 2.9e-55 1 CL0209
Cotton_A_20473_CDS 697 837 696 837 PF08670.11 MEKHLA Domain 2 143 143 173.6 2.1e-51 1 CL0183
Cotton_A_28201_CDS 16 103 16 122 PF01992.16 vATP-synt_AC39 Family 1 89 336 94.1 1.2e-26 1 No_clan
Cotton_A_28201_CDS 153 365 144 368 PF01992.16 vATP-synt_AC39 Family 83 298 336 199.9 7.4e-59 1 No_clan
Cotton_A_27508_CDS 27 310 27 311 PF05910.12 DUF868 Family 1 278 279 340.9 6.4e-102 1 No_clan
Cotton_A_21192_CDS 288 435 287 436 PF16016.5 VASt Domain 2 153 154 116.3 1.6e-33 1 CL0209
Cotton_A_38870_CDS 99 282 99 285 PF02492.19 cobW Domain 1 173 177 186.5 3.1e-55 1 CL0023
Cotton_A_38870_CDS 356 450 356 450 PF07683.14 CobW_C Domain 1 94 94 71.1 5.5e-20 1 No_clan
Cotton_A_20894_CDS 2 351 1 375 PF02458.15 Transferase Family 6 348 434 207.1 3.7e-61 1 CL0149
Cotton_A_11170_CDS 21 171 21 194 PF00069.25 Pkinase Domain 1 153 264 104.8 4.9e-30 1 CL0016
Cotton_A_40738_CDS 11 215 11 217 PF04654.12 DUF599 Family 1 207 210 263.2 1.3e-78 1 No_clan
Cotton_A_21916_CDS 5 76 3 76 PF02798.20 GST_N Domain 3 76 76 61.2 9.1e-17 1 CL0172
Cotton_A_21916_CDS 124 188 73 188 PF13410.6 GST_C_2 Domain 7 69 69 50.0 2.2e-13 1 CL0497
Cotton_A_03894_CDS 24 108 18 109 PF00085.20 Thioredoxin Domain 16 102 103 53.9 1.4e-14 1 CL0172
Cotton_A_03894_CDS 174 237 174 238 PF00462.24 Glutaredoxin Domain 1 59 60 57.5 1.1e-15 1 CL0172
Cotton_A_03894_CDS 297 361 297 361 PF00462.24 Glutaredoxin Domain 1 60 60 62.0 4.7e-17 1 CL0172
Cotton_A_03894_CDS 404 468 404 468 PF00462.24 Glutaredoxin Domain 1 60 60 57.7 9.9e-16 1 CL0172
Cotton_A_21882_CDS 167 414 167 415 PF00928.21 Adap_comp_sub Family 1 263 264 207.0 3.3e-61 1 CL0448
Cotton_A_26684_CDS 5 74 4 76 PF07714.17 Pkinase_Tyr Domain 3 79 259 43.7 2e-11 1 CL0016
Cotton_A_16409_CDS 16 101 15 102 PF02519.14 Auxin_inducible Family 2 89 90 104.4 2.7e-30 1 No_clan
Cotton_A_20814_CDS 12 101 9 138 PF18052.1 Rx_N Domain 4 84 93 80.9 6.2e-23 1 No_clan
Cotton_A_20814_CDS 172 382 171 384 PF00931.22 NB-ARC Domain 2 211 252 153.9 4.4e-45 1 CL0023
Cotton_A_06308_CDS 4 87 1 87 PF00067.22 p450 Domain 340 427 463 72.7 2.5e-20 1 No_clan
Cotton_A_36509_CDS 46 186 45 187 PF03018.14 Dirigent Family 2 147 148 183.9 1.4e-54 1 CL0650
Cotton_A_15790_CDS 68 389 67 389 PF03405.14 FA_desaturase_2 Domain 2 326 326 524.1 1e-157 1 CL0044
Cotton_A_07898_CDS 29 53 29 53 PF06943.12 zf-LSD1 Domain 1 25 25 40.8 1.4e-10 1 No_clan
Cotton_A_07898_CDS 68 92 68 92 PF06943.12 zf-LSD1 Domain 1 25 25 46.8 1.9e-12 1 No_clan
Cotton_A_07898_CDS 127 151 127 151 PF06943.12 zf-LSD1 Domain 1 25 25 47.2 1.4e-12 1 No_clan
Cotton_A_10487_CDS 678 840 677 840 PF13890.6 Rab3-GTPase_cat Family 2 163 163 166.9 2.8e-49 1 No_clan
Cotton_A_07948_CDS 7 178 6 178 PF13967.6 RSN1_TM Family 2 156 156 149.7 5.2e-44 1 No_clan
Cotton_A_07948_CDS 199 361 199 361 PF14703.6 PHM7_cyt Domain 1 176 176 150.6 5.2e-44 1 CL0221
Cotton_A_07948_CDS 372 644 372 644 PF02714.15 RSN1_7TM Family 1 274 274 274.5 8.5e-82 1 CL0416
Cotton_A_07948_CDS 843 999 806 999 PF06217.12 GAGA_bind Domain 134 295 295 219.8 9.2e-65 1 No_clan
Cotton_A_08121_CDS 29 72 27 72 PF13639.6 zf-RING_2 Domain 3 44 44 47.3 1.9e-12 1 CL0229
Cotton_A_06618_CDS 4 65 1 66 PF00006.25 ATP-synt_ab Domain 148 211 213 49.9 3e-13 1 CL0023
Cotton_A_21826_CDS 26 138 26 170 PF00561.20 Abhydrolase_1 Domain 1 115 257 75.3 5.8e-21 1 CL0028
Cotton_A_08641_CDS 12 96 1 104 PF04571.14 Lipin_N Family 8 93 102 88.6 2.1e-25 1 No_clan
Cotton_A_08641_CDS 770 993 769 993 PF08235.13 LNS2 Domain 2 226 226 316.0 1.2e-94 1 CL0137
Cotton_A_30863_CDS 48 208 40 210 PF13668.6 Ferritin_2 Domain 10 134 136 25.7 1.1e-05 1 CL0044
Cotton_A_22668_CDS 197 565 197 566 PF03759.13 PRONE Family 1 362 363 616.0 1.8e-185 1 No_clan
Cotton_A_13986_CDS 138 419 133 419 PF06814.13 Lung_7-TM_R Family 7 295 295 168.0 2.7e-49 1 CL0192
Cotton_A_01923_CDS 60 450 49 451 PF00501.28 AMP-binding Family 16 422 423 330.7 1e-98 1 CL0378
Cotton_A_01923_CDS 459 534 459 534 PF13193.6 AMP-binding_C Domain 1 76 76 55.8 6.9e-15 1 CL0531
Cotton_A_05223_CDS 16 113 15 115 PF03195.14 LOB Family 2 96 99 101.1 4e-29 1 No_clan
Cotton_A_13910_CDS 63 479 63 481 PF05577.12 Peptidase_S28 Domain 1 432 434 266.6 3.7e-79 1 CL0028
Cotton_A_15024_CDS 186 236 186 238 PF14279.6 HNH_5 Domain 1 54 56 56.2 2.3e-15 1 CL0263
Cotton_A_24977_CDS 3 74 3 74 PF00240.23 ubiquitin Domain 1 72 72 116.6 3.1e-34 1 CL0072
Cotton_A_24977_CDS 102 147 102 147 PF01599.19 Ribosomal_S27 Domain 1 45 45 94.7 2.7e-27 1 CL0167
Cotton_A_08281_CDS 15 132 14 134 PF04535.12 DUF588 Domain 2 113 150 81.5 5.3e-23 1 CL0396
Cotton_A_25689_CDS 54 125 54 125 PF00240.23 ubiquitin Domain 1 72 72 113.9 2.1e-33 1 CL0072
Cotton_A_25689_CDS 130 201 130 201 PF00240.23 ubiquitin Domain 1 72 72 113.9 2.1e-33 1 CL0072
Cotton_A_25689_CDS 206 277 206 277 PF00240.23 ubiquitin Domain 1 72 72 113.9 2.1e-33 1 CL0072
Cotton_A_25689_CDS 282 353 282 353 PF00240.23 ubiquitin Domain 1 72 72 113.9 2.1e-33 1 CL0072
Cotton_A_25689_CDS 358 429 358 429 PF00240.23 ubiquitin Domain 1 72 72 113.9 2.1e-33 1 CL0072
Cotton_A_40066_CDS 35 172 22 173 PF02309.16 AUX_IAA Family 70 235 237 186.7 5.9e-55 1 CL0072
Cotton_A_29575_CDS 28 50 27 51 PF13912.6 zf-C2H2_6 Domain 2 24 27 37.2 2e-09 1 CL0361
Cotton_A_27495_CDS 5 97 5 100 PF12796.7 Ank_2 Repeat 1 80 83 30.1 5.6e-07 1 CL0465
Cotton_A_27495_CDS 108 200 108 215 PF12796.7 Ank_2 Repeat 1 73 83 44.4 1.8e-11 1 CL0465
Cotton_A_27495_CDS 295 403 292 414 PF13962.6 PGG Domain 4 103 116 71.1 6.6e-20 1 No_clan
Cotton_A_12965_CDS 236 520 233 520 PF04515.12 Choline_transpo Family 2 326 326 152.9 1.2e-44 1 No_clan
Cotton_A_36222_CDS 62 263 62 268 PF00106.25 adh_short Domain 1 189 195 89.8 1.5e-25 1 CL0063
Cotton_A_05518_CDS 14 234 13 234 PF00230.20 MIP Family 2 227 227 260.6 1.3e-77 1 No_clan
Cotton_A_33453_CDS 8 45 7 46 PF02736.19 Myosin_N Domain 2 39 40 39.5 3.6e-10 1 CL0010
Cotton_A_33453_CDS 61 505 61 506 PF00063.21 Myosin_head Domain 1 435 677 590.6 3.6e-177 1 CL0023
Cotton_A_33453_CDS 689 707 688 708 PF00612.27 IQ Motif 2 20 21 16.3 0.0058 1 CL0220
Cotton_A_33453_CDS 711 730 711 731 PF00612.27 IQ Motif 1 20 21 18.6 0.001 1 CL0220
Cotton_A_33453_CDS 737 756 736 756 PF00612.27 IQ Motif 2 21 21 19.3 0.00062 1 CL0220
Cotton_A_33453_CDS 808 827 807 827 PF00612.27 IQ Motif 2 21 21 16.9 0.0038 1 CL0220
Cotton_A_33453_CDS 1287 1406 1287 1407 PF01843.19 DIL Family 1 103 104 73.9 1.1e-20 1 No_clan
Cotton_A_08624_CDS 100 166 100 169 PF00076.22 RRM_1 Domain 1 66 70 51.5 6.4e-14 1 CL0221
Cotton_A_08624_CDS 193 262 193 264 PF00076.22 RRM_1 Domain 1 68 70 52.4 3.4e-14 1 CL0221
Cotton_A_08624_CDS 304 368 304 368 PF00076.22 RRM_1 Domain 1 70 70 69.3 1.8e-19 1 CL0221
Cotton_A_03765_CDS 30 217 30 314 PF04857.20 CAF1 Family 1 168 319 132.9 1.4e-38 1 CL0219
Cotton_A_38216_CDS 249 433 247 433 PF11721.8 Malectin Domain 3 165 165 136.3 1e-39 1 CL0202
Cotton_A_38216_CDS 510 778 507 778 PF07714.17 Pkinase_Tyr Domain 4 259 259 158.4 2e-46 1 CL0016
Cotton_A_26913_CDS 14 212 1 219 PF00067.22 p450 Domain 258 455 463 199.8 6.7e-59 1 No_clan
Cotton_A_26913_CDS 251 713 250 721 PF00067.22 p450 Domain 2 455 463 297.7 1.4e-88 1 No_clan
Cotton_A_35687_CDS 1 216 1 225 PF00067.22 p450 Domain 46 265 463 74.5 6.9e-21 1 No_clan
Cotton_A_35687_CDS 215 376 213 378 PF00067.22 p450 Domain 298 461 463 132.2 2.2e-38 1 No_clan
Cotton_A_23788_CDS 7 131 4 143 PF01217.20 Clat_adaptor_s Domain 4 128 142 29.1 7.7e-07 1 CL0212
Cotton_A_23788_CDS 159 222 159 235 PF00928.21 Adap_comp_sub Family 1 64 264 77.4 1.1e-21 1 CL0448
Cotton_A_35848_CDS 219 320 205 323 PF00421.19 PSII Family 389 504 507 94.2 7.5e-27 1 No_clan
Cotton_A_21565_CDS 121 394 87 432 PF00201.18 UDPGT Family 124 381 499 86.8 1.4e-24 1 CL0113
Cotton_A_00675_CDS 10 77 4 78 PF02519.14 Auxin_inducible Family 22 89 90 88.6 2.2e-25 1 No_clan
Cotton_A_08904_CDS 14 291 13 292 PF00248.21 Aldo_ket_red Domain 2 293 294 160.0 7.3e-47 1 No_clan
Cotton_A_21961_CDS 12 57 10 57 PF00319.18 SRF-TF Domain 3 48 48 83.6 4.7e-24 1 No_clan
Cotton_A_09152_CDS 98 281 98 281 PF01214.18 CK_II_beta Domain 1 182 182 267.8 4.4e-80 1 No_clan
Cotton_A_04237_CDS 92 246 89 246 PF00005.27 ABC_tran Domain 4 137 137 78.8 5.2e-22 1 CL0023
Cotton_A_04237_CDS 285 361 285 374 PF12848.7 ABC_tran_Xtn Domain 1 73 85 81.8 2.8e-23 1 CL0023
Cotton_A_04237_CDS 401 532 401 532 PF00005.27 ABC_tran Domain 1 137 137 82.5 3.8e-23 1 CL0023
Cotton_A_30950_CDS 24 132 21 133 PF01277.17 Oleosin Family 4 112 113 138.6 6.9e-41 1 No_clan
Cotton_A_21581_CDS 30 67 30 68 PF08263.12 LRRNT_2 Family 1 40 41 32.4 8.7e-08 1 No_clan
Cotton_A_21581_CDS 384 404 383 405 PF00560.33 LRR_1 Repeat 2 22 23 11.3 0.42 1 CL0022
Cotton_A_21581_CDS 526 585 525 585 PF13855.6 LRR_8 Repeat 2 61 61 28.3 1.1e-06 1 CL0022
Cotton_A_21581_CDS 706 765 705 765 PF13855.6 LRR_8 Repeat 2 61 61 36.4 3.3e-09 1 CL0022
Cotton_A_21581_CDS 1000 1268 997 1269 PF07714.17 Pkinase_Tyr Domain 4 258 259 159.6 8.7e-47 1 CL0016
Cotton_A_37369_CDS 224 261 217 265 PF09066.10 B2-adapt-app_C Domain 33 70 112 27.5 2.6e-06 1 CL0545
Cotton_A_02866_CDS 132 193 132 193 PF04406.14 TP6A_N Domain 1 62 62 74.8 3.9e-21 1 No_clan
Cotton_A_16340_CDS 1 62 1 65 PF01781.18 Ribosomal_L38e Family 1 63 69 112.8 5.9e-33 1 No_clan
Cotton_A_23699_CDS 56 243 55 243 PF08660.11 Alg14 Family 2 175 175 218.9 4.5e-65 1 CL0113
Cotton_A_35693_CDS 1 85 1 86 PF00141.23 peroxidase Domain 132 228 229 25.2 1.1e-05 1 CL0617
Cotton_A_24799_CDS 13 238 13 238 PF00244.20 14-3-3 Domain 1 222 222 340.9 2.8e-102 1 No_clan
Cotton_A_20970_CDS 33 74 15 78 PF03242.13 LEA_3 Family 46 89 93 23.3 8e-05 1 No_clan
Cotton_A_14973_CDS 24 291 24 294 PF00248.21 Aldo_ket_red Domain 1 290 294 240.6 2e-71 1 No_clan
Cotton_A_40427_CDS 7 203 2 207 PF01150.17 GDA1_CD39 Family 46 253 423 180.0 6e-53 1 CL0108
Cotton_A_18086_CDS 88 616 86 616 PF01019.21 G_glu_transpept Domain 3 512 512 593.6 3.3e-178 1 CL0052
Cotton_A_04020_CDS 30 479 30 481 PF00759.19 Glyco_hydro_9 Domain 1 409 411 458.7 2.4e-137 1 CL0059
Cotton_A_03903_CDS 46 287 45 295 PF00139.19 Lectin_legB Domain 2 237 249 223.2 3.7e-66 1 CL0004
Cotton_A_03903_CDS 373 635 372 637 PF00069.25 Pkinase Domain 2 260 264 154.6 3.2e-45 1 CL0016
Cotton_A_17568_CDS 27 100 15 100 PF00112.23 Peptidase_C1 Domain 146 218 218 87.3 1.5e-24 1 CL0125
Cotton_A_09932_CDS 86 269 82 271 PF00574.23 CLP_protease Domain 5 180 182 167.9 2.1e-49 1 CL0127
Cotton_A_14473_CDS 199 302 198 303 PF03479.15 DUF296 Domain 12 106 107 69.8 2.3e-19 1 CL0615
Cotton_A_01076_CDS 24 63 23 63 PF08263.12 LRRNT_2 Family 2 41 41 44.9 1e-11 1 No_clan
Cotton_A_01076_CDS 177 191 175 192 PF13516.6 LRR_6 Repeat 3 17 24 8.9 1.7 1 CL0022
Cotton_A_00956_CDS 43 160 19 217 PF00201.18 UDPGT Family 262 365 499 49.5 2.8e-13 1 CL0113
Cotton_A_02998_CDS 44 113 33 116 PF08700.11 Vps51 Family 14 83 87 32.4 7e-08 1 CL0295
Cotton_A_02998_CDS 150 346 148 354 PF16528.5 Exo84_C Domain 3 192 205 45.1 1e-11 1 CL0295
Cotton_A_32281_CDS 67 319 58 319 PF03151.16 TPT Family 32 290 290 73.8 1.4e-20 1 CL0184
Cotton_A_23133_CDS 304 353 303 353 PF00249.31 Myb_DNA-binding Domain 2 46 46 33.7 3.1e-08 1 CL0123
Cotton_A_10037_CDS 1 77 1 77 PF00421.19 PSII Family 1 77 507 138.7 2.4e-40 1 No_clan
Cotton_A_10614_CDS 249 401 248 401 PF02182.17 SAD_SRA Domain 2 157 157 164.7 1.3e-48 1 CL0178
Cotton_A_10614_CDS 432 529 432 529 PF05033.16 Pre-SET Family 1 109 109 63.5 2.5e-17 1 No_clan
Cotton_A_10614_CDS 548 680 548 680 PF00856.28 SET Family 1 169 169 51.4 1.6e-13 1 No_clan
Cotton_A_25998_CDS 31 101 28 102 PF00631.22 G-gamma Domain 4 67 68 42.3 5.4e-11 1 No_clan
Cotton_A_34172_CDS 292 362 292 363 PF04564.15 U-box Domain 1 71 73 69.6 1.9e-19 1 CL0229
Cotton_A_34172_CDS 426 464 425 465 PF00514.23 Arm Repeat 2 40 41 30.9 1.9e-07 1 CL0020
Cotton_A_24535_CDS 139 235 139 240 PF00168.30 C2 Domain 1 98 103 62.1 4.9e-17 1 CL0154
Cotton_A_19412_CDS 285 344 285 345 PF13855.6 LRR_8 Repeat 1 60 61 27.4 2.1e-06 1 CL0022
Cotton_A_01086_CDS 412 495 380 496 PF00501.28 AMP-binding Family 345 422 423 63.2 1.6e-17 1 CL0378
Cotton_A_01086_CDS 661 725 660 726 PF00550.25 PP-binding Domain 2 66 67 37.8 1.8e-09 1 CL0314
Cotton_A_01086_CDS 1283 1566 1278 1590 PF00199.19 Catalase Domain 41 319 383 25.9 5e-06 1 No_clan
Cotton_A_09796_CDS 19 186 17 191 PF01595.20 DUF21 Domain 3 171 176 130.2 6.4e-38 1 No_clan
Cotton_A_12268_CDS 53 110 50 110 PF04083.16 Abhydro_lipase Family 4 64 64 75.6 1.6e-21 1 CL0028
Cotton_A_12268_CDS 115 225 108 242 PF12146.8 Hydrolase_4 Family 23 124 239 28.0 1.2e-06 1 CL0028
Cotton_A_16301_CDS 114 183 95 186 PF00072.24 Response_reg Domain 41 109 112 49.2 5e-13 1 CL0304
Cotton_A_11677_CDS 255 508 255 508 PF04646.12 DUF604 Family 1 256 256 393.4 4.1e-118 1 CL0110
Cotton_A_06898_CDS 104 130 94 130 PF00400.32 WD40 Repeat 8 38 38 13.2 0.13 1 CL0186
Cotton_A_06898_CDS 212 240 205 241 PF00400.32 WD40 Repeat 10 37 38 15.2 0.029 1 CL0186
Cotton_A_06898_CDS 246 283 245 283 PF00400.32 WD40 Repeat 2 38 38 23.4 7.9e-05 1 CL0186
Cotton_A_06898_CDS 340 371 337 372 PF00400.32 WD40 Repeat 5 37 38 17.9 0.0042 1 CL0186
Cotton_A_06898_CDS 379 423 378 423 PF00400.32 WD40 Repeat 2 38 38 24.5 3.4e-05 1 CL0186
Cotton_A_08191_CDS 12 73 10 74 PF13499.6 EF-hand_7 Domain 3 70 71 35.8 8.3e-09 1 CL0220
Cotton_A_08191_CDS 83 145 82 146 PF13499.6 EF-hand_7 Domain 2 70 71 56.1 3.9e-15 1 CL0220
Cotton_A_21582_CDS 12 75 11 76 PF01246.20 Ribosomal_L24e Domain 2 65 66 91.8 2.2e-26 1 CL0175
Cotton_A_14077_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 54.5 9.5e-15 1 CL0123
Cotton_A_14077_CDS 67 111 67 112 PF00249.31 Myb_DNA-binding Domain 1 45 46 47.3 1.7e-12 1 CL0123
Cotton_A_08439_CDS 431 475 431 475 PF07223.11 DUF1421 Domain 1 45 45 80.1 7.6e-23 1 CL0214
Cotton_A_08891_CDS 34 130 29 130 PF03297.15 Ribosomal_S25 Family 5 101 101 143.1 2.5e-42 1 CL0123
Cotton_A_22125_CDS 8 475 5 475 PF02458.15 Transferase Family 5 434 434 391.1 5.2e-117 1 CL0149
Cotton_A_18631_CDS 708 924 705 928 PF00009.27 GTP_EFTU Domain 5 190 194 102.6 1.9e-29 1 CL0023
Cotton_A_18631_CDS 954 1030 954 1031 PF03144.25 GTP_EFTU_D2 Domain 1 73 74 40.1 3.5e-10 1 CL0575
Cotton_A_18631_CDS 1053 1155 1048 1155 PF11987.8 IF-2 Domain 4 105 105 76.0 2.2e-21 1 No_clan
Cotton_A_02678_CDS 168 240 167 241 PF00364.22 Biotin_lipoyl Domain 2 72 73 67.5 6.8e-19 1 CL0105
Cotton_A_02678_CDS 303 338 303 338 PF02817.17 E3_binding Family 1 36 36 53.7 1.9e-14 1 No_clan
Cotton_A_02678_CDS 365 595 362 595 PF00198.23 2-oxoacid_dh Domain 4 233 233 262.7 2.5e-78 1 CL0149
Cotton_A_32503_CDS 2 157 1 157 PF04561.14 RNA_pol_Rpb2_2 Domain 34 190 190 146.1 9.3e-43 1 No_clan
Cotton_A_32503_CDS 218 286 218 286 PF04565.16 RNA_pol_Rpb2_3 Domain 1 68 68 85.4 2.1e-24 1 No_clan
Cotton_A_32503_CDS 423 821 422 821 PF00562.28 RNA_pol_Rpb2_6 Domain 2 390 390 408.5 3e-122 1 CL0410
Cotton_A_32503_CDS 823 892 823 897 PF04560.20 RNA_pol_Rpb2_7 Domain 1 79 87 69.2 2.9e-19 1 No_clan
Cotton_A_32503_CDS 915 1034 910 1047 PF04997.12 RNA_pol_Rpb1_1 Domain 8 93 312 58.1 8.6e-16 1 No_clan
Cotton_A_20890_CDS 93 989 93 990 PF05911.11 FPP Coiled-coil 1 866 867 901.5 6.1e-271 1 No_clan
Cotton_A_22354_CDS 142 254 140 271 PF00561.20 Abhydrolase_1 Domain 3 111 257 78.8 5.1e-22 1 CL0028
Cotton_A_39618_CDS 2 49 1 49 PF02298.17 Cu_bind_like Domain 37 84 84 50.9 1.2e-13 1 CL0026
Cotton_A_22630_CDS 32 168 32 174 PF01936.18 NYN Domain 1 141 147 104.4 7e-30 1 CL0280
Cotton_A_22630_CDS 593 644 585 652 PF14418.6 OHA Domain 10 63 77 33.2 3.3e-08 1 No_clan
Cotton_A_34325_CDS 135 398 130 406 PF00069.25 Pkinase Domain 6 255 264 162.8 9.9e-48 1 CL0016
Cotton_A_23604_CDS 306 432 305 436 PF00638.18 Ran_BP1 Family 2 118 122 34.2 2.6e-08 1 CL0266
Cotton_A_00470_CDS 11 270 11 270 PF00685.27 Sulfotransfer_1 Domain 1 267 267 225.5 8e-67 1 CL0023
Cotton_A_15100_CDS 85 231 78 246 PF01852.19 START Domain 14 163 209 32.4 5.8e-08 1 CL0209
Cotton_A_37326_CDS 818 964 817 964 PF04096.14 Nucleoporin2 Family 2 149 149 155.4 1.1e-45 1 CL0661
Cotton_A_09784_CDS 208 263 203 264 PF03909.17 BSD Domain 3 57 58 49.3 3.6e-13 1 No_clan
Cotton_A_33169_CDS 42 310 42 312 PF00069.25 Pkinase Domain 1 260 264 168.3 2e-49 1 CL0016
Cotton_A_32754_CDS 34 495 34 500 PF00067.22 p450 Domain 1 456 463 297.5 1.6e-88 1 No_clan
Cotton_A_38306_CDS 1 38 1 38 PF08263.12 LRRNT_2 Family 4 41 41 39.2 6.1e-10 1 No_clan
Cotton_A_38306_CDS 68 126 66 126 PF13855.6 LRR_8 Repeat 3 61 61 45.6 4.2e-12 1 CL0022
Cotton_A_38306_CDS 262 281 262 284 PF00560.33 LRR_1 Repeat 1 20 23 10.0 1.2 1 CL0022
Cotton_A_38306_CDS 310 369 308 369 PF13855.6 LRR_8 Repeat 3 61 61 27.8 1.6e-06 1 CL0022
Cotton_A_38306_CDS 640 909 638 910 PF00069.25 Pkinase Domain 3 260 264 143.6 6.9e-42 1 CL0016
Cotton_A_09282_CDS 30 79 30 79 PF03107.16 C1_2 Domain 1 47 47 30.5 3.2e-07 1 CL0006
Cotton_A_09282_CDS 104 150 103 151 PF03107.16 C1_2 Domain 2 46 47 31.4 1.8e-07 1 CL0006
Cotton_A_13835_CDS 20 55 20 56 PF01394.20 Clathrin_propel Repeat 1 36 37 30.3 3.2e-07 1 CL0020
Cotton_A_13835_CDS 190 231 188 231 PF01394.20 Clathrin_propel Repeat 3 37 37 37.5 1.7e-09 1 CL0020
Cotton_A_13835_CDS 378 401 378 401 PF09268.10 Clathrin-link Family 1 24 24 34.7 8.2e-09 1 CL0020
Cotton_A_13835_CDS 403 468 403 468 PF13838.6 Clathrin_H_link Domain 1 66 66 103.0 5.6e-30 1 CL0020
Cotton_A_13835_CDS 591 724 586 727 PF00637.20 Clathrin Family 7 140 143 78.4 4.7e-22 1 CL0020
Cotton_A_13835_CDS 735 874 734 875 PF00637.20 Clathrin Family 2 142 143 75.3 4.1e-21 1 CL0020
Cotton_A_13835_CDS 884 1015 881 1019 PF00637.20 Clathrin Family 4 139 143 100.2 8.7e-29 1 CL0020
Cotton_A_13835_CDS 1027 1166 1027 1170 PF00637.20 Clathrin Family 1 138 143 107.6 4.7e-31 1 CL0020
Cotton_A_13835_CDS 1180 1315 1176 1316 PF00637.20 Clathrin Family 5 142 143 91.7 3.8e-26 1 CL0020
Cotton_A_13835_CDS 1322 1465 1322 1467 PF00637.20 Clathrin Family 1 141 143 100.9 5.3e-29 1 CL0020
Cotton_A_13835_CDS 1474 1613 1471 1613 PF00637.20 Clathrin Family 4 143 143 101.8 2.9e-29 1 CL0020
Cotton_A_08309_CDS 104 167 103 167 PF00808.23 CBFD_NFYB_HMF Domain 2 65 65 73.2 1.5e-20 1 CL0012
Cotton_A_31320_CDS 97 263 97 263 PF13359.6 DDE_Tnp_4 Domain 1 158 158 99.7 1.3e-28 1 CL0219
Cotton_A_24392_CDS 1 208 1 209 PF07279.11 DUF1442 Family 1 217 218 88.5 3.7e-25 1 CL0063
Cotton_A_10270_CDS 59 156 57 157 PF06749.12 DUF1218 Family 4 90 91 42.6 6.6e-11 1 No_clan
Cotton_A_05846_CDS 109 323 109 325 PF07002.16 Copine Family 1 216 218 250.3 1.4e-74 1 CL0128
Cotton_A_05846_CDS 365 404 363 406 PF13920.6 zf-C3HC4_3 Domain 3 48 50 33.9 2e-08 1 CL0229
Cotton_A_05434_CDS 61 237 61 246 PF00067.22 p450 Domain 1 181 463 29.4 3.2e-07 1 No_clan
Cotton_A_05434_CDS 243 464 239 477 PF00067.22 p450 Domain 214 442 463 140.7 5.6e-41 1 No_clan
Cotton_A_41257_CDS 28 87 28 87 PF00137.21 ATP-synt_C Family 1 60 60 55.5 5.3e-15 1 No_clan
Cotton_A_41257_CDS 112 171 112 171 PF00137.21 ATP-synt_C Family 1 60 60 38.9 7.9e-10 1 No_clan
Cotton_A_01067_CDS 89 449 88 449 PF03054.16 tRNA_Me_trans Family 2 356 356 415.7 1.3e-124 1 CL0039
Cotton_A_20069_CDS 77 160 61 162 PF00085.20 Thioredoxin Domain 17 101 103 29.0 7.7e-07 1 CL0172
Cotton_A_27737_CDS 178 291 161 294 PF01553.21 Acyltransferase Family 13 132 135 58.0 7.3e-16 1 CL0228
Cotton_A_20882_CDS 42 128 33 132 PF00651.31 BTB Domain 13 107 111 25.9 9.1e-06 1 CL0033
Cotton_A_20882_CDS 216 466 216 466 PF03000.14 NPH3 Family 1 258 258 207.8 2.2e-61 1 No_clan
Cotton_A_00420_CDS 27 94 26 94 PF00690.26 Cation_ATPase_N Domain 2 69 69 61.8 3.6e-17 1 No_clan
Cotton_A_00420_CDS 147 361 146 361 PF00122.20 E1-E2_ATPase Family 2 181 181 165.8 7.2e-49 1 No_clan
Cotton_A_00420_CDS 378 744 377 744 PF00702.26 Hydrolase Domain 2 210 210 73.2 3.6e-20 1 CL0137
Cotton_A_00420_CDS 815 1041 814 1041 PF00689.21 Cation_ATPase_C Family 2 182 182 167.8 2e-49 1 No_clan
Cotton_A_19838_CDS 24 123 24 124 PF15699.5 NPR1_interact Family 1 108 109 81.0 9e-23 1 No_clan
Cotton_A_17926_CDS 203 572 203 573 PF03514.14 GRAS Family 1 373 374 418.8 1.8e-125 1 CL0063
Cotton_A_34107_CDS 62 102 61 103 PF03790.13 KNOX1 Family 2 42 43 64.8 4e-18 1 No_clan
Cotton_A_34107_CDS 111 157 110 157 PF03791.13 KNOX2 Family 2 48 48 84.4 2.8e-24 1 No_clan
Cotton_A_34107_CDS 199 219 198 219 PF03789.13 ELK Domain 2 22 22 38.2 1e-09 1 No_clan
Cotton_A_34107_CDS 238 277 238 277 PF05920.11 Homeobox_KN Family 1 40 40 61.1 6.9e-17 1 CL0123
Cotton_A_26776_CDS 22 283 21 284 PF01459.22 Porin_3 Family 2 269 270 204.2 2.5e-60 1 CL0193
Cotton_A_26953_CDS 353 746 348 747 PF02181.23 FH2 Family 6 371 372 402.7 1.6e-120 1 No_clan
Cotton_A_38242_CDS 22 310 22 312 PF08449.11 UAA Family 1 300 302 273.2 2.6e-81 1 CL0184
Cotton_A_26379_CDS 89 143 83 146 PF14111.6 DUF4283 Domain 54 108 145 31.8 8.7e-08 1 No_clan
Cotton_A_07646_CDS 122 279 120 279 PF04678.13 MCU Family 3 176 176 161.8 1.7e-47 1 No_clan
Cotton_A_22323_CDS 97 241 96 241 PF00210.24 Ferritin Domain 2 142 142 116.8 7.1e-34 1 CL0044
Cotton_A_12355_CDS 18 116 16 124 PF00168.30 C2 Domain 3 95 103 35.5 9.7e-09 1 CL0154
Cotton_A_23245_CDS 11 83 9 83 PF01169.19 UPF0016 Family 3 75 75 74.7 5.4e-21 1 CL0292
Cotton_A_23245_CDS 146 219 145 219 PF01169.19 UPF0016 Family 2 75 75 76.1 2e-21 1 CL0292
Cotton_A_09595_CDS 167 219 166 219 PF11250.8 FAF Family 2 54 54 77.7 5.8e-22 1 No_clan
Cotton_A_23051_CDS 289 326 286 330 PF13920.6 zf-C3HC4_3 Domain 4 45 50 31.6 1.1e-07 1 CL0229
Cotton_A_35400_CDS 161 219 101 230 PF00102.27 Y_phosphatase Domain 144 202 235 22.4 7.7e-05 1 CL0031
Cotton_A_16932_CDS 5 69 1 71 PF12213.8 Dpoe2NT Domain 5 70 73 22.0 0.00015 1 CL0671
Cotton_A_16932_CDS 293 499 293 503 PF04042.16 DNA_pol_E_B Family 1 206 211 163.2 5.3e-48 1 CL0163
Cotton_A_25317_CDS 1 129 1 136 PF00067.22 p450 Domain 326 456 463 134.2 5.5e-39 1 No_clan
Cotton_A_27290_CDS 23 95 9 96 PF14368.6 LTP_2 Family 15 96 97 25.0 1.5e-05 1 CL0482
Cotton_A_07937_CDS 293 347 289 347 PF08711.11 Med26 Domain 2 53 53 53.3 2e-14 1 No_clan
Cotton_A_41258_CDS 229 275 229 275 PF01344.25 Kelch_1 Repeat 1 46 46 28.5 8.3e-07 1 CL0186
Cotton_A_41258_CDS 277 322 277 323 PF01344.25 Kelch_1 Repeat 1 45 46 31.6 9.1e-08 1 CL0186
Cotton_A_13431_CDS 14 37 14 37 PF01754.16 zf-A20 Family 1 24 24 49.7 2.5e-13 1 No_clan
Cotton_A_13431_CDS 108 144 108 145 PF01428.16 zf-AN1 Family 1 39 40 38.0 1.4e-09 1 No_clan
Cotton_A_20023_CDS 38 107 38 108 PF00076.22 RRM_1 Domain 1 69 70 59.2 2.7e-16 1 CL0221
Cotton_A_19451_CDS 39 306 38 313 PF00664.23 ABC_membrane Family 2 263 274 160.0 9.2e-47 1 CL0241
Cotton_A_19451_CDS 383 531 382 531 PF00005.27 ABC_tran Domain 2 137 137 118.3 3.4e-34 1 CL0023
Cotton_A_19451_CDS 689 955 687 961 PF00664.23 ABC_membrane Family 3 268 274 165.0 2.7e-48 1 CL0241
Cotton_A_19451_CDS 1028 1178 1028 1178 PF00005.27 ABC_tran Domain 1 137 137 120.0 1e-34 1 CL0023
Cotton_A_29695_CDS 63 254 62 259 PF01171.20 ATP_bind_3 Family 2 176 182 54.7 1e-14 1 CL0039
Cotton_A_29695_CDS 290 320 290 321 PF16503.5 zn-ribbon_14 Family 1 31 32 66.7 9.2e-19 1 No_clan
Cotton_A_02844_CDS 30 73 28 73 PF08263.12 LRRNT_2 Family 4 41 41 36.4 4.8e-09 1 No_clan
Cotton_A_02844_CDS 81 137 76 137 PF13855.6 LRR_8 Repeat 6 61 61 32.1 6.9e-08 1 CL0022
Cotton_A_02844_CDS 493 533 493 537 PF12799.7 LRR_4 Repeat 1 39 44 30.5 3.4e-07 1 CL0022
Cotton_A_02844_CDS 671 930 666 933 PF00069.25 Pkinase Domain 6 260 264 153.1 8.8e-45 1 CL0016
Cotton_A_18614_CDS 30 493 30 494 PF00067.22 p450 Domain 1 462 463 342.2 4.5e-102 1 No_clan
Cotton_A_31719_CDS 108 357 107 400 PF00481.21 PP2C Family 3 237 258 217.8 1.9e-64 1 CL0238
Cotton_A_05081_CDS 194 452 194 453 PF03000.14 NPH3 Family 1 257 258 297.3 1e-88 1 No_clan
Cotton_A_30049_CDS 166 198 160 198 PF13867.6 SAP30_Sin3_bdg Family 23 54 54 33.2 5e-08 1 No_clan
Cotton_A_22877_CDS 128 232 127 309 PF01926.23 MMR_HSR1 Family 2 84 114 50.2 2.3e-13 1 CL0023
Cotton_A_30282_CDS 141 432 139 441 PF03062.19 MBOAT Family 19 339 348 194.9 2.3e-57 1 CL0517
Cotton_A_04130_CDS 10 42 3 48 PF12776.7 Myb_DNA-bind_3 Domain 58 90 96 24.8 3.3e-05 1 CL0123
Cotton_A_07030_CDS 99 514 97 522 PF00854.21 PTR2 Family 3 387 395 237.3 2.5e-70 1 CL0015
Cotton_A_36779_CDS 272 305 271 306 PF13374.6 TPR_10 Repeat 8 41 42 16.5 0.0055 1 CL0020
Cotton_A_29150_CDS 68 217 66 231 PF04450.12 BSP Family 3 142 207 60.2 2.3e-16 1 CL0126
Cotton_A_30729_CDS 123 145 123 145 PF00560.33 LRR_1 Repeat 1 23 23 13.7 0.073 1 CL0022
Cotton_A_04141_CDS 130 179 130 179 PF07797.14 DUF1639 Family 1 50 50 77.9 4.1e-22 1 No_clan
Cotton_A_09191_CDS 311 394 307 394 PF04576.15 Zein-binding Family 9 92 92 103.2 7e-30 1 No_clan
Cotton_A_18861_CDS 251 334 251 334 PF01985.21 CRS1_YhbY Domain 1 84 84 73.3 1.4e-20 1 No_clan
Cotton_A_18861_CDS 369 452 369 452 PF01985.21 CRS1_YhbY Domain 1 84 84 50.8 1.4e-13 1 No_clan
Cotton_A_23827_CDS 76 274 75 275 PF00406.22 ADK Domain 2 150 151 125.4 2e-36 1 CL0023
Cotton_A_33577_CDS 67 138 64 145 PF01541.24 GIY-YIG Domain 4 71 78 45.9 5.2e-12 1 CL0418
Cotton_A_27942_CDS 1 60 1 60 PF08069.12 Ribosomal_S13_N Domain 1 60 60 110.8 2.3e-32 1 No_clan
Cotton_A_27942_CDS 74 134 70 140 PF00312.22 Ribosomal_S15 Domain 4 68 81 53.2 2.6e-14 1 CL0600
Cotton_A_24774_CDS 4 68 4 68 PF00226.31 DnaJ Domain 1 63 63 82.8 1.3e-23 1 CL0392
Cotton_A_24774_CDS 178 332 175 332 PF01556.18 DnaJ_C Domain 4 148 148 141.5 2.1e-41 1 No_clan
Cotton_A_10772_CDS 226 390 223 401 PF00852.19 Glyco_transf_10 Family 3 165 177 118.7 2.2e-34 1 CL0113
Cotton_A_16805_CDS 89 231 87 238 PF00106.25 adh_short Domain 3 141 195 72.5 3.1e-20 1 CL0063
Cotton_A_18786_CDS 16 511 13 513 PF00888.22 Cullin Family 4 478 618 447.4 8.7e-134 1 No_clan
Cotton_A_18786_CDS 511 586 509 588 PF00888.22 Cullin Family 505 581 618 71.0 7.7e-20 1 No_clan
Cotton_A_18786_CDS 605 667 605 667 PF10557.9 Cullin_Nedd8 Domain 1 63 63 90.0 7.3e-26 1 CL0123
Cotton_A_10599_CDS 72 318 65 325 PF00481.21 PP2C Family 16 245 258 125.7 2.4e-36 1 CL0238
Cotton_A_02225_CDS 33 383 33 383 PF12819.7 Malectin_like Domain 1 336 336 150.5 6.3e-44 1 CL0202
Cotton_A_02225_CDS 496 690 492 760 PF07714.17 Pkinase_Tyr Domain 6 205 259 163.3 6.4e-48 1 CL0016
Cotton_A_25333_CDS 39 179 38 180 PF03018.14 Dirigent Family 2 147 148 141.4 1.8e-41 1 CL0650
Cotton_A_23773_CDS 1 55 1 73 PF18052.1 Rx_N Domain 36 90 93 59.0 4.2e-16 1 No_clan
Cotton_A_01565_CDS 22 115 22 116 PF14363.6 AAA_assoc Family 1 95 96 57.1 1.7e-15 1 No_clan
Cotton_A_01565_CDS 226 356 225 357 PF00004.29 AAA Domain 2 131 132 63.6 2.3e-17 1 CL0023
Cotton_A_34168_CDS 133 294 133 294 PF03031.18 NIF Family 1 156 156 169.5 4.4e-50 1 CL0137
Cotton_A_21533_CDS 48 136 47 138 PF02362.21 B3 Family 2 99 101 62.0 3.8e-17 1 CL0405
Cotton_A_40455_CDS 188 260 188 261 PF00076.22 RRM_1 Domain 1 69 70 45.0 6.9e-12 1 CL0221
Cotton_A_19881_CDS 14 66 12 69 PF00403.26 HMA Domain 3 59 62 41.3 1.6e-10 1 No_clan
Cotton_A_01824_CDS 144 235 139 235 PF01554.18 MatE Family 72 161 161 44.4 1.3e-11 1 CL0222
Cotton_A_01824_CDS 294 441 292 452 PF01554.18 MatE Family 4 151 161 48.8 5.8e-13 1 CL0222
Cotton_A_21707_CDS 29 255 29 279 PF01370.21 Epimerase Family 1 218 241 25.0 1.1e-05 1 CL0063
Cotton_A_17453_CDS 75 231 75 233 PF00071.22 Ras Domain 1 160 162 168.3 1e-49 1 CL0023
Cotton_A_02815_CDS 61 114 59 115 PF00046.29 Homeodomain Domain 3 56 57 59.2 2.7e-16 1 CL0123
Cotton_A_02815_CDS 116 157 116 158 PF02183.18 HALZ Coiled-coil 1 42 43 49.8 2.9e-13 1 No_clan
Cotton_A_08969_CDS 274 316 274 317 PF13639.6 zf-RING_2 Domain 1 43 44 45.4 7.5e-12 1 CL0229
Cotton_A_32419_CDS 59 203 59 203 PF01565.23 FAD_binding_4 Domain 1 139 139 72.5 2.7e-20 1 CL0077
Cotton_A_32419_CDS 235 516 235 516 PF09265.10 Cytokin-bind Domain 1 281 281 401.9 1.5e-120 1 CL0277
Cotton_A_25727_CDS 14 208 11 209 PF05770.11 Ins134_P3_kin Domain 4 200 201 286.8 7.3e-86 1 CL0179
Cotton_A_09263_CDS 77 174 73 176 PF03070.16 TENA_THI-4 Family 15 115 210 31.6 1.3e-07 1 CL0230
Cotton_A_09263_CDS 196 282 189 287 PF03070.16 TENA_THI-4 Family 119 204 210 31.8 1.2e-07 1 CL0230
Cotton_A_26123_CDS 42 93 31 95 PF05922.16 Inhibitor_I9 Domain 16 67 82 31.1 2.7e-07 1 CL0570
Cotton_A_26123_CDS 172 327 108 330 PF00082.22 Peptidase_S8 Domain 149 296 298 45.9 4.3e-12 1 No_clan
Cotton_A_26123_CDS 385 474 382 474 PF17766.1 fn3_6 Domain 4 93 99 53.5 2.1e-14 1 CL0159
Cotton_A_19787_CDS 1 62 1 63 PF01781.18 Ribosomal_L38e Family 1 63 69 115.2 1.1e-33 1 No_clan
Cotton_A_08924_CDS 74 178 74 178 PF01453.24 B_lectin Domain 1 105 105 115.4 1.6e-33 1 No_clan
Cotton_A_08924_CDS 211 321 211 322 PF00954.20 S_locus_glycop Domain 1 110 111 108.5 2.4e-31 1 No_clan
Cotton_A_08924_CDS 353 410 343 410 PF08276.11 PAN_2 Domain 4 67 67 56.3 2.6e-15 1 CL0168
Cotton_A_08924_CDS 495 760 493 762 PF00069.25 Pkinase Domain 4 260 264 166.8 6e-49 1 CL0016
Cotton_A_14814_CDS 25 75 25 76 PF00847.20 AP2 Domain 1 53 54 51.1 1.2e-13 1 CL0081
Cotton_A_26428_CDS 66 196 63 199 PF01565.23 FAD_binding_4 Domain 4 131 139 69.4 2.5e-19 1 CL0077
Cotton_A_26428_CDS 396 533 392 534 PF04030.14 ALO Family 127 259 260 43.0 4.8e-11 1 CL0277
Cotton_A_00835_CDS 36 424 34 425 PF01490.18 Aa_trans Family 4 408 409 255.8 5.7e-76 1 CL0062
Cotton_A_00046_CDS 43 106 42 108 PF10601.9 zf-LITAF-like Family 2 68 70 49.3 4.3e-13 1 No_clan
Cotton_A_22076_CDS 43 92 42 93 PF00847.20 AP2 Domain 2 53 54 50.8 1.4e-13 1 CL0081
Cotton_A_12582_CDS 8 192 7 192 PF00025.21 Arf Domain 2 175 175 219.5 1.9e-65 1 CL0023
Cotton_A_21827_CDS 258 319 258 319 PF04117.12 Mpv17_PMP22 Family 1 62 62 64.7 6.7e-18 1 No_clan
Cotton_A_23683_CDS 31 171 29 171 PF00134.23 Cyclin_N Domain 5 127 127 70.2 1.3e-19 1 CL0065
Cotton_A_08125_CDS 83 344 83 344 PF08323.11 Glyco_transf_5 Domain 1 244 244 241.0 1.4e-71 1 CL0113
Cotton_A_08125_CDS 396 521 392 559 PF00534.20 Glycos_transf_1 Family 12 140 172 55.1 6.2e-15 1 CL0113
Cotton_A_00748_CDS 10 177 10 178 PF00071.22 Ras Domain 1 161 162 190.3 1.7e-56 1 CL0023
Cotton_A_30822_CDS 12 232 10 232 PF07059.12 DUF1336 Family 18 229 229 153.5 8.9e-45 1 No_clan
Cotton_A_14916_CDS 153 437 153 437 PF00069.25 Pkinase Domain 1 264 264 227.6 1.7e-67 1 CL0016
Cotton_A_06131_CDS 9 182 8 182 PF01145.25 Band_7 Family 2 178 178 95.4 3.8e-27 1 CL0433
Cotton_A_10525_CDS 235 282 230 294 PF00170.21 bZIP_1 Family 5 50 64 32.5 6.6e-08 1 CL0018
Cotton_A_08411_CDS 232 293 232 294 PF17035.5 BET Domain 1 63 64 67.2 1.1e-18 1 CL0665
Cotton_A_20965_CDS 28 81 28 103 PF04777.13 Evr1_Alr Family 1 57 100 57.1 1.9e-15 1 No_clan
Cotton_A_22836_CDS 16 221 16 221 PF00804.25 Syntaxin Domain 1 200 200 222.3 4.8e-66 1 CL0445
Cotton_A_22836_CDS 222 274 222 274 PF05739.19 SNARE Family 1 53 53 56.9 1.6e-15 1 No_clan
Cotton_A_16345_CDS 91 372 90 374 PF01406.19 tRNA-synt_1e Family 2 299 301 381.3 3.3e-114 1 CL0039
Cotton_A_16345_CDS 416 477 415 484 PF09190.11 DALR_2 Domain 2 56 63 25.6 1.3e-05 1 CL0258
Cotton_A_26416_CDS 5 107 4 107 PF03168.13 LEA_2 Domain 2 101 101 30.9 2.9e-07 1 CL0159
Cotton_A_18899_CDS 15 354 15 355 PF01070.18 FMN_dh Domain 1 347 348 431.0 3.1e-129 1 CL0036
Cotton_A_39273_CDS 14 73 14 73 PF00071.22 Ras Domain 1 60 162 76.9 1.3e-21 1 CL0023
Cotton_A_17805_CDS 50 126 49 130 PF03893.16 Lipase3_N Domain 2 72 76 65.6 3e-18 1 CL0028
Cotton_A_17805_CDS 184 322 183 325 PF01764.25 Lipase_3 Family 2 139 142 87.2 9.2e-25 1 CL0028
Cotton_A_37021_CDS 690 1035 682 1035 PF13086.6 AAA_11 Domain 4 261 261 231.8 1.1e-68 1 CL0023
Cotton_A_37021_CDS 1042 1239 1042 1240 PF13087.6 AAA_12 Domain 1 198 199 199.8 3.5e-59 1 CL0023
Cotton_A_10654_CDS 71 117 70 119 PF13041.6 PPR_2 Repeat 2 48 50 30.8 2.4e-07 1 CL0020
Cotton_A_10654_CDS 175 201 175 202 PF01535.20 PPR Family 1 27 31 21.2 0.00023 1 CL0020
Cotton_A_26481_CDS 197 319 196 327 PF01170.18 UPF0020 Domain 3 141 197 46.5 3.4e-12 1 CL0063
Cotton_A_10917_CDS 130 429 123 430 PF04484.12 QWRF Family 8 299 300 290.2 2.4e-86 1 No_clan
Cotton_A_07417_CDS 102 440 101 441 PF03016.15 Exostosin Family 2 299 300 272.1 5.5e-81 1 No_clan
Cotton_A_13730_CDS 130 302 125 303 PF03352.13 Adenine_glyco Family 4 176 177 217.7 9.4e-65 1 No_clan
Cotton_A_30079_CDS 184 240 184 241 PF03909.17 BSD Domain 1 57 58 29.5 5.3e-07 1 No_clan
Cotton_A_03585_CDS 8 28 6 29 PF13912.6 zf-C2H2_6 Domain 4 24 27 28.7 9.3e-07 1 CL0361
Cotton_A_03585_CDS 149 173 149 174 PF13912.6 zf-C2H2_6 Domain 1 25 27 33.5 2.9e-08 1 CL0361
Cotton_A_14569_CDS 34 114 34 114 PF02298.17 Cu_bind_like Domain 1 84 84 95.1 1.9e-27 1 CL0026
Cotton_A_01278_CDS 1 59 1 59 PF04783.12 DUF630 Family 1 59 59 82.4 1.8e-23 1 No_clan
Cotton_A_01278_CDS 295 600 295 601 PF04782.12 DUF632 Family 1 309 310 334.5 6.3e-100 1 No_clan
Cotton_A_16953_CDS 147 198 146 198 PF11250.8 FAF Family 2 54 54 75.2 3.5e-21 1 No_clan
Cotton_A_18290_CDS 41 126 41 126 PF03330.18 DPBB_1 Domain 1 83 83 78.2 4.3e-22 1 CL0199
Cotton_A_18290_CDS 137 215 137 215 PF01357.21 Pollen_allerg_1 Domain 1 80 80 87.0 6.4e-25 1 CL0159
Cotton_A_26384_CDS 83 285 82 351 PF00069.25 Pkinase Domain 2 199 264 156.8 6.7e-46 1 CL0016
Cotton_A_12112_CDS 18 84 11 88 PF14368.6 LTP_2 Family 6 75 97 25.5 1e-05 1 CL0482
Cotton_A_03593_CDS 29 87 28 94 PF08240.12 ADH_N Domain 2 61 109 34.5 1.5e-08 1 CL0296
Cotton_A_03593_CDS 152 276 152 281 PF00107.26 ADH_zinc_N Family 1 125 130 87.6 6.7e-25 1 CL0063
Cotton_A_36753_CDS 50 314 50 314 PF16499.5 Melibiase_2 Family 1 284 284 262.5 3.9e-78 1 CL0058
Cotton_A_36753_CDS 327 403 326 403 PF17801.1 Melibiase_C Domain 2 71 71 68.4 4.2e-19 1 CL0369
Cotton_A_18928_CDS 71 230 71 230 PF03446.15 NAD_binding_2 Domain 1 158 158 135.8 1.4e-39 1 CL0063
Cotton_A_18928_CDS 233 352 233 353 PF14833.6 NAD_binding_11 Domain 1 121 122 95.7 2.3e-27 1 CL0106
Cotton_A_37414_CDS 54 137 48 137 PF00428.19 Ribosomal_60s Family 14 88 88 67.7 9.8e-19 1 No_clan
Cotton_A_11983_CDS 3 85 1 86 PF03181.15 BURP Family 132 214 215 129.9 1e-37 1 No_clan
Cotton_A_34355_CDS 152 320 152 320 PF06925.11 MGDG_synth Family 1 169 169 205.3 6.7e-61 1 CL0113
Cotton_A_34355_CDS 380 445 346 506 PF04101.16 Glyco_tran_28_C Domain 32 97 167 36.2 5.7e-09 1 CL0113
Cotton_A_37880_CDS 36 148 35 151 PF07732.15 Cu-oxidase_3 Domain 2 116 119 132.8 5.8e-39 1 CL0026
Cotton_A_37880_CDS 163 310 161 311 PF00394.22 Cu-oxidase Domain 3 158 159 115.7 2.1e-33 1 CL0026
Cotton_A_37880_CDS 417 549 416 551 PF07731.14 Cu-oxidase_2 Domain 2 135 137 123.4 5.3e-36 1 CL0026
Cotton_A_31608_CDS 81 291 17 293 PF00657.22 Lipase_GDSL Family 48 198 200 43.2 4.1e-11 1 CL0264
Cotton_A_00092_CDS 23 396 23 397 PF00282.19 Pyridoxal_deC Domain 1 374 375 387.6 4.5e-116 1 CL0061
Cotton_A_02660_CDS 77 168 77 168 PF13837.6 Myb_DNA-bind_4 Domain 1 90 90 87.8 4.6e-25 1 CL0123
Cotton_A_12335_CDS 13 354 13 356 PF01070.18 FMN_dh Domain 1 346 348 461.5 1.6e-138 1 CL0036
Cotton_A_19924_CDS 101 236 100 264 PF12706.7 Lactamase_B_2 Domain 2 144 201 43.5 2.5e-11 1 CL0381
Cotton_A_19924_CDS 430 463 426 482 PF07521.12 RMMBL Motif 7 40 62 26.2 5.4e-06 1 CL0398
Cotton_A_19924_CDS 776 842 776 856 PF13837.6 Myb_DNA-bind_4 Domain 1 71 90 51.6 9.1e-14 1 CL0123
Cotton_A_03137_CDS 1 55 1 55 PF05251.12 Ost5 Family 19 73 73 72.9 1.9e-20 1 No_clan
Cotton_A_03595_CDS 26 366 25 372 PF00083.24 Sugar_tr Family 2 335 452 269.1 6.8e-80 1 CL0015
Cotton_A_11039_CDS 89 134 89 136 PF00646.33 F-box Domain 1 46 48 36.9 2.2e-09 1 CL0271
Cotton_A_16751_CDS 56 159 25 162 PF07690.16 MFS_1 Family 15 119 353 36.9 1.9e-09 1 CL0015
Cotton_A_16751_CDS 197 445 177 450 PF07690.16 MFS_1 Family 120 344 353 47.8 9.2e-13 1 CL0015
Cotton_A_16686_CDS 8 163 8 163 PF08694.11 UFC1 Domain 1 155 155 277.6 2e-83 1 CL0208
Cotton_A_29577_CDS 84 163 83 163 PF03330.18 DPBB_1 Domain 2 83 83 61.3 8.2e-17 1 CL0199
Cotton_A_29577_CDS 175 258 175 258 PF01357.21 Pollen_allerg_1 Domain 1 79 80 86.9 7e-25 1 CL0159
Cotton_A_01199_CDS 262 340 261 341 PF00564.24 PB1 Domain 2 83 84 50.7 1.3e-13 1 CL0072
Cotton_A_11564_CDS 33 360 33 361 PF00657.22 Lipase_GDSL Family 1 199 200 91.3 7.9e-26 1 CL0264
Cotton_A_24968_CDS 20 93 20 125 PF14226.6 DIOX_N Family 1 78 118 43.0 6.7e-11 1 CL0029
Cotton_A_03538_CDS 27 104 27 104 PF14569.6 zf-UDP Domain 1 78 78 141.9 5e-42 1 CL0229
Cotton_A_03538_CDS 334 1036 334 1039 PF03552.14 Cellulose_synt Family 1 719 722 1331.7 0 1 CL0110
Cotton_A_33522_CDS 82 168 79 170 PF01649.18 Ribosomal_S20p Family 4 80 82 72.1 4.5e-20 1 No_clan
Cotton_A_19446_CDS 119 307 119 308 PF03602.15 Cons_hypoth95 Family 1 181 182 153.7 3.9e-45 1 CL0063
Cotton_A_25544_CDS 122 178 122 179 PF04844.13 Ovate Family 1 57 58 80.3 7.3e-23 1 No_clan
Cotton_A_02960_CDS 180 211 179 212 PF13181.6 TPR_8 Repeat 2 33 34 18.2 0.0019 1 CL0020
Cotton_A_12201_CDS 1 73 1 76 PF02798.20 GST_N Domain 1 73 76 63.9 1.3e-17 1 CL0172
Cotton_A_12201_CDS 109 202 107 203 PF00043.25 GST_C Domain 3 92 93 50.5 1.8e-13 1 CL0497
Cotton_A_09222_CDS 17 138 17 139 PF03463.15 eRF1_1 Domain 1 128 129 71.8 5.1e-20 1 CL0267
Cotton_A_09222_CDS 144 277 144 278 PF03464.15 eRF1_2 Domain 1 132 133 145.7 9.2e-43 1 CL0267
Cotton_A_09222_CDS 281 418 281 418 PF03465.15 eRF1_3 Domain 1 113 113 123.1 7.2e-36 1 CL0101
Cotton_A_40576_CDS 8 109 1 110 PF00125.24 Histone Domain 26 130 131 79.0 3.8e-22 1 CL0012
Cotton_A_30361_CDS 2 116 1 116 PF00416.22 Ribosomal_S13 Family 15 128 128 177.6 1.3e-52 1 CL0303
Cotton_A_16755_CDS 116 272 115 273 PF02182.17 SAD_SRA Domain 2 156 157 119.4 1.1e-34 1 CL0178
Cotton_A_15496_CDS 40 225 39 225 PF05193.21 Peptidase_M16_C Domain 2 183 183 126.1 1.5e-36 1 CL0094
Cotton_A_00500_CDS 70 487 68 487 PF00709.21 Adenylsucc_synt Domain 3 419 419 572.3 5.9e-172 1 CL0023
Cotton_A_11826_CDS 9 87 9 97 PF14226.6 DIOX_N Family 1 76 118 38.2 2e-09 1 CL0029
Cotton_A_11826_CDS 165 260 158 263 PF03171.20 2OG-FeII_Oxy Domain 9 98 101 67.1 1.6e-18 1 CL0029
Cotton_A_18081_CDS 28 355 28 356 PF12819.7 Malectin_like Domain 1 335 336 353.1 1.5e-105 1 CL0202
Cotton_A_18081_CDS 414 470 410 470 PF13855.6 LRR_8 Repeat 5 61 61 33.9 1.9e-08 1 CL0022
Cotton_A_18081_CDS 569 831 568 836 PF07714.17 Pkinase_Tyr Domain 3 254 259 169.6 7.7e-50 1 CL0016
Cotton_A_27187_CDS 60 206 59 207 PF00190.22 Cupin_1 Domain 2 150 151 174.5 1e-51 1 CL0029
Cotton_A_07891_CDS 31 90 18 92 PF00240.23 ubiquitin Domain 13 70 72 25.8 6.5e-06 1 CL0072
Cotton_A_07891_CDS 150 216 149 216 PF10260.9 SAYSvFN Domain 2 70 70 84.7 2.9e-24 1 No_clan
Cotton_A_08537_CDS 36 91 36 91 PF01849.18 NAC Family 1 57 57 68.9 2.6e-19 1 No_clan
Cotton_A_07036_CDS 132 235 132 235 PF03168.13 LEA_2 Domain 1 101 101 58.5 7.6e-16 1 CL0159
Cotton_A_11283_CDS 79 124 77 125 PF00010.26 HLH Domain 4 52 53 40.5 1.9e-10 1 No_clan
Cotton_A_28625_CDS 21 72 20 72 PF00847.20 AP2 Domain 2 54 54 51.2 1.1e-13 1 CL0081
Cotton_A_31519_CDS 18 166 16 169 PF00596.21 Aldolase_II Domain 39 175 186 88.0 7.2e-25 1 No_clan
Cotton_A_03007_CDS 138 304 69 314 PF00566.18 RabGAP-TBC Family 27 193 215 124.7 3.8e-36 1 No_clan
Cotton_A_11955_CDS 20 65 18 67 PF13041.6 PPR_2 Repeat 6 48 50 30.1 3.9e-07 1 CL0020
Cotton_A_11955_CDS 92 124 92 125 PF12854.7 PPR_1 Repeat 1 33 34 27.0 2.5e-06 1 CL0020
Cotton_A_11955_CDS 132 180 132 181 PF13041.6 PPR_2 Repeat 1 49 50 42.0 7.7e-11 1 CL0020
Cotton_A_11955_CDS 203 229 200 231 PF12854.7 PPR_1 Repeat 6 32 34 27.8 1.5e-06 1 CL0020
Cotton_A_20458_CDS 32 64 32 64 PF06376.12 AGP Family 1 36 36 62.4 2.5e-17 1 No_clan
Cotton_A_16991_CDS 152 183 150 183 PF06200.14 tify Domain 3 34 34 47.2 9.5e-13 1 No_clan
Cotton_A_11310_CDS 240 291 239 291 PF05739.19 SNARE Family 2 53 53 39.6 3.9e-10 1 No_clan
Cotton_A_06071_CDS 131 232 131 233 PF02362.21 B3 Family 1 100 101 73.5 9.9e-21 1 CL0405
Cotton_A_06071_CDS 257 340 257 340 PF06507.13 Auxin_resp Family 1 83 83 118.4 1.2e-34 1 No_clan
Cotton_A_06071_CDS 986 1072 952 1077 PF02309.16 AUX_IAA Family 125 231 237 28.9 9.4e-07 1 CL0072
Cotton_A_19967_CDS 292 325 288 326 PF00400.32 WD40 Repeat 5 37 38 13.6 0.095 1 CL0186
Cotton_A_30602_CDS 163 314 163 314 PF13365.6 Trypsin_2 Domain 1 150 150 104.7 7.8e-30 1 CL0124
Cotton_A_30602_CDS 371 450 360 451 PF13180.6 PDZ_2 Domain 13 81 82 45.4 7.6e-12 1 CL0466
Cotton_A_36987_CDS 306 352 302 391 PF01429.19 MBD Domain 9 55 77 26.0 5.4e-06 1 CL0081
Cotton_A_19524_CDS 48 195 36 258 PF13347.6 MFS_2 Family 15 152 427 46.3 2.1e-12 1 CL0015
Cotton_A_22804_CDS 68 123 63 123 PF04640.14 PLATZ Family 23 82 82 59.0 5.4e-16 1 No_clan
Cotton_A_18276_CDS 44 703 43 704 PF03169.15 OPT Family 2 615 616 574.4 3.1e-172 1 No_clan
Cotton_A_13015_CDS 1 28 1 33 PF04419.14 4F5 Family 1 32 38 23.5 7.7e-05 1 CL0361
Cotton_A_13015_CDS 36 57 35 58 PF12874.7 zf-met Domain 2 23 25 22.2 0.00013 1 CL0361
Cotton_A_20468_CDS 107 287 107 288 PF00390.19 malic Domain 1 181 182 261.1 4.8e-78 1 CL0603
Cotton_A_20468_CDS 298 551 298 551 PF03949.15 Malic_M Domain 1 258 258 323.2 1e-96 1 CL0063
Cotton_A_03614_CDS 43 286 43 287 PF09749.9 HVSL Family 1 237 238 176.9 4.6e-52 1 CL0247
Cotton_A_18588_CDS 13 371 13 371 PF04371.15 PAD_porph Family 1 319 319 432.9 7.5e-130 1 CL0197
Cotton_A_29798_CDS 146 1013 144 1013 PF05904.11 DUF863 Family 3 938 938 403.8 2.2e-120 1 No_clan
Cotton_A_27620_CDS 13 291 11 291 PF00069.25 Pkinase Domain 3 264 264 236.2 4.1e-70 1 CL0016
Cotton_A_11529_CDS 5 177 5 177 PF00025.21 Arf Domain 1 175 175 267.6 3.4e-80 1 CL0023
Cotton_A_14445_CDS 83 179 82 184 PF01694.22 Rhomboid Family 2 100 150 89.1 2.8e-25 1 CL0207
Cotton_A_36541_CDS 16 82 16 83 PF01781.18 Ribosomal_L38e Family 1 68 69 117.6 1.9e-34 1 No_clan
Cotton_A_04194_CDS 87 461 86 473 PF00899.21 ThiF Domain 2 223 244 104.5 5.6e-30 1 CL0063
Cotton_A_04194_CDS 260 331 260 331 PF16190.5 E1_FCCH Domain 1 71 71 91.3 3.1e-26 1 No_clan
Cotton_A_04194_CDS 332 401 332 401 PF16191.5 E1_4HB Domain 1 70 70 80.1 9.8e-23 1 No_clan
Cotton_A_04194_CDS 483 983 483 988 PF00899.21 ThiF Domain 1 239 244 252.3 4e-75 1 CL0063
Cotton_A_04194_CDS 670 923 670 923 PF10585.9 UBA_e1_thiolCys Domain 1 252 252 277.0 1.9e-82 1 No_clan
Cotton_A_04194_CDS 994 1083 994 1083 PF09358.10 E1_UFD Domain 1 93 93 76.0 2.9e-21 1 No_clan
Cotton_A_37347_CDS 190 370 190 370 PF00270.29 DEAD Domain 1 176 176 173.7 2.9e-51 1 CL0023
Cotton_A_37347_CDS 405 520 404 520 PF00271.31 Helicase_C Family 2 111 111 103.0 1.1e-29 1 CL0023
Cotton_A_24491_CDS 20 112 18 112 PF03732.17 Retrotrans_gag Family 3 96 96 53.6 2.1e-14 1 CL0523
Cotton_A_13803_CDS 209 286 209 293 PF00565.17 SNase Domain 1 86 108 74.4 8.7e-21 1 CL0049
Cotton_A_19596_CDS 5 251 5 253 PF13714.6 PEP_mutase Domain 1 237 239 175.4 1.2e-51 1 CL0151
Cotton_A_04714_CDS 32 227 28 227 PF05757.11 PsbQ Family 4 200 200 278.5 3e-83 1 No_clan
Cotton_A_12507_CDS 6 47 5 51 PF00646.33 F-box Domain 3 44 48 32.9 4.2e-08 1 CL0271
Cotton_A_08546_CDS 10 78 10 78 PF00226.31 DnaJ Domain 1 63 63 72.7 2e-20 1 CL0392
Cotton_A_08087_CDS 140 398 133 398 PF00481.21 PP2C Family 8 258 258 218.4 1.2e-64 1 CL0238
Cotton_A_20797_CDS 45 132 45 133 PF06749.12 DUF1218 Family 1 90 91 76.2 2.2e-21 1 No_clan
Cotton_A_02901_CDS 19 58 17 63 PF00646.33 F-box Domain 3 42 48 26.9 3.1e-06 1 CL0271
Cotton_A_10620_CDS 262 317 262 317 PF17820.1 PDZ_6 Domain 1 56 56 46.8 2e-12 1 CL0466
Cotton_A_10620_CDS 352 513 352 515 PF03572.18 Peptidase_S41 Family 1 164 166 165.4 7.8e-49 1 CL0127
Cotton_A_05584_CDS 154 237 137 237 PF00133.22 tRNA-synt_1 Family 519 602 602 99.5 1.5e-28 1 CL0039
Cotton_A_12210_CDS 1 171 1 171 PF14009.6 DUF4228 Family 1 179 179 111.3 6.6e-32 1 No_clan
Cotton_A_22163_CDS 56 158 29 162 PF13967.6 RSN1_TM Family 44 151 156 51.1 1.2e-13 1 No_clan
Cotton_A_22163_CDS 190 384 189 385 PF14703.6 PHM7_cyt Domain 2 175 176 45.7 8.1e-12 1 CL0221
Cotton_A_22163_CDS 396 581 396 597 PF02714.15 RSN1_7TM Family 1 172 274 50.8 1.4e-13 1 CL0416
Cotton_A_22163_CDS 648 735 640 735 PF02714.15 RSN1_7TM Family 190 274 274 51.7 7.6e-14 1 CL0416
Cotton_A_38975_CDS 11 108 10 109 PF01657.17 Stress-antifung Family 2 94 95 61.3 1.1e-16 1 No_clan
Cotton_A_38975_CDS 135 221 124 222 PF01657.17 Stress-antifung Family 13 93 95 40.7 2.8e-10 1 No_clan
Cotton_A_07041_CDS 299 353 299 354 PF05383.17 La Domain 1 57 59 73.4 1.1e-20 1 CL0123
Cotton_A_00706_CDS 45 79 41 79 PF00400.32 WD40 Repeat 5 38 38 21.5 0.00031 1 CL0186
Cotton_A_00706_CDS 84 121 83 121 PF00400.32 WD40 Repeat 2 38 38 33.4 5.4e-08 1 CL0186
Cotton_A_00706_CDS 126 163 125 163 PF00400.32 WD40 Repeat 2 38 38 31.8 1.7e-07 1 CL0186
Cotton_A_00706_CDS 198 231 195 232 PF00400.32 WD40 Repeat 5 37 38 20.8 0.00051 1 CL0186
Cotton_A_00706_CDS 241 276 238 276 PF00400.32 WD40 Repeat 4 38 38 24.5 3.5e-05 1 CL0186
Cotton_A_00706_CDS 340 767 337 768 PF04053.14 Coatomer_WDAD Family 4 444 445 441.0 5.2e-132 1 CL0186
Cotton_A_00706_CDS 814 1213 814 1213 PF06957.11 COPI_C Family 1 403 403 571.7 7.3e-172 1 CL0020
Cotton_A_06484_CDS 156 259 153 261 PF00651.31 BTB Domain 4 109 111 81.0 6.9e-23 1 CL0033
Cotton_A_38333_CDS 51 238 51 241 PF01195.19 Pept_tRNA_hydro Domain 1 168 171 160.8 2.9e-47 1 No_clan
Cotton_A_00669_CDS 15 93 5 94 PF02519.14 Auxin_inducible Family 12 89 90 94.4 3.5e-27 1 No_clan
Cotton_A_00979_CDS 13 116 12 123 PF03226.14 Yippee-Mis18 Domain 2 90 105 55.6 4.9e-15 1 CL0080
Cotton_A_39886_CDS 23 138 7 142 PF03004.14 Transposase_24 Family 16 138 142 55.5 6.5e-15 1 No_clan
Cotton_A_29129_CDS 58 172 52 175 PF13456.6 RVT_3 Domain 8 121 124 33.3 3.5e-08 1 CL0219
Cotton_A_01697_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 56.5 2.4e-15 1 CL0123
Cotton_A_01697_CDS 67 112 67 112 PF00249.31 Myb_DNA-binding Domain 1 46 46 53.1 2.6e-14 1 CL0123
Cotton_A_12544_CDS 10 387 9 389 PF01238.21 PMI_typeI Family 2 370 373 357.1 1.1e-106 1 CL0029
Cotton_A_03837_CDS 11 117 2 118 PF00134.23 Cyclin_N Domain 22 126 127 72.2 3.1e-20 1 CL0065
Cotton_A_03837_CDS 120 219 120 241 PF02984.19 Cyclin_C Domain 1 94 119 27.8 2.1e-06 1 CL0065
Cotton_A_32362_CDS 42 277 40 279 PF00141.23 peroxidase Domain 3 226 229 252.5 3.8e-75 1 CL0617
Cotton_A_02464_CDS 46 143 44 144 PF00254.28 FKBP_C Domain 3 93 94 46.8 2.9e-12 1 CL0487
Cotton_A_02464_CDS 174 258 168 258 PF00254.28 FKBP_C Domain 7 94 94 25.0 1.7e-05 1 CL0487
Cotton_A_02464_CDS 293 381 289 381 PF00254.28 FKBP_C Domain 9 94 94 56.6 2.5e-15 1 CL0487
Cotton_A_02464_CDS 484 515 484 517 PF00515.28 TPR_1 Repeat 1 32 34 28.0 1.2e-06 1 CL0020
Cotton_A_29288_CDS 149 382 145 385 PF00931.22 NB-ARC Domain 5 249 252 173.3 4.9e-51 1 CL0023
Cotton_A_29288_CDS 525 580 523 581 PF13855.6 LRR_8 Repeat 3 59 61 36.0 4.2e-09 1 CL0022
Cotton_A_19015_CDS 93 468 87 468 PF00450.22 Peptidase_S10 Domain 7 394 419 374.0 1.3e-111 1 CL0028
Cotton_A_27490_CDS 109 309 108 309 PF03407.16 Nucleotid_trans Family 2 212 212 186.6 5.6e-55 1 CL0110
Cotton_A_35699_CDS 6 87 1 87 PF01425.21 Amidase Family 369 451 451 61.8 5.8e-17 1 No_clan
Cotton_A_23019_CDS 81 115 80 116 PF00400.32 WD40 Repeat 4 37 38 28.3 2.1e-06 1 CL0186
Cotton_A_23019_CDS 290 325 288 325 PF00400.32 WD40 Repeat 4 38 38 32.3 1.2e-07 1 CL0186
Cotton_A_38085_CDS 81 188 81 191 PF05911.11 FPP Coiled-coil 1 108 867 127.7 4.5e-37 1 No_clan
Cotton_A_38085_CDS 179 268 176 270 PF05911.11 FPP Coiled-coil 123 211 867 66.0 2.1e-18 1 No_clan
Cotton_A_38085_CDS 314 368 287 377 PF05911.11 FPP Coiled-coil 349 407 867 51.8 4e-14 1 No_clan
Cotton_A_38085_CDS 402 580 377 585 PF05911.11 FPP Coiled-coil 690 861 867 83.0 1.5e-23 1 No_clan
Cotton_A_02694_CDS 198 306 197 308 PF00168.30 C2 Domain 2 101 103 29.6 6.4e-07 1 CL0154
Cotton_A_02694_CDS 363 471 363 473 PF00168.30 C2 Domain 1 101 103 29.7 6.1e-07 1 CL0154
Cotton_A_02694_CDS 525 636 525 636 PF00168.30 C2 Domain 1 103 103 81.3 5.1e-23 1 CL0154
Cotton_A_02694_CDS 783 937 782 937 PF08372.10 PRT_C Family 2 156 156 230.6 6.9e-69 1 CL0484
Cotton_A_27470_CDS 31 103 30 104 PF13656.6 RNA_pol_L_2 Domain 2 74 75 88.7 1.6e-25 1 CL0509
Cotton_A_30062_CDS 13 266 12 266 PF00069.25 Pkinase Domain 2 264 264 248.7 6e-74 1 CL0016
Cotton_A_30062_CDS 322 380 322 381 PF03822.14 NAF Domain 1 53 54 76.8 1.1e-21 1 CL0573
Cotton_A_10352_CDS 1 114 1 115 PF03759.13 PRONE Family 65 182 363 154.4 3.5e-45 1 No_clan
Cotton_A_10352_CDS 110 257 109 258 PF03759.13 PRONE Family 206 362 363 206.3 5.8e-61 1 No_clan
Cotton_A_08895_CDS 84 159 81 159 PF00257.19 Dehydrin Family 94 164 164 97.2 1.4e-27 1 No_clan
Cotton_A_38829_CDS 182 485 179 486 PF08318.12 COG4 Domain 4 334 335 243.0 4.3e-72 1 CL0294
Cotton_A_38829_CDS 557 702 522 732 PF04437.13 RINT1_TIP1 Family 318 458 499 32.6 3.9e-08 1 No_clan
Cotton_A_17375_CDS 158 431 154 433 PF00069.25 Pkinase Domain 6 260 264 152.5 1.4e-44 1 CL0016
Cotton_A_06733_CDS 3 654 3 657 PF00012.20 HSP70 Family 1 596 599 502.5 1.3e-150 1 CL0108
Cotton_A_12403_CDS 7 56 2 68 PF14569.6 zf-UDP Domain 9 58 78 61.4 6.6e-17 1 CL0229
Cotton_A_24397_CDS 85 265 82 265 PF01885.16 PTS_2-RNA Family 4 181 181 217.8 1.1e-64 1 CL0084
Cotton_A_37222_CDS 35 84 34 84 PF08263.12 LRRNT_2 Family 2 41 41 37.7 1.9e-09 1 No_clan
Cotton_A_37222_CDS 283 343 283 343 PF13855.6 LRR_8 Repeat 1 61 61 35.1 8e-09 1 CL0022
Cotton_A_37222_CDS 576 634 575 635 PF13855.6 LRR_8 Repeat 2 60 61 36.5 3e-09 1 CL0022
Cotton_A_37222_CDS 777 796 777 798 PF00560.33 LRR_1 Repeat 1 20 23 10.7 0.69 1 CL0022
Cotton_A_08437_CDS 10 106 10 108 PF03195.14 LOB Family 1 97 99 143.7 2.1e-42 1 No_clan
Cotton_A_29456_CDS 1 117 1 118 PF00573.22 Ribosomal_L4 Family 73 191 192 95.8 2.6e-27 1 No_clan
Cotton_A_24901_CDS 286 453 285 456 PF00270.29 DEAD Domain 2 173 176 66.2 2.9e-18 1 CL0023
Cotton_A_24901_CDS 491 569 457 570 PF00271.31 Helicase_C Family 36 110 111 46.9 3e-12 1 CL0023
Cotton_A_19581_CDS 36 91 35 123 PF13947.6 GUB_WAK_bind Domain 2 57 106 56.9 2.9e-15 1 No_clan
Cotton_A_19581_CDS 161 369 161 397 PF00069.25 Pkinase Domain 1 204 264 156.7 7.3e-46 1 CL0016
Cotton_A_06386_CDS 167 348 162 349 PF00574.23 CLP_protease Domain 10 181 182 134.9 2.7e-39 1 CL0127
Cotton_A_28011_CDS 30 79 30 79 PF03540.13 TFIID_30kDa Family 1 50 50 84.6 3.2e-24 1 CL0012
Cotton_A_09629_CDS 22 69 22 69 PF00249.31 Myb_DNA-binding Domain 1 46 46 57.0 1.6e-15 1 CL0123
Cotton_A_09629_CDS 75 118 75 120 PF00249.31 Myb_DNA-binding Domain 1 44 46 54.1 1.2e-14 1 CL0123
Cotton_A_28963_CDS 4 108 3 110 PF02458.15 Transferase Family 59 166 434 90.2 1.1e-25 1 CL0149
Cotton_A_04565_CDS 89 213 25 220 PF00657.22 Lipase_GDSL Family 71 174 200 35.9 7.1e-09 1 CL0264
Cotton_A_09916_CDS 14 157 1 162 PF00067.22 p450 Domain 118 266 463 28.7 5.6e-07 1 No_clan
Cotton_A_09916_CDS 200 390 197 395 PF00067.22 p450 Domain 269 458 463 220.6 3.4e-65 1 No_clan
Cotton_A_39400_CDS 139 258 125 260 PF00782.20 DSPc Domain 17 131 133 54.3 1.2e-14 1 CL0031
Cotton_A_39400_CDS 354 488 332 488 PF01331.19 mRNA_cap_enzyme Domain 67 195 195 153.5 5.7e-45 1 CL0078
Cotton_A_39400_CDS 504 588 485 588 PF03919.15 mRNA_cap_C Domain 33 108 108 69.5 3.4e-19 1 CL0021
Cotton_A_28604_CDS 1 67 1 67 PF11820.8 DUF3339 Family 1 67 67 101.3 2.4e-29 1 No_clan
Cotton_A_32756_CDS 44 142 4 143 PF00134.23 Cyclin_N Domain 34 126 127 77.2 8.9e-22 1 CL0065
Cotton_A_01997_CDS 25 79 16 97 PF00314.17 Thaumatin Domain 66 122 214 59.1 4.6e-16 1 CL0293
Cotton_A_14971_CDS 24 314 24 317 PF00248.21 Aldo_ket_red Domain 1 290 294 263.2 2.6e-78 1 No_clan
Cotton_A_15056_CDS 240 278 234 278 PF03106.15 WRKY Domain 21 59 59 49.0 5.1e-13 1 CL0274
Cotton_A_01193_CDS 134 402 134 404 PF00069.25 Pkinase Domain 1 260 264 161.3 2.8e-47 1 CL0016
Cotton_A_39621_CDS 1 435 1 436 PF02458.15 Transferase Family 1 433 434 228.4 1.3e-67 1 CL0149
Cotton_A_37669_CDS 232 358 232 359 PF00134.23 Cyclin_N Domain 1 126 127 152.4 4.7e-45 1 CL0065
Cotton_A_37669_CDS 361 479 361 481 PF02984.19 Cyclin_C Domain 1 115 119 112.7 1.1e-32 1 CL0065
Cotton_A_18175_CDS 30 243 30 243 PF00314.17 Thaumatin Domain 1 214 214 265.9 2.4e-79 1 CL0293
Cotton_A_27989_CDS 484 578 426 578 PF10513.9 EPL1 Family 77 157 157 46.6 4.6e-12 1 No_clan
Cotton_A_11465_CDS 44 207 1 212 PF02309.16 AUX_IAA Family 4 161 237 73.1 3e-20 1 CL0072
Cotton_A_11465_CDS 215 251 210 253 PF02309.16 AUX_IAA Family 192 228 237 38.7 1e-09 1 CL0072
Cotton_A_08731_CDS 3 320 1 321 PF04928.17 PAP_central Domain 16 247 248 156.5 5.7e-46 1 No_clan
Cotton_A_21418_CDS 314 730 314 730 PF07990.12 NABP Domain 1 388 388 513.1 6.7e-154 1 No_clan
Cotton_A_21418_CDS 732 761 731 764 PF00806.19 PUF Repeat 2 31 35 25.5 6.7e-06 1 CL0020
Cotton_A_21418_CDS 775 799 768 801 PF00806.19 PUF Repeat 9 33 35 26.4 3.4e-06 1 CL0020
Cotton_A_21418_CDS 803 833 803 837 PF00806.19 PUF Repeat 1 31 35 22.3 7e-05 1 CL0020
Cotton_A_21418_CDS 848 873 839 873 PF00806.19 PUF Repeat 10 35 35 28.4 7.9e-07 1 CL0020
Cotton_A_21418_CDS 876 906 875 907 PF00806.19 PUF Repeat 2 32 35 29.9 2.6e-07 1 CL0020
Cotton_A_21418_CDS 913 945 912 946 PF00806.19 PUF Repeat 2 34 35 28.2 9.2e-07 1 CL0020
Cotton_A_21418_CDS 949 981 948 982 PF00806.19 PUF Repeat 2 34 35 25.1 8.8e-06 1 CL0020
Cotton_A_21418_CDS 998 1024 995 1024 PF00806.19 PUF Repeat 9 35 35 29.2 4.5e-07 1 CL0020
Cotton_A_03178_CDS 17 66 16 67 PF00847.20 AP2 Domain 2 53 54 40.1 3.3e-10 1 CL0081
Cotton_A_31535_CDS 1 67 1 67 PF11820.8 DUF3339 Family 1 67 67 97.2 4.5e-28 1 No_clan
Cotton_A_12875_CDS 2 309 1 310 PF00291.25 PALP Family 3 293 294 203.7 4e-60 1 CL0063
Cotton_A_13132_CDS 44 463 44 478 PF00067.22 p450 Domain 1 441 463 250.2 3.5e-74 1 No_clan
Cotton_A_00441_CDS 43 300 43 300 PF00685.27 Sulfotransfer_1 Domain 1 267 267 205.8 8.1e-61 1 CL0023
Cotton_A_41189_CDS 11 122 7 124 PF00892.20 EamA Family 5 112 137 45.2 9.8e-12 1 CL0184
Cotton_A_29217_CDS 136 270 135 281 PF03004.14 Transposase_24 Family 2 140 142 62.7 3.8e-17 1 No_clan
Cotton_A_09983_CDS 111 252 109 253 PF01694.22 Rhomboid Family 3 149 150 144.6 2.2e-42 1 CL0207
Cotton_A_38309_CDS 104 231 104 231 PF01980.16 TrmO Family 1 119 119 151.1 1.4e-44 1 No_clan
Cotton_A_01696_CDS 156 174 155 179 PF05553.11 DUF761 Family 4 22 36 22.7 5.3e-05 1 No_clan
Cotton_A_31079_CDS 44 99 44 110 PF00076.22 RRM_1 Domain 1 55 70 44.2 1.3e-11 1 CL0221
Cotton_A_31079_CDS 132 194 132 200 PF00076.22 RRM_1 Domain 1 64 70 40.0 2.5e-10 1 CL0221
Cotton_A_06986_CDS 9 158 8 159 PF00179.26 UQ_con Domain 2 139 140 175.6 3.8e-52 1 CL0208
Cotton_A_08855_CDS 38 360 37 360 PF00180.20 Iso_dh Domain 2 348 348 270.6 2e-80 1 CL0270
Cotton_A_14356_CDS 83 172 81 172 PF02453.17 Reticulon Family 68 157 157 97.4 7.6e-28 1 CL0484
Cotton_A_40445_CDS 65 107 63 107 PF03107.16 C1_2 Domain 3 47 47 27.2 3.7e-06 1 CL0006
Cotton_A_40445_CDS 118 163 117 164 PF03107.16 C1_2 Domain 2 46 47 31.9 1.2e-07 1 CL0006
Cotton_A_40445_CDS 175 225 174 225 PF03107.16 C1_2 Domain 2 47 47 34.1 2.5e-08 1 CL0006
Cotton_A_14493_CDS 51 89 51 89 PF00400.32 WD40 Repeat 1 38 38 25.8 1.3e-05 1 CL0186
Cotton_A_14493_CDS 94 130 93 130 PF00400.32 WD40 Repeat 2 38 38 17.5 0.0058 1 CL0186
Cotton_A_14493_CDS 180 214 178 214 PF00400.32 WD40 Repeat 3 38 38 14.7 0.042 1 CL0186
Cotton_A_14493_CDS 266 297 260 298 PF00400.32 WD40 Repeat 7 37 38 32.4 1.1e-07 1 CL0186
Cotton_A_02288_CDS 56 283 30 283 PF01201.22 Ribosomal_S8e Family 3 137 137 161.3 1.4e-47 1 No_clan
Cotton_A_32223_CDS 36 93 13 96 PF00179.26 UQ_con Domain 69 125 140 61.9 4.9e-17 1 CL0208
Cotton_A_06382_CDS 64 129 45 130 PF04777.13 Evr1_Alr Family 30 99 100 62.6 3.7e-17 1 No_clan
Cotton_A_03230_CDS 35 147 35 147 PF05938.11 Self-incomp_S1 Family 1 104 104 90.8 7e-26 1 No_clan
Cotton_A_24669_CDS 29 166 24 166 PF06232.11 ATS3 Domain 7 125 125 146.9 2.6e-43 1 CL0321
Cotton_A_30607_CDS 28 80 27 81 PF04770.12 ZF-HD_dimer Family 2 54 55 106.6 5.7e-31 1 No_clan
Cotton_A_20387_CDS 28 286 27 291 PF00704.28 Glyco_hydro_18 Domain 2 267 312 106.1 2.9e-30 1 CL0058
Cotton_A_27959_CDS 16 57 16 57 PF00010.26 HLH Domain 14 53 53 24.3 2.3e-05 1 No_clan
Cotton_A_30370_CDS 33 169 32 172 PF04043.15 PMEI Domain 2 148 154 50.3 3.1e-13 1 No_clan
Cotton_A_22751_CDS 5 56 5 57 PF00249.31 Myb_DNA-binding Domain 1 45 46 34.7 1.5e-08 1 CL0123
Cotton_A_22751_CDS 123 180 120 185 PF00538.19 Linker_histone Domain 5 64 74 39.1 7.3e-10 1 CL0123
Cotton_A_18547_CDS 233 318 233 318 PF08142.12 AARP2CN Domain 1 86 86 104.6 2.2e-30 1 No_clan
Cotton_A_08141_CDS 51 369 50 369 PF03690.13 UPF0160 Family 2 317 317 442.3 1.3e-132 1 No_clan
Cotton_A_28680_CDS 7 37 7 37 PF01535.20 PPR Family 1 31 31 25.3 1.2e-05 1 CL0020
Cotton_A_28680_CDS 105 151 105 154 PF13041.6 PPR_2 Repeat 1 47 50 37.1 2.6e-09 1 CL0020
Cotton_A_28680_CDS 276 301 274 303 PF01535.20 PPR Family 4 29 31 18.4 0.0018 1 CL0020
Cotton_A_28680_CDS 304 349 302 350 PF13041.6 PPR_2 Repeat 4 49 50 32.4 8e-08 1 CL0020
Cotton_A_28680_CDS 377 401 377 401 PF01535.20 PPR Family 4 28 31 12.5 0.14 1 CL0020
Cotton_A_28680_CDS 402 449 402 451 PF13041.6 PPR_2 Repeat 1 48 50 30.9 2.2e-07 1 CL0020
Cotton_A_18442_CDS 73 111 71 121 PF00170.21 bZIP_1 Family 3 41 64 31.9 1.1e-07 1 CL0018
Cotton_A_18442_CDS 161 236 160 236 PF14144.6 DOG1 Family 2 77 77 99.0 1.3e-28 1 No_clan
Cotton_A_30503_CDS 61 391 61 400 PF00295.17 Glyco_hydro_28 Domain 1 323 325 342.6 2.1e-102 1 CL0268
Cotton_A_02437_CDS 38 63 38 64 PF13912.6 zf-C2H2_6 Domain 1 26 27 36.4 3.6e-09 1 CL0361
Cotton_A_02437_CDS 87 110 86 111 PF13912.6 zf-C2H2_6 Domain 2 25 27 37.9 1.2e-09 1 CL0361
Cotton_A_21762_CDS 3 38 2 40 PF00646.33 F-box Domain 2 36 48 21.9 0.00011 1 CL0271
Cotton_A_21762_CDS 277 334 276 334 PF03478.18 DUF295 Domain 2 55 55 29.0 5.6e-07 1 No_clan
Cotton_A_37467_CDS 16 232 16 278 PF06090.12 Ins_P5_2-kin Family 1 195 332 170.1 8.4e-50 1 CL0016
Cotton_A_33353_CDS 26 208 24 209 PF00227.26 Proteasome Domain 3 189 190 106.0 1.7e-30 1 CL0052
Cotton_A_08567_CDS 104 147 103 147 PF13639.6 zf-RING_2 Domain 2 44 44 46.5 3.3e-12 1 CL0229
Cotton_A_17782_CDS 450 511 450 512 PF03121.15 Herpes_UL52 Family 1 74 75 59.2 2.8e-16 1 No_clan
Cotton_A_12237_CDS 11 68 6 69 PF13499.6 EF-hand_7 Domain 6 70 71 54.0 1.7e-14 1 CL0220
Cotton_A_30545_CDS 1 119 1 121 PF03140.15 DUF247 Family 277 395 397 108.9 3.4e-31 1 No_clan
Cotton_A_07811_CDS 53 126 16 126 PF12796.7 Ank_2 Repeat 24 83 83 41.8 1.2e-10 1 CL0465
Cotton_A_07811_CDS 276 296 273 297 PF00642.24 zf-CCCH Family 5 26 27 22.7 6.7e-05 1 CL0537
Cotton_A_37769_CDS 153 414 144 430 PF00862.19 Sucrose_synth Family 278 522 548 31.6 5.4e-08 1 CL0113
Cotton_A_37769_CDS 452 626 443 627 PF00534.20 Glycos_transf_1 Family 12 171 172 87.5 7.3e-25 1 CL0113
Cotton_A_37769_CDS 774 977 750 1002 PF05116.13 S6PP Family 25 207 247 47.1 2.1e-12 1 CL0137
Cotton_A_01353_CDS 48 319 47 322 PF00732.19 GMC_oxred_N Domain 2 293 296 95.8 2.8e-27 1 CL0063
Cotton_A_01353_CDS 398 543 398 545 PF05199.13 GMC_oxred_C Domain 1 142 144 101.7 4.9e-29 1 No_clan
Cotton_A_10122_CDS 484 558 450 560 PF07839.11 CaM_binding Domain 26 108 117 72.1 6.1e-20 1 No_clan
Cotton_A_20901_CDS 26 104 24 134 PF13947.6 GUB_WAK_bind Domain 4 79 106 27.5 4.1e-06 1 No_clan
Cotton_A_20901_CDS 301 345 301 345 PF13639.6 zf-RING_2 Domain 1 44 44 48.5 8.1e-13 1 CL0229
Cotton_A_30710_CDS 194 249 193 249 PF03106.15 WRKY Domain 2 59 59 91.4 3e-26 1 CL0274
Cotton_A_30710_CDS 385 441 384 441 PF03106.15 WRKY Domain 2 59 59 90.0 8.6e-26 1 CL0274
Cotton_A_10604_CDS 186 207 170 210 PF04434.17 SWIM Domain 16 37 40 31.1 1.3e-07 1 No_clan
Cotton_A_00714_CDS 106 140 105 144 PF00076.22 RRM_1 Domain 2 41 70 20.9 0.00023 1 CL0221
Cotton_A_16090_CDS 36 161 36 164 PF00072.24 Response_reg Domain 1 109 112 71.7 5.1e-20 1 CL0304
Cotton_A_00350_CDS 8 457 4 459 PF05056.12 DUF674 Family 5 447 449 376.2 2.3e-112 1 No_clan
Cotton_A_14095_CDS 1 61 1 62 PF02392.16 Ycf4 Family 117 177 178 75.8 2.9e-21 1 No_clan
Cotton_A_18091_CDS 66 100 62 101 PF08263.12 LRRNT_2 Family 5 40 41 28.4 1.5e-06 1 No_clan
Cotton_A_18091_CDS 132 188 129 189 PF13855.6 LRR_8 Repeat 4 60 61 38.4 7.9e-10 1 CL0022
Cotton_A_18472_CDS 110 164 98 166 PF00912.22 Transgly Family 16 74 178 51.7 6.9e-14 1 CL0037
Cotton_A_13237_CDS 108 177 106 179 PF13499.6 EF-hand_7 Domain 3 70 71 38.1 1.6e-09 1 CL0220
Cotton_A_15766_CDS 57 332 57 351 PF00295.17 Glyco_hydro_28 Domain 1 273 325 231.9 9.6e-69 1 CL0268
Cotton_A_13929_CDS 32 134 27 136 PF00651.31 BTB Domain 10 108 111 26.9 4.5e-06 1 CL0033
Cotton_A_13929_CDS 206 475 206 475 PF03000.14 NPH3 Family 1 258 258 287.6 9.5e-86 1 No_clan
Cotton_A_19255_CDS 23 102 23 103 PF03810.19 IBN_N Family 1 73 74 45.7 4.7e-12 1 CL0020
Cotton_A_19255_CDS 381 437 381 437 PF13513.6 HEAT_EZ Repeat 1 55 55 38.6 1.1e-09 1 CL0020
Cotton_A_05324_CDS 12 33 5 33 PF00400.32 WD40 Repeat 17 38 38 12.6 0.2 1 CL0186
Cotton_A_05324_CDS 74 153 70 154 PF12894.7 ANAPC4_WD40 Repeat 9 89 92 23.1 6.7e-05 1 CL0186
Cotton_A_05324_CDS 459 560 458 562 PF04003.12 Utp12 Family 2 105 107 55.1 8.1e-15 1 No_clan
Cotton_A_30393_CDS 176 443 175 446 PF00069.25 Pkinase Domain 2 259 264 166.1 9.5e-49 1 CL0016
Cotton_A_13382_CDS 157 226 157 227 PF00076.22 RRM_1 Domain 1 69 70 54.1 9.9e-15 1 CL0221
Cotton_A_07967_CDS 115 189 114 189 PF04969.16 CS Domain 2 76 76 60.7 2.1e-16 1 CL0190
Cotton_A_07057_CDS 33 270 33 270 PF00230.20 MIP Family 1 227 227 291.6 4.3e-87 1 No_clan
Cotton_A_16976_CDS 125 144 125 144 PF15365.6 PNRC Motif 1 20 20 31.1 1.4e-07 1 No_clan
Cotton_A_16589_CDS 274 292 274 296 PF02493.20 MORN Repeat 1 19 23 18.2 0.0016 1 CL0251
Cotton_A_16589_CDS 297 319 297 319 PF02493.20 MORN Repeat 1 23 23 27.8 1.4e-06 1 CL0251
Cotton_A_16589_CDS 320 342 320 342 PF02493.20 MORN Repeat 1 23 23 26.0 5.3e-06 1 CL0251
Cotton_A_16589_CDS 343 364 343 365 PF02493.20 MORN Repeat 1 22 23 25.0 1.1e-05 1 CL0251
Cotton_A_16589_CDS 366 387 366 388 PF02493.20 MORN Repeat 1 22 23 24.6 1.5e-05 1 CL0251
Cotton_A_16589_CDS 389 411 389 411 PF02493.20 MORN Repeat 1 23 23 21.5 0.00014 1 CL0251
Cotton_A_16589_CDS 412 433 412 434 PF02493.20 MORN Repeat 1 22 23 26.3 4.2e-06 1 CL0251
Cotton_A_23462_CDS 7 55 3 91 PF13883.6 Pyrid_oxidase_2 Domain 37 85 170 37.8 1.7e-09 1 CL0336
Cotton_A_02600_CDS 27 311 27 313 PF12697.7 Abhydrolase_6 Domain 1 218 220 62.3 9.5e-17 1 CL0028
Cotton_A_18173_CDS 52 151 48 164 PF00134.23 Cyclin_N Domain 7 102 127 62.7 2.6e-17 1 CL0065
Cotton_A_18173_CDS 176 234 174 252 PF02984.19 Cyclin_C Domain 36 90 119 23.1 6e-05 1 CL0065
Cotton_A_19217_CDS 113 453 113 453 PF00443.29 UCH Family 1 257 257 172.9 8.3e-51 1 CL0125
Cotton_A_12498_CDS 12 216 7 218 PF02005.16 TRM Family 6 146 376 129.0 2.4e-37 1 CL0063
Cotton_A_12601_CDS 92 232 91 238 PF14543.6 TAXi_N Domain 2 150 178 100.1 1.6e-28 1 CL0129
Cotton_A_08041_CDS 13 65 12 66 PF00584.20 SecE Family 2 54 55 53.3 2e-14 1 No_clan
Cotton_A_09135_CDS 61 110 59 110 PF00847.20 AP2 Domain 3 54 54 44.7 1.2e-11 1 CL0081
Cotton_A_30803_CDS 41 115 39 116 PF00071.22 Ras Domain 82 156 162 84.6 5.6e-24 1 CL0023
Cotton_A_32086_CDS 15 69 15 70 PF04927.12 SMP Family 1 58 59 50.3 2.5e-13 1 No_clan
Cotton_A_32086_CDS 135 193 135 193 PF04927.12 SMP Family 1 59 59 81.0 6.5e-23 1 No_clan
Cotton_A_32086_CDS 200 258 200 259 PF04927.12 SMP Family 1 58 59 55.6 5.4e-15 1 No_clan
Cotton_A_00695_CDS 661 734 660 734 PF02201.18 SWIB Domain 6 74 74 45.1 7e-12 1 No_clan
Cotton_A_00695_CDS 801 904 801 905 PF03126.18 Plus-3 Domain 1 108 109 80.0 1.7e-22 1 No_clan
Cotton_A_14060_CDS 95 174 92 174 PF14389.6 Lzipper-MIP1 Family 4 84 84 71.0 7.7e-20 1 No_clan
Cotton_A_14060_CDS 366 499 365 499 PF04784.14 DUF547 Family 2 123 123 127.1 3.6e-37 1 No_clan
Cotton_A_08654_CDS 43 149 41 156 PF00060.26 Lig_chan Family 3 122 149 63.2 2.4e-17 1 CL0030
Cotton_A_30693_CDS 104 400 98 403 PF03552.14 Cellulose_synt Family 414 704 722 127.9 4.6e-37 1 CL0110
Cotton_A_38698_CDS 279 409 199 453 PF00201.18 UDPGT Family 274 382 499 56.0 3.1e-15 1 CL0113
Cotton_A_22947_CDS 22 315 21 317 PF02374.15 ArsA_ATPase Domain 2 303 305 342.6 1.9e-102 1 CL0023
Cotton_A_19592_CDS 30 266 27 266 PF00481.21 PP2C Family 4 258 258 206.2 6.7e-61 1 CL0238
Cotton_A_16938_CDS 14 296 14 296 PF02567.16 PhzC-PhzF Family 1 283 283 313.3 1.6e-93 1 CL0288
Cotton_A_11661_CDS 16 98 16 101 PF02214.22 BTB_2 Domain 1 91 94 50.8 1.6e-13 1 CL0033
Cotton_A_11629_CDS 30 224 30 224 PF00314.17 Thaumatin Domain 1 214 214 193.5 3.4e-57 1 CL0293
Cotton_A_13839_CDS 8 133 8 134 PF12165.8 Alfin Family 1 126 127 223.3 5.4e-67 1 No_clan
Cotton_A_13839_CDS 184 233 184 234 PF00628.29 PHD Domain 1 51 52 42.4 4.9e-11 1 CL0390
Cotton_A_01354_CDS 1 70 1 70 PF00141.23 peroxidase Domain 167 229 229 48.0 1.3e-12 1 CL0617
Cotton_A_23357_CDS 215 345 215 345 PF03469.14 XH Domain 1 131 131 178.7 4.4e-53 1 No_clan
Cotton_A_02877_CDS 8 174 1 178 PF00009.27 GTP_EFTU Domain 39 190 194 135.1 2e-39 1 CL0023
Cotton_A_02877_CDS 200 265 200 267 PF03144.25 GTP_EFTU_D2 Domain 1 72 74 52.8 3.8e-14 1 CL0575
Cotton_A_02877_CDS 274 381 273 382 PF03143.17 GTP_EFTU_D3 Domain 2 111 112 134.6 1.6e-39 1 No_clan
Cotton_A_19792_CDS 4 44 1 47 PF00643.24 zf-B_box Domain 5 39 42 24.1 3.1e-05 1 No_clan
Cotton_A_19792_CDS 53 94 52 98 PF00643.24 zf-B_box Domain 2 37 42 28.2 1.6e-06 1 No_clan
Cotton_A_03127_CDS 3 59 3 60 PF04758.14 Ribosomal_S30 Family 1 57 58 107.1 3.8e-31 1 No_clan
Cotton_A_19465_CDS 250 331 244 331 PF12796.7 Ank_2 Repeat 12 83 83 67.0 1.7e-18 1 CL0465
Cotton_A_16908_CDS 105 248 105 248 PF00258.25 Flavodoxin_1 Domain 1 143 143 109.5 1.5e-31 1 CL0042
Cotton_A_16908_CDS 306 384 303 398 PF00667.20 FAD_binding_1 Domain 4 84 222 76.6 2e-21 1 CL0076
Cotton_A_05033_CDS 10 173 10 175 PF03371.15 PRP38 Family 1 172 174 202.4 4.7e-60 1 No_clan
Cotton_A_05033_CDS 180 268 179 270 PF12871.7 PRP38_assoc Domain 2 97 100 31.0 2.9e-07 1 No_clan
Cotton_A_31215_CDS 416 551 416 551 PF00004.29 AAA Domain 1 132 132 134.6 2.8e-39 1 CL0023
Cotton_A_31215_CDS 579 615 578 618 PF17862.1 AAA_lid_3 Domain 6 42 45 40.8 1.4e-10 1 CL0671
Cotton_A_31215_CDS 906 977 903 984 PF00439.25 Bromodomain Domain 4 75 84 52.9 2.9e-14 1 No_clan
Cotton_A_27571_CDS 45 382 45 382 PF00933.21 Glyco_hydro_3 Domain 1 319 319 212.6 8.5e-63 1 CL0058
Cotton_A_27571_CDS 419 622 419 633 PF01915.22 Glyco_hydro_3_C Domain 1 197 204 120.0 1.3e-34 1 No_clan
Cotton_A_17755_CDS 28 64 26 64 PF08263.12 LRRNT_2 Family 3 41 41 29.5 7e-07 1 No_clan
Cotton_A_17755_CDS 84 129 83 129 PF13855.6 LRR_8 Repeat 16 61 61 31.5 1.1e-07 1 CL0022
Cotton_A_17755_CDS 163 179 162 180 PF13516.6 LRR_6 Repeat 2 18 24 12.5 0.12 1 CL0022
Cotton_A_17755_CDS 187 208 187 216 PF00560.33 LRR_1 Repeat 1 22 23 15.8 0.014 1 CL0022
Cotton_A_17755_CDS 329 591 326 593 PF07714.17 Pkinase_Tyr Domain 5 257 259 123.0 1.3e-35 1 CL0016
Cotton_A_29431_CDS 2 137 1 137 PF00685.27 Sulfotransfer_1 Domain 11 159 267 89.2 3e-25 1 CL0023
Cotton_A_39489_CDS 30 482 30 486 PF00067.22 p450 Domain 1 456 463 327.0 1.8e-97 1 No_clan
Cotton_A_10823_CDS 7 157 2 159 PF01150.17 GDA1_CD39 Family 88 247 423 134.4 4.3e-39 1 CL0108
Cotton_A_32473_CDS 14 140 10 148 PF10358.9 NT-C2 Family 5 138 146 53.0 2.9e-14 1 CL0154
Cotton_A_07711_CDS 7 111 6 113 PF00635.26 Motile_Sperm Domain 2 107 109 109.8 5.6e-32 1 CL0556
Cotton_A_28535_CDS 130 287 130 288 PF13328.6 HD_4 Family 1 155 156 143.7 3.6e-42 1 CL0237
Cotton_A_28535_CDS 356 472 353 474 PF04607.17 RelA_SpoT Family 4 110 117 72.8 2.7e-20 1 CL0260
Cotton_A_28535_CDS 543 602 543 602 PF02824.21 TGS Family 1 60 60 70.7 7.8e-20 1 CL0072
Cotton_A_27831_CDS 12 63 12 63 PF10780.9 MRP_L53 Family 1 53 53 50.5 1.7e-13 1 No_clan
Cotton_A_20456_CDS 11 80 11 80 PF08523.10 MBF1 Family 1 72 72 78.7 3.4e-22 1 No_clan
Cotton_A_20456_CDS 88 139 88 141 PF01381.22 HTH_3 Domain 1 52 55 46.5 2.8e-12 1 CL0123
Cotton_A_23253_CDS 7 68 7 69 PF07106.13 TBPIP Domain 1 61 62 86.9 6.5e-25 1 CL0123
Cotton_A_23253_CDS 149 206 149 206 PF18517.1 LZ3wCH Domain 1 55 55 62.4 3.1e-17 1 No_clan
Cotton_A_07813_CDS 165 346 164 348 PF00625.21 Guanylate_kin Domain 2 179 182 202.2 5.5e-60 1 CL0023
Cotton_A_11431_CDS 3 27 3 28 PF00642.24 zf-CCCH Family 2 26 27 44.0 1.3e-11 1 CL0537
Cotton_A_11431_CDS 40 65 40 66 PF00642.24 zf-CCCH Family 1 26 27 23.1 5e-05 1 CL0537
Cotton_A_05992_CDS 9 140 9 144 PF00072.24 Response_reg Domain 1 107 112 67.7 8.7e-19 1 CL0304
Cotton_A_31605_CDS 2 127 2 129 PF00270.29 DEAD Domain 1 123 176 91.3 6.1e-26 1 CL0023
Cotton_A_02295_CDS 74 177 74 177 PF03168.13 LEA_2 Domain 1 101 101 44.0 2.4e-11 1 CL0159
Cotton_A_25522_CDS 25 144 23 144 PF00903.25 Glyoxalase Domain 3 128 128 80.4 1.3e-22 1 CL0104
Cotton_A_25522_CDS 156 275 154 278 PF00903.25 Glyoxalase Domain 4 125 128 53.7 2.2e-14 1 CL0104
Cotton_A_33130_CDS 43 162 43 165 PF00188.26 CAP Domain 1 125 126 64.4 1.7e-17 1 CL0659
Cotton_A_28167_CDS 4 296 4 296 PF00069.25 Pkinase Domain 1 264 264 256.5 2.6e-76 1 CL0016
Cotton_A_11229_CDS 40 151 39 156 PF07732.15 Cu-oxidase_3 Domain 2 114 119 135.1 1.1e-39 1 CL0026
Cotton_A_11229_CDS 169 330 166 331 PF00394.22 Cu-oxidase Domain 5 158 159 147.6 3.1e-43 1 CL0026
Cotton_A_11229_CDS 436 558 417 560 PF07731.14 Cu-oxidase_2 Domain 23 135 137 125.9 8.9e-37 1 CL0026
Cotton_A_00094_CDS 15 61 14 61 PF00249.31 Myb_DNA-binding Domain 2 46 46 41.6 1.1e-10 1 CL0123
Cotton_A_00094_CDS 67 111 67 112 PF00249.31 Myb_DNA-binding Domain 1 45 46 58.8 4.4e-16 1 CL0123
Cotton_A_11932_CDS 170 390 151 442 PF00862.19 Sucrose_synth Family 276 480 548 30.4 1.2e-07 1 CL0113
Cotton_A_11932_CDS 471 646 462 647 PF00534.20 Glycos_transf_1 Family 11 171 172 87.3 8.4e-25 1 CL0113
Cotton_A_11932_CDS 798 990 771 1017 PF05116.13 S6PP Family 31 201 247 48.4 8.3e-13 1 CL0137
Cotton_A_33730_CDS 1805 2043 1804 2043 PF10441.9 Urb2 Family 2 205 205 133.5 9.2e-39 1 No_clan
Cotton_A_25783_CDS 16 61 15 69 PF05180.12 zf-DNL Domain 2 47 64 58.1 6e-16 1 No_clan
Cotton_A_34276_CDS 16 86 8 96 PF13714.6 PEP_mutase Domain 112 183 239 49.1 4.8e-13 1 CL0151
Cotton_A_04068_CDS 122 300 122 301 PF13419.6 HAD_2 Family 1 177 178 69.5 3.6e-19 1 CL0137
Cotton_A_26934_CDS 51 451 51 452 PF03514.14 GRAS Family 1 373 374 306.2 3e-91 1 CL0063
Cotton_A_26250_CDS 86 286 83 287 PF01596.17 Methyltransf_3 Domain 5 211 212 228.8 3.8e-68 1 CL0063
Cotton_A_04418_CDS 24 88 24 88 PF00076.22 RRM_1 Domain 1 70 70 45.0 6.8e-12 1 CL0221
Cotton_A_04418_CDS 101 165 101 165 PF00076.22 RRM_1 Domain 1 70 70 56.6 1.6e-15 1 CL0221
Cotton_A_04418_CDS 232 286 229 287 PF00076.22 RRM_1 Domain 10 69 70 34.9 1e-08 1 CL0221
Cotton_A_04418_CDS 502 619 499 630 PF07744.13 SPOC Domain 5 135 151 61.5 8.5e-17 1 CL0616
Cotton_A_07465_CDS 6 202 6 202 PF03665.13 UPF0172 Family 1 191 191 199.9 4e-59 1 CL0366
Cotton_A_09460_CDS 68 261 68 261 PF03798.16 TRAM_LAG1_CLN8 Domain 1 198 198 109.1 2.3e-31 1 No_clan
Cotton_A_20155_CDS 154 211 150 212 PF13432.6 TPR_16 Family 6 66 68 24.3 3.5e-05 1 CL0020
Cotton_A_20155_CDS 343 369 339 370 PF13181.6 TPR_8 Repeat 7 33 34 14.9 0.023 1 CL0020
Cotton_A_20155_CDS 419 450 417 450 PF00515.28 TPR_1 Repeat 3 34 34 30.3 2.4e-07 1 CL0020
Cotton_A_20155_CDS 514 594 508 604 PF00085.20 Thioredoxin Domain 9 91 103 38.2 1.1e-09 1 CL0172
Cotton_A_07766_CDS 3 64 1 67 PF03760.15 LEA_1 Family 7 68 71 59.5 3.8e-16 1 No_clan
Cotton_A_36809_CDS 5 107 4 108 PF01920.20 Prefoldin_2 Coiled-coil 3 105 106 77.5 6.5e-22 1 CL0200
Cotton_A_16277_CDS 112 141 104 143 PF02845.16 CUE Family 11 40 42 21.4 0.00015 1 CL0214
Cotton_A_10231_CDS 1 71 1 71 PF01397.21 Terpene_synth Domain 115 192 192 66.8 2e-18 1 No_clan
Cotton_A_10231_CDS 104 369 104 369 PF03936.16 Terpene_synth_C Domain 1 267 267 275.9 3.1e-82 1 CL0613
Cotton_A_00322_CDS 6 75 1 75 PF13837.6 Myb_DNA-bind_4 Domain 21 90 90 56.0 3.9e-15 1 CL0123
Cotton_A_15362_CDS 25 276 25 277 PF00756.20 Esterase Domain 1 250 251 202.1 1.2e-59 1 CL0028
Cotton_A_10943_CDS 3 99 2 99 PF09138.11 Urm1 Family 2 96 96 122.6 6.2e-36 1 CL0072
Cotton_A_04037_CDS 43 104 42 118 PF08240.12 ADH_N Domain 2 63 109 40.0 2.8e-10 1 CL0296
Cotton_A_04037_CDS 153 280 153 293 PF00107.26 ADH_zinc_N Family 1 117 130 69.9 1.9e-19 1 CL0063
Cotton_A_24979_CDS 446 475 445 475 PF07676.12 PD40 Repeat 8 38 38 22.4 8.3e-05 1 CL0186
Cotton_A_24979_CDS 488 514 487 528 PF07676.12 PD40 Repeat 2 28 38 25.6 8.5e-06 1 CL0186
Cotton_A_07592_CDS 12 105 2 119 PF08969.11 USP8_dimer Domain 17 113 115 23.8 3.8e-05 1 No_clan
Cotton_A_07592_CDS 319 425 317 426 PF01398.21 JAB Family 3 117 118 64.4 8.5e-18 1 CL0366
Cotton_A_15893_CDS 23 155 22 155 PF02365.15 NAM Family 2 126 126 118.6 3.2e-34 1 No_clan
Cotton_A_04346_CDS 20 66 18 66 PF03107.16 C1_2 Domain 3 47 47 27.8 2.4e-06 1 CL0006
Cotton_A_04346_CDS 75 121 75 121 PF03107.16 C1_2 Domain 1 47 47 39.4 5.7e-10 1 CL0006
Cotton_A_04346_CDS 187 233 186 233 PF03107.16 C1_2 Domain 2 47 47 31.3 1.8e-07 1 CL0006
Cotton_A_04346_CDS 315 362 315 362 PF03107.16 C1_2 Domain 1 47 47 27.6 2.7e-06 1 CL0006
Cotton_A_04346_CDS 437 482 436 482 PF03107.16 C1_2 Domain 2 47 47 32.7 6.9e-08 1 CL0006
Cotton_A_04346_CDS 495 536 493 536 PF03107.16 C1_2 Domain 3 47 47 36.6 4.1e-09 1 CL0006
Cotton_A_04346_CDS 637 681 636 681 PF03107.16 C1_2 Domain 2 47 47 33.8 3.1e-08 1 CL0006
Cotton_A_22178_CDS 159 417 158 418 PF01761.20 DHQ_synthase Domain 2 261 262 345.0 2.2e-103 1 CL0224
Cotton_A_37936_CDS 21 61 21 61 PF02533.15 PsbK Family 1 41 41 74.5 5.3e-21 1 No_clan
Cotton_A_11349_CDS 166 278 165 278 PF14288.6 FKS1_dom1 Family 2 129 129 118.4 2.4e-34 1 No_clan
Cotton_A_11349_CDS 882 1143 881 1146 PF02364.15 Glucan_synthase Family 2 262 819 210.1 5.6e-62 1 CL0111
Cotton_A_11349_CDS 1147 1429 1144 1440 PF02364.15 Glucan_synthase Family 538 809 819 212.5 1e-62 1 CL0111
Cotton_A_18668_CDS 69 120 68 121 PF14416.6 PMR5N Domain 2 52 53 74.3 7.1e-21 1 No_clan
Cotton_A_18668_CDS 122 416 122 417 PF13839.6 PC-Esterase Family 1 282 283 315.3 4.6e-94 1 CL0264
Cotton_A_13787_CDS 81 186 80 187 PF01453.24 B_lectin Domain 3 104 105 79.3 2.6e-22 1 No_clan
Cotton_A_13787_CDS 472 672 468 740 PF07714.17 Pkinase_Tyr Domain 5 208 259 152.5 1.2e-44 1 CL0016
Cotton_A_33203_CDS 66 121 48 128 PF13178.6 DUF4005 Family 17 68 93 28.2 2.3e-06 1 No_clan
Cotton_A_32240_CDS 6 310 6 310 PF00656.22 Peptidase_C14 Domain 1 248 248 175.3 2e-51 1 CL0093
Cotton_A_07329_CDS 72 201 72 202 PF00782.20 DSPc Domain 1 132 133 120.0 5.9e-35 1 CL0031
Cotton_A_11960_CDS 16 175 15 177 PF04055.21 Radical_SAM Domain 2 165 167 98.2 6.6e-28 1 CL0036
Cotton_A_11960_CDS 17 130 4 152 PF13353.6 Fer4_12 Domain 11 121 139 31.9 1.4e-07 1 CL0344
Cotton_A_11960_CDS 182 308 182 309 PF06463.13 Mob_synth_C Domain 1 127 128 126.3 6.8e-37 1 No_clan
Cotton_A_18961_CDS 103 146 102 146 PF13639.6 zf-RING_2 Domain 2 44 44 47.2 2.1e-12 1 CL0229
Cotton_A_34017_CDS 5 122 4 129 PF02170.22 PAZ Domain 2 127 137 68.2 5.9e-19 1 CL0638
Cotton_A_34017_CDS 140 186 140 187 PF16488.5 ArgoL2 Family 1 46 47 33.8 3.2e-08 1 No_clan
Cotton_A_34017_CDS 298 594 297 596 PF02171.17 Piwi Family 2 300 302 315.2 4.2e-94 1 CL0219
Cotton_A_02467_CDS 54 157 54 157 PF00011.21 HSP20 Family 1 102 102 91.5 3.1e-26 1 CL0190
Cotton_A_05800_CDS 112 303 111 303 PF03462.18 PCRF Domain 2 193 193 172.9 6.6e-51 1 No_clan
Cotton_A_05800_CDS 313 422 312 422 PF00472.20 RF-1 Family 2 116 116 120.9 2.6e-35 1 CL0337
Cotton_A_25326_CDS 126 361 122 363 PF00931.22 NB-ARC Domain 5 250 252 164.8 2.1e-48 1 CL0023
Cotton_A_25326_CDS 493 550 492 551 PF13855.6 LRR_8 Repeat 2 59 61 37.5 1.4e-09 1 CL0022
Cotton_A_19986_CDS 105 148 104 148 PF13639.6 zf-RING_2 Domain 2 44 44 54.2 1.3e-14 1 CL0229
Cotton_A_16814_CDS 64 154 43 161 PF00156.27 Pribosyltran Domain 31 130 159 30.9 1.7e-07 1 CL0533
Cotton_A_16814_CDS 241 460 241 460 PF00215.24 OMPdecase Domain 1 225 225 245.2 5.7e-73 1 CL0036
Cotton_A_16388_CDS 34 199 34 199 PF18018.1 DNA_pol_D_N Domain 1 130 130 126.6 6e-37 1 CL0021
Cotton_A_16388_CDS 220 429 220 431 PF04042.16 DNA_pol_E_B Family 1 209 211 160.6 3.2e-47 1 CL0163
Cotton_A_13463_CDS 53 198 53 198 PF03641.14 Lysine_decarbox Family 1 132 132 138.4 1.4e-40 1 CL0349
Cotton_A_33110_CDS 13 192 12 207 PF00106.25 adh_short Domain 2 178 195 102.6 1.8e-29 1 CL0063
Cotton_A_14920_CDS 158 270 157 270 PF14288.6 FKS1_dom1 Family 2 129 129 129.3 1.1e-37 1 No_clan
Cotton_A_14920_CDS 871 1667 870 1677 PF02364.15 Glucan_synthase Family 2 810 819 888.5 4.5e-267 1 CL0111
Cotton_A_08921_CDS 1 104 1 106 PF00190.22 Cupin_1 Domain 45 149 151 85.6 2.5e-24 1 CL0029
Cotton_A_40473_CDS 99 400 98 405 PF13249.6 SQHop_cyclase_N Domain 2 286 291 134.9 2.9e-39 1 CL0059
Cotton_A_40473_CDS 414 759 413 760 PF13243.6 SQHop_cyclase_C Domain 2 318 319 152.3 1.6e-44 1 CL0059
Cotton_A_11882_CDS 10 79 9 84 PF00173.28 Cyt-b5 Domain 2 73 74 72.8 1.9e-20 1 No_clan
Cotton_A_11882_CDS 136 406 135 408 PF00487.24 FA_desaturase Domain 2 252 254 113.7 1.3e-32 1 No_clan
Cotton_A_03694_CDS 169 539 169 539 PF03514.14 GRAS Family 1 374 374 458.3 1.8e-137 1 CL0063
Cotton_A_02191_CDS 7 133 7 133 PF02365.15 NAM Family 1 126 126 135.2 2.2e-39 1 No_clan
Cotton_A_05200_CDS 60 262 58 272 PF04757.14 Pex2_Pex12 Family 3 214 225 127.2 6.7e-37 1 No_clan
Cotton_A_38746_CDS 159 222 158 222 PF02319.20 E2F_TDP Domain 2 71 71 84.5 3.8e-24 1 CL0123
Cotton_A_38746_CDS 239 337 238 338 PF16421.5 E2F_CC-MB Domain 2 94 95 118.7 1e-34 1 No_clan
Cotton_A_19767_CDS 56 311 56 314 PF00149.28 Metallophos Domain 2 201 204 39.1 1.1e-09 1 CL0163
Cotton_A_15972_CDS 6 190 6 231 PF16363.5 GDP_Man_Dehyd Domain 1 189 332 153.5 9e-45 1 CL0063
Cotton_A_15972_CDS 188 364 163 364 PF00069.25 Pkinase Domain 91 264 264 147.9 3.5e-43 1 CL0016
Cotton_A_15972_CDS 427 528 427 530 PF14593.6 PH_3 Family 1 99 104 100.0 7e-29 1 CL0266
Cotton_A_01383_CDS 60 327 59 328 PF00067.22 p450 Domain 1 272 463 101.5 4.4e-29 1 No_clan
Cotton_A_08230_CDS 34 129 33 129 PF01657.17 Stress-antifung Family 2 95 95 48.3 1.2e-12 1 No_clan
Cotton_A_01583_CDS 36 340 35 341 PF01301.19 Glyco_hydro_35 Domain 2 315 316 403.8 6.4e-121 1 CL0058
Cotton_A_01583_CDS 348 419 348 419 PF17834.1 GHD Domain 1 72 72 97.7 2.9e-28 1 CL0369
Cotton_A_22660_CDS 19 286 18 287 PF00248.21 Aldo_ket_red Domain 2 293 294 168.3 2.1e-49 1 No_clan
Cotton_A_16165_CDS 77 249 77 255 PF02485.21 Branch Family 1 156 247 138.6 2.4e-40 1 CL0110
Cotton_A_36638_CDS 27 70 26 71 PF00401.20 ATP-synt_DE Domain 2 46 47 34.6 1.7e-08 1 No_clan
Cotton_A_20570_CDS 16 177 16 219 PF00657.22 Lipase_GDSL Family 1 135 200 27.3 3.1e-06 1 CL0264
Cotton_A_32071_CDS 124 470 123 470 PF00069.25 Pkinase Domain 2 264 264 163.0 8.7e-48 1 CL0016
Cotton_A_06253_CDS 14 67 12 68 PF00046.29 Homeodomain Domain 3 56 57 54.8 6e-15 1 CL0123
Cotton_A_03565_CDS 61 164 61 180 PF14226.6 DIOX_N Family 1 102 118 79.7 2.8e-22 1 CL0029
Cotton_A_03565_CDS 225 323 224 323 PF03171.20 2OG-FeII_Oxy Domain 2 101 101 96.5 1.1e-27 1 CL0029
Cotton_A_17094_CDS 35 115 35 115 PF02298.17 Cu_bind_like Domain 1 84 84 73.4 1.1e-20 1 CL0026
Cotton_A_21784_CDS 315 399 315 400 PF04795.12 PAPA-1 Family 1 85 86 72.3 4.4e-20 1 No_clan
Cotton_A_21784_CDS 416 447 416 447 PF04438.16 zf-HIT Domain 1 30 30 28.7 8.7e-07 1 CL0175
Cotton_A_16520_CDS 195 293 191 298 PF00069.25 Pkinase Domain 47 142 264 35.7 5.8e-09 1 CL0016
Cotton_A_16520_CDS 346 558 345 604 PF02138.18 Beach Family 2 238 276 149.1 1.5e-43 1 No_clan
Cotton_A_13037_CDS 17 106 16 108 PF00153.27 Mito_carr Family 2 95 97 61.8 4.3e-17 1 No_clan
Cotton_A_13037_CDS 112 207 110 208 PF00153.27 Mito_carr Family 3 96 97 67.6 6.6e-19 1 No_clan
Cotton_A_13037_CDS 215 306 213 309 PF00153.27 Mito_carr Family 3 94 97 87.0 5.9e-25 1 No_clan
Cotton_A_07001_CDS 88 307 57 316 PF08423.11 Rad51 Domain 18 238 255 66.3 2.4e-18 1 CL0023
Cotton_A_20825_CDS 29 62 29 117 PF00786.28 PBD Domain 1 36 59 38.3 1.3e-09 1 No_clan
Cotton_A_04708_CDS 37 137 37 152 PF14226.6 DIOX_N Family 1 98 118 57.3 2.4e-15 1 CL0029
Cotton_A_04708_CDS 185 279 180 279 PF03171.20 2OG-FeII_Oxy Domain 6 101 101 92.5 1.9e-26 1 CL0029
Cotton_A_19279_CDS 38 142 38 147 PF14226.6 DIOX_N Family 1 116 118 91.6 5.5e-26 1 CL0029
Cotton_A_19279_CDS 190 288 188 288 PF03171.20 2OG-FeII_Oxy Domain 3 101 101 105.7 1.5e-30 1 CL0029
Cotton_A_19223_CDS 154 322 154 322 PF06925.11 MGDG_synth Family 1 169 169 205.2 7.3e-61 1 CL0113
Cotton_A_19223_CDS 381 447 348 472 PF04101.16 Glyco_tran_28_C Domain 31 97 167 35.2 1.1e-08 1 CL0113
Cotton_A_38881_CDS 176 246 139 247 PF14380.6 WAK_assoc Domain 32 103 104 38.7 1.3e-09 1 No_clan
Cotton_A_38881_CDS 319 522 317 533 PF00069.25 Pkinase Domain 4 197 264 141.5 3e-41 1 CL0016
Cotton_A_26423_CDS 23 113 22 113 PF00428.19 Ribosomal_60s Family 2 88 88 98.1 3.4e-28 1 No_clan
Cotton_A_05205_CDS 331 414 320 419 PF00201.18 UDPGT Family 328 406 499 39.0 4.2e-10 1 CL0113
Cotton_A_25740_CDS 63 335 46 335 PF00311.17 PEPcase Family 161 429 795 213.0 6.7e-63 1 CL0151
Cotton_A_30098_CDS 366 466 362 471 PF16501.5 SCAPER_N Family 5 93 98 61.4 6.1e-17 1 No_clan
Cotton_A_25542_CDS 114 170 114 171 PF04844.13 Ovate Family 1 57 58 74.2 5.9e-21 1 No_clan
Cotton_A_33310_CDS 5 68 1 68 PF16983.5 MFS_MOT1 Family 50 111 111 41.1 1.9e-10 1 CL0062
Cotton_A_25256_CDS 117 226 116 227 PF11255.8 DUF3054 Family 2 109 110 89.3 2.2e-25 1 No_clan
Cotton_A_36433_CDS 10 77 10 81 PF04564.15 U-box Domain 1 68 73 66.7 1.5e-18 1 CL0229
Cotton_A_01033_CDS 55 122 55 125 PF00076.22 RRM_1 Domain 1 67 70 51.3 7.5e-14 1 CL0221
Cotton_A_32924_CDS 249 319 249 321 PF04564.15 U-box Domain 1 71 73 76.1 1.8e-21 1 CL0229
Cotton_A_32924_CDS 376 415 376 416 PF00514.23 Arm Repeat 1 40 41 41.7 7.4e-11 1 CL0020
Cotton_A_32924_CDS 459 497 459 498 PF00514.23 Arm Repeat 2 40 41 31.2 1.5e-07 1 CL0020
Cotton_A_27098_CDS 2 166 1 166 PF05856.12 ARPC4 Family 3 167 167 258.0 2.8e-77 1 No_clan
Cotton_A_39567_CDS 49 108 47 109 PF04083.16 Abhydro_lipase Family 3 62 64 60.2 1e-16 1 CL0028
Cotton_A_25185_CDS 123 250 113 251 PF09405.10 Btz Domain 14 129 130 76.4 2.3e-21 1 No_clan
Cotton_A_16389_CDS 42 68 42 69 PF05678.14 VQ Motif 1 27 28 47.3 1e-12 1 No_clan
Cotton_A_20753_CDS 138 262 134 264 PF01529.20 DHHC Family 6 132 134 132.5 1e-38 1 No_clan
Cotton_A_02703_CDS 94 262 94 264 PF03634.13 TCP Family 1 154 156 144.8 3e-42 1 No_clan
Cotton_A_35326_CDS 7 175 7 178 PF05368.13 NmrA Family 1 166 233 201.9 1.1e-59 1 CL0063
Cotton_A_32091_CDS 48 82 42 82 PF00400.32 WD40 Repeat 9 37 38 16.3 0.013 1 CL0186
Cotton_A_32091_CDS 131 170 131 170 PF00400.32 WD40 Repeat 1 38 38 16.0 0.017 1 CL0186
Cotton_A_32091_CDS 230 261 223 261 PF00400.32 WD40 Repeat 8 38 38 21.1 0.00041 1 CL0186
Cotton_A_32091_CDS 269 303 265 303 PF00400.32 WD40 Repeat 5 38 38 21.4 0.00034 1 CL0186
Cotton_A_32091_CDS 584 728 569 732 PF11816.8 DUF3337 Family 38 168 172 88.5 4.4e-25 1 No_clan
Cotton_A_34596_CDS 11 218 3 219 PF13839.6 PC-Esterase Family 84 282 283 184.4 3.6e-54 1 CL0264
Cotton_A_09327_CDS 163 271 161 274 PF05132.14 RNA_pol_Rpc4 Family 3 146 149 67.5 1.6e-18 1 CL0662
Cotton_A_31454_CDS 34 144 34 144 PF05938.11 Self-incomp_S1 Family 1 104 104 93.1 1.4e-26 1 No_clan
Cotton_A_00850_CDS 53 128 52 130 PF03330.18 DPBB_1 Domain 2 81 83 45.1 9.1e-12 1 CL0199
Cotton_A_31648_CDS 103 430 97 431 PF03140.15 DUF247 Family 72 396 397 239.5 7.1e-71 1 No_clan
Cotton_A_00451_CDS 12 41 11 41 PF01535.20 PPR Family 2 31 31 13.5 0.064 1 CL0020
Cotton_A_00451_CDS 78 126 77 126 PF13041.6 PPR_2 Repeat 2 50 50 46.2 3.7e-12 1 CL0020
Cotton_A_00451_CDS 147 196 147 196 PF13041.6 PPR_2 Repeat 1 50 50 57.0 1.6e-15 1 CL0020
Cotton_A_00451_CDS 239 288 239 288 PF13041.6 PPR_2 Repeat 1 50 50 59.3 3.2e-16 1 CL0020
Cotton_A_00451_CDS 340 369 340 370 PF12854.7 PPR_1 Repeat 1 30 34 24.3 1.9e-05 1 CL0020
Cotton_A_00451_CDS 379 425 379 426 PF13041.6 PPR_2 Repeat 1 47 50 44.1 1.7e-11 1 CL0020
Cotton_A_00451_CDS 438 482 437 492 PF13812.6 PPR_3 Repeat 2 46 63 20.3 0.00044 1 CL0020
Cotton_A_00451_CDS 493 517 489 517 PF01535.20 PPR Family 7 31 31 12.7 0.11 1 CL0020
Cotton_A_00451_CDS 520 567 519 568 PF13041.6 PPR_2 Repeat 2 49 50 39.1 6.2e-10 1 CL0020
Cotton_A_00451_CDS 588 637 588 637 PF13041.6 PPR_2 Repeat 1 50 50 72.3 2.7e-20 1 CL0020
Cotton_A_00451_CDS 694 742 693 742 PF13041.6 PPR_2 Repeat 2 50 50 47.1 2e-12 1 CL0020
Cotton_A_00451_CDS 763 810 763 812 PF13041.6 PPR_2 Repeat 1 48 50 54.3 1.1e-14 1 CL0020
Cotton_A_00451_CDS 833 881 833 882 PF13041.6 PPR_2 Repeat 1 49 50 48.7 6.3e-13 1 CL0020
Cotton_A_34059_CDS 1 144 1 151 PF00016.20 RuBisCO_large Domain 97 241 299 169.1 1.3e-49 1 No_clan
Cotton_A_04642_CDS 18 122 18 122 PF09298.11 FAA_hydrolase_N Domain 1 107 107 109.3 9.9e-32 1 No_clan
Cotton_A_04642_CDS 128 415 127 416 PF01557.18 FAA_hydrolase Family 3 217 218 199.2 6.4e-59 1 CL0377
Cotton_A_12148_CDS 103 210 103 210 PF04526.13 DUF568 Family 1 101 101 73.9 1.4e-20 1 No_clan
Cotton_A_12148_CDS 228 354 228 358 PF03188.16 Cytochrom_B561 Family 1 130 137 27.2 3.4e-06 1 CL0328
Cotton_A_25654_CDS 64 106 64 109 PF00046.29 Homeodomain Domain 1 43 57 34.3 1.5e-08 1 CL0123
Cotton_A_25654_CDS 252 473 251 473 PF01852.19 START Domain 2 209 209 187.8 1.6e-55 1 CL0209
Cotton_A_24906_CDS 36 221 36 222 PF00406.22 ADK Domain 1 150 151 199.8 2.4e-59 1 CL0023
Cotton_A_24906_CDS 158 193 158 193 PF05191.14 ADK_lid Domain 1 36 36 63.3 1.4e-17 1 No_clan
Cotton_A_32432_CDS 45 104 43 108 PF13499.6 EF-hand_7 Domain 3 68 71 42.3 7.5e-11 1 CL0220
Cotton_A_32432_CDS 116 177 114 178 PF13499.6 EF-hand_7 Domain 3 70 71 51.7 8.8e-14 1 CL0220
Cotton_A_14794_CDS 134 307 134 307 PF00270.29 DEAD Domain 1 176 176 165.8 7.9e-49 1 CL0023
Cotton_A_14794_CDS 344 452 343 452 PF00271.31 Helicase_C Family 2 111 111 106.0 1.3e-30 1 CL0023
Cotton_A_14741_CDS 54 213 53 213 PF01554.18 MatE Family 2 161 161 99.8 1.2e-28 1 CL0222
Cotton_A_14741_CDS 275 435 274 437 PF01554.18 MatE Family 2 159 161 86.7 1.2e-24 1 CL0222
Cotton_A_10411_CDS 42 160 42 161 PF00917.26 MATH Domain 1 111 113 44.1 1.9e-11 1 CL0389
Cotton_A_14441_CDS 288 655 288 655 PF03514.14 GRAS Family 1 374 374 428.7 1.7e-128 1 CL0063
Cotton_A_04907_CDS 2 104 1 104 PF00168.30 C2 Domain 2 103 103 98.7 2e-28 1 CL0154
Cotton_A_04907_CDS 255 403 254 403 PF16016.5 VASt Domain 2 154 154 108.2 4.8e-31 1 CL0209
Cotton_A_04907_CDS 538 639 537 639 PF00168.30 C2 Domain 2 103 103 56.9 2.1e-15 1 CL0154
Cotton_A_04907_CDS 691 782 690 829 PF02893.20 GRAM Domain 2 84 114 47.9 1e-12 1 CL0266
Cotton_A_04907_CDS 866 1006 865 1007 PF16016.5 VASt Domain 2 153 154 71.5 9.8e-20 1 CL0209
Cotton_A_19457_CDS 40 140 39 140 PF02943.15 FeThRed_B Domain 2 106 106 143.0 2.8e-42 1 No_clan
Cotton_A_05445_CDS 505 775 502 775 PF07714.17 Pkinase_Tyr Domain 4 259 259 165.6 1.3e-48 1 CL0016
Cotton_A_28792_CDS 45 426 45 439 PF02684.15 LpxB Family 1 359 374 229.0 7.9e-68 1 CL0113
Cotton_A_03501_CDS 27 135 26 139 PF04398.12 DUF538 Family 2 108 112 84.5 6.4e-24 1 No_clan
Cotton_A_26582_CDS 158 216 157 218 PF13812.6 PPR_3 Repeat 2 60 63 51.4 8.7e-14 1 CL0020
Cotton_A_26582_CDS 229 289 228 290 PF13812.6 PPR_3 Repeat 2 62 63 51.1 1.1e-13 1 CL0020
Cotton_A_26582_CDS 310 355 310 359 PF13041.6 PPR_2 Repeat 1 46 50 49.5 3.5e-13 1 CL0020
Cotton_A_26582_CDS 384 427 383 429 PF13041.6 PPR_2 Repeat 5 48 50 37.5 2.1e-09 1 CL0020
Cotton_A_26582_CDS 478 532 473 535 PF13812.6 PPR_3 Repeat 6 60 63 33.2 4e-08 1 CL0020
Cotton_A_26582_CDS 562 588 559 588 PF01535.20 PPR Family 5 31 31 9.8 0.96 1 CL0020
Cotton_A_15315_CDS 115 240 115 241 PF13837.6 Myb_DNA-bind_4 Domain 1 89 90 81.2 5.3e-23 1 CL0123
Cotton_A_11701_CDS 51 112 51 115 PF00538.19 Linker_histone Domain 1 63 74 26.8 4.8e-06 1 CL0123
Cotton_A_22022_CDS 197 245 137 260 PF03171.20 2OG-FeII_Oxy Domain 42 88 101 23.3 6.9e-05 1 CL0029
Cotton_A_04328_CDS 3 144 1 146 PF00069.25 Pkinase Domain 14 147 264 37.1 2.1e-09 1 CL0016
Cotton_A_06443_CDS 11 84 11 84 PF07765.12 KIP1 Family 1 74 74 116.9 3.1e-34 1 No_clan
Cotton_A_24407_CDS 79 150 79 150 PF04640.14 PLATZ Family 1 82 82 87.0 1e-24 1 No_clan
Cotton_A_06570_CDS 222 278 222 278 PF03106.15 WRKY Domain 1 59 59 82.6 1.8e-23 1 CL0274
Cotton_A_06570_CDS 386 443 386 443 PF03106.15 WRKY Domain 1 59 59 90.1 7.8e-26 1 CL0274
Cotton_A_25987_CDS 51 110 50 111 PF00403.26 HMA Domain 2 61 62 54.5 1.2e-14 1 No_clan
Cotton_A_25987_CDS 129 188 128 189 PF00403.26 HMA Domain 2 61 62 47.3 2.1e-12 1 No_clan
Cotton_A_25987_CDS 453 631 434 633 PF00122.20 E1-E2_ATPase Family 14 178 181 160.2 3.5e-47 1 No_clan
Cotton_A_25987_CDS 650 873 650 873 PF00702.26 Hydrolase Domain 1 210 210 157.5 5.6e-46 1 CL0137
Cotton_A_19268_CDS 26 97 26 97 PF00240.23 ubiquitin Domain 1 72 72 116.7 2.8e-34 1 CL0072
Cotton_A_19268_CDS 101 150 101 150 PF01020.17 Ribosomal_L40e Family 1 50 50 107.8 1.7e-31 1 CL0167
Cotton_A_39374_CDS 47 287 46 288 PF00141.23 peroxidase Domain 2 228 229 211.3 1.5e-62 1 CL0617
Cotton_A_04291_CDS 54 182 54 184 PF01467.26 CTP_transf_like Domain 1 141 143 89.4 2.4e-25 1 CL0039
Cotton_A_04291_CDS 236 366 236 388 PF01467.26 CTP_transf_like Domain 1 142 143 54.7 1.2e-14 1 CL0039
Cotton_A_24013_CDS 261 344 261 344 PF14547.6 Hydrophob_seed Domain 1 85 85 98.1 2.6e-28 1 CL0482
Cotton_A_20319_CDS 25 116 23 118 PF14363.6 AAA_assoc Family 3 94 96 38.1 1.5e-09 1 No_clan
Cotton_A_20319_CDS 228 345 227 345 PF00004.29 AAA Domain 2 132 132 49.2 6.9e-13 1 CL0023
Cotton_A_27325_CDS 205 414 4 414 PF10253.9 PRCC Family 49 214 214 49.1 1.2e-12 1 No_clan
Cotton_A_35450_CDS 271 408 246 452 PF00201.18 UDPGT Family 277 386 499 72.0 4.2e-20 1 CL0113
Cotton_A_18913_CDS 42 109 42 109 PF16209.5 PhoLip_ATPase_N Family 1 67 67 81.2 3.3e-23 1 No_clan
Cotton_A_18913_CDS 536 641 535 643 PF13246.6 Cation_ATPase Family 2 89 91 49.1 4.4e-13 1 CL0137
Cotton_A_18913_CDS 894 1144 894 1145 PF16212.5 PhoLip_ATPase_C Family 1 248 249 281.5 6.9e-84 1 No_clan
Cotton_A_18196_CDS 46 99 23 149 PF00163.19 Ribosomal_S4 Family 30 81 83 29.6 9.7e-07 1 CL0492
Cotton_A_18196_CDS 144 187 144 190 PF01479.25 S4 Domain 1 44 48 47.4 1.1e-12 1 CL0492
Cotton_A_04805_CDS 149 212 149 212 PF07727.14 RVT_2 Family 1 63 242 49.7 3.8e-13 1 CL0027
Cotton_A_06088_CDS 25 177 25 178 PF00406.22 ADK Domain 1 150 151 165.7 7.4e-49 1 CL0023
Cotton_A_16602_CDS 7 111 6 113 PF00635.26 Motile_Sperm Domain 2 107 109 113.2 5e-33 1 CL0556
Cotton_A_01207_CDS 3 283 1 285 PF03016.15 Exostosin Family 3 298 300 196.6 5.2e-58 1 No_clan
Cotton_A_27289_CDS 16 95 8 96 PF14368.6 LTP_2 Family 4 96 97 25.0 1.5e-05 1 CL0482
Cotton_A_23996_CDS 66 559 63 559 PF04109.16 APG9 Family 4 479 479 559.7 6.3e-168 1 No_clan
Cotton_A_26067_CDS 1 147 1 147 PF14009.6 DUF4228 Family 1 179 179 101.6 6.6e-29 1 No_clan
Cotton_A_24757_CDS 44 299 44 304 PF00657.22 Lipase_GDSL Family 1 178 200 56.4 3.9e-15 1 CL0264
Cotton_A_24237_CDS 90 147 89 148 PF13855.6 LRR_8 Repeat 2 60 61 35.4 6.4e-09 1 CL0022
Cotton_A_24237_CDS 260 273 257 275 PF13516.6 LRR_6 Repeat 4 17 24 9.9 0.8 1 CL0022
Cotton_A_17620_CDS 229 463 229 465 PF01734.22 Patatin Family 1 202 204 73.3 2.9e-20 1 CL0323
Cotton_A_12384_CDS 32 342 32 343 PF00657.22 Lipase_GDSL Family 1 198 200 78.3 7.3e-22 1 CL0264
Cotton_A_12055_CDS 76 244 75 244 PF14543.6 TAXi_N Domain 2 178 178 139.8 1.1e-40 1 CL0129
Cotton_A_12055_CDS 272 437 272 439 PF14541.6 TAXi_C Domain 1 159 161 123.8 5.5e-36 1 CL0129
Cotton_A_26141_CDS 34 111 32 112 PF13774.6 Longin Domain 3 83 84 86.9 7.1e-25 1 No_clan
Cotton_A_26141_CDS 129 215 127 215 PF00957.21 Synaptobrevin Family 3 89 89 113.9 2.2e-33 1 CL0445
Cotton_A_04597_CDS 52 149 49 150 PF12248.8 Methyltransf_FA Family 4 101 102 81.0 6.5e-23 1 CL0004
Cotton_A_04597_CDS 195 293 194 296 PF00651.31 BTB Domain 2 108 111 45.8 6e-12 1 CL0033
Cotton_A_04597_CDS 334 446 334 448 PF00651.31 BTB Domain 1 109 111 71.0 8.7e-20 1 CL0033
Cotton_A_04597_CDS 459 528 454 577 PF07707.15 BACK Domain 6 74 103 26.1 6.8e-06 1 CL0033
Cotton_A_04597_CDS 659 791 658 794 PF00754.25 F5_F8_type_C Domain 2 124 127 38.6 9.8e-10 1 CL0202
Cotton_A_06080_CDS 120 177 118 180 PF13812.6 PPR_3 Repeat 3 60 63 24.2 2.5e-05 1 CL0020
Cotton_A_06080_CDS 197 229 196 229 PF12854.7 PPR_1 Repeat 2 34 34 44.1 1.2e-11 1 CL0020
Cotton_A_06080_CDS 235 283 235 284 PF13041.6 PPR_2 Repeat 1 49 50 49.1 4.8e-13 1 CL0020
Cotton_A_06080_CDS 310 338 309 338 PF01535.20 PPR Family 3 31 31 18.5 0.0017 1 CL0020
Cotton_A_06080_CDS 340 389 340 389 PF13041.6 PPR_2 Repeat 1 50 50 57.3 1.3e-15 1 CL0020
Cotton_A_06080_CDS 410 459 410 459 PF13041.6 PPR_2 Repeat 1 50 50 60.7 1.1e-16 1 CL0020
Cotton_A_06080_CDS 528 575 528 577 PF13041.6 PPR_2 Repeat 1 48 50 69.2 2.5e-19 1 CL0020
Cotton_A_06080_CDS 672 699 670 700 PF01535.20 PPR Family 3 30 31 19.4 0.00086 1 CL0020
Cotton_A_37873_CDS 46 290 44 291 PF00141.23 peroxidase Domain 3 228 229 229.7 3.6e-68 1 CL0617
Cotton_A_11640_CDS 3 211 3 212 PF00091.25 Tubulin Domain 1 196 197 237.3 1.6e-70 1 CL0566
Cotton_A_11640_CDS 261 382 261 383 PF03953.17 Tubulin_C Domain 1 125 126 136.9 3.9e-40 1 CL0442
Cotton_A_33259_CDS 188 439 185 442 PF13621.6 Cupin_8 Domain 4 251 254 173.3 7.5e-51 1 CL0029
Cotton_A_08084_CDS 31 170 25 170 PF10604.9 Polyketide_cyc2 Family 7 143 143 63.1 3.3e-17 1 CL0209
Cotton_A_12282_CDS 340 608 339 609 PF07714.17 Pkinase_Tyr Domain 2 258 259 154.3 3.4e-45 1 CL0016
Cotton_A_28873_CDS 272 429 261 444 PF00160.21 Pro_isomerase Domain 12 142 158 88.0 7.6e-25 1 CL0475
Cotton_A_09345_CDS 106 255 106 267 PF00069.25 Pkinase Domain 1 149 264 148.2 2.8e-43 1 CL0016
Cotton_A_09345_CDS 310 413 297 413 PF00069.25 Pkinase Domain 154 264 264 71.6 6.4e-20 1 CL0016
Cotton_A_10692_CDS 11 161 10 161 PF00582.26 Usp Domain 3 141 141 120.3 8.7e-35 1 CL0039
Cotton_A_26699_CDS 890 1005 889 1034 PF00271.31 Helicase_C Family 2 106 111 27.6 2.9e-06 1 CL0023
Cotton_A_12535_CDS 26 64 24 65 PF08263.12 LRRNT_2 Family 3 40 41 33.6 3.6e-08 1 No_clan
Cotton_A_12535_CDS 97 153 95 153 PF13855.6 LRR_8 Repeat 5 61 61 29.6 4.3e-07 1 CL0022
Cotton_A_12535_CDS 333 393 333 393 PF13855.6 LRR_8 Repeat 1 61 61 28.6 9e-07 1 CL0022
Cotton_A_12535_CDS 411 433 411 433 PF00560.33 LRR_1 Repeat 1 23 23 9.4 1.9 1 CL0022
Cotton_A_12535_CDS 605 663 603 663 PF13855.6 LRR_8 Repeat 3 61 61 44.4 1e-11 1 CL0022
Cotton_A_12535_CDS 774 1041 770 1041 PF07714.17 Pkinase_Tyr Domain 6 259 259 161.3 2.5e-47 1 CL0016
Cotton_A_15040_CDS 5 97 2 99 PF01412.18 ArfGap Domain 25 115 117 90.2 9.4e-26 1 No_clan
Cotton_A_15040_CDS 140 230 140 241 PF00168.30 C2 Domain 1 94 103 83.4 1.2e-23 1 CL0154
Cotton_A_25990_CDS 1 26 1 26 PF01535.20 PPR Family 6 31 31 17.9 0.0026 1 CL0020
Cotton_A_25990_CDS 96 142 95 144 PF13041.6 PPR_2 Repeat 2 48 50 46.1 4e-12 1 CL0020
Cotton_A_25990_CDS 196 243 196 245 PF13041.6 PPR_2 Repeat 1 48 50 30.3 3.5e-07 1 CL0020
Cotton_A_25990_CDS 300 325 300 330 PF01535.20 PPR Family 1 26 31 19.8 0.00065 1 CL0020
Cotton_A_25990_CDS 397 435 397 444 PF13041.6 PPR_2 Repeat 1 39 50 31.4 1.5e-07 1 CL0020
Cotton_A_25990_CDS 472 498 469 499 PF01535.20 PPR Family 4 30 31 14.4 0.034 1 CL0020
Cotton_A_25990_CDS 500 528 500 528 PF01535.20 PPR Family 1 29 31 28.0 1.5e-06 1 CL0020
Cotton_A_25990_CDS 572 596 570 598 PF01535.20 PPR Family 3 27 31 11.4 0.31 1 CL0020
Cotton_A_25990_CDS 642 666 637 666 PF01535.20 PPR Family 7 31 31 11.3 0.34 1 CL0020
Cotton_A_15230_CDS 15 226 13 288 PF07714.17 Pkinase_Tyr Domain 3 206 259 124.7 3.8e-36 1 CL0016
Cotton_A_28180_CDS 212 255 212 255 PF10533.9 Plant_zn_clust Domain 1 49 49 66.1 1.9e-18 1 No_clan
Cotton_A_28180_CDS 259 315 258 316 PF03106.15 WRKY Domain 2 58 59 91.9 2.2e-26 1 CL0274
Cotton_A_14995_CDS 219 401 218 401 PF07466.11 DUF1517 Family 2 184 184 236.0 3.3e-70 1 No_clan
Cotton_A_22006_CDS 471 569 469 570 PF06047.11 Nkap_C Domain 3 101 102 162.6 2.1e-48 1 No_clan
Cotton_A_39955_CDS 15 53 15 53 PF13923.6 zf-C3HC4_2 Domain 1 40 40 39.9 2.8e-10 1 CL0229
Cotton_A_39955_CDS 647 725 647 726 PF13771.6 zf-HC5HC2H Domain 1 89 90 40.3 2.8e-10 1 CL0390
Cotton_A_39955_CDS 875 984 874 986 PF16589.5 BRCT_2 Family 2 78 85 28.2 1.9e-06 1 CL0459
Cotton_A_25396_CDS 301 330 298 330 PF08711.11 Med26 Domain 24 53 53 29.9 4.1e-07 1 No_clan
Cotton_A_39578_CDS 79 215 79 217 PF01565.23 FAD_binding_4 Domain 1 136 139 91.1 4.9e-26 1 CL0077
Cotton_A_39578_CDS 475 533 475 533 PF08031.12 BBE Domain 1 46 46 70.4 1e-19 1 CL0277
Cotton_A_25341_CDS 37 364 37 367 PF00657.22 Lipase_GDSL Family 1 197 200 45.1 1.1e-11 1 CL0264
Cotton_A_27032_CDS 156 203 155 205 PF08699.10 ArgoL1 Domain 2 50 52 58.8 3e-16 1 No_clan
Cotton_A_27032_CDS 211 337 210 338 PF02170.22 PAZ Domain 2 136 137 92.6 1.7e-26 1 CL0638
Cotton_A_27032_CDS 347 392 347 393 PF16488.5 ArgoL2 Family 1 46 47 38.1 1.4e-09 1 No_clan
Cotton_A_27032_CDS 530 823 527 823 PF02171.17 Piwi Family 16 302 302 326.0 2.1e-97 1 CL0219
Cotton_A_18431_CDS 15 37 15 37 PF00560.33 LRR_1 Repeat 1 23 23 19.0 0.0013 1 CL0022
Cotton_A_11891_CDS 27 147 25 148 PF01417.20 ENTH Domain 3 124 125 129.8 5.8e-38 1 CL0009
Cotton_A_19777_CDS 36 107 36 119 PF01221.18 Dynein_light Domain 1 74 86 84.9 3.6e-24 1 No_clan
Cotton_A_05418_CDS 11 172 9 184 PF03357.21 Snf7 Family 3 166 173 43.7 2.2e-11 1 CL0235
Cotton_A_29441_CDS 97 176 97 176 PF00226.31 DnaJ Domain 1 63 63 60.0 1.8e-16 1 CL0392
Cotton_A_29441_CDS 463 504 462 506 PF00249.31 Myb_DNA-binding Domain 2 38 46 25.8 8.8e-06 1 CL0123
Cotton_A_29441_CDS 591 634 589 638 PF00249.31 Myb_DNA-binding Domain 3 42 46 25.9 8.4e-06 1 CL0123
Cotton_A_16313_CDS 60 99 58 107 PF01344.25 Kelch_1 Repeat 3 35 46 24.8 1.2e-05 1 CL0186
Cotton_A_11546_CDS 1 120 1 122 PF00833.18 Ribosomal_S17e Family 1 120 122 201.2 3.8e-60 1 No_clan
Cotton_A_22789_CDS 14 59 14 142 PF08246.12 Inhibitor_I29 Domain 1 46 58 39.9 4.1e-10 1 No_clan
Cotton_A_22789_CDS 59 252 49 252 PF00112.23 Peptidase_C1 Domain 24 218 218 225.2 9.9e-67 1 CL0125
Cotton_A_01793_CDS 256 360 227 361 PF02926.17 THUMP Domain 48 143 144 50.3 2.5e-13 1 No_clan
Cotton_A_07659_CDS 11 58 7 59 PF04570.14 zf-FLZ Domain 5 53 54 78.2 2.2e-22 1 CL0175
Cotton_A_23231_CDS 48 286 48 286 PF13561.6 adh_short_C2 Domain 1 234 234 213.0 4.2e-63 1 CL0063
Cotton_A_12002_CDS 8 182 2 192 PF00069.25 Pkinase Domain 106 253 264 40.7 1.8e-10 1 CL0016
Cotton_A_12002_CDS 619 776 619 777 PF00069.25 Pkinase Domain 1 145 264 39.1 5.2e-10 1 CL0016
Cotton_A_12549_CDS 132 213 130 213 PF01985.21 CRS1_YhbY Domain 3 84 84 77.1 8.6e-22 1 No_clan
Cotton_A_12549_CDS 322 406 322 406 PF01985.21 CRS1_YhbY Domain 1 84 84 45.0 9.1e-12 1 No_clan
Cotton_A_12549_CDS 535 622 535 622 PF01985.21 CRS1_YhbY Domain 1 84 84 54.7 8.7e-15 1 No_clan
Cotton_A_38282_CDS 14 158 13 188 PF12657.7 TFIIIC_delta Domain 2 156 184 51.0 1.6e-13 1 No_clan
Cotton_A_38282_CDS 334 376 332 376 PF00400.32 WD40 Repeat 3 37 38 22.0 0.00021 1 CL0186
Cotton_A_38282_CDS 450 483 445 483 PF00400.32 WD40 Repeat 6 38 38 20.2 0.00079 1 CL0186
Cotton_A_22142_CDS 33 72 32 72 PF08263.12 LRRNT_2 Family 2 41 41 45.1 9.1e-12 1 No_clan
Cotton_A_26930_CDS 8 33 7 33 PF08513.11 LisH Domain 2 27 27 34.0 1.9e-08 1 CL0561
Cotton_A_26930_CDS 219 253 216 254 PF00400.32 WD40 Repeat 4 37 38 32.9 7.7e-08 1 CL0186
Cotton_A_26930_CDS 280 336 269 337 PF12894.7 ANAPC4_WD40 Repeat 33 91 92 23.6 4.6e-05 1 CL0186
Cotton_A_26930_CDS 401 436 399 437 PF00400.32 WD40 Repeat 3 37 38 31.2 2.5e-07 1 CL0186
Cotton_A_26930_CDS 443 488 441 488 PF00400.32 WD40 Repeat 3 38 38 21.3 0.00034 1 CL0186
Cotton_A_26930_CDS 492 530 492 530 PF00400.32 WD40 Repeat 1 38 38 37.0 4e-09 1 CL0186
Cotton_A_26930_CDS 534 569 534 571 PF00400.32 WD40 Repeat 1 36 38 12.1 0.28 1 CL0186
Cotton_A_20824_CDS 8 122 8 122 PF02136.20 NTF2 Domain 1 120 120 116.3 1.2e-33 1 CL0051
Cotton_A_29141_CDS 8 169 2 169 PF00069.25 Pkinase Domain 85 252 264 82.5 3.1e-23 1 CL0016
Cotton_A_03054_CDS 57 122 57 123 PF02148.19 zf-UBP Domain 1 63 64 41.9 9.4e-11 1 CL0229
Cotton_A_03054_CDS 204 272 204 313 PF00443.29 UCH Family 1 69 257 51.9 7.2e-14 1 CL0125
Cotton_A_01735_CDS 102 145 101 145 PF13639.6 zf-RING_2 Domain 2 44 44 45.9 5.3e-12 1 CL0229
Cotton_A_19891_CDS 110 428 110 440 PF00295.17 Glyco_hydro_28 Domain 1 309 325 303.5 1.6e-90 1 CL0268
Cotton_A_26003_CDS 213 265 211 273 PF00170.21 bZIP_1 Family 4 56 64 45.4 6.6e-12 1 CL0018
Cotton_A_26003_CDS 281 398 281 400 PF12498.8 bZIP_C Family 1 121 123 83.9 1.8e-23 1 No_clan
Cotton_A_04617_CDS 68 186 64 213 PF12146.8 Hydrolase_4 Family 5 125 239 41.7 7.5e-11 1 CL0028
Cotton_A_23826_CDS 1 313 1 313 PF03492.15 Methyltransf_7 Family 16 334 334 382.1 2.3e-114 1 CL0063
Cotton_A_21340_CDS 12 381 10 383 PF01238.21 PMI_typeI Family 3 371 373 342.2 3.9e-102 1 CL0029
Cotton_A_10028_CDS 23 86 23 86 PF00462.24 Glutaredoxin Domain 1 60 60 51.6 8.2e-14 1 CL0172
Cotton_A_39876_CDS 4 72 4 72 PF16205.5 Ribosomal_S17_N Family 1 69 69 106.2 8.2e-31 1 No_clan
Cotton_A_39876_CDS 74 142 74 142 PF00366.20 Ribosomal_S17 Domain 1 68 68 86.1 1.3e-24 1 CL0021
Cotton_A_15547_CDS 25 72 25 72 PF00249.31 Myb_DNA-binding Domain 1 46 46 47.3 1.8e-12 1 CL0123
Cotton_A_15547_CDS 78 121 78 122 PF00249.31 Myb_DNA-binding Domain 1 44 46 50.3 2e-13 1 CL0123
Cotton_A_01191_CDS 90 456 88 456 PF00155.21 Aminotran_1_2 Domain 3 363 363 310.5 1.6e-92 1 CL0061
Cotton_A_25706_CDS 3 52 3 52 PF04135.12 Nop10p Family 1 52 52 75.6 2.2e-21 1 No_clan
Cotton_A_32450_CDS 3 80 2 100 PF03732.17 Retrotrans_gag Family 14 83 96 25.0 1.7e-05 1 CL0523
Cotton_A_23003_CDS 10 65 10 66 PF00412.22 LIM Domain 1 57 58 44.2 1.7e-11 1 CL0167
Cotton_A_23003_CDS 97 152 97 153 PF00412.22 LIM Domain 1 57 58 40.5 2.4e-10 1 CL0167
Cotton_A_12128_CDS 8 35 4 35 PF01066.21 CDP-OH_P_transf Family 39 66 66 38.5 1.5e-09 1 No_clan
Cotton_A_11664_CDS 10 142 5 143 PF00179.26 UQ_con Domain 6 139 140 134.8 1.6e-39 1 CL0208
Cotton_A_09117_CDS 70 143 70 144 PF01336.25 tRNA_anti-codon Domain 1 75 76 40.1 2.7e-10 1 CL0021
Cotton_A_09117_CDS 159 272 159 273 PF08784.11 RPA_C Domain 1 103 104 64.1 1.6e-17 1 CL0123
Cotton_A_29716_CDS 76 146 73 146 PF02201.18 SWIB Domain 4 74 74 95.2 1.5e-27 1 No_clan
Cotton_A_39597_CDS 57 404 57 404 PF01264.21 Chorismate_synt Family 1 327 327 469.8 3.1e-141 1 No_clan
Cotton_A_14997_CDS 25 124 23 125 PF00383.23 dCMP_cyt_deam_1 Family 3 100 101 85.2 2.3e-24 1 CL0109
Cotton_A_02664_CDS 16 121 6 121 PF02519.14 Auxin_inducible Family 2 90 90 59.0 3.8e-16 1 No_clan
Cotton_A_08911_CDS 9 170 8 171 PF00160.21 Pro_isomerase Domain 2 157 158 171.0 2.2e-50 1 CL0475
Cotton_A_36491_CDS 59 369 58 369 PF03372.23 Exo_endo_phos Domain 2 233 233 59.2 4.2e-16 1 CL0530
Cotton_A_12699_CDS 72 139 72 141 PF00076.22 RRM_1 Domain 1 68 70 52.1 4.4e-14 1 CL0221
Cotton_A_12699_CDS 177 233 172 239 PF13865.6 FoP_duplication Family 4 61 81 31.5 1.9e-07 1 No_clan
Cotton_A_06722_CDS 41 119 40 119 PF00626.22 Gelsolin Domain 2 76 76 48.8 4.8e-13 1 CL0092
Cotton_A_06722_CDS 157 221 153 225 PF00626.22 Gelsolin Domain 5 69 76 37.9 1.2e-09 1 CL0092
Cotton_A_06722_CDS 272 339 268 343 PF00626.22 Gelsolin Domain 5 72 76 45.0 7.4e-12 1 CL0092
Cotton_A_06722_CDS 677 749 672 750 PF00626.22 Gelsolin Domain 8 75 76 36.1 4.4e-09 1 CL0092
Cotton_A_06722_CDS 963 998 963 998 PF02209.19 VHP Domain 1 36 36 54.3 1e-14 1 No_clan
Cotton_A_00880_CDS 109 198 93 199 PF01565.23 FAD_binding_4 Domain 48 138 139 55.7 4.1e-15 1 CL0077
Cotton_A_16393_CDS 27 164 23 165 PF00892.20 EamA Family 7 136 137 53.4 2.8e-14 1 CL0184
Cotton_A_16393_CDS 198 336 197 337 PF00892.20 EamA Family 2 136 137 63.5 2.3e-17 1 CL0184
Cotton_A_29740_CDS 2 242 1 256 PF00067.22 p450 Domain 206 450 463 199.9 6.3e-59 1 No_clan
Cotton_A_14725_CDS 17 133 17 133 PF02136.20 NTF2 Domain 1 120 120 104.8 4.1e-30 1 CL0051
Cotton_A_14725_CDS 305 363 305 372 PF00076.22 RRM_1 Domain 1 58 70 44.8 7.9e-12 1 CL0221
Cotton_A_33206_CDS 679 929 678 934 PF07064.13 RIC1 Family 2 247 252 234.3 1.4e-69 1 No_clan
Cotton_A_25965_CDS 44 274 44 274 PF00230.20 MIP Family 1 227 227 277.7 7.5e-83 1 No_clan
Cotton_A_25680_CDS 168 433 165 434 PF00664.23 ABC_membrane Family 4 273 274 91.7 5.8e-26 1 CL0241
Cotton_A_25680_CDS 506 636 503 637 PF00005.27 ABC_tran Domain 6 136 137 57.8 1.6e-15 1 CL0023
Cotton_A_25680_CDS 800 1026 783 1042 PF00664.23 ABC_membrane Family 22 249 274 98.7 4.5e-28 1 CL0241
Cotton_A_25680_CDS 1116 1264 1116 1264 PF00005.27 ABC_tran Domain 1 137 137 106.0 2.2e-30 1 CL0023
Cotton_A_40432_CDS 2 35 1 36 PF03463.15 eRF1_1 Domain 95 128 129 26.0 7.5e-06 1 CL0267
Cotton_A_32725_CDS 198 553 196 554 PF07690.16 MFS_1 Family 2 352 353 188.9 1.2e-55 1 CL0015
Cotton_A_19743_CDS 2 108 1 110 PF00069.25 Pkinase Domain 158 260 264 43.8 1.9e-11 1 CL0016
Cotton_A_38711_CDS 43 210 42 211 PF06884.11 DUF1264 Family 2 170 171 229.9 1.4e-68 1 No_clan
Cotton_A_05369_CDS 3 53 2 54 PF01907.19 Ribosomal_L37e Family 2 53 54 89.7 9.4e-26 1 CL0167
Cotton_A_31972_CDS 37 87 37 87 PF13415.6 Kelch_3 Domain 1 49 49 35.3 9.5e-09 1 CL0186
Cotton_A_31972_CDS 126 170 125 170 PF13854.6 Kelch_5 Repeat 2 42 42 27.5 2.3e-06 1 CL0186
Cotton_A_31972_CDS 184 226 184 234 PF13418.6 Kelch_4 Repeat 1 44 49 30.5 2.7e-07 1 CL0186
Cotton_A_31972_CDS 235 285 235 285 PF13418.6 Kelch_4 Repeat 1 49 49 40.6 1.8e-10 1 CL0186
Cotton_A_27871_CDS 66 113 65 114 PF01344.25 Kelch_1 Repeat 4 45 46 20.7 0.00022 1 CL0186
Cotton_A_27268_CDS 337 657 336 659 PF05843.14 Suf Family 2 294 296 242.9 7.2e-72 1 CL0020
Cotton_A_28656_CDS 94 154 93 154 PF00046.29 Homeodomain Domain 2 57 57 61.8 4.1e-17 1 CL0123
Cotton_A_09623_CDS 152 209 152 209 PF03106.15 WRKY Domain 1 59 59 92.6 1.3e-26 1 CL0274
Cotton_A_00131_CDS 6 60 2 60 PF07333.12 SLR1-BP Domain 5 58 58 44.2 2e-11 1 CL0054
Cotton_A_04126_CDS 16 157 14 158 PF00892.20 EamA Family 3 136 137 43.7 2.9e-11 1 CL0184
Cotton_A_04126_CDS 191 330 190 331 PF00892.20 EamA Family 2 136 137 53.7 2.3e-14 1 CL0184
Cotton_A_24163_CDS 22 291 20 291 PF06454.11 DUF1084 Family 3 273 273 425.4 8.6e-128 1 No_clan
Cotton_A_02897_CDS 24 340 24 342 PF00332.18 Glyco_hydro_17 Domain 1 311 313 284.1 1.6e-84 1 CL0058
Cotton_A_24477_CDS 116 214 113 216 PF00254.28 FKBP_C Domain 4 92 94 86.0 1.6e-24 1 CL0487
Cotton_A_04391_CDS 80 175 78 176 PF00168.30 C2 Domain 3 102 103 61.4 8.4e-17 1 CL0154
Cotton_A_04391_CDS 243 309 228 319 PF02893.20 GRAM Domain 18 76 114 44.2 1.5e-11 1 CL0266
Cotton_A_04391_CDS 414 559 413 560 PF16016.5 VASt Domain 2 153 154 116.7 1.2e-33 1 CL0209
Cotton_A_20655_CDS 10 227 9 258 PF00069.25 Pkinase Domain 2 212 264 91.3 6.5e-26 1 CL0016
Cotton_A_20050_CDS 105 389 104 390 PF04515.12 Choline_transpo Family 2 325 326 95.5 3.4e-27 1 No_clan
Cotton_A_20962_CDS 314 624 311 624 PF04484.12 QWRF Family 4 300 300 376.5 1.3e-112 1 No_clan
Cotton_A_02988_CDS 20 557 19 557 PF06101.11 Vps62 Family 2 542 542 854.5 2.5e-257 1 No_clan
Cotton_A_11227_CDS 15 178 15 178 PF00929.24 RNase_T Family 1 165 165 88.5 6.9e-25 1 CL0219
Cotton_A_02182_CDS 8 387 8 387 PF00180.20 Iso_dh Domain 1 348 348 234.2 2.3e-69 1 CL0270
Cotton_A_40328_CDS 110 261 110 261 PF14538.6 Raptor_N Domain 1 147 147 227.6 5.4e-68 1 CL0093
Cotton_A_05707_CDS 166 221 166 221 PF02045.15 CBFB_NFYA Family 1 56 56 92.3 2.1e-26 1 No_clan
Cotton_A_06037_CDS 69 130 69 130 PF16177.5 ACAS_N Family 1 55 55 71.0 5.8e-20 1 CL0378
Cotton_A_06037_CDS 140 592 132 593 PF00501.28 AMP-binding Family 9 422 423 324.2 9.8e-97 1 CL0378
Cotton_A_06037_CDS 601 679 601 679 PF13193.6 AMP-binding_C Domain 1 76 76 82.0 4.4e-23 1 CL0531
Cotton_A_27821_CDS 77 306 75 311 PF05057.14 DUF676 Family 3 214 219 210.9 1.6e-62 1 CL0028
Cotton_A_38069_CDS 515 721 515 722 PF00924.18 MS_channel Family 1 205 206 87.6 8.2e-25 1 No_clan
Cotton_A_00053_CDS 136 274 136 274 PF10063.9 DUF2301 Family 1 135 135 185.2 6.6e-55 1 No_clan
Cotton_A_13695_CDS 21 62 20 62 PF08263.12 LRRNT_2 Family 2 41 41 29.3 7.8e-07 1 No_clan
Cotton_A_01026_CDS 10 432 9 432 PF03547.18 Mem_trans Family 2 387 387 185.0 1.4e-54 1 CL0064
Cotton_A_25983_CDS 1 75 1 76 PF02798.20 GST_N Domain 1 75 76 43.5 2.9e-11 1 CL0172
Cotton_A_25983_CDS 131 202 130 203 PF13410.6 GST_C_2 Domain 2 68 69 25.0 1.4e-05 1 CL0497
Cotton_A_29496_CDS 169 225 169 226 PF03106.15 WRKY Domain 1 58 59 89.3 1.3e-25 1 CL0274
Cotton_A_09479_CDS 56 147 56 147 PF08609.10 Fes1 Family 1 93 93 57.1 2.5e-15 1 No_clan
Cotton_A_34778_CDS 128 411 119 420 PF00459.25 Inositol_P Family 11 240 272 136.4 1.3e-39 1 CL0171
Cotton_A_11801_CDS 44 183 38 185 PF10604.9 Polyketide_cyc2 Family 7 141 143 53.5 2.9e-14 1 CL0209
Cotton_A_29177_CDS 36 77 36 78 PF01344.25 Kelch_1 Repeat 1 42 46 35.7 4.7e-09 1 CL0186
Cotton_A_29177_CDS 150 196 150 200 PF13418.6 Kelch_4 Repeat 1 45 49 39.1 5.5e-10 1 CL0186
Cotton_A_29177_CDS 213 258 212 261 PF13415.6 Kelch_3 Domain 2 46 49 32.5 7.6e-08 1 CL0186
Cotton_A_19809_CDS 96 331 85 333 PF13714.6 PEP_mutase Domain 12 237 239 166.2 8.2e-49 1 CL0151
Cotton_A_38812_CDS 69 120 69 121 PF09713.10 A_thal_3526 Domain 1 52 53 91.9 2.1e-26 1 No_clan
Cotton_A_23709_CDS 59 523 58 524 PF00982.21 Glyco_transf_20 Family 2 473 474 599.9 3.1e-180 1 CL0113
Cotton_A_23709_CDS 584 776 575 806 PF02358.16 Trehalose_PPase Family 18 204 233 165.6 9.4e-49 1 CL0137
Cotton_A_33271_CDS 2 105 1 125 PF03321.13 GH3 Family 7 115 527 117.4 7.8e-34 1 CL0378
Cotton_A_33271_CDS 122 165 117 170 PF03321.13 GH3 Family 339 380 527 48.0 8.4e-13 1 CL0378
Cotton_A_04568_CDS 63 334 61 336 PF00491.21 Arginase Domain 3 277 280 224.9 1.3e-66 1 CL0302
Cotton_A_19133_CDS 568 799 568 811 PF09258.10 Glyco_transf_64 Domain 1 232 245 209.3 5.4e-62 1 CL0110
Cotton_A_16608_CDS 106 334 71 386 PF00923.19 TAL_FSA Domain 29 239 287 162.2 1.7e-47 1 CL0036
Cotton_A_01265_CDS 30 363 24 363 PF00704.28 Glyco_hydro_18 Domain 4 312 312 209.7 8.4e-62 1 CL0058
Cotton_A_01265_CDS 460 727 457 728 PF07714.17 Pkinase_Tyr Domain 4 258 259 153.9 4.6e-45 1 CL0016
Cotton_A_07848_CDS 62 117 62 117 PF16450.5 Prot_ATP_ID_OB Domain 1 57 57 38.6 7.8e-10 1 CL0021
Cotton_A_07848_CDS 175 308 175 308 PF00004.29 AAA Domain 1 132 132 143.7 4.3e-42 1 CL0023
Cotton_A_07848_CDS 331 373 330 374 PF17862.1 AAA_lid_3 Domain 2 44 45 38.0 1.1e-09 1 CL0671
Cotton_A_18493_CDS 13 78 12 78 PF00226.31 DnaJ Domain 2 63 63 80.6 6.7e-23 1 CL0392
Cotton_A_15339_CDS 15 268 15 269 PF00069.25 Pkinase Domain 1 263 264 224.3 1.7e-66 1 CL0016
Cotton_A_30557_CDS 114 170 114 170 PF06886.11 TPX2 Family 1 57 57 64.4 8.3e-18 1 No_clan
Cotton_A_26468_CDS 35 75 34 75 PF08263.12 LRRNT_2 Family 2 41 41 38.3 1.2e-09 1 No_clan
Cotton_A_26468_CDS 254 312 254 313 PF13855.6 LRR_8 Repeat 2 60 61 36.0 4.2e-09 1 CL0022
Cotton_A_26468_CDS 470 529 469 529 PF13855.6 LRR_8 Repeat 2 61 61 33.0 3.8e-08 1 CL0022
Cotton_A_05802_CDS 145 321 137 324 PF04142.15 Nuc_sug_transp Family 133 312 315 66.3 2.5e-18 1 CL0184
Cotton_A_05802_CDS 611 944 611 944 PF13086.6 AAA_11 Domain 1 261 261 104.5 7.8e-30 1 CL0023
Cotton_A_05802_CDS 952 1152 951 1153 PF13087.6 AAA_12 Domain 2 198 199 182.5 6.7e-54 1 CL0023
Cotton_A_05147_CDS 13 62 6 65 PF00403.26 HMA Domain 8 60 62 36.9 3.6e-09 1 No_clan
Cotton_A_05147_CDS 121 168 117 173 PF00403.26 HMA Domain 9 59 62 29.7 6.7e-07 1 No_clan
Cotton_A_00166_CDS 169 281 168 281 PF13640.6 2OG-FeII_Oxy_3 Domain 2 96 96 66.3 3.4e-18 1 CL0029
Cotton_A_08319_CDS 65 164 58 164 PF01477.23 PLAT Domain 14 117 117 60.2 2.8e-16 1 CL0321
Cotton_A_08319_CDS 177 850 177 850 PF00305.19 Lipoxygenase Domain 1 674 674 1059.9 0 1 No_clan
Cotton_A_36237_CDS 161 213 160 222 PF00170.21 bZIP_1 Family 3 55 64 47.2 1.7e-12 1 CL0018
Cotton_A_02041_CDS 58 207 55 216 PF00069.25 Pkinase Domain 98 251 264 137.8 4.2e-40 1 CL0016
Cotton_A_08095_CDS 197 269 194 269 PF13424.6 TPR_12 Repeat 4 76 77 33.0 5.5e-08 1 CL0020
Cotton_A_08095_CDS 285 353 279 354 PF13424.6 TPR_12 Repeat 8 76 77 32.3 9.2e-08 1 CL0020
Cotton_A_08095_CDS 367 439 364 440 PF13424.6 TPR_12 Repeat 4 76 77 45.6 6.2e-12 1 CL0020
Cotton_A_08095_CDS 453 488 453 490 PF13374.6 TPR_10 Repeat 5 40 42 26.3 4.6e-06 1 CL0020
Cotton_A_23820_CDS 2 161 2 162 PF04695.13 Pex14_N Family 1 156 157 59.3 6.8e-16 1 No_clan
Cotton_A_04997_CDS 21 69 20 70 PF00847.20 AP2 Domain 3 53 54 49.6 3.4e-13 1 CL0081
Cotton_A_30910_CDS 2 100 1 103 PF02463.19 SMC_N Domain 8 103 220 91.3 5.7e-26 1 CL0023
Cotton_A_05376_CDS 97 446 96 447 PF03759.13 PRONE Family 2 362 363 576.5 1.8e-173 1 No_clan
Cotton_A_15220_CDS 5 67 3 67 PF13499.6 EF-hand_7 Domain 3 71 71 48.2 1.1e-12 1 CL0220
Cotton_A_15220_CDS 76 142 76 142 PF13499.6 EF-hand_7 Domain 1 71 71 52.9 3.8e-14 1 CL0220
Cotton_A_03027_CDS 18 69 17 69 PF00847.20 AP2 Domain 2 54 54 50.6 1.6e-13 1 CL0081
Cotton_A_10505_CDS 30 99 28 99 PF04739.15 AMPKBI Family 3 75 75 71.7 4.4e-20 1 No_clan
Cotton_A_02019_CDS 87 203 83 227 PF01925.19 TauE Family 3 110 236 36.8 3.1e-09 1 CL0292
Cotton_A_02019_CDS 264 441 253 448 PF01925.19 TauE Family 73 234 236 50.1 2.7e-13 1 CL0292
Cotton_A_08363_CDS 13 73 11 74 PF13499.6 EF-hand_7 Domain 4 70 71 56.6 2.6e-15 1 CL0220
Cotton_A_08363_CDS 83 146 83 147 PF13499.6 EF-hand_7 Domain 1 70 71 69.5 2.5e-19 1 CL0220
Cotton_A_22573_CDS 54 157 54 157 PF00011.21 HSP20 Family 1 102 102 111.9 1.3e-32 1 CL0190
Cotton_A_19940_CDS 57 103 51 106 PF00571.28 CBS Domain 7 53 57 30.6 3.3e-07 1 No_clan
Cotton_A_19940_CDS 117 161 117 168 PF00571.28 CBS Domain 1 46 57 27.4 3.4e-06 1 No_clan
Cotton_A_19940_CDS 225 271 219 274 PF00571.28 CBS Domain 6 53 57 21.5 0.00024 1 No_clan
Cotton_A_19940_CDS 285 332 285 340 PF00571.28 CBS Domain 1 48 57 28.5 1.5e-06 1 No_clan
Cotton_A_19940_CDS 409 489 406 491 PF00564.24 PB1 Domain 4 82 84 54.5 8.1e-15 1 CL0072
Cotton_A_29365_CDS 19 299 18 313 PF00443.29 UCH Family 2 226 257 138.0 3.9e-40 1 CL0125
Cotton_A_05436_CDS 4 288 1 289 PF01301.19 Glyco_hydro_35 Domain 22 315 316 353.2 1.6e-105 1 CL0058
Cotton_A_05436_CDS 296 367 296 367 PF17834.1 GHD Domain 1 72 72 93.7 5.3e-27 1 CL0369
Cotton_A_05436_CDS 712 789 712 789 PF02140.18 Gal_Lectin Domain 1 80 80 71.3 7e-20 1 No_clan
Cotton_A_36142_CDS 7 38 7 38 PF14364.6 DUF4408 Family 2 33 33 31.3 1.2e-07 1 No_clan
Cotton_A_40396_CDS 11 135 10 156 PF01073.19 3Beta_HSD Family 2 121 280 56.0 2.9e-15 1 CL0063
Cotton_A_32839_CDS 14 117 14 117 PF02991.16 Atg8 Domain 1 104 104 168.5 3.5e-50 1 CL0072
Cotton_A_29458_CDS 70 130 36 134 PF05922.16 Inhibitor_I9 Domain 15 78 82 47.8 1.7e-12 1 CL0570
Cotton_A_29458_CDS 159 659 159 672 PF00082.22 Peptidase_S8 Domain 1 285 298 137.5 5.4e-40 1 No_clan
Cotton_A_29458_CDS 725 819 725 819 PF17766.1 fn3_6 Domain 1 99 99 43.9 2.1e-11 1 CL0159
Cotton_A_26006_CDS 16 198 15 199 PF02309.16 AUX_IAA Family 2 235 237 193.1 6.4e-57 1 CL0072
Cotton_A_37008_CDS 215 268 213 275 PF00170.21 bZIP_1 Family 4 57 64 43.9 1.8e-11 1 CL0018
Cotton_A_37008_CDS 283 403 283 405 PF12498.8 bZIP_C Family 1 121 123 87.8 1.1e-24 1 No_clan
Cotton_A_25226_CDS 3 77 3 77 PF08571.10 Yos1 Family 1 80 80 87.5 5.1e-25 1 No_clan
Cotton_A_21639_CDS 50 81 47 82 PF00046.29 Homeodomain Domain 25 56 57 24.4 1.9e-05 1 CL0123
Cotton_A_21639_CDS 83 114 83 118 PF02183.18 HALZ Coiled-coil 1 39 43 31.5 1.5e-07 1 No_clan
Cotton_A_18883_CDS 104 413 102 420 PF03016.15 Exostosin Family 3 296 300 206.0 7.2e-61 1 No_clan
Cotton_A_34848_CDS 77 136 76 137 PF13855.6 LRR_8 Repeat 2 60 61 33.7 2.3e-08 1 CL0022
Cotton_A_34848_CDS 230 257 230 274 PF00560.33 LRR_1 Repeat 1 13 23 10.4 0.86 1 CL0022
Cotton_A_34848_CDS 324 383 320 383 PF13855.6 LRR_8 Repeat 2 61 61 30.8 1.8e-07 1 CL0022
Cotton_A_34848_CDS 451 510 431 510 PF13855.6 LRR_8 Repeat 2 61 61 38.6 6.5e-10 1 CL0022
Cotton_A_08881_CDS 21 159 20 160 PF03018.14 Dirigent Family 2 147 148 131.5 2e-38 1 CL0650
Cotton_A_26400_CDS 78 114 75 121 PF00646.33 F-box Domain 4 40 48 34.3 1.5e-08 1 CL0271
Cotton_A_23962_CDS 34 428 32 428 PF01266.24 DAO Domain 3 352 352 221.9 1.8e-65 1 CL0063
Cotton_A_20055_CDS 433 661 432 663 PF04842.12 DUF639 Family 2 228 231 205.5 7.3e-61 1 CL0484
Cotton_A_18968_CDS 2 362 1 363 PF00501.28 AMP-binding Family 52 422 423 321.2 7.8e-96 1 CL0378
Cotton_A_18968_CDS 371 446 371 446 PF13193.6 AMP-binding_C Domain 1 76 76 62.0 7.7e-17 1 CL0531
Cotton_A_15816_CDS 45 162 40 163 PF12689.7 Acid_PPase Family 43 168 169 100.4 9.4e-29 1 CL0137
Cotton_A_12771_CDS 314 819 314 820 PF03141.16 Methyltransf_29 Family 1 505 506 752.1 2.5e-226 1 CL0063
Cotton_A_31102_CDS 8 258 3 262 PF00664.23 ABC_membrane Family 28 270 274 118.3 4.8e-34 1 CL0241
Cotton_A_31102_CDS 349 522 349 522 PF00005.27 ABC_tran Domain 1 137 137 100.3 1.2e-28 1 CL0023
Cotton_A_08611_CDS 30 119 29 119 PF00854.21 PTR2 Family 2 76 395 56.4 2.3e-15 1 CL0015
Cotton_A_01103_CDS 89 157 88 160 PF09366.10 DUF1997 Family 2 69 154 40.0 4.2e-10 1 No_clan
Cotton_A_04368_CDS 9 97 5 131 PF18052.1 Rx_N Domain 1 84 93 78.0 4.8e-22 1 No_clan
Cotton_A_04368_CDS 187 265 151 270 PF00931.22 NB-ARC Domain 92 164 252 44.9 7.9e-12 1 CL0023
Cotton_A_31443_CDS 32 63 32 69 PF13774.6 Longin Domain 1 33 84 27.5 2.4e-06 1 No_clan
Cotton_A_05420_CDS 8 128 8 128 PF01778.17 Ribosomal_L28e Family 1 115 115 120.1 7.7e-35 1 No_clan
Cotton_A_09756_CDS 226 378 213 384 PF00201.18 UDPGT Family 268 409 499 96.0 2.3e-27 1 CL0113
Cotton_A_35455_CDS 78 366 31 377 PF03097.18 BRO1 Domain 68 349 389 86.9 1.2e-24 1 No_clan
Cotton_A_05851_CDS 22 260 16 261 PF13561.6 adh_short_C2 Domain 4 232 234 165.1 1.9e-48 1 CL0063
Cotton_A_13591_CDS 16 100 5 101 PF11837.8 DUF3357 Family 13 108 109 46.4 4.5e-12 1 No_clan
Cotton_A_13591_CDS 109 428 109 428 PF00251.20 Glyco_hydro_32N Domain 1 305 305 340.1 1.4e-101 1 CL0143
Cotton_A_13591_CDS 431 618 431 618 PF08244.12 Glyco_hydro_32C Domain 1 158 158 93.3 1.5e-26 1 CL0004
Cotton_A_11888_CDS 9 78 8 85 PF14365.6 Neprosin_AP Family 2 73 118 81.6 6.1e-23 1 No_clan
Cotton_A_11888_CDS 96 318 96 318 PF03080.15 Neprosin Family 1 222 222 235.7 3.7e-70 1 No_clan
Cotton_A_24763_CDS 39 94 39 94 PF08246.12 Inhibitor_I29 Domain 1 58 58 49.1 5.9e-13 1 No_clan
Cotton_A_24763_CDS 127 343 127 343 PF00112.23 Peptidase_C1 Domain 1 218 218 281.7 5.1e-84 1 CL0125
Cotton_A_10974_CDS 21 104 21 108 PF16561.5 AMPK1_CBM Family 1 81 85 87.5 5.3e-25 1 CL0369
Cotton_A_10974_CDS 347 394 341 398 PF00571.28 CBS Domain 6 53 57 30.9 2.7e-07 1 No_clan
Cotton_A_10974_CDS 431 477 423 478 PF00571.28 CBS Domain 11 56 57 33.1 5.6e-08 1 No_clan
Cotton_A_38561_CDS 79 162 78 168 PF00120.24 Gln-synt_C Domain 2 93 345 33.9 1.7e-08 1 CL0286
Cotton_A_38561_CDS 180 233 175 235 PF00120.24 Gln-synt_C Domain 87 140 345 33.3 2.6e-08 1 CL0286
Cotton_A_38561_CDS 234 384 231 390 PF00120.24 Gln-synt_C Domain 203 338 345 82.0 3.8e-23 1 CL0286
Cotton_A_12129_CDS 44 304 44 304 PF00685.27 Sulfotransfer_1 Domain 1 267 267 209.2 7.6e-62 1 CL0023
Cotton_A_09546_CDS 31 341 30 342 PF00657.22 Lipase_GDSL Family 2 199 200 76.1 3.6e-21 1 CL0264
Cotton_A_06882_CDS 30 77 28 78 PF13920.6 zf-C3HC4_3 Domain 3 48 50 37.7 1.4e-09 1 CL0229
Cotton_A_11602_CDS 56 124 31 126 PF01397.21 Terpene_synth Domain 97 164 192 32.7 5.6e-08 1 No_clan
Cotton_A_11602_CDS 152 206 152 213 PF03936.16 Terpene_synth_C Domain 1 55 267 53.3 2.4e-14 1 CL0613
Cotton_A_27563_CDS 10 84 6 85 PF00574.23 CLP_protease Domain 34 108 182 98.7 3.5e-28 1 CL0127
Cotton_A_16175_CDS 32 124 31 124 PF01657.17 Stress-antifung Family 2 95 95 48.4 1.1e-12 1 No_clan
Cotton_A_16175_CDS 144 231 138 231 PF01657.17 Stress-antifung Family 9 95 95 47.4 2.2e-12 1 No_clan
Cotton_A_16175_CDS 316 586 315 591 PF00069.25 Pkinase Domain 2 260 264 155.8 1.3e-45 1 CL0016
Cotton_A_39869_CDS 66 154 63 154 PF04576.15 Zein-binding Family 4 92 92 109.6 6.9e-32 1 No_clan
Cotton_A_04906_CDS 1 77 1 78 PF02536.14 mTERF Family 236 313 314 79.7 1.7e-22 1 No_clan
Cotton_A_18398_CDS 20 156 14 158 PF00892.20 EamA Family 8 135 137 31.7 1.5e-07 1 CL0184
Cotton_A_18398_CDS 186 325 185 326 PF00892.20 EamA Family 2 136 137 38.8 9.2e-10 1 CL0184
Cotton_A_30047_CDS 526 608 526 611 PF02214.22 BTB_2 Domain 1 91 94 43.5 3.1e-11 1 CL0033
Cotton_A_18506_CDS 62 212 61 212 PF04043.15 PMEI Domain 2 154 154 75.2 6.9e-21 1 No_clan
Cotton_A_18506_CDS 418 713 418 717 PF01095.19 Pectinesterase Family 1 295 298 386.5 5.5e-116 1 CL0268
Cotton_A_01276_CDS 17 197 2 242 PF00069.25 Pkinase Domain 57 221 264 117.1 8.4e-34 1 CL0016
Cotton_A_35357_CDS 9 66 7 66 PF13456.6 RVT_3 Domain 66 124 124 31.2 1.5e-07 1 CL0219
Cotton_A_32058_CDS 144 222 142 225 PF16561.5 AMPK1_CBM Family 3 81 85 81.0 5.6e-23 1 CL0369
Cotton_A_32058_CDS 255 324 254 325 PF04739.15 AMPKBI Family 2 74 75 62.0 4.9e-17 1 No_clan
Cotton_A_25309_CDS 2 93 1 119 PF13947.6 GUB_WAK_bind Domain 8 99 106 36.1 8.8e-09 1 No_clan
Cotton_A_25309_CDS 277 542 274 544 PF00069.25 Pkinase Domain 4 260 264 150.7 4.7e-44 1 CL0016
Cotton_A_34871_CDS 46 245 39 245 PF06045.11 Rhamnogal_lyase Family 12 213 213 250.7 9.1e-75 1 CL0103
Cotton_A_34871_CDS 402 475 401 475 PF14686.6 fn3_3 Domain 2 75 75 79.1 1.5e-22 1 CL0287
Cotton_A_34871_CDS 488 674 488 675 PF14683.6 CBM-like Domain 1 164 165 168.3 1.2e-49 1 CL0202
Cotton_A_32514_CDS 29 93 26 93 PF02874.23 ATP-synt_ab_N Domain 5 69 69 59.5 3.3e-16 1 CL0275
Cotton_A_32514_CDS 150 365 150 365 PF00006.25 ATP-synt_ab Domain 1 213 213 252.8 2.5e-75 1 CL0023
Cotton_A_32514_CDS 372 496 372 497 PF00306.27 ATP-synt_ab_C Domain 1 125 126 141.6 1.5e-41 1 No_clan
Cotton_A_02351_CDS 130 412 125 413 PF06814.13 Lung_7-TM_R Family 7 294 295 154.4 3.7e-45 1 CL0192
Cotton_A_07715_CDS 6 88 4 92 PF00743.19 FMO-like Family 3 74 532 30.3 1.4e-07 1 CL0063
Cotton_A_07715_CDS 203 297 193 311 PF00743.19 FMO-like Family 306 410 532 29.9 1.9e-07 1 CL0063
Cotton_A_30398_CDS 117 143 117 147 PF01535.20 PPR Family 1 27 31 23.2 5.4e-05 1 CL0020
Cotton_A_30398_CDS 145 191 145 194 PF13041.6 PPR_2 Repeat 1 47 50 32.8 5.8e-08 1 CL0020
Cotton_A_30398_CDS 225 248 225 251 PF01535.20 PPR Family 4 27 31 11.9 0.2 1 CL0020
Cotton_A_30398_CDS 250 298 250 299 PF13041.6 PPR_2 Repeat 1 49 50 44.8 1e-11 1 CL0020
Cotton_A_30398_CDS 492 632 489 632 PF11721.8 Malectin Domain 5 165 165 74.6 9.6e-21 1 CL0202
Cotton_A_30398_CDS 833 1153 833 1153 PF00225.23 Kinesin Domain 1 333 333 368.7 2.2e-110 1 CL0023
Cotton_A_01307_CDS 123 517 121 517 PF05686.12 Glyco_transf_90 Family 3 396 396 630.1 1.4e-189 1 CL0113
Cotton_A_30355_CDS 21 104 15 132 PF00071.22 Ras Domain 18 101 162 98.3 3.4e-28 1 CL0023
Cotton_A_07152_CDS 1 111 1 111 PF04618.12 HD-ZIP_N Domain 1 110 110 103.0 1.3e-29 1 No_clan
Cotton_A_07152_CDS 137 191 136 192 PF00046.29 Homeodomain Domain 2 56 57 59.4 2.3e-16 1 CL0123
Cotton_A_07152_CDS 193 227 193 228 PF02183.18 HALZ Coiled-coil 1 42 43 43.3 3.1e-11 1 No_clan
Cotton_A_11687_CDS 98 205 96 205 PF00289.22 Biotin_carb_N Domain 3 110 110 133.6 3.8e-39 1 CL0483
Cotton_A_11687_CDS 210 253 210 256 PF02786.17 CPSase_L_D2 Domain 1 44 211 34.7 1.2e-08 1 CL0179
Cotton_A_11687_CDS 307 471 304 473 PF02786.17 CPSase_L_D2 Domain 44 209 211 219.7 3e-65 1 CL0179
Cotton_A_11687_CDS 485 590 485 592 PF02785.19 Biotin_carb_C Domain 1 106 108 130.0 3.6e-38 1 CL0105
Cotton_A_40611_CDS 66 121 64 122 PF02701.15 zf-Dof Family 3 58 59 110.4 3.4e-32 1 No_clan
Cotton_A_03212_CDS 34 70 34 71 PF09253.10 Ole-e-6 Domain 1 37 39 37.3 1.9e-09 1 No_clan
Cotton_A_24936_CDS 234 604 233 604 PF03081.15 Exo70 Family 2 376 376 351.8 4.5e-105 1 CL0295
Cotton_A_02249_CDS 48 100 47 103 PF00013.29 KH_1 Domain 2 54 66 31.7 9.9e-08 1 CL0007
Cotton_A_02249_CDS 143 210 143 212 PF00013.29 KH_1 Domain 1 64 66 51.7 5.8e-14 1 CL0007
Cotton_A_02249_CDS 265 313 264 320 PF00013.29 KH_1 Domain 2 51 66 39.4 4e-10 1 CL0007
Cotton_A_02249_CDS 349 407 349 417 PF00013.29 KH_1 Domain 1 55 66 45.0 7.1e-12 1 CL0007
Cotton_A_29230_CDS 276 352 274 379 PF13962.6 PGG Domain 6 79 116 40.5 2e-10 1 No_clan
Cotton_A_05118_CDS 262 309 262 309 PF12906.7 RINGv Domain 1 48 48 40.4 2.3e-10 1 CL0229
Cotton_A_04329_CDS 1 41 1 45 PF13724.6 DNA_binding_2 Domain 1 44 47 61.8 6e-17 1 No_clan
Cotton_A_04329_CDS 244 300 244 301 PF04844.13 Ovate Family 1 57 58 87.2 5.3e-25 1 No_clan
Cotton_A_18991_CDS 105 165 104 166 PF05180.12 zf-DNL Domain 2 63 64 88.0 2.9e-25 1 No_clan
Cotton_A_12979_CDS 13 322 12 338 PF01207.17 Dus Family 2 297 310 186.9 4.6e-55 1 CL0036
Cotton_A_30789_CDS 8 171 7 172 PF00160.21 Pro_isomerase Domain 2 157 158 168.5 1.3e-49 1 CL0475
Cotton_A_30789_CDS 299 331 298 331 PF07719.17 TPR_2 Repeat 2 34 34 25.8 7e-06 1 CL0020
Cotton_A_01235_CDS 35 121 35 121 PF02298.17 Cu_bind_like Domain 1 84 84 88.3 2.5e-25 1 CL0026
Cotton_A_15092_CDS 22 155 19 164 PF00582.26 Usp Domain 5 134 141 33.2 6.6e-08 1 CL0039
Cotton_A_15092_CDS 468 539 434 541 PF02519.14 Auxin_inducible Family 17 87 90 77.4 6.9e-22 1 No_clan
Cotton_A_15796_CDS 133 160 133 161 PF08799.11 PRP4 Domain 1 28 29 44.4 8.3e-12 1 No_clan
Cotton_A_15796_CDS 300 335 298 335 PF00400.32 WD40 Repeat 4 38 38 20.7 0.00056 1 CL0186
Cotton_A_15796_CDS 338 376 338 376 PF00400.32 WD40 Repeat 1 38 38 22.0 0.00022 1 CL0186
Cotton_A_15796_CDS 387 418 382 418 PF00400.32 WD40 Repeat 8 38 38 21.8 0.00024 1 CL0186
Cotton_A_15796_CDS 425 460 422 460 PF00400.32 WD40 Repeat 4 38 38 33.8 4.1e-08 1 CL0186
Cotton_A_15796_CDS 508 544 507 545 PF00400.32 WD40 Repeat 2 37 38 25.4 1.8e-05 1 CL0186
Cotton_A_14168_CDS 2 74 1 86 PF00025.21 Arf Domain 37 109 175 105.1 2.7e-30 1 CL0023
Cotton_A_00361_CDS 60 419 58 420 PF03759.13 PRONE Family 3 362 363 602.1 2.9e-181 1 No_clan
Cotton_A_05717_CDS 266 488 182 491 PF03062.19 MBOAT Family 100 345 348 91.1 8.7e-26 1 CL0517
Cotton_A_11481_CDS 69 755 20 755 PF03030.16 H_PPase Family 21 650 650 860.2 1.1e-258 1 No_clan
Cotton_A_19538_CDS 10 568 9 569 PF03321.13 GH3 Family 2 526 527 496.8 8.4e-149 1 CL0378
Cotton_A_03984_CDS 199 220 198 223 PF13540.6 RCC1_2 Repeat 4 25 30 22.2 8.8e-05 1 CL0186
Cotton_A_03984_CDS 234 258 232 259 PF13540.6 RCC1_2 Repeat 4 28 30 24.7 1.4e-05 1 CL0186
Cotton_A_03984_CDS 462 681 461 746 PF00069.25 Pkinase Domain 2 204 264 155.6 1.5e-45 1 CL0016
Cotton_A_28117_CDS 30 76 24 76 PF13857.6 Ank_5 Repeat 11 55 56 34.7 1.5e-08 1 CL0465
Cotton_A_13475_CDS 99 138 99 138 PF13878.6 zf-C2H2_3 Domain 1 40 40 48.4 5.8e-13 1 CL0361
Cotton_A_13475_CDS 286 353 285 353 PF13880.6 Acetyltransf_13 Domain 2 69 69 92.1 1.5e-26 1 CL0257
Cotton_A_33451_CDS 10 332 9 332 PF03547.18 Mem_trans Family 2 371 387 302.9 2.2e-90 1 CL0064
Cotton_A_10000_CDS 22 188 14 188 PF04525.12 LOR Domain 13 187 187 137.1 4.9e-40 1 CL0395
Cotton_A_32869_CDS 95 159 93 164 PF14223.6 Retrotran_gag_2 Family 68 132 138 48.9 4.9e-13 1 CL0523
Cotton_A_22972_CDS 2 69 2 70 PF12041.8 DELLA Domain 1 68 69 121.7 8.3e-36 1 No_clan
Cotton_A_25347_CDS 12 313 6 314 PF00389.30 2-Hacid_dh Domain 7 133 134 78.5 3.5e-22 1 CL0325
Cotton_A_25347_CDS 110 282 110 282 PF02826.19 2-Hacid_dh_C Domain 1 178 178 170.6 2e-50 1 CL0063
Cotton_A_27146_CDS 28 74 27 74 PF00319.18 SRF-TF Domain 2 48 48 78.5 1.9e-22 1 No_clan
Cotton_A_22835_CDS 34 269 27 272 PF00141.23 peroxidase Domain 8 226 229 249.6 3e-74 1 CL0617
Cotton_A_07872_CDS 13 41 11 41 PF01535.20 PPR Family 3 31 31 16.9 0.0052 1 CL0020
Cotton_A_07872_CDS 42 72 42 72 PF01535.20 PPR Family 1 31 31 25.9 7e-06 1 CL0020
Cotton_A_07872_CDS 73 103 73 103 PF01535.20 PPR Family 1 31 31 18.4 0.0018 1 CL0020
Cotton_A_07872_CDS 104 133 104 134 PF01535.20 PPR Family 1 30 31 29.5 5.1e-07 1 CL0020
Cotton_A_07872_CDS 136 165 135 165 PF01535.20 PPR Family 2 31 31 22.7 7.9e-05 1 CL0020
Cotton_A_07872_CDS 166 196 166 196 PF01535.20 PPR Family 1 31 31 33.2 3.4e-08 1 CL0020
Cotton_A_07872_CDS 197 224 197 227 PF01535.20 PPR Family 1 28 31 26.7 3.9e-06 1 CL0020
Cotton_A_07872_CDS 303 325 302 326 PF01535.20 PPR Family 2 24 31 18.2 0.0021 1 CL0020
Cotton_A_07872_CDS 361 406 361 408 PF13041.6 PPR_2 Repeat 1 46 50 37.1 2.7e-09 1 CL0020
Cotton_A_07872_CDS 463 510 462 511 PF13041.6 PPR_2 Repeat 2 49 50 39.0 6.9e-10 1 CL0020
Cotton_A_07872_CDS 537 559 536 562 PF01535.20 PPR Family 2 24 31 10.0 0.83 1 CL0020
Cotton_A_21343_CDS 19 106 1 108 PF03004.14 Transposase_24 Family 50 139 142 41.9 9.8e-11 1 No_clan
Cotton_A_28039_CDS 48 317 48 319 PF00069.25 Pkinase Domain 1 260 264 160.8 3.9e-47 1 CL0016
Cotton_A_04221_CDS 18 233 18 233 PF07795.11 DUF1635 Family 1 224 224 301.2 5.4e-90 1 No_clan
Cotton_A_29875_CDS 92 162 92 163 PF07983.13 X8 Domain 1 75 76 73.4 1.8e-20 1 No_clan
Cotton_A_28725_CDS 25 342 25 348 PF00657.22 Lipase_GDSL Family 1 194 200 84.8 7.5e-24 1 CL0264
Cotton_A_13206_CDS 20 202 20 202 PF14215.6 bHLH-MYC_N Family 1 175 175 169.2 9.9e-50 1 CL0161
Cotton_A_13206_CDS 300 345 298 346 PF00010.26 HLH Domain 4 52 53 45.0 7.8e-12 1 No_clan
Cotton_A_24645_CDS 48 207 48 208 PF01554.18 MatE Family 1 160 161 97.6 5.9e-28 1 CL0222
Cotton_A_24645_CDS 270 433 268 434 PF01554.18 MatE Family 3 160 161 83.9 9.1e-24 1 CL0222
Cotton_A_21976_CDS 549 810 544 814 PF07899.11 Frigida Family 14 283 289 213.9 2.8e-63 1 No_clan
Cotton_A_27948_CDS 147 211 146 211 PF12352.8 V-SNARE_C Domain 2 66 66 56.3 2.9e-15 1 CL0147
Cotton_A_18073_CDS 32 200 29 200 PF10394.9 Hat1_N Domain 4 160 160 88.0 7.8e-25 1 CL0361
Cotton_A_18073_CDS 232 292 204 298 PF00583.25 Acetyltransf_1 Family 44 105 117 26.1 8.1e-06 1 CL0257
Cotton_A_13329_CDS 37 126 15 126 PF14368.6 LTP_2 Family 13 97 97 54.3 1.1e-14 1 CL0482
Cotton_A_28116_CDS 30 76 24 76 PF13857.6 Ank_5 Repeat 11 55 56 36.8 3.3e-09 1 CL0465
Cotton_A_15618_CDS 47 278 12 292 PF04997.12 RNA_pol_Rpb1_1 Domain 47 277 312 49.7 3.1e-13 1 No_clan
Cotton_A_15618_CDS 321 475 318 475 PF00623.20 RNA_pol_Rpb1_2 Domain 5 166 166 119.9 1.3e-34 1 No_clan
Cotton_A_15618_CDS 478 623 478 624 PF04983.18 RNA_pol_Rpb1_3 Domain 1 156 157 36.5 4.2e-09 1 No_clan
Cotton_A_15618_CDS 752 1171 752 1175 PF04998.17 RNA_pol_Rpb1_5 Domain 1 263 267 39.3 5e-10 1 No_clan
Cotton_A_15618_CDS 1825 1900 1824 1900 PF11523.8 DUF3223 Family 2 75 75 79.9 1.9e-22 1 No_clan
Cotton_A_27575_CDS 17 339 16 339 PF16913.5 PUNUT Family 2 322 322 399.7 9.4e-120 1 CL0184
Cotton_A_15910_CDS 30 205 29 219 PF01145.25 Band_7 Family 2 177 178 85.9 3.2e-24 1 CL0433
Cotton_A_07156_CDS 22 85 20 86 PF00690.26 Cation_ATPase_N Domain 3 68 69 52.6 2.7e-14 1 No_clan
Cotton_A_07156_CDS 134 312 132 313 PF00122.20 E1-E2_ATPase Family 3 180 181 163.8 2.8e-48 1 No_clan
Cotton_A_07156_CDS 329 606 329 606 PF00702.26 Hydrolase Domain 1 210 210 70.7 2.1e-19 1 CL0137
Cotton_A_28187_CDS 96 121 95 142 PF01693.16 Cauli_VI Family 2 25 44 20.9 0.00032 1 No_clan
Cotton_A_29165_CDS 18 65 16 67 PF02892.15 zf-BED Domain 3 42 44 34.1 2e-08 1 CL0361
Cotton_A_29165_CDS 421 519 420 519 PF14372.6 DUF4413 Family 2 100 100 97.3 5.4e-28 1 No_clan
Cotton_A_29165_CDS 570 652 570 652 PF05699.14 Dimer_Tnp_hAT Domain 1 86 86 102.2 9.8e-30 1 No_clan
Cotton_A_38271_CDS 308 672 307 673 PF05277.12 DUF726 Family 2 342 343 297.0 1.5e-88 1 CL0028
Cotton_A_02756_CDS 80 334 79 336 PF00685.27 Sulfotransfer_1 Domain 2 265 267 213.8 3.1e-63 1 CL0023
Cotton_A_02945_CDS 242 281 240 285 PF13920.6 zf-C3HC4_3 Domain 3 45 50 33.8 2.3e-08 1 CL0229
Cotton_A_19615_CDS 35 162 34 163 PF08240.12 ADH_N Domain 2 108 109 83.2 1.1e-23 1 CL0296
Cotton_A_19615_CDS 205 335 205 340 PF00107.26 ADH_zinc_N Family 1 125 130 91.0 5.6e-26 1 CL0063
Cotton_A_27588_CDS 81 178 81 179 PF03091.15 CutA1 Domain 1 98 99 125.2 7.3e-37 1 CL0089
Cotton_A_02159_CDS 13 100 11 114 PF01277.17 Oleosin Family 3 90 113 49.8 2.4e-13 1 No_clan
Cotton_A_00286_CDS 39 296 39 296 PF13561.6 adh_short_C2 Domain 1 234 234 198.1 1.5e-58 1 CL0063
Cotton_A_36238_CDS 15 131 15 131 PF02136.20 NTF2 Domain 1 120 120 102.9 1.6e-29 1 CL0051
Cotton_A_36238_CDS 296 352 296 358 PF00076.22 RRM_1 Domain 1 56 70 47.7 9.9e-13 1 CL0221
Cotton_A_07644_CDS 51 158 49 161 PF01426.18 BAH Domain 3 116 122 28.0 1.6e-06 1 No_clan
Cotton_A_07644_CDS 355 404 354 404 PF08711.11 Med26 Domain 2 53 53 44.9 8.5e-12 1 No_clan
Cotton_A_03342_CDS 191 215 191 217 PF01535.20 PPR Family 3 27 31 17.9 0.0027 1 CL0020
Cotton_A_03342_CDS 221 269 220 269 PF13041.6 PPR_2 Repeat 2 50 50 39.8 3.8e-10 1 CL0020
Cotton_A_03342_CDS 295 322 293 323 PF01535.20 PPR Family 3 30 31 11.9 0.21 1 CL0020
Cotton_A_03342_CDS 326 373 325 374 PF13041.6 PPR_2 Repeat 2 49 50 42.9 4.2e-11 1 CL0020
Cotton_A_03342_CDS 439 462 436 463 PF01535.20 PPR Family 7 30 31 10.1 0.82 1 CL0020
Cotton_A_10825_CDS 47 98 47 104 PF00076.22 RRM_1 Domain 1 58 70 33.0 3.9e-08 1 CL0221
Cotton_A_12275_CDS 59 521 59 521 PF00759.19 Glyco_hydro_9 Domain 1 411 411 487.6 4.1e-146 1 CL0059
Cotton_A_39751_CDS 28 172 4 172 PF04520.13 Senescence_reg Family 33 168 168 148.1 4.1e-43 1 No_clan
Cotton_A_17134_CDS 3 97 3 97 PF14368.6 LTP_2 Family 1 97 97 49.0 5e-13 1 CL0482
Cotton_A_16211_CDS 92 113 91 115 PF13202.6 EF-hand_5 Domain 2 23 25 18.6 0.00095 1 CL0220
Cotton_A_16211_CDS 121 179 119 183 PF13499.6 EF-hand_7 Domain 3 67 71 33.3 4.8e-08 1 CL0220
Cotton_A_16211_CDS 223 305 218 308 PF00153.27 Mito_carr Family 6 94 97 81.6 2.8e-23 1 No_clan
Cotton_A_16211_CDS 315 403 313 406 PF00153.27 Mito_carr Family 3 93 97 81.8 2.6e-23 1 No_clan
Cotton_A_16211_CDS 414 502 411 505 PF00153.27 Mito_carr Family 4 93 97 85.0 2.6e-24 1 No_clan
Cotton_A_08689_CDS 4 323 4 323 PF01112.18 Asparaginase_2 Domain 1 306 306 374.1 4.4e-112 1 CL0052
Cotton_A_29632_CDS 21 83 18 85 PF13499.6 EF-hand_7 Domain 4 68 71 42.6 6.1e-11 1 CL0220
Cotton_A_29632_CDS 98 120 98 123 PF13202.6 EF-hand_5 Domain 1 23 25 27.2 1.7e-06 1 CL0220
Cotton_A_36298_CDS 78 192 64 192 PF00134.23 Cyclin_N Domain 18 127 127 89.0 2e-25 1 CL0065
Cotton_A_36298_CDS 194 303 194 318 PF02984.19 Cyclin_C Domain 1 106 119 67.3 1.2e-18 1 CL0065
Cotton_A_23342_CDS 33 107 22 107 PF13456.6 RVT_3 Domain 36 112 124 29.8 4.2e-07 1 CL0219
Cotton_A_09192_CDS 48 239 47 242 PF00149.28 Metallophos Domain 2 201 204 123.3 1.8e-35 1 CL0163
Cotton_A_23168_CDS 71 148 71 149 PF10252.9 PP28 Domain 1 84 85 95.2 2.4e-27 1 No_clan
Cotton_A_05578_CDS 13 104 12 113 PF03226.14 Yippee-Mis18 Domain 2 89 105 61.1 9.5e-17 1 CL0080
Cotton_A_23242_CDS 282 389 281 390 PF03109.16 ABC1 Family 2 118 119 84.3 7.1e-24 1 CL0016
Cotton_A_31785_CDS 76 366 76 368 PF07887.11 Calmodulin_bind Family 1 290 292 407.9 2.3e-122 1 No_clan
Cotton_A_00343_CDS 3 256 1 256 PF03151.16 TPT Family 38 290 290 136.5 1.2e-39 1 CL0184
Cotton_A_38124_CDS 30 66 29 67 PF08263.12 LRRNT_2 Family 2 40 41 41.6 1.1e-10 1 No_clan
Cotton_A_38124_CDS 191 211 191 213 PF00560.33 LRR_1 Repeat 1 21 23 9.3 2 1 CL0022
Cotton_A_38124_CDS 263 285 263 285 PF00560.33 LRR_1 Repeat 1 23 23 11.9 0.28 1 CL0022
Cotton_A_38124_CDS 358 417 357 417 PF13855.6 LRR_8 Repeat 2 61 61 29.7 4e-07 1 CL0022
Cotton_A_38124_CDS 705 764 704 764 PF13855.6 LRR_8 Repeat 2 61 61 35.6 5.7e-09 1 CL0022
Cotton_A_38124_CDS 1001 1268 997 1269 PF07714.17 Pkinase_Tyr Domain 5 258 259 157.9 2.8e-46 1 CL0016
Cotton_A_36757_CDS 40 192 40 193 PF04043.15 PMEI Domain 1 153 154 123.4 1e-35 1 No_clan
Cotton_A_01671_CDS 27 112 22 115 PF02362.21 B3 Family 7 98 101 45.5 5.4e-12 1 CL0405
Cotton_A_03786_CDS 53 139 52 141 PF01230.23 HIT Domain 2 88 98 58.2 1e-15 1 CL0265
Cotton_A_34888_CDS 19 90 18 100 PF00300.22 His_Phos_1 Domain 2 62 194 29.2 6.6e-07 1 CL0071
Cotton_A_09430_CDS 4 94 3 95 PF03650.13 MPC Family 2 92 110 117.1 3.9e-34 1 CL0141
Cotton_A_33355_CDS 30 133 30 171 PF00314.17 Thaumatin Domain 1 112 214 96.9 1.3e-27 1 CL0293
Cotton_A_11375_CDS 38 148 38 155 PF14226.6 DIOX_N Family 1 117 118 80.0 2.2e-22 1 CL0029
Cotton_A_11375_CDS 195 293 193 294 PF03171.20 2OG-FeII_Oxy Domain 3 100 101 81.1 6.7e-23 1 CL0029
Cotton_A_16804_CDS 89 231 87 238 PF00106.25 adh_short Domain 3 141 195 72.5 3.1e-20 1 CL0063
Cotton_A_11155_CDS 168 486 168 487 PF00225.23 Kinesin Domain 1 332 333 312.8 2.2e-93 1 CL0023
Cotton_A_03759_CDS 100 126 99 127 PF01535.20 PPR Family 2 28 31 17.5 0.0034 1 CL0020
Cotton_A_03759_CDS 174 198 173 199 PF01535.20 PPR Family 6 30 31 17.9 0.0026 1 CL0020
Cotton_A_03759_CDS 228 275 228 277 PF13041.6 PPR_2 Repeat 1 48 50 51.0 1.2e-13 1 CL0020
Cotton_A_03759_CDS 331 378 330 379 PF13041.6 PPR_2 Repeat 2 49 50 42.9 4.2e-11 1 CL0020
Cotton_A_03759_CDS 471 500 470 500 PF01535.20 PPR Family 2 31 31 14.3 0.036 1 CL0020
Cotton_A_03759_CDS 504 628 504 628 PF14432.6 DYW_deaminase Family 1 127 127 123.8 3.6e-36 1 CL0109
Cotton_A_04670_CDS 129 446 129 446 PF14476.6 Chloroplast_duf Family 1 320 320 530.6 1.1e-159 1 No_clan
Cotton_A_20371_CDS 46 182 46 183 PF00179.26 UQ_con Domain 1 139 140 149.8 3.5e-44 1 CL0208
Cotton_A_11115_CDS 82 494 67 510 PF00067.22 p450 Domain 23 445 463 287.1 2.2e-85 1 No_clan
Cotton_A_34535_CDS 115 177 114 177 PF09446.10 VMA21 Domain 2 64 64 71.3 5.4e-20 1 No_clan
Cotton_A_21847_CDS 42 94 42 95 PF13833.6 EF-hand_8 Domain 1 54 55 64.9 4.4e-18 1 CL0220
Cotton_A_33024_CDS 47 357 45 357 PF03016.15 Exostosin Family 3 300 300 256.0 4.2e-76 1 No_clan
Cotton_A_10952_CDS 33 152 33 152 PF06487.12 SAP18 Family 1 140 140 138.3 1.9e-40 1 CL0072
Cotton_A_19795_CDS 12 317 10 318 PF00294.24 PfkB Family 3 301 302 261.3 1.1e-77 1 CL0118
Cotton_A_06050_CDS 447 473 446 477 PF05553.11 DUF761 Family 2 28 36 24.9 1.1e-05 1 No_clan
Cotton_A_00679_CDS 10 77 2 78 PF02519.14 Auxin_inducible Family 22 89 90 89.1 1.6e-25 1 No_clan
Cotton_A_17271_CDS 2 88 1 89 PF01554.18 MatE Family 75 160 161 32.4 6.5e-08 1 CL0222
Cotton_A_05440_CDS 88 412 87 414 PF01301.19 Glyco_hydro_35 Domain 2 314 316 380.8 6.6e-114 1 CL0058
Cotton_A_05440_CDS 619 686 602 690 PF13364.6 BetaGal_dom4_5 Domain 35 106 114 24.7 2.8e-05 1 CL0202
Cotton_A_28301_CDS 64 373 64 381 PF00295.17 Glyco_hydro_28 Domain 1 309 325 299.1 3.4e-89 1 CL0268
Cotton_A_19347_CDS 13 90 11 90 PF00181.23 Ribosomal_L2 Domain 3 77 77 65.0 4.5e-18 1 CL0021
Cotton_A_19347_CDS 98 230 97 234 PF03947.18 Ribosomal_L2_C Domain 2 121 126 156.8 2.8e-46 1 CL0107
Cotton_A_00341_CDS 72 216 72 216 PF02338.19 OTU Family 1 127 127 46.6 4.4e-12 1 CL0125
Cotton_A_22965_CDS 346 716 346 717 PF03514.14 GRAS Family 1 373 374 398.5 2.6e-119 1 CL0063
Cotton_A_03059_CDS 50 434 50 435 PF12819.7 Malectin_like Domain 1 335 336 158.7 2.1e-46 1 CL0202
Cotton_A_03059_CDS 432 534 415 537 PF07714.17 Pkinase_Tyr Domain 169 256 259 31.3 1.2e-07 1 CL0016
Cotton_A_07259_CDS 6 55 5 56 PF00847.20 AP2 Domain 2 53 54 43.3 3.1e-11 1 CL0081
Cotton_A_16861_CDS 116 155 116 155 PF00400.32 WD40 Repeat 1 38 38 24.6 3.3e-05 1 CL0186
Cotton_A_16861_CDS 215 246 208 246 PF00400.32 WD40 Repeat 8 38 38 20.3 0.00072 1 CL0186
Cotton_A_16861_CDS 252 288 250 288 PF00400.32 WD40 Repeat 3 38 38 16.2 0.015 1 CL0186
Cotton_A_16861_CDS 614 763 602 764 PF11816.8 DUF3337 Family 38 171 172 91.2 6.6e-26 1 No_clan
Cotton_A_28747_CDS 27 59 25 59 PF06376.12 AGP Family 1 36 36 61.5 4.8e-17 1 No_clan
Cotton_A_22237_CDS 5 162 5 163 PF05907.13 DUF866 Family 1 154 155 164.3 1.9e-48 1 No_clan
Cotton_A_02943_CDS 34 111 32 112 PF13774.6 Longin Domain 3 83 84 87.6 4.3e-25 1 No_clan
Cotton_A_02943_CDS 129 215 127 215 PF00957.21 Synaptobrevin Family 3 89 89 113.5 3e-33 1 CL0445
Cotton_A_27173_CDS 4 101 3 101 PF00438.20 S-AdoMet_synt_N Domain 2 99 99 145.1 8.4e-43 1 No_clan
Cotton_A_27173_CDS 117 238 117 238 PF02772.16 S-AdoMet_synt_M Domain 1 120 120 161.2 1.1e-47 1 No_clan
Cotton_A_27173_CDS 240 381 240 382 PF02773.16 S-AdoMet_synt_C Domain 1 137 138 207.6 6.6e-62 1 No_clan
Cotton_A_37079_CDS 56 382 56 382 PF03405.14 FA_desaturase_2 Domain 1 326 326 501.6 7.5e-151 1 CL0044
Cotton_A_34762_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 54.5 9.6e-15 1 CL0123
Cotton_A_34762_CDS 67 112 67 112 PF00249.31 Myb_DNA-binding Domain 1 46 46 56.9 1.8e-15 1 CL0123
Cotton_A_17176_CDS 26 254 24 269 PF01490.18 Aa_trans Family 3 217 409 184.3 3e-54 1 CL0062
Cotton_A_17176_CDS 269 475 262 477 PF01490.18 Aa_trans Family 212 407 409 155.4 1.8e-45 1 CL0062
Cotton_A_04976_CDS 66 364 58 365 PF05212.12 DUF707 Family 8 295 296 443.8 2.7e-133 1 No_clan
Cotton_A_07857_CDS 16 425 16 425 PF06090.12 Ins_P5_2-kin Family 1 332 332 325.0 6.4e-97 1 CL0016
Cotton_A_08498_CDS 28 231 27 231 PF13532.6 2OG-FeII_Oxy_2 Domain 2 196 196 107.5 9.7e-31 1 CL0029
Cotton_A_15524_CDS 102 162 102 162 PF13855.6 LRR_8 Repeat 1 61 61 39.6 3.3e-10 1 CL0022
Cotton_A_15524_CDS 304 552 303 554 PF00069.25 Pkinase Domain 9 260 264 76.3 2.3e-21 1 CL0016
Cotton_A_23948_CDS 54 207 53 212 PF01789.16 PsbP Domain 2 150 156 109.7 1.5e-31 1 CL0619
Cotton_A_27671_CDS 315 482 315 482 PF07534.16 TLD Domain 1 139 139 85.0 5.2e-24 1 No_clan
Cotton_A_32305_CDS 14 175 14 177 PF00071.22 Ras Domain 1 160 162 50.3 1.9e-13 1 CL0023
Cotton_A_32305_CDS 229 314 228 315 PF08356.12 EF_assoc_2 Family 2 86 87 106.2 6.5e-31 1 CL0220
Cotton_A_32305_CDS 351 419 351 419 PF08355.12 EF_assoc_1 Family 1 75 75 72.3 1.8e-20 1 No_clan
Cotton_A_32305_CDS 428 565 426 591 PF00071.22 Ras Domain 3 136 162 25.5 8.3e-06 1 CL0023
Cotton_A_30702_CDS 204 246 203 246 PF13639.6 zf-RING_2 Domain 2 44 44 41.4 1.3e-10 1 CL0229
Cotton_A_08818_CDS 1 158 1 158 PF08491.10 SE Family 117 276 276 173.2 5.5e-51 1 CL0063
Cotton_A_24488_CDS 5 52 4 52 PF13639.6 zf-RING_2 Domain 2 44 44 31.2 2.1e-07 1 CL0229
Cotton_A_24488_CDS 187 445 175 448 PF00069.25 Pkinase Domain 23 259 264 99.7 1.8e-28 1 CL0016
Cotton_A_24488_CDS 522 595 494 596 PF12796.7 Ank_2 Repeat 13 81 83 42.0 1.1e-10 1 CL0465
Cotton_A_24488_CDS 604 651 602 655 PF13637.6 Ank_4 Repeat 3 51 55 31.9 1.4e-07 1 CL0465
Cotton_A_24488_CDS 727 810 709 811 PF12796.7 Ank_2 Repeat 10 82 83 53.8 2.2e-14 1 CL0465
Cotton_A_01313_CDS 9 141 8 145 PF10358.9 NT-C2 Family 2 141 146 65.1 5.6e-18 1 CL0154
Cotton_A_25576_CDS 25 89 25 101 PF02265.16 S1-P1_nuclease Domain 1 68 253 67.6 1.5e-18 1 CL0368
Cotton_A_20721_CDS 16 50 16 51 PF00320.27 GATA Domain 1 35 36 60.7 7.2e-17 1 CL0167
Cotton_A_22221_CDS 10 85 1 85 PF00043.25 GST_C Domain 18 93 93 50.9 1.4e-13 1 CL0497
Cotton_A_19609_CDS 7 95 6 95 PF03083.16 MtN3_slv Family 2 87 87 69.2 2.3e-19 1 CL0141
Cotton_A_37932_CDS 117 199 115 200 PF00111.27 Fer2 Domain 3 77 78 25.8 7.5e-06 1 CL0486
Cotton_A_41019_CDS 10 32 10 32 PF02493.20 MORN Repeat 1 23 23 26.2 4.7e-06 1 CL0251
Cotton_A_41019_CDS 33 54 33 55 PF02493.20 MORN Repeat 1 22 23 23.1 4.6e-05 1 CL0251
Cotton_A_41019_CDS 56 78 56 78 PF02493.20 MORN Repeat 1 23 23 23.1 4.6e-05 1 CL0251
Cotton_A_41019_CDS 79 100 79 101 PF02493.20 MORN Repeat 1 22 23 23.1 4.6e-05 1 CL0251
Cotton_A_41019_CDS 102 121 102 124 PF02493.20 MORN Repeat 1 20 23 24.7 1.4e-05 1 CL0251
Cotton_A_41019_CDS 125 145 125 147 PF02493.20 MORN Repeat 1 21 23 25.6 7.4e-06 1 CL0251
Cotton_A_41019_CDS 148 169 148 170 PF02493.20 MORN Repeat 1 22 23 27.9 1.4e-06 1 CL0251
Cotton_A_41019_CDS 412 716 409 717 PF01504.18 PIP5K Family 4 273 274 292.9 2e-87 1 CL0016
Cotton_A_29924_CDS 33 76 32 76 PF13639.6 zf-RING_2 Domain 2 44 44 52.6 4.2e-14 1 CL0229
Cotton_A_05954_CDS 63 100 60 101 PF08263.12 LRRNT_2 Family 4 40 41 33.7 3.3e-08 1 No_clan
Cotton_A_05954_CDS 279 549 278 551 PF00069.25 Pkinase Domain 2 260 264 149.3 1.3e-43 1 CL0016
Cotton_A_00887_CDS 300 331 293 331 PF00400.32 WD40 Repeat 10 38 38 19.5 0.0013 1 CL0186
Cotton_A_00887_CDS 348 373 335 373 PF00400.32 WD40 Repeat 13 38 38 16.1 0.015 1 CL0186
Cotton_A_32003_CDS 169 200 168 201 PF13181.6 TPR_8 Repeat 2 33 34 18.4 0.0017 1 CL0020
Cotton_A_00297_CDS 56 159 54 159 PF04398.12 DUF538 Family 3 112 112 91.5 4.3e-26 1 No_clan
Cotton_A_10280_CDS 114 288 110 290 PF07991.12 IlvN Family 5 161 165 103.4 9.3e-30 1 CL0063
Cotton_A_10280_CDS 297 441 296 442 PF01450.19 IlvC Family 2 143 144 120.9 4.9e-35 1 CL0106
Cotton_A_10280_CDS 454 523 451 540 PF01450.19 IlvC Family 18 86 144 31.4 2e-07 1 CL0106
Cotton_A_14745_CDS 169 225 169 226 PF03106.15 WRKY Domain 1 58 59 89.3 1.4e-25 1 CL0274
Cotton_A_09765_CDS 73 200 49 200 PF00134.23 Cyclin_N Domain 24 127 127 62.9 2.3e-17 1 CL0065
Cotton_A_09765_CDS 203 260 202 277 PF02984.19 Cyclin_C Domain 2 58 119 21.5 0.00019 1 CL0065
Cotton_A_14839_CDS 7 254 7 256 PF03029.17 ATP_bind_1 Domain 1 239 241 226.5 4.1e-67 1 CL0023
Cotton_A_24043_CDS 12 70 3 70 PF03946.14 Ribosomal_L11_N Domain 7 65 65 75.6 2e-21 1 No_clan
Cotton_A_24043_CDS 75 144 74 144 PF00298.19 Ribosomal_L11 Domain 2 70 70 68.1 7e-19 1 No_clan
Cotton_A_11970_CDS 5 284 1 300 PF00067.22 p450 Domain 172 449 463 138.4 2.9e-40 1 No_clan
Cotton_A_28313_CDS 92 192 91 192 PF13409.6 GST_N_2 Domain 2 69 70 60.5 1.4e-16 1 CL0172
Cotton_A_28313_CDS 239 310 235 311 PF13410.6 GST_C_2 Domain 2 68 69 49.8 2.7e-13 1 CL0497
Cotton_A_30146_CDS 2 113 1 114 PF00888.22 Cullin Family 206 315 618 77.4 9.4e-22 1 No_clan
Cotton_A_14286_CDS 355 403 352 406 PF00571.28 CBS Domain 8 53 57 20.2 0.00062 1 No_clan
Cotton_A_16721_CDS 34 214 33 214 PF00722.21 Glyco_hydro_16 Domain 2 177 177 184.4 1.3e-54 1 CL0004
Cotton_A_16721_CDS 242 290 241 290 PF06955.12 XET_C Family 2 47 47 59.4 2.2e-16 1 CL0004
Cotton_A_25133_CDS 9 32 7 35 PF00320.27 GATA Domain 9 32 36 35.8 4.3e-09 1 CL0167
Cotton_A_34203_CDS 9 126 4 126 PF00931.22 NB-ARC Domain 16 140 252 37.4 1.5e-09 1 CL0023
Cotton_A_02803_CDS 107 354 107 354 PF00069.25 Pkinase Domain 1 264 264 232.6 5.1e-69 1 CL0016
Cotton_A_13005_CDS 101 177 99 178 PF15044.6 CLU_N Family 3 78 79 54.7 9.5e-15 1 No_clan
Cotton_A_13005_CDS 263 331 256 335 PF05303.12 DUF727 Family 30 100 105 27.7 2.2e-06 1 No_clan
Cotton_A_13005_CDS 384 662 384 662 PF13236.6 CLU Domain 1 221 221 286.7 1.4e-85 1 No_clan
Cotton_A_13005_CDS 812 996 811 996 PF12807.7 eIF3_p135 Family 2 176 176 172.3 9.8e-51 1 No_clan
Cotton_A_13005_CDS 1107 1178 1107 1179 PF13424.6 TPR_12 Repeat 2 73 77 47.1 2.1e-12 1 CL0020
Cotton_A_01118_CDS 53 164 51 165 PF01398.21 JAB Family 3 117 118 117.7 2.6e-34 1 CL0366
Cotton_A_01118_CDS 252 329 252 329 PF18323.1 CSN5_C Domain 1 89 89 88.2 5e-25 1 No_clan
Cotton_A_19611_CDS 130 273 127 273 PF01789.16 PsbP Domain 13 156 156 38.9 8.8e-10 1 CL0619
Cotton_A_26293_CDS 59 150 54 154 PF00635.26 Motile_Sperm Domain 15 106 109 90.8 4.6e-26 1 CL0556
Cotton_A_08668_CDS 192 467 189 467 PF07714.17 Pkinase_Tyr Domain 4 259 259 152.9 9.2e-45 1 CL0016
Cotton_A_10164_CDS 49 76 49 76 PF01535.20 PPR Family 4 31 31 13.8 0.053 1 CL0020
Cotton_A_10164_CDS 77 107 77 107 PF01535.20 PPR Family 1 31 31 18.8 0.0014 1 CL0020
Cotton_A_10164_CDS 136 163 135 165 PF12854.7 PPR_1 Repeat 5 32 34 27.3 2.2e-06 1 CL0020
Cotton_A_10164_CDS 168 214 167 216 PF13041.6 PPR_2 Repeat 2 48 50 34.5 1.8e-08 1 CL0020
Cotton_A_10164_CDS 270 316 269 318 PF13041.6 PPR_2 Repeat 2 48 50 38.0 1.3e-09 1 CL0020
Cotton_A_22889_CDS 1 71 1 71 PF03760.15 LEA_1 Family 1 71 71 77.6 8.7e-22 1 No_clan
Cotton_A_06929_CDS 8 73 8 173 PF01734.22 Patatin Family 1 56 204 40.4 3.6e-10 1 CL0323
Cotton_A_20692_CDS 16 86 16 87 PF00076.22 RRM_1 Domain 1 69 70 40.5 1.8e-10 1 CL0221
Cotton_A_20692_CDS 172 235 172 237 PF00076.22 RRM_1 Domain 1 68 70 53.9 1.1e-14 1 CL0221
Cotton_A_09112_CDS 290 646 289 647 PF03081.15 Exo70 Family 2 375 376 279.6 3.8e-83 1 CL0295
Cotton_A_29814_CDS 85 208 85 210 PF00828.19 Ribosomal_L27A Family 1 126 128 108.3 4.3e-31 1 CL0588
Cotton_A_02027_CDS 122 168 122 168 PF01476.20 LysM Domain 1 44 44 12.1 0.16 1 CL0187
Cotton_A_02027_CDS 377 616 363 618 PF00069.25 Pkinase Domain 28 260 264 133.8 6.8e-39 1 CL0016
Cotton_A_15172_CDS 48 304 48 304 PF00795.22 CN_hydrolase Family 1 261 261 214.4 1.7e-63 1 No_clan
Cotton_A_14114_CDS 137 158 136 165 PF13606.6 Ank_3 Repeat 2 23 31 23.3 5.4e-05 1 CL0465
Cotton_A_14114_CDS 191 214 189 217 PF13606.6 Ank_3 Repeat 3 28 31 18.9 0.0014 1 CL0465
Cotton_A_14114_CDS 243 316 239 322 PF12796.7 Ank_2 Repeat 14 75 83 45.2 1.1e-11 1 CL0465
Cotton_A_14114_CDS 457 575 456 575 PF13962.6 PGG Domain 2 116 116 94.8 2.8e-27 1 No_clan
Cotton_A_25931_CDS 14 70 13 70 PF00403.26 HMA Domain 2 62 62 44.2 1.9e-11 1 No_clan
Cotton_A_22709_CDS 58 436 54 444 PF00999.21 Na_H_Exchanger Family 6 370 381 88.6 3.5e-25 1 CL0064
Cotton_A_05769_CDS 19 82 16 82 PF03108.15 DBD_Tnp_Mut Family 4 67 67 79.0 2e-22 1 CL0274
Cotton_A_05769_CDS 221 311 213 311 PF10551.9 MULE Domain 9 96 96 48.2 1.1e-12 1 CL0219
Cotton_A_05769_CDS 460 493 443 494 PF04434.17 SWIM Domain 9 39 40 35.0 7.7e-09 1 No_clan
Cotton_A_22137_CDS 50 65 48 65 PF11416.8 Syntaxin-5_N Family 7 22 23 15.9 0.0055 1 No_clan
Cotton_A_22137_CDS 330 381 329 381 PF05739.19 SNARE Family 2 53 53 44.8 9e-12 1 No_clan
Cotton_A_18784_CDS 52 159 52 160 PF14226.6 DIOX_N Family 1 117 118 104.1 7.3e-30 1 CL0029
Cotton_A_18784_CDS 206 305 204 305 PF03171.20 2OG-FeII_Oxy Domain 3 101 101 85.1 3.7e-24 1 CL0029
Cotton_A_13136_CDS 99 527 99 534 PF00854.21 PTR2 Family 1 389 395 328.0 7.3e-98 1 CL0015
Cotton_A_21935_CDS 59 157 58 170 PF14226.6 DIOX_N Family 2 102 118 84.0 1.3e-23 1 CL0029
Cotton_A_21935_CDS 214 308 212 311 PF03171.20 2OG-FeII_Oxy Domain 4 98 101 84.2 7.1e-24 1 CL0029
Cotton_A_05953_CDS 55 178 55 178 PF14365.6 Neprosin_AP Family 1 118 118 153.9 2.3e-45 1 No_clan
Cotton_A_05953_CDS 191 413 191 413 PF03080.15 Neprosin Family 1 222 222 297.5 4.8e-89 1 No_clan
Cotton_A_37876_CDS 80 359 79 359 PF00682.19 HMGL-like Domain 2 264 264 313.4 1.3e-93 1 CL0036
Cotton_A_37876_CDS 487 631 486 631 PF08502.10 LeuA_dimer Domain 2 133 133 133.1 5.7e-39 1 No_clan
Cotton_A_39154_CDS 31 95 29 96 PF00690.26 Cation_ATPase_N Domain 4 68 69 48.1 7.1e-13 1 No_clan
Cotton_A_39154_CDS 145 322 143 323 PF00122.20 E1-E2_ATPase Family 4 180 181 168.0 1.4e-49 1 No_clan
Cotton_A_39154_CDS 339 616 339 616 PF00702.26 Hydrolase Domain 1 210 210 62.1 8.5e-17 1 CL0137
Cotton_A_09267_CDS 3 65 1 68 PF00931.22 NB-ARC Domain 131 193 252 31.3 1.1e-07 1 CL0023
Cotton_A_41286_CDS 85 144 83 147 PF00013.29 KH_1 Domain 3 63 66 30.5 2.4e-07 1 CL0007
Cotton_A_41286_CDS 162 229 161 231 PF00013.29 KH_1 Domain 2 64 66 47.8 9.4e-13 1 CL0007
Cotton_A_25508_CDS 147 211 147 211 PF01066.21 CDP-OH_P_transf Family 1 66 66 49.4 5.9e-13 1 No_clan
Cotton_A_16040_CDS 88 161 84 166 PF12796.7 Ank_2 Repeat 12 73 83 37.5 2.7e-09 1 CL0465
Cotton_A_32072_CDS 262 329 260 330 PF04542.14 Sigma70_r2 Domain 3 70 71 57.3 9.5e-16 1 CL0123
Cotton_A_32072_CDS 339 410 339 414 PF04539.16 Sigma70_r3 Family 1 74 78 46.0 4e-12 1 CL0123
Cotton_A_32072_CDS 436 484 436 485 PF04545.16 Sigma70_r4 Domain 4 49 50 41.6 6.4e-11 1 CL0123
Cotton_A_12534_CDS 117 163 117 164 PF04839.13 PSRP-3_Ycf65 Family 1 47 48 91.6 2.5e-26 1 No_clan
Cotton_A_30037_CDS 600 646 599 647 PF00628.29 PHD Domain 2 51 52 36.9 2.4e-09 1 CL0390
Cotton_A_33783_CDS 470 506 468 506 PF00400.32 WD40 Repeat 3 38 38 24.8 2.8e-05 1 CL0186
Cotton_A_37408_CDS 10 90 9 121 PF14226.6 DIOX_N Family 2 79 118 43.7 4e-11 1 CL0029
Cotton_A_37408_CDS 172 261 157 263 PF03171.20 2OG-FeII_Oxy Domain 8 99 101 53.8 2.1e-14 1 CL0029
Cotton_A_12693_CDS 152 225 152 226 PF03110.14 SBP Domain 1 74 75 103.4 6.1e-30 1 No_clan
Cotton_A_05030_CDS 1 172 1 176 PF14580.6 LRR_9 Repeat 1 172 175 265.9 1.1e-79 1 CL0022
Cotton_A_11234_CDS 14 46 13 47 PF02037.27 SAP Family 2 34 35 33.9 1.8e-08 1 CL0306
Cotton_A_11234_CDS 679 718 667 722 PF16294.5 RSB_motif Motif 57 96 102 48.3 9.7e-13 1 No_clan
Cotton_A_33480_CDS 135 309 135 311 PF01764.25 Lipase_3 Family 1 140 142 119.3 1.1e-34 1 CL0028
Cotton_A_00600_CDS 78 142 78 146 PF00182.19 Glyco_hydro_19 Domain 1 65 232 95.9 3.2e-27 1 CL0037
Cotton_A_00600_CDS 148 249 142 249 PF00182.19 Glyco_hydro_19 Domain 130 232 232 156.1 1.3e-45 1 CL0037
Cotton_A_16783_CDS 55 128 55 129 PF03110.14 SBP Domain 1 74 75 113.9 3.1e-33 1 No_clan
Cotton_A_21269_CDS 160 398 158 399 PF00931.22 NB-ARC Domain 2 251 252 153.1 7.7e-45 1 CL0023
Cotton_A_30522_CDS 25 77 25 77 PF04431.13 Pec_lyase_N Family 1 56 56 60.3 1.6e-16 1 No_clan
Cotton_A_30522_CDS 172 353 167 354 PF00544.19 Pec_lyase_C Domain 31 210 211 71.1 9.6e-20 1 CL0268
Cotton_A_11181_CDS 17 83 2 90 PF00118.24 Cpn60_TCP1 Family 334 400 491 49.3 2.8e-13 1 No_clan
Cotton_A_11181_CDS 122 182 121 182 PF01200.18 Ribosomal_S28e Family 2 64 64 106.4 5.4e-31 1 CL0021
Cotton_A_06387_CDS 12 125 2 133 PF06075.12 DUF936 Family 487 617 692 79.4 2.9e-22 1 No_clan
Cotton_A_20974_CDS 186 427 185 427 PF04788.12 DUF620 Family 2 243 243 398.6 8.9e-120 1 No_clan
Cotton_A_10464_CDS 1 103 1 103 PF00891.18 Methyltransf_2 Domain 43 150 210 111.0 4.7e-32 1 CL0063
Cotton_A_01767_CDS 229 353 229 354 PF00134.23 Cyclin_N Domain 1 126 127 149.0 5.3e-44 1 CL0065
Cotton_A_01767_CDS 356 473 356 475 PF02984.19 Cyclin_C Domain 1 117 119 123.1 6.2e-36 1 CL0065
Cotton_A_35453_CDS 212 263 212 263 PF00249.31 Myb_DNA-binding Domain 1 46 46 28.2 1.5e-06 1 CL0123
Cotton_A_00050_CDS 6 232 5 241 PF16746.5 BAR_3 Domain 7 230 238 134.1 6.3e-39 1 CL0145
Cotton_A_00050_CDS 291 424 290 425 PF00169.29 PH Domain 2 104 105 45.3 9.6e-12 1 CL0266
Cotton_A_00050_CDS 504 640 501 642 PF01412.18 ArfGap Domain 4 115 117 114.1 3.7e-33 1 No_clan
Cotton_A_00050_CDS 744 828 744 832 PF12796.7 Ank_2 Repeat 1 73 83 40.4 3.3e-10 1 CL0465
Cotton_A_32356_CDS 23 277 23 277 PF00069.25 Pkinase Domain 1 264 264 242.8 3.8e-72 1 CL0016
Cotton_A_32356_CDS 303 362 302 362 PF03822.14 NAF Domain 2 54 54 64.9 5.5e-18 1 CL0573
Cotton_A_30528_CDS 2 67 1 68 PF07714.17 Pkinase_Tyr Domain 51 116 259 33.7 2.3e-08 1 CL0016
Cotton_A_24112_CDS 2 131 1 137 PF00106.25 adh_short Domain 27 138 195 55.6 4.7e-15 1 CL0063
Cotton_A_15676_CDS 199 381 199 383 PF00005.27 ABC_tran Domain 1 135 137 58.7 8.8e-16 1 CL0023
Cotton_A_15676_CDS 535 746 534 746 PF01061.24 ABC2_membrane Family 2 210 210 122.3 1.7e-35 1 CL0181
Cotton_A_15676_CDS 751 813 751 813 PF08370.11 PDR_assoc Family 1 65 65 80.5 5.6e-23 1 No_clan
Cotton_A_15676_CDS 886 1038 886 1038 PF00005.27 ABC_tran Domain 1 137 137 63.9 2.2e-17 1 CL0023
Cotton_A_15676_CDS 1183 1373 1183 1373 PF01061.24 ABC2_membrane Family 1 210 210 131.1 3.5e-38 1 CL0181
Cotton_A_06573_CDS 92 139 83 139 PF13855.6 LRR_8 Repeat 14 61 61 29.8 3.6e-07 1 CL0022
Cotton_A_06573_CDS 295 539 292 540 PF00069.25 Pkinase Domain 14 261 264 80.8 1e-22 1 CL0016
Cotton_A_12986_CDS 194 286 183 286 PF01554.18 MatE Family 71 161 161 50.4 1.9e-13 1 CL0222
Cotton_A_12986_CDS 340 478 331 484 PF01554.18 MatE Family 17 155 161 46.0 4.4e-12 1 CL0222
Cotton_A_06767_CDS 23 202 22 203 PF00722.21 Glyco_hydro_16 Domain 2 176 177 205.4 4.6e-61 1 CL0004
Cotton_A_06767_CDS 233 277 231 277 PF06955.12 XET_C Family 2 47 47 75.3 2.3e-21 1 CL0004
Cotton_A_03580_CDS 5 226 5 226 PF05648.14 PEX11 Family 1 223 223 187.5 2.3e-55 1 No_clan
Cotton_A_03698_CDS 401 523 393 542 PF00637.20 Clathrin Family 9 126 143 52.8 3.8e-14 1 CL0020
Cotton_A_03698_CDS 849 884 849 885 PF17122.5 zf-C3H2C3 Domain 1 34 35 28.2 1.5e-06 1 CL0229
Cotton_A_03698_CDS 889 931 888 932 PF12451.8 VPS11_C Family 2 44 45 58.0 7.9e-16 1 No_clan
Cotton_A_13189_CDS 35 87 35 87 PF08100.11 Dimerisation Domain 1 51 51 76.8 9.5e-22 1 CL0123
Cotton_A_13189_CDS 137 263 137 269 PF00891.18 Methyltransf_2 Domain 1 135 210 125.4 1.9e-36 1 CL0063
Cotton_A_13189_CDS 279 359 274 360 PF00891.18 Methyltransf_2 Domain 133 209 210 56.4 2.5e-15 1 CL0063
Cotton_A_16759_CDS 9 120 8 124 PF01124.18 MAPEG Family 2 119 130 71.7 5e-20 1 No_clan
Cotton_A_30903_CDS 174 205 168 205 PF00400.32 WD40 Repeat 7 38 38 13.3 0.12 1 CL0186
Cotton_A_30903_CDS 262 296 258 296 PF00400.32 WD40 Repeat 6 38 38 16.8 0.0094 1 CL0186
Cotton_A_31133_CDS 41 128 37 129 PF08066.12 PMC2NT Domain 6 91 92 38.9 1e-09 1 No_clan
Cotton_A_31133_CDS 279 442 276 445 PF01612.20 DNA_pol_A_exo1 Domain 4 173 176 150.6 3.5e-44 1 CL0219
Cotton_A_31133_CDS 498 562 498 565 PF00570.23 HRDC Domain 1 65 68 45.3 6.3e-12 1 CL0426
Cotton_A_26822_CDS 61 165 61 178 PF14226.6 DIOX_N Family 1 102 118 89.1 3.4e-25 1 CL0029
Cotton_A_26822_CDS 218 312 215 314 PF03171.20 2OG-FeII_Oxy Domain 4 99 101 81.6 4.6e-23 1 CL0029
Cotton_A_09120_CDS 13 193 11 193 PF00227.26 Proteasome Domain 3 190 190 160.9 2.3e-47 1 CL0052
Cotton_A_23378_CDS 66 180 66 263 PF00535.26 Glycos_transf_2 Family 1 106 170 76.4 2.2e-21 1 CL0110
Cotton_A_09362_CDS 36 194 34 198 PF12146.8 Hydrolase_4 Family 3 155 239 55.7 4.2e-15 1 CL0028
Cotton_A_30812_CDS 69 138 66 138 PF13417.6 GST_N_3 Domain 6 75 75 66.5 2.1e-18 1 CL0172
Cotton_A_31296_CDS 6 152 1 153 PF03398.14 Ist1 Family 9 163 164 144.3 3e-42 1 No_clan
Cotton_A_38479_CDS 123 199 116 231 PF13456.6 RVT_3 Domain 7 81 124 22.8 6.2e-05 1 CL0219
Cotton_A_34904_CDS 67 721 66 722 PF03169.15 OPT Family 2 615 616 599.5 8.2e-180 1 No_clan
Cotton_A_21040_CDS 84 318 84 319 PF13561.6 adh_short_C2 Domain 1 233 234 222.9 4e-66 1 CL0063
Cotton_A_07624_CDS 870 1200 870 1200 PF00069.25 Pkinase Domain 1 264 264 158.5 2e-46 1 CL0016
Cotton_A_15798_CDS 70 457 62 457 PF01425.21 Amidase Family 44 451 451 194.8 2.6e-57 1 No_clan
Cotton_A_27065_CDS 1 143 1 143 PF04601.13 DUF569 Domain 1 142 142 215.3 2.3e-64 1 CL0066
Cotton_A_27065_CDS 192 333 192 333 PF04601.13 DUF569 Domain 1 142 142 230.0 6.9e-69 1 CL0066
Cotton_A_03019_CDS 319 349 319 351 PF07498.12 Rho_N Family 1 31 43 31.0 1.8e-07 1 CL0306
Cotton_A_40145_CDS 39 93 39 93 PF01667.17 Ribosomal_S27e Family 1 55 55 91.9 1.5e-26 1 CL0167
Cotton_A_11205_CDS 179 481 178 483 PF00365.20 PFK Domain 2 282 284 211.7 1.3e-62 1 CL0240
Cotton_A_13557_CDS 240 361 239 361 PF13456.6 RVT_3 Domain 2 124 124 96.7 8.1e-28 1 CL0219
Cotton_A_27513_CDS 40 124 38 131 PF01248.26 Ribosomal_L7Ae Domain 3 87 95 86.7 6.5e-25 1 CL0101
Cotton_A_19195_CDS 136 155 136 155 PF15365.6 PNRC Motif 1 20 20 28.6 8.5e-07 1 No_clan
Cotton_A_26308_CDS 13 214 13 215 PF01088.21 Peptidase_C12 Domain 1 210 211 206.4 4e-61 1 CL0125
Cotton_A_15361_CDS 3 67 1 68 PF05617.11 Prolamin_like Domain 10 70 71 44.2 1.6e-11 1 CL0482
Cotton_A_10617_CDS 21 68 21 68 PF00249.31 Myb_DNA-binding Domain 1 46 46 65.0 5.2e-18 1 CL0123
Cotton_A_10617_CDS 74 118 74 119 PF00249.31 Myb_DNA-binding Domain 1 45 46 49.4 3.8e-13 1 CL0123
Cotton_A_07230_CDS 2 103 1 178 PF00704.28 Glyco_hydro_18 Domain 123 223 312 62.9 4e-17 1 CL0058
Cotton_A_07230_CDS 106 353 98 354 PF07714.17 Pkinase_Tyr Domain 29 258 259 143.5 6.9e-42 1 CL0016
Cotton_A_38180_CDS 117 157 116 160 PF00646.33 F-box Domain 3 43 48 28.7 8.4e-07 1 CL0271
Cotton_A_31553_CDS 1 163 1 163 PF00235.19 Profilin Domain 1 127 127 118.2 2.6e-34 1 CL0431
Cotton_A_05566_CDS 163 231 163 234 PF14360.6 PAP2_C Domain 1 71 74 80.8 7.9e-23 1 CL0525
Cotton_A_02968_CDS 206 234 206 236 PF01535.20 PPR Family 1 29 31 27.1 3.1e-06 1 CL0020
Cotton_A_02968_CDS 237 263 237 265 PF01535.20 PPR Family 1 27 31 32.2 7.3e-08 1 CL0020
Cotton_A_02968_CDS 310 332 310 334 PF01535.20 PPR Family 4 26 31 17.0 0.0051 1 CL0020
Cotton_A_14955_CDS 72 198 58 199 PF00190.22 Cupin_1 Domain 21 150 151 106.7 8e-31 1 CL0029
Cotton_A_34310_CDS 27 144 1 145 PF00125.24 Histone Domain 15 130 131 106.9 9.2e-31 1 CL0012
Cotton_A_40449_CDS 5 38 3 43 PF00646.33 F-box Domain 4 37 48 24.2 2.2e-05 1 CL0271
Cotton_A_40449_CDS 211 309 210 335 PF08268.12 FBA_3 Domain 2 92 128 29.4 6.4e-07 1 CL0162
Cotton_A_20044_CDS 85 103 85 103 PF08137.12 DVL Family 1 19 19 42.6 3.7e-11 1 No_clan
Cotton_A_33749_CDS 106 482 95 494 PF01704.18 UDPGP Family 17 357 413 157.8 3.2e-46 1 CL0110
Cotton_A_34207_CDS 15 111 14 111 PF14368.6 LTP_2 Family 2 97 97 60.6 1.1e-16 1 CL0482
Cotton_A_36083_CDS 11 37 11 54 PF00137.21 ATP-synt_C Family 1 27 60 29.2 8.6e-07 1 No_clan
Cotton_A_38617_CDS 11 165 8 178 PF14215.6 bHLH-MYC_N Family 5 155 175 46.7 4.2e-12 1 CL0161
Cotton_A_38617_CDS 317 359 312 360 PF00010.26 HLH Domain 7 52 53 42.0 6.6e-11 1 No_clan
Cotton_A_30925_CDS 19 234 17 256 PF00022.19 Actin Family 4 207 407 112.0 2.5e-32 1 CL0108
Cotton_A_30925_CDS 589 717 538 719 PF00022.19 Actin Family 269 404 407 89.0 2.3e-25 1 CL0108
Cotton_A_18747_CDS 46 286 46 286 PF07250.11 Glyoxal_oxid_N Family 1 240 240 382.5 6e-115 1 No_clan
Cotton_A_18747_CDS 441 545 441 546 PF09118.11 DUF1929 Domain 1 95 96 93.1 9.8e-27 1 CL0159
Cotton_A_06701_CDS 10 182 9 201 PF02705.16 K_trans Family 2 136 534 139.7 1.1e-40 1 CL0062
Cotton_A_06701_CDS 203 311 189 323 PF02705.16 K_trans Family 174 281 534 114.8 3.9e-33 1 CL0062
Cotton_A_33439_CDS 131 290 131 291 PF14299.6 PP2 Family 1 145 146 177.5 1.5e-52 1 No_clan
Cotton_A_07428_CDS 64 154 63 155 PF01241.18 PSI_PSAK Family 2 69 70 80.8 5.3e-23 1 No_clan
Cotton_A_07026_CDS 9 61 9 61 PF14570.6 zf-RING_4 Domain 1 48 48 68.0 4.5e-19 1 CL0229
Cotton_A_07026_CDS 112 190 112 190 PF00076.22 RRM_1 Domain 1 70 70 25.3 1e-05 1 CL0221
Cotton_A_33759_CDS 59 184 59 189 PF03188.16 Cytochrom_B561 Family 1 131 137 45.3 8.8e-12 1 CL0328
Cotton_A_18952_CDS 3 103 2 107 PF03168.13 LEA_2 Domain 2 99 101 38.4 1.4e-09 1 CL0159
Cotton_A_35437_CDS 31 92 29 93 PF00078.27 RVT_1 Family 66 152 222 32.4 6.1e-08 1 CL0027
Cotton_A_01482_CDS 109 134 105 139 PF02151.19 UVR Family 5 30 36 20.9 0.00021 1 CL0671
Cotton_A_01482_CDS 480 608 479 609 PF12014.8 DUF3506 Family 2 138 139 100.1 1e-28 1 No_clan
Cotton_A_17912_CDS 2 141 2 142 PF01156.19 IU_nuc_hydro Domain 170 304 305 45.5 7.3e-12 1 No_clan
Cotton_A_20478_CDS 49 748 49 748 PF05664.11 DUF810 Family 1 686 686 898.8 2.6e-270 1 No_clan
Cotton_A_17554_CDS 211 315 191 327 PF03141.16 Methyltransf_29 Family 112 215 506 24.5 9e-06 1 CL0063
Cotton_A_07396_CDS 33 487 33 492 PF00067.22 p450 Domain 1 458 463 346.9 1.7e-103 1 No_clan
Cotton_A_06239_CDS 58 120 58 142 PF08240.12 ADH_N Domain 1 61 109 33.5 3e-08 1 CL0296
Cotton_A_06239_CDS 220 363 219 363 PF13602.6 ADH_zinc_N_2 Domain 2 133 133 69.7 4.8e-19 1 CL0063
Cotton_A_05612_CDS 24 305 21 305 PF03096.14 Ndr Domain 4 283 283 361.2 2.3e-108 1 CL0028
Cotton_A_17255_CDS 4 98 1 99 PF00931.22 NB-ARC Domain 152 251 252 33.3 2.7e-08 1 CL0023
Cotton_A_17255_CDS 234 284 234 285 PF13855.6 LRR_8 Repeat 1 52 61 38.9 5.2e-10 1 CL0022
Cotton_A_16509_CDS 396 483 395 500 PF13086.6 AAA_11 Domain 2 97 261 58.4 9.4e-16 1 CL0023
Cotton_A_16509_CDS 512 584 509 584 PF13086.6 AAA_11 Domain 193 261 261 42.2 8.3e-11 1 CL0023
Cotton_A_16509_CDS 592 795 591 796 PF13087.6 AAA_12 Domain 2 198 199 165.1 1.5e-48 1 CL0023
Cotton_A_19762_CDS 5 38 1 39 PF06220.12 zf-U1 Domain 3 37 38 41.8 6.6e-11 1 CL0361
Cotton_A_19762_CDS 59 80 55 81 PF00642.24 zf-CCCH Family 5 26 27 28.2 1.3e-06 1 CL0537
Cotton_A_37328_CDS 12 90 12 90 PF00347.23 Ribosomal_L6 Domain 1 76 76 41.5 1.6e-10 1 No_clan
Cotton_A_37328_CDS 103 181 102 181 PF00347.23 Ribosomal_L6 Domain 2 76 76 48.5 1.1e-12 1 No_clan
Cotton_A_16220_CDS 221 281 218 282 PF07647.17 SAM_2 Domain 4 65 66 55.7 4e-15 1 CL0003
Cotton_A_38640_CDS 317 780 316 781 PF01432.20 Peptidase_M3 Family 2 457 458 424.4 7.4e-127 1 CL0126
Cotton_A_35443_CDS 128 229 128 230 PF02362.21 B3 Family 1 100 101 76.4 1.2e-21 1 CL0405
Cotton_A_35443_CDS 254 337 254 337 PF06507.13 Auxin_resp Family 1 83 83 115.1 1.3e-33 1 No_clan
Cotton_A_14142_CDS 7 90 2 95 PF00153.27 Mito_carr Family 8 91 97 56.3 2.2e-15 1 No_clan
Cotton_A_14142_CDS 109 221 107 222 PF00153.27 Mito_carr Family 3 96 97 75.8 1.9e-21 1 No_clan
Cotton_A_14142_CDS 233 321 230 326 PF00153.27 Mito_carr Family 4 90 97 67.7 6.2e-19 1 No_clan
Cotton_A_31884_CDS 62 321 61 323 PF01501.20 Glyco_transf_8 Family 2 254 256 168.1 2.6e-49 1 CL0110
Cotton_A_09672_CDS 58 241 57 242 PF04055.21 Radical_SAM Domain 2 166 167 67.0 2.5e-18 1 CL0036
Cotton_A_03815_CDS 299 343 297 345 PF13920.6 zf-C3HC4_3 Domain 3 48 50 39.3 4.4e-10 1 CL0229
Cotton_A_05365_CDS 82 185 80 186 PF01453.24 B_lectin Domain 3 104 105 106.2 1.2e-30 1 No_clan
Cotton_A_05365_CDS 334 369 322 371 PF08276.11 PAN_2 Domain 27 64 67 29.1 8.1e-07 1 CL0168
Cotton_A_05365_CDS 472 670 470 742 PF00069.25 Pkinase Domain 3 195 264 154.7 2.9e-45 1 CL0016
Cotton_A_18004_CDS 91 348 87 352 PF07714.17 Pkinase_Tyr Domain 5 255 259 110.4 8.9e-32 1 CL0016
Cotton_A_00782_CDS 134 191 134 192 PF05383.17 La Domain 1 58 59 57.0 1.4e-15 1 CL0123
Cotton_A_00782_CDS 224 295 224 298 PF00076.22 RRM_1 Domain 1 61 70 32.3 6.4e-08 1 CL0221
Cotton_A_31663_CDS 8 411 6 416 PF04841.13 Vps16_N Family 3 406 410 275.5 6.4e-82 1 No_clan
Cotton_A_31663_CDS 509 822 509 836 PF04840.12 Vps16_C Family 1 303 320 227.7 1.8e-67 1 No_clan
Cotton_A_02972_CDS 54 554 54 557 PF00118.24 Cpn60_TCP1 Family 1 488 491 285.1 9.3e-85 1 No_clan
Cotton_A_07550_CDS 10 57 10 57 PF00319.18 SRF-TF Domain 1 48 48 92.0 1.2e-26 1 No_clan
Cotton_A_07550_CDS 88 171 81 173 PF01486.17 K-box Family 8 91 93 80.6 6.9e-23 1 No_clan
Cotton_A_25328_CDS 30 104 9 145 PF18052.1 Rx_N Domain 18 84 93 70.7 9.5e-20 1 No_clan
Cotton_A_25328_CDS 187 402 182 434 PF00931.22 NB-ARC Domain 6 223 252 118.9 2.1e-34 1 CL0023
Cotton_A_14546_CDS 142 282 142 284 PF12049.8 DUF3531 Family 1 141 143 179.1 4.2e-53 1 No_clan
Cotton_A_13315_CDS 94 206 87 211 PF00190.22 Cupin_1 Domain 38 145 151 28.4 1e-06 1 CL0029
Cotton_A_13315_CDS 290 437 290 439 PF00190.22 Cupin_1 Domain 1 149 151 111.9 2e-32 1 CL0029
Cotton_A_08304_CDS 35 301 35 301 PF00268.21 Ribonuc_red_sm Domain 1 279 279 393.5 5.4e-118 1 CL0044
Cotton_A_22339_CDS 55 164 55 166 PF02771.16 Acyl-CoA_dh_N Domain 1 111 113 89.3 2.6e-25 1 CL0544
Cotton_A_22339_CDS 170 262 170 262 PF02770.19 Acyl-CoA_dh_M Domain 1 97 97 76.6 1.3e-21 1 No_clan
Cotton_A_22339_CDS 280 419 276 422 PF00441.24 Acyl-CoA_dh_1 Domain 8 147 150 89.6 2.2e-25 1 CL0087
Cotton_A_27080_CDS 96 154 95 154 PF13855.6 LRR_8 Repeat 2 61 61 28.0 1.4e-06 1 CL0022
Cotton_A_27080_CDS 381 441 381 441 PF13855.6 LRR_8 Repeat 1 61 61 29.2 5.6e-07 1 CL0022
Cotton_A_27080_CDS 455 513 453 513 PF13855.6 LRR_8 Repeat 3 61 61 30.6 2.1e-07 1 CL0022
Cotton_A_27080_CDS 746 1011 742 1014 PF00069.25 Pkinase Domain 5 260 264 161.1 3.3e-47 1 CL0016
Cotton_A_04174_CDS 234 290 234 290 PF03106.15 WRKY Domain 1 59 59 90.3 6.6e-26 1 CL0274
Cotton_A_04174_CDS 407 464 407 464 PF03106.15 WRKY Domain 1 59 59 90.0 8.6e-26 1 CL0274
Cotton_A_21482_CDS 233 363 229 364 PF13692.6 Glyco_trans_1_4 Domain 5 133 134 38.3 1.6e-09 1 CL0113
Cotton_A_15411_CDS 38 110 38 112 PF00076.22 RRM_1 Domain 1 63 70 27.6 1.9e-06 1 CL0221
Cotton_A_07718_CDS 62 133 62 133 PF04640.14 PLATZ Family 1 82 82 87.7 5.9e-25 1 No_clan
Cotton_A_07161_CDS 13 239 13 240 PF01088.21 Peptidase_C12 Domain 1 210 211 198.0 1.5e-58 1 CL0125
Cotton_A_20548_CDS 32 308 30 310 PF00069.25 Pkinase Domain 3 259 264 161.8 2e-47 1 CL0016
Cotton_A_20548_CDS 396 642 392 642 PF00481.21 PP2C Family 6 258 258 213.5 3.9e-63 1 CL0238
Cotton_A_20147_CDS 40 391 40 394 PF03140.15 DUF247 Family 1 333 397 242.8 7.2e-72 1 No_clan
Cotton_A_36011_CDS 53 326 49 326 PF07714.17 Pkinase_Tyr Domain 5 259 259 151.7 2.2e-44 1 CL0016
Cotton_A_07297_CDS 177 324 176 342 PF04548.16 AIG1 Domain 2 139 212 75.4 3.9e-21 1 CL0023
Cotton_A_07297_CDS 522 787 521 787 PF11886.8 TOC159_MAD Family 2 267 267 383.0 5.1e-115 1 No_clan
Cotton_A_17369_CDS 12 90 12 90 PF00347.23 Ribosomal_L6 Domain 1 76 76 46.1 5.7e-12 1 No_clan
Cotton_A_17369_CDS 102 181 102 181 PF00347.23 Ribosomal_L6 Domain 1 76 76 49.8 4.2e-13 1 No_clan
Cotton_A_23295_CDS 126 283 126 296 PF00875.18 DNA_photolyase Domain 1 153 164 149.2 1e-43 1 CL0039
Cotton_A_20490_CDS 211 413 211 419 PF03360.16 Glyco_transf_43 Family 1 198 205 216.1 4.3e-64 1 CL0110
Cotton_A_34853_CDS 32 116 20 125 PF01459.22 Porin_3 Family 181 263 270 84.0 1.1e-23 1 CL0193
Cotton_A_12679_CDS 101 221 100 221 PF00254.28 FKBP_C Domain 2 94 94 83.4 1.1e-23 1 CL0487
Cotton_A_25755_CDS 95 229 95 230 PF02789.17 Peptidase_M17_N Domain 1 125 126 93.6 8e-27 1 CL0223
Cotton_A_25755_CDS 266 572 264 572 PF00883.21 Peptidase_M17 Domain 3 311 311 379.6 1.1e-113 1 CL0035
Cotton_A_23455_CDS 83 207 68 208 PF00892.20 EamA Family 16 136 137 33.1 5.2e-08 1 CL0184
Cotton_A_00937_CDS 5 377 4 377 PF00022.19 Actin Family 2 407 407 490.2 3.6e-147 1 CL0108
Cotton_A_38197_CDS 72 166 72 167 PF00173.28 Cyt-b5 Domain 1 73 74 55.1 6.1e-15 1 No_clan
Cotton_A_30576_CDS 34 159 34 161 PF04979.14 IPP-2 Family 1 131 133 94.7 7.4e-27 1 No_clan
Cotton_A_16429_CDS 1 64 1 65 PF00175.21 NAD_binding_1 Domain 49 108 109 46.1 6.3e-12 1 CL0091
Cotton_A_15515_CDS 6 63 3 72 PF03108.15 DBD_Tnp_Mut Family 4 62 67 26.3 5.4e-06 1 CL0274
Cotton_A_15515_CDS 199 270 199 272 PF10551.9 MULE Domain 1 71 96 44.8 1.3e-11 1 CL0219
Cotton_A_00591_CDS 17 297 16 297 PF03619.16 Solute_trans_a Family 2 265 265 288.5 4.9e-86 1 No_clan
Cotton_A_14120_CDS 105 199 91 207 PF12796.7 Ank_2 Repeat 11 74 83 41.5 1.5e-10 1 CL0465
Cotton_A_14120_CDS 325 388 324 388 PF13962.6 PGG Domain 2 66 116 58.9 3.8e-16 1 No_clan
Cotton_A_06394_CDS 195 221 193 221 PF00397.26 WW Domain 4 31 31 39.4 4.6e-10 1 CL0680
Cotton_A_06394_CDS 400 428 385 428 PF01846.19 FF Family 23 51 51 22.1 0.00013 1 CL0584
Cotton_A_06394_CDS 446 496 446 496 PF01846.19 FF Family 1 51 51 50.4 1.9e-13 1 CL0584
Cotton_A_06394_CDS 518 563 515 563 PF01846.19 FF Family 5 51 51 27.3 3e-06 1 CL0584
Cotton_A_06394_CDS 708 755 705 755 PF01846.19 FF Family 4 51 51 23.3 5.4e-05 1 CL0584
Cotton_A_11330_CDS 14 64 13 66 PF08122.12 NDUF_B12 Family 6 55 56 28.7 1e-06 1 No_clan
Cotton_A_04458_CDS 1 72 1 75 PF00083.24 Sugar_tr Family 79 153 452 54.8 7.1e-15 1 CL0015
Cotton_A_32029_CDS 94 236 92 244 PF00270.29 DEAD Domain 8 150 176 123.9 5.7e-36 1 CL0023
Cotton_A_03169_CDS 56 112 56 112 PF08246.12 Inhibitor_I29 Domain 1 58 58 52.7 4.3e-14 1 No_clan
Cotton_A_03169_CDS 138 353 138 353 PF00112.23 Peptidase_C1 Domain 1 218 218 256.4 2.8e-76 1 CL0125
Cotton_A_00483_CDS 38 274 37 276 PF00194.21 Carb_anhydrase Domain 2 252 254 148.3 2.9e-43 1 No_clan
Cotton_A_13094_CDS 52 112 52 112 PF02704.14 GASA Family 1 60 60 70.4 1.1e-19 1 No_clan
Cotton_A_01101_CDS 139 392 138 392 PF07714.17 Pkinase_Tyr Domain 2 259 259 228.2 9.8e-68 1 CL0016
Cotton_A_25108_CDS 14 61 14 61 PF16891.5 STPPase_N Family 1 48 48 72.4 3e-20 1 No_clan
Cotton_A_25108_CDS 63 254 62 257 PF00149.28 Metallophos Domain 2 201 204 139.4 2.1e-40 1 CL0163
Cotton_A_12191_CDS 139 242 138 252 PF00135.28 COesterase Domain 90 204 512 50.8 1.2e-13 1 CL0028
Cotton_A_38991_CDS 4 73 3 74 PF00407.19 Bet_v_1 Domain 2 71 151 36.1 5.3e-09 1 CL0209
Cotton_A_02456_CDS 39 83 39 84 PF00249.31 Myb_DNA-binding Domain 1 45 46 45.9 4.7e-12 1 CL0123
Cotton_A_13908_CDS 3 90 3 93 PF17800.1 NPL Domain 1 102 105 45.1 1.2e-11 1 CL0055
Cotton_A_27271_CDS 19 67 19 67 PF03107.16 C1_2 Domain 1 47 47 26.9 4.3e-06 1 CL0006
Cotton_A_27271_CDS 87 129 74 129 PF03107.16 C1_2 Domain 10 47 47 26.3 7e-06 1 CL0006
Cotton_A_27271_CDS 144 191 143 192 PF03107.16 C1_2 Domain 2 46 47 35.3 1e-08 1 CL0006
Cotton_A_27271_CDS 203 246 202 246 PF03107.16 C1_2 Domain 2 47 47 27.6 2.6e-06 1 CL0006
Cotton_A_27271_CDS 257 298 256 299 PF03107.16 C1_2 Domain 2 46 47 29.1 9e-07 1 CL0006
Cotton_A_27271_CDS 407 446 406 449 PF03107.16 C1_2 Domain 2 41 47 27.4 3.1e-06 1 CL0006
Cotton_A_26254_CDS 55 318 55 323 PF09258.10 Glyco_transf_64 Domain 1 240 245 259.1 3.3e-77 1 CL0110
Cotton_A_29559_CDS 89 484 86 495 PF01373.17 Glyco_hydro_14 Domain 4 391 402 239.9 4.4e-71 1 CL0058
Cotton_A_11482_CDS 6 96 1 98 PF03171.20 2OG-FeII_Oxy Domain 9 99 101 82.9 1.9e-23 1 CL0029
Cotton_A_10609_CDS 29 93 26 93 PF02874.23 ATP-synt_ab_N Domain 5 69 69 59.5 3.3e-16 1 CL0275
Cotton_A_10609_CDS 150 365 150 365 PF00006.25 ATP-synt_ab Domain 1 213 213 252.8 2.5e-75 1 CL0023
Cotton_A_10609_CDS 372 496 372 497 PF00306.27 ATP-synt_ab_C Domain 1 125 126 141.6 1.5e-41 1 No_clan
Cotton_A_38248_CDS 31 289 31 289 PF07651.16 ANTH Domain 1 277 277 297.2 8.4e-89 1 CL0009
Cotton_A_09734_CDS 523 587 522 588 PF12174.8 RST Domain 2 66 67 102.2 1.1e-29 1 No_clan
Cotton_A_22472_CDS 12 342 12 342 PF03942.15 DTW Domain 1 198 198 183.6 3.4e-54 1 No_clan
Cotton_A_14167_CDS 31 79 30 79 PF08263.12 LRRNT_2 Family 2 41 41 27.5 2.9e-06 1 No_clan
Cotton_A_14167_CDS 306 324 306 328 PF00560.33 LRR_1 Repeat 1 19 23 9.8 1.4 1 CL0022
Cotton_A_14167_CDS 499 560 498 560 PF13855.6 LRR_8 Repeat 2 61 61 36.4 3.2e-09 1 CL0022
Cotton_A_14167_CDS 857 912 855 912 PF13855.6 LRR_8 Repeat 6 61 61 33.0 3.8e-08 1 CL0022
Cotton_A_21462_CDS 99 375 97 384 PF01062.21 Bestrophin Family 3 289 295 142.4 1.9e-41 1 No_clan
Cotton_A_30506_CDS 9 86 9 111 PF14226.6 DIOX_N Family 1 76 118 28.8 1.6e-06 1 CL0029
Cotton_A_30506_CDS 164 262 161 262 PF03171.20 2OG-FeII_Oxy Domain 4 101 101 65.7 4.3e-18 1 CL0029
Cotton_A_07536_CDS 185 242 185 242 PF08031.12 BBE Domain 1 46 46 77.9 4.3e-22 1 CL0277
Cotton_A_06225_CDS 68 236 67 240 PF00485.18 PRK Domain 2 188 197 89.0 3.4e-25 1 CL0023
Cotton_A_06225_CDS 258 404 250 404 PF01928.21 CYTH Domain 7 179 179 53.4 2.9e-14 1 CL0273
Cotton_A_29021_CDS 12 83 11 84 PF13656.6 RNA_pol_L_2 Domain 2 74 75 96.4 6e-28 1 CL0509
Cotton_A_28368_CDS 165 191 165 195 PF01535.20 PPR Family 1 27 31 25.0 1.4e-05 1 CL0020
Cotton_A_28368_CDS 263 303 263 310 PF13041.6 PPR_2 Repeat 1 41 50 32.9 5.6e-08 1 CL0020
Cotton_A_28368_CDS 364 411 364 413 PF13041.6 PPR_2 Repeat 1 49 50 40.1 3e-10 1 CL0020
Cotton_A_28368_CDS 466 513 465 514 PF13041.6 PPR_2 Repeat 2 49 50 41.6 1e-10 1 CL0020
Cotton_A_28368_CDS 540 562 539 565 PF01535.20 PPR Family 2 24 31 11.5 0.28 1 CL0020
Cotton_A_28368_CDS 639 763 639 763 PF14432.6 DYW_deaminase Family 1 127 127 129.6 5.8e-38 1 CL0109
Cotton_A_27314_CDS 186 277 184 277 PF18808.1 Importin_rep_4 Repeat 3 90 90 69.8 1.8e-19 1 No_clan
Cotton_A_00173_CDS 24 225 24 232 PF05216.13 UNC-50 Family 1 192 221 202.1 8.4e-60 1 No_clan
Cotton_A_36145_CDS 89 548 86 548 PF03917.17 GSH_synth_ATP Domain 4 375 375 453.1 6.1e-136 1 CL0483
Cotton_A_36145_CDS 282 381 281 381 PF03199.15 GSH_synthase Domain 2 103 103 111.4 2.5e-32 1 CL0483
Cotton_A_10468_CDS 1 46 1 49 PF13724.6 DNA_binding_2 Domain 1 44 47 70.0 1.6e-19 1 No_clan
Cotton_A_10468_CDS 256 312 256 313 PF04844.13 Ovate Family 1 57 58 87.9 3.1e-25 1 No_clan
Cotton_A_16048_CDS 40 176 37 178 PF10075.9 CSN8_PSD8_EIF3K Family 5 142 144 120.9 4e-35 1 CL0123
Cotton_A_07050_CDS 15 80 12 81 PF13456.6 RVT_3 Domain 57 123 124 36.6 3.3e-09 1 CL0219
Cotton_A_01323_CDS 74 213 74 215 PF01565.23 FAD_binding_4 Domain 1 136 139 87.4 7.1e-25 1 CL0077
Cotton_A_01323_CDS 471 530 471 530 PF08031.12 BBE Domain 1 46 46 78.5 2.9e-22 1 CL0277
Cotton_A_31517_CDS 29 483 29 483 PF00759.19 Glyco_hydro_9 Domain 1 411 411 482.7 1.2e-144 1 CL0059
Cotton_A_08958_CDS 93 414 90 415 PF14870.6 PSII_BNR Domain 4 302 303 411.1 2.7e-123 1 CL0434
Cotton_A_02324_CDS 107 244 107 251 PF10250.9 O-FucT Family 1 165 336 97.4 1.3e-27 1 CL0113
Cotton_A_16308_CDS 86 186 86 193 PF05911.11 FPP Coiled-coil 1 101 867 132.6 1.6e-38 1 No_clan
Cotton_A_16308_CDS 201 267 199 271 PF05911.11 FPP Coiled-coil 139 205 867 56.7 1.3e-15 1 No_clan
Cotton_A_16308_CDS 319 391 305 407 PF05911.11 FPP Coiled-coil 352 426 867 62.8 1.9e-17 1 No_clan
Cotton_A_16308_CDS 503 628 491 633 PF05911.11 FPP Coiled-coil 755 861 867 40.5 1.1e-10 1 No_clan
Cotton_A_32669_CDS 29 101 29 101 PF07983.13 X8 Domain 1 76 76 74.3 9.2e-21 1 No_clan
Cotton_A_00535_CDS 5 374 1 388 PF00067.22 p450 Domain 65 443 463 190.5 4.5e-56 1 No_clan
Cotton_A_17577_CDS 14 103 14 103 PF00447.17 HSF_DNA-bind Domain 1 96 96 103.1 9.1e-30 1 CL0123
Cotton_A_05233_CDS 5 181 1 200 PF00955.21 HCO3_cotransp Family 5 175 508 133.1 1.3e-38 1 CL0062
Cotton_A_05233_CDS 189 372 180 377 PF00955.21 HCO3_cotransp Family 233 411 508 88.5 4.2e-25 1 CL0062
Cotton_A_05233_CDS 453 489 448 491 PF00955.21 HCO3_cotransp Family 423 459 508 24.7 9.3e-06 1 CL0062
Cotton_A_21004_CDS 55 185 55 185 PF03641.14 Lysine_decarbox Family 1 132 132 141.5 1.6e-41 1 CL0349
Cotton_A_05841_CDS 613 659 612 660 PF00628.29 PHD Domain 2 51 52 38.3 9.1e-10 1 CL0390
Cotton_A_18193_CDS 29 631 29 631 PF00888.22 Cullin Family 1 618 618 736.0 3.9e-221 1 No_clan
Cotton_A_18193_CDS 663 725 663 725 PF10557.9 Cullin_Nedd8 Domain 1 63 63 91.9 1.9e-26 1 CL0123
Cotton_A_12658_CDS 1 251 1 252 PF05742.12 TANGO2 Family 1 252 253 225.0 1.5e-66 1 No_clan
Cotton_A_18433_CDS 11 140 10 146 PF10358.9 NT-C2 Family 2 138 146 72.3 3.4e-20 1 CL0154
Cotton_A_19774_CDS 170 405 168 406 PF00931.22 NB-ARC Domain 3 251 252 116.2 1.3e-33 1 CL0023
Cotton_A_13464_CDS 89 260 89 268 PF14543.6 TAXi_N Domain 1 171 178 101.0 8.6e-29 1 CL0129
Cotton_A_13464_CDS 301 463 301 464 PF14541.6 TAXi_C Domain 1 160 161 116.0 1.4e-33 1 CL0129
Cotton_A_12629_CDS 5 176 3 176 PF06351.11 Allene_ox_cyc Family 3 175 175 310.1 3.7e-93 1 CL0650
Cotton_A_27245_CDS 3 292 1 292 PF01593.24 Amino_oxidase Domain 164 452 452 254.8 2.1e-75 1 CL0063
Cotton_A_18287_CDS 267 430 183 435 PF00201.18 UDPGT Family 270 418 499 76.3 2.1e-21 1 CL0113
Cotton_A_23801_CDS 185 218 183 218 PF14416.6 PMR5N Domain 20 53 53 48.8 6.6e-13 1 No_clan
Cotton_A_23801_CDS 263 464 237 465 PF13839.6 PC-Esterase Family 82 282 283 197.2 4.5e-58 1 CL0264
Cotton_A_05191_CDS 49 137 48 137 PF10251.9 PEN-2 Family 2 93 93 100.7 4.6e-29 1 No_clan
Cotton_A_08255_CDS 1 307 1 308 PF12166.8 Piezo_RRas_bdg Family 83 424 425 225.9 1.1e-66 1 No_clan
Cotton_A_29923_CDS 95 186 94 209 PF02338.19 OTU Family 2 98 127 42.5 8.4e-11 1 CL0125
Cotton_A_11143_CDS 84 116 80 117 PF08263.12 LRRNT_2 Family 7 40 41 21.1 0.00029 1 No_clan
Cotton_A_11143_CDS 153 209 150 210 PF13855.6 LRR_8 Repeat 4 60 61 27.5 1.9e-06 1 CL0022
Cotton_A_18491_CDS 71 115 71 115 PF12023.8 DUF3511 Family 1 45 45 62.3 2.7e-17 1 No_clan
Cotton_A_03359_CDS 1 149 1 151 PF00275.20 EPSP_synthase Family 48 203 417 65.1 4.5e-18 1 CL0290
Cotton_A_00202_CDS 21 63 21 63 PF00097.25 zf-C3HC4 Domain 1 41 41 28.8 8e-07 1 CL0229
Cotton_A_20676_CDS 78 116 78 117 PF02736.19 Myosin_N Domain 1 39 40 38.7 6.5e-10 1 CL0010
Cotton_A_20676_CDS 132 531 132 532 PF00063.21 Myosin_head Domain 1 400 677 538.5 2.1e-161 1 CL0023
Cotton_A_20676_CDS 770 788 769 789 PF00612.27 IQ Motif 2 20 21 14.4 0.024 1 CL0220
Cotton_A_15498_CDS 69 184 69 185 PF00413.24 Peptidase_M10 Domain 1 124 158 43.9 2.1e-11 1 CL0126
Cotton_A_37093_CDS 25 114 25 114 PF00447.17 HSF_DNA-bind Domain 1 96 96 103.7 6.2e-30 1 CL0123
Cotton_A_24771_CDS 21 49 18 55 PF14244.6 Retrotran_gag_3 Family 12 40 48 24.1 2.2e-05 1 CL0523
Cotton_A_10229_CDS 43 463 43 479 PF00067.22 p450 Domain 1 441 463 205.4 1.4e-60 1 No_clan
Cotton_A_10811_CDS 26 63 22 63 PF14244.6 Retrotran_gag_3 Family 11 48 48 24.7 1.5e-05 1 CL0523
Cotton_A_39875_CDS 108 157 108 157 PF13041.6 PPR_2 Repeat 1 50 50 50.5 1.7e-13 1 CL0020
Cotton_A_39875_CDS 213 258 213 260 PF13041.6 PPR_2 Repeat 1 46 50 41.2 1.3e-10 1 CL0020
Cotton_A_39875_CDS 324 351 321 351 PF01535.20 PPR Family 4 31 31 10.1 0.81 1 CL0020
Cotton_A_13310_CDS 5 222 5 226 PF00009.27 GTP_EFTU Domain 1 190 194 182.5 6.2e-54 1 CL0023
Cotton_A_13310_CDS 248 313 248 315 PF03144.25 GTP_EFTU_D2 Domain 1 72 74 53.2 3e-14 1 CL0575
Cotton_A_13310_CDS 322 429 321 430 PF03143.17 GTP_EFTU_D3 Domain 2 111 112 134.2 2.3e-39 1 No_clan
Cotton_A_19502_CDS 1 195 1 196 PF03169.15 OPT Family 438 615 616 180.4 6e-53 1 No_clan
Cotton_A_20716_CDS 74 327 74 329 PF01501.20 Glyco_transf_8 Family 1 254 256 186.0 8.7e-55 1 CL0110
Cotton_A_00894_CDS 1027 1067 1025 1070 PF00249.31 Myb_DNA-binding Domain 3 43 46 29.7 5.3e-07 1 CL0123
Cotton_A_30236_CDS 5 136 2 153 PF00069.25 Pkinase Domain 24 152 264 88.4 5e-25 1 CL0016
Cotton_A_20232_CDS 33 381 33 381 PF00282.19 Pyridoxal_deC Domain 1 375 375 366.9 8.9e-110 1 CL0061
Cotton_A_26256_CDS 11 134 7 151 PF00892.20 EamA Family 5 126 137 49.4 4.9e-13 1 CL0184
Cotton_A_26256_CDS 179 317 178 318 PF00892.20 EamA Family 2 136 137 46.7 3.3e-12 1 CL0184
Cotton_A_23459_CDS 66 118 65 118 PF14416.6 PMR5N Domain 2 53 53 68.2 5.8e-19 1 No_clan
Cotton_A_23459_CDS 119 403 119 404 PF13839.6 PC-Esterase Family 1 282 283 293.0 2.8e-87 1 CL0264
Cotton_A_34918_CDS 100 299 100 299 PF03145.16 Sina Family 1 200 200 261.0 7.7e-78 1 CL0389
Cotton_A_13417_CDS 48 70 46 70 PF01535.20 PPR Family 3 25 31 11.4 0.3 1 CL0020
Cotton_A_13417_CDS 79 109 79 109 PF01535.20 PPR Family 1 31 31 27.0 3.3e-06 1 CL0020
Cotton_A_13417_CDS 152 179 149 179 PF01535.20 PPR Family 4 31 31 16.0 0.011 1 CL0020
Cotton_A_13417_CDS 180 225 178 226 PF13041.6 PPR_2 Repeat 4 49 50 38.3 1.1e-09 1 CL0020
Cotton_A_13417_CDS 278 325 278 327 PF13041.6 PPR_2 Repeat 1 48 50 37.7 1.7e-09 1 CL0020
Cotton_A_13417_CDS 353 379 352 381 PF01535.20 PPR Family 2 28 31 18.6 0.0015 1 CL0020
Cotton_A_13417_CDS 452 572 452 572 PF14432.6 DYW_deaminase Family 1 127 127 99.1 1.7e-28 1 CL0109
Cotton_A_00283_CDS 58 157 58 157 PF07107.11 WI12 Domain 1 109 109 120.4 3.6e-35 1 CL0051
Cotton_A_33789_CDS 91 140 87 140 PF04570.14 zf-FLZ Domain 5 54 54 91.0 2.4e-26 1 CL0175
Cotton_A_39228_CDS 16 110 6 113 PF00421.19 PSII Family 403 504 507 101.1 5.8e-29 1 No_clan
Cotton_A_01636_CDS 43 373 43 374 PF05055.12 DUF677 Family 1 335 336 400.2 5.8e-120 1 CL0133
Cotton_A_16243_CDS 22 64 21 67 PF00646.33 F-box Domain 3 45 48 32.7 4.6e-08 1 CL0271
Cotton_A_16243_CDS 394 495 333 495 PF10442.9 FIST_C Domain 53 130 130 37.0 2.8e-09 1 No_clan
Cotton_A_03769_CDS 133 238 123 240 PF00307.31 CH Domain 11 106 109 64.6 8.1e-18 1 CL0188
Cotton_A_03769_CDS 269 370 268 372 PF00307.31 CH Domain 2 107 109 75.8 2.7e-21 1 CL0188
Cotton_A_03769_CDS 395 498 393 499 PF00307.31 CH Domain 3 107 109 70.4 1.3e-19 1 CL0188
Cotton_A_03769_CDS 519 621 514 623 PF00307.31 CH Domain 6 107 109 66.5 2.1e-18 1 CL0188
Cotton_A_35014_CDS 29 215 28 215 PF00445.18 Ribonuclease_T2 Domain 2 182 182 86.1 3.2e-24 1 No_clan
Cotton_A_18655_CDS 2 52 2 54 PF09713.10 A_thal_3526 Domain 1 51 53 79.6 1.5e-22 1 No_clan
Cotton_A_11355_CDS 26 64 23 64 PF08263.12 LRRNT_2 Family 4 41 41 47.6 1.5e-12 1 No_clan
Cotton_A_11355_CDS 126 187 126 187 PF13855.6 LRR_8 Repeat 1 61 61 35.9 4.6e-09 1 CL0022
Cotton_A_11355_CDS 201 259 199 259 PF13855.6 LRR_8 Repeat 3 61 61 44.8 7.7e-12 1 CL0022
Cotton_A_11355_CDS 320 379 319 379 PF13855.6 LRR_8 Repeat 2 61 61 47.1 1.5e-12 1 CL0022
Cotton_A_11355_CDS 415 474 414 474 PF13855.6 LRR_8 Repeat 2 61 61 30.1 3e-07 1 CL0022
Cotton_A_37146_CDS 78 207 76 208 PF00134.23 Cyclin_N Domain 3 126 127 103.3 7.4e-30 1 CL0065
Cotton_A_37146_CDS 211 301 210 321 PF02984.19 Cyclin_C Domain 2 90 119 44.0 2e-11 1 CL0065
Cotton_A_31699_CDS 92 136 92 136 PF13639.6 zf-RING_2 Domain 1 44 44 48.2 1e-12 1 CL0229
Cotton_A_12705_CDS 25 295 25 295 PF06418.14 CTP_synth_N Domain 1 265 265 413.4 3.5e-124 1 CL0023
Cotton_A_12705_CDS 332 406 331 414 PF00117.28 GATase Domain 2 63 190 36.7 3.4e-09 1 CL0014
Cotton_A_17535_CDS 61 89 51 89 PF00400.32 WD40 Repeat 11 38 38 12.3 0.25 1 CL0186
Cotton_A_17535_CDS 97 134 96 135 PF00400.32 WD40 Repeat 2 37 38 16.0 0.017 1 CL0186
Cotton_A_17535_CDS 142 178 140 178 PF00400.32 WD40 Repeat 4 38 38 25.2 2.1e-05 1 CL0186
Cotton_A_17535_CDS 187 221 183 221 PF00400.32 WD40 Repeat 6 38 38 22.5 0.00015 1 CL0186
Cotton_A_17535_CDS 228 265 226 265 PF00400.32 WD40 Repeat 3 38 38 22.9 0.00011 1 CL0186
Cotton_A_18066_CDS 21 305 21 305 PF03096.14 Ndr Domain 1 283 283 369.2 8.4e-111 1 CL0028
Cotton_A_23925_CDS 288 478 287 478 PF00270.29 DEAD Domain 2 176 176 165.2 1.2e-48 1 CL0023
Cotton_A_23925_CDS 513 621 512 621 PF00271.31 Helicase_C Family 2 111 111 113.3 6.9e-33 1 CL0023
Cotton_A_12319_CDS 307 375 306 386 PF01189.17 Methyltr_RsmB-F Family 2 70 200 58.5 6.9e-16 1 CL0063
Cotton_A_12319_CDS 467 561 424 613 PF01189.17 Methyltr_RsmB-F Family 68 165 200 65.8 4.1e-18 1 CL0063
Cotton_A_06287_CDS 490 620 489 636 PF00179.26 UQ_con Domain 2 121 140 83.0 1.5e-23 1 CL0208
Cotton_A_09624_CDS 38 86 37 86 PF10509.9 GalKase_gal_bdg Domain 2 49 49 81.0 3.3e-23 1 CL0329
Cotton_A_09624_CDS 154 219 154 221 PF00288.26 GHMP_kinases_N Family 1 64 66 47.7 1.3e-12 1 CL0329
Cotton_A_09624_CDS 391 467 386 468 PF08544.13 GHMP_kinases_C Family 6 84 85 55.5 5.5e-15 1 CL0677
Cotton_A_36830_CDS 138 314 137 319 PF00270.29 DEAD Domain 2 171 176 87.3 1e-24 1 CL0023
Cotton_A_36830_CDS 313 365 303 367 PF00658.18 PABP Family 13 65 68 48.8 5.8e-13 1 No_clan
Cotton_A_24570_CDS 5 137 5 137 PF09440.10 eIF3_N Domain 1 133 133 170.4 2.5e-50 1 No_clan
Cotton_A_09280_CDS 6 98 5 113 PF00168.30 C2 Domain 2 91 103 39.8 4.2e-10 1 CL0154
Cotton_A_13824_CDS 80 133 79 133 PF14416.6 PMR5N Domain 2 53 53 79.2 2.1e-22 1 No_clan
Cotton_A_13824_CDS 134 423 134 424 PF13839.6 PC-Esterase Family 1 282 283 305.1 6.1e-91 1 CL0264
Cotton_A_05380_CDS 434 496 433 508 PF12329.8 TMF_DNA_bd Coiled-coil 2 63 74 38.9 6.2e-10 1 No_clan
Cotton_A_05380_CDS 826 933 819 933 PF12325.8 TMF_TATA_bd Coiled-coil 8 115 115 108.6 2e-31 1 No_clan
Cotton_A_16458_CDS 85 159 84 162 PF00106.25 adh_short Domain 2 75 195 57.9 9.1e-16 1 CL0063
Cotton_A_10020_CDS 15 121 15 135 PF02365.15 NAM Family 1 107 126 100.3 1.4e-28 1 No_clan
Cotton_A_18156_CDS 99 114 98 115 PF00098.23 zf-CCHC Domain 2 17 18 22.7 7.1e-05 1 CL0511
Cotton_A_18424_CDS 150 186 150 189 PF00805.22 Pentapeptide Repeat 1 37 40 34.1 1.5e-08 1 CL0505
Cotton_A_18424_CDS 192 224 191 226 PF00805.22 Pentapeptide Repeat 8 40 40 24.7 1.3e-05 1 CL0505
Cotton_A_22832_CDS 64 115 64 115 PF01805.20 Surp Family 1 53 53 76.7 1e-21 1 No_clan
Cotton_A_22832_CDS 195 246 195 246 PF01805.20 Surp Family 1 53 53 66.1 2.1e-18 1 No_clan
Cotton_A_22832_CDS 266 478 263 479 PF12230.8 PRP21_like_P Family 4 216 217 200.2 3.7e-59 1 No_clan
Cotton_A_22832_CDS 745 812 733 812 PF00240.23 ubiquitin Domain 6 72 72 37.6 1.4e-09 1 CL0072
Cotton_A_20533_CDS 82 253 82 257 PF05834.12 Lycopene_cycl Family 1 171 380 198.5 1.7e-58 1 CL0063
Cotton_A_20298_CDS 436 470 436 470 PF13431.6 TPR_17 Repeat 1 34 34 22.2 0.00012 1 CL0020
Cotton_A_39298_CDS 7 132 6 132 PF02365.15 NAM Family 2 126 126 129.7 1.2e-37 1 No_clan
Cotton_A_12851_CDS 26 139 5 141 PF04970.13 LRAT Domain 25 125 127 59.7 3.5e-16 1 CL0125
Cotton_A_01762_CDS 9 80 9 80 PF08079.12 Ribosomal_L30_N Domain 1 72 72 84.3 5.2e-24 1 No_clan
Cotton_A_01762_CDS 85 135 85 135 PF00327.20 Ribosomal_L30 Domain 1 51 51 71.8 3.1e-20 1 No_clan
Cotton_A_15899_CDS 31 184 31 187 PF00856.28 SET Family 2 164 169 30.4 4.4e-07 1 No_clan
Cotton_A_05679_CDS 16 66 16 67 PF00847.20 AP2 Domain 1 53 54 39.9 3.7e-10 1 CL0081
Cotton_A_08410_CDS 15 302 15 304 PF14576.6 SEO_N Family 1 285 287 347.6 4.8e-104 1 No_clan
Cotton_A_08410_CDS 471 701 470 702 PF14577.6 SEO_C Family 2 231 232 330.6 4.4e-99 1 No_clan
Cotton_A_00825_CDS 22 61 21 61 PF08263.12 LRRNT_2 Family 2 41 41 37.7 1.8e-09 1 No_clan
Cotton_A_00825_CDS 137 156 137 158 PF00560.33 LRR_1 Repeat 1 20 23 11.0 0.53 1 CL0022
Cotton_A_00825_CDS 162 190 161 201 PF00560.33 LRR_1 Repeat 2 20 23 9.8 1.4 1 CL0022
Cotton_A_00825_CDS 272 539 271 543 PF00069.25 Pkinase Domain 2 257 264 134.7 3.6e-39 1 CL0016
Cotton_A_00040_CDS 90 296 85 364 PF07714.17 Pkinase_Tyr Domain 6 208 259 147.5 4.3e-43 1 CL0016
Cotton_A_21202_CDS 134 158 134 168 PF03106.15 WRKY Domain 1 25 59 29.3 7.6e-07 1 CL0274
Cotton_A_21202_CDS 198 410 188 412 PF03901.17 Glyco_transf_22 Family 14 196 417 41.7 8.9e-11 1 CL0111
Cotton_A_21202_CDS 411 540 411 554 PF03901.17 Glyco_transf_22 Family 258 388 417 55.2 6.9e-15 1 CL0111
Cotton_A_23169_CDS 80 226 79 226 PF00929.24 RNase_T Family 2 165 165 54.7 1.6e-14 1 CL0219
Cotton_A_17124_CDS 6 212 5 216 PF05056.12 DUF674 Family 2 231 449 139.1 1.9e-40 1 No_clan
Cotton_A_23021_CDS 40 370 33 375 PF00295.17 Glyco_hydro_28 Domain 7 318 325 259.5 3.9e-77 1 CL0268
Cotton_A_38373_CDS 58 335 58 335 PF01545.21 Cation_efflux Family 1 199 199 164.0 3.6e-48 1 No_clan
Cotton_A_18764_CDS 122 193 119 194 PF01095.19 Pectinesterase Family 127 201 298 60.5 1.1e-16 1 CL0268
Cotton_A_18764_CDS 194 247 192 248 PF01095.19 Pectinesterase Family 241 297 298 28.8 4.7e-07 1 CL0268
Cotton_A_34767_CDS 7 79 6 79 PF11523.8 DUF3223 Family 2 75 75 84.7 6e-24 1 No_clan
Cotton_A_22639_CDS 1 88 1 89 PF00223.19 PsaA_PsaB Family 592 679 718 130.3 7e-38 1 No_clan
Cotton_A_02741_CDS 16 79 15 80 PF00191.20 Annexin Family 2 65 66 53.1 2.4e-14 1 No_clan
Cotton_A_02741_CDS 88 151 87 152 PF00191.20 Annexin Family 2 65 66 39.6 4e-10 1 No_clan
Cotton_A_02741_CDS 171 236 170 236 PF00191.20 Annexin Family 2 66 66 74.9 3.9e-21 1 No_clan
Cotton_A_02741_CDS 246 311 246 311 PF00191.20 Annexin Family 1 66 66 81.4 3.6e-23 1 No_clan
Cotton_A_18601_CDS 14 79 14 79 PF00808.23 CBFD_NFYB_HMF Domain 1 65 65 77.0 1e-21 1 CL0012
Cotton_A_18247_CDS 1 305 1 305 PF00332.18 Glyco_hydro_17 Domain 8 313 313 346.8 1.4e-103 1 CL0058
Cotton_A_39490_CDS 1 51 1 59 PF00067.22 p450 Domain 364 415 463 48.0 7.6e-13 1 No_clan
Cotton_A_05267_CDS 4 192 4 192 PF10173.9 Mit_KHE1 Family 1 190 190 147.9 3.6e-43 1 No_clan
Cotton_A_12454_CDS 54 260 48 260 PF00230.20 MIP Family 7 227 227 173.5 5.2e-51 1 No_clan
Cotton_A_16916_CDS 279 308 273 309 PF00400.32 WD40 Repeat 9 37 38 13.1 0.14 1 CL0186
Cotton_A_16916_CDS 477 511 473 511 PF00400.32 WD40 Repeat 6 38 38 15.9 0.017 1 CL0186
Cotton_A_27058_CDS 23 324 23 357 PF13968.6 DUF4220 Family 1 302 347 196.4 8.7e-58 1 No_clan
Cotton_A_27058_CDS 607 656 603 656 PF04578.13 DUF594 Family 6 55 55 67.5 5.5e-19 1 No_clan
Cotton_A_20541_CDS 41 176 37 182 PF13191.6 AAA_16 Domain 10 165 170 34.8 2e-08 1 CL0023
Cotton_A_19983_CDS 101 122 99 122 PF00642.24 zf-CCCH Family 4 26 27 22.0 0.00011 1 CL0537
Cotton_A_19983_CDS 132 167 129 167 PF00400.32 WD40 Repeat 4 38 38 23.8 5.8e-05 1 CL0186
Cotton_A_19983_CDS 255 288 252 288 PF00400.32 WD40 Repeat 4 38 38 23.5 7.1e-05 1 CL0186
Cotton_A_19983_CDS 293 326 292 326 PF00400.32 WD40 Repeat 2 36 38 18.5 0.0026 1 CL0186
Cotton_A_09087_CDS 70 250 67 251 PF17047.5 SMP_LBD Domain 4 179 180 46.6 2.6e-12 1 CL0648
Cotton_A_40514_CDS 20 174 19 175 PF04535.12 DUF588 Domain 2 149 150 127.5 3.4e-37 1 CL0396
Cotton_A_03812_CDS 32 99 23 100 PF04113.14 Gpi16 Family 10 77 559 70.2 1.2e-19 1 No_clan
Cotton_A_03812_CDS 99 569 98 576 PF04113.14 Gpi16 Family 126 552 559 424.4 6e-127 1 No_clan
Cotton_A_15608_CDS 12 266 12 266 PF00069.25 Pkinase Domain 1 264 264 244.1 1.6e-72 1 CL0016
Cotton_A_15608_CDS 311 367 310 367 PF03822.14 NAF Domain 2 54 54 77.9 4.7e-22 1 CL0573
Cotton_A_05560_CDS 64 88 63 89 PF13912.6 zf-C2H2_6 Domain 2 26 27 28.5 1.1e-06 1 CL0361
Cotton_A_02625_CDS 1 250 1 251 PF03159.18 XRN_N Family 1 241 242 321.5 3e-96 1 CL0280
Cotton_A_02625_CDS 317 619 316 620 PF17846.1 XRN_M Domain 2 302 443 402.1 3.2e-120 1 No_clan
Cotton_A_14801_CDS 70 333 65 334 PF00664.23 ABC_membrane Family 6 273 274 78.0 9.2e-22 1 CL0241
Cotton_A_14801_CDS 398 445 398 461 PF00005.27 ABC_tran Domain 1 48 137 29.6 8.2e-07 1 CL0023
Cotton_A_14801_CDS 697 903 657 914 PF00664.23 ABC_membrane Family 43 249 274 95.8 3.5e-27 1 CL0241
Cotton_A_14801_CDS 954 1101 953 1101 PF00005.27 ABC_tran Domain 2 137 137 102.9 2e-29 1 CL0023
Cotton_A_22406_CDS 13 94 1 96 PF00125.24 Histone Domain 47 129 131 53.6 2.8e-14 1 CL0012
Cotton_A_22406_CDS 97 130 97 131 PF16211.5 Histone_H2A_C Family 1 34 35 65.2 3.1e-18 1 No_clan
Cotton_A_19865_CDS 59 152 59 153 PF03101.15 FAR1 Domain 1 89 90 64.5 1.1e-17 1 CL0274
Cotton_A_19865_CDS 275 366 274 368 PF10551.9 MULE Domain 2 94 96 60.7 1.3e-16 1 CL0219
Cotton_A_19865_CDS 558 584 554 586 PF04434.17 SWIM Domain 6 38 40 28.9 6.2e-07 1 No_clan
Cotton_A_01429_CDS 49 75 49 77 PF01535.20 PPR Family 3 29 31 10.5 0.61 1 CL0020
Cotton_A_01429_CDS 78 107 78 108 PF01535.20 PPR Family 1 30 31 33.2 3.4e-08 1 CL0020
Cotton_A_01429_CDS 109 138 109 139 PF01535.20 PPR Family 1 30 31 31.8 9.3e-08 1 CL0020
Cotton_A_01429_CDS 140 168 140 170 PF01535.20 PPR Family 1 29 31 35.3 7.4e-09 1 CL0020
Cotton_A_01429_CDS 171 194 171 198 PF01535.20 PPR Family 1 24 31 20.9 0.00028 1 CL0020
Cotton_A_01429_CDS 202 227 202 231 PF01535.20 PPR Family 1 26 31 18.1 0.0022 1 CL0020
Cotton_A_01429_CDS 233 257 233 263 PF01535.20 PPR Family 1 25 31 27.9 1.7e-06 1 CL0020
Cotton_A_01429_CDS 261 290 259 290 PF12854.7 PPR_1 Repeat 5 34 34 26.6 3.5e-06 1 CL0020
Cotton_A_01429_CDS 292 325 292 326 PF13041.6 PPR_2 Repeat 1 34 50 31.6 1.4e-07 1 CL0020
Cotton_A_01429_CDS 327 354 326 355 PF01535.20 PPR Family 2 29 31 27.1 3e-06 1 CL0020
Cotton_A_01429_CDS 355 402 354 403 PF13041.6 PPR_2 Repeat 2 49 50 33.5 3.6e-08 1 CL0020
Cotton_A_01429_CDS 455 503 455 504 PF13041.6 PPR_2 Repeat 1 49 50 48.3 8.2e-13 1 CL0020
Cotton_A_01429_CDS 530 554 529 556 PF01535.20 PPR Family 2 26 31 16.0 0.011 1 CL0020
Cotton_A_01429_CDS 629 753 629 753 PF14432.6 DYW_deaminase Family 1 127 127 147.0 2.5e-43 1 CL0109
Cotton_A_05706_CDS 17 186 17 187 PF03357.21 Snf7 Family 1 172 173 154.2 2.5e-45 1 CL0235
Cotton_A_21353_CDS 47 451 35 471 PF00067.22 p450 Domain 25 439 463 287.9 1.3e-85 1 No_clan
Cotton_A_08870_CDS 27 71 26 71 PF08100.11 Dimerisation Domain 2 51 51 42.7 4.2e-11 1 CL0123
Cotton_A_08870_CDS 121 330 121 331 PF00891.18 Methyltransf_2 Domain 1 209 210 180.5 2.5e-53 1 CL0063
Cotton_A_31596_CDS 181 413 178 413 PF14735.6 HAUS4 Family 4 235 235 280.8 9.6e-84 1 No_clan
Cotton_A_19018_CDS 146 201 146 201 PF12646.7 DUF3783 Domain 1 56 56 57.3 1.1e-15 1 No_clan
Cotton_A_40064_CDS 61 145 60 147 PF00564.24 PB1 Domain 2 82 84 65.0 4.3e-18 1 CL0072
Cotton_A_40064_CDS 862 1124 861 1124 PF07714.17 Pkinase_Tyr Domain 2 259 259 200.4 3.1e-59 1 CL0016
Cotton_A_23013_CDS 234 372 233 375 PF18826.1 bVLRF1 Domain 2 146 149 164.6 1.4e-48 1 CL0267
Cotton_A_23013_CDS 649 681 648 685 PF18716.1 VATC Domain 5 37 43 40.4 1.9e-10 1 CL0229
Cotton_A_27335_CDS 7 224 7 240 PF00083.24 Sugar_tr Family 1 230 452 173.7 5.9e-51 1 CL0015
Cotton_A_27335_CDS 496 719 479 719 PF00083.24 Sugar_tr Family 239 452 452 138.7 2.5e-40 1 CL0015
Cotton_A_39979_CDS 130 189 130 190 PF03106.15 WRKY Domain 1 58 59 94.6 2.9e-27 1 CL0274
Cotton_A_33952_CDS 249 381 249 382 PF00004.29 AAA Domain 1 131 132 151.7 1.4e-44 1 CL0023
Cotton_A_33952_CDS 404 447 404 448 PF17862.1 AAA_lid_3 Domain 1 44 45 51.1 8.4e-14 1 CL0671
Cotton_A_33952_CDS 462 652 461 652 PF01434.18 Peptidase_M41 Domain 2 191 191 226.2 2.9e-67 1 CL0126
Cotton_A_12488_CDS 377 506 371 507 PF00581.20 Rhodanese Domain 7 106 107 29.0 1.1e-06 1 CL0031
Cotton_A_05397_CDS 67 153 67 153 PF07911.13 DUF1677 Family 1 89 89 124.2 2e-36 1 No_clan
Cotton_A_37245_CDS 60 306 59 307 PF00520.31 Ion_trans Family 2 244 245 115.7 1.9e-33 1 CL0030
Cotton_A_37245_CDS 397 479 395 482 PF00027.29 cNMP_binding Domain 3 86 89 51.7 7e-14 1 CL0029
Cotton_A_37245_CDS 558 624 540 627 PF12796.7 Ank_2 Repeat 23 80 83 33.7 4e-08 1 CL0465
Cotton_A_37245_CDS 671 740 671 740 PF11834.8 KHA Family 1 67 67 93.1 8.2e-27 1 No_clan
Cotton_A_14063_CDS 70 231 69 231 PF04043.15 PMEI Domain 2 154 154 92.8 2.7e-26 1 No_clan
Cotton_A_14063_CDS 286 579 286 579 PF01095.19 Pectinesterase Family 1 298 298 440.9 1.5e-132 1 CL0268
Cotton_A_15976_CDS 38 489 37 497 PF01490.18 Aa_trans Family 2 405 409 185.9 9.7e-55 1 CL0062
Cotton_A_07508_CDS 16 184 11 191 PF05753.14 TRAP_beta Family 4 172 178 175.9 5e-52 1 CL0159
Cotton_A_12199_CDS 159 516 158 516 PF00862.19 Sucrose_synth Family 193 548 548 678.4 6e-204 1 CL0113
Cotton_A_12199_CDS 526 692 519 703 PF00534.20 Glycos_transf_1 Family 8 158 172 116.3 1e-33 1 CL0113
Cotton_A_09466_CDS 54 79 53 82 PF01535.20 PPR Family 2 27 31 17.9 0.0026 1 CL0020
Cotton_A_09466_CDS 127 148 124 148 PF01535.20 PPR Family 4 25 31 13.5 0.063 1 CL0020
Cotton_A_09466_CDS 156 184 156 186 PF01535.20 PPR Family 1 29 31 26.9 3.5e-06 1 CL0020
Cotton_A_09466_CDS 185 232 184 233 PF13041.6 PPR_2 Repeat 2 49 50 54.2 1.2e-14 1 CL0020
Cotton_A_09466_CDS 251 280 250 281 PF12854.7 PPR_1 Repeat 2 31 34 26.4 4.1e-06 1 CL0020
Cotton_A_09466_CDS 308 370 308 371 PF13812.6 PPR_3 Repeat 1 62 63 19.1 0.00099 1 CL0020
Cotton_A_09466_CDS 392 414 391 420 PF01535.20 PPR Family 2 24 31 13.6 0.061 1 CL0020
Cotton_A_38921_CDS 8 33 8 33 PF08513.11 LisH Domain 2 27 27 35.6 5.9e-09 1 CL0561
Cotton_A_32730_CDS 531 783 526 789 PF00069.25 Pkinase Domain 6 253 264 122.0 2.7e-35 1 CL0016
Cotton_A_32730_CDS 817 886 816 886 PF04564.15 U-box Domain 2 71 73 66.2 2.2e-18 1 CL0229
Cotton_A_19591_CDS 52 219 52 221 PF00270.29 DEAD Domain 1 174 176 167.0 3.4e-49 1 CL0023
Cotton_A_19591_CDS 256 366 255 366 PF00271.31 Helicase_C Family 2 111 111 82.8 2.1e-23 1 CL0023
Cotton_A_19591_CDS 628 689 628 690 PF08147.12 DBP10CT Domain 1 64 65 51.4 9.4e-14 1 No_clan
Cotton_A_20827_CDS 352 517 347 552 PF02902.19 Peptidase_C48 Domain 9 188 216 82.4 4e-23 1 CL0125
Cotton_A_08786_CDS 94 512 94 513 PF00026.23 Asp Family 1 314 315 336.0 2.4e-100 1 CL0129
Cotton_A_08786_CDS 324 356 323 356 PF03489.17 SapB_2 Family 2 34 34 31.7 1.2e-07 1 No_clan
Cotton_A_08786_CDS 387 423 386 423 PF05184.15 SapB_1 Domain 2 38 38 43.1 2.9e-11 1 No_clan
Cotton_A_38748_CDS 118 172 118 174 PF04844.13 Ovate Family 1 55 58 77.3 6.6e-22 1 No_clan
Cotton_A_19164_CDS 1 85 1 86 PF00139.19 Lectin_legB Domain 164 248 249 77.8 8.8e-22 1 CL0004
Cotton_A_19164_CDS 158 294 158 300 PF00069.25 Pkinase Domain 1 134 264 107.9 5.5e-31 1 CL0016
Cotton_A_11425_CDS 14 250 13 279 PF00664.23 ABC_membrane Family 2 242 274 99.0 3.6e-28 1 CL0241
Cotton_A_11425_CDS 353 499 351 499 PF00005.27 ABC_tran Domain 3 137 137 98.7 3.8e-28 1 CL0023
Cotton_A_30240_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 52.9 3.1e-14 1 CL0123
Cotton_A_30240_CDS 67 111 67 112 PF00249.31 Myb_DNA-binding Domain 1 45 46 53.8 1.6e-14 1 CL0123
Cotton_A_25112_CDS 25 344 24 344 PF03662.14 Glyco_hydro_79n Domain 2 318 318 499.0 4.2e-150 1 CL0058
Cotton_A_22011_CDS 15 109 11 109 PF14368.6 LTP_2 Family 4 97 97 60.4 1.4e-16 1 CL0482
Cotton_A_24818_CDS 3 69 1 72 PF13456.6 RVT_3 Domain 54 121 124 46.0 4e-12 1 CL0219
Cotton_A_11078_CDS 100 430 100 431 PF00225.23 Kinesin Domain 1 332 333 367.6 5e-110 1 CL0023
Cotton_A_14503_CDS 31 65 31 65 PF06376.12 AGP Family 1 36 36 62.4 2.6e-17 1 No_clan
Cotton_A_18285_CDS 28 446 27 446 PF00450.22 Peptidase_S10 Domain 2 419 419 464.6 4.1e-139 1 CL0028
Cotton_A_00772_CDS 88 152 70 165 PF02362.21 B3 Family 17 85 101 37.4 1.7e-09 1 CL0405
Cotton_A_22868_CDS 46 103 43 104 PF02560.14 Cyanate_lyase Domain 12 68 69 59.7 1.9e-16 1 No_clan
Cotton_A_03173_CDS 5 115 3 115 PF04145.15 Ctr Family 3 148 148 63.9 2.4e-17 1 No_clan
Cotton_A_23124_CDS 34 98 8 98 PF02519.14 Auxin_inducible Family 29 90 90 29.8 5e-07 1 No_clan
Cotton_A_33543_CDS 160 223 138 224 PF00118.24 Cpn60_TCP1 Family 424 490 491 43.1 2.2e-11 1 No_clan
Cotton_A_38864_CDS 202 253 202 253 PF00249.31 Myb_DNA-binding Domain 1 46 46 27.4 2.9e-06 1 CL0123
Cotton_A_16920_CDS 37 147 37 148 PF13426.7 PAS_9 Domain 1 99 104 56.1 3.7e-15 1 CL0183
Cotton_A_16920_CDS 206 244 201 245 PF12937.7 F-box-like Domain 8 47 48 31.5 1.2e-07 1 CL0271
Cotton_A_16920_CDS 294 344 293 344 PF13418.6 Kelch_4 Repeat 2 49 49 43.6 2.1e-11 1 CL0186
Cotton_A_16920_CDS 358 405 356 406 PF13415.6 Kelch_3 Domain 3 48 49 41.7 9.9e-11 1 CL0186
Cotton_A_16920_CDS 451 502 451 502 PF07646.15 Kelch_2 Repeat 1 49 49 24.5 1.8e-05 1 CL0186
Cotton_A_16920_CDS 518 565 516 565 PF07646.15 Kelch_2 Repeat 2 49 49 22.8 6.4e-05 1 CL0186
Cotton_A_21415_CDS 36 96 18 99 PF15511.6 CENP-T_C Domain 19 79 108 34.4 1.8e-08 1 CL0012
Cotton_A_16484_CDS 51 213 51 214 PF14306.6 PUA_2 Domain 1 158 159 156.2 5.3e-46 1 CL0178
Cotton_A_16484_CDS 223 445 222 445 PF01747.17 ATP-sulfurylase Domain 2 212 212 217.2 1.7e-64 1 CL0039
Cotton_A_37510_CDS 54 285 53 285 PF03087.14 DUF241 Family 2 234 234 253.6 2.1e-75 1 CL0133
Cotton_A_29820_CDS 35 307 35 307 PF01459.22 Porin_3 Family 1 270 270 262.0 6.1e-78 1 CL0193
Cotton_A_01223_CDS 22 188 22 190 PF00270.29 DEAD Domain 1 173 176 130.3 6.2e-38 1 CL0023
Cotton_A_01223_CDS 220 327 218 327 PF00271.31 Helicase_C Family 3 111 111 94.2 5.9e-27 1 CL0023
Cotton_A_01223_CDS 402 634 400 645 PF00139.19 Lectin_legB Domain 3 236 249 150.4 6.4e-44 1 CL0004
Cotton_A_01223_CDS 718 979 717 982 PF00069.25 Pkinase Domain 2 260 264 161.4 2.7e-47 1 CL0016
Cotton_A_29408_CDS 110 302 109 302 PF00926.19 DHBP_synthase Family 2 192 192 290.6 4.3e-87 1 No_clan
Cotton_A_29408_CDS 315 478 311 478 PF00925.20 GTP_cyclohydro2 Family 5 163 163 234.8 3.5e-70 1 No_clan
Cotton_A_39208_CDS 52 112 50 112 PF05498.11 RALF Family 3 65 65 89.5 2.1e-25 1 No_clan
Cotton_A_12256_CDS 93 336 84 336 PF07714.17 Pkinase_Tyr Domain 12 259 259 94.6 5.7e-27 1 CL0016
Cotton_A_08554_CDS 1 132 1 132 PF00125.24 Histone Domain 1 131 131 181.1 1.1e-53 1 CL0012
Cotton_A_13821_CDS 711 932 671 974 PF00176.23 SNF2_N Family 45 250 350 56.6 1.7e-15 1 CL0023
Cotton_A_13821_CDS 1076 1187 1070 1188 PF00271.31 Helicase_C Family 7 110 111 52.6 5.1e-14 1 CL0023
Cotton_A_00437_CDS 238 323 237 325 PF00855.17 PWWP Domain 2 94 96 60.8 1.2e-16 1 CL0049
Cotton_A_13125_CDS 52 507 52 507 PF11744.8 ALMT Family 1 469 469 578.5 1.1e-173 1 CL0307
Cotton_A_21964_CDS 57 182 57 190 PF03188.16 Cytochrom_B561 Family 1 132 137 43.0 4.7e-11 1 CL0328
Cotton_A_30476_CDS 84 178 27 179 PF06364.12 DUF1068 Family 73 167 168 92.5 2.5e-26 1 No_clan
Cotton_A_04959_CDS 27 46 27 53 PF00786.28 PBD Domain 1 20 59 28.3 1.6e-06 1 No_clan
Cotton_A_37296_CDS 33 71 32 72 PF08263.12 LRRNT_2 Family 2 40 41 37.6 2e-09 1 No_clan
Cotton_A_37296_CDS 296 330 293 332 PF13855.6 LRR_8 Repeat 25 59 61 27.3 2.3e-06 1 CL0022
Cotton_A_37296_CDS 641 907 638 907 PF07714.17 Pkinase_Tyr Domain 4 259 259 162.4 1.2e-47 1 CL0016
Cotton_A_13398_CDS 99 175 85 189 PF00085.20 Thioredoxin Domain 15 90 103 51.4 8.2e-14 1 CL0172
Cotton_A_29276_CDS 28 143 15 144 PF00828.19 Ribosomal_L27A Family 3 127 128 83.5 2e-23 1 CL0588
Cotton_A_40480_CDS 26 70 11 71 PF05498.11 RALF Family 16 64 65 30.5 5.3e-07 1 No_clan
Cotton_A_21544_CDS 61 922 61 923 PF05911.11 FPP Coiled-coil 1 866 867 773.1 3.9e-232 1 No_clan
Cotton_A_28820_CDS 14 265 4 268 PF00067.22 p450 Domain 87 335 463 142.1 2.2e-41 1 No_clan
Cotton_A_28820_CDS 267 360 264 363 PF00067.22 p450 Domain 370 460 463 69.0 3.3e-19 1 No_clan
Cotton_A_35771_CDS 32 145 31 147 PF07732.15 Cu-oxidase_3 Domain 2 117 119 133.2 4.4e-39 1 CL0026
Cotton_A_35771_CDS 158 309 157 309 PF00394.22 Cu-oxidase Domain 2 159 159 125.3 2.3e-36 1 CL0026
Cotton_A_35771_CDS 411 546 410 548 PF07731.14 Cu-oxidase_2 Domain 2 135 137 126.2 7.1e-37 1 CL0026
Cotton_A_26579_CDS 34 576 33 578 PF03321.13 GH3 Family 2 524 527 691.7 7.2e-208 1 CL0378
Cotton_A_05454_CDS 14 144 14 152 PF04857.20 CAF1 Family 1 128 319 30.1 2.7e-07 1 CL0219
Cotton_A_05454_CDS 163 220 146 248 PF04857.20 CAF1 Family 209 272 319 26.0 4.8e-06 1 CL0219
Cotton_A_09523_CDS 6 62 1 62 PF11960.8 DUF3474 Family 78 135 135 99.0 2.5e-28 1 No_clan
Cotton_A_09523_CDS 70 323 32 329 PF00487.24 FA_desaturase Domain 3 246 254 111.2 7.2e-32 1 No_clan
Cotton_A_35571_CDS 2 197 2 197 PF12481.8 DUF3700 Domain 1 198 228 305.7 1.7e-91 1 CL0052
Cotton_A_04190_CDS 12 99 9 138 PF18052.1 Rx_N Domain 4 91 93 74.1 8.4e-21 1 No_clan
Cotton_A_04190_CDS 192 417 172 418 PF00931.22 NB-ARC Domain 16 251 252 138.2 2.7e-40 1 CL0023
Cotton_A_20940_CDS 58 131 50 132 PF01388.21 ARID Domain 10 89 90 45.4 1e-11 1 CL0123
Cotton_A_27232_CDS 275 327 273 327 PF08590.10 DUF1771 Domain 12 64 64 35.8 7.7e-09 1 No_clan
Cotton_A_27232_CDS 335 433 335 443 PF01713.21 Smr Family 1 56 80 31.0 2.5e-07 1 No_clan
Cotton_A_14361_CDS 90 186 90 186 PF04900.12 Fcf1 Family 1 99 99 140.1 2.5e-41 1 CL0280
Cotton_A_18890_CDS 32 121 32 121 PF07911.13 DUF1677 Family 1 89 89 130.2 2.7e-38 1 No_clan
Cotton_A_36730_CDS 31 143 30 143 PF04398.12 DUF538 Family 2 112 112 105.9 1.5e-30 1 No_clan
Cotton_A_38786_CDS 6 74 6 75 PF00076.22 RRM_1 Domain 1 69 70 49.0 4e-13 1 CL0221
Cotton_A_30390_CDS 19 94 19 122 PF14226.6 DIOX_N Family 1 80 118 46.9 4.1e-12 1 CL0029
Cotton_A_30390_CDS 170 277 169 279 PF03171.20 2OG-FeII_Oxy Domain 2 99 101 87.1 9e-25 1 CL0029
Cotton_A_20511_CDS 48 88 46 94 PF00170.21 bZIP_1 Family 5 45 64 29.3 7e-07 1 CL0018
Cotton_A_20511_CDS 130 205 130 206 PF14144.6 DOG1 Family 1 76 77 111.4 1.8e-32 1 No_clan
Cotton_A_03100_CDS 139 316 139 319 PF01758.16 SBF Family 1 192 195 168.2 1.7e-49 1 CL0064
Cotton_A_34628_CDS 11 206 9 228 PF00378.20 ECH_1 Domain 3 199 251 139.0 1.6e-40 1 CL0127
Cotton_A_34628_CDS 307 484 307 486 PF02737.18 3HCDH_N Domain 1 178 180 180.1 3.8e-53 1 CL0063
Cotton_A_34628_CDS 488 579 488 581 PF00725.22 3HCDH Domain 1 95 97 63.2 2.7e-17 1 CL0106
Cotton_A_29106_CDS 364 690 351 693 PF00176.23 SNF2_N Family 50 347 350 154.5 3e-45 1 CL0023
Cotton_A_29106_CDS 743 855 742 855 PF00271.31 Helicase_C Family 2 111 111 66.3 2.7e-18 1 CL0023
Cotton_A_25001_CDS 156 674 154 674 PF00330.20 Aconitase Family 1 461 461 594.6 1.5e-178 1 No_clan
Cotton_A_25001_CDS 803 930 802 932 PF00694.19 Aconitase_C Domain 2 129 131 146.2 6.6e-43 1 CL0364
Cotton_A_39192_CDS 220 522 218 522 PF03595.17 SLAC1 Family 3 324 324 165.5 1.7e-48 1 No_clan
Cotton_A_02037_CDS 1 403 1 406 PF00421.19 PSII Family 37 504 507 433.4 1.1e-129 1 No_clan
Cotton_A_06933_CDS 1 242 1 242 PF14290.6 DUF4370 Family 1 237 237 390.0 4.5e-117 1 No_clan
Cotton_A_35932_CDS 30 152 30 155 PF01477.23 PLAT Domain 1 114 117 52.9 4.8e-14 1 CL0321
Cotton_A_19847_CDS 61 154 54 155 PF06749.12 DUF1218 Family 3 90 91 45.7 7.2e-12 1 No_clan
Cotton_A_00975_CDS 1 196 1 196 PF07231.12 Hs1pro-1_N Family 1 185 185 275.3 2.3e-82 1 No_clan
Cotton_A_00975_CDS 199 456 199 457 PF07014.12 Hs1pro-1_C Family 1 259 260 455.2 6.3e-137 1 CL0380
Cotton_A_02396_CDS 30 127 23 129 PF13947.6 GUB_WAK_bind Domain 4 104 106 30.6 4.3e-07 1 No_clan
Cotton_A_02396_CDS 154 225 140 229 PF14380.6 WAK_assoc Domain 22 100 104 26.0 1.1e-05 1 No_clan
Cotton_A_26266_CDS 253 362 252 363 PF02338.19 OTU Family 3 127 127 61.4 1.1e-16 1 CL0125
Cotton_A_30683_CDS 35 114 10 114 PF12796.7 Ank_2 Repeat 15 83 83 43.6 3.4e-11 1 CL0465
Cotton_A_30683_CDS 142 189 142 189 PF00415.18 RCC1 Repeat 3 50 50 31.3 2.3e-07 1 CL0186
Cotton_A_03453_CDS 28 215 27 217 PF00909.21 Ammonium_transp Family 2 170 399 88.6 3.3e-25 1 No_clan
Cotton_A_03453_CDS 243 475 240 475 PF00909.21 Ammonium_transp Family 171 399 399 162.6 1.1e-47 1 No_clan
Cotton_A_23674_CDS 28 65 26 66 PF08263.12 LRRNT_2 Family 4 40 41 35.1 1.2e-08 1 No_clan
Cotton_A_23674_CDS 146 166 146 168 PF00560.33 LRR_1 Repeat 1 21 23 13.0 0.12 1 CL0022
Cotton_A_23674_CDS 214 228 213 229 PF13516.6 LRR_6 Repeat 3 17 24 9.4 1.2 1 CL0022
Cotton_A_23674_CDS 238 252 236 254 PF13516.6 LRR_6 Repeat 3 17 24 11.4 0.27 1 CL0022
Cotton_A_24511_CDS 201 411 193 412 PF03181.15 BURP Family 7 214 215 204.8 1.1e-60 1 No_clan
Cotton_A_08407_CDS 106 388 106 390 PF14576.6 SEO_N Family 1 284 287 416.4 4.9e-125 1 No_clan
Cotton_A_36552_CDS 21 198 21 198 PF14215.6 bHLH-MYC_N Family 1 175 175 168.4 1.8e-49 1 CL0161
Cotton_A_36552_CDS 291 336 289 337 PF00010.26 HLH Domain 4 52 53 42.4 4.9e-11 1 No_clan
Cotton_A_14333_CDS 6 335 1 336 PF03140.15 DUF247 Family 70 396 397 230.1 5.1e-68 1 No_clan
Cotton_A_17426_CDS 1 29 1 29 PF00444.18 Ribosomal_L36 Domain 10 38 38 55.7 4e-15 1 No_clan
Cotton_A_15832_CDS 78 355 78 356 PF03644.13 Glyco_hydro_85 Family 1 301 302 306.8 1.6e-91 1 CL0058
Cotton_A_33452_CDS 378 646 375 647 PF07714.17 Pkinase_Tyr Domain 4 258 259 160.4 4.9e-47 1 CL0016
Cotton_A_32238_CDS 135 164 130 164 PF12142.8 PPO1_DWL Domain 23 52 52 29.2 5.7e-07 1 No_clan
Cotton_A_32238_CDS 196 297 196 297 PF12143.8 PPO1_KFDV Domain 1 93 130 75.5 4e-21 1 CL0122
Cotton_A_28677_CDS 113 205 113 205 PF04749.17 PLAC8 Family 1 99 99 70.5 1.8e-19 1 No_clan
Cotton_A_18501_CDS 451 485 445 485 PF00400.32 WD40 Repeat 7 38 38 18.8 0.0022 1 CL0186
Cotton_A_18501_CDS 914 947 909 947 PF00400.32 WD40 Repeat 6 38 38 19.0 0.0019 1 CL0186
Cotton_A_24744_CDS 61 165 61 177 PF14226.6 DIOX_N Family 1 104 118 61.5 1.3e-16 1 CL0029
Cotton_A_24744_CDS 215 309 212 311 PF03171.20 2OG-FeII_Oxy Domain 4 99 101 82.6 2.4e-23 1 CL0029
Cotton_A_33520_CDS 116 145 115 145 PF01535.20 PPR Family 2 31 31 24.4 2.1e-05 1 CL0020
Cotton_A_33520_CDS 147 196 147 196 PF13041.6 PPR_2 Repeat 1 50 50 50.8 1.3e-13 1 CL0020
Cotton_A_33520_CDS 217 265 217 265 PF13041.6 PPR_2 Repeat 1 49 50 69.3 2.3e-19 1 CL0020
Cotton_A_33520_CDS 284 313 283 316 PF12854.7 PPR_1 Repeat 2 31 34 34.3 1.4e-08 1 CL0020
Cotton_A_33520_CDS 323 370 323 371 PF13041.6 PPR_2 Repeat 2 49 50 59.3 3.1e-16 1 CL0020
Cotton_A_33520_CDS 392 439 392 441 PF13041.6 PPR_2 Repeat 1 48 50 55.0 6.8e-15 1 CL0020
Cotton_A_33520_CDS 462 491 458 491 PF12854.7 PPR_1 Repeat 5 34 34 28.2 1.1e-06 1 CL0020
Cotton_A_33520_CDS 498 546 497 546 PF13041.6 PPR_2 Repeat 2 50 50 61.9 4.9e-17 1 CL0020
Cotton_A_33520_CDS 567 612 567 614 PF13041.6 PPR_2 Repeat 1 46 50 33.9 2.6e-08 1 CL0020
Cotton_A_13349_CDS 235 301 234 302 PF04195.12 Transposase_28 Family 2 69 70 60.2 1.7e-16 1 No_clan
Cotton_A_38249_CDS 118 379 118 382 PF00218.21 IGPS Domain 1 251 254 266.2 2.2e-79 1 CL0036
Cotton_A_23312_CDS 240 266 232 271 PF00400.32 WD40 Repeat 9 34 38 13.8 0.082 1 CL0186
Cotton_A_23312_CDS 284 314 275 315 PF00400.32 WD40 Repeat 9 37 38 19.3 0.0016 1 CL0186
Cotton_A_02552_CDS 61 128 60 130 PF03735.14 ENT Family 2 68 70 98.9 1.2e-28 1 No_clan
Cotton_A_02267_CDS 177 328 177 328 PF00005.27 ABC_tran Domain 1 137 137 96.8 1.5e-27 1 CL0023
Cotton_A_02267_CDS 495 704 495 704 PF01061.24 ABC2_membrane Family 1 210 210 139.2 1.2e-40 1 CL0181
Cotton_A_14422_CDS 215 270 186 271 PF12894.7 ANAPC4_WD40 Repeat 35 91 92 24.0 3.4e-05 1 CL0186
Cotton_A_14422_CDS 296 329 293 329 PF00400.32 WD40 Repeat 6 38 38 24.9 2.6e-05 1 CL0186
Cotton_A_14422_CDS 334 374 333 374 PF00400.32 WD40 Repeat 2 38 38 15.6 0.022 1 CL0186
Cotton_A_14422_CDS 423 459 421 459 PF00400.32 WD40 Repeat 3 38 38 23.8 5.5e-05 1 CL0186
Cotton_A_36434_CDS 26 269 25 278 PF00139.19 Lectin_legB Domain 2 238 249 230.2 2.7e-68 1 CL0004
Cotton_A_36434_CDS 357 622 356 624 PF00069.25 Pkinase Domain 2 259 264 153.5 6.6e-45 1 CL0016
Cotton_A_06588_CDS 9 139 8 141 PF12047.8 DNMT1-RFD Domain 2 142 144 29.6 6.1e-07 1 No_clan
Cotton_A_17704_CDS 15 63 14 63 PF13041.6 PPR_2 Repeat 2 50 50 45.9 4.9e-12 1 CL0020
Cotton_A_17704_CDS 116 163 115 164 PF13041.6 PPR_2 Repeat 2 49 50 45.3 7.4e-12 1 CL0020
Cotton_A_17704_CDS 217 263 216 265 PF13041.6 PPR_2 Repeat 2 48 50 31.2 1.8e-07 1 CL0020
Cotton_A_17704_CDS 390 514 390 514 PF14432.6 DYW_deaminase Family 1 127 127 135.0 1.3e-39 1 CL0109
Cotton_A_03914_CDS 34 89 32 90 PF02701.15 zf-Dof Family 3 58 59 112.1 9.9e-33 1 No_clan
Cotton_A_22316_CDS 43 185 41 185 PF03208.19 PRA1 Family 3 143 143 159.8 3e-47 1 No_clan
Cotton_A_00007_CDS 12 273 11 325 PF01593.24 Amino_oxidase Domain 3 266 452 59.5 3.5e-16 1 CL0063
Cotton_A_00007_CDS 580 847 577 852 PF02353.20 CMAS Family 4 268 273 253.8 1.7e-75 1 CL0063
Cotton_A_17556_CDS 165 222 165 222 PF03106.15 WRKY Domain 1 59 59 91.1 3.8e-26 1 CL0274
Cotton_A_02015_CDS 14 58 13 61 PF00249.31 Myb_DNA-binding Domain 2 42 46 31.3 1.7e-07 1 CL0123
Cotton_A_40508_CDS 190 248 190 248 PF03106.15 WRKY Domain 1 59 59 86.3 1.2e-24 1 CL0274
Cotton_A_00562_CDS 88 206 88 206 PF01641.18 SelR Family 1 121 121 152.6 4.5e-45 1 CL0080
Cotton_A_37863_CDS 22 86 22 86 PF02319.20 E2F_TDP Domain 1 71 71 71.4 4.9e-20 1 CL0123
Cotton_A_37863_CDS 160 238 159 238 PF02319.20 E2F_TDP Domain 2 71 71 68.4 4.2e-19 1 CL0123
Cotton_A_08527_CDS 162 459 161 472 PF03514.14 GRAS Family 2 288 374 214.3 2.4e-63 1 CL0063
Cotton_A_14723_CDS 31 65 31 66 PF07897.11 EAR Family 1 35 36 67.9 4.2e-19 1 No_clan
Cotton_A_14723_CDS 88 183 88 183 PF16136.5 NINJA_B Family 1 111 111 67.1 1.6e-18 1 No_clan
Cotton_A_14723_CDS 254 318 250 318 PF16135.5 Jas Family 6 76 76 60.0 1.9e-16 1 No_clan
Cotton_A_20481_CDS 34 335 33 336 PF00657.22 Lipase_GDSL Family 2 199 200 58.9 6.4e-16 1 CL0264
Cotton_A_32285_CDS 198 224 197 224 PF14570.6 zf-RING_4 Domain 21 48 48 28.7 8.1e-07 1 CL0229
Cotton_A_32285_CDS 410 759 410 770 PF03552.14 Cellulose_synt Family 1 302 722 574.1 4.8e-172 1 CL0110
Cotton_A_32285_CDS 773 1145 758 1145 PF03552.14 Cellulose_synt Family 355 709 722 609.7 8.4e-183 1 CL0110
Cotton_A_24579_CDS 2 117 1 117 PF03140.15 DUF247 Family 280 397 397 100.4 1.2e-28 1 No_clan
Cotton_A_21193_CDS 1 81 1 83 PF09598.10 Stm1_N Family 1 64 65 56.7 3.3e-15 1 No_clan
Cotton_A_21193_CDS 152 259 152 259 PF04774.15 HABP4_PAI-RBP1 Family 1 116 116 99.0 2.9e-28 1 No_clan
Cotton_A_01476_CDS 163 231 161 231 PF08234.12 Spindle_Spc25 Family 3 73 73 74.5 5.6e-21 1 No_clan
Cotton_A_02162_CDS 22 68 12 74 PF16725.5 Nucleolin_bd Domain 12 63 70 30.5 2.1e-07 1 No_clan
Cotton_A_02162_CDS 289 434 289 436 PF00004.29 AAA Domain 1 130 132 137.1 4.5e-40 1 CL0023
Cotton_A_02162_CDS 459 521 458 534 PF17862.1 AAA_lid_3 Domain 2 34 45 40.4 1.9e-10 1 CL0671
Cotton_A_02162_CDS 595 723 594 724 PF00004.29 AAA Domain 2 131 132 142.1 1.3e-41 1 CL0023
Cotton_A_02162_CDS 746 783 746 801 PF17862.1 AAA_lid_3 Domain 1 36 45 32.0 7.6e-08 1 CL0671
Cotton_A_41171_CDS 35 143 31 147 PF07732.15 Cu-oxidase_3 Domain 5 114 119 133.2 4.2e-39 1 CL0026
Cotton_A_41171_CDS 161 322 158 323 PF00394.22 Cu-oxidase Domain 5 158 159 153.2 6e-45 1 CL0026
Cotton_A_41171_CDS 428 549 382 552 PF07731.14 Cu-oxidase_2 Domain 23 134 137 121.0 2.8e-35 1 CL0026
Cotton_A_24000_CDS 16 89 15 98 PF00300.22 His_Phos_1 Domain 2 68 194 32.3 7.4e-08 1 CL0071
Cotton_A_08852_CDS 2 418 1 418 PF00854.21 PTR2 Family 16 395 395 439.1 1.3e-131 1 CL0015
Cotton_A_31348_CDS 1 124 1 137 PF00067.22 p450 Domain 326 448 463 90.6 9.2e-26 1 No_clan
Cotton_A_00465_CDS 75 549 75 558 PF00221.19 Lyase_aromatic Family 1 456 464 514.8 1.9e-154 1 No_clan
Cotton_A_08311_CDS 93 145 92 145 PF14416.6 PMR5N Domain 2 53 53 80.3 9.2e-23 1 No_clan
Cotton_A_08311_CDS 146 436 146 436 PF13839.6 PC-Esterase Family 1 283 283 332.5 2.7e-99 1 CL0264
Cotton_A_28153_CDS 76 201 76 216 PF00781.24 DAGK_cat Family 1 113 126 86.1 1.4e-24 1 CL0240
Cotton_A_28153_CDS 298 472 297 472 PF00609.19 DAGK_acc Family 2 160 160 123.3 1.1e-35 1 No_clan
Cotton_A_13035_CDS 2 77 1 77 PF00854.21 PTR2 Family 321 395 395 63.3 1.8e-17 1 CL0015
Cotton_A_09632_CDS 112 429 109 437 PF00295.17 Glyco_hydro_28 Domain 5 307 325 291.2 8.5e-87 1 CL0268
Cotton_A_31263_CDS 109 166 108 166 PF03106.15 WRKY Domain 2 59 59 89.5 1.2e-25 1 CL0274
Cotton_A_07719_CDS 15 177 14 178 PF04690.13 YABBY Family 2 161 162 227.6 1.2e-67 1 CL0114
Cotton_A_04622_CDS 122 429 121 431 PF00365.20 PFK Domain 2 282 284 195.1 1.5e-57 1 CL0240
Cotton_A_30320_CDS 59 135 59 135 PF02597.20 ThiS Family 1 77 77 60.7 1.6e-16 1 CL0072
Cotton_A_24643_CDS 1 132 1 132 PF00125.24 Histone Domain 1 131 131 181.1 1.1e-53 1 CL0012
Cotton_A_22374_CDS 75 104 74 104 PF01535.20 PPR Family 2 31 31 9.9 0.89 1 CL0020
Cotton_A_22374_CDS 211 254 210 258 PF13041.6 PPR_2 Repeat 2 45 50 40.6 2.1e-10 1 CL0020
Cotton_A_22374_CDS 312 358 311 359 PF13041.6 PPR_2 Repeat 2 48 50 32.5 7e-08 1 CL0020
Cotton_A_22374_CDS 387 411 384 414 PF01535.20 PPR Family 4 28 31 17.0 0.0051 1 CL0020
Cotton_A_22374_CDS 413 460 412 461 PF13041.6 PPR_2 Repeat 2 49 50 31.8 1.2e-07 1 CL0020
Cotton_A_22374_CDS 488 511 486 513 PF01535.20 PPR Family 3 26 31 11.2 0.34 1 CL0020
Cotton_A_22374_CDS 586 710 586 710 PF14432.6 DYW_deaminase Family 1 127 127 146.3 4.1e-43 1 CL0109
Cotton_A_39030_CDS 128 151 125 154 PF01535.20 PPR Family 5 28 31 14.3 0.037 1 CL0020
Cotton_A_39030_CDS 165 190 161 190 PF01535.20 PPR Family 6 31 31 14.5 0.032 1 CL0020
Cotton_A_07295_CDS 56 147 56 147 PF16656.5 Pur_ac_phosph_N Domain 1 94 94 80.5 9.9e-23 1 CL0159
Cotton_A_07295_CDS 158 355 157 355 PF00149.28 Metallophos Domain 2 204 204 79.2 5.8e-22 1 CL0163
Cotton_A_07295_CDS 381 441 381 444 PF14008.6 Metallophos_C Domain 1 60 63 65.5 6e-18 1 No_clan
Cotton_A_07754_CDS 231 511 229 512 PF15787.5 DUF4704 Family 4 278 279 160.5 4.8e-47 1 No_clan
Cotton_A_07754_CDS 1623 1721 1622 1721 PF14844.6 PH_BEACH Domain 2 100 100 94.5 3.4e-27 1 CL0266
Cotton_A_07754_CDS 1749 2025 1749 2025 PF02138.18 Beach Family 1 276 276 402.4 9.3e-121 1 No_clan
Cotton_A_07754_CDS 2184 2213 2177 2214 PF00400.32 WD40 Repeat 9 37 38 30.1 5.8e-07 1 CL0186
Cotton_A_34756_CDS 5 76 3 76 PF02798.20 GST_N Domain 3 76 76 57.0 1.8e-15 1 CL0172
Cotton_A_34756_CDS 164 201 157 245 PF00848.19 Ring_hydroxyl_A Domain 7 43 214 34.7 1.7e-08 1 CL0209
Cotton_A_29467_CDS 29 130 26 131 PF13947.6 GUB_WAK_bind Domain 4 105 106 60.0 3.1e-16 1 No_clan
Cotton_A_12407_CDS 20 73 20 73 PF00281.19 Ribosomal_L5 Domain 1 57 57 72.5 2.6e-20 1 CL0652
Cotton_A_12407_CDS 77 175 77 175 PF00673.21 Ribosomal_L5_C Domain 1 94 94 72.5 2.4e-20 1 No_clan
Cotton_A_34513_CDS 41 79 36 80 PF01246.20 Ribosomal_L24e Domain 27 65 66 63.6 1.5e-17 1 CL0175
Cotton_A_22855_CDS 65 131 65 132 PF08606.11 Prp19 Domain 1 67 68 109.6 5.5e-32 1 No_clan
Cotton_A_22855_CDS 252 288 251 289 PF00400.32 WD40 Repeat 2 37 38 31.9 1.6e-07 1 CL0186
Cotton_A_22855_CDS 384 419 382 419 PF00400.32 WD40 Repeat 3 38 38 18.9 0.002 1 CL0186
Cotton_A_22855_CDS 470 508 469 508 PF00400.32 WD40 Repeat 2 37 38 18.7 0.0023 1 CL0186
Cotton_A_26149_CDS 143 169 140 169 PF01535.20 PPR Family 5 31 31 10.4 0.62 1 CL0020
Cotton_A_26149_CDS 210 239 209 239 PF01535.20 PPR Family 2 31 31 25.9 7e-06 1 CL0020
Cotton_A_26149_CDS 245 274 244 274 PF01535.20 PPR Family 2 31 31 14.6 0.03 1 CL0020
Cotton_A_26149_CDS 276 325 276 325 PF13041.6 PPR_2 Repeat 1 50 50 47.3 1.8e-12 1 CL0020
Cotton_A_26149_CDS 347 396 347 396 PF13041.6 PPR_2 Repeat 1 50 50 63.3 1.7e-17 1 CL0020
Cotton_A_26149_CDS 417 466 417 466 PF13041.6 PPR_2 Repeat 1 50 50 45.1 8.3e-12 1 CL0020
Cotton_A_26149_CDS 484 514 483 515 PF12854.7 PPR_1 Repeat 2 32 34 30.3 2.5e-07 1 CL0020
Cotton_A_26149_CDS 526 571 525 571 PF13041.6 PPR_2 Repeat 5 50 50 54.8 7.9e-15 1 CL0020
Cotton_A_31867_CDS 166 311 163 325 PF00931.22 NB-ARC Domain 4 155 252 98.4 3.6e-28 1 CL0023
Cotton_A_17017_CDS 39 115 39 115 PF03134.19 TB2_DP1_HVA22 Family 1 77 77 100.2 4.6e-29 1 No_clan
Cotton_A_12874_CDS 402 440 402 440 PF04810.15 zf-Sec23_Sec24 Domain 1 39 39 51.7 6.7e-14 1 No_clan
Cotton_A_12874_CDS 477 721 477 721 PF04811.15 Sec23_trunk Domain 1 243 243 232.7 4.6e-69 1 CL0128
Cotton_A_12874_CDS 726 809 726 810 PF08033.12 Sec23_BS Domain 1 95 96 71.1 1e-19 1 No_clan
Cotton_A_12874_CDS 821 918 821 921 PF04815.15 Sec23_helical Domain 1 100 103 62.6 2.4e-17 1 No_clan
Cotton_A_12874_CDS 944 1012 942 1016 PF00626.22 Gelsolin Domain 3 72 76 27.0 3.1e-06 1 CL0092
Cotton_A_33254_CDS 113 206 105 207 PF03754.13 DUF313 Family 11 112 113 67.4 1.2e-18 1 CL0405
Cotton_A_24894_CDS 116 368 116 369 PF07859.13 Abhydrolase_3 Domain 1 210 211 214.0 2.1e-63 1 CL0028
Cotton_A_20159_CDS 104 148 104 148 PF13639.6 zf-RING_2 Domain 1 44 44 44.7 1.2e-11 1 CL0229
Cotton_A_20684_CDS 271 564 271 565 PF01501.20 Glyco_transf_8 Family 1 255 256 232.1 7.5e-69 1 CL0110
Cotton_A_16119_CDS 6 81 3 82 PF10961.8 SelK_SelG Family 7 84 86 75.5 3.8e-21 1 No_clan
Cotton_A_18818_CDS 16 215 14 224 PF00378.20 ECH_1 Domain 4 201 251 133.4 8.2e-39 1 CL0127
Cotton_A_18818_CDS 314 492 314 493 PF02737.18 3HCDH_N Domain 1 179 180 203.4 2.6e-60 1 CL0063
Cotton_A_18818_CDS 495 588 495 588 PF00725.22 3HCDH Domain 1 97 97 72.3 3.9e-20 1 CL0106
Cotton_A_33669_CDS 76 115 75 117 PF03790.13 KNOX1 Family 2 41 43 75.2 2.4e-21 1 No_clan
Cotton_A_33669_CDS 128 174 127 174 PF03791.13 KNOX2 Family 2 48 48 85.8 9.7e-25 1 No_clan
Cotton_A_33669_CDS 252 291 252 291 PF05920.11 Homeobox_KN Family 1 40 40 58.7 3.7e-16 1 CL0123
Cotton_A_09789_CDS 79 135 77 138 PF00170.21 bZIP_1 Family 5 61 64 36.1 5.2e-09 1 CL0018
Cotton_A_00144_CDS 183 267 183 268 PF00439.25 Bromodomain Domain 1 83 84 80.3 7.9e-23 1 No_clan
Cotton_A_00144_CDS 385 447 385 448 PF17035.5 BET Domain 1 63 64 85.1 2.6e-24 1 CL0665
Cotton_A_09637_CDS 87 134 87 135 PF13041.6 PPR_2 Repeat 1 48 50 32.9 5.6e-08 1 CL0020
Cotton_A_09637_CDS 189 216 187 217 PF12854.7 PPR_1 Repeat 6 33 34 29.8 3.5e-07 1 CL0020
Cotton_A_09637_CDS 220 266 219 268 PF13041.6 PPR_2 Repeat 2 48 50 37.6 1.8e-09 1 CL0020
Cotton_A_09637_CDS 295 315 294 322 PF01535.20 PPR Family 4 24 31 17.9 0.0025 1 CL0020
Cotton_A_09637_CDS 321 368 320 369 PF13041.6 PPR_2 Repeat 2 49 50 43.5 2.6e-11 1 CL0020
Cotton_A_09637_CDS 395 419 394 421 PF01535.20 PPR Family 2 26 31 18.4 0.0019 1 CL0020
Cotton_A_09637_CDS 494 620 494 620 PF14432.6 DYW_deaminase Family 1 127 127 123.9 3.4e-36 1 CL0109
Cotton_A_10146_CDS 198 269 198 270 PF04564.15 U-box Domain 1 72 73 73.7 9.7e-21 1 CL0229
Cotton_A_10146_CDS 338 375 336 376 PF00514.23 Arm Repeat 3 40 41 41.0 1.3e-10 1 CL0020
Cotton_A_16029_CDS 3 109 2 119 PF12624.7 Chorein_N Family 2 109 116 104.9 2.6e-30 1 No_clan
Cotton_A_16029_CDS 133 374 133 375 PF16908.5 VPS13 Family 1 235 236 231.1 1.5e-68 1 No_clan
Cotton_A_16029_CDS 562 782 559 785 PF16910.5 VPS13_mid_rpt Repeat 4 230 235 117.7 5.3e-34 1 No_clan
Cotton_A_16029_CDS 804 913 802 914 PF00169.29 PH Domain 3 104 105 27.8 2.9e-06 1 CL0266
Cotton_A_16029_CDS 1995 2140 1989 2153 PF06101.11 Vps62 Family 34 171 542 36.1 2.4e-09 1 No_clan
Cotton_A_16029_CDS 2220 2368 2192 2378 PF06101.11 Vps62 Family 32 185 542 29.4 2.5e-07 1 No_clan
Cotton_A_16029_CDS 2920 2978 2886 2978 PF06398.11 Pex24p Family 304 366 366 28.4 8.1e-07 1 CL0484
Cotton_A_16029_CDS 3333 3504 3204 3505 PF06650.12 SHR-BD Family 96 270 271 42.0 6.8e-11 1 No_clan
Cotton_A_19547_CDS 43 218 43 218 PF14543.6 TAXi_N Domain 1 178 178 109.2 2.6e-31 1 CL0129
Cotton_A_19547_CDS 259 423 259 424 PF14541.6 TAXi_C Domain 1 160 161 184.4 1.2e-54 1 CL0129
Cotton_A_05104_CDS 62 136 62 137 PF03101.15 FAR1 Domain 1 89 90 41.9 1.2e-10 1 CL0274
Cotton_A_05104_CDS 275 366 274 368 PF10551.9 MULE Domain 2 94 96 84.1 6.8e-24 1 CL0219
Cotton_A_05104_CDS 561 587 541 589 PF04434.17 SWIM Domain 12 38 40 37.8 1e-09 1 No_clan
Cotton_A_05104_CDS 819 867 815 869 PF07258.14 COMM_domain Domain 24 70 72 25.2 1.3e-05 1 No_clan
Cotton_A_24481_CDS 61 688 60 688 PF09731.9 Mitofilin Family 2 623 623 240.8 3.8e-71 1 No_clan
Cotton_A_30086_CDS 48 476 46 477 PF00083.24 Sugar_tr Family 2 450 452 298.1 1.1e-88 1 CL0015
Cotton_A_29427_CDS 12 110 12 110 PF04526.13 DUF568 Family 1 101 101 87.9 5.9e-25 1 No_clan
Cotton_A_01008_CDS 5 59 3 60 PF00403.26 HMA Domain 3 61 62 46.3 4.2e-12 1 No_clan
Cotton_A_08400_CDS 23 58 15 62 PF07647.17 SAM_2 Domain 24 60 66 24.6 2e-05 1 CL0003
Cotton_A_00294_CDS 107 268 107 274 PF01554.18 MatE Family 1 148 161 47.8 1.2e-12 1 CL0222
Cotton_A_00294_CDS 361 497 349 507 PF01554.18 MatE Family 15 151 161 46.7 2.5e-12 1 CL0222
Cotton_A_03099_CDS 27 62 25 62 PF08263.12 LRRNT_2 Family 3 41 41 28.4 1.5e-06 1 No_clan
Cotton_A_03099_CDS 71 126 68 127 PF13855.6 LRR_8 Repeat 6 60 61 33.4 2.8e-08 1 CL0022
Cotton_A_03099_CDS 350 606 347 610 PF00069.25 Pkinase Domain 5 257 264 124.9 3.7e-36 1 CL0016
Cotton_A_25554_CDS 3 29 3 30 PF08263.12 LRRNT_2 Family 10 40 41 16.2 0.01 1 No_clan
Cotton_A_25554_CDS 295 328 291 329 PF08263.12 LRRNT_2 Family 6 40 41 22.6 9.3e-05 1 No_clan
Cotton_A_25554_CDS 342 391 332 391 PF13855.6 LRR_8 Repeat 12 61 61 32.6 5e-08 1 CL0022
Cotton_A_25554_CDS 546 820 543 820 PF07714.17 Pkinase_Tyr Domain 4 259 259 160.5 4.7e-47 1 CL0016
Cotton_A_13903_CDS 37 298 36 298 PF05910.12 DUF868 Family 2 279 279 283.0 3e-84 1 No_clan
Cotton_A_13342_CDS 273 628 272 629 PF03081.15 Exo70 Family 2 375 376 369.7 1.7e-110 1 CL0295
Cotton_A_16161_CDS 19 81 18 82 PF13432.6 TPR_16 Family 2 67 68 24.6 2.9e-05 1 CL0020
Cotton_A_16161_CDS 83 115 82 115 PF00515.28 TPR_1 Repeat 2 34 34 36.4 2.7e-09 1 CL0020
Cotton_A_16161_CDS 122 215 122 215 PF08321.12 PPP5 Family 1 94 94 96.0 1.2e-27 1 CL0020
Cotton_A_16161_CDS 225 416 223 418 PF00149.28 Metallophos Domain 4 202 204 112.3 4.2e-32 1 CL0163
Cotton_A_01864_CDS 10 30 1 30 PF08263.12 LRRNT_2 Family 22 41 41 21.4 0.00023 1 No_clan
Cotton_A_01864_CDS 183 241 182 242 PF13855.6 LRR_8 Repeat 2 60 61 30.8 1.8e-07 1 CL0022
Cotton_A_01864_CDS 251 266 250 269 PF13516.6 LRR_6 Repeat 2 17 24 13.5 0.056 1 CL0022
Cotton_A_01864_CDS 277 334 276 335 PF13855.6 LRR_8 Repeat 2 60 61 28.4 1e-06 1 CL0022
Cotton_A_01864_CDS 411 429 410 470 PF00560.33 LRR_1 Repeat 2 20 23 9.7 1.5 1 CL0022
Cotton_A_07635_CDS 63 253 62 260 PF00300.22 His_Phos_1 Domain 2 176 194 51.1 1.3e-13 1 CL0071
Cotton_A_16743_CDS 1 112 1 112 PF02403.22 Seryl_tRNA_N Domain 1 108 108 84.5 5.5e-24 1 CL0298
Cotton_A_16743_CDS 221 408 221 408 PF00587.25 tRNA-synt_2b Domain 1 179 179 124.7 3.9e-36 1 CL0040
Cotton_A_05746_CDS 37 103 37 103 PF03810.19 IBN_N Family 1 74 74 52.0 4.9e-14 1 CL0020
Cotton_A_05746_CDS 115 258 114 258 PF08389.12 Xpo1 Family 2 149 149 134.6 2.8e-39 1 CL0020
Cotton_A_05746_CDS 337 372 336 372 PF18777.1 CRM1_repeat Repeat 2 37 37 63.7 8e-18 1 No_clan
Cotton_A_05746_CDS 409 476 409 476 PF18784.1 CRM1_repeat_2 Repeat 1 68 68 105.0 1.2e-30 1 No_clan
Cotton_A_05746_CDS 490 539 489 539 PF18787.1 CRM1_repeat_3 Repeat 2 51 51 94.1 3.9e-27 1 No_clan
Cotton_A_05746_CDS 713 1034 713 1035 PF08767.11 CRM1_C Family 1 320 321 424.5 2.6e-127 1 CL0020
Cotton_A_00663_CDS 20 90 4 91 PF02519.14 Auxin_inducible Family 20 89 90 87.3 5.5e-25 1 No_clan
Cotton_A_28738_CDS 63 112 62 113 PF00847.20 AP2 Domain 2 53 54 41.5 1.1e-10 1 CL0081
Cotton_A_29824_CDS 31 71 30 71 PF08263.12 LRRNT_2 Family 2 41 41 35.5 9e-09 1 No_clan
Cotton_A_29824_CDS 177 237 177 237 PF13855.6 LRR_8 Repeat 1 61 61 36.6 2.8e-09 1 CL0022
Cotton_A_29824_CDS 250 308 249 309 PF13855.6 LRR_8 Repeat 2 60 61 36.8 2.4e-09 1 CL0022
Cotton_A_29824_CDS 465 524 465 524 PF13855.6 LRR_8 Repeat 2 61 61 36.9 2.3e-09 1 CL0022
Cotton_A_34547_CDS 126 177 126 177 PF00249.31 Myb_DNA-binding Domain 1 46 46 25.7 1e-05 1 CL0123
Cotton_A_12671_CDS 138 174 137 178 PF00646.33 F-box Domain 6 42 48 36.6 2.8e-09 1 CL0271
Cotton_A_12671_CDS 224 278 223 279 PF01344.25 Kelch_1 Repeat 2 45 46 26.4 3.7e-06 1 CL0186
Cotton_A_12671_CDS 372 404 371 405 PF01344.25 Kelch_1 Repeat 14 45 46 23.3 3.6e-05 1 CL0186
Cotton_A_30055_CDS 74 276 74 291 PF00300.22 His_Phos_1 Domain 1 180 194 91.9 4.1e-26 1 CL0071
Cotton_A_28243_CDS 130 149 130 149 PF15365.6 PNRC Motif 1 20 20 29.8 3.6e-07 1 No_clan
Cotton_A_36607_CDS 140 270 137 271 PF01269.17 Fibrillarin Domain 95 225 226 209.0 4.7e-62 1 CL0063
Cotton_A_08342_CDS 19 114 13 114 PF14368.6 LTP_2 Family 6 97 97 61.1 8e-17 1 CL0482
Cotton_A_29367_CDS 10 57 10 57 PF00319.18 SRF-TF Domain 1 48 48 84.9 1.9e-24 1 No_clan
Cotton_A_06466_CDS 1 65 1 76 PF08424.10 NRDE-2 Family 127 183 322 40.3 2e-10 1 No_clan
Cotton_A_02608_CDS 28 78 28 79 PF05047.16 L51_S25_CI-B8 Domain 1 51 52 50.4 1.5e-13 1 CL0172
Cotton_A_00041_CDS 88 294 85 363 PF00069.25 Pkinase Domain 4 202 264 152.1 1.8e-44 1 CL0016
Cotton_A_13477_CDS 24 62 22 63 PF08263.12 LRRNT_2 Family 3 40 41 26.3 6.8e-06 1 No_clan
Cotton_A_13477_CDS 238 296 237 296 PF13855.6 LRR_8 Repeat 2 61 61 29.6 4.3e-07 1 CL0022
Cotton_A_13477_CDS 329 362 325 362 PF08263.12 LRRNT_2 Family 6 41 41 26.9 4.3e-06 1 No_clan
Cotton_A_13477_CDS 609 880 607 883 PF00069.25 Pkinase Domain 3 259 264 157.2 5.1e-46 1 CL0016
Cotton_A_26704_CDS 35 92 35 93 PF02701.15 zf-Dof Family 1 58 59 114.2 2.2e-33 1 No_clan
Cotton_A_36721_CDS 51 97 50 98 PF13041.6 PPR_2 Repeat 2 48 50 42.3 6.1e-11 1 CL0020
Cotton_A_36721_CDS 126 151 124 152 PF01535.20 PPR Family 4 29 31 20.2 0.00048 1 CL0020
Cotton_A_36721_CDS 152 198 151 200 PF13041.6 PPR_2 Repeat 2 48 50 31.6 1.4e-07 1 CL0020
Cotton_A_36721_CDS 253 300 252 300 PF13041.6 PPR_2 Repeat 2 49 50 31.4 1.6e-07 1 CL0020
Cotton_A_36721_CDS 328 353 325 355 PF01535.20 PPR Family 4 29 31 16.5 0.0071 1 CL0020
Cotton_A_36721_CDS 356 382 356 384 PF01535.20 PPR Family 1 27 31 11.2 0.35 1 CL0020
Cotton_A_36721_CDS 452 500 452 501 PF13041.6 PPR_2 Repeat 1 49 50 42.1 7.5e-11 1 CL0020
Cotton_A_36721_CDS 528 551 527 554 PF01535.20 PPR Family 3 26 31 11.4 0.31 1 CL0020
Cotton_A_36721_CDS 599 622 594 622 PF01535.20 PPR Family 8 31 31 11.5 0.28 1 CL0020
Cotton_A_36721_CDS 626 749 626 749 PF14432.6 DYW_deaminase Family 1 127 127 100.6 5.5e-29 1 CL0109
Cotton_A_07778_CDS 41 133 40 145 PF00168.30 C2 Domain 2 91 103 83.4 1.2e-23 1 CL0154
Cotton_A_07778_CDS 202 308 202 308 PF00168.30 C2 Domain 1 103 103 68.1 6.5e-19 1 CL0154
Cotton_A_07778_CDS 364 475 364 475 PF00168.30 C2 Domain 1 103 103 80.9 7e-23 1 CL0154
Cotton_A_07778_CDS 620 775 620 775 PF08372.10 PRT_C Family 1 156 156 274.3 2.4e-82 1 CL0484
Cotton_A_08117_CDS 136 179 135 179 PF13639.6 zf-RING_2 Domain 2 44 44 53.8 1.7e-14 1 CL0229
Cotton_A_00488_CDS 42 102 28 102 PF12796.7 Ank_2 Repeat 30 83 83 32.6 8.8e-08 1 CL0465
Cotton_A_00488_CDS 104 175 101 175 PF12796.7 Ank_2 Repeat 25 83 83 45.0 1.2e-11 1 CL0465
Cotton_A_07499_CDS 33 652 33 653 PF03169.15 OPT Family 1 615 616 448.5 4e-134 1 No_clan
Cotton_A_14734_CDS 63 239 63 239 PF01397.21 Terpene_synth Domain 1 192 192 174.6 1.8e-51 1 No_clan
Cotton_A_14734_CDS 270 534 270 535 PF03936.16 Terpene_synth_C Domain 1 266 267 310.9 6.4e-93 1 CL0613
Cotton_A_32688_CDS 78 164 78 164 PF08712.11 Nfu_N Domain 1 87 87 104.2 2.9e-30 1 No_clan
Cotton_A_32688_CDS 192 260 192 260 PF01106.17 NifU Family 1 67 67 100.9 3.1e-29 1 CL0232
Cotton_A_19650_CDS 257 407 241 419 PF00201.18 UDPGT Family 270 409 499 96.5 1.6e-27 1 CL0113
Cotton_A_00622_CDS 93 464 91 465 PF03759.13 PRONE Family 3 362 363 608.7 2.9e-183 1 No_clan
Cotton_A_24293_CDS 271 427 271 458 PF05050.12 Methyltransf_21 Family 1 152 173 22.2 0.00011 1 CL0063
Cotton_A_35411_CDS 30 86 29 102 PF05938.11 Self-incomp_S1 Family 2 58 104 65.9 3.8e-18 1 No_clan
Cotton_A_39523_CDS 75 227 72 227 PF00650.20 CRAL_TRIO Domain 5 159 159 89.8 1.5e-25 1 CL0512
Cotton_A_13745_CDS 19 157 12 158 PF06708.11 DUF1195 Family 8 146 147 216.9 8.8e-65 1 No_clan
Cotton_A_00076_CDS 213 279 212 284 PF08743.10 Nse4_C Domain 2 68 91 63.5 1.7e-17 1 No_clan
Cotton_A_20972_CDS 63 305 40 314 PF00481.21 PP2C Family 35 251 258 136.3 1.4e-39 1 CL0238
Cotton_A_35235_CDS 10 135 10 136 PF02365.15 NAM Family 1 125 126 124.7 4.1e-36 1 No_clan
Cotton_A_04921_CDS 11 89 10 90 PF10785.9 NADH-u_ox-rdase Domain 2 81 82 82.6 2.4e-23 1 No_clan
Cotton_A_13801_CDS 9 176 7 176 PF04525.12 LOR Domain 3 187 187 110.3 8.2e-32 1 CL0395
Cotton_A_07617_CDS 118 187 116 188 PF02325.17 YGGT Family 3 69 69 54.8 9.5e-15 1 No_clan
Cotton_A_33894_CDS 23 92 23 94 PF00240.23 ubiquitin Domain 1 70 72 73.8 6.7e-21 1 CL0072
Cotton_A_33894_CDS 509 545 508 545 PF00627.31 UBA Domain 2 37 37 37.8 1.3e-09 1 CL0214
Cotton_A_03302_CDS 127 190 127 193 PF00174.19 Oxidored_molyb Domain 1 63 172 50.2 2.2e-13 1 CL0072
Cotton_A_03302_CDS 237 365 235 368 PF03404.16 Mo-co_dimer Domain 3 135 138 174.7 9.4e-52 1 CL0159
Cotton_A_03302_CDS 414 483 413 484 PF00173.28 Cyt-b5 Domain 2 73 74 75.5 2.8e-21 1 No_clan
Cotton_A_03302_CDS 532 638 531 638 PF00970.24 FAD_binding_6 Domain 2 99 99 116.3 6.1e-34 1 CL0076
Cotton_A_03302_CDS 658 692 658 696 PF00175.21 NAD_binding_1 Domain 1 37 109 25.1 2.1e-05 1 CL0091
Cotton_A_21404_CDS 109 217 104 218 PF01699.24 Na_Ca_ex Family 57 150 151 37.8 1.7e-09 1 No_clan
Cotton_A_21404_CDS 239 379 237 384 PF01699.24 Na_Ca_ex Family 3 146 151 51.7 8.9e-14 1 No_clan
Cotton_A_29457_CDS 32 144 30 145 PF01426.18 BAH Domain 3 121 122 83.5 1e-23 1 No_clan
Cotton_A_29457_CDS 149 197 149 198 PF00628.29 PHD Domain 1 51 52 38.5 7.9e-10 1 CL0390
Cotton_A_23647_CDS 616 661 616 662 PF07496.15 zf-CW Domain 1 47 48 52.3 4.3e-14 1 No_clan
Cotton_A_13255_CDS 123 167 121 170 PF03004.14 Transposase_24 Family 3 48 142 24.6 2.2e-05 1 No_clan
Cotton_A_08472_CDS 40 190 39 198 PF03162.13 Y_phosphatase2 Domain 2 152 165 206.2 2.3e-61 1 CL0031
Cotton_A_22500_CDS 1 189 1 189 PF14009.6 DUF4228 Family 1 179 179 92.8 3.2e-26 1 No_clan
Cotton_A_34277_CDS 6 84 2 84 PF04857.20 CAF1 Family 216 319 319 24.6 1.2e-05 1 CL0219
Cotton_A_24173_CDS 28 170 27 172 PF00141.23 peroxidase Domain 2 143 229 172.7 9.6e-51 1 CL0617
Cotton_A_19718_CDS 11 79 10 80 PF00076.22 RRM_1 Domain 2 69 70 78.6 2.2e-22 1 CL0221
Cotton_A_08422_CDS 372 680 357 683 PF04869.14 Uso1_p115_head Family 31 309 312 94.8 5.3e-27 1 No_clan
Cotton_A_08422_CDS 782 906 781 906 PF04871.13 Uso1_p115_C Family 2 126 126 99.2 2.1e-28 1 No_clan
Cotton_A_38753_CDS 68 445 62 453 PF05701.11 WEMBL Family 34 377 562 46.1 2.9e-12 1 No_clan
Cotton_A_07325_CDS 31 130 30 131 PF14523.6 Syntaxin_2 Domain 2 100 101 98.9 1.7e-28 1 CL0445
Cotton_A_07325_CDS 218 269 217 269 PF05739.19 SNARE Family 2 53 53 44.9 8.2e-12 1 No_clan
Cotton_A_26522_CDS 30 69 29 69 PF08263.12 LRRNT_2 Family 2 41 41 31.1 2.2e-07 1 No_clan
Cotton_A_26522_CDS 245 266 244 266 PF00560.33 LRR_1 Repeat 2 23 23 10.1 1.1 1 CL0022
Cotton_A_26522_CDS 483 543 483 543 PF13855.6 LRR_8 Repeat 1 61 61 28.2 1.2e-06 1 CL0022
Cotton_A_26522_CDS 628 687 627 687 PF13855.6 LRR_8 Repeat 2 61 61 38.3 8e-10 1 CL0022
Cotton_A_26522_CDS 808 1076 803 1078 PF00069.25 Pkinase Domain 6 260 264 160.6 4.7e-47 1 CL0016
Cotton_A_14833_CDS 13 93 11 119 PF18052.1 Rx_N Domain 5 85 93 72.0 3.6e-20 1 No_clan
Cotton_A_32645_CDS 86 118 80 118 PF08263.12 LRRNT_2 Family 8 41 41 22.7 8.8e-05 1 No_clan
Cotton_A_00655_CDS 5 296 4 297 PF05653.14 Mg_trans_NIPA Family 2 294 295 443.0 4.1e-133 1 CL0184
Cotton_A_11141_CDS 13 122 12 126 PF01412.18 ArfGap Domain 2 113 117 95.4 2.3e-27 1 No_clan
Cotton_A_21488_CDS 6 106 5 112 PF00635.26 Motile_Sperm Domain 2 102 109 104.3 2.9e-30 1 CL0556
Cotton_A_16039_CDS 65 136 62 139 PF03330.18 DPBB_1 Domain 4 80 83 44.9 1.1e-11 1 CL0199
Cotton_A_16039_CDS 152 234 151 234 PF01357.21 Pollen_allerg_1 Domain 2 80 80 68.9 2.9e-19 1 CL0159
Cotton_A_10879_CDS 189 247 188 251 PF13432.6 TPR_16 Family 2 63 68 22.7 0.00012 1 CL0020
Cotton_A_10879_CDS 378 420 377 426 PF13432.6 TPR_16 Family 3 46 68 17.2 0.0059 1 CL0020
Cotton_A_10879_CDS 455 485 452 485 PF00515.28 TPR_1 Repeat 4 34 34 28.2 1.1e-06 1 CL0020
Cotton_A_29030_CDS 1 125 1 125 PF00705.18 PCNA_N Domain 1 127 127 197.1 7.1e-59 1 CL0060
Cotton_A_29030_CDS 127 254 127 254 PF02747.15 PCNA_C Domain 1 128 128 203.7 8.8e-61 1 CL0060
Cotton_A_38221_CDS 396 533 395 533 PF04146.15 YTH Domain 2 166 166 134.6 3.1e-39 1 CL0178
Cotton_A_24833_CDS 131 197 130 197 PF01066.21 CDP-OH_P_transf Family 2 66 66 48.4 1.2e-12 1 No_clan
Cotton_A_31520_CDS 129 412 125 413 PF06814.13 Lung_7-TM_R Family 6 294 295 162.5 1.3e-47 1 CL0192
Cotton_A_40286_CDS 149 383 145 385 PF00931.22 NB-ARC Domain 5 250 252 174.9 1.7e-51 1 CL0023
Cotton_A_40286_CDS 522 577 520 578 PF13855.6 LRR_8 Repeat 3 59 61 38.1 9.6e-10 1 CL0022
Cotton_A_40147_CDS 10 57 10 57 PF00319.18 SRF-TF Domain 1 48 48 91.3 1.9e-26 1 No_clan
Cotton_A_40147_CDS 85 170 75 171 PF01486.17 K-box Family 7 92 93 91.0 4e-26 1 No_clan
Cotton_A_01128_CDS 18 466 15 490 PF01602.20 Adaptin_N Family 5 448 524 304.2 1.6e-90 1 CL0020
Cotton_A_01128_CDS 669 807 669 808 PF07718.12 Coatamer_beta_C Domain 1 139 140 198.4 4.4e-59 1 CL0159
Cotton_A_01128_CDS 813 940 813 940 PF14806.6 Coatomer_b_Cpla Domain 1 128 128 195.9 2.1e-58 1 CL0545
Cotton_A_18570_CDS 57 247 55 252 PF00106.25 adh_short Domain 4 188 195 133.8 4.9e-39 1 CL0063
Cotton_A_23822_CDS 105 168 104 180 PF08240.12 ADH_N Domain 2 64 109 39.5 4.2e-10 1 CL0296
Cotton_A_23822_CDS 270 381 270 381 PF13602.6 ADH_zinc_N_2 Domain 1 133 133 67.6 2.2e-18 1 CL0063
Cotton_A_23237_CDS 66 154 66 154 PF03330.18 DPBB_1 Domain 1 83 83 86.8 8.6e-25 1 CL0199
Cotton_A_23237_CDS 165 243 165 243 PF01357.21 Pollen_allerg_1 Domain 1 80 80 89.6 1e-25 1 CL0159
Cotton_A_05320_CDS 18 103 11 103 PF00125.24 Histone Domain 46 131 131 68.5 6.7e-19 1 CL0012
Cotton_A_05320_CDS 104 133 104 134 PF16211.5 Histone_H2A_C Family 1 31 35 41.4 8.8e-11 1 No_clan
Cotton_A_00141_CDS 32 70 31 70 PF08263.12 LRRNT_2 Family 2 41 41 23.5 5.1e-05 1 No_clan
Cotton_A_00141_CDS 80 135 75 135 PF13855.6 LRR_8 Repeat 6 61 61 27.3 2.3e-06 1 CL0022
Cotton_A_00141_CDS 175 232 174 233 PF13855.6 LRR_8 Repeat 2 60 61 27.7 1.7e-06 1 CL0022
Cotton_A_00141_CDS 246 305 245 305 PF13855.6 LRR_8 Repeat 2 61 61 31.1 1.5e-07 1 CL0022
Cotton_A_00141_CDS 318 377 317 377 PF13855.6 LRR_8 Repeat 2 61 61 29.4 5.1e-07 1 CL0022
Cotton_A_00141_CDS 392 452 391 452 PF13855.6 LRR_8 Repeat 2 61 61 34.4 1.4e-08 1 CL0022
Cotton_A_00141_CDS 527 583 527 607 PF13855.6 LRR_8 Repeat 5 61 61 41.6 7.5e-11 1 CL0022
Cotton_A_27634_CDS 36 80 36 81 PF00249.31 Myb_DNA-binding Domain 1 45 46 52.3 4.8e-14 1 CL0123
Cotton_A_26312_CDS 182 232 181 233 PF00847.20 AP2 Domain 2 53 54 49.9 2.7e-13 1 CL0081
Cotton_A_33787_CDS 73 182 72 184 PF13962.6 PGG Domain 2 113 116 82.0 2.6e-23 1 No_clan
Cotton_A_23315_CDS 96 294 93 294 PF02705.16 K_trans Family 72 268 534 239.9 4.9e-71 1 CL0062
Cotton_A_29490_CDS 58 141 58 141 PF03330.18 DPBB_1 Domain 1 83 83 76.4 1.5e-21 1 CL0199
Cotton_A_29490_CDS 152 229 152 229 PF01357.21 Pollen_allerg_1 Domain 1 80 80 95.3 1.7e-27 1 CL0159
Cotton_A_07482_CDS 74 225 74 225 PF08082.11 PRO8NT Domain 1 152 152 285.9 6.7e-86 1 No_clan
Cotton_A_07482_CDS 413 818 412 818 PF08083.11 PROCN Domain 2 407 407 783.2 4.3e-236 1 No_clan
Cotton_A_07482_CDS 1003 1093 1003 1094 PF10598.9 RRM_4 Domain 1 91 92 156.6 1.6e-46 1 No_clan
Cotton_A_19539_CDS 191 423 185 423 PF03372.23 Exo_endo_phos Domain 17 233 233 33.4 3.1e-08 1 CL0530
Cotton_A_20633_CDS 185 211 185 215 PF01535.20 PPR Family 1 27 31 12.8 0.11 1 CL0020
Cotton_A_20633_CDS 217 266 217 266 PF13041.6 PPR_2 Repeat 1 50 50 50.4 1.9e-13 1 CL0020
Cotton_A_20633_CDS 287 336 287 336 PF13041.6 PPR_2 Repeat 1 50 50 66.5 1.7e-18 1 CL0020
Cotton_A_20633_CDS 357 404 357 406 PF13041.6 PPR_2 Repeat 1 48 50 52.7 3.6e-14 1 CL0020
Cotton_A_20633_CDS 486 532 485 546 PF13812.6 PPR_3 Repeat 2 48 63 23.2 5.4e-05 1 CL0020
Cotton_A_20633_CDS 571 600 570 600 PF01535.20 PPR Family 2 31 31 16.7 0.0063 1 CL0020
Cotton_A_35994_CDS 73 114 51 114 PF06955.12 XET_C Family 9 46 47 63.1 1.6e-17 1 CL0004
Cotton_A_09027_CDS 47 65 45 65 PF00612.27 IQ Motif 3 21 21 22.4 6.3e-05 1 CL0220
Cotton_A_09027_CDS 68 85 67 87 PF00612.27 IQ Motif 2 19 21 11.6 0.19 1 CL0220
Cotton_A_34582_CDS 58 394 58 394 PF00225.23 Kinesin Domain 1 333 333 394.1 4.1e-118 1 CL0023
Cotton_A_07239_CDS 39 154 39 155 PF16983.5 MFS_MOT1 Family 1 110 111 93.8 8.3e-27 1 CL0062
Cotton_A_07239_CDS 279 397 278 397 PF16983.5 MFS_MOT1 Family 2 111 111 116.1 9.9e-34 1 CL0062
Cotton_A_36129_CDS 11 121 11 126 PF10419.9 TFIIIC_sub6 Domain 1 89 94 53.0 2.3e-14 1 No_clan
Cotton_A_22292_CDS 99 247 99 248 PF13439.6 Glyco_transf_4 Domain 1 169 170 41.7 1.2e-10 1 CL0113
Cotton_A_22292_CDS 270 410 257 418 PF00534.20 Glycos_transf_1 Family 15 163 172 74.7 5.9e-21 1 CL0113
Cotton_A_32338_CDS 327 369 326 369 PF13639.6 zf-RING_2 Domain 2 44 44 46.2 4.2e-12 1 CL0229
Cotton_A_25497_CDS 24 145 24 151 PF04073.15 tRNA_edit Family 1 117 123 90.7 7.3e-26 1 No_clan
Cotton_A_17224_CDS 63 156 63 167 PF14226.6 DIOX_N Family 1 103 118 37.9 2.4e-09 1 CL0029
Cotton_A_17224_CDS 216 309 201 311 PF03171.20 2OG-FeII_Oxy Domain 5 99 101 89.6 1.5e-25 1 CL0029
Cotton_A_17550_CDS 81 196 81 196 PF08446.11 PAS_2 Domain 1 107 107 134.5 2e-39 1 CL0183
Cotton_A_17550_CDS 229 399 229 399 PF01590.26 GAF Domain 1 133 133 116.5 1.2e-33 1 CL0161
Cotton_A_17550_CDS 412 586 410 589 PF00360.20 PHY Family 3 180 183 191.5 8.1e-57 1 CL0161
Cotton_A_17550_CDS 617 685 616 688 PF00989.25 PAS Domain 2 70 113 55.4 5.2e-15 1 CL0183
Cotton_A_17550_CDS 787 908 786 908 PF00989.25 PAS Domain 2 113 113 71.8 4.3e-20 1 CL0183
Cotton_A_17550_CDS 935 992 929 992 PF00512.25 HisKA Domain 8 67 67 35.4 7.9e-09 1 CL0025
Cotton_A_17550_CDS 1039 1143 1039 1153 PF02518.26 HATPase_c Domain 1 102 112 33.7 4.2e-08 1 CL0025
Cotton_A_17150_CDS 10 97 9 130 PF18052.1 Rx_N Domain 2 89 93 71.2 6.7e-20 1 No_clan
Cotton_A_17150_CDS 171 400 171 421 PF00931.22 NB-ARC Domain 1 222 252 156.0 9.4e-46 1 CL0023
Cotton_A_38720_CDS 182 209 181 211 PF01535.20 PPR Family 2 29 31 13.8 0.051 1 CL0020
Cotton_A_38720_CDS 211 236 209 240 PF12854.7 PPR_1 Repeat 3 28 34 33.0 3.5e-08 1 CL0020
Cotton_A_38720_CDS 248 296 248 297 PF13041.6 PPR_2 Repeat 1 49 50 53.0 2.8e-14 1 CL0020
Cotton_A_38720_CDS 322 367 322 367 PF13041.6 PPR_2 Repeat 5 50 50 55.9 3.7e-15 1 CL0020
Cotton_A_38720_CDS 388 437 388 437 PF13041.6 PPR_2 Repeat 1 50 50 63.3 1.7e-17 1 CL0020
Cotton_A_38720_CDS 457 506 457 506 PF13041.6 PPR_2 Repeat 1 50 50 71.8 3.9e-20 1 CL0020
Cotton_A_38720_CDS 528 576 527 576 PF13041.6 PPR_2 Repeat 2 50 50 55.9 3.6e-15 1 CL0020
Cotton_A_38720_CDS 601 630 600 630 PF01535.20 PPR Family 2 31 31 15.3 0.017 1 CL0020
Cotton_A_38720_CDS 632 679 632 681 PF13041.6 PPR_2 Repeat 1 48 50 47.2 1.9e-12 1 CL0020
Cotton_A_38720_CDS 745 909 739 915 PF17177.4 PPR_long Domain 25 198 212 33.1 3.5e-08 1 CL0020
Cotton_A_09385_CDS 11 92 11 92 PF01198.19 Ribosomal_L31e Family 1 82 82 144.3 9.7e-43 1 No_clan
Cotton_A_13883_CDS 35 228 31 228 PF00687.21 Ribosomal_L1 Domain 3 204 204 145.1 2.2e-42 1 No_clan
Cotton_A_36745_CDS 1 154 1 154 PF00407.19 Bet_v_1 Domain 1 151 151 68.5 5.8e-19 1 CL0209
Cotton_A_13084_CDS 212 242 205 242 PF00400.32 WD40 Repeat 10 38 38 14.7 0.043 1 CL0186
Cotton_A_28279_CDS 57 475 57 475 PF01593.24 Amino_oxidase Domain 1 452 452 157.2 8.2e-46 1 CL0063
Cotton_A_37144_CDS 29 63 28 63 PF06376.12 AGP Family 2 36 36 58.3 4.8e-16 1 No_clan
Cotton_A_12100_CDS 192 269 191 271 PF12872.7 OST-HTH Domain 2 70 72 47.8 9.5e-13 1 CL0123
Cotton_A_12100_CDS 309 358 307 367 PF00076.22 RRM_1 Domain 9 61 70 31.6 1.1e-07 1 CL0221
Cotton_A_14105_CDS 6 71 2 79 PF13456.6 RVT_3 Domain 10 73 124 26.2 5.6e-06 1 CL0219
Cotton_A_36620_CDS 67 128 67 128 PF00226.31 DnaJ Domain 1 63 63 70.6 9e-20 1 CL0392
Cotton_A_36620_CDS 502 711 501 711 PF11926.8 DUF3444 Family 2 212 212 242.4 3.8e-72 1 No_clan
Cotton_A_36620_CDS 946 1054 940 1055 PF11926.8 DUF3444 Family 8 123 212 95.7 3e-27 1 No_clan
Cotton_A_29981_CDS 7 92 1 97 PF13456.6 RVT_3 Domain 33 119 124 35.1 9.4e-09 1 CL0219
Cotton_A_10904_CDS 79 105 75 105 PF01535.20 PPR Family 5 31 31 13.1 0.087 1 CL0020
Cotton_A_10904_CDS 109 156 107 156 PF13041.6 PPR_2 Repeat 3 50 50 40.1 3e-10 1 CL0020
Cotton_A_10904_CDS 167 225 165 227 PF13812.6 PPR_3 Repeat 3 61 63 27.7 2.1e-06 1 CL0020
Cotton_A_10904_CDS 244 273 243 274 PF12854.7 PPR_1 Repeat 2 31 34 27.3 2.1e-06 1 CL0020
Cotton_A_10904_CDS 287 329 285 331 PF13041.6 PPR_2 Repeat 6 48 50 38.1 1.2e-09 1 CL0020
Cotton_A_37758_CDS 55 170 52 170 PF00188.26 CAP Domain 4 126 126 75.0 8.9e-21 1 CL0659
Cotton_A_25126_CDS 46 212 46 212 PF07800.12 DUF1644 Family 1 168 168 227.9 7.2e-68 1 CL0229
Cotton_A_07241_CDS 48 113 46 123 PF13774.6 Longin Domain 3 69 84 40.5 2.1e-10 1 No_clan
Cotton_A_07241_CDS 137 194 136 225 PF00957.21 Synaptobrevin Family 2 59 89 50.2 1.7e-13 1 CL0445
Cotton_A_03472_CDS 102 349 100 370 PF01040.18 UbiA Family 3 236 252 133.1 1e-38 1 CL0613
Cotton_A_14269_CDS 21 157 16 159 PF00892.20 EamA Family 7 135 137 48.7 8.3e-13 1 CL0184
Cotton_A_14269_CDS 204 341 203 342 PF00892.20 EamA Family 2 136 137 57.3 1.8e-15 1 CL0184
Cotton_A_13599_CDS 4 826 4 826 PF10191.9 COG7 Family 1 768 768 908.1 4.7e-273 1 CL0294
Cotton_A_05658_CDS 63 96 63 96 PF06200.14 tify Domain 1 34 34 59.7 1.2e-16 1 No_clan
Cotton_A_05658_CDS 158 182 158 183 PF09425.10 CCT_2 Motif 1 25 26 50.1 1.7e-13 1 CL0281
Cotton_A_12545_CDS 94 123 94 124 PF14383.6 VARLMGL Domain 2 31 32 48.1 5.9e-13 1 No_clan
Cotton_A_12545_CDS 805 963 801 963 PF14309.6 DUF4378 Family 6 165 165 68.8 6.8e-19 1 No_clan
Cotton_A_03581_CDS 58 144 57 144 PF01221.18 Dynein_light Domain 2 86 86 98.3 2.4e-28 1 No_clan
Cotton_A_10814_CDS 105 126 104 127 PF01535.20 PPR Family 6 27 31 9.3 1.4 1 CL0020
Cotton_A_10814_CDS 133 159 132 161 PF01535.20 PPR Family 3 29 31 19.0 0.0012 1 CL0020
Cotton_A_10814_CDS 204 225 204 229 PF01535.20 PPR Family 4 25 31 10.7 0.5 1 CL0020
Cotton_A_10814_CDS 233 262 232 262 PF01535.20 PPR Family 2 31 31 24.8 1.6e-05 1 CL0020
Cotton_A_10814_CDS 263 291 263 293 PF01535.20 PPR Family 1 29 31 40.1 2.1e-10 1 CL0020
Cotton_A_10814_CDS 365 413 365 414 PF13041.6 PPR_2 Repeat 1 49 50 39.3 5.3e-10 1 CL0020
Cotton_A_09304_CDS 45 180 28 181 PF02309.16 AUX_IAA Family 72 235 237 193.2 5.9e-57 1 CL0072
Cotton_A_06138_CDS 4 157 2 158 PF12850.7 Metallophos_2 Domain 3 163 165 69.6 3.4e-19 1 CL0163
Cotton_A_05890_CDS 282 497 280 498 PF12348.8 CLASP_N Family 3 226 227 159.4 9.7e-47 1 CL0020
Cotton_A_05890_CDS 796 985 785 998 PF12348.8 CLASP_N Family 17 208 227 50.0 2.8e-13 1 CL0020
Cotton_A_05890_CDS 1223 1315 1220 1318 PF12755.7 Vac14_Fab1_bd Family 4 94 97 22.2 0.00016 1 CL0020
Cotton_A_06659_CDS 27 266 26 269 PF00139.19 Lectin_legB Domain 2 246 249 228.5 8.7e-68 1 CL0004
Cotton_A_06659_CDS 339 605 338 607 PF00069.25 Pkinase Domain 2 260 264 168.5 1.8e-49 1 CL0016
Cotton_A_14538_CDS 88 232 87 233 PF00675.20 Peptidase_M16 Family 2 148 149 134.7 2.3e-39 1 CL0094
Cotton_A_14538_CDS 241 423 239 425 PF05193.21 Peptidase_M16_C Domain 4 181 183 114.5 5.5e-33 1 CL0094
Cotton_A_00583_CDS 87 390 87 395 PF01866.17 Diphthamide_syn Family 1 297 303 373.0 1.2e-111 1 No_clan
Cotton_A_14301_CDS 88 108 86 109 PF05678.14 VQ Motif 4 24 28 36.0 3.4e-09 1 No_clan
Cotton_A_02474_CDS 28 271 27 273 PF00139.19 Lectin_legB Domain 2 247 249 210.1 3.8e-62 1 CL0004
Cotton_A_15263_CDS 5 141 5 142 PF00179.26 UQ_con Domain 1 139 140 176.4 2.2e-52 1 CL0208
Cotton_A_26159_CDS 65 294 63 294 PF00270.29 DEAD Domain 3 176 176 115.3 2.5e-33 1 CL0023
Cotton_A_26159_CDS 331 441 329 441 PF00271.31 Helicase_C Family 3 111 111 85.4 3.1e-24 1 CL0023
Cotton_A_03448_CDS 70 120 69 120 PF00249.31 Myb_DNA-binding Domain 2 46 46 33.7 3e-08 1 CL0123
Cotton_A_24047_CDS 108 209 108 210 PF02362.21 B3 Family 1 100 101 75.9 1.8e-21 1 CL0405
Cotton_A_24047_CDS 278 360 277 360 PF06507.13 Auxin_resp Family 2 83 83 110.6 3.4e-32 1 No_clan
Cotton_A_20083_CDS 80 125 76 146 PF00069.25 Pkinase Domain 111 153 264 35.8 5.3e-09 1 CL0016
Cotton_A_02184_CDS 141 293 140 305 PF00069.25 Pkinase Domain 2 151 264 128.9 2.2e-37 1 CL0016
Cotton_A_02184_CDS 366 472 344 472 PF00069.25 Pkinase Domain 153 264 264 74.2 1e-20 1 CL0016
Cotton_A_03559_CDS 36 190 18 192 PF01435.18 Peptidase_M48 Domain 22 194 196 100.8 8.3e-29 1 CL0126
Cotton_A_00190_CDS 5 75 1 75 PF00223.19 PsaA_PsaB Family 495 567 718 125.9 1.6e-36 1 No_clan
Cotton_A_05394_CDS 87 590 87 591 PF00118.24 Cpn60_TCP1 Family 1 490 491 351.2 8.7e-105 1 No_clan
Cotton_A_28138_CDS 41 440 37 442 PF06838.11 Met_gamma_lyase Domain 6 402 405 556.9 1.9e-167 1 CL0061
Cotton_A_02100_CDS 17 297 16 297 PF03619.16 Solute_trans_a Family 2 265 265 293.5 1.5e-87 1 No_clan
Cotton_A_17221_CDS 10 57 10 57 PF00319.18 SRF-TF Domain 1 48 48 86.1 8e-25 1 No_clan
Cotton_A_17221_CDS 93 143 85 157 PF01486.17 K-box Family 14 64 93 32.3 8.1e-08 1 No_clan
Cotton_A_14355_CDS 105 148 104 148 PF13639.6 zf-RING_2 Domain 2 44 44 43.9 2.2e-11 1 CL0229
Cotton_A_40571_CDS 218 254 215 264 PF01494.19 FAD_binding_3 Family 4 40 349 24.7 1.2e-05 1 CL0063
Cotton_A_36161_CDS 4 282 4 282 PF00069.25 Pkinase Domain 1 264 264 226.3 4.3e-67 1 CL0016
Cotton_A_13226_CDS 12 146 12 146 PF04061.14 ORMDL Family 1 136 136 168.9 4.7e-50 1 No_clan
Cotton_A_17592_CDS 133 177 133 177 PF00097.25 zf-C3HC4 Domain 1 41 41 31.7 1e-07 1 CL0229
Cotton_A_17592_CDS 257 420 257 420 PF17979.1 zf-CRD Domain 1 159 159 171.0 1.9e-50 1 CL0361
Cotton_A_25632_CDS 9 56 1 58 PF00153.27 Mito_carr Family 48 95 97 26.6 4.2e-06 1 No_clan
Cotton_A_25632_CDS 67 144 60 151 PF00153.27 Mito_carr Family 11 89 97 39.1 5.4e-10 1 No_clan
Cotton_A_32431_CDS 280 304 278 305 PF01535.20 PPR Family 6 30 31 13.2 0.082 1 CL0020
Cotton_A_32431_CDS 307 350 303 352 PF13041.6 PPR_2 Repeat 5 48 50 31.9 1.1e-07 1 CL0020
Cotton_A_03327_CDS 14 104 14 108 PF12776.7 Myb_DNA-bind_3 Domain 1 92 96 74.7 8.7e-21 1 CL0123
Cotton_A_06852_CDS 53 395 52 411 PF00083.24 Sugar_tr Family 2 359 452 238.9 1e-70 1 CL0015
Cotton_A_13493_CDS 2 90 1 91 PF00082.22 Peptidase_S8 Domain 214 296 298 63.5 1.9e-17 1 No_clan
Cotton_A_13493_CDS 147 188 147 191 PF17766.1 fn3_6 Domain 1 42 99 31.4 1.6e-07 1 CL0159
Cotton_A_22081_CDS 1 323 1 323 PF03105.19 SPX Domain 1 384 384 211.3 4.1e-62 1 No_clan
Cotton_A_22081_CDS 413 751 412 751 PF03124.14 EXS Family 2 331 331 298.8 5.2e-89 1 CL0182
Cotton_A_01182_CDS 58 232 58 234 PF02330.16 MAM33 Domain 1 210 212 62.6 5e-17 1 No_clan
Cotton_A_18062_CDS 107 151 105 152 PF00249.31 Myb_DNA-binding Domain 3 45 46 41.7 9.8e-11 1 CL0123
Cotton_A_07070_CDS 58 118 58 120 PF03641.14 Lysine_decarbox Family 1 61 132 56.2 3.8e-15 1 CL0349
Cotton_A_07070_CDS 143 213 129 213 PF03641.14 Lysine_decarbox Family 61 132 132 84.1 8.8e-24 1 CL0349
Cotton_A_04322_CDS 93 136 92 136 PF13639.6 zf-RING_2 Domain 2 44 44 55.2 6.4e-15 1 CL0229
Cotton_A_22509_CDS 26 60 14 65 PF06273.11 eIF-4B Family 258 294 502 38.6 6.8e-10 1 No_clan
Cotton_A_04423_CDS 48 201 45 204 PF01694.22 Rhomboid Family 4 147 150 91.0 6.9e-26 1 CL0207
Cotton_A_21323_CDS 42 102 42 102 PF02824.21 TGS Family 1 60 60 56.9 1.6e-15 1 CL0072
Cotton_A_21323_CDS 211 260 211 260 PF07973.14 tRNA_SAD Domain 1 44 44 46.2 3.5e-12 1 CL0094
Cotton_A_21323_CDS 361 570 359 570 PF00587.25 tRNA-synt_2b Domain 3 179 179 132.5 1.6e-38 1 CL0040
Cotton_A_21323_CDS 582 671 582 672 PF03129.20 HGTP_anticodon Domain 1 93 94 77.5 6.5e-22 1 CL0458
Cotton_A_19843_CDS 135 196 133 198 PF03108.15 DBD_Tnp_Mut Family 4 63 67 28.7 9.9e-07 1 CL0274
Cotton_A_00939_CDS 67 154 67 154 PF03330.18 DPBB_1 Domain 1 83 83 73.2 1.5e-20 1 CL0199
Cotton_A_00939_CDS 165 242 165 242 PF01357.21 Pollen_allerg_1 Domain 1 80 80 84.4 4.1e-24 1 CL0159
Cotton_A_28308_CDS 159 387 158 402 PF00931.22 NB-ARC Domain 2 236 252 228.0 1e-67 1 CL0023
Cotton_A_09016_CDS 160 206 153 209 PF13812.6 PPR_3 Repeat 12 58 63 22.0 0.00013 1 CL0020
Cotton_A_03649_CDS 130 177 128 177 PF00010.26 HLH Domain 4 53 53 32.9 4.7e-08 1 No_clan
Cotton_A_05243_CDS 37 107 29 112 PF00153.27 Mito_carr Family 13 91 97 45.0 7.5e-12 1 No_clan
Cotton_A_05243_CDS 125 212 121 215 PF00153.27 Mito_carr Family 5 93 97 74.9 3.6e-21 1 No_clan
Cotton_A_05243_CDS 237 327 232 328 PF00153.27 Mito_carr Family 6 96 97 65.8 2.5e-18 1 No_clan
Cotton_A_04413_CDS 11 270 9 303 PF03514.14 GRAS Family 3 274 374 70.9 9.3e-20 1 CL0063
Cotton_A_04413_CDS 638 714 636 716 PF02902.19 Peptidase_C48 Domain 84 163 216 25.2 1.3e-05 1 CL0125
Cotton_A_36936_CDS 116 136 116 136 PF13696.6 zf-CCHC_2 Domain 1 21 21 29.7 4.1e-07 1 CL0511
Cotton_A_20066_CDS 34 239 34 239 PF00804.25 Syntaxin Domain 1 200 200 230.9 1.1e-68 1 CL0445
Cotton_A_20066_CDS 241 292 240 292 PF05739.19 SNARE Family 2 53 53 63.5 1.3e-17 1 No_clan
Cotton_A_28137_CDS 1 246 1 246 PF04646.12 DUF604 Family 9 256 256 381.8 1.5e-114 1 CL0110
Cotton_A_19213_CDS 28 114 22 123 PF00651.31 BTB Domain 10 98 111 29.1 8.9e-07 1 CL0033
Cotton_A_19213_CDS 211 459 211 459 PF03000.14 NPH3 Family 1 258 258 285.9 3.1e-85 1 No_clan
Cotton_A_23226_CDS 13 108 13 114 PF15699.5 NPR1_interact Family 1 88 109 70.4 1.7e-19 1 No_clan
Cotton_A_18114_CDS 106 191 106 191 PF03330.18 DPBB_1 Domain 1 83 83 81.0 5.8e-23 1 CL0199
Cotton_A_18114_CDS 202 279 202 279 PF01357.21 Pollen_allerg_1 Domain 1 80 80 98.5 1.6e-28 1 CL0159
Cotton_A_29607_CDS 84 140 71 161 PF03007.16 WES_acyltransf Domain 105 165 264 30.3 3.3e-07 1 CL0149
Cotton_A_29607_CDS 288 433 288 433 PF06974.13 DUF1298 Family 1 145 145 151.9 1.1e-44 1 No_clan
Cotton_A_01663_CDS 354 620 351 622 PF07714.17 Pkinase_Tyr Domain 4 257 259 147.2 5.1e-43 1 CL0016
Cotton_A_08002_CDS 167 214 165 214 PF00010.26 HLH Domain 4 53 53 25.3 1.1e-05 1 No_clan
Cotton_A_28527_CDS 51 293 50 294 PF12146.8 Hydrolase_4 Family 2 238 239 193.7 2.9e-57 1 CL0028
Cotton_A_29371_CDS 15 239 15 239 PF00244.20 14-3-3 Domain 1 222 222 343.7 4e-103 1 No_clan
Cotton_A_16563_CDS 79 408 79 411 PF00295.17 Glyco_hydro_28 Domain 1 321 325 274.2 1.3e-81 1 CL0268
Cotton_A_06749_CDS 40 248 40 248 PF06764.11 DUF1223 Family 1 202 202 164.2 3.8e-48 1 CL0172
Cotton_A_38340_CDS 165 212 164 213 PF13041.6 PPR_2 Repeat 2 49 50 30.0 4.2e-07 1 CL0020
Cotton_A_38340_CDS 266 313 266 315 PF13041.6 PPR_2 Repeat 1 48 50 43.5 2.7e-11 1 CL0020
Cotton_A_38340_CDS 341 364 339 366 PF01535.20 PPR Family 3 26 31 15.2 0.019 1 CL0020
Cotton_A_38340_CDS 439 563 439 563 PF14432.6 DYW_deaminase Family 1 127 127 131.6 1.4e-38 1 CL0109
Cotton_A_01572_CDS 1 33 1 34 PF08263.12 LRRNT_2 Family 9 40 41 27.8 2.4e-06 1 No_clan
Cotton_A_01572_CDS 130 190 130 190 PF13855.6 LRR_8 Repeat 1 61 61 33.9 2e-08 1 CL0022
Cotton_A_01572_CDS 279 292 276 293 PF13516.6 LRR_6 Repeat 4 17 24 8.9 1.8 1 CL0022
Cotton_A_01572_CDS 375 434 374 434 PF13855.6 LRR_8 Repeat 2 61 61 34.7 1.1e-08 1 CL0022
Cotton_A_01572_CDS 543 602 542 602 PF13855.6 LRR_8 Repeat 2 61 61 31.2 1.3e-07 1 CL0022
Cotton_A_01572_CDS 614 674 614 674 PF13855.6 LRR_8 Repeat 1 61 61 30.7 2e-07 1 CL0022
Cotton_A_01572_CDS 812 1029 802 1059 PF00069.25 Pkinase Domain 11 221 264 116.1 1.7e-33 1 CL0016
Cotton_A_03252_CDS 39 69 25 69 PF00305.19 Lipoxygenase Domain 451 481 674 40.1 1.6e-10 1 No_clan
Cotton_A_21800_CDS 1 155 1 156 PF00407.19 Bet_v_1 Domain 1 150 151 80.3 1.3e-22 1 CL0209
Cotton_A_21861_CDS 5 39 1 56 PF17917.1 RT_RNaseH Domain 31 65 105 37.2 2.8e-09 1 CL0219
Cotton_A_35260_CDS 9 276 8 286 PF07992.14 Pyr_redox_2 Domain 2 286 294 129.5 1.4e-37 1 CL0063
Cotton_A_24331_CDS 135 230 115 232 PF00307.31 CH Domain 21 106 109 64.8 6.9e-18 1 CL0188
Cotton_A_24331_CDS 261 362 260 364 PF00307.31 CH Domain 2 107 109 75.7 2.8e-21 1 CL0188
Cotton_A_24331_CDS 387 489 385 491 PF00307.31 CH Domain 3 106 109 71.4 6.3e-20 1 CL0188
Cotton_A_24331_CDS 511 613 506 615 PF00307.31 CH Domain 6 107 109 66.9 1.5e-18 1 CL0188
Cotton_A_22851_CDS 122 192 122 192 PF00076.22 RRM_1 Domain 1 70 70 54.1 1e-14 1 CL0221
Cotton_A_22851_CDS 213 283 213 283 PF00076.22 RRM_1 Domain 1 70 70 78.0 3.5e-22 1 CL0221
Cotton_A_34671_CDS 57 480 20 483 PF00083.24 Sugar_tr Family 42 446 452 124.0 7.2e-36 1 CL0015
Cotton_A_14548_CDS 8 222 6 222 PF01596.17 Methyltransf_3 Domain 3 212 212 270.1 9.1e-81 1 CL0063
Cotton_A_32689_CDS 69 333 68 333 PF03381.15 CDC50 Family 2 280 280 301.0 9.1e-90 1 No_clan
Cotton_A_24553_CDS 3 94 2 120 PF18052.1 Rx_N Domain 2 84 93 81.8 3.2e-23 1 No_clan
Cotton_A_24553_CDS 181 349 179 354 PF00931.22 NB-ARC Domain 3 177 252 115.5 2.2e-33 1 CL0023
Cotton_A_01774_CDS 140 296 138 297 PF05142.12 DUF702 Family 3 149 150 209.9 2.4e-62 1 No_clan
Cotton_A_22388_CDS 29 83 29 83 PF01667.17 Ribosomal_S27e Family 1 55 55 92.3 1.1e-26 1 CL0167
Cotton_A_37047_CDS 14 40 14 40 PF13961.6 DUF4219 Domain 1 27 27 33.6 2.1e-08 1 CL0523
Cotton_A_37047_CDS 56 135 25 139 PF14223.6 Retrotran_gag_2 Family 50 127 138 52.6 3.5e-14 1 CL0523
Cotton_A_30838_CDS 39 111 32 117 PF04116.13 FA_hydroxylase Family 8 81 133 33.8 3.8e-08 1 No_clan
Cotton_A_36746_CDS 1 154 1 154 PF00407.19 Bet_v_1 Domain 1 151 151 83.5 1.4e-23 1 CL0209
Cotton_A_09949_CDS 100 156 99 156 PF00403.26 HMA Domain 2 62 62 45.7 6.6e-12 1 No_clan
Cotton_A_09949_CDS 180 285 176 310 PF00080.20 Sod_Cu Domain 6 124 142 66.5 2.7e-18 1 No_clan
Cotton_A_34258_CDS 8 37 2 37 PF00400.32 WD40 Repeat 8 36 38 17.3 0.0063 1 CL0186
Cotton_A_34258_CDS 46 85 45 85 PF00400.32 WD40 Repeat 2 38 38 22.6 0.00013 1 CL0186
Cotton_A_34258_CDS 95 131 92 132 PF00400.32 WD40 Repeat 4 37 38 15.4 0.026 1 CL0186
Cotton_A_34258_CDS 146 191 139 191 PF00400.32 WD40 Repeat 8 38 38 15.1 0.031 1 CL0186
Cotton_A_34258_CDS 206 240 199 241 PF00400.32 WD40 Repeat 8 37 38 14.2 0.06 1 CL0186
Cotton_A_03942_CDS 11 548 11 548 PF05918.11 API5 Family 1 519 519 736.0 2.5e-221 1 CL0020
Cotton_A_17104_CDS 65 234 65 255 PF03092.16 BT1 Family 1 172 524 147.2 4.6e-43 1 CL0015
Cotton_A_17104_CDS 280 465 251 472 PF03092.16 BT1 Family 293 506 524 188.9 1.1e-55 1 CL0015
Cotton_A_29228_CDS 140 199 140 199 PF13637.6 Ank_4 Repeat 1 55 55 48.2 1.1e-12 1 CL0465
Cotton_A_29228_CDS 271 364 267 377 PF13962.6 PGG Domain 6 97 116 34.8 1.1e-08 1 No_clan
Cotton_A_23819_CDS 153 259 151 260 PF01398.21 JAB Family 3 117 118 62.0 4.7e-17 1 CL0366
Cotton_A_31721_CDS 110 132 109 135 PF13540.6 RCC1_2 Repeat 3 25 30 25.8 6.7e-06 1 CL0186
Cotton_A_31721_CDS 230 259 230 259 PF13540.6 RCC1_2 Repeat 1 30 30 30.6 2e-07 1 CL0186
Cotton_A_31721_CDS 327 375 326 375 PF00415.18 RCC1 Repeat 2 50 50 41.7 1.3e-10 1 CL0186
Cotton_A_31721_CDS 378 429 378 429 PF00415.18 RCC1 Repeat 1 50 50 46.4 4.5e-12 1 CL0186
Cotton_A_31721_CDS 432 480 432 480 PF00415.18 RCC1 Repeat 1 50 50 49.1 6.4e-13 1 CL0186
Cotton_A_00585_CDS 5 376 3 376 PF00022.19 Actin Family 3 407 407 495.2 1.1e-148 1 CL0108
Cotton_A_25111_CDS 7 87 5 127 PF18052.1 Rx_N Domain 3 83 93 74.8 4.9e-21 1 No_clan
Cotton_A_25111_CDS 188 382 139 384 PF00931.22 NB-ARC Domain 58 250 252 148.2 2.3e-43 1 CL0023
Cotton_A_23409_CDS 57 404 57 404 PF01264.21 Chorismate_synt Family 1 327 327 465.5 6.6e-140 1 No_clan
Cotton_A_06277_CDS 2 65 1 65 PF03321.13 GH3 Family 462 527 527 53.7 1.6e-14 1 CL0378
Cotton_A_02297_CDS 90 267 90 271 PF14543.6 TAXi_N Domain 1 172 178 99.2 3.2e-28 1 CL0129
Cotton_A_02297_CDS 301 463 301 464 PF14541.6 TAXi_C Domain 1 160 161 117.5 4.6e-34 1 CL0129
Cotton_A_21664_CDS 70 175 70 175 PF01453.24 B_lectin Domain 1 105 105 126.8 4.4e-37 1 No_clan
Cotton_A_21664_CDS 208 316 207 317 PF00954.20 S_locus_glycop Domain 2 110 111 90.3 1.1e-25 1 No_clan
Cotton_A_21664_CDS 338 404 338 404 PF08276.11 PAN_2 Domain 1 67 67 78.5 3.1e-22 1 CL0168
Cotton_A_21664_CDS 500 672 499 679 PF00069.25 Pkinase Domain 2 168 264 136.6 9.8e-40 1 CL0016
Cotton_A_21664_CDS 736 777 733 777 PF11883.8 DUF3403 Family 5 46 46 33.0 4.8e-08 1 No_clan
Cotton_A_14494_CDS 95 384 95 384 PF08392.12 FAE1_CUT1_RppA Family 1 290 290 470.8 1.5e-141 1 CL0046
Cotton_A_14494_CDS 401 481 398 482 PF08541.10 ACP_syn_III_C Domain 12 89 90 39.9 3.5e-10 1 CL0046
Cotton_A_00031_CDS 112 329 95 339 PF00501.28 AMP-binding Family 17 245 423 169.4 9.5e-50 1 CL0378
Cotton_A_08740_CDS 203 276 202 276 PF07572.12 BCNT Family 2 75 75 86.5 9.2e-25 1 No_clan
Cotton_A_19889_CDS 91 140 89 140 PF00847.20 AP2 Domain 3 54 54 54.3 1.1e-14 1 CL0081
Cotton_A_23809_CDS 68 96 68 98 PF01535.20 PPR Family 1 29 31 23.6 3.9e-05 1 CL0020
Cotton_A_23809_CDS 104 133 103 133 PF01535.20 PPR Family 2 31 31 11.7 0.25 1 CL0020
Cotton_A_23809_CDS 167 215 166 215 PF13041.6 PPR_2 Repeat 2 50 50 39.7 4.2e-10 1 CL0020
Cotton_A_23809_CDS 271 297 271 299 PF01535.20 PPR Family 1 27 31 19.9 0.00059 1 CL0020
Cotton_A_23809_CDS 345 366 345 371 PF01535.20 PPR Family 4 25 31 11.6 0.27 1 CL0020
Cotton_A_23809_CDS 374 403 373 403 PF01535.20 PPR Family 2 31 31 11.1 0.38 1 CL0020
Cotton_A_23809_CDS 473 520 473 522 PF13041.6 PPR_2 Repeat 1 48 50 36.9 3.1e-09 1 CL0020
Cotton_A_23809_CDS 548 569 547 572 PF01535.20 PPR Family 3 24 31 11.6 0.27 1 CL0020
Cotton_A_01444_CDS 131 225 108 248 PF03018.14 Dirigent Family 33 129 148 90.5 8.4e-26 1 CL0650
Cotton_A_24755_CDS 129 239 128 239 PF02847.17 MA3 Family 2 113 113 89.1 1.8e-25 1 CL0020
Cotton_A_24755_CDS 293 403 292 403 PF02847.17 MA3 Family 2 113 113 96.6 8.7e-28 1 CL0020
Cotton_A_24755_CDS 427 536 426 537 PF02847.17 MA3 Family 2 112 113 90.5 6.7e-26 1 CL0020
Cotton_A_24755_CDS 590 696 589 697 PF02847.17 MA3 Family 2 111 113 93.0 1.1e-26 1 CL0020
Cotton_A_16898_CDS 41 125 40 127 PF00564.24 PB1 Domain 2 82 84 62.8 2.2e-17 1 CL0072
Cotton_A_16898_CDS 810 1072 809 1072 PF07714.17 Pkinase_Tyr Domain 2 259 259 202.6 6.5e-60 1 CL0016
Cotton_A_25193_CDS 44 260 44 262 PF02167.15 Cytochrom_C1 Family 1 217 219 323.9 5.2e-97 1 CL0318
Cotton_A_26580_CDS 168 324 166 327 PF01694.22 Rhomboid Family 3 147 150 95.2 3.7e-27 1 CL0207
Cotton_A_21197_CDS 1 82 1 84 PF09598.10 Stm1_N Family 1 64 65 53.6 2.9e-14 1 No_clan
Cotton_A_21197_CDS 153 260 153 260 PF04774.15 HABP4_PAI-RBP1 Family 1 116 116 97.6 7.8e-28 1 No_clan
Cotton_A_34286_CDS 64 109 62 109 PF00643.24 zf-B_box Domain 3 42 42 29.3 7e-07 1 No_clan
Cotton_A_34286_CDS 292 334 292 335 PF06203.14 CCT Motif 1 43 44 63.8 1.1e-17 1 CL0281
Cotton_A_00751_CDS 147 232 147 232 PF04433.17 SWIRM Domain 1 89 89 64.8 6.7e-18 1 CL0123
Cotton_A_00751_CDS 308 343 306 347 PF00569.17 ZZ Domain 4 39 45 33.8 2.2e-08 1 CL0006
Cotton_A_00751_CDS 366 408 365 410 PF00249.31 Myb_DNA-binding Domain 2 44 46 46.6 2.9e-12 1 CL0123
Cotton_A_00751_CDS 872 949 871 954 PF16495.5 SWIRM-assoc_1 Family 2 79 84 84.7 3.2e-24 1 No_clan
Cotton_A_22145_CDS 47 85 46 86 PF08263.12 LRRNT_2 Family 2 40 41 43.7 2.5e-11 1 No_clan
Cotton_A_04775_CDS 24 92 16 93 PF01190.17 Pollen_Ole_e_I Family 22 97 99 23.8 4.4e-05 1 CL0287
Cotton_A_31507_CDS 1 52 1 52 PF00281.19 Ribosomal_L5 Domain 3 57 57 70.6 1e-19 1 CL0652
Cotton_A_31507_CDS 56 154 56 154 PF00673.21 Ribosomal_L5_C Domain 1 94 94 72.9 1.8e-20 1 No_clan
Cotton_A_06041_CDS 44 91 44 91 PF00249.31 Myb_DNA-binding Domain 1 46 46 61.3 7.5e-17 1 CL0123
Cotton_A_06041_CDS 97 142 97 142 PF00249.31 Myb_DNA-binding Domain 1 46 46 52.9 3e-14 1 CL0123
Cotton_A_28250_CDS 203 226 201 228 PF13833.6 EF-hand_8 Domain 30 53 55 18.1 0.0017 1 CL0220
Cotton_A_28250_CDS 238 259 236 259 PF13202.6 EF-hand_5 Domain 4 25 25 11.8 0.13 1 CL0220
Cotton_A_28250_CDS 405 455 404 456 PF13833.6 EF-hand_8 Domain 3 54 55 35.4 7.2e-09 1 CL0220
Cotton_A_06211_CDS 152 199 148 204 PF03909.17 BSD Domain 5 53 58 42.2 5.8e-11 1 No_clan
Cotton_A_02950_CDS 73 350 54 352 PF10250.9 O-FucT Family 74 334 336 60.6 2e-16 1 CL0113
Cotton_A_07332_CDS 15 155 15 155 PF05512.11 AWPM-19 Family 1 142 142 187.5 1.3e-55 1 No_clan
Cotton_A_16921_CDS 235 287 225 287 PF13812.6 PPR_3 Repeat 11 63 63 54.7 7.7e-15 1 CL0020
Cotton_A_16921_CDS 304 334 304 336 PF12854.7 PPR_1 Repeat 1 31 34 24.6 1.5e-05 1 CL0020
Cotton_A_16921_CDS 343 384 343 384 PF13041.6 PPR_2 Repeat 1 42 50 39.1 6.5e-10 1 CL0020
Cotton_A_16921_CDS 402 462 401 463 PF13812.6 PPR_3 Repeat 2 62 63 66.5 1.6e-18 1 CL0020
Cotton_A_16921_CDS 483 530 483 532 PF13041.6 PPR_2 Repeat 1 48 50 39.1 6.1e-10 1 CL0020
Cotton_A_16921_CDS 553 602 553 602 PF13041.6 PPR_2 Repeat 1 50 50 46.0 4.5e-12 1 CL0020
Cotton_A_16921_CDS 648 705 646 708 PF13812.6 PPR_3 Repeat 3 60 63 39.2 5.6e-10 1 CL0020
Cotton_A_16921_CDS 725 757 724 757 PF12854.7 PPR_1 Repeat 2 34 34 47.4 1.1e-12 1 CL0020
Cotton_A_16921_CDS 763 812 763 812 PF13041.6 PPR_2 Repeat 1 50 50 43.9 2.1e-11 1 CL0020
Cotton_A_28112_CDS 6 91 5 100 PF12796.7 Ank_2 Repeat 2 73 83 34.6 2.1e-08 1 CL0465
Cotton_A_28112_CDS 109 216 109 217 PF12796.7 Ank_2 Repeat 1 82 83 36.6 5e-09 1 CL0465
Cotton_A_05978_CDS 21 156 18 158 PF03208.19 PRA1 Family 5 140 143 159.4 4.2e-47 1 No_clan
Cotton_A_13652_CDS 9 89 9 118 PF14226.6 DIOX_N Family 1 79 118 37.5 3.3e-09 1 CL0029
Cotton_A_13652_CDS 166 261 161 261 PF03171.20 2OG-FeII_Oxy Domain 5 101 101 66.9 1.8e-18 1 CL0029
Cotton_A_28280_CDS 120 363 39 366 PF00933.21 Glyco_hydro_3 Domain 85 314 319 127.0 9.6e-37 1 CL0058
Cotton_A_28280_CDS 409 638 409 638 PF01915.22 Glyco_hydro_3_C Domain 1 204 204 179.0 1.1e-52 1 No_clan
Cotton_A_28280_CDS 701 767 700 768 PF14310.6 Fn3-like Family 2 69 71 38.2 1.2e-09 1 CL0159
Cotton_A_23726_CDS 90 178 75 180 PF13616.6 Rotamase_3 Domain 15 114 116 59.5 4.2e-16 1 CL0487
Cotton_A_23726_CDS 190 286 189 288 PF00581.20 Rhodanese Domain 2 105 107 33.3 5.3e-08 1 CL0031
Cotton_A_39743_CDS 34 239 34 239 PF00804.25 Syntaxin Domain 1 200 200 223.1 2.6e-66 1 CL0445
Cotton_A_39743_CDS 240 292 240 292 PF05739.19 SNARE Family 1 53 53 61.6 5e-17 1 No_clan
Cotton_A_05137_CDS 260 293 260 295 PF00320.27 GATA Domain 1 34 36 61.3 4.8e-17 1 CL0167
Cotton_A_01364_CDS 85 238 82 251 PF07714.17 Pkinase_Tyr Domain 4 155 259 104.4 5.7e-30 1 CL0016
Cotton_A_01364_CDS 500 614 488 616 PF00069.25 Pkinase Domain 153 260 264 32.8 4.3e-08 1 CL0016
Cotton_A_12590_CDS 5 177 5 177 PF00025.21 Arf Domain 1 175 175 267.7 3.2e-80 1 CL0023
Cotton_A_38141_CDS 126 291 125 291 PF04727.13 ELMO_CED12 Family 2 177 177 167.4 3.2e-49 1 No_clan
Cotton_A_38911_CDS 37 184 34 184 PF04043.15 PMEI Domain 5 154 154 64.2 1.6e-17 1 No_clan
Cotton_A_38911_CDS 250 548 249 548 PF01095.19 Pectinesterase Family 2 298 298 452.3 4.8e-136 1 CL0268
Cotton_A_00178_CDS 2 111 1 114 PF04199.13 Cyclase Family 19 129 136 61.8 7.5e-17 1 CL0364
Cotton_A_17343_CDS 31 135 30 135 PF13947.6 GUB_WAK_bind Domain 2 106 106 98.8 2.7e-28 1 No_clan
Cotton_A_17343_CDS 167 260 167 271 PF08488.11 WAK Family 1 90 103 25.4 1.6e-05 1 No_clan
Cotton_A_21317_CDS 30 398 30 399 PF12819.7 Malectin_like Domain 1 335 336 119.9 1.3e-34 1 CL0202
Cotton_A_21317_CDS 490 754 486 754 PF07714.17 Pkinase_Tyr Domain 6 259 259 163.6 5.3e-48 1 CL0016
Cotton_A_05553_CDS 4 133 4 134 PF04099.12 Sybindin Family 1 142 143 182.7 3.3e-54 1 CL0212
Cotton_A_15845_CDS 100 158 78 158 PF00230.20 MIP Family 172 227 227 39.8 4.1e-10 1 No_clan
Cotton_A_32764_CDS 53 141 49 141 PF00254.28 FKBP_C Domain 5 94 94 118.2 1.5e-34 1 CL0487
Cotton_A_32764_CDS 168 258 165 258 PF00254.28 FKBP_C Domain 4 94 94 59.7 2.6e-16 1 CL0487
Cotton_A_32764_CDS 283 379 282 379 PF00254.28 FKBP_C Domain 2 94 94 77.2 9e-22 1 CL0487
Cotton_A_32764_CDS 482 515 482 515 PF00515.28 TPR_1 Repeat 1 34 34 28.8 7.2e-07 1 CL0020
Cotton_A_22597_CDS 17 60 17 66 PF02892.15 zf-BED Domain 1 41 44 33.3 3.7e-08 1 CL0361
Cotton_A_22597_CDS 420 519 420 519 PF14372.6 DUF4413 Family 1 100 100 118.2 1.7e-34 1 No_clan
Cotton_A_22597_CDS 567 649 567 649 PF05699.14 Dimer_Tnp_hAT Domain 1 86 86 94.5 2.5e-27 1 No_clan
Cotton_A_04116_CDS 58 314 58 314 PF00685.27 Sulfotransfer_1 Domain 1 267 267 210.2 3.7e-62 1 CL0023
Cotton_A_26414_CDS 58 342 58 342 PF01545.21 Cation_efflux Family 1 199 199 159.6 7.7e-47 1 No_clan
Cotton_A_40484_CDS 54 111 53 111 PF03106.15 WRKY Domain 2 59 59 87.4 5.3e-25 1 CL0274
Cotton_A_07360_CDS 21 121 20 136 PF00501.28 AMP-binding Family 2 106 423 62.7 2.3e-17 1 CL0378
Cotton_A_03048_CDS 116 196 116 196 PF07915.13 PRKCSH Family 1 81 81 63.1 3.6e-17 1 CL0226
Cotton_A_15327_CDS 13 50 13 52 PF01428.16 zf-AN1 Family 1 38 40 47.9 1e-12 1 No_clan
Cotton_A_15327_CDS 101 141 101 142 PF01428.16 zf-AN1 Family 1 39 40 32.2 8.9e-08 1 No_clan
Cotton_A_24849_CDS 195 244 193 254 PF13812.6 PPR_3 Repeat 4 53 63 17.4 0.0034 1 CL0020
Cotton_A_24849_CDS 483 523 476 528 PF13812.6 PPR_3 Repeat 18 58 63 17.4 0.0036 1 CL0020
Cotton_A_24849_CDS 552 580 551 581 PF01535.20 PPR Family 2 30 31 13.2 0.082 1 CL0020
Cotton_A_34185_CDS 6 221 4 221 PF05019.13 Coq4 Family 4 221 221 277.1 7.9e-83 1 No_clan
Cotton_A_36838_CDS 58 193 58 198 PF01936.18 NYN Domain 1 140 147 94.7 7e-27 1 CL0280
Cotton_A_36838_CDS 262 328 260 329 PF12872.7 OST-HTH Domain 3 71 72 40.0 2.6e-10 1 CL0123
Cotton_A_36838_CDS 628 684 622 691 PF14418.6 OHA Domain 9 65 77 27.9 1.5e-06 1 No_clan
Cotton_A_36838_CDS 751 808 747 809 PF12872.7 OST-HTH Domain 5 64 72 27.3 2.3e-06 1 CL0123
Cotton_A_23789_CDS 32 392 32 393 PF04864.13 Alliinase_C Domain 1 362 363 506.4 3.8e-152 1 CL0061
Cotton_A_27903_CDS 88 153 87 163 PF00044.24 Gp_dh_N Domain 2 66 101 49.1 5.6e-13 1 CL0063
Cotton_A_27903_CDS 126 278 123 278 PF02800.20 Gp_dh_C Domain 6 158 158 221.3 4.6e-66 1 CL0139
Cotton_A_04219_CDS 38 432 38 433 PF06136.13 DUF966 Family 1 376 377 483.0 9.9e-145 1 No_clan
Cotton_A_07714_CDS 6 49 6 50 PF15054.6 DUF4535 Family 1 44 45 70.9 5.3e-20 1 No_clan
Cotton_A_00014_CDS 23 203 7 228 PF00378.20 ECH_1 Domain 20 191 251 68.9 4.1e-19 1 CL0127
Cotton_A_10474_CDS 34 495 34 499 PF00067.22 p450 Domain 1 459 463 389.5 2e-116 1 No_clan
Cotton_A_08169_CDS 29 105 19 106 PF03501.15 S10_plectin Domain 16 92 93 124.2 1.7e-36 1 CL0123
Cotton_A_32081_CDS 234 280 234 280 PF01344.25 Kelch_1 Repeat 1 46 46 31.9 7.3e-08 1 CL0186
Cotton_A_32081_CDS 282 327 282 328 PF01344.25 Kelch_1 Repeat 1 45 46 32.9 3.6e-08 1 CL0186
Cotton_A_21597_CDS 208 355 207 362 PF12214.8 TPX2_importin Family 2 158 166 133.1 1.1e-38 1 No_clan
Cotton_A_15948_CDS 28 71 28 71 PF03470.14 zf-XS Domain 1 43 43 74.8 4.7e-21 1 No_clan
Cotton_A_15948_CDS 105 217 105 217 PF03468.14 XS Domain 1 113 113 133.1 4.9e-39 1 CL0221
Cotton_A_15948_CDS 490 622 490 622 PF03469.14 XH Domain 1 131 131 175.8 3.3e-52 1 No_clan
Cotton_A_06363_CDS 47 185 46 190 PF01936.18 NYN Domain 2 140 147 95.9 3e-27 1 CL0280
Cotton_A_06363_CDS 314 378 310 379 PF12872.7 OST-HTH Domain 6 71 72 36.0 4.6e-09 1 CL0123
Cotton_A_06363_CDS 441 504 439 509 PF12872.7 OST-HTH Domain 3 67 72 28.3 1.1e-06 1 CL0123
Cotton_A_20503_CDS 10 55 10 56 PF12554.8 MOZART1 Family 1 46 47 72.3 1.9e-20 1 No_clan
Cotton_A_00579_CDS 252 432 252 445 PF13086.6 AAA_11 Domain 1 119 261 103.6 1.5e-29 1 CL0023
Cotton_A_00579_CDS 440 521 433 522 PF13086.6 AAA_11 Domain 179 260 261 109.1 3.1e-31 1 CL0023
Cotton_A_00579_CDS 529 725 529 726 PF13087.6 AAA_12 Domain 1 198 199 214.7 9.6e-64 1 CL0023
Cotton_A_26269_CDS 10 56 9 58 PF00249.31 Myb_DNA-binding Domain 2 43 46 24.7 2e-05 1 CL0123
Cotton_A_26269_CDS 111 155 109 156 PF00249.31 Myb_DNA-binding Domain 3 45 46 44.4 1.4e-11 1 CL0123
Cotton_A_17892_CDS 5 409 1 410 PF03635.17 Vps35 Family 332 729 730 381.3 1e-113 1 No_clan
Cotton_A_12364_CDS 94 512 11 518 PF07779.12 Cas1_AcylT Domain 61 468 474 333.9 1.7e-99 1 CL0316
Cotton_A_06736_CDS 64 237 50 240 PF07970.12 COPIIcoated_ERV Family 47 217 221 94.1 1.1e-26 1 No_clan
Cotton_A_06330_CDS 117 229 117 232 PF08241.12 Methyltransf_11 Domain 1 93 96 82.4 2.8e-23 1 CL0063
Cotton_A_12695_CDS 62 218 62 218 PF04759.13 DUF617 Family 1 163 163 221.8 5e-66 1 No_clan
Cotton_A_07430_CDS 308 345 307 345 PF00400.32 WD40 Repeat 2 38 38 23.1 9.3e-05 1 CL0186
Cotton_A_21221_CDS 160 444 160 445 PF12697.7 Abhydrolase_6 Domain 1 217 220 71.9 1.1e-19 1 CL0028
Cotton_A_03180_CDS 16 79 7 104 PF02519.14 Auxin_inducible Family 1 60 90 35.1 1.1e-08 1 No_clan
Cotton_A_01585_CDS 37 476 37 495 PF00067.22 p450 Domain 1 441 463 185.0 2.1e-54 1 No_clan
Cotton_A_15841_CDS 1 139 1 139 PF11960.8 DUF3474 Family 1 135 135 152.4 7.7e-45 1 No_clan
Cotton_A_15841_CDS 149 374 120 374 PF00487.24 FA_desaturase Domain 2 220 254 74.9 8.8e-21 1 No_clan
Cotton_A_08262_CDS 108 321 108 322 PF07859.13 Abhydrolase_3 Domain 1 210 211 201.3 1.6e-59 1 CL0028
Cotton_A_02215_CDS 57 223 35 259 PF00704.28 Glyco_hydro_18 Domain 24 192 312 68.4 8.5e-19 1 CL0058
Cotton_A_26914_CDS 36 232 36 253 PF00067.22 p450 Domain 1 196 463 74.4 7.4e-21 1 No_clan
Cotton_A_30632_CDS 59 136 59 143 PF01715.17 IPPT Domain 1 77 228 72.9 3.3e-20 1 CL0023
Cotton_A_30632_CDS 142 239 133 249 PF01715.17 IPPT Domain 140 221 228 48.9 6.9e-13 1 CL0023
Cotton_A_00325_CDS 21 224 20 261 PF00557.24 Peptidase_M24 Domain 2 188 209 98.6 3.7e-28 1 No_clan
Cotton_A_18388_CDS 38 76 38 94 PF05703.11 Auxin_canalis Family 1 43 256 44.9 1.4e-11 1 No_clan
Cotton_A_18388_CDS 94 244 74 245 PF05703.11 Auxin_canalis Family 107 255 256 165.2 2.5e-48 1 No_clan
Cotton_A_18388_CDS 269 372 269 373 PF08458.10 PH_2 Family 1 104 105 142.3 5.9e-42 1 CL0266
Cotton_A_01105_CDS 11 122 11 127 PF06094.12 GGACT Family 1 120 121 80.3 1.6e-22 1 CL0278
Cotton_A_29507_CDS 146 310 145 311 PF00270.29 DEAD Domain 2 175 176 149.6 7.3e-44 1 CL0023
Cotton_A_29507_CDS 347 453 344 453 PF00271.31 Helicase_C Family 4 111 111 97.3 6.5e-28 1 CL0023
Cotton_A_25592_CDS 356 396 354 397 PF00514.23 Arm Repeat 3 40 41 30.9 1.9e-07 1 CL0020
Cotton_A_25592_CDS 442 480 441 481 PF00514.23 Arm Repeat 2 40 41 24.0 2.8e-05 1 CL0020
Cotton_A_14270_CDS 173 404 169 406 PF04884.14 DUF647 Family 6 239 241 242.9 3.6e-72 1 No_clan
Cotton_A_14785_CDS 190 456 189 460 PF00069.25 Pkinase Domain 2 258 264 163.5 6.1e-48 1 CL0016
Cotton_A_01544_CDS 32 87 30 88 PF00403.26 HMA Domain 3 61 62 50.8 1.7e-13 1 No_clan
Cotton_A_18016_CDS 164 434 143 452 PF00481.21 PP2C Family 28 237 258 121.5 4.6e-35 1 CL0238
Cotton_A_03671_CDS 105 192 101 195 PF08585.12 RMI1_N Domain 6 95 217 54.3 1.4e-14 1 CL0021
Cotton_A_03671_CDS 193 267 187 269 PF08585.12 RMI1_N Domain 139 214 217 69.4 3.7e-19 1 CL0021
Cotton_A_03671_CDS 414 555 412 555 PF16099.5 RMI1_C Family 3 143 143 129.7 7.1e-38 1 CL0021
Cotton_A_38874_CDS 227 274 225 274 PF00010.26 HLH Domain 4 53 53 27.7 1.9e-06 1 No_clan
Cotton_A_15776_CDS 22 101 16 103 PF00153.27 Mito_carr Family 10 94 97 63.4 1.4e-17 1 No_clan
Cotton_A_15776_CDS 111 194 106 196 PF00153.27 Mito_carr Family 6 94 97 60.7 9.4e-17 1 No_clan
Cotton_A_14417_CDS 37 150 36 152 PF07732.15 Cu-oxidase_3 Domain 2 117 119 130.1 4e-38 1 CL0026
Cotton_A_14417_CDS 162 313 162 314 PF00394.22 Cu-oxidase Domain 1 158 159 132.4 1.5e-38 1 CL0026
Cotton_A_14417_CDS 435 551 416 552 PF07731.14 Cu-oxidase_2 Domain 23 136 137 125.8 9.7e-37 1 CL0026
Cotton_A_09342_CDS 79 336 76 336 PF00069.25 Pkinase Domain 4 264 264 231.3 1.2e-68 1 CL0016
Cotton_A_33447_CDS 70 338 68 344 PF00069.25 Pkinase Domain 3 258 264 147.8 3.6e-43 1 CL0016
Cotton_A_28300_CDS 3 27 3 32 PF00641.18 zf-RanBP Domain 1 25 30 17.3 0.0021 1 CL0167
Cotton_A_28300_CDS 48 75 48 78 PF00641.18 zf-RanBP Domain 1 26 30 28.6 6.3e-07 1 CL0167
Cotton_A_28300_CDS 102 132 102 132 PF00641.18 zf-RanBP Domain 1 29 30 37.5 1e-09 1 CL0167
Cotton_A_24361_CDS 202 364 202 365 PF01764.25 Lipase_3 Family 1 141 142 128.9 1.3e-37 1 CL0028
Cotton_A_00275_CDS 86 480 85 481 PF05028.14 PARG_cat Family 2 336 337 449.5 7.7e-135 1 CL0223
Cotton_A_21630_CDS 23 260 23 260 PF13561.6 adh_short_C2 Domain 1 234 234 218.2 1.1e-64 1 CL0063
Cotton_A_12637_CDS 84 291 84 292 PF00566.18 RabGAP-TBC Family 1 214 215 191.0 2e-56 1 No_clan
Cotton_A_36364_CDS 131 160 130 160 PF01535.20 PPR Family 2 31 31 13.5 0.067 1 CL0020
Cotton_A_36364_CDS 162 207 162 210 PF13041.6 PPR_2 Repeat 1 47 50 45.9 4.7e-12 1 CL0020
Cotton_A_36364_CDS 227 259 227 260 PF12854.7 PPR_1 Repeat 1 33 34 48.3 6e-13 1 CL0020
Cotton_A_36364_CDS 270 299 269 299 PF01535.20 PPR Family 2 31 31 17.8 0.0028 1 CL0020
Cotton_A_36364_CDS 302 348 301 350 PF13041.6 PPR_2 Repeat 2 48 50 54.4 1.1e-14 1 CL0020
Cotton_A_36364_CDS 354 461 346 475 PF17177.4 PPR_long Domain 71 179 212 42.5 4.7e-11 1 CL0020
Cotton_A_26046_CDS 11 96 9 108 PF02362.21 B3 Family 3 89 101 33.2 3.7e-08 1 CL0405
Cotton_A_17078_CDS 71 279 69 279 PF00230.20 MIP Family 6 227 227 172.3 1.3e-50 1 No_clan
Cotton_A_20981_CDS 88 163 86 164 PF00533.26 BRCT Family 3 78 79 34.4 2.2e-08 1 CL0459
Cotton_A_20981_CDS 387 533 387 534 PF00817.20 IMS Family 1 149 150 154.2 2.4e-45 1 No_clan
Cotton_A_20981_CDS 625 747 623 750 PF11799.8 IMS_C Domain 7 114 118 50.8 2.4e-13 1 No_clan
Cotton_A_11312_CDS 44 105 44 106 PF00462.24 Glutaredoxin Domain 1 59 60 39.1 6.3e-10 1 CL0172
Cotton_A_32112_CDS 155 357 152 373 PF07714.17 Pkinase_Tyr Domain 4 211 259 146.4 9.2e-43 1 CL0016
Cotton_A_02397_CDS 43 148 34 150 PF04178.12 Got1 Family 5 111 113 117.8 3.1e-34 1 No_clan
Cotton_A_21782_CDS 87 144 75 147 PF08512.12 Rtt106 Domain 31 84 89 27.4 3.2e-06 1 CL0266
Cotton_A_38984_CDS 190 400 190 405 PF13632.6 Glyco_trans_2_3 Domain 1 192 197 80.1 2e-22 1 CL0110
Cotton_A_20063_CDS 18 99 13 107 PF00011.21 HSP20 Family 6 95 102 34.3 2e-08 1 CL0190
Cotton_A_38144_CDS 3 213 3 214 PF00091.25 Tubulin Domain 1 196 197 226.0 4.9e-67 1 CL0566
Cotton_A_38144_CDS 263 392 263 393 PF03953.17 Tubulin_C Domain 1 125 126 171.8 6.3e-51 1 CL0442
Cotton_A_02289_CDS 31 69 29 70 PF08263.12 LRRNT_2 Family 3 40 41 27.3 3.3e-06 1 No_clan
Cotton_A_02289_CDS 100 155 96 155 PF13855.6 LRR_8 Repeat 5 61 61 27.1 2.6e-06 1 CL0022
Cotton_A_02289_CDS 331 366 328 366 PF08263.12 LRRNT_2 Family 4 41 41 30.6 3e-07 1 No_clan
Cotton_A_02289_CDS 610 881 607 883 PF07714.17 Pkinase_Tyr Domain 4 257 259 157.1 5.1e-46 1 CL0016
Cotton_A_35119_CDS 1 154 1 154 PF00407.19 Bet_v_1 Domain 1 151 151 72.0 4.8e-20 1 CL0209
Cotton_A_27501_CDS 118 340 118 343 PF07002.16 Copine Family 1 215 218 235.6 4.3e-70 1 CL0128
Cotton_A_02412_CDS 150 207 149 207 PF03106.15 WRKY Domain 2 59 59 90.0 8.2e-26 1 CL0274
Cotton_A_17434_CDS 43 370 33 377 PF00295.17 Glyco_hydro_28 Domain 8 320 325 265.4 6.1e-79 1 CL0268
Cotton_A_09664_CDS 31 286 29 286 PF00069.25 Pkinase Domain 4 264 264 171.3 2.6e-50 1 CL0016
Cotton_A_09664_CDS 335 390 333 390 PF12202.8 OSR1_C Domain 3 64 64 27.7 2.3e-06 1 CL0487
Cotton_A_34234_CDS 71 170 69 179 PF02431.15 Chalcone Domain 3 103 203 28.8 7.3e-07 1 CL0560
Cotton_A_21020_CDS 87 273 86 273 PF04669.13 Polysacc_synt_4 Family 2 190 190 246.1 1.9e-73 1 No_clan
Cotton_A_40933_CDS 57 200 57 200 PF00005.27 ABC_tran Domain 1 137 137 103.0 1.8e-29 1 CL0023
Cotton_A_40933_CDS 328 536 326 536 PF01061.24 ABC2_membrane Family 3 210 210 152.0 1.5e-44 1 CL0181
Cotton_A_21066_CDS 36 100 35 100 PF00808.23 CBFD_NFYB_HMF Domain 2 65 65 99.1 1.2e-28 1 CL0012
Cotton_A_10987_CDS 153 385 153 432 PF00069.25 Pkinase Domain 1 212 264 55.0 7.7e-15 1 CL0016
Cotton_A_35183_CDS 2 182 1 193 PF01928.21 CYTH Domain 3 166 179 82.0 4.8e-23 1 CL0273
Cotton_A_35183_CDS 321 380 320 380 PF13855.6 LRR_8 Repeat 2 60 61 31.3 1.3e-07 1 CL0022
Cotton_A_00183_CDS 220 345 220 346 PF02365.15 NAM Family 1 125 126 106.1 2.3e-30 1 No_clan
Cotton_A_20737_CDS 152 239 152 240 PF00855.17 PWWP Domain 1 95 96 72.4 3e-20 1 CL0049
Cotton_A_14160_CDS 73 176 73 177 PF14380.6 WAK_assoc Domain 1 103 104 69.6 3.3e-19 1 No_clan
Cotton_A_14160_CDS 274 541 272 543 PF00069.25 Pkinase Domain 4 260 264 167.9 2.7e-49 1 CL0016
Cotton_A_32827_CDS 69 174 66 193 PF12146.8 Hydrolase_4 Family 6 113 239 28.8 6.7e-07 1 CL0028
Cotton_A_16093_CDS 106 423 105 424 PF00490.21 ALAD Domain 2 316 317 447.1 3.1e-134 1 CL0036
Cotton_A_34805_CDS 94 246 94 247 PF00005.27 ABC_tran Domain 1 136 137 75.8 4.6e-21 1 CL0023
Cotton_A_34805_CDS 413 624 413 624 PF01061.24 ABC2_membrane Family 1 210 210 142.9 8.6e-42 1 CL0181
Cotton_A_10972_CDS 38 101 15 103 PF00887.19 ACBP Domain 19 82 85 65.1 4.9e-18 1 CL0632
Cotton_A_10972_CDS 183 216 183 216 PF13854.6 Kelch_5 Repeat 1 36 42 24.7 1.7e-05 1 CL0186
Cotton_A_10972_CDS 294 341 292 342 PF13415.6 Kelch_3 Domain 3 48 49 38.0 1.3e-09 1 CL0186
Cotton_A_10972_CDS 345 393 344 393 PF13415.6 Kelch_3 Domain 2 49 49 41.7 9.8e-11 1 CL0186
Cotton_A_29862_CDS 26 338 26 338 PF01869.20 BcrAD_BadFG Family 1 267 267 185.1 1.7e-54 1 CL0108
Cotton_A_35280_CDS 113 174 113 175 PF02148.19 zf-UBP Domain 1 63 64 52.6 4.2e-14 1 CL0229
Cotton_A_35280_CDS 214 545 214 545 PF00443.29 UCH Family 1 257 257 129.0 2.1e-37 1 CL0125
Cotton_A_37979_CDS 29 114 29 114 PF05922.16 Inhibitor_I9 Domain 1 82 82 51.4 1.3e-13 1 CL0570
Cotton_A_37979_CDS 142 598 142 617 PF00082.22 Peptidase_S8 Domain 1 287 298 149.8 9.8e-44 1 No_clan
Cotton_A_37979_CDS 403 473 382 474 PF02225.22 PA Family 9 88 89 40.5 2.1e-10 1 CL0364
Cotton_A_37979_CDS 587 670 576 670 PF17766.1 fn3_6 Domain 16 99 99 79.9 1.2e-22 1 CL0159
Cotton_A_38324_CDS 124 525 124 526 PF01384.20 PHO4 Family 1 336 337 340.4 9.9e-102 1 No_clan
Cotton_A_10205_CDS 96 133 92 133 PF00432.21 Prenyltrans Repeat 7 44 44 32.1 6.9e-08 1 CL0059
Cotton_A_10205_CDS 141 184 141 184 PF00432.21 Prenyltrans Repeat 1 44 44 29.9 3.3e-07 1 CL0059
Cotton_A_10205_CDS 192 231 189 232 PF00432.21 Prenyltrans Repeat 4 43 44 41.4 8.5e-11 1 CL0059
Cotton_A_10205_CDS 241 279 237 280 PF00432.21 Prenyltrans Repeat 5 43 44 30.4 2.4e-07 1 CL0059
Cotton_A_10205_CDS 366 404 363 405 PF00432.21 Prenyltrans Repeat 6 43 44 25.3 9.1e-06 1 CL0059
Cotton_A_01666_CDS 512 893 487 895 PF00503.20 G-alpha Domain 21 352 354 213.5 4.6e-63 1 CL0023
Cotton_A_32357_CDS 57 93 56 93 PF05184.15 SapB_1 Domain 2 38 38 47.8 1e-12 1 No_clan
Cotton_A_32357_CDS 97 129 97 129 PF03489.17 SapB_2 Family 1 34 34 25.7 8.9e-06 1 No_clan
Cotton_A_32357_CDS 144 177 144 179 PF05184.15 SapB_1 Domain 3 36 38 34.2 1.8e-08 1 No_clan
Cotton_A_32357_CDS 183 216 183 216 PF03489.17 SapB_2 Family 1 34 34 36.7 3.4e-09 1 No_clan
Cotton_A_07104_CDS 40 191 39 192 PF04043.15 PMEI Domain 2 153 154 121.8 3.2e-35 1 No_clan
Cotton_A_26008_CDS 30 237 30 237 PF00314.17 Thaumatin Domain 1 214 214 267.2 1e-79 1 CL0293
Cotton_A_27702_CDS 36 112 31 141 PF07714.17 Pkinase_Tyr Domain 9 94 259 44.5 1.2e-11 1 CL0016
Cotton_A_16385_CDS 5 377 4 377 PF00022.19 Actin Family 2 407 407 492.4 7.8e-148 1 CL0108
Cotton_A_26650_CDS 147 317 147 318 PF02582.14 DUF155 Family 1 175 176 98.7 3.9e-28 1 No_clan
Cotton_A_18944_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 59.6 2.5e-16 1 CL0123
Cotton_A_18944_CDS 67 112 67 112 PF00249.31 Myb_DNA-binding Domain 1 46 46 51.1 1.1e-13 1 CL0123
Cotton_A_01319_CDS 10 182 5 184 PF00025.21 Arf Domain 6 173 175 167.9 1.4e-49 1 CL0023
Cotton_A_09393_CDS 48 189 48 189 PF02365.15 NAM Family 1 126 126 88.8 5.2e-25 1 No_clan
Cotton_A_08106_CDS 4 358 4 358 PF05631.14 MFS_5 Family 1 354 354 633.3 9.2e-191 1 CL0015
Cotton_A_08078_CDS 44 153 44 176 PF00685.27 Sulfotransfer_1 Domain 1 130 267 87.5 1e-24 1 CL0023
Cotton_A_14726_CDS 54 139 52 179 PF03634.13 TCP Family 3 89 156 95.7 4e-27 1 No_clan
Cotton_A_27523_CDS 23 191 22 192 PF01397.21 Terpene_synth Domain 2 191 192 137.1 5.4e-40 1 No_clan
Cotton_A_27523_CDS 223 473 223 479 PF03936.16 Terpene_synth_C Domain 1 252 267 292.6 2.6e-87 1 CL0613
Cotton_A_06564_CDS 27 67 26 75 PF12799.7 LRR_4 Repeat 2 40 44 30.9 2.4e-07 1 CL0022
Cotton_A_06564_CDS 123 145 123 145 PF00560.33 LRR_1 Repeat 1 23 23 11.3 0.43 1 CL0022
Cotton_A_06564_CDS 320 340 318 340 PF00560.33 LRR_1 Repeat 3 23 23 10.7 0.7 1 CL0022
Cotton_A_06564_CDS 390 452 390 452 PF13855.6 LRR_8 Repeat 1 61 61 34.5 1.3e-08 1 CL0022
Cotton_A_06564_CDS 492 551 491 551 PF13855.6 LRR_8 Repeat 2 61 61 31.7 9.6e-08 1 CL0022
Cotton_A_17299_CDS 36 478 36 479 PF01490.18 Aa_trans Family 1 408 409 389.0 2.1e-116 1 CL0062
Cotton_A_12340_CDS 18 39 17 39 PF05678.14 VQ Motif 4 25 28 37.4 1.3e-09 1 No_clan
Cotton_A_39792_CDS 56 307 54 307 PF13088.6 BNR_2 Domain 3 278 278 206.4 5e-61 1 CL0434
Cotton_A_15600_CDS 168 226 166 227 PF00170.21 bZIP_1 Family 5 63 64 38.5 9.2e-10 1 CL0018
Cotton_A_24343_CDS 32 79 32 80 PF08100.11 Dimerisation Domain 1 50 51 63.8 1e-17 1 CL0123
Cotton_A_24343_CDS 132 343 132 343 PF00891.18 Methyltransf_2 Domain 1 210 210 183.3 3.5e-54 1 CL0063
Cotton_A_21746_CDS 83 287 83 287 PF11833.8 CPP1-like Family 1 197 197 195.8 5.7e-58 1 No_clan
Cotton_A_40486_CDS 43 123 43 123 PF01016.19 Ribosomal_L27 Family 1 79 79 124.2 1.6e-36 1 No_clan
Cotton_A_09234_CDS 2 407 1 408 PF00067.22 p450 Domain 55 462 463 299.8 3.2e-89 1 No_clan
Cotton_A_34995_CDS 116 316 105 316 PF00141.23 peroxidase Domain 13 229 229 129.9 1.2e-37 1 CL0617
Cotton_A_27136_CDS 92 180 44 187 PF01459.22 Porin_3 Family 179 265 270 37.4 1.9e-09 1 CL0193
Cotton_A_09411_CDS 16 66 16 67 PF00847.20 AP2 Domain 1 53 54 41.7 1e-10 1 CL0081
Cotton_A_19172_CDS 15 168 15 186 PF01582.20 TIR Family 1 147 176 143.0 8e-42 1 CL0173
Cotton_A_25676_CDS 16 191 16 191 PF02301.18 HORMA Domain 1 212 212 73.6 1.6e-20 1 CL0651
Cotton_A_35276_CDS 42 118 37 119 PF02298.17 Cu_bind_like Domain 8 83 84 64.4 7.3e-18 1 CL0026
Cotton_A_08178_CDS 371 452 366 454 PF00153.27 Mito_carr Family 7 93 97 58.8 3.9e-16 1 No_clan
Cotton_A_07526_CDS 21 83 19 84 PF00690.26 Cation_ATPase_N Domain 4 68 69 49.1 3.2e-13 1 No_clan
Cotton_A_07526_CDS 133 310 131 311 PF00122.20 E1-E2_ATPase Family 4 180 181 164.9 1.3e-48 1 No_clan
Cotton_A_07526_CDS 327 604 327 604 PF00702.26 Hydrolase Domain 1 210 210 61.8 1.1e-16 1 CL0137
Cotton_A_29284_CDS 149 384 145 385 PF00931.22 NB-ARC Domain 5 251 252 177.1 3.6e-52 1 CL0023
Cotton_A_29284_CDS 526 581 524 582 PF13855.6 LRR_8 Repeat 3 59 61 33.5 2.6e-08 1 CL0022
Cotton_A_18273_CDS 2 104 1 104 PF00168.30 C2 Domain 2 103 103 99.0 1.7e-28 1 CL0154
Cotton_A_18273_CDS 261 409 260 409 PF16016.5 VASt Domain 2 154 154 107.6 7.7e-31 1 CL0209
Cotton_A_18273_CDS 544 645 543 645 PF00168.30 C2 Domain 2 103 103 51.5 1e-13 1 CL0154
Cotton_A_18273_CDS 697 801 696 807 PF02893.20 GRAM Domain 2 107 114 57.4 1.1e-15 1 CL0266
Cotton_A_18273_CDS 879 979 878 979 PF16016.5 VASt Domain 2 110 154 35.4 1.3e-08 1 CL0209
Cotton_A_22059_CDS 192 218 191 219 PF01535.20 PPR Family 4 30 31 12.8 0.11 1 CL0020
Cotton_A_22059_CDS 223 269 221 270 PF13041.6 PPR_2 Repeat 3 49 50 52.4 4.4e-14 1 CL0020
Cotton_A_22059_CDS 295 325 295 325 PF01535.20 PPR Family 1 31 31 27.7 2e-06 1 CL0020
Cotton_A_22059_CDS 328 375 327 375 PF13041.6 PPR_2 Repeat 2 50 50 51.0 1.2e-13 1 CL0020
Cotton_A_22059_CDS 399 429 399 429 PF01535.20 PPR Family 1 31 31 33.5 2.7e-08 1 CL0020
Cotton_A_22059_CDS 431 479 431 480 PF13041.6 PPR_2 Repeat 1 49 50 58.3 6.2e-16 1 CL0020
Cotton_A_22059_CDS 502 549 501 550 PF13041.6 PPR_2 Repeat 2 49 50 59.4 2.9e-16 1 CL0020
Cotton_A_22059_CDS 619 645 610 647 PF13812.6 PPR_3 Repeat 34 60 63 26.6 4.7e-06 1 CL0020
Cotton_A_01570_CDS 197 310 151 310 PF02544.16 Steroid_dh Family 41 150 150 93.2 1.5e-26 1 CL0115
Cotton_A_16449_CDS 40 284 39 284 PF00141.23 peroxidase Domain 2 229 229 258.3 6.2e-77 1 CL0617
Cotton_A_39628_CDS 42 76 42 76 PF10559.9 Plug_translocon Domain 1 35 35 59.8 1.6e-16 1 No_clan
Cotton_A_06568_CDS 6 40 5 45 PF00646.33 F-box Domain 2 35 48 22.1 0.0001 1 CL0271
Cotton_A_06568_CDS 316 355 316 389 PF03478.18 DUF295 Domain 1 40 55 49.0 3.2e-13 1 No_clan
Cotton_A_32647_CDS 18 121 18 122 PF01920.20 Prefoldin_2 Coiled-coil 1 105 106 81.4 4e-23 1 CL0200
Cotton_A_15319_CDS 92 290 92 290 PF01812.20 5-FTHF_cyc-lig Family 1 187 187 144.1 4.2e-42 1 CL0246
Cotton_A_16882_CDS 98 543 98 544 PF05761.14 5_nucleotid Family 1 457 458 471.0 4.3e-141 1 CL0137
Cotton_A_23498_CDS 2 100 2 104 PF03195.14 LOB Family 1 94 99 82.4 2.7e-23 1 No_clan
Cotton_A_01590_CDS 113 160 113 161 PF13041.6 PPR_2 Repeat 1 48 50 35.5 8.2e-09 1 CL0020
Cotton_A_01590_CDS 190 215 187 217 PF01535.20 PPR Family 4 29 31 9.7 1.1 1 CL0020
Cotton_A_01590_CDS 246 294 246 295 PF13041.6 PPR_2 Repeat 1 49 50 35.8 6.7e-09 1 CL0020
Cotton_A_01590_CDS 349 397 349 398 PF13041.6 PPR_2 Repeat 1 49 50 40.3 2.7e-10 1 CL0020
Cotton_A_01590_CDS 424 447 423 450 PF01535.20 PPR Family 2 25 31 13.5 0.066 1 CL0020
Cotton_A_01590_CDS 494 519 491 519 PF01535.20 PPR Family 6 31 31 11.0 0.42 1 CL0020
Cotton_A_01590_CDS 523 579 523 591 PF14432.6 DYW_deaminase Family 1 56 127 39.8 3.7e-10 1 CL0109
Cotton_A_36075_CDS 189 219 186 219 PF06200.14 tify Domain 4 34 34 60.6 6.2e-17 1 No_clan
Cotton_A_36075_CDS 324 348 324 349 PF09425.10 CCT_2 Motif 1 25 26 48.7 4.9e-13 1 CL0281
Cotton_A_18272_CDS 123 210 101 212 PF03874.16 RNA_pol_Rpb4 Family 35 121 123 34.7 1.8e-08 1 CL0426
Cotton_A_01078_CDS 354 399 350 399 PF00010.26 HLH Domain 6 53 53 38.9 6.2e-10 1 No_clan
Cotton_A_04638_CDS 4 334 3 334 PF08569.11 Mo25 Family 2 326 327 410.7 4.8e-123 1 CL0020
Cotton_A_02557_CDS 41 134 40 145 PF00168.30 C2 Domain 2 92 103 72.8 2.2e-20 1 CL0154
Cotton_A_02557_CDS 201 307 201 307 PF00168.30 C2 Domain 1 103 103 69.7 2e-19 1 CL0154
Cotton_A_02557_CDS 362 471 362 471 PF00168.30 C2 Domain 1 103 103 78.9 2.9e-22 1 CL0154
Cotton_A_02557_CDS 616 771 616 771 PF08372.10 PRT_C Family 1 156 156 270.3 4.2e-81 1 CL0484
Cotton_A_11958_CDS 121 382 121 382 PF00069.25 Pkinase Domain 1 264 264 201.6 1.4e-59 1 CL0016
Cotton_A_08006_CDS 6 144 6 145 PF00179.26 UQ_con Domain 1 139 140 153.3 3e-45 1 CL0208
Cotton_A_08006_CDS 157 191 156 191 PF00627.31 UBA Domain 3 37 37 30.5 2.5e-07 1 CL0214
Cotton_A_20228_CDS 189 473 185 474 PF00176.23 SNF2_N Family 58 349 350 172.3 1.1e-50 1 CL0023
Cotton_A_20228_CDS 541 639 540 639 PF00271.31 Helicase_C Family 2 111 111 48.1 1.2e-12 1 CL0023
Cotton_A_13007_CDS 163 475 163 477 PF10250.9 O-FucT Family 1 330 336 180.2 8.6e-53 1 CL0113
Cotton_A_26156_CDS 128 229 128 230 PF02362.21 B3 Family 1 100 101 78.2 3.5e-22 1 CL0405
Cotton_A_26156_CDS 254 335 254 337 PF06507.13 Auxin_resp Family 1 81 83 116.1 6.4e-34 1 No_clan
Cotton_A_26156_CDS 762 858 740 860 PF02309.16 AUX_IAA Family 119 235 237 32.6 7.2e-08 1 CL0072
Cotton_A_13418_CDS 249 316 249 316 PF00462.24 Glutaredoxin Domain 1 60 60 42.0 8.2e-11 1 CL0172
Cotton_A_02348_CDS 199 307 198 327 PF00561.20 Abhydrolase_1 Domain 3 107 257 74.6 9.6e-21 1 CL0028
Cotton_A_03680_CDS 2 40 1 45 PF00646.33 F-box Domain 4 42 48 29.4 5e-07 1 CL0271
Cotton_A_03680_CDS 227 315 226 328 PF07734.13 FBA_1 Family 2 93 164 37.0 3e-09 1 CL0162
Cotton_A_23299_CDS 9 76 9 76 PF00076.22 RRM_1 Domain 1 70 70 64.9 4.4e-18 1 CL0221
Cotton_A_23299_CDS 111 173 111 177 PF00076.22 RRM_1 Domain 1 66 70 39.8 2.8e-10 1 CL0221
Cotton_A_13286_CDS 137 164 137 166 PF01535.20 PPR Family 2 29 31 15.7 0.013 1 CL0020
Cotton_A_13286_CDS 237 284 236 285 PF13041.6 PPR_2 Repeat 2 49 50 33.5 3.5e-08 1 CL0020
Cotton_A_13286_CDS 315 333 313 334 PF01535.20 PPR Family 6 24 31 11.2 0.36 1 CL0020
Cotton_A_13286_CDS 343 372 342 372 PF01535.20 PPR Family 2 31 31 23.9 3.2e-05 1 CL0020
Cotton_A_01391_CDS 42 147 38 147 PF01277.17 Oleosin Family 8 113 113 120.5 2.8e-35 1 No_clan
Cotton_A_27590_CDS 120 447 108 454 PF00342.19 PGI Domain 27 357 486 157.4 4.6e-46 1 CL0067
Cotton_A_27590_CDS 478 538 471 552 PF00342.19 PGI Domain 407 467 486 36.3 2.5e-09 1 CL0067
Cotton_A_32007_CDS 16 91 16 92 PF08701.11 GN3L_Grn1 Family 1 75 76 60.6 1.2e-16 1 No_clan
Cotton_A_32007_CDS 259 319 258 372 PF01926.23 MMR_HSR1 Family 2 64 114 50.5 1.8e-13 1 CL0023
Cotton_A_02566_CDS 20 67 20 67 PF00249.31 Myb_DNA-binding Domain 1 46 46 48.4 7.9e-13 1 CL0123
Cotton_A_02566_CDS 73 116 73 118 PF00249.31 Myb_DNA-binding Domain 1 44 46 49.5 3.6e-13 1 CL0123
Cotton_A_26209_CDS 59 137 59 144 PF01988.19 VIT1 Family 1 80 215 91.8 5.5e-26 1 No_clan
Cotton_A_26209_CDS 135 229 123 230 PF01988.19 VIT1 Family 121 214 215 68.3 8.1e-19 1 No_clan
Cotton_A_01151_CDS 52 137 51 139 PF06417.12 DUF1077 Family 2 89 118 88.2 3.6e-25 1 No_clan
Cotton_A_38096_CDS 63 281 63 282 PF01656.23 CbiA Domain 1 127 128 81.2 6.3e-23 1 CL0023
Cotton_A_21179_CDS 113 225 113 225 PF13640.6 2OG-FeII_Oxy_3 Domain 1 96 96 73.4 2.1e-20 1 CL0029
Cotton_A_03135_CDS 35 116 20 124 PF00383.23 dCMP_cyt_deam_1 Family 14 94 101 42.1 5.9e-11 1 CL0109
Cotton_A_03135_CDS 149 284 149 284 PF08211.12 dCMP_cyt_deam_2 Family 1 133 133 175.9 4.2e-52 1 CL0109
Cotton_A_04827_CDS 34 84 34 85 PF00847.20 AP2 Domain 1 53 54 50.5 1.8e-13 1 CL0081
Cotton_A_16034_CDS 107 177 106 178 PF13499.6 EF-hand_7 Domain 2 70 71 33.1 5.6e-08 1 CL0220
Cotton_A_21752_CDS 88 135 87 136 PF13041.6 PPR_2 Repeat 2 49 50 44.7 1.1e-11 1 CL0020
Cotton_A_21752_CDS 161 188 160 190 PF01535.20 PPR Family 2 29 31 19.9 0.00059 1 CL0020
Cotton_A_21752_CDS 191 221 191 221 PF01535.20 PPR Family 1 31 31 13.0 0.097 1 CL0020
Cotton_A_21752_CDS 264 291 264 291 PF01535.20 PPR Family 4 31 31 14.3 0.038 1 CL0020
Cotton_A_21752_CDS 292 321 292 322 PF01535.20 PPR Family 1 30 31 14.9 0.024 1 CL0020
Cotton_A_21752_CDS 391 439 391 440 PF13041.6 PPR_2 Repeat 1 49 50 37.8 1.6e-09 1 CL0020
Cotton_A_21752_CDS 493 540 493 542 PF13041.6 PPR_2 Repeat 1 48 50 39.9 3.5e-10 1 CL0020
Cotton_A_21752_CDS 667 793 667 793 PF14432.6 DYW_deaminase Family 1 127 127 73.9 1e-20 1 CL0109
Cotton_A_36785_CDS 46 301 46 334 PF00450.22 Peptidase_S10 Domain 1 259 419 317.0 2.6e-94 1 CL0028
Cotton_A_05451_CDS 72 91 71 91 PF00612.27 IQ Motif 2 21 21 19.9 0.00041 1 CL0220
Cotton_A_05451_CDS 94 111 93 112 PF00612.27 IQ Motif 2 19 21 17.0 0.0035 1 CL0220
Cotton_A_35217_CDS 140 172 140 174 PF05553.11 DUF761 Family 1 33 36 46.5 1.8e-12 1 No_clan
Cotton_A_36413_CDS 70 168 68 173 PF01154.17 HMG_CoA_synt_N Domain 3 101 174 126.9 7.5e-37 1 CL0046
Cotton_A_18524_CDS 421 449 421 450 PF00641.18 zf-RanBP Domain 1 29 30 39.3 2.8e-10 1 CL0167
Cotton_A_18524_CDS 455 482 454 483 PF00641.18 zf-RanBP Domain 2 29 30 20.9 0.00016 1 CL0167
Cotton_A_10903_CDS 5 121 4 126 PF00022.19 Actin Family 2 113 407 133.4 7.8e-39 1 CL0108
Cotton_A_10903_CDS 131 342 129 343 PF00022.19 Actin Family 140 389 407 236.3 4.6e-70 1 CL0108
Cotton_A_35685_CDS 145 411 144 414 PF00069.25 Pkinase Domain 2 260 264 156.6 7.7e-46 1 CL0016
Cotton_A_36525_CDS 195 240 191 240 PF00010.26 HLH Domain 6 53 53 43.2 2.9e-11 1 No_clan
Cotton_A_29611_CDS 38 248 37 249 PF01596.17 Methyltransf_3 Domain 2 211 212 340.1 3.4e-102 1 CL0063
Cotton_A_28166_CDS 3 180 3 181 PF04752.12 ChaC Family 1 178 179 154.0 4.1e-45 1 CL0278
Cotton_A_00993_CDS 34 239 33 239 PF15924.5 ALG11_N Family 2 209 209 288.9 2.9e-86 1 CL0113
Cotton_A_00993_CDS 267 435 261 437 PF00534.20 Glycos_transf_1 Family 14 170 172 91.6 3.8e-26 1 CL0113
Cotton_A_39814_CDS 71 441 71 441 PF12819.7 Malectin_like Domain 1 336 336 158.8 1.9e-46 1 CL0202
Cotton_A_39814_CDS 544 683 540 689 PF07714.17 Pkinase_Tyr Domain 13 159 259 85.9 2.7e-24 1 CL0016
Cotton_A_03017_CDS 200 271 200 272 PF04564.15 U-box Domain 1 72 73 80.0 1.1e-22 1 CL0229
Cotton_A_03017_CDS 486 523 484 524 PF00514.23 Arm Repeat 3 40 41 30.8 2e-07 1 CL0020
Cotton_A_03017_CDS 525 564 525 565 PF00514.23 Arm Repeat 1 40 41 25.3 1.1e-05 1 CL0020
Cotton_A_03017_CDS 568 605 567 606 PF00514.23 Arm Repeat 3 40 41 25.1 1.2e-05 1 CL0020
Cotton_A_03017_CDS 649 686 648 687 PF00514.23 Arm Repeat 3 40 41 25.7 8e-06 1 CL0020
Cotton_A_33528_CDS 1 90 1 90 PF00069.25 Pkinase Domain 164 264 264 58.4 7e-16 1 CL0016
Cotton_A_00942_CDS 54 78 53 79 PF13912.6 zf-C2H2_6 Domain 2 26 27 26.2 5.8e-06 1 CL0361
Cotton_A_35538_CDS 479 568 475 571 PF07714.17 Pkinase_Tyr Domain 5 93 259 37.6 1.4e-09 1 CL0016
Cotton_A_23912_CDS 112 373 108 373 PF07714.17 Pkinase_Tyr Domain 6 259 259 113.7 8.9e-33 1 CL0016
Cotton_A_32224_CDS 99 287 98 287 PF04669.13 Polysacc_synt_4 Family 2 190 190 234.8 5.3e-70 1 No_clan
Cotton_A_26182_CDS 541 628 539 631 PF00153.27 Mito_carr Family 3 93 97 39.5 3.9e-10 1 No_clan
Cotton_A_26182_CDS 640 720 636 722 PF00153.27 Mito_carr Family 7 94 97 31.3 1.5e-07 1 No_clan
Cotton_A_26182_CDS 727 813 725 817 PF00153.27 Mito_carr Family 3 93 97 72.1 2.6e-20 1 No_clan
Cotton_A_17219_CDS 20 162 19 163 PF12689.7 Acid_PPase Family 2 168 169 120.9 4.8e-35 1 CL0137
Cotton_A_37035_CDS 67 149 51 151 PF00085.20 Thioredoxin Domain 18 101 103 30.3 3.3e-07 1 CL0172
Cotton_A_34104_CDS 29 212 27 212 PF00227.26 Proteasome Domain 3 190 190 109.4 1.5e-31 1 CL0052
Cotton_A_07211_CDS 39 85 39 85 PF00249.31 Myb_DNA-binding Domain 1 46 46 56.8 1.9e-15 1 CL0123
Cotton_A_07211_CDS 91 137 91 137 PF00249.31 Myb_DNA-binding Domain 1 46 46 66.2 2.2e-18 1 CL0123
Cotton_A_07211_CDS 143 185 143 187 PF00249.31 Myb_DNA-binding Domain 1 43 46 50.2 2.1e-13 1 CL0123
Cotton_A_08769_CDS 65 116 65 118 PF10868.8 Defensin_like Domain 1 48 50 47.8 1.8e-12 1 CL0054
Cotton_A_25241_CDS 25 109 7 109 PF14368.6 LTP_2 Family 19 97 97 49.2 4.3e-13 1 CL0482
Cotton_A_17692_CDS 22 259 17 260 PF13561.6 adh_short_C2 Domain 4 232 234 153.4 7.2e-45 1 CL0063
Cotton_A_33251_CDS 11 137 11 138 PF02338.19 OTU Family 1 127 127 94.8 5.4e-27 1 CL0125
Cotton_A_14799_CDS 28 66 26 66 PF00514.23 Arm Repeat 3 41 41 33.2 3.5e-08 1 CL0020
Cotton_A_14799_CDS 71 108 70 109 PF00514.23 Arm Repeat 4 40 41 20.6 0.00033 1 CL0020
Cotton_A_14799_CDS 118 146 114 146 PF00514.23 Arm Repeat 13 41 41 22.8 6.5e-05 1 CL0020
Cotton_A_14799_CDS 148 187 148 188 PF00514.23 Arm Repeat 1 40 41 28.6 9.8e-07 1 CL0020
Cotton_A_34593_CDS 14 71 13 71 PF00226.31 DnaJ Domain 2 63 63 78.6 2.8e-22 1 CL0392
Cotton_A_34593_CDS 144 228 141 228 PF01556.18 DnaJ_C Domain 70 148 148 61.5 9.5e-17 1 No_clan
Cotton_A_08908_CDS 47 242 11 256 PF03896.16 TRAP_alpha Family 58 258 285 96.1 2e-27 1 No_clan
Cotton_A_34885_CDS 9 262 9 262 PF00069.25 Pkinase Domain 1 264 264 242.1 6.4e-72 1 CL0016
Cotton_A_34885_CDS 308 366 308 367 PF03822.14 NAF Domain 1 52 54 62.6 2.8e-17 1 CL0573
Cotton_A_25584_CDS 340 439 340 441 PF02362.21 B3 Family 1 99 101 56.8 1.6e-15 1 CL0405
Cotton_A_25584_CDS 572 614 572 615 PF07496.15 zf-CW Domain 1 47 48 47.7 1.2e-12 1 No_clan
Cotton_A_40205_CDS 38 107 38 108 PF00076.22 RRM_1 Domain 1 69 70 68.4 3.4e-19 1 CL0221
Cotton_A_24878_CDS 1 103 1 105 PF03936.16 Terpene_synth_C Domain 124 227 267 110.9 6.5e-32 1 CL0613
Cotton_A_11276_CDS 6 66 6 66 PF05641.12 Agenet Domain 1 61 61 55.1 8e-15 1 CL0049
Cotton_A_21910_CDS 28 96 28 129 PF14226.6 DIOX_N Family 1 77 118 60.7 2.1e-16 1 CL0029
Cotton_A_21910_CDS 173 280 172 280 PF03171.20 2OG-FeII_Oxy Domain 2 101 101 93.7 7.9e-27 1 CL0029
Cotton_A_10863_CDS 4 260 4 260 PF00069.25 Pkinase Domain 1 264 264 242.8 3.9e-72 1 CL0016
Cotton_A_30466_CDS 99 396 99 407 PF03552.14 Cellulose_synt Family 1 298 722 308.9 8e-92 1 CL0110
Cotton_A_30466_CDS 407 726 397 733 PF03552.14 Cellulose_synt Family 387 698 722 160.7 5.5e-47 1 CL0110
Cotton_A_31146_CDS 4 53 1 53 PF12776.7 Myb_DNA-bind_3 Domain 50 96 96 28.1 3e-06 1 CL0123
Cotton_A_25501_CDS 69 459 68 461 PF00232.18 Glyco_hydro_1 Domain 86 451 453 368.3 4.2e-110 1 CL0058
Cotton_A_09073_CDS 111 428 107 431 PF00520.31 Ion_trans Family 6 242 245 87.3 9e-25 1 CL0030
Cotton_A_09073_CDS 524 611 521 617 PF00027.29 cNMP_binding Domain 5 82 89 30.7 2.5e-07 1 CL0029
Cotton_A_41275_CDS 56 153 56 167 PF14226.6 DIOX_N Family 1 98 118 89.0 3.6e-25 1 CL0029
Cotton_A_41275_CDS 211 309 210 310 PF03171.20 2OG-FeII_Oxy Domain 2 100 101 99.0 1.8e-28 1 CL0029
Cotton_A_10547_CDS 36 96 18 99 PF15511.6 CENP-T_C Domain 19 79 108 34.4 1.8e-08 1 CL0012
Cotton_A_01024_CDS 41 216 41 217 PF00350.23 Dynamin_N Domain 1 167 168 184.7 1.4e-54 1 CL0023
Cotton_A_01024_CDS 226 493 226 502 PF01031.20 Dynamin_M Family 1 271 285 204.1 2.5e-60 1 No_clan
Cotton_A_01024_CDS 520 611 518 611 PF02212.18 GED Family 3 92 92 87.4 5.4e-25 1 No_clan
Cotton_A_28699_CDS 371 413 371 414 PF06203.14 CCT Motif 1 43 44 57.7 8.5e-16 1 CL0281
Cotton_A_26589_CDS 11 65 11 67 PF00412.22 LIM Domain 1 56 58 42.5 5.6e-11 1 CL0167
Cotton_A_26589_CDS 109 164 109 165 PF00412.22 LIM Domain 1 57 58 40.3 2.8e-10 1 CL0167
Cotton_A_08139_CDS 206 330 201 355 PF06552.12 TOM20_plant Family 6 122 187 31.7 1.2e-07 1 CL0020
Cotton_A_38778_CDS 109 204 98 206 PF03171.20 2OG-FeII_Oxy Domain 4 99 101 53.9 2e-14 1 CL0029
Cotton_A_04586_CDS 57 187 57 187 PF03641.14 Lysine_decarbox Family 1 132 132 149.7 4.7e-44 1 CL0349
Cotton_A_20945_CDS 159 219 157 219 PF09497.10 Med12 Domain 3 63 63 59.9 2.2e-16 1 No_clan
Cotton_A_26309_CDS 131 181 130 182 PF00847.20 AP2 Domain 2 53 54 49.7 3.2e-13 1 CL0081
Cotton_A_20524_CDS 21 45 10 45 PF00400.32 WD40 Repeat 14 38 38 19.3 0.0015 1 CL0186
Cotton_A_20524_CDS 64 89 54 89 PF00400.32 WD40 Repeat 13 38 38 14.8 0.04 1 CL0186
Cotton_A_34309_CDS 29 68 28 70 PF00249.31 Myb_DNA-binding Domain 4 43 46 30.1 4e-07 1 CL0123
Cotton_A_36831_CDS 17 170 13 171 PF00156.27 Pribosyltran Domain 9 158 159 86.0 1.9e-24 1 CL0533
Cotton_A_12956_CDS 87 144 84 144 PF13710.6 ACT_5 Domain 4 62 62 39.5 3.6e-10 1 CL0070
Cotton_A_12956_CDS 155 227 155 228 PF10369.9 ALS_ss_C Family 1 73 74 92.8 1.1e-26 1 CL0070
Cotton_A_12956_CDS 314 376 314 376 PF13710.6 ACT_5 Domain 1 62 62 40.3 2e-10 1 CL0070
Cotton_A_12956_CDS 387 459 387 460 PF10369.9 ALS_ss_C Family 1 73 74 87.0 7e-25 1 CL0070
Cotton_A_02730_CDS 26 114 26 126 PF00168.30 C2 Domain 1 91 103 77.4 8.7e-22 1 CL0154
Cotton_A_14257_CDS 131 193 128 194 PF13499.6 EF-hand_7 Domain 4 70 71 47.8 1.5e-12 1 CL0220
Cotton_A_02726_CDS 12 142 4 143 PF00179.26 UQ_con Domain 9 139 140 132.2 9.8e-39 1 CL0208
Cotton_A_07812_CDS 240 487 239 492 PF01697.27 Glyco_transf_92 Domain 2 255 260 121.3 5.4e-35 1 CL0110
Cotton_A_37356_CDS 106 200 106 200 PF08351.11 DUF1726 Family 1 93 93 106.8 4e-31 1 CL0023
Cotton_A_37356_CDS 281 338 280 359 PF05127.14 Helicase_RecD Domain 2 59 177 64.7 9.4e-18 1 CL0023
Cotton_A_00817_CDS 16 62 16 62 PF14244.6 Retrotran_gag_3 Family 1 46 48 51.3 7.6e-14 1 CL0523
Cotton_A_04317_CDS 210 307 210 307 PF03647.13 Tmemb_14 Family 1 92 92 43.8 3.2e-11 1 No_clan
Cotton_A_25837_CDS 13 60 13 60 PF00249.31 Myb_DNA-binding Domain 1 46 46 63.6 1.4e-17 1 CL0123
Cotton_A_25837_CDS 66 110 66 111 PF00249.31 Myb_DNA-binding Domain 1 45 46 51.3 9.4e-14 1 CL0123
Cotton_A_34295_CDS 60 158 60 164 PF01866.17 Diphthamide_syn Family 1 93 303 100.4 1.2e-28 1 No_clan
Cotton_A_34295_CDS 389 499 370 499 PF01866.17 Diphthamide_syn Family 194 303 303 126.8 1.1e-36 1 No_clan
Cotton_A_40022_CDS 5 198 1 219 PF07851.13 TMPIT Family 8 181 324 122.1 2.8e-35 1 No_clan
Cotton_A_40022_CDS 223 369 217 370 PF07851.13 TMPIT Family 181 323 324 148.6 2.5e-43 1 No_clan
Cotton_A_06093_CDS 95 491 89 492 PF00450.22 Peptidase_S10 Domain 9 418 419 424.0 8.6e-127 1 CL0028
Cotton_A_28164_CDS 106 335 106 336 PF02485.21 Branch Family 1 246 247 261.8 5.9e-78 1 CL0110
Cotton_A_10109_CDS 127 145 125 145 PF00612.27 IQ Motif 3 21 21 26.1 4.3e-06 1 CL0220
Cotton_A_10109_CDS 148 165 147 167 PF00612.27 IQ Motif 2 19 21 13.5 0.047 1 CL0220
Cotton_A_10109_CDS 300 375 265 379 PF13178.6 DUF4005 Family 14 88 93 47.1 2.8e-12 1 No_clan
Cotton_A_19398_CDS 4 260 4 260 PF00069.25 Pkinase Domain 1 264 264 241.8 7.8e-72 1 CL0016
Cotton_A_24144_CDS 129 233 128 296 PF03634.13 TCP Family 2 90 156 129.2 1.9e-37 1 No_clan
Cotton_A_27039_CDS 46 156 45 157 PF01416.20 PseudoU_synth_1 Domain 2 107 108 33.9 3.4e-08 1 CL0649
Cotton_A_27039_CDS 197 361 197 361 PF01416.20 PseudoU_synth_1 Domain 1 108 108 100.6 6.5e-29 1 CL0649
Cotton_A_21445_CDS 57 343 56 344 PF00291.25 PALP Family 2 293 294 227.2 2.7e-67 1 CL0063
Cotton_A_34679_CDS 2 133 1 135 PF00083.24 Sugar_tr Family 323 449 452 37.5 1.3e-09 1 CL0015
Cotton_A_31998_CDS 29 285 27 285 PF00704.28 Glyco_hydro_18 Domain 3 312 312 104.3 1e-29 1 CL0058
Cotton_A_32548_CDS 26 281 24 285 PF04811.15 Sec23_trunk Domain 4 238 243 192.9 6.6e-57 1 CL0128
Cotton_A_32548_CDS 294 394 293 394 PF08033.12 Sec23_BS Domain 2 96 96 78.8 3.9e-22 1 No_clan
Cotton_A_32548_CDS 406 504 406 505 PF04815.15 Sec23_helical Domain 1 102 103 85.9 1.3e-24 1 No_clan
Cotton_A_32548_CDS 520 606 517 606 PF00626.22 Gelsolin Domain 5 76 76 29.5 5e-07 1 CL0092
Cotton_A_37479_CDS 34 398 34 399 PF12819.7 Malectin_like Domain 1 335 336 152.0 2.2e-44 1 CL0202
Cotton_A_37479_CDS 507 775 506 777 PF00069.25 Pkinase Domain 2 260 264 155.9 1.2e-45 1 CL0016
Cotton_A_28842_CDS 21 199 20 200 PF03357.21 Snf7 Family 2 172 173 90.7 8.1e-26 1 CL0235
Cotton_A_11260_CDS 111 286 111 286 PF00005.27 ABC_tran Domain 1 137 137 87.1 1.5e-24 1 CL0023
Cotton_A_38239_CDS 1 280 1 281 PF08392.12 FAE1_CUT1_RppA Family 11 289 290 365.6 1.8e-109 1 CL0046
Cotton_A_38239_CDS 295 378 288 379 PF08541.10 ACP_syn_III_C Domain 9 89 90 41.6 1.1e-10 1 CL0046
Cotton_A_18373_CDS 61 238 61 238 PF01397.21 Terpene_synth Domain 1 192 192 170.0 4.6e-50 1 No_clan
Cotton_A_18373_CDS 269 534 269 534 PF03936.16 Terpene_synth_C Domain 1 267 267 318.1 4.2e-95 1 CL0613
Cotton_A_15087_CDS 26 85 24 86 PF02874.23 ATP-synt_ab_N Domain 3 68 69 51.4 1.1e-13 1 CL0275
Cotton_A_15087_CDS 102 223 102 223 PF16886.5 ATP-synt_ab_Xtn Family 1 121 121 138.3 1e-40 1 No_clan
Cotton_A_15087_CDS 232 458 232 458 PF00006.25 ATP-synt_ab Domain 1 213 213 359.1 7.3e-108 1 CL0023
Cotton_A_05657_CDS 171 216 167 264 PF03647.13 Tmemb_14 Family 5 50 92 37.7 2.5e-09 1 No_clan
Cotton_A_10301_CDS 3 95 3 109 PF14226.6 DIOX_N Family 1 101 118 63.6 2.8e-17 1 CL0029
Cotton_A_10301_CDS 159 252 150 252 PF03171.20 2OG-FeII_Oxy Domain 8 101 101 84.0 8.2e-24 1 CL0029
Cotton_A_24301_CDS 49 78 48 78 PF01535.20 PPR Family 2 31 31 31.4 1.3e-07 1 CL0020
Cotton_A_24301_CDS 79 109 79 109 PF01535.20 PPR Family 1 31 31 36.5 3e-09 1 CL0020
Cotton_A_24301_CDS 110 140 110 140 PF01535.20 PPR Family 1 31 31 30.7 2.1e-07 1 CL0020
Cotton_A_24301_CDS 141 170 141 171 PF01535.20 PPR Family 1 30 31 25.7 8.1e-06 1 CL0020
Cotton_A_24301_CDS 175 201 172 202 PF01535.20 PPR Family 4 30 31 27.0 3.3e-06 1 CL0020
Cotton_A_24301_CDS 203 230 203 232 PF01535.20 PPR Family 1 28 31 24.7 1.7e-05 1 CL0020
Cotton_A_24301_CDS 234 262 234 264 PF01535.20 PPR Family 1 29 31 27.5 2.2e-06 1 CL0020
Cotton_A_24301_CDS 268 293 265 294 PF01535.20 PPR Family 4 29 31 18.6 0.0015 1 CL0020
Cotton_A_24301_CDS 297 326 296 326 PF01535.20 PPR Family 2 31 31 21.7 0.00015 1 CL0020
Cotton_A_24301_CDS 394 441 394 443 PF13041.6 PPR_2 Repeat 1 48 50 42.5 5.3e-11 1 CL0020
Cotton_A_24301_CDS 470 494 468 496 PF01535.20 PPR Family 3 27 31 13.3 0.073 1 CL0020
Cotton_A_24301_CDS 568 693 568 693 PF14432.6 DYW_deaminase Family 1 127 127 129.5 6.4e-38 1 CL0109
Cotton_A_17825_CDS 98 304 93 370 PF00069.25 Pkinase Domain 6 204 264 156.3 9.3e-46 1 CL0016
Cotton_A_17029_CDS 14 58 13 60 PF00249.31 Myb_DNA-binding Domain 2 42 46 31.2 1.9e-07 1 CL0123
Cotton_A_27765_CDS 17 325 16 338 PF14647.6 FAM91_N Family 2 294 310 308.9 3.8e-92 1 No_clan
Cotton_A_27765_CDS 387 465 385 480 PF14648.6 FAM91_C Family 3 81 431 76.2 2.3e-21 1 No_clan
Cotton_A_27765_CDS 583 804 557 814 PF14648.6 FAM91_C Family 87 291 431 112.1 2.8e-32 1 No_clan
Cotton_A_27765_CDS 814 894 801 911 PF14648.6 FAM91_C Family 329 409 431 41.0 1.1e-10 1 No_clan
Cotton_A_13261_CDS 38 93 8 95 PF05922.16 Inhibitor_I9 Domain 19 78 82 24.8 2.6e-05 1 CL0570
Cotton_A_23167_CDS 469 512 469 512 PF13639.6 zf-RING_2 Domain 1 44 44 42.5 6.1e-11 1 CL0229
Cotton_A_08158_CDS 8 132 7 144 PF06552.12 TOM20_plant Family 2 126 187 199.6 3.9e-59 1 CL0020
Cotton_A_10966_CDS 18 296 18 297 PF01267.17 F-actin_cap_A Family 1 265 266 252.5 4.5e-75 1 No_clan
Cotton_A_21494_CDS 37 290 36 290 PF10160.9 Tmemb_40 Family 2 255 255 372.9 7.7e-112 1 No_clan
Cotton_A_37536_CDS 57 117 17 117 PF14510.6 ABC_trans_N Domain 30 81 81 37.5 2.7e-09 1 No_clan
Cotton_A_37536_CDS 142 315 142 319 PF00005.27 ABC_tran Domain 1 124 137 56.5 4e-15 1 CL0023
Cotton_A_37536_CDS 444 652 439 652 PF01061.24 ABC2_membrane Family 6 210 210 111.8 3e-32 1 CL0181
Cotton_A_37536_CDS 657 720 657 720 PF08370.11 PDR_assoc Family 1 65 65 82.1 1.7e-23 1 No_clan
Cotton_A_37536_CDS 790 942 790 942 PF00005.27 ABC_tran Domain 1 137 137 76.6 2.6e-21 1 CL0023
Cotton_A_37536_CDS 1088 1303 1087 1304 PF01061.24 ABC2_membrane Family 2 209 210 184.1 2.2e-54 1 CL0181
Cotton_A_05522_CDS 4 101 3 101 PF00438.20 S-AdoMet_synt_N Domain 2 99 99 144.9 9.7e-43 1 No_clan
Cotton_A_05522_CDS 117 238 117 238 PF02772.16 S-AdoMet_synt_M Domain 1 120 120 162.8 3.6e-48 1 No_clan
Cotton_A_05522_CDS 240 381 240 382 PF02773.16 S-AdoMet_synt_C Domain 1 137 138 209.9 1.3e-62 1 No_clan
Cotton_A_33916_CDS 30 120 28 134 PF07734.13 FBA_1 Family 3 94 164 24.2 2.6e-05 1 CL0162
Cotton_A_05086_CDS 558 593 553 596 PF07529.13 HSA Domain 9 44 71 30.4 3.7e-07 1 CL0023
Cotton_A_05086_CDS 1059 1107 1059 1122 PF13921.6 Myb_DNA-bind_6 Domain 1 41 60 25.4 1.2e-05 1 CL0123
Cotton_A_08531_CDS 558 606 556 606 PF00249.31 Myb_DNA-binding Domain 3 46 46 34.5 1.8e-08 1 CL0123
Cotton_A_19439_CDS 55 301 47 303 PF13360.6 PQQ_2 Domain 17 235 237 53.5 2.5e-14 1 CL0186
Cotton_A_19439_CDS 423 502 421 522 PF13360.6 PQQ_2 Domain 3 82 237 31.1 1.7e-07 1 CL0186
Cotton_A_08212_CDS 20 77 20 78 PF04927.12 SMP Family 1 58 59 60.5 1.5e-16 1 No_clan
Cotton_A_08212_CDS 85 142 85 144 PF04927.12 SMP Family 1 57 59 62.0 5.6e-17 1 No_clan
Cotton_A_11741_CDS 113 344 100 346 PF00067.22 p450 Domain 83 321 463 111.7 3.6e-32 1 No_clan
Cotton_A_11741_CDS 345 552 338 554 PF00067.22 p450 Domain 111 325 463 81.7 4.6e-23 1 No_clan
Cotton_A_27999_CDS 8 115 7 116 PF00042.22 Globin Domain 2 109 110 71.4 8.4e-20 1 CL0090
Cotton_A_14288_CDS 14 91 13 93 PF00887.19 ACBP Domain 2 83 85 102.4 1.1e-29 1 CL0632
Cotton_A_23224_CDS 13 108 13 109 PF06108.12 DUF952 Family 1 89 90 85.9 1.4e-24 1 CL0084
Cotton_A_00142_CDS 62 124 62 124 PF00226.31 DnaJ Domain 1 63 63 42.7 4.5e-11 1 CL0392
Cotton_A_32146_CDS 2 153 1 154 PF03321.13 GH3 Family 381 526 527 151.6 3.3e-44 1 CL0378
Cotton_A_22223_CDS 41 282 41 282 PF00141.23 peroxidase Domain 1 229 229 263.4 1.8e-78 1 CL0617
Cotton_A_28186_CDS 7 88 7 99 PF00188.26 CAP Domain 1 91 126 35.0 2.2e-08 1 CL0659
Cotton_A_20823_CDS 36 218 35 219 PF00722.21 Glyco_hydro_16 Domain 2 176 177 188.6 6.5e-56 1 CL0004
Cotton_A_20823_CDS 247 294 246 294 PF06955.12 XET_C Family 2 47 47 59.1 2.7e-16 1 CL0004
Cotton_A_14460_CDS 32 137 31 137 PF03763.13 Remorin_C Family 2 107 107 105.9 9.4e-31 1 No_clan
Cotton_A_00382_CDS 1 48 1 48 PF11961.8 DUF3475 Family 10 57 57 57.5 1e-15 1 No_clan
Cotton_A_00382_CDS 260 351 260 352 PF05003.12 DUF668 Family 1 88 89 90.2 9e-26 1 No_clan
Cotton_A_38500_CDS 53 138 53 138 PF00203.21 Ribosomal_S19 Domain 1 81 81 114.2 1.8e-33 1 No_clan
Cotton_A_16003_CDS 21 76 19 77 PF00403.26 HMA Domain 3 61 62 47.8 1.5e-12 1 No_clan
Cotton_A_23293_CDS 3 36 2 36 PF02037.27 SAP Family 2 35 35 35.7 5.1e-09 1 CL0306
Cotton_A_23293_CDS 84 114 82 115 PF02037.27 SAP Family 3 33 35 30.0 3.1e-07 1 CL0306
Cotton_A_23293_CDS 176 255 176 256 PF05406.15 WGR Domain 1 79 80 85.9 1.4e-24 1 No_clan
Cotton_A_23293_CDS 294 424 293 424 PF02877.14 PARP_reg Domain 2 136 136 141.8 1.4e-41 1 No_clan
Cotton_A_23293_CDS 438 638 438 638 PF00644.20 PARP Family 1 195 195 244.4 6.8e-73 1 CL0084
Cotton_A_23572_CDS 8 254 8 256 PF01370.21 Epimerase Family 1 239 241 89.9 1.6e-25 1 CL0063
Cotton_A_21725_CDS 106 249 106 250 PF00817.20 IMS Family 1 149 150 156.0 6.5e-46 1 No_clan
Cotton_A_21725_CDS 337 440 333 443 PF11799.8 IMS_C Domain 6 111 118 66.0 4.8e-18 1 No_clan
Cotton_A_21725_CDS 606 640 606 640 PF18439.1 zf_UBZ Domain 1 32 32 30.5 1.9e-07 1 CL0361
Cotton_A_09442_CDS 336 378 332 379 PF00010.26 HLH Domain 7 52 53 37.2 2.1e-09 1 No_clan
Cotton_A_27155_CDS 5 245 5 248 PF10033.9 ATG13 Family 1 236 240 123.8 8.7e-36 1 CL0651
Cotton_A_07824_CDS 29 131 27 131 PF02365.15 NAM Family 3 126 126 40.1 6e-10 1 No_clan
Cotton_A_17053_CDS 12 110 8 111 PF00085.20 Thioredoxin Domain 5 102 103 105.6 1.1e-30 1 CL0172
Cotton_A_13061_CDS 219 270 219 270 PF00249.31 Myb_DNA-binding Domain 1 46 46 26.5 5.3e-06 1 CL0123
Cotton_A_17122_CDS 78 323 78 323 PF02358.16 Trehalose_PPase Family 1 233 233 248.3 5.1e-74 1 CL0137
Cotton_A_06757_CDS 463 542 463 542 PF13771.6 zf-HC5HC2H Domain 1 90 90 46.0 4.6e-12 1 CL0390
Cotton_A_06757_CDS 668 803 668 803 PF00004.29 AAA Domain 1 132 132 131.3 2.8e-38 1 CL0023
Cotton_A_06757_CDS 829 861 827 869 PF17862.1 AAA_lid_3 Domain 4 36 45 27.1 2.6e-06 1 CL0671
Cotton_A_04877_CDS 47 82 46 87 PF00249.31 Myb_DNA-binding Domain 3 38 46 34.2 2.2e-08 1 CL0123
Cotton_A_04877_CDS 634 734 634 734 PF06584.13 DIRP Family 1 106 106 105.2 1.8e-30 1 No_clan
Cotton_A_29487_CDS 28 518 26 520 PF00232.18 Glyco_hydro_1 Domain 3 450 453 523.4 3.7e-157 1 CL0058
Cotton_A_36081_CDS 21 61 21 61 PF02533.15 PsbK Family 1 41 41 77.4 6.6e-22 1 No_clan
Cotton_A_12460_CDS 23 213 2 213 PF12819.7 Malectin_like Domain 162 336 336 90.6 1e-25 1 CL0202
Cotton_A_12460_CDS 346 609 342 612 PF07714.17 Pkinase_Tyr Domain 6 256 259 167.7 2.9e-49 1 CL0016
Cotton_A_39721_CDS 52 212 52 212 PF01554.18 MatE Family 1 161 161 107.2 6.3e-31 1 CL0222
Cotton_A_39721_CDS 274 435 272 435 PF01554.18 MatE Family 3 161 161 95.4 2.8e-27 1 CL0222
Cotton_A_10508_CDS 490 547 490 547 PF13921.6 Myb_DNA-bind_6 Domain 1 60 60 40.5 2.5e-10 1 CL0123
Cotton_A_10282_CDS 14 118 10 119 PF03732.17 Retrotrans_gag Family 14 95 96 27.6 2.6e-06 1 CL0523
Cotton_A_40138_CDS 33 83 33 84 PF00847.20 AP2 Domain 1 53 54 52.0 6e-14 1 CL0081
Cotton_A_20949_CDS 11 50 7 52 PF00646.33 F-box Domain 5 44 48 24.3 2.1e-05 1 CL0271
Cotton_A_20949_CDS 100 145 99 145 PF01344.25 Kelch_1 Repeat 2 46 46 31.5 9.4e-08 1 CL0186
Cotton_A_20949_CDS 147 187 147 188 PF01344.25 Kelch_1 Repeat 1 40 46 23.4 3.2e-05 1 CL0186
Cotton_A_27748_CDS 13 124 13 124 PF01138.21 RNase_PH Domain 1 132 132 35.2 1.5e-08 1 CL0329
Cotton_A_18840_CDS 180 267 180 267 PF03088.16 Str_synth Family 1 89 89 101.5 2e-29 1 CL0186
Cotton_A_24264_CDS 41 493 41 500 PF00067.22 p450 Domain 1 454 463 344.9 6.7e-103 1 No_clan
Cotton_A_40014_CDS 92 158 76 207 PF06003.12 SMN Family 67 135 264 25.2 8.9e-06 1 CL0049
Cotton_A_33529_CDS 60 109 59 110 PF17181.4 EPF Family 2 52 53 72.1 2.7e-20 1 No_clan
Cotton_A_06265_CDS 36 72 35 73 PF08263.12 LRRNT_2 Family 2 40 41 27.8 2.4e-06 1 No_clan
Cotton_A_06265_CDS 323 382 323 383 PF13855.6 LRR_8 Repeat 1 60 61 31.1 1.4e-07 1 CL0022
Cotton_A_06265_CDS 422 481 421 481 PF13855.6 LRR_8 Repeat 2 61 61 29.1 6e-07 1 CL0022
Cotton_A_06265_CDS 580 639 579 639 PF13855.6 LRR_8 Repeat 2 61 61 39.4 3.9e-10 1 CL0022
Cotton_A_06265_CDS 772 1040 771 1042 PF00069.25 Pkinase Domain 2 260 264 151.0 4e-44 1 CL0016
Cotton_A_13971_CDS 123 414 122 416 PF16363.5 GDP_Man_Dehyd Domain 2 330 332 196.1 1e-57 1 CL0063
Cotton_A_10102_CDS 72 630 71 630 PF00133.22 tRNA-synt_1 Family 2 602 602 670.6 1.7e-201 1 CL0039
Cotton_A_10102_CDS 691 833 689 837 PF08264.13 Anticodon_1 Domain 3 148 152 134.4 3.1e-39 1 CL0258
Cotton_A_10102_CDS 908 972 908 973 PF10458.9 Val_tRNA-synt_C Domain 1 65 66 56.3 2.8e-15 1 CL0298
Cotton_A_41036_CDS 45 283 45 285 PF00141.23 peroxidase Domain 1 226 229 245.9 3.9e-73 1 CL0617
Cotton_A_26895_CDS 219 490 218 490 PF08491.10 SE Family 2 276 276 315.9 1.7e-94 1 CL0063
Cotton_A_24002_CDS 2 41 1 46 PF00646.33 F-box Domain 4 43 48 33.1 3.5e-08 1 CL0271
Cotton_A_24002_CDS 211 283 197 302 PF08268.12 FBA_3 Domain 15 85 128 21.7 0.00015 1 CL0162
Cotton_A_09941_CDS 37 112 34 115 PF02298.17 Cu_bind_like Domain 4 81 84 80.7 5.7e-23 1 CL0026
Cotton_A_11945_CDS 28 69 27 70 PF13639.6 zf-RING_2 Domain 2 43 44 36.9 3.4e-09 1 CL0229
Cotton_A_21399_CDS 30 93 23 102 PF03171.20 2OG-FeII_Oxy Domain 7 71 101 53.1 3.6e-14 1 CL0029
Cotton_A_16282_CDS 58 111 58 112 PF01344.25 Kelch_1 Repeat 1 45 46 23.9 2.2e-05 1 CL0186
Cotton_A_28603_CDS 1 67 1 67 PF11820.8 DUF3339 Family 1 67 67 106.8 4.5e-31 1 No_clan
Cotton_A_18613_CDS 1 34 1 35 PF00067.22 p450 Domain 270 303 463 29.9 2.4e-07 1 No_clan
Cotton_A_18613_CDS 32 131 31 141 PF00067.22 p450 Domain 355 452 463 104.5 5.4e-30 1 No_clan
Cotton_A_33795_CDS 11 84 11 84 PF07765.12 KIP1 Family 1 74 74 120.5 2.4e-35 1 No_clan
Cotton_A_35413_CDS 31 130 29 130 PF05938.11 Self-incomp_S1 Family 3 104 104 99.4 1.5e-28 1 No_clan
Cotton_A_20291_CDS 14 117 2 117 PF13456.6 RVT_3 Domain 17 121 124 61.2 8.1e-17 1 CL0219
Cotton_A_13174_CDS 97 280 97 280 PF01214.18 CK_II_beta Domain 1 182 182 271.1 4.2e-81 1 No_clan
Cotton_A_30831_CDS 59 202 59 202 PF01565.23 FAD_binding_4 Domain 1 139 139 65.7 3.4e-18 1 CL0077
Cotton_A_30831_CDS 234 364 234 369 PF09265.10 Cytokin-bind Domain 1 135 281 139.7 1.2e-40 1 CL0277
Cotton_A_14846_CDS 57 162 38 180 PF00156.27 Pribosyltran Domain 25 125 159 66.6 1.8e-18 1 CL0533
Cotton_A_20661_CDS 344 377 344 380 PF07498.12 Rho_N Family 1 35 43 29.0 7.6e-07 1 CL0306
Cotton_A_12627_CDS 340 632 339 632 PF01008.17 IF-2B Family 2 282 282 274.2 1.1e-81 1 CL0246
Cotton_A_09107_CDS 36 249 36 250 PF07059.12 DUF1336 Family 1 228 229 229.3 6.3e-68 1 No_clan
Cotton_A_12188_CDS 29 190 28 264 PF01073.19 3Beta_HSD Family 2 155 280 32.5 4.3e-08 1 CL0063
Cotton_A_13577_CDS 19 435 1 441 PF02458.15 Transferase Family 15 427 434 230.5 2.9e-68 1 CL0149
Cotton_A_04294_CDS 403 446 401 448 PF13920.6 zf-C3HC4_3 Domain 3 47 50 39.2 4.6e-10 1 CL0229
Cotton_A_23103_CDS 53 266 52 267 PF05153.15 MIOX Family 2 213 249 347.9 3.3e-104 1 CL0237
Cotton_A_01845_CDS 121 224 121 224 PF03168.13 LEA_2 Domain 1 101 101 46.0 5.9e-12 1 CL0159
Cotton_A_02371_CDS 57 168 57 171 PF00072.24 Response_reg Domain 1 109 112 75.6 3.1e-21 1 CL0304
Cotton_A_02371_CDS 578 620 578 621 PF06203.14 CCT Motif 1 43 44 63.1 1.8e-17 1 CL0281
Cotton_A_20609_CDS 11 128 11 128 PF13640.6 2OG-FeII_Oxy_3 Domain 1 96 96 80.5 1.3e-22 1 CL0029
Cotton_A_20609_CDS 144 184 143 184 PF01549.24 ShK Domain 2 38 38 24.0 4.2e-05 1 CL0213
Cotton_A_10550_CDS 5 377 4 377 PF00022.19 Actin Family 2 407 407 492.5 7.5e-148 1 CL0108
Cotton_A_17099_CDS 1 420 1 422 PF02458.15 Transferase Family 10 432 434 352.8 2.3e-105 1 CL0149
Cotton_A_20137_CDS 102 295 101 296 PF01762.21 Galactosyl_T Family 2 194 195 162.7 8.7e-48 1 CL0110
Cotton_A_09359_CDS 9 70 9 70 PF00886.19 Ribosomal_S16 Family 1 62 62 89.8 8.4e-26 1 No_clan
Cotton_A_28095_CDS 52 317 50 318 PF02485.21 Branch Family 3 246 247 194.2 2.5e-57 1 CL0110
Cotton_A_34496_CDS 54 134 54 134 PF17903.1 KH_8 Domain 1 81 81 107.5 2.6e-31 1 CL0007
Cotton_A_25800_CDS 13 267 13 268 PF06813.13 Nodulin-like Family 1 249 250 215.0 1.1e-63 1 CL0015
Cotton_A_26187_CDS 109 286 108 287 PF00849.22 PseudoU_synth_2 Family 2 159 160 87.6 9.4e-25 1 CL0649
Cotton_A_17511_CDS 57 179 54 179 PF04859.12 DUF641 Family 4 128 128 131.8 1.8e-38 1 No_clan
Cotton_A_16364_CDS 76 289 76 296 PF04012.12 PspA_IM30 Family 1 218 221 183.8 3.4e-54 1 CL0235
Cotton_A_11987_CDS 235 482 235 491 PF10250.9 O-FucT Family 1 295 336 34.2 2.2e-08 1 CL0113
Cotton_A_14999_CDS 129 231 129 231 PF04504.14 DUF573 Family 1 95 95 109.5 9.8e-32 1 CL0123
Cotton_A_36532_CDS 17 104 13 126 PF18052.1 Rx_N Domain 2 89 93 80.5 8.4e-23 1 No_clan
Cotton_A_36532_CDS 200 366 196 374 PF00931.22 NB-ARC Domain 5 171 252 119.6 1.2e-34 1 CL0023
Cotton_A_25204_CDS 117 357 116 359 PF00561.20 Abhydrolase_1 Domain 2 255 257 58.9 5.9e-16 1 CL0028
Cotton_A_02411_CDS 22 88 22 88 PF04716.14 ETC_C1_NDUFA5 Family 1 67 67 96.1 7.5e-28 1 No_clan
Cotton_A_15519_CDS 218 274 218 274 PF03106.15 WRKY Domain 1 59 59 86.1 1.4e-24 1 CL0274
Cotton_A_15519_CDS 382 439 382 439 PF03106.15 WRKY Domain 1 59 59 89.2 1.5e-25 1 CL0274
Cotton_A_20244_CDS 26 187 25 188 PF00160.21 Pro_isomerase Domain 2 157 158 157.1 4.2e-46 1 CL0475
Cotton_A_26002_CDS 77 294 76 294 PF04720.12 PDDEXK_6 Family 2 221 221 252.5 4.1e-75 1 No_clan
Cotton_A_14066_CDS 573 670 572 670 PF01388.21 ARID Domain 2 90 90 51.9 9.1e-14 1 CL0123
Cotton_A_39867_CDS 4 164 4 177 PF16363.5 GDP_Man_Dehyd Domain 1 165 332 122.2 2.9e-35 1 CL0063
Cotton_A_39392_CDS 132 175 131 175 PF13639.6 zf-RING_2 Domain 2 44 44 48.4 8.8e-13 1 CL0229
Cotton_A_35425_CDS 24 315 24 318 PF00248.21 Aldo_ket_red Domain 1 291 294 261.8 7e-78 1 No_clan
Cotton_A_31247_CDS 2 297 1 300 PF11955.8 PORR Family 33 323 326 354.3 5.3e-106 1 No_clan
Cotton_A_16066_CDS 91 170 91 170 PF18290.1 Nudix_hydro Domain 1 80 80 111.9 1e-32 1 No_clan
Cotton_A_16066_CDS 183 288 182 293 PF00293.28 NUDIX Domain 2 108 131 59.5 3.3e-16 1 CL0261
Cotton_A_10250_CDS 94 524 94 524 PF01532.20 Glyco_hydro_47 Domain 1 458 458 503.8 4.6e-151 1 CL0059
Cotton_A_35103_CDS 9 54 9 55 PF00249.31 Myb_DNA-binding Domain 1 45 46 59.3 3e-16 1 CL0123
Cotton_A_35103_CDS 63 104 61 106 PF00249.31 Myb_DNA-binding Domain 3 44 46 49.4 3.7e-13 1 CL0123
Cotton_A_29069_CDS 98 208 92 209 PF02142.22 MGS Domain 7 94 95 69.7 1.9e-19 1 No_clan
Cotton_A_29069_CDS 214 537 214 537 PF01808.18 AICARFT_IMPCHas Family 1 296 296 371.5 3.3e-111 1 CL0109
Cotton_A_36679_CDS 13 55 12 55 PF08263.12 LRRNT_2 Family 2 41 41 34.8 1.5e-08 1 No_clan
Cotton_A_36679_CDS 85 145 84 145 PF13855.6 LRR_8 Repeat 2 61 61 27.6 1.8e-06 1 CL0022
Cotton_A_24465_CDS 69 401 68 401 PF01504.18 PIP5K Family 2 274 274 237.3 1.8e-70 1 CL0016
Cotton_A_36182_CDS 174 214 173 215 PF08879.10 WRC Domain 2 42 43 54.4 7.4e-15 1 No_clan
Cotton_A_02040_CDS 35 146 34 149 PF07732.15 Cu-oxidase_3 Domain 2 115 119 127.5 2.6e-37 1 CL0026
Cotton_A_02040_CDS 161 295 160 296 PF00394.22 Cu-oxidase Domain 2 158 159 137.9 3.2e-40 1 CL0026
Cotton_A_02040_CDS 377 512 376 516 PF07731.14 Cu-oxidase_2 Domain 2 133 137 93.2 1.1e-26 1 CL0026
Cotton_A_41300_CDS 113 170 113 170 PF04844.13 Ovate Family 1 58 58 79.5 1.3e-22 1 No_clan
Cotton_A_26170_CDS 1 78 1 78 PF03094.15 Mlo Family 320 397 479 114.1 5.3e-33 1 No_clan
Cotton_A_14076_CDS 145 188 141 190 PF13041.6 PPR_2 Repeat 5 48 50 32.5 7.1e-08 1 CL0020
Cotton_A_14076_CDS 222 247 221 248 PF01535.20 PPR Family 5 30 31 15.1 0.02 1 CL0020
Cotton_A_14076_CDS 250 279 249 279 PF01535.20 PPR Family 2 31 31 24.5 2e-05 1 CL0020
Cotton_A_14076_CDS 322 346 319 348 PF01535.20 PPR Family 4 28 31 10.8 0.49 1 CL0020
Cotton_A_14076_CDS 350 376 350 380 PF01535.20 PPR Family 1 27 31 18.8 0.0013 1 CL0020
Cotton_A_14076_CDS 452 478 451 481 PF01535.20 PPR Family 2 28 31 13.1 0.088 1 CL0020
Cotton_A_14076_CDS 550 597 549 598 PF13041.6 PPR_2 Repeat 2 49 50 44.3 1.5e-11 1 CL0020
Cotton_A_14076_CDS 624 649 623 651 PF01535.20 PPR Family 2 27 31 14.8 0.025 1 CL0020
Cotton_A_18069_CDS 15 120 14 121 PF04718.15 ATP-synt_G Family 2 99 100 86.7 1.5e-24 1 No_clan
Cotton_A_31957_CDS 245 278 245 280 PF00320.27 GATA Domain 1 34 36 54.6 6e-15 1 CL0167
Cotton_A_14563_CDS 4 91 2 101 PF00651.31 BTB Domain 10 97 111 23.0 6.9e-05 1 CL0033
Cotton_A_14563_CDS 154 379 153 380 PF03000.14 NPH3 Family 2 257 258 191.7 1.8e-56 1 No_clan
Cotton_A_21637_CDS 114 242 114 243 PF13837.6 Myb_DNA-bind_4 Domain 1 89 90 78.1 5e-22 1 CL0123
Cotton_A_26496_CDS 11 233 11 233 PF00244.20 14-3-3 Domain 1 222 222 358.2 1.4e-107 1 No_clan
Cotton_A_33662_CDS 79 184 78 199 PF00849.22 PseudoU_synth_2 Family 2 101 160 48.9 7.2e-13 1 CL0649
Cotton_A_31559_CDS 9 132 3 132 PF03087.14 DUF241 Family 119 234 234 97.7 8.6e-28 1 CL0133
Cotton_A_38052_CDS 40 273 9 289 PF00067.22 p450 Domain 201 442 463 165.5 1.8e-48 1 No_clan
Cotton_A_02344_CDS 31 142 30 143 PF04398.12 DUF538 Family 2 111 112 106.2 1.2e-30 1 No_clan
Cotton_A_24192_CDS 47 109 47 109 PF00462.24 Glutaredoxin Domain 1 60 60 63.0 2.3e-17 1 CL0172
Cotton_A_04301_CDS 85 253 85 253 PF11891.8 RETICULATA-like Family 1 177 177 220.0 1.9e-65 1 No_clan
Cotton_A_08293_CDS 58 80 58 80 PF00096.26 zf-C2H2 Domain 1 23 23 17.2 0.0052 1 CL0361
Cotton_A_31195_CDS 1 176 1 179 PF00124.19 Photo_RC Family 10 168 260 202.6 6.3e-60 1 No_clan
Cotton_A_12654_CDS 78 289 77 356 PF00069.25 Pkinase Domain 2 208 264 153.8 5.3e-45 1 CL0016
Cotton_A_29696_CDS 33 146 32 148 PF07732.15 Cu-oxidase_3 Domain 2 117 119 118.9 1.2e-34 1 CL0026
Cotton_A_29696_CDS 159 295 158 296 PF00394.22 Cu-oxidase Domain 2 158 159 140.3 5.6e-41 1 CL0026
Cotton_A_29696_CDS 381 512 376 516 PF07731.14 Cu-oxidase_2 Domain 6 133 137 95.8 1.8e-27 1 CL0026
Cotton_A_09354_CDS 10 227 9 268 PF00069.25 Pkinase Domain 2 212 264 95.6 3e-27 1 CL0016
Cotton_A_02284_CDS 6 75 6 79 PF04564.15 U-box Domain 1 69 73 69.1 2.7e-19 1 CL0229
Cotton_A_17948_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 47.2 1.9e-12 1 CL0123
Cotton_A_17948_CDS 67 111 67 112 PF00249.31 Myb_DNA-binding Domain 1 45 46 52.9 3e-14 1 CL0123
Cotton_A_14451_CDS 9 334 9 335 PF16363.5 GDP_Man_Dehyd Domain 1 331 332 224.3 2.6e-66 1 CL0063
Cotton_A_35786_CDS 29 212 28 213 PF00722.21 Glyco_hydro_16 Domain 2 176 177 190.3 1.9e-56 1 CL0004
Cotton_A_35786_CDS 241 288 240 288 PF06955.12 XET_C Family 2 47 47 58.3 4.7e-16 1 CL0004
Cotton_A_07927_CDS 16 78 14 79 PF13499.6 EF-hand_7 Domain 3 70 71 44.7 1.4e-11 1 CL0220
Cotton_A_07927_CDS 91 153 91 155 PF13499.6 EF-hand_7 Domain 1 69 71 57.9 1e-15 1 CL0220
Cotton_A_08092_CDS 147 405 147 406 PF08323.11 Glyco_transf_5 Domain 1 243 244 226.9 2.9e-67 1 CL0113
Cotton_A_08092_CDS 460 610 453 621 PF00534.20 Glycos_transf_1 Family 13 156 172 55.5 4.8e-15 1 CL0113
Cotton_A_01960_CDS 39 178 38 185 PF00106.25 adh_short Domain 2 141 195 108.9 2.2e-31 1 CL0063
Cotton_A_18774_CDS 249 306 249 306 PF04844.13 Ovate Family 1 58 58 86.7 7.4e-25 1 No_clan
Cotton_A_03665_CDS 15 433 12 437 PF02458.15 Transferase Family 3 429 434 315.0 6.6e-94 1 CL0149
Cotton_A_14967_CDS 34 192 31 197 PF11744.8 ALMT Family 30 207 469 182.5 1.3e-53 1 CL0307
Cotton_A_03257_CDS 209 242 209 242 PF12579.8 DUF3755 Family 1 34 34 60.7 7.4e-17 1 No_clan
Cotton_A_22661_CDS 124 272 123 274 PF10358.9 NT-C2 Family 2 142 146 53.6 1.9e-14 1 CL0154
Cotton_A_03756_CDS 61 104 60 107 PF01479.25 S4 Domain 2 45 48 38.2 8.7e-10 1 CL0492
Cotton_A_03756_CDS 116 295 116 297 PF01728.19 FtsJ Family 1 175 177 74.8 8.8e-21 1 CL0063
Cotton_A_20800_CDS 444 777 444 779 PF00225.23 Kinesin Domain 1 331 333 365.2 2.6e-109 1 CL0023
Cotton_A_25041_CDS 92 280 45 280 PF03007.16 WES_acyltransf Domain 65 264 264 38.9 8.4e-10 1 CL0149
Cotton_A_25041_CDS 345 483 345 483 PF06974.13 DUF1298 Family 1 145 145 142.3 1e-41 1 No_clan
Cotton_A_02490_CDS 95 216 94 218 PF04488.15 Gly_transf_sug Family 2 95 98 91.4 4.3e-26 1 CL0110
Cotton_A_02490_CDS 233 356 232 358 PF04572.12 Gb3_synth Family 2 128 130 100.8 6.4e-29 1 No_clan
Cotton_A_36681_CDS 29 122 29 124 PF14363.6 AAA_assoc Family 1 94 96 72.3 3.2e-20 1 No_clan
Cotton_A_36681_CDS 247 393 246 394 PF00004.29 AAA Domain 2 131 132 56.8 3.1e-15 1 CL0023
Cotton_A_11091_CDS 711 761 698 762 PF14844.6 PH_BEACH Domain 48 99 100 36.1 5.2e-09 1 CL0266
Cotton_A_11091_CDS 800 1029 800 1046 PF02138.18 Beach Family 1 238 276 307.6 7.5e-92 1 No_clan
Cotton_A_12917_CDS 35 145 31 147 PF07732.15 Cu-oxidase_3 Domain 5 117 119 137.8 1.6e-40 1 CL0026
Cotton_A_12917_CDS 160 307 157 308 PF00394.22 Cu-oxidase Domain 4 158 159 149.3 9.6e-44 1 CL0026
Cotton_A_12917_CDS 409 539 406 540 PF07731.14 Cu-oxidase_2 Domain 4 136 137 137.8 1.8e-40 1 CL0026
Cotton_A_32467_CDS 2 71 1 71 PF00033.19 Cytochrome_B Domain 121 189 189 89.4 2.5e-25 1 CL0328
Cotton_A_23821_CDS 84 241 83 242 PF00484.19 Pro_CA Domain 2 155 156 150.1 6e-44 1 No_clan
Cotton_A_02903_CDS 122 585 121 586 PF03055.15 RPE65 Family 2 462 463 378.2 7.2e-113 1 No_clan
Cotton_A_11980_CDS 1 241 1 242 PF00590.20 TP_methylase Domain 1 212 213 82.5 4e-23 1 No_clan
Cotton_A_04195_CDS 110 485 109 498 PF00899.21 ThiF Domain 2 224 244 104.9 4.2e-30 1 CL0063
Cotton_A_04195_CDS 283 354 283 354 PF16190.5 E1_FCCH Domain 1 71 71 101.0 3.1e-29 1 No_clan
Cotton_A_04195_CDS 355 424 355 424 PF16191.5 E1_4HB Domain 1 70 70 77.1 8.8e-22 1 No_clan
Cotton_A_04195_CDS 506 1005 506 1009 PF00899.21 ThiF Domain 1 238 244 245.1 6.4e-73 1 CL0063
Cotton_A_04195_CDS 693 946 693 946 PF10585.9 UBA_e1_thiolCys Domain 1 252 252 276.9 2e-82 1 No_clan
Cotton_A_04195_CDS 1017 1106 1017 1106 PF09358.10 E1_UFD Domain 1 93 93 81.0 7.5e-23 1 No_clan
Cotton_A_03679_CDS 2 44 1 46 PF00646.33 F-box Domain 4 46 48 33.5 2.6e-08 1 CL0271
Cotton_A_03679_CDS 225 375 224 392 PF07734.13 FBA_1 Family 2 148 164 31.3 1.7e-07 1 CL0162
Cotton_A_28269_CDS 17 389 16 390 PF07690.16 MFS_1 Family 2 352 353 181.2 2.7e-53 1 CL0015
Cotton_A_13546_CDS 5 86 5 86 PF10496.9 Syntaxin-18_N Domain 1 85 85 57.0 1.7e-15 1 No_clan
Cotton_A_40124_CDS 95 150 95 151 PF00046.29 Homeodomain Domain 1 56 57 60.1 1.4e-16 1 CL0123
Cotton_A_40124_CDS 279 498 278 498 PF01852.19 START Domain 2 209 209 185.6 7.3e-55 1 CL0209
Cotton_A_17582_CDS 32 286 32 290 PF03140.15 DUF247 Family 1 257 397 185.2 2.1e-54 1 No_clan
Cotton_A_23610_CDS 48 206 47 206 PF07800.12 DUF1644 Family 2 168 168 231.6 5.3e-69 1 CL0229
Cotton_A_36026_CDS 5 51 3 53 PF04770.12 ZF-HD_dimer Family 3 53 55 59.7 2.6e-16 1 No_clan
Cotton_A_05559_CDS 24 272 22 274 PF00139.19 Lectin_legB Domain 3 247 249 248.8 5.5e-74 1 CL0004
Cotton_A_05559_CDS 344 609 341 611 PF07714.17 Pkinase_Tyr Domain 4 257 259 160.7 3.9e-47 1 CL0016
Cotton_A_23568_CDS 377 447 377 449 PF04564.15 U-box Domain 1 71 73 72.2 2.9e-20 1 CL0229
Cotton_A_23568_CDS 674 711 672 712 PF00514.23 Arm Repeat 3 40 41 39.6 3.3e-10 1 CL0020
Cotton_A_23568_CDS 757 793 755 794 PF00514.23 Arm Repeat 4 40 41 26.1 6.3e-06 1 CL0020
Cotton_A_07893_CDS 217 259 217 259 PF13041.6 PPR_2 Repeat 8 50 50 30.1 3.9e-07 1 CL0020
Cotton_A_07893_CDS 284 313 283 313 PF01535.20 PPR Family 2 31 31 12.0 0.2 1 CL0020
Cotton_A_07893_CDS 315 360 315 364 PF13041.6 PPR_2 Repeat 1 46 50 35.8 6.6e-09 1 CL0020
Cotton_A_07893_CDS 388 431 385 435 PF13041.6 PPR_2 Repeat 4 46 50 41.6 1e-10 1 CL0020
Cotton_A_07893_CDS 462 488 461 489 PF01535.20 PPR Family 4 30 31 9.3 1.4 1 CL0020
Cotton_A_30720_CDS 74 165 73 167 PF04140.14 ICMT Family 2 92 94 100.3 5.9e-29 1 CL0115
Cotton_A_18641_CDS 229 297 229 299 PF00076.22 RRM_1 Domain 1 68 70 58.4 4.6e-16 1 CL0221
Cotton_A_34826_CDS 3 66 1 66 PF00076.22 RRM_1 Domain 8 70 70 42.5 4.3e-11 1 CL0221
Cotton_A_15402_CDS 116 380 113 380 PF01040.18 UbiA Family 4 252 252 127.6 4.8e-37 1 CL0613
Cotton_A_01015_CDS 42 183 42 184 PF03018.14 Dirigent Family 1 147 148 183.7 1.6e-54 1 CL0650
Cotton_A_22958_CDS 56 125 56 126 PF00076.22 RRM_1 Domain 1 69 70 64.3 6.7e-18 1 CL0221
Cotton_A_23381_CDS 52 177 52 177 PF10357.9 Kin17_mid Family 1 126 126 162.5 4e-48 1 CL0123
Cotton_A_23381_CDS 276 329 276 329 PF18131.1 KN17_SH3 Domain 1 54 54 78.7 2.6e-22 1 CL0361
Cotton_A_01740_CDS 207 257 206 258 PF05739.19 SNARE Family 2 52 53 41.4 1.1e-10 1 No_clan
Cotton_A_36002_CDS 25 605 24 605 PF02705.16 K_trans Family 2 534 534 643.9 1.9e-193 1 CL0062
Cotton_A_20507_CDS 21 93 12 100 PF08567.11 PH_TFIIH Domain 5 80 87 28.1 1.9e-06 1 CL0266
Cotton_A_20507_CDS 195 246 192 247 PF03909.17 BSD Domain 5 56 58 42.5 4.8e-11 1 No_clan
Cotton_A_32844_CDS 52 115 10 117 PF00501.28 AMP-binding Family 152 217 423 66.1 2.2e-18 1 CL0378
Cotton_A_02837_CDS 9 231 9 231 PF00244.20 14-3-3 Domain 1 222 222 354.6 1.8e-106 1 No_clan
Cotton_A_25491_CDS 22 260 22 261 PF00856.28 SET Family 1 168 169 48.5 1.3e-12 1 No_clan
Cotton_A_25491_CDS 56 93 56 93 PF01753.18 zf-MYND Domain 1 38 38 34.9 1.2e-08 1 CL0175
Cotton_A_25491_CDS 391 458 381 459 PF13424.6 TPR_12 Repeat 9 76 77 33.4 4e-08 1 CL0020
Cotton_A_33349_CDS 89 516 89 521 PF00854.21 PTR2 Family 1 390 395 313.0 2.5e-93 1 CL0015
Cotton_A_02940_CDS 41 326 41 327 PF04674.12 Phi_1 Family 1 275 276 337.0 7.7e-101 1 No_clan
Cotton_A_29041_CDS 15 188 10 191 PF05753.14 TRAP_beta Family 3 176 178 196.1 3.1e-58 1 CL0159
Cotton_A_05696_CDS 50 191 45 191 PF00190.22 Cupin_1 Domain 6 151 151 114.8 2.6e-33 1 CL0029
Cotton_A_00459_CDS 265 312 265 312 PF12906.7 RINGv Domain 1 48 48 41.1 1.4e-10 1 CL0229
Cotton_A_28846_CDS 6 303 6 303 PF01095.19 Pectinesterase Family 1 298 298 415.2 9.6e-125 1 CL0268
Cotton_A_09180_CDS 10 88 9 88 PF17927.1 Ins134_P3_kin_N Domain 2 80 80 100.6 4.8e-29 1 CL0483
Cotton_A_09180_CDS 108 308 107 309 PF05770.11 Ins134_P3_kin Domain 2 200 201 287.4 4.8e-86 1 CL0179
Cotton_A_18312_CDS 40 121 40 121 PF02298.17 Cu_bind_like Domain 1 84 84 70.3 1e-19 1 CL0026
Cotton_A_07995_CDS 63 86 61 86 PF06507.13 Auxin_resp Family 60 83 83 21.1 0.00027 1 No_clan
Cotton_A_07995_CDS 147 273 60 273 PF02309.16 AUX_IAA Family 83 214 237 27.3 2.9e-06 1 CL0072
Cotton_A_31845_CDS 199 227 193 238 PF00400.32 WD40 Repeat 7 34 38 14.9 0.038 1 CL0186
Cotton_A_31845_CDS 245 275 229 276 PF00400.32 WD40 Repeat 9 37 38 19.4 0.0014 1 CL0186
Cotton_A_19858_CDS 39 75 38 76 PF08263.12 LRRNT_2 Family 2 40 41 22.3 0.00012 1 No_clan
Cotton_A_25633_CDS 229 298 229 300 PF13921.6 Myb_DNA-bind_6 Domain 1 58 60 27.3 3.2e-06 1 CL0123
Cotton_A_03124_CDS 3 142 2 143 PF01217.20 Clat_adaptor_s Domain 2 141 142 159.5 4.6e-47 1 CL0212
Cotton_A_40925_CDS 39 523 39 523 PF03140.15 DUF247 Family 1 397 397 331.0 1.2e-98 1 No_clan
Cotton_A_30968_CDS 50 472 48 472 PF00909.21 Ammonium_transp Family 3 399 399 456.1 8.5e-137 1 No_clan
Cotton_A_37734_CDS 12 117 4 117 PF00125.24 Histone Domain 27 131 131 162.9 4.7e-48 1 CL0012
Cotton_A_10236_CDS 19 64 18 64 PF08263.12 LRRNT_2 Family 2 41 41 36.2 5.5e-09 1 No_clan
Cotton_A_10236_CDS 119 174 119 174 PF13855.6 LRR_8 Repeat 6 61 61 30.1 2.9e-07 1 CL0022
Cotton_A_10236_CDS 239 253 239 253 PF13516.6 LRR_6 Repeat 4 18 24 9.3 1.2 1 CL0022
Cotton_A_10236_CDS 289 301 286 303 PF13516.6 LRR_6 Repeat 5 17 24 9.4 1.1 1 CL0022
Cotton_A_10236_CDS 308 324 308 324 PF13516.6 LRR_6 Repeat 2 18 24 11.4 0.27 1 CL0022
Cotton_A_10236_CDS 354 413 353 413 PF13855.6 LRR_8 Repeat 2 61 61 31.4 1.1e-07 1 CL0022
Cotton_A_10236_CDS 449 509 449 509 PF13855.6 LRR_8 Repeat 1 61 61 43.8 1.6e-11 1 CL0022
Cotton_A_10236_CDS 730 929 728 1005 PF07714.17 Pkinase_Tyr Domain 5 203 259 103.3 1.3e-29 1 CL0016
Cotton_A_33671_CDS 21 194 21 194 PF01734.22 Patatin Family 1 204 204 44.7 1.7e-11 1 CL0323
Cotton_A_28830_CDS 9 177 9 178 PF00535.26 Glycos_transf_2 Family 1 169 170 121.8 2.4e-35 1 CL0110
Cotton_A_18255_CDS 75 216 74 217 PF00810.18 ER_lumen_recept Family 2 146 147 136.8 9.8e-40 1 CL0141
Cotton_A_10990_CDS 182 205 182 205 PF00560.33 LRR_1 Repeat 1 23 23 11.0 0.54 1 CL0022
Cotton_A_31992_CDS 36 83 28 83 PF03766.13 Remorin_N Family 7 54 54 62.8 2.3e-17 1 No_clan
Cotton_A_31992_CDS 87 192 86 192 PF03763.13 Remorin_C Family 2 107 107 113.8 3.2e-33 1 No_clan
Cotton_A_25914_CDS 23 104 22 112 PF00481.21 PP2C Family 2 90 258 45.3 8.1e-12 1 CL0238
Cotton_A_25914_CDS 138 313 132 317 PF00481.21 PP2C Family 82 254 258 204.0 3.1e-60 1 CL0238
Cotton_A_06995_CDS 142 205 134 205 PF16135.5 Jas Family 13 76 76 27.7 2.3e-06 1 No_clan
Cotton_A_18503_CDS 107 217 105 217 PF00411.19 Ribosomal_S11 Family 3 110 110 70.0 2.1e-19 1 CL0267
Cotton_A_31665_CDS 29 340 29 341 PF00657.22 Lipase_GDSL Family 1 199 200 68.4 8e-19 1 CL0264
Cotton_A_30333_CDS 86 139 85 140 PF00046.29 Homeodomain Domain 3 56 57 56.1 2.5e-15 1 CL0123
Cotton_A_30333_CDS 141 181 141 183 PF02183.18 HALZ Coiled-coil 1 41 43 55.3 5.5e-15 1 No_clan
Cotton_A_10366_CDS 32 472 32 472 PF00171.22 Aldedh Family 1 462 462 524.0 2.7e-157 1 CL0099
Cotton_A_07969_CDS 153 270 151 307 PF13369.6 Transglut_core2 Family 3 120 155 62.6 3.1e-17 1 CL0125
Cotton_A_06099_CDS 30 169 29 169 PF01138.21 RNase_PH Domain 2 132 132 97.4 9.3e-28 1 CL0329
Cotton_A_06099_CDS 200 263 199 265 PF03725.15 RNase_PH_C Domain 2 65 67 36.9 2.8e-09 1 No_clan
Cotton_A_03590_CDS 186 298 185 298 PF05132.14 RNA_pol_Rpc4 Family 2 149 149 83.7 1.8e-23 1 CL0662
Cotton_A_33620_CDS 50 123 35 134 PF00078.27 RVT_1 Family 119 197 222 56.2 3.3e-15 1 CL0027
Cotton_A_33620_CDS 104 166 102 170 PF17919.1 RT_RNaseH_2 Domain 3 70 100 42.3 6e-11 1 CL0219
Cotton_A_32157_CDS 9 30 5 34 PF12854.7 PPR_1 Repeat 5 26 34 27.0 2.5e-06 1 CL0020
Cotton_A_32157_CDS 44 93 44 93 PF13041.6 PPR_2 Repeat 1 50 50 58.1 7.3e-16 1 CL0020
Cotton_A_32157_CDS 115 163 114 163 PF13041.6 PPR_2 Repeat 2 50 50 73.7 9.5e-21 1 CL0020
Cotton_A_06617_CDS 39 179 38 180 PF14223.6 Retrotran_gag_2 Family 2 137 138 112.5 1.2e-32 1 CL0523
Cotton_A_15255_CDS 264 491 228 491 PF05278.12 PEARLI-4 Family 39 269 269 238.8 7.8e-71 1 No_clan
Cotton_A_24998_CDS 52 84 50 93 PF00569.17 ZZ Domain 5 37 45 34.1 1.8e-08 1 CL0006
Cotton_A_24998_CDS 111 152 110 154 PF00249.31 Myb_DNA-binding Domain 3 43 46 48.7 6.2e-13 1 CL0123
Cotton_A_26438_CDS 259 311 259 311 PF05739.19 SNARE Family 1 53 53 59.4 2.4e-16 1 No_clan
Cotton_A_31869_CDS 166 404 163 405 PF00931.22 NB-ARC Domain 4 251 252 166.7 5.1e-49 1 CL0023
Cotton_A_23419_CDS 6 222 5 226 PF00009.27 GTP_EFTU Domain 2 190 194 179.9 3.9e-53 1 CL0023
Cotton_A_23419_CDS 248 313 248 315 PF03144.25 GTP_EFTU_D2 Domain 1 72 74 53.8 1.9e-14 1 CL0575
Cotton_A_23419_CDS 322 429 321 430 PF03143.17 GTP_EFTU_D3 Domain 2 111 112 131.1 2e-38 1 No_clan
Cotton_A_23419_CDS 592 677 590 678 PF00439.25 Bromodomain Domain 3 83 84 63.8 1.2e-17 1 No_clan
Cotton_A_23419_CDS 770 833 770 833 PF17035.5 BET Domain 1 64 64 68.0 5.7e-19 1 CL0665
Cotton_A_30874_CDS 201 297 194 298 PF13426.7 PAS_9 Domain 7 103 104 66.9 1.6e-18 1 CL0183
Cotton_A_30874_CDS 481 573 472 575 PF13426.7 PAS_9 Domain 9 101 104 72.2 3.5e-20 1 CL0183
Cotton_A_30874_CDS 785 952 771 952 PF00069.25 Pkinase Domain 118 264 264 115.2 3.2e-33 1 CL0016
Cotton_A_29419_CDS 61 107 60 111 PF00646.33 F-box Domain 2 40 48 24.8 1.4e-05 1 CL0271
Cotton_A_29419_CDS 126 384 126 384 PF01167.18 Tub Domain 1 241 241 277.6 9.7e-83 1 CL0395
Cotton_A_36992_CDS 28 180 28 188 PF03162.13 Y_phosphatase2 Domain 1 153 165 212.8 2.1e-63 1 CL0031
Cotton_A_11873_CDS 319 356 319 375 PF08590.10 DUF1771 Domain 1 38 64 29.1 9.8e-07 1 No_clan
Cotton_A_11873_CDS 391 459 391 466 PF01713.21 Smr Family 1 60 80 27.0 4.3e-06 1 No_clan
Cotton_A_13699_CDS 67 128 66 128 PF13855.6 LRR_8 Repeat 2 61 61 30.8 1.9e-07 1 CL0022
Cotton_A_13699_CDS 347 369 347 369 PF00560.33 LRR_1 Repeat 1 23 23 10.1 1.1 1 CL0022
Cotton_A_10787_CDS 129 186 129 187 PF05383.17 La Domain 1 58 59 53.3 2.1e-14 1 CL0123
Cotton_A_10787_CDS 219 290 219 293 PF00076.22 RRM_1 Domain 1 61 70 34.7 1.1e-08 1 CL0221
Cotton_A_08999_CDS 3 35 1 35 PF00400.32 WD40 Repeat 7 37 38 16.0 0.016 1 CL0186
Cotton_A_08999_CDS 43 78 40 78 PF00400.32 WD40 Repeat 4 38 38 22.5 0.00015 1 CL0186
Cotton_A_08999_CDS 84 120 82 120 PF00400.32 WD40 Repeat 3 38 38 32.0 1.5e-07 1 CL0186
Cotton_A_08999_CDS 126 162 124 162 PF00400.32 WD40 Repeat 3 38 38 41.4 1.6e-10 1 CL0186
Cotton_A_08999_CDS 166 204 166 204 PF00400.32 WD40 Repeat 1 38 38 29.2 1.1e-06 1 CL0186
Cotton_A_08999_CDS 705 862 704 862 PF13925.6 Katanin_con80 Domain 2 160 160 182.2 6.7e-54 1 No_clan
Cotton_A_22391_CDS 94 253 94 272 PF04893.17 Yip1 Domain 1 165 172 55.8 4.4e-15 1 CL0112
Cotton_A_00130_CDS 26 80 22 80 PF07333.12 SLR1-BP Domain 5 58 58 41.6 1.2e-10 1 CL0054
Cotton_A_01239_CDS 9 56 7 56 PF01679.17 Pmp3 Family 3 49 49 63.0 2.2e-17 1 No_clan
Cotton_A_32891_CDS 92 312 92 325 PF07168.11 Ureide_permease Family 1 230 360 368.0 4e-110 1 CL0184
Cotton_A_32891_CDS 326 404 321 404 PF07168.11 Ureide_permease Family 282 360 360 147.4 4.3e-43 1 CL0184
Cotton_A_23907_CDS 88 135 87 135 PF03107.16 C1_2 Domain 2 47 47 36.1 6e-09 1 CL0006
Cotton_A_23907_CDS 217 265 217 265 PF03107.16 C1_2 Domain 1 47 47 31.1 2.1e-07 1 CL0006
Cotton_A_23907_CDS 340 384 339 384 PF03107.16 C1_2 Domain 2 47 47 36.5 4.4e-09 1 CL0006
Cotton_A_23907_CDS 397 438 395 438 PF03107.16 C1_2 Domain 3 47 47 36.1 5.8e-09 1 CL0006
Cotton_A_23907_CDS 537 581 536 581 PF03107.16 C1_2 Domain 2 47 47 33.6 3.6e-08 1 CL0006
Cotton_A_23907_CDS 647 687 645 688 PF03107.16 C1_2 Domain 3 46 47 27.1 3.9e-06 1 CL0006
Cotton_A_17281_CDS 5 87 5 103 PF18052.1 Rx_N Domain 1 84 93 65.1 5.3e-18 1 No_clan
Cotton_A_17281_CDS 169 416 167 416 PF00931.22 NB-ARC Domain 3 252 252 195.5 8.6e-58 1 CL0023
Cotton_A_06517_CDS 1667 1716 1666 1718 PF03941.15 INCENP_ARK-bind Family 4 52 55 35.7 5.9e-09 1 No_clan
Cotton_A_06517_CDS 1721 1949 1720 1961 PF00139.19 Lectin_legB Domain 2 235 249 209.2 7e-62 1 CL0004
Cotton_A_06517_CDS 2047 2317 2047 2319 PF00069.25 Pkinase Domain 1 260 264 166.4 8e-49 1 CL0016
Cotton_A_14111_CDS 125 147 124 152 PF13606.6 Ank_3 Repeat 2 25 31 24.2 2.7e-05 1 CL0465
Cotton_A_14111_CDS 181 226 179 234 PF13637.6 Ank_4 Repeat 4 47 55 25.3 1.6e-05 1 CL0465
Cotton_A_14111_CDS 232 304 228 310 PF12796.7 Ank_2 Repeat 15 75 83 44.9 1.3e-11 1 CL0465
Cotton_A_14111_CDS 445 563 444 563 PF13962.6 PGG Domain 2 116 116 87.7 4.6e-25 1 No_clan
Cotton_A_15602_CDS 48 468 48 491 PF00067.22 p450 Domain 1 438 463 227.9 2e-67 1 No_clan
Cotton_A_28822_CDS 87 414 45 426 PF00201.18 UDPGT Family 73 413 499 124.9 4e-36 1 CL0113
Cotton_A_02370_CDS 83 184 81 184 PF03168.13 LEA_2 Domain 3 101 101 43.1 4.9e-11 1 CL0159
Cotton_A_06902_CDS 45 204 41 226 PF00067.22 p450 Domain 5 157 463 66.9 1.4e-18 1 No_clan
Cotton_A_06902_CDS 228 306 222 306 PF00067.22 p450 Domain 299 376 463 60.0 1.8e-16 1 No_clan
Cotton_A_37614_CDS 2 87 1 91 PF00407.19 Bet_v_1 Domain 2 86 151 29.1 7.7e-07 1 CL0209
Cotton_A_01786_CDS 95 164 95 165 PF00076.22 RRM_1 Domain 1 69 70 55.8 3e-15 1 CL0221
Cotton_A_13076_CDS 80 172 77 172 PF12764.7 Gly-rich_Ago1 Domain 3 106 106 43.6 4.2e-11 1 No_clan
Cotton_A_13076_CDS 191 325 190 325 PF16486.5 ArgoN Domain 2 138 138 110.8 7.8e-32 1 No_clan
Cotton_A_13076_CDS 335 384 335 385 PF08699.10 ArgoL1 Domain 1 51 52 74.5 3.9e-21 1 No_clan
Cotton_A_13076_CDS 391 516 390 518 PF02170.22 PAZ Domain 2 135 137 95.5 2.3e-27 1 CL0638
Cotton_A_13076_CDS 527 573 527 573 PF16488.5 ArgoL2 Family 1 47 47 47.6 1.5e-12 1 No_clan
Cotton_A_13076_CDS 584 659 583 663 PF16487.5 ArgoMid Domain 2 80 84 30.6 2.9e-07 1 No_clan
Cotton_A_13076_CDS 678 998 677 999 PF02171.17 Piwi Family 2 301 302 379.6 1e-113 1 CL0219
Cotton_A_03512_CDS 44 411 44 424 PF01490.18 Aa_trans Family 1 384 409 263.5 2.8e-78 1 CL0062
Cotton_A_35565_CDS 156 287 155 288 PF07227.11 PHD_Oberon Family 2 129 130 119.4 9e-35 1 CL0390
Cotton_A_14600_CDS 163 354 163 354 PF08245.12 Mur_ligase_M Domain 1 192 192 109.3 2.3e-31 1 No_clan
Cotton_A_14600_CDS 374 450 374 464 PF02875.21 Mur_ligase_C Domain 1 76 91 43.1 3.7e-11 1 No_clan
Cotton_A_01494_CDS 103 381 102 383 PF03151.16 TPT Family 2 279 290 386.4 8.4e-116 1 CL0184
Cotton_A_06201_CDS 53 508 52 513 PF00067.22 p450 Domain 2 458 463 272.7 5.3e-81 1 No_clan
Cotton_A_19989_CDS 26 73 26 73 PF00249.31 Myb_DNA-binding Domain 1 46 46 42.5 5.4e-11 1 CL0123
Cotton_A_19989_CDS 83 124 79 124 PF00249.31 Myb_DNA-binding Domain 5 46 46 47.3 1.7e-12 1 CL0123
Cotton_A_39744_CDS 21 546 21 550 PF00463.21 ICL Domain 1 521 526 906.5 4.6e-273 1 CL0151
Cotton_A_19808_CDS 33 101 29 101 PF01190.17 Pollen_Ole_e_I Family 26 99 99 37.2 3e-09 1 CL0287
Cotton_A_19808_CDS 187 278 184 284 PF03656.13 Pam16 Family 4 111 127 31.9 1.1e-07 1 CL0392
Cotton_A_07302_CDS 32 347 31 347 PF03662.14 Glyco_hydro_79n Domain 2 318 318 508.6 5.1e-153 1 CL0058
Cotton_A_32351_CDS 144 211 132 211 PF00154.21 RecA Family 197 263 263 73.1 2.4e-20 1 CL0023
Cotton_A_08440_CDS 28 762 25 765 PF05691.12 Raffinose_syn Family 4 746 750 1149.4 0 1 CL0058
Cotton_A_40954_CDS 3 253 1 253 PF00069.25 Pkinase Domain 5 264 264 247.1 1.9e-73 1 CL0016
Cotton_A_40954_CDS 281 339 281 339 PF03822.14 NAF Domain 1 54 54 72.0 3.3e-20 1 CL0573
Cotton_A_24141_CDS 14 306 13 306 PF05653.14 Mg_trans_NIPA Family 2 295 295 446.6 3.3e-134 1 CL0184
Cotton_A_28688_CDS 129 208 129 215 PF02362.21 B3 Family 1 87 101 52.7 3.1e-14 1 CL0405
Cotton_A_22604_CDS 35 86 34 87 PF14416.6 PMR5N Domain 2 52 53 82.2 2.4e-23 1 No_clan
Cotton_A_22604_CDS 88 351 88 352 PF13839.6 PC-Esterase Family 1 282 283 313.7 1.4e-93 1 CL0264
Cotton_A_12258_CDS 91 214 91 214 PF07889.12 DUF1664 Coiled-coil 1 124 124 162.5 4.1e-48 1 No_clan
Cotton_A_17460_CDS 123 294 123 294 PF00270.29 DEAD Domain 1 176 176 167.7 2.1e-49 1 CL0023
Cotton_A_17460_CDS 330 439 329 439 PF00271.31 Helicase_C Family 2 111 111 104.1 5.1e-30 1 CL0023
Cotton_A_14462_CDS 20 182 12 182 PF04525.12 LOR Domain 14 187 187 143.5 5.6e-42 1 CL0395
Cotton_A_29113_CDS 305 414 290 415 PF13692.6 Glyco_trans_1_4 Domain 32 132 134 33.6 4.6e-08 1 CL0113
Cotton_A_03366_CDS 66 339 64 340 PF00701.22 DHDPS Domain 3 288 289 306.8 9.1e-92 1 CL0036
Cotton_A_22665_CDS 26 271 17 274 PF00248.21 Aldo_ket_red Domain 28 291 294 160.7 4.5e-47 1 No_clan
Cotton_A_31900_CDS 19 331 19 331 PF00225.23 Kinesin Domain 1 333 333 322.3 2.9e-96 1 CL0023
Cotton_A_31900_CDS 817 977 817 978 PF11995.8 DUF3490 Family 1 160 161 227.6 6.3e-68 1 No_clan
Cotton_A_11386_CDS 65 188 64 207 PF00330.20 Aconitase Family 1 116 461 118.5 3.8e-34 1 No_clan
Cotton_A_10666_CDS 405 489 405 490 PF04795.12 PAPA-1 Family 1 85 86 73.3 2e-20 1 No_clan
Cotton_A_10666_CDS 506 537 506 537 PF04438.16 zf-HIT Domain 1 30 30 32.1 7.5e-08 1 CL0175
Cotton_A_12750_CDS 1 159 1 159 PF00195.19 Chal_sti_synt_N Domain 67 225 225 246.3 2.4e-73 1 CL0046
Cotton_A_12750_CDS 170 249 170 250 PF02797.15 Chal_sti_synt_C Domain 1 80 151 84.2 8.7e-24 1 CL0046
Cotton_A_32842_CDS 23 124 23 124 PF06880.11 DUF1262 Family 1 99 99 129.0 7.2e-38 1 No_clan
Cotton_A_09455_CDS 125 264 123 264 PF04819.12 DUF716 Family 3 138 138 114.4 2.9e-33 1 No_clan
Cotton_A_25876_CDS 32 87 30 88 PF02701.15 zf-Dof Family 3 58 59 113.8 2.9e-33 1 No_clan
Cotton_A_02888_CDS 72 227 72 227 PF04749.17 PLAC8 Family 1 99 99 49.8 5.2e-13 1 No_clan
Cotton_A_08268_CDS 9 44 7 44 PF06220.12 zf-U1 Domain 3 38 38 69.2 1.8e-19 1 CL0361
Cotton_A_29935_CDS 5 117 1 118 PF12819.7 Malectin_like Domain 233 335 336 57.5 1.2e-15 1 CL0202
Cotton_A_29935_CDS 214 405 209 410 PF07714.17 Pkinase_Tyr Domain 7 202 259 158.5 1.9e-46 1 CL0016
Cotton_A_35890_CDS 7 250 5 253 PF00335.20 Tetraspanin Family 4 228 229 93.9 1.2e-26 1 CL0347
Cotton_A_00083_CDS 10 308 10 308 PF05623.12 DUF789 Family 1 294 294 348.1 5.2e-104 1 No_clan
Cotton_A_39014_CDS 49 442 49 442 PF03372.23 Exo_endo_phos Domain 1 233 233 44.7 1.1e-11 1 CL0530
Cotton_A_03583_CDS 15 232 12 232 PF00230.20 MIP Family 4 227 227 186.9 4.4e-55 1 No_clan
Cotton_A_05728_CDS 39 133 33 148 PF08378.11 NERD Family 9 93 108 41.8 1.2e-10 1 CL0236
Cotton_A_05139_CDS 22 245 1 245 PF03151.16 TPT Family 64 290 290 61.8 6.6e-17 1 CL0184
Cotton_A_35914_CDS 49 68 48 70 PF00560.33 LRR_1 Repeat 2 21 23 9.5 1.7 1 CL0022
Cotton_A_35914_CDS 73 89 72 98 PF00560.33 LRR_1 Repeat 2 18 23 10.7 0.69 1 CL0022
Cotton_A_07903_CDS 43 67 42 68 PF13912.6 zf-C2H2_6 Domain 2 26 27 26.6 4.3e-06 1 CL0361
Cotton_A_23951_CDS 16 240 16 240 PF00244.20 14-3-3 Domain 1 222 222 346.5 5.7e-104 1 No_clan
Cotton_A_33556_CDS 16 258 14 258 PF00069.25 Pkinase Domain 3 264 264 199.7 5.6e-59 1 CL0016
Cotton_A_30648_CDS 120 214 117 215 PF04191.13 PEMT Family 13 104 106 23.5 5.5e-05 1 CL0115
Cotton_A_09105_CDS 153 296 153 297 PF02620.17 YceD Family 1 120 121 103.4 8.6e-30 1 No_clan
Cotton_A_29397_CDS 109 683 109 683 PF02705.16 K_trans Family 1 534 534 563.9 3.1e-169 1 CL0062
Cotton_A_31902_CDS 17 76 17 76 PF00137.21 ATP-synt_C Family 1 60 60 52.1 6.2e-14 1 No_clan
Cotton_A_31902_CDS 97 155 96 155 PF00137.21 ATP-synt_C Family 2 60 60 72.2 3.2e-20 1 No_clan
Cotton_A_21697_CDS 26 569 25 571 PF03321.13 GH3 Family 2 525 527 686.4 2.8e-206 1 CL0378
Cotton_A_14366_CDS 41 366 41 370 PF00657.22 Lipase_GDSL Family 1 196 200 75.2 6.7e-21 1 CL0264
Cotton_A_17758_CDS 313 578 312 581 PF00664.23 ABC_membrane Family 2 271 274 87.5 1.1e-24 1 CL0241
Cotton_A_17758_CDS 646 780 646 781 PF00005.27 ABC_tran Domain 1 136 137 81.7 6.8e-23 1 CL0023
Cotton_A_17758_CDS 924 1180 920 1188 PF00664.23 ABC_membrane Family 2 266 274 85.4 5.1e-24 1 CL0241
Cotton_A_17758_CDS 1254 1355 1254 1367 PF00005.27 ABC_tran Domain 1 97 137 67.4 1.8e-18 1 CL0023
Cotton_A_11335_CDS 11 138 11 139 PF12165.8 Alfin Family 1 126 127 222.9 6.8e-67 1 No_clan
Cotton_A_11335_CDS 200 248 199 249 PF00628.29 PHD Domain 2 51 52 39.8 3.2e-10 1 CL0390
Cotton_A_37083_CDS 85 599 84 600 PF14222.6 MOR2-PAG1_N Family 2 550 551 335.0 1.1e-99 1 No_clan
Cotton_A_37083_CDS 637 1752 636 1752 PF14228.6 MOR2-PAG1_mid Family 2 1114 1114 2192.7 0 1 No_clan
Cotton_A_37083_CDS 1777 2058 1777 2059 PF14225.6 MOR2-PAG1_C Family 1 252 253 258.3 9e-77 1 No_clan
Cotton_A_26663_CDS 141 244 141 245 PF16656.5 Pur_ac_phosph_N Domain 1 93 94 56.6 2.9e-15 1 CL0159
Cotton_A_26663_CDS 258 484 256 484 PF00149.28 Metallophos Domain 6 204 204 62.1 1e-16 1 CL0163
Cotton_A_26663_CDS 509 576 509 577 PF14008.6 Metallophos_C Domain 2 62 63 59.1 5.7e-16 1 No_clan
Cotton_A_31545_CDS 116 342 116 343 PF02485.21 Branch Family 1 246 247 277.1 1.2e-82 1 CL0110
Cotton_A_00043_CDS 33 199 32 201 PF02779.24 Transket_pyr Domain 2 176 178 138.8 1.4e-40 1 CL0254
Cotton_A_00043_CDS 218 340 218 340 PF02780.20 Transketolase_C Domain 1 124 124 150.0 2.8e-44 1 CL0591
Cotton_A_07630_CDS 66 342 63 350 PF00520.31 Ion_trans Family 4 193 245 73.3 1.7e-20 1 CL0030
Cotton_A_22685_CDS 161 229 161 232 PF14360.6 PAP2_C Domain 1 71 74 81.8 3.9e-23 1 CL0525
Cotton_A_13804_CDS 53 435 49 441 PF00999.21 Na_H_Exchanger Family 4 369 381 93.4 1.2e-26 1 CL0064
Cotton_A_08463_CDS 7 178 6 178 PF13967.6 RSN1_TM Family 2 156 156 160.4 2.8e-47 1 No_clan
Cotton_A_15520_CDS 150 427 148 430 PF07899.11 Frigida Family 3 286 289 341.0 5.2e-102 1 No_clan
Cotton_A_09697_CDS 495 584 492 587 PF01248.26 Ribosomal_L7Ae Domain 4 92 95 84.4 3.4e-24 1 CL0101
Cotton_A_19533_CDS 34 71 31 72 PF08263.12 LRRNT_2 Family 4 40 41 34.2 2.2e-08 1 No_clan
Cotton_A_19533_CDS 128 187 127 187 PF13855.6 LRR_8 Repeat 2 61 61 29.8 3.8e-07 1 CL0022
Cotton_A_19533_CDS 218 233 217 234 PF13516.6 LRR_6 Repeat 2 17 24 8.9 1.7 1 CL0022
Cotton_A_22580_CDS 376 443 376 443 PF03847.13 TFIID_20kDa Domain 1 68 68 113.8 3.9e-33 1 CL0012
Cotton_A_22061_CDS 41 331 39 333 PF01095.19 Pectinesterase Family 3 296 298 193.9 2.5e-57 1 CL0268
Cotton_A_20580_CDS 155 957 154 957 PF00311.17 PEPcase Family 2 795 795 1003.4 7.1e-302 1 CL0151
Cotton_A_28617_CDS 125 319 121 320 PF01435.18 Peptidase_M48 Domain 5 195 196 72.0 5.3e-20 1 CL0126
Cotton_A_28761_CDS 11 84 11 114 PF14226.6 DIOX_N Family 1 76 118 60.2 3.1e-16 1 CL0029
Cotton_A_04296_CDS 103 186 98 187 PF00439.25 Bromodomain Domain 10 83 84 64.7 6.1e-18 1 No_clan
Cotton_A_32476_CDS 37 102 36 103 PF00013.29 KH_1 Domain 2 65 66 49.5 2.7e-13 1 CL0007
Cotton_A_32476_CDS 123 188 122 189 PF00013.29 KH_1 Domain 2 65 66 52.5 3.1e-14 1 CL0007
Cotton_A_32476_CDS 257 323 256 323 PF00013.29 KH_1 Domain 2 66 66 53.1 2.1e-14 1 CL0007
Cotton_A_03209_CDS 7 177 6 177 PF13967.6 RSN1_TM Family 2 156 156 163.0 4.3e-48 1 No_clan
Cotton_A_03209_CDS 198 359 198 359 PF14703.6 PHM7_cyt Domain 1 176 176 148.0 3.1e-43 1 CL0221
Cotton_A_03209_CDS 370 438 370 441 PF02714.15 RSN1_7TM Family 1 70 274 55.4 5.4e-15 1 CL0416
Cotton_A_07667_CDS 163 312 162 318 PF00160.21 Pro_isomerase Domain 2 152 158 48.5 1.1e-12 1 CL0475
Cotton_A_22058_CDS 56 288 56 289 PF09459.10 EB_dh Domain 1 248 249 84.7 9.3e-24 1 CL0159
Cotton_A_20617_CDS 64 116 63 116 PF14416.6 PMR5N Domain 2 53 53 70.5 1.1e-19 1 No_clan
Cotton_A_20617_CDS 117 402 117 403 PF13839.6 PC-Esterase Family 1 282 283 294.9 7.8e-88 1 CL0264
Cotton_A_13036_CDS 37 531 37 533 PF00118.24 Cpn60_TCP1 Family 1 488 491 517.2 4e-155 1 No_clan
Cotton_A_23165_CDS 179 224 177 237 PF00170.21 bZIP_1 Family 5 50 64 39.0 6.3e-10 1 CL0018
Cotton_A_19339_CDS 1 132 1 132 PF00125.24 Histone Domain 1 131 131 178.3 8.2e-53 1 CL0012
Cotton_A_26268_CDS 29 108 29 109 PF13774.6 Longin Domain 1 83 84 83.3 9.2e-24 1 No_clan
Cotton_A_26268_CDS 133 187 121 188 PF00957.21 Synaptobrevin Family 14 68 89 69.4 1.6e-19 1 CL0445
Cotton_A_21307_CDS 26 136 15 144 PF00999.21 Na_H_Exchanger Family 5 105 381 33.5 1.9e-08 1 CL0064
Cotton_A_04356_CDS 277 432 265 439 PF00201.18 UDPGT Family 277 418 499 91.5 5.2e-26 1 CL0113
Cotton_A_12547_CDS 56 228 53 231 PF00083.24 Sugar_tr Family 4 189 452 128.3 3.6e-37 1 CL0015
Cotton_A_06907_CDS 17 131 13 137 PF00067.22 p450 Domain 6 120 463 47.4 1.2e-12 1 No_clan
Cotton_A_25737_CDS 1 278 1 278 PF06246.12 Isy1 Family 1 255 255 305.1 3.9e-91 1 No_clan
Cotton_A_32444_CDS 2 146 1 150 PF00078.27 RVT_1 Family 77 206 222 47.8 1.2e-12 1 CL0027
Cotton_A_36255_CDS 31 151 30 151 PF02788.16 RuBisCO_large_N Domain 2 120 120 153.7 2.2e-45 1 No_clan
Cotton_A_36255_CDS 161 469 161 469 PF00016.20 RuBisCO_large Domain 1 299 299 422.7 7.3e-127 1 No_clan
Cotton_A_17698_CDS 277 501 273 526 PF00928.21 Adap_comp_sub Family 7 236 264 108.4 3.9e-31 1 CL0448
Cotton_A_10138_CDS 131 370 129 374 PF00481.21 PP2C Family 3 254 258 199.8 5.7e-59 1 CL0238
Cotton_A_15129_CDS 212 252 211 257 PF12799.7 LRR_4 Repeat 2 40 44 27.2 3.8e-06 1 CL0022
Cotton_A_04840_CDS 4 146 3 146 PF01280.20 Ribosomal_L19e Family 2 144 144 219.1 2.1e-65 1 No_clan
Cotton_A_03464_CDS 26 87 26 87 PF00226.31 DnaJ Domain 1 63 63 85.8 1.6e-24 1 CL0392
Cotton_A_05882_CDS 3 37 1 37 PF00056.23 Ldh_1_N Family 111 141 141 21.2 0.00024 1 CL0063
Cotton_A_31964_CDS 115 210 88 211 PF00583.25 Acetyltransf_1 Family 26 116 117 53.0 3.7e-14 1 CL0257
Cotton_A_37181_CDS 3 83 1 85 PF13456.6 RVT_3 Domain 41 122 124 52.9 3.1e-14 1 CL0219
Cotton_A_07105_CDS 412 773 411 773 PF03514.14 GRAS Family 2 374 374 319.7 2.3e-95 1 CL0063
Cotton_A_10887_CDS 29 69 27 74 PF00646.33 F-box Domain 3 43 48 27.8 1.6e-06 1 CL0271
Cotton_A_10887_CDS 125 167 123 168 PF01344.25 Kelch_1 Repeat 3 45 46 45.0 5.9e-12 1 CL0186
Cotton_A_10887_CDS 171 216 170 218 PF01344.25 Kelch_1 Repeat 2 44 46 46.4 2.2e-12 1 CL0186
Cotton_A_12425_CDS 7 49 2 80 PF03468.14 XS Domain 50 92 113 30.3 4.1e-07 1 CL0221
Cotton_A_39493_CDS 5 85 2 87 PF13456.6 RVT_3 Domain 41 122 124 45.1 7.6e-12 1 CL0219
Cotton_A_11994_CDS 54 245 53 248 PF00149.28 Metallophos Domain 2 201 204 123.2 1.9e-35 1 CL0163
Cotton_A_40088_CDS 38 83 33 84 PF17921.1 Integrase_H2C2 Domain 13 57 58 55.3 5.2e-15 1 CL0361
Cotton_A_08189_CDS 24 321 23 324 PF00909.21 Ammonium_transp Family 2 300 399 193.0 6.5e-57 1 No_clan
Cotton_A_13069_CDS 130 178 130 178 PF13041.6 PPR_2 Repeat 1 50 50 35.7 7.2e-09 1 CL0020
Cotton_A_13069_CDS 199 249 199 250 PF13041.6 PPR_2 Repeat 1 48 50 46.2 3.7e-12 1 CL0020
Cotton_A_13069_CDS 269 300 268 301 PF12854.7 PPR_1 Repeat 2 33 34 30.5 2e-07 1 CL0020
Cotton_A_13069_CDS 307 354 307 356 PF13041.6 PPR_2 Repeat 1 48 50 50.7 1.5e-13 1 CL0020
Cotton_A_13069_CDS 381 410 380 410 PF01535.20 PPR Family 2 31 31 15.3 0.017 1 CL0020
Cotton_A_30982_CDS 1 422 1 426 PF06219.12 DUF1005 Family 1 433 437 592.8 4.3e-178 1 No_clan
Cotton_A_21132_CDS 60 143 50 158 PF14226.6 DIOX_N Family 19 94 118 44.8 1.9e-11 1 CL0029
Cotton_A_21132_CDS 208 302 203 302 PF03171.20 2OG-FeII_Oxy Domain 6 101 101 83.2 1.4e-23 1 CL0029
Cotton_A_20226_CDS 126 281 122 285 PF03167.19 UDG Domain 5 151 155 85.6 3.3e-24 1 No_clan
Cotton_A_25459_CDS 11 55 9 56 PF00646.33 F-box Domain 3 47 48 22.1 9.8e-05 1 CL0271
Cotton_A_10484_CDS 23 346 23 346 PF00332.18 Glyco_hydro_17 Domain 1 313 313 227.6 2.7e-67 1 CL0058
Cotton_A_10484_CDS 365 433 365 434 PF07983.13 X8 Domain 1 75 76 57.5 1.6e-15 1 No_clan
Cotton_A_10739_CDS 36 280 34 281 PF14498.6 Glyco_hyd_65N_2 Domain 3 236 237 227.4 2.1e-67 1 CL0103
Cotton_A_18076_CDS 55 128 52 131 PF01336.25 tRNA_anti-codon Domain 4 73 76 34.5 1.5e-08 1 CL0021
Cotton_A_18076_CDS 149 211 147 223 PF00152.20 tRNA-synt_2 Domain 3 65 314 45.8 4e-12 1 CL0040
Cotton_A_18076_CDS 241 280 238 289 PF00458.20 WHEP-TRS Domain 5 44 53 31.8 1.1e-07 1 CL0600
Cotton_A_18076_CDS 299 562 276 564 PF00152.20 tRNA-synt_2 Domain 70 312 314 214.8 1.4e-63 1 CL0040
Cotton_A_25908_CDS 56 135 56 135 PF01016.19 Ribosomal_L27 Family 1 79 79 122.6 4.8e-36 1 No_clan
Cotton_A_34456_CDS 49 208 42 209 PF13668.6 Ferritin_2 Domain 11 135 136 43.9 2.5e-11 1 CL0044
Cotton_A_20964_CDS 192 250 190 251 PF04117.12 Mpv17_PMP22 Family 3 61 62 60.4 1.5e-16 1 No_clan
Cotton_A_29915_CDS 178 294 178 294 PF02770.19 Acyl-CoA_dh_M Domain 1 97 97 55.1 6.6e-15 1 No_clan
Cotton_A_29915_CDS 326 485 322 486 PF00441.24 Acyl-CoA_dh_1 Domain 5 149 150 43.0 5e-11 1 CL0087
Cotton_A_29915_CDS 531 675 531 686 PF01756.19 ACOX Family 1 145 180 84.2 7.8e-24 1 CL0087
Cotton_A_06271_CDS 5 87 5 100 PF18052.1 Rx_N Domain 1 83 93 77.6 6.7e-22 1 No_clan
Cotton_A_37520_CDS 15 78 15 79 PF13499.6 EF-hand_7 Domain 1 70 71 39.0 8.2e-10 1 CL0220
Cotton_A_33342_CDS 49 171 49 236 PF03634.13 TCP Family 1 123 156 133.4 1e-38 1 No_clan
Cotton_A_09336_CDS 28 62 28 66 PF02736.19 Myosin_N Domain 1 35 40 38.2 9.4e-10 1 CL0010
Cotton_A_09336_CDS 82 402 82 412 PF00063.21 Myosin_head Domain 1 319 677 413.9 1.1e-123 1 CL0023
Cotton_A_17718_CDS 32 168 31 169 PF08718.11 GLTP Domain 2 148 149 124.2 5.1e-36 1 No_clan
Cotton_A_16620_CDS 116 161 114 179 PF01842.25 ACT Domain 3 51 67 27.6 1.8e-06 1 CL0070
Cotton_A_16620_CDS 246 303 245 315 PF01842.25 ACT Domain 2 60 67 28.5 9.8e-07 1 CL0070
Cotton_A_16620_CDS 330 374 323 389 PF01842.25 ACT Domain 8 52 67 27.3 2.3e-06 1 CL0070
Cotton_A_05913_CDS 43 135 42 136 PF01657.17 Stress-antifung Family 2 93 95 61.4 1e-16 1 No_clan
Cotton_A_05913_CDS 159 246 151 247 PF01657.17 Stress-antifung Family 11 94 95 42.1 1e-10 1 No_clan
Cotton_A_33602_CDS 39 183 38 184 PF03018.14 Dirigent Family 2 147 148 164.1 1.8e-48 1 CL0650
Cotton_A_32945_CDS 175 362 175 363 PF01163.22 RIO1 Family 1 187 188 253.8 8.3e-76 1 CL0016
Cotton_A_31888_CDS 52 111 47 111 PF03732.17 Retrotrans_gag Family 35 96 96 31.4 1.7e-07 1 CL0523
Cotton_A_14622_CDS 116 403 115 405 PF16363.5 GDP_Man_Dehyd Domain 2 330 332 193.9 4.6e-57 1 CL0063
Cotton_A_08284_CDS 14 75 13 75 PF00462.24 Glutaredoxin Domain 2 60 60 38.2 1.3e-09 1 CL0172
Cotton_A_31598_CDS 166 209 165 209 PF13639.6 zf-RING_2 Domain 2 44 44 45.9 5.3e-12 1 CL0229
Cotton_A_29536_CDS 271 338 269 339 PF04542.14 Sigma70_r2 Domain 3 70 71 57.9 6.3e-16 1 CL0123
Cotton_A_29536_CDS 348 418 348 423 PF04539.16 Sigma70_r3 Family 1 73 78 51.4 8.8e-14 1 CL0123
Cotton_A_29536_CDS 445 494 445 494 PF04545.16 Sigma70_r4 Domain 4 50 50 38.9 4.5e-10 1 CL0123
Cotton_A_25789_CDS 10 79 9 81 PF16884.5 ADH_N_2 Family 2 64 108 31.8 1e-07 1 CL0296
Cotton_A_32691_CDS 8 85 8 85 PF10159.9 MMtag Domain 1 78 78 117.5 2.4e-34 1 No_clan
Cotton_A_37826_CDS 18 74 17 75 PF02701.15 zf-Dof Family 2 58 59 116.3 4.8e-34 1 No_clan
Cotton_A_38272_CDS 51 224 51 225 PF07798.11 DUF1640 Family 1 174 175 234.4 8e-70 1 No_clan
Cotton_A_35704_CDS 336 595 334 595 PF00069.25 Pkinase Domain 3 264 264 227.7 1.6e-67 1 CL0016
Cotton_A_32557_CDS 47 303 47 303 PF00069.25 Pkinase Domain 1 264 264 224.1 2e-66 1 CL0016
Cotton_A_32557_CDS 335 392 332 392 PF03822.14 NAF Domain 4 54 54 62.4 3.3e-17 1 CL0573
Cotton_A_24180_CDS 5 32 5 34 PF00641.18 zf-RanBP Domain 1 28 30 30.5 1.6e-07 1 CL0167
Cotton_A_24180_CDS 48 76 48 77 PF00641.18 zf-RanBP Domain 1 29 30 30.9 1.2e-07 1 CL0167
Cotton_A_24180_CDS 285 313 285 314 PF00641.18 zf-RanBP Domain 1 29 30 28.6 6.2e-07 1 CL0167
Cotton_A_19299_CDS 22 100 22 107 PF08700.11 Vps51 Family 1 79 87 48.4 7.2e-13 1 CL0295
Cotton_A_19299_CDS 143 349 139 350 PF16528.5 Exo84_C Domain 5 204 205 56.5 3.1e-15 1 CL0295
Cotton_A_14135_CDS 154 339 154 340 PF03193.16 RsgA_GTPase Domain 1 166 167 194.8 9.3e-58 1 CL0023
Cotton_A_02634_CDS 12 34 11 34 PF01754.16 zf-A20 Family 2 24 24 43.7 1.9e-11 1 No_clan
Cotton_A_02634_CDS 97 131 95 132 PF01428.16 zf-AN1 Family 5 39 40 41.0 1.5e-10 1 No_clan
Cotton_A_04183_CDS 7 98 7 99 PF03195.14 LOB Family 1 98 99 128.2 1.4e-37 1 No_clan
Cotton_A_30929_CDS 67 154 67 154 PF03330.18 DPBB_1 Domain 1 83 83 75.0 4.1e-21 1 CL0199
Cotton_A_30929_CDS 165 242 165 242 PF01357.21 Pollen_allerg_1 Domain 1 80 80 89.6 9.9e-26 1 CL0159
Cotton_A_36239_CDS 42 160 42 198 PF00856.28 SET Family 1 95 169 26.3 8.4e-06 1 No_clan
Cotton_A_33033_CDS 30 77 28 79 PF13920.6 zf-C3HC4_3 Domain 3 48 50 37.7 1.4e-09 1 CL0229
Cotton_A_11726_CDS 361 930 361 930 PF05183.12 RdRP Family 1 586 586 598.4 1.5e-179 1 No_clan
Cotton_A_28953_CDS 18 67 17 68 PF04588.13 HIG_1_N Family 2 51 52 40.3 2.7e-10 1 No_clan
Cotton_A_37128_CDS 37 203 37 210 PF00657.22 Lipase_GDSL Family 1 105 200 29.9 5.1e-07 1 CL0264
Cotton_A_00487_CDS 128 153 128 153 PF13912.6 zf-C2H2_6 Domain 1 26 27 37.7 1.4e-09 1 CL0361
Cotton_A_00487_CDS 195 219 195 220 PF13912.6 zf-C2H2_6 Domain 1 25 27 45.8 4.1e-12 1 CL0361
Cotton_A_03151_CDS 11 138 11 139 PF12165.8 Alfin Family 1 126 127 216.7 5.9e-65 1 No_clan
Cotton_A_03151_CDS 199 247 198 248 PF00628.29 PHD Domain 2 51 52 40.4 2e-10 1 CL0390
Cotton_A_05725_CDS 3 39 1 42 PF18511.1 F-box_5 Domain 3 39 42 26.9 2.6e-06 1 CL0271
Cotton_A_05725_CDS 382 402 381 404 PF13516.6 LRR_6 Repeat 3 22 24 16.5 0.006 1 CL0022
Cotton_A_09488_CDS 67 141 66 143 PF03061.22 4HBT Domain 2 77 79 63.7 1.5e-17 1 CL0050
Cotton_A_32779_CDS 95 185 95 190 PF16679.5 CDT1_C Domain 1 91 96 73.1 1.9e-20 1 CL0123
Cotton_A_31584_CDS 1 94 1 102 PF00025.21 Arf Domain 21 114 175 133.8 4.2e-39 1 CL0023
Cotton_A_04300_CDS 28 72 24 74 PF16544.5 STAR_dimer Domain 6 50 53 38.5 6.3e-10 1 No_clan
Cotton_A_04300_CDS 144 185 135 196 PF00013.29 KH_1 Domain 10 43 66 24.6 1.6e-05 1 CL0007
Cotton_A_25214_CDS 1 405 1 419 PF02458.15 Transferase Family 29 400 434 298.3 7.6e-89 1 CL0149
Cotton_A_07981_CDS 33 404 33 404 PF00262.18 Calreticulin Family 1 367 367 469.2 7.7e-141 1 CL0004
Cotton_A_27469_CDS 116 438 116 444 PF00295.17 Glyco_hydro_28 Domain 1 319 325 332.1 3.2e-99 1 CL0268
Cotton_A_38223_CDS 188 261 188 262 PF03110.14 SBP Domain 1 74 75 106.9 4.9e-31 1 No_clan
Cotton_A_40808_CDS 14 181 14 188 PF00244.20 14-3-3 Domain 1 165 222 220.8 1.6e-65 1 No_clan
Cotton_A_29259_CDS 66 422 66 422 PF03372.23 Exo_endo_phos Domain 1 233 233 52.2 5.8e-14 1 CL0530
Cotton_A_40775_CDS 55 205 55 207 PF00190.22 Cupin_1 Domain 1 149 151 101.4 3.5e-29 1 CL0029
Cotton_A_40775_CDS 355 494 350 496 PF00190.22 Cupin_1 Domain 7 149 151 127.4 3.2e-37 1 CL0029
Cotton_A_32306_CDS 56 163 31 163 PF08613.11 Cyclin Family 51 161 161 121.8 3.5e-35 1 CL0065
Cotton_A_25271_CDS 5 71 4 71 PF17181.4 EPF Family 2 53 53 59.1 3.1e-16 1 No_clan
Cotton_A_27573_CDS 96 250 96 253 PF00005.27 ABC_tran Domain 1 134 137 65.3 7.7e-18 1 CL0023
Cotton_A_03289_CDS 34 106 23 111 PF00153.27 Mito_carr Family 14 91 97 57.9 7.2e-16 1 No_clan
Cotton_A_03289_CDS 124 211 120 214 PF00153.27 Mito_carr Family 5 93 97 66.1 1.9e-18 1 No_clan
Cotton_A_03289_CDS 234 285 229 297 PF00153.27 Mito_carr Family 7 62 97 37.9 1.3e-09 1 No_clan
Cotton_A_05345_CDS 72 215 72 215 PF09588.10 YqaJ Domain 1 148 148 70.3 1.9e-19 1 CL0236
Cotton_A_24639_CDS 78 175 76 178 PF06268.13 Fascin Domain 3 98 111 25.5 1.1e-05 1 CL0066
Cotton_A_24639_CDS 231 487 213 488 PF00150.18 Cellulase Domain 27 280 281 82.4 3.5e-23 1 CL0058
Cotton_A_11985_CDS 16 91 12 98 PF00153.27 Mito_carr Family 7 90 97 55.3 4.5e-15 1 No_clan
Cotton_A_11985_CDS 102 197 101 199 PF00153.27 Mito_carr Family 2 95 97 66.8 1.2e-18 1 No_clan
Cotton_A_11985_CDS 209 292 203 296 PF00153.27 Mito_carr Family 10 92 97 49.9 2.2e-13 1 No_clan
Cotton_A_21090_CDS 28 53 26 59 PF00023.30 Ank Repeat 3 26 32 26.2 7.4e-06 1 CL0465
Cotton_A_21090_CDS 108 190 104 230 PF13962.6 PGG Domain 5 87 116 37.1 2.3e-09 1 No_clan
Cotton_A_11903_CDS 9 227 9 266 PF00069.25 Pkinase Domain 1 212 264 96.9 1.3e-27 1 CL0016
Cotton_A_26856_CDS 408 481 408 486 PF00069.25 Pkinase Domain 1 72 264 38.2 1e-09 1 CL0016
Cotton_A_26856_CDS 486 614 480 618 PF00069.25 Pkinase Domain 137 258 264 61.0 1.1e-16 1 CL0016
Cotton_A_10382_CDS 119 244 119 245 PF13837.6 Myb_DNA-bind_4 Domain 1 89 90 80.3 9.9e-23 1 CL0123
Cotton_A_20136_CDS 46 211 46 211 PF01965.24 DJ-1_PfpI Domain 1 165 165 141.1 2.7e-41 1 CL0014
Cotton_A_20136_CDS 252 414 251 415 PF01965.24 DJ-1_PfpI Domain 2 164 165 152.2 1.1e-44 1 CL0014
Cotton_A_21190_CDS 328 475 327 483 PF00069.25 Pkinase Domain 2 146 264 122.5 2e-35 1 CL0016
Cotton_A_21190_CDS 560 639 548 640 PF00069.25 Pkinase Domain 154 244 264 52.8 3.4e-14 1 CL0016
Cotton_A_00096_CDS 55 77 53 77 PF01535.20 PPR Family 9 31 31 12.1 0.18 1 CL0020
Cotton_A_00096_CDS 116 142 116 143 PF01535.20 PPR Family 4 30 31 17.1 0.0046 1 CL0020
Cotton_A_00096_CDS 145 174 144 174 PF01535.20 PPR Family 2 31 31 25.3 1.1e-05 1 CL0020
Cotton_A_00096_CDS 243 289 242 290 PF13041.6 PPR_2 Repeat 2 48 50 31.4 1.5e-07 1 CL0020
Cotton_A_00096_CDS 347 372 346 376 PF01535.20 PPR Family 2 27 31 19.7 0.00067 1 CL0020
Cotton_A_00096_CDS 444 492 444 493 PF13041.6 PPR_2 Repeat 1 49 50 39.6 4.5e-10 1 CL0020
Cotton_A_00096_CDS 520 543 518 545 PF01535.20 PPR Family 3 26 31 15.5 0.015 1 CL0020
Cotton_A_00096_CDS 620 740 618 741 PF14432.6 DYW_deaminase Family 3 126 127 99.3 1.4e-28 1 CL0109
Cotton_A_11015_CDS 234 458 234 459 PF10189.9 Ints3 Family 1 224 225 308.5 2.1e-92 1 No_clan
Cotton_A_13565_CDS 53 77 50 79 PF01535.20 PPR Family 5 29 31 11.6 0.27 1 CL0020
Cotton_A_13565_CDS 81 110 80 110 PF01535.20 PPR Family 2 31 31 16.9 0.0055 1 CL0020
Cotton_A_13565_CDS 181 211 181 211 PF01535.20 PPR Family 1 31 31 25.0 1.4e-05 1 CL0020
Cotton_A_13565_CDS 254 280 251 281 PF01535.20 PPR Family 4 30 31 21.1 0.00025 1 CL0020
Cotton_A_13565_CDS 282 308 282 312 PF01535.20 PPR Family 1 27 31 22.3 0.0001 1 CL0020
Cotton_A_39059_CDS 31 179 30 183 PF00106.25 adh_short Domain 2 145 195 92.2 2.8e-26 1 CL0063
Cotton_A_03577_CDS 333 377 333 377 PF13639.6 zf-RING_2 Domain 1 44 44 35.7 8.2e-09 1 CL0229
Cotton_A_14655_CDS 14 58 13 60 PF00249.31 Myb_DNA-binding Domain 2 42 46 26.7 4.7e-06 1 CL0123
Cotton_A_07966_CDS 5 117 5 118 PF04057.12 Rep-A_N Domain 1 100 101 86.8 8.2e-25 1 CL0021
Cotton_A_07966_CDS 287 359 287 377 PF01336.25 tRNA_anti-codon Domain 1 64 76 41.3 1.1e-10 1 CL0021
Cotton_A_07966_CDS 397 501 397 501 PF16900.5 REPA_OB_2 Domain 1 98 98 100.6 3.5e-29 1 CL0021
Cotton_A_07966_CDS 558 709 558 709 PF08646.10 Rep_fac-A_C Family 1 146 146 176.3 2.9e-52 1 CL0021
Cotton_A_20314_CDS 9 80 9 81 PF00173.28 Cyt-b5 Domain 1 73 74 94.9 2.4e-27 1 No_clan
Cotton_A_24164_CDS 21 134 21 135 PF03859.16 CG-1 Domain 1 115 116 171.6 4.3e-51 1 No_clan
Cotton_A_24164_CDS 479 552 478 564 PF01833.24 TIG Domain 3 73 85 26.9 3.6e-06 1 CL0159
Cotton_A_24164_CDS 883 902 883 903 PF00612.27 IQ Motif 1 20 21 18.1 0.0016 1 CL0220
Cotton_A_24164_CDS 907 926 906 926 PF00612.27 IQ Motif 2 21 21 20.7 0.00022 1 CL0220
Cotton_A_32614_CDS 115 343 114 343 PF01798.18 Nop Family 2 230 230 246.0 3.2e-73 1 No_clan
Cotton_A_32614_CDS 351 468 350 468 PF09785.9 Prp31_C Family 2 120 120 145.3 1.5e-42 1 No_clan
Cotton_A_05189_CDS 177 458 112 465 PF00295.17 Glyco_hydro_28 Domain 51 320 325 150.8 4.6e-44 1 CL0268
Cotton_A_02624_CDS 8 267 8 267 PF00069.25 Pkinase Domain 1 264 264 212.1 9e-63 1 CL0016
Cotton_A_29974_CDS 17 311 17 311 PF07993.12 NAD_binding_4 Family 1 257 257 262.7 2.7e-78 1 CL0063
Cotton_A_29974_CDS 388 480 387 482 PF03015.19 Sterile Family 2 86 93 59.3 3.2e-16 1 No_clan
Cotton_A_08692_CDS 198 471 196 473 PF00069.25 Pkinase Domain 4 260 264 186.7 5.1e-55 1 CL0016
Cotton_A_15656_CDS 239 290 239 290 PF00010.26 HLH Domain 1 53 53 40.5 1.9e-10 1 No_clan
Cotton_A_16417_CDS 19 97 19 97 PF03134.19 TB2_DP1_HVA22 Family 1 77 77 83.9 5.4e-24 1 No_clan
Cotton_A_23846_CDS 389 477 319 481 PF03219.14 TLC Family 396 487 491 29.2 3.8e-07 1 CL0015
Cotton_A_14579_CDS 357 487 357 488 PF00004.29 AAA Domain 1 131 132 124.1 4.7e-36 1 CL0023
Cotton_A_14579_CDS 510 546 510 554 PF17862.1 AAA_lid_3 Domain 1 37 45 38.0 1e-09 1 CL0671
Cotton_A_01326_CDS 73 211 73 213 PF01565.23 FAD_binding_4 Domain 1 136 139 91.1 5e-26 1 CL0077
Cotton_A_01326_CDS 471 530 471 530 PF08031.12 BBE Domain 1 46 46 76.0 1.8e-21 1 CL0277
Cotton_A_20293_CDS 83 499 28 506 PF00067.22 p450 Domain 45 455 463 235.9 8e-70 1 No_clan
Cotton_A_27102_CDS 13 132 12 134 PF11595.8 DUF3245 Family 2 147 149 53.4 3.8e-14 1 No_clan
Cotton_A_31623_CDS 1 86 1 93 PF00361.20 Proton_antipo_M Family 205 291 293 63.9 1.3e-17 1 CL0425
Cotton_A_31105_CDS 38 360 38 360 PF03492.15 Methyltransf_7 Family 1 334 334 367.7 5.4e-110 1 CL0063
Cotton_A_19880_CDS 10 119 2 120 PF00407.19 Bet_v_1 Domain 44 150 151 48.7 7.1e-13 1 CL0209
Cotton_A_00427_CDS 107 300 107 301 PF03741.16 TerC Family 1 180 181 161.1 2.1e-47 1 CL0292
Cotton_A_41014_CDS 60 106 60 108 PF00628.29 PHD Domain 1 50 52 42.4 4.9e-11 1 CL0390
Cotton_A_41014_CDS 189 359 58 359 PF00856.28 SET Family 80 169 169 31.1 2.8e-07 1 No_clan
Cotton_A_02961_CDS 19 81 19 84 PF01918.21 Alba Family 1 64 67 64.7 4.9e-18 1 CL0441
Cotton_A_35158_CDS 175 196 174 198 PF00642.24 zf-CCCH Family 3 25 27 28.1 1.3e-06 1 CL0537
Cotton_A_35158_CDS 238 257 234 257 PF00642.24 zf-CCCH Family 6 26 27 22.5 7.8e-05 1 CL0537
Cotton_A_03974_CDS 44 139 44 152 PF14226.6 DIOX_N Family 1 98 118 85.7 3.9e-24 1 CL0029
Cotton_A_03974_CDS 198 290 194 290 PF03171.20 2OG-FeII_Oxy Domain 5 101 101 68.0 7.9e-19 1 CL0029
Cotton_A_33569_CDS 32 103 32 104 PF04564.15 U-box Domain 1 72 73 71.6 4.4e-20 1 CL0229
Cotton_A_14180_CDS 127 161 126 162 PF03638.15 TCR Domain 2 37 38 36.9 3.4e-09 1 No_clan
Cotton_A_14180_CDS 212 247 211 248 PF03638.15 TCR Domain 2 37 38 49.0 5.4e-13 1 No_clan
Cotton_A_05514_CDS 276 430 257 445 PF00201.18 UDPGT Family 274 412 499 73.3 1.7e-20 1 CL0113
Cotton_A_36537_CDS 10 57 10 57 PF00319.18 SRF-TF Domain 1 48 48 89.0 9.7e-26 1 No_clan
Cotton_A_36537_CDS 83 160 80 162 PF01486.17 K-box Family 4 81 93 57.7 9.9e-16 1 No_clan
Cotton_A_10220_CDS 20 77 20 77 PF08031.12 BBE Domain 1 46 46 75.0 3.6e-21 1 CL0277
Cotton_A_27635_CDS 19 352 17 353 PF03214.13 RGP Family 3 341 342 593.5 1.2e-178 1 CL0110
Cotton_A_29603_CDS 29 99 29 99 PF00076.22 RRM_1 Domain 1 70 70 64.6 5.3e-18 1 CL0221
Cotton_A_29603_CDS 117 185 117 186 PF00076.22 RRM_1 Domain 1 69 70 76.4 1.1e-21 1 CL0221
Cotton_A_29603_CDS 208 276 208 277 PF00076.22 RRM_1 Domain 1 69 70 83.2 8.4e-24 1 CL0221
Cotton_A_29603_CDS 311 379 311 380 PF00076.22 RRM_1 Domain 1 69 70 71.2 4.7e-20 1 CL0221
Cotton_A_29603_CDS 554 620 553 620 PF00658.18 PABP Family 2 68 68 95.1 2.1e-27 1 No_clan
Cotton_A_01048_CDS 18 82 6 84 PF01150.17 GDA1_CD39 Family 47 111 423 59.0 3.3e-16 1 CL0108
Cotton_A_37117_CDS 130 161 125 180 PF07939.11 DUF1685 Family 6 36 60 25.6 7.6e-06 1 No_clan
Cotton_A_15535_CDS 45 237 44 240 PF00149.28 Metallophos Domain 2 201 204 129.0 3.2e-37 1 CL0163
Cotton_A_22204_CDS 1 93 1 102 PF12457.8 TIP_N Family 4 94 104 47.0 2.7e-12 1 No_clan
Cotton_A_04918_CDS 23 75 21 80 PF00403.26 HMA Domain 3 54 62 46.5 3.8e-12 1 No_clan
Cotton_A_04918_CDS 121 168 119 190 PF00403.26 HMA Domain 2 53 62 46.6 3.4e-12 1 No_clan
Cotton_A_21836_CDS 9 68 3 68 PF12609.8 DUF3774 Family 12 74 74 46.2 6.9e-12 1 No_clan
Cotton_A_34362_CDS 279 370 277 370 PF18808.1 Importin_rep_4 Repeat 3 90 90 77.7 6.1e-22 1 No_clan
Cotton_A_34362_CDS 963 990 963 991 PF02985.22 HEAT Repeat 2 29 31 25.7 8e-06 1 CL0020
Cotton_A_18485_CDS 55 250 54 251 PF00849.22 PseudoU_synth_2 Family 2 159 160 88.7 4.2e-25 1 CL0649
Cotton_A_32879_CDS 28 66 26 66 PF08263.12 LRRNT_2 Family 4 41 41 39.7 4.5e-10 1 No_clan
Cotton_A_32879_CDS 151 172 151 173 PF00560.33 LRR_1 Repeat 1 22 23 9.9 1.3 1 CL0022
Cotton_A_32879_CDS 175 197 175 197 PF00560.33 LRR_1 Repeat 1 23 23 10.2 0.97 1 CL0022
Cotton_A_32879_CDS 249 270 248 270 PF00560.33 LRR_1 Repeat 2 23 23 13.9 0.062 1 CL0022
Cotton_A_32879_CDS 417 433 416 433 PF13516.6 LRR_6 Repeat 2 18 24 10.5 0.51 1 CL0022
Cotton_A_32879_CDS 565 622 562 622 PF13855.6 LRR_8 Repeat 5 61 61 33.4 2.9e-08 1 CL0022
Cotton_A_32879_CDS 635 655 635 657 PF00560.33 LRR_1 Repeat 1 21 23 12.0 0.25 1 CL0022
Cotton_A_32879_CDS 770 1037 768 1039 PF00069.25 Pkinase Domain 3 260 264 144.3 4.2e-42 1 CL0016
Cotton_A_32565_CDS 65 140 65 141 PF03101.15 FAR1 Domain 1 89 90 47.9 1.6e-12 1 CL0274
Cotton_A_32565_CDS 271 362 270 364 PF10551.9 MULE Domain 2 94 96 100.5 5.4e-29 1 CL0219
Cotton_A_32565_CDS 548 582 536 584 PF04434.17 SWIM Domain 1 38 40 44.6 8.1e-12 1 No_clan
Cotton_A_03222_CDS 40 191 39 192 PF00190.22 Cupin_1 Domain 2 150 151 113.0 9.3e-33 1 CL0029
Cotton_A_03222_CDS 317 463 316 465 PF00190.22 Cupin_1 Domain 2 149 151 110.8 4.3e-32 1 CL0029
Cotton_A_05740_CDS 21 129 21 137 PF02365.15 NAM Family 1 105 126 62.5 7.3e-17 1 No_clan
Cotton_A_06418_CDS 93 152 91 153 PF00069.25 Pkinase Domain 3 64 264 34.0 1.9e-08 1 CL0016
Cotton_A_04102_CDS 37 76 37 77 PF00514.23 Arm Repeat 1 40 41 24.9 1.4e-05 1 CL0020
Cotton_A_04102_CDS 211 249 206 249 PF00514.23 Arm Repeat 6 41 41 26.5 4.5e-06 1 CL0020
Cotton_A_06742_CDS 13 90 4 92 PF00125.24 Histone Domain 51 129 131 54.1 1.9e-14 1 CL0012
Cotton_A_06742_CDS 93 126 93 127 PF16211.5 Histone_H2A_C Family 1 34 35 67.1 8.2e-19 1 No_clan
Cotton_A_28969_CDS 35 181 34 181 PF04043.15 PMEI Domain 4 154 154 61.2 1.5e-16 1 No_clan
Cotton_A_28969_CDS 250 549 249 549 PF01095.19 Pectinesterase Family 2 298 298 481.0 8.8e-145 1 CL0268
Cotton_A_13083_CDS 21 151 17 152 PF02466.19 Tim17 Family 6 110 111 35.2 1.3e-08 1 No_clan
Cotton_A_20431_CDS 33 99 33 100 PF12041.8 DELLA Domain 1 68 69 98.8 1.2e-28 1 No_clan
Cotton_A_20431_CDS 161 526 161 526 PF03514.14 GRAS Family 1 374 374 421.0 3.8e-126 1 CL0063
Cotton_A_28419_CDS 25 77 13 78 PF05498.11 RALF Family 12 64 65 45.0 1.6e-11 1 No_clan
Cotton_A_30644_CDS 38 208 16 235 PF00704.28 Glyco_hydro_18 Domain 24 186 312 62.9 4.1e-17 1 CL0058
Cotton_A_37822_CDS 107 204 88 206 PF03004.14 Transposase_24 Family 40 140 142 31.5 1.7e-07 1 No_clan
Cotton_A_12140_CDS 80 314 80 316 PF00899.21 ThiF Domain 1 242 244 206.2 5e-61 1 CL0063
Cotton_A_12140_CDS 359 461 358 462 PF00581.20 Rhodanese Domain 2 106 107 41.3 1.8e-10 1 CL0031
Cotton_A_03790_CDS 47 251 47 251 PF04720.12 PDDEXK_6 Family 1 221 221 222.1 8.4e-66 1 No_clan
Cotton_A_30592_CDS 21 177 12 182 PF04614.12 Pex19 Family 64 228 244 112.1 3.6e-32 1 No_clan
Cotton_A_18377_CDS 7 110 7 114 PF14226.6 DIOX_N Family 1 116 118 98.2 5.1e-28 1 CL0029
Cotton_A_18377_CDS 129 195 116 196 PF03171.20 2OG-FeII_Oxy Domain 24 85 101 40.1 4e-10 1 CL0029
Cotton_A_27432_CDS 99 398 97 399 PF03016.15 Exostosin Family 3 299 300 232.2 7.4e-69 1 No_clan
Cotton_A_10562_CDS 53 150 16 150 PF02466.19 Tim17 Family 31 111 111 50.7 1.9e-13 1 No_clan
Cotton_A_12647_CDS 26 97 6 101 PF02519.14 Auxin_inducible Family 18 86 90 81.2 4.7e-23 1 No_clan
Cotton_A_13447_CDS 192 398 191 398 PF14381.6 EDR1 Family 2 200 200 244.2 9.5e-73 1 CL0125
Cotton_A_13447_CDS 582 835 581 835 PF07714.17 Pkinase_Tyr Domain 2 259 259 230.2 2.5e-68 1 CL0016
Cotton_A_09328_CDS 87 377 71 381 PF00067.22 p450 Domain 29 324 463 161.6 2.6e-47 1 No_clan
Cotton_A_12608_CDS 22 447 20 448 PF00501.28 AMP-binding Family 3 422 423 324.9 6.2e-97 1 CL0378
Cotton_A_12608_CDS 456 536 456 536 PF13193.6 AMP-binding_C Domain 1 76 76 78.6 5.1e-22 1 CL0531
Cotton_A_00903_CDS 36 317 36 319 PF00067.22 p450 Domain 1 283 463 134.4 4.8e-39 1 No_clan
Cotton_A_05039_CDS 161 209 159 210 PF00847.20 AP2 Domain 3 53 54 52.6 4e-14 1 CL0081
Cotton_A_16111_CDS 24 117 24 142 PF04073.15 tRNA_edit Family 1 92 123 72.6 2.8e-20 1 No_clan
Cotton_A_08477_CDS 19 247 14 249 PF13561.6 adh_short_C2 Domain 4 232 234 193.1 5.2e-57 1 CL0063
Cotton_A_30815_CDS 35 515 16 545 PF10151.9 TMEM214 Family 30 465 659 60.8 8.7e-17 1 No_clan
Cotton_A_03428_CDS 146 198 128 198 PF08241.12 Methyltransf_11 Domain 40 96 96 32.8 8.2e-08 1 CL0063
Cotton_A_03428_CDS 318 478 318 505 PF05050.12 Methyltransf_21 Family 1 156 173 25.8 8.9e-06 1 CL0063
Cotton_A_37756_CDS 88 119 88 121 PF05553.11 DUF761 Family 1 31 36 39.4 3.2e-10 1 No_clan
Cotton_A_26483_CDS 34 157 34 157 PF10238.9 Eapp_C Family 1 149 149 145.2 1.4e-42 1 No_clan
Cotton_A_04598_CDS 16 75 16 76 PF00199.19 Catalase Domain 1 60 383 76.6 2e-21 1 No_clan
Cotton_A_04598_CDS 74 376 74 377 PF00199.19 Catalase Domain 79 382 383 452.5 1.2e-135 1 No_clan
Cotton_A_09199_CDS 10 105 10 108 PF03195.14 LOB Family 1 96 99 122.3 9.7e-36 1 No_clan
Cotton_A_19291_CDS 450 524 447 526 PF16561.5 AMPK1_CBM Family 4 78 85 69.2 2.6e-19 1 CL0369
Cotton_A_36226_CDS 6 146 4 147 PF01751.22 Toprim Family 4 102 103 57.8 1.1e-15 1 CL0413
Cotton_A_36226_CDS 162 572 161 573 PF01131.20 Topoisom_bac Family 2 412 413 352.4 3.4e-105 1 No_clan
Cotton_A_28727_CDS 38 354 38 354 PF00657.22 Lipase_GDSL Family 1 200 200 68.7 6.6e-19 1 CL0264
Cotton_A_05813_CDS 65 123 55 137 PF00472.20 RF-1 Family 11 70 116 67.3 1e-18 1 CL0337
Cotton_A_07708_CDS 1241 1294 1241 1338 PF01909.23 NTP_transf_2 Family 1 48 95 30.4 3.6e-07 1 CL0260
Cotton_A_11570_CDS 37 217 36 217 PF00227.26 Proteasome Domain 2 190 190 154.8 1.8e-45 1 CL0052
Cotton_A_09670_CDS 75 271 75 272 PF13419.6 HAD_2 Family 1 177 178 64.9 9.6e-18 1 CL0137
Cotton_A_29453_CDS 13 90 9 96 PF13456.6 RVT_3 Domain 39 118 124 53.3 2.3e-14 1 CL0219
Cotton_A_08533_CDS 11 70 11 70 PF06972.11 DUF1296 Family 1 60 60 102.6 9.1e-30 1 CL0214
Cotton_A_02029_CDS 10 190 9 190 PF05562.11 WCOR413 Family 2 183 183 293.1 8.3e-88 1 No_clan
Cotton_A_08607_CDS 19 115 17 139 PF13837.6 Myb_DNA-bind_4 Domain 3 88 90 47.0 2.5e-12 1 CL0123
Cotton_A_13811_CDS 2 59 1 60 PF07732.15 Cu-oxidase_3 Domain 60 118 119 74.2 8.2e-21 1 CL0026
Cotton_A_13811_CDS 77 100 71 102 PF07731.14 Cu-oxidase_2 Domain 112 135 137 25.6 8.4e-06 1 CL0026
Cotton_A_40144_CDS 75 102 61 103 PF00847.20 AP2 Domain 27 53 54 26.1 7.6e-06 1 CL0081
Cotton_A_22977_CDS 35 393 34 401 PF01490.18 Aa_trans Family 2 368 409 235.5 8.7e-70 1 CL0062
Cotton_A_13735_CDS 80 479 70 499 PF00067.22 p450 Domain 25 441 463 269.8 4.1e-80 1 No_clan
Cotton_A_36514_CDS 101 447 100 453 PF00224.21 PK Family 2 342 348 313.3 1.7e-93 1 CL0151
Cotton_A_36514_CDS 471 570 471 579 PF02887.16 PK_C Domain 1 103 117 85.0 4.1e-24 1 No_clan
Cotton_A_06967_CDS 69 423 68 424 PF01237.18 Oxysterol_BP Family 2 372 373 339.1 2.7e-101 1 No_clan
Cotton_A_10567_CDS 12 125 2 135 PF03514.14 GRAS Family 100 215 374 97.5 7.6e-28 1 CL0063
Cotton_A_01446_CDS 3 32 2 34 PF14803.6 Nudix_N_2 Domain 2 31 34 26.2 5.6e-06 1 CL0167
Cotton_A_01446_CDS 70 108 70 108 PF01096.18 TFIIS_C Domain 1 39 39 65.8 2.3e-18 1 CL0167
Cotton_A_18513_CDS 62 124 62 124 PF05498.11 RALF Family 1 65 65 107.0 6.8e-31 1 No_clan
Cotton_A_25587_CDS 90 381 90 382 PF07887.11 Calmodulin_bind Family 1 291 292 434.9 1.3e-130 1 No_clan
Cotton_A_20757_CDS 41 215 36 216 PF08787.11 Alginate_lyase2 Domain 4 235 236 57.6 1.7e-15 1 CL0004
Cotton_A_36368_CDS 3 93 3 112 PF14226.6 DIOX_N Family 1 97 118 68.3 9.2e-19 1 CL0029
Cotton_A_36368_CDS 156 192 150 216 PF03171.20 2OG-FeII_Oxy Domain 8 43 101 25.0 2.1e-05 1 CL0029
Cotton_A_27305_CDS 44 187 34 199 PF06017.13 Myosin_TH1 Family 24 173 187 113.3 1e-32 1 CL0266
Cotton_A_21382_CDS 3 74 3 74 PF00240.23 ubiquitin Domain 1 72 72 113.2 3.5e-33 1 CL0072
Cotton_A_21382_CDS 79 150 79 150 PF00240.23 ubiquitin Domain 1 72 72 113.2 3.5e-33 1 CL0072
Cotton_A_21382_CDS 155 226 155 226 PF00240.23 ubiquitin Domain 1 72 72 113.2 3.5e-33 1 CL0072
Cotton_A_00515_CDS 69 224 68 224 PF08534.10 Redoxin Domain 2 147 147 115.8 1.3e-33 1 CL0172
Cotton_A_09076_CDS 33 104 32 105 PF03330.18 DPBB_1 Domain 2 82 83 41.2 1.5e-10 1 CL0199
Cotton_A_17051_CDS 118 253 116 254 PF01565.23 FAD_binding_4 Domain 3 137 139 114.4 3.3e-33 1 CL0077
Cotton_A_17051_CDS 294 534 291 534 PF02913.19 FAD-oxidase_C Domain 4 250 250 193.7 4.1e-57 1 CL0277
Cotton_A_00289_CDS 97 158 93 159 PF04535.12 DUF588 Domain 5 73 150 46.0 4.6e-12 1 CL0396
Cotton_A_18215_CDS 93 119 93 120 PF01535.20 PPR Family 4 30 31 16.4 0.0078 1 CL0020
Cotton_A_18215_CDS 122 151 121 151 PF01535.20 PPR Family 2 31 31 17.6 0.0033 1 CL0020
Cotton_A_18215_CDS 194 217 191 221 PF01535.20 PPR Family 4 27 31 14.6 0.029 1 CL0020
Cotton_A_18215_CDS 219 266 219 268 PF13041.6 PPR_2 Repeat 1 48 50 32.3 8.2e-08 1 CL0020
Cotton_A_18215_CDS 295 319 292 321 PF01535.20 PPR Family 4 28 31 19.3 0.00095 1 CL0020
Cotton_A_18215_CDS 322 369 320 369 PF13041.6 PPR_2 Repeat 3 50 50 37.0 2.8e-09 1 CL0020
Cotton_A_18215_CDS 395 421 393 423 PF01535.20 PPR Family 3 29 31 23.6 4.1e-05 1 CL0020
Cotton_A_18215_CDS 422 468 421 470 PF13041.6 PPR_2 Repeat 2 48 50 50.5 1.8e-13 1 CL0020
Cotton_A_18215_CDS 496 520 495 522 PF01535.20 PPR Family 2 26 31 12.0 0.19 1 CL0020
Cotton_A_24747_CDS 120 163 119 163 PF13639.6 zf-RING_2 Domain 2 44 44 47.6 1.6e-12 1 CL0229
Cotton_A_01841_CDS 197 293 197 302 PF01712.19 dNK Domain 1 88 204 75.2 6.4e-21 1 CL0023
Cotton_A_27836_CDS 2 69 1 69 PF07911.13 DUF1677 Family 22 89 89 79.6 1.7e-22 1 No_clan
Cotton_A_32023_CDS 462 504 462 506 PF11331.8 zinc_ribbon_12 Family 1 43 45 71.2 4.3e-20 1 CL0167
Cotton_A_00630_CDS 42 107 40 108 PF03810.19 IBN_N Family 3 73 74 30.7 2.2e-07 1 CL0020
Cotton_A_00630_CDS 403 456 403 457 PF13513.6 HEAT_EZ Repeat 1 54 55 32.6 8e-08 1 CL0020
Cotton_A_00630_CDS 623 651 621 651 PF02985.22 HEAT Repeat 3 31 31 19.9 0.00057 1 CL0020
Cotton_A_18304_CDS 1 326 1 328 PF13968.6 DUF4220 Family 5 346 347 233.7 3.9e-69 1 No_clan
Cotton_A_18304_CDS 555 604 551 604 PF04578.13 DUF594 Family 6 55 55 78.9 1.5e-22 1 No_clan
Cotton_A_04393_CDS 219 412 219 412 PF08662.11 eIF2A Family 1 194 194 258.6 3.6e-77 1 CL0186
Cotton_A_06067_CDS 252 408 103 417 PF00201.18 UDPGT Family 259 409 499 126.1 1.7e-36 1 CL0113
Cotton_A_14347_CDS 1 108 1 108 PF04997.12 RNA_pol_Rpb1_1 Domain 206 312 312 100.5 1.1e-28 1 No_clan
Cotton_A_14347_CDS 110 158 110 169 PF00623.20 RNA_pol_Rpb1_2 Domain 1 49 166 33.3 5.3e-08 1 No_clan
Cotton_A_14347_CDS 173 250 158 252 PF00623.20 RNA_pol_Rpb1_2 Domain 87 164 166 93.4 1.8e-26 1 No_clan
Cotton_A_34702_CDS 44 356 43 357 PF00657.22 Lipase_GDSL Family 2 199 200 59.4 4.5e-16 1 CL0264
Cotton_A_15951_CDS 78 119 74 126 PF00170.21 bZIP_1 Family 5 50 64 35.3 9e-09 1 CL0018
Cotton_A_38903_CDS 5 84 1 84 PF00005.27 ABC_tran Domain 75 137 137 43.8 3.4e-11 1 CL0023
Cotton_A_03378_CDS 17 102 7 102 PF00168.30 C2 Domain 16 103 103 66.6 1.9e-18 1 CL0154
Cotton_A_03378_CDS 301 335 300 335 PF00614.22 PLDc Family 2 28 28 38.0 1.2e-09 1 CL0479
Cotton_A_03378_CDS 639 663 636 663 PF00614.22 PLDc Family 4 28 28 28.4 1.2e-06 1 CL0479
Cotton_A_03378_CDS 710 780 710 781 PF12357.8 PLD_C Family 1 71 72 104.0 3e-30 1 No_clan
Cotton_A_01630_CDS 249 458 246 461 PF07228.12 SpoIIE Family 5 189 193 37.6 2.1e-09 1 CL0238
Cotton_A_11953_CDS 29 85 28 86 PF02701.15 zf-Dof Family 2 58 59 115.2 1.1e-33 1 No_clan
Cotton_A_11284_CDS 10 327 10 327 PF16420.5 ATG7_N Domain 1 300 300 310.2 1.8e-92 1 No_clan
Cotton_A_11284_CDS 354 645 340 650 PF00899.21 ThiF Domain 13 239 244 139.8 9.4e-41 1 CL0063
Cotton_A_18870_CDS 10 227 9 264 PF00069.25 Pkinase Domain 2 212 264 95.8 2.7e-27 1 CL0016
Cotton_A_37254_CDS 23 277 23 277 PF00069.25 Pkinase Domain 1 264 264 248.7 6.3e-74 1 CL0016
Cotton_A_37254_CDS 332 388 332 388 PF03822.14 NAF Domain 1 54 54 82.1 2.4e-23 1 CL0573
Cotton_A_20574_CDS 50 202 50 202 PF00005.27 ABC_tran Domain 1 137 137 94.8 6e-27 1 CL0023
Cotton_A_20574_CDS 327 537 325 537 PF01061.24 ABC2_membrane Family 3 210 210 142.1 1.5e-41 1 CL0181
Cotton_A_04904_CDS 199 448 199 449 PF03000.14 NPH3 Family 1 256 258 276.4 2.5e-82 1 No_clan
Cotton_A_06220_CDS 1 61 1 64 PF04564.15 U-box Domain 14 70 73 33.8 2.7e-08 1 CL0229
Cotton_A_33786_CDS 30 117 30 122 PF12796.7 Ank_2 Repeat 1 76 83 54.1 1.8e-14 1 CL0465
Cotton_A_28636_CDS 130 230 130 243 PF14226.6 DIOX_N Family 1 98 118 68.4 8.9e-19 1 CL0029
Cotton_A_28636_CDS 285 379 283 381 PF03171.20 2OG-FeII_Oxy Domain 3 99 101 90.6 7.3e-26 1 CL0029
Cotton_A_21006_CDS 114 275 113 279 PF00270.29 DEAD Domain 2 171 176 140.7 4e-41 1 CL0023
Cotton_A_21006_CDS 315 423 314 423 PF00271.31 Helicase_C Family 2 111 111 97.8 4.6e-28 1 CL0023
Cotton_A_29425_CDS 4 122 4 140 PF02966.16 DIM1 Domain 1 117 133 139.9 3.9e-41 1 CL0172
Cotton_A_20060_CDS 34 86 33 86 PF08100.11 Dimerisation Domain 2 51 51 51.4 7.8e-14 1 CL0123
Cotton_A_20060_CDS 141 346 141 346 PF00891.18 Methyltransf_2 Domain 1 210 210 193.5 2.7e-57 1 CL0063
Cotton_A_13794_CDS 25 426 22 435 PF01490.18 Aa_trans Family 4 400 409 177.8 2.8e-52 1 CL0062
Cotton_A_11864_CDS 113 358 112 358 PF00109.26 ketoacyl-synt Domain 2 253 253 199.4 7.5e-59 1 CL0046
Cotton_A_11864_CDS 366 479 366 480 PF02801.22 Ketoacyl-synt_C Domain 1 117 118 117.2 3.8e-34 1 CL0046
Cotton_A_10579_CDS 21 82 19 84 PF13499.6 EF-hand_7 Domain 3 68 71 42.4 7e-11 1 CL0220
Cotton_A_10579_CDS 99 121 99 123 PF13202.6 EF-hand_5 Domain 1 23 25 27.0 2.1e-06 1 CL0220
Cotton_A_38672_CDS 39 185 38 186 PF03018.14 Dirigent Family 2 147 148 162.8 4.7e-48 1 CL0650
Cotton_A_32573_CDS 1 17 1 18 PF00642.24 zf-CCCH Family 10 26 27 27.9 1.6e-06 1 CL0537
Cotton_A_32573_CDS 130 155 129 155 PF00642.24 zf-CCCH Family 2 27 27 28.0 1.4e-06 1 CL0537
Cotton_A_32573_CDS 176 200 175 201 PF00642.24 zf-CCCH Family 2 26 27 37.6 1.4e-09 1 CL0537
Cotton_A_29302_CDS 1 50 1 50 PF01667.17 Ribosomal_S27e Family 6 55 55 84.0 4.2e-24 1 CL0167
Cotton_A_16382_CDS 26 76 26 77 PF05047.16 L51_S25_CI-B8 Domain 1 51 52 44.7 9e-12 1 CL0172
Cotton_A_15377_CDS 81 105 80 105 PF13912.6 zf-C2H2_6 Domain 2 26 27 46.9 1.8e-12 1 CL0361
Cotton_A_15377_CDS 144 167 143 169 PF13912.6 zf-C2H2_6 Domain 2 25 27 43.2 2.6e-11 1 CL0361
Cotton_A_01907_CDS 260 292 258 292 PF00010.26 HLH Domain 19 53 53 24.7 1.7e-05 1 No_clan
Cotton_A_20926_CDS 160 425 157 427 PF00069.25 Pkinase Domain 4 259 264 154.5 3.4e-45 1 CL0016
Cotton_A_31795_CDS 13 190 13 194 PF01975.17 SurE Family 1 190 195 120.4 7.8e-35 1 No_clan
Cotton_A_10831_CDS 75 384 75 384 PF03006.20 HlyIII Family 1 224 224 228.7 7.1e-68 1 CL0192
Cotton_A_35001_CDS 182 266 179 267 PF05172.13 Nup35_RRM Domain 4 100 101 86.4 1e-24 1 CL0221
Cotton_A_13317_CDS 16 276 3 285 PF12697.7 Abhydrolase_6 Domain 26 211 220 48.2 1.9e-12 1 CL0028
Cotton_A_38104_CDS 162 183 162 185 PF05553.11 DUF761 Family 1 22 36 27.9 1.2e-06 1 No_clan
Cotton_A_04475_CDS 80 486 74 506 PF00067.22 p450 Domain 26 440 463 296.4 3.4e-88 1 No_clan
Cotton_A_03492_CDS 34 118 33 118 PF13837.6 Myb_DNA-bind_4 Domain 3 90 90 69.8 1.9e-19 1 CL0123
Cotton_A_15920_CDS 16 59 14 59 PF08263.12 LRRNT_2 Family 3 41 41 32.0 1.2e-07 1 No_clan
Cotton_A_15920_CDS 101 114 100 114 PF13516.6 LRR_6 Repeat 4 17 24 12.9 0.086 1 CL0022
Cotton_A_15920_CDS 153 167 151 168 PF13516.6 LRR_6 Repeat 3 17 24 11.5 0.25 1 CL0022
Cotton_A_01993_CDS 98 966 98 968 PF05911.11 FPP Coiled-coil 1 865 867 919.0 3.1e-276 1 No_clan
Cotton_A_23418_CDS 172 205 171 207 PF02270.15 TFIIF_beta Domain 2 35 65 25.1 1.5e-05 1 CL0123
Cotton_A_09921_CDS 5 46 5 46 PF08263.12 LRRNT_2 Family 1 41 41 37.0 3.2e-09 1 No_clan
Cotton_A_09921_CDS 123 181 121 181 PF13855.6 LRR_8 Repeat 3 61 61 39.0 5e-10 1 CL0022
Cotton_A_09921_CDS 396 657 392 657 PF07714.17 Pkinase_Tyr Domain 5 259 259 126.5 1.1e-36 1 CL0016
Cotton_A_13109_CDS 62 131 62 132 PF00076.22 RRM_1 Domain 1 69 70 58.6 4.1e-16 1 CL0221
Cotton_A_16854_CDS 343 480 342 480 PF04146.15 YTH Domain 2 166 166 136.1 1.1e-39 1 CL0178
Cotton_A_16864_CDS 26 103 25 104 PF01282.19 Ribosomal_S24e Family 2 78 79 126.6 2.7e-37 1 No_clan
Cotton_A_21460_CDS 34 112 33 118 PF00027.29 cNMP_binding Domain 2 81 89 42.6 4.9e-11 1 CL0029
Cotton_A_21460_CDS 161 414 154 415 PF13622.6 4HBT_3 Domain 9 247 248 192.1 1.8e-56 1 CL0050
Cotton_A_12102_CDS 8 75 8 76 PF00076.22 RRM_1 Domain 1 69 70 59.8 1.7e-16 1 CL0221
Cotton_A_12102_CDS 108 166 108 177 PF00076.22 RRM_1 Domain 1 59 70 55.3 4.2e-15 1 CL0221
Cotton_A_08479_CDS 79 331 77 331 PF07714.17 Pkinase_Tyr Domain 3 259 259 228.5 8e-68 1 CL0016
Cotton_A_35937_CDS 77 133 57 135 PF00190.22 Cupin_1 Domain 40 95 151 66.6 1.8e-18 1 CL0029
Cotton_A_01602_CDS 100 351 100 356 PF12697.7 Abhydrolase_6 Domain 1 215 220 74.3 2.1e-20 1 CL0028
Cotton_A_35545_CDS 152 376 152 421 PF10225.9 NEMP Family 1 204 249 185.8 1.1e-54 1 No_clan
Cotton_A_28942_CDS 10 111 10 122 PF00071.22 Ras Domain 1 102 162 130.1 5.7e-38 1 CL0023
Cotton_A_39305_CDS 49 100 47 101 PF04770.12 ZF-HD_dimer Family 3 54 55 101.3 2.5e-29 1 No_clan
Cotton_A_23780_CDS 19 54 8 64 PF00125.24 Histone Domain 44 79 131 38.6 1.2e-09 1 CL0012
Cotton_A_23780_CDS 110 270 89 273 PF05004.13 IFRD Family 17 179 306 76.3 2.1e-21 1 CL0020
Cotton_A_31040_CDS 119 261 81 268 PF00201.18 UDPGT Family 278 419 499 25.1 7.1e-06 1 CL0113
Cotton_A_29796_CDS 81 145 81 145 PF00333.20 Ribosomal_S5 Domain 1 65 65 104.3 2.4e-30 1 CL0196
Cotton_A_29796_CDS 164 230 164 235 PF03719.15 Ribosomal_S5_C Domain 1 66 72 84.8 2e-24 1 CL0329
Cotton_A_04127_CDS 22 116 21 116 PF12776.7 Myb_DNA-bind_3 Domain 2 96 96 82.8 2.7e-23 1 CL0123
Cotton_A_27377_CDS 2 371 1 371 PF03140.15 DUF247 Family 27 397 397 302.7 4.5e-90 1 No_clan
Cotton_A_06026_CDS 201 312 201 324 PF03109.16 ABC1 Family 1 110 119 101.9 2.5e-29 1 CL0016
Cotton_A_30103_CDS 359 569 358 569 PF04042.16 DNA_pol_E_B Family 2 211 211 128.9 1.6e-37 1 CL0163
Cotton_A_31841_CDS 43 80 23 80 PF05691.12 Raffinose_syn Family 685 719 750 20.5 8.8e-05 1 CL0058
Cotton_A_02830_CDS 11 57 11 58 PF12937.7 F-box-like Domain 1 47 48 27.5 2.1e-06 1 CL0271
Cotton_A_02830_CDS 131 152 129 153 PF13516.6 LRR_6 Repeat 3 23 24 10.2 0.67 1 CL0022
Cotton_A_25593_CDS 1 78 1 78 PF00238.19 Ribosomal_L14 Domain 1 78 122 98.9 2e-28 1 No_clan
Cotton_A_21412_CDS 2 67 1 67 PF03876.17 SHS2_Rpb7-N Domain 5 70 70 60.1 2.1e-16 1 CL0319
Cotton_A_21412_CDS 68 143 68 147 PF00575.23 S1 Domain 1 70 75 44.4 1.6e-11 1 CL0021
Cotton_A_11275_CDS 44 99 43 101 PF02701.15 zf-Dof Family 2 57 59 110.1 4e-32 1 No_clan
Cotton_A_41027_CDS 44 187 25 187 PF00197.18 Kunitz_legume Domain 36 175 175 119.5 1.5e-34 1 CL0066
Cotton_A_08090_CDS 118 317 118 317 PF03145.16 Sina Family 1 200 200 264.8 5.5e-79 1 CL0389
Cotton_A_08044_CDS 65 318 65 327 PF00899.21 ThiF Domain 1 240 244 167.9 2.4e-49 1 CL0063
Cotton_A_02517_CDS 14 51 14 51 PF00249.31 Myb_DNA-binding Domain 1 46 46 33.0 4.9e-08 1 CL0123
Cotton_A_02517_CDS 58 100 57 102 PF00249.31 Myb_DNA-binding Domain 2 44 46 38.2 1.2e-09 1 CL0123
Cotton_A_22201_CDS 54 98 51 201 PF05142.12 DUF702 Family 4 48 150 27.7 3.2e-06 1 No_clan
Cotton_A_08850_CDS 113 140 111 141 PF01535.20 PPR Family 3 30 31 12.2 0.17 1 CL0020
Cotton_A_08850_CDS 145 192 145 192 PF13041.6 PPR_2 Repeat 3 50 50 52.9 3.1e-14 1 CL0020
Cotton_A_08850_CDS 213 262 213 262 PF13041.6 PPR_2 Repeat 1 50 50 53.1 2.7e-14 1 CL0020
Cotton_A_08850_CDS 287 316 285 316 PF12854.7 PPR_1 Repeat 5 34 34 36.3 3.2e-09 1 CL0020
Cotton_A_08850_CDS 326 371 322 371 PF13041.6 PPR_2 Repeat 5 50 50 44.2 1.6e-11 1 CL0020
Cotton_A_08850_CDS 392 439 392 441 PF13041.6 PPR_2 Repeat 1 48 50 62.0 4.4e-17 1 CL0020
Cotton_A_08850_CDS 459 490 458 491 PF12854.7 PPR_1 Repeat 2 33 34 38.1 8.9e-10 1 CL0020
Cotton_A_08850_CDS 518 548 516 549 PF12854.7 PPR_1 Repeat 3 33 34 46.7 1.9e-12 1 CL0020
Cotton_A_08850_CDS 555 599 555 601 PF13041.6 PPR_2 Repeat 1 45 50 43.9 2e-11 1 CL0020
Cotton_A_08850_CDS 625 674 625 674 PF13041.6 PPR_2 Repeat 1 50 50 51.5 8.5e-14 1 CL0020
Cotton_A_08850_CDS 734 761 732 762 PF01535.20 PPR Family 3 30 31 12.3 0.16 1 CL0020
Cotton_A_33366_CDS 19 147 5 148 PF00892.20 EamA Family 15 136 137 32.7 7e-08 1 CL0184
Cotton_A_33366_CDS 178 315 176 316 PF00892.20 EamA Family 3 136 137 31.8 1.3e-07 1 CL0184
Cotton_A_32422_CDS 32 84 29 91 PF00170.21 bZIP_1 Family 5 57 64 37.5 1.8e-09 1 CL0018
Cotton_A_16416_CDS 57 512 57 512 PF00759.19 Glyco_hydro_9 Domain 1 411 411 445.6 2.3e-133 1 CL0059
Cotton_A_10760_CDS 28 184 26 185 PF00112.23 Peptidase_C1 Domain 29 190 218 150.5 7e-44 1 CL0125
Cotton_A_07841_CDS 119 143 117 144 PF01535.20 PPR Family 6 30 31 15.3 0.018 1 CL0020
Cotton_A_07841_CDS 145 175 145 175 PF01535.20 PPR Family 1 31 31 26.7 4.1e-06 1 CL0020
Cotton_A_07841_CDS 218 243 216 244 PF01535.20 PPR Family 4 29 31 13.6 0.059 1 CL0020
Cotton_A_07841_CDS 246 276 246 276 PF01535.20 PPR Family 1 31 31 25.7 8.6e-06 1 CL0020
Cotton_A_07841_CDS 278 326 278 327 PF13041.6 PPR_2 Repeat 1 49 50 43.0 3.8e-11 1 CL0020
Cotton_A_07841_CDS 414 453 414 453 PF13041.6 PPR_2 Repeat 1 40 50 40.8 1.9e-10 1 CL0020
Cotton_A_07841_CDS 486 533 485 534 PF13041.6 PPR_2 Repeat 2 49 50 42.6 5.3e-11 1 CL0020
Cotton_A_07841_CDS 587 630 586 633 PF13041.6 PPR_2 Repeat 2 45 50 32.6 6.9e-08 1 CL0020
Cotton_A_07841_CDS 661 685 660 688 PF01535.20 PPR Family 2 26 31 21.3 0.00022 1 CL0020
Cotton_A_07841_CDS 825 954 825 954 PF01419.17 Jacalin Domain 1 133 133 100.0 9.3e-29 1 CL0568
Cotton_A_07841_CDS 1060 1190 1060 1191 PF01419.17 Jacalin Domain 1 132 133 95.3 2.6e-27 1 CL0568
Cotton_A_07841_CDS 1256 1387 1256 1388 PF01419.17 Jacalin Domain 1 132 133 110.9 4.1e-32 1 CL0568
Cotton_A_15762_CDS 102 301 102 301 PF03145.16 Sina Family 1 200 200 263.0 1.9e-78 1 CL0389
Cotton_A_36925_CDS 24 89 24 89 PF04431.13 Pec_lyase_N Family 1 56 56 64.0 1.1e-17 1 No_clan
Cotton_A_36925_CDS 185 369 176 369 PF00544.19 Pec_lyase_C Domain 29 211 211 78.0 7.2e-22 1 CL0268
Cotton_A_32478_CDS 34 159 33 159 PF02365.15 NAM Family 2 126 126 128.3 3e-37 1 No_clan
Cotton_A_38868_CDS 2 84 1 95 PF00421.19 PSII Family 375 457 507 100.8 7.4e-29 1 No_clan
Cotton_A_29289_CDS 54 444 54 445 PF03140.15 DUF247 Family 1 396 397 346.3 2.6e-103 1 No_clan
Cotton_A_12215_CDS 11 127 8 129 PF01873.17 eIF-5_eIF-2B Family 4 115 117 122.6 7.3e-36 1 CL0123
Cotton_A_12215_CDS 265 340 263 340 PF02020.18 W2 Family 5 79 79 70.3 1.1e-19 1 CL0020
Cotton_A_17439_CDS 20 81 20 84 PF01918.21 Alba Family 1 63 67 49.6 2.5e-13 1 CL0441
Cotton_A_13375_CDS 58 76 52 76 PF12874.7 zf-met Domain 7 25 25 19.1 0.0013 1 CL0361
Cotton_A_13375_CDS 95 118 94 118 PF12874.7 zf-met Domain 2 25 25 21.8 0.00018 1 CL0361
Cotton_A_40788_CDS 42 522 42 522 PF11744.8 ALMT Family 1 469 469 487.1 5.4e-146 1 CL0307
Cotton_A_04074_CDS 11 59 9 63 PF00191.20 Annexin Family 3 51 66 39.2 5.4e-10 1 No_clan
Cotton_A_23036_CDS 281 335 277 336 PF00536.30 SAM_1 Domain 5 60 64 50.6 2e-13 1 CL0003
Cotton_A_07416_CDS 127 302 126 311 PF02405.16 MlaE Family 2 177 212 192.8 5.6e-57 1 No_clan
Cotton_A_17887_CDS 27 158 26 158 PF06148.11 COG2 Family 2 133 133 127.7 3.1e-37 1 CL0295
Cotton_A_17887_CDS 617 745 616 745 PF12022.8 DUF3510 Family 2 126 126 119.3 1.3e-34 1 No_clan
Cotton_A_11503_CDS 37 77 36 78 PF03790.13 KNOX1 Family 2 42 43 62.2 2.6e-17 1 No_clan
Cotton_A_11503_CDS 94 142 92 142 PF03791.13 KNOX2 Family 4 48 48 57.9 5.3e-16 1 No_clan
Cotton_A_11503_CDS 200 221 200 221 PF03789.13 ELK Domain 1 22 22 29.3 6.5e-07 1 No_clan
Cotton_A_11503_CDS 240 279 240 279 PF05920.11 Homeobox_KN Family 1 40 40 64.4 6.2e-18 1 CL0123
Cotton_A_13278_CDS 9 50 2 59 PF13456.6 RVT_3 Domain 39 80 124 26.7 3.9e-06 1 CL0219
Cotton_A_34864_CDS 51 175 50 178 PF08240.12 ADH_N Domain 2 106 109 55.1 5.7e-15 1 CL0296
Cotton_A_18654_CDS 6 203 5 204 PF08442.10 ATP-grasp_2 Domain 2 201 202 57.5 1.3e-15 1 CL0179
Cotton_A_18654_CDS 241 417 241 418 PF16114.5 Citrate_bind Domain 1 177 178 270.0 6.9e-81 1 CL0506
Cotton_A_35554_CDS 2 83 1 84 PF17919.1 RT_RNaseH_2 Domain 17 99 100 58.6 5e-16 1 CL0219
Cotton_A_39189_CDS 10 57 2 57 PF05938.11 Self-incomp_S1 Family 60 104 104 22.1 0.00017 1 No_clan
Cotton_A_34708_CDS 152 277 149 279 PF01529.20 DHHC Family 5 132 134 138.4 1.5e-40 1 No_clan
Cotton_A_00217_CDS 128 241 126 243 PF07714.17 Pkinase_Tyr Domain 3 122 259 67.5 1.1e-18 1 CL0016
Cotton_A_00217_CDS 243 307 241 371 PF00069.25 Pkinase Domain 142 204 264 45.2 7.3e-12 1 CL0016
Cotton_A_35112_CDS 112 329 101 360 PF00933.21 Glyco_hydro_3 Domain 84 284 319 120.2 1.2e-34 1 CL0058
Cotton_A_35112_CDS 401 628 401 628 PF01915.22 Glyco_hydro_3_C Domain 1 204 204 178.5 1.5e-52 1 No_clan
Cotton_A_35112_CDS 693 760 692 762 PF14310.6 Fn3-like Family 2 69 71 42.8 4.1e-11 1 CL0159
Cotton_A_26536_CDS 31 139 30 139 PF13947.6 GUB_WAK_bind Domain 2 106 106 97.6 6.5e-28 1 No_clan
Cotton_A_26536_CDS 304 339 304 346 PF07645.15 EGF_CA Domain 1 35 42 36.0 5.9e-09 1 CL0001
Cotton_A_30070_CDS 451 608 450 609 PF13177.6 DNA_pol3_delta2 Domain 2 162 163 75.0 5.7e-21 1 CL0023
Cotton_A_30070_CDS 665 725 661 789 PF12169.8 DNA_pol3_gamma3 Family 5 65 143 25.2 1.2e-05 1 CL0604
Cotton_A_04227_CDS 31 168 28 168 PF00903.25 Glyoxalase Domain 4 128 128 63.5 2.1e-17 1 CL0104
Cotton_A_30233_CDS 38 84 34 85 PF00847.20 AP2 Domain 5 53 54 45.2 8.2e-12 1 CL0081
Cotton_A_30926_CDS 299 334 296 334 PF00400.32 WD40 Repeat 4 38 38 24.6 3.2e-05 1 CL0186
Cotton_A_30926_CDS 339 379 338 379 PF00400.32 WD40 Repeat 2 38 38 22.1 0.0002 1 CL0186
Cotton_A_30926_CDS 428 464 426 464 PF00400.32 WD40 Repeat 3 38 38 24.3 3.8e-05 1 CL0186
Cotton_A_18224_CDS 71 329 71 329 PF00069.25 Pkinase Domain 1 264 264 251.8 6.7e-75 1 CL0016
Cotton_A_18224_CDS 378 438 375 439 PF13499.6 EF-hand_7 Domain 4 70 71 40.2 3.4e-10 1 CL0220
Cotton_A_18224_CDS 448 510 447 510 PF13499.6 EF-hand_7 Domain 2 71 71 51.0 1.5e-13 1 CL0220
Cotton_A_05210_CDS 15 181 15 183 PF12819.7 Malectin_like Domain 1 173 336 191.6 1.9e-56 1 CL0202
Cotton_A_36055_CDS 72 266 70 300 PF01095.19 Pectinesterase Family 3 197 298 143.2 6.7e-42 1 CL0268
Cotton_A_18151_CDS 17 133 17 133 PF02136.20 NTF2 Domain 1 120 120 107.0 8.9e-31 1 CL0051
Cotton_A_03350_CDS 141 263 109 270 PF00881.24 Nitroreductase Domain 28 157 170 28.2 1.7e-06 1 CL0529
Cotton_A_13169_CDS 79 356 76 356 PF07714.17 Pkinase_Tyr Domain 4 259 259 168.0 2.3e-49 1 CL0016
Cotton_A_21259_CDS 73 336 73 336 PF16499.5 Melibiase_2 Family 1 284 284 280.4 1.4e-83 1 CL0058
Cotton_A_21259_CDS 352 427 351 428 PF17801.1 Melibiase_C Domain 2 70 71 69.1 2.4e-19 1 CL0369
Cotton_A_31292_CDS 147 235 146 236 PF13837.6 Myb_DNA-bind_4 Domain 3 89 90 80.7 7.7e-23 1 CL0123
Cotton_A_00875_CDS 210 241 209 242 PF12579.8 DUF3755 Family 2 33 34 60.3 9.8e-17 1 No_clan
Cotton_A_28161_CDS 20 174 7 179 PF03062.19 MBOAT Family 131 285 348 96.2 2.5e-27 1 CL0517
Cotton_A_28496_CDS 5 336 3 337 PF01536.16 SAM_decarbox Family 3 354 355 322.6 2.8e-96 1 No_clan
Cotton_A_17345_CDS 30 101 14 122 PF00651.31 BTB Domain 22 95 111 44.7 1.3e-11 1 CL0033
Cotton_A_02300_CDS 1 51 1 51 PF03134.19 TB2_DP1_HVA22 Family 27 77 77 51.1 9.3e-14 1 No_clan
Cotton_A_02583_CDS 55 79 54 82 PF14852.6 Fis1_TPR_N Domain 6 30 33 31.4 1.1e-07 1 CL0020
Cotton_A_02583_CDS 89 141 89 141 PF14853.6 Fis1_TPR_C Domain 1 53 53 81.0 4.8e-23 1 CL0020
Cotton_A_05938_CDS 162 545 160 545 PF01053.20 Cys_Met_Meta_PP Domain 3 382 382 457.1 3.2e-137 1 CL0061
Cotton_A_22409_CDS 75 136 75 136 PF00226.31 DnaJ Domain 1 63 63 75.2 3.3e-21 1 CL0392
Cotton_A_10258_CDS 20 153 18 153 PF04188.13 Mannosyl_trans2 Family 3 132 443 118.3 5.4e-34 1 CL0111
Cotton_A_10258_CDS 154 244 152 244 PF04188.13 Mannosyl_trans2 Family 164 254 443 52.6 4.5e-14 1 CL0111
Cotton_A_36464_CDS 26 145 16 146 PF04949.13 Transcrip_act Family 34 153 154 30.9 2.2e-07 1 No_clan
Cotton_A_26231_CDS 182 272 182 272 PF01190.17 Pollen_Ole_e_I Family 1 99 99 71.3 7e-20 1 CL0287
Cotton_A_02385_CDS 144 263 144 273 PF13589.6 HATPase_c_3 Domain 1 105 137 39.5 4.3e-10 1 CL0025
Cotton_A_27365_CDS 42 291 40 296 PF00067.22 p450 Domain 3 247 463 67.8 7.7e-19 1 No_clan
Cotton_A_35257_CDS 404 460 404 460 PF06886.11 TPX2 Family 1 57 57 76.3 1.5e-21 1 No_clan
Cotton_A_30768_CDS 14 94 8 96 PF14368.6 LTP_2 Family 5 92 97 37.5 1.8e-09 1 CL0482
Cotton_A_01027_CDS 19 88 19 89 PF12265.8 CAF1C_H4-bd Family 1 66 67 98.1 2.5e-28 1 No_clan
Cotton_A_01027_CDS 220 256 218 256 PF00400.32 WD40 Repeat 4 38 38 12.4 0.23 1 CL0186
Cotton_A_01027_CDS 264 302 263 302 PF00400.32 WD40 Repeat 2 38 38 31.4 2.3e-07 1 CL0186
Cotton_A_01027_CDS 367 402 364 403 PF00400.32 WD40 Repeat 4 37 38 19.0 0.0019 1 CL0186
Cotton_A_04281_CDS 170 231 170 238 PF00076.22 RRM_1 Domain 1 61 70 51.0 9.7e-14 1 CL0221
Cotton_A_05358_CDS 2 40 1 67 PF00012.20 HSP70 Family 330 368 599 19.9 0.00018 1 CL0108
Cotton_A_03247_CDS 125 303 124 304 PF01758.16 SBF Family 2 194 195 110.3 9.2e-32 1 CL0064
Cotton_A_18790_CDS 13 109 8 113 PF00153.27 Mito_carr Family 8 93 97 73.5 9.8e-21 1 No_clan
Cotton_A_22446_CDS 123 211 119 219 PF07714.17 Pkinase_Tyr Domain 5 95 259 35.3 7.4e-09 1 CL0016
Cotton_A_22446_CDS 220 397 219 397 PF00069.25 Pkinase Domain 122 264 264 103.3 1.3e-29 1 CL0016
Cotton_A_22446_CDS 416 460 416 460 PF00433.24 Pkinase_C Family 1 46 46 28.1 2.4e-06 1 No_clan
Cotton_A_25425_CDS 44 100 42 102 PF00403.26 HMA Domain 2 58 62 50.3 2.4e-13 1 No_clan
Cotton_A_25425_CDS 147 203 143 205 PF00403.26 HMA Domain 4 56 62 43.8 2.7e-11 1 No_clan
Cotton_A_05401_CDS 110 154 108 155 PF00249.31 Myb_DNA-binding Domain 3 45 46 42.1 7.3e-11 1 CL0123
Cotton_A_36170_CDS 63 159 52 161 PF00787.24 PX Domain 17 111 113 51.6 7.7e-14 1 No_clan
Cotton_A_28902_CDS 35 119 35 124 PF01190.17 Pollen_Ole_e_I Family 1 93 99 68.7 4.5e-19 1 CL0287
Cotton_A_20761_CDS 111 423 110 429 PF13898.6 DUF4205 Domain 3 282 347 202.6 7.9e-60 1 No_clan
Cotton_A_14651_CDS 62 173 62 186 PF00561.20 Abhydrolase_1 Domain 1 115 257 65.6 5.2e-18 1 CL0028
Cotton_A_34462_CDS 161 208 159 208 PF00010.26 HLH Domain 3 53 53 47.2 1.6e-12 1 No_clan
Cotton_A_22621_CDS 185 223 185 223 PF04810.15 zf-Sec23_Sec24 Domain 1 39 39 34.9 1.1e-08 1 No_clan
Cotton_A_22621_CDS 267 493 263 504 PF04811.15 Sec23_trunk Domain 7 227 243 56.6 2.7e-15 1 CL0128
Cotton_A_22621_CDS 511 602 509 603 PF08033.12 Sec23_BS Domain 3 95 96 45.5 9.8e-12 1 No_clan
Cotton_A_22621_CDS 616 712 614 713 PF04815.15 Sec23_helical Domain 3 102 103 44.6 9.8e-12 1 No_clan
Cotton_A_22621_CDS 969 1135 961 1138 PF00587.25 tRNA-synt_2b Domain 11 176 179 63.0 3.5e-17 1 CL0040
Cotton_A_22621_CDS 1154 1249 1154 1251 PF03129.20 HGTP_anticodon Domain 1 92 94 64.2 9.2e-18 1 CL0458
Cotton_A_22621_CDS 1277 1330 1277 1336 PF09180.11 ProRS-C_1 Domain 1 49 69 51.3 9.6e-14 1 No_clan
Cotton_A_34482_CDS 46 350 45 350 PF02535.22 Zip Family 2 333 333 230.3 3.5e-68 1 CL0184
Cotton_A_07410_CDS 77 269 76 269 PF13862.6 BCIP Family 2 206 206 197.4 2.2e-58 1 No_clan
Cotton_A_30324_CDS 5 109 3 115 PF10167.9 BORCS8 Family 3 106 112 101.6 2.3e-29 1 No_clan
Cotton_A_09642_CDS 201 336 198 338 PF10409.9 PTEN_C2 Family 4 133 135 93.8 7.1e-27 1 CL0154
Cotton_A_16658_CDS 233 278 233 278 PF10533.9 Plant_zn_clust Domain 1 49 49 56.9 1.5e-15 1 No_clan
Cotton_A_16658_CDS 282 338 281 339 PF03106.15 WRKY Domain 2 58 59 88.8 1.9e-25 1 CL0274
Cotton_A_07359_CDS 99 244 99 251 PF14299.6 PP2 Family 1 131 146 152.4 8.1e-45 1 No_clan
Cotton_A_07359_CDS 252 398 232 399 PF10536.9 PMD Domain 213 362 363 44.3 1.3e-11 1 No_clan
Cotton_A_12690_CDS 34 90 34 100 PF00076.22 RRM_1 Domain 1 56 70 64.4 6.1e-18 1 CL0221
Cotton_A_09724_CDS 60 545 59 546 PF00982.21 Glyco_transf_20 Family 2 473 474 619.2 4.3e-186 1 CL0113
Cotton_A_09724_CDS 595 828 595 830 PF02358.16 Trehalose_PPase Family 1 231 233 234.8 6.9e-70 1 CL0137
Cotton_A_27632_CDS 65 208 65 208 PF01565.23 FAD_binding_4 Domain 1 139 139 63.5 1.7e-17 1 CL0077
Cotton_A_27632_CDS 240 518 240 518 PF09265.10 Cytokin-bind Domain 1 281 281 397.7 2.7e-119 1 CL0277
Cotton_A_23132_CDS 81 509 81 516 PF00854.21 PTR2 Family 1 389 395 314.4 9.4e-94 1 CL0015
Cotton_A_14330_CDS 1 274 1 275 PF03140.15 DUF247 Family 92 396 397 209.5 9.5e-62 1 No_clan
Cotton_A_04304_CDS 31 70 30 70 PF08263.12 LRRNT_2 Family 2 41 41 40.3 2.8e-10 1 No_clan
Cotton_A_04304_CDS 271 328 271 330 PF13855.6 LRR_8 Repeat 1 59 61 28.3 1.1e-06 1 CL0022
Cotton_A_04304_CDS 626 710 623 728 PF07714.17 Pkinase_Tyr Domain 4 94 259 62.1 4.7e-17 1 CL0016
Cotton_A_04304_CDS 724 828 706 831 PF00069.25 Pkinase Domain 154 260 264 45.2 7.3e-12 1 CL0016
Cotton_A_05151_CDS 90 489 85 489 PF00450.22 Peptidase_S10 Domain 7 419 419 440.2 1.1e-131 1 CL0028
Cotton_A_33633_CDS 189 261 189 262 PF00076.22 RRM_1 Domain 1 69 70 44.9 7.4e-12 1 CL0221
Cotton_A_06916_CDS 236 335 203 338 PF10502.9 Peptidase_S26 Domain 25 133 138 42.3 6e-11 1 CL0299
Cotton_A_06819_CDS 27 66 26 66 PF08263.12 LRRNT_2 Family 2 41 41 38.4 1.1e-09 1 No_clan
Cotton_A_06819_CDS 135 157 135 157 PF00560.33 LRR_1 Repeat 1 23 23 10.8 0.65 1 CL0022
Cotton_A_06819_CDS 159 218 159 218 PF13855.6 LRR_8 Repeat 2 61 61 30.8 1.8e-07 1 CL0022
Cotton_A_02243_CDS 32 57 32 58 PF13912.6 zf-C2H2_6 Domain 1 26 27 43.8 1.7e-11 1 CL0361
Cotton_A_02243_CDS 78 102 77 103 PF13912.6 zf-C2H2_6 Domain 2 26 27 38.7 6.7e-10 1 CL0361
Cotton_A_15316_CDS 189 402 139 407 PF00282.19 Pyridoxal_deC Domain 147 368 375 82.6 2.3e-23 1 CL0061
Cotton_A_07371_CDS 9 75 9 75 PF00173.28 Cyt-b5 Domain 1 68 74 89.1 1.6e-25 1 No_clan
Cotton_A_04966_CDS 6 72 5 76 PF04564.15 U-box Domain 2 67 73 70.9 7.3e-20 1 CL0229
Cotton_A_37683_CDS 31 119 18 128 PF02769.22 AIRS_C Domain 54 146 156 54.2 1.7e-14 1 No_clan
Cotton_A_37683_CDS 196 267 196 270 PF13507.6 GATase_5 Domain 1 72 260 70.8 9.1e-20 1 CL0014
Cotton_A_08571_CDS 6 127 1 161 PF10173.9 Mit_KHE1 Family 27 91 190 35.2 1.3e-08 1 No_clan
Cotton_A_14666_CDS 6 111 5 114 PF06792.11 UPF0261 Family 2 91 404 47.3 1.4e-12 1 No_clan
Cotton_A_14666_CDS 114 162 111 165 PF06792.11 UPF0261 Family 126 174 404 43.4 2.1e-11 1 No_clan
Cotton_A_13622_CDS 134 184 133 185 PF00847.20 AP2 Domain 2 53 54 46.4 3.4e-12 1 CL0081
Cotton_A_13131_CDS 44 352 44 353 PF00067.22 p450 Domain 1 325 463 96.7 1.3e-27 1 No_clan
Cotton_A_22149_CDS 60 302 60 302 PF03087.14 DUF241 Family 1 234 234 245.1 8e-73 1 CL0133
Cotton_A_04753_CDS 30 156 29 156 PF14764.6 SPG48 Family 2 118 118 126.0 9.8e-37 1 No_clan
Cotton_A_25000_CDS 221 335 210 337 PF00917.26 MATH Domain 15 110 113 20.5 0.00041 1 CL0389
Cotton_A_32031_CDS 33 65 31 65 PF06376.12 AGP Family 1 36 36 67.3 7.2e-19 1 No_clan
Cotton_A_29864_CDS 6 53 1 53 PF07970.12 COPIIcoated_ERV Family 174 221 221 47.9 1.5e-12 1 No_clan
Cotton_A_36078_CDS 37 99 36 101 PF13499.6 EF-hand_7 Domain 2 68 71 37.1 3.2e-09 1 CL0220
Cotton_A_36078_CDS 108 171 108 172 PF13499.6 EF-hand_7 Domain 1 70 71 47.7 1.6e-12 1 CL0220
Cotton_A_27489_CDS 24 187 24 189 PF00071.22 Ras Domain 1 160 162 149.1 7.7e-44 1 CL0023
Cotton_A_16900_CDS 28 208 27 208 PF00722.21 Glyco_hydro_16 Domain 2 177 177 207.1 1.3e-61 1 CL0004
Cotton_A_16900_CDS 243 287 241 287 PF06955.12 XET_C Family 2 47 47 78.2 2.9e-22 1 CL0004
Cotton_A_22029_CDS 50 125 31 136 PF00164.25 Ribosom_S12_S23 Family 22 101 114 97.1 4.6e-28 1 CL0021
Cotton_A_18669_CDS 40 444 39 446 PF00860.20 Xan_ur_permease Family 2 387 389 217.5 2.4e-64 1 CL0062
Cotton_A_14010_CDS 10 79 9 80 PF00173.28 Cyt-b5 Domain 2 73 74 74.2 7e-21 1 No_clan
Cotton_A_14010_CDS 139 406 134 408 PF00487.24 FA_desaturase Domain 5 252 254 115.9 2.7e-33 1 No_clan
Cotton_A_02795_CDS 48 80 44 80 PF00400.32 WD40 Repeat 6 37 38 26.9 5.8e-06 1 CL0186
Cotton_A_16071_CDS 94 138 92 139 PF00249.31 Myb_DNA-binding Domain 3 45 46 40.3 2.7e-10 1 CL0123
Cotton_A_03951_CDS 89 132 88 132 PF13639.6 zf-RING_2 Domain 2 44 44 50.3 2.2e-13 1 CL0229
Cotton_A_22202_CDS 98 297 98 297 PF03145.16 Sina Family 1 200 200 266.1 2.2e-79 1 CL0389
Cotton_A_22566_CDS 40 280 40 280 PF00141.23 peroxidase Domain 1 229 229 270.4 1.3e-80 1 CL0617
Cotton_A_00615_CDS 13 95 5 96 PF02519.14 Auxin_inducible Family 2 89 90 78.8 2.6e-22 1 No_clan
Cotton_A_37239_CDS 7 109 5 109 PF03179.15 V-ATPase_G Family 3 105 105 103.1 1.1e-29 1 CL0255
Cotton_A_17502_CDS 248 391 241 392 PF13481.6 AAA_25 Domain 25 193 194 65.4 5.1e-18 1 CL0023
Cotton_A_03794_CDS 136 263 135 263 PF05542.11 DUF760 Family 2 84 84 75.1 4.3e-21 1 No_clan
Cotton_A_03794_CDS 320 392 316 395 PF05542.11 DUF760 Family 5 76 84 20.7 0.0004 1 No_clan
Cotton_A_14097_CDS 301 461 280 463 PF04851.15 ResIII Family 17 169 171 49.7 4e-13 1 CL0023
Cotton_A_14097_CDS 701 818 700 821 PF00271.31 Helicase_C Family 2 108 111 62.4 4.6e-17 1 CL0023
Cotton_A_14097_CDS 904 996 904 999 PF03368.14 Dicer_dimer Domain 1 88 92 69.4 2.2e-19 1 CL0196
Cotton_A_14097_CDS 1272 1334 1259 1345 PF02170.22 PAZ Domain 22 82 137 37.0 2.6e-09 1 CL0638
Cotton_A_14097_CDS 1723 1819 1716 1819 PF00636.26 Ribonuclease_3 Family 17 105 105 51.0 1.9e-13 1 CL0539
Cotton_A_14097_CDS 1932 2005 1931 2006 PF14709.7 DND1_DSRM Domain 2 79 80 51.4 9.5e-14 1 CL0196
Cotton_A_07079_CDS 88 175 88 176 PF10693.9 DUF2499 Family 1 88 89 131.8 7.8e-39 1 No_clan
Cotton_A_02733_CDS 57 100 57 102 PF00249.31 Myb_DNA-binding Domain 1 44 46 49.5 3.4e-13 1 CL0123
Cotton_A_31677_CDS 82 265 82 274 PF00875.18 DNA_photolyase Domain 1 158 164 130.0 8.4e-38 1 CL0039
Cotton_A_31677_CDS 378 537 375 559 PF03441.14 FAD_binding_7 Domain 3 164 202 163.6 4e-48 1 No_clan
Cotton_A_30714_CDS 123 183 123 183 PF13921.6 Myb_DNA-bind_6 Domain 1 60 60 59.8 2.3e-16 1 CL0123
Cotton_A_34002_CDS 34 70 32 71 PF08263.12 LRRNT_2 Family 4 40 41 32.3 8.9e-08 1 No_clan
Cotton_A_34002_CDS 124 183 123 184 PF13855.6 LRR_8 Repeat 2 60 61 48.0 7.5e-13 1 CL0022
Cotton_A_34002_CDS 197 219 197 219 PF00560.33 LRR_1 Repeat 1 23 23 9.9 1.2 1 CL0022
Cotton_A_03560_CDS 59 501 51 516 PF00067.22 p450 Domain 9 443 463 238.6 1.2e-70 1 No_clan
Cotton_A_00359_CDS 172 240 172 243 PF14360.6 PAP2_C Domain 1 71 74 78.6 3.7e-22 1 CL0525
Cotton_A_11901_CDS 2 71 1 76 PF02788.16 RuBisCO_large_N Domain 48 115 120 73.8 1.3e-20 1 No_clan
Cotton_A_11901_CDS 70 116 67 116 PF00016.20 RuBisCO_large Domain 6 52 299 68.0 7.4e-19 1 No_clan
Cotton_A_31484_CDS 23 54 23 59 PF02861.20 Clp_N Family 1 32 53 8.1 2.8 1 No_clan
Cotton_A_31484_CDS 136 169 135 171 PF02861.20 Clp_N Family 13 48 53 11.0 0.35 1 No_clan
Cotton_A_31484_CDS 730 861 725 892 PF07724.14 AAA_2 Domain 7 136 171 31.7 1.4e-07 1 CL0023
Cotton_A_16633_CDS 14 88 13 88 PF00575.23 S1 Domain 2 75 75 51.9 7e-14 1 CL0021
Cotton_A_16633_CDS 126 256 126 256 PF07541.12 EIF_2_alpha Family 1 116 116 136.7 3.4e-40 1 No_clan
Cotton_A_19367_CDS 4 269 4 321 PF03372.23 Exo_endo_phos Domain 1 206 233 62.8 3.3e-17 1 CL0530
Cotton_A_19367_CDS 562 612 562 613 PF06839.12 zf-GRF Domain 1 44 45 42.4 5.3e-11 1 CL0167
Cotton_A_29597_CDS 72 171 72 185 PF14226.6 DIOX_N Family 1 98 118 72.4 5e-20 1 CL0029
Cotton_A_29597_CDS 228 293 225 297 PF03171.20 2OG-FeII_Oxy Domain 5 70 101 53.4 2.8e-14 1 CL0029
Cotton_A_11856_CDS 176 423 170 469 PF02450.15 LCAT Family 17 238 392 151.8 2.9e-44 1 CL0028
Cotton_A_11856_CDS 481 661 448 663 PF02450.15 LCAT Family 233 390 392 69.7 2.5e-19 1 CL0028
Cotton_A_02137_CDS 20 70 17 105 PF03004.14 Transposase_24 Family 53 101 142 24.0 3.4e-05 1 No_clan
Cotton_A_34755_CDS 64 141 63 141 PF03330.18 DPBB_1 Domain 2 83 83 49.2 4.7e-13 1 CL0199
Cotton_A_34755_CDS 153 231 153 232 PF01357.21 Pollen_allerg_1 Domain 1 79 80 60.4 1.3e-16 1 CL0159
Cotton_A_03531_CDS 2 337 1 338 PF04724.13 Glyco_transf_17 Family 14 348 349 549.8 2.3e-165 1 No_clan
Cotton_A_35564_CDS 30 109 30 109 PF10273.9 WGG Family 1 80 80 77.3 1.1e-21 1 No_clan
Cotton_A_34984_CDS 33 101 31 103 PF01363.21 FYVE Domain 3 66 68 64.7 6.2e-18 1 CL0390
Cotton_A_34984_CDS 483 642 479 652 PF00118.24 Cpn60_TCP1 Family 236 373 491 58.9 3.6e-16 1 No_clan
Cotton_A_10252_CDS 64 300 64 318 PF02485.21 Branch Family 1 219 247 170.8 3.5e-50 1 CL0110
Cotton_A_24466_CDS 44 83 42 86 PF12937.7 F-box-like Domain 4 43 48 40.5 1.8e-10 1 CL0271
Cotton_A_19735_CDS 36 389 36 389 PF12819.7 Malectin_like Domain 1 336 336 126.9 9.5e-37 1 CL0202
Cotton_A_19735_CDS 499 759 495 764 PF07714.17 Pkinase_Tyr Domain 5 254 259 154.3 3.4e-45 1 CL0016
Cotton_A_15867_CDS 281 338 280 340 PF03478.18 DUF295 Domain 2 50 55 52.8 2.1e-14 1 No_clan
Cotton_A_24567_CDS 7 61 7 61 PF05641.12 Agenet Domain 1 61 61 30.9 2.7e-07 1 CL0049
Cotton_A_19154_CDS 1 424 1 426 PF06219.12 DUF1005 Family 1 435 437 592.8 4.5e-178 1 No_clan
Cotton_A_40387_CDS 186 237 186 237 PF00249.31 Myb_DNA-binding Domain 1 46 46 31.2 1.8e-07 1 CL0123
Cotton_A_00109_CDS 239 281 239 282 PF13639.6 zf-RING_2 Domain 1 43 44 45.3 8.1e-12 1 CL0229
Cotton_A_06006_CDS 32 83 19 84 PF03195.14 LOB Family 47 98 99 57.1 2e-15 1 No_clan
Cotton_A_28878_CDS 157 200 156 200 PF13639.6 zf-RING_2 Domain 2 44 44 47.4 1.8e-12 1 CL0229
Cotton_A_13057_CDS 7 267 1 267 PF00069.25 Pkinase Domain 37 264 264 170.2 5.3e-50 1 CL0016
Cotton_A_21696_CDS 484 538 484 539 PF00628.29 PHD Domain 1 51 52 42.7 3.8e-11 1 CL0390
Cotton_A_21696_CDS 849 892 842 894 PF00046.29 Homeodomain Domain 9 52 57 34.8 1.1e-08 1 CL0123
Cotton_A_17312_CDS 78 316 77 318 PF12697.7 Abhydrolase_6 Domain 1 218 220 91.0 1.6e-25 1 CL0028
Cotton_A_06424_CDS 109 294 96 327 PF00696.28 AA_kinase Family 20 190 241 36.3 4.5e-09 1 No_clan
Cotton_A_06424_CDS 480 546 450 558 PF00583.25 Acetyltransf_1 Family 33 101 117 39.6 5.2e-10 1 CL0257
Cotton_A_40101_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 47.8 1.2e-12 1 CL0123
Cotton_A_02631_CDS 64 137 62 137 PF00111.27 Fer2 Domain 3 78 78 66.5 1.5e-18 1 CL0486
Cotton_A_03762_CDS 188 272 188 272 PF01985.21 CRS1_YhbY Domain 1 84 84 53.9 1.5e-14 1 No_clan
Cotton_A_11779_CDS 132 171 129 171 PF13259.6 DUF4050 Family 144 183 183 55.2 1e-14 1 No_clan
Cotton_A_11989_CDS 88 170 88 183 PF00355.26 Rieske Domain 1 82 89 68.8 2.9e-19 1 CL0516
Cotton_A_11989_CDS 301 385 301 388 PF08417.12 PaO Family 1 85 88 96.7 6.6e-28 1 No_clan
Cotton_A_38174_CDS 1 145 1 145 PF01554.18 MatE Family 17 161 161 120.9 3.9e-35 1 CL0222
Cotton_A_38174_CDS 207 369 207 370 PF01554.18 MatE Family 1 160 161 125.2 1.8e-36 1 CL0222
Cotton_A_09764_CDS 47 154 45 155 PF00651.31 BTB Domain 3 110 111 45.9 5.6e-12 1 CL0033
Cotton_A_09764_CDS 240 324 238 324 PF02135.16 zf-TAZ Family 3 75 75 45.2 9.4e-12 1 No_clan
Cotton_A_19868_CDS 126 211 125 211 PF04719.14 TAFII28 Domain 2 86 86 108.7 1.2e-31 1 CL0012
Cotton_A_33247_CDS 279 349 278 350 PF04564.15 U-box Domain 2 72 73 64.3 8.3e-18 1 CL0229
Cotton_A_20477_CDS 81 195 81 195 PF01981.16 PTH2 Family 1 117 117 151.1 1.4e-44 1 CL0305
Cotton_A_32631_CDS 18 467 15 503 PF01602.20 Adaptin_N Family 5 449 524 289.5 4.4e-86 1 CL0020
Cotton_A_32631_CDS 669 807 669 808 PF07718.12 Coatamer_beta_C Domain 1 139 140 196.5 1.6e-58 1 CL0159
Cotton_A_32631_CDS 813 940 813 940 PF14806.6 Coatomer_b_Cpla Domain 1 128 128 193.5 1.1e-57 1 CL0545
Cotton_A_21337_CDS 2 117 1 119 PF00892.20 EamA Family 19 135 137 67.6 1.2e-18 1 CL0184
Cotton_A_21337_CDS 134 274 133 274 PF00892.20 EamA Family 2 137 137 92.3 2.9e-26 1 CL0184
Cotton_A_35147_CDS 7 240 1 266 PF00069.25 Pkinase Domain 22 221 264 105.7 2.6e-30 1 CL0016
Cotton_A_16284_CDS 39 304 38 304 PF13088.6 BNR_2 Domain 2 278 278 262.8 3.4e-78 1 CL0434
Cotton_A_05670_CDS 1 434 1 436 PF00862.19 Sucrose_synth Family 5 437 548 613.0 3.8e-184 1 CL0113
Cotton_A_05670_CDS 435 500 434 500 PF00862.19 Sucrose_synth Family 483 548 548 110.7 6e-32 1 CL0113
Cotton_A_05670_CDS 514 685 509 689 PF00534.20 Glycos_transf_1 Family 12 167 172 107.8 4.2e-31 1 CL0113
Cotton_A_27464_CDS 38 107 38 107 PF00505.19 HMG_box Domain 1 69 69 79.4 2e-22 1 CL0114
Cotton_A_36146_CDS 41 80 40 81 PF00415.18 RCC1 Repeat 7 44 50 24.6 2.9e-05 1 CL0186
Cotton_A_36146_CDS 82 130 81 130 PF00415.18 RCC1 Repeat 2 50 50 40.8 2.4e-10 1 CL0186
Cotton_A_36146_CDS 133 184 133 184 PF00415.18 RCC1 Repeat 1 50 50 45.9 6.5e-12 1 CL0186
Cotton_A_22922_CDS 120 338 119 338 PF03407.16 Nucleotid_trans Family 2 212 212 178.3 2e-52 1 CL0110
Cotton_A_34208_CDS 60 167 59 167 PF04430.14 DUF498 Domain 2 109 109 107.9 2.5e-31 1 No_clan
Cotton_A_40598_CDS 37 94 37 94 PF08246.12 Inhibitor_I29 Domain 1 58 58 63.5 1.8e-17 1 No_clan
Cotton_A_40598_CDS 103 316 100 316 PF00112.23 Peptidase_C1 Domain 5 218 218 257.2 1.6e-76 1 CL0125
Cotton_A_10583_CDS 9 52 8 54 PF12937.7 F-box-like Domain 2 46 48 31.1 1.6e-07 1 CL0271
Cotton_A_08746_CDS 7 114 4 115 PF12624.7 Chorein_N Family 7 115 116 111.1 3.2e-32 1 No_clan
Cotton_A_08746_CDS 138 383 138 384 PF16908.5 VPS13 Family 1 235 236 233.2 3.6e-69 1 No_clan
Cotton_A_37032_CDS 99 386 99 397 PF03552.14 Cellulose_synt Family 1 292 722 311.2 1.7e-92 1 CL0110
Cotton_A_37032_CDS 401 725 391 730 PF03552.14 Cellulose_synt Family 385 701 722 149.4 1.4e-43 1 CL0110
Cotton_A_38234_CDS 36 141 36 148 PF14226.6 DIOX_N Family 1 116 118 67.4 1.8e-18 1 CL0029
Cotton_A_38234_CDS 191 282 187 285 PF03171.20 2OG-FeII_Oxy Domain 6 98 101 81.6 4.5e-23 1 CL0029
Cotton_A_38046_CDS 5 154 5 156 PF00407.19 Bet_v_1 Domain 1 149 151 172.6 4.9e-51 1 CL0209
Cotton_A_32280_CDS 192 239 186 239 PF17830.1 STI1 Domain 7 55 55 38.6 7.5e-10 1 No_clan
Cotton_A_32280_CDS 285 339 285 339 PF13857.6 Ank_5 Repeat 1 56 56 48.4 7.4e-13 1 CL0465
Cotton_A_21244_CDS 1 54 1 54 PF00867.18 XPG_I Family 35 94 94 42.4 6.9e-11 1 CL0464
Cotton_A_17819_CDS 82 289 81 291 PF02536.14 mTERF Family 2 181 314 99.2 2.1e-28 1 No_clan
Cotton_A_17819_CDS 248 354 235 355 PF02536.14 mTERF Family 210 313 314 58.4 5.2e-16 1 No_clan
Cotton_A_34793_CDS 5 97 4 116 PF14226.6 DIOX_N Family 2 102 118 48.7 1.1e-12 1 CL0029
Cotton_A_34793_CDS 158 252 153 252 PF03171.20 2OG-FeII_Oxy Domain 6 101 101 97.0 7.3e-28 1 CL0029
Cotton_A_16038_CDS 177 200 177 201 PF00023.30 Ank Repeat 1 31 32 15.9 0.014 1 CL0465
Cotton_A_16038_CDS 269 385 265 393 PF13962.6 PGG Domain 5 105 116 51.2 9.7e-14 1 No_clan
Cotton_A_19331_CDS 3 42 1 47 PF00643.24 zf-B_box Domain 4 37 42 27.0 3.5e-06 1 No_clan
Cotton_A_19331_CDS 52 85 51 95 PF00643.24 zf-B_box Domain 2 35 42 28.4 1.3e-06 1 No_clan
Cotton_A_22845_CDS 32 117 32 143 PF14226.6 DIOX_N Family 1 81 118 48.0 1.9e-12 1 CL0029
Cotton_A_22845_CDS 187 281 182 282 PF03171.20 2OG-FeII_Oxy Domain 7 100 101 66.6 2.3e-18 1 CL0029
Cotton_A_15724_CDS 146 454 145 455 PF12697.7 Abhydrolase_6 Domain 2 219 220 78.9 8.3e-22 1 CL0028
Cotton_A_03224_CDS 23 97 21 98 PF14569.6 zf-UDP Domain 3 77 78 127.4 1.7e-37 1 CL0229
Cotton_A_03224_CDS 296 1033 296 1036 PF03552.14 Cellulose_synt Family 1 719 722 1363.7 0 1 CL0110
Cotton_A_22401_CDS 65 181 65 181 PF08446.11 PAS_2 Domain 1 107 107 127.9 2.4e-37 1 CL0183
Cotton_A_22401_CDS 214 398 214 398 PF01590.26 GAF Domain 1 133 133 119.5 1.5e-34 1 CL0161
Cotton_A_22401_CDS 411 584 409 588 PF00360.20 PHY Family 3 179 183 181.1 1.2e-53 1 CL0161
Cotton_A_22401_CDS 704 827 703 829 PF00989.25 PAS Domain 2 111 113 71.3 6.1e-20 1 CL0183
Cotton_A_22401_CDS 853 910 849 913 PF00512.25 HisKA Domain 5 64 67 30.9 2.1e-07 1 CL0025
Cotton_A_22401_CDS 961 1071 961 1073 PF02518.26 HATPase_c Domain 1 110 112 46.9 3.2e-12 1 CL0025
Cotton_A_33437_CDS 1 160 1 163 PF05193.21 Peptidase_M16_C Domain 20 178 183 43.3 4e-11 1 CL0094
Cotton_A_33437_CDS 169 452 169 453 PF16187.5 Peptidase_M16_M Family 1 278 279 312.6 2.2e-93 1 CL0094
Cotton_A_33437_CDS 458 644 457 644 PF05193.21 Peptidase_M16_C Domain 3 183 183 42.3 7.8e-11 1 CL0094
Cotton_A_01933_CDS 34 79 28 83 PF00571.28 CBS Domain 7 52 57 27.1 4.3e-06 1 No_clan
Cotton_A_01933_CDS 93 137 93 144 PF00571.28 CBS Domain 1 46 57 26.5 6.7e-06 1 No_clan
Cotton_A_01933_CDS 201 247 194 250 PF00571.28 CBS Domain 6 53 57 33.1 5.6e-08 1 No_clan
Cotton_A_01933_CDS 261 313 261 316 PF00571.28 CBS Domain 1 53 57 27.6 2.9e-06 1 No_clan
Cotton_A_01933_CDS 382 462 379 464 PF00564.24 PB1 Domain 4 82 84 48.5 6.3e-13 1 CL0072
Cotton_A_01744_CDS 274 330 274 330 PF06830.11 Root_cap Family 1 57 57 93.8 5e-27 1 No_clan
Cotton_A_11809_CDS 51 211 50 211 PF04862.12 DUF642 Domain 2 157 157 210.7 9.3e-63 1 CL0202
Cotton_A_11809_CDS 222 390 222 391 PF04862.12 DUF642 Domain 1 156 157 60.1 2e-16 1 CL0202
Cotton_A_17075_CDS 16 149 15 152 PF05903.14 Peptidase_C97 Domain 2 148 151 162.7 5.1e-48 1 CL0125
Cotton_A_01346_CDS 94 148 93 148 PF04483.12 DUF565 Family 3 60 60 68.2 6.6e-19 1 No_clan
Cotton_A_10516_CDS 19 207 18 211 PF05212.12 DUF707 Family 2 235 296 239.0 6.4e-71 1 No_clan
Cotton_A_26193_CDS 9 60 9 61 PF09713.10 A_thal_3526 Domain 1 52 53 90.1 7.6e-26 1 No_clan
Cotton_A_23864_CDS 479 613 477 614 PF09733.9 VEFS-Box Family 3 136 137 202.8 1.6e-60 1 No_clan
Cotton_A_16086_CDS 12 446 3 446 PF00171.22 Aldedh Family 27 462 462 271.9 8e-81 1 CL0099
Cotton_A_28639_CDS 36 122 33 123 PF13646.6 HEAT_2 Family 2 87 88 58.5 6.3e-16 1 CL0020
Cotton_A_28639_CDS 204 279 200 280 PF13646.6 HEAT_2 Family 13 87 88 43.2 4e-11 1 CL0020
Cotton_A_07063_CDS 131 357 129 365 PF04499.15 SAPS Family 3 240 489 134.7 4.2e-39 1 No_clan
Cotton_A_07063_CDS 357 491 355 491 PF04499.15 SAPS Family 355 489 489 80.6 1e-22 1 No_clan
Cotton_A_04813_CDS 254 311 253 311 PF03106.15 WRKY Domain 2 59 59 85.7 1.8e-24 1 CL0274
Cotton_A_18971_CDS 91 136 91 140 PF00097.25 zf-C3HC4 Domain 1 39 41 21.1 0.00021 1 CL0229
Cotton_A_18971_CDS 170 222 159 222 PF01485.21 IBR Domain 12 62 62 37.9 1.5e-09 1 CL0229
Cotton_A_18971_CDS 241 291 224 292 PF01485.21 IBR Domain 9 62 62 35.8 7e-09 1 CL0229
Cotton_A_29188_CDS 41 179 40 180 PF03018.14 Dirigent Family 2 147 148 127.6 3.2e-37 1 CL0650
Cotton_A_05795_CDS 81 264 81 265 PF14543.6 TAXi_N Domain 1 177 178 138.7 2.3e-40 1 CL0129
Cotton_A_05795_CDS 282 434 282 435 PF14541.6 TAXi_C Domain 1 160 161 62.6 3.6e-17 1 CL0129
Cotton_A_20659_CDS 24 144 18 144 PF04852.12 DUF640 Family 6 126 126 214.9 2.8e-64 1 No_clan
Cotton_A_23774_CDS 71 665 71 666 PF00012.20 HSP70 Family 1 598 599 871.2 3e-262 1 CL0108
Cotton_A_25882_CDS 90 227 89 231 PF00213.18 OSCP Family 3 140 172 81.7 6.6e-23 1 CL0255
Cotton_A_33149_CDS 3 96 1 97 PF00368.18 HMG-CoA_red Family 38 131 367 102.7 2.1e-29 1 No_clan
Cotton_A_33149_CDS 97 152 95 154 PF00368.18 HMG-CoA_red Family 160 215 367 58.1 7.6e-16 1 No_clan
Cotton_A_12541_CDS 2 43 2 43 PF12338.8 RbcS Family 1 45 45 77.9 4.7e-22 1 No_clan
Cotton_A_12541_CDS 68 176 68 176 PF00101.20 RuBisCO_small Domain 1 97 97 133.2 2.4e-39 1 No_clan
Cotton_A_28122_CDS 6 91 5 101 PF12796.7 Ank_2 Repeat 2 73 83 30.6 3.7e-07 1 CL0465
Cotton_A_28122_CDS 182 226 175 226 PF13857.6 Ank_5 Repeat 13 55 56 29.0 9.4e-07 1 CL0465
Cotton_A_19672_CDS 1 236 1 249 PF03140.15 DUF247 Family 8 244 397 169.8 1e-49 1 No_clan
Cotton_A_31091_CDS 155 204 155 205 PF00847.20 AP2 Domain 1 53 54 36.9 3.1e-09 1 CL0081
Cotton_A_31091_CDS 247 297 247 298 PF00847.20 AP2 Domain 1 53 54 37.7 1.7e-09 1 CL0081
Cotton_A_17064_CDS 38 514 38 514 PF03140.15 DUF247 Family 1 397 397 330.8 1.3e-98 1 No_clan
Cotton_A_12205_CDS 103 247 102 250 PF01569.21 PAP2 Family 2 132 136 110.1 6.6e-32 1 CL0525
Cotton_A_07181_CDS 98 275 98 275 PF01214.18 CK_II_beta Domain 1 182 182 265.4 2.5e-79 1 No_clan
Cotton_A_08674_CDS 30 78 28 79 PF00847.20 AP2 Domain 3 53 54 38.6 9e-10 1 CL0081
Cotton_A_02966_CDS 194 360 175 362 PF00544.19 Pec_lyase_C Domain 46 209 211 64.4 1e-17 1 CL0268
Cotton_A_18143_CDS 53 88 51 89 PF00400.32 WD40 Repeat 3 37 38 25.8 1.3e-05 1 CL0186
Cotton_A_18143_CDS 139 162 135 222 PF00400.32 WD40 Repeat 5 27 38 18.6 0.0024 1 CL0186
Cotton_A_18143_CDS 229 265 226 265 PF00400.32 WD40 Repeat 4 38 38 23.4 7.5e-05 1 CL0186
Cotton_A_18143_CDS 423 706 423 706 PF12341.8 Mcl1_mid Family 1 297 297 308.3 5.4e-92 1 CL0434
Cotton_A_27874_CDS 159 366 159 368 PF03360.16 Glyco_transf_43 Family 1 203 205 239.1 3.9e-71 1 CL0110
Cotton_A_03710_CDS 3 38 2 38 PF05627.11 AvrRpt-cleavage Domain 2 37 37 79.0 1.1e-22 1 No_clan
Cotton_A_30680_CDS 14 98 13 106 PF00011.21 HSP20 Family 2 92 102 44.1 1.7e-11 1 CL0190
Cotton_A_15648_CDS 18 63 18 64 PF00076.22 RRM_1 Domain 1 45 70 38.7 6.3e-10 1 CL0221
Cotton_A_12906_CDS 560 667 557 677 PF12043.8 DUF3527 Family 4 99 351 42.0 8.5e-11 1 CL0395
Cotton_A_12906_CDS 672 856 666 860 PF12043.8 DUF3527 Family 168 347 351 157.6 6.3e-46 1 CL0395
Cotton_A_05305_CDS 59 210 59 216 PF01652.18 IF4E Domain 1 153 159 180.7 1.7e-53 1 CL0625
Cotton_A_29722_CDS 40 200 40 200 PF01554.18 MatE Family 1 161 161 94.0 7.3e-27 1 CL0222
Cotton_A_29722_CDS 263 422 261 423 PF01554.18 MatE Family 4 160 161 87.0 1e-24 1 CL0222
Cotton_A_12946_CDS 71 142 45 144 PF12796.7 Ank_2 Repeat 24 81 83 32.8 8.1e-08 1 CL0465
Cotton_A_12946_CDS 278 298 278 299 PF18044.1 zf-CCCH_4 Domain 1 21 22 30.7 1.9e-07 1 CL0537
Cotton_A_03351_CDS 20 120 20 120 PF12776.7 Myb_DNA-bind_3 Domain 1 96 96 32.1 1.7e-07 1 CL0123
Cotton_A_38049_CDS 19 264 17 264 PF01182.20 Glucosamine_iso Domain 3 225 225 233.3 3e-69 1 CL0246
Cotton_A_16348_CDS 57 180 57 180 PF10392.9 COG5 Family 1 132 132 98.5 3.3e-28 1 CL0295
Cotton_A_20214_CDS 26 196 25 197 PF05042.13 Caleosin Family 2 169 170 232.5 2.5e-69 1 CL0220
Cotton_A_39436_CDS 107 142 101 143 PF00468.17 Ribosomal_L34 Family 11 43 44 42.7 3.9e-11 1 No_clan
Cotton_A_21280_CDS 10 94 1 96 PF00125.24 Histone Domain 44 129 131 56.6 3.3e-15 1 CL0012
Cotton_A_21280_CDS 97 130 97 131 PF16211.5 Histone_H2A_C Family 1 34 35 65.4 2.7e-18 1 No_clan
Cotton_A_23215_CDS 158 215 158 215 PF03106.15 WRKY Domain 1 59 59 90.8 4.8e-26 1 CL0274
Cotton_A_01937_CDS 75 122 75 122 PF00319.18 SRF-TF Domain 1 48 48 89.0 9.7e-26 1 No_clan
Cotton_A_01937_CDS 124 176 121 185 PF01486.17 K-box Family 28 80 93 40.3 2.6e-10 1 No_clan
Cotton_A_07483_CDS 61 97 60 106 PF03143.17 GTP_EFTU_D3 Domain 2 40 112 16.2 0.0096 1 No_clan
Cotton_A_07483_CDS 114 139 104 139 PF03143.17 GTP_EFTU_D3 Domain 86 111 112 24.1 3.3e-05 1 No_clan
Cotton_A_39039_CDS 165 213 164 214 PF00415.18 RCC1 Repeat 2 49 50 43.3 4.2e-11 1 CL0186
Cotton_A_39039_CDS 329 378 329 378 PF00415.18 RCC1 Repeat 3 50 50 24.1 4.1e-05 1 CL0186
Cotton_A_39039_CDS 381 430 381 430 PF00415.18 RCC1 Repeat 1 50 50 53.7 2.3e-14 1 CL0186
Cotton_A_39039_CDS 433 483 433 488 PF00415.18 RCC1 Repeat 1 41 50 27.2 4.3e-06 1 CL0186
Cotton_A_29092_CDS 41 425 39 429 PF00999.21 Na_H_Exchanger Family 2 378 381 218.8 9.4e-65 1 CL0064
Cotton_A_10233_CDS 89 113 89 113 PF06943.12 zf-LSD1 Domain 1 25 25 39.7 3.1e-10 1 No_clan
Cotton_A_10233_CDS 128 151 128 152 PF06943.12 zf-LSD1 Domain 1 24 25 39.2 4.5e-10 1 No_clan
Cotton_A_22781_CDS 35 187 35 188 PF00112.23 Peptidase_C1 Domain 1 154 218 173.6 5.8e-51 1 CL0125
Cotton_A_11387_CDS 165 253 165 260 PF13640.6 2OG-FeII_Oxy_3 Domain 1 74 96 52.4 7.7e-14 1 CL0029
Cotton_A_11521_CDS 21 335 21 337 PF00332.18 Glyco_hydro_17 Domain 1 311 313 265.0 1.1e-78 1 CL0058
Cotton_A_11521_CDS 358 428 357 429 PF07983.13 X8 Domain 2 75 76 71.5 7e-20 1 No_clan
Cotton_A_07007_CDS 538 660 537 660 PF04153.18 NOT2_3_5 Family 2 131 131 112.3 1.6e-32 1 No_clan
Cotton_A_29776_CDS 27 99 5 103 PF02519.14 Auxin_inducible Family 17 85 90 32.4 7.9e-08 1 No_clan
Cotton_A_34544_CDS 26 379 8 393 PF00067.22 p450 Domain 86 446 463 195.0 1.9e-57 1 No_clan
Cotton_A_31857_CDS 38 84 37 84 PF13639.6 zf-RING_2 Domain 2 44 44 34.3 2.2e-08 1 CL0229
Cotton_A_19638_CDS 9 107 4 119 PF05340.12 DUF740 Family 5 130 609 61.4 7.2e-17 1 No_clan
Cotton_A_37970_CDS 1 108 1 108 PF04997.12 RNA_pol_Rpb1_1 Domain 206 312 312 104.5 6.8e-30 1 No_clan
Cotton_A_08257_CDS 219 355 210 369 PF03372.23 Exo_endo_phos Domain 13 155 233 31.2 1.5e-07 1 CL0530
Cotton_A_28751_CDS 253 338 249 339 PF02517.16 CPBP Family 5 91 92 73.6 1.2e-20 1 CL0472
Cotton_A_04320_CDS 320 419 320 421 PF02362.21 B3 Family 1 99 101 58.5 4.6e-16 1 CL0405
Cotton_A_04320_CDS 599 641 599 642 PF07496.15 zf-CW Domain 1 47 48 43.2 2.9e-11 1 No_clan
Cotton_A_29440_CDS 96 404 96 405 PF03399.16 SAC3_GANP Family 1 292 293 270.9 1.3e-80 1 CL0123
Cotton_A_15658_CDS 37 146 37 151 PF14226.6 DIOX_N Family 1 117 118 97.5 8.5e-28 1 CL0029
Cotton_A_15658_CDS 197 278 195 285 PF03171.20 2OG-FeII_Oxy Domain 3 84 101 83.7 1.1e-23 1 CL0029
Cotton_A_23947_CDS 35 75 33 75 PF01476.20 LysM Domain 7 44 44 29.1 7.7e-07 1 CL0187
Cotton_A_23947_CDS 95 135 95 136 PF01476.20 LysM Domain 1 42 44 28.4 1.2e-06 1 CL0187
Cotton_A_20986_CDS 23 177 23 179 PF02453.17 Reticulon Family 1 155 157 163.9 2.6e-48 1 CL0484
Cotton_A_20376_CDS 184 242 182 242 PF13855.6 LRR_8 Repeat 3 61 61 28.1 1.2e-06 1 CL0022
Cotton_A_20376_CDS 252 269 252 270 PF13516.6 LRR_6 Repeat 1 18 24 10.5 0.54 1 CL0022
Cotton_A_20376_CDS 304 318 301 319 PF13516.6 LRR_6 Repeat 4 18 24 10.0 0.75 1 CL0022
Cotton_A_17674_CDS 422 443 420 443 PF01535.20 PPR Family 10 31 31 11.1 0.39 1 CL0020
Cotton_A_17674_CDS 484 512 483 513 PF01535.20 PPR Family 2 30 31 18.6 0.0015 1 CL0020
Cotton_A_17674_CDS 515 544 514 544 PF01535.20 PPR Family 2 31 31 22.6 8e-05 1 CL0020
Cotton_A_10177_CDS 9 71 8 72 PF01423.22 LSM Domain 2 66 67 76.2 1.1e-21 1 CL0527
Cotton_A_37691_CDS 29 164 29 166 PF09229.11 Aha1_N Domain 1 134 137 116.2 1.2e-33 1 CL0648
Cotton_A_37691_CDS 230 350 227 351 PF08327.11 AHSA1 Family 4 124 125 47.1 2.5e-12 1 CL0209
Cotton_A_38531_CDS 12 59 12 59 PF00249.31 Myb_DNA-binding Domain 1 46 46 60.6 1.2e-16 1 CL0123
Cotton_A_40746_CDS 3 44 1 60 PF17917.1 RT_RNaseH Domain 29 70 105 48.3 9.5e-13 1 CL0219
Cotton_A_33295_CDS 66 127 66 127 PF00226.31 DnaJ Domain 1 63 63 74.4 5.5e-21 1 CL0392
Cotton_A_33295_CDS 517 724 515 724 PF11926.8 DUF3444 Family 3 212 212 262.5 2.7e-78 1 No_clan
Cotton_A_18145_CDS 411 452 409 452 PF13639.6 zf-RING_2 Domain 3 44 44 41.7 1.1e-10 1 CL0229
Cotton_A_31956_CDS 33 68 32 69 PF08263.12 LRRNT_2 Family 2 40 41 29.6 6.1e-07 1 No_clan
Cotton_A_31956_CDS 216 238 216 238 PF00560.33 LRR_1 Repeat 1 23 23 9.3 2 1 CL0022
Cotton_A_31956_CDS 537 596 536 596 PF13855.6 LRR_8 Repeat 2 61 61 33.1 3.5e-08 1 CL0022
Cotton_A_31956_CDS 705 962 704 997 PF00069.25 Pkinase Domain 2 240 264 143.5 7.5e-42 1 CL0016
Cotton_A_35202_CDS 45 97 44 97 PF05605.12 zf-Di19 Domain 2 54 54 69.2 2.7e-19 1 CL0361
Cotton_A_35202_CDS 122 233 122 233 PF14571.6 Di19_C Family 1 102 102 107.4 4.4e-31 1 No_clan
Cotton_A_00528_CDS 419 493 357 493 PF14309.6 DUF4378 Family 93 165 165 28.1 2.3e-06 1 No_clan
Cotton_A_34272_CDS 135 418 65 420 PF03016.15 Exostosin Family 3 298 300 195.0 1.7e-57 1 No_clan
Cotton_A_07517_CDS 213 259 213 259 PF00097.25 zf-C3HC4 Domain 1 41 41 26.9 3.1e-06 1 CL0229
Cotton_A_21808_CDS 16 80 9 89 PF00407.19 Bet_v_1 Domain 26 91 151 45.0 9.8e-12 1 CL0209
Cotton_A_22808_CDS 62 563 60 564 PF00982.21 Glyco_transf_20 Family 3 473 474 589.2 5.5e-177 1 CL0113
Cotton_A_22808_CDS 613 846 613 848 PF02358.16 Trehalose_PPase Family 1 231 233 253.2 1.6e-75 1 CL0137
Cotton_A_20821_CDS 5 72 3 74 PF00240.23 ubiquitin Domain 3 70 72 60.9 7.2e-17 1 CL0072
Cotton_A_20821_CDS 195 259 188 261 PF00240.23 ubiquitin Domain 7 66 72 21.8 0.00012 1 CL0072
Cotton_A_09299_CDS 31 151 23 151 PF04852.12 DUF640 Family 7 126 126 219.0 1.5e-65 1 No_clan
Cotton_A_21790_CDS 164 270 164 271 PF03859.16 CG-1 Domain 1 115 116 129.2 6.2e-38 1 No_clan
Cotton_A_21790_CDS 664 751 660 753 PF12796.7 Ank_2 Repeat 4 81 83 34.7 2e-08 1 CL0465
Cotton_A_21790_CDS 911 930 910 930 PF00612.27 IQ Motif 2 21 21 19.0 0.0008 1 CL0220
Cotton_A_01261_CDS 26 134 26 137 PF00072.24 Response_reg Domain 1 109 112 88.4 3.4e-25 1 CL0304
Cotton_A_01261_CDS 207 257 207 257 PF00249.31 Myb_DNA-binding Domain 1 46 46 30.7 2.6e-07 1 CL0123
Cotton_A_04739_CDS 30 71 28 72 PF00249.31 Myb_DNA-binding Domain 3 44 46 36.1 5.5e-09 1 CL0123
Cotton_A_03435_CDS 114 167 113 167 PF14416.6 PMR5N Domain 2 53 53 70.8 8.4e-20 1 No_clan
Cotton_A_03435_CDS 170 369 168 376 PF13839.6 PC-Esterase Family 3 204 283 180.4 6e-53 1 CL0264
Cotton_A_37176_CDS 39 430 33 433 PF00202.21 Aminotran_3 Domain 11 403 406 312.0 4.8e-93 1 CL0061
Cotton_A_16467_CDS 269 384 252 412 PF01564.17 Spermine_synth Domain 27 132 188 32.1 6.9e-08 1 CL0063
Cotton_A_30810_CDS 95 162 92 173 PF16561.5 AMPK1_CBM Family 5 68 85 56.8 2e-15 1 CL0369
Cotton_A_05351_CDS 84 123 84 124 PF13414.6 TPR_11 Repeat 1 40 42 29.4 4.7e-07 1 CL0020
Cotton_A_05351_CDS 187 692 186 693 PF12569.8 NARP1 Family 2 514 515 646.9 2.6e-194 1 CL0020
Cotton_A_20249_CDS 71 331 71 331 PF00685.27 Sulfotransfer_1 Domain 1 267 267 223.6 3.2e-66 1 CL0023
Cotton_A_08221_CDS 33 116 33 116 PF02298.17 Cu_bind_like Domain 1 84 84 102.0 1.3e-29 1 CL0026
Cotton_A_09559_CDS 13 87 12 88 PF06404.12 PSK Family 1 89 90 68.4 8.5e-19 1 No_clan
Cotton_A_28422_CDS 55 344 52 344 PF03151.16 TPT Family 4 290 290 150.0 8.7e-44 1 CL0184
Cotton_A_14209_CDS 99 160 4 161 PF14510.6 ABC_trans_N Domain 30 80 81 45.1 1.1e-11 1 No_clan
Cotton_A_14209_CDS 186 350 186 352 PF00005.27 ABC_tran Domain 1 135 137 51.1 1.8e-13 1 CL0023
Cotton_A_14209_CDS 504 715 503 716 PF01061.24 ABC2_membrane Family 2 209 210 150.0 5.9e-44 1 CL0181
Cotton_A_14209_CDS 721 785 721 785 PF08370.11 PDR_assoc Family 1 65 65 94.0 3.2e-27 1 No_clan
Cotton_A_14209_CDS 871 1022 870 1022 PF00005.27 ABC_tran Domain 2 137 137 70.3 2.2e-19 1 CL0023
Cotton_A_14209_CDS 1168 1381 1167 1381 PF01061.24 ABC2_membrane Family 2 210 210 195.3 7.9e-58 1 CL0181
Cotton_A_07140_CDS 1710 1769 1710 1774 PF05641.12 Agenet Domain 1 57 61 36.9 3.6e-09 1 CL0049
Cotton_A_19677_CDS 82 136 75 139 PF00076.22 RRM_1 Domain 15 66 70 28.8 8e-07 1 CL0221
Cotton_A_19677_CDS 406 606 406 606 PF08662.11 eIF2A Family 1 194 194 217.7 1.3e-64 1 CL0186
Cotton_A_27297_CDS 101 192 101 193 PF03501.15 S10_plectin Domain 1 92 93 142.6 3e-42 1 CL0123
Cotton_A_04041_CDS 159 415 159 415 PF00069.25 Pkinase Domain 1 264 264 251.9 6.6e-75 1 CL0016
Cotton_A_04041_CDS 438 474 436 474 PF00433.24 Pkinase_C Family 3 46 46 20.0 0.00084 1 No_clan
Cotton_A_16770_CDS 11 212 11 215 PF04654.12 DUF599 Family 1 207 210 206.5 3e-61 1 No_clan
Cotton_A_10507_CDS 68 531 68 540 PF00118.24 Cpn60_TCP1 Family 1 451 491 266.9 3.1e-79 1 No_clan
Cotton_A_07316_CDS 81 262 81 262 PF14215.6 bHLH-MYC_N Family 1 175 175 186.2 6.2e-55 1 CL0161
Cotton_A_07316_CDS 482 527 480 528 PF00010.26 HLH Domain 4 52 53 41.4 1e-10 1 No_clan
Cotton_A_07921_CDS 16 105 16 105 PF00447.17 HSF_DNA-bind Domain 1 96 96 106.4 8.7e-31 1 CL0123
Cotton_A_05526_CDS 351 399 349 399 PF00249.31 Myb_DNA-binding Domain 3 46 46 34.9 1.3e-08 1 CL0123
Cotton_A_40824_CDS 77 128 75 137 PF03004.14 Transposase_24 Family 3 56 142 26.7 4.9e-06 1 No_clan
Cotton_A_03305_CDS 24 223 21 224 PF13398.6 Peptidase_M50B Family 4 199 200 198.3 1.1e-58 1 CL0126
Cotton_A_00116_CDS 36 324 36 327 PF00850.19 Hist_deacetyl Domain 1 304 307 277.4 1.7e-82 1 CL0302
Cotton_A_08530_CDS 14 95 14 96 PF07011.11 Elf4 Domain 1 82 83 133.2 2.2e-39 1 No_clan
Cotton_A_04360_CDS 41 104 39 104 PF02135.16 zf-TAZ Family 3 57 75 31.8 1.5e-07 1 No_clan
Cotton_A_19090_CDS 3 71 1 72 PF10409.9 PTEN_C2 Family 62 134 135 66.6 1.8e-18 1 CL0154
Cotton_A_19090_CDS 745 799 735 802 PF02181.23 FH2 Family 96 150 372 41.7 7.6e-11 1 No_clan
Cotton_A_18306_CDS 271 398 257 433 PF00201.18 UDPGT Family 274 384 499 65.9 3e-18 1 CL0113
Cotton_A_26831_CDS 71 139 71 139 PF00076.22 RRM_1 Domain 1 70 70 61.0 7.1e-17 1 CL0221
Cotton_A_39234_CDS 2 189 1 189 PF01201.22 Ribosomal_S8e Family 9 137 137 172.3 5.4e-51 1 No_clan
Cotton_A_15567_CDS 130 463 129 463 PF03104.19 DNA_pol_B_exo1 Family 2 337 337 273.4 2.6e-81 1 CL0219
Cotton_A_15567_CDS 555 602 555 606 PF00136.21 DNA_pol_B Family 1 49 459 22.5 4.2e-05 1 CL0194
Cotton_A_15567_CDS 615 952 603 952 PF00136.21 DNA_pol_B Family 101 459 459 392.8 1.9e-117 1 CL0194
Cotton_A_15567_CDS 989 1060 989 1060 PF14260.6 zf-C4pol Domain 1 70 70 63.2 2.4e-17 1 No_clan
Cotton_A_08173_CDS 228 270 228 271 PF06203.14 CCT Motif 1 43 44 66.4 1.7e-18 1 CL0281
Cotton_A_04952_CDS 139 355 139 395 PF03372.23 Exo_endo_phos Domain 1 208 233 58.3 7.6e-16 1 CL0530
Cotton_A_07408_CDS 55 145 53 145 PF00254.28 FKBP_C Domain 3 94 94 119.5 5.7e-35 1 CL0487
Cotton_A_07408_CDS 172 262 169 262 PF00254.28 FKBP_C Domain 4 94 94 61.3 8.4e-17 1 CL0487
Cotton_A_07408_CDS 287 380 286 381 PF00254.28 FKBP_C Domain 2 93 94 78.1 4.8e-22 1 CL0487
Cotton_A_07408_CDS 484 517 484 517 PF00515.28 TPR_1 Repeat 1 34 34 31.2 1.2e-07 1 CL0020
Cotton_A_19693_CDS 26 66 24 66 PF08263.12 LRRNT_2 Family 3 41 41 31.0 2.3e-07 1 No_clan
Cotton_A_19693_CDS 236 258 236 258 PF00560.33 LRR_1 Repeat 1 23 23 9.3 1.9 1 CL0022
Cotton_A_19693_CDS 691 949 682 949 PF07714.17 Pkinase_Tyr Domain 13 259 259 144.1 4.7e-42 1 CL0016
Cotton_A_32354_CDS 272 343 272 344 PF04564.15 U-box Domain 1 72 73 74.8 4.6e-21 1 CL0229
Cotton_A_32354_CDS 403 445 402 446 PF00514.23 Arm Repeat 2 40 41 22.6 7.5e-05 1 CL0020
Cotton_A_36787_CDS 188 343 185 345 PF09728.9 Taxilin Coiled-coil 63 229 308 112.2 2.7e-32 1 No_clan
Cotton_A_36787_CDS 411 491 409 491 PF09728.9 Taxilin Coiled-coil 228 308 308 81.5 5.8e-23 1 No_clan
Cotton_A_40489_CDS 37 211 32 212 PF04525.12 LOR Domain 13 186 187 172.7 5.9e-51 1 CL0395
Cotton_A_29586_CDS 57 129 56 130 PF01929.17 Ribosomal_L14e Family 2 74 75 96.3 1.1e-27 1 CL0107
Cotton_A_34108_CDS 43 755 18 755 PF03030.16 H_PPase Family 21 650 650 837.7 7.2e-252 1 No_clan
Cotton_A_17083_CDS 27 279 25 279 PF00069.25 Pkinase Domain 3 264 264 250.8 1.4e-74 1 CL0016
Cotton_A_17083_CDS 317 373 317 374 PF03822.14 NAF Domain 1 52 54 62.0 4.3e-17 1 CL0573
Cotton_A_20877_CDS 177 376 172 377 PF00122.20 E1-E2_ATPase Family 6 179 181 40.4 2.1e-10 1 No_clan
Cotton_A_20877_CDS 588 766 587 766 PF00689.21 Cation_ATPase_C Family 2 182 182 73.4 1.9e-20 1 No_clan
Cotton_A_26957_CDS 33 90 32 91 PF13855.6 LRR_8 Repeat 2 60 61 36.0 4.2e-09 1 CL0022
Cotton_A_24871_CDS 39 169 38 175 PF04043.15 PMEI Domain 2 148 154 53.6 3.1e-14 1 No_clan
Cotton_A_27132_CDS 26 287 4 300 PF05004.13 IFRD Family 29 292 306 147.7 4e-43 1 CL0020
Cotton_A_33116_CDS 158 228 158 229 PF07983.13 X8 Domain 1 75 76 76.5 1.9e-21 1 No_clan
Cotton_A_14346_CDS 69 225 69 242 PF03140.15 DUF247 Family 1 166 397 108.2 5.2e-31 1 No_clan
Cotton_A_03440_CDS 9 45 9 45 PF08071.12 RS4NT Domain 1 37 37 68.2 4.9e-19 1 No_clan
Cotton_A_03440_CDS 53 96 48 96 PF01479.25 S4 Domain 6 48 48 27.9 1.4e-06 1 CL0492
Cotton_A_03440_CDS 101 175 101 175 PF00900.20 Ribosomal_S4e Family 1 75 75 118.7 7.7e-35 1 CL0021
Cotton_A_03440_CDS 183 216 183 217 PF00467.29 KOW Family 1 31 32 27.1 2.8e-06 1 CL0107
Cotton_A_03440_CDS 218 264 218 265 PF16121.5 40S_S4_C Family 1 47 48 91.8 1.5e-26 1 No_clan
Cotton_A_07013_CDS 41 151 37 153 PF07732.15 Cu-oxidase_3 Domain 5 117 119 138.0 1.4e-40 1 CL0026
Cotton_A_07013_CDS 164 314 163 316 PF00394.22 Cu-oxidase Domain 2 157 159 142.7 1e-41 1 CL0026
Cotton_A_07013_CDS 431 561 429 563 PF07731.14 Cu-oxidase_2 Domain 3 135 137 131.9 1.2e-38 1 CL0026
Cotton_A_13144_CDS 18 132 17 134 PF04133.14 Vps55 Family 2 115 117 117.1 3.9e-34 1 No_clan
Cotton_A_04697_CDS 12 211 12 212 PF04511.15 DER1 Family 1 190 191 205.4 7.3e-61 1 CL0207
Cotton_A_33875_CDS 78 130 72 137 PF13892.6 DBINO Domain 76 128 134 24.9 2e-05 1 CL0023
Cotton_A_33875_CDS 197 457 178 458 PF00176.23 SNF2_N Family 50 349 350 222.3 6.9e-66 1 CL0023
Cotton_A_33875_CDS 480 592 478 592 PF00271.31 Helicase_C Family 3 111 111 68.3 6.6e-19 1 CL0023
Cotton_A_33875_CDS 741 791 738 809 PF09110.11 HAND Domain 4 56 111 34.3 3.3e-08 1 No_clan
Cotton_A_33875_CDS 884 994 884 995 PF09111.10 SLIDE Domain 1 113 114 150.6 1.6e-44 1 CL0123
Cotton_A_03040_CDS 52 606 52 610 PF02990.16 EMP70 Family 1 515 519 619.7 4e-186 1 No_clan
Cotton_A_02665_CDS 44 149 44 151 PF00011.21 HSP20 Family 1 101 102 75.7 2.5e-21 1 CL0190
Cotton_A_18743_CDS 27 103 6 103 PF02519.14 Auxin_inducible Family 17 90 90 93.0 9.7e-27 1 No_clan
Cotton_A_11398_CDS 75 154 72 154 PF05542.11 DUF760 Family 4 84 84 65.8 3.3e-18 1 No_clan
Cotton_A_11398_CDS 249 345 248 346 PF05542.11 DUF760 Family 2 83 84 92.3 1.8e-26 1 No_clan
Cotton_A_28724_CDS 1 513 1 513 PF06273.11 eIF-4B Family 1 502 502 757.0 1.1e-227 1 No_clan
Cotton_A_19024_CDS 26 72 24 73 PF01084.20 Ribosomal_S18 Family 3 49 52 64.7 6.7e-18 1 CL0123
Cotton_A_07484_CDS 6 83 6 83 PF02881.19 SRP54_N Domain 1 75 75 54.8 8.2e-15 1 No_clan
Cotton_A_07484_CDS 102 296 101 296 PF00448.22 SRP54 Domain 2 196 196 261.4 4.3e-78 1 CL0023
Cotton_A_07484_CDS 327 427 327 429 PF02978.19 SRP_SPB Domain 1 97 99 97.1 7.4e-28 1 CL0123
Cotton_A_37177_CDS 231 448 231 448 PF13532.6 2OG-FeII_Oxy_2 Domain 1 196 196 142.8 1.5e-41 1 CL0029
Cotton_A_33610_CDS 6 119 6 119 PF02136.20 NTF2 Domain 1 120 120 131.3 2.6e-38 1 CL0051
Cotton_A_07274_CDS 7 126 7 129 PF13456.6 RVT_3 Domain 1 119 124 43.5 2.3e-11 1 CL0219
Cotton_A_14232_CDS 31 68 29 69 PF08263.12 LRRNT_2 Family 3 40 41 30.1 4.3e-07 1 No_clan
Cotton_A_14232_CDS 146 205 145 205 PF13855.6 LRR_8 Repeat 2 61 61 31.3 1.3e-07 1 CL0022
Cotton_A_14232_CDS 412 434 412 434 PF00560.33 LRR_1 Repeat 1 23 23 9.5 1.7 1 CL0022
Cotton_A_14232_CDS 513 572 512 572 PF13855.6 LRR_8 Repeat 2 61 61 37.8 1.2e-09 1 CL0022
Cotton_A_14232_CDS 659 716 656 716 PF13855.6 LRR_8 Repeat 4 61 61 35.0 9e-09 1 CL0022
Cotton_A_14232_CDS 825 1026 823 1095 PF00069.25 Pkinase Domain 3 200 264 138.2 3.2e-40 1 CL0016
Cotton_A_06198_CDS 57 90 56 91 PF07897.11 EAR Family 2 35 36 64.0 6.7e-18 1 No_clan
Cotton_A_06198_CDS 112 210 112 211 PF16136.5 NINJA_B Family 1 110 111 84.1 8.6e-24 1 No_clan
Cotton_A_06198_CDS 298 363 294 363 PF16135.5 Jas Family 5 76 76 59.2 3.3e-16 1 No_clan
Cotton_A_05789_CDS 31 125 27 126 PF00383.23 dCMP_cyt_deam_1 Family 6 100 101 26.6 4.1e-06 1 CL0109
Cotton_A_05789_CDS 185 387 183 388 PF01872.17 RibD_C Family 3 199 200 140.0 8.6e-41 1 CL0387
Cotton_A_05789_CDS 424 577 424 578 PF08719.11 DUF1768 Domain 1 160 161 106.5 1.5e-30 1 No_clan
Cotton_A_34884_CDS 130 177 130 179 PF13041.6 PPR_2 Repeat 1 48 50 39.4 4.9e-10 1 CL0020
Cotton_A_34884_CDS 231 279 231 280 PF13041.6 PPR_2 Repeat 1 49 50 35.3 9.5e-09 1 CL0020
Cotton_A_34884_CDS 307 332 305 334 PF01535.20 PPR Family 4 29 31 15.6 0.014 1 CL0020
Cotton_A_34884_CDS 419 442 419 445 PF01535.20 PPR Family 4 27 31 11.3 0.33 1 CL0020
Cotton_A_34884_CDS 447 492 444 493 PF13041.6 PPR_2 Repeat 4 49 50 43.5 2.6e-11 1 CL0020
Cotton_A_34884_CDS 519 543 518 544 PF01535.20 PPR Family 2 26 31 16.1 0.0094 1 CL0020
Cotton_A_34884_CDS 618 743 618 744 PF14432.6 DYW_deaminase Family 1 126 127 89.2 1.9e-25 1 CL0109
Cotton_A_20351_CDS 156 181 137 196 PF01764.25 Lipase_3 Family 65 90 142 24.1 2.5e-05 1 CL0028
Cotton_A_04599_CDS 606 654 606 654 PF02042.15 RWP-RK Family 1 49 49 84.9 2.7e-24 1 No_clan
Cotton_A_04599_CDS 832 899 831 902 PF00564.24 PB1 Domain 2 69 84 54.9 6.2e-15 1 CL0072
Cotton_A_01240_CDS 1 68 1 70 PF02458.15 Transferase Family 71 138 434 51.5 6.1e-14 1 CL0149
Cotton_A_24532_CDS 2 38 1 49 PF00421.19 PSII Family 429 465 507 29.0 4.1e-07 1 No_clan
Cotton_A_16508_CDS 3 182 2 182 PF00227.26 Proteasome Domain 6 190 190 138.5 1.8e-40 1 CL0052
Cotton_A_07110_CDS 32 109 31 109 PF14547.6 Hydrophob_seed Domain 2 84 85 46.6 2.9e-12 1 CL0482
Cotton_A_05004_CDS 283 370 272 380 PF00201.18 UDPGT Family 328 410 499 46.3 2.6e-12 1 CL0113
Cotton_A_07044_CDS 42 437 42 437 PF07690.16 MFS_1 Family 1 353 353 123.8 7.5e-36 1 CL0015
Cotton_A_29472_CDS 78 391 78 391 PF14476.6 Chloroplast_duf Family 1 320 320 503.6 1.9e-151 1 No_clan
Cotton_A_08561_CDS 349 437 346 450 PF03763.13 Remorin_C Family 4 92 107 88.0 3.5e-25 1 No_clan
Cotton_A_18461_CDS 33 138 33 138 PF00416.22 Ribosomal_S13 Family 1 128 128 91.3 6.1e-26 1 CL0303
Cotton_A_18414_CDS 44 128 43 128 PF14547.6 Hydrophob_seed Domain 2 85 85 81.4 4.1e-23 1 CL0482
Cotton_A_27175_CDS 11 57 9 58 PF00249.31 Myb_DNA-binding Domain 4 45 46 27.1 3.6e-06 1 CL0123
Cotton_A_00184_CDS 13 145 13 145 PF00380.19 Ribosomal_S9 Family 1 121 121 109.3 1.7e-31 1 CL0329
Cotton_A_20697_CDS 2 135 1 139 PF04043.15 PMEI Domain 3 150 154 37.5 2.7e-09 1 No_clan
Cotton_A_34305_CDS 13 437 11 437 PF02458.15 Transferase Family 3 434 434 277.1 2.2e-82 1 CL0149
Cotton_A_09201_CDS 366 395 365 395 PF01535.20 PPR Family 2 31 31 11.2 0.36 1 CL0020
Cotton_A_09201_CDS 397 443 397 446 PF13041.6 PPR_2 Repeat 1 47 50 56.7 2e-15 1 CL0020
Cotton_A_09201_CDS 464 496 463 496 PF12854.7 PPR_1 Repeat 2 34 34 27.7 1.6e-06 1 CL0020
Cotton_A_09201_CDS 502 548 502 551 PF13041.6 PPR_2 Repeat 1 47 50 53.3 2.4e-14 1 CL0020
Cotton_A_09201_CDS 576 605 575 605 PF01535.20 PPR Family 2 31 31 11.5 0.28 1 CL0020
Cotton_A_09201_CDS 607 654 607 655 PF13041.6 PPR_2 Repeat 1 49 50 37.6 1.8e-09 1 CL0020
Cotton_A_18770_CDS 9 202 9 203 PF02545.14 Maf Domain 1 165 166 145.9 9.6e-43 1 CL0269
Cotton_A_28499_CDS 7 44 3 48 PF00076.22 RRM_1 Domain 28 64 70 27.5 2e-06 1 CL0221
Cotton_A_01981_CDS 46 134 45 135 PF13975.6 gag-asp_proteas Domain 2 91 92 40.0 4.5e-10 1 CL0129
Cotton_A_01981_CDS 726 771 725 773 PF17921.1 Integrase_H2C2 Domain 13 56 58 63.6 1.3e-17 1 CL0361
Cotton_A_01981_CDS 788 895 787 902 PF00665.26 rve Domain 2 111 119 46.8 2.9e-12 1 CL0219
Cotton_A_26482_CDS 34 114 32 154 PF03634.13 TCP Family 3 90 156 114.5 6.3e-33 1 No_clan
Cotton_A_25806_CDS 19 66 10 69 PF00011.21 HSP20 Family 49 96 102 24.7 1.9e-05 1 CL0190
Cotton_A_18303_CDS 46 86 46 98 PF13445.6 zf-RING_UBOX Domain 1 27 39 29.5 5.6e-07 1 CL0229
Cotton_A_12492_CDS 51 321 47 322 PF07714.17 Pkinase_Tyr Domain 5 258 259 136.4 1e-39 1 CL0016
Cotton_A_03544_CDS 52 153 52 154 PF14226.6 DIOX_N Family 1 117 118 68.0 1.2e-18 1 CL0029
Cotton_A_03544_CDS 202 297 199 299 PF03171.20 2OG-FeII_Oxy Domain 4 99 101 85.4 3e-24 1 CL0029
Cotton_A_21718_CDS 21 47 9 47 PF00400.32 WD40 Repeat 12 38 38 15.5 0.023 1 CL0186
Cotton_A_21718_CDS 97 128 92 128 PF00400.32 WD40 Repeat 8 38 38 17.8 0.0044 1 CL0186
Cotton_A_21718_CDS 230 271 225 271 PF00400.32 WD40 Repeat 7 38 38 16.2 0.014 1 CL0186
Cotton_A_37161_CDS 63 153 40 153 PF00583.25 Acetyltransf_1 Family 22 117 117 50.6 2e-13 1 CL0257
Cotton_A_06402_CDS 34 110 34 110 PF03134.19 TB2_DP1_HVA22 Family 1 77 77 99.2 9.2e-29 1 No_clan
Cotton_A_02681_CDS 65 226 64 230 PF00270.29 DEAD Domain 2 171 176 136.1 1.1e-39 1 CL0023
Cotton_A_02681_CDS 266 374 265 374 PF00271.31 Helicase_C Family 2 111 111 100.4 6.8e-29 1 CL0023
Cotton_A_27283_CDS 7 127 7 128 PF00241.20 Cofilin_ADF Domain 1 120 121 132.5 6.4e-39 1 CL0092
Cotton_A_07398_CDS 42 106 42 107 PF05498.11 RALF Family 1 64 65 59.3 5.4e-16 1 No_clan
Cotton_A_11373_CDS 44 103 44 103 PF02704.14 GASA Family 1 60 60 69.1 2.6e-19 1 No_clan
Cotton_A_06604_CDS 135 177 134 177 PF13639.6 zf-RING_2 Domain 2 44 44 32.4 8.7e-08 1 CL0229
Cotton_A_07698_CDS 64 337 63 338 PF00009.27 GTP_EFTU Domain 2 193 194 206.7 2.4e-61 1 CL0023
Cotton_A_07698_CDS 379 445 379 445 PF03144.25 GTP_EFTU_D2 Domain 1 74 74 54.7 1e-14 1 CL0575
Cotton_A_07698_CDS 458 532 458 532 PF14492.6 EFG_II Domain 1 75 75 106.2 6.9e-31 1 CL0437
Cotton_A_07698_CDS 533 653 533 654 PF03764.18 EFG_IV Domain 1 120 121 131.1 1.7e-38 1 CL0329
Cotton_A_07698_CDS 656 742 656 743 PF00679.24 EFG_C Domain 1 88 89 91.3 3e-26 1 CL0437
Cotton_A_06033_CDS 110 185 103 186 PF00439.25 Bromodomain Domain 8 83 84 70.8 7.4e-20 1 No_clan
Cotton_A_08371_CDS 50 135 50 135 PF00203.21 Ribosomal_S19 Domain 1 81 81 115.6 6.7e-34 1 No_clan
Cotton_A_20946_CDS 113 430 108 431 PF03759.13 PRONE Family 41 362 363 480.7 2.3e-144 1 No_clan
Cotton_A_29363_CDS 1 216 1 216 PF00318.20 Ribosomal_S2 Family 1 215 215 258.2 4.2e-77 1 CL0067
Cotton_A_13395_CDS 66 190 66 190 PF02365.15 NAM Family 1 126 126 135.9 1.4e-39 1 No_clan
Cotton_A_08266_CDS 71 104 71 121 PF00786.28 PBD Domain 1 35 59 22.8 8.5e-05 1 No_clan
Cotton_A_08266_CDS 151 270 134 274 PF00620.27 RhoGAP Domain 17 147 152 64.2 1.1e-17 1 CL0409
Cotton_A_12276_CDS 145 559 145 573 PF00854.21 PTR2 Family 1 389 395 355.7 2.8e-106 1 CL0015
Cotton_A_13194_CDS 84 344 83 344 PF08323.11 Glyco_transf_5 Domain 2 244 244 252.6 4.1e-75 1 CL0113
Cotton_A_13194_CDS 397 521 392 561 PF00534.20 Glycos_transf_1 Family 13 140 172 59.5 2.8e-16 1 CL0113
Cotton_A_03603_CDS 144 449 142 451 PF00365.20 PFK Domain 3 282 284 209.2 7.4e-62 1 CL0240
Cotton_A_10127_CDS 4 181 2 181 PF04525.12 LOR Domain 3 187 187 139.4 9.9e-41 1 CL0395
Cotton_A_40424_CDS 9 243 9 276 PF03547.18 Mem_trans Family 1 233 387 353.1 1.2e-105 1 CL0064
Cotton_A_31953_CDS 47 132 18 132 PF00583.25 Acetyltransf_1 Family 33 117 117 53.5 2.6e-14 1 CL0257
Cotton_A_20550_CDS 185 247 185 248 PF00170.21 bZIP_1 Family 1 63 64 42.3 5.9e-11 1 CL0018
Cotton_A_00525_CDS 33 83 33 84 PF00847.20 AP2 Domain 1 53 54 45.0 9.4e-12 1 CL0081
Cotton_A_19822_CDS 334 430 329 440 PF01553.21 Acyltransferase Family 9 119 135 29.4 5.2e-07 1 CL0228
Cotton_A_13188_CDS 35 87 35 87 PF08100.11 Dimerisation Domain 1 51 51 72.4 2.2e-20 1 CL0123
Cotton_A_13188_CDS 143 348 143 348 PF00891.18 Methyltransf_2 Domain 1 210 210 208.7 5.9e-62 1 CL0063
Cotton_A_00531_CDS 196 279 196 280 PF02922.18 CBM_48 Domain 1 83 84 64.8 6.7e-18 1 CL0369
Cotton_A_00531_CDS 345 417 342 440 PF00128.24 Alpha-amylase Domain 10 81 337 47.8 1.4e-12 1 CL0058
Cotton_A_00531_CDS 734 828 734 829 PF02806.18 Alpha-amylase_C Domain 1 95 96 78.8 3.1e-22 1 CL0369
Cotton_A_09182_CDS 46 135 46 135 PF00447.17 HSF_DNA-bind Domain 1 96 96 105.4 1.8e-30 1 CL0123
Cotton_A_26258_CDS 118 217 118 222 PF02362.21 B3 Family 1 95 101 97.8 2.7e-28 1 CL0405
Cotton_A_26518_CDS 88 191 87 192 PF02403.22 Seryl_tRNA_N Domain 2 107 108 69.1 3.4e-19 1 CL0298
Cotton_A_26518_CDS 305 494 300 495 PF00587.25 tRNA-synt_2b Domain 7 178 179 98.4 4.7e-28 1 CL0040
Cotton_A_17812_CDS 64 125 63 125 PF05498.11 RALF Family 2 65 65 105.0 3e-30 1 No_clan
Cotton_A_30832_CDS 217 264 216 265 PF00010.26 HLH Domain 2 52 53 47.2 1.6e-12 1 No_clan
Cotton_A_14500_CDS 50 170 49 170 PF15916.5 DUF4743 Family 2 121 121 124.8 1.7e-36 1 CL0261
Cotton_A_14500_CDS 181 293 171 303 PF00293.28 NUDIX Domain 12 116 131 32.7 6.4e-08 1 CL0261
Cotton_A_21750_CDS 39 105 38 106 PF03810.19 IBN_N Family 2 73 74 48.7 5.2e-13 1 CL0020
Cotton_A_21750_CDS 408 461 408 462 PF13513.6 HEAT_EZ Repeat 1 54 55 42.5 6.4e-11 1 CL0020
Cotton_A_21750_CDS 668 696 666 696 PF02985.22 HEAT Repeat 3 31 31 19.3 0.00093 1 CL0020
Cotton_A_25036_CDS 246 459 242 459 PF00122.20 E1-E2_ATPase Family 5 181 181 70.6 1.2e-19 1 No_clan
Cotton_A_25036_CDS 476 704 475 727 PF00702.26 Hydrolase Domain 2 156 210 31.1 2.7e-07 1 CL0137
Cotton_A_40344_CDS 5 192 4 322 PF15862.5 Coilin_N Family 2 115 139 58.7 5.1e-16 1 No_clan
Cotton_A_17165_CDS 1 216 1 216 PF07279.11 DUF1442 Family 1 218 218 278.7 2.4e-83 1 CL0063
Cotton_A_32290_CDS 56 403 56 425 PF11744.8 ALMT Family 1 356 469 513.2 6.6e-154 1 CL0307
Cotton_A_25383_CDS 57 455 53 459 PF00501.28 AMP-binding Family 7 412 423 298.4 6.5e-89 1 CL0378
Cotton_A_25383_CDS 460 534 459 534 PF13193.6 AMP-binding_C Domain 2 76 76 63.5 2.8e-17 1 CL0531
Cotton_A_19748_CDS 38 813 37 813 PF01496.19 V_ATPase_I Family 2 813 813 998.6 1.9e-300 1 No_clan
Cotton_A_05215_CDS 11 176 9 184 PF03357.21 Snf7 Family 3 170 173 48.3 8.5e-13 1 CL0235
Cotton_A_20370_CDS 71 129 63 130 PF13456.6 RVT_3 Domain 60 123 124 27.2 2.7e-06 1 CL0219
Cotton_A_15226_CDS 164 457 163 458 PF07899.11 Frigida Family 3 288 289 356.2 1.2e-106 1 No_clan
Cotton_A_17516_CDS 15 74 15 86 PF00071.22 Ras Domain 1 60 162 79.2 2.6e-22 1 CL0023
Cotton_A_29853_CDS 6 116 5 116 PF13881.6 Rad60-SLD_2 Domain 2 111 111 136.8 3e-40 1 CL0072
Cotton_A_18166_CDS 31 70 30 70 PF08263.12 LRRNT_2 Family 2 41 41 38.3 1.2e-09 1 No_clan
Cotton_A_18166_CDS 711 982 706 985 PF00069.25 Pkinase Domain 6 258 264 144.1 4.9e-42 1 CL0016
Cotton_A_19658_CDS 14 174 14 175 PF00071.22 Ras Domain 1 161 162 201.2 7.6e-60 1 CL0023
Cotton_A_19349_CDS 24 104 4 104 PF02519.14 Auxin_inducible Family 17 90 90 101.9 1.5e-29 1 No_clan
Cotton_A_12120_CDS 1 65 1 68 PF02969.17 TAF Domain 1 65 66 105.7 1e-30 1 CL0012
Cotton_A_12120_CDS 268 312 265 313 PF07571.13 TAF6_C Family 45 89 90 52.8 3.6e-14 1 CL0020
Cotton_A_38636_CDS 61 109 59 110 PF00010.26 HLH Domain 3 52 53 33.3 3.4e-08 1 No_clan
Cotton_A_16044_CDS 30 315 30 316 PF14576.6 SEO_N Family 1 286 287 404.5 2.2e-121 1 No_clan
Cotton_A_16044_CDS 476 704 475 705 PF14577.6 SEO_C Family 2 231 232 303.0 1.3e-90 1 No_clan
Cotton_A_04078_CDS 6 163 5 163 PF13967.6 RSN1_TM Family 2 156 156 133.7 4.7e-39 1 No_clan
Cotton_A_04078_CDS 184 338 184 338 PF14703.6 PHM7_cyt Domain 1 176 176 74.8 9.5e-21 1 CL0221
Cotton_A_04078_CDS 350 623 349 623 PF02714.15 RSN1_7TM Family 2 274 274 223.3 3.6e-66 1 CL0416
Cotton_A_09368_CDS 111 254 108 256 PF14309.6 DUF4378 Family 10 163 165 56.3 5e-15 1 No_clan
Cotton_A_12692_CDS 13 303 13 303 PF00069.25 Pkinase Domain 1 264 264 239.6 3.8e-71 1 CL0016
Cotton_A_18068_CDS 19 143 19 148 PF05195.16 AMP_N Domain 1 119 123 87.7 4.8e-25 1 CL0356
Cotton_A_18068_CDS 197 462 196 462 PF00557.24 Peptidase_M24 Domain 2 209 209 190.2 3.6e-56 1 No_clan
Cotton_A_33293_CDS 5 62 3 62 PF06624.12 RAMP4 Family 3 60 60 94.7 2.4e-27 1 No_clan
Cotton_A_33339_CDS 292 314 286 318 PF13540.6 RCC1_2 Repeat 4 26 30 22.2 8.9e-05 1 CL0186
Cotton_A_03125_CDS 126 145 125 146 PF00642.24 zf-CCCH Family 6 26 27 24.7 1.6e-05 1 CL0537
Cotton_A_14038_CDS 179 247 179 255 PF07714.17 Pkinase_Tyr Domain 1 72 259 26.9 2.6e-06 1 CL0016
Cotton_A_14038_CDS 254 348 249 348 PF07714.17 Pkinase_Tyr Domain 169 259 259 49.3 3.9e-13 1 CL0016
Cotton_A_21979_CDS 11 95 9 134 PF18052.1 Rx_N Domain 3 84 93 80.4 8.7e-23 1 No_clan
Cotton_A_21979_CDS 170 250 167 259 PF00931.22 NB-ARC Domain 4 84 252 49.9 2.3e-13 1 CL0023
Cotton_A_11132_CDS 77 484 75 484 PF01603.20 B56 Family 3 415 415 574.5 1.2e-172 1 CL0020
Cotton_A_00692_CDS 19 72 18 76 PF05347.15 Complex1_LYR Family 2 54 59 28.7 9.9e-07 1 CL0491
Cotton_A_29124_CDS 113 163 112 163 PF00847.20 AP2 Domain 2 54 54 46.1 4.1e-12 1 CL0081
Cotton_A_07464_CDS 208 255 207 256 PF13041.6 PPR_2 Repeat 2 49 50 38.7 8.4e-10 1 CL0020
Cotton_A_07464_CDS 282 308 280 310 PF01535.20 PPR Family 3 29 31 30.3 2.8e-07 1 CL0020
Cotton_A_07464_CDS 309 356 308 357 PF13041.6 PPR_2 Repeat 2 49 50 36.4 4.3e-09 1 CL0020
Cotton_A_07464_CDS 383 407 382 410 PF01535.20 PPR Family 2 26 31 14.0 0.046 1 CL0020
Cotton_A_07464_CDS 482 606 482 606 PF14432.6 DYW_deaminase Family 1 127 127 131.6 1.4e-38 1 CL0109
Cotton_A_28263_CDS 104 436 104 437 PF01546.28 Peptidase_M20 Family 1 206 207 118.8 2.5e-34 1 CL0035
Cotton_A_28263_CDS 222 326 216 334 PF07687.14 M20_dimer Domain 7 100 109 22.7 6.8e-05 1 No_clan
Cotton_A_05708_CDS 18 52 18 56 PF02736.19 Myosin_N Domain 1 35 40 40.9 1.3e-10 1 CL0010
Cotton_A_05708_CDS 72 728 72 728 PF00063.21 Myosin_head Domain 1 677 677 854.4 5.3e-257 1 CL0023
Cotton_A_05708_CDS 745 763 744 764 PF00612.27 IQ Motif 2 20 21 14.9 0.017 1 CL0220
Cotton_A_05708_CDS 767 782 767 787 PF00612.27 IQ Motif 1 16 21 16.4 0.0054 1 CL0220
Cotton_A_05708_CDS 793 811 792 812 PF00612.27 IQ Motif 2 20 21 14.4 0.024 1 CL0220
Cotton_A_05708_CDS 864 883 863 883 PF00612.27 IQ Motif 2 21 21 13.9 0.035 1 CL0220
Cotton_A_05708_CDS 1356 1460 1356 1461 PF01843.19 DIL Family 1 103 104 89.1 1.9e-25 1 No_clan
Cotton_A_22941_CDS 96 180 40 180 PF05208.13 ALG3 Family 274 358 358 97.5 1.1e-27 1 CL0111
Cotton_A_41276_CDS 36 507 36 512 PF00067.22 p450 Domain 1 457 463 332.6 3.6e-99 1 No_clan
Cotton_A_35955_CDS 3 74 2 75 PF02798.20 GST_N Domain 2 75 76 65.7 3.5e-18 1 CL0172
Cotton_A_35955_CDS 115 190 88 193 PF00043.25 GST_C Domain 21 90 93 31.3 1.8e-07 1 CL0497
Cotton_A_30955_CDS 6 162 5 163 PF05907.13 DUF866 Family 2 154 155 162.3 7.9e-48 1 No_clan
Cotton_A_21126_CDS 7 76 1 78 PF11960.8 DUF3474 Family 67 134 135 90.9 7.5e-26 1 No_clan
Cotton_A_21126_CDS 87 339 51 343 PF00487.24 FA_desaturase Domain 2 247 254 112.2 3.6e-32 1 No_clan
Cotton_A_22422_CDS 28 491 27 500 PF00067.22 p450 Domain 3 453 463 194.5 2.7e-57 1 No_clan
Cotton_A_25745_CDS 256 548 225 549 PF00497.20 SBP_bac_3 Domain 44 224 225 61.3 8.8e-17 1 CL0177
Cotton_A_25745_CDS 333 579 330 582 PF00060.26 Lig_chan Family 4 146 149 66.1 3e-18 1 CL0030
Cotton_A_08465_CDS 68 172 65 174 PF02341.15 RcbX Family 9 108 111 107.8 3.3e-31 1 No_clan
Cotton_A_13200_CDS 150 183 150 184 PF08880.11 QLQ Domain 1 34 35 53.8 1.2e-14 1 No_clan
Cotton_A_13200_CDS 207 249 207 249 PF08879.10 WRC Domain 1 43 43 72.0 2.2e-20 1 No_clan
Cotton_A_14893_CDS 8 81 2 82 PF05922.16 Inhibitor_I9 Domain 14 81 82 36.4 6.2e-09 1 CL0570
Cotton_A_14893_CDS 105 541 105 566 PF00082.22 Peptidase_S8 Domain 1 284 298 160.4 5.8e-47 1 No_clan
Cotton_A_14893_CDS 618 722 618 723 PF17766.1 fn3_6 Domain 1 98 99 99.3 1.1e-28 1 CL0159
Cotton_A_19572_CDS 80 298 79 298 PF04720.12 PDDEXK_6 Family 2 221 221 262.2 4.5e-78 1 No_clan
Cotton_A_23840_CDS 181 246 175 251 PF00117.28 GATase Domain 107 176 190 25.6 8.8e-06 1 CL0014
Cotton_A_23840_CDS 281 572 281 573 PF00977.21 His_biosynth Family 1 228 229 152.3 1.4e-44 1 CL0036
Cotton_A_26738_CDS 430 494 430 494 PF00226.31 DnaJ Domain 1 63 63 66.1 2.2e-18 1 CL0392
Cotton_A_26738_CDS 540 637 539 637 PF14901.6 Jiv90 Domain 2 93 93 121.1 1.6e-35 1 No_clan
Cotton_A_17970_CDS 128 175 128 176 PF13041.6 PPR_2 Repeat 1 48 50 38.2 1.2e-09 1 CL0020
Cotton_A_17970_CDS 204 227 201 228 PF01535.20 PPR Family 4 27 31 10.7 0.5 1 CL0020
Cotton_A_17970_CDS 229 277 229 279 PF13041.6 PPR_2 Repeat 1 48 50 30.8 2.4e-07 1 CL0020
Cotton_A_17970_CDS 306 332 306 333 PF01535.20 PPR Family 4 30 31 18.4 0.0017 1 CL0020
Cotton_A_17970_CDS 334 360 334 364 PF01535.20 PPR Family 1 27 31 23.5 4.1e-05 1 CL0020
Cotton_A_17970_CDS 429 475 428 477 PF13041.6 PPR_2 Repeat 2 48 50 39.8 3.8e-10 1 CL0020
Cotton_A_17970_CDS 503 525 502 526 PF01535.20 PPR Family 2 24 31 17.1 0.0046 1 CL0020
Cotton_A_17087_CDS 65 158 30 159 PF00583.25 Acetyltransf_1 Family 31 116 117 68.2 7.1e-19 1 CL0257
Cotton_A_11081_CDS 68 323 68 324 PF02485.21 Branch Family 1 246 247 188.0 2e-55 1 CL0110
Cotton_A_22373_CDS 154 241 144 245 PF00297.22 Ribosomal_L3 Family 205 290 369 60.9 1e-16 1 CL0575
Cotton_A_38591_CDS 296 347 295 348 PF14416.6 PMR5N Domain 2 52 53 77.2 8.8e-22 1 No_clan
Cotton_A_38591_CDS 349 637 349 638 PF13839.6 PC-Esterase Family 1 282 283 335.0 4.7e-100 1 CL0264
Cotton_A_24783_CDS 67 269 56 269 PF12706.7 Lactamase_B_2 Domain 31 201 201 50.6 1.7e-13 1 CL0381
Cotton_A_05383_CDS 65 135 59 137 PF03061.22 4HBT Domain 7 77 79 28.3 1.7e-06 1 CL0050
Cotton_A_25456_CDS 176 583 160 584 PF01425.21 Amidase Family 20 450 451 293.9 2.2e-87 1 No_clan
Cotton_A_15415_CDS 1 134 1 134 PF00006.25 ATP-synt_ab Domain 79 213 213 135.9 1.5e-39 1 CL0023
Cotton_A_05464_CDS 40 185 36 185 PF04535.12 DUF588 Domain 5 150 150 146.3 5.7e-43 1 CL0396
Cotton_A_09202_CDS 70 326 68 326 PF00069.25 Pkinase Domain 3 264 264 258.8 5.2e-77 1 CL0016
Cotton_A_09202_CDS 372 433 371 435 PF13499.6 EF-hand_7 Domain 2 69 71 44.0 2.3e-11 1 CL0220
Cotton_A_09202_CDS 444 507 443 507 PF13499.6 EF-hand_7 Domain 2 71 71 47.9 1.4e-12 1 CL0220
Cotton_A_04679_CDS 64 115 64 115 PF02991.16 Atg8 Domain 53 104 104 74.6 6.1e-21 1 CL0072
Cotton_A_22450_CDS 6 153 6 154 PF00056.23 Ldh_1_N Family 1 140 141 116.1 1.2e-33 1 CL0063
Cotton_A_22450_CDS 157 327 157 330 PF02866.18 Ldh_1_C Domain 1 163 167 127.5 4.7e-37 1 CL0341
Cotton_A_01180_CDS 71 203 62 206 PF02815.19 MIR Domain 34 181 186 46.8 2.8e-12 1 CL0066
Cotton_A_07155_CDS 25 162 22 164 PF05903.14 Peptidase_C97 Domain 4 149 151 161.7 1.1e-47 1 CL0125
Cotton_A_22070_CDS 76 104 76 106 PF01535.20 PPR Family 1 29 31 33.8 2.2e-08 1 CL0020
Cotton_A_22070_CDS 107 137 107 137 PF01535.20 PPR Family 1 31 31 36.7 2.6e-09 1 CL0020
Cotton_A_22070_CDS 138 164 138 167 PF01535.20 PPR Family 1 27 31 28.2 1.4e-06 1 CL0020
Cotton_A_22070_CDS 168 214 166 215 PF13041.6 PPR_2 Repeat 3 49 50 35.2 1e-08 1 CL0020
Cotton_A_22070_CDS 268 314 267 316 PF13041.6 PPR_2 Repeat 2 48 50 47.2 1.8e-12 1 CL0020
Cotton_A_22070_CDS 342 366 341 369 PF01535.20 PPR Family 2 26 31 11.5 0.29 1 CL0020
Cotton_A_00594_CDS 89 195 89 231 PF13460.6 NAD_binding_10 Domain 1 102 184 46.1 5.1e-12 1 CL0063
Cotton_A_28492_CDS 40 243 39 243 PF01027.20 Bax1-I Family 2 207 207 159.2 1.2e-46 1 CL0453
Cotton_A_28620_CDS 79 261 79 262 PF00174.19 Oxidored_molyb Domain 1 171 172 185.6 5.6e-55 1 CL0072
Cotton_A_28620_CDS 285 424 284 426 PF03404.16 Mo-co_dimer Domain 2 136 138 121.4 2.6e-35 1 CL0159
Cotton_A_10876_CDS 3 306 3 306 PF13266.6 DUF4057 Family 1 299 299 490.7 1.9e-147 1 No_clan
Cotton_A_05366_CDS 23 223 22 223 PF01680.17 SOR_SNZ Domain 2 207 207 278.6 3.1e-83 1 CL0036
Cotton_A_21447_CDS 56 212 55 225 PF13191.6 AAA_16 Domain 2 162 170 44.0 3e-11 1 CL0023
Cotton_A_21447_CDS 245 530 245 530 PF14630.6 ORC5_C Family 1 285 285 209.4 7.7e-62 1 No_clan
Cotton_A_41044_CDS 98 126 98 126 PF01535.20 PPR Family 3 31 31 14.5 0.032 1 CL0020
Cotton_A_41044_CDS 195 241 194 243 PF13041.6 PPR_2 Repeat 2 48 50 40.1 3e-10 1 CL0020
Cotton_A_41044_CDS 268 294 267 297 PF01535.20 PPR Family 2 28 31 14.7 0.026 1 CL0020
Cotton_A_41044_CDS 296 339 295 343 PF13041.6 PPR_2 Repeat 2 45 50 43.8 2.2e-11 1 CL0020
Cotton_A_41044_CDS 387 443 384 445 PF13812.6 PPR_3 Repeat 4 60 63 33.0 4.7e-08 1 CL0020
Cotton_A_41044_CDS 472 497 472 499 PF01535.20 PPR Family 4 29 31 14.7 0.026 1 CL0020
Cotton_A_41044_CDS 498 544 497 546 PF13041.6 PPR_2 Repeat 2 48 50 34.6 1.6e-08 1 CL0020
Cotton_A_41044_CDS 598 645 598 647 PF13041.6 PPR_2 Repeat 1 48 50 45.1 8.2e-12 1 CL0020
Cotton_A_41044_CDS 674 697 672 699 PF01535.20 PPR Family 3 26 31 12.0 0.19 1 CL0020
Cotton_A_36625_CDS 14 261 14 285 PF07065.14 D123 Family 1 260 306 236.6 3.5e-70 1 CL0179
Cotton_A_17680_CDS 100 209 94 210 PF02142.22 MGS Domain 7 94 95 77.0 9.9e-22 1 No_clan
Cotton_A_17680_CDS 215 538 215 538 PF01808.18 AICARFT_IMPCHas Family 1 296 296 367.9 4e-110 1 CL0109
Cotton_A_09960_CDS 83 207 83 208 PF04424.13 MINDY_DUB Family 1 116 117 124.3 2.4e-36 1 No_clan
Cotton_A_25499_CDS 19 159 17 161 PF00892.20 EamA Family 3 135 137 45.7 6.8e-12 1 CL0184
Cotton_A_25499_CDS 191 329 190 330 PF00892.20 EamA Family 2 136 137 45.9 6.1e-12 1 CL0184
Cotton_A_16339_CDS 104 475 102 475 PF03514.14 GRAS Family 3 374 374 319.2 3.4e-95 1 CL0063
Cotton_A_03087_CDS 50 100 50 100 PF12906.7 RINGv Domain 1 48 48 42.6 4.8e-11 1 CL0229
Cotton_A_20730_CDS 161 402 160 402 PF04788.12 DUF620 Family 2 243 243 399.5 4.7e-120 1 No_clan
Cotton_A_15198_CDS 24 345 24 346 PF00332.18 Glyco_hydro_17 Domain 1 312 313 364.4 6.3e-109 1 CL0058
Cotton_A_15198_CDS 372 443 371 443 PF07983.13 X8 Domain 2 76 76 66.5 2.6e-18 1 No_clan
Cotton_A_23746_CDS 199 222 198 223 PF00642.24 zf-CCCH Family 2 26 27 28.0 1.5e-06 1 CL0537
Cotton_A_23746_CDS 344 389 341 395 PF00076.22 RRM_1 Domain 10 58 70 26.1 5.4e-06 1 CL0221
Cotton_A_24582_CDS 83 259 23 259 PF03140.15 DUF247 Family 215 397 397 151.5 3.9e-44 1 No_clan
Cotton_A_00814_CDS 187 271 187 271 PF01985.21 CRS1_YhbY Domain 1 84 84 70.0 1.5e-19 1 No_clan
Cotton_A_28152_CDS 14 94 14 94 PF12609.8 DUF3774 Family 1 74 74 107.8 4.3e-31 1 No_clan
Cotton_A_08301_CDS 194 246 193 246 PF04578.13 DUF594 Family 3 55 55 71.6 2.8e-20 1 No_clan
Cotton_A_04267_CDS 14 65 3 69 PF00076.22 RRM_1 Domain 2 50 70 21.3 0.00017 1 CL0221
Cotton_A_13552_CDS 70 249 68 250 PF00316.20 FBPase Domain 3 188 189 189.2 5e-56 1 CL0171
Cotton_A_37555_CDS 95 141 94 142 PF13041.6 PPR_2 Repeat 2 48 50 35.9 6.1e-09 1 CL0020
Cotton_A_37555_CDS 170 193 168 196 PF01535.20 PPR Family 4 27 31 16.8 0.0057 1 CL0020
Cotton_A_37555_CDS 198 224 198 227 PF01535.20 PPR Family 1 27 31 22.6 7.9e-05 1 CL0020
Cotton_A_37555_CDS 260 296 257 298 PF13812.6 PPR_3 Repeat 8 44 63 18.4 0.0017 1 CL0020
Cotton_A_37555_CDS 297 344 296 345 PF13041.6 PPR_2 Repeat 2 49 50 39.4 5.1e-10 1 CL0020
Cotton_A_37555_CDS 372 393 371 395 PF01535.20 PPR Family 4 25 31 13.4 0.068 1 CL0020
Cotton_A_37555_CDS 398 446 398 447 PF13041.6 PPR_2 Repeat 1 49 50 47.4 1.5e-12 1 CL0020
Cotton_A_37555_CDS 572 695 572 696 PF14432.6 DYW_deaminase Family 1 126 127 142.2 7.3e-42 1 CL0109
Cotton_A_11139_CDS 40 145 38 146 PF04398.12 DUF538 Family 3 111 112 106.1 1.3e-30 1 No_clan
Cotton_A_08932_CDS 23 71 9 82 PF01453.24 B_lectin Domain 45 91 105 46.1 5.7e-12 1 No_clan
Cotton_A_08932_CDS 103 176 100 198 PF13947.6 GUB_WAK_bind Domain 4 79 106 28.9 1.5e-06 1 No_clan
Cotton_A_08932_CDS 347 448 341 451 PF07714.17 Pkinase_Tyr Domain 170 256 259 33.8 2.1e-08 1 CL0016
Cotton_A_37618_CDS 7 116 6 117 PF13881.6 Rad60-SLD_2 Domain 2 110 111 112.4 1.1e-32 1 CL0072
Cotton_A_14452_CDS 32 82 32 91 PF00314.17 Thaumatin Domain 1 58 214 33.0 4.5e-08 1 CL0293
Cotton_A_13886_CDS 56 548 55 549 PF02990.16 EMP70 Family 2 518 519 486.1 1.2e-145 1 No_clan
Cotton_A_07915_CDS 123 166 122 166 PF13639.6 zf-RING_2 Domain 2 44 44 51.6 8.4e-14 1 CL0229
Cotton_A_22005_CDS 78 208 76 208 PF02531.16 PsaD Family 3 136 136 228.2 1.9e-68 1 No_clan
Cotton_A_32549_CDS 21 240 21 240 PF02309.16 AUX_IAA Family 1 237 237 278.0 7.6e-83 1 CL0072
Cotton_A_17214_CDS 85 116 83 116 PF06200.14 tify Domain 3 34 34 46.7 1.4e-12 1 No_clan
Cotton_A_17214_CDS 149 191 149 192 PF06203.14 CCT Motif 1 43 44 58.7 4.2e-16 1 CL0281
Cotton_A_17214_CDS 222 258 222 259 PF00320.27 GATA Domain 1 35 36 49.8 1.9e-13 1 CL0167
Cotton_A_30638_CDS 174 222 172 222 PF00249.31 Myb_DNA-binding Domain 3 46 46 34.7 1.5e-08 1 CL0123
Cotton_A_19537_CDS 190 357 189 360 PF00069.25 Pkinase Domain 2 160 264 100.2 1.2e-28 1 CL0016
Cotton_A_30140_CDS 5 262 3 262 PF00069.25 Pkinase Domain 3 264 264 186.3 6.7e-55 1 CL0016
Cotton_A_02008_CDS 425 572 425 580 PF03141.16 Methyltransf_29 Family 1 150 506 234.3 2.3e-69 1 CL0063
Cotton_A_27324_CDS 9 186 6 186 PF04675.14 DNA_ligase_A_N Family 4 173 173 126.0 2e-36 1 No_clan
Cotton_A_05620_CDS 41 140 5 172 PF05653.14 Mg_trans_NIPA Family 45 146 295 28.7 6.7e-07 1 CL0184
Cotton_A_15416_CDS 1 76 1 76 PF02788.16 RuBisCO_large_N Domain 47 120 120 82.2 3.2e-23 1 No_clan
Cotton_A_15416_CDS 86 137 86 137 PF00016.20 RuBisCO_large Domain 1 52 299 76.3 2.3e-21 1 No_clan
Cotton_A_16596_CDS 135 185 134 186 PF00847.20 AP2 Domain 2 53 54 50.4 1.9e-13 1 CL0081
Cotton_A_36277_CDS 14 175 14 176 PF00071.22 Ras Domain 1 161 162 188.2 7.6e-56 1 CL0023
Cotton_A_00032_CDS 153 280 137 280 PF00134.23 Cyclin_N Domain 16 127 127 58.1 6.9e-16 1 CL0065
Cotton_A_08290_CDS 25 636 12 636 PF00888.22 Cullin Family 7 618 618 611.2 2.3e-183 1 No_clan
Cotton_A_08290_CDS 663 725 663 725 PF10557.9 Cullin_Nedd8 Domain 1 63 63 92.7 1e-26 1 CL0123
Cotton_A_32923_CDS 162 198 162 200 PF01479.25 S4 Domain 1 38 48 34.9 9e-09 1 CL0492
Cotton_A_32923_CDS 238 378 237 383 PF00849.22 PseudoU_synth_2 Family 2 155 160 61.3 1.1e-16 1 CL0649
Cotton_A_08383_CDS 86 238 81 245 PF00160.21 Pro_isomerase Domain 9 149 158 68.0 1.1e-18 1 CL0475
Cotton_A_05970_CDS 5 223 5 223 PF02309.16 AUX_IAA Family 1 237 237 277.6 1e-82 1 CL0072
Cotton_A_16372_CDS 31 63 26 63 PF00187.19 Chitin_bind_1 Domain 7 38 38 31.7 1.6e-07 1 No_clan
Cotton_A_26894_CDS 15 214 15 221 PF01070.18 FMN_dh Domain 1 206 348 190.4 4.3e-56 1 CL0036
Cotton_A_13074_CDS 7 133 7 133 PF02365.15 NAM Family 1 126 126 139.3 1.2e-40 1 No_clan
Cotton_A_21896_CDS 25 207 24 207 PF01105.24 EMP24_GP25L Domain 2 182 182 163.9 3.7e-48 1 CL0521
Cotton_A_32043_CDS 41 309 40 310 PF00069.25 Pkinase Domain 2 260 264 148.7 2e-43 1 CL0016
Cotton_A_01555_CDS 115 262 95 263 PF10294.9 Methyltransf_16 Family 22 173 174 76.2 2.5e-21 1 CL0063
Cotton_A_02033_CDS 45 483 45 483 PF02897.15 Peptidase_S9_N Domain 1 414 414 145.4 2e-42 1 CL0186
Cotton_A_02033_CDS 583 753 579 794 PF00326.21 Peptidase_S9 Domain 5 172 212 132.9 1e-38 1 CL0028
Cotton_A_36116_CDS 89 211 87 214 PF15413.6 PH_11 Domain 3 102 105 80.9 7.9e-23 1 CL0266
Cotton_A_36116_CDS 421 771 420 771 PF01237.18 Oxysterol_BP Family 2 373 373 402.2 1.8e-120 1 No_clan
Cotton_A_34222_CDS 20 66 19 77 PF02365.15 NAM Family 2 50 126 52.8 7.1e-14 1 No_clan
Cotton_A_34387_CDS 43 148 42 148 PF04398.12 DUF538 Family 2 112 112 104.5 4.1e-30 1 No_clan
Cotton_A_24953_CDS 35 210 35 210 PF00270.29 DEAD Domain 1 176 176 147.0 4.6e-43 1 CL0023
Cotton_A_24953_CDS 260 372 259 372 PF00271.31 Helicase_C Family 2 111 111 80.0 1.6e-22 1 CL0023
Cotton_A_24953_CDS 421 479 419 479 PF13959.6 DUF4217 Domain 3 61 61 69.0 3e-19 1 No_clan
Cotton_A_00589_CDS 25 92 25 95 PF00240.23 ubiquitin Domain 1 68 72 75.7 1.7e-21 1 CL0072
Cotton_A_00589_CDS 506 542 505 542 PF00627.31 UBA Domain 2 37 37 34.6 1.3e-08 1 CL0214
Cotton_A_29715_CDS 7 251 7 252 PF06813.13 Nodulin-like Family 1 249 250 271.6 6e-81 1 CL0015
Cotton_A_25597_CDS 1 39 1 39 PF00133.22 tRNA-synt_1 Family 564 602 602 34.1 9.4e-09 1 CL0039
Cotton_A_25597_CDS 96 169 94 172 PF08264.13 Anticodon_1 Domain 3 77 152 62.3 4.8e-17 1 CL0258
Cotton_A_23099_CDS 131 180 122 182 PF09335.11 SNARE_assoc Family 69 118 120 36.5 5.8e-09 1 No_clan
Cotton_A_13896_CDS 74 401 73 401 PF03104.19 DNA_pol_B_exo1 Family 2 337 337 276.6 2.8e-82 1 CL0219
Cotton_A_13896_CDS 761 1041 744 1100 PF00136.21 DNA_pol_B Family 139 413 459 59.2 3e-16 1 CL0194
Cotton_A_23189_CDS 2 105 1 106 PF00179.26 UQ_con Domain 35 139 140 129.9 5.1e-38 1 CL0208
Cotton_A_23189_CDS 118 253 117 254 PF00179.26 UQ_con Domain 2 139 140 147.4 2.1e-43 1 CL0208
Cotton_A_04677_CDS 33 146 32 148 PF07732.15 Cu-oxidase_3 Domain 2 117 119 125.9 7.6e-37 1 CL0026
Cotton_A_04677_CDS 159 295 158 296 PF00394.22 Cu-oxidase Domain 2 158 159 130.5 5.7e-38 1 CL0026
Cotton_A_04677_CDS 380 513 376 517 PF07731.14 Cu-oxidase_2 Domain 5 133 137 94.2 5.2e-27 1 CL0026
Cotton_A_07953_CDS 34 204 33 204 PF03637.17 Mob1_phocein Family 2 169 169 277.9 3.1e-83 1 No_clan
Cotton_A_28036_CDS 79 255 77 257 PF01699.24 Na_Ca_ex Family 4 149 151 29.9 4.6e-07 1 No_clan
Cotton_A_28036_CDS 299 361 296 364 PF13499.6 EF-hand_7 Domain 4 68 71 34.8 1.7e-08 1 CL0220
Cotton_A_28036_CDS 425 569 424 570 PF01699.24 Na_Ca_ex Family 2 150 151 47.6 1.7e-12 1 No_clan
Cotton_A_29739_CDS 3 252 1 252 PF03936.16 Terpene_synth_C Domain 23 267 267 261.5 7.9e-78 1 CL0613
Cotton_A_05733_CDS 47 179 43 179 PF00790.19 VHS Domain 6 141 141 92.8 1.7e-26 1 CL0009
Cotton_A_05733_CDS 241 313 241 315 PF03127.14 GAT Domain 1 74 77 60.7 1.3e-16 1 No_clan
Cotton_A_09925_CDS 143 241 140 242 PF00254.28 FKBP_C Domain 4 93 94 71.4 6e-20 1 CL0487
Cotton_A_37018_CDS 136 190 135 191 PF00046.29 Homeodomain Domain 2 56 57 62.7 2.2e-17 1 CL0123
Cotton_A_37018_CDS 192 226 192 227 PF02183.18 HALZ Coiled-coil 1 42 43 38.6 9.3e-10 1 No_clan
Cotton_A_20545_CDS 48 189 44 194 PF01694.22 Rhomboid Family 5 145 150 26.8 4.4e-06 1 CL0207
Cotton_A_20545_CDS 242 277 241 277 PF00627.31 UBA Domain 2 37 37 41.7 7.7e-11 1 CL0214
Cotton_A_01766_CDS 31 80 30 99 PF13621.6 Cupin_8 Domain 2 55 254 33.7 3e-08 1 CL0029
Cotton_A_34449_CDS 31 485 29 486 PF00999.21 Na_H_Exchanger Family 3 380 381 209.4 6.9e-62 1 CL0064
Cotton_A_12476_CDS 43 159 42 183 PF00141.23 peroxidase Domain 2 112 229 126.5 1.2e-36 1 CL0617
Cotton_A_11013_CDS 1 190 1 190 PF14009.6 DUF4228 Family 1 179 179 117.2 1.1e-33 1 No_clan
Cotton_A_05541_CDS 243 496 242 500 PF03081.15 Exo70 Family 2 261 376 230.1 4.2e-68 1 CL0295
Cotton_A_34899_CDS 60 112 59 112 PF14416.6 PMR5N Domain 2 53 53 76.2 1.8e-21 1 No_clan
Cotton_A_34899_CDS 113 405 113 406 PF13839.6 PC-Esterase Family 1 282 283 327.1 1.2e-97 1 CL0264
Cotton_A_19820_CDS 143 200 143 200 PF03106.15 WRKY Domain 1 59 59 93.4 7.2e-27 1 CL0274
Cotton_A_16545_CDS 62 289 58 293 PF00182.19 Glyco_hydro_19 Domain 5 227 232 210.9 2.3e-62 1 CL0037
Cotton_A_28234_CDS 20 362 19 365 PF00224.21 PK Family 2 345 348 530.7 1.4e-159 1 CL0151
Cotton_A_28234_CDS 380 499 380 507 PF02887.16 PK_C Domain 1 104 117 81.5 5.3e-23 1 No_clan
Cotton_A_08166_CDS 518 648 518 649 PF00004.29 AAA Domain 1 131 132 128.9 1.6e-37 1 CL0023
Cotton_A_08166_CDS 671 714 671 716 PF17862.1 AAA_lid_3 Domain 1 44 45 41.7 7.2e-11 1 CL0671
Cotton_A_21160_CDS 5 274 2 275 PF00069.25 Pkinase Domain 44 262 264 121.7 3.5e-35 1 CL0016
Cotton_A_21160_CDS 426 664 417 664 PF13393.6 tRNA-synt_His Domain 101 310 310 53.6 2e-14 1 CL0040
Cotton_A_21160_CDS 682 779 677 784 PF12745.7 HGTP_anticodon2 Domain 7 106 263 36.9 2.8e-09 1 CL0458
Cotton_A_05643_CDS 409 494 407 495 PF13837.6 Myb_DNA-bind_4 Domain 3 89 90 71.9 4.3e-20 1 CL0123
Cotton_A_12108_CDS 78 339 75 340 PF03009.17 GDPD Family 29 258 259 24.5 1.9e-05 1 CL0384
Cotton_A_12108_CDS 367 656 367 656 PF03009.17 GDPD Family 2 259 259 106.0 2.7e-30 1 CL0384
Cotton_A_16664_CDS 12 57 12 58 PF00249.31 Myb_DNA-binding Domain 1 45 46 61.0 8.8e-17 1 CL0123
Cotton_A_16664_CDS 66 107 64 109 PF00249.31 Myb_DNA-binding Domain 3 44 46 52.8 3.3e-14 1 CL0123
Cotton_A_03241_CDS 20 136 20 136 PF02136.20 NTF2 Domain 1 120 120 109.4 1.5e-31 1 CL0051
Cotton_A_03241_CDS 303 360 303 369 PF00076.22 RRM_1 Domain 1 60 70 39.0 5.1e-10 1 CL0221
Cotton_A_27342_CDS 31 172 31 176 PF01255.19 Prenyltransf Family 1 162 224 102.6 2.1e-29 1 No_clan
Cotton_A_36160_CDS 33 160 33 160 PF01092.19 Ribosomal_S6e Family 1 125 125 187.0 1.1e-55 1 No_clan
Cotton_A_12592_CDS 12 67 10 70 PF00403.26 HMA Domain 2 58 62 33.2 5.2e-08 1 No_clan
Cotton_A_12592_CDS 106 162 103 164 PF00403.26 HMA Domain 3 59 62 49.1 5.8e-13 1 No_clan
Cotton_A_30303_CDS 6 96 5 112 PF14226.6 DIOX_N Family 2 98 118 54.0 2.7e-14 1 CL0029
Cotton_A_30303_CDS 160 254 155 254 PF03171.20 2OG-FeII_Oxy Domain 6 101 101 97.5 5.1e-28 1 CL0029
Cotton_A_18031_CDS 5 153 3 153 PF00582.26 Usp Domain 3 141 141 89.6 2.5e-25 1 CL0039
Cotton_A_30721_CDS 147 172 146 174 PF01535.20 PPR Family 4 29 31 14.7 0.027 1 CL0020
Cotton_A_30721_CDS 282 331 282 331 PF13041.6 PPR_2 Repeat 1 50 50 43.2 3.3e-11 1 CL0020
Cotton_A_40537_CDS 13 73 12 78 PF00538.19 Linker_histone Domain 2 63 74 40.0 3.8e-10 1 CL0123
Cotton_A_40537_CDS 109 119 108 120 PF02178.19 AT_hook Motif 2 12 13 13.2 0.062 1 No_clan
Cotton_A_40537_CDS 131 141 131 143 PF02178.19 AT_hook Motif 1 11 13 9.7 0.83 1 No_clan
Cotton_A_40537_CDS 160 170 159 171 PF02178.19 AT_hook Motif 2 12 13 14.3 0.028 1 No_clan
Cotton_A_05101_CDS 22 227 10 227 PF00141.23 peroxidase Domain 11 229 229 155.1 2.2e-45 1 CL0617
Cotton_A_11752_CDS 14 128 14 129 PF18055.1 RPN6_N Domain 1 116 117 119.6 8.4e-35 1 No_clan
Cotton_A_11752_CDS 285 386 284 388 PF01399.27 PCI Domain 2 103 105 72.5 3.5e-20 1 CL0123
Cotton_A_11752_CDS 392 418 392 418 PF18503.1 RPN6_C_helix Domain 1 27 27 42.3 4.3e-11 1 No_clan
Cotton_A_07436_CDS 310 512 309 520 PF16507.5 BLM10_mid Family 2 187 524 109.5 1.7e-31 1 No_clan
Cotton_A_07436_CDS 519 825 508 829 PF16507.5 BLM10_mid Family 236 520 524 70.8 9.2e-20 1 No_clan
Cotton_A_07436_CDS 1728 1813 1726 1813 PF11919.8 DUF3437 Family 3 88 88 97.7 2.8e-28 1 No_clan
Cotton_A_19051_CDS 78 169 78 177 PF01453.24 B_lectin Domain 1 95 105 61.3 1e-16 1 No_clan
Cotton_A_24958_CDS 23 425 22 434 PF01490.18 Aa_trans Family 2 399 409 180.3 4.9e-53 1 CL0062
Cotton_A_22583_CDS 1 46 1 61 PF00931.22 NB-ARC Domain 183 227 252 33.7 2.1e-08 1 CL0023
Cotton_A_03637_CDS 54 131 53 132 PF01698.16 SAM_LFY Domain 2 79 80 144.4 7.5e-43 1 CL0003
Cotton_A_03637_CDS 222 387 221 389 PF17538.2 C_LFY_FLO Domain 2 167 169 352.4 2.7e-106 1 CL0123
Cotton_A_13041_CDS 61 155 61 156 PF00173.28 Cyt-b5 Domain 1 73 74 46.6 2.8e-12 1 No_clan
Cotton_A_05810_CDS 73 220 71 225 PF01694.22 Rhomboid Family 3 144 150 77.3 1.2e-21 1 CL0207
Cotton_A_06762_CDS 14 153 13 156 PF00056.23 Ldh_1_N Family 2 138 141 145.6 1e-42 1 CL0063
Cotton_A_11474_CDS 217 484 213 484 PF07714.17 Pkinase_Tyr Domain 6 259 259 169.5 8.1e-50 1 CL0016
Cotton_A_01942_CDS 15 98 12 99 PF03083.16 MtN3_slv Family 4 86 87 91.8 2e-26 1 CL0141
Cotton_A_01942_CDS 133 218 133 219 PF03083.16 MtN3_slv Family 1 86 87 89.0 1.6e-25 1 CL0141
Cotton_A_14687_CDS 138 208 128 237 PF13589.6 HATPase_c_3 Domain 20 95 137 38.1 1.2e-09 1 CL0025
Cotton_A_14687_CDS 346 484 346 484 PF17942.1 Morc6_S5 Family 1 139 139 201.8 4.2e-60 1 CL0329
Cotton_A_30296_CDS 96 404 96 408 PF00365.20 PFK Domain 1 280 284 134.3 5.2e-39 1 CL0240
Cotton_A_15725_CDS 35 93 34 112 PF08240.12 ADH_N Domain 2 60 109 34.1 1.9e-08 1 CL0296
Cotton_A_15725_CDS 148 279 148 281 PF00107.26 ADH_zinc_N Family 1 128 130 63.5 1.8e-17 1 CL0063
Cotton_A_20826_CDS 10 57 10 57 PF00319.18 SRF-TF Domain 1 48 48 85.0 1.7e-24 1 No_clan
Cotton_A_20826_CDS 96 172 86 173 PF01486.17 K-box Family 16 92 93 52.6 3.9e-14 1 No_clan
Cotton_A_26056_CDS 43 165 40 165 PF04852.12 DUF640 Family 4 126 126 222.1 1.7e-66 1 No_clan
Cotton_A_04576_CDS 258 284 257 284 PF01535.20 PPR Family 5 31 31 14.0 0.045 1 CL0020
Cotton_A_04576_CDS 361 379 359 384 PF01535.20 PPR Family 6 24 31 11.4 0.3 1 CL0020
Cotton_A_04576_CDS 385 431 384 433 PF13041.6 PPR_2 Repeat 2 48 50 36.0 6e-09 1 CL0020
Cotton_A_04576_CDS 488 514 488 518 PF01535.20 PPR Family 1 27 31 21.3 0.00022 1 CL0020
Cotton_A_04576_CDS 587 633 586 635 PF13041.6 PPR_2 Repeat 2 49 50 30.8 2.4e-07 1 CL0020
Cotton_A_31664_CDS 7 128 6 129 PF01775.17 Ribosomal_L18A Domain 2 120 121 184.0 8.8e-55 1 No_clan
Cotton_A_20007_CDS 1 104 1 104 PF03660.14 PHF5 Family 1 104 104 161.2 6.6e-48 1 No_clan
Cotton_A_28027_CDS 68 106 66 111 PF00646.33 F-box Domain 3 41 48 23.0 5.1e-05 1 CL0271
Cotton_A_11286_CDS 112 147 106 148 PF00468.17 Ribosomal_L34 Family 11 43 44 44.2 1.3e-11 1 No_clan
Cotton_A_16398_CDS 4 43 1 47 PF00643.24 zf-B_box Domain 5 38 42 25.8 8.7e-06 1 No_clan
Cotton_A_16398_CDS 55 94 54 99 PF00643.24 zf-B_box Domain 2 39 42 31.4 1.5e-07 1 No_clan
Cotton_A_14025_CDS 417 671 417 677 PF00069.25 Pkinase Domain 1 254 264 141.6 2.8e-41 1 CL0016
Cotton_A_06458_CDS 1 409 1 409 PF05695.12 DUF825 Family 617 1025 1486 902.5 4.2e-271 1 No_clan
Cotton_A_18426_CDS 8 134 8 134 PF02365.15 NAM Family 1 126 126 128.8 2.2e-37 1 No_clan
Cotton_A_15216_CDS 27 134 27 134 PF04398.12 DUF538 Family 1 112 112 107.1 6.5e-31 1 No_clan
Cotton_A_20489_CDS 270 423 243 437 PF00201.18 UDPGT Family 262 409 499 111.1 6.2e-32 1 CL0113
Cotton_A_34763_CDS 24 77 24 78 PF04770.12 ZF-HD_dimer Family 1 54 55 103.9 4e-30 1 No_clan
Cotton_A_08496_CDS 747 793 747 794 PF13921.6 Myb_DNA-bind_6 Domain 1 44 60 31.4 1.7e-07 1 CL0123
Cotton_A_10640_CDS 84 150 82 151 PF02560.14 Cyanate_lyase Domain 3 68 69 106.7 3.8e-31 1 No_clan
Cotton_A_01738_CDS 248 329 248 330 PF06507.13 Auxin_resp Family 1 82 83 109.2 9e-32 1 No_clan
Cotton_A_01738_CDS 622 716 590 721 PF02309.16 AUX_IAA Family 117 231 237 26.0 7.5e-06 1 CL0072
Cotton_A_21365_CDS 24 55 13 58 PF00646.33 F-box Domain 9 40 48 31.4 1.2e-07 1 CL0271
Cotton_A_21365_CDS 235 327 233 351 PF08268.12 FBA_3 Domain 3 97 128 27.9 1.8e-06 1 CL0162
Cotton_A_32505_CDS 42 77 42 78 PF03638.15 TCR Domain 1 37 38 40.4 2.7e-10 1 No_clan
Cotton_A_32505_CDS 128 163 127 164 PF03638.15 TCR Domain 2 37 38 47.3 1.8e-12 1 No_clan
Cotton_A_12930_CDS 41 79 40 80 PF08263.12 LRRNT_2 Family 2 40 41 42.5 6e-11 1 No_clan
Cotton_A_12930_CDS 428 450 428 450 PF00560.33 LRR_1 Repeat 1 23 23 9.5 1.7 1 CL0022
Cotton_A_12930_CDS 525 547 525 547 PF00560.33 LRR_1 Repeat 1 23 23 10.9 0.57 1 CL0022
Cotton_A_12930_CDS 549 608 548 608 PF13855.6 LRR_8 Repeat 2 61 61 30.6 2.1e-07 1 CL0022
Cotton_A_12930_CDS 719 957 715 1002 PF00069.25 Pkinase Domain 5 221 264 133.6 7.8e-39 1 CL0016
Cotton_A_23765_CDS 18 339 17 339 PF03405.14 FA_desaturase_2 Domain 2 326 326 507.5 1.2e-152 1 CL0044
Cotton_A_15770_CDS 64 150 63 150 PF03330.18 DPBB_1 Domain 2 83 83 63.1 2.3e-17 1 CL0199
Cotton_A_15770_CDS 161 238 161 238 PF01357.21 Pollen_allerg_1 Domain 1 80 80 80.2 8.2e-23 1 CL0159
Cotton_A_32427_CDS 217 505 204 505 PF00176.23 SNF2_N Family 52 350 350 187.1 3.5e-55 1 CL0023
Cotton_A_32427_CDS 560 668 555 669 PF00271.31 Helicase_C Family 4 110 111 52.7 4.5e-14 1 CL0023
Cotton_A_15363_CDS 114 351 104 369 PF01697.27 Glyco_transf_92 Domain 17 226 260 22.3 8.9e-05 1 CL0110
Cotton_A_29101_CDS 372 441 372 442 PF00076.22 RRM_1 Domain 1 69 70 61.7 4.3e-17 1 CL0221
Cotton_A_28947_CDS 1 348 1 349 PF03759.13 PRONE Family 3 362 363 558.8 4.1e-168 1 No_clan
Cotton_A_31447_CDS 16 314 15 317 PF00248.21 Aldo_ket_red Domain 2 290 294 236.0 5.1e-70 1 No_clan
Cotton_A_12160_CDS 33 338 33 342 PF00657.22 Lipase_GDSL Family 1 196 200 56.9 2.7e-15 1 CL0264
Cotton_A_02265_CDS 60 84 60 85 PF05678.14 VQ Motif 3 27 28 38.7 4.9e-10 1 No_clan
Cotton_A_13433_CDS 34 429 7 442 PF00067.22 p450 Domain 47 447 463 207.6 2.9e-61 1 No_clan
Cotton_A_25132_CDS 37 276 36 278 PF00141.23 peroxidase Domain 2 226 229 215.8 6.1e-64 1 CL0617
Cotton_A_31199_CDS 21 52 20 58 PF00646.33 F-box Domain 2 33 48 25.8 7.2e-06 1 CL0271
Cotton_A_31199_CDS 171 195 171 195 PF07723.13 LRR_2 Repeat 1 25 26 21.2 0.00032 1 CL0022
Cotton_A_31199_CDS 319 362 317 363 PF08387.10 FBD Family 2 45 46 47.9 9e-13 1 No_clan
Cotton_A_20217_CDS 44 142 19 153 PF00293.28 NUDIX Domain 16 120 131 40.8 2e-10 1 CL0261
Cotton_A_14811_CDS 21 58 19 60 PF00646.33 F-box Domain 9 46 48 24.4 1.9e-05 1 CL0271
Cotton_A_38462_CDS 1 336 1 336 PF06217.12 GAGA_bind Domain 1 295 295 341.3 8.9e-102 1 No_clan
Cotton_A_33086_CDS 22 77 22 87 PF01734.22 Patatin Family 1 46 204 38.1 1.7e-09 1 CL0323
Cotton_A_13480_CDS 41 383 40 386 PF11744.8 ALMT Family 2 348 469 494.5 3.1e-148 1 CL0307
Cotton_A_23038_CDS 45 388 45 398 PF00171.22 Aldedh Family 1 339 462 429.0 1.7e-128 1 CL0099
Cotton_A_29183_CDS 1 63 1 66 PF14111.6 DUF4283 Domain 71 133 145 42.7 3.7e-11 1 No_clan
Cotton_A_06912_CDS 91 118 91 119 PF08041.11 PetM Family 1 28 30 41.4 7.7e-11 1 No_clan
Cotton_A_37668_CDS 12 196 10 198 PF01145.25 Band_7 Family 3 177 178 83.3 2e-23 1 CL0433
Cotton_A_09334_CDS 27 60 25 60 PF13713.6 BRX_N Domain 6 37 37 51.8 4.8e-14 1 No_clan
Cotton_A_09334_CDS 137 191 136 191 PF08381.11 BRX Domain 2 56 56 94.3 2e-27 1 No_clan
Cotton_A_09334_CDS 311 366 311 366 PF08381.11 BRX Domain 1 56 56 98.2 1.2e-28 1 No_clan
Cotton_A_20124_CDS 78 145 78 147 PF00076.22 RRM_1 Domain 1 68 70 55.9 2.7e-15 1 CL0221
Cotton_A_20124_CDS 170 237 170 239 PF00076.22 RRM_1 Domain 1 68 70 39.4 3.8e-10 1 CL0221
Cotton_A_02933_CDS 130 231 130 232 PF02362.21 B3 Family 1 100 101 77.6 5.2e-22 1 CL0405
Cotton_A_02933_CDS 256 339 256 339 PF06507.13 Auxin_resp Family 1 83 83 116.1 6.2e-34 1 No_clan
Cotton_A_02933_CDS 763 863 740 865 PF02309.16 AUX_IAA Family 115 235 237 33.6 3.5e-08 1 CL0072
Cotton_A_14748_CDS 338 473 320 484 PF01544.18 CorA Family 151 288 292 28.8 7.2e-07 1 No_clan
Cotton_A_37474_CDS 101 144 100 144 PF13639.6 zf-RING_2 Domain 2 44 44 45.1 9.5e-12 1 CL0229
Cotton_A_04193_CDS 570 636 568 640 PF13890.6 Rab3-GTPase_cat Family 3 72 163 41.8 8e-11 1 No_clan
Cotton_A_36758_CDS 42 194 41 194 PF04043.15 PMEI Domain 2 154 154 125.1 2.9e-36 1 No_clan
Cotton_A_30130_CDS 40 490 40 502 PF00067.22 p450 Domain 1 451 463 324.7 9.2e-97 1 No_clan
Cotton_A_32365_CDS 175 292 164 294 PF13537.6 GATase_7 Domain 10 121 123 82.0 3e-23 1 CL0052
Cotton_A_32365_CDS 359 465 349 471 PF00156.27 Pribosyltran Domain 21 119 159 32.2 6.6e-08 1 CL0533
Cotton_A_18440_CDS 318 417 308 426 PF01553.21 Acyltransferase Family 12 120 135 36.2 3.9e-09 1 CL0228
Cotton_A_17215_CDS 3 90 2 90 PF14705.6 Costars Domain 2 75 76 86.5 1e-24 1 CL0123
Cotton_A_39549_CDS 54 153 53 170 PF08801.11 Nucleoporin_N Domain 2 103 434 83.2 1.5e-23 1 CL0186
Cotton_A_31225_CDS 16 111 16 117 PF00106.25 adh_short Domain 1 96 195 68.4 5.5e-19 1 CL0063
Cotton_A_19460_CDS 54 290 44 290 PF00141.23 peroxidase Domain 11 229 229 221.1 1.5e-65 1 CL0617
Cotton_A_24065_CDS 9 69 8 101 PF10270.9 MMgT Family 2 65 100 31.0 2.4e-07 1 No_clan
Cotton_A_04008_CDS 76 457 76 457 PF03514.14 GRAS Family 1 374 374 312.5 3.6e-93 1 CL0063
Cotton_A_10745_CDS 44 102 43 104 PF04083.16 Abhydro_lipase Family 2 62 64 60.1 1.1e-16 1 CL0028
Cotton_A_31399_CDS 39 61 37 61 PF12874.7 zf-met Domain 3 25 25 25.7 1e-05 1 CL0361
Cotton_A_34122_CDS 171 198 171 198 PF05678.14 VQ Motif 1 28 28 45.4 4e-12 1 No_clan
Cotton_A_30921_CDS 6 37 5 37 PF14369.6 zinc_ribbon_9 Domain 2 35 35 44.0 2e-11 1 CL0167
Cotton_A_30921_CDS 180 221 178 221 PF13639.6 zf-RING_2 Domain 3 44 44 38.8 8.7e-10 1 CL0229
Cotton_A_30921_CDS 249 330 249 335 PF06547.12 DUF1117 Family 1 82 113 102.1 2.6e-29 1 No_clan
Cotton_A_31129_CDS 248 333 244 334 PF02517.16 CPBP Family 5 91 92 73.7 1.1e-20 1 CL0472
Cotton_A_13457_CDS 20 259 20 259 PF13561.6 adh_short_C2 Domain 1 234 234 208.3 1.2e-61 1 CL0063
Cotton_A_03807_CDS 108 151 107 155 PF00847.20 AP2 Domain 2 50 54 26.7 4.8e-06 1 CL0081
Cotton_A_06649_CDS 16 39 16 39 PF01754.16 zf-A20 Family 1 24 24 46.8 1.9e-12 1 No_clan
Cotton_A_06649_CDS 113 149 111 150 PF01428.16 zf-AN1 Family 1 39 40 33.7 3e-08 1 No_clan
Cotton_A_08207_CDS 7 104 6 104 PF14368.6 LTP_2 Family 2 97 97 64.3 8.4e-18 1 CL0482
Cotton_A_23638_CDS 10 200 7 204 PF03959.13 FSH1 Domain 4 206 212 148.7 1.8e-43 1 CL0028
Cotton_A_25735_CDS 12 79 12 79 PF01722.18 BolA Family 1 76 76 73.0 1.8e-20 1 No_clan
Cotton_A_41199_CDS 31 103 30 104 PF13656.6 RNA_pol_L_2 Domain 2 74 75 91.3 2.3e-26 1 CL0509
Cotton_A_05339_CDS 4 78 1 81 PF05633.11 BPS1 Family 28 106 388 82.2 3.5e-23 1 CL0133
Cotton_A_30978_CDS 111 155 88 265 PF07819.13 PGAP1 Family 90 136 231 26.6 4.3e-06 1 CL0028
Cotton_A_33737_CDS 92 232 70 247 PF03896.16 TRAP_alpha Family 115 257 285 66.7 1.9e-18 1 No_clan
Cotton_A_23675_CDS 46 129 45 135 PF01627.23 Hpt Family 2 83 85 44.2 1.7e-11 1 No_clan
Cotton_A_35398_CDS 26 120 21 120 PF12776.7 Myb_DNA-bind_3 Domain 7 96 96 30.6 5.2e-07 1 CL0123
Cotton_A_27812_CDS 10 61 2 61 PF00155.21 Aminotran_1_2 Domain 312 363 363 30.7 1.8e-07 1 CL0061
Cotton_A_17487_CDS 125 337 124 337 PF00590.20 TP_methylase Domain 2 213 213 170.4 5.1e-50 1 No_clan
Cotton_A_29881_CDS 46 135 42 136 PF01657.17 Stress-antifung Family 6 94 95 65.8 4.2e-18 1 No_clan
Cotton_A_29881_CDS 186 239 155 240 PF01657.17 Stress-antifung Family 44 94 95 38.8 1.1e-09 1 No_clan
Cotton_A_13951_CDS 18 73 17 74 PF00403.26 HMA Domain 2 61 62 50.4 2.2e-13 1 No_clan
Cotton_A_34555_CDS 13 159 10 159 PF04535.12 DUF588 Domain 6 150 150 70.4 1.4e-19 1 CL0396
Cotton_A_36560_CDS 24 58 23 59 PF14538.6 Raptor_N Domain 110 144 147 42.9 4.6e-11 1 CL0093
Cotton_A_34682_CDS 42 88 41 88 PF08263.12 LRRNT_2 Family 2 41 41 40.2 3.1e-10 1 No_clan
Cotton_A_34682_CDS 120 141 119 141 PF00560.33 LRR_1 Repeat 2 23 23 10.7 0.68 1 CL0022
Cotton_A_34682_CDS 266 288 266 288 PF00560.33 LRR_1 Repeat 1 23 23 10.2 1 1 CL0022
Cotton_A_34682_CDS 314 373 307 373 PF13855.6 LRR_8 Repeat 2 61 61 41.3 9.5e-11 1 CL0022
Cotton_A_34682_CDS 385 444 384 445 PF13855.6 LRR_8 Repeat 2 60 61 38.0 1e-09 1 CL0022
Cotton_A_16629_CDS 26 215 25 215 PF06697.12 DUF1191 Family 2 183 183 220.1 1.9e-65 1 CL0661
Cotton_A_06663_CDS 3 36 1 44 PF00139.19 Lectin_legB Domain 205 239 249 27.8 1.7e-06 1 CL0004
Cotton_A_06663_CDS 113 262 108 274 PF00069.25 Pkinase Domain 26 171 264 102.2 3.1e-29 1 CL0016
Cotton_A_21666_CDS 7 133 3 141 PF03358.15 FMN_red Domain 18 145 155 45.4 6.6e-12 1 CL0042
Cotton_A_13581_CDS 98 275 98 276 PF14543.6 TAXi_N Domain 1 177 178 190.3 3.5e-56 1 CL0129
Cotton_A_13581_CDS 298 442 297 443 PF14541.6 TAXi_C Domain 2 160 161 100.6 7.3e-29 1 CL0129
Cotton_A_04722_CDS 41 92 40 93 PF13833.6 EF-hand_8 Domain 2 54 55 66.9 1.1e-18 1 CL0220
Cotton_A_07294_CDS 37 141 37 141 PF00168.30 C2 Domain 1 103 103 81.4 4.8e-23 1 CL0154
Cotton_A_07294_CDS 216 312 216 318 PF00168.30 C2 Domain 1 97 103 88.5 3e-25 1 CL0154
Cotton_A_08380_CDS 33 73 32 74 PF03790.13 KNOX1 Family 2 42 43 60.0 1.3e-16 1 No_clan
Cotton_A_08380_CDS 89 137 87 137 PF03791.13 KNOX2 Family 4 48 48 55.2 3.5e-15 1 No_clan
Cotton_A_08380_CDS 195 216 195 216 PF03789.13 ELK Domain 1 22 22 29.2 6.8e-07 1 No_clan
Cotton_A_08380_CDS 235 282 235 282 PF05920.11 Homeobox_KN Family 1 40 40 45.9 3.7e-12 1 CL0123
Cotton_A_34232_CDS 37 102 37 107 PF00717.23 Peptidase_S24 Domain 1 60 70 33.8 2.4e-08 1 CL0299
Cotton_A_26756_CDS 88 257 88 260 PF01512.17 Complex1_51K Family 1 148 152 157.2 2.7e-46 1 CL0105
Cotton_A_26756_CDS 284 333 283 335 PF10531.9 SLBB Domain 2 56 58 34.4 1.5e-08 1 CL0072
Cotton_A_26756_CDS 374 456 373 457 PF10589.9 NADH_4Fe-4S Domain 2 84 85 99.5 8.4e-29 1 No_clan
Cotton_A_05668_CDS 253 298 250 298 PF00010.26 HLH Domain 5 53 53 37.5 1.7e-09 1 No_clan
Cotton_A_21052_CDS 46 182 46 183 PF00179.26 UQ_con Domain 1 139 140 146.6 3.6e-43 1 CL0208
Cotton_A_02550_CDS 235 354 231 354 PF13561.6 adh_short_C2 Domain 117 234 234 114.6 5e-33 1 CL0063
Cotton_A_09791_CDS 134 166 133 167 PF08880.11 QLQ Domain 2 34 35 45.1 5.8e-12 1 No_clan
Cotton_A_09791_CDS 203 245 203 245 PF08879.10 WRC Domain 1 43 43 74.1 5e-21 1 No_clan
Cotton_A_08874_CDS 41 417 32 441 PF13520.6 AA_permease_2 Family 10 404 425 136.8 8.8e-40 1 CL0062
Cotton_A_13645_CDS 9 87 9 115 PF14226.6 DIOX_N Family 1 77 118 38.1 2.2e-09 1 CL0029
Cotton_A_13645_CDS 165 258 160 261 PF03171.20 2OG-FeII_Oxy Domain 5 98 101 61.2 1.1e-16 1 CL0029
Cotton_A_27697_CDS 267 557 238 559 PF12698.7 ABC2_membrane_3 Family 94 343 345 51.0 1.1e-13 1 CL0181
Cotton_A_27697_CDS 650 794 649 795 PF00005.27 ABC_tran Domain 2 136 137 88.3 6.3e-25 1 CL0023
Cotton_A_36324_CDS 126 322 125 329 PF06941.12 NT5C Family 2 174 180 56.1 4e-15 1 CL0137
Cotton_A_33141_CDS 6 47 4 47 PF08271.12 TF_Zn_Ribbon Domain 3 43 43 54.6 5.5e-15 1 CL0167
Cotton_A_33141_CDS 112 176 112 183 PF00382.19 TFIIB Domain 1 65 71 69.4 2.1e-19 1 CL0065
Cotton_A_33141_CDS 213 281 213 281 PF00382.19 TFIIB Domain 1 71 71 36.2 4.6e-09 1 CL0065
Cotton_A_15601_CDS 106 149 105 149 PF13639.6 zf-RING_2 Domain 2 44 44 53.6 2e-14 1 CL0229
Cotton_A_05615_CDS 50 99 50 101 PF05608.12 DUF778 Family 1 50 189 78.2 9.8e-22 1 No_clan
Cotton_A_05615_CDS 100 185 98 185 PF05608.12 DUF778 Family 93 189 189 77.4 1.8e-21 1 No_clan
Cotton_A_28183_CDS 106 385 104 387 PF00069.25 Pkinase Domain 4 260 264 146.9 7e-43 1 CL0016
Cotton_A_16789_CDS 75 110 69 111 PF00596.21 Aldolase_II Domain 150 185 186 29.2 8e-07 1 No_clan
Cotton_A_16789_CDS 162 374 161 374 PF00702.26 Hydrolase Domain 2 210 210 34.2 3e-08 1 CL0137
Cotton_A_17608_CDS 236 340 218 353 PF02536.14 mTERF Family 145 247 314 33.1 2.7e-08 1 No_clan
Cotton_A_17608_CDS 431 534 393 535 PF02536.14 mTERF Family 214 313 314 53.3 1.9e-14 1 No_clan
Cotton_A_12903_CDS 91 133 82 133 PF04145.15 Ctr Family 106 148 148 39.1 1.1e-09 1 No_clan
Cotton_A_20389_CDS 44 686 42 692 PF11145.8 DUF2921 Family 3 645 894 460.0 1.4e-137 1 No_clan
Cotton_A_33899_CDS 25 420 24 423 PF01490.18 Aa_trans Family 2 406 409 343.8 1.1e-102 1 CL0062
Cotton_A_09648_CDS 68 125 67 125 PF13855.6 LRR_8 Repeat 2 61 61 32.2 6.6e-08 1 CL0022
Cotton_A_09648_CDS 160 218 159 218 PF13855.6 LRR_8 Repeat 2 61 61 28.8 7.4e-07 1 CL0022
Cotton_A_21108_CDS 112 187 111 188 PF14709.7 DND1_DSRM Domain 2 79 80 71.4 5.6e-20 1 CL0196
Cotton_A_03650_CDS 10 74 3 89 PF05021.15 NPL4 Family 220 287 308 23.2 3.9e-05 1 CL0366
Cotton_A_37624_CDS 148 306 147 311 PF14381.6 EDR1 Family 2 155 200 158.6 1.5e-46 1 CL0125
Cotton_A_37624_CDS 322 370 317 370 PF14381.6 EDR1 Family 152 200 200 64.0 1.5e-17 1 CL0125
Cotton_A_37624_CDS 768 1019 768 1020 PF07714.17 Pkinase_Tyr Domain 1 258 259 231.4 1e-68 1 CL0016
Cotton_A_08379_CDS 86 238 81 245 PF00160.21 Pro_isomerase Domain 9 149 158 68.0 1.1e-18 1 CL0475
Cotton_A_32447_CDS 1 63 1 67 PF13968.6 DUF4220 Family 10 70 347 62.7 4e-17 1 No_clan
Cotton_A_32447_CDS 80 197 68 198 PF13968.6 DUF4220 Family 150 278 347 48.6 7.4e-13 1 No_clan
Cotton_A_15358_CDS 155 242 155 243 PF03088.16 Str_synth Family 1 88 89 103.3 5.6e-30 1 CL0186
Cotton_A_32749_CDS 14 104 14 108 PF12776.7 Myb_DNA-bind_3 Domain 1 92 96 74.2 1.3e-20 1 CL0123
Cotton_A_16983_CDS 14 87 14 87 PF07765.12 KIP1 Family 1 74 74 128.3 8.4e-38 1 No_clan
Cotton_A_03842_CDS 16 280 13 280 PF03619.16 Solute_trans_a Family 5 265 265 262.2 5.3e-78 1 No_clan
Cotton_A_12622_CDS 184 226 183 226 PF13639.6 zf-RING_2 Domain 2 44 44 51.5 9.1e-14 1 CL0229
Cotton_A_11961_CDS 10 80 9 80 PF08079.12 Ribosomal_L30_N Domain 2 72 72 86.0 1.5e-24 1 No_clan
Cotton_A_11961_CDS 85 135 85 135 PF00327.20 Ribosomal_L30 Domain 1 51 51 70.6 7.6e-20 1 No_clan
Cotton_A_34584_CDS 17 357 16 359 PF03016.15 Exostosin Family 2 298 300 279.0 4.3e-83 1 No_clan
Cotton_A_28265_CDS 49 105 49 105 PF08246.12 Inhibitor_I29 Domain 1 58 58 62.0 5.1e-17 1 No_clan
Cotton_A_28265_CDS 134 349 134 349 PF00112.23 Peptidase_C1 Domain 1 218 218 277.6 9.3e-83 1 CL0125
Cotton_A_19965_CDS 23 402 21 402 PF03547.18 Mem_trans Family 3 387 387 245.7 5.1e-73 1 CL0064
Cotton_A_35333_CDS 121 327 119 327 PF00566.18 RabGAP-TBC Family 3 215 215 188.0 1.7e-55 1 No_clan
Cotton_A_21650_CDS 62 167 62 171 PF14226.6 DIOX_N Family 1 114 118 93.6 1.4e-26 1 CL0029
Cotton_A_21650_CDS 228 322 225 324 PF03171.20 2OG-FeII_Oxy Domain 4 99 101 101.4 3.3e-29 1 CL0029
Cotton_A_14188_CDS 59 132 58 134 PF03061.22 4HBT Domain 2 77 79 31.8 1.4e-07 1 CL0050
Cotton_A_40304_CDS 11 255 1 255 PF00443.29 UCH Family 72 257 257 108.4 4.2e-31 1 CL0125
Cotton_A_18228_CDS 52 219 49 220 PF13462.6 Thioredoxin_4 Domain 14 165 166 36.3 5.8e-09 1 CL0172
Cotton_A_28906_CDS 9 145 9 146 PF00179.26 UQ_con Domain 1 139 140 164.5 1e-48 1 CL0208
Cotton_A_00520_CDS 16 90 14 91 PF06404.12 PSK Family 3 89 90 58.1 1.4e-15 1 No_clan
Cotton_A_01305_CDS 125 142 125 142 PF00098.23 zf-CCHC Domain 1 18 18 23.7 3.4e-05 1 CL0511
Cotton_A_01305_CDS 153 169 152 169 PF00098.23 zf-CCHC Domain 2 18 18 22.8 6.8e-05 1 CL0511
Cotton_A_01558_CDS 10 59 10 60 PF00010.26 HLH Domain 1 52 53 27.9 1.7e-06 1 No_clan
Cotton_A_03365_CDS 27 125 27 126 PF03195.14 LOB Family 1 98 99 131.6 1.3e-38 1 No_clan
Cotton_A_00826_CDS 1 120 1 129 PF00421.19 PSII Family 55 174 507 194.2 3.5e-57 1 No_clan
Cotton_A_00826_CDS 135 216 133 217 PF00276.20 Ribosomal_L23 Family 3 84 86 62.6 3.5e-17 1 No_clan
Cotton_A_30670_CDS 116 297 116 298 PF14543.6 TAXi_N Domain 1 177 178 157.2 5e-46 1 CL0129
Cotton_A_30670_CDS 321 472 320 473 PF14541.6 TAXi_C Domain 2 160 161 107.1 7.4e-31 1 CL0129
Cotton_A_30627_CDS 12 120 12 120 PF00255.19 GSHPx Family 1 108 108 137.3 1.3e-40 1 CL0172
Cotton_A_19871_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 49.4 3.7e-13 1 CL0123
Cotton_A_19871_CDS 67 112 67 112 PF00249.31 Myb_DNA-binding Domain 1 46 46 46.1 4.1e-12 1 CL0123
Cotton_A_01606_CDS 58 110 57 111 PF04770.12 ZF-HD_dimer Family 2 54 55 105.0 1.8e-30 1 No_clan
Cotton_A_39413_CDS 124 253 121 254 PF03004.14 Transposase_24 Family 5 141 142 73.4 2e-20 1 No_clan
Cotton_A_37268_CDS 36 75 35 75 PF08263.12 LRRNT_2 Family 2 41 41 40.4 2.6e-10 1 No_clan
Cotton_A_37268_CDS 128 189 126 189 PF13855.6 LRR_8 Repeat 3 61 61 30.9 1.7e-07 1 CL0022
Cotton_A_37268_CDS 205 263 203 263 PF13855.6 LRR_8 Repeat 3 61 61 27.2 2.4e-06 1 CL0022
Cotton_A_37268_CDS 298 314 298 315 PF13516.6 LRR_6 Repeat 1 17 24 11.8 0.2 1 CL0022
Cotton_A_37268_CDS 446 506 446 506 PF13855.6 LRR_8 Repeat 1 61 61 28.8 7.4e-07 1 CL0022
Cotton_A_37268_CDS 610 624 610 626 PF13516.6 LRR_6 Repeat 3 17 24 10.1 0.72 1 CL0022
Cotton_A_37268_CDS 842 1120 838 1120 PF07714.17 Pkinase_Tyr Domain 5 259 259 149.6 9.5e-44 1 CL0016
Cotton_A_12232_CDS 31 271 29 281 PF00139.19 Lectin_legB Domain 3 236 249 189.9 5.6e-56 1 CL0004
Cotton_A_12232_CDS 346 613 345 615 PF00069.25 Pkinase Domain 2 260 264 162.5 1.2e-47 1 CL0016
Cotton_A_04811_CDS 34 81 34 82 PF14392.6 zf-CCHC_4 Domain 1 48 49 56.0 2.3e-15 1 CL0511
Cotton_A_23137_CDS 35 86 34 87 PF14416.6 PMR5N Domain 2 52 53 79.6 1.6e-22 1 No_clan
Cotton_A_23137_CDS 88 353 88 354 PF13839.6 PC-Esterase Family 1 282 283 289.9 2.6e-86 1 CL0264
Cotton_A_22884_CDS 281 435 270 450 PF02536.14 mTERF Family 13 142 314 24.2 1.4e-05 1 No_clan
Cotton_A_22884_CDS 433 553 408 554 PF02536.14 mTERF Family 196 313 314 48.5 5.6e-13 1 No_clan
Cotton_A_26933_CDS 34 319 34 319 PF00069.25 Pkinase Domain 1 264 264 219.3 5.6e-65 1 CL0016
Cotton_A_06622_CDS 10 57 10 57 PF00319.18 SRF-TF Domain 1 48 48 89.4 7.3e-26 1 No_clan
Cotton_A_06622_CDS 82 166 68 167 PF01486.17 K-box Family 9 92 93 50.1 2.3e-13 1 No_clan
Cotton_A_10766_CDS 31 94 31 110 PF05922.16 Inhibitor_I9 Domain 1 66 82 31.3 2.4e-07 1 CL0570
Cotton_A_10766_CDS 133 583 133 605 PF00082.22 Peptidase_S8 Domain 1 285 298 155.6 1.7e-45 1 No_clan
Cotton_A_10766_CDS 657 762 657 763 PF17766.1 fn3_6 Domain 1 98 99 77.8 5.4e-22 1 CL0159
Cotton_A_19951_CDS 55 466 55 466 PF01603.20 B56 Family 1 415 415 628.0 7.3e-189 1 CL0020
Cotton_A_38736_CDS 51 229 46 230 PF00722.21 Glyco_hydro_16 Domain 6 176 177 161.9 9.8e-48 1 CL0004
Cotton_A_38736_CDS 274 309 261 309 PF06955.12 XET_C Family 11 47 47 47.3 1.3e-12 1 CL0004
Cotton_A_02826_CDS 117 150 116 154 PF00542.19 Ribosomal_L12 Domain 30 63 67 26.4 6.4e-06 1 No_clan
Cotton_A_21430_CDS 88 156 88 157 PF00076.22 RRM_1 Domain 1 69 70 56.2 2.2e-15 1 CL0221
Cotton_A_21430_CDS 180 235 176 241 PF13865.6 FoP_duplication Family 3 61 81 31.3 2.3e-07 1 No_clan
Cotton_A_04038_CDS 262 287 252 288 PF00400.32 WD40 Repeat 12 37 38 15.6 0.022 1 CL0186
Cotton_A_04338_CDS 27 128 26 133 PF05701.11 WEMBL Family 2 101 562 66.4 2.1e-18 1 No_clan
Cotton_A_04338_CDS 156 417 152 418 PF05701.11 WEMBL Family 300 562 562 166.1 1.3e-48 1 No_clan
Cotton_A_12808_CDS 29 107 29 108 PF14569.6 zf-UDP Domain 1 77 78 130.1 2.4e-38 1 CL0229
Cotton_A_12808_CDS 368 1076 368 1082 PF03552.14 Cellulose_synt Family 1 714 722 1282.3 0 1 CL0110
Cotton_A_04207_CDS 22 152 21 176 PF02535.22 Zip Family 2 125 333 90.7 9.9e-26 1 CL0184
Cotton_A_22220_CDS 71 328 70 328 PF00685.27 Sulfotransfer_1 Domain 2 267 267 209.8 5.1e-62 1 CL0023
Cotton_A_08564_CDS 92 388 92 389 PF01095.19 Pectinesterase Family 1 297 298 491.8 4.6e-148 1 CL0268
Cotton_A_05879_CDS 115 165 115 170 PF16450.5 Prot_ATP_ID_OB Domain 1 52 57 29.7 4.5e-07 1 CL0021
Cotton_A_05879_CDS 228 361 228 361 PF00004.29 AAA Domain 1 132 132 137.5 3.4e-40 1 CL0023
Cotton_A_05879_CDS 383 427 383 427 PF17862.1 AAA_lid_3 Domain 1 45 45 40.0 2.5e-10 1 CL0671
Cotton_A_17666_CDS 195 505 195 505 PF04765.13 DUF616 Family 1 314 314 489.8 3.2e-147 1 No_clan
Cotton_A_24870_CDS 39 146 38 175 PF04043.15 PMEI Domain 2 111 154 55.6 7.3e-15 1 No_clan
Cotton_A_06183_CDS 2 82 1 87 PF00232.18 Glyco_hydro_1 Domain 153 220 453 46.9 1.3e-12 1 CL0058
Cotton_A_08622_CDS 82 492 82 493 PF00450.22 Peptidase_S10 Domain 1 418 419 429.5 1.8e-128 1 CL0028
Cotton_A_12039_CDS 5 377 4 377 PF00022.19 Actin Family 2 407 407 492.1 9.8e-148 1 CL0108
Cotton_A_24627_CDS 61 90 60 90 PF01535.20 PPR Family 2 31 31 22.6 7.9e-05 1 CL0020
Cotton_A_24627_CDS 92 145 92 146 PF13041.6 PPR_2 Repeat 1 49 50 44.4 1.4e-11 1 CL0020
Cotton_A_24627_CDS 156 216 155 217 PF13812.6 PPR_3 Repeat 2 62 63 45.9 4.3e-12 1 CL0020
Cotton_A_24627_CDS 239 285 236 286 PF13812.6 PPR_3 Repeat 15 61 63 23.4 4.7e-05 1 CL0020
Cotton_A_24627_CDS 309 355 307 356 PF13041.6 PPR_2 Repeat 3 49 50 30.2 3.8e-07 1 CL0020
Cotton_A_08091_CDS 236 440 235 441 PF07724.14 AAA_2 Domain 2 170 171 151.4 2.4e-44 1 CL0023
Cotton_A_08091_CDS 447 516 447 525 PF10431.9 ClpB_D2-small Domain 1 66 81 55.9 3.4e-15 1 CL0671
Cotton_A_21649_CDS 91 531 88 532 PF02133.15 Transp_cyt_pur Family 4 438 440 330.2 1.8e-98 1 CL0062
Cotton_A_34573_CDS 84 157 72 167 PF12796.7 Ank_2 Repeat 1 75 83 29.1 1.1e-06 1 CL0465
Cotton_A_34573_CDS 169 227 158 234 PF12796.7 Ank_2 Repeat 25 78 83 33.7 4.1e-08 1 CL0465
Cotton_A_34573_CDS 235 293 225 300 PF12796.7 Ank_2 Repeat 24 74 83 49.5 4.7e-13 1 CL0465
Cotton_A_34573_CDS 306 337 305 338 PF00023.30 Ank Repeat 2 31 32 17.6 0.0039 1 CL0465
Cotton_A_34573_CDS 419 525 418 525 PF13962.6 PGG Domain 2 116 116 83.6 8.8e-24 1 No_clan
Cotton_A_03907_CDS 6 530 5 530 PF05091.12 eIF-3_zeta Family 2 520 520 660.8 1.8e-198 1 CL0236
Cotton_A_03069_CDS 35 119 35 119 PF02298.17 Cu_bind_like Domain 1 84 84 83.3 8.8e-24 1 CL0026
Cotton_A_11107_CDS 41 232 41 232 PF07800.12 DUF1644 Family 1 168 168 242.6 2.1e-72 1 CL0229
Cotton_A_14601_CDS 97 213 96 217 PF02893.20 GRAM Domain 2 109 114 62.7 2.7e-17 1 CL0266
Cotton_A_26526_CDS 21 60 20 60 PF08263.12 LRRNT_2 Family 2 41 41 32.4 8.4e-08 1 No_clan
Cotton_A_04169_CDS 13 186 8 186 PF04525.12 LOR Domain 10 187 187 93.5 1.2e-26 1 CL0395
Cotton_A_19173_CDS 25 230 22 234 PF00139.19 Lectin_legB Domain 3 206 249 208.8 8.9e-62 1 CL0004
Cotton_A_19173_CDS 319 521 319 553 PF00069.25 Pkinase Domain 1 198 264 156.8 6.4e-46 1 CL0016
Cotton_A_04070_CDS 18 115 18 116 PF03195.14 LOB Family 1 98 99 139.3 5e-41 1 No_clan
Cotton_A_13126_CDS 67 159 66 170 PF07534.16 TLD Domain 2 90 139 36.6 4.6e-09 1 No_clan
Cotton_A_23684_CDS 12 171 12 173 PF00071.22 Ras Domain 1 160 162 194.8 7.2e-58 1 CL0023
Cotton_A_17315_CDS 145 204 145 205 PF12656.7 G-patch_2 Domain 1 60 61 66.6 1.5e-18 1 CL0449
Cotton_A_17315_CDS 342 389 339 390 PF18131.1 KN17_SH3 Domain 4 51 54 38.4 1e-09 1 CL0361
Cotton_A_30470_CDS 290 381 288 381 PF18808.1 Importin_rep_4 Repeat 3 90 90 75.2 3.9e-21 1 No_clan
Cotton_A_30470_CDS 392 489 384 491 PF13646.6 HEAT_2 Family 10 86 88 33.4 4.3e-08 1 CL0020
Cotton_A_30470_CDS 982 1009 982 1011 PF02985.22 HEAT Repeat 2 29 31 23.9 2.9e-05 1 CL0020
Cotton_A_14013_CDS 27 122 25 124 PF00153.27 Mito_carr Family 4 94 97 64.9 4.9e-18 1 No_clan
Cotton_A_14013_CDS 136 226 133 227 PF00153.27 Mito_carr Family 6 96 97 64.6 5.9e-18 1 No_clan
Cotton_A_14013_CDS 231 319 229 320 PF00153.27 Mito_carr Family 3 94 97 57.6 9.1e-16 1 No_clan
Cotton_A_22050_CDS 46 98 45 98 PF14416.6 PMR5N Domain 2 53 53 82.2 2.3e-23 1 No_clan
Cotton_A_22050_CDS 100 377 99 379 PF13839.6 PC-Esterase Family 2 281 283 325.6 3.3e-97 1 CL0264
Cotton_A_14953_CDS 73 199 59 200 PF00190.22 Cupin_1 Domain 21 150 151 101.9 2.4e-29 1 CL0029
Cotton_A_18221_CDS 46 113 41 124 PF00128.24 Alpha-amylase Domain 8 76 337 32.5 6.3e-08 1 CL0058
Cotton_A_18221_CDS 356 410 354 410 PF07821.12 Alpha-amyl_C2 Domain 3 58 58 76.1 1.8e-21 1 CL0369
Cotton_A_32543_CDS 210 325 203 340 PF06414.12 Zeta_toxin Domain 11 118 199 50.8 1.2e-13 1 CL0023
Cotton_A_06313_CDS 52 503 51 531 PF03094.15 Mlo Family 2 455 479 500.5 3.7e-150 1 No_clan
Cotton_A_32085_CDS 11 297 11 299 PF00291.25 PALP Family 1 292 294 226.6 4.3e-67 1 CL0063
Cotton_A_05291_CDS 143 419 143 444 PF01532.20 Glyco_hydro_47 Domain 1 269 458 267.1 2.9e-79 1 CL0059
Cotton_A_11502_CDS 241 324 237 325 PF00564.24 PB1 Domain 6 83 84 58.2 5.8e-16 1 CL0072
Cotton_A_11502_CDS 1126 1387 1124 1387 PF07714.17 Pkinase_Tyr Domain 3 259 259 197.9 1.8e-58 1 CL0016
Cotton_A_26477_CDS 181 258 181 261 PF00063.21 Myosin_head Domain 1 80 677 91.7 3.3e-26 1 CL0023
Cotton_A_16032_CDS 98 241 98 246 PF01214.18 CK_II_beta Domain 1 142 182 204.5 1.2e-60 1 No_clan
Cotton_A_33668_CDS 36 128 35 128 PF01657.17 Stress-antifung Family 2 95 95 43.8 3.1e-11 1 No_clan
Cotton_A_33668_CDS 149 236 142 237 PF01657.17 Stress-antifung Family 10 94 95 39.1 8.7e-10 1 No_clan
Cotton_A_33668_CDS 321 594 318 594 PF07714.17 Pkinase_Tyr Domain 4 259 259 157.5 3.7e-46 1 CL0016
Cotton_A_14848_CDS 2 101 2 104 PF03195.14 LOB Family 1 95 99 82.7 2.2e-23 1 No_clan
Cotton_A_19105_CDS 169 212 169 214 PF12799.7 LRR_4 Repeat 1 42 44 28.1 1.9e-06 1 CL0022
Cotton_A_19105_CDS 221 280 220 280 PF13855.6 LRR_8 Repeat 2 61 61 50.0 1.9e-13 1 CL0022
Cotton_A_32852_CDS 45 99 45 100 PF14416.6 PMR5N Domain 1 52 53 77.6 6.4e-22 1 No_clan
Cotton_A_32852_CDS 101 388 101 389 PF13839.6 PC-Esterase Family 1 282 283 283.9 1.7e-84 1 CL0264
Cotton_A_17537_CDS 30 124 30 124 PF13837.6 Myb_DNA-bind_4 Domain 1 90 90 91.2 3.9e-26 1 CL0123
Cotton_A_26011_CDS 63 126 62 126 PF00226.31 DnaJ Domain 2 63 63 74.2 6.6e-21 1 CL0392
Cotton_A_06293_CDS 131 175 131 175 PF13639.6 zf-RING_2 Domain 1 44 44 47.0 2.4e-12 1 CL0229
Cotton_A_35385_CDS 1 332 1 332 PF03254.13 XG_FTase Family 140 478 478 535.4 1.2e-160 1 No_clan
Cotton_A_06661_CDS 26 266 25 270 PF00139.19 Lectin_legB Domain 2 245 249 241.0 1.4e-71 1 CL0004
Cotton_A_06661_CDS 340 606 339 610 PF00069.25 Pkinase Domain 2 260 264 172.4 1.1e-50 1 CL0016
Cotton_A_23540_CDS 24 99 22 138 PF13947.6 GUB_WAK_bind Domain 3 75 106 47.0 3.6e-12 1 No_clan
Cotton_A_09610_CDS 103 157 102 159 PF04844.13 Ovate Family 2 56 58 72.0 2.8e-20 1 No_clan
Cotton_A_23559_CDS 35 470 35 483 PF00067.22 p450 Domain 1 436 463 306.8 2.5e-91 1 No_clan
Cotton_A_23559_CDS 482 841 482 842 PF12819.7 Malectin_like Domain 1 335 336 142.2 2.2e-41 1 CL0202
Cotton_A_23559_CDS 928 1135 923 1198 PF07714.17 Pkinase_Tyr Domain 7 206 259 140.0 7.9e-41 1 CL0016
Cotton_A_09111_CDS 290 646 289 647 PF03081.15 Exo70 Family 2 375 376 280.9 1.6e-83 1 CL0295
Cotton_A_34954_CDS 24 340 24 342 PF00332.18 Glyco_hydro_17 Domain 1 311 313 289.7 3.4e-86 1 CL0058
Cotton_A_22666_CDS 24 52 20 53 PF02798.20 GST_N Domain 47 75 76 33.4 4.1e-08 1 CL0172
Cotton_A_20777_CDS 180 223 180 223 PF13639.6 zf-RING_2 Domain 1 44 44 53.9 1.7e-14 1 CL0229
Cotton_A_03163_CDS 13 46 13 47 PF08880.11 QLQ Domain 1 34 35 43.2 2.3e-11 1 No_clan
Cotton_A_03163_CDS 75 117 75 117 PF08879.10 WRC Domain 1 43 43 69.1 1.9e-19 1 No_clan
Cotton_A_33588_CDS 36 115 36 117 PF16845.5 SQAPI Domain 1 81 83 122.1 8.8e-36 1 CL0121
Cotton_A_11018_CDS 132 219 132 219 PF00736.19 EF1_GNE Domain 1 90 90 108.2 1.8e-31 1 No_clan
Cotton_A_36091_CDS 28 333 9 333 PF00225.23 Kinesin Domain 25 333 333 360.2 8.5e-108 1 CL0023
Cotton_A_36879_CDS 28 124 26 126 PF00153.27 Mito_carr Family 4 95 97 68.6 3.3e-19 1 No_clan
Cotton_A_36879_CDS 137 226 134 228 PF00153.27 Mito_carr Family 6 95 97 68.6 3.3e-19 1 No_clan
Cotton_A_05314_CDS 456 613 455 614 PF13177.6 DNA_pol3_delta2 Domain 2 162 163 86.2 2.1e-24 1 CL0023
Cotton_A_05314_CDS 671 788 666 797 PF12169.8 DNA_pol3_gamma3 Family 6 128 143 26.6 4.7e-06 1 CL0604
Cotton_A_07543_CDS 298 557 297 558 PF01803.16 LIM_bind Family 2 240 241 194.6 1.8e-57 1 No_clan
Cotton_A_11624_CDS 171 847 171 847 PF05664.11 DUF810 Family 1 686 686 660.5 3.4e-198 1 No_clan
Cotton_A_11146_CDS 92 207 64 210 PF16213.5 DCB Family 76 174 178 28.2 1.3e-06 1 No_clan
Cotton_A_11146_CDS 233 393 232 393 PF12783.7 Sec7_N Domain 2 158 158 101.3 4.9e-29 1 No_clan
Cotton_A_11146_CDS 478 663 478 663 PF01369.20 Sec7 Domain 1 183 183 228.0 6.4e-68 1 No_clan
Cotton_A_14938_CDS 141 189 139 190 PF00847.20 AP2 Domain 3 53 54 45.3 7.5e-12 1 CL0081
Cotton_A_08260_CDS 12 106 12 106 PF13966.6 zf-RVT Domain 1 85 85 49.9 3.9e-13 1 No_clan
Cotton_A_11365_CDS 6 134 6 134 PF02365.15 NAM Family 1 126 126 132.7 1.3e-38 1 No_clan
Cotton_A_17943_CDS 130 337 130 337 PF02683.15 DsbD Family 1 213 213 154.5 3.5e-45 1 CL0292
Cotton_A_08048_CDS 130 160 130 160 PF01535.20 PPR Family 1 31 31 10.9 0.45 1 CL0020
Cotton_A_08048_CDS 170 194 165 195 PF01535.20 PPR Family 6 30 31 15.9 0.011 1 CL0020
Cotton_A_08048_CDS 196 220 196 224 PF01535.20 PPR Family 1 25 31 16.8 0.006 1 CL0020
Cotton_A_08048_CDS 270 294 267 295 PF01535.20 PPR Family 5 29 31 17.6 0.0031 1 CL0020
Cotton_A_08048_CDS 295 341 294 343 PF13041.6 PPR_2 Repeat 2 48 50 43.2 3.3e-11 1 CL0020
Cotton_A_10588_CDS 3 111 1 111 PF00271.31 Helicase_C Family 7 111 111 58.2 8.8e-16 1 CL0023
Cotton_A_10588_CDS 205 304 205 304 PF14619.6 SnAC Domain 1 77 77 81.4 5.3e-23 1 No_clan
Cotton_A_28961_CDS 73 301 73 302 PF07859.13 Abhydrolase_3 Domain 1 210 211 188.1 1.8e-55 1 CL0028
Cotton_A_35843_CDS 97 500 97 503 PF03092.16 BT1 Family 1 521 524 253.5 2.9e-75 1 CL0015
Cotton_A_01625_CDS 8 147 2 148 PF06708.11 DUF1195 Family 7 146 147 257.8 2.2e-77 1 No_clan
Cotton_A_28267_CDS 89 347 89 347 PF00069.25 Pkinase Domain 1 264 264 240.1 2.5e-71 1 CL0016
Cotton_A_28267_CDS 395 455 358 456 PF13499.6 EF-hand_7 Domain 4 70 71 44.6 1.4e-11 1 CL0220
Cotton_A_28267_CDS 465 526 464 526 PF13499.6 EF-hand_7 Domain 2 71 71 40.8 2.2e-10 1 CL0220
Cotton_A_03867_CDS 632 790 632 790 PF13925.6 Katanin_con80 Domain 1 160 160 177.7 1.7e-52 1 No_clan
Cotton_A_14715_CDS 5 43 4 45 PF12937.7 F-box-like Domain 7 46 48 31.4 1.3e-07 1 CL0271
Cotton_A_21701_CDS 32 90 31 90 PF02704.14 GASA Family 2 60 60 80.6 6.8e-23 1 No_clan
Cotton_A_07578_CDS 83 239 83 253 PF03372.23 Exo_endo_phos Domain 1 167 233 55.9 4.3e-15 1 CL0530
Cotton_A_04732_CDS 9 80 9 80 PF12609.8 DUF3774 Family 1 74 74 58.7 8.8e-16 1 No_clan
Cotton_A_11861_CDS 21 59 20 59 PF08263.12 LRRNT_2 Family 2 41 41 30.0 4.6e-07 1 No_clan
Cotton_A_11861_CDS 427 591 413 594 PF00069.25 Pkinase Domain 102 259 264 65.2 5.9e-18 1 CL0016
Cotton_A_11861_CDS 635 710 635 711 PF08511.11 COQ9 Domain 1 76 77 75.9 1.5e-21 1 No_clan
Cotton_A_37252_CDS 16 365 14 365 PF00225.23 Kinesin Domain 3 333 333 349.5 1.5e-104 1 CL0023
Cotton_A_29644_CDS 82 318 66 320 PF13360.6 PQQ_2 Domain 28 235 237 54.1 1.6e-14 1 CL0186
Cotton_A_29644_CDS 441 519 437 529 PF13360.6 PQQ_2 Domain 5 83 237 37.0 2.6e-09 1 CL0186
Cotton_A_10905_CDS 5 377 4 377 PF00022.19 Actin Family 2 407 407 491.1 2e-147 1 CL0108
Cotton_A_22428_CDS 61 85 61 88 PF05678.14 VQ Motif 1 25 28 40.9 1e-10 1 No_clan
Cotton_A_16070_CDS 331 599 330 599 PF13934.6 ELYS Family 2 220 220 179.3 1e-52 1 No_clan
Cotton_A_11831_CDS 84 123 84 124 PF13414.6 TPR_11 Repeat 1 40 42 29.4 4.6e-07 1 CL0020
Cotton_A_11831_CDS 187 304 186 310 PF12569.8 NARP1 Family 2 112 515 93.4 1.5e-26 1 CL0020
Cotton_A_11831_CDS 492 694 490 695 PF12569.8 NARP1 Family 304 514 515 243.9 3.7e-72 1 CL0020
Cotton_A_00644_CDS 18 141 18 141 PF00241.20 Cofilin_ADF Domain 1 121 121 122.1 1.1e-35 1 CL0092
Cotton_A_17786_CDS 116 144 115 144 PF01535.20 PPR Family 3 31 31 17.2 0.0044 1 CL0020
Cotton_A_17786_CDS 146 194 146 195 PF13041.6 PPR_2 Repeat 1 49 50 41.1 1.5e-10 1 CL0020
Cotton_A_17786_CDS 213 241 212 243 PF12854.7 PPR_1 Repeat 2 30 34 27.1 2.4e-06 1 CL0020
Cotton_A_17786_CDS 248 294 247 295 PF13041.6 PPR_2 Repeat 3 49 50 47.4 1.7e-12 1 CL0020
Cotton_A_17786_CDS 312 345 312 345 PF12854.7 PPR_1 Repeat 1 34 34 40.7 1.4e-10 1 CL0020
Cotton_A_17786_CDS 352 400 351 400 PF13041.6 PPR_2 Repeat 2 50 50 50.1 2.3e-13 1 CL0020
Cotton_A_17786_CDS 417 450 417 450 PF12854.7 PPR_1 Repeat 1 34 34 31.2 1.3e-07 1 CL0020
Cotton_A_17786_CDS 456 505 456 505 PF13041.6 PPR_2 Repeat 1 50 50 54.8 8.1e-15 1 CL0020
Cotton_A_17786_CDS 527 575 526 575 PF13041.6 PPR_2 Repeat 2 50 50 62.6 2.9e-17 1 CL0020
Cotton_A_17786_CDS 597 644 597 646 PF13041.6 PPR_2 Repeat 1 48 50 31.4 1.6e-07 1 CL0020
Cotton_A_37310_CDS 3 76 3 77 PF00240.23 ubiquitin Domain 1 71 72 71.3 4.2e-20 1 CL0072
Cotton_A_37310_CDS 156 191 152 191 PF00627.31 UBA Domain 5 37 37 52.5 3.2e-14 1 CL0214
Cotton_A_37310_CDS 259 314 259 315 PF09280.11 XPC-binding Domain 1 56 57 83.9 4.8e-24 1 No_clan
Cotton_A_37310_CDS 340 375 339 375 PF00627.31 UBA Domain 2 37 37 47.2 1.5e-12 1 CL0214
Cotton_A_17413_CDS 3 428 1 428 PF00022.19 Actin Family 5 407 407 334.9 5.3e-100 1 CL0108
Cotton_A_26956_CDS 39 77 37 78 PF08263.12 LRRNT_2 Family 3 38 41 37.3 2.5e-09 1 No_clan
Cotton_A_37663_CDS 62 118 55 120 PF01145.25 Band_7 Family 106 162 178 29.2 7.9e-07 1 CL0433
Cotton_A_04160_CDS 40 136 40 138 PF03195.14 LOB Family 1 97 99 139.2 5.2e-41 1 No_clan
Cotton_A_00383_CDS 30 54 29 55 PF13912.6 zf-C2H2_6 Domain 2 26 27 25.2 1.2e-05 1 CL0361
Cotton_A_15177_CDS 23 93 22 101 PF02724.14 CDC45 Family 2 70 636 52.4 2.7e-14 1 No_clan
Cotton_A_15177_CDS 110 203 100 211 PF02724.14 CDC45 Family 171 267 636 71.8 3.7e-20 1 No_clan
Cotton_A_32166_CDS 37 250 37 250 PF00314.17 Thaumatin Domain 1 214 214 273.8 9.1e-82 1 CL0293
Cotton_A_30447_CDS 196 252 188 253 PF03763.13 Remorin_C Family 50 106 107 40.9 1.5e-10 1 No_clan
Cotton_A_02696_CDS 42 59 39 59 PF14608.6 zf-CCCH_2 Domain 3 17 18 11.1 0.43 1 CL0537
Cotton_A_02696_CDS 100 125 100 125 PF00642.24 zf-CCCH Family 2 27 27 26.9 3.3e-06 1 CL0537
Cotton_A_02696_CDS 169 232 168 232 PF00013.29 KH_1 Domain 2 66 66 45.0 6.9e-12 1 CL0007
Cotton_A_02696_CDS 260 284 260 285 PF00642.24 zf-CCCH Family 1 26 27 37.8 1.2e-09 1 CL0537
Cotton_A_07787_CDS 17 177 17 178 PF00071.22 Ras Domain 1 161 162 206.0 2.5e-61 1 CL0023
Cotton_A_16734_CDS 109 344 109 344 PF01063.19 Aminotran_4 Domain 1 223 223 122.5 2.3e-35 1 No_clan
Cotton_A_37761_CDS 16 46 11 53 PF00646.33 F-box Domain 9 39 48 21.7 0.00014 1 CL0271
Cotton_A_09681_CDS 186 270 186 271 PF00439.25 Bromodomain Domain 1 83 84 68.7 3.4e-19 1 No_clan
Cotton_A_09681_CDS 338 400 337 401 PF17035.5 BET Domain 2 63 64 63.7 1.3e-17 1 CL0665
Cotton_A_05523_CDS 31 102 29 104 PF07524.13 Bromo_TP Domain 3 74 77 71.4 4.7e-20 1 CL0012
Cotton_A_05523_CDS 166 214 166 214 PF10406.9 TAF8_C Domain 1 49 49 74.7 6.4e-21 1 No_clan
Cotton_A_04262_CDS 258 292 258 293 PF00320.27 GATA Domain 1 35 36 57.4 7.9e-16 1 CL0167
Cotton_A_06289_CDS 62 911 34 912 PF11145.8 DUF2921 Family 37 893 894 779.6 3.5e-234 1 No_clan
Cotton_A_27389_CDS 47 136 45 138 PF13905.6 Thioredoxin_8 Domain 3 93 95 81.9 3.2e-23 1 CL0172
Cotton_A_27389_CDS 205 298 205 299 PF13905.6 Thioredoxin_8 Domain 1 94 95 93.3 8.5e-27 1 CL0172
Cotton_A_27389_CDS 345 386 344 386 PF03107.16 C1_2 Domain 2 47 47 28.3 1.6e-06 1 CL0006
Cotton_A_34529_CDS 190 327 190 328 PF07534.16 TLD Domain 1 138 139 102.4 2.3e-29 1 No_clan
Cotton_A_00214_CDS 115 607 114 607 PF02990.16 EMP70 Family 2 519 519 563.4 4.7e-169 1 No_clan
Cotton_A_05312_CDS 3 141 3 141 PF05687.13 BES1_N Family 1 152 152 222.8 2.4e-66 1 No_clan
Cotton_A_16412_CDS 29 104 7 104 PF02519.14 Auxin_inducible Family 17 90 90 98.9 1.4e-28 1 No_clan
Cotton_A_17340_CDS 64 151 64 152 PF03330.18 DPBB_1 Domain 1 82 83 79.3 1.9e-22 1 CL0199
Cotton_A_17340_CDS 163 240 163 240 PF01357.21 Pollen_allerg_1 Domain 1 80 80 93.0 8.6e-27 1 CL0159
Cotton_A_03204_CDS 87 235 85 240 PF12483.8 GIDE Family 2 154 158 123.2 6e-36 1 No_clan
Cotton_A_20612_CDS 81 125 81 125 PF02671.21 PAH Repeat 1 45 45 53.1 2.6e-14 1 No_clan
Cotton_A_20612_CDS 166 209 165 209 PF02671.21 PAH Repeat 2 45 45 68.7 3.3e-19 1 No_clan
Cotton_A_20612_CDS 360 403 359 403 PF02671.21 PAH Repeat 2 45 45 45.8 5e-12 1 No_clan
Cotton_A_20612_CDS 472 564 472 566 PF08295.12 Sin3_corepress Domain 1 95 98 118.2 1.2e-34 1 No_clan
Cotton_A_20612_CDS 1089 1337 1089 1337 PF16879.5 Sin3a_C Family 1 286 286 175.0 2.7e-51 1 No_clan
Cotton_A_27256_CDS 272 377 266 378 PF00534.20 Glycos_transf_1 Family 83 171 172 51.7 7.2e-14 1 CL0113
Cotton_A_41205_CDS 52 171 45 171 PF00134.23 Cyclin_N Domain 8 127 127 75.5 3e-21 1 CL0065
Cotton_A_41205_CDS 173 285 173 294 PF02984.19 Cyclin_C Domain 1 107 119 33.8 3e-08 1 CL0065
Cotton_A_34145_CDS 43 315 20 316 PF04142.15 Nuc_sug_transp Family 33 314 315 114.2 6.8e-33 1 CL0184
Cotton_A_02102_CDS 1 59 1 59 PF04783.12 DUF630 Family 1 59 59 85.2 2.5e-24 1 No_clan
Cotton_A_02102_CDS 388 701 387 703 PF04782.12 DUF632 Family 2 308 310 360.7 6.7e-108 1 No_clan
Cotton_A_19000_CDS 10 98 10 143 PF18052.1 Rx_N Domain 1 84 93 77.9 5.4e-22 1 No_clan
Cotton_A_19000_CDS 175 394 173 413 PF00931.22 NB-ARC Domain 3 222 252 180.9 2.5e-53 1 CL0023
Cotton_A_34783_CDS 55 172 55 172 PF00188.26 CAP Domain 1 126 126 72.0 7.6e-20 1 CL0659
Cotton_A_03926_CDS 25 64 24 64 PF08263.12 LRRNT_2 Family 2 41 41 52.5 4.6e-14 1 No_clan
Cotton_A_03926_CDS 116 155 115 159 PF12799.7 LRR_4 Repeat 2 39 44 32.7 6.7e-08 1 CL0022
Cotton_A_03926_CDS 685 871 683 875 PF00069.25 Pkinase Domain 3 167 264 106.8 1.2e-30 1 CL0016
Cotton_A_10641_CDS 55 806 54 806 PF05664.11 DUF810 Family 2 686 686 881.8 3.7e-265 1 No_clan
Cotton_A_00211_CDS 23 94 11 108 PF02362.21 B3 Family 15 84 101 30.2 3e-07 1 CL0405
Cotton_A_18720_CDS 14 57 11 58 PF02978.19 SRP_SPB Domain 56 98 99 24.3 3.6e-05 1 CL0123
Cotton_A_21677_CDS 6 162 1 162 PF01397.21 Terpene_synth Domain 24 191 192 156.9 4.7e-46 1 No_clan
Cotton_A_21677_CDS 194 459 194 459 PF03936.16 Terpene_synth_C Domain 1 267 267 393.9 3.3e-118 1 CL0613
Cotton_A_00922_CDS 13 73 13 75 PF00076.22 RRM_1 Domain 1 68 70 54.7 6.7e-15 1 CL0221
Cotton_A_00922_CDS 103 118 102 119 PF00098.23 zf-CCHC Domain 2 17 18 27.6 2.1e-06 1 CL0511
Cotton_A_00922_CDS 124 140 124 141 PF00098.23 zf-CCHC Domain 1 17 18 22.6 7.8e-05 1 CL0511
Cotton_A_12804_CDS 84 445 83 446 PF01566.18 Nramp Family 2 357 358 392.0 2.3e-117 1 CL0062
Cotton_A_40371_CDS 160 312 158 317 PF00270.29 DEAD Domain 3 170 176 72.7 3e-20 1 CL0023
Cotton_A_40371_CDS 1007 1172 1004 1174 PF08148.12 DSHCT Domain 4 162 164 112.4 1.7e-32 1 No_clan
Cotton_A_07555_CDS 22 359 21 363 PF03016.15 Exostosin Family 2 298 300 260.1 2.3e-77 1 No_clan
Cotton_A_01576_CDS 1 72 1 75 PF00274.19 Glycolytic Domain 19 95 349 64.2 8.6e-18 1 CL0035
Cotton_A_02073_CDS 101 278 101 279 PF00719.19 Pyrophosphatase Domain 1 159 160 157.5 2.3e-46 1 No_clan
Cotton_A_29153_CDS 26 316 25 316 PF00069.25 Pkinase Domain 2 264 264 227.2 2.2e-67 1 CL0016
Cotton_A_16655_CDS 30 114 29 115 PF05922.16 Inhibitor_I9 Domain 2 81 82 45.6 8.5e-12 1 CL0570
Cotton_A_16655_CDS 138 577 138 598 PF00082.22 Peptidase_S8 Domain 1 285 298 167.7 3.4e-49 1 No_clan
Cotton_A_16655_CDS 650 754 650 755 PF17766.1 fn3_6 Domain 1 98 99 96.0 1.2e-27 1 CL0159
Cotton_A_34546_CDS 155 236 155 248 PF02362.21 B3 Family 1 86 101 51.0 1e-13 1 CL0405
Cotton_A_03878_CDS 43 97 42 100 PF02701.15 zf-Dof Family 2 56 59 108.9 9.8e-32 1 No_clan
Cotton_A_16609_CDS 13 113 5 113 PF11837.8 DUF3357 Family 10 109 109 69.1 4e-19 1 No_clan
Cotton_A_30497_CDS 36 84 34 84 PF13637.6 Ank_4 Repeat 6 55 55 33.7 3.7e-08 1 CL0465
Cotton_A_30497_CDS 172 268 164 269 PF00651.31 BTB Domain 11 110 111 57.9 1e-15 1 CL0033
Cotton_A_30497_CDS 341 447 334 451 PF00651.31 BTB Domain 8 107 111 55.4 6.1e-15 1 CL0033
Cotton_A_12363_CDS 40 361 40 363 PF16913.5 PUNUT Family 1 320 322 341.7 4.2e-102 1 CL0184
Cotton_A_15111_CDS 571 775 570 775 PF12036.8 DUF3522 Family 2 188 188 186.6 5.4e-55 1 CL0192
Cotton_A_32026_CDS 12 557 12 561 PF03321.13 GH3 Family 1 523 527 637.2 2.4e-191 1 CL0378
Cotton_A_35808_CDS 182 230 182 231 PF13041.6 PPR_2 Repeat 1 49 50 48.9 5.3e-13 1 CL0020
Cotton_A_06747_CDS 210 334 209 335 PF03109.16 ABC1 Family 2 118 119 108.3 2.6e-31 1 CL0016
Cotton_A_22497_CDS 13 105 12 112 PF03226.14 Yippee-Mis18 Domain 2 90 105 60.7 1.3e-16 1 CL0080
Cotton_A_35265_CDS 6 78 6 80 PF04564.15 U-box Domain 1 71 73 68.9 3.1e-19 1 CL0229
Cotton_A_24285_CDS 122 449 121 460 PF00899.21 ThiF Domain 2 219 244 54.5 1.1e-14 1 CL0063
Cotton_A_24285_CDS 251 322 251 322 PF16190.5 E1_FCCH Domain 1 71 71 98.5 1.8e-28 1 No_clan
Cotton_A_24285_CDS 323 392 323 392 PF16191.5 E1_4HB Domain 1 70 70 75.8 2.3e-21 1 No_clan
Cotton_A_24285_CDS 474 974 474 979 PF00899.21 ThiF Domain 1 239 244 250.6 1.4e-74 1 CL0063
Cotton_A_24285_CDS 661 914 661 914 PF10585.9 UBA_e1_thiolCys Domain 1 252 252 283.5 1.9e-84 1 No_clan
Cotton_A_24285_CDS 985 1074 985 1074 PF09358.10 E1_UFD Domain 1 93 93 74.7 7.2e-21 1 No_clan
Cotton_A_34093_CDS 1 157 1 157 PF14009.6 DUF4228 Family 1 179 179 92.8 3.2e-26 1 No_clan
Cotton_A_34304_CDS 8 379 2 379 PF02458.15 Transferase Family 55 434 434 248.4 1.1e-73 1 CL0149
Cotton_A_34704_CDS 259 380 259 380 PF12576.8 DUF3754 Family 1 137 137 80.8 8.7e-23 1 No_clan
Cotton_A_14531_CDS 121 141 121 141 PF00612.27 IQ Motif 1 21 21 24.4 1.4e-05 1 CL0220
Cotton_A_14531_CDS 147 161 144 163 PF00612.27 IQ Motif 5 19 21 18.9 0.00087 1 CL0220
Cotton_A_14531_CDS 270 347 260 355 PF13178.6 DUF4005 Family 1 64 93 54.3 1.6e-14 1 No_clan
Cotton_A_37767_CDS 39 144 38 145 PF04398.12 DUF538 Family 2 111 112 125.1 1.6e-36 1 No_clan
Cotton_A_32425_CDS 129 219 129 220 PF02362.21 B3 Family 1 100 101 56.5 1.9e-15 1 CL0405
Cotton_A_34070_CDS 89 490 89 498 PF01373.17 Glyco_hydro_14 Domain 1 394 402 237.9 1.9e-70 1 CL0058
Cotton_A_09959_CDS 83 187 83 188 PF04424.13 MINDY_DUB Family 1 96 117 109.2 1.1e-31 1 No_clan
Cotton_A_20025_CDS 47 176 47 176 PF03952.16 Enolase_N Domain 1 131 131 186.5 2e-55 1 CL0227
Cotton_A_20025_CDS 185 471 184 473 PF00113.22 Enolase_C Domain 2 292 296 387.8 3.1e-116 1 CL0256
Cotton_A_15543_CDS 20 90 20 90 PF11976.8 Rad60-SLD Family 1 72 72 86.3 9.1e-25 1 CL0072
Cotton_A_33113_CDS 78 270 78 271 PF00300.22 His_Phos_1 Domain 1 193 194 199.9 3.2e-59 1 CL0071
Cotton_A_33978_CDS 364 492 364 493 PF00004.29 AAA Domain 1 131 132 120.7 5.2e-35 1 CL0023
Cotton_A_16975_CDS 123 158 123 163 PF04927.12 SMP Family 1 36 59 32.8 7.3e-08 1 No_clan
Cotton_A_23903_CDS 26 145 24 146 PF01417.20 ENTH Domain 4 124 125 154.8 1e-45 1 CL0009
Cotton_A_16621_CDS 109 222 109 222 PF03479.15 DUF296 Domain 1 107 107 100.8 5e-29 1 CL0615
Cotton_A_37665_CDS 24 118 24 118 PF00338.22 Ribosomal_S10 Family 1 98 98 97.7 3.5e-28 1 No_clan
Cotton_A_21261_CDS 19 56 4 61 PF03492.15 Methyltransf_7 Family 48 85 334 33.6 2.4e-08 1 CL0063
Cotton_A_21261_CDS 65 108 59 110 PF03492.15 Methyltransf_7 Family 138 181 334 57.5 1.3e-15 1 CL0063
Cotton_A_21261_CDS 109 233 108 233 PF03492.15 Methyltransf_7 Family 217 334 334 87.6 8.6e-25 1 CL0063
Cotton_A_05710_CDS 30 57 30 57 PF08790.11 zf-LYAR Domain 1 28 28 45.8 4e-12 1 CL0361
Cotton_A_05710_CDS 95 119 95 119 PF12874.7 zf-met Domain 1 25 25 24.8 2e-05 1 CL0361
Cotton_A_28432_CDS 33 103 33 103 PF00076.22 RRM_1 Domain 1 70 70 63.8 9.3e-18 1 CL0221
Cotton_A_28432_CDS 121 189 121 190 PF00076.22 RRM_1 Domain 1 69 70 77.8 4e-22 1 CL0221
Cotton_A_28432_CDS 212 280 212 281 PF00076.22 RRM_1 Domain 1 69 70 82.5 1.4e-23 1 CL0221
Cotton_A_28432_CDS 315 383 315 384 PF00076.22 RRM_1 Domain 1 69 70 69.8 1.2e-19 1 CL0221
Cotton_A_28432_CDS 558 624 557 624 PF00658.18 PABP Family 2 68 68 93.3 7.6e-27 1 No_clan
Cotton_A_16159_CDS 130 232 109 241 PF01704.18 UDPGP Family 51 140 413 36.1 2.9e-09 1 CL0110
Cotton_A_18260_CDS 17 211 15 211 PF00349.21 Hexokinase_1 Domain 3 199 199 212.8 4.4e-63 1 CL0108
Cotton_A_18260_CDS 218 456 217 457 PF03727.16 Hexokinase_2 Domain 2 239 240 260.7 1.1e-77 1 CL0108
Cotton_A_18260_CDS 459 591 452 592 PF01217.20 Clat_adaptor_s Domain 9 141 142 165.1 9.1e-49 1 CL0212
Cotton_A_03313_CDS 1 90 1 91 PF00153.27 Mito_carr Family 11 96 97 78.5 2.7e-22 1 No_clan
Cotton_A_03313_CDS 97 192 96 195 PF00153.27 Mito_carr Family 2 94 97 85.7 1.6e-24 1 No_clan
Cotton_A_03313_CDS 199 283 197 289 PF00153.27 Mito_carr Family 4 91 97 58.5 4.8e-16 1 No_clan
Cotton_A_36337_CDS 55 222 53 222 PF05042.13 Caleosin Family 3 170 170 242.4 2.4e-72 1 CL0220
Cotton_A_39275_CDS 54 126 52 128 PF00153.27 Mito_carr Family 6 95 97 41.1 1.2e-10 1 No_clan
Cotton_A_39275_CDS 132 212 130 217 PF00153.27 Mito_carr Family 3 90 97 58.9 3.4e-16 1 No_clan
Cotton_A_39275_CDS 226 312 221 314 PF00153.27 Mito_carr Family 6 95 97 84.8 2.9e-24 1 No_clan
Cotton_A_38543_CDS 144 206 144 206 PF04483.12 DUF565 Family 1 60 60 78.1 5.5e-22 1 No_clan
Cotton_A_37515_CDS 183 226 182 227 PF13639.6 zf-RING_2 Domain 2 43 44 35.7 8.1e-09 1 CL0229
Cotton_A_06241_CDS 207 414 207 415 PF02786.17 CPSase_L_D2 Domain 1 210 211 242.4 3.4e-72 1 CL0179
Cotton_A_06241_CDS 507 626 505 626 PF02787.19 CPSase_L_D3 Domain 3 122 122 140.0 4.6e-41 1 CL0123
Cotton_A_06241_CDS 765 967 765 970 PF02786.17 CPSase_L_D2 Domain 1 208 211 131.5 2.9e-38 1 CL0179
Cotton_A_06241_CDS 1051 1136 1049 1136 PF02142.22 MGS Domain 3 95 95 66.8 1.5e-18 1 No_clan
Cotton_A_13235_CDS 178 291 178 293 PF13474.6 SnoaL_3 Domain 1 119 121 90.5 9.4e-26 1 CL0051
Cotton_A_28198_CDS 54 77 54 79 PF01535.20 PPR Family 4 27 31 11.0 0.42 1 CL0020
Cotton_A_28198_CDS 79 129 79 129 PF13041.6 PPR_2 Repeat 1 50 50 34.5 1.8e-08 1 CL0020
Cotton_A_28198_CDS 181 229 181 230 PF13041.6 PPR_2 Repeat 1 49 50 43.3 3.1e-11 1 CL0020
Cotton_A_28198_CDS 257 283 254 284 PF01535.20 PPR Family 4 30 31 10.5 0.59 1 CL0020
Cotton_A_28198_CDS 285 315 285 315 PF01535.20 PPR Family 1 31 31 20.6 0.00035 1 CL0020
Cotton_A_28198_CDS 383 432 383 433 PF13041.6 PPR_2 Repeat 1 49 50 31.1 2e-07 1 CL0020
Cotton_A_28198_CDS 459 483 458 485 PF01535.20 PPR Family 2 26 31 11.5 0.28 1 CL0020
Cotton_A_08347_CDS 21 156 20 156 PF13302.7 Acetyltransf_3 Domain 2 138 138 92.8 2.9e-26 1 CL0257
Cotton_A_19941_CDS 1 67 1 67 PF11820.8 DUF3339 Family 1 67 67 119.6 4.8e-35 1 No_clan
Cotton_A_13843_CDS 103 279 95 279 PF00544.19 Pec_lyase_C Domain 37 211 211 67.8 9.4e-19 1 CL0268
Cotton_A_13316_CDS 33 126 28 136 PF01575.19 MaoC_dehydratas Domain 13 109 123 67.7 6.7e-19 1 CL0050
Cotton_A_14136_CDS 54 234 53 234 PF00227.26 Proteasome Domain 3 190 190 164.1 2.5e-48 1 CL0052
Cotton_A_35099_CDS 28 78 28 79 PF05047.16 L51_S25_CI-B8 Domain 1 51 52 45.6 4.9e-12 1 CL0172
Cotton_A_12428_CDS 2 39 1 47 PF00646.33 F-box Domain 3 39 48 15.6 0.011 1 CL0271
Cotton_A_12428_CDS 205 243 204 251 PF00646.33 F-box Domain 2 39 48 17.8 0.0022 1 CL0271
Cotton_A_12428_CDS 481 547 481 547 PF03478.18 DUF295 Domain 1 55 55 45.7 3.4e-12 1 No_clan
Cotton_A_27717_CDS 264 283 264 286 PF02493.20 MORN Repeat 1 20 23 18.8 0.0011 1 CL0251
Cotton_A_27717_CDS 287 309 287 309 PF02493.20 MORN Repeat 1 23 23 25.0 1.1e-05 1 CL0251
Cotton_A_27717_CDS 310 332 310 332 PF02493.20 MORN Repeat 1 23 23 25.4 8.4e-06 1 CL0251
Cotton_A_27717_CDS 333 355 333 355 PF02493.20 MORN Repeat 1 23 23 21.4 0.00016 1 CL0251
Cotton_A_27717_CDS 356 378 356 378 PF02493.20 MORN Repeat 1 23 23 26.3 4.3e-06 1 CL0251
Cotton_A_27717_CDS 379 401 379 401 PF02493.20 MORN Repeat 1 23 23 25.6 7.1e-06 1 CL0251
Cotton_A_27717_CDS 402 423 402 424 PF02493.20 MORN Repeat 1 22 23 24.3 1.9e-05 1 CL0251
Cotton_A_02508_CDS 33 146 32 147 PF07732.15 Cu-oxidase_3 Domain 2 117 119 133.2 4.4e-39 1 CL0026
Cotton_A_02508_CDS 159 300 158 301 PF00394.22 Cu-oxidase Domain 2 158 159 127.6 4.4e-37 1 CL0026
Cotton_A_02508_CDS 381 520 380 522 PF07731.14 Cu-oxidase_2 Domain 2 135 137 90.4 7.9e-26 1 CL0026
Cotton_A_30605_CDS 322 576 322 576 PF07891.12 DUF1666 Family 1 246 246 323.8 7.4e-97 1 No_clan
Cotton_A_03251_CDS 178 296 178 341 PF00305.19 Lipoxygenase Domain 1 117 674 103.1 1.4e-29 1 No_clan
Cotton_A_03251_CDS 326 444 309 455 PF00305.19 Lipoxygenase Domain 97 212 674 37.2 1.2e-09 1 No_clan
Cotton_A_03251_CDS 723 944 713 944 PF00305.19 Lipoxygenase Domain 452 674 674 264.4 2.1e-78 1 No_clan
Cotton_A_04080_CDS 73 138 73 138 PF00191.20 Annexin Family 1 66 66 35.0 1.1e-08 1 No_clan
Cotton_A_04080_CDS 158 213 156 221 PF00191.20 Annexin Family 3 54 66 38.9 6.6e-10 1 No_clan
Cotton_A_19764_CDS 38 220 36 221 PF00722.21 Glyco_hydro_16 Domain 3 176 177 186.3 3.2e-55 1 CL0004
Cotton_A_19764_CDS 258 294 249 294 PF06955.12 XET_C Family 10 47 47 48.5 5.4e-13 1 CL0004
Cotton_A_26837_CDS 8 57 8 57 PF13041.6 PPR_2 Repeat 1 50 50 60.4 1.4e-16 1 CL0020
Cotton_A_26837_CDS 79 127 78 127 PF13041.6 PPR_2 Repeat 2 50 50 65.3 4.1e-18 1 CL0020
Cotton_A_26837_CDS 144 176 144 177 PF12854.7 PPR_1 Repeat 1 33 34 37.3 1.6e-09 1 CL0020
Cotton_A_26837_CDS 183 231 183 231 PF13041.6 PPR_2 Repeat 1 49 50 62.0 4.4e-17 1 CL0020
Cotton_A_26837_CDS 250 281 249 282 PF12854.7 PPR_1 Repeat 2 33 34 42.1 5.2e-11 1 CL0020
Cotton_A_26837_CDS 289 337 288 337 PF13041.6 PPR_2 Repeat 2 50 50 58.9 4.2e-16 1 CL0020
Cotton_A_26837_CDS 358 403 358 405 PF13041.6 PPR_2 Repeat 1 46 50 36.5 4.2e-09 1 CL0020
Cotton_A_30700_CDS 17 250 13 250 PF03649.13 UPF0014 Family 5 242 242 228.2 8.9e-68 1 No_clan
Cotton_A_32985_CDS 90 363 89 364 PF00483.23 NTP_transferase Family 2 247 248 227.3 2.2e-67 1 CL0110
Cotton_A_13056_CDS 881 1176 880 1176 PF00069.25 Pkinase Domain 2 264 264 197.5 2.5e-58 1 CL0016
Cotton_A_08010_CDS 15 98 12 99 PF03083.16 MtN3_slv Family 4 86 87 91.1 3.4e-26 1 CL0141
Cotton_A_08010_CDS 134 218 133 219 PF03083.16 MtN3_slv Family 2 86 87 91.1 3.4e-26 1 CL0141
Cotton_A_09064_CDS 352 502 351 506 PF02453.17 Reticulon Family 2 151 157 81.4 6.5e-23 1 CL0484
Cotton_A_13763_CDS 103 392 103 392 PF08392.12 FAE1_CUT1_RppA Family 1 290 290 485.8 4.2e-146 1 CL0046
Cotton_A_13763_CDS 408 489 405 490 PF08541.10 ACP_syn_III_C Domain 11 89 90 40.3 2.7e-10 1 CL0046
Cotton_A_02280_CDS 32 203 32 203 PF01397.21 Terpene_synth Domain 1 192 192 198.0 1.2e-58 1 No_clan
Cotton_A_02280_CDS 234 499 234 499 PF03936.16 Terpene_synth_C Domain 1 267 267 354.0 4.9e-106 1 CL0613
Cotton_A_25304_CDS 26 346 26 347 PF00332.18 Glyco_hydro_17 Domain 1 312 313 356.9 1.2e-106 1 CL0058
Cotton_A_25304_CDS 373 443 372 444 PF07983.13 X8 Domain 2 75 76 57.8 1.3e-15 1 No_clan
Cotton_A_16442_CDS 97 164 97 170 PF13417.6 GST_N_3 Domain 1 70 75 52.9 3.6e-14 1 CL0172
Cotton_A_12216_CDS 60 105 60 105 PF12906.7 RINGv Domain 1 48 48 46.7 2.5e-12 1 CL0229
Cotton_A_12216_CDS 111 226 111 227 PF12428.8 DUF3675 Family 1 118 119 160.4 2.3e-47 1 No_clan
Cotton_A_12184_CDS 26 61 25 61 PF08263.12 LRRNT_2 Family 2 41 41 33.4 4e-08 1 No_clan
Cotton_A_12184_CDS 112 171 111 171 PF13855.6 LRR_8 Repeat 2 61 61 27.1 2.7e-06 1 CL0022
Cotton_A_12184_CDS 347 607 344 610 PF00069.25 Pkinase Domain 4 259 264 124.6 4.5e-36 1 CL0016
Cotton_A_28390_CDS 8 54 1 70 PF13456.6 RVT_3 Domain 34 80 124 23.1 5e-05 1 CL0219
Cotton_A_03915_CDS 39 95 38 96 PF02701.15 zf-Dof Family 2 58 59 115.0 1.2e-33 1 No_clan
Cotton_A_20592_CDS 87 369 86 369 PF00696.28 AA_kinase Family 2 241 241 164.2 3.8e-48 1 No_clan
Cotton_A_02034_CDS 4 246 4 247 PF12697.7 Abhydrolase_6 Domain 1 218 220 77.2 2.7e-21 1 CL0028
Cotton_A_27764_CDS 44 64 43 65 PF01535.20 PPR Family 4 24 31 12.9 0.1 1 CL0020
Cotton_A_27764_CDS 139 167 138 168 PF01535.20 PPR Family 2 30 31 18.0 0.0024 1 CL0020
Cotton_A_27764_CDS 214 241 212 242 PF01535.20 PPR Family 3 30 31 12.6 0.13 1 CL0020
Cotton_A_27764_CDS 243 269 243 271 PF01535.20 PPR Family 1 27 31 33.5 2.7e-08 1 CL0020
Cotton_A_27764_CDS 344 391 343 392 PF13041.6 PPR_2 Repeat 2 49 50 41.4 1.2e-10 1 CL0020
Cotton_A_27764_CDS 419 443 417 445 PF01535.20 PPR Family 3 27 31 14.7 0.027 1 CL0020
Cotton_A_27764_CDS 518 641 517 641 PF14432.6 DYW_deaminase Family 2 127 127 132.6 7.1e-39 1 CL0109
Cotton_A_21058_CDS 1 86 1 90 PF12776.7 Myb_DNA-bind_3 Domain 6 92 96 66.0 4.4e-18 1 CL0123
Cotton_A_21058_CDS 346 363 345 364 PF00612.27 IQ Motif 2 19 21 23.5 2.8e-05 1 CL0220
Cotton_A_21946_CDS 15 153 15 153 PF05512.11 AWPM-19 Family 1 140 142 205.9 2.7e-61 1 No_clan
Cotton_A_33970_CDS 30 87 7 95 PF02519.14 Auxin_inducible Family 20 76 90 63.0 2.2e-17 1 No_clan
Cotton_A_04973_CDS 96 387 96 388 PF07887.11 Calmodulin_bind Family 1 291 292 428.8 9.7e-129 1 No_clan
Cotton_A_12042_CDS 59 105 59 105 PF00249.31 Myb_DNA-binding Domain 1 46 46 54.8 7.9e-15 1 CL0123
Cotton_A_12042_CDS 111 157 111 157 PF00249.31 Myb_DNA-binding Domain 1 46 46 64.0 1e-17 1 CL0123
Cotton_A_12042_CDS 163 205 163 207 PF00249.31 Myb_DNA-binding Domain 1 43 46 55.4 5.2e-15 1 CL0123
Cotton_A_28980_CDS 65 125 65 135 PF05347.15 Complex1_LYR Family 1 56 59 48.3 7.4e-13 1 CL0491
Cotton_A_25594_CDS 285 377 265 377 PF01039.22 Carboxyl_trans Family 16 111 494 38.6 5.1e-10 1 CL0127
Cotton_A_11397_CDS 81 125 81 125 PF02671.21 PAH Repeat 1 45 45 48.2 8.7e-13 1 No_clan
Cotton_A_11397_CDS 165 209 165 209 PF02671.21 PAH Repeat 1 45 45 65.3 4e-18 1 No_clan
Cotton_A_11397_CDS 361 404 360 404 PF02671.21 PAH Repeat 2 45 45 37.0 2.7e-09 1 No_clan
Cotton_A_11397_CDS 473 564 473 567 PF08295.12 Sin3_corepress Domain 1 94 98 118.3 1.1e-34 1 No_clan
Cotton_A_11397_CDS 1096 1333 1096 1341 PF16879.5 Sin3a_C Family 1 275 286 164.4 4.7e-48 1 No_clan
Cotton_A_34022_CDS 85 246 85 247 PF04387.14 PTPLA Family 1 163 164 206.5 2e-61 1 No_clan
Cotton_A_02185_CDS 2 272 2 272 PF06418.14 CTP_synth_N Domain 1 265 265 410.4 2.8e-123 1 CL0023
Cotton_A_02185_CDS 309 544 308 545 PF00117.28 GATase Domain 2 189 190 202.2 6.5e-60 1 CL0014
Cotton_A_29855_CDS 29 399 29 400 PF12819.7 Malectin_like Domain 1 335 336 165.7 1.5e-48 1 CL0202
Cotton_A_29855_CDS 518 782 513 782 PF07714.17 Pkinase_Tyr Domain 6 259 259 154.4 3.4e-45 1 CL0016
Cotton_A_03862_CDS 162 286 161 287 PF03109.16 ABC1 Family 2 118 119 107.3 5.1e-31 1 CL0016
Cotton_A_03292_CDS 74 126 72 128 PF00170.21 bZIP_1 Family 5 57 64 50.0 2.3e-13 1 CL0018
Cotton_A_37225_CDS 6 83 2 85 PF00656.22 Peptidase_C14 Domain 173 246 248 42.0 1e-10 1 CL0093
Cotton_A_33593_CDS 4 41 3 47 PF00646.33 F-box Domain 5 42 48 38.0 1e-09 1 CL0271
Cotton_A_18026_CDS 441 520 429 524 PF11360.8 DUF3110 Family 11 79 84 25.3 1.3e-05 1 No_clan
Cotton_A_09688_CDS 36 221 36 222 PF00406.22 ADK Domain 1 150 151 199.4 3.2e-59 1 CL0023
Cotton_A_09688_CDS 158 193 158 193 PF05191.14 ADK_lid Domain 1 36 36 63.0 1.7e-17 1 No_clan
Cotton_A_16961_CDS 33 119 33 119 PF02298.17 Cu_bind_like Domain 1 84 84 93.0 8.5e-27 1 CL0026
Cotton_A_20210_CDS 22 79 21 84 PF00538.19 Linker_histone Domain 2 60 74 36.6 4.4e-09 1 CL0123
Cotton_A_20210_CDS 95 103 95 107 PF02178.19 AT_hook Motif 1 9 13 7.3 5.2 1 No_clan
Cotton_A_20210_CDS 117 125 117 129 PF02178.19 AT_hook Motif 1 9 13 9.1 1.4 1 No_clan
Cotton_A_20210_CDS 141 152 141 153 PF02178.19 AT_hook Motif 1 12 13 10.5 0.46 1 No_clan
Cotton_A_20210_CDS 166 174 166 175 PF02178.19 AT_hook Motif 1 9 13 10.1 0.63 1 No_clan
Cotton_A_05430_CDS 6 90 6 92 PF06888.12 Put_Phosphatase Family 1 82 234 77.0 1.4e-21 1 CL0137
Cotton_A_06886_CDS 88 209 88 209 PF00380.19 Ribosomal_S9 Family 1 121 121 141.8 1.4e-41 1 CL0329
Cotton_A_28363_CDS 126 237 126 238 PF03479.15 DUF296 Domain 1 105 107 89.0 2.4e-25 1 CL0615
Cotton_A_22403_CDS 526 763 526 763 PF12490.8 BCAS3 Family 1 246 246 238.1 1e-70 1 No_clan
Cotton_A_22403_CDS 1059 1137 1059 1147 PF01627.23 Hpt Family 1 78 85 40.4 2.7e-10 1 No_clan
Cotton_A_16965_CDS 106 132 106 134 PF08799.11 PRP4 Domain 1 27 29 47.2 1.1e-12 1 No_clan
Cotton_A_16965_CDS 232 373 231 373 PF02840.15 Prp18 Family 2 143 143 206.3 1.9e-61 1 No_clan
Cotton_A_22176_CDS 5 141 5 142 PF00179.26 UQ_con Domain 1 139 140 172.9 2.7e-51 1 CL0208
Cotton_A_33635_CDS 16 176 16 177 PF00071.22 Ras Domain 1 161 162 203.6 1.4e-60 1 CL0023
Cotton_A_28837_CDS 170 250 163 270 PF13676.6 TIR_2 Domain 10 96 118 29.0 1.3e-06 1 CL0173
Cotton_A_02002_CDS 505 570 504 570 PF00512.25 HisKA Domain 2 67 67 55.9 3.3e-15 1 CL0025
Cotton_A_02002_CDS 617 768 617 769 PF02518.26 HATPase_c Domain 1 111 112 81.8 5e-23 1 CL0025
Cotton_A_02002_CDS 1089 1226 1089 1230 PF00072.24 Response_reg Domain 1 108 112 66.2 2.7e-18 1 CL0304
Cotton_A_16663_CDS 22 67 5 67 PF00428.19 Ribosomal_60s Family 45 88 88 34.7 2.1e-08 1 No_clan
Cotton_A_07730_CDS 1 60 1 60 PF08069.12 Ribosomal_S13_N Domain 1 60 60 109.3 7.1e-32 1 No_clan
Cotton_A_07730_CDS 74 145 70 148 PF00312.22 Ribosomal_S15 Domain 4 77 81 55.7 4.2e-15 1 CL0600
Cotton_A_32106_CDS 216 241 206 241 PF00400.32 WD40 Repeat 13 38 38 13.1 0.14 1 CL0186
Cotton_A_32106_CDS 252 284 246 284 PF00400.32 WD40 Repeat 8 38 38 21.2 0.00037 1 CL0186
Cotton_A_32106_CDS 296 330 292 330 PF00400.32 WD40 Repeat 5 38 38 15.4 0.026 1 CL0186
Cotton_A_32106_CDS 369 412 368 412 PF00400.32 WD40 Repeat 2 38 38 15.0 0.035 1 CL0186
Cotton_A_32106_CDS 418 450 416 454 PF00400.32 WD40 Repeat 3 34 38 19.2 0.0017 1 CL0186
Cotton_A_05912_CDS 28 73 27 73 PF08263.12 LRRNT_2 Family 2 41 41 34.6 1.7e-08 1 No_clan
Cotton_A_05912_CDS 101 158 100 160 PF13855.6 LRR_8 Repeat 2 59 61 27.4 2e-06 1 CL0022
Cotton_A_05912_CDS 173 231 172 232 PF13855.6 LRR_8 Repeat 2 60 61 32.9 3.9e-08 1 CL0022
Cotton_A_05912_CDS 412 472 412 472 PF13855.6 LRR_8 Repeat 1 61 61 27.7 1.7e-06 1 CL0022
Cotton_A_05912_CDS 533 592 532 592 PF13855.6 LRR_8 Repeat 2 61 61 34.6 1.1e-08 1 CL0022
Cotton_A_05912_CDS 711 982 709 984 PF00069.25 Pkinase Domain 3 259 264 163.9 4.5e-48 1 CL0016
Cotton_A_02143_CDS 1 231 1 231 PF04889.12 Cwf_Cwc_15 Family 1 247 247 263.6 1.9e-78 1 No_clan
Cotton_A_26458_CDS 27 88 26 88 PF00226.31 DnaJ Domain 2 63 63 98.9 1.3e-28 1 CL0392
Cotton_A_26458_CDS 137 328 136 328 PF01556.18 DnaJ_C Domain 2 148 148 120.1 7.9e-35 1 No_clan
Cotton_A_33761_CDS 7 128 6 129 PF01775.17 Ribosomal_L18A Domain 2 120 121 184.3 7.1e-55 1 No_clan
Cotton_A_38059_CDS 54 95 54 95 PF01476.20 LysM Domain 1 43 44 23.9 3.3e-05 1 CL0187
Cotton_A_21756_CDS 631 792 629 796 PF00924.18 MS_channel Family 3 165 206 57.9 1e-15 1 No_clan
Cotton_A_22782_CDS 14 74 7 75 PF00004.29 AAA Domain 73 131 132 43.9 3e-11 1 CL0023
Cotton_A_02285_CDS 159 296 159 296 PF07526.11 POX Domain 1 136 136 169.6 5.1e-50 1 No_clan
Cotton_A_02285_CDS 363 402 363 402 PF05920.11 Homeobox_KN Family 1 40 40 63.8 9.4e-18 1 CL0123
Cotton_A_34660_CDS 7 47 6 47 PF18511.1 F-box_5 Domain 2 42 42 72.5 1.5e-20 1 CL0271
Cotton_A_34660_CDS 66 112 66 112 PF18791.1 Transp_inhibit Family 1 47 47 88.2 1.8e-25 1 No_clan
Cotton_A_34660_CDS 289 310 288 311 PF13516.6 LRR_6 Repeat 2 23 24 10.3 0.6 1 CL0022
Cotton_A_21049_CDS 35 154 32 155 PF00394.22 Cu-oxidase Domain 4 119 159 120.6 6.7e-35 1 CL0026
Cotton_A_20499_CDS 2 67 2 68 PF00035.26 dsrm Domain 1 66 67 56.3 4e-15 1 CL0196
Cotton_A_20499_CDS 93 158 93 158 PF00035.26 dsrm Domain 1 67 67 52.6 5.7e-14 1 CL0196
Cotton_A_34353_CDS 52 164 51 166 PF06417.12 DUF1077 Family 2 116 118 130.6 2.6e-38 1 No_clan
Cotton_A_04742_CDS 75 308 75 308 PF01946.17 Thi4 Family 1 235 235 372.9 4.9e-112 1 CL0063
Cotton_A_22424_CDS 254 303 254 303 PF07797.14 DUF1639 Family 1 50 50 83.4 8e-24 1 No_clan
Cotton_A_37446_CDS 23 361 19 361 PF05625.11 PAXNEB Domain 5 371 371 269.1 6.3e-80 1 CL0023
Cotton_A_31027_CDS 147 205 119 206 PF00011.21 HSP20 Family 44 101 102 35.7 7.2e-09 1 CL0190
Cotton_A_01395_CDS 20 249 19 257 PF05368.13 NmrA Family 2 227 233 164.3 3.3e-48 1 CL0063
Cotton_A_13832_CDS 91 168 91 169 PF07244.15 POTRA Domain 1 79 80 30.0 5.9e-07 1 CL0191
Cotton_A_13832_CDS 198 529 198 537 PF01103.23 Bac_surface_Ag Family 1 314 324 107.8 7.6e-31 1 CL0193
Cotton_A_07454_CDS 34 293 33 293 PF05910.12 DUF868 Family 2 279 279 284.2 1.3e-84 1 No_clan
Cotton_A_12052_CDS 108 164 108 165 PF03106.15 WRKY Domain 1 58 59 82.3 2.1e-23 1 CL0274
Cotton_A_12052_CDS 500 622 498 631 PF00004.29 AAA Domain 3 122 132 102.0 3.2e-29 1 CL0023
Cotton_A_12052_CDS 683 814 682 818 PF01434.18 Peptidase_M41 Domain 43 183 191 118.0 4.3e-34 1 CL0126
Cotton_A_27572_CDS 9 271 8 271 PF05116.13 S6PP Family 2 247 247 303.1 1.5e-90 1 CL0137
Cotton_A_27572_CDS 272 404 272 404 PF08472.10 S6PP_C Family 1 133 133 192.3 2.8e-57 1 No_clan
Cotton_A_26525_CDS 10 187 2 189 PF00069.25 Pkinase Domain 93 260 264 91.1 7.1e-26 1 CL0016
Cotton_A_26398_CDS 257 372 253 373 PF00892.20 EamA Family 26 136 137 32.3 9.6e-08 1 CL0184
Cotton_A_12997_CDS 34 53 33 54 PF18044.1 zf-CCCH_4 Domain 2 21 22 26.9 3e-06 1 CL0537
Cotton_A_12997_CDS 208 265 208 267 PF00097.25 zf-C3HC4 Domain 1 41 41 29.4 5.2e-07 1 CL0229
Cotton_A_14461_CDS 12 139 10 145 PF10358.9 NT-C2 Family 3 137 146 57.4 1.3e-15 1 CL0154
Cotton_A_17630_CDS 1 33 1 54 PF07714.17 Pkinase_Tyr Domain 172 205 259 26.3 4e-06 1 CL0016
Cotton_A_09239_CDS 29 91 28 92 PF13499.6 EF-hand_7 Domain 2 70 71 58.6 6.4e-16 1 CL0220
Cotton_A_09239_CDS 101 165 101 165 PF13499.6 EF-hand_7 Domain 1 71 71 54.5 1.2e-14 1 CL0220
Cotton_A_28777_CDS 87 364 87 365 PF00291.25 PALP Family 1 293 294 201.2 2.3e-59 1 CL0063
Cotton_A_05747_CDS 37 103 37 103 PF03810.19 IBN_N Family 1 74 74 48.9 4.5e-13 1 CL0020
Cotton_A_05747_CDS 115 269 114 269 PF08389.12 Xpo1 Family 2 149 149 122.8 1.2e-35 1 CL0020
Cotton_A_05747_CDS 348 383 347 383 PF18777.1 CRM1_repeat Repeat 2 37 37 61.3 4.4e-17 1 No_clan
Cotton_A_05747_CDS 420 487 420 487 PF18784.1 CRM1_repeat_2 Repeat 1 68 68 103.6 3.2e-30 1 No_clan
Cotton_A_05747_CDS 501 550 500 550 PF18787.1 CRM1_repeat_3 Repeat 2 51 51 94.2 3.7e-27 1 No_clan
Cotton_A_05747_CDS 724 1045 724 1046 PF08767.11 CRM1_C Family 1 320 321 420.2 5.2e-126 1 CL0020
Cotton_A_23337_CDS 65 436 51 448 PF00201.18 UDPGT Family 48 408 499 88.3 4.8e-25 1 CL0113
Cotton_A_41164_CDS 93 173 84 179 PF00067.22 p450 Domain 31 109 463 32.0 5.3e-08 1 No_clan
Cotton_A_31716_CDS 28 262 24 262 PF13561.6 adh_short_C2 Domain 3 234 234 199.2 7.1e-59 1 CL0063
Cotton_A_00239_CDS 26 145 26 146 PF14226.6 DIOX_N Family 1 117 118 106.0 2e-30 1 CL0029
Cotton_A_00239_CDS 193 291 190 291 PF03171.20 2OG-FeII_Oxy Domain 4 101 101 94.0 6.3e-27 1 CL0029
Cotton_A_18805_CDS 213 539 213 540 PF00225.23 Kinesin Domain 1 332 333 307.5 9.1e-92 1 CL0023
Cotton_A_10180_CDS 102 172 102 172 PF00076.22 RRM_1 Domain 1 70 70 70.9 5.8e-20 1 CL0221
Cotton_A_10180_CDS 182 244 182 251 PF00076.22 RRM_1 Domain 1 60 70 28.5 1e-06 1 CL0221
Cotton_A_10180_CDS 276 345 276 346 PF00076.22 RRM_1 Domain 1 69 70 61.1 6.8e-17 1 CL0221
Cotton_A_27254_CDS 13 155 7 155 PF09349.10 OHCU_decarbox Domain 14 155 155 104.5 7.5e-30 1 No_clan
Cotton_A_27254_CDS 213 331 213 331 PF00576.21 Transthyretin Domain 1 110 110 107.5 5.6e-31 1 CL0287
Cotton_A_11044_CDS 32 336 31 337 PF01301.19 Glyco_hydro_35 Domain 2 315 316 401.2 3.9e-120 1 CL0058
Cotton_A_11044_CDS 344 415 344 415 PF17834.1 GHD Domain 1 72 72 93.7 5.1e-27 1 CL0369
Cotton_A_11044_CDS 767 844 767 844 PF02140.18 Gal_Lectin Domain 1 80 80 68.4 5.2e-19 1 No_clan
Cotton_A_09915_CDS 34 119 34 120 PF00067.22 p450 Domain 1 90 463 51.0 9.4e-14 1 No_clan
Cotton_A_35597_CDS 117 402 116 403 PF01148.20 CTP_transf_1 Family 2 265 266 214.0 3.3e-63 1 CL0234
Cotton_A_23045_CDS 11 158 8 159 PF14215.6 bHLH-MYC_N Family 5 173 175 64.7 1.2e-17 1 CL0161
Cotton_A_23045_CDS 287 330 282 330 PF00010.26 HLH Domain 7 53 53 39.1 5.2e-10 1 No_clan
Cotton_A_40386_CDS 39 171 38 172 PF03018.14 Dirigent Family 2 147 148 101.7 3.1e-29 1 CL0650
Cotton_A_23975_CDS 21 70 21 84 PF05758.12 Ycf1 Family 1 50 945 71.5 3.7e-20 1 No_clan
Cotton_A_17469_CDS 157 324 151 328 PF00664.23 ABC_membrane Family 102 270 274 33.9 2.6e-08 1 CL0241
Cotton_A_17469_CDS 393 541 393 541 PF00005.27 ABC_tran Domain 1 137 137 101.7 4.5e-29 1 CL0023
Cotton_A_13438_CDS 491 642 490 655 PF00069.25 Pkinase Domain 2 150 264 123.5 9.6e-36 1 CL0016
Cotton_A_13438_CDS 720 823 704 823 PF00069.25 Pkinase Domain 154 264 264 73.4 1.8e-20 1 CL0016
Cotton_A_19527_CDS 152 199 147 200 PF12678.7 zf-rbx1 Domain 7 54 55 46.0 4.9e-12 1 CL0229
Cotton_A_27478_CDS 182 268 181 269 PF13813.6 MBOAT_2 Family 2 82 83 56.1 3.3e-15 1 CL0517
Cotton_A_14547_CDS 6 127 5 129 PF00410.19 Ribosomal_S8 Domain 3 125 127 73.8 1.2e-20 1 No_clan
Cotton_A_16846_CDS 144 196 143 196 PF11250.8 FAF Family 2 54 54 72.9 1.8e-20 1 No_clan
Cotton_A_17828_CDS 45 111 45 112 PF08606.11 Prp19 Domain 1 67 68 108.3 1.3e-31 1 No_clan
Cotton_A_17828_CDS 268 303 266 303 PF00400.32 WD40 Repeat 3 37 38 29.4 9.6e-07 1 CL0186
Cotton_A_17828_CDS 400 434 397 434 PF00400.32 WD40 Repeat 4 38 38 19.6 0.0012 1 CL0186
Cotton_A_17828_CDS 485 523 484 523 PF00400.32 WD40 Repeat 2 37 38 16.9 0.0085 1 CL0186
Cotton_A_00208_CDS 26 146 26 146 PF14226.6 DIOX_N Family 1 118 118 100.1 1.3e-28 1 CL0029
Cotton_A_00208_CDS 194 291 191 291 PF03171.20 2OG-FeII_Oxy Domain 5 101 101 91.7 3.2e-26 1 CL0029
Cotton_A_26972_CDS 1 116 1 116 PF16719.5 SAWADEE Domain 27 141 141 104.1 6e-30 1 CL0049
Cotton_A_21629_CDS 26 264 26 264 PF13561.6 adh_short_C2 Domain 1 234 234 233.3 2.6e-69 1 CL0063
Cotton_A_37124_CDS 235 288 234 289 PF00395.20 SLH Family 2 44 45 24.8 1.6e-05 1 No_clan
Cotton_A_15631_CDS 80 302 80 303 PF07859.13 Abhydrolase_3 Domain 1 210 211 152.0 1.9e-44 1 CL0028
Cotton_A_03445_CDS 141 513 139 513 PF03514.14 GRAS Family 3 374 374 137.5 5.2e-40 1 CL0063
Cotton_A_18074_CDS 36 114 34 114 PF02298.17 Cu_bind_like Domain 3 84 84 69.4 2e-19 1 CL0026
Cotton_A_07865_CDS 26 266 26 273 PF01370.21 Epimerase Family 1 232 241 98.3 4.5e-28 1 CL0063
Cotton_A_04000_CDS 131 233 130 235 PF03168.13 LEA_2 Domain 2 99 101 44.9 1.3e-11 1 CL0159
Cotton_A_07380_CDS 12 69 11 77 PF00067.22 p450 Domain 382 439 463 38.3 6.9e-10 1 No_clan
Cotton_A_19256_CDS 21 100 21 101 PF03810.19 IBN_N Family 1 73 74 50.3 1.7e-13 1 CL0020
Cotton_A_19256_CDS 379 435 379 435 PF13513.6 HEAT_EZ Repeat 1 55 55 37.0 3.3e-09 1 CL0020
Cotton_A_32005_CDS 32 111 32 112 PF13774.6 Longin Domain 1 83 84 82.3 1.8e-23 1 No_clan
Cotton_A_32005_CDS 129 215 127 215 PF00957.21 Synaptobrevin Family 3 89 89 113.0 4.1e-33 1 CL0445
Cotton_A_04534_CDS 15 151 9 155 PF09835.9 DUF2062 Family 8 143 148 47.8 1.3e-12 1 No_clan
Cotton_A_10279_CDS 7 65 3 67 PF13499.6 EF-hand_7 Domain 4 68 71 33.4 4.6e-08 1 CL0220
Cotton_A_22915_CDS 37 110 11 112 PF02519.14 Auxin_inducible Family 17 88 90 89.8 9.4e-26 1 No_clan
Cotton_A_09355_CDS 78 131 78 131 PF17181.4 EPF Family 1 53 53 74.3 5.4e-21 1 No_clan
Cotton_A_12471_CDS 1 145 1 145 PF01554.18 MatE Family 17 161 161 121.3 2.8e-35 1 CL0222
Cotton_A_12471_CDS 207 369 207 370 PF01554.18 MatE Family 1 160 161 130.2 5.3e-38 1 CL0222
Cotton_A_19366_CDS 40 89 40 90 PF00010.26 HLH Domain 1 52 53 32.0 8.8e-08 1 No_clan
Cotton_A_22009_CDS 22 107 10 107 PF14368.6 LTP_2 Family 15 97 97 57.3 1.2e-15 1 CL0482
Cotton_A_04246_CDS 58 414 57 416 PF07690.16 MFS_1 Family 2 351 353 76.2 2.2e-21 1 CL0015
Cotton_A_40149_CDS 4 77 3 78 PF02798.20 GST_N Domain 2 75 76 67.2 1.2e-18 1 CL0172
Cotton_A_40149_CDS 114 201 108 204 PF14497.6 GST_C_3 Domain 8 92 99 37.3 2.4e-09 1 CL0497
Cotton_A_05784_CDS 292 400 291 401 PF01399.27 PCI Domain 2 104 105 68.2 7.2e-19 1 CL0123
Cotton_A_05784_CDS 406 438 406 438 PF18098.1 RPN5_C Domain 1 33 33 54.7 7.6e-15 1 No_clan
Cotton_A_34775_CDS 74 399 74 408 PF07992.14 Pyr_redox_2 Domain 1 285 294 200.6 3.1e-59 1 CL0063
Cotton_A_34775_CDS 401 425 400 428 PF00036.32 EF-hand_1 Domain 2 26 29 26.2 3.4e-06 1 CL0220
Cotton_A_16786_CDS 48 157 48 164 PF01554.18 MatE Family 1 110 161 84.0 8.8e-24 1 CL0222
Cotton_A_36301_CDS 44 196 44 197 PF03737.15 RraA-like Family 1 149 150 149.4 8.2e-44 1 CL0364
Cotton_A_03010_CDS 122 420 121 420 PF00069.25 Pkinase Domain 2 264 264 217.9 1.5e-64 1 CL0016
Cotton_A_03010_CDS 439 483 439 483 PF00433.24 Pkinase_C Family 1 46 46 28.5 1.8e-06 1 No_clan
Cotton_A_04331_CDS 27 281 27 281 PF00069.25 Pkinase Domain 1 264 264 253.4 2.3e-75 1 CL0016
Cotton_A_04331_CDS 307 362 305 363 PF03822.14 NAF Domain 4 52 54 59.0 3.9e-16 1 CL0573
Cotton_A_01189_CDS 7 56 6 57 PF00847.20 AP2 Domain 2 53 54 43.3 3.2e-11 1 CL0081
Cotton_A_39981_CDS 100 424 98 430 PF00520.31 Ion_trans Family 3 234 245 45.5 5.2e-12 1 CL0030
Cotton_A_39981_CDS 526 614 524 619 PF00027.29 cNMP_binding Domain 3 83 89 28.6 1.1e-06 1 CL0029
Cotton_A_07619_CDS 1 121 1 126 PF05529.12 Bap31 Family 1 130 135 23.1 5.4e-05 1 No_clan
Cotton_A_19525_CDS 30 106 29 107 PF14144.6 DOG1 Family 2 76 77 68.3 4.8e-19 1 No_clan
Cotton_A_04109_CDS 26 81 10 81 PF03876.17 SHS2_Rpb7-N Domain 16 70 70 28.0 2.1e-06 1 CL0319
Cotton_A_07474_CDS 51 393 49 393 PF00291.25 PALP Family 3 294 294 212.4 8.8e-63 1 CL0063
Cotton_A_40485_CDS 128 150 128 150 PF00560.33 LRR_1 Repeat 1 23 23 11.8 0.3 1 CL0022
Cotton_A_40485_CDS 152 211 152 211 PF13855.6 LRR_8 Repeat 2 61 61 27.6 1.8e-06 1 CL0022
Cotton_A_40485_CDS 223 283 223 283 PF13855.6 LRR_8 Repeat 1 61 61 28.6 9.1e-07 1 CL0022
Cotton_A_40485_CDS 286 332 285 332 PF13855.6 LRR_8 Repeat 15 61 61 29.0 6.7e-07 1 CL0022
Cotton_A_40485_CDS 524 801 519 801 PF07714.17 Pkinase_Tyr Domain 6 259 259 68.3 6e-19 1 CL0016
Cotton_A_37033_CDS 13 113 12 122 PF03321.13 GH3 Family 2 106 527 108.1 5.2e-31 1 CL0378
Cotton_A_02376_CDS 392 513 389 524 PF00566.18 RabGAP-TBC Family 72 195 215 106.8 1.2e-30 1 No_clan
Cotton_A_11411_CDS 14 40 11 41 PF01535.20 PPR Family 4 30 31 16.2 0.0089 1 CL0020
Cotton_A_11411_CDS 70 118 70 119 PF13041.6 PPR_2 Repeat 1 49 50 31.6 1.4e-07 1 CL0020
Cotton_A_11411_CDS 146 172 146 173 PF01535.20 PPR Family 4 30 31 13.4 0.069 1 CL0020
Cotton_A_11411_CDS 174 203 174 204 PF01535.20 PPR Family 1 30 31 22.1 0.00012 1 CL0020
Cotton_A_11411_CDS 247 267 247 270 PF01535.20 PPR Family 4 24 31 9.6 1.1 1 CL0020
Cotton_A_11411_CDS 349 374 346 375 PF01535.20 PPR Family 4 29 31 18.4 0.0018 1 CL0020
Cotton_A_11411_CDS 375 422 374 423 PF13041.6 PPR_2 Repeat 2 49 50 33.3 4.1e-08 1 CL0020
Cotton_A_11411_CDS 450 473 447 475 PF01535.20 PPR Family 4 27 31 20.6 0.00036 1 CL0020
Cotton_A_11411_CDS 478 500 478 501 PF01535.20 PPR Family 1 23 31 10.4 0.65 1 CL0020
Cotton_A_15903_CDS 127 204 127 224 PF00005.27 ABC_tran Domain 1 79 137 45.9 7.6e-12 1 CL0023
Cotton_A_25518_CDS 198 573 198 573 PF11904.8 GPCR_chapero_1 Domain 1 307 307 312.5 3.2e-93 1 No_clan
Cotton_A_08070_CDS 41 96 41 96 PF08246.12 Inhibitor_I29 Domain 1 58 58 42.7 5.5e-11 1 No_clan
Cotton_A_08070_CDS 151 288 151 288 PF00112.23 Peptidase_C1 Domain 81 218 218 139.4 1.7e-40 1 CL0125
Cotton_A_33048_CDS 61 164 61 165 PF00011.21 HSP20 Family 1 101 102 109.4 8.3e-32 1 CL0190
Cotton_A_09749_CDS 4 85 2 86 PF00276.20 Ribosomal_L23 Family 3 84 86 68.0 6.8e-19 1 No_clan
Cotton_A_24609_CDS 14 86 12 87 PF06404.12 PSK Family 1 89 90 52.6 6.9e-14 1 No_clan
Cotton_A_07910_CDS 82 153 82 153 PF04640.14 PLATZ Family 1 82 82 100.6 5.6e-29 1 No_clan
Cotton_A_11505_CDS 1 180 1 190 PF02990.16 EMP70 Family 209 377 519 174.7 2.9e-51 1 No_clan
Cotton_A_11505_CDS 189 239 182 243 PF02990.16 EMP70 Family 465 515 519 47.7 8.9e-13 1 No_clan
Cotton_A_02187_CDS 104 128 103 129 PF00642.24 zf-CCCH Family 2 26 27 34.5 1.4e-08 1 CL0537
Cotton_A_02187_CDS 156 181 155 181 PF00642.24 zf-CCCH Family 2 27 27 34.9 9.9e-09 1 CL0537
Cotton_A_02187_CDS 204 228 202 228 PF00642.24 zf-CCCH Family 3 27 27 41.5 8.2e-11 1 CL0537
Cotton_A_02187_CDS 274 298 273 299 PF00642.24 zf-CCCH Family 2 26 27 39.2 4.4e-10 1 CL0537
Cotton_A_02187_CDS 365 389 364 390 PF00642.24 zf-CCCH Family 2 26 27 43.1 2.7e-11 1 CL0537
Cotton_A_02187_CDS 419 440 414 440 PF00642.24 zf-CCCH Family 6 27 27 40.0 2.5e-10 1 CL0537
Cotton_A_08555_CDS 120 169 119 170 PF00847.20 AP2 Domain 2 53 54 44.4 1.4e-11 1 CL0081
Cotton_A_35831_CDS 73 92 73 92 PF07725.12 LRR_3 Repeat 1 20 20 28.9 6.5e-07 1 CL0022
Cotton_A_19937_CDS 66 127 66 127 PF00226.31 DnaJ Domain 1 63 63 69.0 2.8e-19 1 CL0392
Cotton_A_19937_CDS 480 688 479 688 PF11926.8 DUF3444 Family 2 212 212 249.6 2.3e-74 1 No_clan
Cotton_A_31353_CDS 21 233 1 233 PF00149.28 Metallophos Domain 2 204 204 86.4 3.7e-24 1 CL0163
Cotton_A_31353_CDS 302 340 285 349 PF14008.6 Metallophos_C Domain 20 57 63 37.3 3.8e-09 1 No_clan
Cotton_A_22370_CDS 41 112 41 136 PF03140.15 DUF247 Family 1 76 397 34.7 1.2e-08 1 No_clan
Cotton_A_24687_CDS 95 189 95 190 PF01588.20 tRNA_bind Domain 1 95 96 98.1 2.3e-28 1 CL0021
Cotton_A_05196_CDS 21 73 4 74 PF00005.27 ABC_tran Domain 80 136 137 26.5 7.4e-06 1 CL0023
Cotton_A_22044_CDS 488 643 488 645 PF02518.26 HATPase_c Domain 1 110 112 87.1 1.1e-24 1 CL0025
Cotton_A_22044_CDS 936 1051 936 1052 PF00072.24 Response_reg Domain 1 111 112 63.4 2e-17 1 CL0304
Cotton_A_07522_CDS 42 68 40 69 PF04438.16 zf-HIT Domain 3 29 30 29.4 5.3e-07 1 CL0175
Cotton_A_07522_CDS 160 332 160 332 PF00270.29 DEAD Domain 1 176 176 140.9 3.4e-41 1 CL0023
Cotton_A_07522_CDS 367 477 366 477 PF00271.31 Helicase_C Family 2 111 111 69.5 2.9e-19 1 CL0023
Cotton_A_31778_CDS 5 96 5 107 PF12796.7 Ank_2 Repeat 1 75 83 38.3 1.5e-09 1 CL0465
Cotton_A_31778_CDS 116 171 104 177 PF12796.7 Ank_2 Repeat 26 74 83 30.3 4.7e-07 1 CL0465
Cotton_A_31778_CDS 234 323 234 331 PF12796.7 Ank_2 Repeat 1 75 83 40.0 4.5e-10 1 CL0465
Cotton_A_31778_CDS 468 576 465 577 PF13962.6 PGG Domain 4 115 116 84.6 4.1e-24 1 No_clan
Cotton_A_25911_CDS 70 334 69 335 PF03381.15 CDC50 Family 2 279 280 302.5 3.2e-90 1 No_clan
Cotton_A_12451_CDS 91 368 90 369 PF00483.23 NTP_transferase Family 2 247 248 249.4 3.7e-74 1 CL0110
Cotton_A_27511_CDS 10 70 9 72 PF13499.6 EF-hand_7 Domain 2 68 71 41.7 1.2e-10 1 CL0220
Cotton_A_27511_CDS 84 146 83 147 PF13499.6 EF-hand_7 Domain 2 70 71 54.5 1.2e-14 1 CL0220
Cotton_A_11755_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 56.6 2.2e-15 1 CL0123
Cotton_A_11755_CDS 67 112 67 112 PF00249.31 Myb_DNA-binding Domain 1 46 46 56.0 3.4e-15 1 CL0123
Cotton_A_35459_CDS 1 226 1 237 PF03140.15 DUF247 Family 36 242 397 120.1 1.3e-34 1 No_clan
Cotton_A_35082_CDS 7 94 7 100 PF05564.12 Auxin_repressed Family 1 60 118 29.6 9.2e-07 1 No_clan
Cotton_A_29197_CDS 16 185 16 186 PF03357.21 Snf7 Family 1 172 173 132.3 1.3e-38 1 CL0235
Cotton_A_13424_CDS 125 286 125 288 PF00091.25 Tubulin Domain 1 195 197 131.4 4.6e-38 1 CL0566
Cotton_A_13424_CDS 336 430 336 430 PF12327.8 FtsZ_C Domain 1 95 95 105.3 1.5e-30 1 CL0442
Cotton_A_30182_CDS 150 170 148 176 PF01535.20 PPR Family 4 24 31 10.3 0.67 1 CL0020
Cotton_A_30182_CDS 187 213 186 216 PF01535.20 PPR Family 2 28 31 14.6 0.028 1 CL0020
Cotton_A_07797_CDS 16 39 16 39 PF01754.16 zf-A20 Family 1 24 24 48.0 8.5e-13 1 No_clan
Cotton_A_07797_CDS 113 150 113 150 PF01428.16 zf-AN1 Family 1 40 40 36.8 3.2e-09 1 No_clan
Cotton_A_28728_CDS 35 281 35 296 PF00657.22 Lipase_GDSL Family 1 181 200 88.9 4.3e-25 1 CL0264
Cotton_A_28506_CDS 35 183 30 201 PF00464.19 SHMT Domain 18 166 399 205.0 1.4e-60 1 CL0061
Cotton_A_23044_CDS 240 300 235 302 PF12174.8 RST Domain 5 65 67 59.4 2.4e-16 1 No_clan
Cotton_A_15146_CDS 100 473 100 473 PF00916.20 Sulfate_transp Family 1 380 380 403.4 7.7e-121 1 CL0062
Cotton_A_15146_CDS 524 643 524 643 PF01740.21 STAS Domain 1 117 117 98.1 2.3e-28 1 CL0502
Cotton_A_28783_CDS 3 79 1 79 PF17917.1 RT_RNaseH Domain 29 105 105 93.9 6.3e-27 1 CL0219
Cotton_A_14873_CDS 8 98 7 107 PF00168.30 C2 Domain 3 94 103 55.0 8.2e-15 1 CL0154
Cotton_A_38458_CDS 117 233 112 238 PF00485.18 PRK Domain 67 188 197 33.0 4.8e-08 1 CL0023
Cotton_A_38458_CDS 579 746 579 750 PF00485.18 PRK Domain 1 188 197 56.7 2.7e-15 1 CL0023
Cotton_A_38185_CDS 65 445 65 447 PF00916.20 Sulfate_transp Family 1 378 380 435.4 1.4e-130 1 CL0062
Cotton_A_38185_CDS 498 616 498 616 PF01740.21 STAS Domain 1 117 117 111.3 2e-32 1 CL0502
Cotton_A_03953_CDS 57 133 56 154 PF00293.28 NUDIX Domain 2 71 131 44.5 1.4e-11 1 CL0261
Cotton_A_25025_CDS 74 393 67 401 PF00295.17 Glyco_hydro_28 Domain 7 320 325 298.6 5e-89 1 CL0268
Cotton_A_36630_CDS 68 228 68 228 PF01554.18 MatE Family 1 161 161 106.6 9.8e-31 1 CL0222
Cotton_A_36630_CDS 289 449 288 451 PF01554.18 MatE Family 2 159 161 111.4 3.1e-32 1 CL0222
Cotton_A_25436_CDS 73 348 73 352 PF00664.23 ABC_membrane Family 1 270 274 209.5 7.1e-62 1 CL0241
Cotton_A_25436_CDS 416 566 416 566 PF00005.27 ABC_tran Domain 1 137 137 119.0 2.1e-34 1 CL0023
Cotton_A_05052_CDS 31 74 29 75 PF08263.12 LRRNT_2 Family 3 40 41 34.6 1.7e-08 1 No_clan
Cotton_A_05052_CDS 102 162 102 162 PF13855.6 LRR_8 Repeat 1 61 61 33.5 2.5e-08 1 CL0022
Cotton_A_05052_CDS 222 282 222 282 PF13855.6 LRR_8 Repeat 1 61 61 43.3 2.3e-11 1 CL0022
Cotton_A_05052_CDS 463 522 454 522 PF13855.6 LRR_8 Repeat 2 61 61 32.2 6.8e-08 1 CL0022
Cotton_A_05052_CDS 534 594 534 594 PF13855.6 LRR_8 Repeat 1 61 61 35.5 6.1e-09 1 CL0022
Cotton_A_05052_CDS 757 1013 752 1017 PF00069.25 Pkinase Domain 6 256 264 154.3 4e-45 1 CL0016
Cotton_A_30184_CDS 70 166 66 166 PF02225.22 PA Family 5 89 89 41.9 7.3e-11 1 CL0364
Cotton_A_24545_CDS 22 129 21 130 PF13947.6 GUB_WAK_bind Domain 2 105 106 77.6 1.1e-21 1 No_clan
Cotton_A_24545_CDS 262 365 261 366 PF13947.6 GUB_WAK_bind Domain 3 105 106 99.6 1.6e-28 1 No_clan
Cotton_A_24545_CDS 649 899 649 906 PF00069.25 Pkinase Domain 1 258 264 126.0 1.6e-36 1 CL0016
Cotton_A_30157_CDS 40 273 39 292 PF01301.19 Glyco_hydro_35 Domain 2 244 316 274.5 1.5e-81 1 CL0058
Cotton_A_30157_CDS 361 441 356 442 PF01301.19 Glyco_hydro_35 Domain 236 315 316 93.7 1.5e-26 1 CL0058
Cotton_A_30157_CDS 480 534 452 534 PF17834.1 GHD Domain 18 72 72 77.7 5e-22 1 CL0369
Cotton_A_30157_CDS 904 981 904 981 PF02140.18 Gal_Lectin Domain 1 80 80 83.0 1.6e-23 1 No_clan
Cotton_A_17578_CDS 157 354 156 366 PF03151.16 TPT Family 2 169 290 37.9 1.2e-09 1 CL0184
Cotton_A_17578_CDS 354 411 342 412 PF07727.14 RVT_2 Family 184 241 242 34.4 1.8e-08 1 CL0027
Cotton_A_08905_CDS 33 104 7 104 PF02519.14 Auxin_inducible Family 19 90 90 99.4 9.4e-29 1 No_clan
Cotton_A_00522_CDS 38 285 37 285 PF05910.12 DUF868 Family 2 279 279 240.9 2e-71 1 No_clan
Cotton_A_33796_CDS 28 202 28 233 PF00857.20 Isochorismatase Family 1 156 175 95.2 5e-27 1 No_clan
Cotton_A_30335_CDS 16 61 11 61 PF00010.26 HLH Domain 10 53 53 26.4 5e-06 1 No_clan
Cotton_A_10344_CDS 23 202 22 215 PF07992.14 Pyr_redox_2 Domain 2 183 294 33.7 2.2e-08 1 CL0063
Cotton_A_28223_CDS 15 123 10 124 PF02536.14 mTERF Family 152 258 314 57.3 1.2e-15 1 No_clan
Cotton_A_28223_CDS 111 322 110 322 PF02536.14 mTERF Family 100 314 314 150.3 5.9e-44 1 No_clan
Cotton_A_40464_CDS 1 96 1 97 PF06045.11 Rhamnogal_lyase Family 30 126 213 89.9 1.5e-25 1 CL0103
Cotton_A_40464_CDS 300 372 299 373 PF14686.6 fn3_3 Domain 2 74 75 82.6 1.2e-23 1 CL0287
Cotton_A_40464_CDS 386 572 386 572 PF14683.6 CBM-like Domain 1 165 165 171.8 1e-50 1 CL0202
Cotton_A_23816_CDS 85 585 84 586 PF14222.6 MOR2-PAG1_N Family 2 550 551 354.4 1.4e-105 1 No_clan
Cotton_A_23816_CDS 623 1738 622 1738 PF14228.6 MOR2-PAG1_mid Family 2 1114 1114 2254.9 0 1 No_clan
Cotton_A_23816_CDS 1763 2045 1763 2045 PF14225.6 MOR2-PAG1_C Family 1 253 253 271.6 8.2e-81 1 No_clan
Cotton_A_28270_CDS 14 86 13 86 PF02068.16 Metallothio_PEC Family 2 75 75 83.3 1.1e-23 1 CL0461
Cotton_A_18404_CDS 530 652 530 652 PF12932.7 Sec16 Domain 1 118 118 72.6 4e-20 1 No_clan
Cotton_A_18404_CDS 711 964 711 989 PF12931.7 Sec16_C Domain 1 269 302 179.7 9.9e-53 1 No_clan
Cotton_A_05481_CDS 51 182 50 182 PF16863.5 NtCtMGAM_N Domain 2 116 116 117.0 4.7e-34 1 CL0103
Cotton_A_05481_CDS 185 252 184 255 PF13802.6 Gal_mutarotas_2 Domain 2 62 66 28.2 1.7e-06 1 CL0103
Cotton_A_05481_CDS 274 764 274 764 PF01055.26 Glyco_hydro_31 Family 1 440 440 505.7 1.3e-151 1 CL0058
Cotton_A_40251_CDS 5 216 3 226 PF00759.19 Glyco_hydro_9 Domain 41 249 411 233.0 8.5e-69 1 CL0059
Cotton_A_27795_CDS 30 102 24 185 PF00133.22 tRNA-synt_1 Family 9 80 602 32.0 3.9e-08 1 CL0039
Cotton_A_27795_CDS 179 406 176 406 PF09334.11 tRNA-synt_1g Family 162 391 391 212.8 6.4e-63 1 CL0039
Cotton_A_27795_CDS 434 573 428 578 PF08264.13 Anticodon_1 Domain 8 150 152 30.4 3.3e-07 1 CL0258
Cotton_A_36467_CDS 460 686 459 688 PF04842.12 DUF639 Family 2 229 231 292.9 1.4e-87 1 CL0484
Cotton_A_20079_CDS 37 134 31 136 PF03070.16 TENA_THI-4 Family 15 115 210 32.9 5.4e-08 1 CL0230
Cotton_A_20079_CDS 157 245 150 249 PF03070.16 TENA_THI-4 Family 120 206 210 27.4 2.5e-06 1 CL0230
Cotton_A_06189_CDS 87 321 87 323 PF12697.7 Abhydrolase_6 Domain 1 218 220 50.0 5.7e-13 1 CL0028
Cotton_A_32294_CDS 197 244 197 246 PF13041.6 PPR_2 Repeat 1 48 50 49.9 2.6e-13 1 CL0020
Cotton_A_32294_CDS 267 316 267 316 PF13041.6 PPR_2 Repeat 1 50 50 67.8 6.9e-19 1 CL0020
Cotton_A_32294_CDS 369 399 368 401 PF12854.7 PPR_1 Repeat 2 32 34 29.9 3.3e-07 1 CL0020
Cotton_A_32294_CDS 406 455 406 455 PF13041.6 PPR_2 Repeat 1 50 50 76.2 1.6e-21 1 CL0020
Cotton_A_02248_CDS 128 227 128 227 PF08241.12 Methyltransf_11 Domain 1 96 96 74.1 1e-20 1 CL0063
Cotton_A_37599_CDS 294 370 292 371 PF00564.24 PB1 Domain 3 83 84 54.4 8.8e-15 1 CL0072
Cotton_A_35421_CDS 40 108 21 112 PF05705.14 DUF829 Domain 6 73 241 41.1 1.9e-10 1 CL0028
Cotton_A_18412_CDS 181 219 173 219 PF10533.9 Plant_zn_clust Domain 11 49 49 61.3 6.5e-17 1 No_clan
Cotton_A_18412_CDS 223 241 222 244 PF03106.15 WRKY Domain 2 20 59 24.9 1.7e-05 1 CL0274
Cotton_A_35625_CDS 103 349 46 352 PF00933.21 Glyco_hydro_3 Domain 81 316 319 103.6 1.3e-29 1 CL0058
Cotton_A_35625_CDS 393 569 393 571 PF01915.22 Glyco_hydro_3_C Domain 1 163 204 144.8 3.3e-42 1 No_clan
Cotton_A_29891_CDS 89 162 87 162 PF10716.9 NdhL Family 3 76 76 107.8 1.9e-31 1 No_clan
Cotton_A_33211_CDS 36 349 33 349 PF00069.25 Pkinase Domain 5 264 264 225.7 6.3e-67 1 CL0016
Cotton_A_00132_CDS 26 80 22 80 PF07333.12 SLR1-BP Domain 5 58 58 42.6 6.1e-11 1 CL0054
Cotton_A_09603_CDS 27 62 15 63 PF00646.33 F-box Domain 12 47 48 19.6 0.00062 1 CL0271
Cotton_A_23546_CDS 388 587 385 640 PF00069.25 Pkinase Domain 4 199 264 99.6 1.8e-28 1 CL0016
Cotton_A_24826_CDS 27 102 25 102 PF03134.19 TB2_DP1_HVA22 Family 2 77 77 65.0 4.5e-18 1 No_clan
Cotton_A_30971_CDS 18 54 17 58 PF00646.33 F-box Domain 8 44 48 23.1 4.9e-05 1 CL0271
Cotton_A_40467_CDS 127 509 127 512 PF04801.13 Sin_N Family 1 426 429 315.9 5e-94 1 CL0662
Cotton_A_18160_CDS 22 92 21 92 PF07983.13 X8 Domain 2 76 76 78.3 5.1e-22 1 No_clan
Cotton_A_22951_CDS 43 68 43 69 PF13912.6 zf-C2H2_6 Domain 1 26 27 45.5 4.9e-12 1 CL0361
Cotton_A_22951_CDS 90 114 89 115 PF13912.6 zf-C2H2_6 Domain 2 26 27 39.1 4.9e-10 1 CL0361
Cotton_A_35935_CDS 64 98 63 99 PF00190.22 Cupin_1 Domain 2 36 151 22.0 0.0001 1 CL0029
Cotton_A_35935_CDS 99 167 98 167 PF00190.22 Cupin_1 Domain 83 151 151 72.6 2.5e-20 1 CL0029
Cotton_A_13793_CDS 16 131 1 136 PF03901.17 Glyco_transf_22 Family 165 287 417 85.5 4.5e-24 1 CL0111
Cotton_A_13793_CDS 133 206 124 210 PF03901.17 Glyco_transf_22 Family 314 387 417 37.4 1.7e-09 1 CL0111
Cotton_A_23601_CDS 55 215 55 215 PF01554.18 MatE Family 1 161 161 131.7 1.9e-38 1 CL0222
Cotton_A_23601_CDS 276 439 276 439 PF01554.18 MatE Family 1 161 161 130.1 5.7e-38 1 CL0222
Cotton_A_31674_CDS 24 103 1 109 PF00069.25 Pkinase Domain 99 172 264 57.3 1.5e-15 1 CL0016
Cotton_A_38678_CDS 5 63 1 63 PF15811.5 SVIP Family 11 76 77 31.4 1.9e-07 1 No_clan
Cotton_A_20699_CDS 33 176 31 176 PF04043.15 PMEI Domain 3 154 154 82.5 4e-23 1 No_clan
Cotton_A_36865_CDS 24 62 24 62 PF00187.19 Chitin_bind_1 Domain 1 38 38 52.3 5.8e-14 1 No_clan
Cotton_A_36865_CDS 77 309 77 309 PF00182.19 Glyco_hydro_19 Domain 1 232 232 423.6 2.4e-127 1 CL0037
Cotton_A_08762_CDS 76 350 74 350 PF07714.17 Pkinase_Tyr Domain 3 259 259 156.4 8.1e-46 1 CL0016
Cotton_A_25353_CDS 59 133 58 134 PF03061.22 4HBT Domain 2 78 79 37.5 2.2e-09 1 CL0050
Cotton_A_13675_CDS 27 171 24 174 PF00407.19 Bet_v_1 Domain 6 148 151 43.7 2.5e-11 1 CL0209
Cotton_A_37013_CDS 177 202 174 203 PF14383.6 VARLMGL Domain 5 30 32 31.0 1.3e-07 1 No_clan
Cotton_A_37013_CDS 624 760 624 760 PF14309.6 DUF4378 Family 1 165 165 66.7 3.1e-18 1 No_clan
Cotton_A_26491_CDS 31 69 30 69 PF08263.12 LRRNT_2 Family 2 41 41 39.9 3.8e-10 1 No_clan
Cotton_A_19177_CDS 210 269 210 269 PF13855.6 LRR_8 Repeat 1 61 61 36.0 4.3e-09 1 CL0022
Cotton_A_15200_CDS 164 211 162 211 PF00010.26 HLH Domain 4 53 53 28.8 8.8e-07 1 No_clan
Cotton_A_14887_CDS 1 155 1 167 PF02458.15 Transferase Family 24 160 434 92.2 2.7e-26 1 CL0149
Cotton_A_22899_CDS 7 64 6 130 PF06364.12 DUF1068 Family 2 60 168 60.7 1.6e-16 1 No_clan
Cotton_A_07950_CDS 32 82 31 82 PF00249.31 Myb_DNA-binding Domain 2 46 46 31.8 1.2e-07 1 CL0123
Cotton_A_07950_CDS 118 163 117 164 PF14379.6 Myb_CC_LHEQLE Family 2 47 48 72.3 1.9e-20 1 No_clan
Cotton_A_25924_CDS 252 309 252 309 PF08031.12 BBE Domain 1 46 46 55.0 6.3e-15 1 CL0277
Cotton_A_29638_CDS 16 68 14 88 PF01423.22 LSM Domain 3 48 67 50.8 9.7e-14 1 CL0527
Cotton_A_28583_CDS 43 246 5 246 PF02309.16 AUX_IAA Family 61 237 237 224.0 2.3e-66 1 CL0072
Cotton_A_29373_CDS 2 330 1 332 PF01702.18 TGT Family 26 348 350 451.5 2e-135 1 No_clan
Cotton_A_08450_CDS 150 231 150 239 PF00855.17 PWWP Domain 1 89 96 58.7 5.6e-16 1 CL0049
Cotton_A_25290_CDS 37 107 37 107 PF00076.22 RRM_1 Domain 1 70 70 85.9 1.2e-24 1 CL0221
Cotton_A_35261_CDS 26 66 25 66 PF08263.12 LRRNT_2 Family 2 41 41 19.4 0.00096 1 No_clan
Cotton_A_35261_CDS 241 299 240 299 PF13855.6 LRR_8 Repeat 2 61 61 27.2 2.4e-06 1 CL0022
Cotton_A_35261_CDS 329 367 327 367 PF08263.12 LRRNT_2 Family 3 41 41 20.1 0.00058 1 No_clan
Cotton_A_35261_CDS 379 430 370 430 PF13855.6 LRR_8 Repeat 10 61 61 29.2 5.8e-07 1 CL0022
Cotton_A_35261_CDS 621 893 620 896 PF00069.25 Pkinase Domain 2 259 264 156.8 6.7e-46 1 CL0016
Cotton_A_17463_CDS 25 88 25 93 PF00076.22 RRM_1 Domain 1 65 70 31.0 1.6e-07 1 CL0221
Cotton_A_17463_CDS 193 253 193 257 PF00076.22 RRM_1 Domain 1 64 70 35.5 6.3e-09 1 CL0221
Cotton_A_29673_CDS 4 101 3 101 PF00438.20 S-AdoMet_synt_N Domain 2 99 99 146.0 4.4e-43 1 No_clan
Cotton_A_29673_CDS 117 238 117 238 PF02772.16 S-AdoMet_synt_M Domain 1 120 120 161.7 7.5e-48 1 No_clan
Cotton_A_29673_CDS 240 381 240 382 PF02773.16 S-AdoMet_synt_C Domain 1 137 138 206.3 1.6e-61 1 No_clan
Cotton_A_10375_CDS 33 81 31 82 PF00847.20 AP2 Domain 3 53 54 41.0 1.7e-10 1 CL0081
Cotton_A_07781_CDS 27 63 26 64 PF08263.12 LRRNT_2 Family 2 40 41 35.0 1.3e-08 1 No_clan
Cotton_A_07781_CDS 119 178 118 178 PF13855.6 LRR_8 Repeat 2 61 61 33.9 1.9e-08 1 CL0022
Cotton_A_05229_CDS 60 239 60 251 PF01975.17 SurE Family 1 178 195 136.8 7.2e-40 1 No_clan
Cotton_A_14542_CDS 213 379 210 382 PF03357.21 Snf7 Family 4 170 173 152.7 7.2e-45 1 CL0235
Cotton_A_00978_CDS 40 433 40 434 PF01490.18 Aa_trans Family 1 408 409 268.6 7.8e-80 1 CL0062
Cotton_A_26963_CDS 342 384 342 385 PF06203.14 CCT Motif 1 43 44 61.7 4.8e-17 1 CL0281
Cotton_A_21706_CDS 192 253 191 253 PF13812.6 PPR_3 Repeat 2 63 63 68.1 5.1e-19 1 CL0020
Cotton_A_21706_CDS 297 356 297 359 PF13812.6 PPR_3 Repeat 1 60 63 55.2 5.6e-15 1 CL0020
Cotton_A_21706_CDS 368 429 367 429 PF13812.6 PPR_3 Repeat 2 63 63 73.9 7.9e-21 1 CL0020
Cotton_A_21706_CDS 452 482 452 482 PF01535.20 PPR Family 1 31 31 26.7 4.1e-06 1 CL0020
Cotton_A_21706_CDS 488 533 484 533 PF13041.6 PPR_2 Repeat 5 50 50 38.9 7.4e-10 1 CL0020
Cotton_A_21706_CDS 616 671 612 673 PF13812.6 PPR_3 Repeat 5 60 63 28.7 1e-06 1 CL0020
Cotton_A_21706_CDS 694 739 694 742 PF13041.6 PPR_2 Repeat 1 46 50 54.4 1.1e-14 1 CL0020
Cotton_A_21706_CDS 761 789 760 792 PF12854.7 PPR_1 Repeat 2 30 34 32.5 4.9e-08 1 CL0020
Cotton_A_17305_CDS 5 97 5 100 PF12796.7 Ank_2 Repeat 1 80 83 35.8 8.9e-09 1 CL0465
Cotton_A_17305_CDS 108 191 108 195 PF12796.7 Ank_2 Repeat 1 67 83 39.3 7.4e-10 1 CL0465
Cotton_A_33534_CDS 144 247 144 247 PF08414.10 NADPH_Ox Family 1 101 101 120.2 3.9e-35 1 CL0220
Cotton_A_33534_CDS 407 564 406 564 PF01794.19 Ferric_reduct Family 2 125 125 79.9 1.7e-22 1 CL0328
Cotton_A_33534_CDS 606 719 605 720 PF08022.12 FAD_binding_8 Domain 2 108 109 115.9 8.3e-34 1 CL0076
Cotton_A_33534_CDS 726 898 726 899 PF08030.12 NAD_binding_6 Domain 1 155 156 179.1 6.1e-53 1 CL0091
Cotton_A_09439_CDS 100 149 87 149 PF02921.14 UCR_TM Family 8 66 66 42.4 7e-11 1 CL0300
Cotton_A_09439_CDS 161 264 156 267 PF00355.26 Rieske Domain 9 87 89 45.0 7.5e-12 1 CL0516
Cotton_A_03130_CDS 24 111 21 113 PF00153.27 Mito_carr Family 5 95 97 80.4 7e-23 1 No_clan
Cotton_A_03130_CDS 121 219 118 222 PF00153.27 Mito_carr Family 6 94 97 83.2 9e-24 1 No_clan
Cotton_A_03130_CDS 223 315 222 318 PF00153.27 Mito_carr Family 2 93 97 74.7 4e-21 1 No_clan
Cotton_A_01051_CDS 91 304 91 304 PF03181.15 BURP Family 1 215 215 255.8 2.9e-76 1 No_clan
Cotton_A_11834_CDS 106 155 105 156 PF13964.6 Kelch_6 Repeat 2 49 50 32.6 6.6e-08 1 CL0186
Cotton_A_11834_CDS 167 201 156 202 PF01344.25 Kelch_1 Repeat 12 45 46 34.2 1.4e-08 1 CL0186
Cotton_A_13765_CDS 29 480 22 481 PF00501.28 AMP-binding Family 8 422 423 238.8 8.4e-71 1 CL0378
Cotton_A_18319_CDS 1 321 1 321 PF03105.19 SPX Domain 1 384 384 213.2 1.1e-62 1 No_clan
Cotton_A_18319_CDS 411 749 410 749 PF03124.14 EXS Family 2 331 331 285.9 4.4e-85 1 CL0182
Cotton_A_30420_CDS 565 691 559 748 PF00078.27 RVT_1 Family 8 189 222 44.0 1.8e-11 1 CL0027
Cotton_A_30420_CDS 761 840 710 840 PF17917.1 RT_RNaseH Domain 26 105 105 59.2 4.1e-16 1 CL0219
Cotton_A_30420_CDS 891 965 886 982 PF13456.6 RVT_3 Domain 31 105 124 42.4 5.3e-11 1 CL0219
Cotton_A_30420_CDS 1004 1059 1002 1062 PF17921.1 Integrase_H2C2 Domain 3 55 58 30.3 3.3e-07 1 CL0361
Cotton_A_19548_CDS 2 62 1 63 PF01423.22 LSM Domain 5 66 67 61.5 4.4e-17 1 CL0527
Cotton_A_22263_CDS 60 89 60 90 PF04434.17 SWIM Domain 1 39 40 24.2 2e-05 1 No_clan
Cotton_A_22263_CDS 155 202 154 202 PF13639.6 zf-RING_2 Domain 2 44 44 35.8 7.4e-09 1 CL0229
Cotton_A_37159_CDS 82 140 80 141 PF00170.21 bZIP_1 Family 5 63 64 46.8 2.4e-12 1 CL0018
Cotton_A_38826_CDS 448 551 448 553 PF01843.19 DIL Family 1 102 104 72.4 3e-20 1 No_clan
Cotton_A_08887_CDS 3 56 1 56 PF18552.1 PheRS_DBD1 Domain 6 59 59 30.3 2.6e-07 1 CL0123
Cotton_A_08887_CDS 70 125 70 125 PF18553.1 PheRS_DBD3 Domain 1 59 59 59.4 3.1e-16 1 CL0123
Cotton_A_08887_CDS 201 475 200 480 PF01409.20 tRNA-synt_2d Domain 2 241 245 304.1 7e-91 1 CL0040
Cotton_A_19796_CDS 164 248 164 248 PF01985.21 CRS1_YhbY Domain 1 84 84 64.4 7.8e-18 1 No_clan
Cotton_A_09001_CDS 167 306 166 308 PF12049.8 DUF3531 Family 2 141 143 177.3 1.6e-52 1 No_clan
Cotton_A_03554_CDS 52 655 35 662 PF03999.12 MAP65_ASE1 Family 17 591 598 405.7 3.7e-121 1 No_clan
Cotton_A_03554_CDS 863 977 863 979 PF03479.15 DUF296 Domain 1 105 107 95.8 1.9e-27 1 CL0615
Cotton_A_24221_CDS 46 250 44 250 PF00804.25 Syntaxin Domain 3 200 200 221.9 6.2e-66 1 CL0445
Cotton_A_24221_CDS 251 303 251 303 PF05739.19 SNARE Family 1 53 53 69.4 1.8e-19 1 No_clan
Cotton_A_24661_CDS 9 71 1 77 PF12796.7 Ank_2 Repeat 25 75 83 35.4 1.2e-08 1 CL0465
Cotton_A_24661_CDS 77 144 67 148 PF12796.7 Ank_2 Repeat 18 79 83 45.6 8.2e-12 1 CL0465
Cotton_A_24661_CDS 151 207 143 218 PF12796.7 Ank_2 Repeat 25 74 83 43.4 4e-11 1 CL0465
Cotton_A_24661_CDS 217 279 207 283 PF12796.7 Ank_2 Repeat 20 77 83 32.9 7.5e-08 1 CL0465
Cotton_A_24661_CDS 334 450 333 450 PF13962.6 PGG Domain 2 116 116 103.0 8.4e-30 1 No_clan
Cotton_A_14016_CDS 102 119 101 120 PF00612.27 IQ Motif 2 19 21 21.8 9.8e-05 1 CL0220
Cotton_A_11292_CDS 12 54 9 57 PF13041.6 PPR_2 Repeat 5 47 50 36.2 5.1e-09 1 CL0020
Cotton_A_11292_CDS 86 116 86 116 PF01535.20 PPR Family 1 31 31 24.8 1.6e-05 1 CL0020
Cotton_A_11292_CDS 145 193 145 194 PF13041.6 PPR_2 Repeat 1 48 50 36.2 5e-09 1 CL0020
Cotton_A_11292_CDS 222 249 220 249 PF01535.20 PPR Family 4 31 31 18.1 0.0022 1 CL0020
Cotton_A_11292_CDS 250 263 250 263 PF01535.20 PPR Family 1 14 31 13.4 0.07 1 CL0020
Cotton_A_11974_CDS 2 63 1 66 PF13456.6 RVT_3 Domain 59 121 124 34.0 2.2e-08 1 CL0219
Cotton_A_33962_CDS 23 104 12 105 PF02362.21 B3 Family 15 100 101 57.3 1.1e-15 1 CL0405
Cotton_A_10477_CDS 5 65 2 65 PF00252.18 Ribosomal_L16 Family 77 132 132 57.8 1.1e-15 1 No_clan
Cotton_A_20223_CDS 38 225 38 226 PF00350.23 Dynamin_N Domain 1 167 168 174.0 2.6e-51 1 CL0023
Cotton_A_20223_CDS 235 508 235 512 PF01031.20 Dynamin_M Family 1 280 285 199.8 5.3e-59 1 No_clan
Cotton_A_20223_CDS 542 633 540 633 PF02212.18 GED Family 3 92 92 75.2 3.5e-21 1 No_clan
Cotton_A_21672_CDS 6 87 5 110 PF18052.1 Rx_N Domain 2 83 93 53.2 2.8e-14 1 No_clan
Cotton_A_21672_CDS 167 407 162 407 PF00931.22 NB-ARC Domain 7 252 252 192.0 9.6e-57 1 CL0023
Cotton_A_06698_CDS 67 110 66 110 PF13639.6 zf-RING_2 Domain 2 44 44 48.7 7.1e-13 1 CL0229
Cotton_A_26627_CDS 69 205 69 206 PF09229.11 Aha1_N Domain 1 135 137 101.8 3.4e-29 1 CL0648
Cotton_A_37539_CDS 116 504 113 505 PF05686.12 Glyco_transf_90 Family 4 395 396 480.5 3.7e-144 1 CL0113
Cotton_A_25274_CDS 356 592 356 592 PF07891.12 DUF1666 Family 1 246 246 302.6 2.2e-90 1 No_clan
Cotton_A_06887_CDS 1 215 1 216 PF00931.22 NB-ARC Domain 28 251 252 163.6 4.5e-48 1 CL0023
Cotton_A_10211_CDS 19 278 18 281 PF02705.16 K_trans Family 2 218 534 283.0 4.1e-84 1 CL0062
Cotton_A_16967_CDS 34 305 33 305 PF05910.12 DUF868 Family 2 279 279 343.0 1.5e-102 1 No_clan
Cotton_A_09288_CDS 67 108 60 108 PF13857.6 Ank_5 Repeat 15 56 56 32.3 8.5e-08 1 CL0465
Cotton_A_09288_CDS 184 614 184 614 PF11904.8 GPCR_chapero_1 Domain 1 307 307 308.9 4.2e-92 1 No_clan
Cotton_A_34898_CDS 62 151 30 151 PF00583.25 Acetyltransf_1 Family 39 117 117 29.0 9.8e-07 1 CL0257
Cotton_A_16356_CDS 19 448 5 451 PF02458.15 Transferase Family 19 430 434 162.3 1.5e-47 1 CL0149
Cotton_A_33800_CDS 10 91 2 93 PF08240.12 ADH_N Domain 34 107 109 46.3 3.1e-12 1 CL0296
Cotton_A_27980_CDS 13 355 13 356 PF01070.18 FMN_dh Domain 1 347 348 455.8 8.4e-137 1 CL0036
Cotton_A_00676_CDS 11 77 4 78 PF02519.14 Auxin_inducible Family 23 89 90 88.2 3e-25 1 No_clan
Cotton_A_04849_CDS 33 179 33 182 PF00078.27 RVT_1 Family 1 203 222 73.7 1.5e-20 1 CL0027
Cotton_A_04849_CDS 168 237 161 251 PF17919.1 RT_RNaseH_2 Domain 10 78 100 40.6 2e-10 1 CL0219
Cotton_A_04849_CDS 240 298 215 298 PF13456.6 RVT_3 Domain 14 73 124 29.8 4.4e-07 1 CL0219
Cotton_A_39767_CDS 13 108 10 116 PF05703.11 Auxin_canalis Family 4 115 256 23.2 5.6e-05 1 No_clan
Cotton_A_23150_CDS 65 465 57 481 PF12222.8 PNGaseA Family 11 414 434 350.0 1.8e-104 1 No_clan
Cotton_A_27827_CDS 36 471 36 472 PF01490.18 Aa_trans Family 1 408 409 401.2 4.2e-120 1 CL0062
Cotton_A_18092_CDS 37 260 33 261 PF03767.14 Acid_phosphat_B Family 5 229 230 225.8 5.3e-67 1 CL0137
Cotton_A_03628_CDS 66 176 66 177 PF00498.26 FHA Family 1 68 69 39.5 5.4e-10 1 CL0357
Cotton_A_03628_CDS 427 646 420 655 PF06087.12 Tyr-DNA_phospho Family 8 206 424 80.3 1.3e-22 1 CL0479
Cotton_A_03628_CDS 663 772 663 788 PF08797.11 HIRAN Domain 1 82 96 55.3 4.5e-15 1 No_clan
Cotton_A_03628_CDS 816 1050 800 1051 PF06087.12 Tyr-DNA_phospho Family 207 423 424 85.8 2.8e-24 1 CL0479
Cotton_A_15645_CDS 126 144 124 144 PF00612.27 IQ Motif 3 21 21 23.2 3.5e-05 1 CL0220
Cotton_A_15645_CDS 150 166 147 166 PF00612.27 IQ Motif 5 21 21 13.5 0.047 1 CL0220
Cotton_A_15645_CDS 383 479 383 494 PF13178.6 DUF4005 Family 1 76 93 85.2 3.7e-24 1 No_clan
Cotton_A_38474_CDS 1 48 1 48 PF03936.16 Terpene_synth_C Domain 220 267 267 55.3 6.1e-15 1 CL0613
Cotton_A_20494_CDS 77 127 73 137 PF00076.22 RRM_1 Domain 9 57 70 24.5 1.7e-05 1 CL0221
Cotton_A_20494_CDS 267 347 259 357 PF08777.11 RRM_3 Domain 13 90 102 56.9 1.7e-15 1 CL0221
Cotton_A_20494_CDS 422 468 422 468 PF00249.31 Myb_DNA-binding Domain 1 46 46 52.2 5.1e-14 1 CL0123
Cotton_A_20494_CDS 474 520 474 520 PF00249.31 Myb_DNA-binding Domain 1 46 46 65.6 3.4e-18 1 CL0123
Cotton_A_20494_CDS 526 568 526 570 PF00249.31 Myb_DNA-binding Domain 1 43 46 51.7 7.3e-14 1 CL0123
Cotton_A_03513_CDS 6 53 5 56 PF00847.20 AP2 Domain 2 51 54 46.2 3.9e-12 1 CL0081
Cotton_A_21863_CDS 1 48 1 97 PF00078.27 RVT_1 Family 132 180 222 32.7 5.1e-08 1 CL0027
Cotton_A_21863_CDS 139 177 137 181 PF17921.1 Integrase_H2C2 Domain 3 39 58 35.7 6.9e-09 1 CL0361
Cotton_A_33464_CDS 49 127 49 131 PF05938.11 Self-incomp_S1 Family 1 82 104 67.8 1e-18 1 No_clan
Cotton_A_23412_CDS 24 67 22 68 PF00646.33 F-box Domain 3 46 48 25.9 6.6e-06 1 CL0271
Cotton_A_23412_CDS 114 145 114 150 PF14299.6 PP2 Family 1 31 146 28.4 1.4e-06 1 No_clan
Cotton_A_10697_CDS 13 78 12 78 PF00226.31 DnaJ Domain 2 63 63 88.2 2.8e-25 1 CL0392
Cotton_A_32946_CDS 62 180 62 180 PF17808.1 fn3_PAP Domain 1 118 118 154.1 1.5e-45 1 CL0159
Cotton_A_32946_CDS 188 291 184 292 PF16656.5 Pur_ac_phosph_N Domain 5 93 94 33.3 5.4e-08 1 CL0159
Cotton_A_32946_CDS 303 516 302 516 PF00149.28 Metallophos Domain 2 204 204 73.7 2.8e-20 1 CL0163
Cotton_A_32946_CDS 541 600 541 600 PF14008.6 Metallophos_C Domain 1 63 63 60.5 2.2e-16 1 No_clan
Cotton_A_23219_CDS 29 271 28 272 PF01501.20 Glyco_transf_8 Family 2 255 256 139.1 1.9e-40 1 CL0110
Cotton_A_07734_CDS 29 116 17 208 PF01073.19 3Beta_HSD Family 48 136 280 26.5 2.9e-06 1 CL0063
Cotton_A_23032_CDS 13 60 13 60 PF00249.31 Myb_DNA-binding Domain 1 46 46 51.1 1.1e-13 1 CL0123
Cotton_A_23032_CDS 66 109 66 111 PF00249.31 Myb_DNA-binding Domain 1 44 46 53.7 1.7e-14 1 CL0123
Cotton_A_00698_CDS 242 275 242 276 PF00320.27 GATA Domain 1 34 36 56.0 2.1e-15 1 CL0167
Cotton_A_10670_CDS 1 240 1 244 PF03059.16 NAS Family 33 272 276 395.7 1e-118 1 CL0063
Cotton_A_00724_CDS 89 116 44 116 PF03765.15 CRAL_TRIO_N Domain 28 54 54 31.1 2e-07 1 CL0214
Cotton_A_00724_CDS 143 294 139 298 PF00650.20 CRAL_TRIO Domain 5 147 159 92.3 2.5e-26 1 CL0512
Cotton_A_34577_CDS 76 97 71 99 PF14383.6 VARLMGL Domain 7 28 32 21.3 0.00015 1 No_clan
Cotton_A_34577_CDS 174 217 173 217 PF12552.8 DUF3741 Family 2 45 45 49.8 2.4e-13 1 No_clan
Cotton_A_34577_CDS 802 944 800 944 PF14309.6 DUF4378 Family 3 165 165 91.2 9.2e-26 1 No_clan
Cotton_A_26478_CDS 43 128 42 128 PF00081.22 Sod_Fe_N Domain 2 82 82 68.5 5.3e-19 1 No_clan
Cotton_A_26478_CDS 138 235 135 238 PF02777.18 Sod_Fe_C Domain 4 99 102 118.7 1.1e-34 1 No_clan
Cotton_A_07924_CDS 101 291 99 293 PF08320.12 PIG-X Domain 3 209 211 90.7 1.2e-25 1 No_clan
Cotton_A_03057_CDS 167 391 154 439 PF00862.19 Sucrose_synth Family 273 481 548 37.4 9.5e-10 1 CL0113
Cotton_A_03057_CDS 471 646 462 647 PF00534.20 Glycos_transf_1 Family 11 171 172 86.8 1.2e-24 1 CL0113
Cotton_A_03057_CDS 904 1000 776 1025 PF05116.13 S6PP Family 113 205 247 42.5 5.4e-11 1 CL0137
Cotton_A_32413_CDS 1 77 1 77 PF00238.19 Ribosomal_L14 Domain 1 77 122 87.2 8.3e-25 1 No_clan
Cotton_A_26447_CDS 12 99 12 99 PF01749.20 IBB Family 1 90 90 88.1 4e-25 1 CL0020
Cotton_A_26447_CDS 110 150 109 150 PF00514.23 Arm Repeat 2 41 41 40.8 1.4e-10 1 CL0020
Cotton_A_26447_CDS 153 191 152 192 PF00514.23 Arm Repeat 2 40 41 44.0 1.4e-11 1 CL0020
Cotton_A_26447_CDS 194 235 194 235 PF00514.23 Arm Repeat 1 41 41 29.8 4.3e-07 1 CL0020
Cotton_A_26447_CDS 248 276 246 276 PF00514.23 Arm Repeat 13 41 41 29.9 3.9e-07 1 CL0020
Cotton_A_26447_CDS 279 317 278 318 PF00514.23 Arm Repeat 2 40 41 36.2 4.1e-09 1 CL0020
Cotton_A_26447_CDS 321 361 320 361 PF00514.23 Arm Repeat 2 41 41 35.2 8.5e-09 1 CL0020
Cotton_A_26447_CDS 363 402 363 403 PF00514.23 Arm Repeat 1 40 41 48.0 7.9e-13 1 CL0020
Cotton_A_26447_CDS 407 444 406 446 PF00514.23 Arm Repeat 2 39 41 31.5 1.2e-07 1 CL0020
Cotton_A_26447_CDS 461 505 461 515 PF16186.5 Arm_3 Family 1 45 53 72.5 1.5e-20 1 CL0020
Cotton_A_04310_CDS 5 154 5 155 PF00179.26 UQ_con Domain 1 139 140 163.1 2.9e-48 1 CL0208
Cotton_A_26245_CDS 43 389 40 391 PF03283.13 PAE Family 5 353 355 540.0 2.5e-162 1 CL0028
Cotton_A_10299_CDS 49 115 48 116 PF12265.8 CAF1C_H4-bd Family 2 66 67 52.0 6.4e-14 1 No_clan
Cotton_A_10299_CDS 268 301 264 301 PF00400.32 WD40 Repeat 7 38 38 24.1 4.7e-05 1 CL0186
Cotton_A_10299_CDS 310 344 306 345 PF00400.32 WD40 Repeat 5 37 38 13.9 0.078 1 CL0186
Cotton_A_10299_CDS 356 392 353 392 PF00400.32 WD40 Repeat 4 38 38 15.2 0.03 1 CL0186
Cotton_A_01848_CDS 63 124 35 124 PF02225.22 PA Family 28 89 89 31.9 9.6e-08 1 CL0364
Cotton_A_01848_CDS 215 258 214 258 PF13639.6 zf-RING_2 Domain 2 44 44 44.8 1.1e-11 1 CL0229
Cotton_A_18545_CDS 19 57 17 58 PF16860.5 CX9C Domain 5 43 44 39.6 3.7e-10 1 CL0351
Cotton_A_10767_CDS 40 386 9 406 PF00082.22 Peptidase_S8 Domain 49 287 298 147.9 3.6e-43 1 No_clan
Cotton_A_10767_CDS 458 563 458 564 PF17766.1 fn3_6 Domain 1 98 99 77.1 9.1e-22 1 CL0159
Cotton_A_29485_CDS 297 484 294 486 PF03141.16 Methyltransf_29 Family 333 504 506 180.5 4.6e-53 1 CL0063
Cotton_A_37692_CDS 1 122 1 122 PF00238.19 Ribosomal_L14 Domain 1 122 122 171.4 7.1e-51 1 No_clan
Cotton_A_31546_CDS 77 136 75 137 PF00013.29 KH_1 Domain 3 65 66 39.7 3.2e-10 1 CL0007
Cotton_A_03547_CDS 277 473 275 501 PF01433.20 Peptidase_M1 Domain 3 198 218 34.8 1.2e-08 1 CL0126
Cotton_A_32277_CDS 141 188 124 196 PF00694.19 Aconitase_C Domain 75 122 131 65.1 7.4e-18 1 CL0364
Cotton_A_22337_CDS 408 814 408 814 PF00962.22 A_deaminase Domain 1 328 328 425.7 1.3e-127 1 CL0034
Cotton_A_17944_CDS 17 123 16 126 PF01412.18 ArfGap Domain 2 114 117 140.2 3e-41 1 No_clan
Cotton_A_27485_CDS 1 68 1 68 PF16205.5 Ribosomal_S17_N Family 2 69 69 107.8 2.6e-31 1 No_clan
Cotton_A_27485_CDS 70 139 70 139 PF00366.20 Ribosomal_S17 Domain 1 68 68 81.5 3.4e-23 1 CL0021
Cotton_A_32099_CDS 12 56 10 56 PF00471.20 Ribosomal_L33 Family 3 47 47 43.9 2.3e-11 1 CL0167
Cotton_A_22226_CDS 55 111 55 111 PF00282.19 Pyridoxal_deC Domain 1 57 375 44.8 6.8e-12 1 CL0061
Cotton_A_08447_CDS 535 649 534 653 PF00145.17 DNA_methylase Domain 2 99 335 42.8 4.1e-11 1 CL0063
Cotton_A_00021_CDS 7 75 6 88 PF00248.21 Aldo_ket_red Domain 2 69 294 29.7 3.5e-07 1 No_clan
Cotton_A_00021_CDS 89 148 82 159 PF00248.21 Aldo_ket_red Domain 121 182 294 37.1 1.9e-09 1 No_clan
Cotton_A_08913_CDS 16 137 14 142 PF04857.20 CAF1 Family 3 125 319 35.1 7.7e-09 1 CL0219
Cotton_A_35456_CDS 164 250 158 251 PF03004.14 Transposase_24 Family 49 141 142 45.9 5.7e-12 1 No_clan
Cotton_A_32262_CDS 139 421 80 428 PF00295.17 Glyco_hydro_28 Domain 51 320 325 142.5 1.5e-41 1 CL0268
Cotton_A_36649_CDS 7 41 7 41 PF08880.11 QLQ Domain 1 35 35 58.5 3.8e-16 1 No_clan
Cotton_A_36649_CDS 69 111 69 111 PF08879.10 WRC Domain 1 43 43 75.4 2.1e-21 1 No_clan
Cotton_A_04896_CDS 56 294 54 296 PF12146.8 Hydrolase_4 Family 3 237 239 191.7 1.2e-56 1 CL0028
Cotton_A_10337_CDS 6 101 1 107 PF00083.24 Sugar_tr Family 30 119 452 49.8 2.3e-13 1 CL0015
Cotton_A_09733_CDS 194 245 194 245 PF00249.31 Myb_DNA-binding Domain 1 46 46 25.3 1.3e-05 1 CL0123
Cotton_A_06327_CDS 1128 1212 1091 1224 PF12584.8 TRAPPC10 Family 29 117 156 43.9 1.9e-11 1 CL0212
Cotton_A_12625_CDS 18 102 2 103 PF10187.9 Nefa_Nip30_N Domain 22 104 105 63.7 1.7e-17 1 No_clan
Cotton_A_12773_CDS 30 134 29 134 PF13947.6 GUB_WAK_bind Domain 2 106 106 92.8 2e-26 1 No_clan
Cotton_A_12773_CDS 289 324 289 329 PF07645.15 EGF_CA Domain 1 37 42 28.8 1e-06 1 CL0001
Cotton_A_12773_CDS 414 682 414 684 PF00069.25 Pkinase Domain 1 260 264 171.5 2.2e-50 1 CL0016
Cotton_A_33817_CDS 23 292 22 295 PF00069.25 Pkinase Domain 2 259 264 151.2 3.4e-44 1 CL0016
Cotton_A_20595_CDS 227 348 227 348 PF12576.8 DUF3754 Family 1 137 137 81.2 6.5e-23 1 No_clan
Cotton_A_08192_CDS 466 521 454 522 PF14844.6 PH_BEACH Domain 43 99 100 34.9 1.2e-08 1 CL0266
Cotton_A_08192_CDS 560 839 560 839 PF02138.18 Beach Family 1 276 276 403.4 4.6e-121 1 No_clan
Cotton_A_08192_CDS 923 952 913 953 PF00400.32 WD40 Repeat 10 37 38 14.3 0.059 1 CL0186
Cotton_A_08192_CDS 969 1003 967 1003 PF00400.32 WD40 Repeat 5 38 38 25.3 2e-05 1 CL0186
Cotton_A_08089_CDS 131 205 130 205 PF04969.16 CS Domain 2 76 76 73.0 3.1e-20 1 CL0190
Cotton_A_03976_CDS 18 102 15 104 PF03083.16 MtN3_slv Family 4 85 87 71.8 3.6e-20 1 CL0141
Cotton_A_03976_CDS 138 220 137 223 PF03083.16 MtN3_slv Family 2 84 87 79.5 1.4e-22 1 CL0141
Cotton_A_17260_CDS 2 240 1 240 PF03321.13 GH3 Family 135 361 527 249.0 1e-73 1 CL0378
Cotton_A_24254_CDS 25 343 25 346 PF00332.18 Glyco_hydro_17 Domain 1 310 313 253.0 4.9e-75 1 CL0058
Cotton_A_24254_CDS 360 431 359 431 PF07983.13 X8 Domain 2 76 76 71.1 9.3e-20 1 No_clan
Cotton_A_36608_CDS 3 144 2 153 PF05903.14 Peptidase_C97 Domain 2 139 151 122.7 1.1e-35 1 CL0125
Cotton_A_21205_CDS 20 190 20 191 PF00071.22 Ras Domain 1 161 162 179.6 3.4e-53 1 CL0023
Cotton_A_38028_CDS 79 352 75 352 PF07714.17 Pkinase_Tyr Domain 5 259 259 154.0 4.3e-45 1 CL0016
Cotton_A_16184_CDS 35 365 35 365 PF00657.22 Lipase_GDSL Family 1 200 200 89.2 3.4e-25 1 CL0264
Cotton_A_13384_CDS 15 173 14 174 PF00929.24 RNase_T Family 2 164 165 79.6 3.8e-22 1 CL0219
Cotton_A_30180_CDS 75 466 75 499 PF13520.6 AA_permease_2 Family 1 395 425 157.3 5.2e-46 1 CL0062
Cotton_A_30180_CDS 509 558 509 559 PF13906.6 AA_permease_C Domain 1 50 51 57.6 9.8e-16 1 CL0062
Cotton_A_02519_CDS 236 687 226 699 PF00202.21 Aminotran_3 Domain 14 385 406 160.2 5.9e-47 1 CL0061
Cotton_A_03997_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 56.6 2.1e-15 1 CL0123
Cotton_A_03997_CDS 67 111 67 112 PF00249.31 Myb_DNA-binding Domain 1 45 46 55.8 3.7e-15 1 CL0123
Cotton_A_25128_CDS 19 120 18 122 PF00466.20 Ribosomal_L10 Family 2 98 100 67.1 1.2e-18 1 No_clan
Cotton_A_25128_CDS 126 196 126 196 PF17777.1 RL10P_insert Domain 1 71 71 81.9 2.4e-23 1 No_clan
Cotton_A_37471_CDS 94 598 94 598 PF03141.16 Methyltransf_29 Family 1 506 506 731.0 6.1e-220 1 CL0063
Cotton_A_24823_CDS 78 109 77 109 PF06200.14 tify Domain 3 34 34 39.6 2.3e-10 1 No_clan
Cotton_A_24823_CDS 141 183 141 184 PF06203.14 CCT Motif 1 43 44 55.7 3.7e-15 1 CL0281
Cotton_A_24823_CDS 205 241 205 242 PF00320.27 GATA Domain 1 35 36 53.1 1.7e-14 1 CL0167
Cotton_A_11443_CDS 152 184 151 184 PF08238.12 Sel1 Repeat 2 36 38 12.4 0.2 1 CL0020
Cotton_A_11443_CDS 188 222 187 222 PF08238.12 Sel1 Repeat 2 38 38 29.0 1.2e-06 1 CL0020
Cotton_A_02978_CDS 27 345 25 356 PF00743.19 FMO-like Family 6 335 532 107.3 6.6e-31 1 CL0063
Cotton_A_38173_CDS 25 346 25 346 PF00225.23 Kinesin Domain 1 333 333 289.0 3.8e-86 1 CL0023
Cotton_A_14667_CDS 6 425 5 426 PF06792.11 UPF0261 Family 2 403 404 521.3 1.7e-156 1 No_clan
Cotton_A_14667_CDS 484 749 483 749 PF09370.10 PEP_hydrolase Domain 2 267 267 430.9 1.5e-129 1 CL0151
Cotton_A_17269_CDS 18 563 17 564 PF03321.13 GH3 Family 2 526 527 621.1 1.8e-186 1 CL0378
Cotton_A_01669_CDS 129 207 115 218 PF02362.21 B3 Family 11 90 101 54.6 7.8e-15 1 CL0405
Cotton_A_39345_CDS 11 358 11 358 PF00274.19 Glycolytic Domain 1 349 349 571.3 5.5e-172 1 CL0035
Cotton_A_19830_CDS 2 59 1 63 PF05832.12 DUF846 Family 22 79 139 80.4 1.3e-22 1 No_clan
Cotton_A_19830_CDS 62 101 58 101 PF05832.12 DUF846 Family 100 139 139 29.9 4.9e-07 1 No_clan
Cotton_A_12062_CDS 28 125 25 126 PF13947.6 GUB_WAK_bind Domain 4 105 106 37.6 2.9e-09 1 No_clan
Cotton_A_12062_CDS 348 620 345 624 PF00069.25 Pkinase Domain 4 259 264 161.8 1.9e-47 1 CL0016
Cotton_A_10440_CDS 8 172 7 177 PF00106.25 adh_short Domain 2 143 195 102.0 2.8e-29 1 CL0063
Cotton_A_17739_CDS 72 305 72 306 PF02358.16 Trehalose_PPase Family 1 232 233 215.7 4.7e-64 1 CL0137
Cotton_A_04763_CDS 163 206 161 206 PF08387.10 FBD Family 3 46 46 43.0 3.1e-11 1 No_clan
Cotton_A_38338_CDS 9 79 9 79 PF00076.22 RRM_1 Domain 1 70 70 75.8 1.7e-21 1 CL0221
Cotton_A_38338_CDS 152 216 151 219 PF14327.6 CSTF2_hinge Family 3 66 81 41.9 1.1e-10 1 No_clan
Cotton_A_38338_CDS 485 517 482 518 PF14304.6 CSTF_C Domain 8 40 41 38.3 7.4e-10 1 No_clan
Cotton_A_28957_CDS 15 58 15 59 PF16891.5 STPPase_N Family 1 47 48 65.1 5.5e-18 1 No_clan
Cotton_A_28957_CDS 62 252 60 255 PF00149.28 Metallophos Domain 3 201 204 147.3 8.3e-43 1 CL0163
Cotton_A_34331_CDS 72 349 71 350 PF00069.25 Pkinase Domain 7 263 264 175.4 1.4e-51 1 CL0016
Cotton_A_09429_CDS 345 466 344 466 PF09273.11 Rubis-subs-bind Domain 2 129 129 69.1 5.7e-19 1 No_clan
Cotton_A_27941_CDS 122 248 120 249 PF01529.20 DHHC Family 3 133 134 134.9 1.8e-39 1 No_clan
Cotton_A_06874_CDS 41 175 40 177 PF05903.14 Peptidase_C97 Domain 2 149 151 156.7 3.7e-46 1 CL0125
Cotton_A_19676_CDS 10 55 10 57 PF12937.7 F-box-like Domain 1 46 48 29.5 4.9e-07 1 CL0271
Cotton_A_19676_CDS 190 208 187 209 PF13516.6 LRR_6 Repeat 5 23 24 14.9 0.02 1 CL0022
Cotton_A_05164_CDS 68 641 67 641 PF02705.16 K_trans Family 2 534 534 622.2 6.9e-187 1 CL0062
Cotton_A_13162_CDS 11 254 10 254 PF02190.16 LON_substr_bdg Family 2 208 208 78.3 7.3e-22 1 CL0178
Cotton_A_13162_CDS 405 522 405 527 PF00004.29 AAA Domain 1 126 132 55.8 6.2e-15 1 CL0023
Cotton_A_13162_CDS 651 857 650 859 PF05362.13 Lon_C Domain 2 203 205 251.7 4.4e-75 1 CL0329
Cotton_A_40804_CDS 90 359 85 361 PF00069.25 Pkinase Domain 6 259 264 151.4 2.9e-44 1 CL0016
Cotton_A_05863_CDS 150 192 147 195 PF00536.30 SAM_1 Domain 5 47 64 35.6 9.5e-09 1 CL0003
Cotton_A_05863_CDS 243 273 241 273 PF00627.31 UBA Domain 8 37 37 23.4 4.1e-05 1 CL0214
Cotton_A_05863_CDS 442 512 440 518 PF09409.10 PUB Domain 3 75 82 82.0 2.2e-23 1 No_clan
Cotton_A_25095_CDS 27 125 25 126 PF13947.6 GUB_WAK_bind Domain 3 105 106 40.6 3.5e-10 1 No_clan
Cotton_A_25095_CDS 345 616 342 617 PF07714.17 Pkinase_Tyr Domain 4 258 259 157.9 2.7e-46 1 CL0016
Cotton_A_40005_CDS 75 125 75 125 PF13041.6 PPR_2 Repeat 1 49 50 34.0 2.5e-08 1 CL0020
Cotton_A_40005_CDS 197 237 196 243 PF13041.6 PPR_2 Repeat 2 42 50 34.7 1.5e-08 1 CL0020
Cotton_A_40005_CDS 303 331 302 332 PF01535.20 PPR Family 2 30 31 15.7 0.013 1 CL0020
Cotton_A_40005_CDS 375 400 373 402 PF01535.20 PPR Family 4 29 31 9.4 1.3 1 CL0020
Cotton_A_40005_CDS 403 433 403 433 PF01535.20 PPR Family 1 31 31 24.2 2.6e-05 1 CL0020
Cotton_A_40005_CDS 503 549 502 550 PF13041.6 PPR_2 Repeat 2 48 50 40.4 2.5e-10 1 CL0020
Cotton_A_40005_CDS 603 650 603 652 PF13041.6 PPR_2 Repeat 1 48 50 35.7 7.3e-09 1 CL0020
Cotton_A_13609_CDS 3 104 1 114 PF01477.23 PLAT Domain 12 107 117 37.1 3.8e-09 1 CL0321
Cotton_A_06871_CDS 134 394 131 397 PF00069.25 Pkinase Domain 4 258 264 179.7 6.8e-53 1 CL0016
Cotton_A_33077_CDS 42 112 42 112 PF00076.22 RRM_1 Domain 1 70 70 62.6 2.2e-17 1 CL0221
Cotton_A_33077_CDS 130 197 130 198 PF00076.22 RRM_1 Domain 1 68 70 79.7 1.1e-22 1 CL0221
Cotton_A_33077_CDS 221 289 221 289 PF00076.22 RRM_1 Domain 1 69 70 81.2 3.6e-23 1 CL0221
Cotton_A_33077_CDS 324 392 324 393 PF00076.22 RRM_1 Domain 1 69 70 67.2 8e-19 1 CL0221
Cotton_A_33077_CDS 559 625 558 625 PF00658.18 PABP Family 2 68 68 88.7 2e-25 1 No_clan
Cotton_A_18867_CDS 124 365 109 379 PF00481.21 PP2C Family 24 248 258 121.7 4e-35 1 CL0238
Cotton_A_18867_CDS 499 590 498 591 PF00027.29 cNMP_binding Domain 2 88 89 66.6 1.6e-18 1 CL0029
Cotton_A_18867_CDS 625 729 624 731 PF00027.29 cNMP_binding Domain 2 85 89 28.9 8.6e-07 1 CL0029
Cotton_A_18867_CDS 787 1025 781 1025 PF00069.25 Pkinase Domain 17 264 264 116.8 1.1e-33 1 CL0016
Cotton_A_22380_CDS 504 542 504 543 PF00514.23 Arm Repeat 2 40 41 24.1 2.5e-05 1 CL0020
Cotton_A_25050_CDS 12 135 12 135 PF02365.15 NAM Family 1 126 126 127.1 7.2e-37 1 No_clan
Cotton_A_31351_CDS 27 98 27 98 PF07983.13 X8 Domain 1 76 76 79.9 1.7e-22 1 No_clan
Cotton_A_35628_CDS 2 71 1 73 PF04377.15 ATE_C Family 12 77 134 52.0 1.1e-13 1 CL0257
Cotton_A_17220_CDS 1 410 1 425 PF00996.18 GDI Family 1 402 436 690.4 7.4e-208 1 CL0063
Cotton_A_17220_CDS 493 523 483 526 PF00996.18 GDI Family 402 432 436 27.6 1e-06 1 CL0063
Cotton_A_33919_CDS 35 444 35 458 PF00067.22 p450 Domain 1 442 463 209.3 9.2e-62 1 No_clan
Cotton_A_18927_CDS 53 591 53 592 PF02990.16 EMP70 Family 1 518 519 742.5 2.4e-223 1 No_clan
Cotton_A_26808_CDS 67 146 64 147 PF14547.6 Hydrophob_seed Domain 5 84 85 74.1 7.8e-21 1 CL0482
Cotton_A_33351_CDS 38 191 38 192 PF03018.14 Dirigent Family 1 147 148 134.4 2.7e-39 1 CL0650
Cotton_A_06688_CDS 99 154 99 154 PF08381.11 BRX Domain 1 56 56 100.1 3e-29 1 No_clan
Cotton_A_35041_CDS 241 364 241 365 PF07738.13 Sad1_UNC Family 1 131 132 113.2 8.2e-33 1 CL0202
Cotton_A_05241_CDS 79 154 78 155 PF04182.12 B-block_TFIIIC Family 2 74 75 62.3 3.5e-17 1 CL0123
Cotton_A_23282_CDS 158 307 158 307 PF01590.26 GAF Domain 1 133 133 59.5 5e-16 1 CL0161
Cotton_A_23282_CDS 344 407 343 408 PF00512.25 HisKA Domain 2 66 67 55.1 5.8e-15 1 CL0025
Cotton_A_23282_CDS 455 582 455 584 PF02518.26 HATPase_c Domain 1 110 112 97.6 5.8e-28 1 CL0025
Cotton_A_09694_CDS 57 109 55 118 PF00403.26 HMA Domain 3 54 62 46.8 3e-12 1 No_clan
Cotton_A_09694_CDS 157 208 154 213 PF00403.26 HMA Domain 3 58 62 48.8 7.3e-13 1 No_clan
Cotton_A_00849_CDS 28 103 27 105 PF03330.18 DPBB_1 Domain 2 81 83 44.8 1.1e-11 1 CL0199
Cotton_A_15843_CDS 83 141 83 141 PF13637.6 Ank_4 Repeat 1 55 55 33.7 3.9e-08 1 CL0465
Cotton_A_15843_CDS 267 287 264 288 PF00642.24 zf-CCCH Family 5 26 27 24.2 2.2e-05 1 CL0537
Cotton_A_30271_CDS 141 351 141 355 PF11744.8 ALMT Family 131 345 469 250.3 3.5e-74 1 CL0307
Cotton_A_09146_CDS 32 230 32 230 PF01027.20 Bax1-I Family 1 207 207 114.0 8.2e-33 1 CL0453
Cotton_A_15961_CDS 818 915 818 931 PF03468.14 XS Domain 1 96 113 61.9 6.3e-17 1 CL0221
Cotton_A_26548_CDS 111 146 111 153 PF07645.15 EGF_CA Domain 1 35 42 37.6 1.9e-09 1 CL0001
Cotton_A_11760_CDS 103 159 102 160 PF02701.15 zf-Dof Family 2 58 59 106.3 6.3e-31 1 No_clan
Cotton_A_01613_CDS 26 71 26 84 PF13450.6 NAD_binding_8 Domain 1 45 68 37.7 1.7e-09 1 CL0063
Cotton_A_28682_CDS 65 238 65 238 PF00504.21 Chloroa_b-bind Family 1 161 161 155.5 1.6e-45 1 No_clan
Cotton_A_32160_CDS 209 465 209 465 PF00069.25 Pkinase Domain 1 264 264 250.7 1.5e-74 1 CL0016
Cotton_A_21359_CDS 31 117 31 118 PF01397.21 Terpene_synth Domain 1 104 192 72.2 4.5e-20 1 No_clan
Cotton_A_21011_CDS 95 240 94 243 PF10358.9 NT-C2 Family 2 141 146 51.6 8.1e-14 1 CL0154
Cotton_A_29206_CDS 39 148 34 167 PF00790.19 VHS Domain 8 120 141 76.8 1.4e-21 1 CL0009
Cotton_A_29206_CDS 233 306 233 308 PF03127.14 GAT Domain 1 75 77 53.3 2.6e-14 1 No_clan
Cotton_A_17199_CDS 10 57 10 57 PF00319.18 SRF-TF Domain 1 48 48 88.0 2.1e-25 1 No_clan
Cotton_A_27839_CDS 166 454 112 460 PF00295.17 Glyco_hydro_28 Domain 46 319 325 162.5 1.3e-47 1 CL0268
Cotton_A_33889_CDS 19 79 19 83 PF01918.21 Alba Family 1 62 67 66.3 1.5e-18 1 CL0441
Cotton_A_27345_CDS 35 215 35 216 PF00350.23 Dynamin_N Domain 1 167 168 103.3 1.4e-29 1 CL0023
Cotton_A_31477_CDS 2 114 1 116 PF07732.15 Cu-oxidase_3 Domain 3 117 119 145.2 8e-43 1 CL0026
Cotton_A_31477_CDS 128 277 127 278 PF00394.22 Cu-oxidase Domain 3 158 159 132.8 1.1e-38 1 CL0026
Cotton_A_31477_CDS 384 516 383 517 PF07731.14 Cu-oxidase_2 Domain 2 135 137 137.4 2.5e-40 1 CL0026
Cotton_A_12907_CDS 68 306 58 306 PF07714.17 Pkinase_Tyr Domain 14 259 259 92.5 2.6e-26 1 CL0016
Cotton_A_27852_CDS 62 138 11 139 PF02519.14 Auxin_inducible Family 17 89 90 94.4 3.6e-27 1 No_clan
Cotton_A_05551_CDS 236 263 222 263 PF12552.8 DUF3741 Family 18 45 45 26.5 4.5e-06 1 No_clan
Cotton_A_05551_CDS 647 808 647 808 PF14309.6 DUF4378 Family 1 165 165 119.0 2.6e-34 1 No_clan
Cotton_A_22247_CDS 21 215 21 217 PF04928.17 PAP_central Domain 1 102 248 75.8 2.6e-21 1 No_clan
Cotton_A_22247_CDS 94 170 82 176 PF01909.23 NTP_transf_2 Family 14 89 95 41.8 9.9e-11 1 CL0260
Cotton_A_22247_CDS 216 244 214 248 PF04928.17 PAP_central Domain 124 152 248 43.0 2.6e-11 1 No_clan
Cotton_A_22247_CDS 262 320 261 326 PF04926.15 PAP_RNA-bind Domain 2 59 171 44.4 1.3e-11 1 No_clan
Cotton_A_03028_CDS 3 132 1 136 PF01255.19 Prenyltransf Family 109 218 224 111.2 5.2e-32 1 No_clan
Cotton_A_15462_CDS 82 179 48 179 PF03556.15 Cullin_binding Family 13 120 120 100.6 7.5e-29 1 CL0220
Cotton_A_33443_CDS 17 185 17 186 PF14299.6 PP2 Family 1 145 146 175.1 8.2e-52 1 No_clan
Cotton_A_24983_CDS 157 339 157 341 PF00005.27 ABC_tran Domain 1 135 137 61.3 1.4e-16 1 CL0023
Cotton_A_24983_CDS 492 619 491 625 PF01061.24 ABC2_membrane Family 2 128 210 56.4 2.7e-15 1 CL0181
Cotton_A_39068_CDS 3 79 1 79 PF17917.1 RT_RNaseH Domain 29 105 105 93.1 1.1e-26 1 CL0219
Cotton_A_24339_CDS 29 298 22 299 PF00450.22 Peptidase_S10 Domain 161 418 419 137.6 7.7e-40 1 CL0028
Cotton_A_14618_CDS 5 50 4 53 PF00646.33 F-box Domain 2 45 48 23.6 3.5e-05 1 CL0271
Cotton_A_26185_CDS 6 222 5 226 PF00009.27 GTP_EFTU Domain 2 190 194 181.9 9.7e-54 1 CL0023
Cotton_A_26185_CDS 248 313 248 315 PF03144.25 GTP_EFTU_D2 Domain 1 72 74 51.8 7.7e-14 1 CL0575
Cotton_A_26185_CDS 322 429 321 430 PF03143.17 GTP_EFTU_D3 Domain 2 111 112 132.0 1.1e-38 1 No_clan
Cotton_A_19138_CDS 17 433 17 437 PF01373.17 Glyco_hydro_14 Domain 1 398 402 405.9 1.7e-121 1 CL0058
Cotton_A_03904_CDS 69 271 34 271 PF04720.12 PDDEXK_6 Family 22 221 221 257.0 1.7e-76 1 No_clan
Cotton_A_13673_CDS 89 231 87 238 PF00106.25 adh_short Domain 3 141 195 73.0 2.1e-20 1 CL0063
Cotton_A_30918_CDS 30 243 30 243 PF00314.17 Thaumatin Domain 1 214 214 257.9 6.6e-77 1 CL0293
Cotton_A_18226_CDS 104 147 103 147 PF13639.6 zf-RING_2 Domain 2 44 44 50.1 2.6e-13 1 CL0229
Cotton_A_31451_CDS 248 455 248 460 PF14868.6 DUF4487 Family 1 173 552 151.7 3.3e-44 1 No_clan
Cotton_A_15670_CDS 61 274 59 275 PF04755.12 PAP_fibrillin Family 3 197 198 81.0 1.1e-22 1 No_clan
Cotton_A_20622_CDS 63 248 62 257 PF00117.28 GATase Domain 2 175 190 76.1 2.9e-21 1 CL0014
Cotton_A_20622_CDS 278 569 278 570 PF00977.21 His_biosynth Family 1 228 229 159.0 1.2e-46 1 CL0036
Cotton_A_35678_CDS 48 119 47 119 PF15044.6 CLU_N Family 2 79 79 32.1 1.1e-07 1 No_clan
Cotton_A_35678_CDS 705 847 704 848 PF12807.7 eIF3_p135 Family 2 175 176 74.9 7.6e-21 1 No_clan
Cotton_A_35678_CDS 917 987 916 988 PF13424.6 TPR_12 Repeat 2 72 77 46.4 3.7e-12 1 CL0020
Cotton_A_35678_CDS 1001 1075 1000 1076 PF13424.6 TPR_12 Repeat 2 76 77 41.9 8.8e-11 1 CL0020
Cotton_A_08031_CDS 24 99 24 100 PF03134.19 TB2_DP1_HVA22 Family 1 76 77 96.0 9.5e-28 1 No_clan
Cotton_A_36806_CDS 13 71 13 71 PF00226.31 DnaJ Domain 1 63 63 81.4 3.7e-23 1 CL0392
Cotton_A_36806_CDS 122 343 121 343 PF01556.18 DnaJ_C Domain 2 148 148 144.1 3.3e-42 1 No_clan
Cotton_A_36806_CDS 148 214 148 214 PF00684.19 DnaJ_CXXCXGXG Domain 1 67 67 56.0 3.8e-15 1 No_clan
Cotton_A_12499_CDS 13 67 11 67 PF00415.18 RCC1 Repeat 4 50 50 31.2 2.5e-07 1 CL0186
Cotton_A_12499_CDS 70 119 70 119 PF00415.18 RCC1 Repeat 1 50 50 45.2 1.1e-11 1 CL0186
Cotton_A_12499_CDS 176 233 175 233 PF00415.18 RCC1 Repeat 2 50 50 34.6 2.1e-08 1 CL0186
Cotton_A_12499_CDS 236 288 236 288 PF00415.18 RCC1 Repeat 1 50 50 47.7 1.7e-12 1 CL0186
Cotton_A_12499_CDS 291 347 291 348 PF00415.18 RCC1 Repeat 1 49 50 37.7 2.3e-09 1 CL0186
Cotton_A_31824_CDS 65 116 65 117 PF09713.10 A_thal_3526 Domain 1 52 53 91.8 2.4e-26 1 No_clan
Cotton_A_07488_CDS 267 294 265 294 PF01535.20 PPR Family 4 31 31 16.2 0.0092 1 CL0020
Cotton_A_07488_CDS 296 342 296 344 PF13041.6 PPR_2 Repeat 1 47 50 45.6 5.7e-12 1 CL0020
Cotton_A_07488_CDS 366 412 366 415 PF13041.6 PPR_2 Repeat 1 47 50 51.1 1.1e-13 1 CL0020
Cotton_A_07488_CDS 422 480 421 483 PF13812.6 PPR_3 Repeat 2 60 63 25.3 1.2e-05 1 CL0020
Cotton_A_31038_CDS 66 168 64 168 PF01521.20 Fe-S_biosyn Family 3 111 111 80.8 7.7e-23 1 No_clan
Cotton_A_16213_CDS 43 151 42 151 PF00565.17 SNase Domain 2 108 108 37.9 1.9e-09 1 CL0049
Cotton_A_16213_CDS 275 366 250 367 PF00565.17 SNase Domain 20 107 108 43.5 3.7e-11 1 CL0049
Cotton_A_16213_CDS 603 701 601 701 PF00565.17 SNase Domain 3 108 108 51.1 1.6e-13 1 CL0049
Cotton_A_16213_CDS 717 840 714 841 PF00567.24 TUDOR Domain 4 121 122 67.4 1.1e-18 1 CL0049
Cotton_A_16213_CDS 849 952 837 953 PF00565.17 SNase Domain 20 107 108 38.0 1.8e-09 1 CL0049
Cotton_A_10983_CDS 113 207 110 208 PF00011.21 HSP20 Family 4 87 102 27.6 2.5e-06 1 CL0190
Cotton_A_14671_CDS 31 76 29 90 PF00170.21 bZIP_1 Family 5 50 64 39.7 3.9e-10 1 CL0018
Cotton_A_08638_CDS 3 235 3 239 PF01370.21 Epimerase Family 1 237 241 95.2 4e-27 1 CL0063
Cotton_A_05744_CDS 60 156 60 169 PF14226.6 DIOX_N Family 1 99 118 71.7 8.7e-20 1 CL0029
Cotton_A_05744_CDS 215 310 211 310 PF03171.20 2OG-FeII_Oxy Domain 7 101 101 95.6 2.1e-27 1 CL0029
Cotton_A_38179_CDS 5 62 3 62 PF06624.12 RAMP4 Family 3 60 60 90.2 6.4e-26 1 No_clan
Cotton_A_17811_CDS 241 422 240 427 PF02902.19 Peptidase_C48 Domain 2 208 216 155.4 1.8e-45 1 CL0125
Cotton_A_32225_CDS 1 52 1 52 PF00006.25 ATP-synt_ab Domain 162 213 213 56.2 3.6e-15 1 CL0023
Cotton_A_32225_CDS 59 84 59 84 PF00306.27 ATP-synt_ab_C Domain 1 26 126 30.0 5.3e-07 1 No_clan
Cotton_A_27773_CDS 81 250 78 252 PF13439.6 Glyco_transf_4 Domain 4 168 170 62.6 4.4e-17 1 CL0113
Cotton_A_27773_CDS 276 412 274 415 PF13692.6 Glyco_trans_1_4 Domain 3 131 134 53.3 3.7e-14 1 CL0113
Cotton_A_21929_CDS 39 121 11 125 PF00067.22 p450 Domain 33 115 463 25.5 5.1e-06 1 No_clan
Cotton_A_17756_CDS 33 395 31 395 PF00232.18 Glyco_hydro_1 Domain 3 362 453 404.4 4.4e-121 1 CL0058
Cotton_A_03916_CDS 56 104 56 115 PF03110.14 SBP Domain 1 49 75 67.8 7.5e-19 1 No_clan
Cotton_A_31349_CDS 80 159 46 165 PF00067.22 p450 Domain 26 109 463 30.6 1.5e-07 1 No_clan
Cotton_A_10433_CDS 125 382 124 382 PF00069.25 Pkinase Domain 2 264 264 247.7 1.3e-73 1 CL0016
Cotton_A_10433_CDS 430 490 402 491 PF13499.6 EF-hand_7 Domain 4 70 71 42.7 5.6e-11 1 CL0220
Cotton_A_10433_CDS 500 561 499 561 PF13499.6 EF-hand_7 Domain 2 71 71 52.2 6.2e-14 1 CL0220
Cotton_A_14482_CDS 53 84 51 97 PF00646.33 F-box Domain 3 34 48 29.2 5.9e-07 1 CL0271
Cotton_A_16164_CDS 9 182 8 182 PF01145.25 Band_7 Family 2 178 178 103.3 1.5e-29 1 CL0433
Cotton_A_29819_CDS 10 54 9 57 PF00249.31 Myb_DNA-binding Domain 2 42 46 29.8 5.1e-07 1 CL0123
Cotton_A_29819_CDS 119 163 119 164 PF00249.31 Myb_DNA-binding Domain 3 45 46 42.2 6.7e-11 1 CL0123
Cotton_A_21927_CDS 77 177 77 179 PF12680.7 SnoaL_2 Domain 1 98 102 51.7 1.1e-13 1 CL0051
Cotton_A_07942_CDS 131 364 119 378 PF00931.22 NB-ARC Domain 13 222 252 71.7 5.1e-20 1 CL0023
Cotton_A_14223_CDS 133 241 119 243 PF00069.25 Pkinase Domain 156 260 264 34.9 9.9e-09 1 CL0016
Cotton_A_25940_CDS 24 54 24 54 PF01535.20 PPR Family 1 31 31 40.1 2.1e-10 1 CL0020
Cotton_A_25940_CDS 55 99 54 101 PF13041.6 PPR_2 Repeat 4 48 50 38.0 1.4e-09 1 CL0020
Cotton_A_25940_CDS 128 155 125 155 PF01535.20 PPR Family 4 31 31 16.8 0.0057 1 CL0020
Cotton_A_25940_CDS 156 181 156 184 PF01535.20 PPR Family 1 26 31 29.2 6.6e-07 1 CL0020
Cotton_A_25940_CDS 189 219 189 219 PF01535.20 PPR Family 1 31 31 23.9 3.2e-05 1 CL0020
Cotton_A_25940_CDS 319 365 318 367 PF13041.6 PPR_2 Repeat 2 48 50 35.4 9.1e-09 1 CL0020
Cotton_A_25940_CDS 395 418 395 419 PF01535.20 PPR Family 5 28 31 11.4 0.31 1 CL0020
Cotton_A_25940_CDS 426 452 424 454 PF01535.20 PPR Family 3 29 31 12.1 0.19 1 CL0020
Cotton_A_25940_CDS 461 487 460 488 PF01535.20 PPR Family 2 28 31 15.6 0.014 1 CL0020
Cotton_A_25940_CDS 498 522 496 524 PF01535.20 PPR Family 3 27 31 16.5 0.007 1 CL0020
Cotton_A_25940_CDS 648 700 648 708 PF16212.5 PhoLip_ATPase_C Family 1 52 249 70.9 1.3e-19 1 No_clan
Cotton_A_20203_CDS 14 90 14 96 PF13456.6 RVT_3 Domain 1 77 124 33.1 3.9e-08 1 CL0219
Cotton_A_08283_CDS 14 75 13 75 PF00462.24 Glutaredoxin Domain 2 60 60 45.2 7.9e-12 1 CL0172
Cotton_A_11392_CDS 29 165 29 165 PF13716.6 CRAL_TRIO_2 Domain 1 138 138 83.1 2e-23 1 CL0512
Cotton_A_19817_CDS 51 192 49 192 PF04043.15 PMEI Domain 3 154 154 41.6 1.5e-10 1 No_clan
Cotton_A_38345_CDS 70 248 67 249 PF17047.5 SMP_LBD Domain 4 179 180 57.4 1.2e-15 1 CL0648
Cotton_A_38345_CDS 263 366 262 366 PF00168.30 C2 Domain 2 103 103 71.5 5.8e-20 1 CL0154
Cotton_A_38345_CDS 441 534 441 543 PF00168.30 C2 Domain 1 93 103 84.9 4e-24 1 CL0154
Cotton_A_31550_CDS 332 371 327 372 PF00010.26 HLH Domain 10 52 53 26.6 4.2e-06 1 No_clan
Cotton_A_02272_CDS 196 266 195 267 PF07743.13 HSCB_C Domain 2 75 76 57.6 1.3e-15 1 No_clan
Cotton_A_25475_CDS 29 110 29 117 PF01190.17 Pollen_Ole_e_I Family 1 91 99 58.3 7.7e-16 1 CL0287
Cotton_A_40725_CDS 120 334 120 336 PF07002.16 Copine Family 1 216 218 252.8 2.3e-75 1 CL0128
Cotton_A_40725_CDS 422 463 421 464 PF13920.6 zf-C3HC4_3 Domain 2 49 50 33.0 4e-08 1 CL0229
Cotton_A_01826_CDS 96 559 92 559 PF00939.19 Na_sulph_symp Family 6 472 472 464.7 3.9e-139 1 CL0182
Cotton_A_17991_CDS 85 166 83 166 PF03330.18 DPBB_1 Domain 3 83 83 56.9 1.8e-15 1 CL0199
Cotton_A_17991_CDS 178 213 178 234 PF01357.21 Pollen_allerg_1 Domain 1 35 80 32.3 7.7e-08 1 CL0159
Cotton_A_11394_CDS 40 362 39 362 PF00180.20 Iso_dh Domain 2 348 348 264.3 1.6e-78 1 CL0270
Cotton_A_18401_CDS 8 120 2 121 PF17781.1 RPN1_RPN2_N Domain 196 308 309 93.3 1.8e-26 1 No_clan
Cotton_A_21647_CDS 60 131 60 131 PF04640.14 PLATZ Family 1 82 82 98.1 3.3e-28 1 No_clan
Cotton_A_13814_CDS 1 122 1 122 PF00238.19 Ribosomal_L14 Domain 1 122 122 165.4 5.1e-49 1 No_clan
Cotton_A_14110_CDS 240 261 239 268 PF13606.6 Ank_3 Repeat 2 23 31 17.3 0.0047 1 CL0465
Cotton_A_14110_CDS 294 348 293 348 PF13637.6 Ank_4 Repeat 2 55 55 33.8 3.6e-08 1 CL0465
Cotton_A_14110_CDS 382 437 365 454 PF12796.7 Ank_2 Repeat 18 67 83 30.5 3.9e-07 1 CL0465
Cotton_A_14110_CDS 546 662 545 663 PF13962.6 PGG Domain 2 115 116 94.9 2.6e-27 1 No_clan
Cotton_A_30463_CDS 42 490 38 508 PF00067.22 p450 Domain 5 442 463 303.5 2.4e-90 1 No_clan
Cotton_A_13489_CDS 13 54 8 54 PF05922.16 Inhibitor_I9 Domain 41 82 82 45.9 6.8e-12 1 CL0570
Cotton_A_13489_CDS 75 525 74 525 PF00082.22 Peptidase_S8 Domain 2 298 298 147.9 3.7e-43 1 No_clan
Cotton_A_13489_CDS 580 675 580 676 PF17766.1 fn3_6 Domain 1 98 99 85.6 2e-24 1 CL0159
Cotton_A_00551_CDS 16 62 15 62 PF00319.18 SRF-TF Domain 2 48 48 83.4 5.7e-24 1 No_clan
Cotton_A_10909_CDS 9 56 8 56 PF04627.13 ATP-synt_Eps Family 2 49 49 85.0 2.4e-24 1 No_clan
Cotton_A_27372_CDS 100 262 99 267 PF03407.16 Nucleotid_trans Family 2 172 212 85.4 5.2e-24 1 CL0110
Cotton_A_15782_CDS 87 112 87 114 PF01535.20 PPR Family 4 29 31 14.3 0.036 1 CL0020
Cotton_A_15782_CDS 115 139 115 144 PF01535.20 PPR Family 1 25 31 10.1 0.82 1 CL0020
Cotton_A_15782_CDS 212 260 212 262 PF13041.6 PPR_2 Repeat 1 48 50 42.3 6.1e-11 1 CL0020
Cotton_A_15782_CDS 314 359 314 362 PF13041.6 PPR_2 Repeat 1 46 50 35.0 1.2e-08 1 CL0020
Cotton_A_15782_CDS 390 415 388 417 PF01535.20 PPR Family 4 29 31 17.8 0.0027 1 CL0020
Cotton_A_15782_CDS 416 462 415 463 PF13041.6 PPR_2 Repeat 2 48 50 42.2 6.7e-11 1 CL0020
Cotton_A_15782_CDS 516 563 516 565 PF13041.6 PPR_2 Repeat 1 48 50 38.1 1.3e-09 1 CL0020
Cotton_A_15782_CDS 591 615 590 617 PF01535.20 PPR Family 2 26 31 14.9 0.023 1 CL0020
Cotton_A_17648_CDS 30 295 30 296 PF02265.16 S1-P1_nuclease Domain 1 252 253 254.1 1.8e-75 1 CL0368
Cotton_A_22268_CDS 47 265 45 270 PF00931.22 NB-ARC Domain 3 230 252 166.7 5.3e-49 1 CL0023
Cotton_A_32311_CDS 103 166 102 166 PF00808.23 CBFD_NFYB_HMF Domain 2 65 65 75.6 2.7e-21 1 CL0012
Cotton_A_14586_CDS 38 218 38 219 PF00574.23 CLP_protease Domain 1 181 182 271.3 3.8e-81 1 CL0127
Cotton_A_17549_CDS 208 272 208 273 PF00076.22 RRM_1 Domain 1 69 70 42.4 4.6e-11 1 CL0221
Cotton_A_17549_CDS 293 358 293 358 PF00076.22 RRM_1 Domain 1 70 70 43.1 2.7e-11 1 CL0221
Cotton_A_17549_CDS 704 800 704 800 PF04059.12 RRM_2 Family 1 97 97 183.6 5.3e-55 1 CL0221
Cotton_A_29032_CDS 79 218 78 224 PF17911.1 Ski2_N Domain 2 129 135 50.8 1.4e-13 1 No_clan
Cotton_A_29032_CDS 355 501 353 503 PF00270.29 DEAD Domain 3 173 176 54.8 9.7e-15 1 CL0023
Cotton_A_35195_CDS 6 99 6 99 PF09177.11 Syntaxin-6_N Domain 1 99 99 77.3 1e-21 1 No_clan
Cotton_A_35195_CDS 188 239 187 239 PF05739.19 SNARE Family 2 53 53 38.1 1.1e-09 1 No_clan
Cotton_A_28261_CDS 16 200 11 202 PF16213.5 DCB Family 9 176 178 74.9 5.9e-21 1 No_clan
Cotton_A_28261_CDS 292 467 290 467 PF12783.7 Sec7_N Domain 3 158 158 119.4 1.3e-34 1 No_clan
Cotton_A_28261_CDS 577 759 576 759 PF01369.20 Sec7 Domain 2 183 183 243.8 9.5e-73 1 No_clan
Cotton_A_14169_CDS 198 514 198 515 PF00225.23 Kinesin Domain 1 332 333 320.7 9.2e-96 1 CL0023
Cotton_A_14680_CDS 25 157 25 192 PF00561.20 Abhydrolase_1 Domain 1 139 257 85.3 5.1e-24 1 CL0028
Cotton_A_30888_CDS 4 112 2 112 PF04043.15 PMEI Domain 36 154 154 32.1 1.3e-07 1 No_clan
Cotton_A_23437_CDS 39 359 39 359 PF00657.22 Lipase_GDSL Family 1 200 200 87.5 1.1e-24 1 CL0264
Cotton_A_03660_CDS 4 87 1 88 PF03083.16 MtN3_slv Family 4 86 87 79.6 1.3e-22 1 CL0141
Cotton_A_00635_CDS 7 135 7 136 PF04628.13 Sedlin_N Family 1 130 131 115.2 2.1e-33 1 CL0212
Cotton_A_35785_CDS 65 362 64 365 PF04756.13 OST3_OST6 Family 2 291 293 257.5 1.6e-76 1 CL0172
Cotton_A_05862_CDS 150 192 146 196 PF00536.30 SAM_1 Domain 5 47 64 37.8 1.9e-09 1 CL0003
Cotton_A_18664_CDS 23 605 22 605 PF02705.16 K_trans Family 2 534 534 646.0 4.1e-194 1 CL0062
Cotton_A_17700_CDS 89 186 88 187 PF01230.23 HIT Domain 2 97 98 98.3 3.3e-28 1 CL0265
Cotton_A_09131_CDS 64 121 62 123 PF01471.18 PG_binding_1 Domain 4 55 57 46.0 4.6e-12 1 CL0244
Cotton_A_09131_CDS 164 319 152 319 PF00413.24 Peptidase_M10 Domain 6 158 158 164.4 1.7e-48 1 CL0126
Cotton_A_27660_CDS 26 210 26 210 PF00445.18 Ribonuclease_T2 Domain 1 182 182 200.2 3.3e-59 1 No_clan
Cotton_A_21096_CDS 201 379 201 379 PF11891.8 RETICULATA-like Family 1 177 177 216.1 3.1e-64 1 No_clan
Cotton_A_09989_CDS 39 132 36 139 PF04535.12 DUF588 Domain 4 97 150 46.7 2.8e-12 1 CL0396
Cotton_A_23730_CDS 5 290 5 291 PF05653.14 Mg_trans_NIPA Family 1 294 295 412.0 1.1e-123 1 CL0184
Cotton_A_08862_CDS 52 254 52 259 PF03087.14 DUF241 Family 1 208 234 165.1 2.3e-48 1 CL0133
Cotton_A_27493_CDS 100 299 99 299 PF03407.16 Nucleotid_trans Family 2 212 212 179.0 1.2e-52 1 CL0110
Cotton_A_36295_CDS 30 69 29 70 PF08263.12 LRRNT_2 Family 2 40 41 41.2 1.5e-10 1 No_clan
Cotton_A_36295_CDS 446 728 436 729 PF00069.25 Pkinase Domain 14 260 264 108.7 3.2e-31 1 CL0016
Cotton_A_27674_CDS 37 353 37 353 PF00657.22 Lipase_GDSL Family 1 200 200 64.7 1.1e-17 1 CL0264
Cotton_A_38688_CDS 29 75 27 75 PF08699.10 ArgoL1 Domain 4 52 52 71.9 2.4e-20 1 No_clan
Cotton_A_38688_CDS 82 205 80 208 PF02170.22 PAZ Domain 3 134 137 95.8 1.9e-27 1 CL0638
Cotton_A_38688_CDS 218 263 217 263 PF16488.5 ArgoL2 Family 2 47 47 44.0 2.1e-11 1 No_clan
Cotton_A_38688_CDS 274 352 273 353 PF16487.5 ArgoMid Domain 2 83 84 35.9 6.9e-09 1 No_clan
Cotton_A_38688_CDS 394 547 393 554 PF02171.17 Piwi Family 54 210 302 120.1 1.1e-34 1 CL0219
Cotton_A_15029_CDS 9 121 9 122 PF12998.7 ING Domain 1 100 101 71.9 5.2e-20 1 No_clan
Cotton_A_40177_CDS 1 412 1 412 PF03219.14 TLC Family 73 491 491 561.1 2.1e-168 1 CL0015
Cotton_A_21411_CDS 14 174 14 175 PF00071.22 Ras Domain 1 161 162 206.4 1.9e-61 1 CL0023
Cotton_A_06159_CDS 17 84 7 86 PF06127.11 DUF962 Family 26 93 95 63.6 1.4e-17 1 No_clan
Cotton_A_02510_CDS 9 39 7 39 PF14369.6 zinc_ribbon_9 Domain 3 35 35 40.0 3.4e-10 1 CL0167
Cotton_A_02510_CDS 243 285 242 285 PF13639.6 zf-RING_2 Domain 2 44 44 49.3 4.6e-13 1 CL0229
Cotton_A_18781_CDS 77 131 77 139 PF02536.14 mTERF Family 1 56 314 34.5 1e-08 1 No_clan
Cotton_A_18781_CDS 154 257 147 258 PF02536.14 mTERF Family 211 313 314 49.0 3.9e-13 1 No_clan
Cotton_A_02460_CDS 43 115 42 116 PF02798.20 GST_N Domain 2 75 76 64.8 6.6e-18 1 CL0172
Cotton_A_02460_CDS 143 232 132 233 PF00043.25 GST_C Domain 8 91 93 38.1 1.3e-09 1 CL0497
Cotton_A_29582_CDS 53 220 52 221 PF05042.13 Caleosin Family 2 169 170 248.3 3.7e-74 1 CL0220
Cotton_A_06065_CDS 265 408 202 419 PF00201.18 UDPGT Family 274 409 499 118.6 3.1e-34 1 CL0113
Cotton_A_35200_CDS 105 403 104 403 PF03151.16 TPT Family 2 290 290 349.5 1.4e-104 1 CL0184
Cotton_A_17942_CDS 183 835 183 835 PF00063.21 Myosin_head Domain 1 677 677 732.3 4.7e-220 1 CL0023
Cotton_A_20774_CDS 33 139 32 139 PF00085.20 Thioredoxin Domain 2 103 103 104.1 3.4e-30 1 CL0172
Cotton_A_20774_CDS 169 352 169 355 PF13848.6 Thioredoxin_6 Domain 1 182 184 84.0 1.1e-23 1 CL0172
Cotton_A_20774_CDS 377 480 376 480 PF00085.20 Thioredoxin Domain 2 103 103 90.4 6e-26 1 CL0172
Cotton_A_07658_CDS 144 230 144 230 PF13966.6 zf-RVT Domain 1 85 85 49.8 4.2e-13 1 No_clan
Cotton_A_07658_CDS 339 408 337 412 PF13456.6 RVT_3 Domain 3 73 124 46.0 4e-12 1 CL0219
Cotton_A_39363_CDS 17 246 2 247 PF00501.28 AMP-binding Family 209 422 423 101.1 5.1e-29 1 CL0378
Cotton_A_39363_CDS 255 333 255 333 PF13193.6 AMP-binding_C Domain 1 76 76 35.7 1.3e-08 1 CL0531
Cotton_A_39363_CDS 365 418 363 421 PF00550.25 PP-binding Domain 3 64 67 20.8 0.00035 1 CL0314
Cotton_A_34578_CDS 166 205 164 216 PF13432.6 TPR_16 Family 3 45 68 16.8 0.0083 1 CL0020
Cotton_A_23025_CDS 18 136 17 175 PF03634.13 TCP Family 2 90 156 108.4 4.8e-31 1 No_clan
Cotton_A_09236_CDS 57 146 57 146 PF00447.17 HSF_DNA-bind Domain 1 96 96 106.6 7.8e-31 1 CL0123
Cotton_A_18197_CDS 35 57 35 57 PF00560.33 LRR_1 Repeat 1 23 23 17.8 0.0031 1 CL0022
Cotton_A_18197_CDS 59 117 58 117 PF13855.6 LRR_8 Repeat 2 61 61 40.4 1.9e-10 1 CL0022
Cotton_A_18197_CDS 132 188 128 188 PF13855.6 LRR_8 Repeat 5 61 61 28.5 9.6e-07 1 CL0022
Cotton_A_18197_CDS 225 284 224 284 PF13855.6 LRR_8 Repeat 2 61 61 30.1 3.1e-07 1 CL0022
Cotton_A_18197_CDS 440 702 436 706 PF00069.25 Pkinase Domain 5 259 264 156.7 7.3e-46 1 CL0016
Cotton_A_16230_CDS 48 239 48 243 PF00106.25 adh_short Domain 1 191 195 164.2 2.4e-48 1 CL0063
Cotton_A_21326_CDS 84 312 84 313 PF07859.13 Abhydrolase_3 Domain 1 210 211 191.3 1.9e-56 1 CL0028
Cotton_A_00711_CDS 23 136 21 137 PF01426.18 BAH Domain 3 121 122 84.5 4.8e-24 1 No_clan
Cotton_A_00711_CDS 141 189 141 190 PF00628.29 PHD Domain 1 51 52 39.1 4.9e-10 1 CL0390
Cotton_A_26018_CDS 68 137 38 150 PF05208.13 ALG3 Family 31 102 358 69.5 3.3e-19 1 CL0111
Cotton_A_09004_CDS 24 298 14 298 PF03151.16 TPT Family 14 290 290 73.7 1.6e-20 1 CL0184
Cotton_A_35320_CDS 30 84 29 85 PF00046.29 Homeodomain Domain 2 56 57 57.1 1.2e-15 1 CL0123
Cotton_A_35320_CDS 86 126 86 128 PF02183.18 HALZ Coiled-coil 1 41 43 54.0 1.4e-14 1 No_clan
Cotton_A_30325_CDS 393 497 391 498 PF01416.20 PseudoU_synth_1 Domain 3 107 108 54.1 1.8e-14 1 CL0649
Cotton_A_01557_CDS 59 122 58 122 PF00226.31 DnaJ Domain 2 63 63 76.5 1.2e-21 1 CL0392
Cotton_A_28808_CDS 69 127 69 128 PF00830.19 Ribosomal_L28 Family 1 59 60 71.4 5.1e-20 1 No_clan
Cotton_A_33591_CDS 2 38 1 42 PF00646.33 F-box Domain 4 40 48 19.4 0.00072 1 CL0271
Cotton_A_19563_CDS 3 76 3 76 PF07765.12 KIP1 Family 1 74 74 126.0 4.6e-37 1 No_clan
Cotton_A_35858_CDS 70 98 70 108 PF00786.28 PBD Domain 1 30 59 23.3 6.3e-05 1 No_clan
Cotton_A_35858_CDS 133 268 133 273 PF00620.27 RhoGAP Domain 1 146 152 69.2 3.3e-19 1 CL0409
Cotton_A_23246_CDS 11 83 9 83 PF01169.19 UPF0016 Family 3 75 75 75.3 3.6e-21 1 CL0292
Cotton_A_23246_CDS 146 219 145 219 PF01169.19 UPF0016 Family 2 75 75 74.5 6.1e-21 1 CL0292
Cotton_A_17563_CDS 21 123 12 135 PF06454.11 DUF1084 Family 22 120 273 46.2 3.7e-12 1 No_clan
Cotton_A_17563_CDS 174 317 158 323 PF06454.11 DUF1084 Family 129 267 273 32.1 7.3e-08 1 No_clan
Cotton_A_25361_CDS 41 121 40 135 PF00349.21 Hexokinase_1 Domain 2 81 199 80.4 1.6e-22 1 CL0108
Cotton_A_11643_CDS 145 315 134 315 PF13419.6 HAD_2 Family 11 178 178 70.6 1.7e-19 1 CL0137
Cotton_A_12183_CDS 49 181 49 182 PF03188.16 Cytochrom_B561 Family 1 136 137 156.4 4.4e-46 1 CL0328
Cotton_A_19082_CDS 76 108 75 108 PF00515.28 TPR_1 Repeat 2 34 34 37.1 1.6e-09 1 CL0020
Cotton_A_19082_CDS 205 263 202 263 PF08321.12 PPP5 Family 34 94 94 63.3 2e-17 1 CL0020
Cotton_A_19082_CDS 271 464 270 466 PF00149.28 Metallophos Domain 2 202 204 115.5 4.4e-33 1 CL0163
Cotton_A_19972_CDS 10 219 10 221 PF04654.12 DUF599 Family 1 208 210 197.0 2.4e-58 1 No_clan
Cotton_A_04336_CDS 46 81 45 82 PF05184.15 SapB_1 Domain 2 37 38 48.8 4.9e-13 1 No_clan
Cotton_A_04336_CDS 87 118 86 118 PF03489.17 SapB_2 Family 2 34 34 29.6 5.3e-07 1 No_clan
Cotton_A_04336_CDS 132 166 131 168 PF05184.15 SapB_1 Domain 2 36 38 28.3 1.3e-06 1 No_clan
Cotton_A_04336_CDS 172 205 172 205 PF03489.17 SapB_2 Family 1 34 34 35.6 7.3e-09 1 No_clan
Cotton_A_05533_CDS 160 326 160 326 PF00270.29 DEAD Domain 1 176 176 134.0 4.4e-39 1 CL0023
Cotton_A_05533_CDS 363 470 361 470 PF00271.31 Helicase_C Family 3 111 111 104.2 4.7e-30 1 CL0023
Cotton_A_09709_CDS 244 527 244 527 PF00580.21 UvrD-helicase Domain 1 315 315 210.6 3.9e-62 1 CL0023
Cotton_A_09709_CDS 532 909 532 911 PF13361.6 UvrD_C Domain 1 346 349 136.9 1e-39 1 CL0023
Cotton_A_19106_CDS 3 184 2 192 PF03721.14 UDPG_MGDP_dh_N Domain 2 181 187 222.9 2.5e-66 1 CL0063
Cotton_A_19106_CDS 210 304 210 305 PF00984.19 UDPG_MGDP_dh Domain 1 93 94 110.0 4.8e-32 1 CL0106
Cotton_A_19106_CDS 329 451 328 452 PF03720.15 UDPG_MGDP_dh_C Domain 2 104 105 119.5 7.6e-35 1 CL0039
Cotton_A_39580_CDS 79 215 79 217 PF01565.23 FAD_binding_4 Domain 1 136 139 98.0 3.6e-28 1 CL0077
Cotton_A_39580_CDS 473 531 473 531 PF08031.12 BBE Domain 1 46 46 80.5 7e-23 1 CL0277
Cotton_A_34838_CDS 78 103 70 104 PF00400.32 WD40 Repeat 8 37 38 12.8 0.17 1 CL0186
Cotton_A_34838_CDS 187 215 181 216 PF00400.32 WD40 Repeat 10 37 38 18.1 0.0036 1 CL0186
Cotton_A_34838_CDS 221 257 220 257 PF00400.32 WD40 Repeat 2 38 38 19.3 0.0015 1 CL0186
Cotton_A_34838_CDS 354 398 353 399 PF00400.32 WD40 Repeat 3 37 38 19.9 0.00098 1 CL0186
Cotton_A_08061_CDS 68 123 68 123 PF13418.6 Kelch_4 Repeat 1 49 49 32.4 6.6e-08 1 CL0186
Cotton_A_08061_CDS 135 187 134 188 PF13415.6 Kelch_3 Domain 2 48 49 39.3 5.6e-10 1 CL0186
Cotton_A_08061_CDS 236 292 235 293 PF07646.15 Kelch_2 Repeat 2 48 49 23.9 2.8e-05 1 CL0186
Cotton_A_08061_CDS 591 677 590 679 PF13422.6 DUF4110 Family 2 93 95 98.0 2.4e-28 1 No_clan
Cotton_A_17483_CDS 38 180 36 181 PF03018.14 Dirigent Family 3 147 148 136.7 5e-40 1 CL0650
Cotton_A_32299_CDS 11 80 10 81 PF00173.28 Cyt-b5 Domain 3 73 74 85.5 2e-24 1 No_clan
Cotton_A_00609_CDS 5 91 1 91 PF02519.14 Auxin_inducible Family 9 90 90 83.6 8.1e-24 1 No_clan
Cotton_A_06191_CDS 48 287 44 288 PF04884.14 DUF647 Family 7 240 241 281.9 4.3e-84 1 No_clan
Cotton_A_21457_CDS 15 195 15 197 PF14215.6 bHLH-MYC_N Family 1 173 175 181.5 1.7e-53 1 CL0161
Cotton_A_02648_CDS 152 293 151 296 PF01699.24 Na_Ca_ex Family 2 147 151 85.3 3.9e-24 1 No_clan
Cotton_A_02648_CDS 494 643 492 645 PF01699.24 Na_Ca_ex Family 3 148 151 88.7 3.5e-25 1 No_clan
Cotton_A_25821_CDS 100 416 100 436 PF00295.17 Glyco_hydro_28 Domain 1 310 325 353.3 1.1e-105 1 CL0268
Cotton_A_08027_CDS 93 140 93 142 PF13041.6 PPR_2 Repeat 1 48 50 34.0 2.5e-08 1 CL0020
Cotton_A_08027_CDS 192 240 192 241 PF13041.6 PPR_2 Repeat 1 49 50 45.3 7.2e-12 1 CL0020
Cotton_A_08027_CDS 294 341 293 342 PF13041.6 PPR_2 Repeat 2 49 50 37.2 2.5e-09 1 CL0020
Cotton_A_08027_CDS 369 392 367 395 PF01535.20 PPR Family 3 26 31 11.5 0.28 1 CL0020
Cotton_A_16444_CDS 26 334 26 338 PF00657.22 Lipase_GDSL Family 1 196 200 66.3 3.4e-18 1 CL0264
Cotton_A_15173_CDS 71 358 51 360 PF00481.21 PP2C Family 33 256 258 124.9 4.1e-36 1 CL0238
Cotton_A_14419_CDS 15 149 15 149 PF04061.14 ORMDL Family 1 136 136 168.7 5.6e-50 1 No_clan
Cotton_A_35027_CDS 44 391 41 393 PF03283.13 PAE Family 4 353 355 548.5 6.6e-165 1 CL0028
Cotton_A_40981_CDS 93 603 93 603 PF03141.16 Methyltransf_29 Family 1 506 506 765.5 2.1e-230 1 CL0063
Cotton_A_36752_CDS 16 142 16 142 PF02365.15 NAM Family 1 126 126 138.5 2.1e-40 1 No_clan
Cotton_A_38641_CDS 90 516 89 516 PF02347.16 GDC-P Domain 2 430 430 602.4 4.4e-181 1 CL0061
Cotton_A_38641_CDS 528 809 523 814 PF02347.16 GDC-P Domain 22 285 430 46.0 3.3e-12 1 CL0061
Cotton_A_23456_CDS 91 609 91 615 PF03098.15 An_peroxidase Domain 1 522 529 361.5 7e-108 1 CL0617
Cotton_A_28480_CDS 34 479 34 483 PF00067.22 p450 Domain 1 457 463 326.2 3.1e-97 1 No_clan
Cotton_A_08986_CDS 10 217 10 219 PF05378.13 Hydant_A_N Family 1 176 178 206.7 2.1e-61 1 CL0108
Cotton_A_08986_CDS 238 537 238 538 PF01968.18 Hydantoinase_A Family 1 290 291 360.2 7.3e-108 1 CL0108
Cotton_A_08986_CDS 739 1267 739 1268 PF02538.14 Hydantoinase_B Family 1 515 516 724.3 6.5e-218 1 No_clan
Cotton_A_26321_CDS 46 220 46 220 PF14543.6 TAXi_N Domain 1 178 178 114.3 7.1e-33 1 CL0129
Cotton_A_26321_CDS 247 406 247 407 PF14541.6 TAXi_C Domain 1 160 161 177.7 1.4e-52 1 CL0129
Cotton_A_05253_CDS 48 107 46 107 PF13855.6 LRR_8 Repeat 3 61 61 34.8 1.1e-08 1 CL0022
Cotton_A_05253_CDS 118 140 118 140 PF00560.33 LRR_1 Repeat 1 23 23 12.3 0.21 1 CL0022
Cotton_A_05253_CDS 276 536 273 541 PF07714.17 Pkinase_Tyr Domain 5 254 259 77.6 9.2e-22 1 CL0016
Cotton_A_18286_CDS 271 635 271 636 PF03081.15 Exo70 Family 1 375 376 393.5 9.5e-118 1 CL0295
Cotton_A_37111_CDS 385 582 384 595 PF02902.19 Peptidase_C48 Domain 2 202 216 126.6 1.2e-36 1 CL0125
Cotton_A_40004_CDS 54 520 53 522 PF02990.16 EMP70 Family 2 490 519 527.1 4.6e-158 1 No_clan
Cotton_A_00461_CDS 29 264 29 264 PF00230.20 MIP Family 1 227 227 290.7 7.7e-87 1 No_clan
Cotton_A_18995_CDS 7 135 7 136 PF08315.12 cwf18 Family 1 133 135 125.9 1.7e-36 1 No_clan
Cotton_A_08076_CDS 77 289 76 290 PF01135.19 PCMT Family 2 209 210 284.5 4.9e-85 1 CL0063
Cotton_A_13919_CDS 5 117 1 118 PF00125.24 Histone Domain 16 130 131 83.7 1.4e-23 1 CL0012
Cotton_A_04487_CDS 37 456 37 476 PF00067.22 p450 Domain 1 439 463 215.8 9.7e-64 1 No_clan
Cotton_A_30946_CDS 149 224 149 225 PF02179.16 BAG Family 1 74 75 64.2 1.1e-17 1 No_clan
Cotton_A_01322_CDS 73 211 73 213 PF01565.23 FAD_binding_4 Domain 1 136 139 91.4 4.2e-26 1 CL0077
Cotton_A_01322_CDS 471 530 471 530 PF08031.12 BBE Domain 1 46 46 70.6 8.5e-20 1 CL0277
Cotton_A_28876_CDS 142 167 141 168 PF01436.21 NHL Repeat 2 27 28 20.4 0.00036 1 CL0186
Cotton_A_24879_CDS 32 210 31 210 PF01397.21 Terpene_synth Domain 2 192 192 198.2 1e-58 1 No_clan
Cotton_A_23990_CDS 7 105 7 106 PF03195.14 LOB Family 1 98 99 121.4 1.8e-35 1 No_clan
Cotton_A_07884_CDS 51 156 51 157 PF14226.6 DIOX_N Family 1 117 118 98.4 4.5e-28 1 CL0029
Cotton_A_07884_CDS 203 301 201 301 PF03171.20 2OG-FeII_Oxy Domain 3 101 101 94.3 5.3e-27 1 CL0029
Cotton_A_19422_CDS 102 507 94 522 PF00067.22 p450 Domain 31 447 463 253.1 4.8e-75 1 No_clan
Cotton_A_01880_CDS 69 203 69 205 PF13716.6 CRAL_TRIO_2 Domain 1 136 138 85.1 4.9e-24 1 CL0512
Cotton_A_35668_CDS 64 430 26 435 PF07690.16 MFS_1 Family 23 344 353 109.6 1.5e-31 1 CL0015
Cotton_A_27438_CDS 11 84 11 84 PF07765.12 KIP1 Family 1 74 74 126.1 4.3e-37 1 No_clan
Cotton_A_06968_CDS 45 118 45 119 PF07019.12 Rab5ip Family 1 76 82 36.4 6e-09 1 No_clan
Cotton_A_41129_CDS 209 434 209 434 PF02854.19 MIF4G Family 1 212 212 190.2 3.4e-56 1 CL0020
Cotton_A_41129_CDS 609 720 608 720 PF02847.17 MA3 Family 2 113 113 73.9 9.4e-21 1 CL0020
Cotton_A_23971_CDS 278 571 278 572 PF01501.20 Glyco_transf_8 Family 1 255 256 218.3 1.2e-64 1 CL0110
Cotton_A_16918_CDS 28 296 27 296 PF07714.17 Pkinase_Tyr Domain 3 259 259 164.6 2.6e-48 1 CL0016
Cotton_A_27151_CDS 35 528 35 530 PF00118.24 Cpn60_TCP1 Family 1 489 491 536.3 6.5e-161 1 No_clan
Cotton_A_10711_CDS 474 501 474 501 PF00614.22 PLDc Family 1 28 28 33.5 3e-08 1 CL0479
Cotton_A_10711_CDS 774 947 773 951 PF13091.6 PLDc_2 Domain 2 122 133 40.9 1.6e-10 1 CL0479
Cotton_A_38080_CDS 111 395 65 397 PF00854.21 PTR2 Family 35 299 395 226.1 6.5e-67 1 CL0015
Cotton_A_18705_CDS 20 281 20 281 PF04078.13 Rcd1 Family 1 259 259 294.3 6.9e-88 1 No_clan
Cotton_A_40565_CDS 305 679 244 679 PF07990.12 NABP Domain 105 388 388 48.7 8.1e-13 1 No_clan
Cotton_A_40565_CDS 719 747 717 751 PF00806.19 PUF Repeat 3 31 35 25.5 6.6e-06 1 CL0020
Cotton_A_40565_CDS 790 822 789 823 PF00806.19 PUF Repeat 2 34 35 28.4 8e-07 1 CL0020
Cotton_A_40565_CDS 827 858 825 859 PF00806.19 PUF Repeat 3 34 35 30.4 1.9e-07 1 CL0020
Cotton_A_40565_CDS 863 890 862 896 PF00806.19 PUF Repeat 2 29 35 20.4 0.00028 1 CL0020
Cotton_A_40565_CDS 899 925 898 932 PF00806.19 PUF Repeat 2 27 35 27.8 1.2e-06 1 CL0020
Cotton_A_40565_CDS 943 974 941 974 PF00806.19 PUF Repeat 4 35 35 30.1 2.3e-07 1 CL0020
Cotton_A_20041_CDS 78 106 78 106 PF01535.20 PPR Family 3 31 31 22.0 0.00012 1 CL0020
Cotton_A_20041_CDS 149 172 146 176 PF01535.20 PPR Family 4 27 31 22.0 0.00013 1 CL0020
Cotton_A_20041_CDS 177 207 177 207 PF01535.20 PPR Family 1 31 31 18.7 0.0014 1 CL0020
Cotton_A_20041_CDS 209 256 209 257 PF13041.6 PPR_2 Repeat 1 48 50 51.2 1.1e-13 1 CL0020
Cotton_A_20041_CDS 320 344 318 347 PF01535.20 PPR Family 4 28 31 14.6 0.028 1 CL0020
Cotton_A_20041_CDS 346 393 345 394 PF13041.6 PPR_2 Repeat 2 49 50 44.2 1.6e-11 1 CL0020
Cotton_A_20041_CDS 421 445 419 447 PF01535.20 PPR Family 3 27 31 11.5 0.29 1 CL0020
Cotton_A_35221_CDS 1 184 1 185 PF05018.13 DUF667 Family 1 184 185 302.6 9.2e-91 1 No_clan
Cotton_A_25682_CDS 9 76 8 76 PF06522.11 B12D Family 2 69 69 86.5 7.7e-25 1 No_clan
Cotton_A_29239_CDS 45 306 45 309 PF07714.17 Pkinase_Tyr Domain 1 256 259 101.4 5e-29 1 CL0016
Cotton_A_20710_CDS 4 146 3 146 PF01280.20 Ribosomal_L19e Family 2 144 144 219.7 1.4e-65 1 No_clan
Cotton_A_11849_CDS 5 99 5 121 PF18052.1 Rx_N Domain 1 89 93 77.2 8.8e-22 1 No_clan
Cotton_A_11849_CDS 194 401 181 415 PF00931.22 NB-ARC Domain 15 222 252 173.8 3.6e-51 1 CL0023
Cotton_A_11849_CDS 601 649 598 650 PF13855.6 LRR_8 Repeat 10 59 61 28.5 9.4e-07 1 CL0022
Cotton_A_07855_CDS 134 248 127 253 PF02577.14 DNase-RNase Family 13 123 129 80.2 9.7e-23 1 No_clan
Cotton_A_35913_CDS 43 80 41 81 PF08263.12 LRRNT_2 Family 4 40 41 45.2 8.4e-12 1 No_clan
Cotton_A_35913_CDS 172 218 170 218 PF13855.6 LRR_8 Repeat 15 61 61 28.8 7.7e-07 1 CL0022
Cotton_A_35247_CDS 9 75 9 90 PF14226.6 DIOX_N Family 1 65 118 28.2 2.6e-06 1 CL0029
Cotton_A_35247_CDS 168 256 156 257 PF03171.20 2OG-FeII_Oxy Domain 10 100 101 67.8 9.4e-19 1 CL0029
Cotton_A_31761_CDS 47 258 47 258 PF04720.12 PDDEXK_6 Family 1 221 221 216.2 5.4e-64 1 No_clan
Cotton_A_29850_CDS 6 116 5 116 PF13881.6 Rad60-SLD_2 Domain 2 111 111 136.8 3e-40 1 CL0072
Cotton_A_19287_CDS 80 368 80 369 PF08392.12 FAE1_CUT1_RppA Family 1 289 290 463.4 2.8e-139 1 CL0046
Cotton_A_19287_CDS 386 466 383 467 PF08541.10 ACP_syn_III_C Domain 12 89 90 48.4 7.7e-13 1 CL0046
Cotton_A_37244_CDS 21 285 19 286 PF00069.25 Pkinase Domain 4 260 264 172.0 1.5e-50 1 CL0016
Cotton_A_28349_CDS 228 329 228 333 PF00855.17 PWWP Domain 1 92 96 53.7 2.1e-14 1 CL0049
Cotton_A_28349_CDS 416 469 416 470 PF00628.29 PHD Domain 1 51 52 35.1 8.7e-09 1 CL0390
Cotton_A_28349_CDS 585 653 580 662 PF13832.6 zf-HC5HC2H_2 Domain 9 77 110 31.7 1.4e-07 1 CL0390
Cotton_A_28349_CDS 791 896 791 897 PF00856.28 SET Family 1 168 169 71.1 1.4e-19 1 No_clan
Cotton_A_03805_CDS 20 136 20 136 PF02136.20 NTF2 Domain 1 120 120 111.5 3.4e-32 1 CL0051
Cotton_A_03805_CDS 303 359 303 369 PF00076.22 RRM_1 Domain 1 58 70 36.0 4.5e-09 1 CL0221
Cotton_A_22927_CDS 71 226 70 226 PF02453.17 Reticulon Family 2 157 157 193.0 2.9e-57 1 CL0484
Cotton_A_28962_CDS 1 439 1 440 PF02458.15 Transferase Family 1 433 434 275.6 5.9e-82 1 CL0149
Cotton_A_03986_CDS 98 171 96 171 PF03765.15 CRAL_TRIO_N Domain 3 54 54 36.8 3.2e-09 1 CL0214
Cotton_A_03986_CDS 194 355 191 356 PF00650.20 CRAL_TRIO Domain 6 158 159 109.1 1.7e-31 1 CL0512
Cotton_A_04608_CDS 90 191 89 192 PF00044.24 Gp_dh_N Domain 2 100 101 110.2 5.2e-32 1 CL0063
Cotton_A_04608_CDS 247 404 247 404 PF02800.20 Gp_dh_C Domain 1 158 158 221.2 5e-66 1 CL0139
Cotton_A_04608_CDS 433 454 424 454 PF02672.15 CP12 Family 49 70 70 22.8 0.00011 1 No_clan
Cotton_A_07774_CDS 31 69 28 69 PF08263.12 LRRNT_2 Family 4 41 41 22.2 0.00013 1 No_clan
Cotton_A_07774_CDS 95 111 95 115 PF00560.33 LRR_1 Repeat 1 17 23 11.6 0.36 1 CL0022
Cotton_A_07774_CDS 412 685 409 685 PF07714.17 Pkinase_Tyr Domain 4 259 259 132.8 1.3e-38 1 CL0016
Cotton_A_17512_CDS 62 545 61 546 PF00982.21 Glyco_transf_20 Family 2 473 474 601.4 1.1e-180 1 CL0113
Cotton_A_17512_CDS 595 829 595 830 PF02358.16 Trehalose_PPase Family 1 232 233 243.1 2e-72 1 CL0137
Cotton_A_18468_CDS 12 75 10 76 PF00313.22 CSD Domain 3 65 66 75.7 1.9e-21 1 CL0021
Cotton_A_18468_CDS 103 117 102 119 PF00098.23 zf-CCHC Domain 2 16 18 30.9 1.8e-07 1 CL0511
Cotton_A_18468_CDS 157 173 156 173 PF00098.23 zf-CCHC Domain 2 18 18 30.9 1.9e-07 1 CL0511
Cotton_A_19687_CDS 5 165 5 166 PF00071.22 Ras Domain 1 161 162 215.2 3.7e-64 1 CL0023
Cotton_A_04062_CDS 29 297 27 297 PF07714.17 Pkinase_Tyr Domain 4 259 259 158.9 1.4e-46 1 CL0016
Cotton_A_06284_CDS 72 331 72 332 PF02485.21 Branch Family 1 246 247 252.2 5.1e-75 1 CL0110
Cotton_A_03061_CDS 71 94 62 96 PF00400.32 WD40 Repeat 10 32 38 16.2 0.015 1 CL0186
Cotton_A_03061_CDS 100 136 97 136 PF00400.32 WD40 Repeat 4 38 38 21.9 0.00023 1 CL0186
Cotton_A_03061_CDS 200 237 199 237 PF00400.32 WD40 Repeat 2 38 38 21.5 0.00031 1 CL0186
Cotton_A_13612_CDS 42 334 36 351 PF01112.18 Asparaginase_2 Domain 27 286 306 245.8 5e-73 1 CL0052
Cotton_A_02169_CDS 35 98 33 105 PF01388.21 ARID Domain 3 66 90 47.7 1.9e-12 1 CL0123
Cotton_A_26622_CDS 36 117 36 117 PF04683.13 Proteasom_Rpn13 Family 1 86 86 89.3 1.7e-25 1 CL0266
Cotton_A_26622_CDS 195 300 195 300 PF16550.5 RPN13_C Domain 1 112 112 87.9 4.8e-25 1 No_clan
Cotton_A_19266_CDS 9 80 9 81 PF00173.28 Cyt-b5 Domain 1 73 74 93.3 7.3e-27 1 No_clan
Cotton_A_24746_CDS 61 162 61 181 PF14226.6 DIOX_N Family 1 101 118 68.9 6.3e-19 1 CL0029
Cotton_A_24746_CDS 216 309 212 311 PF03171.20 2OG-FeII_Oxy Domain 5 99 101 82.8 2e-23 1 CL0029
Cotton_A_28158_CDS 37 192 36 192 PF00582.26 Usp Domain 2 141 141 101.7 4.8e-29 1 CL0039
Cotton_A_02909_CDS 173 194 173 195 PF05553.11 DUF761 Family 1 22 36 26.1 4.5e-06 1 No_clan
Cotton_A_33927_CDS 24 205 13 215 PF00378.20 ECH_1 Domain 20 193 251 81.8 4.8e-23 1 CL0127
Cotton_A_02354_CDS 72 86 71 88 PF07145.15 PAM2 Motif 2 16 18 21.9 8.7e-05 1 No_clan
Cotton_A_02354_CDS 153 215 153 220 PF00076.22 RRM_1 Domain 1 65 70 45.8 4e-12 1 CL0221
Cotton_A_02354_CDS 250 316 250 318 PF00076.22 RRM_1 Domain 1 68 70 30.4 2.6e-07 1 CL0221
Cotton_A_02354_CDS 473 535 473 540 PF00076.22 RRM_1 Domain 1 65 70 45.8 4e-12 1 CL0221
Cotton_A_02354_CDS 570 636 570 638 PF00076.22 RRM_1 Domain 1 68 70 30.1 3.2e-07 1 CL0221
Cotton_A_08780_CDS 94 562 94 563 PF05761.14 5_nucleotid Family 1 457 458 490.6 4.6e-147 1 CL0137
Cotton_A_26120_CDS 41 145 41 145 PF13344.6 Hydrolase_6 Domain 1 101 101 69.2 2.6e-19 1 CL0137
Cotton_A_26120_CDS 272 368 271 368 PF13242.6 Hydrolase_like Domain 2 75 75 52.9 2.8e-14 1 CL0137
Cotton_A_04370_CDS 9 300 9 314 PF04502.13 DUF572 Family 1 283 332 323.3 2.3e-96 1 No_clan
Cotton_A_13715_CDS 308 576 308 579 PF00069.25 Pkinase Domain 1 258 264 142.9 1.2e-41 1 CL0016
Cotton_A_00602_CDS 18 144 17 144 PF02365.15 NAM Family 2 126 126 118.8 2.7e-34 1 No_clan
Cotton_A_34534_CDS 16 293 16 293 PF06432.11 GPI2 Family 1 280 280 254.2 1.6e-75 1 No_clan
Cotton_A_25852_CDS 37 433 29 435 PF00450.22 Peptidase_S10 Domain 10 417 419 334.7 1.1e-99 1 CL0028
Cotton_A_03148_CDS 70 179 69 179 PF10998.8 DUF2838 Family 2 111 111 138.0 1.4e-40 1 No_clan
Cotton_A_09581_CDS 148 375 125 378 PF00777.18 Glyco_transf_29 Family 30 261 269 118.0 4.7e-34 1 No_clan
Cotton_A_12569_CDS 4 161 1 174 PF00069.25 Pkinase Domain 52 195 264 81.5 6.2e-23 1 CL0016
Cotton_A_39752_CDS 18 174 17 174 PF04520.13 Senescence_reg Family 2 168 168 143.0 1.5e-41 1 No_clan
Cotton_A_24350_CDS 31 100 31 104 PF12254.8 DNA_pol_alpha_N Family 1 63 66 48.5 6.9e-13 1 No_clan
Cotton_A_24350_CDS 379 759 376 761 PF03104.19 DNA_pol_B_exo1 Family 6 335 337 96.7 1.5e-27 1 CL0219
Cotton_A_24350_CDS 825 1287 824 1288 PF00136.21 DNA_pol_B Family 2 458 459 412.1 2.7e-123 1 CL0194
Cotton_A_24350_CDS 1327 1531 1325 1532 PF08996.10 zf-DNA_Pol Domain 3 184 185 151.0 3e-44 1 No_clan
Cotton_A_03855_CDS 5 89 5 90 PF01221.18 Dynein_light Domain 1 85 86 105.2 1.6e-30 1 No_clan
Cotton_A_00345_CDS 7 112 5 113 PF05056.12 DUF674 Family 3 109 449 127.5 6.2e-37 1 No_clan
Cotton_A_00345_CDS 113 182 111 187 PF05056.12 DUF674 Family 132 208 449 27.8 1.1e-06 1 No_clan
Cotton_A_00345_CDS 192 369 183 370 PF05056.12 DUF674 Family 252 448 449 129.2 2e-37 1 No_clan
Cotton_A_00708_CDS 59 115 59 115 PF08246.12 Inhibitor_I29 Domain 1 58 58 44.4 1.6e-11 1 No_clan
Cotton_A_00708_CDS 142 365 142 367 PF00112.23 Peptidase_C1 Domain 1 216 218 255.2 6.8e-76 1 CL0125
Cotton_A_29175_CDS 4 203 4 204 PF01912.18 eIF-6 Family 1 196 197 270.8 5e-81 1 CL0197
Cotton_A_02905_CDS 163 222 162 222 PF13855.6 LRR_8 Repeat 2 61 61 37.4 1.6e-09 1 CL0022
Cotton_A_02905_CDS 235 294 234 294 PF13855.6 LRR_8 Repeat 2 61 61 31.5 1.1e-07 1 CL0022
Cotton_A_21470_CDS 111 506 110 506 PF05686.12 Glyco_transf_90 Family 2 396 396 604.1 1.1e-181 1 CL0113
Cotton_A_14536_CDS 22 212 22 213 PF04511.15 DER1 Family 1 190 191 153.8 4.8e-45 1 CL0207
Cotton_A_01787_CDS 16 50 15 56 PF12937.7 F-box-like Domain 2 35 48 27.2 2.5e-06 1 CL0271
Cotton_A_29972_CDS 66 266 65 280 PF07714.17 Pkinase_Tyr Domain 2 157 259 65.9 3.2e-18 1 CL0016
Cotton_A_29972_CDS 338 441 319 441 PF00069.25 Pkinase Domain 154 264 264 72.5 3.4e-20 1 CL0016
Cotton_A_35778_CDS 8 126 5 136 PF00293.28 NUDIX Domain 4 120 131 64.4 1e-17 1 CL0261
Cotton_A_23300_CDS 223 269 223 269 PF13445.6 zf-RING_UBOX Domain 1 39 39 32.0 8.9e-08 1 CL0229
Cotton_A_03996_CDS 60 81 60 81 PF00096.26 zf-C2H2 Domain 2 23 23 22.5 0.00011 1 CL0361
Cotton_A_35076_CDS 34 77 33 77 PF08263.12 LRRNT_2 Family 2 41 41 29.6 6.2e-07 1 No_clan
Cotton_A_35076_CDS 298 357 297 357 PF13855.6 LRR_8 Repeat 3 61 61 31.3 1.2e-07 1 CL0022
Cotton_A_14247_CDS 75 198 73 198 PF04859.12 DUF641 Family 3 128 128 141.6 1.6e-41 1 No_clan
Cotton_A_01112_CDS 76 149 76 151 PF01336.25 tRNA_anti-codon Domain 1 74 76 32.8 4.9e-08 1 CL0021
Cotton_A_01112_CDS 168 274 166 275 PF08784.11 RPA_C Domain 1 103 104 61.3 1.2e-16 1 CL0123
Cotton_A_20028_CDS 32 159 31 160 PF12353.8 eIF3g Family 2 124 125 114.4 4.3e-33 1 CL0511
Cotton_A_20028_CDS 212 274 209 279 PF00076.22 RRM_1 Domain 4 65 70 54.1 1e-14 1 CL0221
Cotton_A_13403_CDS 136 187 135 189 PF13833.6 EF-hand_8 Domain 2 53 55 43.1 2.8e-11 1 CL0220
Cotton_A_38721_CDS 16 38 15 40 PF05678.14 VQ Motif 4 26 28 28.7 6.4e-07 1 No_clan
Cotton_A_06343_CDS 179 330 179 332 PF01764.25 Lipase_3 Family 1 140 142 121.6 2.2e-35 1 CL0028
Cotton_A_00745_CDS 24 341 24 343 PF00332.18 Glyco_hydro_17 Domain 1 311 313 276.1 4.6e-82 1 CL0058
Cotton_A_00745_CDS 368 438 367 438 PF07983.13 X8 Domain 2 76 76 76.4 2.1e-21 1 No_clan
Cotton_A_04804_CDS 12 318 12 323 PF00657.22 Lipase_GDSL Family 1 195 200 75.9 4.1e-21 1 CL0264
Cotton_A_05896_CDS 73 149 71 149 PF11998.8 DUF3493 Family 3 79 79 89.4 1.2e-25 1 No_clan
Cotton_A_22780_CDS 235 294 234 294 PF13855.6 LRR_8 Repeat 2 61 61 32.5 5.5e-08 1 CL0022
Cotton_A_22780_CDS 362 541 360 541 PF11721.8 Malectin Domain 3 165 165 142.5 1.3e-41 1 CL0202
Cotton_A_22780_CDS 619 886 616 887 PF07714.17 Pkinase_Tyr Domain 4 258 259 169.6 7.4e-50 1 CL0016
Cotton_A_19997_CDS 111 236 108 238 PF00931.22 NB-ARC Domain 4 128 252 74.1 9.9e-21 1 CL0023
Cotton_A_34479_CDS 95 270 94 270 PF00724.20 Oxidored_FMN Domain 160 342 342 162.4 1.6e-47 1 CL0036
Cotton_A_18858_CDS 15 41 12 42 PF01535.20 PPR Family 4 30 31 18.1 0.0022 1 CL0020
Cotton_A_18858_CDS 43 69 43 72 PF01535.20 PPR Family 1 27 31 16.8 0.0059 1 CL0020
Cotton_A_18858_CDS 72 119 71 120 PF13041.6 PPR_2 Repeat 2 49 50 44.2 1.6e-11 1 CL0020
Cotton_A_18858_CDS 145 168 144 174 PF01535.20 PPR Family 2 25 31 19.0 0.0011 1 CL0020
Cotton_A_18858_CDS 172 218 172 219 PF13041.6 PPR_2 Repeat 1 47 50 50.6 1.6e-13 1 CL0020
Cotton_A_18858_CDS 238 287 238 287 PF13041.6 PPR_2 Repeat 1 50 50 46.3 3.5e-12 1 CL0020
Cotton_A_18858_CDS 339 386 339 388 PF13041.6 PPR_2 Repeat 1 48 50 40.0 3.4e-10 1 CL0020
Cotton_A_18858_CDS 415 439 413 441 PF01535.20 PPR Family 3 27 31 14.3 0.035 1 CL0020
Cotton_A_18858_CDS 516 637 513 638 PF14432.6 DYW_deaminase Family 4 126 127 132.2 9.5e-39 1 CL0109
Cotton_A_15744_CDS 156 360 41 361 PF00657.22 Lipase_GDSL Family 58 199 200 50.1 3.2e-13 1 CL0264
Cotton_A_11149_CDS 29 61 29 61 PF06376.12 AGP Family 1 36 36 62.7 2.1e-17 1 No_clan
Cotton_A_09294_CDS 9 228 9 268 PF00069.25 Pkinase Domain 1 213 264 92.6 2.5e-26 1 CL0016
Cotton_A_20930_CDS 122 255 119 257 PF00924.18 MS_channel Family 70 204 206 43.3 3e-11 1 No_clan
Cotton_A_31289_CDS 5 144 3 145 PF09801.9 SYS1 Family 3 143 144 145.9 8.8e-43 1 No_clan
Cotton_A_31289_CDS 313 349 311 349 PF00400.32 WD40 Repeat 3 38 38 26.4 8.6e-06 1 CL0186
Cotton_A_31289_CDS 355 393 354 393 PF00400.32 WD40 Repeat 2 38 38 22.3 0.00017 1 CL0186
Cotton_A_31289_CDS 399 437 397 437 PF00400.32 WD40 Repeat 3 38 38 26.9 5.9e-06 1 CL0186
Cotton_A_31289_CDS 442 478 441 479 PF00400.32 WD40 Repeat 2 37 38 36.0 7.9e-09 1 CL0186
Cotton_A_31289_CDS 541 985 541 986 PF04053.14 Coatomer_WDAD Family 1 444 445 548.4 1.4e-164 1 CL0186
Cotton_A_21062_CDS 16 73 16 83 PF00076.22 RRM_1 Domain 1 57 70 62.7 2.1e-17 1 CL0221
Cotton_A_38952_CDS 226 246 222 246 PF00642.24 zf-CCCH Family 5 25 27 22.5 7.7e-05 1 CL0537
Cotton_A_20407_CDS 42 161 11 161 PF04885.13 Stig1 Family 34 139 139 112.7 1.8e-32 1 No_clan
Cotton_A_11938_CDS 45 192 44 193 PF04535.12 DUF588 Domain 2 149 150 144.0 2.8e-42 1 CL0396
Cotton_A_37906_CDS 20 138 19 140 PF06212.12 GRIM-19 Family 2 127 132 143.8 2.8e-42 1 No_clan
Cotton_A_01642_CDS 1 80 1 95 PF05055.12 DUF677 Family 63 144 336 56.0 2.9e-15 1 CL0133
Cotton_A_13681_CDS 182 232 182 232 PF00415.18 RCC1 Repeat 1 50 50 28.0 2.5e-06 1 CL0186
Cotton_A_13681_CDS 236 283 235 285 PF00415.18 RCC1 Repeat 2 48 50 47.4 2.2e-12 1 CL0186
Cotton_A_13681_CDS 288 339 288 339 PF00415.18 RCC1 Repeat 1 50 50 40.4 3.4e-10 1 CL0186
Cotton_A_13681_CDS 342 383 342 391 PF00415.18 RCC1 Repeat 1 42 50 27.2 4.4e-06 1 CL0186
Cotton_A_13681_CDS 433 462 433 462 PF13540.6 RCC1_2 Repeat 1 30 30 26.8 3.3e-06 1 CL0186
Cotton_A_05777_CDS 1 753 1 753 PF16399.5 Aquarius_N Family 49 797 797 914.8 4.3e-275 1 No_clan
Cotton_A_05777_CDS 765 1054 752 1055 PF13086.6 AAA_11 Domain 14 260 261 95.0 6.3e-27 1 CL0023
Cotton_A_05777_CDS 1063 1254 1063 1256 PF13087.6 AAA_12 Domain 1 197 199 88.7 3.9e-25 1 CL0023
Cotton_A_25892_CDS 103 136 103 148 PF00786.28 PBD Domain 1 35 59 26.8 4.9e-06 1 No_clan
Cotton_A_25892_CDS 178 300 166 306 PF00620.27 RhoGAP Domain 12 145 152 69.0 3.9e-19 1 CL0409
Cotton_A_11818_CDS 91 562 85 562 PF03219.14 TLC Family 13 491 491 659.1 4.1e-198 1 CL0015
Cotton_A_02339_CDS 37 178 36 189 PF00106.25 adh_short Domain 2 138 195 94.7 4.7e-27 1 CL0063
Cotton_A_02339_CDS 197 249 193 252 PF00106.25 adh_short Domain 140 190 195 25.5 7.7e-06 1 CL0063
Cotton_A_26961_CDS 75 207 75 209 PF00730.25 HhH-GPD Domain 1 106 108 72.8 2.7e-20 1 CL0198
Cotton_A_26961_CDS 142 167 138 167 PF00633.23 HHH Motif 5 30 30 25.7 6.6e-06 1 CL0198
Cotton_A_26961_CDS 299 422 294 424 PF14815.6 NUDIX_4 Domain 9 108 110 50.9 1.3e-13 1 CL0261
Cotton_A_21840_CDS 44 140 17 141 PF00134.23 Cyclin_N Domain 30 126 127 58.9 3.9e-16 1 CL0065
Cotton_A_21840_CDS 143 243 143 251 PF02984.19 Cyclin_C Domain 1 95 119 43.5 2.8e-11 1 CL0065
Cotton_A_00170_CDS 24 229 22 229 PF04450.12 BSP Family 3 207 207 179.5 7.2e-53 1 CL0126
Cotton_A_26329_CDS 116 205 116 222 PF13328.6 HD_4 Family 1 84 156 64.9 6.8e-18 1 CL0237
Cotton_A_26329_CDS 263 323 261 323 PF13328.6 HD_4 Family 96 156 156 68.5 5.4e-19 1 CL0237
Cotton_A_26329_CDS 471 575 471 585 PF04607.17 RelA_SpoT Family 1 103 117 84.3 7.4e-24 1 CL0260
Cotton_A_26329_CDS 861 912 858 914 PF02824.21 TGS Family 3 58 60 27.4 2.6e-06 1 CL0072
Cotton_A_13022_CDS 23 383 20 384 PF03283.13 PAE Family 4 354 355 508.3 1.1e-152 1 CL0028
Cotton_A_38065_CDS 16 59 14 61 PF00643.24 zf-B_box Domain 3 40 42 31.0 2e-07 1 No_clan
Cotton_A_38065_CDS 360 397 360 400 PF06203.14 CCT Motif 1 38 44 55.0 5.9e-15 1 CL0281
Cotton_A_27488_CDS 15 58 8 59 PF04570.14 zf-FLZ Domain 9 53 54 76.5 8e-22 1 CL0175
Cotton_A_13625_CDS 96 141 95 142 PF00249.31 Myb_DNA-binding Domain 2 45 46 45.1 8.6e-12 1 CL0123
Cotton_A_14147_CDS 4 90 4 103 PF02362.21 B3 Family 1 88 101 40.4 2e-10 1 CL0405
Cotton_A_16022_CDS 17 132 17 134 PF04133.14 Vps55 Family 1 115 117 113.0 7.4e-33 1 No_clan
Cotton_A_22325_CDS 19 121 18 122 PF03227.16 GILT Family 2 105 106 100.4 5.9e-29 1 CL0172
Cotton_A_41261_CDS 30 84 29 85 PF00046.29 Homeodomain Domain 2 56 57 61.3 5.7e-17 1 CL0123
Cotton_A_41261_CDS 86 127 86 128 PF02183.18 HALZ Coiled-coil 1 42 43 53.7 1.8e-14 1 No_clan
Cotton_A_14370_CDS 115 221 115 223 PF03168.13 LEA_2 Domain 1 99 101 31.6 1.8e-07 1 CL0159
Cotton_A_12204_CDS 853 1030 853 1031 PF05063.14 MT-A70 Family 1 171 172 176.4 4.7e-52 1 CL0063
Cotton_A_15684_CDS 73 264 71 264 PF03462.18 PCRF Domain 3 193 193 205.8 5.4e-61 1 No_clan
Cotton_A_15684_CDS 272 381 271 381 PF00472.20 RF-1 Family 2 116 116 126.0 6.4e-37 1 CL0337
Cotton_A_23737_CDS 283 336 282 337 PF02791.17 DDT Family 3 59 60 50.5 1.9e-13 1 No_clan
Cotton_A_23737_CDS 394 427 387 427 PF15612.6 WHIM1 Family 13 46 46 20.0 0.00036 1 No_clan
Cotton_A_23737_CDS 479 521 478 523 PF00628.29 PHD Domain 2 50 52 31.6 1.1e-07 1 CL0390
Cotton_A_20212_CDS 29 185 28 185 PF04043.15 PMEI Domain 2 154 154 137.3 5.4e-40 1 No_clan
Cotton_A_32336_CDS 7 96 6 107 PF00168.30 C2 Domain 2 91 103 43.9 2.3e-11 1 CL0154
Cotton_A_01745_CDS 325 381 325 381 PF06830.11 Root_cap Family 1 57 57 102.5 9.6e-30 1 No_clan
Cotton_A_02993_CDS 100 127 97 127 PF01535.20 PPR Family 4 31 31 15.4 0.016 1 CL0020
Cotton_A_02993_CDS 157 204 156 205 PF13041.6 PPR_2 Repeat 2 49 50 32.6 6.9e-08 1 CL0020
Cotton_A_02993_CDS 258 304 257 306 PF13041.6 PPR_2 Repeat 2 48 50 32.8 5.7e-08 1 CL0020
Cotton_A_02993_CDS 333 354 331 359 PF01535.20 PPR Family 4 25 31 14.0 0.046 1 CL0020
Cotton_A_02993_CDS 359 406 358 407 PF13041.6 PPR_2 Repeat 2 49 50 42.1 7.4e-11 1 CL0020
Cotton_A_02993_CDS 434 461 433 462 PF01535.20 PPR Family 3 30 31 14.2 0.038 1 CL0020
Cotton_A_02993_CDS 532 656 532 656 PF14432.6 DYW_deaminase Family 1 127 127 140.7 2.2e-41 1 CL0109
Cotton_A_03591_CDS 13 63 13 64 PF00847.20 AP2 Domain 1 53 54 47.3 1.8e-12 1 CL0081
Cotton_A_37302_CDS 4 319 3 319 PF05004.13 IFRD Family 1 305 306 272.8 3.1e-81 1 CL0020
Cotton_A_37302_CDS 365 416 365 417 PF04836.12 IFRD_C Family 1 51 52 53.6 2.5e-14 1 No_clan
Cotton_A_07330_CDS 47 226 43 227 PF00625.21 Guanylate_kin Domain 5 181 182 126.1 1.2e-36 1 CL0023
Cotton_A_28589_CDS 122 459 121 460 PF03016.15 Exostosin Family 2 299 300 305.0 5e-91 1 No_clan
Cotton_A_07011_CDS 4 248 4 248 PF01876.16 RNase_P_p30 Domain 1 215 215 185.7 7.7e-55 1 CL0034
Cotton_A_03457_CDS 57 96 52 97 PF00010.26 HLH Domain 10 52 53 32.7 5.4e-08 1 No_clan
Cotton_A_07392_CDS 24 113 24 113 PF00447.17 HSF_DNA-bind Domain 1 96 96 102.7 1.3e-29 1 CL0123
Cotton_A_13635_CDS 17 124 16 126 PF01412.18 ArfGap Domain 2 115 117 141.3 1.3e-41 1 No_clan
Cotton_A_34032_CDS 23 187 21 189 PF04851.15 ResIII Family 5 169 171 48.1 1.2e-12 1 CL0023
Cotton_A_34032_CDS 370 487 367 489 PF00271.31 Helicase_C Family 4 109 111 59.2 4.4e-16 1 CL0023
Cotton_A_39308_CDS 10 153 5 157 PF00190.22 Cupin_1 Domain 6 147 151 96.2 1.4e-27 1 CL0029
Cotton_A_39308_CDS 196 338 190 339 PF00190.22 Cupin_1 Domain 6 150 151 72.6 2.5e-20 1 CL0029
Cotton_A_28046_CDS 3 163 3 163 PF05687.13 BES1_N Family 1 152 152 186.8 3e-55 1 No_clan
Cotton_A_24664_CDS 27 94 26 94 PF00690.26 Cation_ATPase_N Domain 2 69 69 67.5 6e-19 1 No_clan
Cotton_A_24664_CDS 147 361 146 361 PF00122.20 E1-E2_ATPase Family 2 181 181 167.8 1.6e-49 1 No_clan
Cotton_A_24664_CDS 445 546 445 547 PF13246.6 Cation_ATPase Family 1 90 91 58.7 4.7e-16 1 CL0137
Cotton_A_24664_CDS 634 750 628 750 PF00702.26 Hydrolase Domain 113 210 210 65.1 1e-17 1 CL0137
Cotton_A_24664_CDS 821 1047 820 1047 PF00689.21 Cation_ATPase_C Family 2 182 182 169.7 5.2e-50 1 No_clan
Cotton_A_15405_CDS 46 193 40 196 PF05470.12 eIF-3c_N Family 8 155 593 180.1 6e-53 1 No_clan
Cotton_A_15405_CDS 188 620 185 620 PF05470.12 eIF-3c_N Family 179 593 593 621.4 1.4e-186 1 No_clan
Cotton_A_15405_CDS 628 756 627 757 PF01399.27 PCI Domain 2 104 105 61.5 9.3e-17 1 CL0123
Cotton_A_31222_CDS 14 425 14 425 PF03140.15 DUF247 Family 1 397 397 321.3 1e-95 1 No_clan
Cotton_A_21596_CDS 9 68 8 68 PF04968.12 CHORD Family 2 63 63 84.1 8.4e-24 1 No_clan
Cotton_A_21596_CDS 154 214 153 214 PF04968.12 CHORD Family 2 63 63 80.6 1.1e-22 1 No_clan
Cotton_A_33692_CDS 142 183 142 185 PF13639.6 zf-RING_2 Domain 1 40 44 37.5 2.3e-09 1 CL0229
Cotton_A_22850_CDS 14 128 14 128 PF02136.20 NTF2 Domain 1 120 120 87.7 8e-25 1 CL0051
Cotton_A_22850_CDS 308 365 308 376 PF00076.22 RRM_1 Domain 1 57 70 38.7 6.4e-10 1 CL0221
Cotton_A_26270_CDS 6 134 4 135 PF02365.15 NAM Family 3 125 126 101.0 8.9e-29 1 No_clan
Cotton_A_04513_CDS 9 102 3 104 PF07732.15 Cu-oxidase_3 Domain 23 117 119 109.0 1.4e-31 1 CL0026
Cotton_A_04513_CDS 115 265 114 266 PF00394.22 Cu-oxidase Domain 2 158 159 134.6 3.2e-39 1 CL0026
Cotton_A_04513_CDS 390 510 362 511 PF07731.14 Cu-oxidase_2 Domain 23 136 137 141.3 1.6e-41 1 CL0026
Cotton_A_04298_CDS 43 144 41 146 PF03547.18 Mem_trans Family 3 103 387 76.8 1e-21 1 CL0064
Cotton_A_04686_CDS 46 289 45 289 PF00141.23 peroxidase Domain 2 229 229 206.2 5.3e-61 1 CL0617
Cotton_A_01021_CDS 151 172 151 172 PF00642.24 zf-CCCH Family 4 26 27 25.6 8.3e-06 1 CL0537
Cotton_A_01021_CDS 279 326 276 336 PF00076.22 RRM_1 Domain 10 60 70 28.2 1.2e-06 1 CL0221
Cotton_A_14515_CDS 6 90 5 90 PF03871.14 RNA_pol_Rpb5_N Domain 2 89 89 118.4 1.5e-34 1 CL0236
Cotton_A_14515_CDS 133 205 133 205 PF01191.19 RNA_pol_Rpb5_C Domain 1 73 73 117.1 2.3e-34 1 No_clan
Cotton_A_16241_CDS 13 28 12 31 PF13202.6 EF-hand_5 Domain 7 22 25 11.7 0.14 1 CL0220
Cotton_A_16241_CDS 43 69 20 70 PF13833.6 EF-hand_8 Domain 28 54 55 14.3 0.026 1 CL0220
Cotton_A_16241_CDS 77 140 76 140 PF13499.6 EF-hand_7 Domain 2 71 71 49.2 5.2e-13 1 CL0220
Cotton_A_02227_CDS 60 96 54 115 PF00651.31 BTB Domain 41 79 111 26.9 4.5e-06 1 CL0033
Cotton_A_30620_CDS 8 27 7 29 PF00796.18 PSI_8 Family 2 21 25 35.8 5.1e-09 1 No_clan
Cotton_A_37466_CDS 140 254 133 259 PF02577.14 DNase-RNase Family 13 123 129 79.1 2.1e-22 1 No_clan
Cotton_A_17346_CDS 162 665 162 665 PF03141.16 Methyltransf_29 Family 1 506 506 734.9 4e-221 1 CL0063
Cotton_A_20039_CDS 10 252 9 254 PF00139.19 Lectin_legB Domain 2 247 249 236.7 2.8e-70 1 CL0004
Cotton_A_20039_CDS 327 406 326 410 PF00069.25 Pkinase Domain 2 83 264 53.2 2.7e-14 1 CL0016
Cotton_A_20039_CDS 409 558 406 560 PF00069.25 Pkinase Domain 117 260 264 76.8 1.6e-21 1 CL0016
Cotton_A_31050_CDS 36 96 3 198 PF05097.12 DUF688 Family 54 96 446 21.8 8.8e-05 1 No_clan
Cotton_A_25862_CDS 404 454 403 454 PF06886.11 TPX2 Family 2 57 57 50.0 2.6e-13 1 No_clan
Cotton_A_38044_CDS 5 155 5 156 PF00407.19 Bet_v_1 Domain 1 150 151 191.6 6.9e-57 1 CL0209
Cotton_A_08123_CDS 151 305 134 344 PF01852.19 START Domain 20 170 209 27.3 2.1e-06 1 CL0209
Cotton_A_07516_CDS 107 242 107 255 PF00300.22 His_Phos_1 Domain 1 131 194 75.5 4.4e-21 1 CL0071
Cotton_A_24720_CDS 150 265 120 265 PF02544.16 Steroid_dh Family 33 150 150 96.9 1e-27 1 CL0115
Cotton_A_34157_CDS 49 90 48 90 PF03790.13 KNOX1 Family 2 43 43 76.5 9.3e-22 1 No_clan
Cotton_A_34157_CDS 105 147 103 149 PF03791.13 KNOX2 Family 4 46 48 67.1 6.9e-19 1 No_clan
Cotton_A_34157_CDS 191 212 191 212 PF03789.13 ELK Domain 1 22 22 33.4 3.2e-08 1 No_clan
Cotton_A_34157_CDS 231 270 231 270 PF05920.11 Homeobox_KN Family 1 40 40 60.4 1.1e-16 1 CL0123
Cotton_A_11835_CDS 107 271 18 272 PF02536.14 mTERF Family 104 260 314 70.1 1.5e-19 1 No_clan
Cotton_A_11835_CDS 260 427 258 427 PF02536.14 mTERF Family 144 314 314 110.9 5.5e-32 1 No_clan
Cotton_A_08601_CDS 49 114 49 116 PF16209.5 PhoLip_ATPase_N Family 1 65 67 74.6 3.6e-21 1 No_clan
Cotton_A_08601_CDS 586 669 563 672 PF13246.6 Cation_ATPase Family 21 87 91 38.7 8.1e-10 1 CL0137
Cotton_A_08601_CDS 928 1178 928 1179 PF16212.5 PhoLip_ATPase_C Family 1 248 249 268.1 8.5e-80 1 No_clan
Cotton_A_01271_CDS 56 216 40 218 PF04851.15 ResIII Family 17 169 171 53.2 3.5e-14 1 CL0023
Cotton_A_01271_CDS 411 517 398 519 PF00271.31 Helicase_C Family 12 109 111 70.1 1.8e-19 1 CL0023
Cotton_A_01271_CDS 583 668 583 670 PF03368.14 Dicer_dimer Domain 1 90 92 86.1 1.3e-24 1 CL0196
Cotton_A_01271_CDS 1004 1134 1004 1134 PF00636.26 Ribonuclease_3 Family 1 105 105 73.0 2.5e-20 1 CL0539
Cotton_A_01271_CDS 1210 1318 1210 1318 PF00636.26 Ribonuclease_3 Family 1 105 105 73.5 1.9e-20 1 CL0539
Cotton_A_01271_CDS 1533 1607 1531 1607 PF14709.7 DND1_DSRM Domain 3 80 80 51.3 1e-13 1 CL0196
Cotton_A_20365_CDS 66 127 66 127 PF00226.31 DnaJ Domain 1 63 63 67.1 1.1e-18 1 CL0392
Cotton_A_20365_CDS 437 643 434 643 PF11926.8 DUF3444 Family 4 212 212 255.5 3.7e-76 1 No_clan
Cotton_A_02242_CDS 172 338 172 338 PF13359.6 DDE_Tnp_4 Domain 1 158 158 91.7 3.6e-26 1 CL0219
Cotton_A_32440_CDS 107 226 100 226 PF06244.12 Ccdc124 Family 6 129 129 126.1 1.2e-36 1 CL0114
Cotton_A_04725_CDS 21 148 19 149 PF00134.23 Cyclin_N Domain 3 126 127 78.9 2.7e-22 1 CL0065
Cotton_A_04725_CDS 151 254 151 273 PF02984.19 Cyclin_C Domain 1 98 119 41.9 9.3e-11 1 CL0065
Cotton_A_40293_CDS 239 436 239 436 PF10312.9 Cactin_mid Family 1 198 198 196.7 3.3e-58 1 No_clan
Cotton_A_40293_CDS 587 711 587 711 PF09732.9 CactinC_cactus Domain 1 125 125 205.8 1.5e-61 1 No_clan
Cotton_A_26945_CDS 161 189 161 191 PF01535.20 PPR Family 1 29 31 28.3 1.3e-06 1 CL0020
Cotton_A_26945_CDS 260 308 260 309 PF13041.6 PPR_2 Repeat 1 49 50 41.9 8.4e-11 1 CL0020
Cotton_A_26945_CDS 361 409 361 410 PF13041.6 PPR_2 Repeat 1 49 50 34.2 2.1e-08 1 CL0020
Cotton_A_26945_CDS 436 460 435 463 PF01535.20 PPR Family 2 26 31 19.1 0.0011 1 CL0020
Cotton_A_26945_CDS 506 531 503 531 PF01535.20 PPR Family 6 31 31 11.2 0.36 1 CL0020
Cotton_A_14179_CDS 60 144 59 144 PF14159.6 CAAD Domain 2 85 85 94.1 3.5e-27 1 No_clan
Cotton_A_23623_CDS 3 113 2 113 PF03966.16 Trm112p Domain 2 68 68 59.7 3.2e-16 1 CL0167
Cotton_A_15009_CDS 129 380 110 382 PF00225.23 Kinesin Domain 28 287 333 230.9 1.9e-68 1 CL0023
Cotton_A_15009_CDS 400 446 399 446 PF00225.23 Kinesin Domain 287 333 333 46.0 3.3e-12 1 CL0023
Cotton_A_08428_CDS 30 234 30 234 PF06999.12 Suc_Fer-like Family 1 195 195 148.4 2.2e-43 1 No_clan
Cotton_A_38971_CDS 79 149 77 160 PF00295.17 Glyco_hydro_28 Domain 253 321 325 45.6 4.7e-12 1 CL0268
Cotton_A_29066_CDS 71 193 69 194 PF14309.6 DUF4378 Family 5 142 165 42.8 6.6e-11 1 No_clan
Cotton_A_05217_CDS 8 128 8 128 PF01778.17 Ribosomal_L28e Family 1 115 115 123.8 5.7e-36 1 No_clan
Cotton_A_15703_CDS 3 56 1 57 PF14111.6 DUF4283 Domain 91 144 145 35.0 9e-09 1 No_clan
Cotton_A_31775_CDS 14 150 12 151 PF04970.13 LRAT Domain 3 126 127 102.1 2.6e-29 1 CL0125
Cotton_A_18382_CDS 15 62 15 62 PF00249.31 Myb_DNA-binding Domain 1 46 46 62.2 3.9e-17 1 CL0123
Cotton_A_18382_CDS 68 113 68 113 PF00249.31 Myb_DNA-binding Domain 1 46 46 53.0 2.8e-14 1 CL0123
Cotton_A_07773_CDS 92 135 92 136 PF01585.23 G-patch Family 1 44 45 53.0 2.3e-14 1 CL0449
Cotton_A_07773_CDS 211 263 210 263 PF13821.6 DUF4187 Domain 2 54 54 65.9 1.9e-18 1 No_clan
Cotton_A_15025_CDS 25 103 23 104 PF00352.21 TBP Domain 3 83 85 106.9 3.7e-31 1 CL0407
Cotton_A_15025_CDS 130 212 130 213 PF00352.21 TBP Domain 1 84 85 112.0 9.7e-33 1 CL0407
Cotton_A_12301_CDS 95 121 94 121 PF05678.14 VQ Motif 2 28 28 41.8 5.1e-11 1 No_clan
Cotton_A_17798_CDS 4 36 4 41 PF02150.16 RNA_POL_M_15KD Domain 1 31 36 45.1 6.5e-12 1 CL0167
Cotton_A_17798_CDS 75 113 74 113 PF01096.18 TFIIS_C Domain 2 39 39 43.3 2.3e-11 1 CL0167
Cotton_A_19688_CDS 14 174 14 175 PF00071.22 Ras Domain 1 161 162 209.2 2.7e-62 1 CL0023
Cotton_A_12683_CDS 22 148 22 148 PF02365.15 NAM Family 1 126 126 130.5 6.6e-38 1 No_clan
Cotton_A_31277_CDS 5 124 2 147 PF00082.22 Peptidase_S8 Domain 56 173 298 41.1 1.2e-10 1 No_clan
Cotton_A_24751_CDS 17 67 16 68 PF00847.20 AP2 Domain 2 53 54 38.0 1.4e-09 1 CL0081
Cotton_A_07150_CDS 336 607 335 607 PF13934.6 ELYS Family 2 220 220 179.6 8.6e-53 1 No_clan
Cotton_A_36510_CDS 165 247 163 252 PF00153.27 Mito_carr Family 3 91 97 59.5 2.3e-16 1 No_clan
Cotton_A_36510_CDS 258 345 256 348 PF00153.27 Mito_carr Family 3 94 97 66.2 1.8e-18 1 No_clan
Cotton_A_36510_CDS 372 460 370 463 PF00153.27 Mito_carr Family 3 94 97 60.9 8.2e-17 1 No_clan
Cotton_A_05387_CDS 51 323 51 323 PF02309.16 AUX_IAA Family 1 237 237 290.8 9.4e-87 1 CL0072
Cotton_A_08861_CDS 156 470 156 471 PF10250.9 O-FucT Family 1 335 336 223.9 4.5e-66 1 CL0113
Cotton_A_04557_CDS 103 221 102 222 PF00622.28 SPRY Family 2 119 120 65.4 4.9e-18 1 CL0004
Cotton_A_04557_CDS 300 447 298 451 PF10607.9 CLTH Domain 3 143 148 75.8 3.1e-21 1 No_clan
Cotton_A_20782_CDS 82 263 82 265 PF12530.8 DUF3730 Family 1 143 229 107.2 9.3e-31 1 No_clan
Cotton_A_24294_CDS 183 383 157 394 PF10236.9 DAP3 Family 18 207 312 102.1 3.3e-29 1 CL0023
Cotton_A_23211_CDS 153 234 153 236 PF13225.6 DUF4033 Family 1 87 89 117.9 1.4e-34 1 No_clan
Cotton_A_07796_CDS 26 64 24 65 PF08263.12 LRRNT_2 Family 3 40 41 49.0 5.3e-13 1 No_clan
Cotton_A_07796_CDS 118 178 118 178 PF13855.6 LRR_8 Repeat 1 61 61 39.3 4e-10 1 CL0022
Cotton_A_07796_CDS 240 260 240 266 PF00560.33 LRR_1 Repeat 1 21 23 11.3 0.44 1 CL0022
Cotton_A_07796_CDS 457 478 456 478 PF00560.33 LRR_1 Repeat 2 23 23 11.5 0.38 1 CL0022
Cotton_A_07796_CDS 597 862 592 862 PF07714.17 Pkinase_Tyr Domain 6 259 259 125.4 2.4e-36 1 CL0016
Cotton_A_35736_CDS 62 222 62 222 PF01554.18 MatE Family 1 161 161 114.5 3.5e-33 1 CL0222
Cotton_A_35736_CDS 284 442 283 445 PF01554.18 MatE Family 2 157 161 105.2 2.6e-30 1 CL0222
Cotton_A_13543_CDS 60 105 60 106 PF00249.31 Myb_DNA-binding Domain 1 45 46 55.5 4.8e-15 1 CL0123
Cotton_A_13543_CDS 112 155 112 157 PF00249.31 Myb_DNA-binding Domain 1 44 46 57.1 1.5e-15 1 CL0123
Cotton_A_15318_CDS 6 201 1 203 PF03959.13 FSH1 Domain 3 210 212 162.7 9.4e-48 1 CL0028
Cotton_A_18778_CDS 14 139 12 151 PF05687.13 BES1_N Family 3 129 152 202.7 3.7e-60 1 No_clan
Cotton_A_06942_CDS 15 76 15 79 PF13499.6 EF-hand_7 Domain 1 68 71 43.0 4.8e-11 1 CL0220
Cotton_A_31338_CDS 46 464 39 484 PF00067.22 p450 Domain 8 442 463 244.4 2e-72 1 No_clan
Cotton_A_14941_CDS 133 345 70 355 PF00481.21 PP2C Family 70 249 258 132.9 1.5e-38 1 CL0238
Cotton_A_32312_CDS 15 109 15 109 PF12776.7 Myb_DNA-bind_3 Domain 1 96 96 112.1 1.8e-32 1 CL0123
Cotton_A_32312_CDS 178 272 178 272 PF12776.7 Myb_DNA-bind_3 Domain 1 96 96 89.3 2.5e-25 1 CL0123
Cotton_A_32312_CDS 342 436 342 436 PF12776.7 Myb_DNA-bind_3 Domain 1 96 96 94.6 5.6e-27 1 CL0123
Cotton_A_32312_CDS 507 600 506 600 PF12776.7 Myb_DNA-bind_3 Domain 2 96 96 82.6 3e-23 1 CL0123
Cotton_A_32312_CDS 659 752 658 752 PF12776.7 Myb_DNA-bind_3 Domain 2 96 96 90.4 1.1e-25 1 CL0123
Cotton_A_35020_CDS 20 108 12 142 PF18052.1 Rx_N Domain 3 84 93 77.9 5.4e-22 1 No_clan
Cotton_A_35020_CDS 183 423 182 424 PF00931.22 NB-ARC Domain 2 251 252 186.5 4.7e-55 1 CL0023
Cotton_A_40602_CDS 88 451 88 456 PF00365.20 PFK Domain 1 279 284 100.8 8.3e-29 1 CL0240
Cotton_A_34436_CDS 1 114 1 116 PF08284.11 RVP_2 Domain 21 134 136 102.0 2.1e-29 1 CL0129
Cotton_A_34436_CDS 122 272 113 273 PF00078.27 RVT_1 Family 15 221 222 93.5 1.3e-26 1 CL0027
Cotton_A_34436_CDS 336 419 336 424 PF17919.1 RT_RNaseH_2 Domain 1 89 100 92.7 1.1e-26 1 CL0219
Cotton_A_34436_CDS 473 525 472 525 PF17921.1 Integrase_H2C2 Domain 2 52 58 52.0 5.7e-14 1 CL0361
Cotton_A_23778_CDS 34 193 34 193 PF03367.13 zf-ZPR1 Family 1 159 159 185.1 7.9e-55 1 CL0167
Cotton_A_23778_CDS 287 445 287 446 PF03367.13 zf-ZPR1 Family 1 158 159 181.5 1e-53 1 CL0167
Cotton_A_34025_CDS 135 241 133 246 PF16796.5 Microtub_bd Domain 7 101 149 90.6 9e-26 1 CL0023
Cotton_A_11168_CDS 203 236 202 239 PF03638.15 TCR Domain 2 35 38 41.9 9.1e-11 1 No_clan
Cotton_A_15014_CDS 14 80 14 96 PF12776.7 Myb_DNA-bind_3 Domain 1 68 96 45.2 1.4e-11 1 CL0123
Cotton_A_04814_CDS 465 690 408 741 PF03635.17 Vps35 Family 314 556 730 31.4 7.5e-08 1 No_clan
Cotton_A_18192_CDS 123 144 122 144 PF00560.33 LRR_1 Repeat 2 23 23 15.4 0.019 1 CL0022
Cotton_A_18192_CDS 313 574 308 577 PF00069.25 Pkinase Domain 6 260 264 150.1 7.1e-44 1 CL0016
Cotton_A_09089_CDS 267 343 266 345 PF00564.24 PB1 Domain 2 81 84 43.5 2.2e-11 1 CL0072
Cotton_A_37585_CDS 11 72 3 72 PF00026.23 Asp Family 232 289 315 44.2 1.6e-11 1 CL0129
Cotton_A_26017_CDS 32 112 28 123 PF00067.22 p450 Domain 25 109 463 26.0 3.7e-06 1 No_clan
Cotton_A_09024_CDS 43 108 30 112 PF00153.27 Mito_carr Family 19 92 97 42.8 3.7e-11 1 No_clan
Cotton_A_09024_CDS 124 215 121 217 PF00153.27 Mito_carr Family 4 95 97 70.4 9.2e-20 1 No_clan
Cotton_A_09024_CDS 233 325 229 326 PF00153.27 Mito_carr Family 5 96 97 67.5 7.1e-19 1 No_clan
Cotton_A_07400_CDS 30 67 29 67 PF08263.12 LRRNT_2 Family 2 41 41 21.3 0.00024 1 No_clan
Cotton_A_07400_CDS 95 151 94 152 PF13855.6 LRR_8 Repeat 2 59 61 38.0 1e-09 1 CL0022
Cotton_A_07400_CDS 350 367 329 367 PF08263.12 LRRNT_2 Family 22 41 41 5.4 24 1 No_clan
Cotton_A_07400_CDS 600 847 596 874 PF07714.17 Pkinase_Tyr Domain 5 256 259 162.0 1.6e-47 1 CL0016
Cotton_A_33524_CDS 14 105 13 117 PF03226.14 Yippee-Mis18 Domain 3 90 105 49.7 3.5e-13 1 CL0080
Cotton_A_24980_CDS 4 101 3 101 PF00438.20 S-AdoMet_synt_N Domain 2 99 99 144.4 1.4e-42 1 No_clan
Cotton_A_24980_CDS 118 238 117 238 PF02772.16 S-AdoMet_synt_M Domain 2 120 120 159.7 3.2e-47 1 No_clan
Cotton_A_24980_CDS 240 381 240 382 PF02773.16 S-AdoMet_synt_C Domain 1 137 138 208.3 4e-62 1 No_clan
Cotton_A_31071_CDS 29 60 27 61 PF08263.12 LRRNT_2 Family 3 38 41 19.9 0.00069 1 No_clan
Cotton_A_31071_CDS 115 173 114 174 PF13855.6 LRR_8 Repeat 2 60 61 36.3 3.4e-09 1 CL0022
Cotton_A_33132_CDS 72 155 70 155 PF14389.6 Lzipper-MIP1 Family 3 84 84 85.8 1.9e-24 1 No_clan
Cotton_A_33132_CDS 407 541 406 541 PF04784.14 DUF547 Family 2 123 123 146.3 4.3e-43 1 No_clan
Cotton_A_33350_CDS 108 533 108 541 PF00854.21 PTR2 Family 1 386 395 343.8 1.1e-102 1 CL0015
Cotton_A_16154_CDS 12 64 7 114 PF00163.19 Ribosomal_S4 Family 5 81 83 29.2 1.3e-06 1 CL0492
Cotton_A_16154_CDS 109 152 109 155 PF01479.25 S4 Domain 1 44 48 47.8 8.5e-13 1 CL0492
Cotton_A_19216_CDS 85 193 85 193 PF00255.19 GSHPx Family 1 108 108 143.5 1.6e-42 1 CL0172
Cotton_A_16539_CDS 22 332 22 332 PF00332.18 Glyco_hydro_17 Domain 1 313 313 402.2 1.8e-120 1 CL0058
Cotton_A_10170_CDS 5 139 5 140 PF02365.15 NAM Family 1 125 126 105.4 3.7e-30 1 No_clan
Cotton_A_24531_CDS 20 72 20 72 PF03107.16 C1_2 Domain 1 47 47 43.0 4.2e-11 1 CL0006
Cotton_A_13977_CDS 1 97 1 97 PF03242.13 LEA_3 Family 1 93 93 106.2 1.1e-30 1 No_clan
Cotton_A_14403_CDS 6 45 4 47 PF08879.10 WRC Domain 3 41 43 29.2 5.5e-07 1 No_clan
Cotton_A_14403_CDS 808 905 798 905 PF02373.22 JmjC Domain 22 114 114 53.7 2.5e-14 1 CL0029
Cotton_A_14403_CDS 1123 1258 1123 1258 PF01967.21 MoaC Family 1 136 136 171.2 1.1e-50 1 No_clan
Cotton_A_17687_CDS 82 103 80 104 PF05678.14 VQ Motif 3 24 28 31.5 8.9e-08 1 No_clan
Cotton_A_15064_CDS 157 223 152 225 PF00575.23 S1 Domain 6 73 75 44.9 1.1e-11 1 CL0021
Cotton_A_15064_CDS 462 611 451 616 PF00270.29 DEAD Domain 5 170 176 30.6 2.6e-07 1 CL0023
Cotton_A_15064_CDS 653 785 646 785 PF00271.31 Helicase_C Family 8 111 111 46.9 2.8e-12 1 CL0023
Cotton_A_15064_CDS 847 935 847 935 PF04408.23 HA2 Domain 1 108 108 88.0 4.5e-25 1 No_clan
Cotton_A_15064_CDS 993 1068 993 1070 PF07717.16 OB_NTP_bind Domain 1 81 83 87.0 8.1e-25 1 CL0021
Cotton_A_33457_CDS 44 189 9 203 PF12348.8 CLASP_N Family 56 206 227 27.9 1.5e-06 1 CL0020
Cotton_A_33457_CDS 284 500 283 501 PF12348.8 CLASP_N Family 2 226 227 159.2 1.1e-46 1 CL0020
Cotton_A_17794_CDS 61 347 58 347 PF01095.19 Pectinesterase Family 3 298 298 228.8 5.6e-68 1 CL0268
Cotton_A_21918_CDS 55 166 55 167 PF14226.6 DIOX_N Family 1 117 118 72.4 5.2e-20 1 CL0029
Cotton_A_21918_CDS 210 272 208 281 PF03171.20 2OG-FeII_Oxy Domain 3 57 101 37.8 2e-09 1 CL0029
Cotton_A_32966_CDS 41 246 41 246 PF00804.25 Syntaxin Domain 1 200 200 232.4 3.6e-69 1 CL0445
Cotton_A_32966_CDS 249 299 247 299 PF05739.19 SNARE Family 3 53 53 62.8 2.2e-17 1 No_clan
Cotton_A_10244_CDS 197 236 194 238 PF01585.23 G-patch Family 4 43 45 61.8 4e-17 1 CL0449
Cotton_A_18651_CDS 79 192 78 194 PF13793.6 Pribosyltran_N Domain 2 113 116 27.0 3.4e-06 1 CL0533
Cotton_A_18651_CDS 287 371 270 387 PF14572.6 Pribosyl_synth Domain 79 156 184 36.2 5.9e-09 1 CL0533
Cotton_A_14996_CDS 26 103 25 104 PF01282.19 Ribosomal_S24e Family 2 78 79 126.5 2.9e-37 1 No_clan
Cotton_A_38716_CDS 11 51 10 58 PF00319.18 SRF-TF Domain 2 42 48 52.9 1.9e-14 1 No_clan
Cotton_A_20820_CDS 182 621 181 621 PF06087.12 Tyr-DNA_phospho Family 2 424 424 343.7 1.5e-102 1 CL0479
Cotton_A_34040_CDS 13 163 2 167 PF00931.22 NB-ARC Domain 96 248 252 108.6 2.9e-31 1 CL0023
Cotton_A_03738_CDS 45 83 42 84 PF00046.29 Homeodomain Domain 19 56 57 28.2 1.2e-06 1 CL0123
Cotton_A_03738_CDS 391 446 391 446 PF02791.17 DDT Family 1 60 60 38.9 7.7e-10 1 No_clan
Cotton_A_03738_CDS 666 706 664 707 PF15612.6 WHIM1 Family 3 43 46 37.4 1.2e-09 1 No_clan
Cotton_A_03738_CDS 799 872 798 873 PF15613.6 WSD Family 2 98 99 47.6 1.8e-12 1 No_clan
Cotton_A_19085_CDS 54 417 54 417 PF12819.7 Malectin_like Domain 1 336 336 123.1 1.3e-35 1 CL0202
Cotton_A_19085_CDS 541 742 538 808 PF07714.17 Pkinase_Tyr Domain 4 208 259 158.0 2.6e-46 1 CL0016
Cotton_A_10230_CDS 31 120 31 120 PF05922.16 Inhibitor_I9 Domain 1 82 82 81.2 6.5e-23 1 CL0570
Cotton_A_10230_CDS 145 601 145 601 PF00082.22 Peptidase_S8 Domain 1 256 298 115.0 3.9e-33 1 No_clan
Cotton_A_23296_CDS 14 119 13 121 PF01776.17 Ribosomal_L22e Family 2 106 109 152.2 5.6e-45 1 No_clan
Cotton_A_23296_CDS 249 413 249 414 PF01699.24 Na_Ca_ex Family 1 149 151 77.2 1.2e-21 1 No_clan
Cotton_A_27362_CDS 92 285 92 285 PF01300.18 Sua5_yciO_yrdC Family 1 179 179 154.8 1.5e-45 1 No_clan
Cotton_A_27306_CDS 5 141 5 142 PF00179.26 UQ_con Domain 1 139 140 184.8 5.7e-55 1 CL0208
Cotton_A_20020_CDS 24 352 24 352 PF00933.21 Glyco_hydro_3 Domain 1 319 319 251.1 1.6e-74 1 CL0058
Cotton_A_20020_CDS 389 598 389 598 PF01915.22 Glyco_hydro_3_C Domain 1 204 204 119.7 1.6e-34 1 No_clan
Cotton_A_12565_CDS 34 182 32 183 PF07714.17 Pkinase_Tyr Domain 3 151 259 115.5 2.4e-33 1 CL0016
Cotton_A_05803_CDS 16 443 16 447 PF02458.15 Transferase Family 1 430 434 386.9 1e-115 1 CL0149
Cotton_A_30728_CDS 23 64 22 64 PF08263.12 LRRNT_2 Family 2 41 41 38.5 1e-09 1 No_clan
Cotton_A_30728_CDS 266 287 266 288 PF00560.33 LRR_1 Repeat 1 22 23 9.8 1.3 1 CL0022
Cotton_A_30728_CDS 728 750 728 750 PF00560.33 LRR_1 Repeat 1 23 23 12.0 0.26 1 CL0022
Cotton_A_22057_CDS 25 52 24 52 PF01535.20 PPR Family 4 31 31 15.8 0.012 1 CL0020
Cotton_A_23287_CDS 53 200 50 201 PF04043.15 PMEI Domain 4 153 154 101.3 6.2e-29 1 No_clan
Cotton_A_23287_CDS 248 545 248 545 PF01095.19 Pectinesterase Family 1 298 298 491.5 5.5e-148 1 CL0268
Cotton_A_27943_CDS 100 337 100 357 PF01370.21 Epimerase Family 1 231 241 173.2 6.3e-51 1 CL0063
Cotton_A_18776_CDS 268 361 263 362 PF01399.27 PCI Domain 6 104 105 65.4 5.6e-18 1 CL0123
Cotton_A_03432_CDS 226 256 224 256 PF00634.18 BRCA2 Family 3 33 33 28.4 9.5e-07 1 No_clan
Cotton_A_03432_CDS 509 582 485 583 PF09169.10 BRCA-2_helical Domain 112 186 187 72.4 3.6e-20 1 No_clan
Cotton_A_03432_CDS 586 712 586 712 PF09103.10 BRCA-2_OB1 Domain 1 123 123 129.3 7.2e-38 1 CL0021
Cotton_A_16011_CDS 54 79 53 79 PF00642.24 zf-CCCH Family 2 27 27 30.2 3e-07 1 CL0537
Cotton_A_16011_CDS 111 130 110 130 PF00642.24 zf-CCCH Family 8 27 27 32.1 7.4e-08 1 CL0537
Cotton_A_16011_CDS 152 176 150 176 PF00642.24 zf-CCCH Family 3 27 27 37.7 1.4e-09 1 CL0537
Cotton_A_16011_CDS 312 337 311 337 PF00642.24 zf-CCCH Family 2 27 27 35.2 7.7e-09 1 CL0537
Cotton_A_16011_CDS 358 383 357 383 PF00642.24 zf-CCCH Family 2 27 27 40.4 1.9e-10 1 CL0537
Cotton_A_07194_CDS 133 371 132 371 PF12146.8 Hydrolase_4 Family 2 239 239 230.0 2.4e-68 1 CL0028
Cotton_A_33725_CDS 36 149 35 151 PF07732.15 Cu-oxidase_3 Domain 2 117 119 138.5 9.6e-41 1 CL0026
Cotton_A_33725_CDS 161 296 161 297 PF00394.22 Cu-oxidase Domain 1 158 159 125.1 2.6e-36 1 CL0026
Cotton_A_33725_CDS 409 518 379 519 PF07731.14 Cu-oxidase_2 Domain 31 136 137 84.8 4.3e-24 1 CL0026
Cotton_A_25699_CDS 21 55 20 58 PF12937.7 F-box-like Domain 2 35 48 28.8 8.1e-07 1 CL0271
Cotton_A_35073_CDS 20 214 20 219 PF00069.25 Pkinase Domain 1 188 264 149.1 1.5e-43 1 CL0016
Cotton_A_27078_CDS 52 111 49 111 PF13855.6 LRR_8 Repeat 1 61 61 30.4 2.3e-07 1 CL0022
Cotton_A_27078_CDS 209 269 209 269 PF13855.6 LRR_8 Repeat 1 61 61 29.1 5.9e-07 1 CL0022
Cotton_A_27078_CDS 281 337 280 339 PF13855.6 LRR_8 Repeat 2 59 61 35.0 8.6e-09 1 CL0022
Cotton_A_27078_CDS 482 652 477 658 PF00069.25 Pkinase Domain 6 169 264 120.1 1e-34 1 CL0016
Cotton_A_22045_CDS 43 128 43 129 PF08700.11 Vps51 Family 1 86 87 78.5 2.9e-22 1 CL0295
Cotton_A_07791_CDS 203 250 201 250 PF00010.26 HLH Domain 4 53 53 25.1 1.2e-05 1 No_clan
Cotton_A_03751_CDS 659 1054 656 1056 PF02181.23 FH2 Family 4 370 372 412.5 1.7e-123 1 No_clan
Cotton_A_12954_CDS 48 165 48 166 PF13537.6 GATase_7 Domain 1 122 123 128.1 1.6e-37 1 CL0052
Cotton_A_12954_CDS 210 360 209 363 PF00733.21 Asn_synthase Domain 2 144 355 191.7 2.8e-56 1 CL0039
Cotton_A_25535_CDS 99 169 99 169 PF00076.22 RRM_1 Domain 1 70 70 64.5 5.7e-18 1 CL0221
Cotton_A_25535_CDS 179 240 179 247 PF00076.22 RRM_1 Domain 1 59 70 24.2 2.2e-05 1 CL0221
Cotton_A_25535_CDS 273 342 273 343 PF00076.22 RRM_1 Domain 1 69 70 50.8 1e-13 1 CL0221
Cotton_A_07683_CDS 429 453 428 458 PF05553.11 DUF761 Family 3 27 36 36.6 2.3e-09 1 No_clan
Cotton_A_20085_CDS 962 1030 899 1039 PF08767.11 CRM1_C Family 124 192 321 23.3 3.2e-05 1 CL0020
Cotton_A_08888_CDS 14 58 12 60 PF00249.31 Myb_DNA-binding Domain 3 42 46 27.2 3.2e-06 1 CL0123
Cotton_A_03319_CDS 14 87 14 91 PF14569.6 zf-UDP Domain 1 74 78 126.2 4e-37 1 CL0229
Cotton_A_03319_CDS 343 823 343 897 PF03552.14 Cellulose_synt Family 1 477 722 907.2 8.4e-273 1 CL0110
Cotton_A_11623_CDS 328 370 327 370 PF13639.6 zf-RING_2 Domain 2 44 44 44.5 1.4e-11 1 CL0229
Cotton_A_16971_CDS 127 187 127 188 PF04844.13 Ovate Family 1 57 58 87.3 4.8e-25 1 No_clan
Cotton_A_24761_CDS 145 328 136 328 PF00544.19 Pec_lyase_C Domain 30 211 211 73.8 1.4e-20 1 CL0268
Cotton_A_10908_CDS 24 274 16 274 PF00069.25 Pkinase Domain 9 264 264 216.7 3.4e-64 1 CL0016
Cotton_A_14592_CDS 23 56 22 56 PF14369.6 zinc_ribbon_9 Domain 2 35 35 49.6 3.4e-13 1 CL0167
Cotton_A_14592_CDS 211 254 211 254 PF13639.6 zf-RING_2 Domain 1 44 44 48.5 7.7e-13 1 CL0229
Cotton_A_16358_CDS 187 200 186 202 PF13516.6 LRR_6 Repeat 2 15 24 9.4 1.2 1 CL0022
Cotton_A_16358_CDS 263 289 263 289 PF00560.33 LRR_1 Repeat 1 23 23 9.8 1.3 1 CL0022
Cotton_A_16358_CDS 409 427 408 429 PF13516.6 LRR_6 Repeat 2 20 24 10.3 0.63 1 CL0022
Cotton_A_16358_CDS 565 625 564 625 PF13855.6 LRR_8 Repeat 2 61 61 34.2 1.5e-08 1 CL0022
Cotton_A_16358_CDS 736 754 736 757 PF00560.33 LRR_1 Repeat 1 19 23 9.5 1.7 1 CL0022
Cotton_A_16358_CDS 925 983 923 983 PF13855.6 LRR_8 Repeat 3 61 61 41.0 1.2e-10 1 CL0022
Cotton_A_17319_CDS 21 118 21 119 PF03195.14 LOB Family 1 98 99 141.1 1.3e-41 1 No_clan
Cotton_A_05011_CDS 39 118 38 170 PF00293.28 NUDIX Domain 2 81 131 43.9 2.2e-11 1 CL0261
Cotton_A_33707_CDS 26 114 22 130 PF00651.31 BTB Domain 9 97 111 26.2 7.1e-06 1 CL0033
Cotton_A_33707_CDS 212 476 212 476 PF03000.14 NPH3 Family 1 258 258 299.7 2e-89 1 No_clan
Cotton_A_03882_CDS 103 242 18 244 PF01086.17 Clathrin_lg_ch Family 110 228 230 42.6 6.9e-11 1 No_clan
Cotton_A_04182_CDS 36 126 34 128 PF00153.27 Mito_carr Family 3 95 97 78.4 2.8e-22 1 No_clan
Cotton_A_04182_CDS 131 217 128 220 PF00153.27 Mito_carr Family 4 94 97 67.4 7.8e-19 1 No_clan
Cotton_A_04182_CDS 227 320 225 322 PF00153.27 Mito_carr Family 3 95 97 82.8 1.2e-23 1 No_clan
Cotton_A_28544_CDS 39 204 38 205 PF13668.6 Ferritin_2 Domain 2 135 136 81.7 5.4e-23 1 CL0044
Cotton_A_38050_CDS 9 80 9 81 PF00173.28 Cyt-b5 Domain 1 73 74 90.3 6.3e-26 1 No_clan
Cotton_A_11854_CDS 290 576 286 576 PF00481.21 PP2C Family 7 258 258 210.6 2.9e-62 1 CL0238
Cotton_A_04163_CDS 44 283 41 284 PF00141.23 peroxidase Domain 4 228 229 263.0 2.4e-78 1 CL0617
Cotton_A_28576_CDS 42 134 41 136 PF01657.17 Stress-antifung Family 2 93 95 64.1 1.4e-17 1 No_clan
Cotton_A_28576_CDS 155 240 150 241 PF01657.17 Stress-antifung Family 8 94 95 40.3 3.7e-10 1 No_clan
Cotton_A_04741_CDS 28 102 27 103 PF01253.22 SUI1 Domain 2 76 77 91.5 3.5e-26 1 No_clan
Cotton_A_00640_CDS 85 141 84 147 PF07716.15 bZIP_2 Family 2 54 54 51.3 8.8e-14 1 CL0018
Cotton_A_13461_CDS 118 174 118 175 PF04844.13 Ovate Family 1 57 58 83.0 1e-23 1 No_clan
Cotton_A_19068_CDS 112 155 111 155 PF13639.6 zf-RING_2 Domain 2 44 44 47.6 1.5e-12 1 CL0229
Cotton_A_39479_CDS 40 115 15 115 PF14368.6 LTP_2 Family 21 97 97 49.2 4.4e-13 1 CL0482
Cotton_A_04115_CDS 52 310 52 310 PF00685.27 Sulfotransfer_1 Domain 1 267 267 211.6 1.4e-62 1 CL0023
Cotton_A_10530_CDS 107 373 102 378 PF00069.25 Pkinase Domain 6 259 264 154.7 2.9e-45 1 CL0016
Cotton_A_21962_CDS 62 308 61 308 PF00109.26 ketoacyl-synt Domain 2 253 253 200.7 2.9e-59 1 CL0046
Cotton_A_21962_CDS 317 428 316 429 PF02801.22 Ketoacyl-synt_C Domain 2 116 118 111.5 2.3e-32 1 CL0046
Cotton_A_11751_CDS 204 325 198 327 PF01529.20 DHHC Family 18 131 134 91.7 4e-26 1 No_clan
Cotton_A_26092_CDS 49 139 47 139 PF00254.28 FKBP_C Domain 3 94 94 114.6 2e-33 1 CL0487
Cotton_A_26092_CDS 177 251 169 252 PF00254.28 FKBP_C Domain 19 93 94 49.9 2.9e-13 1 CL0487
Cotton_A_12599_CDS 28 275 28 280 PF00141.23 peroxidase Domain 1 223 229 250.3 1.7e-74 1 CL0617
Cotton_A_05455_CDS 43 132 17 142 PF00179.26 UQ_con Domain 24 111 140 51.7 6.8e-14 1 CL0208
Cotton_A_13668_CDS 1 80 1 80 PF06364.12 DUF1068 Family 81 160 168 112.5 1.8e-32 1 No_clan
Cotton_A_36274_CDS 25 191 19 261 PF00704.28 Glyco_hydro_18 Domain 24 197 312 61.8 8.8e-17 1 CL0058
Cotton_A_04988_CDS 202 543 202 543 PF04765.13 DUF616 Family 1 314 314 473.6 2.7e-142 1 No_clan
Cotton_A_00997_CDS 87 154 86 154 PF00462.24 Glutaredoxin Domain 2 60 60 36.6 3.9e-09 1 CL0172
Cotton_A_00987_CDS 8 117 8 123 PF12165.8 Alfin Family 1 110 127 194.7 3.6e-58 1 No_clan
Cotton_A_00987_CDS 197 246 197 247 PF00628.29 PHD Domain 1 51 52 43.5 2.1e-11 1 CL0390
Cotton_A_02422_CDS 2 262 1 264 PF05684.12 DUF819 Family 106 376 378 281.3 1.2e-83 1 CL0064
Cotton_A_13332_CDS 80 127 80 128 PF00450.22 Peptidase_S10 Domain 1 48 419 51.7 8.7e-14 1 CL0028
Cotton_A_22568_CDS 186 235 185 236 PF00628.29 PHD Domain 2 51 52 44.4 1.1e-11 1 CL0390
Cotton_A_22568_CDS 244 353 243 353 PF13832.6 zf-HC5HC2H_2 Domain 2 110 110 97.4 5.4e-28 1 CL0390
Cotton_A_02286_CDS 398 532 384 541 PF00534.20 Glycos_transf_1 Family 19 161 172 45.6 5.2e-12 1 CL0113
Cotton_A_02693_CDS 9 182 8 182 PF01145.25 Band_7 Family 2 178 178 98.6 4e-28 1 CL0433
Cotton_A_17860_CDS 12 173 6 174 PF02776.18 TPP_enzyme_N Domain 8 171 172 136.9 5.2e-40 1 CL0254
Cotton_A_17860_CDS 199 325 199 327 PF00205.22 TPP_enzyme_M Domain 1 135 137 116.5 7e-34 1 CL0085
Cotton_A_17860_CDS 399 548 396 548 PF02775.21 TPP_enzyme_C Domain 5 153 153 91.4 4.8e-26 1 CL0254
Cotton_A_00260_CDS 162 289 158 289 PF04696.13 Pinin_SDK_memA Family 5 130 130 113.1 9.1e-33 1 No_clan
Cotton_A_40274_CDS 86 136 85 137 PF00847.20 AP2 Domain 2 53 54 51.2 1.1e-13 1 CL0081
Cotton_A_37896_CDS 9 209 8 209 PF05755.12 REF Family 2 206 206 234.8 8.2e-70 1 No_clan
Cotton_A_18293_CDS 93 142 93 150 PF00675.20 Peptidase_M16 Family 1 50 149 58.8 5.8e-16 1 CL0094
Cotton_A_00052_CDS 260 324 260 325 PF00076.22 RRM_1 Domain 1 69 70 42.2 5.2e-11 1 CL0221
Cotton_A_00052_CDS 345 408 345 410 PF00076.22 RRM_1 Domain 1 68 70 32.2 7.1e-08 1 CL0221
Cotton_A_00052_CDS 744 840 744 840 PF04059.12 RRM_2 Family 1 97 97 176.5 8.7e-53 1 CL0221
Cotton_A_23632_CDS 109 168 108 169 PF02297.17 COX6B Domain 2 75 76 61.0 9.8e-17 1 CL0351
Cotton_A_07816_CDS 118 442 118 451 PF00295.17 Glyco_hydro_28 Domain 1 320 325 321.4 5.8e-96 1 CL0268
Cotton_A_11582_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 46.1 4.1e-12 1 CL0123
Cotton_A_11582_CDS 67 110 67 112 PF00249.31 Myb_DNA-binding Domain 1 44 46 56.2 2.8e-15 1 CL0123
Cotton_A_00306_CDS 77 226 76 226 PF03100.15 CcmE Family 2 128 128 153.3 3e-45 1 CL0021
Cotton_A_00306_CDS 372 417 367 421 PF00240.23 ubiquitin Domain 23 68 72 36.1 4e-09 1 CL0072
Cotton_A_00306_CDS 466 539 464 540 PF02179.16 BAG Family 3 74 75 54.6 1.1e-14 1 No_clan
Cotton_A_29034_CDS 3 370 2 371 PF07690.16 MFS_1 Family 2 352 353 172.9 8.5e-51 1 CL0015
Cotton_A_12657_CDS 1 251 1 252 PF05742.12 TANGO2 Family 1 252 253 233.1 5.3e-69 1 No_clan
Cotton_A_36573_CDS 98 200 94 200 PF14365.6 Neprosin_AP Family 6 118 118 117.6 4.2e-34 1 No_clan
Cotton_A_36573_CDS 213 435 213 435 PF03080.15 Neprosin Family 1 222 222 292.0 2.2e-87 1 No_clan
Cotton_A_27862_CDS 165 208 160 209 PF00010.26 HLH Domain 6 52 53 35.2 9e-09 1 No_clan
Cotton_A_35204_CDS 3 430 1 435 PF00067.22 p450 Domain 22 456 463 304.7 1e-90 1 No_clan
Cotton_A_00195_CDS 9 211 8 213 PF00106.25 adh_short Domain 3 193 195 143.5 5.3e-42 1 CL0063
Cotton_A_00195_CDS 320 382 319 387 PF08240.12 ADH_N Domain 2 67 109 25.7 7.9e-06 1 CL0296
Cotton_A_00195_CDS 438 572 438 574 PF00107.26 ADH_zinc_N Family 1 127 130 94.7 4.1e-27 1 CL0063
Cotton_A_26805_CDS 21 94 16 95 PF16845.5 SQAPI Domain 8 82 83 72.1 3.6e-20 1 CL0121
Cotton_A_33267_CDS 39 347 39 347 PF01074.22 Glyco_hydro_38N Domain 1 289 289 296.9 1.5e-88 1 CL0158
Cotton_A_33267_CDS 352 443 352 444 PF09261.11 Alpha-mann_mid Domain 1 95 96 78.7 2.8e-22 1 CL0599
Cotton_A_33267_CDS 596 803 591 803 PF07748.13 Glyco_hydro_38C Domain 6 214 214 152.0 2.3e-44 1 CL0103
Cotton_A_33267_CDS 885 991 885 992 PF17677.1 Glyco_hydro38C2 Domain 1 68 69 41.5 1e-10 1 CL0369
Cotton_A_20638_CDS 83 224 83 224 PF02365.15 NAM Family 1 126 126 78.9 6.2e-22 1 No_clan
Cotton_A_01963_CDS 5 89 5 115 PF18052.1 Rx_N Domain 1 86 93 82.3 2.2e-23 1 No_clan
Cotton_A_01963_CDS 164 404 162 405 PF00931.22 NB-ARC Domain 3 251 252 221.8 8.1e-66 1 CL0023
Cotton_A_38283_CDS 93 189 92 191 PF02482.19 Ribosomal_S30AE Family 2 84 86 70.7 1.3e-19 1 No_clan
Cotton_A_38283_CDS 243 296 242 296 PF16321.5 Ribosom_S30AE_C Domain 4 57 57 86.8 5.7e-25 1 No_clan
Cotton_A_31914_CDS 48 229 46 248 PF08450.12 SGL Family 3 166 246 28.5 1.1e-06 1 CL0186
Cotton_A_11706_CDS 73 163 72 164 PF02878.16 PGM_PMM_I Domain 59 137 138 57.2 1.4e-15 1 No_clan
Cotton_A_11706_CDS 199 308 198 311 PF02879.16 PGM_PMM_II Domain 2 99 103 50.8 2.1e-13 1 No_clan
Cotton_A_11706_CDS 316 437 316 439 PF02880.16 PGM_PMM_III Domain 1 112 114 97.5 5.2e-28 1 No_clan
Cotton_A_11706_CDS 493 544 471 555 PF00408.20 PGM_PMM_IV Family 23 60 74 28.3 1.5e-06 1 No_clan
Cotton_A_11414_CDS 18 111 17 112 PF10046.9 BLOC1_2 Coiled-coil 2 95 96 100.2 6.1e-29 1 No_clan
Cotton_A_11203_CDS 53 104 51 105 PF04770.12 ZF-HD_dimer Family 3 54 55 102.4 1.2e-29 1 No_clan
Cotton_A_04309_CDS 5 141 5 142 PF00179.26 UQ_con Domain 1 139 140 181.6 5.7e-54 1 CL0208
Cotton_A_03016_CDS 24 144 19 144 PF04852.12 DUF640 Family 6 126 126 216.6 8.7e-65 1 No_clan
Cotton_A_17743_CDS 105 164 105 165 PF03106.15 WRKY Domain 1 58 59 91.7 2.4e-26 1 CL0274
Cotton_A_08148_CDS 31 184 17 202 PF03552.14 Cellulose_synt Family 137 290 722 164.0 5.6e-48 1 CL0110
Cotton_A_08148_CDS 203 521 194 525 PF03552.14 Cellulose_synt Family 384 700 722 179.6 1.1e-52 1 CL0110
Cotton_A_36878_CDS 3 214 1 223 PF00251.20 Glyco_hydro_32N Domain 93 294 305 154.9 3.4e-45 1 CL0143
Cotton_A_36878_CDS 212 404 209 404 PF08244.12 Glyco_hydro_32C Domain 2 158 158 84.9 5.8e-24 1 CL0004
Cotton_A_22936_CDS 21 272 21 272 PF00069.25 Pkinase Domain 1 264 264 255.2 6.3e-76 1 CL0016
Cotton_A_08261_CDS 46 129 45 136 PF01627.23 Hpt Family 2 83 85 51.4 9.5e-14 1 No_clan
Cotton_A_10247_CDS 92 476 91 476 PF04339.12 FemAB_like Family 2 370 370 490.6 3e-147 1 CL0257
Cotton_A_10936_CDS 13 226 12 227 PF05648.14 PEX11 Family 2 222 223 171.6 1.7e-50 1 No_clan
Cotton_A_12663_CDS 2 52 1 55 PF00724.20 Oxidored_FMN Domain 288 339 342 38.1 1.1e-09 1 CL0036
Cotton_A_18292_CDS 223 289 221 292 PF00364.22 Biotin_lipoyl Domain 3 67 73 80.9 4.4e-23 1 CL0105
Cotton_A_07793_CDS 134 181 134 182 PF13041.6 PPR_2 Repeat 1 48 50 43.4 2.9e-11 1 CL0020
Cotton_A_07793_CDS 210 236 210 237 PF01535.20 PPR Family 4 30 31 18.3 0.002 1 CL0020
Cotton_A_07793_CDS 238 266 238 268 PF01535.20 PPR Family 1 29 31 18.8 0.0013 1 CL0020
Cotton_A_07793_CDS 311 336 311 338 PF01535.20 PPR Family 4 29 31 14.6 0.03 1 CL0020
Cotton_A_07793_CDS 337 385 336 386 PF13041.6 PPR_2 Repeat 2 49 50 33.5 3.4e-08 1 CL0020
Cotton_A_07793_CDS 405 437 405 438 PF12854.7 PPR_1 Repeat 1 33 34 27.0 2.7e-06 1 CL0020
Cotton_A_07793_CDS 512 635 512 636 PF14432.6 DYW_deaminase Family 1 126 127 133.4 4.1e-39 1 CL0109
Cotton_A_35319_CDS 72 434 71 437 PF00067.22 p450 Domain 2 372 463 204.3 3.1e-60 1 No_clan
Cotton_A_34878_CDS 4 40 1 43 PF00646.33 F-box Domain 6 42 48 38.7 6.4e-10 1 CL0271
Cotton_A_34878_CDS 211 306 208 365 PF07734.13 FBA_1 Family 4 101 164 26.9 3.8e-06 1 CL0162
Cotton_A_34804_CDS 50 187 50 187 PF02485.21 Branch Family 1 132 247 103.0 1.8e-29 1 CL0110
Cotton_A_23475_CDS 25 259 25 264 PF00450.22 Peptidase_S10 Domain 1 209 419 221.3 2.9e-65 1 CL0028
Cotton_A_23475_CDS 265 351 257 352 PF00450.22 Peptidase_S10 Domain 281 369 419 58.5 7.7e-16 1 CL0028
Cotton_A_04097_CDS 12 159 11 160 PF03358.15 FMN_red Domain 2 154 155 130.9 3.2e-38 1 CL0042
Cotton_A_18700_CDS 72 178 72 179 PF00636.26 Ribonuclease_3 Family 1 104 105 77.4 1.1e-21 1 CL0539
Cotton_A_05348_CDS 41 93 21 95 PF02309.16 AUX_IAA Family 46 99 237 31.5 1.5e-07 1 CL0072
Cotton_A_05348_CDS 96 197 92 199 PF02309.16 AUX_IAA Family 123 235 237 167.0 6e-49 1 CL0072
Cotton_A_30716_CDS 38 277 38 278 PF00141.23 peroxidase Domain 1 228 229 236.1 3.8e-70 1 CL0617
Cotton_A_13527_CDS 40 142 40 143 PF00011.21 HSP20 Family 1 101 102 105.3 1.6e-30 1 CL0190
Cotton_A_11160_CDS 284 550 280 550 PF07714.17 Pkinase_Tyr Domain 5 259 259 155.7 1.4e-45 1 CL0016
Cotton_A_19807_CDS 52 146 46 147 PF04178.12 Got1 Family 5 112 113 38.5 1.3e-09 1 No_clan
Cotton_A_38323_CDS 41 208 27 208 PF14009.6 DUF4228 Family 18 179 179 60.5 2.6e-16 1 No_clan
Cotton_A_22183_CDS 186 241 186 247 PF14559.6 TPR_19 Domain 1 57 68 29.2 9.5e-07 1 CL0020
Cotton_A_26110_CDS 16 336 9 336 PF12819.7 Malectin_like Domain 31 336 336 144.7 3.6e-42 1 CL0202
Cotton_A_26110_CDS 449 643 445 712 PF07714.17 Pkinase_Tyr Domain 6 205 259 162.6 1e-47 1 CL0016
Cotton_A_31631_CDS 122 294 121 295 PF00270.29 DEAD Domain 2 175 176 118.7 2.3e-34 1 CL0023
Cotton_A_31631_CDS 341 450 331 450 PF00271.31 Helicase_C Family 10 111 111 88.5 3.5e-25 1 CL0023
Cotton_A_09023_CDS 56 198 56 198 PF01565.23 FAD_binding_4 Domain 1 139 139 82.8 1.9e-23 1 CL0077
Cotton_A_09023_CDS 230 507 230 507 PF09265.10 Cytokin-bind Domain 1 281 281 370.2 6.6e-111 1 CL0277
Cotton_A_22460_CDS 168 389 153 390 PF00931.22 NB-ARC Domain 17 251 252 157.3 4e-46 1 CL0023
Cotton_A_16901_CDS 27 91 25 98 PF00722.21 Glyco_hydro_16 Domain 3 64 177 46.1 3.6e-12 1 CL0004
Cotton_A_16901_CDS 120 234 114 235 PF00722.21 Glyco_hydro_16 Domain 65 176 177 136.0 9.1e-40 1 CL0004
Cotton_A_16901_CDS 262 306 260 306 PF06955.12 XET_C Family 2 47 47 71.3 4.1e-20 1 CL0004
Cotton_A_13484_CDS 13 67 10 68 PF02701.15 zf-Dof Family 4 58 59 107.5 2.7e-31 1 No_clan
Cotton_A_00168_CDS 81 162 80 162 PF05542.11 DUF760 Family 2 84 84 66.9 1.5e-18 1 No_clan
Cotton_A_00168_CDS 265 379 265 380 PF05542.11 DUF760 Family 1 83 84 97.8 3.3e-28 1 No_clan
Cotton_A_34205_CDS 32 605 31 605 PF02705.16 K_trans Family 2 534 534 640.4 2.1e-192 1 CL0062
Cotton_A_23784_CDS 70 350 67 350 PF00069.25 Pkinase Domain 6 264 264 229.9 3.3e-68 1 CL0016
Cotton_A_07149_CDS 93 137 91 138 PF00249.31 Myb_DNA-binding Domain 3 45 46 40.3 2.6e-10 1 CL0123
Cotton_A_28195_CDS 59 247 58 248 PF00009.27 GTP_EFTU Domain 2 193 194 172.7 6.3e-51 1 CL0023
Cotton_A_28195_CDS 468 553 465 554 PF00679.24 EFG_C Domain 4 88 89 80.7 6.1e-23 1 CL0437
Cotton_A_28195_CDS 555 661 555 661 PF06421.12 LepA_C Family 1 107 107 166.0 2.4e-49 1 No_clan
Cotton_A_06039_CDS 8 85 6 87 PF08700.11 Vps51 Family 3 84 87 55.5 4.4e-15 1 CL0295
Cotton_A_29285_CDS 5 65 1 86 PF01920.20 Prefoldin_2 Coiled-coil 18 78 106 59.9 2e-16 1 CL0200
Cotton_A_15940_CDS 159 309 158 310 PF02544.16 Steroid_dh Family 2 148 150 96.7 1.2e-27 1 CL0115
Cotton_A_33343_CDS 10 150 9 150 PF04603.12 Mog1 Domain 2 138 138 127.3 5e-37 1 CL0619
Cotton_A_12242_CDS 10 57 10 57 PF00249.31 Myb_DNA-binding Domain 1 46 46 61.2 7.5e-17 1 CL0123
Cotton_A_12242_CDS 63 108 63 108 PF00249.31 Myb_DNA-binding Domain 1 46 46 46.5 3e-12 1 CL0123
Cotton_A_17897_CDS 94 134 89 134 PF08387.10 FBD Family 6 46 46 25.2 1.1e-05 1 No_clan
Cotton_A_04314_CDS 39 88 38 88 PF08711.11 Med26 Domain 2 53 53 33.8 2.6e-08 1 No_clan
Cotton_A_04314_CDS 231 269 227 270 PF07500.14 TFIIS_M Domain 72 110 112 36.4 5.8e-09 1 No_clan
Cotton_A_04314_CDS 273 310 273 311 PF01096.18 TFIIS_C Domain 1 38 39 61.4 5.2e-17 1 CL0167
Cotton_A_15351_CDS 35 488 35 494 PF00067.22 p450 Domain 1 457 463 356.0 2.9e-106 1 No_clan
Cotton_A_16530_CDS 15 94 15 94 PF01749.20 IBB Family 1 90 90 63.4 2e-17 1 CL0020
Cotton_A_16530_CDS 106 145 104 145 PF00514.23 Arm Repeat 3 41 41 44.3 1.1e-11 1 CL0020
Cotton_A_16530_CDS 148 186 147 187 PF00514.23 Arm Repeat 2 40 41 42.3 4.7e-11 1 CL0020
Cotton_A_16530_CDS 189 230 189 230 PF00514.23 Arm Repeat 1 41 41 27.5 2.3e-06 1 CL0020
Cotton_A_16530_CDS 243 270 238 271 PF00514.23 Arm Repeat 13 40 41 23.9 2.9e-05 1 CL0020
Cotton_A_16530_CDS 274 312 273 313 PF00514.23 Arm Repeat 2 40 41 37.7 1.4e-09 1 CL0020
Cotton_A_16530_CDS 316 356 315 356 PF00514.23 Arm Repeat 2 41 41 23.6 3.8e-05 1 CL0020
Cotton_A_16530_CDS 359 395 358 398 PF00514.23 Arm Repeat 2 38 41 41.8 7e-11 1 CL0020
Cotton_A_16530_CDS 466 514 466 517 PF16186.5 Arm_3 Family 1 49 53 68.0 3.6e-19 1 CL0020
Cotton_A_34081_CDS 28 132 12 133 PF12014.8 DUF3506 Family 17 138 139 72.7 3e-20 1 No_clan
Cotton_A_24381_CDS 35 133 35 134 PF03195.14 LOB Family 1 98 99 129.3 6.3e-38 1 No_clan
Cotton_A_09635_CDS 54 127 54 127 PF16093.5 PAC4 Family 1 80 80 71.1 6.6e-20 1 No_clan
Cotton_A_23627_CDS 3 156 3 168 PF00875.18 DNA_photolyase Domain 1 154 164 133.6 6.5e-39 1 CL0039
Cotton_A_23627_CDS 279 477 279 479 PF03441.14 FAD_binding_7 Domain 1 200 202 212.1 5.6e-63 1 No_clan
Cotton_A_23627_CDS 507 618 506 618 PF12546.8 Cryptochrome_C Family 2 121 121 123.8 5.7e-36 1 No_clan
Cotton_A_18602_CDS 111 306 111 306 PF00270.29 DEAD Domain 1 176 176 138.8 1.6e-40 1 CL0023
Cotton_A_18602_CDS 347 451 343 452 PF00271.31 Helicase_C Family 5 110 111 79.4 2.4e-22 1 CL0023
Cotton_A_18602_CDS 493 553 493 553 PF13959.6 DUF4217 Domain 1 61 61 61.4 7.3e-17 1 No_clan
Cotton_A_26668_CDS 3 106 1 118 PF00069.25 Pkinase Domain 102 197 264 87.3 1e-24 1 CL0016
Cotton_A_18201_CDS 25 128 24 130 PF13947.6 GUB_WAK_bind Domain 2 103 106 54.2 1.9e-14 1 No_clan
Cotton_A_18201_CDS 300 571 300 574 PF00069.25 Pkinase Domain 1 258 264 172.4 1.1e-50 1 CL0016
Cotton_A_15452_CDS 39 316 39 316 PF04674.12 Phi_1 Family 1 276 276 418.5 1.1e-125 1 No_clan
Cotton_A_20554_CDS 59 108 2 116 PF04081.13 DNA_pol_delta_4 Family 70 119 131 79.1 3.7e-22 1 No_clan
Cotton_A_23899_CDS 195 351 194 353 PF01764.25 Lipase_3 Family 2 140 142 131.1 2.5e-38 1 CL0028
Cotton_A_14591_CDS 27 489 26 489 PF00083.24 Sugar_tr Family 2 452 452 425.2 3e-127 1 CL0015
Cotton_A_25468_CDS 340 441 330 449 PF01553.21 Acyltransferase Family 8 123 135 36.6 3e-09 1 CL0228
Cotton_A_14210_CDS 166 404 163 405 PF00931.22 NB-ARC Domain 4 251 252 163.4 5.3e-48 1 CL0023
Cotton_A_01032_CDS 103 188 102 190 PF13837.6 Myb_DNA-bind_4 Domain 2 88 90 65.8 3.4e-18 1 CL0123
Cotton_A_10830_CDS 55 149 55 152 PF04800.12 ETC_C1_NDUFA4 Family 1 93 96 114.5 1.9e-33 1 No_clan
Cotton_A_01501_CDS 177 263 177 264 PF03088.16 Str_synth Family 1 88 89 104.6 2.2e-30 1 CL0186
Cotton_A_17499_CDS 35 346 35 348 PF00657.22 Lipase_GDSL Family 1 198 200 67.2 1.8e-18 1 CL0264
Cotton_A_08360_CDS 91 318 90 335 PF08423.11 Rad51 Domain 2 231 255 346.6 6.8e-104 1 CL0023
Cotton_A_00740_CDS 38 69 35 70 PF08263.12 LRRNT_2 Family 6 40 41 20.7 0.00038 1 No_clan
Cotton_A_00740_CDS 129 188 129 188 PF13855.6 LRR_8 Repeat 2 61 61 37.5 1.5e-09 1 CL0022
Cotton_A_00740_CDS 200 260 200 260 PF13855.6 LRR_8 Repeat 1 61 61 36.0 4.5e-09 1 CL0022
Cotton_A_00740_CDS 497 714 492 773 PF07714.17 Pkinase_Tyr Domain 6 220 259 72.7 2.9e-20 1 CL0016
Cotton_A_11500_CDS 50 273 50 274 PF00856.28 SET Family 1 168 169 75.1 8.4e-21 1 No_clan
Cotton_A_11500_CDS 358 414 332 415 PF09273.11 Rubis-subs-bind Domain 69 126 129 24.0 4.9e-05 1 No_clan
Cotton_A_23290_CDS 108 151 107 151 PF13639.6 zf-RING_2 Domain 2 44 44 50.3 2.2e-13 1 CL0229
Cotton_A_28403_CDS 10 57 10 57 PF00319.18 SRF-TF Domain 1 48 48 92.3 8.9e-27 1 No_clan
Cotton_A_01401_CDS 242 270 242 272 PF02985.22 HEAT Repeat 1 29 31 21.3 0.0002 1 CL0020
Cotton_A_01401_CDS 361 459 360 461 PF13646.6 HEAT_2 Family 2 86 88 41.7 1.1e-10 1 CL0020
Cotton_A_01401_CDS 570 694 535 698 PF08172.12 CASP_C Family 62 197 252 88.2 5.2e-25 1 No_clan
Cotton_A_09138_CDS 2 98 2 98 PF04618.12 HD-ZIP_N Domain 1 110 110 94.4 5.9e-27 1 No_clan
Cotton_A_09138_CDS 126 180 125 181 PF00046.29 Homeodomain Domain 2 56 57 60.9 7.4e-17 1 CL0123
Cotton_A_09138_CDS 182 216 182 217 PF02183.18 HALZ Coiled-coil 1 42 43 42.6 5.1e-11 1 No_clan
Cotton_A_06551_CDS 5 432 3 445 PF00067.22 p450 Domain 22 452 463 309.4 3.9e-92 1 No_clan
Cotton_A_07888_CDS 52 157 52 158 PF14226.6 DIOX_N Family 1 117 118 95.3 4e-27 1 CL0029
Cotton_A_07888_CDS 204 300 202 302 PF03171.20 2OG-FeII_Oxy Domain 3 99 101 88.4 3.5e-25 1 CL0029
Cotton_A_00592_CDS 154 275 152 275 PF01553.21 Acyltransferase Family 3 135 135 67.2 1e-18 1 CL0228
Cotton_A_13386_CDS 129 158 128 158 PF01535.20 PPR Family 2 31 31 12.4 0.15 1 CL0020
Cotton_A_13386_CDS 199 228 198 228 PF01535.20 PPR Family 2 31 31 13.3 0.077 1 CL0020
Cotton_A_13386_CDS 272 312 272 320 PF13041.6 PPR_2 Repeat 1 41 50 33.7 3.1e-08 1 CL0020
Cotton_A_13386_CDS 350 373 347 375 PF01535.20 PPR Family 6 29 31 11.7 0.25 1 CL0020
Cotton_A_11199_CDS 69 330 69 331 PF00685.27 Sulfotransfer_1 Domain 1 266 267 222.0 9.6e-66 1 CL0023
Cotton_A_13088_CDS 91 146 91 146 PF16450.5 Prot_ATP_ID_OB Domain 1 57 57 33.5 2.9e-08 1 CL0021
Cotton_A_13088_CDS 204 335 204 336 PF00004.29 AAA Domain 1 130 132 148.4 1.5e-43 1 CL0023
Cotton_A_35305_CDS 84 393 75 395 PF10250.9 O-FucT Family 9 334 336 95.8 4e-27 1 CL0113
Cotton_A_02332_CDS 7 100 6 100 PF14368.6 LTP_2 Family 2 97 97 59.9 1.9e-16 1 CL0482
Cotton_A_14068_CDS 73 345 70 345 PF07714.17 Pkinase_Tyr Domain 5 259 259 158.2 2.3e-46 1 CL0016
Cotton_A_33449_CDS 105 260 105 260 PF00005.27 ABC_tran Domain 1 137 137 105.9 2.3e-30 1 CL0023
Cotton_A_38569_CDS 8 178 8 179 PF00071.22 Ras Domain 1 161 162 180.0 2.5e-53 1 CL0023
Cotton_A_07439_CDS 102 258 100 259 PF01699.24 Na_Ca_ex Family 3 150 151 76.6 2e-21 1 No_clan
Cotton_A_07439_CDS 297 437 296 441 PF01699.24 Na_Ca_ex Family 2 147 151 83.1 1.8e-23 1 No_clan
Cotton_A_29334_CDS 231 329 226 340 PF01426.18 BAH Domain 6 109 122 37.4 1.9e-09 1 No_clan
Cotton_A_29334_CDS 567 679 552 692 PF00145.17 DNA_methylase Domain 58 166 335 57.9 1.1e-15 1 CL0063
Cotton_A_03144_CDS 72 230 71 230 PF01233.19 NMT Domain 2 160 160 257.5 4.1e-77 1 CL0257
Cotton_A_03144_CDS 244 422 244 430 PF02799.15 NMT_C Domain 1 189 209 264.7 5.1e-79 1 CL0257
Cotton_A_10682_CDS 213 271 212 282 PF00270.29 DEAD Domain 2 68 176 28.0 1.7e-06 1 CL0023
Cotton_A_10682_CDS 393 501 391 502 PF00271.31 Helicase_C Family 3 110 111 58.2 8.9e-16 1 CL0023
Cotton_A_10682_CDS 514 583 513 583 PF16124.5 RecQ_Zn_bind Domain 2 66 66 49.3 6.2e-13 1 No_clan
Cotton_A_17734_CDS 114 541 114 541 PF00310.21 GATase_2 Domain 1 420 420 614.0 1.1e-184 1 CL0052
Cotton_A_17734_CDS 591 879 589 879 PF04898.14 Glu_syn_central Domain 3 279 279 383.8 5.1e-115 1 CL0036
Cotton_A_17734_CDS 946 1013 944 1014 PF01645.17 Glu_synthase Domain 3 71 368 23.2 3.4e-05 1 CL0036
Cotton_A_17935_CDS 21 88 21 96 PF01453.24 B_lectin Domain 1 69 105 63.7 1.9e-17 1 No_clan
Cotton_A_09725_CDS 449 578 449 579 PF00004.29 AAA Domain 1 131 132 139.7 7e-41 1 CL0023
Cotton_A_09725_CDS 604 637 602 643 PF17862.1 AAA_lid_3 Domain 3 36 45 37.9 1.1e-09 1 CL0671
Cotton_A_09725_CDS 790 921 790 922 PF00004.29 AAA Domain 1 131 132 147.0 4e-43 1 CL0023
Cotton_A_09725_CDS 944 988 944 990 PF17862.1 AAA_lid_3 Domain 1 43 45 48.4 6e-13 1 CL0671
Cotton_A_16535_CDS 5 159 4 159 PF00582.26 Usp Domain 3 141 141 95.8 3.2e-27 1 CL0039
Cotton_A_31181_CDS 33 159 31 159 PF02812.18 ELFV_dehydrog_N Domain 3 130 130 170.7 1.3e-50 1 CL0603
Cotton_A_31181_CDS 176 408 176 408 PF00208.21 ELFV_dehydrog Domain 1 243 243 250.8 1.5e-74 1 CL0063
Cotton_A_07103_CDS 41 194 40 195 PF04043.15 PMEI Domain 2 153 154 106.6 1.5e-30 1 No_clan
Cotton_A_30546_CDS 5 202 5 248 PF01650.18 Peptidase_C13 Family 1 191 256 145.2 2.4e-42 1 CL0093
Cotton_A_05287_CDS 97 267 92 269 PF02779.24 Transket_pyr Domain 7 176 178 155.8 8.8e-46 1 CL0254
Cotton_A_05287_CDS 283 404 282 404 PF02780.20 Transketolase_C Domain 2 124 124 123.3 5e-36 1 CL0591
Cotton_A_28698_CDS 111 283 83 289 PF00067.22 p450 Domain 81 259 463 48.6 5.1e-13 1 No_clan
Cotton_A_28698_CDS 290 334 287 342 PF00067.22 p450 Domain 295 341 463 28.6 5.8e-07 1 No_clan
Cotton_A_12843_CDS 39 89 38 90 PF00847.20 AP2 Domain 2 53 54 49.9 2.7e-13 1 CL0081
Cotton_A_03454_CDS 109 178 107 179 PF02179.16 BAG Family 3 70 75 53.5 2.4e-14 1 No_clan
Cotton_A_10749_CDS 35 149 34 149 PF08240.12 ADH_N Domain 2 109 109 90.5 6e-26 1 CL0296
Cotton_A_10749_CDS 191 312 191 315 PF00107.26 ADH_zinc_N Family 1 127 130 66.4 2.4e-18 1 CL0063
Cotton_A_09613_CDS 56 172 55 172 PF09745.9 DUF2040 Coiled-coil 2 121 121 134.0 2.7e-39 1 No_clan
Cotton_A_22256_CDS 158 178 156 179 PF05553.11 DUF761 Family 3 23 36 26.6 3.2e-06 1 No_clan
Cotton_A_01743_CDS 49 183 48 183 PF02469.22 Fasciclin Domain 2 128 128 81.6 5.5e-23 1 No_clan
Cotton_A_29623_CDS 51 122 47 122 PF03330.18 DPBB_1 Domain 5 83 83 57.1 1.7e-15 1 CL0199
Cotton_A_26469_CDS 5 32 4 32 PF12854.7 PPR_1 Repeat 2 29 34 27.2 2.3e-06 1 CL0020
Cotton_A_26469_CDS 55 100 55 104 PF13041.6 PPR_2 Repeat 1 46 50 33.2 4.5e-08 1 CL0020
Cotton_A_35801_CDS 113 448 110 449 PF01208.17 URO-D Domain 5 345 346 369.7 1.4e-110 1 CL0160
Cotton_A_16560_CDS 507 612 496 615 PF08144.11 CPL Domain 35 131 143 43.9 2.8e-11 1 CL0020
Cotton_A_14802_CDS 190 453 185 454 PF00664.23 ABC_membrane Family 6 273 274 81.0 1.1e-22 1 CL0241
Cotton_A_14802_CDS 518 652 518 653 PF00005.27 ABC_tran Domain 1 136 137 68.2 1e-18 1 CL0023
Cotton_A_14802_CDS 827 1044 800 1049 PF00664.23 ABC_membrane Family 28 247 274 97.5 9.9e-28 1 CL0241
Cotton_A_14802_CDS 1134 1256 1132 1256 PF00005.27 ABC_tran Domain 27 137 137 67.7 1.4e-18 1 CL0023
Cotton_A_00549_CDS 1 114 1 135 PF14009.6 DUF4228 Family 1 108 179 76.6 3e-21 1 No_clan
Cotton_A_39384_CDS 82 367 80 368 PF07063.13 DUF1338 Domain 3 323 324 268.1 1e-79 1 CL0104
Cotton_A_21489_CDS 59 126 59 126 PF00550.25 PP-binding Domain 1 67 67 45.1 9.5e-12 1 CL0314
Cotton_A_34478_CDS 93 276 93 276 PF04669.13 Polysacc_synt_4 Family 1 190 190 239.9 1.5e-71 1 No_clan
Cotton_A_27465_CDS 25 198 24 199 PF03266.15 NTPase_1 Domain 2 167 168 152.8 7.9e-45 1 CL0023
Cotton_A_27465_CDS 815 973 813 973 PF14309.6 DUF4378 Family 4 165 165 94.6 8.3e-27 1 No_clan
Cotton_A_01466_CDS 57 79 57 79 PF00096.26 zf-C2H2 Domain 1 23 23 17.7 0.0034 1 CL0361
Cotton_A_00313_CDS 53 122 53 122 PF00505.19 HMG_box Domain 1 69 69 85.7 2.1e-24 1 CL0114
Cotton_A_06160_CDS 42 528 41 529 PF00067.22 p450 Domain 3 462 463 226.1 7.5e-67 1 No_clan
Cotton_A_03067_CDS 43 120 36 120 PF02298.17 Cu_bind_like Domain 7 84 84 80.0 9.9e-23 1 CL0026
Cotton_A_03067_CDS 177 262 177 262 PF02298.17 Cu_bind_like Domain 1 84 84 92.3 1.4e-26 1 CL0026
Cotton_A_13687_CDS 14 40 14 40 PF13961.6 DUF4219 Domain 1 27 27 35.5 5.4e-09 1 CL0523
Cotton_A_13687_CDS 51 136 25 139 PF14223.6 Retrotran_gag_2 Family 45 128 138 54.3 1.1e-14 1 CL0523
Cotton_A_06314_CDS 348 394 340 397 PF00571.28 CBS Domain 8 54 57 24.6 2.6e-05 1 No_clan
Cotton_A_02515_CDS 37 81 35 81 PF00643.24 zf-B_box Domain 4 42 42 26.2 6.7e-06 1 No_clan
Cotton_A_02515_CDS 217 259 217 260 PF06203.14 CCT Motif 1 43 44 60.3 1.3e-16 1 CL0281
Cotton_A_01856_CDS 2 148 1 153 PF00069.25 Pkinase Domain 48 182 264 103.7 1.1e-29 1 CL0016
Cotton_A_15651_CDS 94 394 92 397 PF00676.20 E1_dh Family 3 297 300 273.3 1.9e-81 1 CL0254
Cotton_A_29902_CDS 169 212 164 213 PF00010.26 HLH Domain 6 52 53 39.0 5.7e-10 1 No_clan
Cotton_A_17182_CDS 26 104 7 105 PF14368.6 LTP_2 Family 15 96 97 37.9 1.4e-09 1 CL0482
Cotton_A_12271_CDS 168 211 166 213 PF13920.6 zf-C3HC4_3 Domain 4 48 50 40.0 2.7e-10 1 CL0229
Cotton_A_28429_CDS 53 511 53 516 PF00067.22 p450 Domain 1 458 463 364.6 7.3e-109 1 No_clan
Cotton_A_40155_CDS 33 72 32 73 PF08263.12 LRRNT_2 Family 2 40 41 30.7 2.8e-07 1 No_clan
Cotton_A_40155_CDS 146 185 146 187 PF13855.6 LRR_8 Repeat 1 39 61 29.2 5.8e-07 1 CL0022
Cotton_A_10062_CDS 143 337 141 337 PF00361.20 Proton_antipo_M Family 97 293 293 175.1 1.7e-51 1 CL0425
Cotton_A_07353_CDS 248 366 248 367 PF03109.16 ABC1 Family 1 118 119 96.4 1.3e-27 1 CL0016
Cotton_A_29415_CDS 38 420 30 420 PF14655.6 RAB3GAP2_N Family 6 414 414 382.6 2.8e-114 1 No_clan
Cotton_A_20015_CDS 567 759 531 775 PF00201.18 UDPGT Family 245 409 499 80.3 1.3e-22 1 CL0113
Cotton_A_10680_CDS 9 159 8 159 PF00582.26 Usp Domain 3 141 141 115.0 3.7e-33 1 CL0039
Cotton_A_05705_CDS 104 147 103 147 PF13639.6 zf-RING_2 Domain 2 44 44 46.0 4.9e-12 1 CL0229
Cotton_A_19800_CDS 248 380 235 391 PF00201.18 UDPGT Family 274 388 499 50.9 1.1e-13 1 CL0113
Cotton_A_08902_CDS 151 406 132 406 PF02784.16 Orn_Arg_deC_N Domain 16 247 247 138.7 2.1e-40 1 CL0036
Cotton_A_34583_CDS 28 360 27 369 PF03016.15 Exostosin Family 2 292 300 274.6 9.5e-82 1 No_clan
Cotton_A_34719_CDS 12 207 12 209 PF03357.21 Snf7 Family 1 171 173 185.4 6.3e-55 1 CL0235
Cotton_A_08880_CDS 6 115 6 117 PF13519.6 VWA_2 Domain 1 105 107 94.5 5.6e-27 1 CL0128
Cotton_A_26107_CDS 13 57 11 57 PF03107.16 C1_2 Domain 3 47 47 33.9 2.8e-08 1 CL0006
Cotton_A_21989_CDS 65 258 65 259 PF00009.27 GTP_EFTU Domain 1 193 194 194.1 1.7e-57 1 CL0023
Cotton_A_21989_CDS 282 352 282 353 PF03144.25 GTP_EFTU_D2 Domain 1 73 74 64.3 9.9e-18 1 CL0575
Cotton_A_21989_CDS 358 451 357 452 PF03143.17 GTP_EFTU_D3 Domain 2 111 112 100.6 6.2e-29 1 No_clan
Cotton_A_08968_CDS 165 173 165 176 PF02178.19 AT_hook Motif 1 9 13 10.3 0.55 1 No_clan
Cotton_A_08968_CDS 199 209 199 211 PF02178.19 AT_hook Motif 1 11 13 12.9 0.075 1 No_clan
Cotton_A_08968_CDS 272 357 269 359 PF10497.9 zf-4CXXC_R1 Domain 5 97 99 31.5 1.6e-07 1 No_clan
Cotton_A_08968_CDS 903 1005 894 1005 PF02373.22 JmjC Domain 16 114 114 51.9 8.6e-14 1 CL0029
Cotton_A_22219_CDS 14 62 13 64 PF04588.13 HIG_1_N Family 2 50 52 31.0 2.2e-07 1 No_clan
Cotton_A_07763_CDS 19 81 10 99 PF05687.13 BES1_N Family 10 72 152 110.8 7.7e-32 1 No_clan
Cotton_A_00702_CDS 121 268 112 274 PF01554.18 MatE Family 10 155 161 48.2 9e-13 1 CL0222
Cotton_A_39954_CDS 70 91 54 91 PF02045.15 CBFB_NFYA Family 35 56 56 37.7 2.4e-09 1 No_clan
Cotton_A_39238_CDS 14 169 7 170 PF00160.21 Pro_isomerase Domain 8 157 158 164.5 2.3e-48 1 CL0475
Cotton_A_28561_CDS 29 358 5 358 PF07690.16 MFS_1 Family 35 353 353 89.2 2.5e-25 1 CL0015
Cotton_A_31183_CDS 171 403 171 443 PF00069.25 Pkinase Domain 1 212 264 58.3 7.4e-16 1 CL0016
Cotton_A_25640_CDS 78 142 78 145 PF01554.18 MatE Family 1 64 161 50.3 2.1e-13 1 CL0222
Cotton_A_25640_CDS 159 308 157 310 PF01554.18 MatE Family 13 159 161 97.8 5e-28 1 CL0222
Cotton_A_25993_CDS 115 183 113 183 PF00690.26 Cation_ATPase_N Domain 3 69 69 49.1 3.3e-13 1 No_clan
Cotton_A_25993_CDS 235 437 232 439 PF00122.20 E1-E2_ATPase Family 5 179 181 142.9 7.7e-42 1 No_clan
Cotton_A_25993_CDS 457 783 455 783 PF00702.26 Hydrolase Domain 3 210 210 59.1 7e-16 1 CL0137
Cotton_A_25993_CDS 854 1024 853 1024 PF00689.21 Cation_ATPase_C Family 2 182 182 157.3 3.2e-46 1 No_clan
Cotton_A_12026_CDS 36 181 35 188 PF00106.25 adh_short Domain 2 142 195 88.4 4e-25 1 CL0063
Cotton_A_09134_CDS 25 232 25 233 PF01987.17 AIM24 Family 1 200 201 148.1 2.8e-43 1 CL0029
Cotton_A_09134_CDS 324 512 324 513 PF00827.17 Ribosomal_L15e Family 1 190 191 311.0 2.7e-93 1 CL0652
Cotton_A_16087_CDS 120 351 119 351 PF00141.23 peroxidase Domain 2 229 229 154.8 2.7e-45 1 CL0617
Cotton_A_25229_CDS 155 225 142 248 PF00201.18 UDPGT Family 327 398 499 66.6 1.8e-18 1 CL0113
Cotton_A_03520_CDS 3 51 1 76 PF01429.19 MBD Domain 22 72 77 27.6 1.8e-06 1 CL0081
Cotton_A_04284_CDS 50 297 50 297 PF04873.13 EIN3 Family 1 252 252 431.9 6.4e-130 1 No_clan
Cotton_A_38209_CDS 145 266 144 267 PF00311.17 PEPcase Family 2 123 795 121.3 3.6e-35 1 CL0151
Cotton_A_13788_CDS 173 284 147 289 PF17177.4 PPR_long Domain 78 189 212 31.5 1e-07 1 CL0020
Cotton_A_13788_CDS 288 337 288 337 PF13041.6 PPR_2 Repeat 1 50 50 49.1 4.7e-13 1 CL0020
Cotton_A_13788_CDS 361 390 361 391 PF01535.20 PPR Family 1 30 31 16.8 0.0057 1 CL0020
Cotton_A_13788_CDS 397 421 396 426 PF01535.20 PPR Family 2 26 31 13.3 0.075 1 CL0020
Cotton_A_13788_CDS 499 539 497 543 PF13041.6 PPR_2 Repeat 3 43 50 43.5 2.6e-11 1 CL0020
Cotton_A_13788_CDS 641 666 640 670 PF01535.20 PPR Family 2 27 31 9.5 1.2 1 CL0020
Cotton_A_12774_CDS 26 129 25 129 PF13947.6 GUB_WAK_bind Domain 2 106 106 94.6 5.6e-27 1 No_clan
Cotton_A_12774_CDS 284 319 284 327 PF07645.15 EGF_CA Domain 1 35 42 37.6 1.9e-09 1 CL0001
Cotton_A_12774_CDS 411 678 411 681 PF00069.25 Pkinase Domain 1 259 264 165.9 1.1e-48 1 CL0016
Cotton_A_23779_CDS 22 113 3 119 PF00931.22 NB-ARC Domain 127 218 252 44.0 1.5e-11 1 CL0023
Cotton_A_21613_CDS 11 52 10 58 PF00319.18 SRF-TF Domain 2 43 48 49.0 3e-13 1 No_clan
Cotton_A_18053_CDS 93 141 92 142 PF00847.20 AP2 Domain 3 53 54 52.2 5.3e-14 1 CL0081
Cotton_A_20322_CDS 25 107 18 123 PF00271.31 Helicase_C Family 8 94 111 59.1 4.7e-16 1 CL0023
Cotton_A_26356_CDS 25 127 24 128 PF00085.20 Thioredoxin Domain 2 102 103 111.5 1.7e-32 1 CL0172
Cotton_A_26356_CDS 143 246 142 247 PF00085.20 Thioredoxin Domain 2 102 103 115.5 9.6e-34 1 CL0172
Cotton_A_26356_CDS 264 326 264 336 PF07749.12 ERp29 Domain 1 64 96 40.4 4.2e-10 1 No_clan
Cotton_A_29265_CDS 84 128 84 128 PF02671.21 PAH Repeat 1 45 45 53.1 2.6e-14 1 No_clan
Cotton_A_29265_CDS 168 212 168 212 PF02671.21 PAH Repeat 1 45 45 71.7 3.9e-20 1 No_clan
Cotton_A_29265_CDS 364 407 363 407 PF02671.21 PAH Repeat 2 45 45 42.5 5.2e-11 1 No_clan
Cotton_A_29265_CDS 467 558 466 560 PF08295.12 Sin3_corepress Domain 2 95 98 117.3 2.4e-34 1 No_clan
Cotton_A_29265_CDS 1091 1339 1091 1339 PF16879.5 Sin3a_C Family 1 286 286 176.7 8.1e-52 1 No_clan
Cotton_A_25590_CDS 58 86 42 86 PF00400.32 WD40 Repeat 12 37 38 17.1 0.0073 1 CL0186
Cotton_A_25590_CDS 255 293 254 293 PF00400.32 WD40 Repeat 2 38 38 24.8 2.8e-05 1 CL0186
Cotton_A_17599_CDS 22 74 21 75 PF04770.12 ZF-HD_dimer Family 2 54 55 99.9 7.3e-29 1 No_clan
Cotton_A_19962_CDS 5 56 5 57 PF15879.5 MWFE Family 1 53 55 38.8 7.5e-10 1 No_clan
Cotton_A_32252_CDS 4 532 3 534 PF06101.11 Vps62 Family 2 540 542 779.8 1.1e-234 1 No_clan
Cotton_A_05661_CDS 140 186 140 187 PF07797.14 DUF1639 Family 1 40 50 29.0 7.4e-07 1 No_clan
Cotton_A_24284_CDS 88 153 88 154 PF00462.24 Glutaredoxin Domain 1 59 60 44.0 1.9e-11 1 CL0172
Cotton_A_21661_CDS 105 161 104 164 PF07714.17 Pkinase_Tyr Domain 2 64 259 25.7 6.2e-06 1 CL0016
Cotton_A_29748_CDS 38 351 38 355 PF00067.22 p450 Domain 1 316 463 120.6 7.3e-35 1 No_clan
Cotton_A_01014_CDS 48 472 48 472 PF03514.14 GRAS Family 1 374 374 453.4 5.4e-136 1 CL0063
Cotton_A_37288_CDS 68 219 67 219 PF00005.27 ABC_tran Domain 2 137 137 89.0 3.8e-25 1 CL0023
Cotton_A_37288_CDS 368 579 367 579 PF01061.24 ABC2_membrane Family 2 210 210 118.4 2.8e-34 1 CL0181
Cotton_A_15398_CDS 70 223 68 225 PF01694.22 Rhomboid Family 3 147 150 80.4 1.3e-22 1 CL0207
Cotton_A_24313_CDS 10 154 10 156 PF00179.26 UQ_con Domain 1 138 140 133.4 4.3e-39 1 CL0208
Cotton_A_23620_CDS 74 100 73 100 PF05678.14 VQ Motif 2 28 28 38.9 4.2e-10 1 No_clan
Cotton_A_04875_CDS 85 294 84 296 PF02536.14 mTERF Family 2 183 314 96.9 1e-27 1 No_clan
Cotton_A_04875_CDS 253 357 251 358 PF02536.14 mTERF Family 212 313 314 54.7 7.3e-15 1 No_clan
Cotton_A_07814_CDS 55 313 55 313 PF00069.25 Pkinase Domain 1 264 264 266.2 2.9e-79 1 CL0016
Cotton_A_07814_CDS 360 419 358 421 PF13499.6 EF-hand_7 Domain 3 68 71 34.3 2.4e-08 1 CL0220
Cotton_A_07814_CDS 431 494 430 494 PF13499.6 EF-hand_7 Domain 2 71 71 48.9 6.5e-13 1 CL0220
Cotton_A_36803_CDS 10 159 9 159 PF13302.7 Acetyltransf_3 Domain 2 138 138 78.2 9.2e-22 1 CL0257
Cotton_A_02818_CDS 142 457 142 458 PF10250.9 O-FucT Family 1 335 336 246.4 6.1e-73 1 CL0113
Cotton_A_31097_CDS 41 102 41 109 PF00076.22 RRM_1 Domain 1 63 70 50.7 1.2e-13 1 CL0221
Cotton_A_31097_CDS 129 197 129 199 PF00076.22 RRM_1 Domain 1 68 70 60.3 1.2e-16 1 CL0221
Cotton_A_11066_CDS 21 87 19 89 PF00111.27 Fer2 Domain 3 76 78 30.1 3.4e-07 1 CL0486
Cotton_A_11066_CDS 98 183 98 184 PF01799.20 Fer2_2 Domain 1 75 76 80.4 7.3e-23 1 CL0486
Cotton_A_11066_CDS 246 426 238 426 PF00941.21 FAD_binding_5 Family 4 171 171 119.3 1.4e-34 1 CL0077
Cotton_A_11066_CDS 444 549 443 551 PF03450.17 CO_deh_flav_C Domain 2 101 103 70.7 9.3e-20 1 CL0233
Cotton_A_11066_CDS 623 730 623 731 PF01315.22 Ald_Xan_dh_C Domain 1 109 110 97.5 5.6e-28 1 No_clan
Cotton_A_11066_CDS 759 1158 748 1169 PF02738.18 Ald_Xan_dh_C2 Family 15 409 550 390.2 1.4e-116 1 No_clan
Cotton_A_11066_CDS 1170 1247 1158 1247 PF02738.18 Ald_Xan_dh_C2 Family 473 550 550 93.9 8.3e-27 1 No_clan
Cotton_A_00746_CDS 57 93 55 93 PF00400.32 WD40 Repeat 3 38 38 25.8 1.3e-05 1 CL0186
Cotton_A_00746_CDS 150 185 147 185 PF00400.32 WD40 Repeat 5 38 38 22.7 0.00013 1 CL0186
Cotton_A_00746_CDS 201 233 194 233 PF00400.32 WD40 Repeat 8 38 38 15.9 0.018 1 CL0186
Cotton_A_00746_CDS 241 276 238 276 PF00400.32 WD40 Repeat 4 38 38 30.6 4e-07 1 CL0186
Cotton_A_00746_CDS 331 360 324 360 PF00400.32 WD40 Repeat 9 37 38 15.7 0.021 1 CL0186
Cotton_A_18563_CDS 19 66 19 66 PF03107.16 C1_2 Domain 1 47 47 31.9 1.2e-07 1 CL0006
Cotton_A_18563_CDS 77 125 77 125 PF03107.16 C1_2 Domain 1 47 47 46.9 2.6e-12 1 CL0006
Cotton_A_18563_CDS 178 277 177 280 PF17871.1 AAA_lid_9 Domain 2 101 104 59.4 2.7e-16 1 CL0671
Cotton_A_18563_CDS 387 551 386 551 PF07724.14 AAA_2 Domain 2 171 171 156.6 6.3e-46 1 CL0023
Cotton_A_18563_CDS 557 636 557 637 PF10431.9 ClpB_D2-small Domain 1 80 81 69.7 1.6e-19 1 CL0671
Cotton_A_24104_CDS 46 423 46 423 PF03140.15 DUF247 Family 1 397 397 335.0 6.9e-100 1 No_clan
Cotton_A_36106_CDS 2 109 1 112 PF00069.25 Pkinase Domain 158 258 264 32.7 4.7e-08 1 CL0016
Cotton_A_24415_CDS 11 476 9 476 PF05694.11 SBP56 Family 3 454 454 728.2 3.5e-219 1 CL0186
Cotton_A_21389_CDS 33 81 33 81 PF00450.22 Peptidase_S10 Domain 1 49 419 48.6 8.1e-13 1 CL0028
Cotton_A_33450_CDS 44 80 43 81 PF08263.12 LRRNT_2 Family 2 40 41 21.9 0.00016 1 No_clan
Cotton_A_33450_CDS 111 168 109 168 PF13855.6 LRR_8 Repeat 3 60 61 42.0 5.9e-11 1 CL0022
Cotton_A_33450_CDS 183 240 183 240 PF13855.6 LRR_8 Repeat 1 61 61 28.9 7.3e-07 1 CL0022
Cotton_A_33450_CDS 424 464 423 468 PF12799.7 LRR_4 Repeat 2 40 44 29.2 8.3e-07 1 CL0022
Cotton_A_33450_CDS 610 630 610 633 PF00560.33 LRR_1 Repeat 1 21 23 11.6 0.35 1 CL0022
Cotton_A_08338_CDS 9 89 9 93 PF14226.6 DIOX_N Family 1 78 118 53.4 3.8e-14 1 CL0029
Cotton_A_01846_CDS 97 533 97 533 PF12899.7 Glyco_hydro_100 Domain 1 435 435 704.1 5.7e-212 1 CL0059
Cotton_A_15210_CDS 57 106 57 106 PF16851.5 Stomagen Domain 1 50 50 113.1 4.3e-33 1 No_clan
Cotton_A_06738_CDS 473 868 470 869 PF02181.23 FH2 Family 5 371 372 389.4 1.8e-116 1 No_clan
Cotton_A_06694_CDS 13 110 13 111 PF03195.14 LOB Family 1 98 99 149.4 3.6e-44 1 No_clan
Cotton_A_03713_CDS 11 70 11 70 PF06972.11 DUF1296 Family 1 60 60 116.5 4.1e-34 1 CL0214
Cotton_A_12977_CDS 135 191 134 199 PF11793.8 FANCL_C Domain 2 62 70 22.5 9.4e-05 1 CL0229
Cotton_A_00863_CDS 32 242 32 243 PF01988.19 VIT1 Family 1 214 215 239.7 2.9e-71 1 No_clan
Cotton_A_16675_CDS 332 527 331 549 PF13632.6 Glyco_trans_2_3 Domain 2 193 197 75.9 3.8e-21 1 CL0110
Cotton_A_30025_CDS 225 540 225 541 PF10250.9 O-FucT Family 1 335 336 252.7 7.8e-75 1 CL0113
Cotton_A_07840_CDS 35 339 34 340 PF01301.19 Glyco_hydro_35 Domain 2 315 316 406.6 9.3e-122 1 CL0058
Cotton_A_07840_CDS 347 418 347 418 PF17834.1 GHD Domain 1 72 72 94.9 2.1e-27 1 CL0369
Cotton_A_30520_CDS 39 88 38 91 PF13637.6 Ank_4 Repeat 3 52 55 32.2 1.1e-07 1 CL0465
Cotton_A_30520_CDS 105 185 103 194 PF12796.7 Ank_2 Repeat 5 72 83 32.5 9.4e-08 1 CL0465
Cotton_A_30520_CDS 225 323 221 329 PF13962.6 PGG Domain 6 101 116 32.6 5.5e-08 1 No_clan
Cotton_A_38724_CDS 159 197 159 197 PF03470.14 zf-XS Domain 1 43 43 39.7 4.4e-10 1 No_clan
Cotton_A_38724_CDS 230 295 230 298 PF03468.14 XS Domain 1 66 113 68.8 4.7e-19 1 CL0221
Cotton_A_07012_CDS 166 207 165 208 PF06203.14 CCT Motif 2 43 44 63.8 1.1e-17 1 CL0281
Cotton_A_16593_CDS 7 41 7 42 PF00320.27 GATA Domain 1 35 36 51.3 6.1e-14 1 CL0167
Cotton_A_16593_CDS 281 364 273 403 PF13919.6 ASXH Domain 9 106 139 39.7 4.4e-10 1 No_clan
Cotton_A_23922_CDS 57 394 57 394 PF11955.8 PORR Family 1 326 326 324.9 4.5e-97 1 No_clan
Cotton_A_13680_CDS 327 375 320 377 PF00571.28 CBS Domain 7 55 57 24.3 3.1e-05 1 No_clan
Cotton_A_23722_CDS 38 490 38 497 PF00067.22 p450 Domain 1 455 463 391.1 6.5e-117 1 No_clan
Cotton_A_23545_CDS 15 223 14 224 PF00225.23 Kinesin Domain 2 204 333 156.2 9.5e-46 1 CL0023
Cotton_A_23545_CDS 275 388 264 388 PF00225.23 Kinesin Domain 222 333 333 152.7 1.1e-44 1 CL0023
Cotton_A_30691_CDS 97 340 97 355 PF03552.14 Cellulose_synt Family 1 259 722 237.3 3.8e-70 1 CL0110
Cotton_A_36334_CDS 248 508 248 520 PF10225.9 NEMP Family 1 238 249 174.2 3.6e-51 1 No_clan
Cotton_A_29936_CDS 42 76 42 76 PF10559.9 Plug_translocon Domain 1 35 35 68.1 4.1e-19 1 No_clan
Cotton_A_14198_CDS 130 186 127 186 PF13691.6 Lactamase_B_4 Domain 4 63 63 61.3 5e-17 1 CL0381
Cotton_A_13611_CDS 155 296 155 299 PF00620.27 RhoGAP Domain 1 149 152 107.8 4.3e-31 1 CL0409
Cotton_A_19574_CDS 35 138 34 138 PF13947.6 GUB_WAK_bind Domain 2 106 106 95.9 2.2e-27 1 No_clan
Cotton_A_19574_CDS 167 277 166 279 PF08488.11 WAK Family 2 101 103 27.6 3.1e-06 1 No_clan
Cotton_A_34506_CDS 50 172 47 172 PF04852.12 DUF640 Family 4 126 126 222.6 1.2e-66 1 No_clan
Cotton_A_11473_CDS 34 301 34 301 PF07651.16 ANTH Domain 1 277 277 291.5 4.9e-87 1 CL0009
Cotton_A_33995_CDS 65 480 57 487 PF12222.8 PNGaseA Family 11 427 434 351.3 7.2e-105 1 No_clan
Cotton_A_21324_CDS 221 334 220 334 PF02883.20 Alpha_adaptinC2 Domain 2 111 111 104.9 2.8e-30 1 CL0159
Cotton_A_09544_CDS 82 267 82 268 PF14543.6 TAXi_N Domain 1 177 178 139.0 1.9e-40 1 CL0129
Cotton_A_09544_CDS 285 437 285 438 PF14541.6 TAXi_C Domain 1 160 161 90.9 7.4e-26 1 CL0129
Cotton_A_05819_CDS 43 276 41 278 PF00141.23 peroxidase Domain 3 221 229 238.5 7.3e-71 1 CL0617
Cotton_A_28997_CDS 165 223 165 223 PF03106.15 WRKY Domain 1 59 59 85.5 2.2e-24 1 CL0274
Cotton_A_01741_CDS 73 186 72 187 PF03479.15 DUF296 Domain 2 106 107 70.1 1.8e-19 1 CL0615
Cotton_A_15136_CDS 42 85 22 86 PF05347.15 Complex1_LYR Family 21 58 59 22.0 0.00012 1 CL0491
Cotton_A_00624_CDS 197 224 196 224 PF01535.20 PPR Family 4 31 31 20.9 0.00028 1 CL0020
Cotton_A_00624_CDS 235 259 233 259 PF01535.20 PPR Family 7 31 31 11.1 0.4 1 CL0020
Cotton_A_01259_CDS 61 481 61 483 PF05577.12 Peptidase_S28 Domain 1 432 434 305.8 4.6e-91 1 CL0028
Cotton_A_19182_CDS 110 173 109 180 PF01842.25 ACT Domain 2 59 67 30.8 1.9e-07 1 CL0070
Cotton_A_19182_CDS 344 395 343 412 PF01842.25 ACT Domain 2 53 67 33.4 2.8e-08 1 CL0070
Cotton_A_12328_CDS 63 205 57 209 PF07714.17 Pkinase_Tyr Domain 7 151 259 83.5 1.4e-23 1 CL0016
Cotton_A_25181_CDS 8 93 5 100 PF12796.7 Ank_2 Repeat 4 75 83 30.4 4.5e-07 1 CL0465
Cotton_A_25181_CDS 109 197 109 201 PF12796.7 Ank_2 Repeat 1 70 83 37.1 3.5e-09 1 CL0465
Cotton_A_39838_CDS 15 175 15 176 PF00071.22 Ras Domain 1 161 162 199.4 2.7e-59 1 CL0023
Cotton_A_04693_CDS 285 326 285 326 PF01753.18 zf-MYND Domain 1 38 38 27.1 3.2e-06 1 CL0175
Cotton_A_24023_CDS 16 54 16 60 PF02892.15 zf-BED Domain 1 39 44 24.7 1.7e-05 1 CL0361
Cotton_A_24023_CDS 221 371 221 372 PF04937.15 DUF659 Family 1 151 152 182.7 3.7e-54 1 No_clan
Cotton_A_24023_CDS 592 659 572 659 PF05699.14 Dimer_Tnp_hAT Domain 18 86 86 29.3 5.3e-07 1 No_clan
Cotton_A_04432_CDS 12 100 11 101 PF03101.15 FAR1 Domain 2 89 90 98.9 2e-28 1 CL0274
Cotton_A_34581_CDS 80 200 80 202 PF01678.19 DAP_epimerase Domain 1 119 121 123.4 5.3e-36 1 CL0288
Cotton_A_34581_CDS 234 354 233 355 PF01678.19 DAP_epimerase Domain 2 120 121 101.8 2.6e-29 1 CL0288
Cotton_A_31849_CDS 1 76 1 78 PF01249.18 Ribosomal_S21e Family 1 76 79 130.4 2e-38 1 No_clan
Cotton_A_05126_CDS 12 70 3 70 PF03946.14 Ribosomal_L11_N Domain 7 65 65 75.6 2e-21 1 No_clan
Cotton_A_05126_CDS 75 144 74 144 PF00298.19 Ribosomal_L11 Domain 2 70 70 64.8 7.4e-18 1 No_clan
Cotton_A_21764_CDS 94 454 94 455 PF03759.13 PRONE Family 1 362 363 593.1 1.6e-178 1 No_clan
Cotton_A_01556_CDS 31 245 31 245 PF00314.17 Thaumatin Domain 1 214 214 281.2 5.2e-84 1 CL0293
Cotton_A_13264_CDS 1 178 1 178 PF14009.6 DUF4228 Family 1 179 179 112.0 4e-32 1 No_clan
Cotton_A_29026_CDS 5 460 3 460 PF05056.12 DUF674 Family 3 449 449 456.7 8.3e-137 1 No_clan
Cotton_A_00462_CDS 57 187 57 187 PF03641.14 Lysine_decarbox Family 1 132 132 150.4 2.8e-44 1 CL0349
Cotton_A_05400_CDS 99 162 29 162 PF14510.6 ABC_trans_N Domain 30 81 81 42.1 1e-10 1 No_clan
Cotton_A_05400_CDS 187 369 187 371 PF00005.27 ABC_tran Domain 1 135 137 48.2 1.5e-12 1 CL0023
Cotton_A_05400_CDS 523 735 522 735 PF01061.24 ABC2_membrane Family 2 210 210 157.1 3.9e-46 1 CL0181
Cotton_A_05400_CDS 740 804 740 804 PF08370.11 PDR_assoc Family 1 65 65 95.9 8.7e-28 1 No_clan
Cotton_A_05400_CDS 918 1069 917 1069 PF00005.27 ABC_tran Domain 2 137 137 69.3 4.5e-19 1 CL0023
Cotton_A_05400_CDS 1215 1428 1214 1428 PF01061.24 ABC2_membrane Family 2 210 210 197.4 1.8e-58 1 CL0181
Cotton_A_23956_CDS 25 76 25 76 PF08100.11 Dimerisation Domain 1 51 51 80.9 4.7e-23 1 CL0123
Cotton_A_29779_CDS 99 191 98 199 PF03168.13 LEA_2 Domain 2 92 101 48.1 1.3e-12 1 CL0159
Cotton_A_32586_CDS 12 86 10 87 PF06404.12 PSK Family 3 89 90 63.7 2.4e-17 1 No_clan
Cotton_A_28025_CDS 53 356 5 360 PF10156.9 Med17 Family 86 394 462 33.3 2.1e-08 1 No_clan
Cotton_A_00595_CDS 1 57 1 59 PF04783.12 DUF630 Family 1 57 59 83.1 1.1e-23 1 No_clan
Cotton_A_00595_CDS 392 685 390 688 PF04782.12 DUF632 Family 3 307 310 356.5 1.3e-106 1 No_clan
Cotton_A_35007_CDS 26 98 22 99 PF03004.14 Transposase_24 Family 53 131 142 35.7 8.2e-09 1 No_clan
Cotton_A_23834_CDS 162 211 160 221 PF00170.21 bZIP_1 Family 5 54 64 36.9 3e-09 1 CL0018
Cotton_A_11639_CDS 3 211 3 212 PF00091.25 Tubulin Domain 1 196 197 232.3 5.5e-69 1 CL0566
Cotton_A_11639_CDS 261 382 261 383 PF03953.17 Tubulin_C Domain 1 125 126 136.7 4.5e-40 1 CL0442
Cotton_A_24587_CDS 111 232 104 233 PF00134.23 Cyclin_N Domain 8 126 127 148.1 1e-43 1 CL0065
Cotton_A_15463_CDS 29 156 20 163 PF13359.6 DDE_Tnp_4 Domain 18 141 158 79.7 1.8e-22 1 CL0219
Cotton_A_22765_CDS 33 103 31 103 PF14223.6 Retrotran_gag_2 Family 3 70 138 51.0 1.1e-13 1 CL0523
Cotton_A_22883_CDS 216 265 214 265 PF00249.31 Myb_DNA-binding Domain 3 46 46 27.4 2.8e-06 1 CL0123
Cotton_A_22883_CDS 294 340 293 340 PF14379.6 Myb_CC_LHEQLE Family 2 48 48 72.1 2.2e-20 1 No_clan
Cotton_A_22892_CDS 43 69 43 70 PF05678.14 VQ Motif 1 27 28 49.0 3e-13 1 No_clan
Cotton_A_01945_CDS 6 144 6 145 PF00179.26 UQ_con Domain 1 139 140 133.9 3e-39 1 CL0208
Cotton_A_07312_CDS 94 207 94 207 PF03479.15 DUF296 Domain 1 107 107 95.3 2.5e-27 1 CL0615
Cotton_A_15592_CDS 156 412 156 412 PF00069.25 Pkinase Domain 1 264 264 258.8 5.1e-77 1 CL0016
Cotton_A_15592_CDS 434 471 433 471 PF00433.24 Pkinase_C Family 2 46 46 19.8 0.00098 1 No_clan
Cotton_A_28667_CDS 1 324 1 325 PF03547.18 Mem_trans Family 66 386 387 191.6 1.4e-56 1 CL0064
Cotton_A_38353_CDS 305 353 304 353 PF00415.18 RCC1 Repeat 2 50 50 43.3 4.2e-11 1 CL0186
Cotton_A_38353_CDS 356 406 356 407 PF00415.18 RCC1 Repeat 1 49 50 32.7 8.3e-08 1 CL0186
Cotton_A_38353_CDS 411 459 410 459 PF00415.18 RCC1 Repeat 2 50 50 41.0 2.2e-10 1 CL0186
Cotton_A_38353_CDS 480 526 478 526 PF00415.18 RCC1 Repeat 4 50 50 46.0 6.1e-12 1 CL0186
Cotton_A_38353_CDS 529 577 529 578 PF00415.18 RCC1 Repeat 1 49 50 34.9 1.7e-08 1 CL0186
Cotton_A_38353_CDS 584 630 583 630 PF00415.18 RCC1 Repeat 4 50 50 49.0 6.7e-13 1 CL0186
Cotton_A_38353_CDS 638 700 633 701 PF01363.21 FYVE Domain 6 67 68 45.5 6.3e-12 1 CL0390
Cotton_A_38353_CDS 870 898 869 901 PF13713.6 BRX_N Domain 2 30 37 38.5 6.9e-10 1 No_clan
Cotton_A_38353_CDS 952 1006 951 1006 PF08381.11 BRX Domain 2 56 56 82.6 9e-24 1 No_clan
Cotton_A_05211_CDS 50 324 31 328 PF02668.16 TauD Domain 26 264 268 120.1 1.4e-34 1 CL0029
Cotton_A_25336_CDS 52 149 52 164 PF14226.6 DIOX_N Family 1 98 118 90.0 1.8e-25 1 CL0029
Cotton_A_25336_CDS 209 306 206 306 PF03171.20 2OG-FeII_Oxy Domain 4 101 101 98.8 2.1e-28 1 CL0029
Cotton_A_00900_CDS 6 108 5 109 PF03179.15 V-ATPase_G Family 2 104 105 114.7 2.6e-33 1 CL0255
Cotton_A_29921_CDS 115 182 109 203 PF17917.1 RT_RNaseH Domain 8 80 105 67.8 8.5e-19 1 CL0219
Cotton_A_08764_CDS 13 115 3 117 PF05158.12 RNA_pol_Rpc34 Family 82 184 336 117.7 6.8e-34 1 CL0123
Cotton_A_08764_CDS 120 229 116 229 PF05158.12 RNA_pol_Rpc34 Family 223 336 336 51.8 8e-14 1 CL0123
Cotton_A_12526_CDS 189 227 189 227 PF01753.18 zf-MYND Domain 1 38 38 29.9 4.3e-07 1 CL0175
Cotton_A_12526_CDS 264 412 250 413 PF04194.13 PDCD2_C Domain 6 174 175 136.9 7.3e-40 1 No_clan
Cotton_A_16210_CDS 39 178 38 183 PF00106.25 adh_short Domain 2 141 195 107.7 4.9e-31 1 CL0063
Cotton_A_23680_CDS 295 354 294 354 PF13855.6 LRR_8 Repeat 2 61 61 29.4 5e-07 1 CL0022
Cotton_A_23680_CDS 429 613 427 613 PF11721.8 Malectin Domain 3 165 165 125.4 2.3e-36 1 CL0202
Cotton_A_23680_CDS 698 961 695 963 PF07714.17 Pkinase_Tyr Domain 4 257 259 152.5 1.2e-44 1 CL0016
Cotton_A_06591_CDS 60 178 60 180 PF00091.25 Tubulin Domain 1 153 197 90.2 1.9e-25 1 CL0566
Cotton_A_06591_CDS 254 347 254 348 PF12327.8 FtsZ_C Domain 1 94 95 102.0 1.6e-29 1 CL0442
Cotton_A_15168_CDS 733 937 657 943 PF03399.16 SAC3_GANP Family 41 276 293 90.2 1.5e-25 1 CL0123
Cotton_A_31221_CDS 58 101 57 101 PF13639.6 zf-RING_2 Domain 2 44 44 48.5 8.1e-13 1 CL0229
Cotton_A_28722_CDS 65 226 64 230 PF00270.29 DEAD Domain 2 171 176 136.4 8.6e-40 1 CL0023
Cotton_A_28722_CDS 266 374 265 374 PF00271.31 Helicase_C Family 2 111 111 100.6 6.2e-29 1 CL0023
Cotton_A_31794_CDS 155 195 155 195 PF13639.6 zf-RING_2 Domain 1 44 44 28.8 1.2e-06 1 CL0229
Cotton_A_07576_CDS 292 346 291 346 PF04083.16 Abhydro_lipase Family 2 64 64 54.0 9.2e-15 1 CL0028
Cotton_A_10923_CDS 8 79 8 80 PF00173.28 Cyt-b5 Domain 1 73 74 86.1 1.3e-24 1 No_clan
Cotton_A_16792_CDS 76 335 76 336 PF02485.21 Branch Family 1 246 247 249.1 4.5e-74 1 CL0110
Cotton_A_34193_CDS 95 217 92 219 PF01529.20 DHHC Family 4 132 134 117.1 5.7e-34 1 No_clan
Cotton_A_04746_CDS 65 198 58 199 PF00190.22 Cupin_1 Domain 14 150 151 103.4 8.3e-30 1 CL0029
Cotton_A_07978_CDS 231 562 231 623 PF01425.21 Amidase Family 1 371 451 195.7 1.3e-57 1 No_clan
Cotton_A_01686_CDS 5 104 5 105 PF02362.21 B3 Family 1 100 101 55.0 5.8e-15 1 CL0405
Cotton_A_19903_CDS 1 279 1 279 PF00862.19 Sucrose_synth Family 270 548 548 572.5 7.3e-172 1 CL0113
Cotton_A_19903_CDS 289 463 282 465 PF00534.20 Glycos_transf_1 Family 8 166 172 95.9 1.9e-27 1 CL0113
Cotton_A_17171_CDS 48 160 45 170 PF00067.22 p450 Domain 6 118 463 64.3 8.5e-18 1 No_clan
Cotton_A_29424_CDS 19 96 18 98 PF12895.7 ANAPC3 Domain 2 80 82 64.5 7.5e-18 1 CL0020
Cotton_A_19564_CDS 21 187 21 187 PF13359.6 DDE_Tnp_4 Domain 1 158 158 83.5 1.2e-23 1 CL0219
Cotton_A_05985_CDS 556 646 555 646 PF04576.15 Zein-binding Family 2 92 92 106.9 4.8e-31 1 No_clan
Cotton_A_40278_CDS 18 110 18 125 PF14226.6 DIOX_N Family 1 98 118 62.2 7.5e-17 1 CL0029
Cotton_A_40278_CDS 175 266 168 268 PF03171.20 2OG-FeII_Oxy Domain 8 99 101 87.8 5.5e-25 1 CL0029
Cotton_A_30525_CDS 34 64 26 64 PF08263.12 LRRNT_2 Family 10 41 41 23.6 4.8e-05 1 No_clan
Cotton_A_30525_CDS 455 514 454 514 PF13855.6 LRR_8 Repeat 2 61 61 29.1 5.9e-07 1 CL0022
Cotton_A_30525_CDS 647 805 645 818 PF00069.25 Pkinase Domain 3 151 264 107.7 6.1e-31 1 CL0016
Cotton_A_28222_CDS 89 180 88 180 PF03101.15 FAR1 Domain 2 90 90 116.1 8.5e-34 1 CL0274
Cotton_A_28222_CDS 302 394 301 395 PF10551.9 MULE Domain 2 95 96 107.0 4.9e-31 1 CL0219
Cotton_A_28222_CDS 570 616 570 618 PF04434.17 SWIM Domain 1 38 40 43.7 1.5e-11 1 No_clan
Cotton_A_36302_CDS 39 91 38 93 PF00646.33 F-box Domain 2 46 48 34.0 1.9e-08 1 CL0271
Cotton_A_36302_CDS 103 388 103 388 PF01167.18 Tub Domain 1 241 241 307.5 7.1e-92 1 CL0395
Cotton_A_26705_CDS 119 396 118 396 PF03016.15 Exostosin Family 2 300 300 186.5 6.5e-55 1 No_clan
Cotton_A_21135_CDS 45 159 45 160 PF13537.6 GATase_7 Domain 1 122 123 125.7 9e-37 1 CL0052
Cotton_A_21135_CDS 204 354 203 357 PF00733.21 Asn_synthase Domain 2 143 355 195.8 1.6e-57 1 CL0039
Cotton_A_21181_CDS 16 56 16 56 PF13921.6 Myb_DNA-bind_6 Domain 1 39 60 32.6 7e-08 1 CL0123
Cotton_A_21181_CDS 57 95 57 98 PF00249.31 Myb_DNA-binding Domain 4 42 46 43.2 3.3e-11 1 CL0123
Cotton_A_22222_CDS 10 59 10 62 PF04588.13 HIG_1_N Family 1 49 52 30.5 3.1e-07 1 No_clan
Cotton_A_22052_CDS 212 582 212 582 PF03514.14 GRAS Family 1 374 374 278.2 9.5e-83 1 CL0063
Cotton_A_38413_CDS 1 108 1 109 PF00665.26 rve Domain 10 118 119 44.6 1.4e-11 1 CL0219
Cotton_A_10519_CDS 131 357 129 360 PF04499.15 SAPS Family 3 240 489 136.9 8.7e-40 1 No_clan
Cotton_A_10519_CDS 357 491 355 491 PF04499.15 SAPS Family 355 489 489 81.4 5.9e-23 1 No_clan
Cotton_A_10827_CDS 463 847 459 848 PF02181.23 FH2 Family 6 371 372 400.8 5.9e-120 1 No_clan
Cotton_A_10521_CDS 41 168 4 168 PF04520.13 Senescence_reg Family 51 168 168 124.5 7.3e-36 1 No_clan
Cotton_A_12307_CDS 55 150 33 151 PF07714.17 Pkinase_Tyr Domain 177 258 259 27.1 2.4e-06 1 CL0016
Cotton_A_01360_CDS 88 308 88 310 PF07859.13 Abhydrolase_3 Domain 1 208 211 164.1 4e-48 1 CL0028
Cotton_A_25183_CDS 29 70 27 71 PF00401.20 ATP-synt_DE Domain 4 46 47 28.2 1.7e-06 1 No_clan
Cotton_A_23062_CDS 6 169 1 170 PF03016.15 Exostosin Family 143 299 300 134.0 6.4e-39 1 No_clan
Cotton_A_21142_CDS 9 98 8 98 PF14368.6 LTP_2 Family 2 97 97 46.2 3.7e-12 1 CL0482
Cotton_A_01366_CDS 64 331 34 335 PF01120.17 Alpha_L_fucos Domain 86 341 350 112.2 3.7e-32 1 CL0058
Cotton_A_23775_CDS 362 478 357 479 PF00581.20 Rhodanese Domain 6 106 107 22.3 0.00015 1 CL0031
Cotton_A_17275_CDS 15 141 15 141 PF02365.15 NAM Family 1 126 126 138.9 1.6e-40 1 No_clan
Cotton_A_22080_CDS 5 188 4 188 PF01105.24 EMP24_GP25L Domain 2 182 182 164.5 2.3e-48 1 CL0521
Cotton_A_15197_CDS 34 95 33 102 PF08240.12 ADH_N Domain 2 61 109 43.8 1.9e-11 1 CL0296
Cotton_A_15197_CDS 196 325 196 325 PF13602.6 ADH_zinc_N_2 Domain 1 133 133 73.9 2.5e-20 1 CL0063
Cotton_A_22840_CDS 18 213 11 217 PF01150.17 GDA1_CD39 Family 47 253 423 175.6 1.3e-51 1 CL0108
Cotton_A_30527_CDS 12 51 11 51 PF08263.12 LRRNT_2 Family 2 41 41 38.0 1.5e-09 1 No_clan
Cotton_A_30527_CDS 104 120 104 125 PF00560.33 LRR_1 Repeat 1 17 23 9.6 1.6 1 CL0022
Cotton_A_30527_CDS 651 929 649 931 PF00069.25 Pkinase Domain 3 260 264 153.8 5.3e-45 1 CL0016
Cotton_A_01248_CDS 22 92 18 93 PF02297.17 COX6B Domain 8 75 76 64.5 7.6e-18 1 CL0351
Cotton_A_40870_CDS 346 606 345 606 PF00069.25 Pkinase Domain 2 264 264 219.8 4e-65 1 CL0016
Cotton_A_10667_CDS 101 129 97 129 PF00515.28 TPR_1 Repeat 5 33 34 32.9 3.7e-08 1 CL0020
Cotton_A_10667_CDS 132 160 130 163 PF13181.6 TPR_8 Repeat 3 31 34 14.4 0.034 1 CL0020
Cotton_A_10667_CDS 348 437 348 437 PF13877.6 RPAP3_C Domain 1 94 94 86.7 1.2e-24 1 No_clan
Cotton_A_36670_CDS 6 93 5 101 PF12796.7 Ank_2 Repeat 2 75 83 36.5 5.5e-09 1 CL0465
Cotton_A_36670_CDS 109 201 109 206 PF12796.7 Ank_2 Repeat 1 78 83 45.4 9.2e-12 1 CL0465
Cotton_A_36670_CDS 278 380 277 385 PF13962.6 PGG Domain 2 100 116 78.3 3.8e-22 1 No_clan
Cotton_A_03925_CDS 43 204 42 204 PF05078.12 DUF679 Family 2 163 163 239.1 2.1e-71 1 No_clan
Cotton_A_09712_CDS 35 112 32 112 PF02298.17 Cu_bind_like Domain 4 84 84 83.9 5.9e-24 1 CL0026
Cotton_A_14761_CDS 23 490 21 493 PF13520.6 AA_permease_2 Family 3 422 425 178.0 2.8e-52 1 CL0062
Cotton_A_30915_CDS 7 103 7 106 PF03195.14 LOB Family 1 96 99 123.0 5.9e-36 1 No_clan
Cotton_A_14380_CDS 39 124 37 128 PF00153.27 Mito_carr Family 4 91 97 80.5 6.5e-23 1 No_clan
Cotton_A_14380_CDS 141 203 139 207 PF00153.27 Mito_carr Family 3 66 97 48.5 6e-13 1 No_clan
Cotton_A_14380_CDS 257 360 256 363 PF00153.27 Mito_carr Family 2 93 97 86.3 9.9e-25 1 No_clan
Cotton_A_22694_CDS 165 277 162 283 PF02893.20 GRAM Domain 4 107 114 63.1 2e-17 1 CL0266
Cotton_A_17007_CDS 4 76 2 78 PF01716.18 MSP Family 104 181 241 87.9 5.6e-25 1 CL0193
Cotton_A_17007_CDS 78 103 74 103 PF01716.18 MSP Family 216 241 241 32.6 4.4e-08 1 CL0193
Cotton_A_25600_CDS 59 78 58 78 PF00612.27 IQ Motif 2 21 21 26.2 3.9e-06 1 CL0220
Cotton_A_25600_CDS 82 154 77 155 PF02179.16 BAG Family 3 74 75 42.3 7.6e-11 1 No_clan
Cotton_A_10494_CDS 39 156 38 159 PF00638.18 Ran_BP1 Family 2 119 122 138.6 1.1e-40 1 CL0266
Cotton_A_19290_CDS 44 96 42 97 PF00046.29 Homeodomain Domain 4 56 57 55.9 2.8e-15 1 CL0123
Cotton_A_19290_CDS 98 139 98 140 PF02183.18 HALZ Coiled-coil 1 42 43 57.7 9.9e-16 1 No_clan
Cotton_A_10603_CDS 133 189 133 190 PF03909.17 BSD Domain 1 57 58 28.4 1.2e-06 1 No_clan
Cotton_A_10689_CDS 66 112 66 112 PF03107.16 C1_2 Domain 1 47 47 30.1 4.4e-07 1 CL0006
Cotton_A_10689_CDS 405 457 405 457 PF03107.16 C1_2 Domain 1 47 47 28.6 1.3e-06 1 CL0006
Cotton_A_10689_CDS 514 551 511 551 PF00514.23 Arm Repeat 4 41 41 40.1 2.3e-10 1 CL0020
Cotton_A_10689_CDS 603 632 598 632 PF00514.23 Arm Repeat 13 41 41 21.1 0.00022 1 CL0020
Cotton_A_10689_CDS 635 672 634 674 PF00514.23 Arm Repeat 2 39 41 20.9 0.00026 1 CL0020
Cotton_A_10689_CDS 717 753 717 756 PF00514.23 Arm Repeat 1 37 41 40.4 1.9e-10 1 CL0020
Cotton_A_10689_CDS 760 797 759 799 PF00514.23 Arm Repeat 2 39 41 28.1 1.5e-06 1 CL0020
Cotton_A_10689_CDS 814 852 814 852 PF16186.5 Arm_3 Family 1 39 53 35.7 4.7e-09 1 CL0020
Cotton_A_21079_CDS 225 582 225 582 PF03081.15 Exo70 Family 1 376 376 335.0 5.8e-100 1 CL0295
Cotton_A_19918_CDS 37 222 37 223 PF00406.22 ADK Domain 1 150 151 199.3 3.3e-59 1 CL0023
Cotton_A_19918_CDS 159 194 159 194 PF05191.14 ADK_lid Domain 1 36 36 63.8 1e-17 1 No_clan
Cotton_A_33521_CDS 117 252 49 273 PF10508.9 Proteasom_PSMB Family 115 239 497 38.9 3.7e-10 1 CL0020
Cotton_A_20784_CDS 481 543 481 545 PF00076.22 RRM_1 Domain 1 68 70 32.8 4.5e-08 1 CL0221
Cotton_A_22838_CDS 171 231 171 231 PF13855.6 LRR_8 Repeat 1 61 61 28.7 8e-07 1 CL0022
Cotton_A_22838_CDS 244 302 243 303 PF13855.6 LRR_8 Repeat 2 60 61 38.3 8.4e-10 1 CL0022
Cotton_A_22838_CDS 316 335 316 338 PF00560.33 LRR_1 Repeat 1 20 23 12.3 0.2 1 CL0022
Cotton_A_22838_CDS 463 726 458 728 PF00069.25 Pkinase Domain 6 260 264 160.3 5.6e-47 1 CL0016
Cotton_A_29747_CDS 8 351 7 356 PF01494.19 FAD_binding_3 Family 2 340 349 84.6 7.8e-24 1 CL0063
Cotton_A_25685_CDS 124 150 123 152 PF01535.20 PPR Family 2 28 31 12.8 0.11 1 CL0020
Cotton_A_25685_CDS 162 186 158 187 PF01535.20 PPR Family 6 30 31 9.9 0.89 1 CL0020
Cotton_A_25685_CDS 193 219 192 220 PF01535.20 PPR Family 2 28 31 14.8 0.025 1 CL0020
Cotton_A_25685_CDS 223 271 223 272 PF13041.6 PPR_2 Repeat 1 49 50 41.2 1.4e-10 1 CL0020
Cotton_A_25685_CDS 296 326 296 326 PF01535.20 PPR Family 1 31 31 15.5 0.015 1 CL0020
Cotton_A_25685_CDS 328 378 328 378 PF13041.6 PPR_2 Repeat 1 50 50 51.6 8.1e-14 1 CL0020
Cotton_A_25685_CDS 438 482 437 485 PF13041.6 PPR_2 Repeat 2 46 50 34.4 1.8e-08 1 CL0020
Cotton_A_26457_CDS 14 43 14 45 PF00249.31 Myb_DNA-binding Domain 1 29 46 26.5 5.3e-06 1 CL0123
Cotton_A_26457_CDS 46 85 46 85 PF00249.31 Myb_DNA-binding Domain 7 46 46 50.8 1.4e-13 1 CL0123
Cotton_A_30096_CDS 38 82 37 82 PF08263.12 LRRNT_2 Family 2 41 41 33.7 3.2e-08 1 No_clan
Cotton_A_30096_CDS 95 148 94 150 PF13855.6 LRR_8 Repeat 6 59 61 29.9 3.5e-07 1 CL0022
Cotton_A_30096_CDS 210 231 210 232 PF00560.33 LRR_1 Repeat 1 22 23 11.2 0.46 1 CL0022
Cotton_A_30096_CDS 254 270 253 270 PF13516.6 LRR_6 Repeat 2 18 24 9.9 0.84 1 CL0022
Cotton_A_30096_CDS 400 441 400 446 PF12799.7 LRR_4 Repeat 1 40 44 28.7 1.2e-06 1 CL0022
Cotton_A_30096_CDS 622 679 620 680 PF13855.6 LRR_8 Repeat 3 60 61 28.6 9.1e-07 1 CL0022
Cotton_A_30096_CDS 812 1016 811 1083 PF00069.25 Pkinase Domain 2 200 264 150.3 6.6e-44 1 CL0016
Cotton_A_19826_CDS 102 176 102 177 PF16282.5 SANT_DAMP1_like Domain 1 79 80 107.5 3e-31 1 CL0123
Cotton_A_19826_CDS 319 381 295 391 PF05499.12 DMAP1 Family 92 153 165 27.5 2.4e-06 1 No_clan
Cotton_A_22750_CDS 258 284 257 287 PF01535.20 PPR Family 2 28 31 17.8 0.0028 1 CL0020
Cotton_A_22750_CDS 364 420 364 425 PF13812.6 PPR_3 Repeat 2 58 63 21.0 0.00026 1 CL0020
Cotton_A_22750_CDS 484 530 480 530 PF13812.6 PPR_3 Repeat 16 63 63 24.0 2.9e-05 1 CL0020
Cotton_A_30068_CDS 161 218 161 218 PF12906.7 RINGv Domain 1 48 48 29.1 7.7e-07 1 CL0229
Cotton_A_38200_CDS 17 242 17 242 PF00244.20 14-3-3 Domain 1 222 222 322.4 1.3e-96 1 No_clan
Cotton_A_35870_CDS 31 188 15 198 PF13968.6 DUF4220 Family 26 181 347 117.0 1.2e-33 1 No_clan
Cotton_A_28954_CDS 373 509 372 510 PF01399.27 PCI Domain 2 104 105 73.0 2.4e-20 1 CL0123
Cotton_A_00478_CDS 419 508 417 509 PF16561.5 AMPK1_CBM Family 3 80 85 56.9 1.8e-15 1 CL0369
Cotton_A_03470_CDS 27 277 25 278 PF00139.19 Lectin_legB Domain 3 248 249 259.5 3e-77 1 CL0004
Cotton_A_03470_CDS 348 614 348 616 PF00069.25 Pkinase Domain 1 260 264 160.5 5e-47 1 CL0016
Cotton_A_36305_CDS 16 233 16 233 PF01487.15 DHquinase_I Domain 1 229 229 231.5 1.5e-68 1 CL0036
Cotton_A_36305_CDS 247 327 247 327 PF08501.11 Shikimate_dh_N Domain 1 83 83 87.1 6.8e-25 1 CL0603
Cotton_A_36305_CDS 368 438 360 471 PF01488.20 Shikimate_DH Family 10 84 138 34.3 2.1e-08 1 CL0063
Cotton_A_36305_CDS 488 516 488 517 PF18317.1 SDH_C Domain 1 29 31 38.8 5.7e-10 1 No_clan
Cotton_A_10850_CDS 151 296 147 304 PF07714.17 Pkinase_Tyr Domain 5 153 259 92.2 3.1e-26 1 CL0016
Cotton_A_27185_CDS 95 249 93 250 PF00160.21 Pro_isomerase Domain 3 157 158 161.4 1.9e-47 1 CL0475
Cotton_A_25849_CDS 16 307 16 307 PF00069.25 Pkinase Domain 1 264 264 224.2 1.9e-66 1 CL0016
Cotton_A_04407_CDS 70 100 68 101 PF12854.7 PPR_1 Repeat 3 33 34 28.9 6.9e-07 1 CL0020
Cotton_A_04407_CDS 178 203 177 205 PF01535.20 PPR Family 2 27 31 15.9 0.011 1 CL0020
Cotton_A_04407_CDS 277 401 277 401 PF14432.6 DYW_deaminase Family 1 127 127 125.8 9.1e-37 1 CL0109
Cotton_A_16512_CDS 5 142 2 142 PF04535.12 DUF588 Domain 4 150 150 126.6 6.7e-37 1 CL0396
Cotton_A_11171_CDS 8 178 8 179 PF00071.22 Ras Domain 1 161 162 174.9 9.5e-52 1 CL0023
Cotton_A_03920_CDS 22 71 21 72 PF00847.20 AP2 Domain 2 53 54 51.5 8.6e-14 1 CL0081
Cotton_A_29952_CDS 78 103 77 104 PF16045.5 LisH_2 Domain 2 27 28 46.5 1.3e-12 1 CL0561
Cotton_A_29009_CDS 13 120 13 120 PF18086.1 PPIP5K2_N Domain 1 90 90 89.8 9.3e-26 1 CL0483
Cotton_A_29009_CDS 377 945 377 945 PF00328.22 His_Phos_2 Family 1 383 383 419.0 2.2e-125 1 CL0071
Cotton_A_05623_CDS 251 380 251 381 PF00004.29 AAA Domain 1 131 132 151.2 2.1e-44 1 CL0023
Cotton_A_05623_CDS 403 446 403 447 PF17862.1 AAA_lid_3 Domain 1 44 45 40.4 1.9e-10 1 CL0671
Cotton_A_05623_CDS 462 641 461 642 PF01434.18 Peptidase_M41 Domain 2 190 191 215.7 4.9e-64 1 CL0126
Cotton_A_07383_CDS 28 247 28 247 PF00314.17 Thaumatin Domain 1 214 214 276.9 1.1e-82 1 CL0293
Cotton_A_33352_CDS 26 102 22 102 PF06880.11 DUF1262 Family 6 83 99 45.2 9.5e-12 1 No_clan
Cotton_A_37572_CDS 54 201 54 204 PF00719.19 Pyrophosphatase Domain 1 155 160 172.5 5.5e-51 1 No_clan
Cotton_A_39175_CDS 34 210 34 210 PF00197.18 Kunitz_legume Domain 1 175 175 143.1 8e-42 1 CL0066
Cotton_A_22329_CDS 44 212 43 217 PF02776.18 TPP_enzyme_N Domain 2 165 172 121.2 3.4e-35 1 CL0254
Cotton_A_22329_CDS 241 358 241 374 PF00205.22 TPP_enzyme_M Domain 1 118 137 72.4 2.9e-20 1 CL0085
Cotton_A_22329_CDS 451 576 418 576 PF02775.21 TPP_enzyme_C Domain 24 153 153 54.0 1.6e-14 1 CL0254
Cotton_A_27594_CDS 2 151 1 152 PF14543.6 TAXi_N Domain 15 177 178 99.5 2.5e-28 1 CL0129
Cotton_A_27594_CDS 174 323 173 324 PF14541.6 TAXi_C Domain 2 160 161 110.6 6.3e-32 1 CL0129
Cotton_A_24080_CDS 121 346 121 347 PF07859.13 Abhydrolase_3 Domain 1 210 211 219.8 3.5e-65 1 CL0028
Cotton_A_38070_CDS 36 87 35 87 PF17284.2 Spermine_synt_N Domain 2 53 53 53.5 1.6e-14 1 No_clan
Cotton_A_38070_CDS 90 212 90 213 PF01564.17 Spermine_synth Domain 1 124 188 92.5 2.2e-26 1 CL0063
Cotton_A_26000_CDS 164 178 159 179 PF14383.6 VARLMGL Domain 10 24 32 23.5 3e-05 1 No_clan
Cotton_A_26000_CDS 579 718 579 718 PF14309.6 DUF4378 Family 1 165 165 64.5 1.5e-17 1 No_clan
Cotton_A_35649_CDS 9 189 1 189 PF14009.6 DUF4228 Family 4 179 179 131.7 3.8e-38 1 No_clan
Cotton_A_05704_CDS 92 129 92 129 PF06596.11 PsbX Family 1 39 39 62.6 2.5e-17 1 No_clan
Cotton_A_19424_CDS 93 462 67 476 PF00067.22 p450 Domain 71 447 463 227.5 2.8e-67 1 No_clan
Cotton_A_32482_CDS 139 222 138 222 PF03439.13 Spt5-NGN Family 2 84 84 67.2 8.6e-19 1 CL0439
Cotton_A_37889_CDS 47 274 15 277 PF00664.23 ABC_membrane Family 43 271 274 140.1 1.1e-40 1 CL0241
Cotton_A_37889_CDS 345 493 344 493 PF00005.27 ABC_tran Domain 2 137 137 113.1 1.3e-32 1 CL0023
Cotton_A_37889_CDS 650 919 649 922 PF00664.23 ABC_membrane Family 2 270 274 174.5 3.5e-51 1 CL0241
Cotton_A_37889_CDS 992 1140 990 1140 PF00005.27 ABC_tran Domain 3 137 137 117.9 4.6e-34 1 CL0023
Cotton_A_04153_CDS 85 135 84 135 PF17181.4 EPF Family 2 53 53 72.0 2.9e-20 1 No_clan
Cotton_A_19310_CDS 63 107 63 107 PF02671.21 PAH Repeat 1 45 45 56.4 2.4e-15 1 No_clan
Cotton_A_19310_CDS 149 193 149 193 PF02671.21 PAH Repeat 1 45 45 67.4 8.6e-19 1 No_clan
Cotton_A_19310_CDS 359 403 359 403 PF02671.21 PAH Repeat 1 45 45 38.2 1.1e-09 1 No_clan
Cotton_A_19310_CDS 498 589 498 592 PF08295.12 Sin3_corepress Domain 1 94 98 126.6 3.1e-37 1 No_clan
Cotton_A_19310_CDS 1152 1399 1152 1399 PF16879.5 Sin3a_C Family 1 286 286 205.6 1.3e-60 1 No_clan
Cotton_A_01337_CDS 153 228 153 229 PF02179.16 BAG Family 1 74 75 64.0 1.3e-17 1 No_clan
Cotton_A_30979_CDS 147 276 146 320 PF02390.17 Methyltransf_4 Family 10 136 173 106.6 9.6e-31 1 CL0063
Cotton_A_04609_CDS 152 288 149 290 PF01529.20 DHHC Family 4 132 134 116.2 1.1e-33 1 No_clan
Cotton_A_15906_CDS 34 384 34 384 PF12819.7 Malectin_like Domain 1 336 336 132.2 2.3e-38 1 CL0202
Cotton_A_15906_CDS 497 759 492 762 PF07714.17 Pkinase_Tyr Domain 6 256 259 168.3 1.9e-49 1 CL0016
Cotton_A_15557_CDS 66 182 65 183 PF01042.21 Ribonuc_L-PSP Domain 2 120 121 142.0 8.7e-42 1 CL0534
Cotton_A_12422_CDS 13 334 12 335 PF00291.25 PALP Family 2 293 294 220.2 3.8e-65 1 CL0063
Cotton_A_00064_CDS 153 202 152 202 PF00249.31 Myb_DNA-binding Domain 2 46 46 34.3 1.9e-08 1 CL0123
Cotton_A_36695_CDS 7 132 6 132 PF02365.15 NAM Family 2 126 126 127.9 4.1e-37 1 No_clan
Cotton_A_21493_CDS 2 52 1 82 PF18052.1 Rx_N Domain 35 85 93 45.5 7e-12 1 No_clan
Cotton_A_21493_CDS 124 195 123 201 PF00931.22 NB-ARC Domain 2 73 252 40.6 1.6e-10 1 CL0023
Cotton_A_31284_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 53.4 2.1e-14 1 CL0123
Cotton_A_31284_CDS 67 111 67 112 PF00249.31 Myb_DNA-binding Domain 1 45 46 59.8 2.2e-16 1 CL0123
Cotton_A_19913_CDS 5 105 4 108 PF03650.13 MPC Family 2 102 110 128.1 1.5e-37 1 CL0141
Cotton_A_15834_CDS 85 138 84 138 PF14416.6 PMR5N Domain 2 53 53 79.6 1.6e-22 1 No_clan
Cotton_A_15834_CDS 139 426 139 427 PF13839.6 PC-Esterase Family 1 282 283 314.0 1.1e-93 1 CL0264
Cotton_A_06837_CDS 195 282 193 305 PF08268.12 FBA_3 Domain 3 95 128 33.1 4.4e-08 1 CL0162
Cotton_A_36600_CDS 1 247 1 247 PF05910.12 DUF868 Family 30 279 279 304.3 9.1e-91 1 No_clan
Cotton_A_09369_CDS 97 179 93 196 PF00085.20 Thioredoxin Domain 5 86 103 67.5 8.1e-19 1 CL0172
Cotton_A_25206_CDS 37 112 30 112 PF02298.17 Cu_bind_like Domain 8 84 84 87.3 5.2e-25 1 CL0026
Cotton_A_13654_CDS 297 353 297 353 PF06830.11 Root_cap Family 1 57 57 84.3 4.4e-24 1 No_clan
Cotton_A_37323_CDS 34 145 34 145 PF13640.6 2OG-FeII_Oxy_3 Domain 1 96 96 73.4 2.1e-20 1 CL0029
Cotton_A_11035_CDS 15 76 14 79 PF00191.20 Annexin Family 2 63 66 70.0 1.3e-19 1 No_clan
Cotton_A_11035_CDS 87 150 86 151 PF00191.20 Annexin Family 2 65 66 47.5 1.4e-12 1 No_clan
Cotton_A_11035_CDS 171 217 169 219 PF00191.20 Annexin Family 3 49 66 36.7 3.3e-09 1 No_clan
Cotton_A_11035_CDS 241 306 241 306 PF00191.20 Annexin Family 1 66 66 45.0 8e-12 1 No_clan
Cotton_A_07307_CDS 105 526 105 529 PF00854.21 PTR2 Family 1 392 395 315.1 6.1e-94 1 CL0015
Cotton_A_31306_CDS 99 153 98 154 PF00046.29 Homeodomain Domain 2 56 57 60.8 8.5e-17 1 CL0123
Cotton_A_31306_CDS 155 189 155 190 PF02183.18 HALZ Coiled-coil 1 42 43 38.9 7.6e-10 1 No_clan
Cotton_A_35466_CDS 129 530 128 536 PF00082.22 Peptidase_S8 Domain 2 222 298 200.3 4.2e-59 1 No_clan
Cotton_A_05034_CDS 4 263 4 263 PF00069.25 Pkinase Domain 1 264 264 236.1 4.1e-70 1 CL0016
Cotton_A_02021_CDS 48 103 47 103 PF00046.29 Homeodomain Domain 2 57 57 61.1 6.5e-17 1 CL0123
Cotton_A_05788_CDS 337 410 336 410 PF02020.18 W2 Family 2 76 79 69.8 1.6e-19 1 CL0020
Cotton_A_24286_CDS 36 159 34 159 PF04852.12 DUF640 Family 3 126 126 217.7 4.1e-65 1 No_clan
Cotton_A_38010_CDS 76 116 72 117 PF00569.17 ZZ Domain 5 44 45 37.2 1.9e-09 1 CL0006
Cotton_A_38010_CDS 135 177 134 179 PF00249.31 Myb_DNA-binding Domain 3 44 46 42.6 5.1e-11 1 CL0123
Cotton_A_33880_CDS 13 75 13 75 PF00462.24 Glutaredoxin Domain 1 60 60 45.9 4.9e-12 1 CL0172
Cotton_A_07768_CDS 10 45 10 65 PF00249.31 Myb_DNA-binding Domain 1 35 46 36.1 5.4e-09 1 CL0123
Cotton_A_07768_CDS 319 394 312 396 PF00439.25 Bromodomain Domain 8 82 84 36.9 2.9e-09 1 No_clan
Cotton_A_09778_CDS 1 181 1 181 PF14009.6 DUF4228 Family 1 179 179 110.2 1.5e-31 1 No_clan
Cotton_A_39320_CDS 109 544 109 545 PF00854.21 PTR2 Family 1 394 395 264.9 1.1e-78 1 CL0015
Cotton_A_28658_CDS 25 122 22 130 PF13589.6 HATPase_c_3 Domain 4 101 137 29.6 5.1e-07 1 CL0025
Cotton_A_28658_CDS 218 347 214 349 PF01119.19 DNA_mis_repair Family 5 117 119 41.5 9.1e-11 1 CL0329
Cotton_A_28658_CDS 968 1011 966 1040 PF08676.11 MutL_C Domain 4 47 147 26.8 3.6e-06 1 No_clan
Cotton_A_14593_CDS 33 121 32 208 PF03634.13 TCP Family 2 90 156 116.5 1.6e-33 1 No_clan
Cotton_A_03071_CDS 189 283 187 290 PF01733.18 Nucleoside_tran Family 3 93 309 68.5 6.3e-19 1 CL0015
Cotton_A_03071_CDS 296 455 289 457 PF01733.18 Nucleoside_tran Family 137 307 309 118.7 3.3e-34 1 CL0015
Cotton_A_24530_CDS 42 88 41 88 PF03107.16 C1_2 Domain 2 47 47 45.7 6e-12 1 CL0006
Cotton_A_24530_CDS 97 145 97 145 PF03107.16 C1_2 Domain 1 47 47 31.2 1.9e-07 1 CL0006
Cotton_A_24530_CDS 154 200 154 200 PF03107.16 C1_2 Domain 1 47 47 37.7 1.9e-09 1 CL0006
Cotton_A_29899_CDS 13 100 2 100 PF07173.12 GRDP-like Family 58 142 142 31.7 2e-07 1 No_clan
Cotton_A_29899_CDS 96 240 96 240 PF07173.12 GRDP-like Family 1 142 142 185.4 8.2e-55 1 No_clan
Cotton_A_08899_CDS 3 46 1 47 PF00643.24 zf-B_box Domain 4 41 42 28.4 1.4e-06 1 No_clan
Cotton_A_08899_CDS 56 97 54 101 PF00643.24 zf-B_box Domain 3 38 42 26.7 4.7e-06 1 No_clan
Cotton_A_34949_CDS 219 300 218 307 PF00355.26 Rieske Domain 2 84 89 77.5 5.5e-22 1 CL0516
Cotton_A_34949_CDS 406 500 406 503 PF08417.12 PaO Family 1 85 88 54.5 1e-14 1 No_clan
Cotton_A_02835_CDS 82 164 70 167 PF00085.20 Thioredoxin Domain 15 98 103 30.7 2.4e-07 1 CL0172
Cotton_A_20502_CDS 47 226 47 244 PF00933.21 Glyco_hydro_3 Domain 1 163 319 91.9 4.7e-26 1 CL0058
Cotton_A_20502_CDS 258 332 230 332 PF00933.21 Glyco_hydro_3 Domain 246 319 319 35.1 9e-09 1 CL0058
Cotton_A_20502_CDS 369 578 369 579 PF01915.22 Glyco_hydro_3_C Domain 1 203 204 117.3 8.3e-34 1 No_clan
Cotton_A_02424_CDS 62 289 62 290 PF01269.17 Fibrillarin Domain 1 225 226 367.9 1.3e-110 1 CL0063
Cotton_A_10367_CDS 32 494 32 494 PF00171.22 Aldedh Family 1 462 462 588.5 7.1e-177 1 CL0099
Cotton_A_33779_CDS 60 111 58 112 PF01344.25 Kelch_1 Repeat 3 45 46 28.0 1.2e-06 1 CL0186
Cotton_A_32495_CDS 78 175 75 177 PF03168.13 LEA_2 Domain 4 99 101 61.6 8.4e-17 1 CL0159
Cotton_A_19408_CDS 106 196 103 198 PF02362.21 B3 Family 4 99 101 66.8 1.2e-18 1 CL0405
Cotton_A_20123_CDS 267 351 267 352 PF00439.25 Bromodomain Domain 1 83 84 73.5 1.1e-20 1 No_clan
Cotton_A_20123_CDS 461 522 460 523 PF17035.5 BET Domain 2 63 64 81.8 2.9e-23 1 CL0665
Cotton_A_00253_CDS 39 105 38 106 PF03810.19 IBN_N Family 2 73 74 48.5 6.1e-13 1 CL0020
Cotton_A_00253_CDS 408 461 408 462 PF13513.6 HEAT_EZ Repeat 1 54 55 42.8 5.3e-11 1 CL0020
Cotton_A_35334_CDS 6 53 1 54 PF16363.5 GDP_Man_Dehyd Domain 284 331 332 29.3 5.4e-07 1 CL0063
Cotton_A_15093_CDS 37 77 36 78 PF08263.12 LRRNT_2 Family 3 40 41 32.0 1.1e-07 1 No_clan
Cotton_A_15093_CDS 130 189 128 189 PF13855.6 LRR_8 Repeat 3 61 61 35.8 4.9e-09 1 CL0022
Cotton_A_15093_CDS 361 627 358 628 PF07714.17 Pkinase_Tyr Domain 5 258 259 101.5 4.5e-29 1 CL0016
Cotton_A_09099_CDS 47 116 46 117 PF00173.28 Cyt-b5 Domain 2 73 74 69.8 1.6e-19 1 No_clan
Cotton_A_00335_CDS 33 145 31 146 PF07732.15 Cu-oxidase_3 Domain 3 117 119 133.4 3.8e-39 1 CL0026
Cotton_A_00335_CDS 158 307 157 308 PF00394.22 Cu-oxidase Domain 2 158 159 145.5 1.5e-42 1 CL0026
Cotton_A_00335_CDS 409 540 408 542 PF07731.14 Cu-oxidase_2 Domain 2 135 137 135.7 8.2e-40 1 CL0026
Cotton_A_34974_CDS 118 290 118 294 PF00270.29 DEAD Domain 1 169 176 103.3 1.2e-29 1 CL0023
Cotton_A_34974_CDS 340 456 336 458 PF00271.31 Helicase_C Family 5 109 111 59.7 3.2e-16 1 CL0023
Cotton_A_39646_CDS 76 174 17 184 PF04998.17 RNA_pol_Rpb1_5 Domain 170 258 267 76.9 1.7e-21 1 No_clan
Cotton_A_10140_CDS 64 110 62 111 PF00010.26 HLH Domain 3 52 53 46.4 2.8e-12 1 No_clan
Cotton_A_24102_CDS 75 225 75 226 PF00406.22 ADK Domain 1 150 151 92.0 3.8e-26 1 CL0023
Cotton_A_04069_CDS 45 85 45 87 PF12937.7 F-box-like Domain 1 41 48 34.0 1.9e-08 1 CL0271
Cotton_A_04069_CDS 377 430 375 432 PF03478.18 DUF295 Domain 4 53 55 27.6 1.5e-06 1 No_clan
Cotton_A_18721_CDS 240 408 211 413 PF00201.18 UDPGT Family 239 388 499 90.1 1.4e-25 1 CL0113
Cotton_A_33940_CDS 205 348 205 349 PF03033.20 Glyco_transf_28 Family 1 138 139 115.9 1.3e-33 1 CL0113
Cotton_A_33940_CDS 458 602 434 608 PF00201.18 UDPGT Family 278 421 499 32.3 4.5e-08 1 CL0113
Cotton_A_03331_CDS 53 166 53 166 PF02136.20 NTF2 Domain 1 120 120 131.1 2.9e-38 1 CL0051
Cotton_A_38701_CDS 13 102 13 102 PF00447.17 HSF_DNA-bind Domain 1 96 96 98.2 3.1e-28 1 CL0123
Cotton_A_20325_CDS 264 294 256 295 PF00400.32 WD40 Repeat 8 37 38 28.0 2.7e-06 1 CL0186
Cotton_A_20325_CDS 362 397 361 398 PF00400.32 WD40 Repeat 2 37 38 26.7 7.1e-06 1 CL0186
Cotton_A_20325_CDS 404 449 402 449 PF00400.32 WD40 Repeat 3 37 38 19.0 0.0019 1 CL0186
Cotton_A_20325_CDS 549 584 544 584 PF00400.32 WD40 Repeat 6 38 38 12.1 0.28 1 CL0186
Cotton_A_22233_CDS 65 304 36 309 PF00481.21 PP2C Family 34 251 258 145.1 3e-42 1 CL0238
Cotton_A_29327_CDS 55 441 51 447 PF00501.28 AMP-binding Family 7 402 423 293.2 2.5e-87 1 CL0378
Cotton_A_29327_CDS 446 501 445 516 PF13193.6 AMP-binding_C Domain 2 57 76 34.4 3.3e-08 1 CL0531
Cotton_A_08211_CDS 43 100 43 101 PF04927.12 SMP Family 1 58 59 69.7 2.1e-19 1 No_clan
Cotton_A_08211_CDS 108 165 108 167 PF04927.12 SMP Family 1 57 59 63.2 2.4e-17 1 No_clan
Cotton_A_00510_CDS 30 376 28 380 PF00224.21 PK Family 4 344 348 302.7 2.9e-90 1 CL0151
Cotton_A_00510_CDS 395 519 395 523 PF02887.16 PK_C Domain 1 113 117 83.1 1.7e-23 1 No_clan
Cotton_A_01616_CDS 51 228 47 229 PF10294.9 Methyltransf_16 Family 6 173 174 117.3 5.8e-34 1 CL0063
Cotton_A_04762_CDS 13 46 11 53 PF00646.33 F-box Domain 3 36 48 23.1 4.9e-05 1 CL0271
Cotton_A_04762_CDS 169 193 169 194 PF07723.13 LRR_2 Repeat 1 25 26 28.1 2.2e-06 1 CL0022
Cotton_A_04762_CDS 342 385 340 385 PF08387.10 FBD Family 3 46 46 40.7 1.6e-10 1 No_clan
Cotton_A_31034_CDS 24 133 24 136 PF03874.16 RNA_pol_Rpb4 Family 1 120 123 82.4 3e-23 1 CL0426
Cotton_A_24268_CDS 207 516 204 573 PF07995.11 GSDH Domain 6 247 332 81.3 7.7e-23 1 CL0186
Cotton_A_02904_CDS 32 62 30 62 PF06200.14 tify Domain 3 34 34 53.2 1.3e-14 1 No_clan
Cotton_A_02904_CDS 99 120 86 120 PF09425.10 CCT_2 Motif 5 26 26 43.1 2.7e-11 1 CL0281
Cotton_A_33775_CDS 156 303 156 303 PF01926.23 MMR_HSR1 Family 1 114 114 83.3 1.3e-23 1 CL0023
Cotton_A_33775_CDS 365 486 364 486 PF01926.23 MMR_HSR1 Family 2 114 114 84.5 5.3e-24 1 CL0023
Cotton_A_33775_CDS 545 626 545 626 PF14714.6 KH_dom-like Domain 1 80 80 106.8 5.2e-31 1 No_clan
Cotton_A_28952_CDS 37 83 36 83 PF13639.6 zf-RING_2 Domain 2 44 44 34.9 1.4e-08 1 CL0229
Cotton_A_25099_CDS 6 137 5 151 PF04535.12 DUF588 Domain 2 150 150 86.2 1.9e-24 1 CL0396
Cotton_A_30366_CDS 85 176 80 180 PF00854.21 PTR2 Family 6 96 395 22.4 4.8e-05 1 CL0015
Cotton_A_31893_CDS 77 263 77 265 PF02190.16 LON_substr_bdg Family 1 206 208 93.2 2e-26 1 CL0178
Cotton_A_04603_CDS 190 269 187 270 PF00439.25 Bromodomain Domain 4 83 84 81.8 2.8e-23 1 No_clan
Cotton_A_22502_CDS 47 148 47 149 PF13664.6 DUF4149 Domain 1 101 102 91.8 2.9e-26 1 CL0430
Cotton_A_32048_CDS 75 124 75 125 PF13041.6 PPR_2 Repeat 1 49 50 33.5 3.6e-08 1 CL0020
Cotton_A_32048_CDS 152 179 152 179 PF01535.20 PPR Family 4 31 31 10.8 0.49 1 CL0020
Cotton_A_32048_CDS 180 204 180 210 PF01535.20 PPR Family 1 25 31 11.2 0.37 1 CL0020
Cotton_A_32048_CDS 211 240 211 241 PF01535.20 PPR Family 1 30 31 26.4 5e-06 1 CL0020
Cotton_A_32048_CDS 243 270 242 271 PF01535.20 PPR Family 2 29 31 23.7 3.6e-05 1 CL0020
Cotton_A_32048_CDS 273 302 273 303 PF01535.20 PPR Family 1 30 31 24.3 2.3e-05 1 CL0020
Cotton_A_32048_CDS 372 419 372 421 PF13041.6 PPR_2 Repeat 1 48 50 37.7 1.7e-09 1 CL0020
Cotton_A_32048_CDS 448 472 448 474 PF01535.20 PPR Family 3 27 31 11.0 0.42 1 CL0020
Cotton_A_35113_CDS 40 114 36 115 PF04667.17 Endosulfine Family 5 79 80 86.9 7.3e-25 1 No_clan
Cotton_A_08661_CDS 25 114 25 114 PF00447.17 HSF_DNA-bind Domain 1 96 96 103.5 7e-30 1 CL0123
Cotton_A_16436_CDS 78 258 78 260 PF17047.5 SMP_LBD Domain 1 178 180 69.1 3.2e-19 1 CL0648
Cotton_A_16436_CDS 271 369 271 375 PF00168.30 C2 Domain 1 97 103 84.0 7.5e-24 1 CL0154
Cotton_A_16436_CDS 430 532 429 532 PF00168.30 C2 Domain 2 103 103 53.9 1.8e-14 1 CL0154
Cotton_A_27526_CDS 23 159 22 159 PF01397.21 Terpene_synth Domain 2 155 192 115.3 2.7e-33 1 No_clan
Cotton_A_29681_CDS 69 200 69 218 PF07786.12 DUF1624 Family 1 122 223 32.3 6.9e-08 1 CL0316
Cotton_A_16015_CDS 10 348 9 348 PF03547.18 Mem_trans Family 2 387 387 321.5 4.7e-96 1 CL0064
Cotton_A_17580_CDS 107 147 105 147 PF01476.20 LysM Domain 3 44 44 53.4 1.9e-14 1 CL0187
Cotton_A_16122_CDS 31 235 31 236 PF00314.17 Thaumatin Domain 1 213 214 258.1 6.1e-77 1 CL0293
Cotton_A_29667_CDS 102 183 101 183 PF02319.20 E2F_TDP Domain 2 71 71 86.4 9.7e-25 1 CL0123
Cotton_A_29667_CDS 191 320 190 325 PF08781.10 DP Domain 2 131 138 135.1 1.4e-39 1 No_clan
Cotton_A_27503_CDS 48 508 48 514 PF00067.22 p450 Domain 1 457 463 343.3 2e-102 1 No_clan
Cotton_A_27638_CDS 16 286 16 298 PF12819.7 Malectin_like Domain 1 247 336 80.5 1.3e-22 1 CL0202
Cotton_A_36971_CDS 103 309 102 314 PF01061.24 ABC2_membrane Family 2 205 210 114.7 3.8e-33 1 CL0181
Cotton_A_02506_CDS 15 128 14 129 PF07732.15 Cu-oxidase_3 Domain 2 117 119 128.1 1.6e-37 1 CL0026
Cotton_A_02506_CDS 140 282 140 283 PF00394.22 Cu-oxidase Domain 1 158 159 127.2 6.2e-37 1 CL0026
Cotton_A_02506_CDS 370 502 362 505 PF07731.14 Cu-oxidase_2 Domain 9 134 137 83.6 1e-23 1 CL0026
Cotton_A_39067_CDS 121 181 121 181 PF13921.6 Myb_DNA-bind_6 Domain 1 60 60 56.8 1.9e-15 1 CL0123
Cotton_A_15108_CDS 177 218 176 219 PF13639.6 zf-RING_2 Domain 2 43 44 47.8 1.4e-12 1 CL0229
Cotton_A_31476_CDS 10 186 8 186 PF04525.12 LOR Domain 3 187 187 145.0 1.9e-42 1 CL0395
Cotton_A_34445_CDS 11 73 11 73 PF05676.13 NDUF_B7 Family 1 63 63 99.0 8.7e-29 1 CL0351
Cotton_A_37025_CDS 85 134 81 134 PF04570.14 zf-FLZ Domain 5 54 54 89.6 6.5e-26 1 CL0175
Cotton_A_21174_CDS 37 123 36 126 PF00855.17 PWWP Domain 2 92 96 55.7 5e-15 1 CL0049
Cotton_A_21174_CDS 185 235 185 235 PF05964.14 FYRN Family 1 51 51 53.1 2.1e-14 1 No_clan
Cotton_A_21174_CDS 245 320 244 328 PF05965.14 FYRC Family 2 79 84 43.4 2.8e-11 1 No_clan
Cotton_A_21174_CDS 361 396 361 396 PF13831.6 PHD_2 Family 1 36 36 43.5 1.6e-11 1 CL0390
Cotton_A_21174_CDS 405 527 404 527 PF13832.6 zf-HC5HC2H_2 Domain 2 110 110 114.7 2.2e-33 1 CL0390
Cotton_A_21174_CDS 662 768 662 769 PF00856.28 SET Family 1 168 169 61.5 1.3e-16 1 No_clan
Cotton_A_25055_CDS 205 236 201 237 PF00400.32 WD40 Repeat 7 37 38 33.9 3.6e-08 1 CL0186
Cotton_A_25055_CDS 287 323 286 323 PF00400.32 WD40 Repeat 2 38 38 28.5 1.8e-06 1 CL0186
Cotton_A_25055_CDS 328 364 327 364 PF00400.32 WD40 Repeat 2 37 38 22.3 0.00017 1 CL0186
Cotton_A_20323_CDS 26 73 26 74 PF00628.29 PHD Domain 1 51 52 43.0 3.2e-11 1 CL0390
Cotton_A_20323_CDS 250 325 48 325 PF00856.28 SET Family 122 169 169 22.9 9e-05 1 No_clan
Cotton_A_02163_CDS 68 499 67 500 PF01490.18 Aa_trans Family 2 408 409 327.2 1.2e-97 1 CL0062
Cotton_A_18756_CDS 30 120 29 122 PF14363.6 AAA_assoc Family 2 94 96 68.2 6e-19 1 No_clan
Cotton_A_18756_CDS 242 359 241 360 PF00004.29 AAA Domain 2 131 132 61.8 8.3e-17 1 CL0023
Cotton_A_02382_CDS 46 108 46 108 PF11347.8 DUF3148 Family 1 62 62 90.5 4e-26 1 No_clan
Cotton_A_17793_CDS 16 253 14 260 PF00378.20 ECH_1 Domain 3 241 251 189.1 8.2e-56 1 CL0127
Cotton_A_14652_CDS 52 486 51 486 PF00083.24 Sugar_tr Family 2 452 452 323.6 2.1e-96 1 CL0015
Cotton_A_37160_CDS 24 526 24 528 PF00118.24 Cpn60_TCP1 Family 1 489 491 353.6 1.6e-105 1 No_clan
Cotton_A_14127_CDS 86 272 85 272 PF04669.13 Polysacc_synt_4 Family 2 190 190 250.6 8e-75 1 No_clan
Cotton_A_37249_CDS 155 210 129 210 PF14372.6 DUF4413 Family 46 100 100 49.2 5.3e-13 1 No_clan
Cotton_A_18862_CDS 31 489 30 490 PF00083.24 Sugar_tr Family 2 451 452 386.0 2.3e-115 1 CL0015
Cotton_A_29707_CDS 11 439 10 439 PF07690.16 MFS_1 Family 2 353 353 62.8 2.7e-17 1 CL0015
Cotton_A_10176_CDS 18 359 18 359 PF00225.23 Kinesin Domain 1 333 333 392.6 1.2e-117 1 CL0023
Cotton_A_17715_CDS 72 207 72 208 PF00005.27 ABC_tran Domain 1 136 137 65.7 5.8e-18 1 CL0023
Cotton_A_17715_CDS 361 605 360 634 PF00664.23 ABC_membrane Family 2 250 274 93.3 2e-26 1 CL0241
Cotton_A_17715_CDS 700 846 698 846 PF00005.27 ABC_tran Domain 3 137 137 95.9 2.7e-27 1 CL0023
Cotton_A_41294_CDS 8 304 4 308 PF07224.11 Chlorophyllase Family 5 297 307 408.2 1.7e-122 1 CL0028
Cotton_A_30488_CDS 26 150 26 150 PF00782.20 DSPc Domain 1 133 133 85.9 2.1e-24 1 CL0031
Cotton_A_02853_CDS 40 137 39 138 PF14523.6 Syntaxin_2 Domain 2 100 101 82.1 2.9e-23 1 CL0445
Cotton_A_02853_CDS 224 275 224 275 PF05739.19 SNARE Family 2 53 53 45.1 7.3e-12 1 No_clan
Cotton_A_27018_CDS 76 364 76 365 PF08392.12 FAE1_CUT1_RppA Family 1 289 290 465.2 7.5e-140 1 CL0046
Cotton_A_27018_CDS 380 462 378 463 PF08541.10 ACP_syn_III_C Domain 10 89 90 48.6 6.7e-13 1 CL0046
Cotton_A_02321_CDS 296 454 296 455 PF00623.20 RNA_pol_Rpb1_2 Domain 1 165 166 109.3 2.2e-31 1 No_clan
Cotton_A_02321_CDS 459 606 458 607 PF04983.18 RNA_pol_Rpb1_3 Domain 2 156 157 66.9 1.9e-18 1 No_clan
Cotton_A_02321_CDS 680 731 665 750 PF05000.17 RNA_pol_Rpb1_4 Domain 25 77 108 38.8 6.9e-10 1 No_clan
Cotton_A_02321_CDS 1347 1420 1347 1420 PF11523.8 DUF3223 Family 1 75 75 82.6 2.7e-23 1 No_clan
Cotton_A_23835_CDS 116 159 115 159 PF13639.6 zf-RING_2 Domain 2 44 44 52.2 5.8e-14 1 CL0229
Cotton_A_15769_CDS 16 201 11 202 PF16213.5 DCB Family 9 177 178 84.7 6e-24 1 No_clan
Cotton_A_15769_CDS 298 461 296 461 PF12783.7 Sec7_N Domain 3 158 158 123.0 1e-35 1 No_clan
Cotton_A_15769_CDS 571 753 570 753 PF01369.20 Sec7 Domain 2 183 183 245.1 3.6e-73 1 No_clan
Cotton_A_15769_CDS 1121 1203 1121 1204 PF09324.10 DUF1981 Family 1 83 84 107.4 2.4e-31 1 No_clan
Cotton_A_04639_CDS 97 168 96 168 PF00240.23 ubiquitin Domain 2 72 72 62.8 1.9e-17 1 CL0072
Cotton_A_04639_CDS 570 873 569 880 PF00632.25 HECT Domain 2 301 307 234.3 2.1e-69 1 CL0552
Cotton_A_23515_CDS 24 97 13 99 PF00294.24 PfkB Family 224 300 302 40.8 1.6e-10 1 CL0118
Cotton_A_25230_CDS 14 86 1 87 PF00078.27 RVT_1 Family 60 132 222 39.6 4e-10 1 CL0027
Cotton_A_02436_CDS 78 214 78 216 PF01565.23 FAD_binding_4 Domain 1 136 139 92.6 1.8e-26 1 CL0077
Cotton_A_02436_CDS 473 530 473 530 PF08031.12 BBE Domain 1 46 46 79.7 1.2e-22 1 CL0277
Cotton_A_34188_CDS 60 380 59 383 PF02374.15 ArsA_ATPase Domain 2 302 305 243.6 2.5e-72 1 CL0023
Cotton_A_33914_CDS 127 399 126 407 PF01326.19 PPDK_N Family 2 220 328 141.3 4.1e-41 1 CL0179
Cotton_A_33914_CDS 409 464 400 466 PF01326.19 PPDK_N Family 269 326 328 45.8 4.7e-12 1 CL0179
Cotton_A_33914_CDS 530 611 527 611 PF00391.23 PEP-utilizers Family 4 73 73 89.4 8.7e-26 1 CL0364
Cotton_A_33914_CDS 625 989 623 990 PF02896.18 PEP-utilizers_C Domain 3 293 294 335.7 2e-100 1 CL0151
Cotton_A_06178_CDS 119 186 118 186 PF03776.14 MinE Family 2 68 68 53.6 1.7e-14 1 No_clan
Cotton_A_14161_CDS 3 139 3 139 PF05687.13 BES1_N Family 1 152 152 222.4 3.3e-66 1 No_clan
Cotton_A_05281_CDS 89 290 87 292 PF12706.7 Lactamase_B_2 Domain 3 199 201 76.2 2.4e-21 1 CL0381
Cotton_A_19316_CDS 402 457 402 458 PF06886.11 TPX2 Family 1 56 57 54.5 9.7e-15 1 No_clan
Cotton_A_03080_CDS 7 33 5 34 PF00641.18 zf-RanBP Domain 3 29 30 20.5 0.00021 1 CL0167
Cotton_A_03080_CDS 54 82 53 84 PF00641.18 zf-RanBP Domain 2 28 30 26.9 2.1e-06 1 CL0167
Cotton_A_03080_CDS 103 132 103 133 PF00641.18 zf-RanBP Domain 1 28 30 32.8 3.1e-08 1 CL0167
Cotton_A_32012_CDS 30 346 30 346 PF12819.7 Malectin_like Domain 1 336 336 188.5 1.8e-55 1 CL0202
Cotton_A_32012_CDS 439 497 438 497 PF13855.6 LRR_8 Repeat 2 61 61 35.8 5.1e-09 1 CL0022
Cotton_A_32012_CDS 619 884 616 887 PF00069.25 Pkinase Domain 4 259 264 161.9 1.9e-47 1 CL0016
Cotton_A_06799_CDS 84 564 84 564 PF00082.22 Peptidase_S8 Domain 1 298 298 138.9 2.1e-40 1 No_clan
Cotton_A_06799_CDS 347 420 325 420 PF02225.22 PA Family 20 89 89 43.0 3.5e-11 1 CL0364
Cotton_A_06799_CDS 617 714 617 714 PF17766.1 fn3_6 Domain 1 99 99 111.8 1.4e-32 1 CL0159
Cotton_A_33133_CDS 379 514 379 514 PF07526.11 POX Domain 1 136 136 164.5 1.9e-48 1 No_clan
Cotton_A_33133_CDS 584 623 584 623 PF05920.11 Homeobox_KN Family 1 40 40 63.9 8.8e-18 1 CL0123
Cotton_A_04271_CDS 32 173 7 173 PF04520.13 Senescence_reg Family 38 168 168 132.9 2e-38 1 No_clan
Cotton_A_09333_CDS 86 123 86 123 PF06596.11 PsbX Family 1 39 39 61.0 7.8e-17 1 No_clan
Cotton_A_20167_CDS 19 108 17 108 PF04576.15 Zein-binding Family 3 92 92 109.6 6.6e-32 1 No_clan
Cotton_A_09351_CDS 105 503 105 503 PF05834.12 Lycopene_cycl Family 1 380 380 529.0 6.6e-159 1 CL0063
Cotton_A_12259_CDS 40 212 40 222 PF01273.25 LBP_BPI_CETP Family 1 158 164 74.6 6.7e-21 1 CL0648
Cotton_A_12259_CDS 277 482 247 483 PF02886.17 LBP_BPI_CETP_C Domain 25 237 238 89.9 1.7e-25 1 CL0648
Cotton_A_36386_CDS 11 55 3 63 PF13771.6 zf-HC5HC2H Domain 23 68 90 32.9 5.6e-08 1 CL0390
Cotton_A_08074_CDS 51 108 47 108 PF09415.10 CENP-X Domain 13 75 75 54.9 8.3e-15 1 CL0012
Cotton_A_36682_CDS 29 122 29 124 PF14363.6 AAA_assoc Family 1 94 96 72.6 2.5e-20 1 No_clan
Cotton_A_36682_CDS 247 310 246 327 PF00004.29 AAA Domain 2 74 132 31.4 2.2e-07 1 CL0023
Cotton_A_35596_CDS 85 108 85 108 PF12874.7 zf-met Domain 2 25 25 26.9 4.4e-06 1 CL0361
Cotton_A_35596_CDS 240 264 240 264 PF12874.7 zf-met Domain 1 25 25 29.2 8.4e-07 1 CL0361
Cotton_A_31214_CDS 23 125 20 130 PF01398.21 JAB Family 4 112 118 50.3 2e-13 1 CL0366
Cotton_A_05699_CDS 4 99 4 100 PF07876.12 Dabb Domain 1 96 97 77.5 9e-22 1 CL0032
Cotton_A_05699_CDS 117 210 115 210 PF07876.12 Dabb Domain 4 97 97 52.2 6.9e-14 1 CL0032
Cotton_A_07933_CDS 15 117 11 117 PF02109.16 DAD Family 5 109 109 129.3 6.8e-38 1 No_clan
Cotton_A_24359_CDS 72 134 65 134 PF05498.11 RALF Family 9 65 65 75.6 4.6e-21 1 No_clan
Cotton_A_13466_CDS 23 52 23 55 PF02861.20 Clp_N Family 1 30 53 13.4 0.064 1 No_clan
Cotton_A_13466_CDS 130 167 129 168 PF02861.20 Clp_N Family 13 52 53 11.5 0.25 1 No_clan
Cotton_A_13062_CDS 16 79 15 80 PF00191.20 Annexin Family 2 65 66 51.8 6.4e-14 1 No_clan
Cotton_A_13062_CDS 88 151 87 152 PF00191.20 Annexin Family 2 65 66 51.4 8.5e-14 1 No_clan
Cotton_A_13062_CDS 171 236 170 236 PF00191.20 Annexin Family 2 66 66 80.8 5.6e-23 1 No_clan
Cotton_A_13062_CDS 246 311 246 311 PF00191.20 Annexin Family 1 66 66 84.8 3.2e-24 1 No_clan
Cotton_A_30347_CDS 1 338 1 338 PF03105.19 SPX Domain 1 384 384 256.6 7.4e-76 1 No_clan
Cotton_A_29051_CDS 265 625 264 626 PF03081.15 Exo70 Family 3 375 376 378.2 4.2e-113 1 CL0295
Cotton_A_38482_CDS 23 128 22 129 PF01624.20 MutS_I Domain 2 112 113 48.9 6.7e-13 1 No_clan
Cotton_A_38482_CDS 145 283 142 284 PF05188.17 MutS_II Domain 4 136 137 65.0 8.1e-18 1 No_clan
Cotton_A_38482_CDS 299 606 299 606 PF05192.18 MutS_III Domain 1 191 191 122.9 1.8e-35 1 No_clan
Cotton_A_38482_CDS 469 566 468 566 PF05190.18 MutS_IV Domain 2 92 92 63.2 2.1e-17 1 No_clan
Cotton_A_38482_CDS 662 861 662 861 PF00488.21 MutS_V Domain 1 188 188 272.8 1.7e-81 1 CL0023
Cotton_A_03602_CDS 231 356 231 356 PF12397.8 U3snoRNP10 Family 1 116 116 76.8 1.6e-21 1 No_clan
Cotton_A_03602_CDS 1861 2025 1857 2026 PF08146.12 BP28CT Domain 5 156 158 147.0 3.9e-43 1 No_clan
Cotton_A_15687_CDS 8 380 3 392 PF02458.15 Transferase Family 6 391 434 228.2 1.5e-67 1 CL0149
Cotton_A_14048_CDS 8 41 6 43 PF02736.19 Myosin_N Domain 3 36 40 25.5 8.4e-06 1 CL0010
Cotton_A_14048_CDS 62 714 62 714 PF00063.21 Myosin_head Domain 1 677 677 820.0 1.4e-246 1 CL0023
Cotton_A_14048_CDS 754 770 753 772 PF00612.27 IQ Motif 2 18 21 17.2 0.0031 1 CL0220
Cotton_A_14048_CDS 779 797 778 798 PF00612.27 IQ Motif 2 20 21 14.3 0.025 1 CL0220
Cotton_A_14048_CDS 802 820 801 821 PF00612.27 IQ Motif 2 20 21 15.0 0.016 1 CL0220
Cotton_A_14048_CDS 826 845 826 846 PF00612.27 IQ Motif 1 20 21 11.8 0.17 1 CL0220
Cotton_A_14048_CDS 1332 1435 1331 1436 PF01843.19 DIL Family 2 103 104 77.6 7.5e-22 1 No_clan
Cotton_A_09177_CDS 77 101 77 102 PF00642.24 zf-CCCH Family 1 26 27 25.8 7.3e-06 1 CL0537
Cotton_A_09177_CDS 154 176 154 176 PF18044.1 zf-CCCH_4 Domain 1 22 22 31.1 1.4e-07 1 CL0537
Cotton_A_09177_CDS 219 244 219 245 PF00642.24 zf-CCCH Family 1 26 27 41.2 1e-10 1 CL0537
Cotton_A_28586_CDS 73 178 73 178 PF03912.14 Psb28 Family 1 106 106 146.8 2.3e-43 1 No_clan
Cotton_A_32816_CDS 2 150 1 152 PF04413.16 Glycos_transf_N Domain 30 176 178 136.2 8.7e-40 1 CL0113
Cotton_A_03906_CDS 14 65 13 65 PF00010.26 HLH Domain 2 53 53 33.3 3.5e-08 1 No_clan
Cotton_A_25130_CDS 168 455 168 455 PF06814.13 Lung_7-TM_R Family 1 295 295 334.3 6.1e-100 1 CL0192
Cotton_A_04471_CDS 78 174 75 175 PF00153.27 Mito_carr Family 4 96 97 81.3 3.5e-23 1 No_clan
Cotton_A_04471_CDS 181 274 180 277 PF00153.27 Mito_carr Family 2 92 97 83.7 6.6e-24 1 No_clan
Cotton_A_04471_CDS 283 371 281 373 PF00153.27 Mito_carr Family 4 95 97 58.9 3.5e-16 1 No_clan
Cotton_A_22020_CDS 4 210 4 255 PF00069.25 Pkinase Domain 1 203 264 152.2 1.7e-44 1 CL0016
Cotton_A_13379_CDS 56 90 54 101 PF01844.23 HNH Family 4 36 47 22.3 0.00011 1 CL0263
Cotton_A_13495_CDS 12 54 3 54 PF05922.16 Inhibitor_I9 Domain 40 82 82 42.8 6.3e-11 1 CL0570
Cotton_A_13495_CDS 75 525 74 525 PF00082.22 Peptidase_S8 Domain 2 298 298 153.0 1.1e-44 1 No_clan
Cotton_A_13495_CDS 580 675 580 676 PF17766.1 fn3_6 Domain 1 98 99 93.2 8.6e-27 1 CL0159
Cotton_A_21157_CDS 41 127 39 141 PF00168.30 C2 Domain 3 94 103 45.7 6.3e-12 1 CL0154
Cotton_A_21157_CDS 198 303 198 304 PF00168.30 C2 Domain 1 102 103 64.0 1.2e-17 1 CL0154
Cotton_A_21157_CDS 359 470 359 470 PF00168.30 C2 Domain 1 103 103 75.2 4e-21 1 CL0154
Cotton_A_21157_CDS 615 770 615 770 PF08372.10 PRT_C Family 1 156 156 220.5 8.6e-66 1 CL0484
Cotton_A_37036_CDS 113 156 112 156 PF13639.6 zf-RING_2 Domain 2 44 44 50.3 2.1e-13 1 CL0229
Cotton_A_19834_CDS 5 177 5 177 PF00025.21 Arf Domain 1 175 175 267.4 3.9e-80 1 CL0023
Cotton_A_18077_CDS 109 413 109 416 PF01546.28 Peptidase_M20 Family 1 204 207 113.5 1.1e-32 1 CL0035
Cotton_A_18077_CDS 216 310 207 314 PF07687.14 M20_dimer Domain 9 105 109 44.0 1.7e-11 1 No_clan
Cotton_A_27174_CDS 44 188 41 193 PF04043.15 PMEI Domain 4 154 154 80.4 1.8e-22 1 No_clan
Cotton_A_27174_CDS 242 539 242 540 PF01095.19 Pectinesterase Family 1 297 298 426.9 2.6e-128 1 CL0268
Cotton_A_01106_CDS 148 252 148 274 PF03109.16 ABC1 Family 1 107 119 100.1 8.6e-29 1 CL0016
Cotton_A_01106_CDS 280 340 272 363 PF06176.11 WaaY Family 118 171 229 21.0 0.00021 1 CL0016
Cotton_A_01106_CDS 520 788 519 814 PF00144.24 Beta-lactamase Domain 2 238 330 150.6 6.3e-44 1 CL0013
Cotton_A_20536_CDS 3 120 1 138 PF03140.15 DUF247 Family 251 368 397 116.8 1.3e-33 1 No_clan
Cotton_A_13198_CDS 16 143 16 143 PF02365.15 NAM Family 1 126 126 120.2 9.7e-35 1 No_clan
Cotton_A_08028_CDS 10 140 6 141 PF02765.17 POT1 Domain 5 142 143 93.6 9.7e-27 1 CL0021
Cotton_A_32888_CDS 401 444 397 445 PF13041.6 PPR_2 Repeat 6 49 50 43.6 2.5e-11 1 CL0020
Cotton_A_19704_CDS 14 315 13 315 PF05653.14 Mg_trans_NIPA Family 2 295 295 428.0 1.6e-128 1 CL0184
Cotton_A_13518_CDS 48 252 48 252 PF09778.9 Guanylate_cyc_2 Family 1 212 212 248.5 4.2e-74 1 CL0125
Cotton_A_07637_CDS 83 211 83 211 PF02670.16 DXP_reductoisom Family 1 129 129 159.7 5.4e-47 1 CL0063
Cotton_A_07637_CDS 225 308 225 308 PF08436.12 DXP_redisom_C Domain 1 84 84 130.2 2.4e-38 1 CL0139
Cotton_A_07637_CDS 340 461 340 462 PF13288.6 DXPR_C Domain 1 114 115 126.8 4.5e-37 1 CL0063
Cotton_A_05031_CDS 88 219 87 221 PF08240.12 ADH_N Domain 2 107 109 98.1 2.5e-28 1 CL0296
Cotton_A_05031_CDS 263 393 263 395 PF00107.26 ADH_zinc_N Family 1 128 130 114.6 2.9e-33 1 CL0063
Cotton_A_38360_CDS 50 316 47 316 PF07714.17 Pkinase_Tyr Domain 4 259 259 144.8 2.9e-42 1 CL0016
Cotton_A_40185_CDS 163 208 163 208 PF01476.20 LysM Domain 1 44 44 37.6 1.7e-09 1 CL0187
Cotton_A_40185_CDS 297 567 296 569 PF00069.25 Pkinase Domain 2 257 264 170.7 3.7e-50 1 CL0016
Cotton_A_23306_CDS 54 114 53 115 PF05498.11 RALF Family 2 64 65 104.6 3.9e-30 1 No_clan
Cotton_A_39750_CDS 233 293 231 294 PF00536.30 SAM_1 Domain 3 63 64 59.5 3.3e-16 1 CL0003
Cotton_A_17192_CDS 183 267 183 268 PF00439.25 Bromodomain Domain 1 83 84 75.3 2.8e-21 1 No_clan
Cotton_A_17192_CDS 395 457 395 458 PF17035.5 BET Domain 1 63 64 83.4 9.3e-24 1 CL0665
Cotton_A_33595_CDS 35 334 34 377 PF01425.21 Amidase Family 2 287 451 178.5 2.2e-52 1 No_clan
Cotton_A_39968_CDS 9 92 9 113 PF14226.6 DIOX_N Family 1 82 118 37.1 4.4e-09 1 CL0029
Cotton_A_39968_CDS 170 258 159 259 PF03171.20 2OG-FeII_Oxy Domain 10 100 101 68.5 5.6e-19 1 CL0029
Cotton_A_04358_CDS 83 189 81 191 PF00651.31 BTB Domain 3 109 111 29.7 5.9e-07 1 CL0033
Cotton_A_04358_CDS 276 360 274 360 PF02135.16 zf-TAZ Family 3 75 75 55.1 7.6e-15 1 No_clan
Cotton_A_20904_CDS 113 134 111 134 PF13516.6 LRR_6 Repeat 3 23 24 10.6 0.49 1 CL0022
Cotton_A_20904_CDS 299 319 297 320 PF13516.6 LRR_6 Repeat 3 23 24 10.5 0.51 1 CL0022
Cotton_A_33690_CDS 84 397 84 397 PF00225.23 Kinesin Domain 1 333 333 345.3 2.9e-103 1 CL0023
Cotton_A_11781_CDS 132 171 129 171 PF13259.6 DUF4050 Family 144 183 183 55.2 1e-14 1 No_clan
Cotton_A_28858_CDS 148 306 148 307 PF00484.19 Pro_CA Domain 1 155 156 140.3 6.2e-41 1 No_clan
Cotton_A_09360_CDS 50 294 50 294 PF00956.18 NAP Family 1 270 270 287.2 1e-85 1 No_clan
Cotton_A_11715_CDS 63 604 63 607 PF07058.11 MAP70 Family 1 550 554 969.0 7.6e-292 1 No_clan
Cotton_A_14045_CDS 56 198 56 198 PF01565.23 FAD_binding_4 Domain 1 139 139 86.8 1.1e-24 1 CL0077
Cotton_A_14045_CDS 230 506 230 506 PF09265.10 Cytokin-bind Domain 1 281 281 352.0 2.3e-105 1 CL0277
Cotton_A_35391_CDS 39 100 20 100 PF12796.7 Ank_2 Repeat 28 83 83 33.4 5.2e-08 1 CL0465
Cotton_A_35391_CDS 164 418 161 418 PF07714.17 Pkinase_Tyr Domain 4 259 259 209.3 5.7e-62 1 CL0016
Cotton_A_41299_CDS 159 187 155 187 PF06200.14 tify Domain 6 34 34 49.2 2.3e-13 1 No_clan
Cotton_A_41299_CDS 261 278 261 286 PF09425.10 CCT_2 Motif 1 18 26 30.9 1.8e-07 1 CL0281
Cotton_A_15372_CDS 111 533 111 533 PF00310.21 GATase_2 Domain 1 420 420 580.3 2e-174 1 CL0052
Cotton_A_15372_CDS 559 852 559 853 PF04898.14 Glu_syn_central Domain 1 278 279 355.1 2.8e-106 1 CL0036
Cotton_A_15372_CDS 911 1295 911 1296 PF01645.17 Glu_synthase Domain 1 367 368 534.0 1.9e-160 1 CL0036
Cotton_A_15372_CDS 1377 1559 1376 1563 PF01493.19 GXGXG Family 2 185 190 253.5 1e-75 1 No_clan
Cotton_A_27693_CDS 154 182 153 188 PF00005.27 ABC_tran Domain 2 30 137 25.1 2e-05 1 CL0023
Cotton_A_24572_CDS 65 328 64 329 PF00154.21 RecA Family 2 262 263 306.0 2.2e-91 1 CL0023
Cotton_A_16661_CDS 4 325 4 325 PF01112.18 Asparaginase_2 Domain 1 306 306 368.2 2.7e-110 1 CL0052
Cotton_A_21686_CDS 7 251 7 251 PF00149.28 Metallophos Domain 1 204 204 55.0 1.5e-14 1 CL0163
Cotton_A_21686_CDS 296 448 296 448 PF04152.14 Mre11_DNA_bind Domain 1 169 169 120.4 9.5e-35 1 No_clan
Cotton_A_03102_CDS 1 126 1 126 PF12590.8 Acyl-thio_N Family 1 131 131 187.8 1.1e-55 1 No_clan
Cotton_A_03102_CDS 137 395 137 396 PF01643.17 Acyl-ACP_TE Family 1 247 248 277.1 1.1e-82 1 CL0050
Cotton_A_03421_CDS 9 314 9 315 PF01156.19 IU_nuc_hydro Domain 1 304 305 277.8 1.3e-82 1 No_clan
Cotton_A_12732_CDS 188 400 120 406 PF00282.19 Pyridoxal_deC Domain 147 367 375 76.2 2e-21 1 CL0061
Cotton_A_12458_CDS 5 141 5 142 PF00179.26 UQ_con Domain 1 139 140 179.5 2.4e-53 1 CL0208
Cotton_A_21512_CDS 6 91 1 105 PF00931.22 NB-ARC Domain 151 240 252 42.2 5.4e-11 1 CL0023
Cotton_A_21512_CDS 309 363 308 365 PF13855.6 LRR_8 Repeat 2 56 61 29.9 3.4e-07 1 CL0022
Cotton_A_01798_CDS 231 258 230 260 PF01535.20 PPR Family 2 29 31 11.4 0.31 1 CL0020
Cotton_A_01798_CDS 269 298 268 298 PF01535.20 PPR Family 2 31 31 22.4 9.6e-05 1 CL0020
Cotton_A_01798_CDS 401 434 401 434 PF12854.7 PPR_1 Repeat 1 34 34 32.8 4e-08 1 CL0020
Cotton_A_01798_CDS 443 473 443 473 PF01535.20 PPR Family 1 31 31 29.6 4.9e-07 1 CL0020
Cotton_A_01798_CDS 475 522 475 524 PF13041.6 PPR_2 Repeat 1 48 50 45.5 6.5e-12 1 CL0020
Cotton_A_23374_CDS 27 343 27 344 PF00332.18 Glyco_hydro_17 Domain 1 310 313 253.8 2.7e-75 1 CL0058
Cotton_A_37290_CDS 285 315 278 316 PF00400.32 WD40 Repeat 8 37 38 14.3 0.057 1 CL0186
Cotton_A_37290_CDS 325 364 323 364 PF00400.32 WD40 Repeat 3 38 38 22.6 0.00014 1 CL0186
Cotton_A_37290_CDS 418 453 415 453 PF00400.32 WD40 Repeat 4 38 38 19.3 0.0016 1 CL0186
Cotton_A_28959_CDS 7 91 6 93 PF03083.16 MtN3_slv Family 2 85 87 75.9 1.9e-21 1 CL0141
Cotton_A_11827_CDS 9 87 9 119 PF14226.6 DIOX_N Family 1 76 118 32.7 1e-07 1 CL0029
Cotton_A_31855_CDS 2 62 1 63 PF00838.17 TCTP Domain 34 93 166 59.0 7e-16 1 CL0080
Cotton_A_11738_CDS 264 401 243 414 PF00201.18 UDPGT Family 258 380 499 55.0 6e-15 1 CL0113
Cotton_A_13227_CDS 39 95 38 96 PF02701.15 zf-Dof Family 2 58 59 114.3 2e-33 1 No_clan
Cotton_A_14544_CDS 11 92 11 92 PF01198.19 Ribosomal_L31e Family 1 82 82 144.2 1e-42 1 No_clan
Cotton_A_32436_CDS 3 404 1 417 PF00067.22 p450 Domain 7 438 463 233.4 4.6e-69 1 No_clan
Cotton_A_21198_CDS 12 173 12 174 PF00071.22 Ras Domain 1 161 162 202.6 2.8e-60 1 CL0023
Cotton_A_20287_CDS 212 632 212 633 PF01964.18 ThiC_Rad_SAM Domain 1 417 418 654.1 7.8e-197 1 CL0036
Cotton_A_10829_CDS 8 121 8 121 PF16906.5 Ribosomal_L26 Family 1 82 82 130.7 2e-38 1 No_clan
Cotton_A_10829_CDS 51 82 51 82 PF00467.29 KOW Family 1 32 32 36.6 2.8e-09 1 CL0107
Cotton_A_30827_CDS 223 383 223 383 PF02182.17 SAD_SRA Domain 1 157 157 164.4 1.5e-48 1 CL0178
Cotton_A_30827_CDS 414 521 413 521 PF05033.16 Pre-SET Family 2 109 109 58.2 1.1e-15 1 No_clan
Cotton_A_30827_CDS 540 679 540 679 PF00856.28 SET Family 1 169 169 69.0 6.3e-19 1 No_clan
Cotton_A_14561_CDS 43 94 42 95 PF13833.6 EF-hand_8 Domain 2 54 55 65.3 3.3e-18 1 CL0220
Cotton_A_01515_CDS 63 211 45 212 PF09348.10 DUF1990 Domain 11 152 153 148.7 1.3e-43 1 No_clan
Cotton_A_38086_CDS 175 581 170 582 PF01425.21 Amidase Family 21 450 451 283.0 4.5e-84 1 No_clan
Cotton_A_19812_CDS 61 142 60 151 PF00025.21 Arf Domain 2 83 175 105.5 2.1e-30 1 CL0023
Cotton_A_19812_CDS 277 385 268 385 PF00025.21 Arf Domain 78 175 175 94.2 5.8e-27 1 CL0023
Cotton_A_11043_CDS 4 196 1 198 PF01174.19 SNO Domain 23 186 188 145.0 2.3e-42 1 CL0014
Cotton_A_07609_CDS 9 609 9 609 PF03547.18 Mem_trans Family 1 387 387 653.3 8e-197 1 CL0064
Cotton_A_36272_CDS 314 410 314 415 PF06241.12 Castor_Poll_mid Family 1 99 104 130.0 2.8e-38 1 CL0582
Cotton_A_12234_CDS 97 135 96 136 PF00514.23 Arm Repeat 2 40 41 27.0 3.2e-06 1 CL0020
Cotton_A_16185_CDS 35 361 35 361 PF00657.22 Lipase_GDSL Family 1 200 200 95.1 5.2e-27 1 CL0264
Cotton_A_21772_CDS 98 184 97 195 PF01490.18 Aa_trans Family 2 88 409 43.4 1.8e-11 1 CL0062
Cotton_A_21772_CDS 188 485 183 486 PF01490.18 Aa_trans Family 113 408 409 137.4 5.1e-40 1 CL0062
Cotton_A_12218_CDS 11 89 3 99 PF14368.6 LTP_2 Family 18 91 97 30.0 4e-07 1 CL0482
Cotton_A_34960_CDS 153 360 150 360 PF01061.24 ABC2_membrane Family 4 210 210 139.4 1.1e-40 1 CL0181
Cotton_A_18256_CDS 43 102 43 102 PF02704.14 GASA Family 1 60 60 76.8 1e-21 1 No_clan
Cotton_A_04919_CDS 174 217 172 220 PF13041.6 PPR_2 Repeat 3 46 50 43.7 2.4e-11 1 CL0020
Cotton_A_04919_CDS 255 401 251 403 PF17177.4 PPR_long Domain 22 177 212 48.8 5.5e-13 1 CL0020
Cotton_A_04919_CDS 422 451 421 451 PF01535.20 PPR Family 2 31 31 24.1 2.7e-05 1 CL0020
Cotton_A_04919_CDS 458 486 456 486 PF01535.20 PPR Family 3 31 31 13.5 0.066 1 CL0020
Cotton_A_26060_CDS 169 205 169 206 PF06203.14 CCT Motif 1 37 44 51.1 1e-13 1 CL0281
Cotton_A_11120_CDS 93 382 93 382 PF08392.12 FAE1_CUT1_RppA Family 1 290 290 476.6 2.7e-143 1 CL0046
Cotton_A_11120_CDS 399 479 396 480 PF08541.10 ACP_syn_III_C Domain 12 89 90 38.5 9.7e-10 1 CL0046
Cotton_A_10391_CDS 56 296 55 298 PF00141.23 peroxidase Domain 2 227 229 246.3 2.9e-73 1 CL0617
Cotton_A_06673_CDS 2 64 1 64 PF07173.12 GRDP-like Family 80 142 142 93.7 1.5e-26 1 No_clan
Cotton_A_22445_CDS 10 246 9 288 PF00069.25 Pkinase Domain 2 213 264 83.3 1.7e-23 1 CL0016
Cotton_A_35274_CDS 294 450 293 450 PF13359.6 DDE_Tnp_4 Domain 2 158 158 123.7 5.3e-36 1 CL0219
Cotton_A_01245_CDS 8 97 8 101 PF02214.22 BTB_2 Domain 1 89 94 59.7 2.7e-16 1 CL0033
Cotton_A_28542_CDS 62 123 61 123 PF05498.11 RALF Family 2 65 65 100.2 9.3e-29 1 No_clan
Cotton_A_07984_CDS 53 428 53 429 PF07712.12 SURNod19 Domain 1 376 377 630.6 6.9e-190 1 No_clan
Cotton_A_26417_CDS 8 276 1 278 PF00676.20 E1_dh Family 10 297 300 146.3 9e-43 1 CL0254
Cotton_A_17616_CDS 99 282 99 282 PF01214.18 CK_II_beta Domain 1 182 182 268.2 3.3e-80 1 No_clan
Cotton_A_29618_CDS 47 186 47 191 PF01936.18 NYN Domain 1 140 147 99.7 2.1e-28 1 CL0280
Cotton_A_29618_CDS 315 379 311 380 PF12872.7 OST-HTH Domain 6 71 72 30.9 1.8e-07 1 CL0123
Cotton_A_29618_CDS 456 519 454 524 PF12872.7 OST-HTH Domain 3 67 72 31.1 1.5e-07 1 CL0123
Cotton_A_40628_CDS 3 70 3 78 PF13650.6 Asp_protease_2 Domain 1 68 90 39.1 8.7e-10 1 CL0129
Cotton_A_40628_CDS 127 284 125 285 PF00078.27 RVT_1 Family 3 221 222 114.5 4.9e-33 1 CL0027
Cotton_A_11516_CDS 305 337 304 337 PF06200.14 tify Domain 2 34 34 54.5 5e-15 1 No_clan
Cotton_A_17820_CDS 22 183 21 185 PF02536.14 mTERF Family 2 166 314 69.2 2.9e-19 1 No_clan
Cotton_A_17820_CDS 127 293 116 294 PF02536.14 mTERF Family 148 313 314 60.6 1.2e-16 1 No_clan
Cotton_A_05900_CDS 57 97 57 140 PF04674.12 Phi_1 Family 1 41 276 37.8 1.3e-09 1 No_clan
Cotton_A_34914_CDS 188 239 187 240 PF14416.6 PMR5N Domain 2 52 53 75.8 2.4e-21 1 No_clan
Cotton_A_34914_CDS 241 529 241 530 PF13839.6 PC-Esterase Family 1 282 283 332.2 3.4e-99 1 CL0264
Cotton_A_38327_CDS 444 703 440 706 PF00069.25 Pkinase Domain 5 259 264 66.3 2.6e-18 1 CL0016
Cotton_A_31179_CDS 152 198 151 199 PF03107.16 C1_2 Domain 2 46 47 26.2 7.2e-06 1 CL0006
Cotton_A_31179_CDS 269 315 268 315 PF03107.16 C1_2 Domain 2 47 47 36.1 5.8e-09 1 CL0006
Cotton_A_31179_CDS 438 780 438 782 PF13968.6 DUF4220 Family 1 346 347 296.3 3.6e-88 1 No_clan
Cotton_A_31179_CDS 1042 1093 1040 1093 PF04578.13 DUF594 Family 4 55 55 80.0 6.8e-23 1 No_clan
Cotton_A_22172_CDS 137 185 134 196 PF00170.21 bZIP_1 Family 5 53 64 49.5 3.3e-13 1 CL0018
Cotton_A_15390_CDS 153 289 153 290 PF01565.23 FAD_binding_4 Domain 1 138 139 127.7 2.5e-37 1 CL0077
Cotton_A_15390_CDS 326 567 326 567 PF02913.19 FAD-oxidase_C Domain 1 250 250 227.6 1.8e-67 1 CL0277
Cotton_A_35254_CDS 3 186 2 191 PF03721.14 UDPG_MGDP_dh_N Domain 2 183 187 224.6 6.9e-67 1 CL0063
Cotton_A_35254_CDS 210 304 210 305 PF00984.19 UDPG_MGDP_dh Domain 1 93 94 110.7 3e-32 1 CL0106
Cotton_A_35254_CDS 328 451 328 452 PF03720.15 UDPG_MGDP_dh_C Domain 1 104 105 118.8 1.3e-34 1 CL0039
Cotton_A_02069_CDS 17 199 17 205 PF01595.20 DUF21 Domain 1 170 176 111.7 3e-32 1 No_clan
Cotton_A_30344_CDS 1 333 1 333 PF03105.19 SPX Domain 1 384 384 258.4 2.1e-76 1 No_clan
Cotton_A_30344_CDS 422 758 422 758 PF03124.14 EXS Family 1 331 331 296.6 2.6e-88 1 CL0182
Cotton_A_20910_CDS 28 411 27 420 PF01490.18 Aa_trans Family 2 402 409 183.6 4.8e-54 1 CL0062
Cotton_A_20464_CDS 2 73 1 79 PF07993.12 NAD_binding_4 Family 85 156 257 67.6 9.1e-19 1 CL0063
Cotton_A_17730_CDS 138 212 137 212 PF04969.16 CS Domain 2 76 76 70.3 2.1e-19 1 CL0190
Cotton_A_27705_CDS 4 137 4 139 PF00334.19 NDK Domain 1 133 135 181.2 8.6e-54 1 No_clan
Cotton_A_11917_CDS 9 171 7 173 PF06364.12 DUF1068 Family 3 166 168 245.0 3.5e-73 1 No_clan
Cotton_A_11151_CDS 12 171 12 173 PF00071.22 Ras Domain 1 160 162 202.0 4.2e-60 1 CL0023
Cotton_A_37831_CDS 10 57 10 57 PF00319.18 SRF-TF Domain 1 48 48 84.8 2e-24 1 No_clan
Cotton_A_37831_CDS 94 171 87 172 PF01486.17 K-box Family 15 92 93 56.4 2.6e-15 1 No_clan
Cotton_A_31191_CDS 184 240 182 240 PF13855.6 LRR_8 Repeat 3 60 61 50.0 1.8e-13 1 CL0022
Cotton_A_33344_CDS 3 93 3 94 PF05460.13 ORC6 Family 1 89 357 59.3 3.8e-16 1 No_clan
Cotton_A_31104_CDS 38 117 38 124 PF03492.15 Methyltransf_7 Family 1 81 334 92.4 3.1e-26 1 CL0063
Cotton_A_16167_CDS 41 155 13 167 PF13563.6 2_5_RNA_ligase2 Family 25 137 152 44.6 1.4e-11 1 CL0247
Cotton_A_13346_CDS 30 121 27 123 PF00153.27 Mito_carr Family 4 95 97 77.0 8e-22 1 No_clan
Cotton_A_13346_CDS 129 237 127 239 PF00153.27 Mito_carr Family 5 95 97 67.6 6.7e-19 1 No_clan
Cotton_A_13346_CDS 252 339 249 340 PF00153.27 Mito_carr Family 6 96 97 90.3 5.6e-26 1 No_clan
Cotton_A_16637_CDS 18 230 18 230 PF00314.17 Thaumatin Domain 1 214 214 270.0 1.4e-80 1 CL0293
Cotton_A_40413_CDS 43 88 30 91 PF03732.17 Retrotrans_gag Family 17 63 96 24.1 3.2e-05 1 CL0523
Cotton_A_29663_CDS 43 170 41 170 PF08240.12 ADH_N Domain 3 109 109 82.3 2.1e-23 1 CL0296
Cotton_A_29663_CDS 213 335 212 349 PF00107.26 ADH_zinc_N Family 2 118 130 87.9 5.3e-25 1 CL0063
Cotton_A_17295_CDS 97 321 97 351 PF11935.8 DUF3453 Family 1 221 226 157.2 4.7e-46 1 No_clan
Cotton_A_17295_CDS 1098 1276 1098 1277 PF12295.8 Symplekin_C Family 1 185 186 203.0 4.2e-60 1 No_clan
Cotton_A_07771_CDS 147 196 145 196 PF00249.31 Myb_DNA-binding Domain 3 46 46 30.5 3.1e-07 1 CL0123
Cotton_A_07771_CDS 225 271 224 271 PF14379.6 Myb_CC_LHEQLE Family 2 48 48 68.4 3.1e-19 1 No_clan
Cotton_A_26179_CDS 51 148 51 149 PF03195.14 LOB Family 1 98 99 138.5 8.6e-41 1 No_clan
Cotton_A_19302_CDS 19 183 18 192 PF01582.20 TIR Family 2 164 176 129.8 9.4e-38 1 CL0173
Cotton_A_19302_CDS 195 424 193 443 PF00931.22 NB-ARC Domain 3 229 252 111.0 5.4e-32 1 CL0023
Cotton_A_11840_CDS 178 264 177 265 PF13837.6 Myb_DNA-bind_4 Domain 3 89 90 76.9 1.1e-21 1 CL0123
Cotton_A_33959_CDS 127 261 126 263 PF04819.12 DUF716 Family 2 136 138 136.1 6.1e-40 1 No_clan
Cotton_A_09083_CDS 88 322 88 323 PF02485.21 Branch Family 1 246 247 216.9 3e-64 1 CL0110
Cotton_A_02613_CDS 18 680 18 681 PF09786.9 CytochromB561_N Family 1 569 570 752.7 3.5e-226 1 No_clan
Cotton_A_17653_CDS 42 68 42 68 PF08513.11 LisH Domain 1 27 27 36.1 3.9e-09 1 CL0561
Cotton_A_17653_CDS 78 220 77 221 PF10607.9 CLTH Domain 2 147 148 129.2 1.1e-37 1 No_clan
Cotton_A_10684_CDS 133 351 133 351 PF07816.11 DUF1645 Family 1 191 191 172.7 1.3e-50 1 No_clan
Cotton_A_06429_CDS 3 137 1 142 PF00106.25 adh_short Domain 55 189 195 125.1 2.3e-36 1 CL0063
Cotton_A_36366_CDS 26 88 26 89 PF07516.13 SecA_SW Family 1 63 199 59.6 4.3e-16 1 No_clan
Cotton_A_38157_CDS 189 253 186 270 PF09409.10 PUB Domain 8 72 82 56.7 1.7e-15 1 No_clan
Cotton_A_38157_CDS 356 404 353 433 PF00789.20 UBX Domain 4 52 81 24.8 1.9e-05 1 CL0072
Cotton_A_30222_CDS 40 215 39 229 PF01145.25 Band_7 Family 2 177 178 87.3 1.2e-24 1 CL0433
Cotton_A_02098_CDS 35 588 35 589 PF00995.23 Sec1 Family 1 562 575 343.4 3.7e-102 1 No_clan
Cotton_A_23551_CDS 60 86 60 86 PF01535.20 PPR Family 5 31 31 14.8 0.026 1 CL0020
Cotton_A_23551_CDS 94 122 93 122 PF13041.6 PPR_2 Repeat 12 40 50 33.2 4.3e-08 1 CL0020
Cotton_A_23151_CDS 108 198 107 205 PF01453.24 B_lectin Domain 3 98 105 73.3 2e-20 1 No_clan
Cotton_A_23151_CDS 245 361 244 364 PF00954.20 S_locus_glycop Domain 2 106 111 24.1 4e-05 1 No_clan
Cotton_A_12660_CDS 35 104 35 104 PF00505.19 HMG_box Domain 1 69 69 82.3 2.4e-23 1 CL0114
Cotton_A_19156_CDS 341 411 341 411 PF04542.14 Sigma70_r2 Domain 1 71 71 66.2 1.6e-18 1 CL0123
Cotton_A_19156_CDS 420 495 420 497 PF04539.16 Sigma70_r3 Family 1 76 78 63.5 1.5e-17 1 CL0123
Cotton_A_19156_CDS 509 561 509 562 PF04545.16 Sigma70_r4 Domain 1 49 50 68.0 3.8e-19 1 CL0123
Cotton_A_07574_CDS 263 365 259 370 PF08616.10 SPA Family 5 106 114 33.3 3.6e-08 1 CL0330
Cotton_A_04620_CDS 221 402 220 409 PF05691.12 Raffinose_syn Family 194 378 750 191.6 1.6e-56 1 CL0058
Cotton_A_04620_CDS 412 563 412 567 PF00071.22 Ras Domain 1 152 162 198.9 3.9e-59 1 CL0023
Cotton_A_34946_CDS 43 85 43 85 PF16711.5 SCAB-ABD Domain 1 43 43 43.9 1.6e-11 1 No_clan
Cotton_A_34946_CDS 90 135 89 135 PF16712.5 SCAB_CC Family 2 47 168 42.9 4.5e-11 1 No_clan
Cotton_A_14773_CDS 91 149 41 150 PF12894.7 ANAPC4_WD40 Repeat 33 91 92 26.1 7.8e-06 1 CL0186
Cotton_A_04387_CDS 3 159 1 159 PF07468.11 Agglutinin Domain 3 153 153 71.8 7.1e-20 1 CL0066
Cotton_A_04387_CDS 169 263 164 270 PF07468.11 Agglutinin Domain 7 114 153 34.8 1.7e-08 1 CL0066
Cotton_A_13072_CDS 166 233 163 233 PF08234.12 Spindle_Spc25 Family 4 73 73 70.2 1.3e-19 1 No_clan
Cotton_A_32913_CDS 8 178 8 179 PF00071.22 Ras Domain 1 161 162 173.0 3.6e-51 1 CL0023
Cotton_A_06013_CDS 105 264 105 265 PF01210.23 NAD_Gly3P_dh_N Family 1 156 157 142.6 9.9e-42 1 CL0063
Cotton_A_06013_CDS 284 424 284 425 PF07479.14 NAD_Gly3P_dh_C Domain 1 141 142 158.7 1.1e-46 1 CL0106
Cotton_A_14721_CDS 25 53 24 54 PF01535.20 PPR Family 2 30 31 33.0 4e-08 1 CL0020
Cotton_A_14721_CDS 55 83 55 85 PF01535.20 PPR Family 1 29 31 30.3 2.8e-07 1 CL0020
Cotton_A_14721_CDS 119 151 118 151 PF12854.7 PPR_1 Repeat 2 34 34 32.4 5.3e-08 1 CL0020
Cotton_A_14721_CDS 184 232 184 233 PF13041.6 PPR_2 Repeat 1 49 50 45.9 4.8e-12 1 CL0020
Cotton_A_14721_CDS 258 284 256 286 PF12854.7 PPR_1 Repeat 6 32 34 26.4 4.2e-06 1 CL0020
Cotton_A_14721_CDS 288 335 288 337 PF13041.6 PPR_2 Repeat 1 48 50 38.3 1.1e-09 1 CL0020
Cotton_A_14721_CDS 364 385 362 387 PF01535.20 PPR Family 3 24 31 9.3 1.4 1 CL0020
Cotton_A_00188_CDS 16 168 16 168 PF08617.10 CGI-121 Domain 1 162 162 123.7 7.5e-36 1 No_clan
Cotton_A_39022_CDS 8 53 7 59 PF08325.10 WLM Domain 2 47 191 51.8 1e-13 1 CL0126
Cotton_A_20037_CDS 9 235 7 238 PF13561.6 adh_short_C2 Domain 3 225 234 159.5 9.8e-47 1 CL0063
Cotton_A_20037_CDS 257 483 255 483 PF13561.6 adh_short_C2 Domain 3 234 234 155.0 2.3e-45 1 CL0063
Cotton_A_22909_CDS 31 465 31 465 PF01490.18 Aa_trans Family 1 409 409 385.4 2.7e-115 1 CL0062
Cotton_A_00129_CDS 72 418 71 428 PF09790.9 Hyccin Family 2 299 321 238.8 7.6e-71 1 No_clan
Cotton_A_16915_CDS 141 261 141 261 PF07227.11 PHD_Oberon Family 1 130 130 123.9 3.6e-36 1 CL0390
Cotton_A_16915_CDS 341 420 340 424 PF00041.21 fn3 Domain 2 79 85 26.6 5.7e-06 1 CL0159
Cotton_A_06771_CDS 23 203 22 203 PF00722.21 Glyco_hydro_16 Domain 2 177 177 205.2 5.2e-61 1 CL0004
Cotton_A_06771_CDS 233 277 231 277 PF06955.12 XET_C Family 2 47 47 78.0 3.3e-22 1 CL0004
Cotton_A_32408_CDS 93 239 92 240 PF05142.12 DUF702 Family 2 149 150 227.9 6.4e-68 1 No_clan
Cotton_A_35064_CDS 71 396 68 398 PF00520.31 Ion_trans Family 4 243 245 110.4 8.1e-32 1 CL0030
Cotton_A_35064_CDS 492 580 490 585 PF00027.29 cNMP_binding Domain 6 84 89 34.2 1.9e-08 1 CL0029
Cotton_A_40013_CDS 110 156 108 200 PF13847.6 Methyltransf_31 Domain 3 50 152 28.0 1.6e-06 1 CL0063
Cotton_A_40013_CDS 722 1066 696 1069 PF00155.21 Aminotran_1_2 Domain 49 360 363 52.5 4.3e-14 1 CL0061
Cotton_A_01302_CDS 26 376 22 378 PF03283.13 PAE Family 5 353 355 531.2 1.2e-159 1 CL0028
Cotton_A_39631_CDS 8 35 4 35 PF01066.21 CDP-OH_P_transf Family 39 66 66 32.0 1.5e-07 1 No_clan
Cotton_A_28575_CDS 353 560 350 619 PF00069.25 Pkinase Domain 4 207 264 143.6 6.9e-42 1 CL0016
Cotton_A_00779_CDS 48 74 48 74 PF15803.5 zf-SCNM1 Family 1 27 27 59.3 2e-16 1 No_clan
Cotton_A_00779_CDS 185 227 184 229 PF15805.5 SCNM1_acidic Family 2 44 47 71.7 2.9e-20 1 No_clan
Cotton_A_04757_CDS 67 229 67 231 PF00071.22 Ras Domain 1 160 162 71.7 4.9e-20 1 CL0023
Cotton_A_30026_CDS 3 77 3 77 PF08571.10 Yos1 Family 1 80 80 74.7 5.2e-21 1 No_clan
Cotton_A_23967_CDS 215 372 214 374 PF01764.25 Lipase_3 Family 2 140 142 138.2 1.7e-40 1 CL0028
Cotton_A_09810_CDS 27 68 26 69 PF08263.12 LRRNT_2 Family 2 40 41 33.0 5.3e-08 1 No_clan
Cotton_A_09810_CDS 145 203 144 204 PF13855.6 LRR_8 Repeat 2 60 61 33.1 3.4e-08 1 CL0022
Cotton_A_09810_CDS 242 301 241 301 PF13855.6 LRR_8 Repeat 2 61 61 34.9 9.6e-09 1 CL0022
Cotton_A_09810_CDS 528 586 527 586 PF13855.6 LRR_8 Repeat 2 61 61 32.8 4.3e-08 1 CL0022
Cotton_A_09810_CDS 686 893 682 975 PF00069.25 Pkinase Domain 5 201 264 145.7 1.6e-42 1 CL0016
Cotton_A_36354_CDS 7 252 7 253 PF06813.13 Nodulin-like Family 1 249 250 265.0 6.4e-79 1 CL0015
Cotton_A_04119_CDS 51 96 51 115 PF00685.27 Sulfotransfer_1 Domain 1 50 267 21.5 0.00013 1 CL0023
Cotton_A_16128_CDS 79 101 79 101 PF02493.20 MORN Repeat 1 23 23 20.5 0.0003 1 CL0251
Cotton_A_16128_CDS 102 123 102 124 PF02493.20 MORN Repeat 1 22 23 32.0 6.6e-08 1 CL0251
Cotton_A_16128_CDS 125 147 125 147 PF02493.20 MORN Repeat 1 23 23 20.5 0.0003 1 CL0251
Cotton_A_16128_CDS 148 169 148 170 PF02493.20 MORN Repeat 1 22 23 19.9 0.00047 1 CL0251
Cotton_A_16128_CDS 171 191 171 192 PF02493.20 MORN Repeat 1 21 23 25.3 9.1e-06 1 CL0251
Cotton_A_16128_CDS 194 216 194 216 PF02493.20 MORN Repeat 1 23 23 29.5 4.1e-07 1 CL0251
Cotton_A_16128_CDS 217 238 217 239 PF02493.20 MORN Repeat 1 22 23 24.4 1.8e-05 1 CL0251
Cotton_A_16128_CDS 447 739 445 740 PF01504.18 PIP5K Family 3 273 274 319.6 1.5e-95 1 CL0016
Cotton_A_32468_CDS 46 104 44 104 PF01471.18 PG_binding_1 Domain 4 57 57 44.4 1.4e-11 1 CL0244
Cotton_A_32468_CDS 142 296 141 297 PF00413.24 Peptidase_M10 Domain 2 157 158 160.4 3.1e-47 1 CL0126
Cotton_A_18498_CDS 358 494 357 495 PF01399.27 PCI Domain 2 104 105 77.0 1.3e-21 1 CL0123
Cotton_A_13285_CDS 16 95 14 105 PF02391.17 MoaE Family 4 83 113 85.3 3.4e-24 1 No_clan
Cotton_A_37042_CDS 1 100 1 107 PF04571.14 Lipin_N Family 1 95 102 99.8 7e-29 1 No_clan
Cotton_A_37042_CDS 488 579 487 597 PF16876.5 Lipin_mid Family 2 84 101 61.6 6.2e-17 1 No_clan
Cotton_A_37042_CDS 652 875 651 875 PF08235.13 LNS2 Domain 2 226 226 324.3 3.5e-97 1 CL0137
Cotton_A_03546_CDS 73 480 71 480 PF01603.20 B56 Family 3 415 415 597.5 1.4e-179 1 CL0020
Cotton_A_29781_CDS 33 62 33 69 PF13405.6 EF-hand_6 Domain 1 31 31 31.3 1e-07 1 CL0220
Cotton_A_29781_CDS 120 185 119 185 PF13499.6 EF-hand_7 Domain 2 71 71 52.3 5.8e-14 1 CL0220
Cotton_A_22699_CDS 677 758 676 758 PF13889.6 Chromosome_seg Family 2 55 55 85.1 2.6e-24 1 No_clan
Cotton_A_37610_CDS 17 146 16 146 PF02365.15 NAM Family 2 126 126 126.2 1.4e-36 1 No_clan
Cotton_A_02375_CDS 36 89 34 90 PF00046.29 Homeodomain Domain 3 56 57 60.0 1.4e-16 1 CL0123
Cotton_A_02375_CDS 91 132 91 133 PF02183.18 HALZ Coiled-coil 1 42 43 50.1 2.3e-13 1 No_clan
Cotton_A_39368_CDS 23 512 20 516 PF00083.24 Sugar_tr Family 3 447 452 148.2 3.2e-43 1 CL0015
Cotton_A_33093_CDS 68 156 67 156 PF02749.16 QRPTase_N Domain 2 89 89 88.1 2.9e-25 1 CL0105
Cotton_A_33093_CDS 158 339 158 339 PF01729.19 QRPTase_C Domain 1 169 169 197.3 1.5e-58 1 CL0036
Cotton_A_18996_CDS 221 307 221 333 PF02338.19 OTU Family 1 92 127 46.2 5.8e-12 1 CL0125
Cotton_A_13746_CDS 100 228 99 228 PF00692.19 dUTPase Domain 2 129 129 149.1 5.1e-44 1 CL0153
Cotton_A_20544_CDS 381 848 380 848 PF01055.26 Glyco_hydro_31 Family 3 440 440 216.6 7e-64 1 CL0058
Cotton_A_10784_CDS 8 53 2 59 PF00067.22 p450 Domain 304 349 463 27.9 9.2e-07 1 No_clan
Cotton_A_33998_CDS 13 34 1 34 PF08263.12 LRRNT_2 Family 19 41 41 30.4 3.6e-07 1 No_clan
Cotton_A_33998_CDS 114 136 114 136 PF00560.33 LRR_1 Repeat 1 23 23 12.9 0.13 1 CL0022
Cotton_A_33998_CDS 190 203 188 204 PF13516.6 LRR_6 Repeat 3 16 24 9.1 1.4 1 CL0022
Cotton_A_33998_CDS 358 416 355 416 PF13855.6 LRR_8 Repeat 4 61 61 37.4 1.6e-09 1 CL0022
Cotton_A_14457_CDS 389 567 389 568 PF00270.29 DEAD Domain 1 175 176 140.1 6.3e-41 1 CL0023
Cotton_A_14457_CDS 612 717 606 718 PF00271.31 Helicase_C Family 8 110 111 73.4 1.7e-20 1 CL0023
Cotton_A_06143_CDS 100 229 39 232 PF13419.6 HAD_2 Family 60 175 178 62.6 4.9e-17 1 CL0137
Cotton_A_28376_CDS 35 84 34 84 PF08263.12 LRRNT_2 Family 2 41 41 38.8 8.6e-10 1 No_clan
Cotton_A_28376_CDS 611 669 610 670 PF13855.6 LRR_8 Repeat 2 60 61 33.1 3.4e-08 1 CL0022
Cotton_A_38540_CDS 257 331 253 393 PF06552.12 TOM20_plant Family 6 80 187 28.8 9.2e-07 1 CL0020
Cotton_A_01619_CDS 39 63 7 63 PF03765.15 CRAL_TRIO_N Domain 30 54 54 31.4 1.6e-07 1 CL0214
Cotton_A_01619_CDS 86 237 82 237 PF00650.20 CRAL_TRIO Domain 5 159 159 121.9 2e-35 1 CL0512
Cotton_A_03500_CDS 11 193 11 194 PF13472.6 Lipase_GDSL_2 Domain 1 178 179 79.4 4.1e-22 1 CL0264
Cotton_A_14089_CDS 114 154 109 171 PF13812.6 PPR_3 Repeat 6 46 63 20.3 0.00043 1 CL0020
Cotton_A_14089_CDS 160 186 159 188 PF01535.20 PPR Family 2 28 31 9.6 1.1 1 CL0020
Cotton_A_14089_CDS 243 269 242 270 PF01535.20 PPR Family 3 29 31 14.2 0.041 1 CL0020
Cotton_A_14089_CDS 280 329 280 329 PF13041.6 PPR_2 Repeat 1 50 50 54.7 8.3e-15 1 CL0020
Cotton_A_14089_CDS 350 398 350 399 PF13041.6 PPR_2 Repeat 1 49 50 56.3 2.6e-15 1 CL0020
Cotton_A_14089_CDS 417 449 416 449 PF12854.7 PPR_1 Repeat 2 34 34 30.2 2.7e-07 1 CL0020
Cotton_A_14089_CDS 634 680 632 681 PF13041.6 PPR_2 Repeat 3 49 50 47.5 1.5e-12 1 CL0020
Cotton_A_14089_CDS 703 746 702 747 PF13041.6 PPR_2 Repeat 2 45 50 49.6 3.2e-13 1 CL0020
Cotton_A_07764_CDS 45 229 23 234 PF04755.12 PAP_fibrillin Family 20 193 198 35.9 7e-09 1 No_clan
Cotton_A_14703_CDS 93 142 91 143 PF02861.20 Clp_N Family 3 52 53 53.0 2.7e-14 1 No_clan
Cotton_A_14703_CDS 168 219 168 219 PF02861.20 Clp_N Family 1 53 53 45.2 7.5e-12 1 No_clan
Cotton_A_14703_CDS 277 409 276 413 PF00004.29 AAA Domain 2 126 132 47.8 1.8e-12 1 CL0023
Cotton_A_14703_CDS 416 518 416 519 PF17871.1 AAA_lid_9 Domain 1 103 104 114.4 2e-33 1 CL0671
Cotton_A_14703_CDS 674 841 674 842 PF07724.14 AAA_2 Domain 1 170 171 187.9 1.6e-55 1 CL0023
Cotton_A_14703_CDS 848 927 848 928 PF10431.9 ClpB_D2-small Domain 1 80 81 90.1 7e-26 1 CL0671
Cotton_A_06812_CDS 9 294 5 294 PF14736.6 N_Asn_amidohyd Family 6 270 270 302.6 2e-90 1 No_clan
Cotton_A_18542_CDS 58 222 35 260 PF00704.28 Glyco_hydro_18 Domain 24 185 312 62.6 4.9e-17 1 CL0058
Cotton_A_18048_CDS 2 114 1 115 PF04043.15 PMEI Domain 39 153 154 43.6 3.7e-11 1 No_clan
Cotton_A_18048_CDS 169 466 169 467 PF01095.19 Pectinesterase Family 1 297 298 409.1 7.1e-123 1 CL0268
Cotton_A_27471_CDS 31 421 30 425 PF00999.21 Na_H_Exchanger Family 2 377 381 77.7 7.2e-22 1 CL0064
Cotton_A_09767_CDS 8 121 8 121 PF16906.5 Ribosomal_L26 Family 1 82 82 130.4 2.5e-38 1 No_clan
Cotton_A_09767_CDS 51 82 51 82 PF00467.29 KOW Family 1 32 32 36.3 3.4e-09 1 CL0107
Cotton_A_23642_CDS 22 71 21 72 PF00847.20 AP2 Domain 2 53 54 45.7 5.5e-12 1 CL0081
Cotton_A_18014_CDS 32 200 32 201 PF13774.6 Longin Domain 1 83 84 45.8 4.7e-12 1 No_clan
Cotton_A_18014_CDS 218 304 216 304 PF00957.21 Synaptobrevin Family 3 89 89 98.3 1.6e-28 1 CL0445
Cotton_A_35470_CDS 15 62 15 62 PF00249.31 Myb_DNA-binding Domain 1 46 46 45.7 5.5e-12 1 CL0123
Cotton_A_35470_CDS 68 113 68 113 PF00249.31 Myb_DNA-binding Domain 1 46 46 56.2 2.9e-15 1 CL0123
Cotton_A_26730_CDS 165 606 165 606 PF12899.7 Glyco_hydro_100 Domain 1 435 435 707.5 5.2e-213 1 CL0059
Cotton_A_10123_CDS 243 356 223 356 PF02544.16 Steroid_dh Family 41 150 150 85.1 4.7e-24 1 CL0115
Cotton_A_21699_CDS 265 296 264 298 PF00806.19 PUF Repeat 2 33 35 25.0 9.5e-06 1 CL0020
Cotton_A_07264_CDS 51 161 11 172 PF10358.9 NT-C2 Family 39 136 146 31.5 1.3e-07 1 CL0154
Cotton_A_26165_CDS 31 366 30 378 PF00083.24 Sugar_tr Family 2 343 452 311.2 1.2e-92 1 CL0015
Cotton_A_26165_CDS 450 554 434 555 PF00083.24 Sugar_tr Family 347 451 452 98.1 5.2e-28 1 CL0015
Cotton_A_30164_CDS 32 206 31 206 PF01397.21 Terpene_synth Domain 2 192 192 194.0 2e-57 1 No_clan
Cotton_A_30164_CDS 237 502 237 502 PF03936.16 Terpene_synth_C Domain 1 267 267 355.8 1.3e-106 1 CL0613
Cotton_A_17157_CDS 116 164 114 184 PF01842.25 ACT Domain 3 54 67 27.5 1.9e-06 1 CL0070
Cotton_A_17157_CDS 246 289 245 314 PF01842.25 ACT Domain 2 46 67 27.0 2.7e-06 1 CL0070
Cotton_A_03416_CDS 6 78 4 78 PF02798.20 GST_N Domain 3 76 76 53.0 3.3e-14 1 CL0172
Cotton_A_03416_CDS 108 201 93 203 PF00043.25 GST_C Domain 17 91 93 31.1 2e-07 1 CL0497
Cotton_A_31372_CDS 120 163 119 163 PF13639.6 zf-RING_2 Domain 2 44 44 46.6 3.2e-12 1 CL0229
Cotton_A_00011_CDS 54 78 53 79 PF13912.6 zf-C2H2_6 Domain 2 26 27 29.7 4.5e-07 1 CL0361
Cotton_A_24743_CDS 61 165 61 175 PF14226.6 DIOX_N Family 1 104 118 60.2 3.1e-16 1 CL0029
Cotton_A_24743_CDS 262 355 259 357 PF03171.20 2OG-FeII_Oxy Domain 5 99 101 81.4 5.4e-23 1 CL0029
Cotton_A_05791_CDS 94 206 93 206 PF10184.9 DUF2358 Family 2 113 113 81.9 3.9e-23 1 CL0051
Cotton_A_12023_CDS 15 83 11 84 PF16135.5 Jas Family 6 75 76 68.6 3.9e-19 1 No_clan
Cotton_A_15941_CDS 5 377 4 377 PF00022.19 Actin Family 2 407 407 490.3 3.3e-147 1 CL0108
Cotton_A_23802_CDS 11 41 10 48 PF00646.33 F-box Domain 9 39 48 22.6 6.8e-05 1 CL0271
Cotton_A_20836_CDS 24 89 24 89 PF04431.13 Pec_lyase_N Family 1 56 56 65.5 3.7e-18 1 No_clan
Cotton_A_20836_CDS 186 368 175 369 PF00544.19 Pec_lyase_C Domain 30 210 211 83.3 1.7e-23 1 CL0268
Cotton_A_16524_CDS 18 61 18 63 PF00249.31 Myb_DNA-binding Domain 1 44 46 53.8 1.6e-14 1 CL0123
Cotton_A_07374_CDS 32 315 30 316 PF01095.19 Pectinesterase Family 3 297 298 225.4 6.4e-67 1 CL0268
Cotton_A_03717_CDS 68 239 68 239 PF01397.21 Terpene_synth Domain 1 192 192 165.9 8.2e-49 1 No_clan
Cotton_A_03717_CDS 270 527 270 528 PF03936.16 Terpene_synth_C Domain 1 266 267 307.2 9.1e-92 1 CL0613
Cotton_A_22786_CDS 14 71 14 71 PF08246.12 Inhibitor_I29 Domain 1 58 58 59.2 4e-16 1 No_clan
Cotton_A_22786_CDS 101 315 100 315 PF00112.23 Peptidase_C1 Domain 2 218 218 258.1 8.8e-77 1 CL0125
Cotton_A_25588_CDS 86 122 85 126 PF00646.33 F-box Domain 2 38 48 28.9 7.4e-07 1 CL0271
Cotton_A_25588_CDS 488 532 487 532 PF08387.10 FBD Family 6 46 46 33.1 3.7e-08 1 No_clan
Cotton_A_26595_CDS 139 468 138 485 PF07393.11 Sec10 Family 2 330 711 295.8 7.3e-88 1 CL0294
Cotton_A_26595_CDS 481 817 466 819 PF07393.11 Sec10 Family 397 709 711 310.6 2.4e-92 1 CL0294
Cotton_A_25163_CDS 83 354 79 356 PF07714.17 Pkinase_Tyr Domain 5 257 259 153.1 8.4e-45 1 CL0016
Cotton_A_07605_CDS 24 254 24 254 PF06966.12 DUF1295 Family 1 235 235 223.4 2.8e-66 1 CL0115
Cotton_A_17627_CDS 11 94 11 95 PF10235.9 Cript Family 1 88 89 114.8 2e-33 1 No_clan
Cotton_A_03845_CDS 18 204 18 204 PF03997.12 VPS28 Family 1 189 189 236.1 2.4e-70 1 CL0596
Cotton_A_16570_CDS 182 257 171 271 PF06325.13 PrmA Family 159 232 296 31.2 1.4e-07 1 CL0063
Cotton_A_24409_CDS 14 117 14 117 PF02991.16 Atg8 Domain 1 104 104 165.5 2.9e-49 1 CL0072
Cotton_A_36864_CDS 54 81 53 81 PF03087.14 DUF241 Family 2 29 234 24.8 1.7e-05 1 CL0133
Cotton_A_04272_CDS 12 70 3 70 PF03946.14 Ribosomal_L11_N Domain 7 65 65 75.6 1.9e-21 1 No_clan
Cotton_A_04272_CDS 75 144 74 144 PF00298.19 Ribosomal_L11 Domain 2 70 70 64.8 7.4e-18 1 No_clan
Cotton_A_09511_CDS 1 52 1 53 PF05758.12 Ycf1 Family 30 81 945 89.6 1.2e-25 1 No_clan
Cotton_A_09511_CDS 52 148 51 148 PF05758.12 Ycf1 Family 221 326 945 33.8 8.9e-09 1 No_clan
Cotton_A_13079_CDS 4 131 1 132 PF00454.27 PI3_PI4_kinase Family 120 249 250 117.4 8.9e-34 1 CL0016
Cotton_A_13079_CDS 186 215 185 215 PF02260.20 FATC Family 3 32 32 51.7 5.5e-14 1 No_clan
Cotton_A_21074_CDS 2 49 1 50 PF00010.26 HLH Domain 4 52 53 27.6 2e-06 1 No_clan
Cotton_A_17217_CDS 520 649 518 649 PF12014.8 DUF3506 Family 3 139 139 86.7 1.3e-24 1 No_clan
Cotton_A_24394_CDS 20 60 18 60 PF08263.12 LRRNT_2 Family 3 41 41 34.9 1.4e-08 1 No_clan
Cotton_A_24394_CDS 137 195 135 195 PF13855.6 LRR_8 Repeat 3 61 61 35.1 8e-09 1 CL0022
Cotton_A_24394_CDS 406 667 402 667 PF07714.17 Pkinase_Tyr Domain 5 259 259 139.7 1e-40 1 CL0016
Cotton_A_27265_CDS 19 98 11 117 PF18052.1 Rx_N Domain 5 84 93 64.4 8.8e-18 1 No_clan
Cotton_A_27265_CDS 179 420 179 422 PF00931.22 NB-ARC Domain 1 250 252 176.4 5.8e-52 1 CL0023
Cotton_A_10466_CDS 30 79 30 79 PF08100.11 Dimerisation Domain 1 51 51 61.2 6.8e-17 1 CL0123
Cotton_A_10466_CDS 131 345 131 345 PF00891.18 Methyltransf_2 Domain 1 210 210 178.5 9.9e-53 1 CL0063
Cotton_A_14709_CDS 382 438 382 438 PF06886.11 TPX2 Family 1 57 57 75.7 2.4e-21 1 No_clan
Cotton_A_00983_CDS 11 197 11 198 PF13472.6 Lipase_GDSL_2 Domain 1 178 179 76.6 3.1e-21 1 CL0264
Cotton_A_01497_CDS 67 171 67 171 PF06426.14 SATase_N Domain 1 105 105 129.4 6e-38 1 No_clan
Cotton_A_01497_CDS 251 284 251 286 PF00132.24 Hexapep Repeat 1 34 36 23.4 3.3e-05 1 CL0536
Cotton_A_04173_CDS 183 206 182 206 PF13516.6 LRR_6 Repeat 2 24 24 8.8 1.8 1 CL0022
Cotton_A_04173_CDS 233 255 232 255 PF13516.6 LRR_6 Repeat 2 23 24 10.6 0.5 1 CL0022
Cotton_A_04173_CDS 413 435 412 435 PF13516.6 LRR_6 Repeat 2 24 24 15.4 0.014 1 CL0022
Cotton_A_04173_CDS 566 588 565 588 PF13516.6 LRR_6 Repeat 2 24 24 16.3 0.0073 1 CL0022
Cotton_A_16557_CDS 10 33 2 33 PF00400.32 WD40 Repeat 17 38 38 15.8 0.019 1 CL0186
Cotton_A_16557_CDS 211 247 209 248 PF00400.32 WD40 Repeat 3 37 38 16.8 0.0093 1 CL0186
Cotton_A_21291_CDS 70 175 29 178 PF00083.24 Sugar_tr Family 43 142 452 55.8 3.6e-15 1 CL0015
Cotton_A_21291_CDS 179 300 175 303 PF00083.24 Sugar_tr Family 201 322 452 69.4 2.7e-19 1 CL0015
Cotton_A_32849_CDS 9 42 8 47 PF00646.33 F-box Domain 2 35 48 23.3 4.4e-05 1 CL0271
Cotton_A_32849_CDS 159 183 159 183 PF07723.13 LRR_2 Repeat 1 26 26 21.9 0.00019 1 CL0022
Cotton_A_32849_CDS 344 387 342 387 PF08387.10 FBD Family 3 46 46 31.2 1.4e-07 1 No_clan
Cotton_A_19553_CDS 40 127 11 127 PF00583.25 Acetyltransf_1 Family 32 117 117 52.9 3.9e-14 1 CL0257
Cotton_A_17796_CDS 174 298 173 298 PF00549.19 Ligase_CoA Domain 2 153 153 46.4 3.4e-12 1 CL0506
Cotton_A_17796_CDS 400 596 395 599 PF00285.21 Citrate_synt Domain 169 357 361 61.6 6.8e-17 1 No_clan
Cotton_A_24507_CDS 137 217 78 220 PF13369.6 Transglut_core2 Family 4 81 155 26.9 2.9e-06 1 CL0125
Cotton_A_19801_CDS 239 371 226 389 PF00201.18 UDPGT Family 275 388 499 56.9 1.6e-15 1 CL0113
Cotton_A_13509_CDS 84 107 82 109 PF01535.20 PPR Family 6 29 31 12.4 0.14 1 CL0020
Cotton_A_13509_CDS 108 154 107 155 PF13041.6 PPR_2 Repeat 2 48 50 39.1 6.4e-10 1 CL0020
Cotton_A_13509_CDS 209 252 208 254 PF13041.6 PPR_2 Repeat 2 45 50 32.7 6.2e-08 1 CL0020
Cotton_A_13509_CDS 285 310 284 311 PF01535.20 PPR Family 5 30 31 14.5 0.032 1 CL0020
Cotton_A_13509_CDS 412 458 411 460 PF13041.6 PPR_2 Repeat 2 48 50 37.8 1.6e-09 1 CL0020
Cotton_A_13509_CDS 488 510 486 512 PF01535.20 PPR Family 4 26 31 10.2 0.76 1 CL0020
Cotton_A_28415_CDS 37 78 36 78 PF03790.13 KNOX1 Family 2 43 43 63.8 8.6e-18 1 No_clan
Cotton_A_28415_CDS 94 145 94 145 PF03791.13 KNOX2 Family 1 48 48 65.6 2e-18 1 No_clan
Cotton_A_28415_CDS 242 281 242 281 PF05920.11 Homeobox_KN Family 1 40 40 63.6 1.1e-17 1 CL0123
Cotton_A_11047_CDS 11 480 10 491 PF03094.15 Mlo Family 2 467 479 673.0 1.8e-202 1 No_clan
Cotton_A_30481_CDS 750 851 743 851 PF02373.22 JmjC Domain 18 114 114 56.5 3.4e-15 1 CL0029
Cotton_A_20006_CDS 48 165 48 166 PF13537.6 GATase_7 Domain 1 122 123 132.3 8.3e-39 1 CL0052
Cotton_A_20006_CDS 210 360 209 363 PF00733.21 Asn_synthase Domain 2 143 355 196.4 1e-57 1 CL0039
Cotton_A_07621_CDS 38 247 37 248 PF00149.28 Metallophos Domain 2 203 204 71.6 1.2e-19 1 CL0163
Cotton_A_16552_CDS 73 112 72 112 PF12023.8 DUF3511 Family 2 45 45 46.1 3e-12 1 No_clan
Cotton_A_41279_CDS 50 107 48 108 PF04083.16 Abhydro_lipase Family 3 62 64 72.2 1.9e-20 1 CL0028
Cotton_A_41279_CDS 113 365 111 380 PF12146.8 Hydrolase_4 Family 22 214 239 28.1 1.1e-06 1 CL0028
Cotton_A_39692_CDS 52 432 52 433 PF00067.22 p450 Domain 1 406 463 158.1 3.1e-46 1 No_clan
Cotton_A_40834_CDS 2 42 1 45 PF00643.24 zf-B_box Domain 4 39 42 29.6 5.8e-07 1 No_clan
Cotton_A_04179_CDS 131 159 131 160 PF04438.16 zf-HIT Domain 1 29 30 39.5 3.7e-10 1 CL0175
Cotton_A_32720_CDS 17 58 15 59 PF01585.23 G-patch Family 3 44 45 55.8 3.1e-15 1 CL0449
Cotton_A_17822_CDS 81 236 81 245 PF02536.14 mTERF Family 1 162 314 81.2 6.3e-23 1 No_clan
Cotton_A_17822_CDS 246 354 234 355 PF02536.14 mTERF Family 208 313 314 60.6 1.1e-16 1 No_clan
Cotton_A_18896_CDS 112 145 112 145 PF06200.14 tify Domain 1 34 34 59.6 1.3e-16 1 No_clan
Cotton_A_18896_CDS 209 233 209 233 PF09425.10 CCT_2 Motif 2 26 26 38.0 1.1e-09 1 CL0281
Cotton_A_30566_CDS 25 115 13 116 PF00085.20 Thioredoxin Domain 10 102 103 73.0 1.6e-20 1 CL0172
Cotton_A_26347_CDS 1 86 1 89 PF12776.7 Myb_DNA-bind_3 Domain 6 92 96 67.5 1.6e-18 1 CL0123
Cotton_A_31329_CDS 9 158 8 159 PF00179.26 UQ_con Domain 2 139 140 173.7 1.5e-51 1 CL0208
Cotton_A_17877_CDS 127 383 124 420 PF00291.25 PALP Family 4 214 294 118.7 3.1e-34 1 CL0063
Cotton_A_36133_CDS 1138 1230 1108 1239 PF12584.8 TRAPPC10 Family 26 116 156 52.1 5.5e-14 1 CL0212
Cotton_A_30318_CDS 9 112 8 114 PF00169.29 PH Domain 2 102 105 40.0 4.5e-10 1 CL0266
Cotton_A_30318_CDS 200 325 178 338 PF01852.19 START Domain 44 177 209 52.6 3.8e-14 1 CL0209
Cotton_A_30318_CDS 511 718 511 718 PF07059.12 DUF1336 Family 1 229 229 214.7 1.8e-63 1 No_clan
Cotton_A_36526_CDS 25 96 19 99 PF00850.19 Hist_deacetyl Domain 99 173 307 84.8 7.2e-24 1 CL0302
Cotton_A_19662_CDS 36 95 36 102 PF01221.18 Dynein_light Domain 1 62 86 86.4 1.2e-24 1 No_clan
Cotton_A_03093_CDS 11 94 9 133 PF18052.1 Rx_N Domain 3 86 93 80.2 1e-22 1 No_clan
Cotton_A_03093_CDS 170 414 169 424 PF00931.22 NB-ARC Domain 2 251 252 161.7 1.8e-47 1 CL0023
Cotton_A_30772_CDS 475 518 475 518 PF13639.6 zf-RING_2 Domain 1 44 44 42.3 7.1e-11 1 CL0229
Cotton_A_35476_CDS 2 153 1 154 PF00407.19 Bet_v_1 Domain 3 150 151 40.5 2.4e-10 1 CL0209
Cotton_A_40624_CDS 16 232 16 232 PF01991.18 vATP-synt_E Family 1 199 199 241.3 5.9e-72 1 CL0255
Cotton_A_10168_CDS 12 161 11 162 PF00160.21 Pro_isomerase Domain 2 157 158 174.6 1.8e-51 1 CL0475
Cotton_A_12293_CDS 217 300 217 300 PF14547.6 Hydrophob_seed Domain 1 85 85 97.9 2.8e-28 1 CL0482
Cotton_A_10528_CDS 22 227 8 227 PF00141.23 peroxidase Domain 11 229 229 155.2 2.1e-45 1 CL0617
Cotton_A_08412_CDS 156 207 122 207 PF08241.12 Methyltransf_11 Domain 48 96 96 45.6 8.3e-12 1 CL0063
Cotton_A_35192_CDS 92 509 82 512 PF00067.22 p450 Domain 31 460 463 259.3 6.3e-77 1 No_clan
Cotton_A_01675_CDS 26 82 25 83 PF02701.15 zf-Dof Family 2 58 59 112.9 5.4e-33 1 No_clan
Cotton_A_09636_CDS 176 444 175 446 PF00069.25 Pkinase Domain 2 260 264 171.4 2.4e-50 1 CL0016
Cotton_A_35654_CDS 18 78 18 78 PF13921.6 Myb_DNA-bind_6 Domain 1 60 60 63.3 1.8e-17 1 CL0123
Cotton_A_24308_CDS 323 422 318 436 PF01553.21 Acyltransferase Family 7 114 135 37.0 2.3e-09 1 CL0228
Cotton_A_07470_CDS 88 269 85 269 PF00544.19 Pec_lyase_C Domain 28 211 211 93.0 1.9e-26 1 CL0268
Cotton_A_15799_CDS 55 185 55 208 PF00561.20 Abhydrolase_1 Domain 1 125 257 51.5 1e-13 1 CL0028
Cotton_A_39548_CDS 296 338 295 338 PF13639.6 zf-RING_2 Domain 2 44 44 49.3 4.5e-13 1 CL0229
Cotton_A_21105_CDS 69 445 62 445 PF00202.21 Aminotran_3 Domain 10 406 406 369.8 1.3e-110 1 CL0061
Cotton_A_30536_CDS 107 221 106 221 PF03479.15 DUF296 Domain 2 107 107 95.5 2.2e-27 1 CL0615
Cotton_A_28427_CDS 53 249 53 255 PF00067.22 p450 Domain 1 200 463 88.8 3.2e-25 1 No_clan
Cotton_A_28427_CDS 253 480 248 485 PF00067.22 p450 Domain 232 458 463 249.9 4.5e-74 1 No_clan
Cotton_A_32379_CDS 4 317 4 318 PF00762.19 Ferrochelatase Domain 1 316 317 313.7 1.2e-93 1 CL0043
Cotton_A_13469_CDS 97 200 97 200 PF03168.13 LEA_2 Domain 1 101 101 55.4 7e-15 1 CL0159
Cotton_A_40984_CDS 60 137 60 137 PF03330.18 DPBB_1 Domain 1 83 83 84.7 4e-24 1 CL0199
Cotton_A_40984_CDS 148 225 148 225 PF01357.21 Pollen_allerg_1 Domain 1 80 80 97.4 3.5e-28 1 CL0159
Cotton_A_36267_CDS 160 316 150 367 PF01852.19 START Domain 13 165 209 28.7 7.6e-07 1 CL0209
Cotton_A_24786_CDS 20 60 19 60 PF00010.26 HLH Domain 15 53 53 25.2 1.2e-05 1 No_clan
Cotton_A_32284_CDS 182 266 181 266 PF01388.21 ARID Domain 2 90 90 56.9 2.5e-15 1 CL0123
Cotton_A_32284_CDS 390 468 386 472 PF00011.21 HSP20 Family 5 88 102 21.9 0.00014 1 CL0190
Cotton_A_27713_CDS 133 263 131 263 PF03407.16 Nucleotid_trans Family 73 212 212 115.3 3.6e-33 1 CL0110
Cotton_A_26239_CDS 15 121 15 125 PF00072.24 Response_reg Domain 1 107 112 73.6 1.3e-20 1 CL0304
Cotton_A_13547_CDS 12 101 12 106 PF01247.18 Ribosomal_L35Ae Domain 1 90 95 141.2 8.9e-42 1 CL0575
Cotton_A_18281_CDS 73 152 72 154 PF07885.16 Ion_trans_2 Family 2 77 79 61.0 8.1e-17 1 CL0030
Cotton_A_18281_CDS 194 266 193 268 PF07885.16 Ion_trans_2 Family 2 77 79 49.2 3.7e-13 1 CL0030
Cotton_A_01746_CDS 88 366 87 368 PF00069.25 Pkinase Domain 2 260 264 169.3 1e-49 1 CL0016
Cotton_A_09006_CDS 23 103 22 104 PF14144.6 DOG1 Family 2 76 77 70.4 1.1e-19 1 No_clan
Cotton_A_01439_CDS 9 225 9 261 PF03547.18 Mem_trans Family 1 213 387 351.9 2.9e-105 1 CL0064
Cotton_A_10892_CDS 34 219 33 219 PF15704.5 Mt_ATP_synt Family 2 188 188 279.1 1.7e-83 1 No_clan
Cotton_A_02575_CDS 19 201 6 208 PF02854.19 MIF4G Family 12 200 212 103.2 1.5e-29 1 CL0020
Cotton_A_02575_CDS 342 465 338 467 PF09088.11 MIF4G_like Family 66 189 191 130.1 7.9e-38 1 CL0020
Cotton_A_02575_CDS 494 752 483 829 PF09090.11 MIF4G_like_2 Family 7 231 267 112.4 2.5e-32 1 CL0020
Cotton_A_03857_CDS 27 489 26 489 PF00083.24 Sugar_tr Family 2 452 452 459.2 1.5e-137 1 CL0015
Cotton_A_06023_CDS 52 119 16 132 PF05349.12 GATA-N Family 77 145 178 22.7 9.7e-05 1 No_clan
Cotton_A_25944_CDS 1 209 1 209 PF00063.21 Myosin_head Domain 449 677 677 192.3 1.2e-56 1 CL0023
Cotton_A_25944_CDS 227 244 225 245 PF00612.27 IQ Motif 3 20 21 20.3 0.00031 1 CL0220
Cotton_A_25944_CDS 250 267 248 268 PF00612.27 IQ Motif 3 20 21 13.2 0.06 1 CL0220
Cotton_A_25944_CDS 275 293 273 293 PF00612.27 IQ Motif 3 21 21 17.1 0.0033 1 CL0220
Cotton_A_25944_CDS 300 314 298 316 PF00612.27 IQ Motif 5 19 21 12.2 0.13 1 CL0220
Cotton_A_32411_CDS 36 810 35 810 PF01496.19 V_ATPase_I Family 2 813 813 964.9 3e-290 1 No_clan
Cotton_A_03118_CDS 27 451 27 491 PF02516.14 STT3 Family 1 434 488 347.9 1e-103 1 CL0111
Cotton_A_29231_CDS 12 72 2 80 PF12796.7 Ank_2 Repeat 22 73 83 37.9 2e-09 1 CL0465
Cotton_A_29231_CDS 111 208 107 224 PF13962.6 PGG Domain 6 96 116 37.3 2e-09 1 No_clan
Cotton_A_10864_CDS 19 179 19 180 PF00071.22 Ras Domain 1 161 162 202.2 3.6e-60 1 CL0023
Cotton_A_27453_CDS 1 105 1 107 PF13456.6 RVT_3 Domain 19 122 124 23.1 5.1e-05 1 CL0219
Cotton_A_25074_CDS 317 420 314 426 PF01501.20 Glyco_transf_8 Family 4 125 256 34.9 1.2e-08 1 CL0110
Cotton_A_05901_CDS 15 238 11 255 PF00294.24 PfkB Family 5 236 302 91.5 5.8e-26 1 CL0118
Cotton_A_05901_CDS 294 354 257 356 PF00294.24 PfkB Family 240 300 302 48.1 9.4e-13 1 CL0118
Cotton_A_24520_CDS 5 111 4 112 PF12998.7 ING Domain 2 100 101 75.5 3.9e-21 1 No_clan
Cotton_A_13569_CDS 64 465 64 485 PF00067.22 p450 Domain 1 438 463 274.0 2.2e-81 1 No_clan
Cotton_A_07529_CDS 8 103 8 104 PF07876.12 Dabb Domain 1 96 97 104.9 2.6e-30 1 CL0032
Cotton_A_28587_CDS 26 106 26 107 PF05922.16 Inhibitor_I9 Domain 1 81 82 53.3 3.2e-14 1 CL0570
Cotton_A_36702_CDS 3 50 1 50 PF14111.6 DUF4283 Domain 98 145 145 38.5 7.6e-10 1 No_clan
Cotton_A_22609_CDS 63 327 61 331 PF00069.25 Pkinase Domain 4 260 264 175.2 1.6e-51 1 CL0016
Cotton_A_36371_CDS 9 73 1 77 PF02519.14 Auxin_inducible Family 2 60 90 41.5 1.1e-10 1 No_clan
Cotton_A_13451_CDS 136 251 136 253 PF03479.15 DUF296 Domain 1 105 107 91.5 4e-26 1 CL0615
Cotton_A_23324_CDS 56 142 50 158 PF00651.31 BTB Domain 10 97 111 25.8 9.7e-06 1 CL0033
Cotton_A_23324_CDS 216 484 215 484 PF03000.14 NPH3 Family 2 258 258 323.3 1.2e-96 1 No_clan
Cotton_A_04579_CDS 2 110 1 112 PF13087.6 AAA_12 Domain 90 197 199 111.2 5e-32 1 CL0023
Cotton_A_02617_CDS 47 297 42 318 PF09790.9 Hyccin Family 7 273 321 194.1 3e-57 1 No_clan
Cotton_A_38084_CDS 58 252 58 254 PF00012.20 HSP70 Family 1 198 599 321.4 9e-96 1 CL0108
Cotton_A_02737_CDS 360 440 349 440 PF00254.28 FKBP_C Domain 17 94 94 47.5 1.7e-12 1 CL0487
Cotton_A_17251_CDS 18 97 17 99 PF03321.13 GH3 Family 2 80 527 82.2 3.8e-23 1 CL0378
Cotton_A_17251_CDS 100 530 95 531 PF03321.13 GH3 Family 118 526 527 481.5 3.7e-144 1 CL0378
Cotton_A_31982_CDS 50 508 50 527 PF00067.22 p450 Domain 1 442 463 268.3 1.1e-79 1 No_clan
Cotton_A_30234_CDS 28 591 27 593 PF03321.13 GH3 Family 2 525 527 698.2 7.9e-210 1 CL0378
Cotton_A_21386_CDS 167 316 142 327 PF00566.18 RabGAP-TBC Family 43 192 215 124.7 4.1e-36 1 No_clan
Cotton_A_05130_CDS 45 172 43 173 PF04535.12 DUF588 Domain 3 149 150 88.6 3.4e-25 1 CL0396
Cotton_A_02340_CDS 38 645 38 645 PF00012.20 HSP70 Family 1 599 599 875.7 1.2e-263 1 CL0108
Cotton_A_24135_CDS 10 57 10 57 PF00319.18 SRF-TF Domain 1 48 48 91.8 1.3e-26 1 No_clan
Cotton_A_24135_CDS 80 169 78 170 PF01486.17 K-box Family 3 92 93 100.3 5.2e-29 1 No_clan
Cotton_A_03002_CDS 9 218 8 218 PF05023.14 Phytochelatin Domain 2 213 213 291.7 2.3e-87 1 CL0125
Cotton_A_03002_CDS 223 485 223 485 PF09328.10 Phytochelatin_C Family 1 261 261 409.9 3.8e-123 1 No_clan
Cotton_A_15996_CDS 6 159 6 159 PF03737.15 RraA-like Family 1 150 150 147.1 4.1e-43 1 CL0364
Cotton_A_08012_CDS 10 95 9 96 PF03083.16 MtN3_slv Family 2 86 87 83.5 7.8e-24 1 CL0141
Cotton_A_08012_CDS 131 215 130 216 PF03083.16 MtN3_slv Family 2 86 87 91.8 2.1e-26 1 CL0141
Cotton_A_09361_CDS 314 359 312 360 PF00010.26 HLH Domain 4 52 53 38.3 9.7e-10 1 No_clan
Cotton_A_27100_CDS 26 244 26 244 PF00314.17 Thaumatin Domain 1 214 214 273.6 1.1e-81 1 CL0293
Cotton_A_09407_CDS 16 301 16 301 PF17184.4 Rit1_C Domain 1 272 272 319.4 2e-95 1 No_clan
Cotton_A_09407_CDS 392 501 391 501 PF04179.12 Init_tRNA_PT Domain 2 110 110 95.2 2.7e-27 1 CL0031
Cotton_A_02656_CDS 240 308 236 309 PF13424.6 TPR_12 Repeat 6 76 77 42.1 7.7e-11 1 CL0020
Cotton_A_26243_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 56.2 2.8e-15 1 CL0123
Cotton_A_26243_CDS 67 111 67 112 PF00249.31 Myb_DNA-binding Domain 1 45 46 49.3 4.2e-13 1 CL0123
Cotton_A_05007_CDS 8 177 8 180 PF00071.22 Ras Domain 1 159 162 170.7 1.8e-50 1 CL0023
Cotton_A_02542_CDS 9 313 1 313 PF03492.15 Methyltransf_7 Family 14 334 334 405.3 2e-121 1 CL0063
Cotton_A_24993_CDS 11 99 11 100 PF00447.17 HSF_DNA-bind Domain 1 95 96 101.2 3.7e-29 1 CL0123
Cotton_A_06994_CDS 17 178 17 179 PF00071.22 Ras Domain 1 161 162 222.7 1.8e-66 1 CL0023
Cotton_A_08998_CDS 84 156 84 156 PF02941.15 FeThRed_A Domain 1 67 67 96.5 7.3e-28 1 CL0610
Cotton_A_20254_CDS 109 257 107 257 PF01814.23 Hemerythrin Domain 3 131 131 66.1 4.7e-18 1 No_clan
Cotton_A_25962_CDS 29 495 27 510 PF00067.22 p450 Domain 3 450 463 226.4 6e-67 1 No_clan
Cotton_A_05350_CDS 86 285 86 287 PF01643.17 Acyl-ACP_TE Family 1 189 248 147.6 3.6e-43 1 CL0050
Cotton_A_16653_CDS 224 387 224 388 PF01764.25 Lipase_3 Family 1 141 142 140.9 2.4e-41 1 CL0028
Cotton_A_00765_CDS 1 53 1 72 PF00240.23 ubiquitin Domain 1 51 72 33.1 3.4e-08 1 CL0072
Cotton_A_00765_CDS 131 293 131 294 PF03031.18 NIF Family 1 155 156 92.9 1.7e-26 1 CL0137
Cotton_A_39940_CDS 22 540 22 540 PF00995.23 Sec1 Family 1 575 575 432.2 4.9e-129 1 No_clan
Cotton_A_32364_CDS 6 123 6 123 PF02033.18 RBFA Family 1 105 105 96.2 1.4e-27 1 CL0494
Cotton_A_28182_CDS 23 157 22 159 PF05903.14 Peptidase_C97 Domain 2 149 151 146.0 7.4e-43 1 CL0125
Cotton_A_11140_CDS 69 122 69 127 PF00403.26 HMA Domain 1 58 62 58.9 5e-16 1 No_clan
Cotton_A_26844_CDS 31 88 30 107 PF13947.6 GUB_WAK_bind Domain 2 56 106 42.9 6.6e-11 1 No_clan
Cotton_A_26844_CDS 251 520 249 524 PF00069.25 Pkinase Domain 3 258 264 169.5 8.9e-50 1 CL0016
Cotton_A_22345_CDS 265 380 247 392 PF00201.18 UDPGT Family 273 373 499 72.2 3.8e-20 1 CL0113
Cotton_A_25609_CDS 184 207 182 208 PF01535.20 PPR Family 7 30 31 9.4 1.3 1 CL0020
Cotton_A_25609_CDS 242 274 241 274 PF12854.7 PPR_1 Repeat 2 34 34 49.5 2.5e-13 1 CL0020
Cotton_A_25609_CDS 277 321 277 321 PF13041.6 PPR_2 Repeat 1 45 50 41.2 1.4e-10 1 CL0020
Cotton_A_25609_CDS 343 375 343 376 PF12854.7 PPR_1 Repeat 1 33 34 28.2 1.1e-06 1 CL0020
Cotton_A_25609_CDS 382 431 382 431 PF13041.6 PPR_2 Repeat 1 50 50 59.8 2.1e-16 1 CL0020
Cotton_A_25609_CDS 449 480 448 481 PF12854.7 PPR_1 Repeat 2 33 34 29.2 5.4e-07 1 CL0020
Cotton_A_25609_CDS 526 555 525 555 PF01535.20 PPR Family 2 31 31 15.4 0.016 1 CL0020
Cotton_A_25609_CDS 560 590 560 590 PF01535.20 PPR Family 1 31 31 32.2 7e-08 1 CL0020
Cotton_A_25609_CDS 592 641 592 641 PF13041.6 PPR_2 Repeat 1 50 50 64.4 7.7e-18 1 CL0020
Cotton_A_25609_CDS 652 708 650 711 PF13812.6 PPR_3 Repeat 3 59 63 25.1 1.4e-05 1 CL0020
Cotton_A_25609_CDS 817 1106 815 1107 PF01643.17 Acyl-ACP_TE Family 3 247 248 218.5 8.4e-65 1 CL0050
Cotton_A_14104_CDS 10 57 10 57 PF00319.18 SRF-TF Domain 1 48 48 90.4 3.5e-26 1 No_clan
Cotton_A_14104_CDS 93 174 83 175 PF01486.17 K-box Family 11 92 93 88.3 2.9e-25 1 No_clan
Cotton_A_09408_CDS 15 88 14 90 PF12895.7 ANAPC3 Domain 2 80 82 60.5 1.4e-16 1 CL0020
Cotton_A_00719_CDS 22 257 20 283 PF00459.25 Inositol_P Family 3 243 272 177.1 5.1e-52 1 CL0171
Cotton_A_22236_CDS 119 345 119 346 PF02485.21 Branch Family 1 246 247 287.2 1e-85 1 CL0110
Cotton_A_11702_CDS 8 149 7 151 PF00293.28 NUDIX Domain 2 129 131 91.1 5.9e-26 1 CL0261
Cotton_A_17934_CDS 47 99 47 100 PF13833.6 EF-hand_8 Domain 1 54 55 69.9 1.2e-19 1 CL0220
Cotton_A_30759_CDS 16 105 16 106 PF00071.22 Ras Domain 1 90 162 87.6 6.6e-25 1 CL0023
Cotton_A_33372_CDS 60 545 59 546 PF00982.21 Glyco_transf_20 Family 2 473 474 624.9 8.4e-188 1 CL0113
Cotton_A_33372_CDS 595 829 595 830 PF02358.16 Trehalose_PPase Family 1 232 233 259.8 1.5e-77 1 CL0137
Cotton_A_24377_CDS 153 197 150 197 PF02234.19 CDI Family 4 49 49 61.5 6.2e-17 1 No_clan
Cotton_A_11065_CDS 59 393 58 468 PF17681.1 GCP_N_terminal Domain 2 250 306 78.6 6.3e-22 1 CL0540
Cotton_A_11065_CDS 911 1227 911 1227 PF04130.13 GCP_C_terminal Domain 1 309 309 205.0 1.8e-60 1 CL0540
Cotton_A_38186_CDS 44 204 44 206 PF00916.20 Sulfate_transp Family 1 159 380 185.3 1.4e-54 1 CL0062
Cotton_A_38186_CDS 208 403 204 404 PF00916.20 Sulfate_transp Family 184 379 380 203.1 5.5e-60 1 CL0062
Cotton_A_38186_CDS 462 543 455 546 PF01740.21 STAS Domain 6 85 117 50.2 1.8e-13 1 CL0502
Cotton_A_25765_CDS 2 65 1 79 PF05919.11 Mitovir_RNA_pol Family 121 187 498 60.2 2.1e-16 1 CL0027
Cotton_A_05909_CDS 189 251 189 252 PF03456.18 uDENN Domain 1 65 66 23.2 8.9e-05 1 No_clan
Cotton_A_05909_CDS 579 680 500 682 PF02141.21 DENN Family 83 184 186 80.1 1.9e-22 1 CL0330
Cotton_A_01247_CDS 17 271 17 271 PF00069.25 Pkinase Domain 1 264 264 231.7 9.7e-69 1 CL0016
Cotton_A_01247_CDS 298 339 298 340 PF03822.14 NAF Domain 1 35 54 50.6 1.6e-13 1 CL0573
Cotton_A_07405_CDS 89 187 80 189 PF01565.23 FAD_binding_4 Domain 36 136 139 61.9 5.1e-17 1 CL0077
Cotton_A_07405_CDS 450 507 450 508 PF08031.12 BBE Domain 1 45 46 80.5 6.8e-23 1 CL0277
Cotton_A_02101_CDS 105 151 105 151 PF01476.20 LysM Domain 1 44 44 36.4 4e-09 1 CL0187
Cotton_A_02101_CDS 169 212 169 212 PF01476.20 LysM Domain 1 44 44 32.0 9.5e-08 1 CL0187
Cotton_A_30446_CDS 1 309 1 310 PF03105.19 SPX Domain 1 383 384 217.8 4.5e-64 1 No_clan
Cotton_A_30446_CDS 399 734 399 734 PF03124.14 EXS Family 1 331 331 285.0 8.2e-85 1 CL0182
Cotton_A_34466_CDS 76 130 76 133 PF00004.29 AAA Domain 1 55 132 38.8 1.1e-09 1 CL0023
Cotton_A_24541_CDS 19 310 19 310 PF00069.25 Pkinase Domain 1 264 264 229.1 5.9e-68 1 CL0016
Cotton_A_16536_CDS 24 82 22 82 PF00170.21 bZIP_1 Family 5 63 64 34.8 1.3e-08 1 CL0018
Cotton_A_01828_CDS 25 91 22 93 PF00111.27 Fer2 Domain 4 76 78 26.0 6.4e-06 1 CL0486
Cotton_A_01828_CDS 102 176 102 177 PF01799.20 Fer2_2 Domain 1 75 76 106.3 6e-31 1 CL0486
Cotton_A_01828_CDS 272 448 268 449 PF00941.21 FAD_binding_5 Family 4 170 171 168.0 1.5e-49 1 CL0077
Cotton_A_01828_CDS 457 562 456 562 PF03450.17 CO_deh_flav_C Domain 2 103 103 106.0 9.8e-31 1 CL0233
Cotton_A_01828_CDS 621 728 621 728 PF01315.22 Ald_Xan_dh_C Domain 1 110 110 105.6 1.7e-30 1 No_clan
Cotton_A_01828_CDS 745 1281 739 1281 PF02738.18 Ald_Xan_dh_C2 Family 8 550 550 619.9 3.4e-186 1 No_clan
Cotton_A_28712_CDS 60 482 56 483 PF00450.22 Peptidase_S10 Domain 6 418 419 464.5 4.5e-139 1 CL0028
Cotton_A_32569_CDS 140 268 140 268 PF13578.6 Methyltransf_24 Domain 1 106 106 36.2 9.5e-09 1 CL0063
Cotton_A_21391_CDS 1 43 1 59 PF00450.22 Peptidase_S10 Domain 320 358 419 22.9 5.1e-05 1 CL0028
Cotton_A_01806_CDS 199 444 198 450 PF04646.12 DUF604 Family 2 250 256 310.9 6.3e-93 1 CL0110
Cotton_A_06132_CDS 5 274 4 274 PF01459.22 Porin_3 Family 2 270 270 228.4 1.1e-67 1 CL0193
Cotton_A_07586_CDS 201 376 201 376 PF14543.6 TAXi_N Domain 1 178 178 161.4 2.6e-47 1 CL0129
Cotton_A_07586_CDS 398 557 397 559 PF14541.6 TAXi_C Domain 2 159 161 55.6 5.2e-15 1 CL0129
Cotton_A_00305_CDS 28 215 27 217 PF00909.21 Ammonium_transp Family 2 170 399 91.0 6.4e-26 1 No_clan
Cotton_A_04616_CDS 60 131 60 164 PF00300.22 His_Phos_1 Domain 1 70 194 33.1 4.2e-08 1 CL0071
Cotton_A_13691_CDS 60 114 57 115 PF13920.6 zf-C3HC4_3 Domain 4 49 50 36.1 4.3e-09 1 CL0229
Cotton_A_38273_CDS 8 108 8 108 PF12776.7 Myb_DNA-bind_3 Domain 1 96 96 43.0 7e-11 1 CL0123
Cotton_A_24174_CDS 46 285 46 287 PF00141.23 peroxidase Domain 1 227 229 249.3 3.8e-74 1 CL0617
Cotton_A_11250_CDS 57 155 51 164 PF00504.21 Chloroa_b-bind Family 14 100 161 22.3 0.00015 1 No_clan
Cotton_A_13405_CDS 86 142 85 143 PF02701.15 zf-Dof Family 2 58 59 110.5 3.1e-32 1 No_clan
Cotton_A_19239_CDS 145 195 108 205 PF01764.25 Lipase_3 Family 51 105 142 22.8 6.5e-05 1 CL0028
Cotton_A_06505_CDS 19 569 17 570 PF05701.11 WEMBL Family 3 561 562 192.7 1.2e-56 1 No_clan
Cotton_A_23536_CDS 5 261 3 261 PF00069.25 Pkinase Domain 3 264 264 173.8 4.3e-51 1 CL0016
Cotton_A_10489_CDS 17 391 16 405 PF00899.21 ThiF Domain 2 223 244 102.0 3.2e-29 1 CL0063
Cotton_A_10489_CDS 192 261 190 261 PF16190.5 E1_FCCH Domain 3 71 71 96.5 7.6e-28 1 No_clan
Cotton_A_10489_CDS 262 331 262 331 PF16191.5 E1_4HB Domain 1 70 70 81.3 4.3e-23 1 No_clan
Cotton_A_10489_CDS 420 662 417 662 PF10585.9 UBA_e1_thiolCys Domain 15 252 252 226.4 5.2e-67 1 No_clan
Cotton_A_10489_CDS 549 722 445 727 PF00899.21 ThiF Domain 180 239 244 39.9 3e-10 1 CL0063
Cotton_A_10489_CDS 733 822 733 822 PF09358.10 E1_UFD Domain 1 93 93 71.6 6.5e-20 1 No_clan
Cotton_A_03872_CDS 42 68 42 68 PF08513.11 LisH Domain 1 27 27 35.9 4.6e-09 1 CL0561
Cotton_A_03872_CDS 79 221 78 222 PF10607.9 CLTH Domain 2 147 148 126.9 5.7e-37 1 No_clan
Cotton_A_21286_CDS 521 757 521 757 PF12490.8 BCAS3 Family 1 246 246 243.2 2.7e-72 1 No_clan
Cotton_A_03734_CDS 77 104 77 106 PF13540.6 RCC1_2 Repeat 1 28 30 32.1 6.7e-08 1 CL0186
Cotton_A_03734_CDS 148 197 148 198 PF00415.18 RCC1 Repeat 1 49 50 45.8 7.1e-12 1 CL0186
Cotton_A_03734_CDS 279 308 279 308 PF13540.6 RCC1_2 Repeat 1 30 30 34.1 1.6e-08 1 CL0186
Cotton_A_03734_CDS 355 399 354 399 PF00415.18 RCC1 Repeat 4 50 50 25.4 1.6e-05 1 CL0186
Cotton_A_03734_CDS 403 445 402 446 PF00415.18 RCC1 Repeat 2 44 50 30.9 3e-07 1 CL0186
Cotton_A_01721_CDS 290 329 289 329 PF13639.6 zf-RING_2 Domain 2 44 44 39.9 4e-10 1 CL0229
Cotton_A_34087_CDS 7 131 6 143 PF06888.12 Put_Phosphatase Family 2 131 234 166.1 8e-49 1 CL0137
Cotton_A_19322_CDS 20 49 19 49 PF04564.15 U-box Domain 2 31 73 41.3 1.3e-10 1 CL0229
Cotton_A_29609_CDS 53 266 33 267 PF03007.16 WES_acyltransf Domain 50 263 264 30.5 3e-07 1 CL0149
Cotton_A_29609_CDS 323 468 323 468 PF06974.13 DUF1298 Family 1 145 145 143.8 3.5e-42 1 No_clan
Cotton_A_13063_CDS 201 436 199 437 PF12146.8 Hydrolase_4 Family 4 238 239 251.5 6.4e-75 1 CL0028
Cotton_A_40343_CDS 116 246 116 247 PF00782.20 DSPc Domain 1 132 133 99.4 1.3e-28 1 CL0031
Cotton_A_11495_CDS 232 332 232 333 PF08241.12 Methyltransf_11 Domain 1 95 96 73.5 1.6e-20 1 CL0063
Cotton_A_09194_CDS 42 184 41 185 PF03208.19 PRA1 Family 2 142 143 157.6 1.5e-46 1 No_clan
Cotton_A_30567_CDS 79 126 77 127 PF00010.26 HLH Domain 4 52 53 39.8 3.2e-10 1 No_clan
Cotton_A_12508_CDS 1 138 1 139 PF01582.20 TIR Family 45 175 176 91.2 6.6e-26 1 CL0173
Cotton_A_12508_CDS 141 366 139 382 PF00931.22 NB-ARC Domain 3 230 252 100.7 7.5e-29 1 CL0023
Cotton_A_28194_CDS 68 331 68 332 PF02485.21 Branch Family 1 246 247 236.2 3.7e-70 1 CL0110
Cotton_A_32124_CDS 1 296 1 296 PF08433.10 KTI12 Domain 1 272 272 273.0 2.7e-81 1 CL0023
Cotton_A_34743_CDS 71 176 71 176 PF01453.24 B_lectin Domain 1 105 105 121.6 1.8e-35 1 No_clan
Cotton_A_34743_CDS 208 319 208 319 PF00954.20 S_locus_glycop Domain 1 111 111 111.0 4.1e-32 1 No_clan
Cotton_A_34743_CDS 341 407 341 408 PF08276.11 PAN_2 Domain 1 66 67 79.1 2e-22 1 CL0168
Cotton_A_34743_CDS 540 688 535 691 PF07714.17 Pkinase_Tyr Domain 123 256 259 76.2 2.3e-21 1 CL0016
Cotton_A_34743_CDS 692 736 692 736 PF11883.8 DUF3403 Family 1 46 46 37.5 1.9e-09 1 No_clan
Cotton_A_03800_CDS 34 186 34 220 PF01227.22 GTP_cyclohydroI Domain 1 141 179 119.5 1e-34 1 CL0334
Cotton_A_03800_CDS 274 459 272 460 PF01227.22 GTP_cyclohydroI Domain 3 178 179 123.7 5.4e-36 1 CL0334
Cotton_A_02156_CDS 50 110 49 110 PF00226.31 DnaJ Domain 2 63 63 64.9 5.4e-18 1 CL0392
Cotton_A_24981_CDS 96 278 96 280 PF00005.27 ABC_tran Domain 1 135 137 53.7 2.9e-14 1 CL0023
Cotton_A_24981_CDS 431 642 430 642 PF01061.24 ABC2_membrane Family 2 210 210 118.3 2.9e-34 1 CL0181
Cotton_A_24981_CDS 647 708 647 714 PF08370.11 PDR_assoc Family 1 61 65 60.8 7.4e-17 1 No_clan
Cotton_A_24981_CDS 785 937 785 937 PF00005.27 ABC_tran Domain 1 137 137 68.4 8.4e-19 1 CL0023
Cotton_A_24981_CDS 1082 1296 1082 1296 PF01061.24 ABC2_membrane Family 1 210 210 147.0 4.8e-43 1 CL0181
Cotton_A_31120_CDS 94 156 94 156 PF04406.14 TP6A_N Domain 1 62 62 44.8 9.1e-12 1 No_clan
Cotton_A_09507_CDS 201 707 201 707 PF03141.16 Methyltransf_29 Family 1 506 506 740.8 6.8e-223 1 CL0063
Cotton_A_13098_CDS 16 135 16 139 PF00072.24 Response_reg Domain 1 108 112 75.2 4.3e-21 1 CL0304
Cotton_A_03689_CDS 7 68 7 74 PF00076.22 RRM_1 Domain 1 61 70 57.4 9.5e-16 1 CL0221
Cotton_A_03689_CDS 107 173 107 176 PF00076.22 RRM_1 Domain 1 67 70 55.1 4.8e-15 1 CL0221
Cotton_A_07159_CDS 178 228 177 229 PF00847.20 AP2 Domain 2 53 54 53.0 3e-14 1 CL0081
Cotton_A_11853_CDS 24 223 22 223 PF01680.17 SOR_SNZ Domain 3 207 207 292.4 1.8e-87 1 CL0036
Cotton_A_04532_CDS 181 441 177 451 PF00862.19 Sucrose_synth Family 273 522 548 42.1 3.6e-11 1 CL0113
Cotton_A_04532_CDS 486 658 476 661 PF00534.20 Glycos_transf_1 Family 12 169 172 88.5 3.5e-25 1 CL0113
Cotton_A_04532_CDS 798 969 794 989 PF05116.13 S6PP Family 35 193 247 64.2 1.3e-17 1 CL0137
Cotton_A_16131_CDS 28 320 28 322 PF00332.18 Glyco_hydro_17 Domain 1 309 313 275.7 6e-82 1 CL0058
Cotton_A_17514_CDS 26 166 26 167 PF00005.27 ABC_tran Domain 1 136 137 89.2 3.4e-25 1 CL0023
Cotton_A_17772_CDS 39 139 36 140 PF03168.13 LEA_2 Domain 4 100 101 42.2 9.2e-11 1 CL0159
Cotton_A_23056_CDS 47 132 39 132 PF01657.17 Stress-antifung Family 10 95 95 45.4 9.4e-12 1 No_clan
Cotton_A_23056_CDS 152 240 146 241 PF01657.17 Stress-antifung Family 9 94 95 37.1 3.7e-09 1 No_clan
Cotton_A_23056_CDS 324 528 323 595 PF00069.25 Pkinase Domain 2 206 264 142.0 2.2e-41 1 CL0016
Cotton_A_08807_CDS 28 127 28 128 PF06179.12 Med22 Family 1 104 105 97.8 3.7e-28 1 No_clan
Cotton_A_11589_CDS 133 217 133 218 PF00439.25 Bromodomain Domain 1 83 84 77.0 9e-22 1 No_clan
Cotton_A_11589_CDS 280 342 279 343 PF17035.5 BET Domain 2 63 64 58.5 5.4e-16 1 CL0665
Cotton_A_11767_CDS 29 630 29 630 PF00888.22 Cullin Family 1 618 618 728.0 9.8e-219 1 No_clan
Cotton_A_11767_CDS 662 723 662 724 PF10557.9 Cullin_Nedd8 Domain 1 62 63 91.5 2.4e-26 1 CL0123
Cotton_A_23892_CDS 8 135 8 135 PF02365.15 NAM Family 1 126 126 128.8 2.2e-37 1 No_clan
Cotton_A_30359_CDS 68 104 65 109 PF00153.27 Mito_carr Family 4 40 97 32.0 8.5e-08 1 No_clan
Cotton_A_30359_CDS 148 228 146 233 PF00153.27 Mito_carr Family 3 90 97 58.1 6.3e-16 1 No_clan
Cotton_A_30359_CDS 242 329 237 330 PF00153.27 Mito_carr Family 6 96 97 88.9 1.6e-25 1 No_clan
Cotton_A_17565_CDS 41 97 41 98 PF08246.12 Inhibitor_I29 Domain 1 57 58 66.3 2.4e-18 1 No_clan
Cotton_A_17565_CDS 125 341 125 341 PF00112.23 Peptidase_C1 Domain 1 218 218 282.1 3.8e-84 1 CL0125
Cotton_A_15324_CDS 3 75 3 75 PF06592.13 DUF1138 Family 1 73 73 145.6 3.3e-43 1 No_clan
Cotton_A_11124_CDS 24 303 14 304 PF03151.16 TPT Family 12 289 290 49.2 4.6e-13 1 CL0184
Cotton_A_38682_CDS 5 195 5 196 PF04511.15 DER1 Family 1 190 191 162.8 8.4e-48 1 CL0207
Cotton_A_37996_CDS 3 53 3 73 PF13975.6 gag-asp_proteas Domain 1 53 92 35.2 1.4e-08 1 CL0129
Cotton_A_37996_CDS 163 280 162 321 PF00078.27 RVT_1 Family 2 175 222 71.7 6.2e-20 1 CL0027
Cotton_A_14501_CDS 13 123 12 126 PF01412.18 ArfGap Domain 2 114 117 97.6 4.8e-28 1 No_clan
Cotton_A_12236_CDS 70 168 68 173 PF01154.17 HMG_CoA_synt_N Domain 3 101 174 121.4 3.5e-35 1 CL0046
Cotton_A_08688_CDS 72 189 61 189 PF00134.23 Cyclin_N Domain 17 127 127 90.9 5.2e-26 1 CL0065
Cotton_A_08688_CDS 191 298 191 307 PF02984.19 Cyclin_C Domain 1 104 119 60.9 1.2e-16 1 CL0065
Cotton_A_22024_CDS 153 185 152 185 PF06200.14 tify Domain 2 34 34 48.0 5.5e-13 1 No_clan
Cotton_A_20798_CDS 58 146 58 147 PF06749.12 DUF1218 Family 1 90 91 71.6 5.8e-20 1 No_clan
Cotton_A_22008_CDS 82 111 77 111 PF00400.32 WD40 Repeat 10 38 38 17.9 0.0043 1 CL0186
Cotton_A_22008_CDS 172 201 165 201 PF00400.32 WD40 Repeat 9 36 38 20.9 0.00048 1 CL0186
Cotton_A_22008_CDS 219 255 213 255 PF00400.32 WD40 Repeat 7 38 38 22.8 0.00012 1 CL0186
Cotton_A_09499_CDS 223 299 222 299 PF13802.6 Gal_mutarotas_2 Domain 2 66 66 70.8 8.8e-20 1 CL0103
Cotton_A_09499_CDS 334 778 334 778 PF01055.26 Glyco_hydro_31 Family 1 440 440 501.7 2.2e-150 1 CL0058
Cotton_A_06857_CDS 1 83 1 87 PF02441.19 Flavoprotein Family 68 154 158 80.2 1.3e-22 1 No_clan
Cotton_A_26373_CDS 108 286 106 287 PF00574.23 CLP_protease Domain 3 181 182 267.4 6.2e-80 1 CL0127
Cotton_A_14081_CDS 118 266 118 269 PF03364.20 Polyketide_cyc Family 1 127 130 67.1 1.6e-18 1 CL0209
Cotton_A_35847_CDS 291 329 288 332 PF13920.6 zf-C3HC4_3 Domain 4 46 50 30.0 3.4e-07 1 CL0229
Cotton_A_23708_CDS 73 186 72 187 PF03479.15 DUF296 Domain 2 106 107 68.2 6.8e-19 1 CL0615
Cotton_A_11628_CDS 56 102 56 102 PF00249.31 Myb_DNA-binding Domain 1 46 46 56.6 2.2e-15 1 CL0123
Cotton_A_11628_CDS 108 154 108 154 PF00249.31 Myb_DNA-binding Domain 1 46 46 60.0 1.9e-16 1 CL0123
Cotton_A_11628_CDS 160 202 160 203 PF00249.31 Myb_DNA-binding Domain 1 43 46 43.0 3.7e-11 1 CL0123
Cotton_A_00739_CDS 11 79 10 80 PF00076.22 RRM_1 Domain 2 69 70 79.0 1.6e-22 1 CL0221
Cotton_A_24220_CDS 13 98 12 99 PF03083.16 MtN3_slv Family 2 86 87 77.9 4.4e-22 1 CL0141
Cotton_A_32399_CDS 85 296 51 296 PF03007.16 WES_acyltransf Domain 47 264 264 51.2 1.4e-13 1 CL0149
Cotton_A_32399_CDS 362 506 362 506 PF06974.13 DUF1298 Family 1 145 145 174.5 1.2e-51 1 No_clan
Cotton_A_25774_CDS 6 55 5 56 PF00847.20 AP2 Domain 2 53 54 43.1 3.7e-11 1 CL0081
Cotton_A_05922_CDS 15 89 14 91 PF14569.6 zf-UDP Domain 2 76 78 122.0 7.9e-36 1 CL0229
Cotton_A_05922_CDS 290 435 290 435 PF03552.14 Cellulose_synt Family 1 146 722 287.4 2.7e-85 1 CL0110
Cotton_A_23916_CDS 11 53 10 58 PF00319.18 SRF-TF Domain 2 43 48 57.1 8.7e-16 1 No_clan
Cotton_A_09951_CDS 38 119 38 121 PF05922.16 Inhibitor_I9 Domain 1 80 82 39.8 5.2e-10 1 CL0570
Cotton_A_09951_CDS 144 576 144 600 PF00082.22 Peptidase_S8 Domain 1 284 298 172.5 1.2e-50 1 No_clan
Cotton_A_09951_CDS 374 460 370 460 PF02225.22 PA Family 5 89 89 44.7 1e-11 1 CL0364
Cotton_A_09951_CDS 655 751 655 751 PF17766.1 fn3_6 Domain 1 99 99 93.5 7.1e-27 1 CL0159
Cotton_A_00750_CDS 21 137 14 146 PF04857.20 CAF1 Family 8 125 319 33.2 3.1e-08 1 CL0219
Cotton_A_21201_CDS 2 134 2 136 PF00334.19 NDK Domain 1 133 135 188.3 5.4e-56 1 No_clan
Cotton_A_39293_CDS 174 201 174 201 PF05678.14 VQ Motif 1 28 28 45.4 3.9e-12 1 No_clan
Cotton_A_11860_CDS 2 73 1 73 PF05922.16 Inhibitor_I9 Domain 7 82 82 52.7 5e-14 1 CL0570
Cotton_A_11860_CDS 100 551 99 557 PF00082.22 Peptidase_S8 Domain 2 291 298 159.3 1.3e-46 1 No_clan
Cotton_A_11860_CDS 352 425 338 426 PF02225.22 PA Family 20 88 89 40.7 1.8e-10 1 CL0364
Cotton_A_11860_CDS 626 724 626 725 PF17766.1 fn3_6 Domain 1 98 99 84.5 4.6e-24 1 CL0159
Cotton_A_08034_CDS 91 141 87 150 PF00403.26 HMA Domain 6 54 62 38.0 1.6e-09 1 No_clan
Cotton_A_08034_CDS 186 241 184 243 PF00403.26 HMA Domain 2 60 62 51.3 1.2e-13 1 No_clan
Cotton_A_10597_CDS 14 131 14 132 PF01641.18 SelR Family 1 120 121 157.6 1.3e-46 1 CL0080
Cotton_A_12394_CDS 75 199 74 199 PF04859.12 DUF641 Family 2 128 128 138.5 1.5e-40 1 No_clan
Cotton_A_01889_CDS 152 322 149 323 PF00953.21 Glycos_transf_4 Family 4 159 160 129.2 1.4e-37 1 No_clan
Cotton_A_34905_CDS 10 101 8 105 PF03226.14 Yippee-Mis18 Domain 3 90 105 54.7 9.2e-15 1 CL0080
Cotton_A_01083_CDS 75 167 61 169 PF00201.18 UDPGT Family 270 340 499 31.4 8.4e-08 1 CL0113
Cotton_A_22959_CDS 13 98 12 98 PF14389.6 Lzipper-MIP1 Family 2 84 84 71.6 5e-20 1 No_clan
Cotton_A_22959_CDS 305 429 302 429 PF04784.14 DUF547 Family 4 123 123 121.9 1.5e-35 1 No_clan
Cotton_A_09270_CDS 5 96 5 122 PF18052.1 Rx_N Domain 1 88 93 73.2 1.6e-20 1 No_clan
Cotton_A_09270_CDS 173 397 172 415 PF00931.22 NB-ARC Domain 2 224 252 175.0 1.6e-51 1 CL0023
Cotton_A_01878_CDS 52 82 51 83 PF14852.6 Fis1_TPR_N Domain 2 32 33 41.2 9.3e-11 1 CL0020
Cotton_A_01878_CDS 90 142 90 142 PF14853.6 Fis1_TPR_C Domain 1 53 53 69.8 1.5e-19 1 CL0020
Cotton_A_09034_CDS 16 122 15 126 PF02466.19 Tim17 Family 2 110 111 93.0 1.4e-26 1 No_clan
Cotton_A_03809_CDS 579 679 572 687 PF05064.13 Nsp1_C Family 8 107 116 78.7 2.8e-22 1 No_clan
Cotton_A_01104_CDS 9 189 7 189 PF00227.26 Proteasome Domain 3 190 190 154.3 2.6e-45 1 CL0052
Cotton_A_11506_CDS 15 133 14 136 PF01412.18 ArfGap Domain 2 114 117 78.2 5e-22 1 No_clan
Cotton_A_33454_CDS 27 343 25 355 PF00743.19 FMO-like Family 6 335 532 102.0 2.8e-29 1 CL0063
Cotton_A_37711_CDS 214 431 211 436 PF13621.6 Cupin_8 Domain 4 246 254 76.3 3e-21 1 CL0029
Cotton_A_23214_CDS 185 206 184 212 PF01535.20 PPR Family 4 25 31 10.8 0.47 1 CL0020
Cotton_A_23214_CDS 218 247 217 247 PF01535.20 PPR Family 2 31 31 29.6 4.7e-07 1 CL0020
Cotton_A_23214_CDS 249 297 249 299 PF13041.6 PPR_2 Repeat 1 49 50 40.9 1.7e-10 1 CL0020
Cotton_A_23214_CDS 321 369 320 369 PF13041.6 PPR_2 Repeat 2 50 50 53.9 1.5e-14 1 CL0020
Cotton_A_23214_CDS 393 422 393 423 PF01535.20 PPR Family 1 30 31 33.6 2.5e-08 1 CL0020
Cotton_A_23214_CDS 426 473 425 474 PF13041.6 PPR_2 Repeat 2 49 50 59.0 3.8e-16 1 CL0020
Cotton_A_23214_CDS 496 543 495 544 PF13041.6 PPR_2 Repeat 2 49 50 59.8 2.2e-16 1 CL0020
Cotton_A_23214_CDS 614 640 607 643 PF13812.6 PPR_3 Repeat 34 60 63 23.9 3.1e-05 1 CL0020
Cotton_A_18745_CDS 77 122 77 122 PF00415.18 RCC1 Repeat 1 50 50 31.8 1.7e-07 1 CL0186
Cotton_A_18745_CDS 125 171 125 173 PF00415.18 RCC1 Repeat 1 48 50 28.5 1.8e-06 1 CL0186
Cotton_A_18745_CDS 182 264 180 264 PF00415.18 RCC1 Repeat 5 50 50 27.5 3.6e-06 1 CL0186
Cotton_A_18745_CDS 267 314 267 319 PF00415.18 RCC1 Repeat 1 44 50 35.1 1.6e-08 1 CL0186
Cotton_A_18745_CDS 373 419 369 419 PF00415.18 RCC1 Repeat 6 50 50 36.4 5.9e-09 1 CL0186
Cotton_A_08157_CDS 67 200 67 201 PF00334.19 NDK Domain 1 134 135 177.8 9.9e-53 1 No_clan
Cotton_A_39622_CDS 70 179 69 201 PF00293.28 NUDIX Domain 2 107 131 48.2 1.1e-12 1 CL0261
Cotton_A_28489_CDS 40 456 38 462 PF00909.21 Ammonium_transp Family 3 393 399 422.3 1.5e-126 1 No_clan
Cotton_A_31375_CDS 67 171 67 181 PF14226.6 DIOX_N Family 1 103 118 79.1 4.4e-22 1 CL0029
Cotton_A_31375_CDS 223 318 219 319 PF03171.20 2OG-FeII_Oxy Domain 5 100 101 89.9 1.2e-25 1 CL0029
Cotton_A_20401_CDS 47 72 44 72 PF01535.20 PPR Family 6 31 31 17.8 0.0028 1 CL0020
Cotton_A_29541_CDS 13 75 13 75 PF00462.24 Glutaredoxin Domain 1 60 60 53.0 3e-14 1 CL0172
Cotton_A_26758_CDS 56 159 56 159 PF00011.21 HSP20 Family 1 102 102 107.8 2.5e-31 1 CL0190
Cotton_A_29087_CDS 316 583 315 584 PF00664.23 ABC_membrane Family 2 273 274 79.0 4.4e-22 1 CL0241
Cotton_A_29087_CDS 650 784 650 785 PF00005.27 ABC_tran Domain 1 136 137 77.3 1.6e-21 1 CL0023
Cotton_A_25824_CDS 115 434 115 435 PF10250.9 O-FucT Family 1 335 336 259.3 7.6e-77 1 CL0113
Cotton_A_28826_CDS 2 82 1 82 PF03140.15 DUF247 Family 315 397 397 63.8 1.6e-17 1 No_clan
Cotton_A_31580_CDS 13 166 8 167 PF00071.22 Ras Domain 9 161 162 193.4 1.9e-57 1 CL0023
Cotton_A_26883_CDS 29 68 27 68 PF08263.12 LRRNT_2 Family 3 41 41 33.6 3.4e-08 1 No_clan
Cotton_A_26883_CDS 93 108 92 110 PF13516.6 LRR_6 Repeat 2 17 24 10.3 0.62 1 CL0022
Cotton_A_26883_CDS 117 176 116 176 PF13855.6 LRR_8 Repeat 2 61 61 35.7 5.3e-09 1 CL0022
Cotton_A_26883_CDS 415 687 413 687 PF07714.17 Pkinase_Tyr Domain 3 259 259 138.2 2.9e-40 1 CL0016
Cotton_A_25804_CDS 103 536 99 537 PF00854.21 PTR2 Family 5 394 395 359.3 2.3e-107 1 CL0015
Cotton_A_32558_CDS 56 260 56 260 PF00891.18 Methyltransf_2 Domain 1 210 210 199.7 3.3e-59 1 CL0063
Cotton_A_00998_CDS 76 130 76 130 PF14416.6 PMR5N Domain 1 53 53 84.1 5.9e-24 1 No_clan
Cotton_A_00998_CDS 129 383 121 384 PF13839.6 PC-Esterase Family 35 282 283 233.7 3.4e-69 1 CL0264
Cotton_A_37199_CDS 9 68 7 72 PF04561.14 RNA_pol_Rpb2_2 Domain 3 63 190 55.6 5.2e-15 1 No_clan
Cotton_A_06203_CDS 221 497 207 513 PF00294.24 PfkB Family 26 272 302 106.4 1.6e-30 1 CL0118
Cotton_A_35873_CDS 81 327 79 394 PF00069.25 Pkinase Domain 10 221 264 122.4 2.1e-35 1 CL0016
Cotton_A_33483_CDS 17 106 16 107 PF12894.7 ANAPC4_WD40 Repeat 2 89 92 24.7 2.1e-05 1 CL0186
Cotton_A_33527_CDS 103 225 97 229 PF03208.19 PRA1 Family 12 134 143 66.7 1.6e-18 1 No_clan
Cotton_A_04719_CDS 52 249 49 266 PF07714.17 Pkinase_Tyr Domain 4 205 259 153.8 4.9e-45 1 CL0016
Cotton_A_04719_CDS 289 332 288 332 PF11883.8 DUF3403 Family 2 46 46 31.3 1.7e-07 1 No_clan
Cotton_A_22206_CDS 15 76 14 79 PF00191.20 Annexin Family 2 63 66 82.0 2.3e-23 1 No_clan
Cotton_A_22206_CDS 87 148 86 149 PF00191.20 Annexin Family 2 63 66 56.5 2.1e-15 1 No_clan
Cotton_A_36479_CDS 37 129 36 148 PF00406.22 ADK Domain 2 94 151 119.0 1.9e-34 1 CL0023
Cotton_A_36479_CDS 137 222 111 224 PF00348.17 polyprenyl_synt Domain 134 222 256 91.3 4.9e-26 1 CL0613
Cotton_A_18495_CDS 42 95 42 95 PF05605.12 zf-Di19 Domain 1 54 54 76.7 1.2e-21 1 CL0361
Cotton_A_18495_CDS 120 220 120 220 PF14571.6 Di19_C Family 1 102 102 111.7 2.1e-32 1 No_clan
Cotton_A_11631_CDS 7 115 7 116 PF01900.19 RNase_P_Rpp14 Family 1 102 103 87.5 5.9e-25 1 No_clan
Cotton_A_25157_CDS 22 109 21 109 PF07911.13 DUF1677 Family 2 89 89 118.7 1.1e-34 1 No_clan
Cotton_A_38851_CDS 48 110 48 110 PF00226.31 DnaJ Domain 1 63 63 63.3 1.7e-17 1 CL0392
Cotton_A_38851_CDS 135 189 135 189 PF13370.6 Fer4_13 Domain 1 58 58 54.8 1e-14 1 CL0344
Cotton_A_07670_CDS 10 151 10 151 PF02792.14 Mago_nashi Family 1 142 142 265.9 8.2e-80 1 No_clan
Cotton_A_30373_CDS 40 531 40 533 PF00118.24 Cpn60_TCP1 Family 1 488 491 523.2 6e-157 1 No_clan
Cotton_A_37022_CDS 92 116 61 116 PF03765.15 CRAL_TRIO_N Domain 30 54 54 29.9 4.7e-07 1 CL0214
Cotton_A_37022_CDS 137 289 135 289 PF00650.20 CRAL_TRIO Domain 3 159 159 125.3 1.7e-36 1 CL0512
Cotton_A_09911_CDS 99 253 98 255 PF03634.13 TCP Family 2 154 156 151.2 3.4e-44 1 No_clan
Cotton_A_05739_CDS 79 153 75 156 PF12037.8 DUF3523 Family 5 79 265 81.9 4.8e-23 1 No_clan
Cotton_A_05739_CDS 154 308 152 308 PF12037.8 DUF3523 Family 117 265 265 211.8 1.1e-62 1 No_clan
Cotton_A_05739_CDS 375 501 375 502 PF00004.29 AAA Domain 1 131 132 81.7 5.9e-23 1 CL0023
Cotton_A_28770_CDS 7 80 5 80 PF04969.16 CS Domain 3 76 76 32.9 1e-07 1 CL0190
Cotton_A_34249_CDS 58 223 56 225 PF05042.13 Caleosin Family 3 168 170 231.3 6e-69 1 CL0220
Cotton_A_23073_CDS 66 324 66 324 PF00069.25 Pkinase Domain 1 264 264 255.9 3.9e-76 1 CL0016
Cotton_A_23073_CDS 372 431 369 433 PF13499.6 EF-hand_7 Domain 4 69 71 38.6 1.1e-09 1 CL0220
Cotton_A_23073_CDS 441 504 440 505 PF13499.6 EF-hand_7 Domain 2 70 71 44.3 1.8e-11 1 CL0220
Cotton_A_26320_CDS 46 220 46 220 PF14543.6 TAXi_N Domain 1 178 178 114.3 7.1e-33 1 CL0129
Cotton_A_26320_CDS 247 406 247 407 PF14541.6 TAXi_C Domain 1 160 161 177.7 1.4e-52 1 CL0129
Cotton_A_25751_CDS 44 88 40 88 PF13855.6 LRR_8 Repeat 16 61 61 38.0 9.9e-10 1 CL0022
Cotton_A_25751_CDS 150 207 138 208 PF13855.6 LRR_8 Repeat 3 60 61 36.9 2.3e-09 1 CL0022
Cotton_A_25751_CDS 246 261 246 262 PF13516.6 LRR_6 Repeat 3 18 24 9.9 0.83 1 CL0022
Cotton_A_25751_CDS 339 355 338 356 PF13516.6 LRR_6 Repeat 2 18 24 13.2 0.07 1 CL0022
Cotton_A_25751_CDS 514 806 510 807 PF07714.17 Pkinase_Tyr Domain 5 258 259 115.5 2.4e-33 1 CL0016
Cotton_A_31831_CDS 174 247 174 248 PF03110.14 SBP Domain 1 74 75 105.9 9.8e-31 1 No_clan
Cotton_A_24487_CDS 30 56 30 57 PF05678.14 VQ Motif 1 27 28 39.8 2.2e-10 1 No_clan
Cotton_A_21652_CDS 66 172 66 172 PF01453.24 B_lectin Domain 1 105 105 128.9 1e-37 1 No_clan
Cotton_A_21652_CDS 204 310 204 312 PF00954.20 S_locus_glycop Domain 1 109 111 96.4 1.4e-27 1 No_clan
Cotton_A_21652_CDS 335 401 335 401 PF08276.11 PAN_2 Domain 1 67 67 74.5 5.2e-21 1 CL0168
Cotton_A_21652_CDS 503 613 482 680 PF00069.25 Pkinase Domain 92 196 264 90.1 1.4e-25 1 CL0016
Cotton_A_10858_CDS 181 299 180 300 PF02893.20 GRAM Domain 2 112 114 78.8 2.6e-22 1 CL0266
Cotton_A_25673_CDS 91 502 91 502 PF01603.20 B56 Family 1 415 415 645.2 4.4e-194 1 CL0020
Cotton_A_22114_CDS 11 139 8 139 PF04535.12 DUF588 Domain 4 150 150 78.8 3.4e-22 1 CL0396
Cotton_A_07389_CDS 12 411 12 412 PF00464.19 SHMT Domain 1 398 399 616.2 1.8e-185 1 CL0061
Cotton_A_39601_CDS 154 300 153 300 PF16486.5 ArgoN Domain 3 138 138 88.9 4.4e-25 1 No_clan
Cotton_A_39601_CDS 311 359 310 360 PF08699.10 ArgoL1 Domain 2 51 52 62.3 2.5e-17 1 No_clan
Cotton_A_39601_CDS 372 494 372 495 PF02170.22 PAZ Domain 1 136 137 80.6 8.8e-23 1 CL0638
Cotton_A_39601_CDS 658 964 656 967 PF02171.17 Piwi Family 3 299 302 320.9 7.7e-96 1 CL0219
Cotton_A_19509_CDS 61 149 60 150 PF00564.24 PB1 Domain 2 83 84 63.5 1.3e-17 1 CL0072
Cotton_A_16893_CDS 17 90 7 127 PF18052.1 Rx_N Domain 11 84 93 44.4 1.5e-11 1 No_clan
Cotton_A_16893_CDS 167 383 165 392 PF00931.22 NB-ARC Domain 5 224 252 167.1 3.8e-49 1 CL0023
Cotton_A_16526_CDS 44 346 44 379 PF00450.22 Peptidase_S10 Domain 1 304 419 308.6 9.2e-92 1 CL0028
Cotton_A_18960_CDS 343 376 342 376 PF00806.19 PUF Repeat 2 34 35 22.5 6.1e-05 1 CL0020
Cotton_A_28795_CDS 219 339 202 349 PF00350.23 Dynamin_N Domain 57 159 168 86.1 2.8e-24 1 CL0023
Cotton_A_04166_CDS 221 403 217 411 PF01416.20 PseudoU_synth_1 Domain 5 96 108 29.7 6.9e-07 1 CL0649
Cotton_A_22347_CDS 257 391 249 408 PF00201.18 UDPGT Family 263 382 499 74.1 1e-20 1 CL0113
Cotton_A_26801_CDS 88 218 86 218 PF00295.17 Glyco_hydro_28 Domain 123 251 325 128.1 3.8e-37 1 CL0268
Cotton_A_06654_CDS 9 100 9 102 PF11605.8 Vps36_ESCRT-II Family 1 89 92 53.7 1.8e-14 1 CL0266
Cotton_A_06654_CDS 191 415 191 416 PF04157.16 EAP30 Family 1 235 236 143.6 5.8e-42 1 CL0123
Cotton_A_29250_CDS 2 176 1 186 PF01928.21 CYTH Domain 3 161 179 81.5 6.6e-23 1 CL0273
Cotton_A_26574_CDS 221 299 188 299 PF00583.25 Acetyltransf_1 Family 35 117 117 35.8 7.6e-09 1 CL0257
Cotton_A_26574_CDS 424 505 421 506 PF00439.25 Bromodomain Domain 4 83 84 77.2 7.8e-22 1 No_clan
Cotton_A_08345_CDS 2 103 1 110 PF16050.5 CDC73_N Family 3 108 295 70.1 1.9e-19 1 No_clan
Cotton_A_08345_CDS 250 406 248 406 PF05179.14 CDC73_C Domain 4 157 157 164.6 1.3e-48 1 CL0023
Cotton_A_15394_CDS 37 169 37 181 PF00685.27 Sulfotransfer_1 Domain 1 156 267 91.0 8.4e-26 1 CL0023
Cotton_A_18771_CDS 5 52 4 53 PF00249.31 Myb_DNA-binding Domain 2 45 46 32.4 7.9e-08 1 CL0123
Cotton_A_09169_CDS 13 111 11 125 PF01412.18 ArfGap Domain 3 105 117 119.1 1e-34 1 No_clan
Cotton_A_38025_CDS 54 234 53 234 PF00227.26 Proteasome Domain 3 190 190 165.5 9.2e-49 1 CL0052
Cotton_A_07121_CDS 3 68 1 71 PF07731.14 Cu-oxidase_2 Domain 71 134 137 42.5 5.1e-11 1 CL0026
Cotton_A_15885_CDS 53 123 9 123 PF02519.14 Auxin_inducible Family 19 90 90 58.8 4.4e-16 1 No_clan
Cotton_A_23586_CDS 112 631 111 632 PF07944.12 Glyco_hydro_127 Family 2 518 519 419.4 1.8e-125 1 CL0059
Cotton_A_22063_CDS 145 202 145 202 PF03106.15 WRKY Domain 1 59 59 93.9 5e-27 1 CL0274
Cotton_A_10929_CDS 189 222 188 222 PF00806.19 PUF Repeat 2 35 35 29.1 4.7e-07 1 CL0020
Cotton_A_10929_CDS 226 258 224 258 PF00806.19 PUF Repeat 3 35 35 33.2 2.5e-08 1 CL0020
Cotton_A_10929_CDS 339 364 336 370 PF00806.19 PUF Repeat 4 29 35 20.8 0.00021 1 CL0020
Cotton_A_10929_CDS 409 442 408 442 PF00806.19 PUF Repeat 2 35 35 27.1 2e-06 1 CL0020
Cotton_A_33598_CDS 32 129 32 131 PF00223.19 PsaA_PsaB Family 1 100 718 151.7 2.4e-44 1 No_clan
Cotton_A_33598_CDS 131 340 128 340 PF00223.19 PsaA_PsaB Family 417 629 718 326.8 2.6e-97 1 No_clan
Cotton_A_33598_CDS 338 401 337 417 PF00223.19 PsaA_PsaB Family 62 124 718 56.1 2e-15 1 No_clan
Cotton_A_33598_CDS 438 521 413 522 PF00223.19 PsaA_PsaB Family 234 299 718 93.8 7.9e-27 1 No_clan
Cotton_A_20819_CDS 34 95 34 95 PF00226.31 DnaJ Domain 1 63 63 83.5 8.2e-24 1 CL0392
Cotton_A_27292_CDS 13 95 8 96 PF14368.6 LTP_2 Family 5 96 97 26.0 7.5e-06 1 CL0482
Cotton_A_12180_CDS 1 164 1 164 PF02485.21 Branch Family 71 247 247 188.8 1.2e-55 1 CL0110
Cotton_A_18315_CDS 6 167 5 167 PF13967.6 RSN1_TM Family 2 156 156 138.6 1.4e-40 1 No_clan
Cotton_A_18315_CDS 188 342 188 343 PF14703.6 PHM7_cyt Domain 1 175 176 119.6 1.7e-34 1 CL0221
Cotton_A_18315_CDS 355 622 354 622 PF02714.15 RSN1_7TM Family 2 274 274 240.7 1.8e-71 1 CL0416
Cotton_A_08473_CDS 55 92 54 92 PF13923.6 zf-C3HC4_2 Domain 2 40 40 41.4 9.2e-11 1 CL0229
Cotton_A_08473_CDS 458 495 457 496 PF00400.32 WD40 Repeat 2 37 38 17.8 0.0045 1 CL0186
Cotton_A_08473_CDS 544 580 543 580 PF00400.32 WD40 Repeat 2 38 38 21.0 0.00043 1 CL0186
Cotton_A_06868_CDS 71 162 71 172 PF01453.24 B_lectin Domain 1 92 105 65.0 7.3e-18 1 No_clan
Cotton_A_06868_CDS 230 311 202 314 PF00954.20 S_locus_glycop Domain 29 108 111 30.9 3e-07 1 No_clan
Cotton_A_06868_CDS 493 753 490 756 PF00069.25 Pkinase Domain 4 258 264 177.6 2.9e-52 1 CL0016
Cotton_A_32498_CDS 65 201 64 201 PF04819.12 DUF716 Family 2 138 138 162.2 5.1e-48 1 No_clan
Cotton_A_17489_CDS 1 22 1 23 PF04758.14 Ribosomal_S30 Family 36 57 58 26.3 6.1e-06 1 No_clan
Cotton_A_21536_CDS 150 193 147 193 PF02234.19 CDI Family 5 49 49 58.4 5.7e-16 1 No_clan
Cotton_A_20521_CDS 161 468 154 493 PF03062.19 MBOAT Family 8 318 348 130.2 1.1e-37 1 CL0517
Cotton_A_33426_CDS 145 377 145 427 PF00069.25 Pkinase Domain 1 212 264 60.4 1.7e-16 1 CL0016
Cotton_A_04795_CDS 1 300 1 300 PF00231.19 ATP-synt Domain 22 279 279 261.1 1.5e-77 1 No_clan
Cotton_A_07256_CDS 198 222 198 222 PF12874.7 zf-met Domain 1 25 25 31.1 2.1e-07 1 CL0361
Cotton_A_07256_CDS 304 328 304 328 PF12874.7 zf-met Domain 1 25 25 25.3 1.4e-05 1 CL0361
Cotton_A_33738_CDS 34 117 34 125 PF01190.17 Pollen_Ole_e_I Family 1 89 99 43.3 3.7e-11 1 CL0287
Cotton_A_39037_CDS 38 118 38 120 PF04873.13 EIN3 Family 1 84 252 110.9 6.2e-32 1 No_clan
Cotton_A_39037_CDS 254 286 249 286 PF04873.13 EIN3 Family 220 252 252 29.8 3.5e-07 1 No_clan
Cotton_A_31446_CDS 14 392 14 392 PF03140.15 DUF247 Family 1 397 397 366.1 2.6e-109 1 No_clan
Cotton_A_14779_CDS 190 237 188 237 PF00010.26 HLH Domain 4 53 53 27.6 2.1e-06 1 No_clan
Cotton_A_01829_CDS 38 178 13 235 PF02153.17 PDH Family 45 190 258 62.3 3.4e-17 1 CL0063
Cotton_A_21953_CDS 136 193 136 193 PF03106.15 WRKY Domain 1 59 59 91.4 3.1e-26 1 CL0274
Cotton_A_38382_CDS 106 146 102 146 PF01344.25 Kelch_1 Repeat 8 46 46 26.8 2.9e-06 1 CL0186
Cotton_A_38382_CDS 149 194 148 194 PF01344.25 Kelch_1 Repeat 2 46 46 32.9 3.5e-08 1 CL0186
Cotton_A_01413_CDS 29 605 29 608 PF01602.20 Adaptin_N Family 1 521 524 274.5 1.5e-81 1 CL0020
Cotton_A_31460_CDS 94 255 94 271 PF04893.17 Yip1 Domain 1 166 172 57.2 1.7e-15 1 CL0112
Cotton_A_10417_CDS 82 150 82 162 PF00917.26 MATH Domain 1 67 113 29.8 5.4e-07 1 CL0389
Cotton_A_11235_CDS 14 47 13 47 PF02037.27 SAP Family 2 35 35 38.1 9e-10 1 CL0306
Cotton_A_11235_CDS 661 703 650 706 PF16294.5 RSB_motif Motif 56 98 102 51.4 9.9e-14 1 No_clan
Cotton_A_07851_CDS 34 84 31 93 PF00170.21 bZIP_1 Family 5 55 64 40.5 2.1e-10 1 CL0018
Cotton_A_31539_CDS 174 199 172 200 PF01535.20 PPR Family 5 30 31 17.0 0.0051 1 CL0020
Cotton_A_31539_CDS 240 264 239 267 PF01535.20 PPR Family 2 26 31 9.8 0.99 1 CL0020
Cotton_A_31539_CDS 275 303 274 304 PF01535.20 PPR Family 2 30 31 11.4 0.3 1 CL0020
Cotton_A_31539_CDS 376 424 376 425 PF13041.6 PPR_2 Repeat 1 49 50 38.1 1.3e-09 1 CL0020
Cotton_A_31539_CDS 524 548 520 549 PF01535.20 PPR Family 6 30 31 14.2 0.039 1 CL0020
Cotton_A_31539_CDS 578 623 576 625 PF13812.6 PPR_3 Repeat 5 50 63 15.7 0.011 1 CL0020
Cotton_A_31539_CDS 660 704 658 704 PF13041.6 PPR_2 Repeat 6 50 50 31.5 1.5e-07 1 CL0020
Cotton_A_31539_CDS 794 841 793 841 PF13041.6 PPR_2 Repeat 2 50 50 36.6 3.8e-09 1 CL0020
Cotton_A_17633_CDS 46 308 42 312 PF07714.17 Pkinase_Tyr Domain 5 255 259 163.7 4.9e-48 1 CL0016
Cotton_A_19484_CDS 46 110 45 111 PF00035.26 dsrm Domain 2 66 67 55.4 7.6e-15 1 CL0196
Cotton_A_19484_CDS 132 194 131 197 PF00035.26 dsrm Domain 2 64 67 46.3 5.2e-12 1 CL0196
Cotton_A_01779_CDS 63 185 62 187 PF10374.9 EST1 Family 2 134 136 65.7 6.5e-18 1 CL0020
Cotton_A_01779_CDS 199 534 199 535 PF10373.9 EST1_DNA_bind Family 1 281 282 228.0 1.6e-67 1 CL0020
Cotton_A_25321_CDS 9 56 9 56 PF00304.20 Gamma-thionin Domain 1 47 47 59.2 3.5e-16 1 CL0054
Cotton_A_11620_CDS 22 86 22 86 PF05641.12 Agenet Domain 1 61 61 28.3 1.8e-06 1 CL0049
Cotton_A_11620_CDS 188 248 187 248 PF05641.12 Agenet Domain 3 61 61 40.7 2.4e-10 1 CL0049
Cotton_A_11620_CDS 263 318 259 319 PF05641.12 Agenet Domain 5 60 61 20.9 0.00038 1 CL0049
Cotton_A_15037_CDS 373 510 372 510 PF04146.15 YTH Domain 2 166 166 138.6 1.8e-40 1 CL0178
Cotton_A_26838_CDS 74 158 74 158 PF03124.14 EXS Family 245 331 331 90.4 1.3e-25 1 CL0182
Cotton_A_29005_CDS 20 111 20 111 PF16573.5 CLP1_N Family 1 92 92 107.7 2.6e-31 1 No_clan
Cotton_A_29005_CDS 131 319 131 319 PF16575.5 CLP1_P Domain 1 188 188 234.3 8.9e-70 1 CL0023
Cotton_A_29005_CDS 324 435 324 435 PF06807.14 Clp1 Family 1 117 117 108.0 3.6e-31 1 No_clan
Cotton_A_40942_CDS 77 196 75 207 PF03004.14 Transposase_24 Family 3 129 142 51.1 1.5e-13 1 No_clan
Cotton_A_27979_CDS 13 354 13 356 PF01070.18 FMN_dh Domain 1 346 348 454.5 2.2e-136 1 CL0036
Cotton_A_28765_CDS 33 112 33 114 PF02298.17 Cu_bind_like Domain 1 82 84 84.3 4.5e-24 1 CL0026
Cotton_A_08323_CDS 87 204 83 218 PF00650.20 CRAL_TRIO Domain 5 127 159 60.4 1.6e-16 1 CL0512
Cotton_A_11448_CDS 57 344 55 344 PF15491.6 CTC1_2 Family 3 293 293 316.4 1.7e-94 1 CL0586
Cotton_A_36341_CDS 60 469 41 469 PF00330.20 Aconitase Family 16 461 461 257.1 3.5e-76 1 No_clan
Cotton_A_32288_CDS 39 94 37 95 PF02701.15 zf-Dof Family 3 58 59 112.2 9.3e-33 1 No_clan
Cotton_A_00946_CDS 91 227 91 229 PF01565.23 FAD_binding_4 Domain 1 136 139 91.0 5.4e-26 1 CL0077
Cotton_A_00946_CDS 480 537 480 537 PF08031.12 BBE Domain 1 46 46 66.3 1.8e-18 1 CL0277
Cotton_A_20512_CDS 24 534 23 534 PF02516.14 STT3 Family 2 488 488 375.2 5.5e-112 1 CL0111
Cotton_A_03053_CDS 83 251 83 251 PF06925.11 MGDG_synth Family 1 169 169 203.4 2.6e-60 1 CL0113
Cotton_A_03053_CDS 280 420 277 442 PF04101.16 Glyco_tran_28_C Domain 4 146 167 34.6 1.7e-08 1 CL0113
Cotton_A_37316_CDS 14 142 14 142 PF05512.11 AWPM-19 Family 1 142 142 171.5 1.1e-50 1 No_clan
Cotton_A_19514_CDS 146 189 141 190 PF00010.26 HLH Domain 6 52 53 34.6 1.4e-08 1 No_clan
Cotton_A_27581_CDS 160 278 159 280 PF02893.20 GRAM Domain 2 112 114 92.8 1.2e-26 1 CL0266
Cotton_A_02553_CDS 60 168 51 168 PF03099.19 BPL_LplA_LipB Domain 14 131 131 30.9 2.2e-07 1 CL0040
Cotton_A_05091_CDS 31 209 30 210 PF00722.21 Glyco_hydro_16 Domain 2 176 177 187.1 1.9e-55 1 CL0004
Cotton_A_05091_CDS 244 289 243 289 PF06955.12 XET_C Family 4 47 47 62.7 2.1e-17 1 CL0004
Cotton_A_09715_CDS 132 243 132 243 PF16275.5 SF1-HH Domain 1 113 113 96.4 1.2e-27 1 No_clan
Cotton_A_09715_CDS 262 335 250 336 PF00013.29 KH_1 Domain 9 65 66 28.0 1.5e-06 1 CL0007
Cotton_A_09715_CDS 483 552 483 553 PF00076.22 RRM_1 Domain 1 69 70 68.4 3.4e-19 1 CL0221
Cotton_A_33082_CDS 204 365 204 366 PF01764.25 Lipase_3 Family 1 141 142 135.6 1e-39 1 CL0028
Cotton_A_07595_CDS 51 379 51 391 PF04563.15 RNA_pol_Rpb2_1 Family 1 169 203 150.8 3.4e-44 1 No_clan
Cotton_A_07595_CDS 198 364 198 365 PF04561.14 RNA_pol_Rpb2_2 Domain 1 189 190 64.3 1.1e-17 1 No_clan
Cotton_A_07595_CDS 437 501 437 501 PF04565.16 RNA_pol_Rpb2_3 Domain 1 68 68 62.4 3.4e-17 1 No_clan
Cotton_A_07595_CDS 538 602 538 602 PF04566.13 RNA_pol_Rpb2_4 Domain 1 62 62 77.2 8.7e-22 1 No_clan
Cotton_A_07595_CDS 623 663 623 663 PF04567.17 RNA_pol_Rpb2_5 Domain 1 58 58 34.4 2.4e-08 1 No_clan
Cotton_A_07595_CDS 671 1067 670 1067 PF00562.28 RNA_pol_Rpb2_6 Domain 2 390 390 371.6 4.6e-111 1 CL0410
Cotton_A_07595_CDS 1069 1147 1069 1147 PF04560.20 RNA_pol_Rpb2_7 Domain 1 73 87 82.0 3e-23 1 No_clan
Cotton_A_21141_CDS 2 33 1 54 PF18052.1 Rx_N Domain 56 87 93 29.9 5.2e-07 1 No_clan
Cotton_A_19061_CDS 126 169 125 169 PF13639.6 zf-RING_2 Domain 2 44 44 50.4 2e-13 1 CL0229
Cotton_A_11222_CDS 8 120 7 120 PF13456.6 RVT_3 Domain 2 115 124 70.4 1.1e-19 1 CL0219
Cotton_A_29337_CDS 28 78 27 78 PF00249.31 Myb_DNA-binding Domain 2 46 46 31.9 1.1e-07 1 CL0123
Cotton_A_29337_CDS 124 171 124 171 PF14379.6 Myb_CC_LHEQLE Family 1 48 48 78.0 3.2e-22 1 No_clan
Cotton_A_24673_CDS 202 444 202 444 PF04646.12 DUF604 Family 1 256 256 333.9 6e-100 1 CL0110
Cotton_A_16528_CDS 107 178 67 191 PF07779.12 Cas1_AcylT Domain 121 190 474 70.9 9.5e-20 1 CL0316
Cotton_A_36385_CDS 1 409 1 411 PF01593.24 Amino_oxidase Domain 1 450 452 314.3 1.8e-93 1 CL0063
Cotton_A_21265_CDS 45 158 45 158 PF01661.21 Macro Domain 1 118 118 99.4 1.3e-28 1 CL0223
Cotton_A_32373_CDS 132 399 127 399 PF02784.16 Orn_Arg_deC_N Domain 6 247 247 131.6 3e-38 1 CL0036
Cotton_A_20052_CDS 104 247 102 248 PF01699.24 Na_Ca_ex Family 3 150 151 85.4 3.8e-24 1 No_clan
Cotton_A_20052_CDS 402 548 401 555 PF01699.24 Na_Ca_ex Family 2 146 151 78.0 7.2e-22 1 No_clan
Cotton_A_05363_CDS 2 149 1 151 PF03398.14 Ist1 Family 7 162 164 155.5 1.1e-45 1 No_clan
Cotton_A_10181_CDS 265 355 264 358 PF08295.12 Sin3_corepress Domain 2 95 98 36.9 2.8e-09 1 No_clan
Cotton_A_09123_CDS 55 136 54 136 PF14547.6 Hydrophob_seed Domain 2 84 85 96.3 8.9e-28 1 CL0482
Cotton_A_30201_CDS 25 346 25 346 PF00225.23 Kinesin Domain 1 333 333 289.0 3.8e-86 1 CL0023
Cotton_A_00405_CDS 35 101 35 104 PF00076.22 RRM_1 Domain 1 66 70 75.6 2e-21 1 CL0221
Cotton_A_21767_CDS 37 150 36 152 PF07732.15 Cu-oxidase_3 Domain 2 117 119 123.7 3.7e-36 1 CL0026
Cotton_A_21767_CDS 163 299 162 300 PF00394.22 Cu-oxidase Domain 2 158 159 141.7 2e-41 1 CL0026
Cotton_A_21767_CDS 381 516 380 520 PF07731.14 Cu-oxidase_2 Domain 2 133 137 91.7 3.2e-26 1 CL0026
Cotton_A_30401_CDS 59 259 56 326 PF00069.25 Pkinase Domain 4 198 264 161.3 2.9e-47 1 CL0016
Cotton_A_02533_CDS 54 245 53 248 PF00149.28 Metallophos Domain 2 201 204 122.2 3.9e-35 1 CL0163
Cotton_A_33629_CDS 21 165 20 174 PF00582.26 Usp Domain 5 134 141 41.9 1.3e-10 1 CL0039
Cotton_A_33629_CDS 501 753 499 777 PF00069.25 Pkinase Domain 3 254 264 140.2 7.9e-41 1 CL0016
Cotton_A_26109_CDS 53 141 50 142 PF12796.7 Ank_2 Repeat 5 82 83 39.6 5.9e-10 1 CL0465
Cotton_A_26109_CDS 179 204 178 210 PF00023.30 Ank Repeat 2 26 32 16.7 0.0072 1 CL0465
Cotton_A_26109_CDS 206 254 200 254 PF13857.6 Ank_5 Repeat 10 56 56 31.7 1.3e-07 1 CL0465
Cotton_A_26109_CDS 390 517 386 519 PF01529.20 DHHC Family 6 132 134 111.4 3.3e-32 1 No_clan
Cotton_A_12936_CDS 97 253 96 254 PF01699.24 Na_Ca_ex Family 4 150 151 73.8 1.4e-20 1 No_clan
Cotton_A_12936_CDS 283 423 282 427 PF01699.24 Na_Ca_ex Family 2 147 151 65.6 4.6e-18 1 No_clan
Cotton_A_10500_CDS 112 198 85 198 PF00903.25 Glyoxalase Domain 42 128 128 49.6 4.2e-13 1 CL0104
Cotton_A_23502_CDS 67 412 65 415 PF02458.15 Transferase Family 76 431 434 217.0 3.6e-64 1 CL0149
Cotton_A_33213_CDS 158 424 155 426 PF00069.25 Pkinase Domain 4 260 264 156.1 1.1e-45 1 CL0016
Cotton_A_14760_CDS 97 231 97 232 PF03364.20 Polyketide_cyc Family 1 129 130 70.8 1.2e-19 1 CL0209
Cotton_A_14760_CDS 335 466 335 466 PF03364.20 Polyketide_cyc Family 1 130 130 77.3 1.1e-21 1 CL0209
Cotton_A_26806_CDS 51 525 20 551 PF03999.12 MAP65_ASE1 Family 15 469 598 266.2 6.6e-79 1 No_clan
Cotton_A_19618_CDS 1 76 1 81 PF00107.26 ADH_zinc_N Family 53 125 130 34.2 2.1e-08 1 CL0063
Cotton_A_19335_CDS 17 76 17 76 PF00137.21 ATP-synt_C Family 1 60 60 52.1 6.2e-14 1 No_clan
Cotton_A_19335_CDS 97 155 96 155 PF00137.21 ATP-synt_C Family 2 60 60 72.2 3.2e-20 1 No_clan
Cotton_A_08348_CDS 24 331 23 332 PF02574.16 S-methyl_trans Family 2 267 268 260.0 3.2e-77 1 No_clan
Cotton_A_22105_CDS 260 502 260 503 PF08323.11 Glyco_transf_5 Domain 1 243 244 217.3 2.6e-64 1 CL0113
Cotton_A_22105_CDS 561 704 554 715 PF00534.20 Glycos_transf_1 Family 12 152 172 58.5 5.7e-16 1 CL0113
Cotton_A_00473_CDS 11 157 11 159 PF00685.27 Sulfotransfer_1 Domain 1 166 267 120.5 8.6e-35 1 CL0023
Cotton_A_30067_CDS 42 326 42 326 PF00069.25 Pkinase Domain 1 264 264 212.3 7.5e-63 1 CL0016
Cotton_A_07373_CDS 12 120 10 123 PF00572.18 Ribosomal_L13 Family 3 122 125 35.1 1.3e-08 1 No_clan
Cotton_A_31339_CDS 2 117 1 129 PF00067.22 p450 Domain 325 439 463 99.0 2.6e-28 1 No_clan
Cotton_A_33677_CDS 26 111 1 112 PF07859.13 Abhydrolase_3 Domain 132 210 211 26.6 4.7e-06 1 CL0028
Cotton_A_39532_CDS 51 367 51 367 PF00251.20 Glyco_hydro_32N Domain 1 305 305 343.0 1.8e-102 1 CL0143
Cotton_A_39532_CDS 370 563 370 563 PF08244.12 Glyco_hydro_32C Domain 1 158 158 97.8 5.9e-28 1 CL0004
Cotton_A_32249_CDS 13 105 12 117 PF04043.15 PMEI Domain 2 98 154 46.5 4.7e-12 1 No_clan
Cotton_A_34085_CDS 3 222 1 224 PF00481.21 PP2C Family 44 256 258 175.4 1.7e-51 1 CL0238
Cotton_A_24628_CDS 145 263 145 264 PF00622.28 SPRY Family 1 119 120 91.4 4.1e-26 1 CL0004
Cotton_A_24628_CDS 769 957 712 960 PF10408.9 Ufd2P_core Family 185 385 625 28.0 8.1e-07 1 No_clan
Cotton_A_26998_CDS 1 59 1 59 PF04783.12 DUF630 Family 1 59 59 86.0 1.4e-24 1 No_clan
Cotton_A_26998_CDS 380 684 380 685 PF04782.12 DUF632 Family 1 309 310 318.0 6.5e-95 1 No_clan
Cotton_A_35768_CDS 1 54 1 54 PF00450.22 Peptidase_S10 Domain 9 62 419 63.3 2.6e-17 1 CL0028
Cotton_A_11359_CDS 105 284 104 284 PF11833.8 CPP1-like Family 2 197 197 171.1 2.2e-50 1 No_clan
Cotton_A_12628_CDS 71 243 70 243 PF06351.11 Allene_ox_cyc Family 2 175 175 308.2 1.4e-92 1 CL0650
Cotton_A_10002_CDS 28 66 25 66 PF08263.12 LRRNT_2 Family 4 41 41 40.6 2.3e-10 1 No_clan
Cotton_A_10002_CDS 365 630 362 633 PF07714.17 Pkinase_Tyr Domain 5 256 259 72.2 3.9e-20 1 CL0016
Cotton_A_17857_CDS 27 119 25 120 PF00564.24 PB1 Domain 3 83 84 43.5 2.2e-11 1 CL0072
Cotton_A_33092_CDS 371 617 364 634 PF00118.24 Cpn60_TCP1 Family 138 374 491 108.2 4.1e-31 1 No_clan
Cotton_A_33092_CDS 1456 1622 1447 1626 PF01504.18 PIP5K Family 10 168 274 113.1 1.3e-32 1 CL0016
Cotton_A_37851_CDS 67 116 66 117 PF00847.20 AP2 Domain 2 53 54 53.6 1.9e-14 1 CL0081
Cotton_A_37522_CDS 20 47 20 50 PF13405.6 EF-hand_6 Domain 1 29 31 27.9 1.2e-06 1 CL0220
Cotton_A_12560_CDS 42 258 42 258 PF00314.17 Thaumatin Domain 1 214 214 249.8 2.1e-74 1 CL0293
Cotton_A_12560_CDS 277 369 269 379 PF13947.6 GUB_WAK_bind Domain 7 98 106 36.8 5.3e-09 1 No_clan
Cotton_A_12560_CDS 399 475 376 476 PF14380.6 WAK_assoc Domain 26 103 104 64.5 1.2e-17 1 No_clan
Cotton_A_12560_CDS 570 842 568 842 PF07714.17 Pkinase_Tyr Domain 3 259 259 162.0 1.6e-47 1 CL0016
Cotton_A_07758_CDS 52 325 50 327 PF00069.25 Pkinase Domain 3 260 264 178.9 1.2e-52 1 CL0016
Cotton_A_21526_CDS 118 167 117 168 PF00847.20 AP2 Domain 2 53 54 52.2 5.1e-14 1 CL0081
Cotton_A_13685_CDS 65 241 65 242 PF01397.21 Terpene_synth Domain 1 191 192 168.4 1.4e-49 1 No_clan
Cotton_A_13685_CDS 273 538 273 538 PF03936.16 Terpene_synth_C Domain 1 267 267 306.6 1.3e-91 1 CL0613
Cotton_A_17765_CDS 440 473 437 474 PF00400.32 WD40 Repeat 5 37 38 30.8 3.6e-07 1 CL0186
Cotton_A_17765_CDS 591 643 571 673 PF12894.7 ANAPC4_WD40 Repeat 36 89 92 22.4 0.00011 1 CL0186
Cotton_A_17765_CDS 715 754 709 755 PF00400.32 WD40 Repeat 7 36 38 17.8 0.0046 1 CL0186
Cotton_A_35104_CDS 44 90 43 91 PF00010.26 HLH Domain 3 52 53 43.1 3.1e-11 1 No_clan
Cotton_A_32625_CDS 30 144 30 144 PF16752.5 TBCC_N Domain 1 116 116 102.4 2e-29 1 No_clan
Cotton_A_32625_CDS 202 318 200 318 PF07986.12 TBCC Domain 3 120 120 128.6 9.8e-38 1 CL0391
Cotton_A_10010_CDS 24 78 20 78 PF07765.12 KIP1 Family 21 74 74 68.5 4e-19 1 No_clan
Cotton_A_17402_CDS 12 101 8 129 PF18052.1 Rx_N Domain 1 84 93 82.9 1.5e-23 1 No_clan
Cotton_A_17402_CDS 192 400 188 411 PF00931.22 NB-ARC Domain 5 218 252 151.9 1.7e-44 1 CL0023
Cotton_A_04481_CDS 60 199 60 199 PF02365.15 NAM Family 1 126 126 85.8 4.4e-24 1 No_clan
Cotton_A_10708_CDS 114 196 112 197 PF15490.6 Ten1_2 Domain 30 117 118 84.0 6.2e-24 1 CL0021
Cotton_A_07640_CDS 2 179 1 197 PF00955.21 HCO3_cotransp Family 2 173 508 127.2 8.2e-37 1 CL0062
Cotton_A_07640_CDS 202 372 183 377 PF00955.21 HCO3_cotransp Family 246 411 508 86.1 2.4e-24 1 CL0062
Cotton_A_07640_CDS 460 550 456 551 PF00955.21 HCO3_cotransp Family 423 507 508 67.9 7.9e-19 1 CL0062
Cotton_A_27642_CDS 58 116 53 116 PF05498.11 RALF Family 6 65 65 23.3 9.5e-05 1 No_clan
Cotton_A_04668_CDS 4 255 3 255 PF00069.25 Pkinase Domain 2 264 264 183.5 4.9e-54 1 CL0016
Cotton_A_06377_CDS 31 90 31 90 PF02704.14 GASA Family 1 60 60 77.7 5.4e-22 1 No_clan
Cotton_A_02896_CDS 22 142 22 142 PF12507.8 HCMV_UL139 Family 1 121 121 140.7 2.7e-41 1 No_clan
Cotton_A_33138_CDS 28 270 25 273 PF01151.18 ELO Family 4 246 250 104.0 8.8e-30 1 No_clan
Cotton_A_28812_CDS 1 29 1 29 PF02788.16 RuBisCO_large_N Domain 92 120 120 25.9 9e-06 1 No_clan
Cotton_A_28812_CDS 39 99 39 101 PF00016.20 RuBisCO_large Domain 1 61 299 89.3 2.5e-25 1 No_clan
Cotton_A_00936_CDS 72 128 71 129 PF02701.15 zf-Dof Family 2 58 59 110.1 4e-32 1 No_clan
Cotton_A_31315_CDS 157 352 151 355 PF08491.10 SE Family 53 271 276 197.2 2.6e-58 1 CL0063
Cotton_A_19595_CDS 41 119 40 119 PF02298.17 Cu_bind_like Domain 1 84 84 88.7 1.9e-25 1 CL0026
Cotton_A_26233_CDS 272 450 269 455 PF00270.29 DEAD Domain 5 170 176 30.3 3.2e-07 1 CL0023
Cotton_A_26233_CDS 692 784 662 784 PF00271.31 Helicase_C Family 37 111 111 44.6 1.5e-11 1 CL0023
Cotton_A_26233_CDS 846 978 846 979 PF04408.23 HA2 Domain 1 107 108 79.0 2.8e-22 1 No_clan
Cotton_A_26233_CDS 1065 1153 1064 1154 PF07717.16 OB_NTP_bind Domain 2 82 83 54.8 8.8e-15 1 CL0021
Cotton_A_33436_CDS 29 149 22 154 PF00675.20 Peptidase_M16 Family 11 141 149 118.6 2.2e-34 1 CL0094
Cotton_A_33436_CDS 193 335 191 337 PF05193.21 Peptidase_M16_C Domain 4 148 183 53.2 3.6e-14 1 CL0094
Cotton_A_17710_CDS 11 140 1 140 PF00664.23 ABC_membrane Family 143 274 274 69.5 3.6e-19 1 CL0241
Cotton_A_17710_CDS 202 337 202 338 PF00005.27 ABC_tran Domain 1 136 137 66.8 2.7e-18 1 CL0023
Cotton_A_17710_CDS 487 732 487 762 PF00664.23 ABC_membrane Family 1 250 274 106.7 1.6e-30 1 CL0241
Cotton_A_17710_CDS 825 973 825 973 PF00005.27 ABC_tran Domain 1 137 137 97.6 8.6e-28 1 CL0023
Cotton_A_24608_CDS 64 295 61 297 PF04452.14 Methyltrans_RNA Family 4 224 226 148.3 2.1e-43 1 CL0098
Cotton_A_17113_CDS 9 442 8 445 PF02458.15 Transferase Family 2 431 434 334.5 7.8e-100 1 CL0149
Cotton_A_13911_CDS 128 418 128 418 PF10475.9 Vps54_N Family 1 291 291 311.8 4.3e-93 1 CL0295
Cotton_A_13911_CDS 869 1099 869 1099 PF10474.9 DUF2451 Family 2 233 233 234.6 1.3e-69 1 No_clan
Cotton_A_28964_CDS 7 92 6 93 PF03083.16 MtN3_slv Family 2 86 87 92.9 9.5e-27 1 CL0141
Cotton_A_28964_CDS 128 212 127 213 PF03083.16 MtN3_slv Family 2 86 87 95.8 1.2e-27 1 CL0141
Cotton_A_21517_CDS 75 125 66 129 PF00931.22 NB-ARC Domain 11 65 252 37.7 1.3e-09 1 CL0023
Cotton_A_21517_CDS 129 268 124 271 PF00931.22 NB-ARC Domain 104 250 252 84.1 8.6e-24 1 CL0023
Cotton_A_00741_CDS 123 177 123 177 PF12838.7 Fer4_7 Domain 1 52 52 51.7 9.7e-14 1 CL0344
Cotton_A_23807_CDS 1 59 1 59 PF01194.17 RNA_pol_N Domain 1 59 59 108.6 1.3e-31 1 No_clan
Cotton_A_06734_CDS 83 149 83 152 PF00076.22 RRM_1 Domain 1 66 70 45.9 3.7e-12 1 CL0221
Cotton_A_06734_CDS 176 244 176 247 PF00076.22 RRM_1 Domain 1 67 70 53.3 1.7e-14 1 CL0221
Cotton_A_25043_CDS 233 273 232 276 PF13920.6 zf-C3HC4_3 Domain 3 47 50 31.1 1.6e-07 1 CL0229
Cotton_A_22012_CDS 17 48 17 48 PF00467.29 KOW Family 1 32 32 36.2 3.7e-09 1 CL0107
Cotton_A_22012_CDS 51 106 50 116 PF17136.4 ribosomal_L24 Family 2 58 65 73.7 1.2e-20 1 No_clan
Cotton_A_00075_CDS 160 333 159 341 PF00931.22 NB-ARC Domain 2 179 252 143.0 8.7e-42 1 CL0023
Cotton_A_33728_CDS 10 251 10 253 PF12697.7 Abhydrolase_6 Domain 1 217 220 74.3 2.1e-20 1 CL0028
Cotton_A_21895_CDS 108 310 108 310 PF07816.11 DUF1645 Family 1 191 191 154.1 6.5e-45 1 No_clan
Cotton_A_03011_CDS 17 701 15 702 PF05817.14 Ribophorin_II Family 3 630 631 620.4 3.7e-186 1 No_clan
Cotton_A_31662_CDS 5 65 2 67 PF12776.7 Myb_DNA-bind_3 Domain 28 87 96 30.4 5.7e-07 1 CL0123
Cotton_A_05835_CDS 41 205 41 206 PF00350.23 Dynamin_N Domain 1 167 168 113.8 8.2e-33 1 CL0023
Cotton_A_05835_CDS 275 493 253 501 PF01031.20 Dynamin_M Family 53 273 285 78.2 5.8e-22 1 No_clan
Cotton_A_05835_CDS 576 693 573 694 PF00169.29 PH Domain 5 104 105 44.4 1.9e-11 1 CL0266
Cotton_A_05835_CDS 731 813 728 819 PF02212.18 GED Family 4 84 92 50.5 1.7e-13 1 No_clan
Cotton_A_38825_CDS 34 88 34 89 PF00118.24 Cpn60_TCP1 Family 1 53 491 38.6 5.1e-10 1 No_clan
Cotton_A_38497_CDS 70 180 69 181 PF00635.26 Motile_Sperm Domain 2 107 109 98.5 1.9e-28 1 CL0556
Cotton_A_14307_CDS 55 97 55 97 PF16711.5 SCAB-ABD Domain 1 43 43 80.5 5.9e-23 1 No_clan
Cotton_A_14307_CDS 101 269 101 269 PF16712.5 SCAB_CC Family 1 168 168 262.1 1.9e-78 1 No_clan
Cotton_A_14307_CDS 284 368 283 379 PF16709.5 SCAB-Ig Domain 2 86 98 124.3 1.6e-36 1 CL0159
Cotton_A_14307_CDS 367 469 363 469 PF17684.1 SCAB-PH Domain 6 108 108 166.9 1.4e-49 1 CL0266
Cotton_A_24612_CDS 90 429 90 439 PF00224.21 PK Family 1 337 348 282.9 3e-84 1 CL0151
Cotton_A_24612_CDS 458 557 458 567 PF02887.16 PK_C Domain 1 102 117 73.9 1.2e-20 1 No_clan
Cotton_A_30464_CDS 46 131 44 153 PF00085.20 Thioredoxin Domain 4 79 103 43.1 3.3e-11 1 CL0172
Cotton_A_30464_CDS 309 403 309 403 PF04777.13 Evr1_Alr Family 1 100 100 69.7 2.3e-19 1 No_clan
Cotton_A_38958_CDS 1 108 1 108 PF00332.18 Glyco_hydro_17 Domain 211 313 313 106.6 1.9e-30 1 CL0058
Cotton_A_29827_CDS 50 470 50 472 PF02897.15 Peptidase_S9_N Domain 1 412 414 355.6 3.1e-106 1 CL0186
Cotton_A_29827_CDS 532 746 531 747 PF00326.21 Peptidase_S9 Domain 2 210 212 217.3 1.6e-64 1 CL0028
Cotton_A_34787_CDS 9 352 7 352 PF01137.21 RTC Domain 3 222 222 174.0 2.5e-51 1 CL0290
Cotton_A_34787_CDS 183 299 183 299 PF05189.13 RTC_insert Domain 1 103 103 111.1 3.3e-32 1 No_clan
Cotton_A_23362_CDS 460 631 459 633 PF00270.29 DEAD Domain 2 174 176 166.2 6e-49 1 CL0023
Cotton_A_23362_CDS 669 777 667 777 PF00271.31 Helicase_C Family 3 111 111 98.2 3.5e-28 1 CL0023
Cotton_A_19103_CDS 128 150 126 150 PF12874.7 zf-met Domain 3 25 25 25.0 1.8e-05 1 CL0361
Cotton_A_19103_CDS 204 227 203 227 PF12874.7 zf-met Domain 2 25 25 22.6 9.7e-05 1 CL0361
Cotton_A_19103_CDS 267 290 266 290 PF12874.7 zf-met Domain 2 25 25 30.5 3.2e-07 1 CL0361
Cotton_A_19103_CDS 371 393 369 393 PF12874.7 zf-met Domain 3 25 25 30.0 4.6e-07 1 CL0361
Cotton_A_03626_CDS 96 143 95 145 PF02861.20 Clp_N Family 2 51 53 18.5 0.0016 1 No_clan
Cotton_A_03626_CDS 180 226 180 231 PF02861.20 Clp_N Family 1 47 53 38.2 1.2e-09 1 No_clan
Cotton_A_03626_CDS 315 425 314 453 PF00004.29 AAA Domain 2 99 132 37.9 2.1e-09 1 CL0023
Cotton_A_03626_CDS 458 558 458 564 PF17871.1 AAA_lid_9 Domain 1 99 104 95.3 1.8e-27 1 CL0671
Cotton_A_03626_CDS 656 831 656 831 PF07724.14 AAA_2 Domain 1 171 171 174.6 1.8e-51 1 CL0023
Cotton_A_03626_CDS 837 916 837 917 PF10431.9 ClpB_D2-small Domain 1 80 81 76.5 1.3e-21 1 CL0671
Cotton_A_02532_CDS 61 156 61 172 PF14226.6 DIOX_N Family 1 98 118 77.5 1.4e-21 1 CL0029
Cotton_A_02532_CDS 216 313 214 313 PF03171.20 2OG-FeII_Oxy Domain 7 101 101 93.3 1e-26 1 CL0029
Cotton_A_20649_CDS 48 91 34 97 PF04281.13 Tom22 Family 84 127 138 30.6 2.4e-07 1 No_clan
Cotton_A_25419_CDS 4 101 3 101 PF00438.20 S-AdoMet_synt_N Domain 2 99 99 146.8 2.4e-43 1 No_clan
Cotton_A_25419_CDS 117 238 117 238 PF02772.16 S-AdoMet_synt_M Domain 1 120 120 162.3 4.9e-48 1 No_clan
Cotton_A_25419_CDS 240 381 240 382 PF02773.16 S-AdoMet_synt_C Domain 1 137 138 207.7 6e-62 1 No_clan
Cotton_A_08480_CDS 6 104 5 110 PF03650.13 MPC Family 2 100 110 138.2 1.1e-40 1 CL0141
Cotton_A_00215_CDS 118 275 118 275 PF01556.18 DnaJ_C Domain 1 148 148 137.4 3.8e-40 1 No_clan
Cotton_A_14260_CDS 6 37 6 37 PF04068.15 RLI Family 1 35 35 51.3 7.5e-14 1 CL0344
Cotton_A_14260_CDS 49 71 48 71 PF00037.27 Fer4 Domain 2 24 24 34.1 1.5e-08 1 CL0344
Cotton_A_14260_CDS 102 244 100 245 PF00005.27 ABC_tran Domain 10 136 137 63.1 3.9e-17 1 CL0023
Cotton_A_14260_CDS 366 496 364 496 PF00005.27 ABC_tran Domain 3 137 137 62.7 5.1e-17 1 CL0023
Cotton_A_27891_CDS 74 266 73 266 PF13862.6 BCIP Family 2 206 206 189.4 6.3e-56 1 No_clan
Cotton_A_02626_CDS 15 61 4 61 PF02319.20 E2F_TDP Domain 19 71 71 62.3 3.3e-17 1 CL0123
Cotton_A_02626_CDS 77 176 77 177 PF16421.5 E2F_CC-MB Domain 1 94 95 119.7 5.2e-35 1 No_clan
Cotton_A_24750_CDS 33 85 33 85 PF00847.20 AP2 Domain 1 54 54 48.2 9.4e-13 1 CL0081
Cotton_A_27504_CDS 63 505 63 519 PF00067.22 p450 Domain 1 450 463 353.1 2.2e-105 1 No_clan
Cotton_A_36235_CDS 12 141 12 141 PF02365.15 NAM Family 1 126 126 140.4 5.4e-41 1 No_clan
Cotton_A_09337_CDS 174 480 172 481 PF00291.25 PALP Family 3 293 294 172.0 1.9e-50 1 CL0063
Cotton_A_27579_CDS 148 214 144 230 PF00069.25 Pkinase Domain 86 153 264 63.6 1.8e-17 1 CL0016
Cotton_A_30409_CDS 38 122 37 122 PF01388.21 ARID Domain 2 90 90 68.1 8.2e-19 1 CL0123
Cotton_A_30409_CDS 265 332 265 332 PF00505.19 HMG_box Domain 1 69 69 60.6 1.4e-16 1 CL0114
Cotton_A_36712_CDS 43 115 42 116 PF04181.13 RPAP2_Rtr1 Family 2 74 75 75.6 2.8e-21 1 No_clan
Cotton_A_04342_CDS 111 262 111 262 PF14538.6 Raptor_N Domain 1 147 147 222.2 2.5e-66 1 CL0093
Cotton_A_26086_CDS 68 115 68 115 PF03107.16 C1_2 Domain 1 47 47 32.2 9.7e-08 1 CL0006
Cotton_A_26086_CDS 190 240 189 240 PF03107.16 C1_2 Domain 2 47 47 26.8 4.6e-06 1 CL0006
Cotton_A_26086_CDS 251 293 251 294 PF03107.16 C1_2 Domain 1 46 47 32.7 6.8e-08 1 CL0006
Cotton_A_26086_CDS 394 438 393 438 PF03107.16 C1_2 Domain 2 47 47 35.2 1.1e-08 1 CL0006
Cotton_A_36008_CDS 110 197 109 220 PF01764.25 Lipase_3 Family 2 94 142 30.2 3.5e-07 1 CL0028
Cotton_A_16232_CDS 17 431 11 433 PF02458.15 Transferase Family 7 431 434 313.0 2.8e-93 1 CL0149
Cotton_A_37811_CDS 159 207 159 208 PF15985.5 KH_6 Domain 1 45 46 59.6 2.7e-16 1 CL0007
Cotton_A_30959_CDS 52 172 52 173 PF01650.18 Peptidase_C13 Family 1 118 256 168.4 2.1e-49 1 CL0093
Cotton_A_30959_CDS 192 249 189 256 PF01650.18 Peptidase_C13 Family 192 249 256 61.5 8.5e-17 1 CL0093
Cotton_A_23217_CDS 29 112 29 113 PF01095.19 Pectinesterase Family 1 84 298 72.6 2.1e-20 1 CL0268
Cotton_A_25807_CDS 15 102 14 105 PF00011.21 HSP20 Family 2 97 102 40.4 2.5e-10 1 CL0190
Cotton_A_27109_CDS 24 512 22 514 PF00083.24 Sugar_tr Family 3 449 452 161.9 2.3e-47 1 CL0015
Cotton_A_25402_CDS 32 181 32 182 PF04031.13 Las1 Family 1 152 153 134.8 2.5e-39 1 No_clan
Cotton_A_23949_CDS 113 159 113 159 PF01476.20 LysM Domain 1 44 44 28.2 1.4e-06 1 CL0187
Cotton_A_23949_CDS 179 221 179 221 PF01476.20 LysM Domain 1 44 44 34.7 1.3e-08 1 CL0187
Cotton_A_37195_CDS 44 451 42 452 PF00501.28 AMP-binding Family 4 422 423 346.4 1.8e-103 1 CL0378
Cotton_A_37195_CDS 460 535 460 535 PF13193.6 AMP-binding_C Domain 1 76 76 59.2 5.8e-16 1 CL0531
Cotton_A_04787_CDS 12 101 11 123 PF02338.19 OTU Family 2 95 127 31.5 2.1e-07 1 CL0125
Cotton_A_28516_CDS 1 95 1 104 PF05695.12 DUF825 Family 565 661 1486 170.6 3e-50 1 No_clan
Cotton_A_40901_CDS 28 83 26 84 PF02701.15 zf-Dof Family 3 58 59 112.3 8.8e-33 1 No_clan
Cotton_A_22565_CDS 33 177 4 180 PF00931.22 NB-ARC Domain 100 242 252 101.7 3.7e-29 1 CL0023
Cotton_A_06074_CDS 18 48 16 88 PF00128.24 Alpha-amylase Domain 52 82 337 34.5 1.6e-08 1 CL0058
Cotton_A_00399_CDS 503 573 503 575 PF04564.15 U-box Domain 2 71 73 58.2 6.6e-16 1 CL0229
Cotton_A_00399_CDS 1227 1256 1219 1256 PF00400.32 WD40 Repeat 9 37 38 21.4 0.00033 1 CL0186
Cotton_A_33750_CDS 147 213 147 214 PF00542.19 Ribosomal_L12 Domain 1 66 67 76.2 1.9e-21 1 No_clan
Cotton_A_05088_CDS 247 288 245 293 PF13920.6 zf-C3HC4_3 Domain 3 45 50 38.0 1.1e-09 1 CL0229
Cotton_A_20935_CDS 217 470 217 470 PF04646.12 DUF604 Family 1 256 256 386.4 5.4e-116 1 CL0110
Cotton_A_07357_CDS 94 259 94 259 PF14299.6 PP2 Family 1 146 146 122.2 1.6e-35 1 No_clan
Cotton_A_09669_CDS 121 249 112 268 PF00326.21 Peptidase_S9 Domain 34 171 212 26.8 3e-06 1 CL0028
Cotton_A_09669_CDS 448 568 440 568 PF08614.11 ATG16 Coiled-coil 80 200 200 57.4 2.2e-15 1 No_clan
Cotton_A_09669_CDS 617 653 615 653 PF00400.32 WD40 Repeat 3 38 38 14.2 0.061 1 CL0186
Cotton_A_09669_CDS 701 738 699 738 PF00400.32 WD40 Repeat 3 38 38 23.0 0.0001 1 CL0186
Cotton_A_09669_CDS 744 779 742 779 PF00400.32 WD40 Repeat 3 38 38 23.1 9.6e-05 1 CL0186
Cotton_A_09669_CDS 846 867 816 867 PF00400.32 WD40 Repeat 15 38 38 18.1 0.0036 1 CL0186
Cotton_A_13697_CDS 34 96 33 96 PF03732.17 Retrotrans_gag Family 2 66 96 40.5 2.6e-10 1 CL0523
Cotton_A_20508_CDS 60 179 60 180 PF00917.26 MATH Domain 1 112 113 72.7 2.5e-20 1 CL0389
Cotton_A_20508_CDS 198 519 198 519 PF00443.29 UCH Family 1 257 257 159.9 8.2e-47 1 CL0125
Cotton_A_20508_CDS 623 875 623 875 PF12436.8 USP7_ICP0_bdg Family 1 240 240 256.4 2.2e-76 1 CL0072
Cotton_A_20508_CDS 885 1095 884 1096 PF14533.6 USP7_C2 Family 2 205 206 193.3 4e-57 1 CL0072
Cotton_A_14562_CDS 53 156 53 156 PF00011.21 HSP20 Family 1 102 102 110.8 3.1e-32 1 CL0190
Cotton_A_04971_CDS 2 68 1 68 PF12609.8 DUF3774 Family 12 73 74 53.6 3.4e-14 1 No_clan
Cotton_A_29103_CDS 52 417 51 417 PF00155.21 Aminotran_1_2 Domain 2 363 363 313.7 1.8e-93 1 CL0061
Cotton_A_10461_CDS 32 81 32 81 PF08100.11 Dimerisation Domain 1 51 51 60.4 1.2e-16 1 CL0123
Cotton_A_10461_CDS 133 248 133 252 PF00891.18 Methyltransf_2 Domain 1 121 210 83.7 1.1e-23 1 CL0063
Cotton_A_11241_CDS 55 571 54 572 PF01019.21 G_glu_transpept Domain 2 511 512 584.7 1.7e-175 1 CL0052
Cotton_A_11241_CDS 633 1148 632 1149 PF01019.21 G_glu_transpept Domain 2 511 512 591.6 1.4e-177 1 CL0052
Cotton_A_21612_CDS 105 372 103 394 PF00251.20 Glyco_hydro_32N Domain 14 267 305 282.4 5.4e-84 1 CL0143
Cotton_A_21612_CDS 388 563 388 563 PF08244.12 Glyco_hydro_32C Domain 1 158 158 92.1 3.5e-26 1 CL0004
Cotton_A_02228_CDS 236 595 236 598 PF03081.15 Exo70 Family 1 373 376 370.8 7.5e-111 1 CL0295
Cotton_A_08072_CDS 179 194 177 198 PF14383.6 VARLMGL Domain 12 27 32 23.5 2.9e-05 1 No_clan
Cotton_A_30048_CDS 143 189 138 190 PF12678.7 zf-rbx1 Domain 8 54 55 42.8 4.7e-11 1 CL0229
Cotton_A_30048_CDS 220 352 215 353 PF00179.26 UQ_con Domain 6 139 140 131.3 1.9e-38 1 CL0208
Cotton_A_07663_CDS 102 224 102 227 PF01214.18 CK_II_beta Domain 1 121 182 167.1 3.4e-49 1 No_clan
Cotton_A_10193_CDS 6 321 5 321 PF07992.14 Pyr_redox_2 Domain 2 294 294 193.9 3.5e-57 1 CL0063
Cotton_A_08163_CDS 124 173 123 174 PF00847.20 AP2 Domain 2 53 54 46.7 2.7e-12 1 CL0081
Cotton_A_18549_CDS 259 329 259 331 PF04564.15 U-box Domain 1 71 73 76.7 1.2e-21 1 CL0229
Cotton_A_18549_CDS 386 425 386 426 PF00514.23 Arm Repeat 1 40 41 38.0 1.1e-09 1 CL0020
Cotton_A_18549_CDS 469 507 469 508 PF00514.23 Arm Repeat 2 40 41 32.4 6.5e-08 1 CL0020
Cotton_A_14673_CDS 216 356 215 357 PF00004.29 AAA Domain 2 131 132 66.0 4.5e-18 1 CL0023
Cotton_A_17712_CDS 304 466 303 478 PF00664.23 ABC_membrane Family 2 167 274 57.3 1.9e-15 1 CL0241
Cotton_A_17712_CDS 510 645 510 646 PF00005.27 ABC_tran Domain 1 136 137 64.2 1.7e-17 1 CL0023
Cotton_A_17712_CDS 797 952 796 955 PF00664.23 ABC_membrane Family 2 161 274 68.7 6.2e-19 1 CL0241
Cotton_A_21394_CDS 95 384 95 384 PF03151.16 TPT Family 1 290 290 384.1 4.1e-115 1 CL0184
Cotton_A_16249_CDS 278 634 278 635 PF03081.15 Exo70 Family 1 375 376 435.5 1.7e-130 1 CL0295
Cotton_A_02409_CDS 68 223 67 223 PF02453.17 Reticulon Family 2 157 157 172.8 4.8e-51 1 CL0484
Cotton_A_37357_CDS 27 344 27 345 PF00332.18 Glyco_hydro_17 Domain 1 312 313 223.2 5.9e-66 1 CL0058
Cotton_A_37357_CDS 366 436 366 436 PF07983.13 X8 Domain 1 76 76 65.2 6.7e-18 1 No_clan
Cotton_A_07666_CDS 216 284 216 286 PF00076.22 RRM_1 Domain 1 68 70 67.1 9e-19 1 CL0221
Cotton_A_07666_CDS 296 362 296 364 PF00076.22 RRM_1 Domain 1 63 70 34.9 9.6e-09 1 CL0221
Cotton_A_07666_CDS 393 459 393 463 PF00076.22 RRM_1 Domain 1 66 70 45.1 6.4e-12 1 CL0221
Cotton_A_11618_CDS 22 85 22 86 PF05641.12 Agenet Domain 1 60 61 36.2 6.1e-09 1 CL0049
Cotton_A_11618_CDS 186 245 186 245 PF05641.12 Agenet Domain 1 61 61 47.5 1.8e-12 1 CL0049
Cotton_A_11618_CDS 257 315 256 316 PF05641.12 Agenet Domain 2 60 61 20.8 0.0004 1 CL0049
Cotton_A_34559_CDS 344 402 342 402 PF13855.6 LRR_8 Repeat 3 61 61 32.9 3.9e-08 1 CL0022
Cotton_A_34559_CDS 414 471 413 473 PF13855.6 LRR_8 Repeat 2 59 61 32.4 5.6e-08 1 CL0022
Cotton_A_34559_CDS 607 666 606 666 PF13855.6 LRR_8 Repeat 2 61 61 30.8 1.9e-07 1 CL0022
Cotton_A_01881_CDS 17 113 16 164 PF00651.31 BTB Domain 2 80 111 51.7 8.4e-14 1 CL0033
Cotton_A_01881_CDS 199 258 199 258 PF11900.8 DUF3420 Repeat 1 47 47 56.2 2.8e-15 1 CL0465
Cotton_A_01881_CDS 264 346 257 347 PF12796.7 Ank_2 Repeat 8 82 83 46.3 4.6e-12 1 CL0465
Cotton_A_12604_CDS 2 46 1 46 PF06886.11 TPX2 Family 13 57 57 43.2 3.5e-11 1 No_clan
Cotton_A_09331_CDS 21 94 21 97 PF07650.17 KH_2 Domain 1 75 78 47.2 1.5e-12 1 CL0007
Cotton_A_09331_CDS 107 189 106 189 PF00189.20 Ribosomal_S3_C Domain 2 83 83 88.4 3.4e-25 1 No_clan
Cotton_A_32718_CDS 3 49 3 56 PF10172.9 DDA1 Family 1 47 66 44.4 1.4e-11 1 No_clan
Cotton_A_20080_CDS 14 104 12 117 PF00168.30 C2 Domain 3 91 103 38.8 8.8e-10 1 CL0154
Cotton_A_38151_CDS 25 75 24 76 PF13833.6 EF-hand_8 Domain 2 54 55 38.1 9.7e-10 1 CL0220
Cotton_A_38151_CDS 83 146 83 147 PF13499.6 EF-hand_7 Domain 1 70 71 63.9 1.4e-17 1 CL0220
Cotton_A_22600_CDS 54 94 52 99 PF00643.24 zf-B_box Domain 3 37 42 26.0 7.5e-06 1 No_clan
Cotton_A_27521_CDS 28 172 27 173 PF03018.14 Dirigent Family 2 147 148 175.5 5.5e-52 1 CL0650
Cotton_A_35638_CDS 40 385 38 385 PF04724.13 Glyco_transf_17 Family 3 349 349 594.2 7.2e-179 1 No_clan
Cotton_A_29022_CDS 3 211 3 212 PF00091.25 Tubulin Domain 1 196 197 235.2 7.2e-70 1 CL0566
Cotton_A_29022_CDS 261 382 261 383 PF03953.17 Tubulin_C Domain 1 125 126 139.6 5.7e-41 1 CL0442
Cotton_A_33135_CDS 61 124 58 124 PF13499.6 EF-hand_7 Domain 2 71 71 38.0 1.6e-09 1 CL0220
Cotton_A_33135_CDS 152 201 151 201 PF13833.6 EF-hand_8 Domain 2 53 55 40.9 1.4e-10 1 CL0220
Cotton_A_07116_CDS 55 166 35 178 PF00156.27 Pribosyltran Domain 25 131 159 70.6 1e-19 1 CL0533
Cotton_A_31268_CDS 66 339 64 340 PF00701.22 DHDPS Domain 3 288 289 306.8 9.1e-92 1 CL0036
Cotton_A_33694_CDS 284 399 283 399 PF01399.27 PCI Domain 2 105 105 44.4 1.9e-11 1 CL0123
Cotton_A_17045_CDS 39 361 38 361 PF03492.15 Methyltransf_7 Family 2 334 334 383.4 9.1e-115 1 CL0063
Cotton_A_05083_CDS 4 23 3 25 PF00560.33 LRR_1 Repeat 2 21 23 10.0 1.2 1 CL0022
Cotton_A_05083_CDS 27 39 27 54 PF00560.33 LRR_1 Repeat 1 13 23 11.2 0.48 1 CL0022
Cotton_A_20356_CDS 219 261 219 262 PF06203.14 CCT Motif 1 43 44 60.9 9e-17 1 CL0281
Cotton_A_06094_CDS 162 241 156 262 PF13676.6 TIR_2 Domain 12 97 118 29.9 6.8e-07 1 CL0173
Cotton_A_17775_CDS 36 68 36 69 PF13181.6 TPR_8 Repeat 1 33 34 14.3 0.035 1 CL0020
Cotton_A_17775_CDS 71 102 70 103 PF13181.6 TPR_8 Repeat 2 33 34 14.2 0.039 1 CL0020
Cotton_A_17775_CDS 163 238 162 238 PF04969.16 CS Domain 2 76 76 54.1 2.4e-14 1 CL0190
Cotton_A_17775_CDS 281 360 280 360 PF05002.15 SGS Domain 2 83 83 120.9 1.8e-35 1 No_clan
Cotton_A_11012_CDS 132 293 131 294 PF05142.12 DUF702 Family 2 149 150 203.5 2.1e-60 1 No_clan
Cotton_A_31764_CDS 89 156 89 157 PF13450.6 NAD_binding_8 Domain 1 67 68 51.1 1.2e-13 1 CL0063
Cotton_A_04823_CDS 39 501 39 501 PF00759.19 Glyco_hydro_9 Domain 1 411 411 480.9 4.4e-144 1 CL0059
Cotton_A_00336_CDS 83 106 82 107 PF01535.20 PPR Family 5 28 31 18.0 0.0024 1 CL0020
Cotton_A_00336_CDS 112 161 112 161 PF13041.6 PPR_2 Repeat 1 50 50 40.2 2.9e-10 1 CL0020
Cotton_A_00336_CDS 182 231 182 231 PF13041.6 PPR_2 Repeat 1 50 50 43.4 2.9e-11 1 CL0020
Cotton_A_00336_CDS 253 301 253 302 PF13041.6 PPR_2 Repeat 1 49 50 62.3 3.7e-17 1 CL0020
Cotton_A_00336_CDS 324 369 323 369 PF13041.6 PPR_2 Repeat 2 48 50 52.6 3.8e-14 1 CL0020
Cotton_A_00336_CDS 388 419 388 419 PF12854.7 PPR_1 Repeat 1 32 34 33.7 2.1e-08 1 CL0020
Cotton_A_00336_CDS 432 459 430 460 PF01535.20 PPR Family 3 30 31 24.4 2.1e-05 1 CL0020
Cotton_A_00336_CDS 466 495 465 495 PF01535.20 PPR Family 2 31 31 12.8 0.11 1 CL0020
Cotton_A_00336_CDS 497 545 497 546 PF13041.6 PPR_2 Repeat 1 49 50 60.5 1.3e-16 1 CL0020
Cotton_A_00336_CDS 565 596 563 596 PF12854.7 PPR_1 Repeat 3 34 34 36.2 3.6e-09 1 CL0020
Cotton_A_00336_CDS 603 651 602 651 PF13041.6 PPR_2 Repeat 2 50 50 48.6 6.6e-13 1 CL0020
Cotton_A_07281_CDS 22 164 16 165 PF07744.13 SPOC Domain 9 150 151 58.0 9.9e-16 1 CL0616
Cotton_A_03322_CDS 62 540 61 541 PF03055.15 RPE65 Family 2 462 463 423.6 1.2e-126 1 No_clan
Cotton_A_31149_CDS 277 466 276 466 PF00270.29 DEAD Domain 2 176 176 143.1 7.2e-42 1 CL0023
Cotton_A_31149_CDS 501 608 500 609 PF00271.31 Helicase_C Family 2 110 111 91.8 3.3e-26 1 CL0023
Cotton_A_33993_CDS 40 165 40 165 PF14845.6 Glycohydro_20b2 Domain 1 137 137 63.8 2.5e-17 1 CL0546
Cotton_A_33993_CDS 190 494 190 495 PF00728.22 Glyco_hydro_20 Domain 1 353 354 279.4 5e-83 1 CL0058
Cotton_A_12947_CDS 78 95 73 97 PF14383.6 VARLMGL Domain 13 30 32 32.9 3.3e-08 1 No_clan
Cotton_A_14756_CDS 5 63 1 77 PF02519.14 Auxin_inducible Family 21 75 90 41.8 9.2e-11 1 No_clan
Cotton_A_12814_CDS 65 214 64 214 PF00190.22 Cupin_1 Domain 2 151 151 175.5 5.1e-52 1 CL0029
Cotton_A_29325_CDS 58 418 58 420 PF13968.6 DUF4220 Family 1 346 347 289.2 5.2e-86 1 No_clan
Cotton_A_29325_CDS 644 694 641 694 PF04578.13 DUF594 Family 5 55 55 70.7 5.4e-20 1 No_clan
Cotton_A_26334_CDS 38 488 38 496 PF00067.22 p450 Domain 1 454 463 334.4 1e-99 1 No_clan
Cotton_A_11585_CDS 34 209 34 209 PF00479.22 G6PD_N Domain 1 177 177 181.6 2.1e-53 1 CL0063
Cotton_A_11585_CDS 211 490 211 498 PF02781.16 G6PD_C Domain 1 287 290 386.5 6.6e-116 1 CL0139
Cotton_A_04667_CDS 321 378 320 378 PF03106.15 WRKY Domain 2 59 59 84.9 3.1e-24 1 CL0274
Cotton_A_19417_CDS 34 49 34 49 PF07145.15 PAM2 Motif 3 18 18 20.0 0.00036 1 No_clan
Cotton_A_15727_CDS 80 194 80 194 PF06549.12 DUF1118 Family 1 115 115 162.3 4.5e-48 1 No_clan
Cotton_A_26716_CDS 241 448 240 451 PF00924.18 MS_channel Family 2 203 206 97.2 9.5e-28 1 No_clan
Cotton_A_02959_CDS 32 111 32 112 PF13774.6 Longin Domain 1 83 84 82.3 1.9e-23 1 No_clan
Cotton_A_02959_CDS 129 174 127 176 PF00957.21 Synaptobrevin Family 3 48 89 57.1 1.1e-15 1 CL0445
Cotton_A_30386_CDS 35 306 34 308 PF00664.23 ABC_membrane Family 2 272 274 167.5 4.6e-49 1 CL0241
Cotton_A_30386_CDS 436 557 432 557 PF00005.27 ABC_tran Domain 29 137 137 73.1 3e-20 1 CL0023
Cotton_A_14933_CDS 60 303 60 329 PF00561.20 Abhydrolase_1 Domain 1 234 257 73.5 2.1e-20 1 CL0028
Cotton_A_05556_CDS 260 632 260 632 PF03514.14 GRAS Family 1 374 374 387.7 5e-116 1 CL0063
Cotton_A_04178_CDS 42 154 40 156 PF07732.15 Cu-oxidase_3 Domain 3 117 119 146.7 2.7e-43 1 CL0026
Cotton_A_04178_CDS 167 316 166 317 PF00394.22 Cu-oxidase Domain 2 158 159 148.6 1.6e-43 1 CL0026
Cotton_A_04178_CDS 426 558 425 560 PF07731.14 Cu-oxidase_2 Domain 2 135 137 138.0 1.6e-40 1 CL0026
Cotton_A_21854_CDS 18 40 14 40 PF13961.6 DUF4219 Domain 5 27 27 32.1 6.5e-08 1 CL0523
Cotton_A_21854_CDS 54 138 24 140 PF14223.6 Retrotran_gag_2 Family 47 129 138 53.7 1.6e-14 1 CL0523
Cotton_A_00514_CDS 112 138 110 139 PF01535.20 PPR Family 4 30 31 12.9 0.1 1 CL0020
Cotton_A_00514_CDS 165 221 164 226 PF13812.6 PPR_3 Repeat 2 58 63 37.8 1.5e-09 1 CL0020
Cotton_A_00514_CDS 246 295 246 295 PF13041.6 PPR_2 Repeat 1 50 50 65.8 2.8e-18 1 CL0020
Cotton_A_00514_CDS 319 349 319 349 PF01535.20 PPR Family 1 31 31 25.8 8e-06 1 CL0020
Cotton_A_00514_CDS 386 431 386 433 PF13041.6 PPR_2 Repeat 1 46 50 43.7 2.2e-11 1 CL0020
Cotton_A_00514_CDS 456 505 456 505 PF13041.6 PPR_2 Repeat 1 50 50 51.2 1.1e-13 1 CL0020
Cotton_A_00514_CDS 526 575 526 575 PF13041.6 PPR_2 Repeat 1 50 50 55.8 3.8e-15 1 CL0020
Cotton_A_00514_CDS 596 645 596 645 PF13041.6 PPR_2 Repeat 1 50 50 51.6 8e-14 1 CL0020
Cotton_A_00514_CDS 665 710 665 712 PF13041.6 PPR_2 Repeat 1 46 50 43.9 1.9e-11 1 CL0020
Cotton_A_00514_CDS 739 753 738 755 PF01535.20 PPR Family 2 16 31 9.4 1.3 1 CL0020
Cotton_A_03123_CDS 100 402 98 404 PF00365.20 PFK Domain 3 282 284 211.6 1.4e-62 1 CL0240
Cotton_A_07326_CDS 143 358 142 358 PF04755.12 PAP_fibrillin Family 2 198 198 244.5 8.9e-73 1 No_clan
Cotton_A_15531_CDS 172 222 171 223 PF05739.19 SNARE Family 2 52 53 43.3 2.7e-11 1 No_clan
Cotton_A_04602_CDS 185 264 182 265 PF00439.25 Bromodomain Domain 4 83 84 80.3 8e-23 1 No_clan
Cotton_A_11869_CDS 9 66 5 69 PF01363.21 FYVE Domain 7 65 68 55.5 4.8e-15 1 CL0390
Cotton_A_11869_CDS 203 270 193 277 PF12796.7 Ank_2 Repeat 3 60 83 30.3 4.8e-07 1 CL0465
Cotton_A_34163_CDS 254 471 253 472 PF06775.14 Seipin Family 2 196 197 135.8 1.9e-39 1 No_clan
Cotton_A_10945_CDS 2 109 2 112 PF08610.10 Pex16 Family 1 118 324 70.5 1.3e-19 1 No_clan
Cotton_A_40401_CDS 27 87 9 90 PF00112.23 Peptidase_C1 Domain 139 202 218 61.4 1.3e-16 1 CL0125
Cotton_A_34502_CDS 112 224 112 225 PF03479.15 DUF296 Domain 1 106 107 103.6 7e-30 1 CL0615
Cotton_A_22805_CDS 15 510 15 510 PF08217.11 DUF1712 Family 1 609 609 286.1 5.6e-85 1 No_clan
Cotton_A_00134_CDS 43 282 43 284 PF00141.23 peroxidase Domain 1 227 229 251.1 1e-74 1 CL0617
Cotton_A_21691_CDS 51 133 19 133 PF00583.25 Acetyltransf_1 Family 37 117 117 44.9 1.1e-11 1 CL0257
Cotton_A_04798_CDS 23 198 22 198 PF04520.13 Senescence_reg Family 2 168 168 130.4 1.1e-37 1 No_clan
Cotton_A_02006_CDS 39 499 39 504 PF00067.22 p450 Domain 1 457 463 355.0 5.7e-106 1 No_clan
Cotton_A_00581_CDS 52 105 51 106 PF00646.33 F-box Domain 2 47 48 39.4 3.7e-10 1 CL0271
Cotton_A_00581_CDS 116 420 116 420 PF01167.18 Tub Domain 1 241 241 328.9 2.1e-98 1 CL0395
Cotton_A_14834_CDS 16 193 15 195 PF01582.20 TIR Family 2 174 176 149.8 6.5e-44 1 CL0173
Cotton_A_14834_CDS 209 303 196 316 PF00931.22 NB-ARC Domain 16 112 252 34.3 1.3e-08 1 CL0023
Cotton_A_13360_CDS 151 210 151 212 PF00130.22 C1_1 Domain 1 51 53 44.0 1.5e-11 1 CL0006
Cotton_A_13360_CDS 361 461 361 484 PF00781.24 DAGK_cat Family 1 104 126 92.0 2.1e-26 1 CL0240
Cotton_A_13360_CDS 508 664 507 664 PF00609.19 DAGK_acc Family 2 160 160 186.9 3e-55 1 No_clan
Cotton_A_33497_CDS 2 182 1 185 PF02458.15 Transferase Family 2 177 434 150.6 5.3e-44 1 CL0149
Cotton_A_35689_CDS 14 118 14 118 PF02991.16 Atg8 Domain 1 104 104 169.9 1.3e-50 1 CL0072
Cotton_A_37885_CDS 93 145 93 145 PF02861.20 Clp_N Family 1 53 53 34.9 1.3e-08 1 No_clan
Cotton_A_37885_CDS 181 217 176 222 PF02861.20 Clp_N Family 11 48 53 21.4 0.0002 1 No_clan
Cotton_A_19094_CDS 85 154 85 154 PF01287.20 eIF-5a Domain 1 69 69 101.9 1.5e-29 1 CL0021
Cotton_A_11725_CDS 9 270 6 271 PF07651.16 ANTH Domain 4 276 277 138.0 3e-40 1 CL0009
Cotton_A_19623_CDS 32 89 32 90 PF02701.15 zf-Dof Family 1 58 59 115.8 6.7e-34 1 No_clan
Cotton_A_12966_CDS 162 339 162 339 PF11891.8 RETICULATA-like Family 1 177 177 220.3 1.6e-65 1 No_clan
Cotton_A_24162_CDS 7 31 7 31 PF06943.12 zf-LSD1 Domain 1 25 25 35.1 8.2e-09 1 No_clan
Cotton_A_24162_CDS 91 360 91 366 PF00656.22 Peptidase_C14 Domain 1 241 248 179.9 7.9e-53 1 CL0093
Cotton_A_06409_CDS 57 146 56 147 PF00564.24 PB1 Domain 2 83 84 63.4 1.4e-17 1 CL0072
Cotton_A_19396_CDS 401 569 400 571 PF00270.29 DEAD Domain 2 174 176 66.0 3.5e-18 1 CL0023
Cotton_A_19396_CDS 606 712 603 713 PF00271.31 Helicase_C Family 4 110 111 65.2 6e-18 1 CL0023
Cotton_A_19396_CDS 724 804 724 804 PF16124.5 RecQ_Zn_bind Domain 1 66 66 57.3 2e-15 1 No_clan
Cotton_A_19396_CDS 812 924 808 928 PF09382.10 RQC Domain 5 109 114 78.7 2.7e-22 1 CL0123
Cotton_A_19396_CDS 971 1038 969 1038 PF00570.23 HRDC Domain 3 68 68 53.4 1.8e-14 1 CL0426
Cotton_A_08597_CDS 545 613 545 661 PF10366.9 Vps39_1 Family 1 68 108 27.2 3.6e-06 1 CL0020
Cotton_A_08597_CDS 679 846 676 851 PF00637.20 Clathrin Family 5 137 143 43.3 3.1e-11 1 CL0020
Cotton_A_08597_CDS 859 966 859 967 PF10367.9 Vps39_2 Domain 1 108 109 98.1 3.9e-28 1 No_clan
Cotton_A_10512_CDS 21 54 10 54 PF14389.6 Lzipper-MIP1 Family 51 84 84 29.2 8.6e-07 1 No_clan
Cotton_A_10361_CDS 12 171 12 173 PF00071.22 Ras Domain 1 160 162 198.5 5.1e-59 1 CL0023
Cotton_A_01756_CDS 6 94 4 95 PF00166.21 Cpn10 Domain 3 92 93 88.2 2.9e-25 1 CL0296
Cotton_A_08289_CDS 679 724 679 725 PF07496.15 zf-CW Domain 1 47 48 52.1 4.9e-14 1 No_clan
Cotton_A_39927_CDS 507 597 506 597 PF04576.15 Zein-binding Family 2 92 92 112.7 7.5e-33 1 No_clan
Cotton_A_14524_CDS 6 92 5 100 PF12796.7 Ank_2 Repeat 2 74 83 41.9 1.1e-10 1 CL0465
Cotton_A_14524_CDS 114 210 114 212 PF12796.7 Ank_2 Repeat 1 81 83 38.9 9.7e-10 1 CL0465
Cotton_A_14524_CDS 282 402 281 407 PF13962.6 PGG Domain 2 112 116 73.9 8.8e-21 1 No_clan
Cotton_A_22611_CDS 5 137 1 141 PF00069.25 Pkinase Domain 134 260 264 57.2 1.6e-15 1 CL0016
Cotton_A_02190_CDS 78 291 78 294 PF07002.16 Copine Family 1 215 218 245.2 4.7e-73 1 CL0128
Cotton_A_02190_CDS 337 376 335 378 PF13920.6 zf-C3HC4_3 Domain 3 48 50 35.2 8e-09 1 CL0229
Cotton_A_32715_CDS 5 376 1 376 PF05633.11 BPS1 Family 5 388 388 493.1 5.4e-148 1 CL0133
Cotton_A_33562_CDS 39 479 37 494 PF00067.22 p450 Domain 4 445 463 218.8 1.2e-64 1 No_clan
Cotton_A_15414_CDS 27 70 26 71 PF00401.20 ATP-synt_DE Domain 2 46 47 34.8 1.5e-08 1 No_clan
Cotton_A_23706_CDS 16 122 15 122 PF01655.18 Ribosomal_L32e Family 2 108 108 166.7 1.7e-49 1 No_clan
Cotton_A_38269_CDS 54 442 54 449 PF05577.12 Peptidase_S28 Domain 1 418 434 251.9 1e-74 1 CL0028
Cotton_A_26203_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 52.6 3.8e-14 1 CL0123
Cotton_A_26203_CDS 67 111 67 112 PF00249.31 Myb_DNA-binding Domain 1 45 46 55.8 3.7e-15 1 CL0123
Cotton_A_05785_CDS 309 388 309 393 PF13393.6 tRNA-synt_His Domain 1 80 310 26.8 2.8e-06 1 CL0040
Cotton_A_22962_CDS 69 232 68 232 PF14543.6 TAXi_N Domain 3 178 178 119.3 2.1e-34 1 CL0129
Cotton_A_14093_CDS 8 129 6 130 PF02365.15 NAM Family 3 125 126 93.4 2e-26 1 No_clan
Cotton_A_16489_CDS 23 313 23 317 PF00248.21 Aldo_ket_red Domain 1 289 294 243.2 3.3e-72 1 No_clan
Cotton_A_17864_CDS 60 236 60 236 PF02223.17 Thymidylate_kin Domain 1 185 185 161.0 2.4e-47 1 CL0023
Cotton_A_23512_CDS 31 65 31 65 PF08880.11 QLQ Domain 1 35 35 58.3 4.4e-16 1 No_clan
Cotton_A_23512_CDS 93 135 93 135 PF08879.10 WRC Domain 1 43 43 75.1 2.4e-21 1 No_clan
Cotton_A_17959_CDS 10 85 10 85 PF12609.8 DUF3774 Family 1 74 74 112.7 1.2e-32 1 No_clan
Cotton_A_26509_CDS 25 69 23 69 PF12937.7 F-box-like Domain 3 48 48 32.2 7.4e-08 1 CL0271
Cotton_A_26509_CDS 149 368 141 371 PF13621.6 Cupin_8 Domain 9 250 254 70.0 2.5e-19 1 CL0029
Cotton_A_28553_CDS 66 481 64 487 PF02897.15 Peptidase_S9_N Domain 3 408 414 469.6 8e-141 1 CL0186
Cotton_A_28553_CDS 546 777 546 778 PF00326.21 Peptidase_S9 Domain 1 211 212 220.2 2e-65 1 CL0028
Cotton_A_26166_CDS 48 165 47 166 PF00238.19 Ribosomal_L14 Domain 2 121 122 163.0 2.8e-48 1 No_clan
Cotton_A_13954_CDS 82 250 82 251 PF00270.29 DEAD Domain 1 175 176 147.4 3.5e-43 1 CL0023
Cotton_A_13954_CDS 288 397 285 397 PF00271.31 Helicase_C Family 4 111 111 92.7 1.7e-26 1 CL0023
Cotton_A_22259_CDS 20 78 18 78 PF00046.29 Homeodomain Domain 3 57 57 60.9 7.9e-17 1 CL0123
Cotton_A_22259_CDS 164 372 163 373 PF01852.19 START Domain 2 208 209 182.6 6.3e-54 1 CL0209
Cotton_A_22259_CDS 696 836 695 836 PF08670.11 MEKHLA Domain 2 143 143 170.8 1.5e-50 1 CL0183
Cotton_A_11034_CDS 95 164 95 165 PF00076.22 RRM_1 Domain 1 69 70 56.8 1.4e-15 1 CL0221
Cotton_A_00541_CDS 90 117 90 119 PF08041.11 PetM Family 1 28 30 43.0 2.3e-11 1 No_clan
Cotton_A_08171_CDS 132 325 131 327 PF01762.21 Galactosyl_T Family 2 193 195 122.7 1.6e-35 1 CL0110
Cotton_A_16253_CDS 213 438 213 438 PF02854.19 MIF4G Family 1 212 212 192.2 8.3e-57 1 CL0020
Cotton_A_16253_CDS 621 733 621 733 PF02847.17 MA3 Family 1 113 113 83.7 8.9e-24 1 CL0020
Cotton_A_18079_CDS 20 186 17 189 PF03357.21 Snf7 Family 4 170 173 156.7 4.1e-46 1 CL0235
Cotton_A_03938_CDS 8 177 8 179 PF00071.22 Ras Domain 1 160 162 177.3 1.6e-52 1 CL0023
Cotton_A_01454_CDS 2 215 1 215 PF00069.25 Pkinase Domain 50 264 264 183.6 4.5e-54 1 CL0016
Cotton_A_17660_CDS 375 437 374 437 PF08590.10 DUF1771 Domain 2 64 64 52.0 6.7e-14 1 No_clan
Cotton_A_33949_CDS 123 175 122 176 PF13833.6 EF-hand_8 Domain 2 54 55 50.7 1.2e-13 1 CL0220
Cotton_A_13432_CDS 26 330 26 331 PF01156.19 IU_nuc_hydro Domain 1 304 305 270.2 2.7e-80 1 No_clan
Cotton_A_20542_CDS 154 194 150 200 PF00170.21 bZIP_1 Family 5 45 64 29.1 8e-07 1 CL0018
Cotton_A_20542_CDS 237 311 236 312 PF14144.6 DOG1 Family 2 76 77 105.3 1.4e-30 1 No_clan
Cotton_A_00820_CDS 95 475 95 477 PF00916.20 Sulfate_transp Family 1 378 380 434.7 2.3e-130 1 CL0062
Cotton_A_00820_CDS 528 646 528 646 PF01740.21 STAS Domain 1 117 117 110.5 3.5e-32 1 CL0502
Cotton_A_17906_CDS 49 125 42 127 PF02298.17 Cu_bind_like Domain 5 82 84 85.2 2.4e-24 1 CL0026
Cotton_A_02856_CDS 64 176 63 176 PF01981.16 PTH2 Family 2 117 117 142.1 9.1e-42 1 CL0305
Cotton_A_09367_CDS 3 294 2 294 PF01663.22 Phosphodiest Family 37 357 357 295.4 8.1e-88 1 CL0088
Cotton_A_39551_CDS 6 63 6 64 PF00313.22 CSD Domain 1 58 66 84.1 4.4e-24 1 CL0021
Cotton_A_13531_CDS 50 109 49 133 PF03227.16 GILT Family 2 58 106 36.7 3.9e-09 1 CL0172
Cotton_A_13531_CDS 143 181 142 207 PF00445.18 Ribonuclease_T2 Domain 2 45 182 23.9 4e-05 1 No_clan
Cotton_A_20637_CDS 254 408 253 426 PF00069.25 Pkinase Domain 2 153 264 128.0 4e-37 1 CL0016
Cotton_A_20637_CDS 487 590 474 590 PF00069.25 Pkinase Domain 154 264 264 77.5 1e-21 1 CL0016
Cotton_A_19690_CDS 7 167 5 168 PF03467.15 Smg4_UPF3 Family 3 173 174 156.1 8.9e-46 1 CL0221
Cotton_A_03887_CDS 20 53 18 54 PF08557.10 Lipid_DES Domain 3 36 37 72.5 1.4e-20 1 No_clan
Cotton_A_03887_CDS 77 295 76 303 PF00487.24 FA_desaturase Domain 2 245 254 78.2 8.7e-22 1 No_clan
Cotton_A_14255_CDS 37 440 37 460 PF00067.22 p450 Domain 1 438 463 261.3 1.5e-77 1 No_clan
Cotton_A_12253_CDS 23 82 23 82 PF02704.14 GASA Family 1 60 60 83.1 1.1e-23 1 No_clan
Cotton_A_23937_CDS 13 133 4 135 PF05255.11 UPF0220 Family 27 160 166 82.9 1.8e-23 1 No_clan
Cotton_A_28225_CDS 155 251 148 252 PF13426.7 PAS_9 Domain 7 103 104 63.9 1.3e-17 1 CL0183
Cotton_A_28225_CDS 436 528 427 531 PF13426.7 PAS_9 Domain 9 101 104 74.5 6.7e-21 1 CL0183
Cotton_A_28225_CDS 616 900 614 900 PF00069.25 Pkinase Domain 3 264 264 209.7 4.8e-62 1 CL0016
Cotton_A_32346_CDS 104 617 104 617 PF03141.16 Methyltransf_29 Family 1 506 506 752.5 1.9e-226 1 CL0063
Cotton_A_06952_CDS 107 410 107 410 PF00069.25 Pkinase Domain 1 264 264 214.9 1.2e-63 1 CL0016
Cotton_A_06952_CDS 429 473 429 473 PF00433.24 Pkinase_C Family 1 46 46 26.9 6e-06 1 No_clan
Cotton_A_26777_CDS 109 162 102 163 PF01486.17 K-box Family 10 63 93 57.4 1.2e-15 1 No_clan
Cotton_A_01918_CDS 43 269 43 272 PF01255.19 Prenyltransf Family 1 220 224 216.1 4.2e-64 1 No_clan
Cotton_A_20765_CDS 371 577 368 579 PF01501.20 Glyco_transf_8 Family 4 253 256 43.2 3.4e-11 1 CL0110
Cotton_A_35962_CDS 90 321 90 323 PF06159.13 DUF974 Family 1 244 246 220.9 2.2e-65 1 No_clan
Cotton_A_05910_CDS 157 191 153 191 PF00400.32 WD40 Repeat 5 38 38 20.4 0.00066 1 CL0186
Cotton_A_05910_CDS 258 293 254 293 PF00400.32 WD40 Repeat 5 38 38 17.4 0.0059 1 CL0186
Cotton_A_05910_CDS 316 340 309 341 PF00400.32 WD40 Repeat 13 37 38 12.9 0.16 1 CL0186
Cotton_A_05910_CDS 356 387 351 387 PF00400.32 WD40 Repeat 8 38 38 23.4 7.9e-05 1 CL0186
Cotton_A_09987_CDS 16 130 16 132 PF04979.14 IPP-2 Family 1 131 133 70.3 2.6e-19 1 No_clan
Cotton_A_02831_CDS 99 390 99 390 PF03095.15 PTPA Family 1 301 301 413.1 7.5e-124 1 No_clan
Cotton_A_03117_CDS 252 290 251 293 PF12799.7 LRR_4 Repeat 2 41 44 34.4 2e-08 1 CL0022
Cotton_A_39832_CDS 61 112 59 112 PF01192.22 RNA_pol_Rpb6 Family 3 49 49 60.9 8.1e-17 1 No_clan
Cotton_A_03029_CDS 39 107 39 114 PF01255.19 Prenyltransf Family 1 71 224 95.6 2.9e-27 1 No_clan
Cotton_A_14902_CDS 114 153 107 154 PF00010.26 HLH Domain 10 52 53 29.6 5.1e-07 1 No_clan
Cotton_A_38184_CDS 12 111 11 111 PF14368.6 LTP_2 Family 2 97 97 54.4 1e-14 1 CL0482
Cotton_A_15743_CDS 265 329 263 331 PF04564.15 U-box Domain 5 71 73 23.6 4.3e-05 1 CL0229
Cotton_A_29872_CDS 179 235 179 236 PF03106.15 WRKY Domain 1 58 59 90.0 8.3e-26 1 CL0274
Cotton_A_27099_CDS 129 223 126 275 PF12298.8 Bot1p Family 16 114 172 32.0 1.3e-07 1 CL0123
Cotton_A_15368_CDS 208 294 205 296 PF03004.14 Transposase_24 Family 51 140 142 33.6 3.6e-08 1 No_clan
Cotton_A_37420_CDS 10 91 9 120 PF14226.6 DIOX_N Family 2 80 118 47.6 2.5e-12 1 CL0029
Cotton_A_37420_CDS 166 260 163 263 PF03171.20 2OG-FeII_Oxy Domain 4 98 101 54.8 1e-14 1 CL0029
Cotton_A_01782_CDS 72 330 72 330 PF00069.25 Pkinase Domain 1 264 264 253.3 2.5e-75 1 CL0016
Cotton_A_01782_CDS 378 438 375 439 PF13499.6 EF-hand_7 Domain 4 70 71 46.5 3.8e-12 1 CL0220
Cotton_A_01782_CDS 447 510 447 510 PF13499.6 EF-hand_7 Domain 1 71 71 53.8 1.9e-14 1 CL0220
Cotton_A_04676_CDS 46 365 46 367 PF00332.18 Glyco_hydro_17 Domain 1 311 313 250.9 2.1e-74 1 CL0058
Cotton_A_04676_CDS 383 454 382 454 PF07983.13 X8 Domain 2 76 76 75.3 4.7e-21 1 No_clan
Cotton_A_01385_CDS 60 513 60 519 PF00067.22 p450 Domain 1 457 463 319.7 3e-95 1 No_clan
Cotton_A_40691_CDS 95 376 92 378 PF01733.18 Nucleoside_tran Family 8 307 309 105.3 4e-30 1 CL0015
Cotton_A_37559_CDS 84 186 84 186 PF03101.15 FAR1 Domain 1 90 90 96.5 1.2e-27 1 CL0274
Cotton_A_37559_CDS 285 375 284 378 PF10551.9 MULE Domain 2 93 96 92.8 1.3e-26 1 CL0219
Cotton_A_37559_CDS 575 597 564 598 PF04434.17 SWIM Domain 15 37 40 18.8 0.00091 1 No_clan
Cotton_A_17840_CDS 91 393 90 394 PF11707.8 Npa1 Family 2 338 339 191.7 2.2e-56 1 No_clan
Cotton_A_17840_CDS 2032 2222 2032 2222 PF16201.5 NopRA1 Family 1 201 201 151.9 1.6e-44 1 No_clan
Cotton_A_12203_CDS 9 191 9 192 PF01965.24 DJ-1_PfpI Domain 1 164 165 162.1 9.4e-48 1 CL0014
Cotton_A_12203_CDS 202 384 202 385 PF01965.24 DJ-1_PfpI Domain 1 164 165 185.0 8.8e-55 1 CL0014
Cotton_A_08559_CDS 32 101 30 102 PF01363.21 FYVE Domain 3 67 68 65.9 2.7e-18 1 CL0390
Cotton_A_08559_CDS 402 648 380 674 PF00118.24 Cpn60_TCP1 Family 138 374 491 112.4 2.1e-32 1 No_clan
Cotton_A_08559_CDS 1546 1712 1538 1715 PF01504.18 PIP5K Family 10 169 274 113.7 9e-33 1 CL0016
Cotton_A_05193_CDS 53 85 53 89 PF00005.27 ABC_tran Domain 1 33 137 27.9 2.9e-06 1 CL0023
Cotton_A_05193_CDS 87 139 81 140 PF00005.27 ABC_tran Domain 80 136 137 38.8 1.2e-09 1 CL0023
Cotton_A_29351_CDS 1 71 1 71 PF01190.17 Pollen_Ole_e_I Family 24 99 99 44.3 1.7e-11 1 CL0287
Cotton_A_33973_CDS 105 143 104 145 PF03790.13 KNOX1 Family 2 40 43 78.2 2.8e-22 1 No_clan
Cotton_A_33973_CDS 156 202 155 202 PF03791.13 KNOX2 Family 2 48 48 73.1 9.2e-21 1 No_clan
Cotton_A_33973_CDS 287 308 287 308 PF03789.13 ELK Domain 1 22 22 42.6 4.2e-11 1 No_clan
Cotton_A_33973_CDS 327 366 327 366 PF05920.11 Homeobox_KN Family 1 40 40 60.9 7.7e-17 1 CL0123
Cotton_A_24717_CDS 42 154 42 155 PF00917.26 MATH Domain 1 112 113 38.3 1.2e-09 1 CL0389
Cotton_A_24717_CDS 173 502 173 502 PF00443.29 UCH Family 1 257 257 143.6 7.2e-42 1 CL0125
Cotton_A_24717_CDS 606 857 606 857 PF12436.8 USP7_ICP0_bdg Family 1 240 240 257.9 7.6e-77 1 CL0072
Cotton_A_24717_CDS 867 1075 866 1076 PF14533.6 USP7_C2 Family 2 205 206 191.3 1.6e-56 1 CL0072
Cotton_A_11336_CDS 47 103 46 104 PF02701.15 zf-Dof Family 2 58 59 114.9 1.3e-33 1 No_clan
Cotton_A_37158_CDS 82 140 80 141 PF00170.21 bZIP_1 Family 5 63 64 46.8 2.4e-12 1 CL0018
Cotton_A_15641_CDS 26 77 25 77 PF16594.5 ATP-synt_Z Family 2 53 53 95.6 8.6e-28 1 No_clan
Cotton_A_04844_CDS 24 137 23 137 PF06278.11 CNDH2_N Family 2 112 112 138.8 8.1e-41 1 No_clan
Cotton_A_04844_CDS 161 311 161 312 PF16869.5 CNDH2_M Family 1 140 140 93.0 2.5e-26 1 No_clan
Cotton_A_04844_CDS 316 607 316 612 PF16858.5 CNDH2_C Family 1 290 295 195.3 2e-57 1 No_clan
Cotton_A_10379_CDS 4 69 1 70 PF13966.6 zf-RVT Domain 18 83 85 59.1 5.3e-16 1 No_clan
Cotton_A_14976_CDS 97 275 97 275 PF06026.14 Rib_5-P_isom_A Family 1 173 173 204.0 1.3e-60 1 CL0246
Cotton_A_23112_CDS 84 436 79 438 PF06870.12 RNA_pol_I_A49 Family 6 384 385 185.0 2e-54 1 CL0662
Cotton_A_16582_CDS 39 188 39 188 PF04043.15 PMEI Domain 1 154 154 92.5 3.2e-26 1 No_clan
Cotton_A_23325_CDS 120 205 118 208 PF00153.27 Mito_carr Family 3 94 97 60.1 1.5e-16 1 No_clan
Cotton_A_23325_CDS 214 300 211 303 PF00153.27 Mito_carr Family 4 94 97 62.8 2.1e-17 1 No_clan
Cotton_A_23325_CDS 327 413 325 416 PF00153.27 Mito_carr Family 3 93 97 65.7 2.7e-18 1 No_clan
Cotton_A_34567_CDS 46 195 35 195 PF12076.8 Wax2_C Domain 16 164 164 199.9 2.1e-59 1 No_clan
Cotton_A_24060_CDS 331 397 328 398 PF04542.14 Sigma70_r2 Domain 4 70 71 55.0 5e-15 1 CL0123
Cotton_A_24060_CDS 408 480 407 484 PF04539.16 Sigma70_r3 Family 2 74 78 54.0 1.3e-14 1 CL0123
Cotton_A_24060_CDS 496 549 496 549 PF04545.16 Sigma70_r4 Domain 1 50 50 59.0 2.3e-16 1 CL0123
Cotton_A_09364_CDS 50 117 50 119 PF12265.8 CAF1C_H4-bd Family 1 65 67 59.8 2.3e-16 1 No_clan
Cotton_A_09364_CDS 198 233 194 233 PF00400.32 WD40 Repeat 5 38 38 16.2 0.014 1 CL0186
Cotton_A_09364_CDS 278 313 275 313 PF00400.32 WD40 Repeat 5 38 38 13.0 0.15 1 CL0186
Cotton_A_09364_CDS 326 358 319 358 PF00400.32 WD40 Repeat 8 38 38 21.7 0.00026 1 CL0186
Cotton_A_09364_CDS 368 407 368 407 PF00400.32 WD40 Repeat 1 38 38 26.0 1.1e-05 1 CL0186
Cotton_A_03310_CDS 150 192 140 195 PF16203.5 ERCC3_RAD25_C Domain 56 98 247 43.1 2.9e-11 1 CL0023
Cotton_A_09532_CDS 4 38 4 41 PF01111.19 CKS Domain 1 35 68 51.1 1.2e-13 1 No_clan
Cotton_A_14335_CDS 69 120 69 121 PF03140.15 DUF247 Family 1 50 397 37.0 2.3e-09 1 No_clan
Cotton_A_28772_CDS 249 290 247 290 PF13639.6 zf-RING_2 Domain 3 44 44 42.5 6.1e-11 1 CL0229
Cotton_A_03981_CDS 42 373 41 375 PF00657.22 Lipase_GDSL Family 2 198 200 55.5 7.3e-15 1 CL0264
Cotton_A_10555_CDS 72 347 68 350 PF07714.17 Pkinase_Tyr Domain 5 256 259 157.0 5.1e-46 1 CL0016
Cotton_A_14294_CDS 25 72 25 72 PF00249.31 Myb_DNA-binding Domain 1 46 46 53.9 1.5e-14 1 CL0123
Cotton_A_14294_CDS 82 123 78 123 PF00249.31 Myb_DNA-binding Domain 5 46 46 48.7 6.3e-13 1 CL0123
Cotton_A_27808_CDS 332 526 331 550 PF13632.6 Glyco_trans_2_3 Domain 2 192 197 82.9 2.8e-23 1 CL0110
Cotton_A_06946_CDS 285 491 283 493 PF01501.20 Glyco_transf_8 Family 3 253 256 43.7 2.3e-11 1 CL0110
Cotton_A_30943_CDS 84 386 78 388 PF10250.9 O-FucT Family 9 334 336 88.0 9.8e-25 1 CL0113
Cotton_A_35271_CDS 71 230 71 230 PF01233.19 NMT Domain 1 160 160 264.1 3.7e-79 1 CL0257
Cotton_A_35271_CDS 244 422 244 430 PF02799.15 NMT_C Domain 1 189 209 266.7 1.2e-79 1 CL0257
Cotton_A_02709_CDS 470 499 469 499 PF01535.20 PPR Family 2 31 31 11.6 0.26 1 CL0020
Cotton_A_09684_CDS 60 455 52 456 PF00501.28 AMP-binding Family 9 422 423 317.0 1.6e-94 1 CL0378
Cotton_A_09684_CDS 464 540 464 540 PF13193.6 AMP-binding_C Domain 1 76 76 47.5 2.8e-12 1 CL0531
Cotton_A_27181_CDS 30 76 28 77 PF01679.17 Pmp3 Family 3 48 49 51.6 8e-14 1 No_clan
Cotton_A_00511_CDS 114 174 114 174 PF13855.6 LRR_8 Repeat 1 61 61 28.3 1.1e-06 1 CL0022
Cotton_A_00511_CDS 187 207 187 210 PF00560.33 LRR_1 Repeat 1 21 23 11.3 0.42 1 CL0022
Cotton_A_00511_CDS 366 637 363 639 PF00069.25 Pkinase Domain 5 260 264 116.7 1.1e-33 1 CL0016
Cotton_A_01584_CDS 63 295 59 304 PF00398.20 RrnaAD Domain 6 246 265 206.2 4.6e-61 1 CL0063
Cotton_A_04140_CDS 71 351 69 351 PF07714.17 Pkinase_Tyr Domain 3 259 259 153.3 7.3e-45 1 CL0016
Cotton_A_01389_CDS 4 136 2 136 PF00582.26 Usp Domain 3 141 141 48.2 1.6e-12 1 CL0039
Cotton_A_09003_CDS 162 210 157 210 PF17830.1 STI1 Domain 6 55 55 35.7 6.1e-09 1 No_clan
Cotton_A_09003_CDS 241 332 240 332 PF12796.7 Ank_2 Repeat 2 83 83 59.9 2.8e-16 1 CL0465
Cotton_A_21339_CDS 151 310 108 314 PF10483.9 Elong_Iki1 Family 90 280 298 43.6 2.6e-11 1 CL0023
Cotton_A_18623_CDS 9 52 9 53 PF00173.28 Cyt-b5 Domain 1 44 74 57.5 1.1e-15 1 No_clan
Cotton_A_18623_CDS 90 142 89 143 PF14416.6 PMR5N Domain 2 52 53 82.1 2.6e-23 1 No_clan
Cotton_A_23852_CDS 12 266 12 266 PF00069.25 Pkinase Domain 1 264 264 247.1 1.9e-73 1 CL0016
Cotton_A_23852_CDS 307 364 306 365 PF03822.14 NAF Domain 2 53 54 74.7 4.9e-21 1 CL0573
Cotton_A_35109_CDS 132 371 130 375 PF00481.21 PP2C Family 3 254 258 195.6 1.1e-57 1 CL0238
Cotton_A_23027_CDS 226 251 226 252 PF00642.24 zf-CCCH Family 1 26 27 45.7 4.2e-12 1 CL0537
Cotton_A_23663_CDS 18 82 18 87 PF00076.22 RRM_1 Domain 1 63 70 52.9 2.3e-14 1 CL0221
Cotton_A_06077_CDS 55 112 53 112 PF13855.6 LRR_8 Repeat 3 61 61 32.0 7.5e-08 1 CL0022
Cotton_A_27038_CDS 50 88 48 89 PF08263.12 LRRNT_2 Family 3 40 41 37.5 2.2e-09 1 No_clan
Cotton_A_27038_CDS 354 412 354 414 PF13855.6 LRR_8 Repeat 1 59 61 29.4 5.1e-07 1 CL0022
Cotton_A_27038_CDS 713 980 711 982 PF00069.25 Pkinase Domain 3 260 264 150.5 5.5e-44 1 CL0016
Cotton_A_33947_CDS 14 56 13 56 PF13639.6 zf-RING_2 Domain 2 44 44 55.6 4.9e-15 1 CL0229
Cotton_A_11658_CDS 100 225 99 225 PF04134.12 DUF393 Family 2 113 113 62.9 6.6e-17 1 No_clan
Cotton_A_29714_CDS 6 60 6 67 PF06694.11 Plant_NMP1 Family 1 55 318 104.7 4.9e-30 1 No_clan
Cotton_A_12089_CDS 3 74 3 74 PF00240.23 ubiquitin Domain 1 72 72 115.4 7.1e-34 1 CL0072
Cotton_A_12089_CDS 79 150 79 150 PF00240.23 ubiquitin Domain 1 72 72 115.4 7.1e-34 1 CL0072
Cotton_A_12089_CDS 155 226 155 226 PF00240.23 ubiquitin Domain 1 72 72 115.4 7.1e-34 1 CL0072
Cotton_A_31302_CDS 5 89 5 90 PF01221.18 Dynein_light Domain 1 85 86 102.8 9.4e-30 1 No_clan
Cotton_A_12830_CDS 176 201 173 202 PF01535.20 PPR Family 5 30 31 14.1 0.042 1 CL0020
Cotton_A_12830_CDS 204 251 204 253 PF13041.6 PPR_2 Repeat 1 48 50 55.7 4e-15 1 CL0020
Cotton_A_12830_CDS 277 307 277 307 PF01535.20 PPR Family 1 31 31 10.6 0.56 1 CL0020
Cotton_A_12830_CDS 309 358 309 358 PF13041.6 PPR_2 Repeat 1 50 50 43.9 2e-11 1 CL0020
Cotton_A_12830_CDS 379 428 379 428 PF13041.6 PPR_2 Repeat 1 50 50 64.0 1.1e-17 1 CL0020
Cotton_A_12830_CDS 449 498 449 498 PF13041.6 PPR_2 Repeat 1 50 50 54.2 1.2e-14 1 CL0020
Cotton_A_12830_CDS 523 567 519 568 PF13041.6 PPR_2 Repeat 5 49 50 32.8 6e-08 1 CL0020
Cotton_A_08940_CDS 53 93 52 95 PF00432.21 Prenyltrans Repeat 2 42 44 46.0 3.1e-12 1 CL0059
Cotton_A_08940_CDS 101 142 100 142 PF00432.21 Prenyltrans Repeat 2 43 44 45.3 5.2e-12 1 CL0059
Cotton_A_08940_CDS 148 191 148 191 PF00432.21 Prenyltrans Repeat 1 44 44 57.0 1.1e-15 1 CL0059
Cotton_A_08940_CDS 197 239 196 239 PF00432.21 Prenyltrans Repeat 2 44 44 45.5 4.4e-12 1 CL0059
Cotton_A_08940_CDS 244 288 244 288 PF00432.21 Prenyltrans Repeat 1 44 44 50.4 1.3e-13 1 CL0059
Cotton_A_11795_CDS 77 242 75 245 PF01327.21 Pep_deformylase Domain 3 156 159 160.7 2.1e-47 1 No_clan
Cotton_A_24697_CDS 88 218 76 228 PF00067.22 p450 Domain 209 339 463 88.9 3e-25 1 No_clan
Cotton_A_00230_CDS 102 412 102 412 PF00225.23 Kinesin Domain 1 333 333 335.0 3.9e-100 1 CL0023
Cotton_A_15188_CDS 75 217 75 218 PF00810.18 ER_lumen_recept Family 1 146 147 135.3 2.8e-39 1 CL0141
Cotton_A_38507_CDS 60 132 60 132 PF04640.14 PLATZ Family 1 82 82 97.7 4.5e-28 1 No_clan
Cotton_A_15443_CDS 172 297 150 301 PF00291.25 PALP Family 58 184 294 128.4 3.5e-37 1 CL0063
Cotton_A_14863_CDS 36 78 28 79 PF00646.33 F-box Domain 5 47 48 36.0 4.5e-09 1 CL0271
Cotton_A_04052_CDS 66 150 66 151 PF03330.18 DPBB_1 Domain 1 82 83 78.9 2.6e-22 1 CL0199
Cotton_A_04052_CDS 162 239 162 239 PF01357.21 Pollen_allerg_1 Domain 1 80 80 102.6 8.7e-30 1 CL0159
Cotton_A_16434_CDS 160 448 107 454 PF00225.23 Kinesin Domain 34 327 333 177.9 2.5e-52 1 CL0023
Cotton_A_00146_CDS 1 301 1 301 PF00083.24 Sugar_tr Family 173 452 452 211.1 2.7e-62 1 CL0015
Cotton_A_00146_CDS 363 806 363 806 PF00083.24 Sugar_tr Family 1 452 452 329.8 2.7e-98 1 CL0015
Cotton_A_16575_CDS 38 369 38 374 PF00067.22 p450 Domain 1 349 463 108.1 4.5e-31 1 No_clan
Cotton_A_05880_CDS 334 380 332 380 PF00010.26 HLH Domain 4 53 53 50.6 1.4e-13 1 No_clan
Cotton_A_20076_CDS 34 73 33 73 PF08263.12 LRRNT_2 Family 2 41 41 40.6 2.2e-10 1 No_clan
Cotton_A_20076_CDS 539 598 538 598 PF13855.6 LRR_8 Repeat 2 61 61 33.7 2.3e-08 1 CL0022
Cotton_A_20076_CDS 819 1084 815 1086 PF00069.25 Pkinase Domain 5 259 264 162.6 1.1e-47 1 CL0016
Cotton_A_06176_CDS 231 279 231 280 PF13041.6 PPR_2 Repeat 1 49 50 37.3 2.3e-09 1 CL0020
Cotton_A_06176_CDS 333 380 332 381 PF13041.6 PPR_2 Repeat 2 49 50 32.2 8.8e-08 1 CL0020
Cotton_A_06176_CDS 432 480 432 481 PF13041.6 PPR_2 Repeat 1 49 50 36.5 4.2e-09 1 CL0020
Cotton_A_06176_CDS 534 581 534 581 PF13041.6 PPR_2 Repeat 1 48 50 34.2 2.1e-08 1 CL0020
Cotton_A_06176_CDS 610 632 609 635 PF01535.20 PPR Family 3 25 31 13.2 0.082 1 CL0020
Cotton_A_28701_CDS 941 1072 934 1076 PF02622.15 DUF179 Family 8 138 160 62.1 5.8e-17 1 No_clan
Cotton_A_29671_CDS 42 219 35 220 PF00501.28 AMP-binding Family 9 187 423 122.2 2.1e-35 1 CL0378
Cotton_A_20441_CDS 14 275 13 276 PF01940.16 DUF92 Family 2 235 236 252.6 3.1e-75 1 No_clan
Cotton_A_19069_CDS 122 165 121 165 PF13639.6 zf-RING_2 Domain 2 44 44 51.8 7.3e-14 1 CL0229
Cotton_A_36412_CDS 98 117 98 120 PF03106.15 WRKY Domain 1 20 59 28.4 1.4e-06 1 CL0274
Cotton_A_20919_CDS 1 95 1 95 PF00012.20 HSP70 Family 510 599 599 40.7 9.1e-11 1 CL0108
Cotton_A_06545_CDS 35 482 35 489 PF00067.22 p450 Domain 1 456 463 306.8 2.4e-91 1 No_clan
Cotton_A_07343_CDS 36 320 27 333 PF03348.15 Serinc Family 14 307 429 190.1 6.3e-56 1 No_clan
Cotton_A_07343_CDS 332 406 318 407 PF03348.15 Serinc Family 352 428 429 59.8 2.2e-16 1 No_clan
Cotton_A_33986_CDS 4 217 2 229 PF05056.12 DUF674 Family 3 234 449 106.9 1.1e-30 1 No_clan
Cotton_A_16758_CDS 70 147 69 147 PF13510.6 Fer2_4 Domain 2 82 82 64.4 7.1e-18 1 CL0486
Cotton_A_16758_CDS 153 190 153 192 PF10588.9 NADH-G_4Fe-4S_3 Domain 1 38 40 56.6 1.3e-15 1 No_clan
Cotton_A_16758_CDS 341 660 341 661 PF00384.22 Molybdopterin Family 1 431 432 241.6 1.5e-71 1 No_clan
Cotton_A_16758_CDS 701 736 690 736 PF09326.11 NADH_dhqG_C Family 16 51 51 50.2 3.1e-13 1 No_clan
Cotton_A_10079_CDS 30 148 29 152 PF00329.19 Complex1_30kDa Family 2 118 122 113.6 8.3e-33 1 No_clan
Cotton_A_27180_CDS 142 422 85 433 PF00295.17 Glyco_hydro_28 Domain 51 320 325 133.9 6.2e-39 1 CL0268
Cotton_A_14091_CDS 140 324 134 325 PF04427.18 Brix Domain 8 192 193 111.9 4e-32 1 CL0458
Cotton_A_30788_CDS 47 279 43 280 PF00141.23 peroxidase Domain 5 228 229 209.8 4.4e-62 1 CL0617
Cotton_A_38867_CDS 152 264 139 266 PF00069.25 Pkinase Domain 154 259 264 36.2 4.1e-09 1 CL0016
Cotton_A_25129_CDS 25 51 25 51 PF09282.10 Mago-bind Domain 1 27 27 49.1 3.6e-13 1 No_clan
Cotton_A_07395_CDS 3 402 1 425 PF00067.22 p450 Domain 39 441 463 300.2 2.5e-89 1 No_clan
Cotton_A_05269_CDS 9 412 6 412 PF03348.15 Serinc Family 1 429 429 386.6 1.5e-115 1 No_clan
Cotton_A_33495_CDS 69 135 2 136 PF02458.15 Transferase Family 364 427 434 48.6 4.7e-13 1 CL0149
Cotton_A_04420_CDS 207 264 205 266 PF00170.21 bZIP_1 Family 5 62 64 35.1 1e-08 1 CL0018
Cotton_A_01433_CDS 14 75 14 87 PF00071.22 Ras Domain 1 62 162 74.6 6.7e-21 1 CL0023
Cotton_A_01433_CDS 99 199 96 200 PF00071.22 Ras Domain 61 161 162 108.3 2.8e-31 1 CL0023
Cotton_A_00249_CDS 7 66 7 67 PF03931.15 Skp1_POZ Domain 1 62 63 81.9 2.7e-23 1 CL0033
Cotton_A_00249_CDS 105 152 105 152 PF01466.19 Skp1 Domain 1 48 48 98.6 1.5e-28 1 No_clan
Cotton_A_10954_CDS 17 91 16 106 PF03619.16 Solute_trans_a Family 2 76 265 32.2 7.5e-08 1 No_clan
Cotton_A_12675_CDS 460 747 457 747 PF00069.25 Pkinase Domain 4 264 264 125.1 3e-36 1 CL0016
Cotton_A_12675_CDS 753 879 753 879 PF06479.12 Ribonuc_2-5A Family 1 127 127 151.1 1.6e-44 1 No_clan
Cotton_A_22264_CDS 81 677 73 677 PF07575.13 Nucleopor_Nup85 Family 10 568 568 502.9 1.2e-150 1 No_clan
Cotton_A_00431_CDS 26 218 26 232 PF00573.22 Ribosomal_L4 Family 1 146 192 85.9 2.8e-24 1 No_clan
Cotton_A_08596_CDS 98 171 96 171 PF09262.11 PEX-1N Domain 3 77 77 82.1 2.8e-23 1 CL0402
Cotton_A_08596_CDS 589 735 589 736 PF00004.29 AAA Domain 1 131 132 62.6 5e-17 1 CL0023
Cotton_A_08596_CDS 877 1004 877 1007 PF00004.29 AAA Domain 1 129 132 132.1 1.6e-38 1 CL0023
Cotton_A_08596_CDS 1029 1065 1029 1078 PF17862.1 AAA_lid_3 Domain 1 37 45 41.6 7.9e-11 1 CL0671
Cotton_A_14435_CDS 274 657 272 684 PF07690.16 MFS_1 Family 4 338 353 79.9 1.7e-22 1 CL0015
Cotton_A_19381_CDS 122 176 122 176 PF12838.7 Fer4_7 Domain 1 52 52 52.4 5.7e-14 1 CL0344
Cotton_A_19374_CDS 35 244 35 244 PF00314.17 Thaumatin Domain 1 214 214 274.1 7.8e-82 1 CL0293
Cotton_A_15552_CDS 27 101 26 102 PF01253.22 SUI1 Domain 2 76 77 83.8 8.8e-24 1 No_clan
Cotton_A_06324_CDS 15 139 15 139 PF02365.15 NAM Family 1 126 126 126.6 1.1e-36 1 No_clan
Cotton_A_06945_CDS 29 57 29 57 PF00036.32 EF-hand_1 Domain 1 29 29 32.9 2.6e-08 1 CL0220
Cotton_A_06945_CDS 71 89 69 90 PF13202.6 EF-hand_5 Domain 6 24 25 24.5 1.3e-05 1 CL0220
Cotton_A_20166_CDS 94 413 94 414 PF16363.5 GDP_Man_Dehyd Domain 1 331 332 170.0 8.9e-50 1 CL0063
Cotton_A_17968_CDS 59 96 27 117 PF01342.21 SAND Family 26 63 77 22.6 6.4e-05 1 No_clan
Cotton_A_25444_CDS 26 63 21 67 PF13857.6 Ank_5 Repeat 6 43 56 29.4 6.8e-07 1 CL0465
Cotton_A_25444_CDS 70 122 70 122 PF13637.6 Ank_4 Repeat 2 55 55 56.3 3.1e-15 1 CL0465
Cotton_A_10629_CDS 210 284 210 284 PF17958.1 EF-hand_13 Domain 1 90 90 61.8 4e-17 1 CL0220
Cotton_A_10629_CDS 311 367 215 368 PF13499.6 EF-hand_7 Domain 35 70 71 30.1 4.8e-07 1 CL0220
Cotton_A_06681_CDS 90 236 89 240 PF10358.9 NT-C2 Family 2 142 146 59.2 3.6e-16 1 CL0154
Cotton_A_14428_CDS 10 57 10 57 PF00319.18 SRF-TF Domain 1 48 48 93.9 2.9e-27 1 No_clan
Cotton_A_37655_CDS 6 100 1 103 PF13419.6 HAD_2 Family 79 174 178 51.7 1.1e-13 1 CL0137
Cotton_A_12194_CDS 148 186 148 188 PF13374.6 TPR_10 Repeat 1 39 42 26.4 4.3e-06 1 CL0020
Cotton_A_12194_CDS 191 339 185 388 PF17874.1 TPR_MalT Domain 40 187 336 31.7 9.9e-08 1 CL0020
Cotton_A_12697_CDS 230 361 225 373 PF00675.20 Peptidase_M16 Family 6 133 149 74.3 9.8e-21 1 CL0094
Cotton_A_12697_CDS 379 617 379 617 PF05193.21 Peptidase_M16_C Domain 1 183 183 136.7 8.6e-40 1 CL0094
Cotton_A_12697_CDS 948 1174 948 1174 PF05193.21 Peptidase_M16_C Domain 1 183 183 129.9 1.1e-37 1 CL0094
Cotton_A_12402_CDS 41 74 39 77 PF07939.11 DUF1685 Family 3 35 60 27.0 2.8e-06 1 No_clan
Cotton_A_00435_CDS 34 98 33 98 PF00808.23 CBFD_NFYB_HMF Domain 2 65 65 98.7 1.7e-28 1 CL0012
Cotton_A_00034_CDS 98 358 94 358 PF06472.15 ABC_membrane_2 Family 6 269 269 192.9 6.9e-57 1 CL0241
Cotton_A_00034_CDS 469 674 468 674 PF00005.27 ABC_tran Domain 2 137 137 65.3 7.7e-18 1 CL0023
Cotton_A_02893_CDS 130 261 130 262 PF00004.29 AAA Domain 1 131 132 135.4 1.5e-39 1 CL0023
Cotton_A_02893_CDS 287 320 285 328 PF17862.1 AAA_lid_3 Domain 4 37 45 35.6 5.8e-09 1 CL0671
Cotton_A_38562_CDS 17 178 17 179 PF00071.22 Ras Domain 1 161 162 176.5 3e-52 1 CL0023
Cotton_A_07220_CDS 41 126 35 152 PF01426.18 BAH Domain 7 89 122 38.3 1e-09 1 No_clan
Cotton_A_29220_CDS 42 119 41 126 PF12796.7 Ank_2 Repeat 2 67 83 27.6 3.3e-06 1 CL0465
Cotton_A_29220_CDS 121 195 114 196 PF12796.7 Ank_2 Repeat 12 67 83 29.4 9.2e-07 1 CL0465
Cotton_A_09776_CDS 115 314 100 334 PF00696.28 AA_kinase Family 18 208 241 43.5 2.8e-11 1 No_clan
Cotton_A_09776_CDS 486 555 457 567 PF00583.25 Acetyltransf_1 Family 31 101 117 39.4 6e-10 1 CL0257
Cotton_A_37379_CDS 50 109 48 110 PF04083.16 Abhydro_lipase Family 3 62 64 62.2 2.5e-17 1 CL0028
Cotton_A_07828_CDS 355 466 353 481 PF03385.17 STELLO Family 3 117 388 40.0 2.1e-10 1 CL0110
Cotton_A_14746_CDS 224 335 222 338 PF00730.25 HhH-GPD Domain 3 90 108 28.2 2e-06 1 CL0198
Cotton_A_29333_CDS 162 276 161 277 PF01426.18 BAH Domain 2 121 122 53.7 1.7e-14 1 No_clan
Cotton_A_29333_CDS 444 478 426 481 PF00385.24 Chromo Domain 16 51 54 42.2 5.4e-11 1 CL0049
Cotton_A_29333_CDS 490 819 475 822 PF00145.17 DNA_methylase Domain 58 331 335 123.4 1.2e-35 1 CL0063
Cotton_A_11307_CDS 14 107 14 112 PF03195.14 LOB Family 1 94 99 104.3 4.1e-30 1 No_clan
Cotton_A_31096_CDS 194 347 193 367 PF00069.25 Pkinase Domain 2 152 264 124.8 3.9e-36 1 CL0016
Cotton_A_31096_CDS 427 530 414 530 PF00069.25 Pkinase Domain 154 264 264 73.4 1.9e-20 1 CL0016
Cotton_A_20811_CDS 22 114 21 116 PF01657.17 Stress-antifung Family 2 93 95 68.0 8.7e-19 1 No_clan
Cotton_A_20811_CDS 135 228 129 229 PF01657.17 Stress-antifung Family 6 94 95 50.9 1.8e-13 1 No_clan
Cotton_A_20811_CDS 334 600 333 602 PF00069.25 Pkinase Domain 2 258 264 154.1 4.3e-45 1 CL0016
Cotton_A_16411_CDS 82 953 82 955 PF05911.11 FPP Coiled-coil 1 865 867 1094.1 0 1 No_clan
Cotton_A_21633_CDS 1 167 1 167 PF13561.6 adh_short_C2 Domain 73 234 234 121.7 3.4e-35 1 CL0063
Cotton_A_20125_CDS 28 170 27 170 PF00056.23 Ldh_1_N Family 2 141 141 165.9 5.4e-49 1 CL0063
Cotton_A_20125_CDS 172 316 172 323 PF02866.18 Ldh_1_C Domain 1 147 167 151.1 2.6e-44 1 CL0341
Cotton_A_24318_CDS 21 46 21 47 PF13181.6 TPR_8 Repeat 8 33 34 16.4 0.0072 1 CL0020
Cotton_A_24318_CDS 83 111 82 111 PF13181.6 TPR_8 Repeat 2 30 34 16.8 0.0058 1 CL0020
Cotton_A_24318_CDS 204 276 204 276 PF04564.15 U-box Domain 1 73 73 97.5 3.7e-28 1 CL0229
Cotton_A_27543_CDS 80 169 79 181 PF03168.13 LEA_2 Domain 2 91 101 31.3 2.3e-07 1 CL0159
Cotton_A_07589_CDS 401 727 401 729 PF00225.23 Kinesin Domain 1 331 333 337.9 5.2e-101 1 CL0023
Cotton_A_35864_CDS 180 221 180 223 PF15985.5 KH_6 Domain 1 44 46 42.4 6.7e-11 1 CL0007
Cotton_A_03960_CDS 120 276 119 279 PF01764.25 Lipase_3 Family 2 139 142 129.9 6.1e-38 1 CL0028
Cotton_A_11287_CDS 137 295 136 297 PF01764.25 Lipase_3 Family 2 140 142 125.8 1.1e-36 1 CL0028
Cotton_A_15028_CDS 147 193 146 194 PF13041.6 PPR_2 Repeat 2 48 50 35.0 1.2e-08 1 CL0020
Cotton_A_15028_CDS 221 245 220 248 PF01535.20 PPR Family 2 26 31 15.2 0.019 1 CL0020
Cotton_A_15028_CDS 251 280 251 281 PF01535.20 PPR Family 1 30 31 21.8 0.00014 1 CL0020
Cotton_A_15028_CDS 350 397 349 398 PF13041.6 PPR_2 Repeat 2 49 50 39.5 4.6e-10 1 CL0020
Cotton_A_15028_CDS 451 497 450 499 PF13041.6 PPR_2 Repeat 2 48 50 32.0 1.1e-07 1 CL0020
Cotton_A_15028_CDS 513 551 508 555 PF13812.6 PPR_3 Repeat 6 44 63 19.0 0.0011 1 CL0020
Cotton_A_15028_CDS 552 599 551 600 PF13041.6 PPR_2 Repeat 2 49 50 39.9 3.5e-10 1 CL0020
Cotton_A_15028_CDS 652 692 652 700 PF13041.6 PPR_2 Repeat 1 41 50 33.3 4.1e-08 1 CL0020
Cotton_A_15028_CDS 753 801 753 802 PF13041.6 PPR_2 Repeat 1 49 50 39.3 5.3e-10 1 CL0020
Cotton_A_15028_CDS 929 1051 927 1051 PF14432.6 DYW_deaminase Family 3 127 127 123.3 5.2e-36 1 CL0109
Cotton_A_24206_CDS 18 90 17 90 PF05641.12 Agenet Domain 6 61 61 37.9 1.9e-09 1 CL0049
Cotton_A_20252_CDS 13 137 12 139 PF01014.18 Uricase Domain 2 129 131 93.1 1.6e-26 1 CL0334
Cotton_A_20252_CDS 149 299 148 299 PF01014.18 Uricase Domain 2 131 131 84.1 9.9e-24 1 CL0334
Cotton_A_17168_CDS 75 158 75 160 PF02727.16 Cu_amine_oxidN2 Domain 1 85 87 68.3 5.2e-19 1 CL0047
Cotton_A_17168_CDS 468 709 461 711 PF01179.20 Cu_amine_oxid Domain 170 408 410 232.3 9.5e-69 1 CL0103
Cotton_A_15399_CDS 67 230 67 231 PF10237.9 N6-adenineMlase Family 1 159 160 169.9 3.6e-50 1 CL0063
Cotton_A_20176_CDS 3 178 1 182 PF00955.21 HCO3_cotransp Family 3 172 508 127.7 5.6e-37 1 CL0062
Cotton_A_20176_CDS 197 375 182 388 PF00955.21 HCO3_cotransp Family 241 414 508 101.5 4.9e-29 1 CL0062
Cotton_A_20176_CDS 453 543 449 544 PF00955.21 HCO3_cotransp Family 423 507 508 67.8 8e-19 1 CL0062
Cotton_A_38029_CDS 27 77 27 77 PF14237.6 GYF_2 Domain 1 50 50 57.1 1.1e-15 1 CL0673
Cotton_A_38029_CDS 280 352 280 354 PF00076.22 RRM_1 Domain 1 64 70 35.3 7.3e-09 1 CL0221
Cotton_A_38029_CDS 433 488 431 488 PF00076.22 RRM_1 Domain 12 70 70 31.2 1.4e-07 1 CL0221
Cotton_A_21375_CDS 161 390 152 391 PF00931.22 NB-ARC Domain 11 251 252 154.4 3.1e-45 1 CL0023
Cotton_A_08706_CDS 150 182 148 182 PF00806.19 PUF Repeat 3 35 35 25.0 1e-05 1 CL0020
Cotton_A_08706_CDS 185 217 184 218 PF00806.19 PUF Repeat 2 34 35 32.3 4.7e-08 1 CL0020
Cotton_A_08706_CDS 228 256 227 258 PF00806.19 PUF Repeat 6 34 35 22.9 4.5e-05 1 CL0020
Cotton_A_08706_CDS 332 361 332 365 PF00806.19 PUF Repeat 1 31 35 28.8 5.9e-07 1 CL0020
Cotton_A_08706_CDS 369 402 368 402 PF00806.19 PUF Repeat 2 35 35 23.9 2.2e-05 1 CL0020
Cotton_A_30253_CDS 10 310 10 310 PF05623.12 DUF789 Family 1 294 294 358.1 4.5e-107 1 No_clan
Cotton_A_09561_CDS 171 588 169 590 PF00860.20 Xan_ur_permease Family 5 387 389 234.4 1.7e-69 1 CL0062
Cotton_A_06081_CDS 52 173 28 174 PF04756.13 OST3_OST6 Family 176 291 293 41.9 7.4e-11 1 CL0172
Cotton_A_33994_CDS 57 391 54 392 PF01208.17 URO-D Domain 6 345 346 354.4 6.2e-106 1 CL0160
Cotton_A_10840_CDS 14 60 12 60 PF00010.26 HLH Domain 4 53 53 39.1 5.1e-10 1 No_clan
Cotton_A_36800_CDS 88 186 88 186 PF04526.13 DUF568 Family 1 101 101 77.0 1.5e-21 1 No_clan
Cotton_A_36800_CDS 206 331 206 334 PF03188.16 Cytochrom_B561 Family 1 130 137 26.5 5.8e-06 1 CL0328
Cotton_A_35537_CDS 85 284 85 284 PF07847.12 PCO_ADO Family 1 201 201 249.2 2.4e-74 1 CL0029
Cotton_A_32684_CDS 87 291 86 292 PF14381.6 EDR1 Family 2 199 200 230.7 1.2e-68 1 CL0125
Cotton_A_32684_CDS 479 732 478 732 PF07714.17 Pkinase_Tyr Domain 2 259 259 223.1 3.6e-66 1 CL0016
Cotton_A_20340_CDS 19 156 15 160 PF00892.20 EamA Family 5 133 137 47.7 1.6e-12 1 CL0184
Cotton_A_20340_CDS 189 326 188 328 PF00892.20 EamA Family 2 135 137 52.9 4.3e-14 1 CL0184
Cotton_A_40771_CDS 42 91 41 91 PF00010.26 HLH Domain 2 53 53 57.6 8.8e-16 1 No_clan
Cotton_A_14530_CDS 48 207 48 208 PF01554.18 MatE Family 1 160 161 110.8 5e-32 1 CL0222
Cotton_A_14530_CDS 269 430 269 431 PF01554.18 MatE Family 1 159 161 116.8 6.9e-34 1 CL0222
Cotton_A_20417_CDS 36 72 35 73 PF08263.12 LRRNT_2 Family 2 40 41 29.0 9.9e-07 1 No_clan
Cotton_A_20417_CDS 107 165 100 166 PF13855.6 LRR_8 Repeat 2 60 61 35.8 5e-09 1 CL0022
Cotton_A_20417_CDS 323 342 323 345 PF00560.33 LRR_1 Repeat 1 20 23 11.2 0.48 1 CL0022
Cotton_A_20417_CDS 469 487 469 491 PF00560.33 LRR_1 Repeat 1 19 23 10.4 0.88 1 CL0022
Cotton_A_20417_CDS 579 638 578 638 PF13855.6 LRR_8 Repeat 2 61 61 40.1 2.3e-10 1 CL0022
Cotton_A_20417_CDS 771 1038 770 1040 PF00069.25 Pkinase Domain 2 259 264 150.6 5e-44 1 CL0016
Cotton_A_26099_CDS 1 403 1 406 PF00421.19 PSII Family 37 504 507 433.4 1.1e-129 1 No_clan
Cotton_A_21081_CDS 146 243 136 253 PF03018.14 Dirigent Family 13 112 148 69.1 3.3e-19 1 CL0650
Cotton_A_09358_CDS 466 485 464 485 PF18044.1 zf-CCCH_4 Domain 3 22 22 24.8 1.3e-05 1 CL0537
Cotton_A_19441_CDS 49 132 28 133 PF14363.6 AAA_assoc Family 8 94 96 54.6 1.1e-14 1 No_clan
Cotton_A_19441_CDS 248 385 247 386 PF00004.29 AAA Domain 2 131 132 58.7 7.8e-16 1 CL0023
Cotton_A_05326_CDS 56 83 56 86 PF00641.18 zf-RanBP Domain 1 26 30 24.4 1.3e-05 1 CL0167
Cotton_A_05326_CDS 111 140 111 141 PF00641.18 zf-RanBP Domain 1 28 30 40.2 1.5e-10 1 CL0167
Cotton_A_09918_CDS 83 163 83 168 PF02727.16 Cu_amine_oxidN2 Domain 1 81 87 72.7 2.1e-20 1 CL0047
Cotton_A_09918_CDS 175 274 175 274 PF02728.16 Cu_amine_oxidN3 Domain 1 101 101 95.0 2.9e-27 1 CL0047
Cotton_A_09918_CDS 299 719 298 720 PF01179.20 Cu_amine_oxid Domain 2 409 410 449.1 1.4e-134 1 CL0103
Cotton_A_11064_CDS 27 107 17 111 PF00011.21 HSP20 Family 11 99 102 32.7 6.3e-08 1 CL0190
Cotton_A_04517_CDS 31 143 30 145 PF07732.15 Cu-oxidase_3 Domain 3 117 119 127.8 2e-37 1 CL0026
Cotton_A_04517_CDS 157 304 155 305 PF00394.22 Cu-oxidase Domain 3 157 159 113.1 1.3e-32 1 CL0026
Cotton_A_04517_CDS 432 543 409 544 PF07731.14 Cu-oxidase_2 Domain 29 136 137 121.9 1.5e-35 1 CL0026
Cotton_A_02785_CDS 182 451 177 451 PF00928.21 Adap_comp_sub Family 11 264 264 237.6 1.5e-70 1 CL0448
Cotton_A_14605_CDS 14 57 13 57 PF01585.23 G-patch Family 2 45 45 68.1 4.4e-19 1 CL0449
Cotton_A_36117_CDS 223 287 223 288 PF00076.22 RRM_1 Domain 1 69 70 46.4 2.6e-12 1 CL0221
Cotton_A_36117_CDS 457 565 457 565 PF04059.12 RRM_2 Family 1 97 97 103.6 4.7e-30 1 CL0221
Cotton_A_12060_CDS 19 209 18 212 PF00106.25 adh_short Domain 2 191 195 178.7 8.7e-53 1 CL0063
Cotton_A_34641_CDS 175 339 174 341 PF04802.15 SMK-1 Family 2 167 191 194.8 1.3e-57 1 No_clan
Cotton_A_33296_CDS 26 163 23 167 PF03004.14 Transposase_24 Family 4 138 142 35.6 8.7e-09 1 No_clan
Cotton_A_14982_CDS 45 280 44 281 PF02784.16 Orn_Arg_deC_N Domain 2 246 247 228.7 6.6e-68 1 CL0036
Cotton_A_14982_CDS 68 376 39 376 PF00278.22 Orn_DAP_Arg_deC Domain 5 98 98 51.4 9.5e-14 1 No_clan
Cotton_A_03505_CDS 105 255 101 257 PF04884.14 DUF647 Family 6 160 241 128.1 4.2e-37 1 No_clan
Cotton_A_38056_CDS 67 114 67 114 PF12906.7 RINGv Domain 1 48 48 42.7 4.6e-11 1 CL0229
Cotton_A_36627_CDS 79 108 79 110 PF14383.6 VARLMGL Domain 1 30 32 50.8 8.7e-14 1 No_clan
Cotton_A_36627_CDS 765 901 765 901 PF14309.6 DUF4378 Family 1 158 165 69.0 6.2e-19 1 No_clan
Cotton_A_29786_CDS 89 112 86 112 PF01535.20 PPR Family 8 31 31 12.3 0.15 1 CL0020
Cotton_A_29786_CDS 114 161 114 163 PF13041.6 PPR_2 Repeat 1 48 50 42.8 4.3e-11 1 CL0020
Cotton_A_11074_CDS 31 72 30 73 PF13639.6 zf-RING_2 Domain 2 43 44 34.5 1.8e-08 1 CL0229
Cotton_A_25359_CDS 78 133 68 134 PF00078.27 RVT_1 Family 121 180 222 36.8 2.9e-09 1 CL0027
Cotton_A_04094_CDS 26 88 26 88 PF00280.18 potato_inhibit Domain 1 64 64 83.1 1.6e-23 1 CL0367
Cotton_A_31166_CDS 35 91 34 92 PF02701.15 zf-Dof Family 2 58 59 113.3 4e-33 1 No_clan
Cotton_A_14456_CDS 31 226 31 226 PF00314.17 Thaumatin Domain 1 214 214 213.5 2.6e-63 1 CL0293
Cotton_A_00117_CDS 199 575 198 575 PF00368.18 HMG-CoA_red Family 2 367 367 479.1 8.3e-144 1 No_clan
Cotton_A_17685_CDS 203 287 202 288 PF00564.24 PB1 Domain 2 83 84 70.4 9e-20 1 CL0072
Cotton_A_17685_CDS 1029 1290 1027 1290 PF07714.17 Pkinase_Tyr Domain 3 259 259 208.5 1e-61 1 CL0016
Cotton_A_18902_CDS 20 56 20 58 PF02736.19 Myosin_N Domain 1 37 40 37.1 2e-09 1 CL0010
Cotton_A_18902_CDS 74 607 74 619 PF00063.21 Myosin_head Domain 1 536 677 729.4 3.7e-219 1 CL0023
Cotton_A_25447_CDS 34 338 34 341 PF01301.19 Glyco_hydro_35 Domain 1 313 316 374.8 4.4e-112 1 CL0058
Cotton_A_25447_CDS 348 419 348 419 PF17834.1 GHD Domain 1 72 72 93.7 5.3e-27 1 CL0369
Cotton_A_23095_CDS 29 122 26 122 PF02678.16 Pirin Family 4 108 108 110.4 4.1e-32 1 CL0029
Cotton_A_23095_CDS 175 279 175 280 PF05726.13 Pirin_C Domain 1 103 104 118.8 1.2e-34 1 CL0029
Cotton_A_07004_CDS 26 312 23 313 PF08392.12 FAE1_CUT1_RppA Family 4 289 290 385.6 1.3e-115 1 CL0046
Cotton_A_07004_CDS 338 421 331 422 PF08541.10 ACP_syn_III_C Domain 9 89 90 51.2 1.1e-13 1 CL0046
Cotton_A_32721_CDS 132 188 131 189 PF03106.15 WRKY Domain 2 58 59 89.6 1.1e-25 1 CL0274
Cotton_A_19680_CDS 1 58 1 59 PF04783.12 DUF630 Family 1 58 59 73.8 9.1e-21 1 No_clan
Cotton_A_19680_CDS 211 511 211 512 PF04782.12 DUF632 Family 1 309 310 260.1 2.8e-77 1 No_clan
Cotton_A_01478_CDS 68 530 68 530 PF00171.22 Aldedh Family 1 462 462 602.8 3.3e-181 1 CL0099
Cotton_A_13435_CDS 44 109 44 126 PF01627.23 Hpt Family 1 63 85 39.9 3.8e-10 1 No_clan
Cotton_A_11588_CDS 22 394 20 399 PF01490.18 Aa_trans Family 3 385 409 309.4 3e-92 1 CL0062
Cotton_A_11588_CDS 441 835 440 838 PF01490.18 Aa_trans Family 2 406 409 366.9 1.1e-109 1 CL0062
Cotton_A_12027_CDS 7 94 4 117 PF01412.18 ArfGap Domain 4 91 117 115.1 1.7e-33 1 No_clan
Cotton_A_16544_CDS 31 144 31 145 PF03859.16 CG-1 Domain 1 115 116 155.9 3.2e-46 1 No_clan
Cotton_A_10888_CDS 68 160 68 186 PF01926.23 MMR_HSR1 Family 1 93 114 72.9 2.1e-20 1 CL0023
Cotton_A_10888_CDS 188 293 188 293 PF16897.5 MMR_HSR1_Xtn Family 1 106 106 143.2 2.4e-42 1 No_clan
Cotton_A_10888_CDS 295 368 294 368 PF02824.21 TGS Family 2 60 60 83.6 7.2e-24 1 CL0072
Cotton_A_24686_CDS 34 495 34 500 PF00067.22 p450 Domain 1 456 463 282.5 5.8e-84 1 No_clan
Cotton_A_01899_CDS 14 219 13 224 PF00194.21 Carb_anhydrase Domain 2 228 254 125.7 2.2e-36 1 No_clan
Cotton_A_22309_CDS 52 107 40 107 PF03765.15 CRAL_TRIO_N Domain 2 54 54 41.4 1.2e-10 1 CL0214
Cotton_A_22309_CDS 129 290 127 291 PF00650.20 CRAL_TRIO Domain 3 158 159 109.8 1e-31 1 CL0512
Cotton_A_01350_CDS 38 143 38 144 PF08240.12 ADH_N Domain 1 108 109 92.3 1.6e-26 1 CL0296
Cotton_A_01350_CDS 184 314 184 316 PF00107.26 ADH_zinc_N Family 1 128 130 89.9 1.3e-25 1 CL0063
Cotton_A_14424_CDS 61 150 59 151 PF01486.17 K-box Family 3 92 93 92.4 1.5e-26 1 No_clan
Cotton_A_38074_CDS 143 474 138 477 PF01619.18 Pro_dh Family 6 292 296 243.4 3.7e-72 1 CL0086
Cotton_A_30649_CDS 187 239 184 258 PF13242.6 Hydrolase_like Domain 4 57 75 23.5 4.4e-05 1 CL0137
Cotton_A_28847_CDS 6 303 6 303 PF01095.19 Pectinesterase Family 1 298 298 414.2 1.9e-124 1 CL0268
Cotton_A_35376_CDS 16 63 16 63 PF00249.31 Myb_DNA-binding Domain 1 46 46 53.6 1.9e-14 1 CL0123
Cotton_A_35376_CDS 69 114 69 114 PF00249.31 Myb_DNA-binding Domain 1 46 46 51.8 6.7e-14 1 CL0123
Cotton_A_33886_CDS 15 152 11 154 PF00892.20 EamA Family 5 135 137 48.1 1.3e-12 1 CL0184
Cotton_A_33886_CDS 188 326 187 327 PF00892.20 EamA Family 2 136 137 58.3 8.8e-16 1 CL0184
Cotton_A_00792_CDS 310 362 308 370 PF00170.21 bZIP_1 Family 5 57 64 46.0 4.1e-12 1 CL0018
Cotton_A_11396_CDS 88 126 82 126 PF00005.27 ABC_tran Domain 99 137 137 42.6 8.3e-11 1 CL0023
Cotton_A_12292_CDS 29 68 26 69 PF08263.12 LRRNT_2 Family 4 40 41 22.2 0.00013 1 No_clan
Cotton_A_12292_CDS 128 185 125 185 PF13855.6 LRR_8 Repeat 4 61 61 36.9 2.2e-09 1 CL0022
Cotton_A_34744_CDS 19 130 19 130 PF00954.20 S_locus_glycop Domain 1 111 111 101.3 4.2e-29 1 No_clan
Cotton_A_34744_CDS 152 218 152 219 PF08276.11 PAN_2 Domain 1 66 67 76.4 1.3e-21 1 CL0168
Cotton_A_34744_CDS 270 534 267 538 PF07714.17 Pkinase_Tyr Domain 4 255 259 161.4 2.5e-47 1 CL0016
Cotton_A_34744_CDS 539 583 539 583 PF11883.8 DUF3403 Family 1 46 46 33.4 3.7e-08 1 No_clan
Cotton_A_00442_CDS 225 299 223 301 PF01868.16 UPF0086 Family 3 78 84 65.3 3.6e-18 1 CL0639
Cotton_A_16895_CDS 5 176 5 177 PF00025.21 Arf Domain 1 174 175 259.6 9.4e-78 1 CL0023
Cotton_A_34316_CDS 64 389 63 390 PF00520.31 Ion_trans Family 2 244 245 130.4 6.3e-38 1 CL0030
Cotton_A_34316_CDS 483 572 480 577 PF00027.29 cNMP_binding Domain 5 84 89 28.4 1.3e-06 1 CL0029
Cotton_A_24351_CDS 171 439 170 441 PF00069.25 Pkinase Domain 2 260 264 163.3 7.1e-48 1 CL0016
Cotton_A_22090_CDS 56 97 53 97 PF01775.17 Ribosomal_L18A Domain 57 98 121 53.6 2.2e-14 1 No_clan
Cotton_A_11711_CDS 14 111 14 117 PF12796.7 Ank_2 Repeat 1 73 83 34.5 2.3e-08 1 CL0465
Cotton_A_28660_CDS 40 178 38 185 PF00069.25 Pkinase Domain 3 132 264 79.0 3.5e-22 1 CL0016
Cotton_A_28660_CDS 252 413 242 413 PF00069.25 Pkinase Domain 136 264 264 79.5 2.5e-22 1 CL0016
Cotton_A_05963_CDS 35 154 34 155 PF05743.13 UEV Domain 2 120 121 81.4 4.6e-23 1 CL0208
Cotton_A_05963_CDS 274 322 266 324 PF09454.10 Vps23_core Domain 11 59 64 58.8 3.6e-16 1 CL0596
Cotton_A_15189_CDS 75 217 75 218 PF00810.18 ER_lumen_recept Family 1 146 147 135.3 2.8e-39 1 CL0141
Cotton_A_33361_CDS 82 134 81 134 PF14416.6 PMR5N Domain 2 53 53 75.7 2.5e-21 1 No_clan
Cotton_A_33361_CDS 135 427 135 428 PF13839.6 PC-Esterase Family 1 282 283 322.4 3.3e-96 1 CL0264
Cotton_A_28079_CDS 36 489 29 491 PF00171.22 Aldedh Family 9 460 462 437.4 5.1e-131 1 CL0099
Cotton_A_34302_CDS 25 89 20 90 PF01282.19 Ribosomal_S24e Family 15 78 79 96.6 6.3e-28 1 No_clan
Cotton_A_37427_CDS 14 416 13 418 PF02458.15 Transferase Family 2 411 434 219.7 5.6e-65 1 CL0149
Cotton_A_32344_CDS 104 617 104 617 PF03141.16 Methyltransf_29 Family 1 506 506 752.5 1.9e-226 1 CL0063
Cotton_A_26661_CDS 44 96 44 96 PF13445.6 zf-RING_UBOX Domain 1 39 39 33.1 4e-08 1 CL0229
Cotton_A_29240_CDS 45 81 44 81 PF02845.16 CUE Family 2 38 42 33.5 2.4e-08 1 CL0214
Cotton_A_29329_CDS 80 128 80 140 PF08282.12 Hydrolase_3 Domain 7 55 255 34.7 1.5e-08 1 CL0137
Cotton_A_35282_CDS 2 42 1 42 PF00240.23 ubiquitin Domain 32 72 72 34.6 1.1e-08 1 CL0072
Cotton_A_35282_CDS 451 610 450 611 PF00632.25 HECT Domain 2 160 307 106.0 2.6e-30 1 CL0552
Cotton_A_34268_CDS 88 170 88 171 PF14547.6 Hydrophob_seed Domain 1 84 85 92.2 1.7e-26 1 CL0482
Cotton_A_26217_CDS 61 124 32 125 PF07732.15 Cu-oxidase_3 Domain 54 118 119 74.8 5.3e-21 1 CL0026
Cotton_A_26217_CDS 137 285 135 286 PF00394.22 Cu-oxidase Domain 3 158 159 144.6 2.6e-42 1 CL0026
Cotton_A_26217_CDS 388 518 384 519 PF07731.14 Cu-oxidase_2 Domain 5 136 137 133.0 5.7e-39 1 CL0026
Cotton_A_26744_CDS 27 164 27 169 PF04043.15 PMEI Domain 1 149 154 68.4 8.6e-19 1 No_clan
Cotton_A_09720_CDS 93 212 93 214 PF09335.11 SNARE_assoc Family 1 118 120 66.6 2.6e-18 1 No_clan
Cotton_A_38632_CDS 2 64 1 95 PF00860.20 Xan_ur_permease Family 15 78 389 26.8 2e-06 1 CL0062
Cotton_A_38632_CDS 142 399 126 401 PF00860.20 Xan_ur_permease Family 79 326 389 121.6 3.1e-35 1 CL0062
Cotton_A_07040_CDS 53 214 53 214 PF16486.5 ArgoN Domain 1 138 138 113.0 1.6e-32 1 No_clan
Cotton_A_07040_CDS 226 274 225 275 PF08699.10 ArgoL1 Domain 2 51 52 60.4 9.7e-17 1 No_clan
Cotton_A_07040_CDS 280 411 280 412 PF02170.22 PAZ Domain 1 136 137 93.3 1.1e-26 1 CL0638
Cotton_A_07040_CDS 421 466 421 467 PF16488.5 ArgoL2 Family 1 46 47 45.5 6.8e-12 1 No_clan
Cotton_A_07040_CDS 566 873 565 873 PF02171.17 Piwi Family 2 302 302 346.5 1.2e-103 1 CL0219
Cotton_A_17256_CDS 125 243 121 245 PF00931.22 NB-ARC Domain 6 130 252 88.7 3.3e-25 1 CL0023
Cotton_A_06370_CDS 234 265 232 265 PF12854.7 PPR_1 Repeat 3 34 34 53.6 1.3e-14 1 CL0020
Cotton_A_06370_CDS 267 299 267 300 PF12854.7 PPR_1 Repeat 1 33 34 32.7 4.3e-08 1 CL0020
Cotton_A_06370_CDS 302 335 302 335 PF12854.7 PPR_1 Repeat 1 34 34 62.7 1.8e-17 1 CL0020
Cotton_A_06370_CDS 341 385 341 385 PF13041.6 PPR_2 Repeat 1 45 50 49.4 3.7e-13 1 CL0020
Cotton_A_06370_CDS 416 460 416 460 PF13041.6 PPR_2 Repeat 6 50 50 42.9 4.1e-11 1 CL0020
Cotton_A_06128_CDS 96 535 92 535 PF00854.21 PTR2 Family 5 395 395 355.5 3.3e-106 1 CL0015
Cotton_A_30035_CDS 5 114 1 116 PF07732.15 Cu-oxidase_3 Domain 6 117 119 124.2 2.7e-36 1 CL0026
Cotton_A_30035_CDS 127 258 126 274 PF00394.22 Cu-oxidase Domain 2 139 159 132.3 1.7e-38 1 CL0026
Cotton_A_13038_CDS 13 291 11 291 PF00069.25 Pkinase Domain 3 264 264 241.8 7.7e-72 1 CL0016
Cotton_A_00977_CDS 7 108 6 110 PF00466.20 Ribosomal_L10 Family 2 98 100 56.5 2.4e-15 1 No_clan
Cotton_A_00977_CDS 114 183 114 183 PF17777.1 RL10P_insert Domain 1 71 71 72.6 1.9e-20 1 No_clan
Cotton_A_00977_CDS 234 320 234 320 PF00428.19 Ribosomal_60s Family 1 88 88 76.8 1.5e-21 1 No_clan
Cotton_A_36345_CDS 33 108 33 108 PF05922.16 Inhibitor_I9 Domain 1 82 82 61.8 7.6e-17 1 CL0570
Cotton_A_36345_CDS 132 583 131 593 PF00082.22 Peptidase_S8 Domain 2 288 298 166.2 1e-48 1 No_clan
Cotton_A_36345_CDS 383 458 367 458 PF02225.22 PA Family 20 89 89 41.7 8.7e-11 1 CL0364
Cotton_A_36345_CDS 658 758 658 758 PF17766.1 fn3_6 Domain 1 99 99 95.6 1.6e-27 1 CL0159
Cotton_A_24539_CDS 81 156 77 156 PF03951.19 Gln-synt_N Domain 6 83 83 38.6 6.5e-10 1 No_clan
Cotton_A_24539_CDS 182 406 163 412 PF00120.24 Gln-synt_C Domain 21 257 345 57.3 1.3e-15 1 CL0286
Cotton_A_01123_CDS 86 134 85 135 PF13041.6 PPR_2 Repeat 2 49 50 35.0 1.2e-08 1 CL0020
Cotton_A_01123_CDS 200 247 198 247 PF13041.6 PPR_2 Repeat 3 50 50 34.4 1.8e-08 1 CL0020
Cotton_A_01123_CDS 272 305 266 308 PF13812.6 PPR_3 Repeat 10 43 63 20.3 0.00045 1 CL0020
Cotton_A_40893_CDS 29 111 28 111 PF00626.22 Gelsolin Domain 2 76 76 55.9 2.9e-15 1 CL0092
Cotton_A_40893_CDS 150 217 148 221 PF00626.22 Gelsolin Domain 3 70 76 43.3 2.5e-11 1 CL0092
Cotton_A_40893_CDS 298 393 293 394 PF00626.22 Gelsolin Domain 7 75 76 38.0 1.1e-09 1 CL0092
Cotton_A_40893_CDS 461 540 457 540 PF00626.22 Gelsolin Domain 5 76 76 36.8 2.8e-09 1 CL0092
Cotton_A_40893_CDS 590 656 587 657 PF00626.22 Gelsolin Domain 4 75 76 21.7 0.00014 1 CL0092
Cotton_A_40893_CDS 691 769 690 770 PF00626.22 Gelsolin Domain 2 75 76 26.7 3.9e-06 1 CL0092
Cotton_A_17625_CDS 72 163 71 179 PF03168.13 LEA_2 Domain 2 92 101 28.6 1.5e-06 1 CL0159
Cotton_A_09687_CDS 5 104 4 108 PF03650.13 MPC Family 2 101 110 127.7 2e-37 1 CL0141
Cotton_A_21380_CDS 3 74 3 74 PF00240.23 ubiquitin Domain 1 72 72 113.7 2.3e-33 1 CL0072
Cotton_A_21380_CDS 79 150 79 150 PF00240.23 ubiquitin Domain 1 72 72 113.7 2.3e-33 1 CL0072
Cotton_A_21380_CDS 155 226 155 226 PF00240.23 ubiquitin Domain 1 72 72 113.7 2.3e-33 1 CL0072
Cotton_A_21380_CDS 231 302 231 302 PF00240.23 ubiquitin Domain 1 72 72 113.7 2.3e-33 1 CL0072
Cotton_A_21380_CDS 307 378 307 378 PF00240.23 ubiquitin Domain 1 72 72 113.7 2.3e-33 1 CL0072
Cotton_A_21380_CDS 383 454 383 454 PF00240.23 ubiquitin Domain 1 72 72 113.7 2.3e-33 1 CL0072
Cotton_A_27461_CDS 14 62 11 77 PF00996.18 GDI Family 4 52 436 31.8 5.5e-08 1 CL0063
Cotton_A_27461_CDS 113 318 96 352 PF00996.18 GDI Family 67 262 436 90.8 6.6e-26 1 CL0063
Cotton_A_04733_CDS 1 458 1 458 PF00083.24 Sugar_tr Family 7 452 452 445.4 2.2e-133 1 CL0015
Cotton_A_35081_CDS 28 71 27 71 PF08263.12 LRRNT_2 Family 2 41 41 35.4 9.6e-09 1 No_clan
Cotton_A_35081_CDS 98 155 97 157 PF13855.6 LRR_8 Repeat 2 58 61 27.5 1.9e-06 1 CL0022
Cotton_A_35081_CDS 314 374 313 374 PF13855.6 LRR_8 Repeat 2 61 61 28.4 1e-06 1 CL0022
Cotton_A_35081_CDS 480 493 477 494 PF13516.6 LRR_6 Repeat 4 17 24 9.9 0.84 1 CL0022
Cotton_A_35081_CDS 554 567 551 568 PF13516.6 LRR_6 Repeat 4 17 24 9.9 0.84 1 CL0022
Cotton_A_35081_CDS 730 789 728 789 PF13855.6 LRR_8 Repeat 3 61 61 28.0 1.3e-06 1 CL0022
Cotton_A_35081_CDS 918 940 918 940 PF00560.33 LRR_1 Repeat 1 23 23 9.4 1.8 1 CL0022
Cotton_A_35081_CDS 943 962 942 964 PF00560.33 LRR_1 Repeat 2 21 23 9.7 1.5 1 CL0022
Cotton_A_24915_CDS 46 85 44 89 PF00646.33 F-box Domain 3 42 48 25.1 1.1e-05 1 CL0271
Cotton_A_24915_CDS 136 181 134 182 PF01344.25 Kelch_1 Repeat 4 45 46 28.5 8.3e-07 1 CL0186
Cotton_A_24915_CDS 184 229 184 230 PF01344.25 Kelch_1 Repeat 1 45 46 48.8 3.9e-13 1 CL0186
Cotton_A_24915_CDS 236 276 232 277 PF01344.25 Kelch_1 Repeat 5 43 46 27.2 2.1e-06 1 CL0186
Cotton_A_17264_CDS 10 57 10 57 PF00319.18 SRF-TF Domain 1 48 48 91.0 2.4e-26 1 No_clan
Cotton_A_08229_CDS 45 376 41 379 PF11744.8 ALMT Family 5 341 469 396.6 1.6e-118 1 CL0307
Cotton_A_37898_CDS 258 418 257 418 PF03031.18 NIF Family 2 156 156 182.6 3.9e-54 1 CL0137
Cotton_A_05115_CDS 7 37 3 37 PF00400.32 WD40 Repeat 8 37 38 12.4 0.23 1 CL0186
Cotton_A_05115_CDS 43 80 42 80 PF00400.32 WD40 Repeat 2 38 38 33.9 3.7e-08 1 CL0186
Cotton_A_05115_CDS 188 219 179 219 PF00400.32 WD40 Repeat 8 38 38 20.3 0.00071 1 CL0186
Cotton_A_05115_CDS 283 314 278 316 PF00400.32 WD40 Repeat 6 36 38 26.6 7.5e-06 1 CL0186
Cotton_A_00136_CDS 114 381 114 385 PF00656.22 Peptidase_C14 Domain 1 243 248 184.0 4.7e-54 1 CL0093
Cotton_A_35369_CDS 38 212 38 213 PF00350.23 Dynamin_N Domain 1 167 168 186.6 3.4e-55 1 CL0023
Cotton_A_35369_CDS 223 490 222 499 PF01031.20 Dynamin_M Family 2 275 285 201.6 1.4e-59 1 No_clan
Cotton_A_35369_CDS 520 610 518 610 PF02212.18 GED Family 4 92 92 80.5 7.6e-23 1 No_clan
Cotton_A_22196_CDS 127 192 125 192 PF00462.24 Glutaredoxin Domain 3 60 60 43.2 3.4e-11 1 CL0172
Cotton_A_04206_CDS 21 147 17 147 PF00583.25 Acetyltransf_1 Family 5 117 117 55.6 5.6e-15 1 CL0257
Cotton_A_12076_CDS 33 362 33 365 PF12819.7 Malectin_like Domain 1 333 336 250.4 2.7e-74 1 CL0202
Cotton_A_12076_CDS 605 811 604 875 PF07714.17 Pkinase_Tyr Domain 3 206 259 153.3 7.4e-45 1 CL0016
Cotton_A_32554_CDS 613 829 612 830 PF00326.21 Peptidase_S9 Domain 2 209 212 122.0 2.3e-35 1 CL0028
Cotton_A_07487_CDS 44 392 43 392 PF00180.20 Iso_dh Domain 2 348 348 456.7 5.1e-137 1 CL0270
Cotton_A_15936_CDS 3 226 3 231 PF01370.21 Epimerase Family 1 232 241 137.1 6.5e-40 1 CL0063
Cotton_A_39152_CDS 46 84 44 84 PF08263.12 LRRNT_2 Family 3 41 41 42.0 8.2e-11 1 No_clan
Cotton_A_39152_CDS 384 444 384 444 PF13855.6 LRR_8 Repeat 1 61 61 32.8 4.2e-08 1 CL0022
Cotton_A_39152_CDS 677 895 675 970 PF00069.25 Pkinase Domain 3 198 264 128.6 2.7e-37 1 CL0016
Cotton_A_35363_CDS 33 381 33 381 PF00282.19 Pyridoxal_deC Domain 1 375 375 370.4 7.7e-111 1 CL0061
Cotton_A_20227_CDS 198 224 196 225 PF01535.20 PPR Family 4 30 31 11.4 0.3 1 CL0020
Cotton_A_20227_CDS 264 310 264 311 PF13041.6 PPR_2 Repeat 3 49 50 56.7 2e-15 1 CL0020
Cotton_A_20227_CDS 332 381 332 381 PF13041.6 PPR_2 Repeat 1 50 50 68.5 4e-19 1 CL0020
Cotton_A_20227_CDS 399 430 398 431 PF12854.7 PPR_1 Repeat 2 33 34 39.1 4.4e-10 1 CL0020
Cotton_A_20227_CDS 438 484 437 485 PF13041.6 PPR_2 Repeat 2 48 50 47.6 1.4e-12 1 CL0020
Cotton_A_20227_CDS 543 591 542 591 PF13041.6 PPR_2 Repeat 2 50 50 47.0 2.1e-12 1 CL0020
Cotton_A_20227_CDS 612 658 612 658 PF13041.6 PPR_2 Repeat 1 47 50 41.9 8.7e-11 1 CL0020
Cotton_A_20227_CDS 678 710 678 711 PF12854.7 PPR_1 Repeat 1 33 34 35.3 6.6e-09 1 CL0020
Cotton_A_28456_CDS 29 260 29 285 PF00759.19 Glyco_hydro_9 Domain 1 230 411 258.9 1.1e-76 1 CL0059
Cotton_A_28456_CDS 286 396 263 396 PF00759.19 Glyco_hydro_9 Domain 323 411 411 109.3 3e-31 1 CL0059
Cotton_A_35591_CDS 4 27 3 27 PF13912.6 zf-C2H2_6 Domain 2 25 27 26.4 4.8e-06 1 CL0361
Cotton_A_35591_CDS 241 265 240 265 PF13912.6 zf-C2H2_6 Domain 2 26 27 42.3 4.9e-11 1 CL0361
Cotton_A_35591_CDS 297 319 296 320 PF13912.6 zf-C2H2_6 Domain 2 24 27 39.7 3.4e-10 1 CL0361
Cotton_A_33958_CDS 185 210 183 211 PF01535.20 PPR Family 5 30 31 11.8 0.24 1 CL0020
Cotton_A_33958_CDS 387 435 387 435 PF13041.6 PPR_2 Repeat 1 49 50 34.3 2e-08 1 CL0020
Cotton_A_33958_CDS 535 559 531 560 PF01535.20 PPR Family 6 30 31 16.3 0.0081 1 CL0020
Cotton_A_33958_CDS 601 630 600 630 PF01535.20 PPR Family 2 31 31 14.8 0.024 1 CL0020
Cotton_A_33958_CDS 671 699 669 699 PF01535.20 PPR Family 3 31 31 16.3 0.0082 1 CL0020
Cotton_A_33958_CDS 805 851 804 852 PF13041.6 PPR_2 Repeat 2 49 50 36.3 4.6e-09 1 CL0020
Cotton_A_25511_CDS 1 127 1 128 PF11221.8 Med21 Family 1 143 144 97.4 8.8e-28 1 No_clan
Cotton_A_21940_CDS 46 65 45 66 PF18414.1 zf_C2H2_10 Domain 2 21 26 25.7 6.1e-06 1 CL0361
Cotton_A_04333_CDS 80 334 80 334 PF00069.25 Pkinase Domain 1 264 264 257.4 1.3e-76 1 CL0016
Cotton_A_04333_CDS 361 419 361 419 PF03822.14 NAF Domain 1 54 54 83.7 7.5e-24 1 CL0573
Cotton_A_06472_CDS 68 275 6 277 PF01086.17 Clathrin_lg_ch Family 93 228 230 52.7 5.7e-14 1 No_clan
Cotton_A_03604_CDS 70 120 69 121 PF00847.20 AP2 Domain 2 53 54 47.7 1.3e-12 1 CL0081
Cotton_A_20519_CDS 68 123 68 124 PF01849.18 NAC Family 1 56 57 80.6 5.9e-23 1 No_clan
Cotton_A_14481_CDS 51 108 51 108 PF08246.12 Inhibitor_I29 Domain 1 58 58 65.9 3.3e-18 1 No_clan
Cotton_A_14481_CDS 137 353 137 353 PF00112.23 Peptidase_C1 Domain 1 218 218 291.3 6.2e-87 1 CL0125
Cotton_A_14481_CDS 387 434 387 434 PF00396.18 Granulin Family 1 42 42 39.4 5.6e-10 1 No_clan
Cotton_A_31023_CDS 179 295 179 295 PF02770.19 Acyl-CoA_dh_M Domain 1 97 97 56.7 2e-15 1 No_clan
Cotton_A_03481_CDS 32 107 30 108 PF14144.6 DOG1 Family 3 76 77 76.0 1.9e-21 1 No_clan
Cotton_A_17348_CDS 34 79 34 82 PF14392.6 zf-CCHC_4 Domain 1 46 49 60.8 7.3e-17 1 CL0511
Cotton_A_32910_CDS 55 361 55 362 PF01301.19 Glyco_hydro_35 Domain 1 315 316 367.8 5.8e-110 1 CL0058
Cotton_A_32910_CDS 369 441 369 441 PF17834.1 GHD Domain 1 72 72 81.4 3.5e-23 1 CL0369
Cotton_A_32910_CDS 763 842 763 842 PF02140.18 Gal_Lectin Domain 1 80 80 55.2 7.1e-15 1 No_clan
Cotton_A_06353_CDS 12 131 3 133 PF04699.14 P16-Arc Domain 24 145 148 76.2 3.6e-21 1 No_clan
Cotton_A_13488_CDS 13 54 6 54 PF05922.16 Inhibitor_I9 Domain 41 82 82 44.4 2e-11 1 CL0570
Cotton_A_28949_CDS 17 295 17 296 PF01267.17 F-actin_cap_A Family 1 265 266 246.1 4.2e-73 1 No_clan
Cotton_A_18107_CDS 144 270 142 316 PF13506.6 Glyco_transf_21 Domain 3 124 173 38.3 9e-10 1 CL0110
Cotton_A_00018_CDS 159 318 149 352 PF01852.19 START Domain 15 170 209 34.0 1.9e-08 1 CL0209
Cotton_A_04260_CDS 12 116 11 117 PF00169.29 PH Domain 2 103 105 33.1 6.1e-08 1 CL0266
Cotton_A_04260_CDS 200 336 187 362 PF01852.19 START Domain 43 178 209 72.2 3.7e-20 1 CL0209
Cotton_A_04260_CDS 520 727 520 727 PF07059.12 DUF1336 Family 1 229 229 222.5 7.5e-66 1 No_clan
Cotton_A_06321_CDS 58 152 58 153 PF06749.12 DUF1218 Family 1 90 91 98.8 2e-28 1 No_clan
Cotton_A_39947_CDS 147 409 147 409 PF00069.25 Pkinase Domain 1 264 264 231.0 1.5e-68 1 CL0016
Cotton_A_17103_CDS 128 296 128 296 PF14543.6 TAXi_N Domain 1 178 178 179.6 6.7e-53 1 CL0129
Cotton_A_17103_CDS 321 468 321 469 PF14541.6 TAXi_C Domain 1 160 161 100.5 8.2e-29 1 CL0129
Cotton_A_22054_CDS 104 282 102 283 PF00574.23 CLP_protease Domain 3 181 182 266.6 1.1e-79 1 CL0127
Cotton_A_11440_CDS 10 128 9 128 PF00903.25 Glyoxalase Domain 2 128 128 36.9 3.6e-09 1 CL0104
Cotton_A_08772_CDS 170 254 135 258 PF00297.22 Ribosomal_L3 Family 208 289 369 67.1 1.3e-18 1 CL0575
Cotton_A_13722_CDS 162 187 159 188 PF01535.20 PPR Family 5 30 31 10.9 0.44 1 CL0020
Cotton_A_13722_CDS 222 254 221 254 PF12854.7 PPR_1 Repeat 2 34 34 40.4 1.7e-10 1 CL0020
Cotton_A_13722_CDS 261 309 260 309 PF13041.6 PPR_2 Repeat 2 50 50 54.4 1e-14 1 CL0020
Cotton_A_13722_CDS 330 358 328 359 PF12854.7 PPR_1 Repeat 5 33 34 25.0 1.1e-05 1 CL0020
Cotton_A_13722_CDS 361 393 361 394 PF12854.7 PPR_1 Repeat 1 33 34 30.3 2.5e-07 1 CL0020
Cotton_A_13722_CDS 400 448 400 449 PF13041.6 PPR_2 Repeat 1 49 50 67.1 1.1e-18 1 CL0020
Cotton_A_13722_CDS 505 554 505 554 PF13041.6 PPR_2 Repeat 1 50 50 56.0 3.2e-15 1 CL0020
Cotton_A_13722_CDS 575 623 575 624 PF13041.6 PPR_2 Repeat 1 49 50 38.5 9.5e-10 1 CL0020
Cotton_A_13722_CDS 714 761 714 763 PF13041.6 PPR_2 Repeat 1 48 50 51.2 1.1e-13 1 CL0020
Cotton_A_13722_CDS 784 832 784 833 PF13041.6 PPR_2 Repeat 1 49 50 58.6 5.1e-16 1 CL0020
Cotton_A_39063_CDS 10 56 3 88 PF05021.15 NPL4 Family 220 269 308 22.7 5.2e-05 1 CL0366
Cotton_A_02047_CDS 106 317 105 317 PF01823.19 MACPF Domain 2 209 209 123.0 1.8e-35 1 CL0293
Cotton_A_22138_CDS 40 432 40 434 PF01490.18 Aa_trans Family 1 407 409 265.6 6.3e-79 1 CL0062
Cotton_A_30765_CDS 2 46 1 46 PF01154.17 HMG_CoA_synt_N Domain 2 46 174 53.5 2.5e-14 1 CL0046
Cotton_A_06311_CDS 350 411 350 412 PF08590.10 DUF1771 Domain 1 62 64 54.4 1.2e-14 1 No_clan
Cotton_A_28266_CDS 48 284 43 289 PF04142.15 Nuc_sug_transp Family 6 255 315 119.6 1.5e-34 1 CL0184
Cotton_A_37736_CDS 1 241 1 241 PF07250.11 Glyoxal_oxid_N Family 1 240 240 382.0 8.6e-115 1 No_clan
Cotton_A_09798_CDS 41 421 40 421 PF00155.21 Aminotran_1_2 Domain 2 363 363 338.7 4.2e-101 1 CL0061
Cotton_A_30252_CDS 38 169 38 169 PF13326.6 PSII_Pbs27 Family 1 141 141 118.7 2.3e-34 1 No_clan
Cotton_A_28618_CDS 23 185 22 185 PF04862.12 DUF642 Domain 2 157 157 141.9 1.4e-41 1 CL0202
Cotton_A_28618_CDS 196 358 196 360 PF04862.12 DUF642 Domain 1 155 157 58.4 7.2e-16 1 CL0202
Cotton_A_26997_CDS 100 150 99 151 PF00847.20 AP2 Domain 2 53 54 48.3 8.8e-13 1 CL0081
Cotton_A_11142_CDS 26 392 20 393 PF03348.15 Serinc Family 16 428 429 223.9 3.5e-66 1 No_clan
Cotton_A_40753_CDS 44 286 43 286 PF00141.23 peroxidase Domain 2 229 229 253.3 2.1e-75 1 CL0617
Cotton_A_02857_CDS 47 179 43 179 PF00790.19 VHS Domain 6 141 141 93.3 1.2e-26 1 CL0009
Cotton_A_36565_CDS 92 690 92 690 PF00888.22 Cullin Family 1 618 618 688.1 1.2e-206 1 No_clan
Cotton_A_36565_CDS 721 781 721 781 PF10557.9 Cullin_Nedd8 Domain 1 63 63 81.3 3.8e-23 1 CL0123
Cotton_A_11352_CDS 29 75 29 75 PF00097.25 zf-C3HC4 Domain 1 41 41 32.0 8.5e-08 1 CL0229
Cotton_A_37400_CDS 99 392 99 404 PF03552.14 Cellulose_synt Family 1 298 722 289.8 4.9e-86 1 CL0110
Cotton_A_37400_CDS 404 727 393 730 PF03552.14 Cellulose_synt Family 388 703 722 163.1 1.1e-47 1 CL0110
Cotton_A_09537_CDS 60 137 60 137 PF04640.14 PLATZ Family 1 82 82 103.4 7.6e-30 1 No_clan
Cotton_A_01212_CDS 45 308 45 310 PF07714.17 Pkinase_Tyr Domain 1 257 259 96.0 2.1e-27 1 CL0016
Cotton_A_14044_CDS 15 55 15 55 PF00249.31 Myb_DNA-binding Domain 1 39 46 54.7 8.2e-15 1 CL0123
Cotton_A_23619_CDS 8 97 8 98 PF13850.6 ERGIC_N Domain 1 90 91 105.2 1.7e-30 1 No_clan
Cotton_A_23619_CDS 149 366 149 366 PF07970.12 COPIIcoated_ERV Family 1 221 221 296.4 1.5e-88 1 No_clan
Cotton_A_08790_CDS 167 497 167 497 PF10250.9 O-FucT Family 1 336 336 245.0 1.7e-72 1 CL0113
Cotton_A_34633_CDS 1 59 1 60 PF01780.19 Ribosomal_L37ae Family 26 84 85 76.0 1.8e-21 1 CL0167
Cotton_A_31712_CDS 19 227 19 228 PF01728.19 FtsJ Family 1 176 177 148.3 2.4e-43 1 CL0063
Cotton_A_06554_CDS 14 309 1 321 PF00067.22 p450 Domain 157 451 463 241.5 1.6e-71 1 No_clan
Cotton_A_01701_CDS 22 143 21 144 PF00241.20 Cofilin_ADF Domain 2 120 121 135.5 7.7e-40 1 CL0092
Cotton_A_04330_CDS 271 341 271 343 PF04564.15 U-box Domain 1 71 73 71.4 5.2e-20 1 CL0229
Cotton_A_01822_CDS 98 197 90 199 PF02341.15 RcbX Family 11 109 111 69.8 2.1e-19 1 No_clan
Cotton_A_06416_CDS 36 126 34 135 PF00069.25 Pkinase Domain 3 95 264 54.1 1.4e-14 1 CL0016
Cotton_A_10791_CDS 33 273 33 276 PF12697.7 Abhydrolase_6 Domain 1 217 220 70.9 2.3e-19 1 CL0028
Cotton_A_33281_CDS 41 134 15 140 PF00179.26 UQ_con Domain 24 115 140 57.8 9.1e-16 1 CL0208
Cotton_A_41178_CDS 16 115 13 221 PF13460.6 NAD_binding_10 Domain 5 103 184 32.6 6.6e-08 1 CL0063
Cotton_A_39256_CDS 187 245 186 246 PF00847.20 AP2 Domain 2 53 54 43.7 2.3e-11 1 CL0081
Cotton_A_39256_CDS 289 339 288 340 PF00847.20 AP2 Domain 2 53 54 38.0 1.5e-09 1 CL0081
Cotton_A_17834_CDS 93 327 93 350 PF01370.21 Epimerase Family 1 228 241 166.0 9.9e-49 1 CL0063
Cotton_A_23260_CDS 28 139 26 139 PF04398.12 DUF538 Family 3 112 112 118.1 2.4e-34 1 No_clan
Cotton_A_29514_CDS 142 426 142 426 PF00069.25 Pkinase Domain 1 264 264 208.5 1.1e-61 1 CL0016
Cotton_A_20922_CDS 181 204 179 205 PF01535.20 PPR Family 4 27 31 16.9 0.0055 1 CL0020
Cotton_A_20922_CDS 260 280 258 283 PF01535.20 PPR Family 5 25 31 9.7 1 1 CL0020
Cotton_A_20922_CDS 292 337 289 337 PF13041.6 PPR_2 Repeat 5 50 50 38.1 1.3e-09 1 CL0020
Cotton_A_20922_CDS 362 393 361 393 PF12854.7 PPR_1 Repeat 3 34 34 29.3 5.1e-07 1 CL0020
Cotton_A_20922_CDS 400 449 400 449 PF13041.6 PPR_2 Repeat 1 50 50 65.9 2.7e-18 1 CL0020
Cotton_A_20922_CDS 475 520 473 520 PF13041.6 PPR_2 Repeat 5 50 50 43.8 2.2e-11 1 CL0020
Cotton_A_20922_CDS 541 585 541 585 PF13041.6 PPR_2 Repeat 1 45 50 58.5 5.5e-16 1 CL0020
Cotton_A_20922_CDS 608 640 607 640 PF12854.7 PPR_1 Repeat 2 34 34 40.6 1.4e-10 1 CL0020
Cotton_A_20922_CDS 647 694 647 696 PF13041.6 PPR_2 Repeat 1 48 50 65.7 3.2e-18 1 CL0020
Cotton_A_24300_CDS 103 230 103 232 PF00026.23 Asp Family 1 127 315 175.8 1.4e-51 1 CL0129
Cotton_A_24300_CDS 233 508 230 508 PF00026.23 Asp Family 148 315 315 191.1 3.1e-56 1 CL0129
Cotton_A_24300_CDS 319 351 318 351 PF03489.17 SapB_2 Family 2 34 34 54.4 9.4e-15 1 No_clan
Cotton_A_24300_CDS 382 418 381 418 PF05184.15 SapB_1 Domain 2 38 38 37.6 1.6e-09 1 No_clan
Cotton_A_22116_CDS 69 117 69 118 PF13041.6 PPR_2 Repeat 1 49 50 55.5 4.9e-15 1 CL0020
Cotton_A_22116_CDS 139 188 139 188 PF13041.6 PPR_2 Repeat 1 50 50 54.2 1.2e-14 1 CL0020
Cotton_A_22116_CDS 217 257 216 258 PF13041.6 PPR_2 Repeat 9 49 50 32.3 8.1e-08 1 CL0020
Cotton_A_40952_CDS 7 282 7 282 PF03643.15 Vps26 Family 1 275 275 413.3 3.4e-124 1 CL0135
Cotton_A_08864_CDS 57 133 56 133 PF03330.18 DPBB_1 Domain 2 83 83 49.6 3.6e-13 1 CL0199
Cotton_A_08864_CDS 146 228 145 228 PF01357.21 Pollen_allerg_1 Domain 2 80 80 75.2 3e-21 1 CL0159
Cotton_A_35206_CDS 136 179 134 205 PF13740.6 ACT_6 Domain 6 49 76 24.8 1.5e-05 1 CL0070
Cotton_A_34124_CDS 4 95 4 96 PF03759.13 PRONE Family 1 92 363 143.1 9.7e-42 1 No_clan
Cotton_A_34124_CDS 96 169 92 170 PF03759.13 PRONE Family 289 362 363 112.6 1.8e-32 1 No_clan
Cotton_A_13707_CDS 1 46 1 59 PF00067.22 p450 Domain 403 449 463 32.6 3.7e-08 1 No_clan
Cotton_A_10995_CDS 15 190 15 194 PF01582.20 TIR Family 1 172 176 162.0 1.2e-47 1 CL0173
Cotton_A_10995_CDS 209 419 196 431 PF00931.22 NB-ARC Domain 15 230 252 99.9 1.3e-28 1 CL0023
Cotton_A_17881_CDS 390 659 386 659 PF07714.17 Pkinase_Tyr Domain 5 259 259 156.6 7.1e-46 1 CL0016
Cotton_A_12411_CDS 176 319 176 322 PF00620.27 RhoGAP Domain 1 146 152 98.3 3.7e-28 1 CL0409
Cotton_A_12411_CDS 527 605 523 605 PF14389.6 Lzipper-MIP1 Family 5 84 84 57.8 9.9e-16 1 No_clan
Cotton_A_27722_CDS 355 477 349 477 PF12600.8 DUF3769 Family 336 444 445 22.6 4.4e-05 1 No_clan
Cotton_A_03575_CDS 72 358 71 359 PF01095.19 Pectinesterase Family 2 297 298 223.3 2.8e-66 1 CL0268
Cotton_A_03004_CDS 31 79 31 98 PF00786.28 PBD Domain 1 38 59 36.7 4e-09 1 No_clan
Cotton_A_16647_CDS 87 147 87 155 PF00076.22 RRM_1 Domain 1 60 70 41.0 1.3e-10 1 CL0221
Cotton_A_16647_CDS 180 249 180 251 PF00076.22 RRM_1 Domain 1 68 70 55.7 3.1e-15 1 CL0221
Cotton_A_16647_CDS 291 355 291 355 PF00076.22 RRM_1 Domain 1 70 70 67.9 4.8e-19 1 CL0221
Cotton_A_05298_CDS 1 62 1 62 PF00504.21 Chloroa_b-bind Family 91 158 161 54.1 2.5e-14 1 No_clan
Cotton_A_23280_CDS 27 135 27 135 PF04398.12 DUF538 Family 1 112 112 101.3 4e-29 1 No_clan
Cotton_A_20933_CDS 253 386 251 388 PF00924.18 MS_channel Family 68 202 206 35.1 9.5e-09 1 No_clan
Cotton_A_05594_CDS 1 132 1 133 PF00235.19 Profilin Domain 1 126 127 152.9 5e-45 1 CL0431
Cotton_A_01225_CDS 20 306 16 306 PF03151.16 TPT Family 5 290 290 84.7 6.9e-24 1 CL0184
Cotton_A_06323_CDS 62 212 62 212 PF00005.27 ABC_tran Domain 1 137 137 89.2 3.3e-25 1 CL0023
Cotton_A_06323_CDS 357 563 357 563 PF01061.24 ABC2_membrane Family 1 210 210 135.4 1.7e-39 1 CL0181
Cotton_A_25260_CDS 41 443 39 450 PF01490.18 Aa_trans Family 3 402 409 199.9 5.4e-59 1 CL0062
Cotton_A_16581_CDS 35 358 35 358 PF16913.5 PUNUT Family 1 322 322 427.8 2.6e-128 1 CL0184
Cotton_A_17597_CDS 8 259 7 262 PF02900.18 LigB Domain 2 269 273 194.3 2e-57 1 CL0283
Cotton_A_34164_CDS 42 253 41 253 PF00230.20 MIP Family 4 227 227 209.8 4.2e-62 1 No_clan
Cotton_A_02591_CDS 62 184 61 186 PF10374.9 EST1 Family 2 134 136 65.1 9.8e-18 1 CL0020
Cotton_A_02591_CDS 198 533 198 534 PF10373.9 EST1_DNA_bind Family 1 281 282 220.2 3.8e-65 1 CL0020
Cotton_A_11774_CDS 44 362 43 362 PF00332.18 Glyco_hydro_17 Domain 2 313 313 295.6 5.3e-88 1 CL0058
Cotton_A_14566_CDS 341 742 337 743 PF02181.23 FH2 Family 6 371 372 365.6 2.9e-109 1 No_clan
Cotton_A_16884_CDS 8 255 6 255 PF00335.20 Tetraspanin Family 3 229 229 122.7 1.8e-35 1 CL0347
Cotton_A_26991_CDS 28 105 28 113 PF00234.22 Tryp_alpha_amyl Family 1 84 87 23.0 8.1e-05 1 CL0482
Cotton_A_33798_CDS 195 342 193 342 PF00588.19 SpoU_methylase Family 3 142 142 104.4 5.4e-30 1 CL0098
Cotton_A_27330_CDS 70 198 70 200 PF01467.26 CTP_transf_like Domain 1 141 143 87.5 9.5e-25 1 CL0039
Cotton_A_27330_CDS 261 352 261 413 PF01467.26 CTP_transf_like Domain 1 92 143 52.4 6.1e-14 1 CL0039
Cotton_A_37980_CDS 8 168 8 169 PF00071.22 Ras Domain 1 161 162 206.6 1.7e-61 1 CL0023
Cotton_A_13760_CDS 17 190 17 191 PF01595.20 DUF21 Domain 1 175 176 121.2 3.6e-35 1 No_clan
Cotton_A_13711_CDS 45 238 40 240 PF00067.22 p450 Domain 4 189 463 76.4 1.9e-21 1 No_clan
Cotton_A_01860_CDS 153 177 152 178 PF01535.20 PPR Family 6 30 31 18.2 0.0021 1 CL0020
Cotton_A_01860_CDS 180 228 180 229 PF13041.6 PPR_2 Repeat 1 49 50 52.6 3.8e-14 1 CL0020
Cotton_A_01860_CDS 243 284 240 286 PF13812.6 PPR_3 Repeat 4 45 63 25.2 1.3e-05 1 CL0020
Cotton_A_26603_CDS 31 93 31 93 PF00462.24 Glutaredoxin Domain 1 60 60 71.2 6.1e-20 1 CL0172
Cotton_A_33072_CDS 125 548 125 548 PF01373.17 Glyco_hydro_14 Domain 1 402 402 453.3 7.2e-136 1 CL0058
Cotton_A_38684_CDS 26 62 25 63 PF08263.12 LRRNT_2 Family 2 40 41 35.9 6.6e-09 1 No_clan
Cotton_A_38684_CDS 234 251 234 256 PF00560.33 LRR_1 Repeat 1 18 23 9.9 1.3 1 CL0022
Cotton_A_38684_CDS 518 577 518 577 PF13855.6 LRR_8 Repeat 1 61 61 31.4 1.2e-07 1 CL0022
Cotton_A_38684_CDS 685 960 683 962 PF00069.25 Pkinase Domain 3 260 264 165.7 1.3e-48 1 CL0016
Cotton_A_12726_CDS 35 68 35 82 PF10354.9 DUF2431 Domain 1 33 168 27.8 2.7e-06 1 CL0063
Cotton_A_12726_CDS 86 159 82 159 PF10354.9 DUF2431 Domain 94 168 168 57.3 2.2e-15 1 CL0063
Cotton_A_03653_CDS 213 268 210 269 PF07647.17 SAM_2 Domain 9 65 66 52.1 5.1e-14 1 CL0003
Cotton_A_23316_CDS 2 78 1 78 PF02705.16 K_trans Family 460 534 534 43.8 1.2e-11 1 CL0062
Cotton_A_12395_CDS 62 545 61 546 PF00982.21 Glyco_transf_20 Family 2 473 474 601.9 7.8e-181 1 CL0113
Cotton_A_12395_CDS 595 829 595 830 PF02358.16 Trehalose_PPase Family 1 232 233 248.0 6.6e-74 1 CL0137
Cotton_A_17145_CDS 9 99 9 139 PF18052.1 Rx_N Domain 1 91 93 97.8 3.2e-28 1 No_clan
Cotton_A_17145_CDS 172 398 171 416 PF00931.22 NB-ARC Domain 2 220 252 157.8 2.7e-46 1 CL0023
Cotton_A_11422_CDS 49 112 48 113 PF00035.26 dsrm Domain 2 65 67 42.7 6.7e-11 1 CL0196
Cotton_A_11422_CDS 134 197 133 197 PF00035.26 dsrm Domain 2 67 67 48.0 1.5e-12 1 CL0196
Cotton_A_14936_CDS 59 503 59 503 PF00083.24 Sugar_tr Family 1 452 452 370.9 9.1e-111 1 CL0015
Cotton_A_12413_CDS 74 241 74 254 PF03092.16 BT1 Family 1 171 524 182.7 8e-54 1 CL0015
Cotton_A_12413_CDS 260 487 244 490 PF03092.16 BT1 Family 231 520 524 214.0 2.7e-63 1 CL0015
Cotton_A_27582_CDS 57 109 56 110 PF04770.12 ZF-HD_dimer Family 2 54 55 102.4 1.2e-29 1 No_clan
Cotton_A_24796_CDS 150 383 147 384 PF00931.22 NB-ARC Domain 4 251 252 161.0 2.9e-47 1 CL0023
Cotton_A_24796_CDS 524 581 523 582 PF13855.6 LRR_8 Repeat 2 59 61 34.1 1.7e-08 1 CL0022
Cotton_A_38838_CDS 25 70 25 106 PF04431.13 Pec_lyase_N Family 1 46 56 50.9 1.3e-13 1 No_clan
Cotton_A_38838_CDS 170 352 161 353 PF00544.19 Pec_lyase_C Domain 30 210 211 79.4 2.6e-22 1 CL0268
Cotton_A_18656_CDS 142 222 140 237 PF00295.17 Glyco_hydro_28 Domain 4 80 325 32.6 4.2e-08 1 CL0268
Cotton_A_18656_CDS 262 480 251 487 PF00295.17 Glyco_hydro_28 Domain 90 308 325 236.9 2.8e-70 1 CL0268
Cotton_A_35939_CDS 66 214 65 216 PF00190.22 Cupin_1 Domain 2 149 151 157.6 1.7e-46 1 CL0029
Cotton_A_12342_CDS 3 54 1 73 PF09032.11 Siah-Interact_N Domain 4 56 78 29.4 7.4e-07 1 No_clan
Cotton_A_12342_CDS 80 156 79 156 PF04969.16 CS Domain 2 76 76 50.5 3.1e-13 1 CL0190
Cotton_A_25723_CDS 1 89 1 89 PF03477.16 ATP-cone Domain 1 86 86 58.5 7.3e-16 1 No_clan
Cotton_A_25723_CDS 142 212 141 213 PF00317.21 Ribonuc_red_lgN Domain 2 82 83 87.6 4.1e-25 1 No_clan
Cotton_A_25723_CDS 216 757 216 757 PF02867.15 Ribonuc_red_lgC Family 1 524 524 629.2 4.9e-189 1 CL0339
Cotton_A_37376_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 54.2 1.2e-14 1 CL0123
Cotton_A_37376_CDS 67 112 67 112 PF00249.31 Myb_DNA-binding Domain 1 46 46 50.9 1.3e-13 1 CL0123
Cotton_A_13721_CDS 194 219 192 232 PF01476.20 LysM Domain 6 31 44 16.3 0.0075 1 CL0187
Cotton_A_13721_CDS 363 606 333 607 PF07714.17 Pkinase_Tyr Domain 30 258 259 117.8 4.7e-34 1 CL0016
Cotton_A_21028_CDS 318 357 313 357 PF01753.18 zf-MYND Domain 4 38 38 32.8 5.4e-08 1 CL0175
Cotton_A_17059_CDS 6 58 4 62 PF07647.17 SAM_2 Domain 12 60 66 21.5 0.00018 1 CL0003
Cotton_A_16123_CDS 212 541 212 542 PF10250.9 O-FucT Family 1 335 336 230.4 4.6e-68 1 CL0113
Cotton_A_30295_CDS 577 707 558 708 PF00078.27 RVT_1 Family 57 221 222 68.8 4.8e-19 1 CL0027
Cotton_A_30295_CDS 749 827 698 827 PF17917.1 RT_RNaseH Domain 27 105 105 58.5 6.8e-16 1 CL0219
Cotton_A_30295_CDS 878 967 873 970 PF13456.6 RVT_3 Domain 31 120 124 47.1 1.9e-12 1 CL0219
Cotton_A_30295_CDS 989 1044 987 1047 PF17921.1 Integrase_H2C2 Domain 3 55 58 30.3 3.2e-07 1 CL0361
Cotton_A_28981_CDS 206 232 205 233 PF00036.32 EF-hand_1 Domain 2 28 29 33.3 1.8e-08 1 CL0220
Cotton_A_22465_CDS 169 389 154 390 PF00931.22 NB-ARC Domain 18 251 252 162.3 1.2e-47 1 CL0023
Cotton_A_04036_CDS 15 78 1 79 PF02519.14 Auxin_inducible Family 20 83 90 72.5 2.4e-20 1 No_clan
Cotton_A_27877_CDS 33 71 31 71 PF08263.12 LRRNT_2 Family 3 41 41 30.1 4.5e-07 1 No_clan
Cotton_A_27877_CDS 674 958 672 960 PF00069.25 Pkinase Domain 3 260 264 156.3 9.3e-46 1 CL0016
Cotton_A_30617_CDS 18 245 16 246 PF00337.22 Gal-bind_lectin Domain 46 133 134 54.6 7.9e-15 1 CL0004
Cotton_A_30617_CDS 289 473 289 476 PF01762.21 Galactosyl_T Family 1 188 195 137.5 4.7e-40 1 CL0110
Cotton_A_37232_CDS 27 253 27 254 PF02485.21 Branch Family 1 246 247 274.4 8.1e-82 1 CL0110
Cotton_A_10762_CDS 106 316 105 317 PF01596.17 Methyltransf_3 Domain 2 211 212 344.6 1.5e-103 1 CL0063
Cotton_A_23129_CDS 21 74 21 95 PF00240.23 ubiquitin Domain 1 53 72 28.3 1.1e-06 1 CL0072
Cotton_A_23129_CDS 153 219 152 219 PF10260.9 SAYSvFN Domain 2 70 70 86.2 1e-24 1 No_clan
Cotton_A_22249_CDS 26 62 25 63 PF08263.12 LRRNT_2 Family 2 40 41 30.1 4.2e-07 1 No_clan
Cotton_A_22249_CDS 210 269 205 269 PF13855.6 LRR_8 Repeat 2 61 61 31.7 9.7e-08 1 CL0022
Cotton_A_22249_CDS 685 961 683 964 PF00069.25 Pkinase Domain 3 258 264 163.7 5.2e-48 1 CL0016
Cotton_A_22402_CDS 134 405 133 407 PF00083.24 Sugar_tr Family 145 450 452 176.6 8.2e-52 1 CL0015
Cotton_A_15562_CDS 47 127 47 139 PF16656.5 Pur_ac_phosph_N Domain 1 83 94 67.0 1.7e-18 1 CL0159
Cotton_A_15562_CDS 142 332 141 332 PF00149.28 Metallophos Domain 2 204 204 80.0 3.2e-22 1 CL0163
Cotton_A_15562_CDS 347 404 347 409 PF14008.6 Metallophos_C Domain 1 58 63 71.7 6.8e-20 1 No_clan
Cotton_A_32390_CDS 117 247 117 248 PF00782.20 DSPc Domain 1 132 133 97.6 4.8e-28 1 CL0031
Cotton_A_04500_CDS 2 48 1 56 PF14632.6 SPT6_acidic Family 23 70 89 26.6 6.7e-06 1 No_clan
Cotton_A_01005_CDS 7 60 7 69 PF05641.12 Agenet Domain 1 52 61 56.4 3e-15 1 CL0049
Cotton_A_12269_CDS 48 85 47 85 PF13923.6 zf-C3HC4_2 Domain 2 40 40 39.9 2.7e-10 1 CL0229
Cotton_A_12269_CDS 452 489 451 490 PF00400.32 WD40 Repeat 2 37 38 18.4 0.003 1 CL0186
Cotton_A_12269_CDS 538 574 537 574 PF00400.32 WD40 Repeat 2 38 38 23.1 9.6e-05 1 CL0186
Cotton_A_34016_CDS 78 275 78 275 PF14543.6 TAXi_N Domain 1 178 178 103.7 1.3e-29 1 CL0129
Cotton_A_34016_CDS 299 464 298 465 PF14541.6 TAXi_C Domain 2 160 161 113.0 1.1e-32 1 CL0129
Cotton_A_09631_CDS 19 84 19 102 PF14226.6 DIOX_N Family 1 70 118 54.7 1.6e-14 1 CL0029
Cotton_A_09631_CDS 170 285 169 287 PF03171.20 2OG-FeII_Oxy Domain 2 99 101 87.5 6.9e-25 1 CL0029
Cotton_A_03909_CDS 39 179 38 180 PF14223.6 Retrotran_gag_2 Family 2 137 138 115.0 2e-33 1 CL0523
Cotton_A_04089_CDS 67 181 65 183 PF01412.18 ArfGap Domain 3 115 117 128.3 1.4e-37 1 No_clan
Cotton_A_04089_CDS 257 287 256 289 PF00168.30 C2 Domain 2 34 103 10.3 0.68 1 CL0154
Cotton_A_04089_CDS 289 313 286 327 PF00168.30 C2 Domain 69 93 103 13.0 0.096 1 CL0154
Cotton_A_17737_CDS 75 122 54 122 PF17284.2 Spermine_synt_N Domain 8 53 53 73.2 1.1e-20 1 No_clan
Cotton_A_17737_CDS 125 310 125 313 PF01564.17 Spermine_synth Domain 1 185 188 217.8 8.1e-65 1 CL0063
Cotton_A_27183_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 54.6 8.8e-15 1 CL0123
Cotton_A_27183_CDS 67 111 67 112 PF00249.31 Myb_DNA-binding Domain 1 45 46 47.5 1.5e-12 1 CL0123
Cotton_A_25979_CDS 3 98 1 100 PF03479.15 DUF296 Domain 19 105 107 68.4 6e-19 1 CL0615
Cotton_A_33387_CDS 29 128 29 128 PF10497.9 zf-4CXXC_R1 Domain 1 99 99 119.1 7.7e-35 1 No_clan
Cotton_A_03779_CDS 197 315 139 319 PF01764.25 Lipase_3 Family 19 137 142 58.9 4.8e-16 1 CL0028
Cotton_A_28887_CDS 31 120 29 123 PF01248.26 Ribosomal_L7Ae Domain 3 92 95 92.0 1.4e-26 1 CL0101
Cotton_A_18537_CDS 230 377 224 377 PF00650.20 CRAL_TRIO Domain 7 159 159 81.5 5.4e-23 1 CL0512
Cotton_A_29975_CDS 25 77 25 77 PF04431.13 Pec_lyase_N Family 1 56 56 64.5 7.9e-18 1 No_clan
Cotton_A_29975_CDS 263 332 257 333 PF00544.19 Pec_lyase_C Domain 140 210 211 27.1 2.7e-06 1 CL0268
Cotton_A_29599_CDS 72 171 72 183 PF14226.6 DIOX_N Family 1 98 118 68.4 9.1e-19 1 CL0029
Cotton_A_39038_CDS 40 531 40 533 PF00118.24 Cpn60_TCP1 Family 1 488 491 523.7 4.1e-157 1 No_clan
Cotton_A_00120_CDS 23 238 22 253 PF00083.24 Sugar_tr Family 2 229 452 176.8 6.9e-52 1 CL0015
Cotton_A_00120_CDS 511 740 496 741 PF00083.24 Sugar_tr Family 232 451 452 145.1 2.8e-42 1 CL0015
Cotton_A_18105_CDS 2 197 1 197 PF00349.21 Hexokinase_1 Domain 24 199 199 199.9 3.9e-59 1 CL0108
Cotton_A_18105_CDS 204 444 203 445 PF03727.16 Hexokinase_2 Domain 2 239 240 277.9 6e-83 1 CL0108
Cotton_A_35686_CDS 84 194 83 199 PF13249.6 SQHop_cyclase_N Domain 2 105 291 40.0 2.4e-10 1 CL0059
Cotton_A_35686_CDS 199 323 194 341 PF13249.6 SQHop_cyclase_N Domain 132 244 291 40.1 2.3e-10 1 CL0059
Cotton_A_18397_CDS 1 25 1 26 PF02042.15 RWP-RK Family 15 39 49 29.4 5.7e-07 1 No_clan
Cotton_A_01425_CDS 86 137 86 137 PF08158.12 NUC130_3NT Domain 1 52 52 53.1 2.9e-14 1 No_clan
Cotton_A_01425_CDS 443 801 443 802 PF05285.12 SDA1 Family 1 347 348 252.2 9.2e-75 1 No_clan
Cotton_A_04091_CDS 9 78 9 78 PF00076.22 RRM_1 Domain 1 70 70 50.3 1.5e-13 1 CL0221
Cotton_A_04091_CDS 160 260 134 268 PF14111.6 DUF4283 Domain 27 134 145 39.9 2.9e-10 1 No_clan
Cotton_A_39839_CDS 168 217 167 218 PF00847.20 AP2 Domain 2 53 54 53.1 2.7e-14 1 CL0081
Cotton_A_39322_CDS 29 256 28 258 PF00194.21 Carb_anhydrase Domain 2 252 254 158.9 1.6e-46 1 No_clan
Cotton_A_39330_CDS 46 156 46 157 PF14226.6 DIOX_N Family 1 117 118 81.6 7.3e-23 1 CL0029
Cotton_A_39330_CDS 206 301 191 302 PF03171.20 2OG-FeII_Oxy Domain 5 100 101 84.8 4.8e-24 1 CL0029
Cotton_A_01338_CDS 71 231 71 231 PF01554.18 MatE Family 1 161 161 124.4 3.2e-36 1 CL0222
Cotton_A_01338_CDS 292 453 292 454 PF01554.18 MatE Family 1 159 161 124.6 2.9e-36 1 CL0222
Cotton_A_28141_CDS 40 72 40 72 PF14364.6 DUF4408 Family 1 33 33 42.6 3.5e-11 1 No_clan
Cotton_A_18379_CDS 93 137 91 138 PF00249.31 Myb_DNA-binding Domain 3 45 46 40.3 2.6e-10 1 CL0123
Cotton_A_04705_CDS 31 328 30 331 PF04756.13 OST3_OST6 Family 2 291 293 248.0 1.2e-73 1 CL0172
Cotton_A_25253_CDS 11 212 10 212 PF05997.12 Nop52 Family 2 216 216 185.0 1.6e-54 1 No_clan
Cotton_A_19044_CDS 43 166 43 167 PF02585.17 PIG-L Family 1 130 131 74.5 1.2e-20 1 No_clan
Cotton_A_11389_CDS 12 146 12 146 PF00168.30 C2 Domain 1 103 103 92.5 1.6e-26 1 CL0154
Cotton_A_11389_CDS 349 384 349 384 PF00614.22 PLDc Family 1 28 28 26.3 5.8e-06 1 CL0479
Cotton_A_15553_CDS 9 92 4 111 PF03348.15 Serinc Family 177 263 429 60.1 1.8e-16 1 No_clan
Cotton_A_32402_CDS 98 290 57 290 PF03007.16 WES_acyltransf Domain 66 264 264 52.8 4.7e-14 1 CL0149
Cotton_A_32402_CDS 356 500 356 500 PF06974.13 DUF1298 Family 1 145 145 169.2 5.1e-50 1 No_clan
Cotton_A_22690_CDS 18 84 12 84 PF07765.12 KIP1 Family 10 74 74 65.4 3.7e-18 1 No_clan
Cotton_A_08501_CDS 4 139 1 143 PF00069.25 Pkinase Domain 138 260 264 47.9 1.1e-12 1 CL0016
Cotton_A_18728_CDS 116 253 106 253 PF00305.19 Lipoxygenase Domain 302 441 674 232.2 1.2e-68 1 No_clan
Cotton_A_32907_CDS 1477 1849 1476 1849 PF00632.25 HECT Domain 2 307 307 263.8 2.3e-78 1 CL0552
Cotton_A_13710_CDS 1 110 1 129 PF00067.22 p450 Domain 334 442 463 124.1 6.5e-36 1 No_clan
Cotton_A_13664_CDS 289 350 289 350 PF04117.12 Mpv17_PMP22 Family 1 62 62 61.0 9.3e-17 1 No_clan
Cotton_A_00647_CDS 30 240 30 240 PF00314.17 Thaumatin Domain 1 214 214 279.9 1.3e-83 1 CL0293
Cotton_A_21688_CDS 61 228 60 229 PF00504.21 Chloroa_b-bind Family 2 160 161 170.9 3e-50 1 No_clan
Cotton_A_22254_CDS 101 281 101 282 PF00390.19 malic Domain 1 181 182 263.4 9.4e-79 1 CL0603
Cotton_A_22254_CDS 292 545 292 545 PF03949.15 Malic_M Domain 1 258 258 326.7 8.6e-98 1 CL0063
Cotton_A_37308_CDS 4 76 3 77 PF00240.23 ubiquitin Domain 2 71 72 67.0 8.9e-19 1 CL0072
Cotton_A_37308_CDS 156 191 152 191 PF00627.31 UBA Domain 5 37 37 51.4 7e-14 1 CL0214
Cotton_A_37308_CDS 259 314 259 315 PF09280.11 XPC-binding Domain 1 56 57 83.9 4.8e-24 1 No_clan
Cotton_A_37308_CDS 340 375 339 375 PF00627.31 UBA Domain 2 37 37 47.2 1.5e-12 1 CL0214
Cotton_A_18121_CDS 101 538 99 538 PF03222.13 Trp_Tyr_perm Family 3 394 394 321.4 8.6e-96 1 CL0062
Cotton_A_36006_CDS 208 269 208 271 PF14716.6 HHH_8 Domain 1 64 68 45.2 8.7e-12 1 CL0198
Cotton_A_34640_CDS 71 157 28 158 PF02466.19 Tim17 Family 31 110 111 47.2 2.3e-12 1 No_clan
Cotton_A_25439_CDS 3 74 3 74 PF00240.23 ubiquitin Domain 1 72 72 116.6 3e-34 1 CL0072
Cotton_A_25439_CDS 79 150 79 150 PF00240.23 ubiquitin Domain 1 72 72 97.0 3.9e-28 1 CL0072
Cotton_A_21902_CDS 40 225 40 225 PF17135.4 Ribosomal_L18 Family 1 187 187 315.7 7.2e-95 1 CL0588
Cotton_A_33386_CDS 45 134 45 134 PF00447.17 HSF_DNA-bind Domain 1 96 96 106.1 1.1e-30 1 CL0123
Cotton_A_00726_CDS 4 204 1 204 PF03492.15 Methyltransf_7 Family 130 334 334 209.4 7.8e-62 1 CL0063
Cotton_A_05987_CDS 11 158 11 160 PF03358.15 FMN_red Domain 1 153 155 123.4 6.5e-36 1 CL0042
Cotton_A_14153_CDS 30 68 28 69 PF08263.12 LRRNT_2 Family 3 40 41 35.3 1e-08 1 No_clan
Cotton_A_20772_CDS 75 160 74 160 PF04433.17 SWIRM Domain 2 89 89 80.0 1.2e-22 1 CL0123
Cotton_A_20772_CDS 295 336 293 338 PF00249.31 Myb_DNA-binding Domain 3 44 46 41.6 1.1e-10 1 CL0123
Cotton_A_20772_CDS 487 560 486 566 PF16495.5 SWIRM-assoc_1 Family 2 75 84 86.3 1e-24 1 No_clan
Cotton_A_39986_CDS 37 281 34 289 PF00139.19 Lectin_legB Domain 5 237 249 223.3 3.3e-66 1 CL0004
Cotton_A_39986_CDS 363 443 359 454 PF07714.17 Pkinase_Tyr Domain 5 71 259 28.7 7.6e-07 1 CL0016
Cotton_A_30618_CDS 14 168 14 168 PF16639.5 Apocytochr_F_N Domain 1 155 155 258.9 1.8e-77 1 No_clan
Cotton_A_29728_CDS 94 150 93 151 PF02701.15 zf-Dof Family 2 58 59 108.9 9.6e-32 1 No_clan
Cotton_A_20641_CDS 14 70 12 72 PF04193.14 PQ-loop Repeat 3 59 61 69.6 1.4e-19 1 CL0141
Cotton_A_20641_CDS 152 208 151 211 PF04193.14 PQ-loop Repeat 2 58 61 58.1 5.3e-16 1 CL0141
Cotton_A_12694_CDS 11 209 1 209 PF14009.6 DUF4228 Family 14 179 179 96.8 1.9e-27 1 No_clan
Cotton_A_03484_CDS 1 137 1 137 PF11960.8 DUF3474 Family 1 135 135 164.7 1.3e-48 1 No_clan
Cotton_A_03484_CDS 146 399 143 404 PF00487.24 FA_desaturase Domain 4 247 254 112.4 3.1e-32 1 No_clan
Cotton_A_27437_CDS 39 156 38 161 PF00638.18 Ran_BP1 Family 2 119 122 136.0 7.7e-40 1 CL0266
Cotton_A_27052_CDS 4 98 4 104 PF02362.21 B3 Family 1 95 101 37.4 1.8e-09 1 CL0405
Cotton_A_27970_CDS 58 165 57 165 PF14226.6 DIOX_N Family 4 118 118 71.8 7.9e-20 1 CL0029
Cotton_A_27970_CDS 209 313 207 314 PF03171.20 2OG-FeII_Oxy Domain 4 100 101 92.6 1.8e-26 1 CL0029
Cotton_A_35392_CDS 28 142 28 143 PF18055.1 RPN6_N Domain 1 116 117 117.1 5e-34 1 No_clan
Cotton_A_11207_CDS 5 122 2 124 PF00153.27 Mito_carr Family 7 95 97 64.2 8e-18 1 No_clan
Cotton_A_11207_CDS 128 221 126 224 PF00153.27 Mito_carr Family 3 94 97 66.6 1.4e-18 1 No_clan
Cotton_A_11207_CDS 230 320 227 322 PF00153.27 Mito_carr Family 5 94 97 68.2 4.5e-19 1 No_clan
Cotton_A_01487_CDS 56 186 56 186 PF04695.13 Pex14_N Family 1 157 157 88.9 5.4e-25 1 No_clan
Cotton_A_01487_CDS 323 371 323 372 PF17733.1 DUF5572 Family 1 47 48 47.0 1.6e-12 1 No_clan
Cotton_A_00252_CDS 233 292 225 294 PF00076.22 RRM_1 Domain 9 68 70 36.4 3.3e-09 1 CL0221
Cotton_A_00252_CDS 326 395 326 395 PF00076.22 RRM_1 Domain 1 70 70 79.1 1.6e-22 1 CL0221
Cotton_A_00252_CDS 417 533 417 534 PF15519.6 RBM39linker Domain 1 90 91 75.9 3.9e-21 1 No_clan
Cotton_A_00252_CDS 540 592 538 593 PF00076.22 RRM_1 Domain 13 69 70 25.1 1.1e-05 1 CL0221
Cotton_A_00174_CDS 9 54 9 55 PF00249.31 Myb_DNA-binding Domain 1 45 46 61.6 5.8e-17 1 CL0123
Cotton_A_00174_CDS 63 104 61 106 PF00249.31 Myb_DNA-binding Domain 3 44 46 51.3 9.6e-14 1 CL0123
Cotton_A_19571_CDS 234 408 224 415 PF00224.21 PK Family 169 341 348 190.8 2.9e-56 1 CL0151
Cotton_A_19571_CDS 434 534 433 541 PF02887.16 PK_C Domain 2 105 117 78.2 5.4e-22 1 No_clan
Cotton_A_38550_CDS 64 185 62 220 PF12146.8 Hydrolase_4 Family 3 118 239 41.8 7.3e-11 1 CL0028
Cotton_A_38201_CDS 1 123 1 124 PF00361.20 Proton_antipo_M Family 171 292 293 117.7 5.6e-34 1 CL0425
Cotton_A_15473_CDS 7 32 7 34 PF01535.20 PPR Family 1 26 31 18.0 0.0024 1 CL0020
Cotton_A_15473_CDS 81 101 78 106 PF01535.20 PPR Family 4 24 31 10.9 0.46 1 CL0020
Cotton_A_15473_CDS 107 153 106 154 PF13041.6 PPR_2 Repeat 2 49 50 33.3 4e-08 1 CL0020
Cotton_A_15473_CDS 207 253 207 256 PF13041.6 PPR_2 Repeat 1 47 50 46.9 2.3e-12 1 CL0020
Cotton_A_15473_CDS 309 356 308 357 PF13041.6 PPR_2 Repeat 2 49 50 33.0 5e-08 1 CL0020
Cotton_A_15473_CDS 383 406 382 409 PF01535.20 PPR Family 2 25 31 14.5 0.031 1 CL0020
Cotton_A_15473_CDS 449 478 448 478 PF01535.20 PPR Family 2 31 31 15.6 0.014 1 CL0020
Cotton_A_15473_CDS 482 606 482 606 PF14432.6 DYW_deaminase Family 1 127 127 142.7 5.5e-42 1 CL0109
Cotton_A_23181_CDS 80 140 79 140 PF01176.19 eIF-1a Domain 4 64 64 75.5 2.1e-21 1 CL0021
Cotton_A_27786_CDS 14 133 11 155 PF00892.20 EamA Family 4 121 137 39.9 4.3e-10 1 CL0184
Cotton_A_27786_CDS 188 326 187 327 PF00892.20 EamA Family 2 136 137 41.7 1.2e-10 1 CL0184
Cotton_A_05203_CDS 159 381 158 388 PF00931.22 NB-ARC Domain 2 230 252 217.9 1.3e-64 1 CL0023
Cotton_A_28210_CDS 24 89 24 89 PF04431.13 Pec_lyase_N Family 1 56 56 51.3 1e-13 1 No_clan
Cotton_A_28210_CDS 186 369 178 369 PF00544.19 Pec_lyase_C Domain 30 211 211 76.2 2.6e-21 1 CL0268
Cotton_A_11621_CDS 112 254 111 255 PF01694.22 Rhomboid Family 2 149 150 143.5 4.7e-42 1 CL0207
Cotton_A_22862_CDS 10 270 10 281 PF01593.24 Amino_oxidase Domain 1 263 452 65.0 7.5e-18 1 CL0063
Cotton_A_22862_CDS 591 863 589 864 PF02353.20 CMAS Family 3 272 273 285.6 3.5e-85 1 CL0063
Cotton_A_09072_CDS 57 595 57 596 PF02990.16 EMP70 Family 1 518 519 728.6 4e-219 1 No_clan
Cotton_A_40180_CDS 25 185 25 185 PF01554.18 MatE Family 1 161 161 73.3 1.7e-20 1 CL0222
Cotton_A_20932_CDS 215 364 192 373 PF00201.18 UDPGT Family 270 403 499 58.9 3.9e-16 1 CL0113
Cotton_A_09399_CDS 2 264 1 264 PF00332.18 Glyco_hydro_17 Domain 52 313 313 224.3 2.8e-66 1 CL0058
Cotton_A_09399_CDS 272 342 271 343 PF07983.13 X8 Domain 2 75 76 67.8 9.7e-19 1 No_clan
Cotton_A_09399_CDS 357 577 357 583 PF00332.18 Glyco_hydro_17 Domain 1 224 313 165.1 2.8e-48 1 CL0058
Cotton_A_09399_CDS 647 714 641 714 PF00332.18 Glyco_hydro_17 Domain 248 313 313 62.2 5.8e-17 1 CL0058
Cotton_A_09399_CDS 723 793 722 794 PF07983.13 X8 Domain 2 75 76 77.2 1.2e-21 1 No_clan
Cotton_A_19222_CDS 27 104 27 104 PF14569.6 zf-UDP Domain 1 78 78 145.6 3.6e-43 1 CL0229
Cotton_A_29753_CDS 46 98 45 102 PF00013.29 KH_1 Domain 2 55 66 41.2 1.1e-10 1 CL0007
Cotton_A_29753_CDS 138 203 136 205 PF00013.29 KH_1 Domain 3 64 66 36.6 2.9e-09 1 CL0007
Cotton_A_29753_CDS 305 368 304 368 PF00013.29 KH_1 Domain 2 66 66 44.0 1.4e-11 1 CL0007
Cotton_A_09035_CDS 117 218 116 222 PF16719.5 SAWADEE Domain 2 108 141 104.7 4e-30 1 CL0049
Cotton_A_28449_CDS 97 439 96 439 PF10250.9 O-FucT Family 2 336 336 245.7 1e-72 1 CL0113
Cotton_A_36463_CDS 114 228 112 229 PF00664.23 ABC_membrane Family 3 120 274 48.0 1.2e-12 1 CL0241
Cotton_A_36463_CDS 251 391 249 392 PF00664.23 ABC_membrane Family 133 273 274 65.4 6.4e-18 1 CL0241
Cotton_A_36463_CDS 498 649 498 649 PF00005.27 ABC_tran Domain 1 137 137 114.2 6.4e-33 1 CL0023
Cotton_A_10482_CDS 261 378 236 406 PF00201.18 UDPGT Family 271 386 499 81.2 6.9e-23 1 CL0113
Cotton_A_13613_CDS 172 261 171 269 PF00781.24 DAGK_cat Family 2 89 126 61.8 4.6e-17 1 CL0240
Cotton_A_01605_CDS 272 341 271 343 PF04564.15 U-box Domain 2 71 73 65.5 3.6e-18 1 CL0229
Cotton_A_27629_CDS 124 160 123 160 PF01985.21 CRS1_YhbY Domain 2 38 84 21.2 0.00024 1 No_clan
Cotton_A_23602_CDS 12 59 10 60 PF00847.20 AP2 Domain 3 53 54 38.5 9.7e-10 1 CL0081
Cotton_A_26127_CDS 58 107 58 112 PF00929.24 RNase_T Family 1 49 165 40.0 5.7e-10 1 CL0219
Cotton_A_22212_CDS 29 137 28 138 PF13947.6 GUB_WAK_bind Domain 2 105 106 95.5 3e-27 1 No_clan
Cotton_A_22212_CDS 327 593 327 596 PF00069.25 Pkinase Domain 1 258 264 171.5 2.1e-50 1 CL0016
Cotton_A_21855_CDS 44 430 43 430 PF03514.14 GRAS Family 2 374 374 300.2 2e-89 1 CL0063
Cotton_A_05797_CDS 29 152 28 155 PF01592.16 NifU_N Family 2 126 129 188.1 5.8e-56 1 CL0233
Cotton_A_28401_CDS 39 362 38 362 PF03492.15 Methyltransf_7 Family 2 334 334 441.5 2e-132 1 CL0063
Cotton_A_27964_CDS 55 163 55 167 PF14226.6 DIOX_N Family 1 116 118 82.0 5.4e-23 1 CL0029
Cotton_A_27964_CDS 209 312 206 313 PF03171.20 2OG-FeII_Oxy Domain 4 100 101 92.4 2e-26 1 CL0029
Cotton_A_32341_CDS 119 174 119 175 PF00046.29 Homeodomain Domain 1 56 57 66.9 1e-18 1 CL0123
Cotton_A_32341_CDS 326 550 326 550 PF01852.19 START Domain 1 209 209 200.5 2e-59 1 CL0209
Cotton_A_23879_CDS 17 193 16 203 PF00248.21 Aldo_ket_red Domain 2 172 294 107.1 9.3e-31 1 No_clan
Cotton_A_25505_CDS 12 345 11 348 PF00962.22 A_deaminase Domain 2 325 328 128.4 3.7e-37 1 CL0034
Cotton_A_26523_CDS 94 214 94 216 PF13456.6 RVT_3 Domain 1 122 124 85.8 1.9e-24 1 CL0219
Cotton_A_29973_CDS 76 467 64 482 PF00067.22 p450 Domain 47 445 463 215.8 9.5e-64 1 No_clan
Cotton_A_23520_CDS 25 114 25 114 PF00447.17 HSF_DNA-bind Domain 1 96 96 96.3 1.2e-27 1 CL0123
Cotton_A_00072_CDS 48 84 46 85 PF08263.12 LRRNT_2 Family 3 40 41 22.4 0.00012 1 No_clan
Cotton_A_00072_CDS 120 177 118 178 PF13855.6 LRR_8 Repeat 3 60 61 31.7 9.4e-08 1 CL0022
Cotton_A_00072_CDS 262 319 261 320 PF13855.6 LRR_8 Repeat 2 59 61 29.6 4.2e-07 1 CL0022
Cotton_A_15066_CDS 399 536 391 545 PF02833.14 DHHA2 Family 9 133 143 50.0 3.3e-13 1 No_clan
Cotton_A_27983_CDS 158 306 158 306 PF01590.26 GAF Domain 1 133 133 51.5 1.5e-13 1 CL0161
Cotton_A_27983_CDS 343 407 342 407 PF00512.25 HisKA Domain 2 67 67 60.8 9.2e-17 1 CL0025
Cotton_A_27983_CDS 454 584 454 586 PF02518.26 HATPase_c Domain 1 110 112 106.9 7.9e-31 1 CL0025
Cotton_A_27983_CDS 615 726 615 728 PF00072.24 Response_reg Domain 1 110 112 58.3 7.5e-16 1 CL0304
Cotton_A_12019_CDS 55 206 55 207 PF00719.19 Pyrophosphatase Domain 1 159 160 187.4 1.5e-55 1 No_clan
Cotton_A_22812_CDS 7 230 6 240 PF16746.5 BAR_3 Domain 7 227 238 126.5 1.3e-36 1 CL0145
Cotton_A_22812_CDS 295 423 294 424 PF00169.29 PH Domain 2 104 105 49.9 3.7e-13 1 CL0266
Cotton_A_22812_CDS 471 596 467 598 PF01412.18 ArfGap Domain 5 115 117 117.1 4.4e-34 1 No_clan
Cotton_A_22812_CDS 670 750 663 769 PF12796.7 Ank_2 Repeat 10 82 83 34.7 1.9e-08 1 CL0465
Cotton_A_35575_CDS 8 104 3 104 PF03297.15 Ribosomal_S25 Family 5 101 101 144.2 1.2e-42 1 CL0123
Cotton_A_00725_CDS 159 291 158 292 PF00004.29 AAA Domain 2 131 132 58.9 6.8e-16 1 CL0023
Cotton_A_38431_CDS 110 136 110 136 PF05553.11 DUF761 Family 1 27 36 44.7 6.8e-12 1 No_clan
Cotton_A_10442_CDS 1 73 1 74 PF04950.12 RIBIOP_C Family 233 291 292 54.4 1.2e-14 1 CL0575
Cotton_A_20615_CDS 51 104 47 104 PF01471.18 PG_binding_1 Domain 8 57 57 50.1 2.4e-13 1 CL0244
Cotton_A_20615_CDS 138 293 138 294 PF00413.24 Peptidase_M10 Domain 1 157 158 159.8 4.7e-47 1 CL0126
Cotton_A_24365_CDS 41 175 40 176 PF09750.9 DRY_EERY Domain 2 134 135 132.7 9.7e-39 1 No_clan
Cotton_A_01849_CDS 62 140 29 147 PF05097.12 DUF688 Family 60 113 446 20.4 0.00024 1 No_clan
Cotton_A_01643_CDS 99 351 67 363 PF05055.12 DUF677 Family 60 324 336 185.2 1.4e-54 1 CL0133
Cotton_A_19428_CDS 28 62 21 62 PF00010.26 HLH Domain 21 53 53 23.0 5.9e-05 1 No_clan
Cotton_A_37162_CDS 95 199 90 199 PF02330.16 MAM33 Domain 102 212 212 64.1 1.7e-17 1 No_clan
Cotton_A_32188_CDS 81 491 77 492 PF00450.22 Peptidase_S10 Domain 2 418 419 467.0 7.6e-140 1 CL0028
Cotton_A_25134_CDS 226 263 226 264 PF03470.14 zf-XS Domain 1 42 43 23.8 4.1e-05 1 No_clan
Cotton_A_25134_CDS 297 410 297 412 PF03468.14 XS Domain 1 111 113 117.1 4.6e-34 1 CL0221
Cotton_A_11581_CDS 36 112 32 113 PF06155.12 DUF971 Family 8 84 85 73.9 1.2e-20 1 No_clan
Cotton_A_35178_CDS 53 146 53 161 PF14226.6 DIOX_N Family 1 98 118 89.3 2.9e-25 1 CL0029
Cotton_A_35178_CDS 196 281 176 283 PF03171.20 2OG-FeII_Oxy Domain 14 99 101 62.7 3.6e-17 1 CL0029
Cotton_A_34538_CDS 6 52 6 52 PF16891.5 STPPase_N Family 1 48 48 69.1 3.1e-19 1 No_clan
Cotton_A_34538_CDS 54 245 53 248 PF00149.28 Metallophos Domain 2 201 204 145.4 3.1e-42 1 CL0163
Cotton_A_40370_CDS 72 510 71 525 PF00067.22 p450 Domain 2 447 463 284.4 1.5e-84 1 No_clan
Cotton_A_11957_CDS 56 95 55 95 PF03911.16 Sec61_beta Family 2 41 41 70.8 7e-20 1 No_clan
Cotton_A_06135_CDS 106 227 104 227 PF07889.12 DUF1664 Coiled-coil 3 124 124 160.5 1.7e-47 1 No_clan
Cotton_A_28389_CDS 33 319 32 319 PF00069.25 Pkinase Domain 2 264 264 233.1 3.5e-69 1 CL0016
Cotton_A_00573_CDS 576 806 574 807 PF04842.12 DUF639 Family 3 230 231 291.7 3.4e-87 1 CL0484
Cotton_A_05378_CDS 55 120 55 122 PF00366.20 Ribosomal_S17 Domain 1 66 68 83.9 6.1e-24 1 CL0021
Cotton_A_23659_CDS 81 123 81 124 PF06203.14 CCT Motif 1 43 44 62.0 3.9e-17 1 CL0281
Cotton_A_38784_CDS 13 128 5 131 PF03004.14 Transposase_24 Family 17 139 142 59.7 3.2e-16 1 No_clan
Cotton_A_30171_CDS 15 130 13 130 PF01397.21 Terpene_synth Domain 72 192 192 133.5 6.9e-39 1 No_clan
Cotton_A_30171_CDS 154 290 135 290 PF03936.16 Terpene_synth_C Domain 108 245 267 150.4 5.8e-44 1 CL0613
Cotton_A_04404_CDS 16 366 13 366 PF03514.14 GRAS Family 4 374 374 92.6 2.4e-26 1 CL0063
Cotton_A_16942_CDS 2 226 2 226 PF12481.8 DUF3700 Domain 1 228 228 298.6 2.5e-89 1 CL0052
Cotton_A_22299_CDS 30 68 29 69 PF08263.12 LRRNT_2 Family 2 40 41 33.8 3e-08 1 No_clan
Cotton_A_22299_CDS 122 181 121 181 PF13855.6 LRR_8 Repeat 2 61 61 32.9 3.9e-08 1 CL0022
Cotton_A_22299_CDS 186 230 182 230 PF13855.6 LRR_8 Repeat 17 61 61 29.2 5.5e-07 1 CL0022
Cotton_A_22299_CDS 308 352 301 352 PF13855.6 LRR_8 Repeat 17 61 61 28.9 7.2e-07 1 CL0022
Cotton_A_22299_CDS 478 500 478 502 PF00560.33 LRR_1 Repeat 1 23 23 9.9 1.3 1 CL0022
Cotton_A_22299_CDS 671 730 670 730 PF13855.6 LRR_8 Repeat 2 61 61 29.7 3.9e-07 1 CL0022
Cotton_A_22299_CDS 838 1008 838 1018 PF00069.25 Pkinase Domain 1 168 264 117.5 6.5e-34 1 CL0016
Cotton_A_35253_CDS 37 99 37 149 PF00173.28 Cyt-b5 Domain 1 61 74 40.7 2e-10 1 No_clan
Cotton_A_27689_CDS 292 520 292 531 PF04437.13 RINT1_TIP1 Family 1 208 499 33.5 2.2e-08 1 No_clan
Cotton_A_05009_CDS 11 552 11 552 PF05918.11 API5 Family 1 519 519 711.2 8.5e-214 1 CL0020
Cotton_A_02325_CDS 116 163 114 182 PF01842.25 ACT Domain 3 53 67 31.9 7.9e-08 1 CL0070
Cotton_A_02325_CDS 246 295 245 301 PF01842.25 ACT Domain 2 52 67 28.9 7.1e-07 1 CL0070
Cotton_A_28413_CDS 11 91 9 118 PF18052.1 Rx_N Domain 3 83 93 78.7 3e-22 1 No_clan
Cotton_A_28413_CDS 171 410 168 411 PF00931.22 NB-ARC Domain 4 251 252 153.4 6.2e-45 1 CL0023
Cotton_A_12490_CDS 72 187 72 190 PF00012.20 HSP70 Family 1 117 599 146.2 1e-42 1 CL0108
Cotton_A_08120_CDS 55 108 52 109 PF00403.26 HMA Domain 4 61 62 42.9 5.1e-11 1 No_clan
Cotton_A_01167_CDS 28 114 24 122 PF00651.31 BTB Domain 10 98 111 32.9 5.9e-08 1 CL0033
Cotton_A_01167_CDS 211 463 211 463 PF03000.14 NPH3 Family 1 258 258 279.6 2.6e-83 1 No_clan
Cotton_A_28882_CDS 45 237 45 237 PF07800.12 DUF1644 Family 1 168 168 242.6 2.2e-72 1 CL0229
Cotton_A_23712_CDS 91 556 90 557 PF00982.21 Glyco_transf_20 Family 2 473 474 619.2 4.4e-186 1 CL0113
Cotton_A_23712_CDS 619 822 604 837 PF02358.16 Trehalose_PPase Family 20 217 233 178.5 1.1e-52 1 CL0137
Cotton_A_29816_CDS 163 427 163 427 PF05705.14 DUF829 Domain 1 241 241 227.9 1.6e-67 1 CL0028
Cotton_A_11445_CDS 11 174 11 174 PF04939.12 RRS1 Family 1 162 162 170.1 3.4e-50 1 No_clan
Cotton_A_03693_CDS 93 149 93 149 PF03106.15 WRKY Domain 1 59 59 83.4 9.4e-24 1 CL0274
Cotton_A_03693_CDS 266 323 266 323 PF03106.15 WRKY Domain 1 59 59 90.6 5.3e-26 1 CL0274
Cotton_A_04726_CDS 49 142 48 143 PF00564.24 PB1 Domain 2 83 84 63.5 1.3e-17 1 CL0072
Cotton_A_36760_CDS 61 333 61 334 PF01650.18 Peptidase_C13 Family 1 255 256 368.0 2.5e-110 1 CL0093
Cotton_A_16062_CDS 5 165 5 166 PF00071.22 Ras Domain 1 161 162 224.8 4.2e-67 1 CL0023
Cotton_A_15657_CDS 93 176 92 176 PF14159.6 CAAD Domain 2 85 85 98.8 1.1e-28 1 No_clan
Cotton_A_00039_CDS 76 439 76 440 PF01979.20 Amidohydro_1 Domain 1 343 344 192.3 1.4e-56 1 CL0034
Cotton_A_00039_CDS 551 697 538 698 PF00160.21 Pro_isomerase Domain 9 157 158 166.9 3.9e-49 1 CL0475
Cotton_A_25283_CDS 98 123 98 145 PF00786.28 PBD Domain 1 27 59 26.9 4.5e-06 1 No_clan
Cotton_A_31063_CDS 35 268 27 271 PF00141.23 peroxidase Domain 9 226 229 255.4 4.9e-76 1 CL0617
Cotton_A_07203_CDS 57 190 55 195 PF01565.23 FAD_binding_4 Domain 3 130 139 61.9 5.1e-17 1 CL0077
Cotton_A_07203_CDS 431 527 410 529 PF04030.14 ALO Family 163 258 260 54.4 1.5e-14 1 CL0277
Cotton_A_09663_CDS 14 79 14 79 PF00808.23 CBFD_NFYB_HMF Domain 1 65 65 73.2 1.5e-20 1 CL0012
Cotton_A_41311_CDS 138 259 134 261 PF01529.20 DHHC Family 5 132 134 114.9 2.7e-33 1 No_clan
Cotton_A_01732_CDS 36 133 36 134 PF03195.14 LOB Family 1 98 99 141.1 1.3e-41 1 No_clan
Cotton_A_01594_CDS 61 89 32 89 PF03765.15 CRAL_TRIO_N Domain 27 54 54 25.8 8.7e-06 1 CL0214
Cotton_A_01594_CDS 114 271 112 277 PF00650.20 CRAL_TRIO Domain 3 151 159 100.8 5.9e-29 1 CL0512
Cotton_A_21616_CDS 11 52 10 58 PF00319.18 SRF-TF Domain 2 43 48 49.1 2.9e-13 1 No_clan
Cotton_A_11317_CDS 23 56 23 56 PF12854.7 PPR_1 Repeat 1 34 34 55.4 3.4e-15 1 CL0020
Cotton_A_11317_CDS 59 91 58 91 PF12854.7 PPR_1 Repeat 2 34 34 28.6 8.1e-07 1 CL0020
Cotton_A_11317_CDS 132 186 127 189 PF13812.6 PPR_3 Repeat 6 60 63 24.0 3.1e-05 1 CL0020
Cotton_A_26987_CDS 60 124 59 125 PF00013.29 KH_1 Domain 2 65 66 46.2 2.9e-12 1 CL0007
Cotton_A_26987_CDS 155 224 155 225 PF00013.29 KH_1 Domain 1 64 66 42.3 4.7e-11 1 CL0007
Cotton_A_26987_CDS 266 329 266 330 PF00013.29 KH_1 Domain 1 65 66 42.8 3.4e-11 1 CL0007
Cotton_A_26987_CDS 476 541 473 563 PF00254.28 FKBP_C Domain 5 70 94 56.0 3.8e-15 1 CL0487
Cotton_A_03875_CDS 47 150 47 158 PF13676.6 TIR_2 Domain 1 109 118 53.9 2.4e-14 1 CL0173
Cotton_A_12551_CDS 6 68 5 71 PF18052.1 Rx_N Domain 2 60 93 28.6 1.3e-06 1 No_clan
Cotton_A_12551_CDS 79 183 71 187 PF00782.20 DSPc Domain 8 107 133 50.4 1.8e-13 1 CL0031
Cotton_A_17441_CDS 68 105 66 111 PF00646.33 F-box Domain 3 40 48 25.7 7.3e-06 1 CL0271
Cotton_A_17441_CDS 162 202 157 203 PF01344.25 Kelch_1 Repeat 6 45 46 20.4 0.00028 1 CL0186
Cotton_A_17441_CDS 205 252 205 252 PF01344.25 Kelch_1 Repeat 1 46 46 53.8 1.1e-14 1 CL0186
Cotton_A_12978_CDS 11 220 1 221 PF06485.11 Tab2_like Family 57 267 268 200.7 3.2e-59 1 No_clan
Cotton_A_10098_CDS 39 74 39 83 PF08704.10 GCD14 Family 1 36 247 51.6 1e-13 1 CL0063
Cotton_A_08254_CDS 1908 1936 1908 1937 PF12166.8 Piezo_RRas_bdg Family 1 29 425 40.4 2.2e-10 1 No_clan
Cotton_A_28020_CDS 93 142 93 142 PF13041.6 PPR_2 Repeat 1 50 50 34.1 2.3e-08 1 CL0020
Cotton_A_28020_CDS 197 224 197 227 PF01535.20 PPR Family 1 28 31 22.5 8.9e-05 1 CL0020
Cotton_A_28020_CDS 226 273 225 274 PF13041.6 PPR_2 Repeat 2 49 50 50.4 1.9e-13 1 CL0020
Cotton_A_28020_CDS 327 374 326 375 PF13041.6 PPR_2 Repeat 2 49 50 37.9 1.5e-09 1 CL0020
Cotton_A_28020_CDS 401 428 400 430 PF01535.20 PPR Family 2 29 31 24.9 1.5e-05 1 CL0020
Cotton_A_28020_CDS 431 476 428 477 PF13041.6 PPR_2 Repeat 4 49 50 40.8 1.8e-10 1 CL0020
Cotton_A_28020_CDS 504 529 503 531 PF01535.20 PPR Family 3 28 31 17.7 0.0031 1 CL0020
Cotton_A_28020_CDS 602 726 602 726 PF14432.6 DYW_deaminase Family 1 127 127 121.8 1.5e-35 1 CL0109
Cotton_A_08996_CDS 20 362 19 365 PF00224.21 PK Family 2 345 348 532.7 3.2e-160 1 CL0151
Cotton_A_08996_CDS 380 499 380 507 PF02887.16 PK_C Domain 1 104 117 83.8 1e-23 1 No_clan
Cotton_A_02012_CDS 44 242 44 242 PF00804.25 Syntaxin Domain 1 200 200 171.8 1.4e-50 1 CL0445
Cotton_A_21733_CDS 12 102 10 102 PF14368.6 LTP_2 Family 3 97 97 35.6 7.6e-09 1 CL0482
Cotton_A_27853_CDS 12 104 9 104 PF02519.14 Auxin_inducible Family 4 90 90 61.0 9.3e-17 1 No_clan
Cotton_A_23328_CDS 15 62 15 62 PF00249.31 Myb_DNA-binding Domain 1 46 46 59.7 2.3e-16 1 CL0123
Cotton_A_23328_CDS 68 113 68 113 PF00249.31 Myb_DNA-binding Domain 1 46 46 56.4 2.4e-15 1 CL0123
Cotton_A_13586_CDS 2 91 1 102 PF00168.30 C2 Domain 2 95 103 56.0 4e-15 1 CL0154
Cotton_A_13586_CDS 246 395 245 395 PF16016.5 VASt Domain 2 154 154 95.8 3.3e-27 1 CL0209
Cotton_A_13586_CDS 529 630 528 630 PF00168.30 C2 Domain 2 103 103 50.1 2.7e-13 1 CL0154
Cotton_A_13586_CDS 682 748 681 785 PF02893.20 GRAM Domain 2 70 114 50.9 1.2e-13 1 CL0266
Cotton_A_13586_CDS 849 996 848 998 PF16016.5 VASt Domain 2 152 154 76.6 2.7e-21 1 CL0209
Cotton_A_21817_CDS 1 156 1 156 PF00407.19 Bet_v_1 Domain 1 151 151 86.4 1.7e-24 1 CL0209
Cotton_A_22238_CDS 322 391 322 392 PF04542.14 Sigma70_r2 Domain 1 70 71 51.6 5.7e-14 1 CL0123
Cotton_A_22238_CDS 403 476 401 478 PF04539.16 Sigma70_r3 Family 3 76 78 37.7 1.6e-09 1 CL0123
Cotton_A_22238_CDS 490 543 490 543 PF04545.16 Sigma70_r4 Domain 1 50 50 47.3 1.1e-12 1 CL0123
Cotton_A_24320_CDS 90 188 90 188 PF04526.13 DUF568 Family 1 101 101 92.0 3.3e-26 1 No_clan
Cotton_A_13434_CDS 13 75 9 76 PF05922.16 Inhibitor_I9 Domain 19 81 82 37.1 3.8e-09 1 CL0570
Cotton_A_13434_CDS 99 545 97 547 PF00082.22 Peptidase_S8 Domain 3 296 298 165.5 1.6e-48 1 No_clan
Cotton_A_13434_CDS 606 706 605 706 PF17766.1 fn3_6 Domain 2 99 99 80.3 9.3e-23 1 CL0159
Cotton_A_21561_CDS 9 54 9 55 PF00249.31 Myb_DNA-binding Domain 1 45 46 59.6 2.5e-16 1 CL0123
Cotton_A_21561_CDS 63 104 61 106 PF00249.31 Myb_DNA-binding Domain 3 44 46 57.0 1.5e-15 1 CL0123
Cotton_A_26760_CDS 15 109 15 109 PF12796.7 Ank_2 Repeat 1 83 83 53.3 3.2e-14 1 CL0465
Cotton_A_26760_CDS 112 184 106 189 PF12796.7 Ank_2 Repeat 25 78 83 39.6 5.8e-10 1 CL0465
Cotton_A_26760_CDS 196 230 186 236 PF13857.6 Ank_5 Repeat 16 50 56 27.6 2.6e-06 1 CL0465
Cotton_A_01133_CDS 88 515 79 520 PF00067.22 p450 Domain 22 458 463 253.1 4.7e-75 1 No_clan
Cotton_A_22603_CDS 37 256 34 258 PF01940.16 DUF92 Family 4 234 236 165.4 1.4e-48 1 No_clan
Cotton_A_33762_CDS 157 323 153 326 PF00953.21 Glycos_transf_4 Family 5 157 160 80.9 9.9e-23 1 No_clan
Cotton_A_15021_CDS 4 236 3 236 PF04065.15 Not3 Family 2 231 231 278.3 4.3e-83 1 No_clan
Cotton_A_15021_CDS 741 881 739 881 PF04153.18 NOT2_3_5 Family 3 131 131 132.0 1.4e-38 1 No_clan
Cotton_A_40838_CDS 1 162 1 163 PF05620.11 TMEM208_SND2 Family 1 167 168 185.2 7.7e-55 1 No_clan
Cotton_A_40633_CDS 34 349 32 361 PF00743.19 FMO-like Family 6 335 532 99.0 2.1e-28 1 CL0063
Cotton_A_14587_CDS 24 98 24 99 PF00935.19 Ribosomal_L44 Family 1 75 76 120.0 4.2e-35 1 CL0167
Cotton_A_41030_CDS 71 96 69 104 PF00010.26 HLH Domain 4 29 53 31.5 1.3e-07 1 No_clan
Cotton_A_08222_CDS 32 145 32 153 PF01734.22 Patatin Family 1 109 204 39.1 8.8e-10 1 CL0323
Cotton_A_06855_CDS 100 525 100 537 PF05761.14 5_nucleotid Family 1 401 458 487.9 3e-146 1 CL0137
Cotton_A_05207_CDS 212 245 212 247 PF00320.27 GATA Domain 1 34 36 52.5 2.7e-14 1 CL0167
Cotton_A_31024_CDS 237 278 237 278 PF13414.6 TPR_11 Repeat 1 42 42 28.0 1.2e-06 1 CL0020
Cotton_A_31024_CDS 300 331 300 333 PF13176.6 TPR_7 Repeat 1 34 36 17.2 0.0038 1 CL0020
Cotton_A_31024_CDS 420 458 418 463 PF13428.6 TPR_14 Repeat 3 41 44 25.0 2e-05 1 CL0020
Cotton_A_29756_CDS 26 63 22 66 PF10509.9 GalKase_gal_bdg Domain 8 44 49 25.5 7.2e-06 1 CL0329
Cotton_A_29756_CDS 153 209 146 211 PF00288.26 GHMP_kinases_N Family 11 64 66 27.1 3.7e-06 1 CL0329
Cotton_A_29756_CDS 332 408 324 410 PF08544.13 GHMP_kinases_C Family 6 83 85 38.0 1.6e-09 1 CL0677
Cotton_A_34364_CDS 36 92 35 93 PF02701.15 zf-Dof Family 2 58 59 113.5 3.5e-33 1 No_clan
Cotton_A_26246_CDS 60 206 59 207 PF00190.22 Cupin_1 Domain 2 150 151 173.5 2.1e-51 1 CL0029
Cotton_A_33675_CDS 32 141 29 142 PF01398.21 JAB Family 4 117 118 104.7 2.8e-30 1 CL0366
Cotton_A_29986_CDS 7 187 7 188 PF01251.18 Ribosomal_S7e Family 1 183 184 271.2 4e-81 1 CL0652
Cotton_A_11172_CDS 6 159 5 159 PF08534.10 Redoxin Domain 2 147 147 112.0 1.9e-32 1 CL0172
Cotton_A_14798_CDS 34 69 33 69 PF05627.11 AvrRpt-cleavage Domain 2 37 37 80.7 3.4e-23 1 No_clan
Cotton_A_16156_CDS 151 392 151 392 PF07891.12 DUF1666 Family 1 246 246 258.3 7.5e-77 1 No_clan
Cotton_A_16116_CDS 364 443 364 444 PF17849.1 OB_Dis3 Domain 1 76 77 59.8 1.9e-16 1 CL0021
Cotton_A_16116_CDS 473 824 473 826 PF00773.19 RNB Domain 1 324 326 326.5 2e-97 1 No_clan
Cotton_A_23504_CDS 469 533 469 533 PF00333.20 Ribosomal_S5 Domain 1 65 65 65.6 3e-18 1 CL0196
Cotton_A_23504_CDS 547 615 545 615 PF03719.15 Ribosomal_S5_C Domain 3 71 72 78.3 2.2e-22 1 CL0329
Cotton_A_36039_CDS 197 238 197 239 PF05182.13 Fip1 Motif 1 42 43 71.0 4.1e-20 1 No_clan
Cotton_A_11971_CDS 69 95 68 98 PF01535.20 PPR Family 2 28 31 13.2 0.082 1 CL0020
Cotton_A_11971_CDS 168 216 167 216 PF13041.6 PPR_2 Repeat 2 50 50 54.5 9.8e-15 1 CL0020
Cotton_A_11971_CDS 243 269 243 270 PF01535.20 PPR Family 4 30 31 13.4 0.07 1 CL0020
Cotton_A_11971_CDS 271 318 270 319 PF13041.6 PPR_2 Repeat 2 49 50 40.9 1.7e-10 1 CL0020
Cotton_A_11971_CDS 346 370 346 373 PF01535.20 PPR Family 4 28 31 18.0 0.0023 1 CL0020
Cotton_A_11971_CDS 372 418 371 420 PF13041.6 PPR_2 Repeat 2 48 50 43.5 2.7e-11 1 CL0020
Cotton_A_11971_CDS 472 520 472 521 PF13041.6 PPR_2 Repeat 1 49 50 39.1 6.2e-10 1 CL0020
Cotton_A_11971_CDS 547 569 546 573 PF01535.20 PPR Family 2 24 31 14.5 0.031 1 CL0020
Cotton_A_11971_CDS 614 643 613 643 PF01535.20 PPR Family 2 31 31 10.7 0.53 1 CL0020
Cotton_A_32599_CDS 46 292 43 293 PF00141.23 peroxidase Domain 4 228 229 240.7 1.6e-71 1 CL0617
Cotton_A_16562_CDS 50 115 49 129 PF03893.16 Lipase3_N Domain 2 66 76 65.1 4.4e-18 1 CL0028
Cotton_A_16562_CDS 184 321 183 324 PF01764.25 Lipase_3 Family 2 139 142 84.8 4.8e-24 1 CL0028
Cotton_A_31445_CDS 29 406 29 406 PF03140.15 DUF247 Family 1 397 397 392.2 3.1e-117 1 No_clan
Cotton_A_19766_CDS 20 143 19 144 PF05811.13 DUF842 Family 2 130 131 126.8 4.1e-37 1 No_clan
Cotton_A_24736_CDS 48 104 48 104 PF11961.8 DUF3475 Family 1 57 57 86.8 7.3e-25 1 No_clan
Cotton_A_09204_CDS 26 63 24 64 PF08263.12 LRRNT_2 Family 3 40 41 43.9 2.1e-11 1 No_clan
Cotton_A_09204_CDS 308 509 306 553 PF00069.25 Pkinase Domain 3 198 264 148.3 2.6e-43 1 CL0016
Cotton_A_38230_CDS 43 312 38 313 PF00664.23 ABC_membrane Family 6 273 274 195.2 1.7e-57 1 CL0241
Cotton_A_38230_CDS 381 529 380 529 PF00005.27 ABC_tran Domain 2 137 137 113.1 1.4e-32 1 CL0023
Cotton_A_38230_CDS 685 956 684 958 PF00664.23 ABC_membrane Family 2 272 274 169.9 8.6e-50 1 CL0241
Cotton_A_38230_CDS 1026 1174 1025 1174 PF00005.27 ABC_tran Domain 2 137 137 113.3 1.2e-32 1 CL0023
Cotton_A_39510_CDS 209 492 208 492 PF03000.14 NPH3 Family 2 258 258 316.6 1.4e-94 1 No_clan
Cotton_A_15647_CDS 1 159 1 192 PF14009.6 DUF4228 Family 1 158 179 73.9 2.1e-20 1 No_clan
Cotton_A_33030_CDS 60 81 59 81 PF00560.33 LRR_1 Repeat 2 23 23 14.4 0.043 1 CL0022
Cotton_A_04629_CDS 21 567 17 571 PF07058.11 MAP70 Family 7 548 554 688.4 7.9e-207 1 No_clan
Cotton_A_25222_CDS 1 84 1 87 PF00705.18 PCNA_N Domain 40 123 127 101.9 2e-29 1 CL0060
Cotton_A_25222_CDS 89 215 88 215 PF02747.15 PCNA_C Domain 2 128 128 172.8 3.3e-51 1 CL0060
Cotton_A_37715_CDS 88 216 88 218 PF03641.14 Lysine_decarbox Family 1 130 132 152.0 9.2e-45 1 CL0349
Cotton_A_13347_CDS 8 73 7 73 PF00226.31 DnaJ Domain 2 63 63 74.6 5.1e-21 1 CL0392
Cotton_A_24435_CDS 94 189 92 195 PF04278.12 Tic22 Family 56 150 246 123.4 9.6e-36 1 No_clan
Cotton_A_31909_CDS 79 220 77 220 PF04043.15 PMEI Domain 3 154 154 47.7 2e-12 1 No_clan
Cotton_A_29199_CDS 150 506 150 506 PF03514.14 GRAS Family 1 374 374 345.6 3.1e-103 1 CL0063
Cotton_A_18202_CDS 31 135 30 136 PF13947.6 GUB_WAK_bind Domain 2 105 106 66.9 2.3e-18 1 No_clan
Cotton_A_18202_CDS 250 351 248 352 PF13947.6 GUB_WAK_bind Domain 6 105 106 55.4 8.8e-15 1 No_clan
Cotton_A_18202_CDS 568 840 568 843 PF00069.25 Pkinase Domain 1 259 264 165.4 1.5e-48 1 CL0016
Cotton_A_18202_CDS 829 1037 814 1046 PF01150.17 GDA1_CD39 Family 38 257 423 122.7 1.5e-35 1 CL0108
Cotton_A_14400_CDS 42 106 36 107 PF00240.23 ubiquitin Domain 8 71 72 48.3 6.3e-13 1 CL0072
Cotton_A_14400_CDS 112 184 112 185 PF00240.23 ubiquitin Domain 1 71 72 42.0 5.6e-11 1 CL0072
Cotton_A_14400_CDS 290 539 290 540 PF00454.27 PI3_PI4_kinase Family 1 249 250 167.5 4.7e-49 1 CL0016
Cotton_A_25612_CDS 34 100 33 142 PF13947.6 GUB_WAK_bind Domain 2 67 106 36.6 5.8e-09 1 No_clan
Cotton_A_25612_CDS 164 233 137 241 PF14380.6 WAK_assoc Domain 20 95 104 29.8 8e-07 1 No_clan
Cotton_A_10803_CDS 31 191 29 191 PF04833.15 COBRA Family 3 165 165 205.3 5.3e-61 1 No_clan
Cotton_A_15879_CDS 25 344 24 344 PF03662.14 Glyco_hydro_79n Domain 2 318 318 499.7 2.6e-150 1 CL0058
Cotton_A_07095_CDS 25 65 24 65 PF08263.12 LRRNT_2 Family 2 41 41 37.2 2.7e-09 1 No_clan
Cotton_A_07095_CDS 141 200 140 200 PF13855.6 LRR_8 Repeat 2 61 61 31.8 9e-08 1 CL0022
Cotton_A_07095_CDS 416 677 412 677 PF07714.17 Pkinase_Tyr Domain 5 259 259 138.2 2.9e-40 1 CL0016
Cotton_A_16903_CDS 1 212 1 215 PF03059.16 NAS Family 60 271 276 287.4 1.1e-85 1 CL0063
Cotton_A_23389_CDS 2 18 1 19 PF08263.12 LRRNT_2 Family 23 40 41 21.2 0.00026 1 No_clan
Cotton_A_23389_CDS 119 179 119 179 PF13855.6 LRR_8 Repeat 1 61 61 30.0 3.3e-07 1 CL0022
Cotton_A_00959_CDS 58 262 58 262 PF09778.9 Guanylate_cyc_2 Family 1 212 212 240.4 1.3e-71 1 CL0125
Cotton_A_14020_CDS 76 114 76 118 PF12023.8 DUF3511 Family 1 39 45 80.0 8e-23 1 No_clan
Cotton_A_22997_CDS 98 208 96 208 PF10184.9 DUF2358 Family 3 113 113 130.5 3e-38 1 CL0051
Cotton_A_32426_CDS 9 216 8 219 PF00106.25 adh_short Domain 3 192 195 117.0 7e-34 1 CL0063
Cotton_A_32426_CDS 325 390 324 393 PF08240.12 ADH_N Domain 2 61 109 29.1 6.9e-07 1 CL0296
Cotton_A_32426_CDS 451 582 451 588 PF00107.26 ADH_zinc_N Family 1 124 130 89.6 1.6e-25 1 CL0063
Cotton_A_06959_CDS 52 336 51 337 PF02535.22 Zip Family 2 332 333 159.0 1.7e-46 1 CL0184
Cotton_A_08909_CDS 37 123 37 130 PF01190.17 Pollen_Ole_e_I Family 1 91 99 41.6 1.2e-10 1 CL0287
Cotton_A_11224_CDS 49 115 49 115 PF00226.31 DnaJ Domain 1 63 63 62.3 3.5e-17 1 CL0392
Cotton_A_20349_CDS 36 106 36 107 PF00240.23 ubiquitin Domain 1 71 72 55.0 5.2e-15 1 CL0072
Cotton_A_20349_CDS 112 184 112 185 PF00240.23 ubiquitin Domain 1 71 72 32.9 3.9e-08 1 CL0072
Cotton_A_20349_CDS 277 528 277 529 PF00454.27 PI3_PI4_kinase Family 1 249 250 172.5 1.4e-50 1 CL0016
Cotton_A_12107_CDS 34 127 31 127 PF02678.16 Pirin Family 4 108 108 108.6 1.5e-31 1 CL0029
Cotton_A_12107_CDS 180 283 180 284 PF05726.13 Pirin_C Domain 1 103 104 111.1 2.9e-32 1 CL0029
Cotton_A_17435_CDS 1 97 1 102 PF00854.21 PTR2 Family 297 390 395 49.4 2.9e-13 1 CL0015
Cotton_A_28753_CDS 2 168 1 169 PF04525.12 LOR Domain 26 186 187 136.4 8e-40 1 CL0395
Cotton_A_21551_CDS 53 109 53 109 PF08246.12 Inhibitor_I29 Domain 1 58 58 64.8 6.9e-18 1 No_clan
Cotton_A_21551_CDS 144 360 144 360 PF00112.23 Peptidase_C1 Domain 1 218 218 282.8 2.4e-84 1 CL0125
Cotton_A_21551_CDS 394 440 394 441 PF00396.18 Granulin Family 1 41 42 39.9 3.8e-10 1 No_clan
Cotton_A_02075_CDS 150 290 149 291 PF10607.9 CLTH Domain 2 147 148 91.7 4e-26 1 No_clan
Cotton_A_02075_CDS 328 369 328 369 PF13445.6 zf-RING_UBOX Domain 1 39 39 29.5 5.4e-07 1 CL0229
Cotton_A_01291_CDS 6 103 5 114 PF00168.30 C2 Domain 2 94 103 43.1 3.9e-11 1 CL0154
Cotton_A_28191_CDS 3 95 1 95 PF01459.22 Porin_3 Family 182 270 270 77.5 1.1e-21 1 CL0193
Cotton_A_19387_CDS 321 588 318 588 PF07714.17 Pkinase_Tyr Domain 4 259 259 158.0 2.6e-46 1 CL0016
Cotton_A_12769_CDS 10 118 2 137 PF00790.19 VHS Domain 12 122 141 101.8 2.8e-29 1 CL0009
Cotton_A_12769_CDS 195 268 192 268 PF03127.14 GAT Domain 4 77 77 64.1 1e-17 1 No_clan
Cotton_A_24429_CDS 24 69 23 69 PF13041.6 PPR_2 Repeat 2 47 50 65.8 2.8e-18 1 CL0020
Cotton_A_24429_CDS 94 142 93 142 PF13041.6 PPR_2 Repeat 2 50 50 40.4 2.5e-10 1 CL0020
Cotton_A_24429_CDS 164 212 163 212 PF13041.6 PPR_2 Repeat 2 50 50 54.2 1.2e-14 1 CL0020
Cotton_A_26833_CDS 34 296 34 296 PF04674.12 Phi_1 Family 1 276 276 386.9 4.9e-116 1 No_clan
Cotton_A_15650_CDS 23 113 22 113 PF00428.19 Ribosomal_60s Family 2 88 88 94.2 5.5e-27 1 No_clan
Cotton_A_34619_CDS 144 172 143 173 PF01535.20 PPR Family 2 30 31 20.4 0.00041 1 CL0020
Cotton_A_34619_CDS 179 223 176 224 PF13041.6 PPR_2 Repeat 5 49 50 33.0 5e-08 1 CL0020
Cotton_A_34619_CDS 357 386 356 386 PF01535.20 PPR Family 2 31 31 10.1 0.77 1 CL0020
Cotton_A_07248_CDS 2 250 1 250 PF00069.25 Pkinase Domain 7 264 264 248.3 7.9e-74 1 CL0016
Cotton_A_07248_CDS 279 339 279 339 PF03822.14 NAF Domain 1 54 54 81.8 3e-23 1 CL0573
Cotton_A_14023_CDS 27 107 24 108 PF08700.11 Vps51 Family 4 85 87 36.2 4.9e-09 1 CL0295
Cotton_A_14023_CDS 112 197 111 204 PF04124.12 Dor1 Family 115 200 338 122.8 1.2e-35 1 CL0295
Cotton_A_32145_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 57.7 9.6e-16 1 CL0123
Cotton_A_32145_CDS 67 110 67 112 PF00249.31 Myb_DNA-binding Domain 1 44 46 51.5 8.4e-14 1 CL0123
Cotton_A_24375_CDS 127 217 127 218 PF02362.21 B3 Family 1 100 101 69.1 2.3e-19 1 CL0405
Cotton_A_08730_CDS 82 210 62 212 PF01612.20 DNA_pol_A_exo1 Domain 44 171 176 40.3 2.6e-10 1 CL0219
Cotton_A_23120_CDS 95 432 94 433 PF01546.28 Peptidase_M20 Family 2 206 207 96.5 1.7e-27 1 CL0035
Cotton_A_23120_CDS 203 314 203 319 PF07687.14 M20_dimer Domain 1 104 109 50.4 1.7e-13 1 No_clan
Cotton_A_04324_CDS 106 318 106 318 PF01823.19 MACPF Domain 1 209 209 94.8 7.2e-27 1 CL0293
Cotton_A_31680_CDS 58 225 56 226 PF04755.12 PAP_fibrillin Family 3 197 198 51.5 1.2e-13 1 No_clan
Cotton_A_27869_CDS 35 125 35 132 PF00227.26 Proteasome Domain 48 141 190 77.2 1.1e-21 1 CL0052
Cotton_A_10930_CDS 30 487 29 493 PF00067.22 p450 Domain 2 456 463 317.2 1.7e-94 1 No_clan
Cotton_A_01536_CDS 370 425 370 426 PF05383.17 La Domain 1 58 59 74.8 3.9e-21 1 CL0123
Cotton_A_25342_CDS 166 387 157 388 PF00931.22 NB-ARC Domain 18 251 252 135.7 1.5e-39 1 CL0023
Cotton_A_39191_CDS 108 178 107 184 PF00224.21 PK Family 2 71 348 78.4 4.6e-22 1 CL0151
Cotton_A_39191_CDS 206 476 197 480 PF00224.21 PK Family 66 343 348 294.7 7.9e-88 1 CL0151
Cotton_A_39191_CDS 497 591 494 597 PF02887.16 PK_C Domain 4 102 117 62.6 3.8e-17 1 No_clan
Cotton_A_25302_CDS 10 477 9 477 PF05694.11 SBP56 Family 2 454 454 677.8 6.9e-204 1 CL0186
Cotton_A_01408_CDS 291 397 290 407 PF00168.30 C2 Domain 2 89 103 26.1 7.9e-06 1 CL0154
Cotton_A_01408_CDS 484 580 482 580 PF00168.30 C2 Domain 3 103 103 71.5 5.6e-20 1 CL0154
Cotton_A_01408_CDS 614 710 612 710 PF00168.30 C2 Domain 3 103 103 69.6 2.3e-19 1 CL0154
Cotton_A_18724_CDS 77 159 77 176 PF01453.24 B_lectin Domain 1 89 105 55.2 8.3e-15 1 No_clan
Cotton_A_18724_CDS 515 780 513 782 PF00069.25 Pkinase Domain 4 259 264 160.0 7e-47 1 CL0016
Cotton_A_16108_CDS 20 149 18 162 PF00892.20 EamA Family 3 130 137 49.3 5.2e-13 1 CL0184
Cotton_A_16108_CDS 192 330 191 331 PF00892.20 EamA Family 2 136 137 40.6 2.6e-10 1 CL0184
Cotton_A_06752_CDS 117 179 113 187 PF00069.25 Pkinase Domain 22 82 264 33.2 3.3e-08 1 CL0016
Cotton_A_06752_CDS 188 297 184 297 PF00069.25 Pkinase Domain 140 264 264 66.5 2.4e-18 1 CL0016
Cotton_A_39383_CDS 149 196 147 196 PF00010.26 HLH Domain 3 53 53 47.2 1.5e-12 1 No_clan
Cotton_A_36125_CDS 6 74 6 75 PF00076.22 RRM_1 Domain 1 69 70 43.8 1.7e-11 1 CL0221
Cotton_A_00659_CDS 118 553 118 553 PF12899.7 Glyco_hydro_100 Domain 1 435 435 709.3 1.5e-213 1 CL0059
Cotton_A_35794_CDS 20 42 20 45 PF13202.6 EF-hand_5 Domain 1 23 25 28.1 8.9e-07 1 CL0220
Cotton_A_07355_CDS 246 997 246 1004 PF03552.14 Cellulose_synt Family 1 711 722 1183.5 0 1 CL0110
Cotton_A_05499_CDS 460 610 459 623 PF00069.25 Pkinase Domain 2 149 264 124.5 4.7e-36 1 CL0016
Cotton_A_05499_CDS 688 791 676 791 PF00069.25 Pkinase Domain 154 264 264 74.0 1.2e-20 1 CL0016
Cotton_A_27336_CDS 131 196 130 196 PF00288.26 GHMP_kinases_N Family 2 66 66 41.6 1.1e-10 1 CL0329
Cotton_A_27336_CDS 260 336 257 339 PF08544.13 GHMP_kinases_C Family 3 83 85 40.9 2e-10 1 CL0677
Cotton_A_17258_CDS 18 580 17 581 PF03321.13 GH3 Family 2 526 527 622.7 5.8e-187 1 CL0378
Cotton_A_11587_CDS 4 107 4 107 PF00044.24 Gp_dh_N Domain 1 101 101 114.8 1.9e-33 1 CL0063
Cotton_A_11587_CDS 159 316 159 316 PF02800.20 Gp_dh_C Domain 1 158 158 235.7 1.7e-70 1 CL0139
Cotton_A_13534_CDS 32 111 31 130 PF08268.12 FBA_3 Domain 2 77 128 24.5 2.1e-05 1 CL0162
Cotton_A_03943_CDS 46 380 44 382 PF01094.28 ANF_receptor Family 3 352 354 145.3 2.4e-42 1 CL0144
Cotton_A_03943_CDS 530 780 529 782 PF00060.26 Lig_chan Family 2 147 149 114.2 4.5e-33 1 CL0030
Cotton_A_03943_CDS 601 748 454 749 PF00497.20 SBP_bac_3 Domain 95 224 225 27.4 2e-06 1 CL0177
Cotton_A_04819_CDS 170 364 169 386 PF04577.14 DUF563 Family 2 186 209 59.2 6.3e-16 1 No_clan
Cotton_A_17378_CDS 51 166 43 170 PF02466.19 Tim17 Family 7 110 111 46.8 3.2e-12 1 No_clan
Cotton_A_07086_CDS 5 125 4 125 PF03311.14 Cornichon Family 2 122 122 145.8 7.1e-43 1 No_clan
Cotton_A_18876_CDS 44 129 30 153 PF05175.14 MTS Domain 27 112 169 52.6 3.8e-14 1 CL0063
Cotton_A_05232_CDS 6 169 5 171 PF01217.20 Clat_adaptor_s Domain 2 140 142 64.6 9.1e-18 1 CL0212
Cotton_A_28043_CDS 6 45 5 51 PF00646.33 F-box Domain 2 41 48 28.6 9.1e-07 1 CL0271
Cotton_A_10094_CDS 95 132 95 132 PF17907.1 AWS Domain 2 39 39 52.0 5.2e-14 1 No_clan
Cotton_A_10094_CDS 146 252 146 252 PF00856.28 SET Family 1 169 169 71.5 1e-19 1 No_clan
Cotton_A_07911_CDS 77 326 76 326 PF05153.15 MIOX Family 2 249 249 409.4 5.5e-123 1 CL0237
Cotton_A_36323_CDS 51 198 1 198 PF16653.5 Sacchrp_dh_C Domain 149 265 265 87.0 2.1e-24 1 CL0139
Cotton_A_24100_CDS 33 223 32 226 PF00106.25 adh_short Domain 2 192 195 157.4 3e-46 1 CL0063
Cotton_A_10546_CDS 113 171 113 174 PF01842.25 ACT Domain 1 61 67 32.9 4e-08 1 CL0070
Cotton_A_25461_CDS 35 88 34 88 PF14416.6 PMR5N Domain 2 53 53 54.4 1.2e-14 1 No_clan
Cotton_A_25461_CDS 91 373 89 374 PF13839.6 PC-Esterase Family 3 282 283 272.4 5.7e-81 1 CL0264
Cotton_A_37636_CDS 3 289 3 289 PF13266.6 DUF4057 Family 1 299 299 490.2 2.8e-147 1 No_clan
Cotton_A_16499_CDS 110 129 109 129 PF00612.27 IQ Motif 2 21 21 21.6 0.00011 1 CL0220
Cotton_A_16499_CDS 132 149 131 150 PF00612.27 IQ Motif 2 19 21 18.7 0.00098 1 CL0220
Cotton_A_16499_CDS 274 347 222 363 PF13178.6 DUF4005 Family 16 82 93 42.2 9.9e-11 1 No_clan
Cotton_A_38985_CDS 14 37 13 39 PF00642.24 zf-CCCH Family 2 25 27 29.5 5e-07 1 CL0537
Cotton_A_38985_CDS 82 139 75 140 PF00076.22 RRM_1 Domain 12 69 70 27.3 2.4e-06 1 CL0221
Cotton_A_38985_CDS 150 173 149 174 PF00642.24 zf-CCCH Family 2 26 27 21.7 0.00014 1 CL0537
Cotton_A_18259_CDS 45 104 45 104 PF02704.14 GASA Family 1 60 60 80.8 5.6e-23 1 No_clan
Cotton_A_02806_CDS 56 148 56 152 PF01554.18 MatE Family 1 92 161 69.5 2.5e-19 1 CL0222
Cotton_A_07381_CDS 18 99 17 101 PF00855.17 PWWP Domain 2 94 96 42.6 6.1e-11 1 CL0049
Cotton_A_07381_CDS 891 957 891 958 PF04818.13 CTD_bind Family 1 62 63 32.6 1.1e-07 1 No_clan
Cotton_A_16100_CDS 206 239 206 239 PF00515.28 TPR_1 Repeat 1 34 34 35.7 4.6e-09 1 CL0020
Cotton_A_16100_CDS 241 274 240 274 PF07719.17 TPR_2 Repeat 2 34 34 28.0 1.3e-06 1 CL0020
Cotton_A_37931_CDS 184 279 182 294 PF08030.12 NAD_binding_6 Domain 4 65 156 34.0 2.9e-08 1 CL0091
Cotton_A_38577_CDS 55 251 51 277 PF07714.17 Pkinase_Tyr Domain 5 208 259 113.7 8.4e-33 1 CL0016
Cotton_A_22707_CDS 24 96 22 99 PF02458.15 Transferase Family 3 77 434 32.9 2.8e-08 1 CL0149
Cotton_A_22707_CDS 98 147 95 154 PF02458.15 Transferase Family 136 185 434 51.9 4.7e-14 1 CL0149
Cotton_A_22707_CDS 157 197 147 199 PF02458.15 Transferase Family 230 270 434 23.2 2.4e-05 1 CL0149
Cotton_A_05248_CDS 64 179 64 181 PF01926.23 MMR_HSR1 Family 1 112 114 75.3 3.9e-21 1 CL0023
Cotton_A_05248_CDS 184 289 184 289 PF16897.5 MMR_HSR1_Xtn Family 1 106 106 145.6 4.5e-43 1 No_clan
Cotton_A_05248_CDS 290 366 290 366 PF02824.21 TGS Family 1 60 60 82.7 1.3e-23 1 CL0072
Cotton_A_16051_CDS 11 116 10 118 PF00635.26 Motile_Sperm Domain 2 107 109 99.4 9.7e-29 1 CL0556
Cotton_A_39362_CDS 34 68 33 69 PF01011.21 PQQ Repeat 3 37 38 29.4 4.9e-07 1 CL0186
Cotton_A_39362_CDS 168 248 167 326 PF13360.6 PQQ_2 Domain 2 83 237 25.9 6.6e-06 1 CL0186
Cotton_A_29299_CDS 70 92 69 100 PF12854.7 PPR_1 Repeat 2 24 34 26.5 3.7e-06 1 CL0020
Cotton_A_29299_CDS 108 157 108 157 PF13041.6 PPR_2 Repeat 1 50 50 61.6 6.1e-17 1 CL0020
Cotton_A_29299_CDS 178 227 178 227 PF13041.6 PPR_2 Repeat 1 50 50 69.5 2e-19 1 CL0020
Cotton_A_29299_CDS 249 297 248 297 PF13041.6 PPR_2 Repeat 2 50 50 61.8 5.1e-17 1 CL0020
Cotton_A_29299_CDS 319 366 318 366 PF13041.6 PPR_2 Repeat 2 49 50 62.0 4.3e-17 1 CL0020
Cotton_A_29299_CDS 388 437 388 437 PF13041.6 PPR_2 Repeat 1 50 50 50.5 1.7e-13 1 CL0020
Cotton_A_29299_CDS 459 507 458 507 PF13041.6 PPR_2 Repeat 2 50 50 62.3 3.7e-17 1 CL0020
Cotton_A_29299_CDS 528 573 528 577 PF13041.6 PPR_2 Repeat 1 46 50 30.2 3.7e-07 1 CL0020
Cotton_A_30080_CDS 5 331 3 332 PF01536.16 SAM_decarbox Family 3 354 355 328.3 5.5e-98 1 No_clan
Cotton_A_18128_CDS 65 468 62 469 PF01150.17 GDA1_CD39 Family 5 412 423 348.6 4.1e-104 1 CL0108
Cotton_A_12068_CDS 82 170 82 174 PF01453.24 B_lectin Domain 1 93 105 83.3 1.5e-23 1 No_clan
Cotton_A_12068_CDS 258 318 245 321 PF00954.20 S_locus_glycop Domain 48 108 111 37.2 3.5e-09 1 No_clan
Cotton_A_12068_CDS 360 398 337 403 PF08276.11 PAN_2 Domain 22 61 67 31.0 2.1e-07 1 CL0168
Cotton_A_12068_CDS 524 795 522 797 PF00069.25 Pkinase Domain 4 260 264 174.8 2.1e-51 1 CL0016
Cotton_A_14033_CDS 51 156 50 156 PF00011.21 HSP20 Family 2 102 102 96.8 6.6e-28 1 CL0190
Cotton_A_17540_CDS 70 184 68 188 PF00954.20 S_locus_glycop Domain 4 107 111 34.5 2.3e-08 1 No_clan
Cotton_A_17332_CDS 126 222 126 224 PF08241.12 Methyltransf_11 Domain 1 94 96 74.3 9.4e-21 1 CL0063
Cotton_A_17332_CDS 289 352 288 353 PF08498.10 Sterol_MT_C Family 2 65 66 72.3 3e-20 1 No_clan
Cotton_A_12330_CDS 47 314 43 318 PF07714.17 Pkinase_Tyr Domain 5 255 259 127.1 7.2e-37 1 CL0016
Cotton_A_25559_CDS 22 80 21 86 PF00076.22 RRM_1 Domain 2 63 70 28.1 1.3e-06 1 CL0221
Cotton_A_16476_CDS 23 96 22 96 PF00631.22 G-gamma Domain 2 68 68 62.2 3.4e-17 1 No_clan
Cotton_A_09271_CDS 7 86 1 88 PF01612.20 DNA_pol_A_exo1 Domain 98 171 176 24.4 1.9e-05 1 CL0219
Cotton_A_27661_CDS 116 158 115 158 PF13639.6 zf-RING_2 Domain 2 44 44 51.8 7.6e-14 1 CL0229
Cotton_A_35560_CDS 28 114 28 120 PF00411.19 Ribosomal_S11 Family 1 87 110 123.7 4e-36 1 CL0267
Cotton_A_38710_CDS 43 131 40 134 PF12796.7 Ank_2 Repeat 1 79 83 48.0 1.4e-12 1 CL0465
Cotton_A_38710_CDS 169 408 157 408 PF07714.17 Pkinase_Tyr Domain 23 259 259 184.7 1.8e-54 1 CL0016
Cotton_A_36174_CDS 88 322 88 323 PF02485.21 Branch Family 1 246 247 219.7 4.1e-65 1 CL0110
Cotton_A_00759_CDS 690 1167 673 1168 PF05794.13 Tcp11 Family 12 441 442 274.3 2.1e-81 1 No_clan
Cotton_A_31850_CDS 118 275 114 275 PF01789.16 PsbP Domain 12 156 156 48.8 8e-13 1 CL0619
Cotton_A_32366_CDS 377 644 376 655 PF01207.17 Dus Family 2 270 310 169.9 6.6e-50 1 CL0036
Cotton_A_07973_CDS 15 152 10 154 PF00892.20 EamA Family 6 135 137 49.2 5.9e-13 1 CL0184
Cotton_A_07973_CDS 200 337 199 338 PF00892.20 EamA Family 2 136 137 58.2 9.7e-16 1 CL0184
Cotton_A_32675_CDS 1 114 1 116 PF08284.11 RVP_2 Domain 21 134 136 99.6 1.1e-28 1 CL0129
Cotton_A_32675_CDS 122 272 113 273 PF00078.27 RVT_1 Family 15 221 222 93.4 1.4e-26 1 CL0027
Cotton_A_32675_CDS 336 390 336 393 PF17919.1 RT_RNaseH_2 Domain 1 60 100 53.2 2.3e-14 1 CL0219
Cotton_A_32675_CDS 500 551 498 551 PF17921.1 Integrase_H2C2 Domain 3 52 58 57.5 1.1e-15 1 CL0361
Cotton_A_04343_CDS 9 128 6 143 PF00790.19 VHS Domain 4 122 141 110.6 5.2e-32 1 CL0009
Cotton_A_04343_CDS 218 289 215 291 PF03127.14 GAT Domain 4 75 77 64.8 6.5e-18 1 No_clan
Cotton_A_30965_CDS 129 195 128 195 PF00013.29 KH_1 Domain 2 66 66 55.7 3.1e-15 1 CL0007
Cotton_A_30965_CDS 221 287 220 288 PF00013.29 KH_1 Domain 2 65 66 65.9 2.1e-18 1 CL0007
Cotton_A_30965_CDS 752 856 750 857 PF04718.15 ATP-synt_G Family 3 99 100 71.0 1.2e-19 1 No_clan
Cotton_A_37190_CDS 70 177 66 195 PF12146.8 Hydrolase_4 Family 5 114 239 38.5 7.2e-10 1 CL0028
Cotton_A_35787_CDS 3 74 3 74 PF00240.23 ubiquitin Domain 1 72 72 115.4 7.1e-34 1 CL0072
Cotton_A_35787_CDS 79 150 79 150 PF00240.23 ubiquitin Domain 1 72 72 115.4 7.1e-34 1 CL0072
Cotton_A_35787_CDS 155 226 155 226 PF00240.23 ubiquitin Domain 1 72 72 115.4 7.1e-34 1 CL0072
Cotton_A_07215_CDS 5 69 5 70 PF18052.1 Rx_N Domain 1 59 93 40.8 2e-10 1 No_clan
Cotton_A_01462_CDS 139 375 137 375 PF12146.8 Hydrolase_4 Family 3 239 239 238.6 5.5e-71 1 CL0028
Cotton_A_25605_CDS 37 196 37 197 PF01554.18 MatE Family 1 160 161 109.7 1.1e-31 1 CL0222
Cotton_A_25605_CDS 258 420 258 421 PF01554.18 MatE Family 1 160 161 101.5 3.6e-29 1 CL0222
Cotton_A_04254_CDS 230 505 228 507 PF00069.25 Pkinase Domain 3 260 264 154.8 2.6e-45 1 CL0016
Cotton_A_05793_CDS 34 488 34 489 PF00450.22 Peptidase_S10 Domain 1 418 419 455.0 3.4e-136 1 CL0028
Cotton_A_23542_CDS 145 194 145 194 PF00847.20 AP2 Domain 1 53 54 35.8 7.2e-09 1 CL0081
Cotton_A_23542_CDS 237 287 237 288 PF00847.20 AP2 Domain 1 53 54 37.5 2e-09 1 CL0081
Cotton_A_21713_CDS 2 101 2 104 PF03195.14 LOB Family 1 95 99 82.9 1.9e-23 1 No_clan
Cotton_A_06359_CDS 59 300 54 302 PF00141.23 peroxidase Domain 6 227 229 247.8 1e-73 1 CL0617
Cotton_A_39841_CDS 277 501 273 526 PF00928.21 Adap_comp_sub Family 7 236 264 108.4 3.9e-31 1 CL0448
Cotton_A_32883_CDS 47 167 47 167 PF17808.1 fn3_PAP Domain 1 118 118 144.1 1.9e-42 1 CL0159
Cotton_A_32883_CDS 176 278 171 279 PF16656.5 Pur_ac_phosph_N Domain 6 93 94 32.7 8.5e-08 1 CL0159
Cotton_A_32883_CDS 290 505 289 505 PF00149.28 Metallophos Domain 2 204 204 68.2 1.3e-18 1 CL0163
Cotton_A_32883_CDS 530 589 530 589 PF14008.6 Metallophos_C Domain 1 63 63 55.4 8.6e-15 1 No_clan
Cotton_A_37792_CDS 28 171 26 171 PF04043.15 PMEI Domain 5 154 154 89.0 3.8e-25 1 No_clan
Cotton_A_37792_CDS 215 508 215 508 PF01095.19 Pectinesterase Family 1 298 298 463.4 2e-139 1 CL0268
Cotton_A_20259_CDS 202 352 201 352 PF02182.17 SAD_SRA Domain 2 157 157 169.0 6e-50 1 CL0178
Cotton_A_20259_CDS 381 479 380 479 PF05033.16 Pre-SET Family 2 109 109 69.0 4.9e-19 1 No_clan
Cotton_A_20259_CDS 498 633 498 633 PF00856.28 SET Family 1 169 169 75.2 7.5e-21 1 No_clan
Cotton_A_16510_CDS 23 118 21 118 PF14368.6 LTP_2 Family 2 97 97 59.4 2.8e-16 1 CL0482
Cotton_A_01610_CDS 4 176 3 177 PF00025.21 Arf Domain 2 174 175 235.4 2.6e-70 1 CL0023
Cotton_A_19857_CDS 184 279 180 313 PF13589.6 HATPase_c_3 Domain 5 98 137 61.6 6.9e-17 1 CL0025
Cotton_A_19857_CDS 414 558 414 558 PF17942.1 Morc6_S5 Family 1 139 139 195.1 5e-58 1 CL0329
Cotton_A_03417_CDS 195 225 195 225 PF01535.20 PPR Family 1 31 31 30.4 2.7e-07 1 CL0020
Cotton_A_03417_CDS 227 276 227 276 PF13041.6 PPR_2 Repeat 1 50 50 66.9 1.3e-18 1 CL0020
Cotton_A_03417_CDS 295 326 293 326 PF12854.7 PPR_1 Repeat 3 34 34 46.0 3e-12 1 CL0020
Cotton_A_03417_CDS 332 381 332 381 PF13041.6 PPR_2 Repeat 1 50 50 59.4 2.8e-16 1 CL0020
Cotton_A_03417_CDS 402 451 402 451 PF13041.6 PPR_2 Repeat 1 50 50 54.6 9e-15 1 CL0020
Cotton_A_03417_CDS 473 521 472 521 PF13041.6 PPR_2 Repeat 2 50 50 53.9 1.5e-14 1 CL0020
Cotton_A_03417_CDS 542 591 542 591 PF13041.6 PPR_2 Repeat 1 50 50 70.7 8.6e-20 1 CL0020
Cotton_A_03417_CDS 613 660 612 661 PF13041.6 PPR_2 Repeat 2 49 50 59.2 3.3e-16 1 CL0020
Cotton_A_33913_CDS 6 142 4 142 PF00588.19 SpoU_methylase Family 3 142 142 101.0 6e-29 1 CL0098
Cotton_A_03183_CDS 103 399 103 400 PF02383.18 Syja_N Family 1 319 320 258.7 7.8e-77 1 CL0031
Cotton_A_15644_CDS 107 177 107 177 PF00076.22 RRM_1 Domain 1 70 70 79.2 1.5e-22 1 CL0221
Cotton_A_15644_CDS 187 253 187 258 PF00076.22 RRM_1 Domain 1 64 70 38.1 1e-09 1 CL0221
Cotton_A_15644_CDS 282 349 282 350 PF00076.22 RRM_1 Domain 1 69 70 47.6 1.1e-12 1 CL0221
Cotton_A_34250_CDS 57 89 56 95 PF05042.13 Caleosin Family 2 34 170 35.4 9.5e-09 1 CL0220
Cotton_A_27567_CDS 246 290 242 297 PF00170.21 bZIP_1 Family 5 49 64 50.4 1.8e-13 1 CL0018
Cotton_A_10807_CDS 52 123 49 123 PF00111.27 Fer2 Domain 4 78 78 67.2 8.8e-19 1 CL0486
Cotton_A_22646_CDS 14 118 14 119 PF15699.5 NPR1_interact Family 1 108 109 68.5 6.7e-19 1 No_clan
Cotton_A_14042_CDS 16 220 16 225 PF00106.25 adh_short Domain 1 190 195 160.7 2.9e-47 1 CL0063
Cotton_A_34370_CDS 44 207 44 207 PF04833.15 COBRA Family 1 165 165 223.7 1.2e-66 1 No_clan
Cotton_A_13538_CDS 44 116 10 116 PF14368.6 LTP_2 Family 23 97 97 40.5 2.2e-10 1 CL0482
Cotton_A_37546_CDS 2 123 1 124 PF00125.24 Histone Domain 2 130 131 82.6 3e-23 1 CL0012
Cotton_A_02141_CDS 21 81 21 81 PF06972.11 DUF1296 Family 1 60 60 105.8 9.2e-31 1 CL0214
Cotton_A_22462_CDS 64 124 54 124 PF01985.21 CRS1_YhbY Domain 24 84 84 34.1 2.3e-08 1 No_clan
Cotton_A_20163_CDS 114 254 113 254 PF04116.13 FA_hydroxylase Family 2 133 133 67.7 1.2e-18 1 No_clan
Cotton_A_20163_CDS 436 606 436 606 PF12076.8 Wax2_C Domain 1 164 164 215.9 2.6e-64 1 No_clan
Cotton_A_09710_CDS 16 140 6 140 PF08613.11 Cyclin Family 35 161 161 127.8 5e-37 1 CL0065
Cotton_A_34603_CDS 36 79 34 79 PF07765.12 KIP1 Family 22 74 74 25.7 9.3e-06 1 No_clan
Cotton_A_25105_CDS 5 90 5 107 PF18052.1 Rx_N Domain 1 86 93 73.8 1e-20 1 No_clan
Cotton_A_25105_CDS 167 418 164 419 PF00931.22 NB-ARC Domain 4 251 252 220.6 1.9e-65 1 CL0023
Cotton_A_25330_CDS 109 255 98 262 PF00931.22 NB-ARC Domain 83 234 252 86.8 1.3e-24 1 CL0023
Cotton_A_38043_CDS 186 549 186 549 PF11904.8 GPCR_chapero_1 Domain 1 307 307 329.1 3e-98 1 No_clan
Cotton_A_28238_CDS 7 56 6 57 PF00847.20 AP2 Domain 2 53 54 43.5 2.8e-11 1 CL0081
Cotton_A_01648_CDS 32 88 32 92 PF04193.14 PQ-loop Repeat 1 57 61 71.0 5e-20 1 CL0141
Cotton_A_01648_CDS 235 292 234 294 PF04193.14 PQ-loop Repeat 2 59 61 60.0 1.4e-16 1 CL0141
Cotton_A_21089_CDS 109 214 109 216 PF12796.7 Ank_2 Repeat 1 81 83 40.4 3.3e-10 1 CL0465
Cotton_A_21089_CDS 267 361 262 375 PF13962.6 PGG Domain 6 107 116 44.4 1.2e-11 1 No_clan
Cotton_A_25589_CDS 12 191 12 191 PF13419.6 HAD_2 Family 1 178 178 97.2 1.2e-27 1 CL0137
Cotton_A_25589_CDS 235 360 234 361 PF01687.17 Flavokinase Domain 3 110 111 109.9 7.9e-32 1 No_clan
Cotton_A_05283_CDS 44 103 35 104 PF00348.17 polyprenyl_synt Domain 191 255 256 39.1 4.3e-10 1 CL0613
Cotton_A_21107_CDS 131 180 130 181 PF00847.20 AP2 Domain 2 53 54 50.5 1.8e-13 1 CL0081
Cotton_A_14554_CDS 33 115 22 123 PF00383.23 dCMP_cyt_deam_1 Family 13 93 101 39.1 5.2e-10 1 CL0109
Cotton_A_14554_CDS 149 278 149 278 PF08211.12 dCMP_cyt_deam_2 Family 1 133 133 173.2 2.7e-51 1 CL0109
Cotton_A_26072_CDS 111 160 99 186 PF05175.14 MTS Domain 32 81 169 24.3 1.9e-05 1 CL0063
Cotton_A_26072_CDS 720 1065 696 1068 PF00155.21 Aminotran_1_2 Domain 48 360 363 54.6 9.6e-15 1 CL0061
Cotton_A_32141_CDS 149 191 148 191 PF13639.6 zf-RING_2 Domain 2 44 44 51.5 9e-14 1 CL0229
Cotton_A_15075_CDS 106 381 93 384 PF10250.9 O-FucT Family 15 333 336 78.4 8e-22 1 CL0113
Cotton_A_10522_CDS 12 70 3 70 PF03946.14 Ribosomal_L11_N Domain 7 65 65 75.9 1.5e-21 1 No_clan
Cotton_A_10522_CDS 75 144 74 144 PF00298.19 Ribosomal_L11 Domain 2 70 70 68.9 4.1e-19 1 No_clan
Cotton_A_35312_CDS 9 76 8 76 PF00690.26 Cation_ATPase_N Domain 2 69 69 67.3 7.1e-19 1 No_clan
Cotton_A_34556_CDS 75 131 74 132 PF02701.15 zf-Dof Family 2 58 59 111.8 1.2e-32 1 No_clan
Cotton_A_36536_CDS 146 303 91 303 PF03087.14 DUF241 Family 84 233 234 27.4 2.7e-06 1 CL0133
Cotton_A_07961_CDS 31 211 30 211 PF01301.19 Glyco_hydro_35 Domain 2 183 316 237.6 2.5e-70 1 CL0058
Cotton_A_32699_CDS 87 137 87 165 PF02416.16 MttA_Hcf106 Family 1 51 53 83.2 5.9e-24 1 No_clan
Cotton_A_20099_CDS 473 514 471 514 PF13639.6 zf-RING_2 Domain 3 44 44 43.4 3.1e-11 1 CL0229
Cotton_A_31087_CDS 7 41 7 53 PF12937.7 F-box-like Domain 1 34 48 25.6 8.2e-06 1 CL0271
Cotton_A_31087_CDS 129 150 128 150 PF13516.6 LRR_6 Repeat 3 24 24 12.0 0.17 1 CL0022
Cotton_A_00838_CDS 7 223 7 238 PF00083.24 Sugar_tr Family 1 229 452 170.4 5.9e-50 1 CL0015
Cotton_A_00838_CDS 502 726 475 726 PF00083.24 Sugar_tr Family 238 452 452 142.4 1.9e-41 1 CL0015
Cotton_A_31400_CDS 335 495 335 496 PF13177.6 DNA_pol3_delta2 Domain 1 162 163 109.1 1.8e-31 1 CL0023
Cotton_A_31400_CDS 548 610 548 677 PF12169.8 DNA_pol3_gamma3 Family 1 63 143 33.3 4e-08 1 CL0604
Cotton_A_15837_CDS 2 115 1 116 PF07732.15 Cu-oxidase_3 Domain 3 118 119 145.1 8.6e-43 1 CL0026
Cotton_A_15837_CDS 129 277 126 278 PF00394.22 Cu-oxidase Domain 4 158 159 129.9 9.1e-38 1 CL0026
Cotton_A_15837_CDS 389 521 388 523 PF07731.14 Cu-oxidase_2 Domain 2 135 137 138.8 9.1e-41 1 CL0026
Cotton_A_34292_CDS 12 104 2 108 PF08969.11 USP8_dimer Domain 17 111 115 38.5 1.1e-09 1 No_clan
Cotton_A_34292_CDS 323 428 320 429 PF01398.21 JAB Family 4 117 118 60.8 1.2e-16 1 CL0366
Cotton_A_23247_CDS 78 144 76 149 PF02617.17 ClpS Family 3 68 80 65.8 2.1e-18 1 No_clan
Cotton_A_30916_CDS 166 307 164 311 PF00004.29 AAA Domain 3 128 132 56.1 5.1e-15 1 CL0023
Cotton_A_10324_CDS 22 144 16 160 PF10604.9 Polyketide_cyc2 Family 13 127 143 70.2 2.2e-19 1 CL0209
Cotton_A_15642_CDS 3 215 1 215 PF00069.25 Pkinase Domain 43 264 264 210.3 3.3e-62 1 CL0016
Cotton_A_15642_CDS 254 314 254 314 PF03822.14 NAF Domain 1 54 54 70.3 1.1e-19 1 CL0573
Cotton_A_12873_CDS 25 103 25 104 PF01282.19 Ribosomal_S24e Family 1 78 79 124.3 1.4e-36 1 No_clan
Cotton_A_16341_CDS 121 196 120 197 PF02470.20 MlaD Family 2 80 81 54.3 1.3e-14 1 No_clan
Cotton_A_24713_CDS 71 123 71 123 PF00010.26 HLH Domain 1 53 53 30.2 3.2e-07 1 No_clan
Cotton_A_27386_CDS 76 292 76 294 PF02167.15 Cytochrom_C1 Family 1 217 219 322.1 1.8e-96 1 CL0318
Cotton_A_22757_CDS 51 179 48 180 PF00134.23 Cyclin_N Domain 4 126 127 92.7 1.4e-26 1 CL0065
Cotton_A_22757_CDS 182 272 182 276 PF02984.19 Cyclin_C Domain 1 87 119 25.8 8.9e-06 1 CL0065
Cotton_A_11528_CDS 2 43 1 43 PF00249.31 Myb_DNA-binding Domain 7 46 46 42.6 5e-11 1 CL0123
Cotton_A_11528_CDS 49 92 49 104 PF00249.31 Myb_DNA-binding Domain 1 44 46 56.6 2.1e-15 1 CL0123
Cotton_A_15851_CDS 396 696 394 696 PF00069.25 Pkinase Domain 3 264 264 172.9 7.9e-51 1 CL0016
Cotton_A_05341_CDS 53 380 53 381 PF13968.6 DUF4220 Family 1 347 347 257.6 2.1e-76 1 No_clan
Cotton_A_05341_CDS 599 650 597 650 PF04578.13 DUF594 Family 4 55 55 72.1 2e-20 1 No_clan
Cotton_A_04505_CDS 96 153 96 153 PF03106.15 WRKY Domain 1 59 59 86.9 7.8e-25 1 CL0274
Cotton_A_34261_CDS 79 126 77 127 PF00010.26 HLH Domain 4 52 53 38.4 8.7e-10 1 No_clan
Cotton_A_35493_CDS 79 133 67 134 PF00078.27 RVT_1 Family 122 180 222 41.7 9e-11 1 CL0027
Cotton_A_04013_CDS 34 289 31 289 PF00069.25 Pkinase Domain 4 264 264 240.4 2e-71 1 CL0016
Cotton_A_04013_CDS 337 397 329 398 PF13499.6 EF-hand_7 Domain 4 70 71 47.1 2.4e-12 1 CL0220
Cotton_A_04013_CDS 408 468 406 468 PF13499.6 EF-hand_7 Domain 3 71 71 46.1 5e-12 1 CL0220
Cotton_A_26370_CDS 16 72 13 75 PF00170.21 bZIP_1 Family 5 61 64 45.5 5.8e-12 1 CL0018
Cotton_A_03666_CDS 430 482 430 483 PF08766.11 DEK_C Domain 1 53 54 47.5 1.2e-12 1 No_clan
Cotton_A_12630_CDS 72 244 71 244 PF06351.11 Allene_ox_cyc Family 2 175 175 309.0 8.1e-93 1 CL0650
Cotton_A_26043_CDS 20 98 9 107 PF02362.21 B3 Family 14 91 101 30.5 2.5e-07 1 CL0405
Cotton_A_21819_CDS 149 260 147 260 PF14288.6 FKS1_dom1 Family 3 129 129 124.3 3.6e-36 1 No_clan
Cotton_A_21819_CDS 864 1659 863 1666 PF02364.15 Glucan_synthase Family 2 812 819 885.0 4.9e-266 1 CL0111
Cotton_A_15646_CDS 16 143 16 143 PF02365.15 NAM Family 1 126 126 122.0 2.7e-35 1 No_clan
Cotton_A_16622_CDS 81 418 81 418 PF00225.23 Kinesin Domain 1 333 333 314.2 8.5e-94 1 CL0023
Cotton_A_16622_CDS 672 707 668 708 PF00514.23 Arm Repeat 6 40 41 23.2 5e-05 1 CL0020
Cotton_A_29242_CDS 89 236 88 237 PF00931.22 NB-ARC Domain 2 156 252 120.9 5.1e-35 1 CL0023
Cotton_A_14603_CDS 190 860 190 860 PF00063.21 Myosin_head Domain 1 677 677 802.3 3.1e-241 1 CL0023
Cotton_A_14603_CDS 899 917 898 918 PF00612.27 IQ Motif 2 20 21 12.1 0.13 1 CL0220
Cotton_A_14603_CDS 924 944 924 944 PF00612.27 IQ Motif 1 21 21 15.4 0.012 1 CL0220
Cotton_A_14603_CDS 948 964 947 967 PF00612.27 IQ Motif 2 18 21 19.3 0.00064 1 CL0220
Cotton_A_02839_CDS 3 113 2 113 PF03966.16 Trm112p Domain 2 68 68 63.7 1.7e-17 1 CL0167
Cotton_A_22505_CDS 42 105 12 107 PF01775.17 Ribosomal_L18A Domain 56 119 121 91.3 4.7e-26 1 No_clan
Cotton_A_23544_CDS 20 68 18 69 PF00847.20 AP2 Domain 3 53 54 41.0 1.7e-10 1 CL0081
Cotton_A_21760_CDS 293 336 292 337 PF08621.10 RPAP1_N Family 2 45 46 57.8 6.7e-16 1 No_clan
Cotton_A_21760_CDS 416 489 416 490 PF08620.10 RPAP1_C Family 1 66 67 52.4 4.1e-14 1 No_clan
Cotton_A_29520_CDS 4 298 4 298 PF01026.21 TatD_DNase Domain 1 255 255 242.5 4.4e-72 1 CL0034
Cotton_A_21888_CDS 29 139 26 139 PF04398.12 DUF538 Family 4 112 112 114.3 3.8e-33 1 No_clan
Cotton_A_32434_CDS 132 181 131 182 PF00847.20 AP2 Domain 2 53 54 49.9 2.8e-13 1 CL0081
Cotton_A_04035_CDS 168 240 129 240 PF00583.25 Acetyltransf_1 Family 39 117 117 27.3 3.3e-06 1 CL0257
Cotton_A_35467_CDS 49 181 49 182 PF03188.16 Cytochrom_B561 Family 1 136 137 154.6 1.6e-45 1 CL0328
Cotton_A_08816_CDS 21 147 21 147 PF02365.15 NAM Family 1 126 126 128.2 3.4e-37 1 No_clan
Cotton_A_20031_CDS 26 261 23 261 PF13561.6 adh_short_C2 Domain 3 234 234 170.3 4.7e-50 1 CL0063
Cotton_A_11368_CDS 32 319 31 319 PF16363.5 GDP_Man_Dehyd Domain 30 332 332 394.3 5.1e-118 1 CL0063
Cotton_A_26013_CDS 24 326 8 327 PF06113.12 BRE Family 26 319 320 129.8 9.5e-38 1 No_clan
Cotton_A_06788_CDS 216 272 216 272 PF03106.15 WRKY Domain 1 59 59 86.1 1.4e-24 1 CL0274
Cotton_A_06788_CDS 376 433 376 433 PF03106.15 WRKY Domain 1 59 59 89.9 9.1e-26 1 CL0274
Cotton_A_23407_CDS 43 83 42 83 PF08263.12 LRRNT_2 Family 2 41 41 39.4 5.5e-10 1 No_clan
Cotton_A_23407_CDS 110 149 103 149 PF13855.6 LRR_8 Repeat 22 61 61 27.8 1.5e-06 1 CL0022
Cotton_A_30621_CDS 3 229 2 229 PF03040.14 CemA Family 2 229 229 253.9 1.7e-75 1 No_clan
Cotton_A_05132_CDS 11 51 10 56 PF00319.18 SRF-TF Domain 2 42 48 59.7 1.4e-16 1 No_clan
Cotton_A_27530_CDS 11 408 9 409 PF03547.18 Mem_trans Family 3 386 387 229.7 3.7e-68 1 CL0064
Cotton_A_11021_CDS 8 30 8 30 PF10584.9 Proteasome_A_N Domain 1 23 23 48.4 5.1e-13 1 CL0052
Cotton_A_11021_CDS 32 216 31 216 PF00227.26 Proteasome Domain 2 190 190 172.6 6.1e-51 1 CL0052
Cotton_A_30596_CDS 54 246 54 247 PF14543.6 TAXi_N Domain 1 177 178 109.3 2.5e-31 1 CL0129
Cotton_A_30596_CDS 277 447 276 448 PF14541.6 TAXi_C Domain 2 160 161 108.8 2.2e-31 1 CL0129
Cotton_A_19993_CDS 54 212 54 212 PF01652.18 IF4E Domain 1 159 159 182.1 6e-54 1 CL0625
Cotton_A_10518_CDS 111 212 111 213 PF02362.21 B3 Family 1 100 101 72.9 1.5e-20 1 CL0405
Cotton_A_10518_CDS 252 328 245 329 PF06507.13 Auxin_resp Family 7 82 83 106.2 7.9e-31 1 No_clan
Cotton_A_00498_CDS 6 336 6 337 PF16363.5 GDP_Man_Dehyd Domain 1 331 332 214.1 3.3e-63 1 CL0063
Cotton_A_26966_CDS 133 256 133 257 PF07227.11 PHD_Oberon Family 1 129 130 141.6 1.3e-41 1 CL0390
Cotton_A_26966_CDS 350 464 350 467 PF16312.5 Oberon_cc Family 1 115 129 159.4 4e-47 1 No_clan
Cotton_A_15633_CDS 22 95 18 96 PF16845.5 SQAPI Domain 8 82 83 71.9 4.1e-20 1 CL0121
Cotton_A_36086_CDS 60 191 58 191 PF02469.22 Fasciclin Domain 3 128 128 81.4 6.3e-23 1 No_clan
Cotton_A_18598_CDS 10 71 9 73 PF13499.6 EF-hand_7 Domain 2 69 71 40.8 2.2e-10 1 CL0220
Cotton_A_18598_CDS 85 147 84 148 PF13499.6 EF-hand_7 Domain 2 70 71 54.8 9.9e-15 1 CL0220
Cotton_A_28001_CDS 15 87 2 87 PF11708.8 Slu7 Domain 92 166 269 90.6 1.4e-25 1 No_clan
Cotton_A_36749_CDS 204 402 195 402 PF01397.21 Terpene_synth Domain 11 192 192 141.7 2.2e-41 1 No_clan
Cotton_A_36749_CDS 447 671 447 685 PF03936.16 Terpene_synth_C Domain 1 229 267 190.4 3.7e-56 1 CL0613
Cotton_A_11649_CDS 13 199 12 200 PF00117.28 GATase Domain 2 189 190 110.4 9.1e-32 1 CL0014
Cotton_A_11649_CDS 443 533 442 533 PF00958.22 GMP_synt_C Domain 2 92 92 138.0 8e-41 1 No_clan
Cotton_A_26376_CDS 55 307 55 308 PF09459.10 EB_dh Domain 1 248 249 92.3 4.6e-26 1 CL0159
Cotton_A_29985_CDS 36 351 36 351 PF00225.23 Kinesin Domain 1 333 333 329.3 2.1e-98 1 CL0023
Cotton_A_29985_CDS 777 909 774 910 PF11995.8 DUF3490 Family 32 160 161 165.9 6e-49 1 No_clan
Cotton_A_33923_CDS 68 173 68 183 PF14226.6 DIOX_N Family 1 104 118 68.1 1.1e-18 1 CL0029
Cotton_A_33923_CDS 227 318 224 319 PF03171.20 2OG-FeII_Oxy Domain 8 100 101 85.9 2.2e-24 1 CL0029
Cotton_A_01038_CDS 22 86 22 88 PF05641.12 Agenet Domain 1 61 61 31.8 1.5e-07 1 CL0049
Cotton_A_29169_CDS 156 201 156 201 PF03107.16 C1_2 Domain 1 47 47 34.7 1.6e-08 1 CL0006
Cotton_A_29169_CDS 216 262 215 262 PF03107.16 C1_2 Domain 2 47 47 31.6 1.5e-07 1 CL0006
Cotton_A_29169_CDS 271 315 271 315 PF03107.16 C1_2 Domain 1 47 47 27.1 3.9e-06 1 CL0006
Cotton_A_29169_CDS 326 367 325 368 PF03107.16 C1_2 Domain 2 46 47 33.1 5.3e-08 1 CL0006
Cotton_A_29169_CDS 475 520 474 520 PF03107.16 C1_2 Domain 2 47 47 33.9 2.8e-08 1 CL0006
Cotton_A_29169_CDS 581 621 580 621 PF03107.16 C1_2 Domain 2 47 47 30.8 2.7e-07 1 CL0006
Cotton_A_28845_CDS 66 122 66 122 PF08246.12 Inhibitor_I29 Domain 1 58 58 39.7 4.8e-10 1 No_clan
Cotton_A_28845_CDS 155 378 155 380 PF00112.23 Peptidase_C1 Domain 1 216 218 239.6 4e-71 1 CL0125
Cotton_A_24186_CDS 50 89 49 93 PF00643.24 zf-B_box Domain 2 37 42 25.1 1.5e-05 1 No_clan
Cotton_A_05611_CDS 219 256 218 256 PF00400.32 WD40 Repeat 2 38 38 14.2 0.061 1 CL0186
Cotton_A_38729_CDS 22 71 10 72 PF18052.1 Rx_N Domain 2 51 93 33.1 5.1e-08 1 No_clan
Cotton_A_14828_CDS 7 73 5 74 PF01423.22 LSM Domain 3 66 67 63.8 8.4e-18 1 CL0527
Cotton_A_06137_CDS 159 201 158 201 PF13639.6 zf-RING_2 Domain 2 44 44 52.6 4.3e-14 1 CL0229
Cotton_A_06431_CDS 146 284 145 287 PF10607.9 CLTH Domain 2 145 148 114.9 2.8e-33 1 No_clan
Cotton_A_06431_CDS 324 365 324 365 PF13445.6 zf-RING_UBOX Domain 1 39 39 36.1 4.8e-09 1 CL0229
Cotton_A_07839_CDS 1 78 1 79 PF00085.20 Thioredoxin Domain 22 101 103 72.3 2.6e-20 1 CL0172
Cotton_A_36065_CDS 20 275 20 275 PF00069.25 Pkinase Domain 1 264 264 246.5 2.9e-73 1 CL0016
Cotton_A_36065_CDS 326 386 326 386 PF03822.14 NAF Domain 1 54 54 71.9 3.6e-20 1 CL0573
Cotton_A_00704_CDS 114 263 106 268 PF01554.18 MatE Family 9 156 161 47.7 1.3e-12 1 CL0222
Cotton_A_00704_CDS 326 485 326 488 PF01554.18 MatE Family 1 158 161 25.8 7.1e-06 1 CL0222
Cotton_A_03138_CDS 206 240 206 241 PF05553.11 DUF761 Family 1 35 36 54.6 5.7e-15 1 No_clan
Cotton_A_07180_CDS 15 102 8 102 PF14368.6 LTP_2 Family 5 97 97 51.4 8.7e-14 1 CL0482
Cotton_A_12246_CDS 128 412 128 412 PF05007.13 Mannosyl_trans Family 1 259 259 246.6 3.7e-73 1 CL0111
Cotton_A_13651_CDS 9 94 9 110 PF14226.6 DIOX_N Family 1 84 118 43.2 5.9e-11 1 CL0029
Cotton_A_04514_CDS 34 147 33 149 PF07732.15 Cu-oxidase_3 Domain 2 117 119 131.4 1.6e-38 1 CL0026
Cotton_A_04514_CDS 161 309 159 310 PF00394.22 Cu-oxidase Domain 3 158 159 115.6 2.2e-33 1 CL0026
Cotton_A_04514_CDS 413 545 412 547 PF07731.14 Cu-oxidase_2 Domain 2 135 137 121.6 1.9e-35 1 CL0026
Cotton_A_33122_CDS 89 494 79 509 PF00067.22 p450 Domain 31 446 463 246.2 5.9e-73 1 No_clan
Cotton_A_33122_CDS 507 623 505 644 PF00067.22 p450 Domain 324 439 463 92.8 1.9e-26 1 No_clan
Cotton_A_09679_CDS 100 177 93 178 PF00439.25 Bromodomain Domain 8 83 84 49.7 2.9e-13 1 No_clan
Cotton_A_36955_CDS 86 113 85 115 PF01535.20 PPR Family 2 29 31 9.8 1 1 CL0020
Cotton_A_36955_CDS 116 146 116 146 PF01535.20 PPR Family 1 31 31 28.1 1.4e-06 1 CL0020
Cotton_A_36955_CDS 188 213 188 215 PF01535.20 PPR Family 4 29 31 12.8 0.11 1 CL0020
Cotton_A_36955_CDS 216 243 216 244 PF01535.20 PPR Family 1 28 31 23.9 3.1e-05 1 CL0020
Cotton_A_36955_CDS 289 312 287 313 PF01535.20 PPR Family 4 27 31 13.7 0.056 1 CL0020
Cotton_A_36955_CDS 315 361 314 363 PF13041.6 PPR_2 Repeat 2 48 50 38.5 1e-09 1 CL0020
Cotton_A_36955_CDS 486 503 483 507 PF01535.20 PPR Family 4 21 31 9.6 1.2 1 CL0020
Cotton_A_36955_CDS 544 591 543 592 PF13041.6 PPR_2 Repeat 2 49 50 41.4 1.2e-10 1 CL0020
Cotton_A_36955_CDS 618 646 617 647 PF01535.20 PPR Family 2 30 31 20.4 0.00043 1 CL0020
Cotton_A_36955_CDS 648 678 648 678 PF01535.20 PPR Family 1 31 31 29.9 3.7e-07 1 CL0020
Cotton_A_14768_CDS 194 487 133 488 PF00176.23 SNF2_N Family 45 349 350 226.1 5.1e-67 1 CL0023
Cotton_A_14768_CDS 511 623 509 623 PF00271.31 Helicase_C Family 3 111 111 73.6 1.5e-20 1 CL0023
Cotton_A_00078_CDS 209 354 209 359 PF00179.26 UQ_con Domain 1 134 140 85.2 3.1e-24 1 CL0208
Cotton_A_37410_CDS 83 480 48 490 PF00067.22 p450 Domain 45 447 463 194.4 2.9e-57 1 No_clan
Cotton_A_05983_CDS 169 220 169 221 PF04434.17 SWIM Domain 1 39 40 36.8 2.2e-09 1 No_clan
Cotton_A_18129_CDS 9 225 3 225 PF00230.20 MIP Family 13 227 227 67.4 1.4e-18 1 No_clan
Cotton_A_28264_CDS 77 124 77 125 PF13041.6 PPR_2 Repeat 1 48 50 47.7 1.3e-12 1 CL0020
Cotton_A_28264_CDS 175 222 175 223 PF13041.6 PPR_2 Repeat 1 48 50 36.5 4e-09 1 CL0020
Cotton_A_28264_CDS 274 316 274 323 PF13041.6 PPR_2 Repeat 1 43 50 39.2 6e-10 1 CL0020
Cotton_A_28264_CDS 342 374 341 374 PF12854.7 PPR_1 Repeat 2 34 34 24.1 2.1e-05 1 CL0020
Cotton_A_28264_CDS 415 444 414 444 PF01535.20 PPR Family 2 31 31 9.8 0.97 1 CL0020
Cotton_A_28264_CDS 448 572 448 572 PF14432.6 DYW_deaminase Family 1 127 127 134.9 1.4e-39 1 CL0109
Cotton_A_00966_CDS 4 256 1 256 PF03151.16 TPT Family 39 290 290 135.5 2.3e-39 1 CL0184
Cotton_A_22443_CDS 48 120 47 121 PF01929.17 Ribosomal_L14e Family 2 74 75 95.6 1.9e-27 1 CL0107
Cotton_A_37575_CDS 29 147 28 180 PF01467.26 CTP_transf_like Domain 2 116 143 36.7 4.3e-09 1 CL0039
Cotton_A_32394_CDS 65 213 63 214 PF00190.22 Cupin_1 Domain 3 150 151 177.4 1.3e-52 1 CL0029
Cotton_A_17612_CDS 14 207 14 209 PF04072.14 LCM Family 1 186 188 87.8 8.4e-25 1 CL0063
Cotton_A_24305_CDS 16 74 7 75 PF01369.20 Sec7 Domain 14 71 183 40.0 3.3e-10 1 No_clan
Cotton_A_15492_CDS 77 106 77 106 PF01535.20 PPR Family 1 30 31 20.2 0.00047 1 CL0020
Cotton_A_15492_CDS 142 188 138 191 PF13812.6 PPR_3 Repeat 10 60 63 15.9 0.01 1 CL0020
Cotton_A_18963_CDS 161 187 158 187 PF07460.11 NUMOD3 Motif 11 37 37 25.8 8.9e-06 1 No_clan
Cotton_A_35909_CDS 2 97 1 98 PF13359.6 DDE_Tnp_4 Domain 34 120 158 39.3 5e-10 1 CL0219
Cotton_A_38767_CDS 138 605 137 605 PF01293.20 PEPCK_ATP Family 2 465 465 703.1 1.5e-211 1 CL0374
Cotton_A_09803_CDS 54 262 15 263 PF09765.9 WD-3 Family 90 285 287 144.4 4.2e-42 1 No_clan
Cotton_A_09803_CDS 274 348 272 349 PF11793.8 FANCL_C Domain 3 69 70 99.8 7.2e-29 1 CL0229
Cotton_A_19798_CDS 261 381 246 439 PF00201.18 UDPGT Family 275 387 499 52.2 4.4e-14 1 CL0113
Cotton_A_39898_CDS 128 186 128 187 PF04483.12 DUF565 Family 1 57 60 61.9 6e-17 1 No_clan
Cotton_A_00464_CDS 83 108 83 112 PF01535.20 PPR Family 1 26 31 25.9 7.1e-06 1 CL0020
Cotton_A_00464_CDS 143 176 143 176 PF13041.6 PPR_2 Repeat 1 34 50 42.4 5.9e-11 1 CL0020
Cotton_A_00464_CDS 177 206 177 207 PF01535.20 PPR Family 1 30 31 30.8 1.9e-07 1 CL0020
Cotton_A_00464_CDS 208 238 208 238 PF01535.20 PPR Family 1 31 31 33.9 2e-08 1 CL0020
Cotton_A_00464_CDS 239 267 239 269 PF01535.20 PPR Family 1 29 31 34.7 1.1e-08 1 CL0020
Cotton_A_00464_CDS 298 347 298 348 PF13041.6 PPR_2 Repeat 1 49 50 43.8 2.1e-11 1 CL0020
Cotton_A_00464_CDS 374 395 372 396 PF01535.20 PPR Family 3 24 31 10.9 0.45 1 CL0020
Cotton_A_00464_CDS 403 450 402 451 PF13041.6 PPR_2 Repeat 2 49 50 43.7 2.3e-11 1 CL0020
Cotton_A_00464_CDS 478 498 476 501 PF01535.20 PPR Family 3 23 31 11.4 0.3 1 CL0020
Cotton_A_00464_CDS 543 572 542 572 PF01535.20 PPR Family 2 31 31 12.3 0.16 1 CL0020
Cotton_A_02796_CDS 48 80 44 80 PF00400.32 WD40 Repeat 6 37 38 26.7 7.2e-06 1 CL0186
Cotton_A_27656_CDS 76 480 73 489 PF01150.17 GDA1_CD39 Family 5 413 423 281.2 1.2e-83 1 CL0108
Cotton_A_27584_CDS 44 78 40 78 PF00400.32 WD40 Repeat 5 38 38 27.8 3.1e-06 1 CL0186
Cotton_A_27584_CDS 661 691 654 692 PF00400.32 WD40 Repeat 8 37 38 17.2 0.007 1 CL0186
Cotton_A_15807_CDS 26 72 24 73 PF01084.20 Ribosomal_S18 Family 3 49 52 64.7 6.7e-18 1 CL0123
Cotton_A_34264_CDS 219 259 215 263 PF13041.6 PPR_2 Repeat 5 45 50 32.2 8.8e-08 1 CL0020
Cotton_A_34264_CDS 288 316 287 317 PF01535.20 PPR Family 2 30 31 17.3 0.004 1 CL0020
Cotton_A_34264_CDS 324 352 323 352 PF01535.20 PPR Family 3 31 31 24.0 3e-05 1 CL0020
Cotton_A_34264_CDS 354 400 354 403 PF13041.6 PPR_2 Repeat 1 47 50 40.2 2.8e-10 1 CL0020
Cotton_A_34264_CDS 497 518 496 522 PF01535.20 PPR Family 2 23 31 11.1 0.37 1 CL0020
Cotton_A_34264_CDS 569 596 567 596 PF01535.20 PPR Family 4 31 31 17.4 0.0038 1 CL0020
Cotton_A_34264_CDS 603 628 602 630 PF01535.20 PPR Family 3 28 31 12.9 0.1 1 CL0020
Cotton_A_34264_CDS 673 716 670 718 PF13041.6 PPR_2 Repeat 5 48 50 32.8 5.7e-08 1 CL0020
Cotton_A_34264_CDS 741 771 741 771 PF01535.20 PPR Family 1 31 31 20.0 0.00056 1 CL0020
Cotton_A_34264_CDS 777 818 773 821 PF13041.6 PPR_2 Repeat 5 46 50 42.8 4.5e-11 1 CL0020
Cotton_A_34264_CDS 843 891 843 892 PF13041.6 PPR_2 Repeat 1 49 50 48.3 8.7e-13 1 CL0020
Cotton_A_33985_CDS 5 57 1 57 PF05056.12 DUF674 Family 382 435 449 31.3 9.7e-08 1 No_clan
Cotton_A_33985_CDS 45 102 44 108 PF05056.12 DUF674 Family 180 235 449 35.0 7.4e-09 1 No_clan
Cotton_A_25963_CDS 406 661 405 661 PF00069.25 Pkinase Domain 2 264 264 242.0 6.6e-72 1 CL0016
Cotton_A_40161_CDS 20 164 19 165 PF17682.1 Tau95_N Domain 2 126 127 91.1 6e-26 1 No_clan
Cotton_A_40161_CDS 203 397 203 397 PF09734.9 Tau95 Family 1 140 140 116.1 2.1e-33 1 CL0123
Cotton_A_03108_CDS 54 483 52 485 PF00083.24 Sugar_tr Family 3 450 452 319.4 3.8e-95 1 CL0015
Cotton_A_02276_CDS 21 108 11 116 PF02362.21 B3 Family 13 92 101 33.9 2.2e-08 1 CL0405
Cotton_A_17265_CDS 32 206 31 206 PF01397.21 Terpene_synth Domain 2 192 192 194.0 2e-57 1 No_clan
Cotton_A_17265_CDS 237 502 237 502 PF03936.16 Terpene_synth_C Domain 1 267 267 355.8 1.3e-106 1 CL0613
Cotton_A_00376_CDS 2 87 1 88 PF01434.18 Peptidase_M41 Domain 98 190 191 62.5 4.4e-17 1 CL0126
Cotton_A_18021_CDS 43 254 29 254 PF07250.11 Glyoxal_oxid_N Family 31 240 240 320.0 7.3e-96 1 No_clan
Cotton_A_14867_CDS 1 223 1 224 PF03629.18 SASA Domain 13 225 226 267.6 8.9e-80 1 CL0264
Cotton_A_05249_CDS 2 432 1 434 PF02458.15 Transferase Family 2 432 434 336.6 1.8e-100 1 CL0149
Cotton_A_13736_CDS 79 480 68 499 PF00067.22 p450 Domain 24 442 463 281.6 1.1e-83 1 No_clan
Cotton_A_23934_CDS 47 98 43 150 PF04127.15 DFP Family 4 53 186 25.6 9.3e-06 1 CL0063
Cotton_A_23934_CDS 169 272 151 282 PF04127.15 DFP Family 74 175 186 43.6 2.9e-11 1 CL0063
Cotton_A_31921_CDS 20 67 20 67 PF12906.7 RINGv Domain 1 48 48 50.9 1.2e-13 1 CL0229
Cotton_A_31921_CDS 73 187 73 187 PF12428.8 DUF3675 Family 1 119 119 110.2 8.5e-32 1 No_clan
Cotton_A_16896_CDS 39 67 35 68 PF12854.7 PPR_1 Repeat 5 33 34 25.1 1e-05 1 CL0020
Cotton_A_16896_CDS 73 102 73 103 PF01535.20 PPR Family 1 30 31 34.9 1e-08 1 CL0020
Cotton_A_16896_CDS 146 172 146 173 PF01535.20 PPR Family 4 30 31 19.3 0.00095 1 CL0020
Cotton_A_16896_CDS 174 201 174 204 PF01535.20 PPR Family 1 28 31 20.3 0.00044 1 CL0020
Cotton_A_16896_CDS 272 320 272 321 PF13041.6 PPR_2 Repeat 1 49 50 46.5 3.1e-12 1 CL0020
Cotton_A_16896_CDS 340 371 339 372 PF12854.7 PPR_1 Repeat 2 33 34 25.8 6.4e-06 1 CL0020
Cotton_A_16896_CDS 446 565 446 569 PF14432.6 DYW_deaminase Family 1 122 127 123.1 6.2e-36 1 CL0109
Cotton_A_37370_CDS 131 263 130 263 PF01926.23 MMR_HSR1 Family 2 114 114 72.3 3.3e-20 1 CL0023
Cotton_A_39142_CDS 100 372 79 378 PF00481.21 PP2C Family 30 250 258 133.6 9.3e-39 1 CL0238
Cotton_A_08989_CDS 32 304 32 304 PF01459.22 Porin_3 Family 1 270 270 268.4 6.8e-80 1 CL0193
Cotton_A_32983_CDS 135 374 135 374 PF00889.19 EF_TS Family 1 208 208 171.4 1.9e-50 1 No_clan
Cotton_A_01388_CDS 46 157 46 183 PF00875.18 DNA_photolyase Domain 1 115 164 85.2 4.7e-24 1 CL0039
Cotton_A_01388_CDS 429 670 429 672 PF12697.7 Abhydrolase_6 Domain 1 218 220 58.5 1.4e-15 1 CL0028
Cotton_A_12623_CDS 11 53 10 53 PF13639.6 zf-RING_2 Domain 2 44 44 53.7 1.8e-14 1 CL0229
Cotton_A_04910_CDS 180 332 179 345 PF00069.25 Pkinase Domain 2 151 264 127.9 4.4e-37 1 CL0016
Cotton_A_04910_CDS 413 516 401 516 PF00069.25 Pkinase Domain 154 264 264 71.5 6.8e-20 1 CL0016
Cotton_A_24252_CDS 24 78 21 78 PF16177.5 ACAS_N Family 5 55 55 34.0 2e-08 1 CL0378
Cotton_A_03605_CDS 76 126 75 127 PF00847.20 AP2 Domain 2 53 54 51.5 8.5e-14 1 CL0081
Cotton_A_31309_CDS 143 381 143 381 PF01063.19 Aminotran_4 Domain 1 223 223 142.5 1.7e-41 1 No_clan
Cotton_A_16453_CDS 60 157 34 162 PF17004.5 SRP_TPR_like Repeat 18 113 117 62.1 4.6e-17 1 CL0020
Cotton_A_16453_CDS 555 603 545 603 PF08492.12 SRP72 Domain 13 58 58 58.1 8.7e-16 1 No_clan
Cotton_A_00197_CDS 116 357 99 357 PF05705.14 DUF829 Domain 5 241 241 117.5 8.6e-34 1 CL0028
Cotton_A_17039_CDS 127 244 126 244 PF01926.23 MMR_HSR1 Family 2 114 114 76.7 1.4e-21 1 CL0023
Cotton_A_17039_CDS 327 404 327 404 PF07650.17 KH_2 Domain 1 78 78 56.8 1.4e-15 1 CL0007
Cotton_A_26988_CDS 42 85 40 86 PF12937.7 F-box-like Domain 3 47 48 29.2 6.4e-07 1 CL0271
Cotton_A_26988_CDS 500 542 499 542 PF00514.23 Arm Repeat 2 41 41 34.8 1.1e-08 1 CL0020
Cotton_A_26988_CDS 545 584 543 584 PF00514.23 Arm Repeat 3 41 41 27.7 1.9e-06 1 CL0020
Cotton_A_26988_CDS 592 628 589 629 PF00514.23 Arm Repeat 4 40 41 34.8 1.1e-08 1 CL0020
Cotton_A_26988_CDS 630 672 630 673 PF00514.23 Arm Repeat 1 40 41 21.0 0.00025 1 CL0020
Cotton_A_26988_CDS 676 713 674 714 PF00514.23 Arm Repeat 3 40 41 34.4 1.5e-08 1 CL0020
Cotton_A_05415_CDS 5 95 5 116 PF18052.1 Rx_N Domain 1 87 93 76.6 1.3e-21 1 No_clan
Cotton_A_10900_CDS 128 266 127 267 PF00892.20 EamA Family 2 136 137 53.2 3.3e-14 1 CL0184
Cotton_A_09726_CDS 14 238 12 262 PF02144.16 Rad1 Family 3 256 275 78.1 5.7e-22 1 CL0060
Cotton_A_30914_CDS 113 226 113 226 PF03479.15 DUF296 Domain 1 107 107 92.6 1.8e-26 1 CL0615
Cotton_A_23839_CDS 67 536 67 544 PF00067.22 p450 Domain 1 454 463 258.8 9.1e-77 1 No_clan
Cotton_A_30142_CDS 157 206 157 206 PF00847.20 AP2 Domain 1 53 54 33.1 4.9e-08 1 CL0081
Cotton_A_30142_CDS 249 299 249 300 PF00847.20 AP2 Domain 1 53 54 37.1 2.6e-09 1 CL0081
Cotton_A_04325_CDS 39 298 37 298 PF07714.17 Pkinase_Tyr Domain 3 259 259 198.6 1e-58 1 CL0016
Cotton_A_03599_CDS 22 58 20 61 PF00646.33 F-box Domain 9 45 48 33.9 2e-08 1 CL0271
Cotton_A_25320_CDS 11 66 10 67 PF05347.15 Complex1_LYR Family 2 58 59 63.2 1.7e-17 1 CL0491
Cotton_A_27466_CDS 1 141 1 143 PF04654.12 DUF599 Family 63 206 210 160.5 3.6e-47 1 No_clan
Cotton_A_25615_CDS 22 61 21 62 PF08263.12 LRRNT_2 Family 2 40 41 52.1 6e-14 1 No_clan
Cotton_A_25615_CDS 160 205 160 210 PF12799.7 LRR_4 Repeat 1 42 44 28.9 1e-06 1 CL0022
Cotton_A_25615_CDS 412 703 408 704 PF00069.25 Pkinase Domain 7 260 264 120.8 6.2e-35 1 CL0016
Cotton_A_20345_CDS 11 390 11 390 PF04177.12 TAP42 Family 1 319 319 289.0 4.2e-86 1 No_clan
Cotton_A_09415_CDS 65 154 64 155 PF00166.21 Cpn10 Domain 2 92 93 93.1 8.1e-27 1 CL0296
Cotton_A_09415_CDS 163 254 162 255 PF00166.21 Cpn10 Domain 2 92 93 92.9 9.4e-27 1 CL0296
Cotton_A_14711_CDS 104 251 104 252 PF00675.20 Peptidase_M16 Family 1 148 149 185.2 6.4e-55 1 CL0094
Cotton_A_14711_CDS 258 443 257 443 PF05193.21 Peptidase_M16_C Domain 2 183 183 127.5 5.8e-37 1 CL0094
Cotton_A_11862_CDS 115 146 113 146 PF06200.14 tify Domain 3 34 34 60.6 6.2e-17 1 No_clan
Cotton_A_11862_CDS 200 224 200 225 PF09425.10 CCT_2 Motif 1 25 26 54.4 8.2e-15 1 CL0281
Cotton_A_33623_CDS 24 58 22 59 PF14538.6 Raptor_N Domain 110 144 147 43.4 3.2e-11 1 CL0093
Cotton_A_04563_CDS 471 752 470 754 PF00069.25 Pkinase Domain 2 260 264 162.9 9.1e-48 1 CL0016
Cotton_A_26557_CDS 5 36 4 37 PF12854.7 PPR_1 Repeat 2 33 34 38.9 5e-10 1 CL0020
Cotton_A_26557_CDS 45 93 45 94 PF13041.6 PPR_2 Repeat 1 49 50 55.0 6.7e-15 1 CL0020
Cotton_A_26557_CDS 115 163 115 164 PF13041.6 PPR_2 Repeat 1 49 50 64.7 6.5e-18 1 CL0020
Cotton_A_26557_CDS 185 232 185 233 PF13041.6 PPR_2 Repeat 1 48 50 64.2 9.3e-18 1 CL0020
Cotton_A_26557_CDS 259 287 258 288 PF01535.20 PPR Family 2 30 31 21.2 0.00023 1 CL0020
Cotton_A_26557_CDS 294 322 293 323 PF01535.20 PPR Family 2 30 31 19.7 0.0007 1 CL0020
Cotton_A_26557_CDS 327 372 326 373 PF13041.6 PPR_2 Repeat 3 48 50 61.3 7.5e-17 1 CL0020
Cotton_A_00445_CDS 6 223 5 226 PF00009.27 GTP_EFTU Domain 2 191 194 180.9 1.9e-53 1 CL0023
Cotton_A_00445_CDS 248 313 248 315 PF03144.25 GTP_EFTU_D2 Domain 1 72 74 53.4 2.6e-14 1 CL0575
Cotton_A_00445_CDS 322 429 321 430 PF03143.17 GTP_EFTU_D3 Domain 2 111 112 134.1 2.5e-39 1 No_clan
Cotton_A_13587_CDS 6 117 6 118 PF01778.17 Ribosomal_L28e Family 1 114 115 128.8 1.6e-37 1 No_clan
Cotton_A_13587_CDS 138 223 137 290 PF04874.14 Mak16 Family 2 97 100 54.3 1.6e-14 1 No_clan
Cotton_A_23386_CDS 9 53 9 54 PF03107.16 C1_2 Domain 1 46 47 35.0 1.3e-08 1 CL0006
Cotton_A_15376_CDS 27 174 23 190 PF00332.18 Glyco_hydro_17 Domain 27 176 313 47.9 1.4e-12 1 CL0058
Cotton_A_15376_CDS 327 399 327 399 PF07983.13 X8 Domain 1 76 76 81.1 7.2e-23 1 No_clan
Cotton_A_25678_CDS 40 112 39 113 PF02201.18 SWIB Domain 6 73 74 46.8 2e-12 1 No_clan
Cotton_A_25678_CDS 167 266 167 266 PF03126.18 Plus-3 Domain 1 109 109 51.5 1.2e-13 1 No_clan
Cotton_A_04862_CDS 65 126 64 126 PF05498.11 RALF Family 2 65 65 107.1 6.4e-31 1 No_clan
Cotton_A_22708_CDS 2 385 1 387 PF00022.19 Actin Family 2 404 407 368.8 2.6e-110 1 CL0108
Cotton_A_34836_CDS 2068 2364 2067 2368 PF06650.12 SHR-BD Family 2 266 271 83.2 1.9e-23 1 No_clan
Cotton_A_34836_CDS 2622 2760 2621 2782 PF16909.5 VPS13_C Family 2 151 178 35.6 7.7e-09 1 No_clan
Cotton_A_11111_CDS 166 263 166 278 PF02362.21 B3 Family 1 85 101 77.9 4.2e-22 1 CL0405
Cotton_A_28064_CDS 4 76 1 76 PF03242.13 LEA_3 Family 17 93 93 62.5 4.7e-17 1 No_clan
Cotton_A_08836_CDS 19 79 19 83 PF01918.21 Alba Family 1 62 67 65.7 2.4e-18 1 CL0441
Cotton_A_03207_CDS 194 310 193 312 PF00651.31 BTB Domain 2 109 111 91.9 2.8e-26 1 CL0033
Cotton_A_20760_CDS 11 367 2 367 PF05633.11 BPS1 Family 35 388 388 514.2 2.2e-154 1 CL0133
Cotton_A_10907_CDS 5 377 4 377 PF00022.19 Actin Family 2 407 407 491.1 2e-147 1 CL0108
Cotton_A_31826_CDS 5 155 5 156 PF00407.19 Bet_v_1 Domain 1 150 151 191.6 6.7e-57 1 CL0209
Cotton_A_32654_CDS 48 377 47 378 PF11955.8 PORR Family 2 325 326 358.5 2.7e-107 1 No_clan
Cotton_A_23630_CDS 20 76 20 87 PF00076.22 RRM_1 Domain 1 56 70 61.1 6.5e-17 1 CL0221
Cotton_A_35706_CDS 5 214 5 214 PF01734.22 Patatin Family 1 204 204 76.3 3.6e-21 1 CL0323
Cotton_A_20267_CDS 9 97 9 125 PF18052.1 Rx_N Domain 1 89 93 88.3 3e-25 1 No_clan
Cotton_A_20267_CDS 175 392 174 424 PF00931.22 NB-ARC Domain 2 213 252 151.5 2.3e-44 1 CL0023
Cotton_A_34416_CDS 8 176 8 177 PF00535.26 Glycos_transf_2 Family 1 169 170 125.2 2.3e-36 1 CL0110
Cotton_A_39237_CDS 80 139 80 140 PF18579.1 Raf1_HTH Domain 1 60 61 82.9 9e-24 1 CL0123
Cotton_A_39237_CDS 152 261 152 261 PF18578.1 Raf1_N Domain 1 106 106 121.2 2.4e-35 1 No_clan
Cotton_A_39237_CDS 281 432 281 432 PF18087.1 RuBisCo_chap_C Domain 1 138 138 119.6 7.2e-35 1 No_clan
Cotton_A_02538_CDS 47 187 46 188 PF03018.14 Dirigent Family 2 147 148 190.0 1.9e-56 1 CL0650
Cotton_A_17661_CDS 22 120 22 120 PF00447.17 HSF_DNA-bind Domain 1 96 96 98.7 2.3e-28 1 CL0123
Cotton_A_19392_CDS 75 325 75 326 PF00520.31 Ion_trans Family 1 244 245 126.2 1.2e-36 1 CL0030
Cotton_A_19392_CDS 416 500 414 502 PF00027.29 cNMP_binding Domain 3 87 89 53.0 2.6e-14 1 CL0029
Cotton_A_19392_CDS 553 631 546 636 PF12796.7 Ank_2 Repeat 8 77 83 47.2 2.5e-12 1 CL0465
Cotton_A_19392_CDS 642 699 633 702 PF12796.7 Ank_2 Repeat 29 80 83 28.3 2e-06 1 CL0465
Cotton_A_19392_CDS 757 828 756 828 PF11834.8 KHA Family 2 67 67 71.1 6.1e-20 1 No_clan
Cotton_A_23644_CDS 42 613 41 613 PF02705.16 K_trans Family 2 534 534 658.8 5.3e-198 1 CL0062
Cotton_A_17377_CDS 13 224 12 227 PF10033.9 ATG13 Family 2 237 240 112.6 2.4e-32 1 CL0651
Cotton_A_04353_CDS 77 164 75 167 PF12796.7 Ank_2 Repeat 2 80 83 43.7 3e-11 1 CL0465
Cotton_A_04353_CDS 199 449 194 450 PF07714.17 Pkinase_Tyr Domain 17 258 259 171.7 1.7e-50 1 CL0016
Cotton_A_38027_CDS 24 210 23 210 PF04669.13 Polysacc_synt_4 Family 2 190 190 247.3 8.2e-74 1 No_clan
Cotton_A_20675_CDS 16 114 16 115 PF03195.14 LOB Family 1 98 99 132.3 7.3e-39 1 No_clan
Cotton_A_16347_CDS 24 88 24 88 PF00076.22 RRM_1 Domain 1 70 70 48.4 5.9e-13 1 CL0221
Cotton_A_16347_CDS 101 165 101 165 PF00076.22 RRM_1 Domain 1 70 70 49.9 2.1e-13 1 CL0221
Cotton_A_16347_CDS 233 287 230 288 PF00076.22 RRM_1 Domain 10 69 70 28.6 9.3e-07 1 CL0221
Cotton_A_16347_CDS 472 589 469 600 PF07744.13 SPOC Domain 5 135 151 58.7 6.1e-16 1 CL0616
Cotton_A_01711_CDS 47 359 47 359 PF00933.21 Glyco_hydro_3 Domain 1 319 319 190.4 5e-56 1 CL0058
Cotton_A_01711_CDS 397 575 396 575 PF01915.22 Glyco_hydro_3_C Domain 2 167 204 92.2 4e-26 1 No_clan
Cotton_A_33316_CDS 52 487 52 508 PF02990.16 EMP70 Family 1 394 519 433.1 1.5e-129 1 No_clan
Cotton_A_28103_CDS 46 131 44 166 PF00085.20 Thioredoxin Domain 3 78 103 41.2 1.2e-10 1 CL0172
Cotton_A_28103_CDS 310 404 310 404 PF04777.13 Evr1_Alr Family 1 100 100 72.5 3.1e-20 1 No_clan
Cotton_A_30601_CDS 490 598 479 598 PF00271.31 Helicase_C Family 13 111 111 48.4 9.9e-13 1 CL0023
Cotton_A_30601_CDS 680 722 679 722 PF18147.1 Suv3_C_1 Domain 2 43 43 61.4 5.2e-17 1 No_clan
Cotton_A_30601_CDS 744 791 744 792 PF12513.8 SUV3_C Family 1 47 48 49.5 3e-13 1 No_clan
Cotton_A_15340_CDS 30 91 29 91 PF00226.31 DnaJ Domain 2 63 63 88.9 1.7e-25 1 CL0392
Cotton_A_20685_CDS 3 96 1 96 PF07123.12 PsbW Family 39 132 132 154.5 1.5e-45 1 No_clan
Cotton_A_36397_CDS 48 286 44 290 PF00141.23 peroxidase Domain 5 225 229 238.5 7.3e-71 1 CL0617
Cotton_A_21675_CDS 131 523 94 527 PF00083.24 Sugar_tr Family 45 446 452 111.1 5.8e-32 1 CL0015
Cotton_A_38922_CDS 2 67 1 68 PF00067.22 p450 Domain 241 308 463 40.8 1.1e-10 1 No_clan
Cotton_A_38922_CDS 63 135 62 159 PF00067.22 p450 Domain 349 436 463 51.3 7.8e-14 1 No_clan
Cotton_A_17659_CDS 148 194 147 195 PF13920.6 zf-C3HC4_3 Domain 2 49 50 36.9 2.3e-09 1 CL0229
Cotton_A_11815_CDS 54 89 51 89 PF00400.32 WD40 Repeat 4 38 38 14.0 0.069 1 CL0186
Cotton_A_11815_CDS 94 130 93 130 PF00400.32 WD40 Repeat 2 38 38 17.0 0.0078 1 CL0186
Cotton_A_11815_CDS 179 214 178 214 PF00400.32 WD40 Repeat 2 38 38 15.6 0.022 1 CL0186
Cotton_A_11815_CDS 261 297 260 297 PF00400.32 WD40 Repeat 2 37 38 29.8 7.3e-07 1 CL0186
Cotton_A_35191_CDS 58 204 52 208 PF00067.22 p450 Domain 200 346 463 56.4 2.2e-15 1 No_clan
Cotton_A_23413_CDS 273 390 273 390 PF03109.16 ABC1 Family 1 119 119 100.3 7.7e-29 1 CL0016
Cotton_A_23413_CDS 427 498 403 519 PF01636.23 APH Family 141 209 240 26.9 4.1e-06 1 CL0016
Cotton_A_08599_CDS 14 111 14 112 PF03195.14 LOB Family 1 98 99 148.2 8.3e-44 1 No_clan
Cotton_A_17342_CDS 223 262 222 266 PF13920.6 zf-C3HC4_3 Domain 2 45 50 29.4 5.5e-07 1 CL0229
Cotton_A_03937_CDS 55 114 54 115 PF00046.29 Homeodomain Domain 2 56 57 53.1 2.1e-14 1 CL0123
Cotton_A_07501_CDS 56 241 55 297 PF03634.13 TCP Family 2 90 156 105.7 3.2e-30 1 No_clan
Cotton_A_15857_CDS 21 64 13 72 PF09279.11 EF-hand_like Domain 9 53 86 23.5 5.9e-05 1 CL0220
Cotton_A_15857_CDS 100 242 100 243 PF00388.19 PI-PLC-X Family 1 144 145 161.0 1.3e-47 1 CL0384
Cotton_A_15857_CDS 346 432 332 432 PF00387.19 PI-PLC-Y Family 28 115 115 103.4 9e-30 1 CL0384
Cotton_A_15857_CDS 474 553 450 561 PF00168.30 C2 Domain 19 94 103 49.8 3.4e-13 1 CL0154
Cotton_A_25234_CDS 21 155 20 157 PF03004.14 Transposase_24 Family 2 140 142 74.6 8e-21 1 No_clan
Cotton_A_10619_CDS 208 416 208 421 PF00270.29 DEAD Domain 1 170 176 146.9 5.1e-43 1 CL0023
Cotton_A_10619_CDS 481 589 481 590 PF00271.31 Helicase_C Family 1 110 111 99.9 9.8e-29 1 CL0023
Cotton_A_14640_CDS 82 198 11 231 PF01925.19 TauE Family 3 110 236 45.5 6.7e-12 1 CL0292
Cotton_A_14640_CDS 256 436 244 443 PF01925.19 TauE Family 70 234 236 53.2 3e-14 1 CL0292
Cotton_A_23294_CDS 2 394 2 395 PF17681.1 GCP_N_terminal Domain 1 304 306 164.2 5.3e-48 1 CL0540
Cotton_A_23294_CDS 399 720 399 720 PF04130.13 GCP_C_terminal Domain 1 309 309 194.2 3.6e-57 1 CL0540
Cotton_A_32830_CDS 50 95 47 95 PF00010.26 HLH Domain 5 53 53 36.4 3.6e-09 1 No_clan
Cotton_A_35942_CDS 1 100 1 102 PF00190.22 Cupin_1 Domain 50 149 151 107.9 3.5e-31 1 CL0029
Cotton_A_07782_CDS 36 494 36 505 PF00067.22 p450 Domain 1 451 463 356.6 1.9e-106 1 No_clan
Cotton_A_06958_CDS 314 709 314 709 PF07990.12 NABP Domain 1 388 388 485.1 2.2e-145 1 No_clan
Cotton_A_06958_CDS 710 741 710 744 PF00806.19 PUF Repeat 1 32 35 28.9 5.6e-07 1 CL0020
Cotton_A_06958_CDS 754 777 747 779 PF00806.19 PUF Repeat 9 32 35 25.4 7.2e-06 1 CL0020
Cotton_A_06958_CDS 782 813 782 816 PF00806.19 PUF Repeat 1 32 35 25.8 5.3e-06 1 CL0020
Cotton_A_06958_CDS 819 852 818 852 PF00806.19 PUF Repeat 2 35 35 30.3 2e-07 1 CL0020
Cotton_A_06958_CDS 855 885 854 886 PF00806.19 PUF Repeat 2 32 35 32.9 2.9e-08 1 CL0020
Cotton_A_06958_CDS 898 924 891 925 PF00806.19 PUF Repeat 8 34 35 27.2 2e-06 1 CL0020
Cotton_A_06958_CDS 928 960 927 961 PF00806.19 PUF Repeat 2 34 35 24.2 1.7e-05 1 CL0020
Cotton_A_06958_CDS 977 1003 974 1003 PF00806.19 PUF Repeat 9 35 35 29.2 4.4e-07 1 CL0020
Cotton_A_04269_CDS 2 68 2 68 PF00035.26 dsrm Domain 1 67 67 59.9 3e-16 1 CL0196
Cotton_A_04269_CDS 88 151 88 153 PF00035.26 dsrm Domain 1 65 67 47.8 1.8e-12 1 CL0196
Cotton_A_33509_CDS 18 257 10 290 PF03291.16 Pox_MCEL Family 42 291 333 125.6 2.3e-36 1 CL0063
Cotton_A_18036_CDS 37 99 37 108 PF01221.18 Dynein_light Domain 1 65 86 77.4 7.7e-22 1 No_clan
Cotton_A_36619_CDS 151 299 150 299 PF00005.27 ABC_tran Domain 2 137 137 104.9 4.7e-30 1 CL0023
Cotton_A_36619_CDS 467 687 466 689 PF01061.24 ABC2_membrane Family 2 208 210 122.6 1.4e-35 1 CL0181
Cotton_A_11652_CDS 95 169 17 170 PF02225.22 PA Family 19 88 89 32.0 9.2e-08 1 CL0364
Cotton_A_11652_CDS 249 524 244 526 PF04258.13 Peptidase_A22B Family 8 282 284 286.7 2.1e-85 1 CL0130
Cotton_A_09984_CDS 327 369 326 369 PF13639.6 zf-RING_2 Domain 2 44 44 47.0 2.4e-12 1 CL0229
Cotton_A_34351_CDS 90 233 88 234 PF01699.24 Na_Ca_ex Family 3 150 151 82.1 4e-23 1 No_clan
Cotton_A_34351_CDS 394 540 393 547 PF01699.24 Na_Ca_ex Family 2 146 151 75.7 3.6e-21 1 No_clan
Cotton_A_01615_CDS 1 147 1 148 PF01217.20 Clat_adaptor_s Domain 1 141 142 147.0 3.3e-43 1 CL0212
Cotton_A_11315_CDS 21 60 20 60 PF08263.12 LRRNT_2 Family 2 41 41 51.0 1.3e-13 1 No_clan
Cotton_A_11315_CDS 136 195 136 196 PF13855.6 LRR_8 Repeat 1 60 61 35.4 6.5e-09 1 CL0022
Cotton_A_11315_CDS 682 901 680 959 PF00069.25 Pkinase Domain 3 204 264 144.4 4e-42 1 CL0016
Cotton_A_03553_CDS 4 137 4 139 PF03952.16 Enolase_N Domain 1 129 131 179.0 4.3e-53 1 CL0227
Cotton_A_03553_CDS 149 441 148 443 PF00113.22 Enolase_C Domain 2 294 296 530.8 8.6e-160 1 CL0256
Cotton_A_16959_CDS 93 200 82 203 PF08613.11 Cyclin Family 38 148 161 102.4 3.1e-29 1 CL0065
Cotton_A_30671_CDS 171 216 167 217 PF12678.7 zf-rbx1 Domain 9 54 55 42.5 5.9e-11 1 CL0229
Cotton_A_01922_CDS 29 133 28 135 PF01490.18 Aa_trans Family 2 106 409 96.4 1.5e-27 1 CL0062
Cotton_A_01299_CDS 8 101 7 102 PF01158.18 Ribosomal_L36e Family 2 95 96 144.7 7.7e-43 1 No_clan
Cotton_A_21545_CDS 70 116 70 116 PF12906.7 RINGv Domain 1 48 48 58.2 6.4e-16 1 CL0229
Cotton_A_00429_CDS 79 347 74 348 PF07714.17 Pkinase_Tyr Domain 6 258 259 158.9 1.4e-46 1 CL0016
Cotton_A_30948_CDS 21 208 21 208 PF15704.5 Mt_ATP_synt Family 1 188 188 264.7 4.7e-79 1 No_clan
Cotton_A_00267_CDS 5 69 3 69 PF03108.15 DBD_Tnp_Mut Family 3 67 67 83.1 9.9e-24 1 CL0274
Cotton_A_00267_CDS 208 295 200 298 PF10551.9 MULE Domain 9 93 96 55.4 6.4e-15 1 CL0219
Cotton_A_00267_CDS 445 478 429 480 PF04434.17 SWIM Domain 8 38 40 41.0 1.1e-10 1 No_clan
Cotton_A_00428_CDS 291 381 290 386 PF00566.18 RabGAP-TBC Family 2 91 215 58.0 9.9e-16 1 No_clan
Cotton_A_00428_CDS 389 489 386 493 PF00566.18 RabGAP-TBC Family 111 211 215 77.4 1.2e-21 1 No_clan
Cotton_A_01991_CDS 14 121 14 122 PF00639.21 Rotamase Domain 1 96 97 85.5 3.8e-24 1 CL0487
Cotton_A_36493_CDS 32 280 32 288 PF07651.16 ANTH Domain 1 265 277 190.2 3.7e-56 1 CL0009
Cotton_A_14659_CDS 57 87 53 87 PF00132.24 Hexapep Repeat 6 36 36 19.1 0.00076 1 CL0536
Cotton_A_14659_CDS 120 151 119 151 PF00132.24 Hexapep Repeat 2 34 36 22.4 7.1e-05 1 CL0536
Cotton_A_13840_CDS 100 279 86 279 PF00544.19 Pec_lyase_C Domain 34 211 211 89.9 1.7e-25 1 CL0268
Cotton_A_20090_CDS 5 24 4 24 PF00612.27 IQ Motif 2 21 21 13.5 0.047 1 CL0220
Cotton_A_20090_CDS 75 95 75 95 PF00612.27 IQ Motif 1 21 21 14.6 0.021 1 CL0220
Cotton_A_20090_CDS 567 671 567 672 PF01843.19 DIL Family 1 103 104 87.4 6.4e-25 1 No_clan
Cotton_A_26872_CDS 26 153 26 154 PF07741.13 BRF1 Family 1 100 101 51.6 9.5e-14 1 No_clan
Cotton_A_03362_CDS 3 119 1 131 PF07279.11 DUF1442 Family 4 124 218 58.5 5.6e-16 1 CL0063
Cotton_A_35346_CDS 43 119 42 125 PF00139.19 Lectin_legB Domain 2 74 249 53.7 2.1e-14 1 CL0004
Cotton_A_35346_CDS 126 248 122 255 PF00139.19 Lectin_legB Domain 119 240 249 98.2 5.3e-28 1 CL0004
Cotton_A_07874_CDS 2 49 2 50 PF13456.6 RVT_3 Domain 1 50 124 23.2 4.5e-05 1 CL0219
Cotton_A_29926_CDS 7 65 7 114 PF14226.6 DIOX_N Family 1 65 118 41.6 1.8e-10 1 CL0029
Cotton_A_29926_CDS 150 246 147 247 PF03171.20 2OG-FeII_Oxy Domain 4 99 101 70.8 1.1e-19 1 CL0029
Cotton_A_03810_CDS 28 208 26 219 PF02724.14 CDC45 Family 3 187 636 118.9 2.1e-34 1 No_clan
Cotton_A_03810_CDS 222 558 215 559 PF02724.14 CDC45 Family 264 635 636 330.0 2.6e-98 1 No_clan
Cotton_A_30593_CDS 87 379 86 380 PF01095.19 Pectinesterase Family 2 297 298 198.5 1e-58 1 CL0268
Cotton_A_33383_CDS 116 175 115 181 PF00076.22 RRM_1 Domain 2 64 70 28.9 7.3e-07 1 CL0221
Cotton_A_33876_CDS 95 299 90 367 PF00069.25 Pkinase Domain 6 202 264 155.0 2.3e-45 1 CL0016
Cotton_A_02429_CDS 27 456 15 456 PF03600.16 CitMHS Family 8 300 300 183.5 5.3e-54 1 CL0182
Cotton_A_15916_CDS 164 294 164 295 PF00782.20 DSPc Domain 1 132 133 90.5 7.7e-26 1 CL0031
Cotton_A_23061_CDS 102 310 101 312 PF02405.16 MlaE Family 2 210 212 230.2 2e-68 1 No_clan
Cotton_A_26265_CDS 223 357 221 379 PF05450.15 Nicastrin Family 3 149 234 29.1 6.2e-07 1 CL0035
Cotton_A_13091_CDS 50 68 27 68 PF08263.12 LRRNT_2 Family 24 41 41 21.1 0.00029 1 No_clan
Cotton_A_13091_CDS 121 165 121 166 PF12799.7 LRR_4 Repeat 1 43 44 28.0 2e-06 1 CL0022
Cotton_A_13091_CDS 349 602 346 605 PF00069.25 Pkinase Domain 5 258 264 95.1 4.4e-27 1 CL0016
Cotton_A_12941_CDS 9 78 9 79 PF00076.22 RRM_1 Domain 1 69 70 82.0 1.9e-23 1 CL0221
Cotton_A_07970_CDS 22 82 18 82 PF17745.1 Ydr279_N Domain 6 79 79 43.3 3.3e-11 1 CL0662
Cotton_A_07970_CDS 85 174 85 276 PF09468.10 RNase_H2-Ydr279 Domain 1 99 160 31.1 2.3e-07 1 CL0123
Cotton_A_27549_CDS 3 61 1 61 PF00076.22 RRM_1 Domain 12 70 70 38.0 1.1e-09 1 CL0221
Cotton_A_29013_CDS 197 264 197 264 PF00462.24 Glutaredoxin Domain 1 60 60 45.5 6.6e-12 1 CL0172
Cotton_A_12558_CDS 4 101 1 108 PF00069.25 Pkinase Domain 83 168 264 66.5 2.4e-18 1 CL0016
Cotton_A_12558_CDS 204 244 201 245 PF00382.19 TFIIB Domain 11 51 71 30.5 2.8e-07 1 CL0065
Cotton_A_12558_CDS 287 346 274 346 PF00382.19 TFIIB Domain 12 71 71 37.3 2e-09 1 CL0065
Cotton_A_12558_CDS 502 627 502 627 PF07741.13 BRF1 Family 1 101 101 102.1 1.7e-29 1 No_clan
Cotton_A_10310_CDS 222 305 222 307 PF08032.12 SpoU_sub_bind Domain 2 74 76 56.6 2.4e-15 1 CL0101
Cotton_A_10310_CDS 323 446 322 450 PF00588.19 SpoU_methylase Family 2 124 142 83.7 1.4e-23 1 CL0098
Cotton_A_17918_CDS 79 126 77 127 PF00010.26 HLH Domain 4 52 53 37.9 1.3e-09 1 No_clan
Cotton_A_00315_CDS 91 247 89 248 PF01699.24 Na_Ca_ex Family 4 150 151 77.6 9.1e-22 1 No_clan
Cotton_A_00315_CDS 280 418 279 424 PF01699.24 Na_Ca_ex Family 2 145 151 71.4 7.7e-20 1 No_clan
Cotton_A_28487_CDS 36 237 31 307 PF07714.17 Pkinase_Tyr Domain 6 204 259 145.0 2.4e-42 1 CL0016
Cotton_A_13430_CDS 46 126 46 133 PF16656.5 Pur_ac_phosph_N Domain 1 84 94 72.9 2.3e-20 1 CL0159
Cotton_A_13430_CDS 141 334 140 334 PF00149.28 Metallophos Domain 2 204 204 77.8 1.5e-21 1 CL0163
Cotton_A_13430_CDS 349 409 349 412 PF14008.6 Metallophos_C Domain 1 60 63 59.4 4.7e-16 1 No_clan
Cotton_A_08981_CDS 103 222 102 223 PF02893.20 GRAM Domain 2 112 114 67.1 1.1e-18 1 CL0266
Cotton_A_00957_CDS 247 409 227 429 PF00201.18 UDPGT Family 263 406 499 52.4 3.6e-14 1 CL0113
Cotton_A_12824_CDS 95 262 36 263 PF01501.20 Glyco_transf_8 Family 76 255 256 34.6 1.4e-08 1 CL0110
Cotton_A_09197_CDS 8 259 8 261 PF06813.13 Nodulin-like Family 1 248 250 204.8 1.5e-60 1 CL0015
Cotton_A_09197_CDS 336 528 336 537 PF07690.16 MFS_1 Family 1 176 353 39.2 3.9e-10 1 CL0015
Cotton_A_34290_CDS 7 107 7 112 PF01251.18 Ribosomal_S7e Family 1 101 184 125.7 1.7e-36 1 CL0652
Cotton_A_01317_CDS 73 167 73 168 PF00173.28 Cyt-b5 Domain 1 73 74 56.6 2.2e-15 1 No_clan
Cotton_A_20435_CDS 140 317 140 320 PF01758.16 SBF Family 1 192 195 172.2 1e-50 1 CL0064
Cotton_A_29392_CDS 45 285 45 287 PF00141.23 peroxidase Domain 1 227 229 242.4 4.6e-72 1 CL0617
Cotton_A_22000_CDS 143 172 142 172 PF01535.20 PPR Family 2 31 31 18.6 0.0015 1 CL0020
Cotton_A_22000_CDS 179 205 178 206 PF01535.20 PPR Family 3 29 31 14.9 0.024 1 CL0020
Cotton_A_22000_CDS 208 251 208 255 PF13041.6 PPR_2 Repeat 1 44 50 38.0 1.4e-09 1 CL0020
Cotton_A_22000_CDS 285 308 281 309 PF01535.20 PPR Family 5 28 31 10.2 0.73 1 CL0020
Cotton_A_22000_CDS 318 342 318 344 PF01535.20 PPR Family 3 27 31 15.7 0.013 1 CL0020
Cotton_A_22000_CDS 458 472 457 476 PF01535.20 PPR Family 2 16 31 10.7 0.52 1 CL0020
Cotton_A_37893_CDS 76 155 73 155 PF05542.11 DUF760 Family 4 84 84 61.7 6.4e-17 1 No_clan
Cotton_A_37893_CDS 248 330 248 332 PF05542.11 DUF760 Family 1 64 84 53.5 2.3e-14 1 No_clan
Cotton_A_10420_CDS 31 149 31 150 PF00917.26 MATH Domain 1 111 113 50.2 2.4e-13 1 CL0389
Cotton_A_11890_CDS 44 139 44 159 PF14365.6 Neprosin_AP Family 1 97 118 131.6 1.8e-38 1 No_clan
Cotton_A_11890_CDS 189 395 189 395 PF03080.15 Neprosin Family 1 222 222 171.5 1.7e-50 1 No_clan
Cotton_A_33400_CDS 98 281 98 281 PF04669.13 Polysacc_synt_4 Family 1 190 190 242.8 1.9e-72 1 No_clan
Cotton_A_18189_CDS 164 224 164 224 PF13855.6 LRR_8 Repeat 1 61 61 32.6 5e-08 1 CL0022
Cotton_A_18189_CDS 303 323 303 333 PF00560.33 LRR_1 Repeat 1 21 23 12.7 0.15 1 CL0022
Cotton_A_18189_CDS 362 468 352 471 PF00069.25 Pkinase Domain 153 260 264 34.2 1.6e-08 1 CL0016
Cotton_A_33364_CDS 3 149 2 152 PF00407.19 Bet_v_1 Domain 2 148 151 120.0 8e-35 1 CL0209
Cotton_A_28518_CDS 38 110 11 110 PF00168.30 C2 Domain 24 103 103 28.5 1.4e-06 1 CL0154
Cotton_A_28518_CDS 298 336 297 336 PF00614.22 PLDc Family 2 28 28 23.5 4.2e-05 1 CL0479
Cotton_A_28518_CDS 614 638 611 638 PF00614.22 PLDc Family 4 28 28 23.2 5.5e-05 1 CL0479
Cotton_A_28518_CDS 685 757 685 758 PF12357.8 PLD_C Family 1 71 72 80.2 7.5e-23 1 No_clan
Cotton_A_12837_CDS 6 52 6 52 PF16891.5 STPPase_N Family 1 48 48 78.6 3.4e-22 1 No_clan
Cotton_A_12837_CDS 54 229 53 247 PF00149.28 Metallophos Domain 2 185 204 119.2 3.2e-34 1 CL0163
Cotton_A_06347_CDS 83 133 82 134 PF00847.20 AP2 Domain 2 53 54 50.9 1.4e-13 1 CL0081
Cotton_A_11216_CDS 214 478 201 481 PF00150.18 Cellulase Domain 14 278 281 75.9 3.5e-21 1 CL0058
Cotton_A_34169_CDS 211 276 210 278 PF01363.21 FYVE Domain 2 66 68 54.8 7.6e-15 1 CL0390
Cotton_A_34169_CDS 394 518 393 520 PF04366.12 Ysc84 Family 2 126 128 118.5 1.5e-34 1 No_clan
Cotton_A_23685_CDS 260 488 260 489 PF02536.14 mTERF Family 1 189 314 70.0 1.6e-19 1 No_clan
Cotton_A_23685_CDS 444 545 437 546 PF02536.14 mTERF Family 215 313 314 53.4 1.8e-14 1 No_clan
Cotton_A_14337_CDS 51 428 51 429 PF03140.15 DUF247 Family 1 396 397 259.1 7.9e-77 1 No_clan
Cotton_A_08245_CDS 140 215 140 228 PF00929.24 RNase_T Family 1 82 165 27.9 2.9e-06 1 CL0219
Cotton_A_35057_CDS 4 63 1 63 PF03006.20 HlyIII Family 38 98 224 52.9 4.1e-14 1 CL0192
Cotton_A_00572_CDS 181 349 181 350 PF11891.8 RETICULATA-like Family 1 176 177 202.0 6.5e-60 1 No_clan
Cotton_A_00572_CDS 511 704 511 715 PF00314.17 Thaumatin Domain 1 198 214 222.9 3.6e-66 1 CL0293
Cotton_A_10607_CDS 72 339 71 340 PF02934.15 GatB_N Domain 2 272 273 333.3 1e-99 1 CL0286
Cotton_A_10607_CDS 378 441 378 441 PF02637.18 GatB_Yqey Domain 1 64 148 57.5 1.4e-15 1 CL0279
Cotton_A_03312_CDS 1 90 1 91 PF00153.27 Mito_carr Family 11 96 97 78.5 2.7e-22 1 No_clan
Cotton_A_03312_CDS 97 192 96 195 PF00153.27 Mito_carr Family 2 94 97 85.7 1.6e-24 1 No_clan
Cotton_A_03312_CDS 199 283 197 289 PF00153.27 Mito_carr Family 4 91 97 58.5 4.8e-16 1 No_clan
Cotton_A_30709_CDS 2 122 1 125 PF00566.18 RabGAP-TBC Family 91 212 215 105.0 4.3e-30 1 No_clan
Cotton_A_15380_CDS 292 551 291 816 PF00443.29 UCH Family 2 146 257 143.0 1.1e-41 1 CL0125
Cotton_A_09564_CDS 41 311 40 311 PF05910.12 DUF868 Family 2 279 279 276.0 3.9e-82 1 No_clan
Cotton_A_17397_CDS 5 122 3 124 PF00891.18 Methyltransf_2 Domain 72 205 210 84.6 5.8e-24 1 CL0063
Cotton_A_19116_CDS 85 259 84 261 PF00702.26 Hydrolase Domain 2 208 210 58.3 1.3e-15 1 CL0137
Cotton_A_29202_CDS 11 137 11 137 PF02365.15 NAM Family 1 126 126 130.3 7.5e-38 1 No_clan
Cotton_A_22073_CDS 236 477 236 477 PF07059.12 DUF1336 Family 1 229 229 215.1 1.4e-63 1 No_clan
Cotton_A_30643_CDS 41 153 39 155 PF07732.15 Cu-oxidase_3 Domain 3 117 119 137.3 2.4e-40 1 CL0026
Cotton_A_30643_CDS 166 316 165 318 PF00394.22 Cu-oxidase Domain 2 157 159 142.6 1.1e-41 1 CL0026
Cotton_A_30643_CDS 438 559 417 561 PF07731.14 Cu-oxidase_2 Domain 23 135 137 140.0 4e-41 1 CL0026
Cotton_A_02881_CDS 55 166 53 173 PF01569.21 PAP2 Family 3 124 136 51.0 1.2e-13 1 CL0525
Cotton_A_05423_CDS 99 160 98 161 PF05617.11 Prolamin_like Domain 2 70 71 33.3 4e-08 1 CL0482
Cotton_A_18752_CDS 42 91 41 92 PF00847.20 AP2 Domain 2 53 54 47.9 1.1e-12 1 CL0081
Cotton_A_27279_CDS 113 151 103 154 PF01425.21 Amidase Family 132 170 451 44.4 1.1e-11 1 No_clan
Cotton_A_31273_CDS 7 130 7 130 PF00241.20 Cofilin_ADF Domain 1 121 121 118.4 1.5e-34 1 CL0092
Cotton_A_21320_CDS 22 112 18 115 PF00153.27 Mito_carr Family 7 94 97 90.7 4.1e-26 1 No_clan
Cotton_A_21320_CDS 121 213 119 214 PF00153.27 Mito_carr Family 3 96 97 80.0 9.1e-23 1 No_clan
Cotton_A_21320_CDS 225 313 219 315 PF00153.27 Mito_carr Family 7 94 97 80.3 7.4e-23 1 No_clan
Cotton_A_04883_CDS 1 222 1 222 PF05695.12 DUF825 Family 97 318 1486 495.5 2.7e-148 1 No_clan
Cotton_A_10651_CDS 37 176 36 176 PF05832.12 DUF846 Family 2 139 139 163.2 3.5e-48 1 No_clan
Cotton_A_16564_CDS 79 408 79 411 PF00295.17 Glyco_hydro_28 Domain 1 321 325 274.2 1.3e-81 1 CL0268
Cotton_A_23942_CDS 28 77 27 78 PF00847.20 AP2 Domain 2 53 54 43.4 2.9e-11 1 CL0081
Cotton_A_11572_CDS 15 182 15 182 PF09768.9 Peptidase_M76 Family 1 171 171 196.4 3e-58 1 CL0126
Cotton_A_01687_CDS 97 297 94 317 PF00685.27 Sulfotransfer_1 Domain 6 204 267 25.9 6.2e-06 1 CL0023
Cotton_A_06219_CDS 157 530 157 530 PF14700.6 RPOL_N Domain 1 336 336 267.4 2.1e-79 1 No_clan
Cotton_A_06219_CDS 653 1044 653 1044 PF00940.19 RNA_pol Family 1 414 414 530.6 2.4e-159 1 No_clan
Cotton_A_25103_CDS 79 215 58 241 PF04893.17 Yip1 Domain 18 128 172 32.1 8.7e-08 1 CL0112
Cotton_A_25103_CDS 232 475 231 475 PF00696.28 AA_kinase Family 3 241 241 130.6 6.7e-38 1 No_clan
Cotton_A_25103_CDS 511 771 503 784 PF00171.22 Aldedh Family 32 282 462 25.9 3.2e-06 1 CL0099
Cotton_A_08058_CDS 290 584 290 584 PF00069.25 Pkinase Domain 1 264 264 249.6 3.3e-74 1 CL0016
Cotton_A_16860_CDS 175 371 164 372 PF12146.8 Hydrolase_4 Family 67 238 239 29.1 5.5e-07 1 CL0028
Cotton_A_16860_CDS 487 564 433 587 PF03982.13 DAGAT Family 116 196 297 32.4 4.4e-08 1 CL0228
Cotton_A_00186_CDS 222 384 220 397 PF00852.19 Glyco_transf_10 Family 3 163 177 118.1 3.4e-34 1 CL0113
Cotton_A_22688_CDS 19 254 15 255 PF13561.6 adh_short_C2 Domain 8 231 234 134.3 4.9e-39 1 CL0063
Cotton_A_33582_CDS 72 170 72 170 PF04526.13 DUF568 Family 1 101 101 102.9 1.3e-29 1 No_clan
Cotton_A_33582_CDS 191 315 190 319 PF03188.16 Cytochrom_B561 Family 2 130 137 25.1 1.6e-05 1 CL0328
Cotton_A_27042_CDS 180 258 178 264 PF00439.25 Bromodomain Domain 3 78 84 53.2 2.3e-14 1 No_clan
Cotton_A_27042_CDS 656 782 655 786 PF03004.14 Transposase_24 Family 2 137 142 98.4 3.8e-28 1 No_clan
Cotton_A_34410_CDS 25 123 22 127 PF00361.20 Proton_antipo_M Family 191 290 293 70.5 1.3e-19 1 CL0425
Cotton_A_07344_CDS 33 72 32 72 PF08263.12 LRRNT_2 Family 2 41 41 29.5 6.6e-07 1 No_clan
Cotton_A_07344_CDS 320 377 317 377 PF13855.6 LRR_8 Repeat 4 61 61 36.1 4e-09 1 CL0022
Cotton_A_07344_CDS 509 568 509 569 PF13855.6 LRR_8 Repeat 1 60 61 28.5 9.6e-07 1 CL0022
Cotton_A_07344_CDS 808 1075 807 1078 PF00069.25 Pkinase Domain 2 259 264 164.8 2.5e-48 1 CL0016
Cotton_A_28230_CDS 109 364 109 367 PF12697.7 Abhydrolase_6 Domain 1 217 220 69.4 6.5e-19 1 CL0028
Cotton_A_13932_CDS 370 522 370 526 PF00004.29 AAA Domain 1 128 132 47.2 2.8e-12 1 CL0023
Cotton_A_13932_CDS 686 818 686 819 PF00004.29 AAA Domain 1 131 132 158.2 1.3e-46 1 CL0023
Cotton_A_16501_CDS 14 86 14 86 PF07765.12 KIP1 Family 1 74 74 124.4 1.4e-36 1 No_clan
Cotton_A_08449_CDS 66 115 66 117 PF16320.5 Ribosomal_L12_N Domain 1 47 48 52.5 3e-14 1 No_clan
Cotton_A_08449_CDS 126 192 126 193 PF00542.19 Ribosomal_L12 Domain 1 66 67 85.6 2.1e-24 1 No_clan
Cotton_A_21557_CDS 149 504 148 504 PF03600.16 CitMHS Family 2 300 300 100.6 8.8e-29 1 CL0182
Cotton_A_07725_CDS 42 199 41 199 PF04043.15 PMEI Domain 2 154 154 116.0 1.9e-33 1 No_clan
Cotton_A_19489_CDS 24 104 24 104 PF04000.15 Sas10_Utp3 Family 1 87 87 63.4 2.2e-17 1 No_clan
Cotton_A_12922_CDS 23 123 23 129 PF00361.20 Proton_antipo_M Family 1 99 293 75.4 4.3e-21 1 CL0425
Cotton_A_07182_CDS 6 90 6 90 PF01780.19 Ribosomal_L37ae Family 1 85 85 133.9 1.6e-39 1 CL0167
Cotton_A_08632_CDS 35 244 35 244 PF01734.22 Patatin Family 1 204 204 86.5 2.7e-24 1 CL0323
Cotton_A_08632_CDS 398 605 397 605 PF01734.22 Patatin Family 2 204 204 72.9 4e-20 1 CL0323
Cotton_A_09753_CDS 3 36 3 37 PF04419.14 4F5 Family 1 37 38 22.8 0.00013 1 CL0361
Cotton_A_09753_CDS 39 76 39 76 PF12907.7 zf-met2 Family 1 38 38 75.0 3.7e-21 1 CL0361
Cotton_A_35427_CDS 30 269 30 269 PF01370.21 Epimerase Family 1 241 241 154.0 4.6e-45 1 CL0063
Cotton_A_20197_CDS 1 187 1 199 PF11805.8 DUF3326 Family 46 232 337 269.9 2.4e-80 1 No_clan
Cotton_A_39199_CDS 69 355 39 358 PF00150.18 Cellulase Domain 22 277 281 83.6 1.6e-23 1 CL0058
Cotton_A_01210_CDS 29 108 29 109 PF13774.6 Longin Domain 1 83 84 80.1 9.2e-23 1 No_clan
Cotton_A_01210_CDS 124 211 123 211 PF00957.21 Synaptobrevin Family 2 89 89 105.5 9.2e-31 1 CL0445
Cotton_A_38948_CDS 136 420 136 420 PF00069.25 Pkinase Domain 1 264 264 230.4 2.3e-68 1 CL0016
Cotton_A_30332_CDS 42 227 22 228 PF08167.12 RIX1 Domain 15 187 188 127.4 5.3e-37 1 CL0020
Cotton_A_09113_CDS 18 469 15 486 PF01602.20 Adaptin_N Family 5 454 524 303.0 3.6e-90 1 CL0020
Cotton_A_09113_CDS 669 803 669 804 PF07718.12 Coatamer_beta_C Domain 1 139 140 191.8 4.8e-57 1 CL0159
Cotton_A_09113_CDS 809 936 809 936 PF14806.6 Coatomer_b_Cpla Domain 1 128 128 192.6 2.1e-57 1 CL0545
Cotton_A_13201_CDS 11 44 11 45 PF08880.11 QLQ Domain 1 34 35 55.9 2.6e-15 1 No_clan
Cotton_A_13201_CDS 67 109 67 109 PF08879.10 WRC Domain 1 43 43 74.2 4.6e-21 1 No_clan
Cotton_A_12615_CDS 9 128 9 131 PF01408.22 GFO_IDH_MocA Family 1 117 120 72.3 5.8e-20 1 CL0063
Cotton_A_11220_CDS 84 134 82 134 PF04570.14 zf-FLZ Domain 4 54 54 87.3 3.4e-25 1 CL0175
Cotton_A_17517_CDS 77 133 76 134 PF03106.15 WRKY Domain 2 58 59 87.8 3.9e-25 1 CL0274
Cotton_A_38919_CDS 144 227 143 228 PF14693.6 Ribosomal_TL5_C Domain 2 84 86 71.0 7.9e-20 1 No_clan
Cotton_A_06764_CDS 75 360 75 360 PF13292.6 DXP_synthase_N Family 1 273 273 368.9 1.3e-110 1 CL0254
Cotton_A_06764_CDS 398 558 395 560 PF02779.24 Transket_pyr Domain 4 174 178 136.8 6.2e-40 1 CL0254
Cotton_A_06764_CDS 576 700 576 700 PF02780.20 Transketolase_C Domain 1 124 124 94.2 5.2e-27 1 CL0591
Cotton_A_21560_CDS 54 168 41 172 PF06658.12 DUF1168 Family 14 128 136 97.9 4.1e-28 1 No_clan
Cotton_A_33572_CDS 35 214 30 215 PF00722.21 Glyco_hydro_16 Domain 6 176 177 185.3 6.8e-55 1 CL0004
Cotton_A_33572_CDS 253 289 243 289 PF06955.12 XET_C Family 10 47 47 52.7 2.7e-14 1 CL0004
Cotton_A_20861_CDS 21 100 21 100 PF17927.1 Ins134_P3_kin_N Domain 1 80 80 93.1 1.1e-26 1 CL0483
Cotton_A_20861_CDS 122 194 119 194 PF05770.11 Ins134_P3_kin Domain 4 76 201 99.1 2.4e-28 1 CL0179
Cotton_A_10394_CDS 36 127 14 129 PF00069.25 Pkinase Domain 23 126 264 56.5 2.6e-15 1 CL0016
Cotton_A_29617_CDS 274 537 271 540 PF00069.25 Pkinase Domain 4 260 264 170.9 3.4e-50 1 CL0016
Cotton_A_29420_CDS 8 167 7 167 PF04690.13 YABBY Family 2 162 162 199.6 4.5e-59 1 CL0114
Cotton_A_31143_CDS 56 315 56 316 PF00685.27 Sulfotransfer_1 Domain 1 266 267 210.2 3.7e-62 1 CL0023
Cotton_A_19679_CDS 76 537 76 537 PF10433.9 MMS1_N Domain 1 489 489 380.0 1.5e-113 1 No_clan
Cotton_A_19679_CDS 745 1057 743 1057 PF03178.15 CPSF_A Family 3 322 322 269.9 3.1e-80 1 CL0186
Cotton_A_37469_CDS 51 467 51 470 PF00067.22 p450 Domain 1 434 463 246.8 3.8e-73 1 No_clan
Cotton_A_07649_CDS 33 202 31 206 PF01073.19 3Beta_HSD Family 57 228 280 34.3 1.2e-08 1 CL0063
Cotton_A_31340_CDS 25 124 3 127 PF00067.22 p450 Domain 200 298 463 41.6 6.6e-11 1 No_clan
Cotton_A_19267_CDS 88 317 87 317 PF01182.20 Glucosamine_iso Domain 2 225 225 241.0 1.4e-71 1 CL0246
Cotton_A_27176_CDS 85 164 84 166 PF07885.16 Ion_trans_2 Family 2 77 79 59.5 2.4e-16 1 CL0030
Cotton_A_27176_CDS 212 280 210 284 PF07885.16 Ion_trans_2 Family 3 74 79 44.1 1.5e-11 1 CL0030
Cotton_A_27176_CDS 303 321 302 327 PF13202.6 EF-hand_5 Domain 2 21 25 17.4 0.0022 1 CL0220
Cotton_A_27176_CDS 342 356 342 358 PF13202.6 EF-hand_5 Domain 3 17 25 12.1 0.11 1 CL0220
Cotton_A_10716_CDS 132 148 131 155 PF13516.6 LRR_6 Repeat 2 17 24 8.9 1.6 1 CL0022
Cotton_A_10716_CDS 183 206 182 206 PF13516.6 LRR_6 Repeat 2 24 24 10.2 0.67 1 CL0022
Cotton_A_40316_CDS 17 88 9 123 PF14226.6 DIOX_N Family 9 77 118 39.7 7.2e-10 1 CL0029
Cotton_A_40316_CDS 175 260 155 262 PF03171.20 2OG-FeII_Oxy Domain 12 99 101 45.2 1e-11 1 CL0029
Cotton_A_33698_CDS 164 198 164 199 PF00320.27 GATA Domain 1 35 36 61.0 5.8e-17 1 CL0167
Cotton_A_37695_CDS 36 411 36 411 PF00282.19 Pyridoxal_deC Domain 1 375 375 367.2 7.5e-110 1 CL0061
Cotton_A_03663_CDS 166 261 162 297 PF13589.6 HATPase_c_3 Domain 5 98 137 52.9 3.3e-14 1 CL0025
Cotton_A_03663_CDS 396 540 396 540 PF17942.1 Morc6_S5 Family 1 139 139 198.7 3.7e-59 1 CL0329
Cotton_A_15818_CDS 28 202 28 220 PF00857.20 Isochorismatase Family 1 156 175 98.6 4.4e-28 1 No_clan
Cotton_A_01971_CDS 2 141 2 144 PF03194.15 LUC7 Family 1 138 251 157.8 3.8e-46 1 No_clan
Cotton_A_20906_CDS 26 485 26 485 PF00759.19 Glyco_hydro_9 Domain 1 411 411 474.4 4.1e-142 1 CL0059
Cotton_A_20906_CDS 532 609 532 611 PF09478.10 CBM49 Domain 1 80 81 95.7 1.5e-27 1 CL0203
Cotton_A_06318_CDS 26 149 23 172 PF00407.19 Bet_v_1 Domain 5 128 151 44.5 1.4e-11 1 CL0209
Cotton_A_01518_CDS 66 84 65 84 PF00612.27 IQ Motif 3 21 21 30.3 1.9e-07 1 CL0220
Cotton_A_17172_CDS 51 92 14 93 PF06404.12 PSK Family 41 89 90 56.8 3.4e-15 1 No_clan
Cotton_A_15182_CDS 1 85 1 85 PF08285.11 DPM3 Family 1 91 91 77.3 7.6e-22 1 No_clan
Cotton_A_25758_CDS 28 300 28 300 PF04086.13 SRP-alpha_N Family 1 291 291 238.8 1.1e-70 1 No_clan
Cotton_A_25758_CDS 317 385 314 390 PF02881.19 SRP54_N Domain 5 74 75 31.8 1.2e-07 1 No_clan
Cotton_A_25758_CDS 416 620 415 621 PF00448.22 SRP54 Domain 2 195 196 188.2 1.2e-55 1 CL0023
Cotton_A_34636_CDS 113 142 113 143 PF01535.20 PPR Family 1 30 31 10.4 0.64 1 CL0020
Cotton_A_34636_CDS 145 192 145 194 PF13041.6 PPR_2 Repeat 1 48 50 58.6 5e-16 1 CL0020
Cotton_A_34636_CDS 220 248 219 249 PF01535.20 PPR Family 2 30 31 15.3 0.017 1 CL0020
Cotton_A_34636_CDS 251 300 251 300 PF13041.6 PPR_2 Repeat 1 50 50 41.5 1.1e-10 1 CL0020
Cotton_A_34636_CDS 356 404 356 405 PF13041.6 PPR_2 Repeat 1 49 50 42.6 5.2e-11 1 CL0020
Cotton_A_34636_CDS 426 472 426 474 PF13041.6 PPR_2 Repeat 1 47 50 46.5 3.1e-12 1 CL0020
Cotton_A_37226_CDS 6 265 6 268 PF00656.22 Peptidase_C14 Domain 1 245 248 132.5 2.3e-38 1 CL0093
Cotton_A_05208_CDS 46 314 46 315 PF14500.6 MMS19_N Domain 1 260 261 275.8 3.7e-82 1 No_clan
Cotton_A_05208_CDS 611 1077 607 1079 PF12460.8 MMS19_C Domain 23 421 423 137.2 8.3e-40 1 CL0020
Cotton_A_23529_CDS 18 82 18 82 PF08542.11 Rep_fac_C Domain 1 69 88 31.4 1.8e-07 1 CL0604
Cotton_A_23661_CDS 164 300 162 300 PF13365.6 Trypsin_2 Domain 3 150 150 84.1 1.8e-23 1 CL0124
Cotton_A_23661_CDS 340 440 339 440 PF13180.6 PDZ_2 Domain 2 82 82 33.2 4.8e-08 1 CL0466
Cotton_A_23661_CDS 447 588 447 588 PF17815.1 PDZ_3 Domain 1 145 145 148.8 9.4e-44 1 CL0466
Cotton_A_09794_CDS 176 204 174 204 PF01535.20 PPR Family 3 31 31 20.5 0.00039 1 CL0020
Cotton_A_09794_CDS 213 235 203 235 PF12854.7 PPR_1 Repeat 12 34 34 25.5 7.9e-06 1 CL0020
Cotton_A_09794_CDS 244 273 243 273 PF01535.20 PPR Family 2 31 31 20.2 0.00048 1 CL0020
Cotton_A_09794_CDS 275 324 275 324 PF13041.6 PPR_2 Repeat 1 50 50 61.4 6.7e-17 1 CL0020
Cotton_A_09794_CDS 346 385 345 392 PF13041.6 PPR_2 Repeat 2 41 50 45.8 5e-12 1 CL0020
Cotton_A_09794_CDS 394 413 393 413 PF01535.20 PPR Family 12 31 31 9.5 1.3 1 CL0020
Cotton_A_09794_CDS 415 462 415 464 PF13041.6 PPR_2 Repeat 1 48 50 35.0 1.2e-08 1 CL0020
Cotton_A_09794_CDS 526 552 525 555 PF01535.20 PPR Family 2 28 31 13.1 0.09 1 CL0020
Cotton_A_27574_CDS 17 264 16 276 PF16913.5 PUNUT Family 2 249 322 268.9 5.8e-80 1 CL0184
Cotton_A_06214_CDS 171 421 170 421 PF00454.27 PI3_PI4_kinase Family 2 250 250 163.9 5.5e-48 1 CL0016
Cotton_A_06022_CDS 25 600 24 600 PF02705.16 K_trans Family 2 534 534 650.9 1.4e-195 1 CL0062
Cotton_A_08077_CDS 9 735 8 736 PF05691.12 Raffinose_syn Family 3 749 750 867.2 7.6e-261 1 CL0058
Cotton_A_08302_CDS 60 266 58 267 PF01738.18 DLH Domain 3 216 217 106.3 1.6e-30 1 CL0028
Cotton_A_11362_CDS 18 139 17 139 PF00903.25 Glyoxalase Domain 2 128 128 39.0 8.1e-10 1 CL0104
Cotton_A_37623_CDS 31 187 31 187 PF04862.12 DUF642 Domain 1 157 157 189.6 3e-56 1 CL0202
Cotton_A_37623_CDS 198 366 198 366 PF04862.12 DUF642 Domain 1 157 157 60.3 1.9e-16 1 CL0202
Cotton_A_00735_CDS 50 323 48 324 PF01095.19 Pectinesterase Family 4 297 298 247.3 1.3e-73 1 CL0268
Cotton_A_29858_CDS 12 70 11 70 PF01424.22 R3H Domain 3 60 60 41.0 1.4e-10 1 No_clan
Cotton_A_29858_CDS 180 333 176 339 PF00270.29 DEAD Domain 9 170 176 34.9 1.2e-08 1 CL0023
Cotton_A_29858_CDS 525 653 519 654 PF00271.31 Helicase_C Family 7 110 111 52.0 7.7e-14 1 CL0023
Cotton_A_29858_CDS 718 802 718 841 PF04408.23 HA2 Domain 1 78 108 56.7 2.5e-15 1 No_clan
Cotton_A_01667_CDS 121 206 115 207 PF04884.14 DUF647 Family 11 100 241 81.4 7.7e-23 1 No_clan
Cotton_A_01667_CDS 208 301 206 302 PF04884.14 DUF647 Family 151 240 241 65.3 6.3e-18 1 No_clan
Cotton_A_26764_CDS 48 190 47 191 PF02469.22 Fasciclin Domain 2 127 128 22.4 0.00011 1 No_clan
Cotton_A_26764_CDS 218 353 217 353 PF02469.22 Fasciclin Domain 2 128 128 62.4 4.7e-17 1 No_clan
Cotton_A_20268_CDS 42 101 42 103 PF13921.6 Myb_DNA-bind_6 Domain 1 58 60 56.3 2.7e-15 1 CL0123
Cotton_A_06053_CDS 416 672 414 676 PF00069.25 Pkinase Domain 3 258 264 139.3 1.4e-40 1 CL0016
Cotton_A_38191_CDS 10 57 10 57 PF00319.18 SRF-TF Domain 1 48 48 90.4 3.6e-26 1 No_clan
Cotton_A_38191_CDS 86 171 80 172 PF01486.17 K-box Family 7 92 93 92.5 1.4e-26 1 No_clan
Cotton_A_17862_CDS 270 374 268 376 PF07522.14 DRMBL Domain 5 108 110 77.6 7.6e-22 1 CL0398
Cotton_A_17862_CDS 741 917 741 917 PF04675.14 DNA_ligase_A_N Family 1 173 173 129.7 1.4e-37 1 No_clan
Cotton_A_17862_CDS 987 1204 987 1204 PF01068.21 DNA_ligase_A_M Domain 1 204 204 127.4 5.4e-37 1 CL0078
Cotton_A_17862_CDS 1230 1338 1229 1339 PF04679.15 DNA_ligase_A_C Family 2 98 99 72.2 4.1e-20 1 CL0021
Cotton_A_30169_CDS 1 48 1 48 PF03936.16 Terpene_synth_C Domain 220 267 267 52.1 5.8e-14 1 CL0613
Cotton_A_21023_CDS 10 115 10 126 PF03998.13 Utp11 Family 1 105 245 128.4 4.1e-37 1 CL0037
Cotton_A_23458_CDS 41 156 13 167 PF13563.6 2_5_RNA_ligase2 Family 25 138 152 50.3 2.4e-13 1 CL0247
Cotton_A_08146_CDS 31 341 31 341 PF00069.25 Pkinase Domain 1 264 264 230.2 2.7e-68 1 CL0016
Cotton_A_10296_CDS 28 332 27 333 PF01301.19 Glyco_hydro_35 Domain 2 315 316 391.4 3.9e-117 1 CL0058
Cotton_A_10296_CDS 340 411 340 411 PF17834.1 GHD Domain 1 72 72 90.5 5e-26 1 CL0369
Cotton_A_28428_CDS 55 517 55 520 PF00067.22 p450 Domain 1 460 463 345.6 4.1e-103 1 No_clan
Cotton_A_38018_CDS 166 237 166 237 PF02713.14 DUF220 Family 1 73 73 103.4 4.9e-30 1 No_clan
Cotton_A_09520_CDS 107 376 100 377 PF00933.21 Glyco_hydro_3 Domain 79 318 319 109.8 1.6e-31 1 CL0058
Cotton_A_09520_CDS 418 648 418 648 PF01915.22 Glyco_hydro_3_C Domain 1 204 204 164.7 2.6e-48 1 No_clan
Cotton_A_09520_CDS 714 782 714 783 PF14310.6 Fn3-like Family 1 69 71 25.9 8.1e-06 1 CL0159
Cotton_A_30038_CDS 2 154 1 156 PF00225.23 Kinesin Domain 173 331 333 190.5 3.6e-56 1 CL0023
Cotton_A_16493_CDS 43 132 43 132 PF00447.17 HSF_DNA-bind Domain 1 96 96 101.5 3e-29 1 CL0123
Cotton_A_23557_CDS 30 70 29 70 PF08263.12 LRRNT_2 Family 2 41 41 46.9 2.4e-12 1 No_clan
Cotton_A_23557_CDS 106 165 105 165 PF13855.6 LRR_8 Repeat 2 61 61 31.1 1.4e-07 1 CL0022
Cotton_A_08056_CDS 142 202 142 202 PF13855.6 LRR_8 Repeat 1 61 61 30.2 2.7e-07 1 CL0022
Cotton_A_08056_CDS 493 751 488 753 PF07714.17 Pkinase_Tyr Domain 6 257 259 91.7 4.6e-26 1 CL0016
Cotton_A_13926_CDS 63 97 52 97 PF13456.6 RVT_3 Domain 90 124 124 22.5 7.9e-05 1 CL0219
Cotton_A_18569_CDS 15 60 4 60 PF06246.12 Isy1 Family 209 255 255 26.1 5.7e-06 1 No_clan
Cotton_A_00449_CDS 32 261 26 271 PF00139.19 Lectin_legB Domain 3 238 249 200.9 2.4e-59 1 CL0004
Cotton_A_00449_CDS 375 641 373 644 PF00069.25 Pkinase Domain 3 260 264 173.3 6.2e-51 1 CL0016
Cotton_A_37343_CDS 4 68 1 68 PF11820.8 DUF3339 Family 3 67 67 111.5 1.6e-32 1 No_clan
Cotton_A_06182_CDS 3 186 2 191 PF03721.14 UDPG_MGDP_dh_N Domain 2 183 187 226.1 2.5e-67 1 CL0063
Cotton_A_06182_CDS 210 304 210 305 PF00984.19 UDPG_MGDP_dh Domain 1 93 94 111.0 2.5e-32 1 CL0106
Cotton_A_06182_CDS 328 452 328 452 PF03720.15 UDPG_MGDP_dh_C Domain 1 105 105 121.4 2e-35 1 CL0039
Cotton_A_22653_CDS 27 125 24 126 PF13947.6 GUB_WAK_bind Domain 4 105 106 51.7 1.2e-13 1 No_clan
Cotton_A_32239_CDS 28 167 20 167 PF00656.22 Peptidase_C14 Domain 104 248 248 34.4 2.1e-08 1 CL0093
Cotton_A_28102_CDS 59 104 59 104 PF12906.7 RINGv Domain 1 48 48 46.0 4.3e-12 1 CL0229
Cotton_A_28102_CDS 110 221 110 221 PF12428.8 DUF3675 Family 1 119 119 124.6 2.8e-36 1 No_clan
Cotton_A_15612_CDS 129 176 129 177 PF00628.29 PHD Domain 1 51 52 35.0 9.4e-09 1 CL0390
Cotton_A_15612_CDS 226 336 226 352 PF01448.24 ELM2 Family 1 39 53 26.7 7e-06 1 No_clan
Cotton_A_04843_CDS 45 191 44 191 PF04043.15 PMEI Domain 2 154 154 94.6 7.1e-27 1 No_clan
Cotton_A_04843_CDS 246 328 246 335 PF01095.19 Pectinesterase Family 1 83 298 99.0 2e-28 1 CL0268
Cotton_A_04843_CDS 352 567 348 567 PF01095.19 Pectinesterase Family 82 298 298 344.9 2.5e-103 1 CL0268
Cotton_A_22085_CDS 16 89 15 91 PF02519.14 Auxin_inducible Family 2 84 90 43.7 2.2e-11 1 No_clan
Cotton_A_36894_CDS 98 143 96 145 PF02518.26 HATPase_c Domain 3 49 112 32.0 1.4e-07 1 CL0025
Cotton_A_21187_CDS 133 183 132 184 PF00847.20 AP2 Domain 2 53 54 50.8 1.5e-13 1 CL0081
Cotton_A_13810_CDS 52 91 50 92 PF08263.12 LRRNT_2 Family 3 40 41 35.1 1.2e-08 1 No_clan
Cotton_A_13810_CDS 167 226 166 226 PF13855.6 LRR_8 Repeat 2 61 61 30.4 2.5e-07 1 CL0022
Cotton_A_13810_CDS 247 305 245 305 PF13855.6 LRR_8 Repeat 3 61 61 37.8 1.2e-09 1 CL0022
Cotton_A_13810_CDS 552 816 548 816 PF07714.17 Pkinase_Tyr Domain 5 259 259 142.8 1.1e-41 1 CL0016
Cotton_A_14520_CDS 122 366 122 366 PF07250.11 Glyoxal_oxid_N Family 1 240 240 303.9 5.9e-91 1 No_clan
Cotton_A_14520_CDS 530 631 524 631 PF09118.11 DUF1929 Domain 6 96 96 74.1 8.2e-21 1 CL0159
Cotton_A_07573_CDS 111 250 110 252 PF03634.13 TCP Family 2 154 156 140.3 7.5e-41 1 No_clan
Cotton_A_06056_CDS 40 105 40 105 PF16209.5 PhoLip_ATPase_N Family 1 67 67 80.6 4.9e-23 1 No_clan
Cotton_A_06056_CDS 516 619 515 622 PF13246.6 Cation_ATPase Family 2 87 91 47.3 1.7e-12 1 CL0137
Cotton_A_06056_CDS 874 1124 874 1125 PF16212.5 PhoLip_ATPase_C Family 1 248 249 280.5 1.4e-83 1 No_clan
Cotton_A_17266_CDS 18 122 17 132 PF03321.13 GH3 Family 2 105 527 120.0 1.3e-34 1 CL0378
Cotton_A_38879_CDS 38 292 35 292 PF00069.25 Pkinase Domain 4 264 264 172.0 1.6e-50 1 CL0016
Cotton_A_05354_CDS 84 120 82 120 PF00400.32 WD40 Repeat 3 38 38 26.6 7.3e-06 1 CL0186
Cotton_A_05354_CDS 126 164 125 164 PF00400.32 WD40 Repeat 2 38 38 22.7 0.00013 1 CL0186
Cotton_A_05354_CDS 170 208 168 208 PF00400.32 WD40 Repeat 3 38 38 27.3 4.5e-06 1 CL0186
Cotton_A_05354_CDS 213 249 212 250 PF00400.32 WD40 Repeat 2 37 38 36.4 6e-09 1 CL0186
Cotton_A_05354_CDS 312 756 312 757 PF04053.14 Coatomer_WDAD Family 1 444 445 549.1 8.8e-165 1 CL0186
Cotton_A_39139_CDS 71 364 70 364 PF01095.19 Pectinesterase Family 2 298 298 246.8 1.9e-73 1 CL0268
Cotton_A_13051_CDS 9 640 9 640 PF03547.18 Mem_trans Family 1 387 387 648.6 2.1e-195 1 CL0064
Cotton_A_10658_CDS 40 456 21 462 PF11715.8 Nup160 Family 24 466 537 99.2 2.3e-28 1 CL0186
Cotton_A_10658_CDS 496 689 496 689 PF17238.2 DUF5311 Domain 1 194 194 307.3 4.5e-92 1 No_clan
Cotton_A_26495_CDS 52 292 52 293 PF12697.7 Abhydrolase_6 Domain 1 219 220 46.3 7.6e-12 1 CL0028
Cotton_A_33189_CDS 1 187 1 187 PF14009.6 DUF4228 Family 1 179 179 103.5 1.6e-29 1 No_clan
Cotton_A_14590_CDS 354 450 336 450 PF02373.22 JmjC Domain 23 114 114 57.3 1.9e-15 1 CL0029
Cotton_A_35748_CDS 18 73 18 78 PF00076.22 RRM_1 Domain 1 55 70 56.7 1.5e-15 1 CL0221
Cotton_A_05647_CDS 160 223 159 227 PF02325.17 YGGT Family 3 64 69 58.0 9.2e-16 1 No_clan
Cotton_A_14308_CDS 3 211 3 212 PF00091.25 Tubulin Domain 1 196 197 233.8 1.9e-69 1 CL0566
Cotton_A_14308_CDS 261 382 261 383 PF03953.17 Tubulin_C Domain 1 125 126 137.2 3.1e-40 1 CL0442
Cotton_A_15733_CDS 133 193 133 194 PF03106.15 WRKY Domain 1 58 59 84.6 4.1e-24 1 CL0274
Cotton_A_32256_CDS 39 191 38 192 PF03018.14 Dirigent Family 2 147 148 125.8 1.1e-36 1 CL0650
Cotton_A_31112_CDS 37 88 35 88 PF14416.6 PMR5N Domain 3 53 53 84.8 3.8e-24 1 No_clan
Cotton_A_31112_CDS 89 355 89 356 PF13839.6 PC-Esterase Family 1 282 283 318.1 6.5e-95 1 CL0264
Cotton_A_06956_CDS 96 142 95 143 PF13041.6 PPR_2 Repeat 2 49 50 48.1 9.7e-13 1 CL0020
Cotton_A_06956_CDS 197 243 196 245 PF13041.6 PPR_2 Repeat 2 48 50 51.1 1.1e-13 1 CL0020
Cotton_A_06956_CDS 272 294 272 297 PF01535.20 PPR Family 4 26 31 11.2 0.35 1 CL0020
Cotton_A_06956_CDS 301 346 298 347 PF13041.6 PPR_2 Repeat 4 49 50 32.8 5.6e-08 1 CL0020
Cotton_A_06956_CDS 374 395 374 397 PF01535.20 PPR Family 4 25 31 14.9 0.023 1 CL0020
Cotton_A_06956_CDS 399 447 399 448 PF13041.6 PPR_2 Repeat 1 49 50 43.6 2.5e-11 1 CL0020
Cotton_A_06956_CDS 474 495 473 497 PF01535.20 PPR Family 2 23 31 12.7 0.12 1 CL0020
Cotton_A_06956_CDS 573 660 573 662 PF14432.6 DYW_deaminase Family 1 96 127 59.6 2.7e-16 1 CL0109
Cotton_A_15808_CDS 122 251 118 252 PF17207.3 MCM_OB Domain 5 124 126 82.9 1.6e-23 1 CL0021
Cotton_A_15808_CDS 309 402 302 427 PF00493.23 MCM Domain 16 109 224 86.8 1.1e-24 1 CL0023
Cotton_A_39837_CDS 8 177 8 179 PF00071.22 Ras Domain 1 160 162 177.7 1.3e-52 1 CL0023
Cotton_A_24368_CDS 55 307 55 310 PF06405.11 RCC_reductase Family 1 250 253 374.6 1.8e-112 1 No_clan
Cotton_A_24368_CDS 330 392 329 393 PF13499.6 EF-hand_7 Domain 2 70 71 56.2 3.5e-15 1 CL0220
Cotton_A_24368_CDS 403 466 402 466 PF13499.6 EF-hand_7 Domain 2 71 71 48.2 1.1e-12 1 CL0220
Cotton_A_07342_CDS 54 555 54 557 PF00118.24 Cpn60_TCP1 Family 1 489 491 285.9 5.3e-85 1 No_clan
Cotton_A_37080_CDS 37 248 36 249 PF00149.28 Metallophos Domain 2 203 204 67.2 2.7e-18 1 CL0163
Cotton_A_15822_CDS 47 226 47 227 PF00350.23 Dynamin_N Domain 1 167 168 181.5 1.3e-53 1 CL0023
Cotton_A_15822_CDS 236 504 236 506 PF01031.20 Dynamin_M Family 1 283 285 290.2 1.4e-86 1 No_clan
Cotton_A_15822_CDS 627 709 624 711 PF02212.18 GED Family 4 86 92 86.6 9.6e-25 1 No_clan
Cotton_A_09132_CDS 118 434 118 434 PF10250.9 O-FucT Family 1 336 336 240.3 4.4e-71 1 CL0113
Cotton_A_02039_CDS 15 361 14 363 PF04563.15 RNA_pol_Rpb2_1 Family 2 201 203 34.0 2e-08 1 No_clan
Cotton_A_02039_CDS 129 315 128 315 PF04561.14 RNA_pol_Rpb2_2 Domain 2 190 190 182.0 8.7e-54 1 No_clan
Cotton_A_02039_CDS 376 444 376 444 PF04565.16 RNA_pol_Rpb2_3 Domain 1 68 68 85.4 2.2e-24 1 No_clan
Cotton_A_02039_CDS 581 979 580 979 PF00562.28 RNA_pol_Rpb2_6 Domain 2 390 390 408.4 3.1e-122 1 CL0410
Cotton_A_02039_CDS 981 1056 981 1058 PF04560.20 RNA_pol_Rpb2_7 Domain 1 85 87 74.5 6.6e-21 1 No_clan
Cotton_A_21007_CDS 81 176 81 177 PF08242.12 Methyltransf_12 Domain 1 98 99 57.5 1.7e-15 1 CL0063
Cotton_A_21007_CDS 316 454 309 480 PF10294.9 Methyltransf_16 Family 11 151 174 57.6 1.3e-15 1 CL0063
Cotton_A_36326_CDS 233 275 232 275 PF13639.6 zf-RING_2 Domain 2 44 44 47.5 1.7e-12 1 CL0229
Cotton_A_11410_CDS 220 535 220 535 PF01501.20 Glyco_transf_8 Family 1 256 256 291.3 6.5e-87 1 CL0110
Cotton_A_29920_CDS 42 79 3 79 PF12734.7 CYSTM Family 4 42 42 34.6 1.7e-08 1 No_clan
Cotton_A_32584_CDS 79 134 77 138 PF00170.21 bZIP_1 Family 5 60 64 33.1 4.6e-08 1 CL0018
Cotton_A_19599_CDS 256 623 254 624 PF03514.14 GRAS Family 3 373 374 447.7 2.9e-134 1 CL0063
Cotton_A_30799_CDS 10 179 10 181 PF07855.12 ATG101 Family 1 152 155 173.8 2.3e-51 1 CL0651
Cotton_A_40169_CDS 8 47 6 47 PF18511.1 F-box_5 Domain 3 42 42 76.2 1.1e-21 1 CL0271
Cotton_A_40169_CDS 66 112 66 112 PF18791.1 Transp_inhibit Family 1 47 47 86.3 6.9e-25 1 No_clan
Cotton_A_40169_CDS 154 170 154 173 PF13516.6 LRR_6 Repeat 1 17 24 11.1 0.32 1 CL0022
Cotton_A_40169_CDS 289 310 288 311 PF13516.6 LRR_6 Repeat 2 23 24 10.8 0.43 1 CL0022
Cotton_A_10770_CDS 347 399 345 405 PF00170.21 bZIP_1 Family 5 57 64 47.0 2e-12 1 CL0018
Cotton_A_33444_CDS 112 279 112 280 PF14299.6 PP2 Family 1 145 146 176.4 3.4e-52 1 No_clan
Cotton_A_38305_CDS 305 328 249 328 PF00400.32 WD40 Repeat 17 38 38 19.0 0.0019 1 CL0186
Cotton_A_37849_CDS 55 110 55 114 PF07939.11 DUF1685 Family 1 57 60 86.8 5.9e-25 1 No_clan
Cotton_A_04874_CDS 84 298 83 298 PF02536.14 mTERF Family 2 188 314 91.2 5.5e-26 1 No_clan
Cotton_A_04874_CDS 251 356 250 357 PF02536.14 mTERF Family 211 313 314 49.3 3.1e-13 1 No_clan
Cotton_A_10832_CDS 49 71 48 74 PF05678.14 VQ Motif 2 24 28 40.5 1.3e-10 1 No_clan
Cotton_A_08866_CDS 4 44 2 49 PF00646.33 F-box Domain 3 42 48 28.7 8.7e-07 1 CL0271
Cotton_A_08866_CDS 305 365 305 365 PF03478.18 DUF295 Domain 1 55 55 44.0 1.2e-11 1 No_clan
Cotton_A_05968_CDS 85 178 84 179 PF00436.25 SSB Domain 2 103 104 67.2 1.1e-18 1 CL0021
Cotton_A_37371_CDS 3 53 2 54 PF01907.19 Ribosomal_L37e Family 2 53 54 92.2 1.6e-26 1 CL0167
Cotton_A_12109_CDS 38 217 4 217 PF00230.20 MIP Family 43 227 227 31.9 1e-07 1 No_clan
Cotton_A_27274_CDS 21 70 9 71 PF04142.15 Nuc_sug_transp Family 255 304 315 52.3 4.7e-14 1 CL0184
Cotton_A_06960_CDS 82 100 82 100 PF08137.12 DVL Family 1 19 19 46.5 2.3e-12 1 No_clan
Cotton_A_32275_CDS 258 388 258 389 PF00781.24 DAGK_cat Family 1 125 126 100.3 5.5e-29 1 CL0240
Cotton_A_16644_CDS 46 501 41 514 PF00067.22 p450 Domain 5 449 463 319.5 3.5e-95 1 No_clan
Cotton_A_00815_CDS 292 562 289 563 PF07714.17 Pkinase_Tyr Domain 5 258 259 104.3 6.4e-30 1 CL0016
Cotton_A_38492_CDS 198 404 197 404 PF14381.6 EDR1 Family 2 200 200 254.9 5e-76 1 CL0125
Cotton_A_26213_CDS 177 217 176 222 PF06221.13 zf-C2HC5 Domain 2 46 54 48.0 8.7e-13 1 No_clan
Cotton_A_39834_CDS 46 131 17 131 PF00583.25 Acetyltransf_1 Family 33 117 117 56.0 4.3e-15 1 CL0257
Cotton_A_20875_CDS 81 540 79 541 PF08801.11 Nucleoporin_N Domain 5 433 434 163.6 6.3e-48 1 CL0186
Cotton_A_20875_CDS 1017 1249 944 1251 PF03177.14 Nucleoporin_C Family 336 594 596 29.9 2.4e-07 1 No_clan
Cotton_A_15097_CDS 104 155 41 155 PF14510.6 ABC_trans_N Domain 31 81 81 46.5 4.1e-12 1 No_clan
Cotton_A_15097_CDS 180 362 180 364 PF00005.27 ABC_tran Domain 1 135 137 47.6 2.3e-12 1 CL0023
Cotton_A_15097_CDS 516 728 515 728 PF01061.24 ABC2_membrane Family 2 210 210 143.1 7.5e-42 1 CL0181
Cotton_A_15097_CDS 733 799 733 799 PF08370.11 PDR_assoc Family 1 65 65 93.1 6.2e-27 1 No_clan
Cotton_A_15097_CDS 879 1031 879 1031 PF00005.27 ABC_tran Domain 1 137 137 70.7 1.7e-19 1 CL0023
Cotton_A_15097_CDS 1177 1389 1176 1390 PF01061.24 ABC2_membrane Family 2 209 210 171.9 1.2e-50 1 CL0181
Cotton_A_35624_CDS 140 367 132 420 PF00933.21 Glyco_hydro_3 Domain 81 291 319 112.3 2.9e-32 1 CL0058
Cotton_A_35624_CDS 462 691 462 691 PF01915.22 Glyco_hydro_3_C Domain 1 204 204 176.3 7.1e-52 1 No_clan
Cotton_A_35624_CDS 762 825 759 828 PF14310.6 Fn3-like Family 5 68 71 41.4 1.2e-10 1 CL0159
Cotton_A_30226_CDS 8 75 8 75 PF00076.22 RRM_1 Domain 1 70 70 30.7 2e-07 1 CL0221
Cotton_A_22065_CDS 129 158 128 158 PF01535.20 PPR Family 2 31 31 22.9 6.7e-05 1 CL0020
Cotton_A_22065_CDS 187 235 187 236 PF13041.6 PPR_2 Repeat 1 49 50 51.1 1.2e-13 1 CL0020
Cotton_A_22065_CDS 289 332 288 336 PF13041.6 PPR_2 Repeat 2 44 50 31.9 1.1e-07 1 CL0020
Cotton_A_22065_CDS 364 388 362 390 PF01535.20 PPR Family 3 27 31 13.0 0.091 1 CL0020
Cotton_A_38878_CDS 1 32 1 37 PF02150.16 RNA_POL_M_15KD Domain 1 30 36 26.1 5.6e-06 1 CL0167
Cotton_A_38878_CDS 70 108 70 108 PF01096.18 TFIIS_C Domain 1 39 39 65.8 2.3e-18 1 CL0167
Cotton_A_22517_CDS 8 555 8 555 PF00862.19 Sucrose_synth Family 1 548 548 958.9 6.4e-289 1 CL0113
Cotton_A_22517_CDS 562 740 558 744 PF00534.20 Glycos_transf_1 Family 5 166 172 107.2 6.3e-31 1 CL0113
Cotton_A_27636_CDS 36 446 36 459 PF00067.22 p450 Domain 1 443 463 195.4 1.5e-57 1 No_clan
Cotton_A_17169_CDS 56 520 56 523 PF00067.22 p450 Domain 1 460 463 321.2 1.1e-95 1 No_clan
Cotton_A_12844_CDS 127 238 127 239 PF03479.15 DUF296 Domain 1 105 107 86.0 2e-24 1 CL0615
Cotton_A_37586_CDS 33 154 18 156 PF00293.28 NUDIX Domain 16 129 131 51.2 1.2e-13 1 CL0261
Cotton_A_17370_CDS 35 150 34 150 PF08240.12 ADH_N Domain 2 109 109 83.0 1.3e-23 1 CL0296
Cotton_A_17370_CDS 192 313 192 315 PF00107.26 ADH_zinc_N Family 1 128 130 57.0 1.8e-15 1 CL0063
Cotton_A_27785_CDS 7 131 6 133 PF04049.13 ANAPC8 Family 2 114 140 113.5 7.7e-33 1 CL0020
Cotton_A_23273_CDS 44 392 42 394 PF03283.13 PAE Family 3 353 355 544.6 1e-163 1 CL0028
Cotton_A_05149_CDS 41 110 40 111 PF13966.6 zf-RVT Domain 2 65 85 32.4 1.1e-07 1 No_clan
Cotton_A_06526_CDS 34 98 33 98 PF00808.23 CBFD_NFYB_HMF Domain 2 65 65 97.7 3.4e-28 1 CL0012
Cotton_A_19907_CDS 201 495 201 495 PF00069.25 Pkinase Domain 1 264 264 258.8 5e-77 1 CL0016
Cotton_A_01252_CDS 41 193 41 194 PF04051.16 TRAPP Family 1 145 146 142.0 1e-41 1 CL0210
Cotton_A_28827_CDS 271 341 271 343 PF04564.15 U-box Domain 1 71 73 84.8 3.4e-24 1 CL0229
Cotton_A_28827_CDS 394 433 394 434 PF00514.23 Arm Repeat 1 40 41 36.9 2.4e-09 1 CL0020
Cotton_A_14354_CDS 99 198 98 199 PF03168.13 LEA_2 Domain 2 100 101 46.8 3.5e-12 1 CL0159
Cotton_A_40773_CDS 39 157 39 157 PF00411.19 Ribosomal_S11 Family 1 110 110 160.7 1.3e-47 1 CL0267
Cotton_A_34146_CDS 40 277 40 277 PF00141.23 peroxidase Domain 1 229 229 208.0 1.6e-61 1 CL0617
Cotton_A_34461_CDS 98 123 95 124 PF01535.20 PPR Family 4 29 31 20.6 0.00036 1 CL0020
Cotton_A_34461_CDS 127 170 124 171 PF13041.6 PPR_2 Repeat 5 48 50 34.4 1.8e-08 1 CL0020
Cotton_A_34461_CDS 199 222 199 223 PF01535.20 PPR Family 4 27 31 13.9 0.048 1 CL0020
Cotton_A_34461_CDS 227 256 227 257 PF01535.20 PPR Family 1 30 31 17.3 0.004 1 CL0020
Cotton_A_34461_CDS 299 325 297 327 PF01535.20 PPR Family 3 29 31 13.4 0.073 1 CL0020
Cotton_A_34461_CDS 328 358 328 358 PF01535.20 PPR Family 1 31 31 29.2 6.3e-07 1 CL0020
Cotton_A_34461_CDS 359 386 359 388 PF01535.20 PPR Family 1 28 31 21.0 0.00026 1 CL0020
Cotton_A_34461_CDS 432 455 429 457 PF01535.20 PPR Family 4 27 31 9.4 1.4 1 CL0020
Cotton_A_34461_CDS 461 487 461 490 PF01535.20 PPR Family 1 27 31 17.8 0.0028 1 CL0020
Cotton_A_34461_CDS 563 591 561 591 PF01535.20 PPR Family 3 31 31 21.1 0.00024 1 CL0020
Cotton_A_34461_CDS 634 657 632 659 PF01535.20 PPR Family 3 26 31 10.5 0.59 1 CL0020
Cotton_A_05920_CDS 49 174 49 180 PF03517.13 Voldacs Family 1 132 139 85.0 5e-24 1 CL0266
Cotton_A_03398_CDS 1 116 1 141 PF08449.11 UAA Family 104 220 302 97.6 7.8e-28 1 CL0184
Cotton_A_03398_CDS 117 160 117 170 PF16712.5 SCAB_CC Family 1 44 168 58.3 8.1e-16 1 No_clan
Cotton_A_25556_CDS 79 170 79 176 PF01453.24 B_lectin Domain 1 100 105 50.5 2.5e-13 1 No_clan
Cotton_A_25556_CDS 203 287 178 288 PF00954.20 S_locus_glycop Domain 30 110 111 41.9 1.2e-10 1 No_clan
Cotton_A_25556_CDS 481 764 478 767 PF00069.25 Pkinase Domain 5 259 264 157.1 5.3e-46 1 CL0016
Cotton_A_00228_CDS 38 812 37 812 PF01496.19 V_ATPase_I Family 2 813 813 986.4 9.5e-297 1 No_clan
Cotton_A_08868_CDS 11 106 6 112 PF14111.6 DUF4283 Domain 39 139 145 45.9 3.9e-12 1 No_clan
Cotton_A_04954_CDS 25 68 25 69 PF00249.31 Myb_DNA-binding Domain 1 44 46 39.8 3.7e-10 1 CL0123
Cotton_A_37285_CDS 122 276 122 276 PF04442.14 CtaG_Cox11 Family 1 151 151 207.4 9.8e-62 1 No_clan
Cotton_A_33354_CDS 156 175 153 177 PF00560.33 LRR_1 Repeat 1 20 23 9.7 1.4 1 CL0022
Cotton_A_33354_CDS 202 263 202 263 PF13855.6 LRR_8 Repeat 1 61 61 36.3 3.4e-09 1 CL0022
Cotton_A_33354_CDS 344 364 343 365 PF00560.33 LRR_1 Repeat 2 22 23 9.7 1.5 1 CL0022
Cotton_A_33354_CDS 367 388 366 388 PF00560.33 LRR_1 Repeat 2 23 23 12.4 0.19 1 CL0022
Cotton_A_27199_CDS 104 130 75 131 PF03765.15 CRAL_TRIO_N Domain 28 53 54 27.2 3.3e-06 1 CL0214
Cotton_A_27199_CDS 156 321 154 321 PF00650.20 CRAL_TRIO Domain 3 159 159 119.3 1.2e-34 1 CL0512
Cotton_A_28378_CDS 64 333 64 335 PF02705.16 K_trans Family 1 233 534 307.1 2.1e-91 1 CL0062
Cotton_A_28378_CDS 336 612 332 612 PF02705.16 K_trans Family 260 534 534 279.9 3.5e-83 1 CL0062
Cotton_A_03333_CDS 356 698 317 732 PF00176.23 SNF2_N Family 29 330 350 68.0 5.9e-19 1 CL0023
Cotton_A_03333_CDS 758 875 756 875 PF00271.31 Helicase_C Family 3 111 111 49.0 6.3e-13 1 CL0023
Cotton_A_25891_CDS 6 165 6 165 PF17835.1 NOG1_N Domain 1 160 160 197.7 1.1e-58 1 CL0669
Cotton_A_25891_CDS 171 205 170 210 PF01926.23 MMR_HSR1 Family 2 36 114 33.5 3.5e-08 1 CL0023
Cotton_A_25891_CDS 207 248 202 248 PF06858.14 NOG1 Family 17 58 58 57.1 1.1e-15 1 CL0023
Cotton_A_25891_CDS 345 398 345 398 PF08155.11 NOGCT Domain 1 54 54 96.0 9.5e-28 1 No_clan
Cotton_A_16542_CDS 78 413 78 413 PF07992.14 Pyr_redox_2 Domain 1 294 294 195.0 1.6e-57 1 CL0063
Cotton_A_16542_CDS 432 543 432 545 PF02852.22 Pyr_redox_dim Domain 1 108 110 107.5 4.2e-31 1 CL0608
Cotton_A_15032_CDS 38 534 38 534 PF00118.24 Cpn60_TCP1 Family 1 491 491 502.9 8.6e-151 1 No_clan
Cotton_A_03571_CDS 88 195 86 203 PF00436.25 SSB Domain 3 99 104 53.0 2.8e-14 1 CL0021
Cotton_A_37992_CDS 4 318 2 318 PF03224.14 V-ATPase_H_N Family 3 315 315 272.1 6.2e-81 1 CL0020
Cotton_A_37992_CDS 324 436 324 439 PF11698.8 V-ATPase_H_C Family 1 113 117 129.3 7e-38 1 CL0020
Cotton_A_33516_CDS 242 348 204 360 PF00270.29 DEAD Domain 43 149 176 33.8 2.6e-08 1 CL0023
Cotton_A_33516_CDS 604 1032 604 1033 PF00067.22 p450 Domain 1 433 463 327.8 1e-97 1 No_clan
Cotton_A_18541_CDS 3 50 1 178 PF14413.6 Thg1C Domain 32 79 122 54.1 1.6e-14 1 No_clan
Cotton_A_11158_CDS 240 297 240 297 PF04844.13 Ovate Family 1 58 58 87.7 3.8e-25 1 No_clan
Cotton_A_36440_CDS 54 80 54 81 PF05678.14 VQ Motif 1 27 28 42.5 3.3e-11 1 No_clan
Cotton_A_17015_CDS 5 138 4 144 PF01321.18 Creatinase_N Domain 2 124 132 58.2 1.3e-15 1 CL0356
Cotton_A_17015_CDS 148 332 147 332 PF16189.5 Creatinase_N_2 Domain 2 161 161 171.3 1.7e-50 1 CL0356
Cotton_A_17015_CDS 337 572 334 572 PF00557.24 Peptidase_M24 Domain 4 209 209 147.5 4.2e-43 1 No_clan
Cotton_A_17015_CDS 584 642 583 643 PF16188.5 Peptidase_M24_C Domain 2 62 63 83.4 8.2e-24 1 No_clan
Cotton_A_19656_CDS 22 393 6 402 PF00201.18 UDPGT Family 54 413 499 114.6 5.1e-33 1 CL0113
Cotton_A_06439_CDS 194 252 193 253 PF00847.20 AP2 Domain 2 53 54 44.3 1.5e-11 1 CL0081
Cotton_A_10857_CDS 76 207 76 208 PF00134.23 Cyclin_N Domain 1 126 127 103.6 6.1e-30 1 CL0065
Cotton_A_10857_CDS 211 310 210 321 PF02984.19 Cyclin_C Domain 2 97 119 39.2 6.1e-10 1 CL0065
Cotton_A_16601_CDS 128 477 127 479 PF00152.20 tRNA-synt_2 Domain 2 312 314 241.2 1.4e-71 1 CL0040
Cotton_A_06407_CDS 46 188 45 189 PF03018.14 Dirigent Family 2 147 148 183.8 1.5e-54 1 CL0650
Cotton_A_08673_CDS 78 137 77 137 PF00046.29 Homeodomain Domain 3 57 57 66.9 1e-18 1 CL0123
Cotton_A_12190_CDS 120 303 110 323 PF03661.13 UPF0121 Family 19 198 241 52.8 3.4e-14 1 No_clan
Cotton_A_25258_CDS 254 302 252 302 PF00010.26 HLH Domain 3 53 53 28.5 1.1e-06 1 No_clan
Cotton_A_09744_CDS 1 41 1 41 PF13041.6 PPR_2 Repeat 9 49 50 33.4 3.8e-08 1 CL0020
Cotton_A_09744_CDS 69 95 69 96 PF01535.20 PPR Family 4 30 31 18.6 0.0016 1 CL0020
Cotton_A_09744_CDS 98 127 97 127 PF01535.20 PPR Family 2 31 31 17.3 0.0039 1 CL0020
Cotton_A_09744_CDS 197 244 196 245 PF13041.6 PPR_2 Repeat 2 49 50 35.5 8.4e-09 1 CL0020
Cotton_A_09744_CDS 271 296 270 298 PF01535.20 PPR Family 2 27 31 14.9 0.023 1 CL0020
Cotton_A_09744_CDS 370 494 370 494 PF14432.6 DYW_deaminase Family 1 127 127 114.9 2e-33 1 CL0109
Cotton_A_02096_CDS 23 92 23 94 PF00240.23 ubiquitin Domain 1 70 72 73.8 6.7e-21 1 CL0072
Cotton_A_02096_CDS 508 544 507 544 PF00627.31 UBA Domain 2 37 37 37.8 1.3e-09 1 CL0214
Cotton_A_03958_CDS 7 200 7 201 PF13472.6 Lipase_GDSL_2 Domain 1 178 179 104.3 9.3e-30 1 CL0264
Cotton_A_15527_CDS 130 451 92 451 PF00225.23 Kinesin Domain 23 333 333 300.5 1.2e-89 1 CL0023
Cotton_A_22133_CDS 46 276 46 276 PF00230.20 MIP Family 1 227 227 275.6 3.3e-82 1 No_clan
Cotton_A_14408_CDS 35 200 3 212 PF05097.12 DUF688 Family 54 130 446 27.9 1.3e-06 1 No_clan
Cotton_A_01670_CDS 42 117 31 122 PF02362.21 B3 Family 15 94 101 57.5 9.8e-16 1 CL0405
Cotton_A_01670_CDS 199 276 187 279 PF02362.21 B3 Family 16 98 101 43.6 2e-11 1 CL0405
Cotton_A_01670_CDS 367 446 355 447 PF02362.21 B3 Family 16 100 101 49.9 2.2e-13 1 CL0405
Cotton_A_13762_CDS 5 52 4 53 PF00249.31 Myb_DNA-binding Domain 2 45 46 27.8 2.2e-06 1 CL0123
Cotton_A_11427_CDS 30 74 30 80 PF01554.18 MatE Family 1 44 161 25.1 1.2e-05 1 CL0222
Cotton_A_10476_CDS 35 73 34 74 PF08263.12 LRRNT_2 Family 2 40 41 33.6 3.6e-08 1 No_clan
Cotton_A_10476_CDS 631 897 628 897 PF07714.17 Pkinase_Tyr Domain 4 259 259 158.6 1.8e-46 1 CL0016
Cotton_A_20799_CDS 35 231 32 231 PF05757.11 PsbQ Family 3 200 200 274.2 6.2e-82 1 No_clan
Cotton_A_13756_CDS 113 148 107 150 PF08608.12 Wyosine_form Family 27 61 63 21.7 0.00019 1 No_clan
Cotton_A_12969_CDS 11 65 10 102 PF00162.19 PGK Domain 2 56 378 73.1 2e-20 1 No_clan
Cotton_A_04072_CDS 48 284 45 284 PF00141.23 peroxidase Domain 4 229 229 258.8 4.7e-77 1 CL0617
Cotton_A_24696_CDS 36 481 36 490 PF00067.22 p450 Domain 1 449 463 325.5 5.2e-97 1 No_clan
Cotton_A_24696_CDS 509 967 509 970 PF00067.22 p450 Domain 1 460 463 334.1 1.3e-99 1 No_clan
Cotton_A_02395_CDS 75 116 54 116 PF07896.12 DUF1674 Family 9 50 50 63.9 1.3e-17 1 No_clan
Cotton_A_20070_CDS 27 244 27 244 PF01487.15 DHquinase_I Domain 1 229 229 229.8 5e-68 1 CL0036
Cotton_A_20070_CDS 258 335 258 338 PF08501.11 Shikimate_dh_N Domain 1 80 83 74.5 6.1e-21 1 CL0603
Cotton_A_20070_CDS 379 449 372 477 PF01488.20 Shikimate_DH Family 10 84 138 40.0 3.6e-10 1 CL0063
Cotton_A_20070_CDS 499 528 499 528 PF18317.1 SDH_C Domain 1 30 31 37.2 1.7e-09 1 No_clan
Cotton_A_10272_CDS 682 748 680 748 PF02135.16 zf-TAZ Family 3 75 75 46.2 4.8e-12 1 No_clan
Cotton_A_10272_CDS 1063 1105 1058 1107 PF00628.29 PHD Domain 8 50 52 29.8 4.2e-07 1 CL0390
Cotton_A_10272_CDS 1162 1378 1158 1499 PF08214.11 HAT_KAT11 Domain 8 240 352 114.0 9e-33 1 CL0257
Cotton_A_23366_CDS 39 245 37 245 PF04720.12 PDDEXK_6 Family 3 221 221 205.3 1.1e-60 1 No_clan
Cotton_A_07676_CDS 104 154 103 155 PF00847.20 AP2 Domain 2 53 54 51.2 1.1e-13 1 CL0081
Cotton_A_30406_CDS 170 212 169 214 PF13041.6 PPR_2 Repeat 6 48 50 36.3 4.8e-09 1 CL0020
Cotton_A_30406_CDS 239 266 238 268 PF01535.20 PPR Family 2 29 31 22.8 7.1e-05 1 CL0020
Cotton_A_30406_CDS 267 313 266 315 PF13041.6 PPR_2 Repeat 2 48 50 45.3 7.1e-12 1 CL0020
Cotton_A_30406_CDS 403 446 402 451 PF13041.6 PPR_2 Repeat 2 45 50 31.5 1.5e-07 1 CL0020
Cotton_A_30406_CDS 478 504 476 505 PF01535.20 PPR Family 3 29 31 22.9 6.4e-05 1 CL0020
Cotton_A_30406_CDS 505 552 504 553 PF13041.6 PPR_2 Repeat 2 49 50 37.3 2.3e-09 1 CL0020
Cotton_A_19228_CDS 271 313 271 314 PF06203.14 CCT Motif 1 43 44 60.9 8.7e-17 1 CL0281
Cotton_A_16439_CDS 8 178 8 179 PF00071.22 Ras Domain 1 161 162 177.1 2e-52 1 CL0023
Cotton_A_00603_CDS 58 134 57 134 PF03330.18 DPBB_1 Domain 2 83 83 46.9 2.5e-12 1 CL0199
Cotton_A_00603_CDS 147 229 146 229 PF01357.21 Pollen_allerg_1 Domain 2 80 80 77.3 6.7e-22 1 CL0159
Cotton_A_19427_CDS 2 225 1 229 PF00067.22 p450 Domain 115 346 463 98.7 3.2e-28 1 No_clan
Cotton_A_30507_CDS 9 93 9 116 PF14226.6 DIOX_N Family 1 83 118 33.2 7.4e-08 1 CL0029
Cotton_A_30507_CDS 164 262 161 262 PF03171.20 2OG-FeII_Oxy Domain 3 101 101 68.2 7.2e-19 1 CL0029
Cotton_A_01754_CDS 28 75 28 75 PF00249.31 Myb_DNA-binding Domain 1 46 46 55.5 4.7e-15 1 CL0123
Cotton_A_01754_CDS 81 124 81 125 PF00249.31 Myb_DNA-binding Domain 1 44 46 52.5 4.2e-14 1 CL0123
Cotton_A_20151_CDS 57 102 55 105 PF00646.33 F-box Domain 3 40 48 24.8 1.5e-05 1 CL0271
Cotton_A_20151_CDS 120 361 120 361 PF01167.18 Tub Domain 1 241 241 262.7 3.4e-78 1 CL0395
Cotton_A_33403_CDS 34 147 34 150 PF13456.6 RVT_3 Domain 1 121 124 47.4 1.5e-12 1 CL0219
Cotton_A_20426_CDS 39 103 32 104 PF13966.6 zf-RVT Domain 16 83 85 27.7 3.4e-06 1 No_clan
Cotton_A_05307_CDS 30 340 30 341 PF00657.22 Lipase_GDSL Family 1 198 200 83.6 1.7e-23 1 CL0264
Cotton_A_07037_CDS 48 295 48 295 PF04873.13 EIN3 Family 1 252 252 434.5 1e-130 1 No_clan
Cotton_A_01871_CDS 53 145 38 260 PF13532.6 2OG-FeII_Oxy_2 Domain 56 150 196 39.6 6e-10 1 CL0029
Cotton_A_17285_CDS 5 86 5 97 PF18052.1 Rx_N Domain 1 83 93 65.8 3.1e-18 1 No_clan
Cotton_A_17285_CDS 169 342 167 348 PF00931.22 NB-ARC Domain 3 179 252 143.2 8e-42 1 CL0023
Cotton_A_13176_CDS 371 432 371 434 PF08652.11 RAI1 Family 1 66 68 71.2 6.1e-20 1 CL0236
Cotton_A_36791_CDS 48 93 48 93 PF01281.19 Ribosomal_L9_N Domain 2 47 47 63.6 8.8e-18 1 No_clan
Cotton_A_36791_CDS 111 192 105 193 PF03948.14 Ribosomal_L9_C Domain 3 85 86 70.0 1.8e-19 1 No_clan
Cotton_A_14968_CDS 106 331 105 331 PF03000.14 NPH3 Family 2 258 258 202.8 7.4e-60 1 No_clan
Cotton_A_08425_CDS 150 234 150 234 PF01985.21 CRS1_YhbY Domain 1 84 84 61.0 9.2e-17 1 No_clan
Cotton_A_38422_CDS 104 171 104 173 PF00076.22 RRM_1 Domain 1 67 70 53.8 1.3e-14 1 CL0221
Cotton_A_38422_CDS 197 266 197 268 PF00076.22 RRM_1 Domain 1 68 70 55.3 4.2e-15 1 CL0221
Cotton_A_38422_CDS 316 380 316 380 PF00076.22 RRM_1 Domain 1 70 70 69.5 1.6e-19 1 CL0221
Cotton_A_02394_CDS 43 148 34 150 PF04178.12 Got1 Family 5 111 113 117.8 3.1e-34 1 No_clan
Cotton_A_35023_CDS 79 225 78 229 PF00270.29 DEAD Domain 2 171 176 63.9 1.6e-17 1 CL0023
Cotton_A_35023_CDS 370 473 317 473 PF00271.31 Helicase_C Family 17 111 111 28.3 1.8e-06 1 CL0023
Cotton_A_35023_CDS 529 787 529 788 PF13234.6 rRNA_proc-arch Domain 1 269 270 236.1 6.8e-70 1 No_clan
Cotton_A_35023_CDS 815 985 814 985 PF08148.12 DSHCT Domain 2 164 164 161.6 1.2e-47 1 No_clan
Cotton_A_27700_CDS 8 144 8 145 PF00179.26 UQ_con Domain 1 139 140 177.4 1.1e-52 1 CL0208
Cotton_A_16519_CDS 8 302 6 302 PF03151.16 TPT Family 3 290 290 74.5 8.5e-21 1 CL0184
Cotton_A_31240_CDS 85 358 81 358 PF07714.17 Pkinase_Tyr Domain 5 259 259 160.6 4.2e-47 1 CL0016
Cotton_A_37303_CDS 158 227 155 228 PF16135.5 Jas Family 4 75 76 64.9 5.4e-18 1 No_clan
Cotton_A_29589_CDS 25 514 23 517 PF00083.24 Sugar_tr Family 3 448 452 155.7 1.8e-45 1 CL0015
Cotton_A_31878_CDS 221 243 220 243 PF13516.6 LRR_6 Repeat 2 24 24 28.8 6.9e-07 1 CL0022
Cotton_A_31878_CDS 248 271 248 271 PF13516.6 LRR_6 Repeat 1 24 24 12.0 0.18 1 CL0022
Cotton_A_31878_CDS 333 354 332 354 PF13516.6 LRR_6 Repeat 2 23 24 16.4 0.0065 1 CL0022
Cotton_A_31878_CDS 397 412 390 412 PF13516.6 LRR_6 Repeat 9 24 24 13.1 0.077 1 CL0022
Cotton_A_31878_CDS 418 440 417 440 PF13516.6 LRR_6 Repeat 2 24 24 17.2 0.0037 1 CL0022
Cotton_A_31878_CDS 446 468 445 468 PF13516.6 LRR_6 Repeat 2 24 24 15.4 0.014 1 CL0022
Cotton_A_31878_CDS 477 494 476 496 PF13516.6 LRR_6 Repeat 5 22 24 12.5 0.12 1 CL0022
Cotton_A_31878_CDS 501 524 501 524 PF13516.6 LRR_6 Repeat 1 24 24 13.0 0.085 1 CL0022
Cotton_A_31878_CDS 531 553 530 553 PF13516.6 LRR_6 Repeat 2 24 24 25.1 1.1e-05 1 CL0022
Cotton_A_09409_CDS 49 741 49 743 PF05664.11 DUF810 Family 1 684 686 881.1 6.1e-265 1 No_clan
Cotton_A_19912_CDS 32 102 32 108 PF05922.16 Inhibitor_I9 Domain 1 75 82 53.2 3.5e-14 1 CL0570
Cotton_A_19912_CDS 132 580 132 597 PF00082.22 Peptidase_S8 Domain 1 291 298 157.0 6.1e-46 1 No_clan
Cotton_A_19912_CDS 649 749 649 749 PF17766.1 fn3_6 Domain 1 99 99 85.3 2.6e-24 1 CL0159
Cotton_A_32743_CDS 58 189 57 189 PF16863.5 NtCtMGAM_N Domain 2 116 116 111.7 2.1e-32 1 CL0103
Cotton_A_32743_CDS 192 259 191 262 PF13802.6 Gal_mutarotas_2 Domain 2 62 66 28.9 1.1e-06 1 CL0103
Cotton_A_32743_CDS 281 771 281 771 PF01055.26 Glyco_hydro_31 Family 1 440 440 493.5 6.7e-148 1 CL0058
Cotton_A_40350_CDS 23 71 21 72 PF00847.20 AP2 Domain 3 53 54 41.0 1.6e-10 1 CL0081
Cotton_A_39681_CDS 83 177 58 191 PF00293.28 NUDIX Domain 17 117 131 41.4 1.3e-10 1 CL0261
Cotton_A_16351_CDS 360 524 347 544 PF00566.18 RabGAP-TBC Family 28 193 215 116.4 1.4e-33 1 No_clan
Cotton_A_23564_CDS 101 278 101 278 PF14543.6 TAXi_N Domain 1 178 178 125.5 2.7e-36 1 CL0129
Cotton_A_23564_CDS 298 453 297 455 PF14541.6 TAXi_C Domain 2 159 161 91.0 6.6e-26 1 CL0129
Cotton_A_25698_CDS 48 441 48 441 PF00202.21 Aminotran_3 Domain 1 406 406 397.5 5.4e-119 1 CL0061
Cotton_A_13629_CDS 33 159 31 159 PF02812.18 ELFV_dehydrog_N Domain 3 130 130 166.3 2.9e-49 1 CL0603
Cotton_A_13629_CDS 176 408 176 408 PF00208.21 ELFV_dehydrog Domain 1 243 243 253.4 2.4e-75 1 CL0063
Cotton_A_16859_CDS 2 65 2 66 PF08156.13 NOP5NT Domain 1 64 65 63.0 2.5e-17 1 No_clan
Cotton_A_16859_CDS 166 394 166 395 PF01798.18 Nop Family 1 229 230 284.3 6.4e-85 1 No_clan
Cotton_A_34131_CDS 28 494 27 506 PF00067.22 p450 Domain 2 449 463 215.5 1.2e-63 1 No_clan
Cotton_A_08492_CDS 31 369 30 407 PF00083.24 Sugar_tr Family 2 344 452 308.7 6.8e-92 1 CL0015
Cotton_A_08492_CDS 451 555 425 556 PF00083.24 Sugar_tr Family 347 451 452 97.7 6.9e-28 1 CL0015
Cotton_A_05202_CDS 16 130 13 135 PF01417.20 ENTH Domain 7 120 125 33.4 3.9e-08 1 CL0009
Cotton_A_20343_CDS 66 183 65 191 PF02527.15 GidB Family 2 109 184 117.1 5.7e-34 1 CL0063
Cotton_A_20343_CDS 232 297 222 304 PF02527.15 GidB Family 113 178 184 44.7 8.9e-12 1 CL0063
Cotton_A_01517_CDS 88 217 86 218 PF07884.14 VKOR Domain 3 123 124 87.5 7.8e-25 1 No_clan
Cotton_A_21313_CDS 131 521 103 522 PF00854.21 PTR2 Family 33 394 395 229.4 6.2e-68 1 CL0015
Cotton_A_00929_CDS 451 513 438 513 PF16135.5 Jas Family 17 76 76 26.3 6.3e-06 1 No_clan
Cotton_A_37050_CDS 55 523 55 538 PF00221.19 Lyase_aromatic Family 1 449 464 491.9 1.6e-147 1 No_clan
Cotton_A_17446_CDS 18 75 18 78 PF03386.14 ENOD93 Family 1 58 78 88.4 2.1e-25 1 No_clan
Cotton_A_09163_CDS 7 133 7 133 PF02365.15 NAM Family 1 126 126 128.6 2.6e-37 1 No_clan
Cotton_A_06715_CDS 25 318 25 320 PF03331.13 LpxC Family 1 268 270 265.0 7.6e-79 1 CL0329
Cotton_A_05591_CDS 33 349 18 349 PF04928.17 PAP_central Domain 29 248 248 340.1 5.1e-102 1 No_clan
Cotton_A_05591_CDS 78 151 65 160 PF01909.23 NTP_transf_2 Family 14 86 95 35.7 7.7e-09 1 CL0260
Cotton_A_05591_CDS 352 410 351 415 PF04926.15 PAP_RNA-bind Domain 2 59 171 47.3 1.8e-12 1 No_clan
Cotton_A_10527_CDS 202 285 202 309 PF12066.8 DUF3546 Family 1 84 110 80.8 7.6e-23 1 No_clan
Cotton_A_10527_CDS 437 643 437 645 PF04959.13 ARS2 Family 1 193 195 141.3 4.8e-41 1 CL0361
Cotton_A_35189_CDS 80 174 80 175 PF02298.17 Cu_bind_like Domain 1 83 84 24.1 2.7e-05 1 CL0026
Cotton_A_01440_CDS 21 107 21 121 PF00168.30 C2 Domain 1 90 103 89.3 1.7e-25 1 CL0154
Cotton_A_14296_CDS 213 275 213 275 PF01485.21 IBR Domain 1 62 62 57.4 1.3e-15 1 CL0229
Cotton_A_14296_CDS 292 339 280 345 PF01485.21 IBR Domain 12 57 62 37.4 2.2e-09 1 CL0229
Cotton_A_07148_CDS 18 132 17 132 PF14749.6 Acyl-CoA_ox_N Domain 2 125 125 113.5 9.1e-33 1 CL0544
Cotton_A_07148_CDS 134 246 134 247 PF02770.19 Acyl-CoA_dh_M Domain 1 96 97 44.8 1.1e-11 1 No_clan
Cotton_A_07148_CDS 498 674 497 674 PF01756.19 ACOX Family 2 180 180 170.1 3.3e-50 1 CL0087
Cotton_A_21897_CDS 12 94 12 94 PF01749.20 IBB Family 1 90 90 80.3 1e-22 1 CL0020
Cotton_A_21897_CDS 105 145 104 145 PF00514.23 Arm Repeat 2 41 41 43.0 3e-11 1 CL0020
Cotton_A_21897_CDS 147 186 147 187 PF00514.23 Arm Repeat 1 40 41 48.6 4.9e-13 1 CL0020
Cotton_A_21897_CDS 189 230 189 230 PF00514.23 Arm Repeat 1 41 41 34.6 1.3e-08 1 CL0020
Cotton_A_21897_CDS 241 271 233 271 PF00514.23 Arm Repeat 10 41 41 32.1 7.6e-08 1 CL0020
Cotton_A_21897_CDS 274 312 273 313 PF00514.23 Arm Repeat 2 40 41 32.2 7.1e-08 1 CL0020
Cotton_A_21897_CDS 315 356 315 356 PF00514.23 Arm Repeat 1 41 41 38.3 9e-10 1 CL0020
Cotton_A_21897_CDS 358 397 358 398 PF00514.23 Arm Repeat 1 40 41 47.7 9.3e-13 1 CL0020
Cotton_A_21897_CDS 407 439 402 441 PF00514.23 Arm Repeat 7 39 41 26.4 4.9e-06 1 CL0020
Cotton_A_21897_CDS 456 500 456 509 PF16186.5 Arm_3 Family 1 45 53 68.5 2.6e-19 1 CL0020
Cotton_A_30133_CDS 44 389 42 389 PF04724.13 Glyco_transf_17 Family 3 349 349 611.8 3.3e-184 1 No_clan
Cotton_A_21595_CDS 262 414 252 417 PF01435.18 Peptidase_M48 Domain 23 193 196 100.9 7.3e-29 1 CL0126
Cotton_A_18962_CDS 39 82 38 82 PF13639.6 zf-RING_2 Domain 2 44 44 43.8 2.3e-11 1 CL0229
Cotton_A_34843_CDS 87 115 85 115 PF01535.20 PPR Family 3 31 31 22.1 0.00011 1 CL0020
Cotton_A_34843_CDS 184 211 182 212 PF12854.7 PPR_1 Repeat 6 33 34 24.2 2e-05 1 CL0020
Cotton_A_34843_CDS 215 262 214 263 PF13041.6 PPR_2 Repeat 2 49 50 35.2 1e-08 1 CL0020
Cotton_A_34843_CDS 290 310 287 312 PF01535.20 PPR Family 4 24 31 14.9 0.024 1 CL0020
Cotton_A_10628_CDS 120 417 118 417 PF00069.25 Pkinase Domain 3 264 264 221.5 1.2e-65 1 CL0016
Cotton_A_10628_CDS 436 480 436 480 PF00433.24 Pkinase_C Family 1 46 46 29.2 1.1e-06 1 No_clan
Cotton_A_29569_CDS 342 698 341 698 PF03514.14 GRAS Family 2 374 374 310.7 1.2e-92 1 CL0063
Cotton_A_30698_CDS 106 387 105 388 PF06814.13 Lung_7-TM_R Family 7 294 295 171.9 1.7e-50 1 CL0192
Cotton_A_32501_CDS 2 98 1 98 PF13359.6 DDE_Tnp_4 Domain 34 121 158 39.9 3.2e-10 1 CL0219
Cotton_A_18065_CDS 402 664 398 667 PF07714.17 Pkinase_Tyr Domain 5 255 259 140.2 6.9e-41 1 CL0016
Cotton_A_30900_CDS 6 63 3 64 PF06364.12 DUF1068 Family 110 167 168 103.4 1.2e-29 1 No_clan
Cotton_A_17543_CDS 76 125 5 127 PF00005.27 ABC_tran Domain 79 126 137 25.8 1.3e-05 1 CL0023
Cotton_A_04321_CDS 316 568 293 568 PF07714.17 Pkinase_Tyr Domain 24 259 259 81.9 4.4e-23 1 CL0016
Cotton_A_22963_CDS 2 154 1 155 PF14541.6 TAXi_C Domain 16 160 161 108.1 3.8e-31 1 CL0129
Cotton_A_00577_CDS 27 161 12 163 PF03801.13 Ndc80_HEC Family 14 151 153 84.0 8.1e-24 1 No_clan
Cotton_A_22353_CDS 54 114 54 114 PF13921.6 Myb_DNA-bind_6 Domain 1 60 60 54.7 8.6e-15 1 CL0123
Cotton_A_13185_CDS 18 107 17 109 PF13837.6 Myb_DNA-bind_4 Domain 2 88 90 57.7 1.1e-15 1 CL0123
Cotton_A_18540_CDS 32 249 32 250 PF00314.17 Thaumatin Domain 1 213 214 246.7 1.8e-73 1 CL0293
Cotton_A_07045_CDS 7 37 3 37 PF00400.32 WD40 Repeat 8 37 38 12.4 0.23 1 CL0186
Cotton_A_07045_CDS 43 80 42 80 PF00400.32 WD40 Repeat 2 38 38 33.5 4.9e-08 1 CL0186
Cotton_A_07045_CDS 188 219 178 219 PF00400.32 WD40 Repeat 8 38 38 24.1 4.5e-05 1 CL0186
Cotton_A_07045_CDS 283 314 278 316 PF00400.32 WD40 Repeat 6 36 38 26.6 7.5e-06 1 CL0186
Cotton_A_05390_CDS 17 129 14 135 PF01417.20 ENTH Domain 8 119 125 28.1 1.7e-06 1 CL0009
Cotton_A_35630_CDS 21 292 19 310 PF04563.15 RNA_pol_Rpb2_1 Family 113 188 203 51.5 8.6e-14 1 No_clan
Cotton_A_35630_CDS 85 258 65 259 PF04561.14 RNA_pol_Rpb2_2 Domain 16 189 190 45.7 5.5e-12 1 No_clan
Cotton_A_35630_CDS 346 407 344 408 PF04565.16 RNA_pol_Rpb2_3 Domain 3 66 68 87.3 5.8e-25 1 No_clan
Cotton_A_35630_CDS 437 494 437 494 PF06883.12 RNA_pol_Rpa2_4 Domain 1 58 58 70.3 1e-19 1 No_clan
Cotton_A_35630_CDS 552 923 552 923 PF00562.28 RNA_pol_Rpb2_6 Domain 1 390 390 366.8 1.3e-109 1 CL0410
Cotton_A_35630_CDS 925 1033 925 1035 PF04560.20 RNA_pol_Rpb2_7 Domain 1 85 87 79.3 2.2e-22 1 No_clan
Cotton_A_05557_CDS 206 249 169 249 PF13419.6 HAD_2 Family 135 178 178 23.8 4e-05 1 CL0137
Cotton_A_08557_CDS 30 74 28 75 PF00319.18 SRF-TF Domain 3 47 48 77.6 3.4e-22 1 No_clan
Cotton_A_13267_CDS 2 78 1 89 PF12796.7 Ank_2 Repeat 4 70 83 53.5 2.8e-14 1 CL0465
Cotton_A_21574_CDS 24 73 23 73 PF03766.13 Remorin_N Family 2 54 54 51.1 1.1e-13 1 No_clan
Cotton_A_21574_CDS 77 182 76 182 PF03763.13 Remorin_C Family 2 107 107 111.9 1.3e-32 1 No_clan
Cotton_A_04926_CDS 2 56 2 56 PF08766.11 DEK_C Domain 1 54 54 51.5 6.9e-14 1 No_clan
Cotton_A_04926_CDS 192 263 191 263 PF02201.18 SWIB Domain 2 74 74 94.9 2e-27 1 No_clan
Cotton_A_04926_CDS 294 367 294 369 PF02201.18 SWIB Domain 1 73 74 56.9 1.4e-15 1 No_clan
Cotton_A_38995_CDS 85 370 82 371 PF08392.12 FAE1_CUT1_RppA Family 4 289 290 362.8 1.2e-108 1 CL0046
Cotton_A_26399_CDS 445 507 433 507 PF16135.5 Jas Family 17 76 76 27.3 3e-06 1 No_clan
Cotton_A_15780_CDS 91 170 88 171 PF00439.25 Bromodomain Domain 4 83 84 88.7 1.9e-25 1 No_clan
Cotton_A_36016_CDS 9 52 8 54 PF12937.7 F-box-like Domain 2 46 48 29.1 6.5e-07 1 CL0271
Cotton_A_36953_CDS 4 53 2 58 PF03004.14 Transposase_24 Family 3 53 142 24.1 3.2e-05 1 No_clan
Cotton_A_10532_CDS 533 655 532 655 PF04153.18 NOT2_3_5 Family 2 131 131 118.0 2.8e-34 1 No_clan
Cotton_A_34352_CDS 138 307 138 307 PF14543.6 TAXi_N Domain 1 178 178 184.1 2.7e-54 1 CL0129
Cotton_A_34352_CDS 329 475 328 476 PF14541.6 TAXi_C Domain 2 160 161 88.8 3.1e-25 1 CL0129
Cotton_A_06413_CDS 106 199 104 211 PF07714.17 Pkinase_Tyr Domain 4 103 259 60.4 1.6e-16 1 CL0016
Cotton_A_17551_CDS 313 473 312 473 PF03031.18 NIF Family 2 156 156 178.2 9.3e-53 1 CL0137
Cotton_A_06796_CDS 27 181 27 182 PF02518.26 HATPase_c Domain 1 111 112 56.7 3e-15 1 CL0025
Cotton_A_06796_CDS 184 682 184 696 PF00183.18 HSP90 Family 1 504 517 781.2 5.4e-235 1 No_clan
Cotton_A_18238_CDS 68 337 64 339 PF00664.23 ABC_membrane Family 5 272 274 189.2 1.1e-55 1 CL0241
Cotton_A_18238_CDS 406 554 405 554 PF00005.27 ABC_tran Domain 2 137 137 122.3 2e-35 1 CL0023
Cotton_A_18238_CDS 704 968 700 968 PF00664.23 ABC_membrane Family 6 274 274 162.1 2.1e-47 1 CL0241
Cotton_A_18238_CDS 1036 1184 1035 1184 PF00005.27 ABC_tran Domain 2 137 137 113.3 1.1e-32 1 CL0023
Cotton_A_09757_CDS 127 235 127 240 PF00069.25 Pkinase Domain 1 114 264 60.3 1.9e-16 1 CL0016
Cotton_A_19375_CDS 81 141 47 143 PF02225.22 PA Family 27 87 89 29.5 5.6e-07 1 CL0364
Cotton_A_19375_CDS 230 273 229 273 PF13639.6 zf-RING_2 Domain 2 44 44 46.2 4.3e-12 1 CL0229
Cotton_A_08796_CDS 123 188 123 196 PF02536.14 mTERF Family 1 65 314 40.9 1.2e-10 1 No_clan
Cotton_A_08733_CDS 35 112 35 114 PF07019.12 Rab5ip Family 1 80 82 70.2 1.7e-19 1 No_clan
Cotton_A_34130_CDS 573 777 572 777 PF12036.8 DUF3522 Family 2 188 188 183.3 5.8e-54 1 CL0192
Cotton_A_33592_CDS 32 369 30 403 PF00083.24 Sugar_tr Family 3 344 452 304.3 1.4e-90 1 CL0015
Cotton_A_33592_CDS 451 555 442 556 PF00083.24 Sugar_tr Family 344 451 452 99.1 2.6e-28 1 CL0015
Cotton_A_33418_CDS 57 79 57 79 PF00096.26 zf-C2H2 Domain 1 23 23 17.5 0.004 1 CL0361
Cotton_A_05355_CDS 103 482 103 484 PF00916.20 Sulfate_transp Family 1 378 380 416.3 9.7e-125 1 CL0062
Cotton_A_05355_CDS 535 653 535 653 PF01740.21 STAS Domain 1 117 117 100.2 5.4e-29 1 CL0502
Cotton_A_40475_CDS 27 63 25 63 PF08263.12 LRRNT_2 Family 5 41 41 41.7 1.1e-10 1 No_clan
Cotton_A_40475_CDS 116 173 115 175 PF13855.6 LRR_8 Repeat 2 59 61 33.8 2.1e-08 1 CL0022
Cotton_A_40475_CDS 693 963 692 963 PF07714.17 Pkinase_Tyr Domain 2 259 259 158.1 2.5e-46 1 CL0016
Cotton_A_12468_CDS 28 112 28 112 PF00234.22 Tryp_alpha_amyl Family 1 87 87 40.2 3.5e-10 1 CL0482
Cotton_A_31498_CDS 6 329 6 330 PF16363.5 GDP_Man_Dehyd Domain 1 331 332 232.6 8e-69 1 CL0063
Cotton_A_40102_CDS 213 435 206 437 PF03514.14 GRAS Family 137 359 374 234.2 2.2e-69 1 CL0063
Cotton_A_24759_CDS 13 484 13 484 PF05221.17 AdoHcyase Domain 1 299 299 472.7 4e-142 1 CL0325
Cotton_A_24759_CDS 240 403 240 403 PF00670.21 AdoHcyase_NAD Domain 1 162 162 274.0 4.3e-82 1 CL0063
Cotton_A_11291_CDS 28 194 27 201 PF02776.18 TPP_enzyme_N Domain 2 163 172 120.1 7.3e-35 1 CL0254
Cotton_A_11291_CDS 225 342 225 358 PF00205.22 TPP_enzyme_M Domain 1 118 137 77.1 1e-21 1 CL0085
Cotton_A_11291_CDS 435 560 406 560 PF02775.21 TPP_enzyme_C Domain 24 153 153 56.1 3.6e-15 1 CL0254
Cotton_A_31336_CDS 258 328 258 330 PF04564.15 U-box Domain 1 71 73 75.2 3.3e-21 1 CL0229
Cotton_A_31336_CDS 384 423 384 424 PF00514.23 Arm Repeat 1 40 41 41.6 7.7e-11 1 CL0020
Cotton_A_31336_CDS 426 464 425 465 PF00514.23 Arm Repeat 2 40 41 20.7 0.00032 1 CL0020
Cotton_A_25687_CDS 11 77 7 85 PF16187.5 Peptidase_M16_M Family 55 117 279 66.4 2.5e-18 1 CL0094
Cotton_A_10910_CDS 55 327 54 330 PF03982.13 DAGAT Family 2 294 297 240.6 1.7e-71 1 CL0228
Cotton_A_36967_CDS 6 249 3 256 PF00520.31 Ion_trans Family 3 237 245 75.6 3.5e-21 1 CL0030
Cotton_A_36967_CDS 345 430 343 432 PF00027.29 cNMP_binding Domain 3 87 89 52.8 3e-14 1 CL0029
Cotton_A_36967_CDS 477 561 475 567 PF12796.7 Ank_2 Repeat 3 77 83 51.8 9.2e-14 1 CL0465
Cotton_A_36967_CDS 678 748 678 748 PF11834.8 KHA Family 1 67 67 68.5 3.9e-19 1 No_clan
Cotton_A_18833_CDS 230 283 230 283 PF11250.8 FAF Family 1 54 54 71.6 4.7e-20 1 No_clan
Cotton_A_22677_CDS 6 59 1 59 PF14681.6 UPRTase Domain 154 207 207 46.3 3.2e-12 1 CL0533
Cotton_A_20572_CDS 94 248 93 249 PF04305.14 DUF455 Family 2 155 247 161.7 2.2e-47 1 CL0044
Cotton_A_30678_CDS 14 98 13 106 PF00011.21 HSP20 Family 2 92 102 44.1 1.7e-11 1 CL0190
Cotton_A_07493_CDS 13 260 13 260 PF06813.13 Nodulin-like Family 1 250 250 290.5 1e-86 1 CL0015
Cotton_A_00586_CDS 493 540 492 540 PF02042.15 RWP-RK Family 2 49 49 87.6 3.8e-25 1 No_clan
Cotton_A_00586_CDS 681 762 680 763 PF00564.24 PB1 Domain 2 83 84 55.7 3.5e-15 1 CL0072
Cotton_A_10785_CDS 20 198 4 207 PF00067.22 p450 Domain 70 240 463 35.4 5.2e-09 1 No_clan
Cotton_A_05548_CDS 98 356 98 358 PF02485.21 Branch Family 1 245 247 242.2 5.5e-72 1 CL0110
Cotton_A_17628_CDS 36 131 35 132 PF01657.17 Stress-antifung Family 2 94 95 72.0 4.7e-20 1 No_clan
Cotton_A_17628_CDS 152 243 147 245 PF01657.17 Stress-antifung Family 8 93 95 58.9 5.8e-16 1 No_clan
Cotton_A_18109_CDS 41 298 39 316 PF00664.23 ABC_membrane Family 3 253 274 164.7 3.3e-48 1 CL0241
Cotton_A_18109_CDS 384 536 384 536 PF00005.27 ABC_tran Domain 1 137 137 104.0 9.1e-30 1 CL0023
Cotton_A_18109_CDS 686 953 683 955 PF00664.23 ABC_membrane Family 5 271 274 176.8 6.7e-52 1 CL0241
Cotton_A_18109_CDS 1027 1176 1027 1176 PF00005.27 ABC_tran Domain 1 137 137 111.8 3.5e-32 1 CL0023
Cotton_A_30475_CDS 110 324 109 325 PF04755.12 PAP_fibrillin Family 2 197 198 249.9 1.9e-74 1 No_clan
Cotton_A_11467_CDS 61 356 55 357 PF03151.16 TPT Family 7 289 290 49.8 2.9e-13 1 CL0184
Cotton_A_02471_CDS 72 308 62 310 PF07714.17 Pkinase_Tyr Domain 14 257 259 91.9 3.8e-26 1 CL0016
Cotton_A_39966_CDS 16 143 16 143 PF02365.15 NAM Family 1 126 126 119.7 1.4e-34 1 No_clan
Cotton_A_05546_CDS 30 352 30 353 PF04084.14 ORC2 Family 1 331 332 321.6 4.8e-96 1 No_clan
Cotton_A_01115_CDS 349 565 347 575 PF00009.27 GTP_EFTU Domain 4 191 194 157.0 4.1e-46 1 CL0023
Cotton_A_01115_CDS 674 751 665 752 PF03143.17 GTP_EFTU_D3 Domain 30 111 112 43.7 2.9e-11 1 No_clan
Cotton_A_02097_CDS 38 360 37 360 PF00180.20 Iso_dh Domain 2 348 348 270.6 1.9e-80 1 CL0270
Cotton_A_35946_CDS 90 227 89 252 PF04893.17 Yip1 Domain 2 153 172 45.3 7.4e-12 1 CL0112
Cotton_A_37057_CDS 1 85 1 86 PF17250.2 NDUFB11 Family 1 85 86 179.6 1.2e-53 1 No_clan
Cotton_A_03596_CDS 22 151 21 170 PF00582.26 Usp Domain 4 121 141 26.6 7.2e-06 1 CL0039
Cotton_A_03596_CDS 475 752 472 757 PF00069.25 Pkinase Domain 4 258 264 137.0 7.5e-40 1 CL0016
Cotton_A_03596_CDS 757 825 756 826 PF04564.15 U-box Domain 2 71 73 59.2 3.3e-16 1 CL0229
Cotton_A_37994_CDS 115 622 113 623 PF00501.28 AMP-binding Family 3 422 423 300.5 1.5e-89 1 CL0378
Cotton_A_24752_CDS 16 67 16 68 PF00847.20 AP2 Domain 1 53 54 43.4 2.9e-11 1 CL0081
Cotton_A_13108_CDS 112 173 110 173 PF13891.6 zf-C3Hc3H Domain 5 63 63 60.2 1.9e-16 1 No_clan
Cotton_A_02797_CDS 58 321 56 323 PF00069.25 Pkinase Domain 3 260 264 136.2 1.3e-39 1 CL0016
Cotton_A_10047_CDS 118 139 117 140 PF00037.27 Fer4 Domain 2 23 24 28.0 1.3e-06 1 CL0344
Cotton_A_10047_CDS 221 304 220 312 PF00499.20 Oxidored_q3 Family 2 87 144 57.5 1.2e-15 1 No_clan
Cotton_A_34196_CDS 149 381 145 382 PF00931.22 NB-ARC Domain 6 251 252 170.9 2.7e-50 1 CL0023
Cotton_A_34196_CDS 515 572 515 572 PF13855.6 LRR_8 Repeat 1 59 61 40.4 1.8e-10 1 CL0022
Cotton_A_34196_CDS 586 641 585 643 PF13855.6 LRR_8 Repeat 2 57 61 28.8 7.8e-07 1 CL0022
Cotton_A_30960_CDS 53 302 53 305 PF01650.18 Peptidase_C13 Family 1 253 256 319.5 1.6e-95 1 CL0093
Cotton_A_28029_CDS 116 199 113 202 PF00153.27 Mito_carr Family 5 94 97 71.5 4.2e-20 1 No_clan
Cotton_A_28029_CDS 208 295 206 296 PF00153.27 Mito_carr Family 3 96 97 76.5 1.2e-21 1 No_clan
Cotton_A_28029_CDS 301 391 299 393 PF00153.27 Mito_carr Family 3 95 97 79.9 9.8e-23 1 No_clan
Cotton_A_08715_CDS 64 152 46 152 PF00583.25 Acetyltransf_1 Family 37 117 117 55.0 8.8e-15 1 CL0257
Cotton_A_31659_CDS 17 291 14 292 PF06027.12 SLC35F Family 4 298 299 253.3 3.5e-75 1 CL0184
Cotton_A_00911_CDS 75 147 75 148 PF14624.6 Vwaint Domain 1 69 70 79.3 1.7e-22 1 No_clan
Cotton_A_32308_CDS 48 80 36 85 PF00646.33 F-box Domain 9 41 48 29.1 6.5e-07 1 CL0271
Cotton_A_32308_CDS 118 160 117 160 PF01476.20 LysM Domain 2 44 44 22.4 9.3e-05 1 CL0187
Cotton_A_27577_CDS 360 386 358 387 PF01535.20 PPR Family 4 30 31 18.3 0.0019 1 CL0020
Cotton_A_23176_CDS 65 220 64 220 PF02453.17 Reticulon Family 2 157 157 198.2 7.5e-59 1 CL0484
Cotton_A_24973_CDS 357 385 355 387 PF00806.19 PUF Repeat 3 31 35 23.2 3.7e-05 1 CL0020
Cotton_A_08299_CDS 64 391 64 392 PF13968.6 DUF4220 Family 1 347 347 273.3 3.5e-81 1 No_clan
Cotton_A_08299_CDS 609 660 607 660 PF04578.13 DUF594 Family 4 55 55 64.8 4e-18 1 No_clan
Cotton_A_31713_CDS 53 156 53 161 PF14226.6 DIOX_N Family 1 113 118 84.1 1.2e-23 1 CL0029
Cotton_A_31713_CDS 210 306 207 306 PF03171.20 2OG-FeII_Oxy Domain 5 101 101 86.7 1.2e-24 1 CL0029
Cotton_A_25244_CDS 207 263 206 264 PF03909.17 BSD Domain 2 57 58 46.2 3.3e-12 1 No_clan
Cotton_A_34121_CDS 227 258 226 259 PF07719.17 TPR_2 Repeat 2 33 34 24.8 1.4e-05 1 CL0020
Cotton_A_34121_CDS 496 527 494 527 PF00515.28 TPR_1 Repeat 3 34 34 31.7 8.6e-08 1 CL0020
Cotton_A_24091_CDS 109 147 109 154 PF13418.6 Kelch_4 Repeat 2 41 49 22.7 7.4e-05 1 CL0186
Cotton_A_12859_CDS 23 85 21 91 PF00967.17 Barwin Domain 3 79 119 70.8 8.6e-20 1 CL0199
Cotton_A_30457_CDS 6 119 6 119 PF02136.20 NTF2 Domain 1 120 120 135.7 1.1e-39 1 CL0051
Cotton_A_36511_CDS 73 452 73 454 PF00916.20 Sulfate_transp Family 1 378 380 425.0 2.1e-127 1 CL0062
Cotton_A_36511_CDS 507 623 505 623 PF01740.21 STAS Domain 3 117 117 110.6 3.2e-32 1 CL0502
Cotton_A_36056_CDS 72 357 70 358 PF01095.19 Pectinesterase Family 3 297 298 203.2 3.7e-60 1 CL0268
Cotton_A_21843_CDS 18 125 1 126 PF03004.14 Transposase_24 Family 27 141 142 53.8 2.1e-14 1 No_clan
Cotton_A_29828_CDS 44 235 43 238 PF00149.28 Metallophos Domain 2 201 204 127.9 6.9e-37 1 CL0163
Cotton_A_01499_CDS 72 496 72 497 PF00501.28 AMP-binding Family 1 422 423 307.9 8.7e-92 1 CL0378
Cotton_A_01499_CDS 506 579 505 579 PF13193.6 AMP-binding_C Domain 2 76 76 71.0 1.3e-19 1 CL0531
Cotton_A_08709_CDS 29 88 29 88 PF02704.14 GASA Family 1 60 60 71.0 6.5e-20 1 No_clan
Cotton_A_06025_CDS 130 189 130 190 PF03106.15 WRKY Domain 1 58 59 85.5 2.1e-24 1 CL0274
Cotton_A_29874_CDS 21 79 19 79 PF06972.11 DUF1296 Family 3 60 60 104.4 2.4e-30 1 CL0214
Cotton_A_26252_CDS 66 305 66 305 PF06966.12 DUF1295 Family 1 235 235 224.8 1.1e-66 1 CL0115
Cotton_A_32037_CDS 142 359 103 368 PF00487.24 FA_desaturase Domain 3 239 254 67.2 1.9e-18 1 No_clan
Cotton_A_35153_CDS 167 969 166 969 PF00311.17 PEPcase Family 2 795 795 1002.3 1.5e-301 1 CL0151
Cotton_A_15152_CDS 112 215 89 236 PF03018.14 Dirigent Family 29 133 148 66.3 2.4e-18 1 CL0650
Cotton_A_02018_CDS 193 226 147 226 PF03765.15 CRAL_TRIO_N Domain 16 54 54 31.9 1.1e-07 1 CL0214
Cotton_A_02018_CDS 251 400 245 400 PF00650.20 CRAL_TRIO Domain 7 159 159 116.2 1.1e-33 1 CL0512
Cotton_A_34942_CDS 66 177 65 182 PF00582.26 Usp Domain 2 123 141 37.2 3.8e-09 1 CL0039
Cotton_A_20547_CDS 55 175 49 184 PF05978.16 UNC-93 Family 32 148 157 46.8 2.5e-12 1 CL0015
Cotton_A_12755_CDS 21 81 21 81 PF13921.6 Myb_DNA-bind_6 Domain 1 60 60 63.0 2.3e-17 1 CL0123
Cotton_A_15668_CDS 38 195 38 233 PF04548.16 AIG1 Domain 1 157 212 114.6 3.9e-33 1 CL0023
Cotton_A_10779_CDS 89 301 89 301 PF07816.11 DUF1645 Family 1 191 191 168.1 3.2e-49 1 No_clan
Cotton_A_13605_CDS 38 81 36 81 PF08263.12 LRRNT_2 Family 7 41 41 19.4 0.00095 1 No_clan
Cotton_A_13605_CDS 206 264 205 265 PF13855.6 LRR_8 Repeat 2 60 61 28.9 7e-07 1 CL0022
Cotton_A_13605_CDS 279 337 277 337 PF13855.6 LRR_8 Repeat 3 61 61 29.1 6.1e-07 1 CL0022
Cotton_A_13605_CDS 722 991 719 993 PF00069.25 Pkinase Domain 4 259 264 162.5 1.2e-47 1 CL0016
Cotton_A_08461_CDS 12 114 10 115 PF13947.6 GUB_WAK_bind Domain 3 105 106 61.6 1e-16 1 No_clan
Cotton_A_04716_CDS 12 256 11 265 PF01370.21 Epimerase Family 2 229 241 90.9 8.6e-26 1 CL0063
Cotton_A_10147_CDS 213 327 199 434 PF01704.18 UDPGP Family 98 210 413 21.4 8.2e-05 1 CL0110
Cotton_A_20950_CDS 27 116 27 120 PF12796.7 Ank_2 Repeat 1 79 83 47.7 1.8e-12 1 CL0465
Cotton_A_20950_CDS 139 393 135 393 PF07714.17 Pkinase_Tyr Domain 5 259 259 197.7 2e-58 1 CL0016
Cotton_A_31047_CDS 5 57 2 81 PF01612.20 DNA_pol_A_exo1 Domain 81 135 176 33.3 3.7e-08 1 CL0219
Cotton_A_31047_CDS 141 180 140 181 PF01344.25 Kelch_1 Repeat 3 42 46 25.1 9.9e-06 1 CL0186
Cotton_A_22232_CDS 2 82 1 93 PF00146.21 NADHdh Family 26 104 299 82.3 3.7e-23 1 CL0425
Cotton_A_35017_CDS 6 98 1 99 PF00931.22 NB-ARC Domain 153 251 252 49.6 2.8e-13 1 CL0023
Cotton_A_05521_CDS 41 221 38 222 PF00722.21 Glyco_hydro_16 Domain 4 176 177 174.6 1.3e-51 1 CL0004
Cotton_A_05521_CDS 255 292 247 292 PF06955.12 XET_C Family 9 47 47 49.0 4e-13 1 CL0004
Cotton_A_10542_CDS 22 137 16 138 PF00125.24 Histone Domain 9 130 131 84.0 1.2e-23 1 CL0012
Cotton_A_19641_CDS 7 101 5 104 PF00153.27 Mito_carr Family 4 94 97 63.6 1.2e-17 1 No_clan
Cotton_A_19641_CDS 108 203 107 204 PF00153.27 Mito_carr Family 2 95 97 76.3 1.3e-21 1 No_clan
Cotton_A_19641_CDS 210 291 207 293 PF00153.27 Mito_carr Family 4 91 97 68.1 4.8e-19 1 No_clan
Cotton_A_34528_CDS 34 69 32 69 PF00400.32 WD40 Repeat 3 38 38 21.1 0.00041 1 CL0186
Cotton_A_34528_CDS 120 158 119 158 PF00400.32 WD40 Repeat 2 37 38 22.1 0.0002 1 CL0186
Cotton_A_11447_CDS 1 132 1 132 PF00125.24 Histone Domain 1 131 131 181.1 1.1e-53 1 CL0012
Cotton_A_23940_CDS 29 64 29 64 PF14369.6 zinc_ribbon_9 Domain 1 35 35 42.0 7.8e-11 1 CL0167
Cotton_A_23940_CDS 243 285 242 285 PF13639.6 zf-RING_2 Domain 2 44 44 46.8 2.7e-12 1 CL0229
Cotton_A_11931_CDS 60 207 57 220 PF07714.17 Pkinase_Tyr Domain 4 153 259 106.3 1.6e-30 1 CL0016
Cotton_A_21067_CDS 40 144 40 144 PF13344.6 Hydrolase_6 Domain 1 101 101 62.1 4.2e-17 1 CL0137
Cotton_A_21067_CDS 274 358 273 362 PF13242.6 Hydrolase_like Domain 2 66 75 47.7 1.2e-12 1 CL0137
Cotton_A_25835_CDS 10 57 10 57 PF00319.18 SRF-TF Domain 1 48 48 90.4 3.5e-26 1 No_clan
Cotton_A_25835_CDS 85 171 80 172 PF01486.17 K-box Family 6 92 93 93.2 8.5e-27 1 No_clan
Cotton_A_10835_CDS 141 195 140 196 PF00046.29 Homeodomain Domain 2 56 57 59.2 2.6e-16 1 CL0123
Cotton_A_10835_CDS 197 231 197 232 PF02183.18 HALZ Coiled-coil 1 42 43 41.0 1.6e-10 1 No_clan
Cotton_A_03110_CDS 131 199 128 201 PF00575.23 S1 Domain 4 73 75 58.1 8.1e-16 1 CL0021
Cotton_A_03110_CDS 245 307 242 315 PF00575.23 S1 Domain 4 65 75 33.4 4.4e-08 1 CL0021
Cotton_A_12556_CDS 1 65 1 73 PF05695.12 DUF825 Family 1380 1445 1486 117.9 2.4e-34 1 No_clan
Cotton_A_12556_CDS 74 140 71 165 PF13947.6 GUB_WAK_bind Domain 14 80 106 27.1 5.4e-06 1 No_clan
Cotton_A_12556_CDS 206 270 184 278 PF14380.6 WAK_assoc Domain 27 91 104 51.0 1.9e-13 1 No_clan
Cotton_A_07272_CDS 40 121 39 122 PF14547.6 Hydrophob_seed Domain 2 84 85 96.2 9.5e-28 1 CL0482
Cotton_A_28044_CDS 6 44 5 48 PF00646.33 F-box Domain 2 40 48 25.4 9.2e-06 1 CL0271
Cotton_A_39607_CDS 105 293 105 294 PF04832.12 SOUL Family 1 167 168 162.7 8.6e-48 1 CL0319
Cotton_A_20399_CDS 152 202 151 202 PF03107.16 C1_2 Domain 2 47 47 26.4 6.4e-06 1 CL0006
Cotton_A_20399_CDS 274 320 273 320 PF03107.16 C1_2 Domain 2 47 47 34.2 2.3e-08 1 CL0006
Cotton_A_28868_CDS 261 400 94 438 PF00201.18 UDPGT Family 263 380 499 70.4 1.3e-19 1 CL0113
Cotton_A_01618_CDS 48 118 44 118 PF01883.19 FeS_assembly_P Domain 9 74 74 34.0 2.5e-08 1 CL0232
Cotton_A_36372_CDS 23 60 23 64 PF00646.33 F-box Domain 7 44 48 24.0 2.5e-05 1 CL0271
Cotton_A_38063_CDS 84 107 83 110 PF01535.20 PPR Family 3 26 31 11.3 0.33 1 CL0020
Cotton_A_38063_CDS 182 225 181 229 PF13041.6 PPR_2 Repeat 2 45 50 32.0 1.1e-07 1 CL0020
Cotton_A_38063_CDS 282 311 281 311 PF12854.7 PPR_1 Repeat 5 34 34 25.5 7.9e-06 1 CL0020
Cotton_A_38063_CDS 314 361 313 362 PF13041.6 PPR_2 Repeat 2 49 50 42.5 5.4e-11 1 CL0020
Cotton_A_38063_CDS 389 415 389 416 PF01535.20 PPR Family 4 30 31 22.7 7.5e-05 1 CL0020
Cotton_A_38063_CDS 417 447 417 447 PF01535.20 PPR Family 1 31 31 28.6 9.8e-07 1 CL0020
Cotton_A_38063_CDS 460 479 454 480 PF01535.20 PPR Family 9 28 31 9.8 0.99 1 CL0020
Cotton_A_38063_CDS 490 514 488 516 PF01535.20 PPR Family 3 27 31 12.1 0.18 1 CL0020
Cotton_A_19963_CDS 44 222 42 223 PF06697.12 DUF1191 Family 3 182 183 241.1 6.9e-72 1 CL0661
Cotton_A_13014_CDS 66 119 64 119 PF13637.6 Ank_4 Repeat 3 55 55 44.7 1.3e-11 1 CL0465
Cotton_A_19779_CDS 19 162 19 167 PF00182.19 Glyco_hydro_19 Domain 1 159 232 140.4 8.5e-41 1 CL0037
Cotton_A_19779_CDS 167 214 162 214 PF00182.19 Glyco_hydro_19 Domain 185 232 232 37.3 2.6e-09 1 CL0037
Cotton_A_22019_CDS 81 460 81 462 PF00916.20 Sulfate_transp Family 1 378 380 437.0 4.9e-131 1 CL0062
Cotton_A_22019_CDS 513 631 513 631 PF01740.21 STAS Domain 1 117 117 118.9 8.4e-35 1 CL0502
Cotton_A_21576_CDS 6 193 5 193 PF13869.6 NUDIX_2 Domain 2 188 188 274.3 4.1e-82 1 CL0261
Cotton_A_29515_CDS 1 61 1 64 PF03141.16 Methyltransf_29 Family 63 125 506 54.9 5.5e-15 1 CL0063
Cotton_A_29515_CDS 122 258 121 265 PF03141.16 Methyltransf_29 Family 341 477 506 148.7 2e-43 1 CL0063
Cotton_A_09051_CDS 41 117 40 134 PF14551.6 MCM_N Domain 3 87 104 39.8 5.5e-10 1 No_clan
Cotton_A_09051_CDS 141 276 140 277 PF17207.3 MCM_OB Domain 2 125 126 120.1 5.1e-35 1 CL0021
Cotton_A_09051_CDS 320 542 319 542 PF00493.23 MCM Domain 2 224 224 337.2 2.9e-101 1 CL0023
Cotton_A_09051_CDS 560 649 559 650 PF17855.1 MCM_lid Domain 2 86 87 98.0 3.2e-28 1 CL0671
Cotton_A_14437_CDS 68 118 68 119 PF00847.20 AP2 Domain 1 53 54 46.5 3.3e-12 1 CL0081
Cotton_A_23870_CDS 31 257 30 264 PF05057.14 DUF676 Family 2 214 219 217.0 2.1e-64 1 CL0028
Cotton_A_14372_CDS 116 165 115 166 PF00847.20 AP2 Domain 2 53 54 47.5 1.5e-12 1 CL0081
Cotton_A_04590_CDS 69 295 69 296 PF03087.14 DUF241 Family 1 233 234 206.1 6.5e-61 1 CL0133
Cotton_A_36698_CDS 124 220 120 232 PF13589.6 HATPase_c_3 Domain 6 101 137 55.2 6.4e-15 1 CL0025
Cotton_A_36698_CDS 350 488 350 488 PF17942.1 Morc6_S5 Family 1 139 139 207.0 1.1e-61 1 CL0329
Cotton_A_30095_CDS 22 437 18 438 PF00999.21 Na_H_Exchanger Family 5 380 381 196.7 5.2e-58 1 CL0064
Cotton_A_13724_CDS 32 242 32 242 PF00314.17 Thaumatin Domain 1 214 214 278.4 3.7e-83 1 CL0293
Cotton_A_22279_CDS 1 216 1 218 PF00931.22 NB-ARC Domain 28 250 252 154.8 2.3e-45 1 CL0023
Cotton_A_22279_CDS 414 471 411 472 PF13855.6 LRR_8 Repeat 2 59 61 28.3 1.1e-06 1 CL0022
Cotton_A_27933_CDS 31 358 31 358 PF00657.22 Lipase_GDSL Family 1 200 200 89.2 3.5e-25 1 CL0264
Cotton_A_14623_CDS 17 116 11 121 PF02466.19 Tim17 Family 7 106 111 50.1 3e-13 1 No_clan
Cotton_A_09245_CDS 1 77 1 77 PF00421.19 PSII Family 1 77 507 144.7 3.7e-42 1 No_clan
Cotton_A_06028_CDS 12 166 12 166 PF00252.18 Ribosomal_L16 Family 1 132 132 142.3 8.3e-42 1 No_clan
Cotton_A_09008_CDS 75 118 73 118 PF13639.6 zf-RING_2 Domain 3 44 44 42.7 5.2e-11 1 CL0229
Cotton_A_37407_CDS 10 90 9 121 PF14226.6 DIOX_N Family 2 79 118 43.8 3.8e-11 1 CL0029
Cotton_A_37407_CDS 172 261 157 263 PF03171.20 2OG-FeII_Oxy Domain 8 99 101 53.9 2e-14 1 CL0029
Cotton_A_05837_CDS 113 348 75 348 PF00069.25 Pkinase Domain 50 264 264 84.4 8e-24 1 CL0016
Cotton_A_39416_CDS 46 86 46 86 PF08263.12 LRRNT_2 Family 1 41 41 31.5 1.7e-07 1 No_clan
Cotton_A_39416_CDS 331 390 330 390 PF13855.6 LRR_8 Repeat 2 61 61 33.3 3.1e-08 1 CL0022
Cotton_A_39416_CDS 797 1074 795 1077 PF00069.25 Pkinase Domain 3 259 264 138.1 3.3e-40 1 CL0016
Cotton_A_15005_CDS 36 91 36 91 PF01849.18 NAC Family 1 57 57 68.1 4.6e-19 1 No_clan
Cotton_A_08830_CDS 35 215 33 215 PF01105.24 EMP24_GP25L Domain 3 182 182 168.6 1.3e-49 1 CL0521
Cotton_A_01416_CDS 20 93 9 97 PF14368.6 LTP_2 Family 10 90 97 35.4 8.6e-09 1 CL0482
Cotton_A_25415_CDS 70 120 70 120 PF13041.6 PPR_2 Repeat 1 50 50 30.3 3.6e-07 1 CL0020
Cotton_A_25415_CDS 173 220 172 221 PF13041.6 PPR_2 Repeat 2 49 50 45.2 7.8e-12 1 CL0020
Cotton_A_25415_CDS 252 275 251 277 PF01535.20 PPR Family 6 29 31 12.1 0.19 1 CL0020
Cotton_A_25415_CDS 308 355 307 356 PF13041.6 PPR_2 Repeat 2 49 50 41.0 1.6e-10 1 CL0020
Cotton_A_25415_CDS 384 406 382 408 PF01535.20 PPR Family 4 26 31 10.9 0.45 1 CL0020
Cotton_A_25415_CDS 413 459 411 460 PF13041.6 PPR_2 Repeat 3 49 50 34.8 1.4e-08 1 CL0020
Cotton_A_25415_CDS 486 510 485 513 PF01535.20 PPR Family 2 26 31 15.1 0.02 1 CL0020
Cotton_A_25415_CDS 586 709 585 709 PF14432.6 DYW_deaminase Family 2 127 127 129.4 6.8e-38 1 CL0109
Cotton_A_34737_CDS 33 123 29 124 PF01657.17 Stress-antifung Family 7 94 95 57.6 1.5e-15 1 No_clan
Cotton_A_16784_CDS 41 198 41 201 PF01554.18 MatE Family 1 158 161 109.3 1.4e-31 1 CL0222
Cotton_A_16784_CDS 262 357 262 362 PF01554.18 MatE Family 1 95 161 57.4 1.3e-15 1 CL0222
Cotton_A_30804_CDS 7 261 7 263 PF12697.7 Abhydrolase_6 Domain 1 217 220 71.6 1.4e-19 1 CL0028
Cotton_A_14606_CDS 41 79 38 87 PF05755.12 REF Family 4 42 206 51.7 9.6e-14 1 No_clan
Cotton_A_14606_CDS 90 220 81 222 PF05755.12 REF Family 74 204 206 140.1 8e-41 1 No_clan
Cotton_A_34724_CDS 4 61 2 64 PF03004.14 Transposase_24 Family 3 61 142 28.6 1.2e-06 1 No_clan
Cotton_A_17362_CDS 10 135 10 136 PF02365.15 NAM Family 1 125 126 128.7 2.3e-37 1 No_clan
Cotton_A_25453_CDS 11 442 5 442 PF00171.22 Aldedh Family 29 462 462 288.3 8.4e-86 1 CL0099
Cotton_A_28440_CDS 73 142 73 142 PF01287.20 eIF-5a Domain 1 69 69 101.6 1.9e-29 1 CL0021
Cotton_A_38076_CDS 163 346 147 367 PF03661.13 UPF0121 Family 18 197 241 65.3 5.3e-18 1 No_clan
Cotton_A_40010_CDS 22 144 20 146 PF00106.25 adh_short Domain 4 117 195 54.8 8.2e-15 1 CL0063
Cotton_A_39906_CDS 110 124 108 125 PF07145.15 PAM2 Motif 3 17 18 21.6 0.00012 1 No_clan
Cotton_A_39906_CDS 200 260 199 265 PF00076.22 RRM_1 Domain 2 65 70 32.2 7e-08 1 CL0221
Cotton_A_39906_CDS 295 362 295 363 PF00076.22 RRM_1 Domain 1 69 70 31.9 8.8e-08 1 CL0221
Cotton_A_36293_CDS 26 63 25 63 PF08263.12 LRRNT_2 Family 2 41 41 32.6 7.4e-08 1 No_clan
Cotton_A_36293_CDS 631 897 628 898 PF07714.17 Pkinase_Tyr Domain 4 258 259 162.8 9.3e-48 1 CL0016
Cotton_A_00521_CDS 16 92 13 93 PF06404.12 PSK Family 3 89 90 73.7 1.8e-20 1 No_clan
Cotton_A_10039_CDS 1 36 1 36 PF01701.18 PSI_PsaJ Family 1 36 37 71.8 4.7e-20 1 No_clan
Cotton_A_10039_CDS 53 109 53 109 PF00471.20 Ribosomal_L33 Family 1 47 47 76.9 1.2e-21 1 CL0167
Cotton_A_06802_CDS 36 173 32 173 PF03208.19 PRA1 Family 5 143 143 107.8 3.4e-31 1 No_clan
Cotton_A_34412_CDS 4 269 4 269 PF01459.22 Porin_3 Family 1 270 270 205.7 9e-61 1 CL0193
Cotton_A_13806_CDS 219 276 202 278 PF00364.22 Biotin_lipoyl Domain 15 71 73 24.6 1.7e-05 1 CL0105
Cotton_A_30795_CDS 83 117 83 117 PF02037.27 SAP Family 1 35 35 39.8 2.5e-10 1 CL0306
Cotton_A_08747_CDS 108 425 104 438 PF00295.17 Glyco_hydro_28 Domain 6 308 325 292.6 3.3e-87 1 CL0268
Cotton_A_12290_CDS 123 420 122 421 PF00557.24 Peptidase_M24 Domain 2 208 209 140.0 8.3e-41 1 No_clan
Cotton_A_03967_CDS 35 93 35 93 PF08246.12 Inhibitor_I29 Domain 1 58 58 63.8 1.4e-17 1 No_clan
Cotton_A_03967_CDS 124 341 124 341 PF00112.23 Peptidase_C1 Domain 1 218 218 277.3 1.2e-82 1 CL0125
Cotton_A_22894_CDS 119 317 119 317 PF01545.21 Cation_efflux Family 1 199 199 110.7 7.4e-32 1 No_clan
Cotton_A_29708_CDS 41 60 39 63 PF00010.26 HLH Domain 4 23 53 21.5 0.00016 1 No_clan
Cotton_A_03049_CDS 240 316 238 317 PF00564.24 PB1 Domain 3 83 84 56.6 1.8e-15 1 CL0072
Cotton_A_08914_CDS 24 164 23 165 PF03018.14 Dirigent Family 2 147 148 166.2 4.2e-49 1 CL0650
Cotton_A_11378_CDS 14 78 13 79 PF00313.22 CSD Domain 2 65 66 88.9 1.4e-25 1 CL0021
Cotton_A_11378_CDS 108 123 107 124 PF00098.23 zf-CCHC Domain 2 17 18 27.2 2.7e-06 1 CL0511
Cotton_A_11378_CDS 147 162 146 163 PF00098.23 zf-CCHC Domain 2 17 18 29.9 3.8e-07 1 CL0511
Cotton_A_11378_CDS 174 189 174 191 PF00098.23 zf-CCHC Domain 1 16 18 27.7 1.9e-06 1 CL0511
Cotton_A_11378_CDS 200 216 200 217 PF00098.23 zf-CCHC Domain 1 17 18 27.7 1.8e-06 1 CL0511
Cotton_A_11378_CDS 222 238 221 238 PF00098.23 zf-CCHC Domain 2 18 18 32.9 4.2e-08 1 CL0511
Cotton_A_17468_CDS 267 441 259 449 PF00664.23 ABC_membrane Family 91 265 274 67.8 1.2e-18 1 CL0241
Cotton_A_17468_CDS 515 655 515 656 PF00005.27 ABC_tran Domain 1 136 137 82.3 4.4e-23 1 CL0023
Cotton_A_21553_CDS 8 104 7 108 PF00168.30 C2 Domain 2 98 103 57.2 1.7e-15 1 CL0154
Cotton_A_36919_CDS 1 66 1 71 PF00407.19 Bet_v_1 Domain 1 67 151 41.1 1.5e-10 1 CL0209
Cotton_A_22846_CDS 32 116 32 142 PF14226.6 DIOX_N Family 1 80 118 47.0 3.7e-12 1 CL0029
Cotton_A_22846_CDS 188 281 182 282 PF03171.20 2OG-FeII_Oxy Domain 7 100 101 62.4 4.5e-17 1 CL0029
Cotton_A_12716_CDS 153 523 153 523 PF03514.14 GRAS Family 1 374 374 363.2 1.4e-108 1 CL0063
Cotton_A_33821_CDS 39 184 38 185 PF03018.14 Dirigent Family 2 147 148 137.2 3.5e-40 1 CL0650
Cotton_A_40060_CDS 182 388 181 388 PF14381.6 EDR1 Family 2 200 200 266.7 1.2e-79 1 CL0125
Cotton_A_40060_CDS 576 829 575 829 PF07714.17 Pkinase_Tyr Domain 2 259 259 233.9 1.8e-69 1 CL0016
Cotton_A_01950_CDS 91 174 86 176 PF00153.27 Mito_carr Family 6 94 97 67.6 6.7e-19 1 No_clan
Cotton_A_01950_CDS 192 272 185 274 PF00153.27 Mito_carr Family 10 95 97 55.3 4.8e-15 1 No_clan
Cotton_A_04263_CDS 108 209 108 210 PF02362.21 B3 Family 1 100 101 76.1 1.6e-21 1 CL0405
Cotton_A_04263_CDS 257 340 257 340 PF06507.13 Auxin_resp Family 1 83 83 113.5 4e-33 1 No_clan
Cotton_A_01135_CDS 322 516 321 540 PF13632.6 Glyco_trans_2_3 Domain 2 192 197 76.0 3.5e-21 1 CL0110
Cotton_A_14231_CDS 296 353 293 353 PF13855.6 LRR_8 Repeat 4 61 61 33.1 3.4e-08 1 CL0022
Cotton_A_14231_CDS 402 580 400 580 PF11721.8 Malectin Domain 3 165 165 130.5 6.3e-38 1 CL0202
Cotton_A_21357_CDS 147 264 147 267 PF03514.14 GRAS Family 1 121 374 97.5 7.6e-28 1 CL0063
Cotton_A_27952_CDS 89 364 85 365 PF07714.17 Pkinase_Tyr Domain 5 258 259 157.8 3.1e-46 1 CL0016
Cotton_A_36217_CDS 42 281 41 282 PF00141.23 peroxidase Domain 2 228 229 254.5 9e-76 1 CL0617
Cotton_A_26095_CDS 187 263 185 263 PF00575.23 S1 Domain 3 75 75 60.8 1.2e-16 1 CL0021
Cotton_A_31121_CDS 274 322 274 323 PF02891.20 zf-MIZ Domain 1 49 50 71.8 2.9e-20 1 CL0229
Cotton_A_26513_CDS 36 356 36 359 PF00657.22 Lipase_GDSL Family 1 197 200 36.0 6.6e-09 1 CL0264
Cotton_A_07682_CDS 1 98 1 99 PF04618.12 HD-ZIP_N Domain 1 109 110 98.0 4.2e-28 1 No_clan
Cotton_A_07682_CDS 130 184 129 185 PF00046.29 Homeodomain Domain 2 56 57 58.4 4.5e-16 1 CL0123
Cotton_A_07682_CDS 186 220 186 221 PF02183.18 HALZ Coiled-coil 1 42 43 44.0 1.9e-11 1 No_clan
Cotton_A_01724_CDS 37 811 36 811 PF01496.19 V_ATPase_I Family 2 813 813 948.9 2e-285 1 No_clan
Cotton_A_17302_CDS 106 160 105 161 PF00046.29 Homeodomain Domain 2 56 57 60.8 8.1e-17 1 CL0123
Cotton_A_17302_CDS 162 194 162 196 PF02183.18 HALZ Coiled-coil 1 40 43 36.3 4.9e-09 1 No_clan
Cotton_A_30039_CDS 35 128 34 132 PF00307.31 CH Domain 6 103 109 32.6 7e-08 1 CL0188
Cotton_A_30039_CDS 439 599 434 599 PF16796.5 Microtub_bd Domain 7 149 149 154.9 1.4e-45 1 CL0023
Cotton_A_26327_CDS 60 159 60 172 PF14226.6 DIOX_N Family 1 102 118 78.2 7.9e-22 1 CL0029
Cotton_A_26327_CDS 215 310 211 310 PF03171.20 2OG-FeII_Oxy Domain 7 101 101 96.7 9.3e-28 1 CL0029
Cotton_A_06491_CDS 31 185 31 186 PF02518.26 HATPase_c Domain 1 111 112 52.9 4.5e-14 1 CL0025
Cotton_A_06491_CDS 188 685 188 700 PF00183.18 HSP90 Family 1 503 517 780.1 1.1e-234 1 No_clan
Cotton_A_08224_CDS 46 167 19 167 PF08613.11 Cyclin Family 37 161 161 127.2 7.4e-37 1 CL0065
Cotton_A_08890_CDS 38 82 8 84 PF17067.5 RPS31 Family 53 96 99 40.2 2.8e-10 1 No_clan
Cotton_A_38407_CDS 53 290 50 292 PF00230.20 MIP Family 4 225 227 134.8 3.6e-39 1 No_clan
Cotton_A_27851_CDS 120 202 118 203 PF00111.27 Fer2 Domain 3 77 78 35.9 5.4e-09 1 CL0486
Cotton_A_17720_CDS 261 395 261 397 PF04146.15 YTH Domain 1 164 166 158.2 1.7e-46 1 CL0178
Cotton_A_15607_CDS 44 94 44 131 PF01627.23 Hpt Family 1 49 85 27.9 2.1e-06 1 No_clan
Cotton_A_29207_CDS 10 1143 9 1148 PF02463.19 SMC_N Domain 2 215 220 157.4 3.5e-46 1 CL0023
Cotton_A_29207_CDS 517 606 516 611 PF06470.13 SMC_hinge Domain 2 90 117 56.5 3.1e-15 1 No_clan
Cotton_A_29871_CDS 18 104 9 106 PF13456.6 RVT_3 Domain 38 122 124 31.8 9.9e-08 1 CL0219
Cotton_A_06914_CDS 11 451 9 464 PF00067.22 p450 Domain 2 447 463 259.0 7.8e-77 1 No_clan
Cotton_A_16588_CDS 4 88 4 88 PF01780.19 Ribosomal_L37ae Family 1 85 85 134.1 1.4e-39 1 CL0167
Cotton_A_21224_CDS 84 348 82 349 PF00069.25 Pkinase Domain 4 261 264 178.2 1.9e-52 1 CL0016
Cotton_A_09508_CDS 45 428 40 432 PF00999.21 Na_H_Exchanger Family 3 374 381 180.7 3.6e-53 1 CL0064
Cotton_A_27704_CDS 1 60 1 61 PF02792.14 Mago_nashi Family 66 123 142 66.9 2e-18 1 No_clan
Cotton_A_38933_CDS 75 122 54 122 PF17284.2 Spermine_synt_N Domain 8 53 53 72.5 1.9e-20 1 No_clan
Cotton_A_38933_CDS 125 311 125 313 PF01564.17 Spermine_synth Domain 1 186 188 212.8 2.7e-63 1 CL0063
Cotton_A_18450_CDS 27 91 27 91 PF18151.1 DUF5601 Domain 1 65 65 51.8 7.2e-14 1 No_clan
Cotton_A_18450_CDS 138 241 136 242 PF02204.18 VPS9 Family 3 103 104 100.7 4.5e-29 1 No_clan
Cotton_A_17981_CDS 28 78 28 78 PF08100.11 Dimerisation Domain 1 51 51 42.1 6.2e-11 1 CL0123
Cotton_A_17981_CDS 129 333 129 334 PF00891.18 Methyltransf_2 Domain 1 209 210 225.9 3.1e-67 1 CL0063
Cotton_A_08242_CDS 7 176 6 177 PF13967.6 RSN1_TM Family 2 155 156 152.8 6.2e-45 1 No_clan
Cotton_A_08242_CDS 198 359 198 359 PF14703.6 PHM7_cyt Domain 1 176 176 149.3 1.2e-43 1 CL0221
Cotton_A_08242_CDS 370 642 370 642 PF02714.15 RSN1_7TM Family 1 274 274 281.5 6.6e-84 1 CL0416
Cotton_A_00728_CDS 39 135 34 135 PF03297.15 Ribosomal_S25 Family 5 101 101 143.0 2.9e-42 1 CL0123
Cotton_A_23179_CDS 174 256 172 256 PF01169.19 UPF0016 Family 3 75 75 62.7 3.1e-17 1 CL0292
Cotton_A_23179_CDS 301 361 300 368 PF01169.19 UPF0016 Family 2 62 75 60.4 1.5e-16 1 CL0292
Cotton_A_01034_CDS 104 123 103 123 PF00612.27 IQ Motif 2 21 21 24.2 1.7e-05 1 CL0220
Cotton_A_01034_CDS 311 348 274 372 PF13178.6 DUF4005 Family 19 47 93 42.1 1.1e-10 1 No_clan
Cotton_A_18022_CDS 4 97 1 98 PF09118.11 DUF1929 Domain 11 95 96 78.1 4.8e-22 1 CL0159
Cotton_A_06923_CDS 451 650 448 651 PF00326.21 Peptidase_S9 Domain 6 210 212 151.8 1.7e-44 1 CL0028
Cotton_A_07228_CDS 257 406 237 423 PF01852.19 START Domain 37 179 209 33.3 3e-08 1 CL0209
Cotton_A_07228_CDS 555 740 555 740 PF07059.12 DUF1336 Family 1 208 229 186.6 7e-55 1 No_clan
Cotton_A_13039_CDS 13 291 11 291 PF00069.25 Pkinase Domain 3 264 264 242.3 5.4e-72 1 CL0016
Cotton_A_23555_CDS 70 188 60 188 PF00134.23 Cyclin_N Domain 14 127 127 87.0 8.2e-25 1 CL0065
Cotton_A_23555_CDS 190 303 190 314 PF02984.19 Cyclin_C Domain 1 109 119 65.8 3.4e-18 1 CL0065
Cotton_A_05730_CDS 77 177 76 177 PF01453.24 B_lectin Domain 2 105 105 101.9 2.6e-29 1 No_clan
Cotton_A_05730_CDS 209 264 209 270 PF00954.20 S_locus_glycop Domain 1 56 111 31.8 1.6e-07 1 No_clan
Cotton_A_21727_CDS 195 430 190 454 PF00331.20 Glyco_hydro_10 Family 7 245 316 121.8 3.3e-35 1 CL0058
Cotton_A_25730_CDS 38 150 37 152 PF08240.12 ADH_N Domain 2 107 109 93.5 7.1e-27 1 CL0296
Cotton_A_25730_CDS 194 317 194 318 PF00107.26 ADH_zinc_N Family 1 129 130 63.3 2.2e-17 1 CL0063
Cotton_A_13893_CDS 76 470 48 482 PF00067.22 p450 Domain 47 446 463 211.9 1.5e-62 1 No_clan
Cotton_A_25778_CDS 56 198 56 198 PF01565.23 FAD_binding_4 Domain 1 139 139 78.9 2.8e-22 1 CL0077
Cotton_A_25778_CDS 230 393 230 397 PF09265.10 Cytokin-bind Domain 1 163 281 189.2 9.6e-56 1 CL0277
Cotton_A_08656_CDS 339 389 335 394 PF00170.21 bZIP_1 Family 5 55 64 50.8 1.4e-13 1 CL0018
Cotton_A_26154_CDS 5 169 5 170 PF13967.6 RSN1_TM Family 1 155 156 116.1 1.2e-33 1 No_clan
Cotton_A_26154_CDS 191 356 191 356 PF14703.6 PHM7_cyt Domain 1 176 176 134.3 5.1e-39 1 CL0221
Cotton_A_26154_CDS 367 638 367 638 PF02714.15 RSN1_7TM Family 1 274 274 251.2 1.1e-74 1 CL0416
Cotton_A_36542_CDS 1 131 1 134 PF01694.22 Rhomboid Family 27 147 150 53.7 2.2e-14 1 CL0207
Cotton_A_23450_CDS 7 116 1 117 PF00892.20 EamA Family 34 136 137 36.0 6.9e-09 1 CL0184
Cotton_A_23917_CDS 116 225 115 226 PF01648.20 ACPS Domain 2 113 114 57.3 1.5e-15 1 CL0670
Cotton_A_34861_CDS 153 313 153 313 PF13359.6 DDE_Tnp_4 Domain 1 158 158 58.3 6.8e-16 1 CL0219
Cotton_A_21284_CDS 44 126 44 140 PF01627.23 Hpt Family 1 82 85 54.1 1.4e-14 1 No_clan
Cotton_A_09080_CDS 75 135 64 141 PF13259.6 DUF4050 Family 7 67 183 29.2 1.1e-06 1 No_clan
Cotton_A_09080_CDS 142 181 139 181 PF13259.6 DUF4050 Family 144 183 183 26.3 7.9e-06 1 No_clan
Cotton_A_32880_CDS 53 87 53 88 PF07897.11 EAR Family 1 35 36 61.9 3.1e-17 1 No_clan
Cotton_A_32880_CDS 111 157 111 166 PF16136.5 NINJA_B Family 1 50 111 70.0 2e-19 1 No_clan
Cotton_A_18980_CDS 13 123 13 124 PF03195.14 LOB Family 1 98 99 130.2 3.4e-38 1 No_clan
Cotton_A_23197_CDS 272 306 269 307 PF00400.32 WD40 Repeat 4 37 38 21.3 0.00035 1 CL0186
Cotton_A_27300_CDS 88 186 87 188 PF03168.13 LEA_2 Domain 2 99 101 31.4 2.1e-07 1 CL0159
Cotton_A_21653_CDS 72 178 72 178 PF01453.24 B_lectin Domain 1 105 105 126.1 7.4e-37 1 No_clan
Cotton_A_21653_CDS 297 363 297 363 PF08276.11 PAN_2 Domain 1 67 67 75.9 1.9e-21 1 CL0168
Cotton_A_21653_CDS 371 451 358 461 PF00069.25 Pkinase Domain 71 153 264 55.2 6.4e-15 1 CL0016
Cotton_A_33557_CDS 89 143 89 143 PF14416.6 PMR5N Domain 1 53 53 73.0 1.8e-20 1 No_clan
Cotton_A_33557_CDS 144 429 144 429 PF13839.6 PC-Esterase Family 1 283 283 303.4 1.9e-90 1 CL0264
Cotton_A_26567_CDS 106 308 106 312 PF00485.18 PRK Domain 1 191 197 39.8 3.8e-10 1 CL0023
Cotton_A_20400_CDS 232 335 202 373 PF00931.22 NB-ARC Domain 32 142 252 36.7 2.5e-09 1 CL0023
Cotton_A_20400_CDS 367 501 362 518 PF00931.22 NB-ARC Domain 5 148 252 82.5 2.6e-23 1 CL0023
Cotton_A_20400_CDS 565 774 551 794 PF00931.22 NB-ARC Domain 15 230 252 109.2 1.8e-31 1 CL0023
Cotton_A_28836_CDS 87 417 87 419 PF00225.23 Kinesin Domain 1 330 333 314.9 5.1e-94 1 CL0023
Cotton_A_31417_CDS 38 335 38 356 PF01276.20 OKR_DC_1 Domain 1 315 417 232.1 9.6e-69 1 CL0061
Cotton_A_31417_CDS 447 505 412 513 PF03711.15 OKR_DC_1_C Domain 49 114 132 37.2 3.1e-09 1 No_clan
Cotton_A_29999_CDS 9 242 9 257 PF01370.21 Epimerase Family 1 227 241 68.9 4.5e-19 1 CL0063
Cotton_A_03280_CDS 171 282 171 288 PF00004.29 AAA Domain 1 126 132 58.0 1.3e-15 1 CL0023
Cotton_A_03280_CDS 315 402 313 402 PF16193.5 AAA_assoc_2 Family 4 81 81 92.0 2.2e-26 1 CL0671
Cotton_A_03280_CDS 403 530 403 542 PF12002.8 MgsA_C Domain 1 126 167 184.6 1.4e-54 1 CL0604
Cotton_A_12833_CDS 7 293 7 296 PF01212.21 Beta_elim_lyase Domain 1 290 293 312.5 2.6e-93 1 CL0061
Cotton_A_27107_CDS 168 208 167 208 PF13639.6 zf-RING_2 Domain 2 44 44 42.9 4.4e-11 1 CL0229
Cotton_A_13350_CDS 25 95 25 96 PF07983.13 X8 Domain 1 75 76 77.8 7.6e-22 1 No_clan
Cotton_A_19556_CDS 104 123 104 123 PF15365.6 PNRC Motif 1 20 20 31.3 1.2e-07 1 No_clan
Cotton_A_27460_CDS 18 93 18 94 PF00199.19 Catalase Domain 1 82 383 66.2 2.8e-18 1 No_clan
Cotton_A_27460_CDS 95 296 94 298 PF00199.19 Catalase Domain 114 315 383 296.1 4.1e-88 1 No_clan
Cotton_A_27460_CDS 296 337 296 338 PF00199.19 Catalase Domain 340 382 383 23.4 2.8e-05 1 No_clan
Cotton_A_27460_CDS 363 425 361 425 PF06628.12 Catalase-rel Family 4 65 65 63.7 1.4e-17 1 No_clan
Cotton_A_28089_CDS 13 60 13 60 PF00249.31 Myb_DNA-binding Domain 1 46 46 51.9 6.2e-14 1 CL0123
Cotton_A_28089_CDS 66 111 66 111 PF00249.31 Myb_DNA-binding Domain 1 46 46 58.4 5.9e-16 1 CL0123
Cotton_A_30883_CDS 35 129 34 130 PF01657.17 Stress-antifung Family 2 94 95 71.8 5.4e-20 1 No_clan
Cotton_A_30883_CDS 155 243 147 244 PF01657.17 Stress-antifung Family 13 94 95 44.2 2.3e-11 1 No_clan
Cotton_A_30883_CDS 350 615 346 617 PF07714.17 Pkinase_Tyr Domain 5 257 259 161.2 2.7e-47 1 CL0016
Cotton_A_00138_CDS 62 124 62 124 PF00226.31 DnaJ Domain 1 63 63 42.3 5.9e-11 1 CL0392
Cotton_A_16611_CDS 34 147 33 148 PF07732.15 Cu-oxidase_3 Domain 2 117 119 144.3 1.6e-42 1 CL0026
Cotton_A_16611_CDS 160 313 159 314 PF00394.22 Cu-oxidase Domain 2 158 159 148.4 1.8e-43 1 CL0026
Cotton_A_16611_CDS 401 533 397 536 PF07731.14 Cu-oxidase_2 Domain 5 134 137 90.3 8.9e-26 1 CL0026
Cotton_A_33584_CDS 36 116 36 117 PF16845.5 SQAPI Domain 1 82 83 121.4 1.4e-35 1 CL0121
Cotton_A_26318_CDS 166 215 166 215 PF07797.14 DUF1639 Family 1 50 50 90.0 6.9e-26 1 No_clan
Cotton_A_11358_CDS 71 354 62 355 PF01095.19 Pectinesterase Family 10 297 298 247.6 1.1e-73 1 CL0268
Cotton_A_02331_CDS 79 142 79 143 PF00462.24 Glutaredoxin Domain 1 59 60 70.4 1e-19 1 CL0172
Cotton_A_21973_CDS 93 208 91 209 PF00861.22 Ribosomal_L18p Family 3 115 116 34.7 1.8e-08 1 CL0267
Cotton_A_33346_CDS 180 217 179 230 PF00013.29 KH_1 Domain 2 40 66 39.9 2.7e-10 1 CL0007
Cotton_A_38250_CDS 37 69 36 73 PF00646.33 F-box Domain 2 34 48 22.9 5.4e-05 1 CL0271
Cotton_A_32385_CDS 24 298 21 298 PF03096.14 Ndr Domain 4 283 283 316.6 9.3e-95 1 CL0028
Cotton_A_20444_CDS 1 127 1 127 PF12590.8 Acyl-thio_N Family 1 131 131 188.8 5.1e-56 1 No_clan
Cotton_A_20444_CDS 138 400 138 401 PF01643.17 Acyl-ACP_TE Family 1 247 248 271.7 4.7e-81 1 CL0050
Cotton_A_31431_CDS 13 185 13 185 PF00316.20 FBPase Domain 1 189 189 227.7 7.6e-68 1 CL0171
Cotton_A_25413_CDS 39 220 37 221 PF00722.21 Glyco_hydro_16 Domain 3 176 177 181.7 8.4e-54 1 CL0004
Cotton_A_25413_CDS 254 291 243 291 PF06955.12 XET_C Family 9 47 47 53.7 1.4e-14 1 CL0004
Cotton_A_35684_CDS 7 56 6 57 PF00847.20 AP2 Domain 2 53 54 40.3 2.8e-10 1 CL0081
Cotton_A_00570_CDS 108 254 107 256 PF02182.17 SAD_SRA Domain 2 155 157 128.0 2.4e-37 1 CL0178
Cotton_A_12164_CDS 34 217 30 218 PF00348.17 polyprenyl_synt Domain 7 185 256 25.9 4.7e-06 1 CL0613
Cotton_A_19957_CDS 5 56 5 57 PF15879.5 MWFE Family 1 53 55 39.5 4.8e-10 1 No_clan
Cotton_A_23159_CDS 51 81 51 81 PF07460.11 NUMOD3 Motif 6 36 37 25.2 1.4e-05 1 No_clan
Cotton_A_01850_CDS 35 241 35 241 PF01061.24 ABC2_membrane Family 1 210 210 133.8 5.4e-39 1 CL0181
Cotton_A_23005_CDS 86 180 81 180 PF00383.23 dCMP_cyt_deam_1 Family 7 101 101 71.0 5.8e-20 1 CL0109
Cotton_A_09660_CDS 30 68 29 76 PF02701.15 zf-Dof Family 2 40 59 80.6 6.7e-23 1 No_clan
Cotton_A_24391_CDS 47 631 47 632 PF00995.23 Sec1 Family 1 574 575 364.4 1.6e-108 1 No_clan
Cotton_A_16905_CDS 27 70 22 76 PF14111.6 DUF4283 Domain 7 49 145 27.3 2.1e-06 1 No_clan
Cotton_A_17847_CDS 36 138 34 139 PF13947.6 GUB_WAK_bind Domain 3 104 106 36.3 7.6e-09 1 No_clan
Cotton_A_17847_CDS 170 243 149 243 PF14380.6 WAK_assoc Domain 29 104 104 72.3 4.5e-20 1 No_clan
Cotton_A_17847_CDS 263 341 261 367 PF13947.6 GUB_WAK_bind Domain 4 79 106 43.9 3.2e-11 1 No_clan
Cotton_A_17847_CDS 408 485 386 485 PF14380.6 WAK_assoc Domain 27 104 104 61.1 1.4e-16 1 No_clan
Cotton_A_17847_CDS 552 821 549 823 PF00069.25 Pkinase Domain 4 260 264 161.7 2.1e-47 1 CL0016
Cotton_A_13099_CDS 271 317 271 317 PF14570.6 zf-RING_4 Domain 1 48 48 63.5 1.1e-17 1 CL0229
Cotton_A_37235_CDS 12 192 12 193 PF01251.18 Ribosomal_S7e Family 1 183 184 270.6 6e-81 1 CL0652
Cotton_A_30842_CDS 65 196 65 196 PF14365.6 Neprosin_AP Family 1 118 118 149.1 7.2e-44 1 No_clan
Cotton_A_30842_CDS 210 433 210 433 PF03080.15 Neprosin Family 1 222 222 304.5 3.5e-91 1 No_clan
Cotton_A_12297_CDS 5 93 1 96 PF02535.22 Zip Family 240 328 333 61.6 7.1e-17 1 CL0184
Cotton_A_37345_CDS 71 110 63 111 PF15801.5 zf-C6H2 Domain 8 46 47 34.4 2.1e-08 1 CL0175
Cotton_A_37345_CDS 256 587 256 587 PF03372.23 Exo_endo_phos Domain 1 233 233 100.7 8.8e-29 1 CL0530
Cotton_A_29984_CDS 36 147 27 147 PF02746.16 MR_MLE_N Domain 12 117 117 35.4 1e-08 1 CL0227
Cotton_A_29984_CDS 169 377 166 384 PF13378.6 MR_MLE_C Domain 4 213 220 123.6 8.2e-36 1 CL0256
Cotton_A_30735_CDS 70 162 69 186 PF02466.19 Tim17 Family 2 92 111 37.0 3.6e-09 1 No_clan
Cotton_A_30735_CDS 292 420 289 422 PF15982.5 TMEM135_C_rich Domain 7 132 134 31.2 2.8e-07 1 No_clan
Cotton_A_36050_CDS 59 104 59 104 PF12906.7 RINGv Domain 1 48 48 49.3 3.9e-13 1 CL0229
Cotton_A_36050_CDS 110 226 110 227 PF12428.8 DUF3675 Family 1 118 119 136.2 7.5e-40 1 No_clan
Cotton_A_27105_CDS 31 77 22 77 PF07333.12 SLR1-BP Domain 11 58 58 23.2 7.2e-05 1 CL0054
Cotton_A_35053_CDS 18 143 18 143 PF02365.15 NAM Family 1 126 126 139.4 1.1e-40 1 No_clan
Cotton_A_18190_CDS 1 79 1 80 PF14223.6 Retrotran_gag_2 Family 61 137 138 51.2 9.6e-14 1 CL0523
Cotton_A_37271_CDS 38 310 37 312 PF00248.21 Aldo_ket_red Domain 2 291 294 178.7 1.5e-52 1 No_clan
Cotton_A_22310_CDS 38 165 38 166 PF10539.9 Dev_Cell_Death Domain 1 126 127 180.8 8.3e-54 1 No_clan
Cotton_A_04710_CDS 71 212 69 259 PF01925.19 TauE Family 2 114 236 36.2 4.9e-09 1 CL0292
Cotton_A_04710_CDS 321 433 318 446 PF01925.19 TauE Family 3 109 236 43.3 3.3e-11 1 CL0292
Cotton_A_04935_CDS 8 247 7 247 PF05875.12 Ceramidase Family 2 263 263 194.4 2.3e-57 1 CL0192
Cotton_A_21654_CDS 65 171 65 171 PF01453.24 B_lectin Domain 1 105 105 127.0 3.9e-37 1 No_clan
Cotton_A_21654_CDS 204 309 203 312 PF00954.20 S_locus_glycop Domain 2 108 111 84.2 8.6e-24 1 No_clan
Cotton_A_21654_CDS 335 401 335 401 PF08276.11 PAN_2 Domain 1 67 67 74.1 7.3e-21 1 CL0168
Cotton_A_21654_CDS 422 534 398 598 PF00069.25 Pkinase Domain 90 195 264 88.6 4.4e-25 1 CL0016
Cotton_A_21654_CDS 609 651 607 651 PF11883.8 DUF3403 Family 4 46 46 34.0 2.4e-08 1 No_clan
Cotton_A_33820_CDS 16 52 14 58 PF16455.5 UBD Domain 3 38 104 29.4 7e-07 1 No_clan
Cotton_A_26653_CDS 94 318 93 322 PF04577.14 DUF563 Family 2 202 209 87.0 1.9e-24 1 No_clan
Cotton_A_18463_CDS 114 233 109 234 PF15413.6 PH_11 Domain 4 104 105 72.2 4.1e-20 1 CL0266
Cotton_A_18463_CDS 441 793 441 793 PF01237.18 Oxysterol_BP Family 1 373 373 420.4 5.2e-126 1 No_clan
Cotton_A_39943_CDS 6 48 1 49 PF04749.17 PLAC8 Family 56 98 99 35.2 1.9e-08 1 No_clan
Cotton_A_32220_CDS 80 414 64 429 PF00201.18 UDPGT Family 93 409 499 107.5 7.4e-31 1 CL0113
Cotton_A_19587_CDS 319 588 318 590 PF00069.25 Pkinase Domain 2 259 264 138.8 2.1e-40 1 CL0016
Cotton_A_40087_CDS 41 88 38 88 PF00010.26 HLH Domain 4 53 53 38.6 7.4e-10 1 No_clan
Cotton_A_11169_CDS 54 264 53 286 PF00083.24 Sugar_tr Family 2 226 452 149.3 1.6e-43 1 CL0015
Cotton_A_03897_CDS 29 75 29 75 PF00097.25 zf-C3HC4 Domain 1 41 41 31.3 1.3e-07 1 CL0229
Cotton_A_37534_CDS 468 628 464 631 PF00009.27 GTP_EFTU Domain 6 190 194 110.0 1.1e-31 1 CL0023
Cotton_A_37534_CDS 773 864 760 865 PF11987.8 IF-2 Domain 13 104 105 100.4 5.4e-29 1 No_clan
Cotton_A_35613_CDS 7 131 4 143 PF01217.20 Clat_adaptor_s Domain 4 128 142 28.9 9e-07 1 CL0212
Cotton_A_35613_CDS 159 206 159 209 PF00928.21 Adap_comp_sub Family 1 48 264 49.1 4.6e-13 1 CL0448
Cotton_A_35613_CDS 301 509 294 510 PF00928.21 Adap_comp_sub Family 49 263 264 195.8 8.4e-58 1 CL0448
Cotton_A_05869_CDS 16 104 15 104 PF13837.6 Myb_DNA-bind_4 Domain 3 90 90 70.7 1e-19 1 CL0123
Cotton_A_31966_CDS 48 108 30 148 PF18052.1 Rx_N Domain 27 87 93 67.7 7.9e-19 1 No_clan
Cotton_A_31966_CDS 183 424 181 426 PF00931.22 NB-ARC Domain 3 250 252 176.2 6.5e-52 1 CL0023
Cotton_A_05761_CDS 95 173 89 175 PF02362.21 B3 Family 16 99 101 55.8 3.2e-15 1 CL0405
Cotton_A_03320_CDS 25 75 25 76 PF13456.6 RVT_3 Domain 1 52 124 33.9 2.3e-08 1 CL0219
Cotton_A_11820_CDS 44 159 43 159 PF16983.5 MFS_MOT1 Family 2 111 111 90.6 8.4e-26 1 CL0062
Cotton_A_11820_CDS 280 398 279 398 PF16983.5 MFS_MOT1 Family 2 111 111 123.2 6.2e-36 1 CL0062
Cotton_A_03632_CDS 28 383 28 383 PF00262.18 Calreticulin Family 1 367 367 483.1 4.5e-145 1 CL0004
Cotton_A_08572_CDS 205 337 205 338 PF00004.29 AAA Domain 1 131 132 134.8 2.4e-39 1 CL0023
Cotton_A_08572_CDS 360 403 360 404 PF17862.1 AAA_lid_3 Domain 1 44 45 40.4 1.8e-10 1 CL0671
Cotton_A_23631_CDS 16 240 16 240 PF00244.20 14-3-3 Domain 1 222 222 341.2 2.4e-102 1 No_clan
Cotton_A_36449_CDS 132 307 131 308 PF00504.21 Chloroa_b-bind Family 2 160 161 145.1 2.6e-42 1 No_clan
Cotton_A_27317_CDS 1 155 1 155 PF14009.6 DUF4228 Family 1 179 179 100.7 1.2e-28 1 No_clan
Cotton_A_12920_CDS 28 482 27 486 PF00083.24 Sugar_tr Family 2 449 452 391.1 6.6e-117 1 CL0015
Cotton_A_07187_CDS 71 143 71 151 PF02823.16 ATP-synt_DE_N Domain 1 73 80 62.4 2.7e-17 1 No_clan
Cotton_A_06880_CDS 88 241 85 242 PF01553.21 Acyltransferase Family 4 134 135 69.9 1.6e-19 1 CL0228
Cotton_A_06880_CDS 253 322 250 323 PF16076.5 Acyltransf_C Family 4 72 74 67.4 8.8e-19 1 No_clan
Cotton_A_08228_CDS 72 256 72 256 PF06733.15 DEAD_2 Family 1 176 176 177.7 1.6e-52 1 CL0023
Cotton_A_08228_CDS 281 420 279 421 PF06777.11 HBB Domain 5 189 190 92.6 2.4e-26 1 No_clan
Cotton_A_08228_CDS 532 705 532 708 PF13307.6 Helicase_C_2 Domain 1 168 171 141.7 2.5e-41 1 CL0023
Cotton_A_39194_CDS 378 639 378 641 PF12697.7 Abhydrolase_6 Domain 1 218 220 65.7 8.8e-18 1 CL0028
Cotton_A_36883_CDS 25 82 21 86 PF10249.9 NDUFB10 Family 38 95 126 22.3 0.00015 1 No_clan
Cotton_A_23500_CDS 11 434 10 437 PF02458.15 Transferase Family 2 431 434 276.0 4.6e-82 1 CL0149
Cotton_A_25013_CDS 9 32 8 33 PF13912.6 zf-C2H2_6 Domain 2 25 27 22.5 8e-05 1 CL0361
Cotton_A_25013_CDS 107 130 107 131 PF13912.6 zf-C2H2_6 Domain 3 26 27 23.2 4.8e-05 1 CL0361
Cotton_A_25013_CDS 354 378 353 379 PF13912.6 zf-C2H2_6 Domain 2 26 27 24.4 2.1e-05 1 CL0361
Cotton_A_25013_CDS 433 455 433 455 PF13912.6 zf-C2H2_6 Domain 2 24 27 29.6 4.7e-07 1 CL0361
Cotton_A_01983_CDS 29 277 6 282 PF00481.21 PP2C Family 33 252 258 135.1 3.1e-39 1 CL0238
Cotton_A_40253_CDS 11 40 10 41 PF00319.18 SRF-TF Domain 2 31 48 31.6 8.2e-08 1 No_clan
Cotton_A_02363_CDS 58 171 49 175 PF02466.19 Tim17 Family 5 110 111 46.6 3.6e-12 1 No_clan
Cotton_A_02363_CDS 202 251 193 251 PF00536.30 SAM_1 Domain 12 62 64 31.5 1.8e-07 1 CL0003
Cotton_A_00680_CDS 14 40 14 40 PF13961.6 DUF4219 Domain 1 27 27 33.0 3.3e-08 1 CL0523
Cotton_A_00680_CDS 51 137 25 139 PF14223.6 Retrotran_gag_2 Family 45 129 138 62.0 4.6e-17 1 CL0523
Cotton_A_24001_CDS 2 45 1 48 PF12937.7 F-box-like Domain 2 45 48 32.1 7.7e-08 1 CL0271
Cotton_A_02727_CDS 349 550 346 608 PF00069.25 Pkinase Domain 5 205 264 78.8 4.2e-22 1 CL0016
Cotton_A_13946_CDS 85 298 83 298 PF01545.21 Cation_efflux Family 3 199 199 154.2 3.5e-45 1 No_clan
Cotton_A_13946_CDS 303 380 302 380 PF16916.5 ZT_dimer Domain 2 79 79 79.8 1.2e-22 1 No_clan
Cotton_A_27824_CDS 1 439 1 439 PF06219.12 DUF1005 Family 1 437 437 691.8 4e-208 1 No_clan
Cotton_A_24848_CDS 187 231 187 231 PF01476.20 LysM Domain 1 44 44 18.6 0.0015 1 CL0187
Cotton_A_24848_CDS 356 596 341 598 PF00069.25 Pkinase Domain 28 260 264 133.1 1.1e-38 1 CL0016
Cotton_A_19797_CDS 28 74 28 74 PF00304.20 Gamma-thionin Domain 1 47 47 64.5 7.6e-18 1 CL0054
Cotton_A_22686_CDS 94 145 94 145 PF12906.7 RINGv Domain 1 48 48 35.1 1.1e-08 1 CL0229
Cotton_A_04369_CDS 9 100 5 135 PF18052.1 Rx_N Domain 1 84 93 83.3 1.1e-23 1 No_clan
Cotton_A_04369_CDS 184 316 129 317 PF00931.22 NB-ARC Domain 89 218 252 88.8 3.2e-25 1 CL0023
Cotton_A_33546_CDS 258 294 256 295 PF00400.32 WD40 Repeat 3 37 38 14.7 0.043 1 CL0186
Cotton_A_21443_CDS 436 469 435 469 PF08880.11 QLQ Domain 2 34 35 37.4 1.6e-09 1 No_clan
Cotton_A_21443_CDS 984 1279 971 1281 PF00176.23 SNF2_N Family 50 348 350 221.8 1e-65 1 CL0023
Cotton_A_21443_CDS 1301 1412 1298 1412 PF00271.31 Helicase_C Family 4 111 111 60.2 2.2e-16 1 CL0023
Cotton_A_14883_CDS 32 102 32 102 PF00076.22 RRM_1 Domain 1 70 70 64.5 5.6e-18 1 CL0221
Cotton_A_14883_CDS 120 188 120 189 PF00076.22 RRM_1 Domain 1 69 70 76.7 8.6e-22 1 CL0221
Cotton_A_14883_CDS 211 279 211 280 PF00076.22 RRM_1 Domain 1 69 70 86.9 6e-25 1 CL0221
Cotton_A_14883_CDS 314 382 314 383 PF00076.22 RRM_1 Domain 1 69 70 71.0 5.5e-20 1 CL0221
Cotton_A_14883_CDS 527 593 526 593 PF00658.18 PABP Family 2 68 68 90.7 4.9e-26 1 No_clan
Cotton_A_28630_CDS 30 81 29 82 PF00847.20 AP2 Domain 2 53 54 48.7 6.6e-13 1 CL0081
Cotton_A_03197_CDS 521 616 518 638 PF01348.21 Intron_maturas2 Family 5 103 140 43.3 3.2e-11 1 CL0359
Cotton_A_17809_CDS 16 212 16 219 PF01557.18 FAA_hydrolase Family 1 213 218 186.8 4.2e-55 1 CL0377
Cotton_A_08488_CDS 4 192 4 192 PF01956.16 EMC3_TMCO1 Family 1 170 170 175.1 1e-51 1 CL0376
Cotton_A_20619_CDS 6 138 1 139 PF00892.20 EamA Family 11 136 137 33.4 4.4e-08 1 CL0184
Cotton_A_20619_CDS 183 302 166 304 PF00892.20 EamA Family 20 135 137 35.0 1.4e-08 1 CL0184
Cotton_A_08814_CDS 45 202 44 202 PF05078.12 DUF679 Family 2 163 163 191.8 7.9e-57 1 No_clan
Cotton_A_19153_CDS 7 90 7 94 PF02970.16 TBCA Domain 1 85 88 95.4 1.9e-27 1 No_clan
Cotton_A_33121_CDS 2 200 1 203 PF00067.22 p450 Domain 115 320 463 76.8 1.4e-21 1 No_clan
Cotton_A_33121_CDS 202 405 195 407 PF00067.22 p450 Domain 111 321 463 76.1 2.3e-21 1 No_clan
Cotton_A_33121_CDS 406 609 399 614 PF00067.22 p450 Domain 111 321 463 72.2 3.4e-20 1 No_clan
Cotton_A_03143_CDS 10 226 9 252 PF00069.25 Pkinase Domain 2 212 264 92.7 2.4e-26 1 CL0016
Cotton_A_00674_CDS 33 82 9 84 PF17067.5 RPS31 Family 47 96 99 43.2 3.3e-11 1 No_clan
Cotton_A_20352_CDS 146 198 113 204 PF01764.25 Lipase_3 Family 47 103 142 27.3 2.6e-06 1 CL0028
Cotton_A_24241_CDS 100 185 100 197 PF03552.14 Cellulose_synt Family 1 86 722 111.4 4.5e-32 1 CL0110
Cotton_A_35582_CDS 41 106 24 107 PF06127.11 DUF962 Family 33 94 95 60.9 9.6e-17 1 No_clan
Cotton_A_01708_CDS 180 267 180 267 PF03088.16 Str_synth Family 1 89 89 100.3 5e-29 1 CL0186
Cotton_A_30556_CDS 22 85 22 85 PF01918.21 Alba Family 1 67 67 50.3 1.5e-13 1 CL0441
Cotton_A_22157_CDS 130 247 119 249 PF02577.14 DNase-RNase Family 13 126 129 77.3 7.7e-22 1 No_clan
Cotton_A_22157_CDS 282 310 281 312 PF02151.19 UVR Family 6 34 36 20.8 0.00023 1 CL0671
Cotton_A_31945_CDS 15 113 14 114 PF01453.24 B_lectin Domain 2 104 105 101.5 3.3e-29 1 No_clan
Cotton_A_31945_CDS 146 253 146 254 PF00954.20 S_locus_glycop Domain 1 110 111 92.7 1.9e-26 1 No_clan
Cotton_A_31945_CDS 307 348 271 348 PF08276.11 PAN_2 Domain 23 67 67 38.4 1e-09 1 CL0168
Cotton_A_31945_CDS 469 736 466 736 PF07714.17 Pkinase_Tyr Domain 4 259 259 153.3 7.1e-45 1 CL0016
Cotton_A_17557_CDS 34 108 34 109 PF07983.13 X8 Domain 1 75 76 75.2 4.7e-21 1 No_clan
Cotton_A_08808_CDS 162 218 162 218 PF11961.8 DUF3475 Family 1 57 57 87.2 5.5e-25 1 No_clan
Cotton_A_08808_CDS 383 467 382 467 PF05003.12 DUF668 Family 2 89 89 115.1 1.5e-33 1 No_clan
Cotton_A_31321_CDS 7 130 5 130 PF00410.19 Ribosomal_S8 Domain 3 127 127 78.0 5.9e-22 1 No_clan
Cotton_A_30573_CDS 57 125 51 131 PF12796.7 Ank_2 Repeat 20 76 83 38.1 1.8e-09 1 CL0465
Cotton_A_27101_CDS 213 257 213 257 PF12552.8 DUF3741 Family 1 45 45 59.5 2.3e-16 1 No_clan
Cotton_A_27101_CDS 487 634 486 634 PF14309.6 DUF4378 Family 2 165 165 105.3 4.3e-30 1 No_clan
Cotton_A_10647_CDS 25 190 25 191 PF14826.6 FACT-Spt16_Nlob Domain 1 160 161 160.1 3.8e-47 1 CL0356
Cotton_A_10647_CDS 207 436 206 438 PF00557.24 Peptidase_M24 Domain 3 207 209 103.4 1.3e-29 1 No_clan
Cotton_A_10647_CDS 554 708 554 708 PF08644.11 SPT16 Family 1 151 151 175.2 9.4e-52 1 CL0266
Cotton_A_10647_CDS 840 921 834 922 PF08512.12 Rtt106 Domain 10 88 89 60.3 1.8e-16 1 CL0266
Cotton_A_20196_CDS 33 87 30 88 PF00403.26 HMA Domain 3 61 62 51.5 1e-13 1 No_clan
Cotton_A_30266_CDS 8 262 8 262 PF00069.25 Pkinase Domain 1 264 264 220.4 2.7e-65 1 CL0016
Cotton_A_19118_CDS 16 405 13 405 PF01080.17 Presenilin Family 5 398 398 418.8 1.9e-125 1 CL0130
Cotton_A_02501_CDS 49 160 49 161 PF14226.6 DIOX_N Family 1 117 118 105.9 2e-30 1 CL0029
Cotton_A_02501_CDS 209 307 207 307 PF03171.20 2OG-FeII_Oxy Domain 3 101 101 99.2 1.5e-28 1 CL0029
Cotton_A_01959_CDS 72 131 68 134 PF03937.16 Sdh5 Domain 11 70 73 54.8 6.6e-15 1 No_clan
Cotton_A_18618_CDS 113 137 113 139 PF08213.11 DUF1713 Domain 1 25 33 33.3 3.4e-08 1 No_clan
Cotton_A_34471_CDS 160 186 160 187 PF02985.22 HEAT Repeat 1 27 31 23.5 4.1e-05 1 CL0020
Cotton_A_34471_CDS 284 500 283 501 PF12348.8 CLASP_N Family 2 226 227 150.4 5.6e-44 1 CL0020
Cotton_A_34471_CDS 796 985 785 996 PF12348.8 CLASP_N Family 16 207 227 38.5 9.2e-10 1 CL0020
Cotton_A_05432_CDS 6 240 6 240 PF06888.12 Put_Phosphatase Family 1 234 234 311.2 3.7e-93 1 CL0137
Cotton_A_39653_CDS 69 390 68 390 PF03405.14 FA_desaturase_2 Domain 2 326 326 517.6 9.5e-156 1 CL0044
Cotton_A_08569_CDS 120 146 117 146 PF07460.11 NUMOD3 Motif 11 37 37 25.9 8.2e-06 1 No_clan
Cotton_A_08451_CDS 26 165 8 165 PF00582.26 Usp Domain 11 141 141 79.3 3.8e-22 1 CL0039
Cotton_A_39181_CDS 3 180 3 181 PF04752.12 ChaC Family 1 178 179 152.1 1.6e-44 1 CL0278
Cotton_A_10107_CDS 6 49 5 49 PF12515.8 CaATP_NAI Family 2 45 45 66.4 1.2e-18 1 No_clan
Cotton_A_10107_CDS 115 182 114 182 PF00690.26 Cation_ATPase_N Domain 2 69 69 48.5 5.1e-13 1 No_clan
Cotton_A_10107_CDS 236 428 230 430 PF00122.20 E1-E2_ATPase Family 7 179 181 138.1 2.2e-40 1 No_clan
Cotton_A_10107_CDS 448 769 446 769 PF00702.26 Hydrolase Domain 3 210 210 71.4 1.2e-19 1 CL0137
Cotton_A_10107_CDS 840 1013 839 1014 PF00689.21 Cation_ATPase_C Family 2 181 182 140.3 5.3e-41 1 No_clan
Cotton_A_01831_CDS 266 315 264 316 PF00847.20 AP2 Domain 3 53 54 33.2 4.4e-08 1 CL0081
Cotton_A_20735_CDS 51 118 45 155 PF00128.24 Alpha-amylase Domain 14 81 337 33.8 2.6e-08 1 CL0058
Cotton_A_20735_CDS 326 384 326 384 PF07821.12 Alpha-amyl_C2 Domain 1 58 58 70.8 8.4e-20 1 CL0369
Cotton_A_36325_CDS 28 345 27 346 PF00332.18 Glyco_hydro_17 Domain 2 312 313 202.6 1.1e-59 1 CL0058
Cotton_A_36325_CDS 364 436 364 436 PF07983.13 X8 Domain 1 76 76 57.4 1.8e-15 1 No_clan
Cotton_A_06800_CDS 172 488 168 491 PF16529.5 Ge1_WD40 Domain 6 325 329 77.4 9.2e-22 1 CL0186
Cotton_A_39745_CDS 71 162 71 170 PF03552.14 Cellulose_synt Family 1 92 722 105.7 2.4e-30 1 CL0110
Cotton_A_39745_CDS 176 215 161 220 PF03552.14 Cellulose_synt Family 153 192 722 30.4 1.4e-07 1 CL0110
Cotton_A_39745_CDS 233 350 229 356 PF03552.14 Cellulose_synt Family 413 531 722 84.9 4.8e-24 1 CL0110
Cotton_A_20883_CDS 89 187 89 187 PF04526.13 DUF568 Family 1 101 101 79.6 2.3e-22 1 No_clan
Cotton_A_20883_CDS 206 331 206 335 PF03188.16 Cytochrom_B561 Family 1 130 137 26.6 5.5e-06 1 CL0328
Cotton_A_31270_CDS 218 525 217 526 PF04515.12 Choline_transpo Family 2 325 326 204.8 1.9e-60 1 No_clan
Cotton_A_13373_CDS 1 62 1 62 PF03719.15 Ribosomal_S5_C Domain 11 72 72 59.9 1.2e-16 1 CL0329
Cotton_A_04519_CDS 157 270 156 272 PF07732.15 Cu-oxidase_3 Domain 2 117 119 128.7 1.1e-37 1 CL0026
Cotton_A_04519_CDS 284 432 282 433 PF00394.22 Cu-oxidase Domain 3 158 159 108.8 2.8e-31 1 CL0026
Cotton_A_11313_CDS 69 208 69 208 PF02365.15 NAM Family 1 126 126 81.2 1.2e-22 1 No_clan
Cotton_A_13604_CDS 22 1028 21 1047 PF02463.19 SMC_N Domain 2 197 220 68.2 6.7e-19 1 CL0023
Cotton_A_21287_CDS 172 379 169 438 PF07714.17 Pkinase_Tyr Domain 4 216 259 143.7 6e-42 1 CL0016
Cotton_A_28676_CDS 35 132 35 132 PF04749.17 PLAC8 Family 1 99 99 84.3 9.2e-24 1 No_clan
Cotton_A_39781_CDS 45 173 45 231 PF07786.12 DUF1624 Family 1 122 223 31.5 1.2e-07 1 CL0316
Cotton_A_04901_CDS 25 75 24 75 PF00249.31 Myb_DNA-binding Domain 2 46 46 26.7 4.7e-06 1 CL0123
Cotton_A_04901_CDS 120 165 119 165 PF14379.6 Myb_CC_LHEQLE Family 2 48 48 58.8 3.2e-16 1 No_clan
Cotton_A_00439_CDS 32 141 28 141 PF00164.25 Ribosom_S12_S23 Family 4 114 114 167.3 7.8e-50 1 CL0021
Cotton_A_04744_CDS 165 314 138 329 PF00566.18 RabGAP-TBC Family 44 193 215 116.0 1.8e-33 1 No_clan
Cotton_A_18908_CDS 621 824 621 827 PF07842.12 GCFC Family 1 270 277 110.9 8.4e-32 1 No_clan
Cotton_A_33842_CDS 63 423 61 424 PF01094.28 ANF_receptor Family 3 353 354 280.3 2.3e-83 1 CL0144
Cotton_A_33842_CDS 495 822 484 823 PF00497.20 SBP_bac_3 Domain 10 224 225 68.6 5e-19 1 CL0177
Cotton_A_33842_CDS 600 854 599 854 PF00060.26 Lig_chan Family 2 149 149 132.1 1.4e-38 1 CL0030
Cotton_A_04555_CDS 4 54 2 54 PF14111.6 DUF4283 Domain 95 145 145 51.3 8.7e-14 1 No_clan
Cotton_A_04887_CDS 10 54 1 56 PF14538.6 Raptor_N Domain 39 83 147 35.6 7.8e-09 1 CL0093
Cotton_A_04515_CDS 35 139 34 141 PF07732.15 Cu-oxidase_3 Domain 3 117 119 88.8 2.4e-25 1 CL0026
Cotton_A_04515_CDS 153 289 151 291 PF00394.22 Cu-oxidase Domain 3 157 159 76.6 2.3e-21 1 CL0026
Cotton_A_07354_CDS 32 111 32 112 PF13774.6 Longin Domain 1 83 84 82.8 1.3e-23 1 No_clan
Cotton_A_07354_CDS 129 215 127 215 PF00957.21 Synaptobrevin Family 3 89 89 114.3 1.7e-33 1 CL0445
Cotton_A_35386_CDS 1 34 1 49 PF03105.19 SPX Domain 1 34 384 41.9 1.2e-10 1 No_clan
Cotton_A_12886_CDS 32 209 31 214 PF00139.19 Lectin_legB Domain 2 169 249 173.5 5.4e-51 1 CL0004
Cotton_A_34447_CDS 33 381 33 381 PF00282.19 Pyridoxal_deC Domain 1 375 375 363.6 9e-109 1 CL0061
Cotton_A_34908_CDS 393 533 389 533 PF07714.17 Pkinase_Tyr Domain 6 145 259 83.0 2e-23 1 CL0016
Cotton_A_06483_CDS 285 376 285 377 PF00564.24 PB1 Domain 1 83 84 67.6 6.6e-19 1 CL0072
Cotton_A_25760_CDS 9 56 8 56 PF01679.17 Pmp3 Family 3 49 49 62.6 2.9e-17 1 No_clan
Cotton_A_08055_CDS 877 937 877 947 PF00004.29 AAA Domain 1 57 132 56.2 4.5e-15 1 CL0023
Cotton_A_01464_CDS 152 243 134 248 PF00083.24 Sugar_tr Family 49 142 452 34.5 1e-08 1 CL0015
Cotton_A_01464_CDS 245 500 242 504 PF00083.24 Sugar_tr Family 189 447 452 46.0 3.4e-12 1 CL0015
Cotton_A_04558_CDS 84 595 82 596 PF04129.12 Vps52 Family 3 507 508 570.9 2.4e-171 1 CL0295
Cotton_A_21225_CDS 18 282 16 283 PF00069.25 Pkinase Domain 4 260 264 178.1 2.2e-52 1 CL0016
Cotton_A_18535_CDS 1 37 1 38 PF01775.17 Ribosomal_L18A Domain 84 120 121 39.8 4.1e-10 1 No_clan
Cotton_A_28613_CDS 16 282 16 282 PF00268.21 Ribonuc_red_sm Domain 1 279 279 392.4 1.1e-117 1 CL0044
Cotton_A_01644_CDS 168 326 167 326 PF04678.13 MCU Family 2 176 176 173.6 4e-51 1 No_clan
Cotton_A_00610_CDS 12 107 5 107 PF02519.14 Auxin_inducible Family 1 90 90 90.5 5.6e-26 1 No_clan
Cotton_A_24615_CDS 30 165 29 166 PF05903.14 Peptidase_C97 Domain 2 150 151 151.1 2e-44 1 CL0125
Cotton_A_25340_CDS 37 279 37 297 PF00657.22 Lipase_GDSL Family 1 160 200 33.8 3.1e-08 1 CL0264
Cotton_A_30014_CDS 81 177 79 179 PF00153.27 Mito_carr Family 3 95 97 80.8 5.2e-23 1 No_clan
Cotton_A_30014_CDS 185 279 184 282 PF00153.27 Mito_carr Family 2 93 97 84.4 3.8e-24 1 No_clan
Cotton_A_30014_CDS 287 371 285 377 PF00153.27 Mito_carr Family 4 91 97 56.8 1.6e-15 1 No_clan
Cotton_A_29672_CDS 14 62 14 62 PF00249.31 Myb_DNA-binding Domain 1 46 46 55.0 6.7e-15 1 CL0123
Cotton_A_29672_CDS 69 111 68 113 PF00249.31 Myb_DNA-binding Domain 2 44 46 37.5 2e-09 1 CL0123
Cotton_A_29851_CDS 287 652 287 652 PF03514.14 GRAS Family 1 374 374 438.8 1.5e-131 1 CL0063
Cotton_A_00715_CDS 198 330 197 331 PF07526.11 POX Domain 2 135 136 172.9 4.9e-51 1 No_clan
Cotton_A_00715_CDS 399 438 399 438 PF05920.11 Homeobox_KN Family 1 40 40 62.9 1.8e-17 1 CL0123
Cotton_A_14336_CDS 2 117 1 117 PF03140.15 DUF247 Family 280 397 397 107.7 7.4e-31 1 No_clan
Cotton_A_08101_CDS 170 209 170 209 PF00805.22 Pentapeptide Repeat 1 40 40 35.9 4.2e-09 1 CL0505
Cotton_A_26929_CDS 30 83 28 85 PF11717.8 Tudor-knot Family 3 53 55 41.8 7.4e-11 1 CL0049
Cotton_A_26929_CDS 139 307 136 309 PF05712.13 MRG Family 2 196 198 168.0 1.6e-49 1 No_clan
Cotton_A_20405_CDS 42 161 9 161 PF04885.13 Stig1 Family 34 139 139 113.6 9.6e-33 1 No_clan
Cotton_A_15729_CDS 1 72 1 72 PF10890.8 Cyt_b-c1_8 Family 1 72 72 127.7 1.6e-37 1 CL0429
Cotton_A_07469_CDS 64 109 63 112 PF13833.6 EF-hand_8 Domain 2 50 55 21.5 0.00015 1 CL0220
Cotton_A_07469_CDS 122 187 121 193 PF13499.6 EF-hand_7 Domain 2 65 71 36.2 6.2e-09 1 CL0220
Cotton_A_14062_CDS 174 321 173 321 PF04043.15 PMEI Domain 2 154 154 68.8 6.3e-19 1 No_clan
Cotton_A_14062_CDS 379 674 379 675 PF01095.19 Pectinesterase Family 1 297 298 458.4 6.9e-138 1 CL0268
Cotton_A_27848_CDS 15 169 13 189 PF00743.19 FMO-like Family 3 149 532 63.2 1.6e-17 1 CL0063
Cotton_A_27848_CDS 253 447 188 450 PF00743.19 FMO-like Family 258 443 532 33.1 2e-08 1 CL0063
Cotton_A_27338_CDS 2 55 1 58 PF03071.15 GNT-I Family 312 362 434 48.9 4e-13 1 CL0110
Cotton_A_27338_CDS 58 93 54 94 PF03071.15 GNT-I Family 399 433 434 32.1 5e-08 1 CL0110
Cotton_A_16407_CDS 155 170 152 172 PF00612.27 IQ Motif 4 19 21 13.7 0.04 1 CL0220
Cotton_A_16407_CDS 178 192 175 194 PF00612.27 IQ Motif 5 19 21 16.5 0.0052 1 CL0220
Cotton_A_16407_CDS 790 879 772 892 PF13178.6 DUF4005 Family 2 84 93 37.4 3.1e-09 1 No_clan
Cotton_A_02939_CDS 17 141 16 141 PF10539.9 Dev_Cell_Death Domain 2 127 127 167.3 1.3e-49 1 No_clan
Cotton_A_08667_CDS 33 98 33 110 PF05922.16 Inhibitor_I9 Domain 1 68 82 52.8 4.8e-14 1 CL0570
Cotton_A_08667_CDS 135 575 135 597 PF00082.22 Peptidase_S8 Domain 1 287 298 161.9 2e-47 1 No_clan
Cotton_A_08667_CDS 649 747 649 747 PF17766.1 fn3_6 Domain 1 99 99 75.6 2.7e-21 1 CL0159
Cotton_A_40250_CDS 289 476 285 477 PF07714.17 Pkinase_Tyr Domain 5 196 259 130.9 4.9e-38 1 CL0016
Cotton_A_36848_CDS 451 677 450 679 PF04842.12 DUF639 Family 2 229 231 290.0 1.1e-86 1 CL0484
Cotton_A_24434_CDS 94 287 92 290 PF04278.12 Tic22 Family 56 243 246 263.0 2.3e-78 1 No_clan
Cotton_A_04983_CDS 37 446 37 446 PF04563.15 RNA_pol_Rpb2_1 Family 1 203 203 253.8 9.7e-76 1 No_clan
Cotton_A_04983_CDS 207 398 206 398 PF04561.14 RNA_pol_Rpb2_2 Domain 2 190 190 193.8 2.2e-57 1 No_clan
Cotton_A_04983_CDS 471 535 471 535 PF04565.16 RNA_pol_Rpb2_3 Domain 1 68 68 88.9 1.8e-25 1 No_clan
Cotton_A_04983_CDS 570 631 570 631 PF04566.13 RNA_pol_Rpb2_4 Domain 1 62 62 75.6 2.6e-21 1 No_clan
Cotton_A_04983_CDS 656 707 656 707 PF04567.17 RNA_pol_Rpb2_5 Domain 1 58 58 66.5 2.3e-18 1 No_clan
Cotton_A_04983_CDS 714 1084 714 1084 PF00562.28 RNA_pol_Rpb2_6 Domain 1 390 390 421.9 2.4e-126 1 CL0410
Cotton_A_04983_CDS 1086 1177 1086 1178 PF04560.20 RNA_pol_Rpb2_7 Domain 1 86 87 124.9 1.3e-36 1 No_clan
Cotton_A_34936_CDS 65 214 63 214 PF00190.22 Cupin_1 Domain 3 151 151 157.9 1.3e-46 1 CL0029
Cotton_A_35606_CDS 21 83 21 83 PF00226.31 DnaJ Domain 1 63 63 89.3 1.3e-25 1 CL0392
Cotton_A_01816_CDS 80 144 80 144 PF00333.20 Ribosomal_S5 Domain 1 65 65 104.3 2.3e-30 1 CL0196
Cotton_A_01816_CDS 163 229 163 234 PF03719.15 Ribosomal_S5_C Domain 1 66 72 84.8 2e-24 1 CL0329
Cotton_A_02435_CDS 16 63 16 63 PF00249.31 Myb_DNA-binding Domain 1 46 46 51.1 1.1e-13 1 CL0123
Cotton_A_02435_CDS 69 114 69 114 PF00249.31 Myb_DNA-binding Domain 1 46 46 52.7 3.6e-14 1 CL0123
Cotton_A_10691_CDS 7 155 6 155 PF00582.26 Usp Domain 3 141 141 110.9 7.1e-32 1 CL0039
Cotton_A_11956_CDS 20 65 18 67 PF13041.6 PPR_2 Repeat 6 48 50 30.1 3.9e-07 1 CL0020
Cotton_A_11956_CDS 92 124 92 125 PF12854.7 PPR_1 Repeat 1 33 34 27.0 2.5e-06 1 CL0020
Cotton_A_11956_CDS 132 180 132 181 PF13041.6 PPR_2 Repeat 1 49 50 42.0 7.7e-11 1 CL0020
Cotton_A_11956_CDS 203 229 200 231 PF12854.7 PPR_1 Repeat 6 32 34 27.8 1.5e-06 1 CL0020
Cotton_A_18409_CDS 74 266 74 267 PF14543.6 TAXi_N Domain 1 177 178 103.5 1.5e-29 1 CL0129
Cotton_A_18409_CDS 297 465 296 466 PF14541.6 TAXi_C Domain 2 160 161 101.3 4.6e-29 1 CL0129
Cotton_A_03557_CDS 169 538 168 539 PF00999.21 Na_H_Exchanger Family 2 381 381 240.9 1.8e-71 1 CL0064
Cotton_A_16037_CDS 80 597 80 597 PF00082.22 Peptidase_S8 Domain 1 298 298 153.1 9.5e-45 1 No_clan
Cotton_A_16037_CDS 651 743 651 743 PF17766.1 fn3_6 Domain 1 99 99 54.0 1.4e-14 1 CL0159
Cotton_A_10381_CDS 250 427 249 427 PF15469.6 Sec5 Family 2 190 190 156.3 7.9e-46 1 CL0295
Cotton_A_31472_CDS 423 451 423 452 PF00641.18 zf-RanBP Domain 1 29 30 35.8 3.4e-09 1 CL0167
Cotton_A_31472_CDS 457 484 456 485 PF00641.18 zf-RanBP Domain 2 29 30 20.9 0.00016 1 CL0167
Cotton_A_14011_CDS 92 379 92 380 PF01370.21 Epimerase Family 1 238 241 77.1 1.4e-21 1 CL0063
Cotton_A_23721_CDS 23 78 22 78 PF00046.29 Homeodomain Domain 2 57 57 49.5 2.7e-13 1 CL0123
Cotton_A_27319_CDS 105 166 78 196 PF00566.18 RabGAP-TBC Family 44 105 215 49.6 3.7e-13 1 No_clan
Cotton_A_25035_CDS 30 69 30 69 PF08038.12 Tom7 Family 1 41 41 62.7 1.8e-17 1 No_clan
Cotton_A_32906_CDS 137 192 67 200 PF05208.13 ALG3 Family 282 337 358 67.5 1.4e-18 1 CL0111
Cotton_A_34301_CDS 10 85 4 142 PF00069.25 Pkinase Domain 124 200 264 48.7 6.4e-13 1 CL0016
Cotton_A_03570_CDS 72 195 72 200 PF07967.13 zf-C3HC Domain 1 128 133 111.0 4.1e-32 1 CL0417
Cotton_A_24896_CDS 16 191 16 191 PF02301.18 HORMA Domain 1 212 212 72.3 4e-20 1 CL0651
Cotton_A_00330_CDS 15 124 12 125 PF01398.21 JAB Family 4 117 118 104.1 4.4e-30 1 CL0366
Cotton_A_00330_CDS 174 285 174 285 PF13012.6 MitMem_reg Family 1 112 112 128.1 1.9e-37 1 No_clan
Cotton_A_35546_CDS 2 432 1 436 PF02458.15 Transferase Family 2 430 434 336.3 2.3e-100 1 CL0149
Cotton_A_05097_CDS 84 367 84 367 PF01643.17 Acyl-ACP_TE Family 1 248 248 303.6 8.9e-91 1 CL0050
Cotton_A_16245_CDS 90 136 84 139 PF00571.28 CBS Domain 7 53 57 28.5 1.5e-06 1 No_clan
Cotton_A_16245_CDS 150 194 150 201 PF00571.28 CBS Domain 1 46 57 29.5 7.7e-07 1 No_clan
Cotton_A_16245_CDS 258 304 251 307 PF00571.28 CBS Domain 6 53 57 33.8 3.5e-08 1 No_clan
Cotton_A_16245_CDS 318 369 318 373 PF00571.28 CBS Domain 1 52 57 29.8 6.3e-07 1 No_clan
Cotton_A_16245_CDS 438 518 435 520 PF00564.24 PB1 Domain 4 82 84 50.4 1.6e-13 1 CL0072
Cotton_A_32658_CDS 32 612 24 618 PF04113.14 Gpi16 Family 10 552 559 592.1 9.7e-178 1 No_clan
Cotton_A_34453_CDS 25 76 20 77 PF00403.26 HMA Domain 7 61 62 49.3 5.1e-13 1 No_clan
Cotton_A_15292_CDS 47 248 22 252 PF03896.16 TRAP_alpha Family 62 268 285 100.2 1.2e-28 1 No_clan
Cotton_A_39642_CDS 230 388 229 391 PF00270.29 DEAD Domain 2 172 176 30.3 3.1e-07 1 CL0023
Cotton_A_05773_CDS 25 276 22 289 PF14576.6 SEO_N Family 6 270 287 105.5 2.7e-30 1 No_clan
Cotton_A_05773_CDS 432 664 430 665 PF14577.6 SEO_C Family 3 231 232 152.7 1.1e-44 1 No_clan
Cotton_A_12351_CDS 38 465 37 475 PF00067.22 p450 Domain 2 439 463 174.3 3.7e-51 1 No_clan
Cotton_A_26552_CDS 58 120 58 120 PF00280.18 potato_inhibit Domain 1 64 64 93.9 7.1e-27 1 CL0367
Cotton_A_20187_CDS 211 477 207 478 PF07714.17 Pkinase_Tyr Domain 6 258 259 178.2 1.8e-52 1 CL0016
Cotton_A_28271_CDS 1 249 1 250 PF05742.12 TANGO2 Family 1 252 253 243.1 4.5e-72 1 No_clan
Cotton_A_39119_CDS 53 507 52 512 PF00067.22 p450 Domain 2 458 463 290.8 1.7e-86 1 No_clan
Cotton_A_34132_CDS 88 164 75 164 PF02225.22 PA Family 17 89 89 36.2 4.7e-09 1 CL0364
Cotton_A_34132_CDS 240 519 236 521 PF04258.13 Peptidase_A22B Family 5 282 284 280.1 2.2e-83 1 CL0130
Cotton_A_25665_CDS 22 102 22 106 PF00072.24 Response_reg Domain 1 81 112 61.3 8.6e-17 1 CL0304
Cotton_A_14485_CDS 41 133 40 135 PF13943.6 WPP Domain 2 98 99 134.0 2e-39 1 No_clan
Cotton_A_37986_CDS 20 192 19 194 PF03208.19 PRA1 Family 2 141 143 147.5 1.9e-43 1 No_clan
Cotton_A_02874_CDS 103 121 101 121 PF00612.27 IQ Motif 3 21 21 22.3 7.1e-05 1 CL0220
Cotton_A_32283_CDS 63 155 62 156 PF10551.9 MULE Domain 2 95 96 79.8 1.5e-22 1 CL0219
Cotton_A_32283_CDS 351 379 331 379 PF04434.17 SWIM Domain 12 40 40 43.3 2.1e-11 1 No_clan
Cotton_A_29358_CDS 21 147 19 147 PF02365.15 NAM Family 2 126 126 122.1 2.6e-35 1 No_clan
Cotton_A_24654_CDS 1 186 1 216 PF07795.11 DUF1635 Family 22 191 224 161.3 3.1e-47 1 No_clan
Cotton_A_03321_CDS 150 208 150 208 PF02045.15 CBFB_NFYA Family 1 56 56 85.2 3.3e-24 1 No_clan
Cotton_A_38798_CDS 56 110 54 111 PF00046.29 Homeodomain Domain 2 56 57 61.4 5.5e-17 1 CL0123
Cotton_A_38798_CDS 260 479 259 482 PF01852.19 START Domain 2 206 209 152.0 1.4e-44 1 CL0209
Cotton_A_07918_CDS 50 318 46 321 PF00664.23 ABC_membrane Family 5 271 274 166.8 7.4e-49 1 CL0241
Cotton_A_07918_CDS 389 537 388 537 PF00005.27 ABC_tran Domain 2 137 137 114.7 4.5e-33 1 CL0023
Cotton_A_07918_CDS 686 957 685 957 PF00664.23 ABC_membrane Family 3 274 274 155.7 1.8e-45 1 CL0241
Cotton_A_07918_CDS 1023 1171 1022 1171 PF00005.27 ABC_tran Domain 2 137 137 118.1 4e-34 1 CL0023
Cotton_A_36111_CDS 166 322 134 322 PF00544.19 Pec_lyase_C Domain 58 211 211 70.2 1.8e-19 1 CL0268
Cotton_A_15901_CDS 132 195 132 200 PF00005.27 ABC_tran Domain 1 65 137 32.2 1.3e-07 1 CL0023
Cotton_A_15901_CDS 384 591 381 591 PF01061.24 ABC2_membrane Family 4 210 210 138.1 2.5e-40 1 CL0181
Cotton_A_38519_CDS 1 70 1 70 PF08583.10 Cmc1 Family 1 69 69 56.8 1.7e-15 1 CL0351
Cotton_A_32773_CDS 7 105 7 106 PF03195.14 LOB Family 1 98 99 123.0 5.7e-36 1 No_clan
Cotton_A_31940_CDS 49 156 49 156 PF01453.24 B_lectin Domain 1 105 105 116.3 8.2e-34 1 No_clan
Cotton_A_31940_CDS 188 297 188 297 PF00954.20 S_locus_glycop Domain 1 111 111 79.4 2.6e-22 1 No_clan
Cotton_A_31940_CDS 313 377 312 377 PF08276.11 PAN_2 Domain 1 67 67 69.7 1.6e-19 1 CL0168
Cotton_A_31940_CDS 423 696 420 700 PF07714.17 Pkinase_Tyr Domain 4 255 259 163.4 5.8e-48 1 CL0016
Cotton_A_31940_CDS 703 749 702 749 PF11883.8 DUF3403 Family 3 46 46 35.6 7.3e-09 1 No_clan
Cotton_A_26834_CDS 211 450 52 455 PF00201.18 UDPGT Family 193 417 499 86.2 2.1e-24 1 CL0113
Cotton_A_05656_CDS 22 72 22 73 PF00847.20 AP2 Domain 1 53 54 44.9 1e-11 1 CL0081
Cotton_A_29356_CDS 142 203 140 224 PF02365.15 NAM Family 2 65 126 43.5 5.3e-11 1 No_clan
Cotton_A_16450_CDS 64 151 64 152 PF03330.18 DPBB_1 Domain 1 82 83 77.4 7.5e-22 1 CL0199
Cotton_A_16450_CDS 163 240 163 240 PF01357.21 Pollen_allerg_1 Domain 1 80 80 89.4 1.2e-25 1 CL0159
Cotton_A_05080_CDS 152 195 148 195 PF02234.19 CDI Family 5 49 49 63.7 1.3e-17 1 No_clan
Cotton_A_17480_CDS 11 173 9 184 PF03357.21 Snf7 Family 3 167 173 45.5 6.1e-12 1 CL0235
Cotton_A_18195_CDS 73 182 73 184 PF08167.12 RIX1 Domain 86 186 188 48.4 9e-13 1 CL0020
Cotton_A_00006_CDS 49 796 49 796 PF05664.11 DUF810 Family 1 686 686 962.4 1.5e-289 1 No_clan
Cotton_A_22177_CDS 8 178 8 179 PF00071.22 Ras Domain 1 161 162 176.3 3.4e-52 1 CL0023
Cotton_A_12745_CDS 45 321 43 321 PF03619.16 Solute_trans_a Family 4 265 265 291.9 4.5e-87 1 No_clan
Cotton_A_37600_CDS 115 202 111 226 PF13306.6 LRR_5 Repeat 11 94 128 21.8 0.00014 1 CL0022
Cotton_A_37600_CDS 213 273 213 274 PF13855.6 LRR_8 Repeat 1 60 61 38.9 5.3e-10 1 CL0022
Cotton_A_37600_CDS 291 346 287 346 PF13855.6 LRR_8 Repeat 6 61 61 33.2 3.1e-08 1 CL0022
Cotton_A_37600_CDS 382 403 380 403 PF13516.6 LRR_6 Repeat 3 24 24 18.2 0.0017 1 CL0022
Cotton_A_37600_CDS 455 515 454 515 PF13855.6 LRR_8 Repeat 2 61 61 33.2 3.3e-08 1 CL0022
Cotton_A_04122_CDS 51 308 51 309 PF00685.27 Sulfotransfer_1 Domain 1 266 267 205.0 1.5e-60 1 CL0023
Cotton_A_31935_CDS 35 117 35 117 PF00189.20 Ribosomal_S3_C Domain 1 83 83 100.2 6.8e-29 1 No_clan
Cotton_A_05832_CDS 9 136 9 136 PF02365.15 NAM Family 1 126 126 128.3 3.1e-37 1 No_clan
Cotton_A_15545_CDS 26 160 25 160 PF02681.14 DUF212 Family 2 128 128 160.9 1.5e-47 1 CL0525
Cotton_A_02724_CDS 2 88 1 88 PF17815.1 PDZ_3 Domain 52 145 145 79.4 2.4e-22 1 CL0466
Cotton_A_27186_CDS 45 196 45 198 PF03364.20 Polyketide_cyc Family 1 128 130 85.3 4e-24 1 CL0209
Cotton_A_00198_CDS 147 192 145 193 PF02234.19 CDI Family 5 48 49 44.8 1.1e-11 1 No_clan
Cotton_A_03103_CDS 3 333 1 333 PF16113.5 ECH_2 Domain 21 334 334 340.8 1e-101 1 CL0127
Cotton_A_12390_CDS 357 541 355 541 PF11721.8 Malectin Domain 3 165 165 129.1 1.7e-37 1 CL0202
Cotton_A_12390_CDS 618 884 616 886 PF00069.25 Pkinase Domain 3 259 264 155.5 1.7e-45 1 CL0016
Cotton_A_37212_CDS 1 111 1 113 PF03018.14 Dirigent Family 43 146 148 89.6 1.6e-25 1 CL0650
Cotton_A_04236_CDS 92 246 89 246 PF00005.27 ABC_tran Domain 4 137 137 78.8 5.3e-22 1 CL0023
Cotton_A_04236_CDS 285 361 285 374 PF12848.7 ABC_tran_Xtn Domain 1 73 85 81.8 2.8e-23 1 CL0023
Cotton_A_04236_CDS 401 532 401 532 PF00005.27 ABC_tran Domain 1 137 137 82.5 3.8e-23 1 CL0023
Cotton_A_04868_CDS 25 88 23 88 PF00808.23 CBFD_NFYB_HMF Domain 3 65 65 95.7 1.5e-27 1 CL0012
Cotton_A_26832_CDS 61 512 61 512 PF01474.16 DAHP_synth_2 Domain 1 437 437 624.7 6.5e-188 1 CL0036
Cotton_A_11910_CDS 1 112 1 112 PF05670.13 NFACT-R_1 Domain 1 109 109 148.6 9.1e-44 1 CL0684
Cotton_A_38432_CDS 250 615 249 615 PF03514.14 GRAS Family 2 374 374 359.9 1.4e-107 1 CL0063
Cotton_A_33714_CDS 7 109 5 109 PF03179.15 V-ATPase_G Family 3 105 105 120.5 4e-35 1 CL0255
Cotton_A_09389_CDS 20 183 17 192 PF03357.21 Snf7 Family 4 167 173 151.9 1.2e-44 1 CL0235
Cotton_A_24197_CDS 1 114 1 116 PF08284.11 RVP_2 Domain 21 134 136 99.6 1.1e-28 1 CL0129
Cotton_A_24197_CDS 122 272 113 273 PF00078.27 RVT_1 Family 15 221 222 93.4 1.4e-26 1 CL0027
Cotton_A_24197_CDS 336 390 336 393 PF17919.1 RT_RNaseH_2 Domain 1 60 100 53.2 2.3e-14 1 CL0219
Cotton_A_24197_CDS 500 551 498 551 PF17921.1 Integrase_H2C2 Domain 3 52 58 57.5 1.1e-15 1 CL0361
Cotton_A_09037_CDS 15 163 9 164 PF10604.9 Polyketide_cyc2 Family 7 142 143 82.6 3.3e-23 1 CL0209
Cotton_A_31332_CDS 31 96 27 98 PF13456.6 RVT_3 Domain 14 80 124 33.3 3.5e-08 1 CL0219
Cotton_A_18055_CDS 8 34 8 36 PF00036.32 EF-hand_1 Domain 1 27 29 26.1 3.7e-06 1 CL0220
Cotton_A_18055_CDS 102 166 101 167 PF13499.6 EF-hand_7 Domain 2 70 71 36.6 4.5e-09 1 CL0220
Cotton_A_12127_CDS 18 68 18 69 PF00847.20 AP2 Domain 1 53 54 51.5 8.5e-14 1 CL0081
Cotton_A_18922_CDS 85 107 85 107 PF00096.26 zf-C2H2 Domain 1 23 23 17.3 0.0049 1 CL0361
Cotton_A_33119_CDS 275 363 273 364 PF04576.15 Zein-binding Family 3 91 92 108.3 1.7e-31 1 No_clan
Cotton_A_35637_CDS 98 239 98 239 PF02365.15 NAM Family 1 126 126 79.7 3.5e-22 1 No_clan
Cotton_A_26839_CDS 39 139 36 140 PF13947.6 GUB_WAK_bind Domain 7 105 106 52.9 5.2e-14 1 No_clan
Cotton_A_00049_CDS 100 131 100 132 PF06200.14 tify Domain 1 33 34 43.5 1.4e-11 1 No_clan
Cotton_A_00049_CDS 166 182 166 182 PF09425.10 CCT_2 Motif 1 17 26 33.2 3.4e-08 1 CL0281
Cotton_A_15654_CDS 227 278 227 278 PF00010.26 HLH Domain 1 53 53 40.6 1.8e-10 1 No_clan
Cotton_A_32325_CDS 189 236 189 237 PF13041.6 PPR_2 Repeat 1 48 50 44.4 1.4e-11 1 CL0020
Cotton_A_32325_CDS 263 288 262 291 PF01535.20 PPR Family 2 27 31 24.7 1.7e-05 1 CL0020
Cotton_A_32325_CDS 291 337 291 340 PF13041.6 PPR_2 Repeat 1 47 50 38.9 7.4e-10 1 CL0020
Cotton_A_32325_CDS 365 389 364 392 PF01535.20 PPR Family 2 26 31 13.2 0.079 1 CL0020
Cotton_A_32325_CDS 435 460 431 460 PF01535.20 PPR Family 6 31 31 10.3 0.69 1 CL0020
Cotton_A_13216_CDS 123 252 123 253 PF00004.29 AAA Domain 1 131 132 123.6 6.9e-36 1 CL0023
Cotton_A_13216_CDS 277 310 275 322 PF17862.1 AAA_lid_3 Domain 3 36 45 29.6 4.3e-07 1 CL0671
Cotton_A_14227_CDS 205 227 205 227 PF00560.33 LRR_1 Repeat 1 23 23 11.0 0.53 1 CL0022
Cotton_A_14227_CDS 316 497 314 497 PF11721.8 Malectin Domain 3 165 165 143.4 6.5e-42 1 CL0202
Cotton_A_14227_CDS 551 617 540 637 PF07714.17 Pkinase_Tyr Domain 25 92 259 45.2 6.9e-12 1 CL0016
Cotton_A_08878_CDS 906 1051 905 1054 PF00179.26 UQ_con Domain 2 135 140 79.7 1.5e-22 1 CL0208
Cotton_A_18687_CDS 5 97 4 116 PF14226.6 DIOX_N Family 2 101 118 51.6 1.4e-13 1 CL0029
Cotton_A_18687_CDS 161 190 153 194 PF03171.20 2OG-FeII_Oxy Domain 9 38 101 21.4 0.00027 1 CL0029
Cotton_A_18687_CDS 191 224 190 224 PF03171.20 2OG-FeII_Oxy Domain 67 101 101 23.8 4.9e-05 1 CL0029
Cotton_A_11118_CDS 83 138 83 138 PF16450.5 Prot_ATP_ID_OB Domain 1 57 57 30.9 2e-07 1 CL0021
Cotton_A_11118_CDS 196 329 196 330 PF00004.29 AAA Domain 1 131 132 146.8 4.7e-43 1 CL0023
Cotton_A_11118_CDS 353 395 352 396 PF17862.1 AAA_lid_3 Domain 2 44 45 52.7 2.7e-14 1 CL0671
Cotton_A_39538_CDS 51 87 50 90 PF00646.33 F-box Domain 2 38 48 30.2 2.9e-07 1 CL0271
Cotton_A_39538_CDS 95 128 92 128 PF08238.12 Sel1 Repeat 4 38 38 8.2 4.2 1 CL0020
Cotton_A_39538_CDS 143 160 129 160 PF08238.12 Sel1 Repeat 21 38 38 13.1 0.12 1 CL0020
Cotton_A_39538_CDS 163 190 161 194 PF08238.12 Sel1 Repeat 3 34 38 12.6 0.18 1 CL0020
Cotton_A_39538_CDS 196 230 195 230 PF08238.12 Sel1 Repeat 2 38 38 28.5 1.8e-06 1 CL0020
Cotton_A_39538_CDS 232 266 231 266 PF08238.12 Sel1 Repeat 2 38 38 29.1 1.1e-06 1 CL0020
Cotton_A_28509_CDS 33 172 31 173 PF03208.19 PRA1 Family 3 142 143 164.9 8.4e-49 1 No_clan
Cotton_A_11334_CDS 14 194 10 207 PF01852.19 START Domain 12 194 209 46.9 2.1e-12 1 CL0209
Cotton_A_15067_CDS 61 250 55 250 PF01734.22 Patatin Family 11 204 204 52.6 6.5e-14 1 CL0323
Cotton_A_25578_CDS 28 87 27 91 PF08240.12 ADH_N Domain 2 61 109 34.2 1.8e-08 1 CL0296
Cotton_A_25578_CDS 151 266 151 280 PF00107.26 ADH_zinc_N Family 1 116 130 102.2 2e-29 1 CL0063
Cotton_A_08145_CDS 119 268 95 285 PF17874.1 TPR_MalT Domain 44 187 336 36.9 2.5e-09 1 CL0020
Cotton_A_08145_CDS 281 354 280 356 PF13424.6 TPR_12 Repeat 2 75 77 43.4 3e-11 1 CL0020
Cotton_A_08145_CDS 452 524 448 524 PF13424.6 TPR_12 Repeat 5 77 77 41.0 1.7e-10 1 CL0020
Cotton_A_32180_CDS 59 439 50 443 PF00999.21 Na_H_Exchanger Family 8 376 381 180.5 4.2e-53 1 CL0064
Cotton_A_36284_CDS 26 149 24 156 PF00931.22 NB-ARC Domain 3 125 252 94.4 6.1e-27 1 CL0023
Cotton_A_14052_CDS 419 482 419 482 PF08590.10 DUF1771 Domain 1 64 64 61.2 9e-17 1 No_clan
Cotton_A_14052_CDS 496 564 496 572 PF01713.21 Smr Family 1 60 80 26.5 6.2e-06 1 No_clan
Cotton_A_02250_CDS 73 197 21 198 PF05757.11 PsbQ Family 72 199 200 116.0 1.8e-33 1 No_clan
Cotton_A_15768_CDS 199 575 198 575 PF00368.18 HMG-CoA_red Family 2 367 367 488.8 9.8e-147 1 No_clan
Cotton_A_22322_CDS 33 124 31 126 PF00153.27 Mito_carr Family 3 95 97 72.2 2.6e-20 1 No_clan
Cotton_A_22322_CDS 130 215 126 217 PF00153.27 Mito_carr Family 5 95 97 63.9 9.5e-18 1 No_clan
Cotton_A_22322_CDS 225 317 222 319 PF00153.27 Mito_carr Family 4 95 97 74.8 3.7e-21 1 No_clan
Cotton_A_00321_CDS 91 595 91 595 PF03141.16 Methyltransf_29 Family 1 506 506 696.2 2.3e-209 1 CL0063
Cotton_A_38802_CDS 1 178 1 179 PF12767.7 SAGA-Tad1 Family 64 234 235 65.7 5.1e-18 1 No_clan
Cotton_A_23952_CDS 8 50 2 65 PF05340.12 DUF740 Family 10 52 609 28.1 8.8e-07 1 No_clan
Cotton_A_37722_CDS 215 286 185 289 PF00954.20 S_locus_glycop Domain 38 107 111 30.0 5.9e-07 1 No_clan
Cotton_A_37722_CDS 478 672 475 710 PF00069.25 Pkinase Domain 5 198 264 151.6 2.5e-44 1 CL0016
Cotton_A_08135_CDS 64 431 56 437 PF01053.20 Cys_Met_Meta_PP Domain 14 367 382 280.3 1.6e-83 1 CL0061
Cotton_A_19725_CDS 98 374 97 375 PF00483.23 NTP_transferase Family 2 247 248 254.6 1e-75 1 CL0110
Cotton_A_14415_CDS 246 686 246 686 PF12899.7 Glyco_hydro_100 Domain 1 435 435 681.8 3.3e-205 1 CL0059
Cotton_A_18821_CDS 36 119 36 119 PF01221.18 Dynein_light Domain 1 86 86 132.3 5.8e-39 1 No_clan
Cotton_A_29904_CDS 58 359 57 359 PF02309.16 AUX_IAA Family 2 237 237 287.3 1.1e-85 1 CL0072
Cotton_A_37827_CDS 4 92 2 94 PF00153.27 Mito_carr Family 6 95 97 63.3 1.5e-17 1 No_clan
Cotton_A_37827_CDS 108 201 99 204 PF00153.27 Mito_carr Family 12 93 97 44.7 9.7e-12 1 No_clan
Cotton_A_30911_CDS 84 107 82 109 PF01535.20 PPR Family 6 29 31 12.4 0.14 1 CL0020
Cotton_A_30911_CDS 108 154 107 155 PF13041.6 PPR_2 Repeat 2 48 50 39.1 6.4e-10 1 CL0020
Cotton_A_30911_CDS 209 252 208 254 PF13041.6 PPR_2 Repeat 2 45 50 32.7 6.2e-08 1 CL0020
Cotton_A_30911_CDS 285 310 284 311 PF01535.20 PPR Family 5 30 31 14.5 0.032 1 CL0020
Cotton_A_30911_CDS 412 458 411 460 PF13041.6 PPR_2 Repeat 2 48 50 37.8 1.6e-09 1 CL0020
Cotton_A_30911_CDS 488 510 486 512 PF01535.20 PPR Family 4 26 31 10.2 0.76 1 CL0020
Cotton_A_17095_CDS 9 343 8 343 PF00724.20 Oxidored_FMN Domain 2 342 342 290.6 1.7e-86 1 CL0036
Cotton_A_09388_CDS 93 407 93 409 PF01546.28 Peptidase_M20 Family 1 205 207 114.4 5.6e-33 1 CL0035
Cotton_A_09388_CDS 207 294 202 297 PF07687.14 M20_dimer Domain 10 99 109 42.1 6.4e-11 1 No_clan
Cotton_A_27762_CDS 37 164 36 165 PF12353.8 eIF3g Family 2 124 125 121.9 2e-35 1 CL0511
Cotton_A_27762_CDS 217 283 217 287 PF00076.22 RRM_1 Domain 1 66 70 74.8 3.4e-21 1 CL0221
Cotton_A_30270_CDS 11 51 10 51 PF08263.12 LRRNT_2 Family 2 41 41 24.0 3.5e-05 1 No_clan
Cotton_A_30270_CDS 290 328 288 328 PF08263.12 LRRNT_2 Family 3 41 41 21.6 0.00019 1 No_clan
Cotton_A_30270_CDS 588 859 586 862 PF00069.25 Pkinase Domain 3 259 264 160.2 5.9e-47 1 CL0016
Cotton_A_24064_CDS 89 428 86 445 PF00162.19 PGK Domain 6 345 378 200.5 3.8e-59 1 No_clan
Cotton_A_24064_CDS 487 637 486 680 PF02390.17 Methyltransf_4 Family 2 137 173 66.0 2.8e-18 1 CL0063
Cotton_A_00857_CDS 104 458 103 466 PF00155.21 Aminotran_1_2 Domain 2 353 363 239.7 5.2e-71 1 CL0061
Cotton_A_04415_CDS 4 731 4 731 PF06075.12 DUF936 Family 1 692 692 772.2 6.9e-232 1 No_clan
Cotton_A_32610_CDS 202 268 202 269 PF00076.22 RRM_1 Domain 1 69 70 23.2 4.5e-05 1 CL0221
Cotton_A_32610_CDS 836 900 836 905 PF01480.17 PWI Family 1 67 72 53.0 3.2e-14 1 No_clan
Cotton_A_06368_CDS 227 432 100 442 PF00201.18 UDPGT Family 227 409 499 72.0 4.2e-20 1 CL0113
Cotton_A_20749_CDS 72 327 70 329 PF00246.24 Peptidase_M14 Domain 3 287 289 201.9 1.8e-59 1 CL0035
Cotton_A_31465_CDS 142 459 142 459 PF00225.23 Kinesin Domain 1 333 333 364.7 3.7e-109 1 CL0023
Cotton_A_18660_CDS 66 231 66 231 PF07816.11 DUF1645 Family 1 191 191 94.2 1.4e-26 1 No_clan
Cotton_A_21578_CDS 3 135 3 135 PF04979.14 IPP-2 Family 1 133 133 84.3 1.2e-23 1 No_clan
Cotton_A_11594_CDS 77 232 77 233 PF00406.22 ADK Domain 1 150 151 92.4 3e-26 1 CL0023
Cotton_A_22025_CDS 38 127 38 127 PF00447.17 HSF_DNA-bind Domain 1 96 96 98.1 3.3e-28 1 CL0123
Cotton_A_10380_CDS 2 237 1 239 PF11955.8 PORR Family 81 324 326 275.4 5.1e-82 1 No_clan
Cotton_A_25720_CDS 15 200 4 206 PF15251.6 DUF4588 Family 53 225 252 29.3 6.8e-07 1 No_clan
Cotton_A_34371_CDS 7 93 2 93 PF13456.6 RVT_3 Domain 37 124 124 49.5 3.4e-13 1 CL0219
Cotton_A_27373_CDS 47 233 47 234 PF00485.18 PRK Domain 1 196 197 170.8 2.8e-50 1 CL0023
Cotton_A_27373_CDS 263 484 260 484 PF14681.6 UPRTase Domain 3 207 207 200.0 2.8e-59 1 CL0533
Cotton_A_05462_CDS 3 207 1 214 PF00931.22 NB-ARC Domain 40 251 252 129.6 1.1e-37 1 CL0023
Cotton_A_05462_CDS 977 1061 975 1098 PF18052.1 Rx_N Domain 5 84 93 77.9 5.3e-22 1 No_clan
Cotton_A_05462_CDS 1148 1380 1136 1381 PF00931.22 NB-ARC Domain 13 251 252 161.9 1.5e-47 1 CL0023
Cotton_A_21832_CDS 122 149 120 149 PF01535.20 PPR Family 4 31 31 9.9 0.91 1 CL0020
Cotton_A_21832_CDS 182 208 182 209 PF01535.20 PPR Family 1 27 31 17.3 0.004 1 CL0020
Cotton_A_21832_CDS 217 240 213 243 PF01535.20 PPR Family 5 28 31 11.4 0.31 1 CL0020
Cotton_A_21832_CDS 348 374 347 376 PF01535.20 PPR Family 2 28 31 20.8 0.0003 1 CL0020
Cotton_A_04522_CDS 28 141 27 143 PF07732.15 Cu-oxidase_3 Domain 2 117 119 128.5 1.3e-37 1 CL0026
Cotton_A_04522_CDS 155 303 153 304 PF00394.22 Cu-oxidase Domain 3 158 159 107.6 6.5e-31 1 CL0026
Cotton_A_04522_CDS 408 515 407 519 PF07731.14 Cu-oxidase_2 Domain 2 110 137 70.8 8.9e-20 1 CL0026
Cotton_A_31832_CDS 65 338 64 339 PF00009.27 GTP_EFTU Domain 2 193 194 205.9 4.3e-61 1 CL0023
Cotton_A_31832_CDS 380 446 380 446 PF03144.25 GTP_EFTU_D2 Domain 1 74 74 54.4 1.2e-14 1 CL0575
Cotton_A_31832_CDS 459 533 459 533 PF14492.6 EFG_II Domain 1 75 75 107.4 2.9e-31 1 CL0437
Cotton_A_31832_CDS 534 654 534 655 PF03764.18 EFG_IV Domain 1 120 121 130.3 3e-38 1 CL0329
Cotton_A_31832_CDS 657 743 657 744 PF00679.24 EFG_C Domain 1 88 89 92.4 1.3e-26 1 CL0437
Cotton_A_34504_CDS 6 213 5 214 PF16213.5 DCB Family 2 177 178 152.3 1e-44 1 No_clan
Cotton_A_34504_CDS 339 399 338 402 PF12783.7 Sec7_N Domain 2 61 158 34.7 1.5e-08 1 No_clan
Cotton_A_34504_CDS 397 440 393 440 PF12783.7 Sec7_N Domain 117 158 158 33.8 2.9e-08 1 No_clan
Cotton_A_34504_CDS 554 735 553 735 PF01369.20 Sec7 Domain 2 183 183 250.6 7.4e-75 1 No_clan
Cotton_A_34504_CDS 1104 1186 1104 1187 PF09324.10 DUF1981 Family 1 83 84 104.1 2.6e-30 1 No_clan
Cotton_A_34504_CDS 1283 1384 1195 1418 PF16206.5 Mon2_C Family 78 181 785 38.9 3.1e-10 1 No_clan
Cotton_A_11772_CDS 3 68 1 68 PF11820.8 DUF3339 Family 2 67 67 110.1 4.4e-32 1 No_clan
Cotton_A_29132_CDS 11 52 10 55 PF00319.18 SRF-TF Domain 2 43 48 55.8 2.4e-15 1 No_clan
Cotton_A_20741_CDS 36 140 34 142 PF07732.15 Cu-oxidase_3 Domain 3 117 119 92.6 1.7e-26 1 CL0026
Cotton_A_20741_CDS 154 289 152 292 PF00394.22 Cu-oxidase Domain 3 156 159 74.6 9.6e-21 1 CL0026
Cotton_A_13425_CDS 330 382 328 385 PF00170.21 bZIP_1 Family 5 57 64 45.9 4.3e-12 1 CL0018
Cotton_A_03402_CDS 10 55 2 58 PF03061.22 4HBT Domain 31 76 79 30.6 3.2e-07 1 CL0050
Cotton_A_34749_CDS 29 136 28 136 PF04398.12 DUF538 Family 2 112 112 101.0 4.8e-29 1 No_clan
Cotton_A_24485_CDS 271 380 268 380 PF18149.1 Helicase_PWI Domain 4 111 111 120.6 3.4e-35 1 No_clan
Cotton_A_24485_CDS 511 674 510 686 PF00270.29 DEAD Domain 2 160 176 80.9 8.9e-23 1 CL0023
Cotton_A_07856_CDS 103 127 72 128 PF03765.15 CRAL_TRIO_N Domain 30 53 54 23.6 4.3e-05 1 CL0214
Cotton_A_07856_CDS 152 318 151 318 PF00650.20 CRAL_TRIO Domain 2 159 159 105.7 1.9e-30 1 CL0512
Cotton_A_07856_CDS 666 840 663 840 PF00186.19 DHFR_1 Domain 4 161 161 135.2 1.6e-39 1 CL0387
Cotton_A_15849_CDS 277 331 277 332 PF03478.18 DUF295 Domain 1 54 55 56.7 1.3e-15 1 No_clan
Cotton_A_31084_CDS 24 151 24 151 PF17767.1 NAPRTase_N Domain 1 125 125 131.9 1.6e-38 1 CL0105
Cotton_A_31084_CDS 325 424 315 443 PF04095.16 NAPRTase Family 114 221 241 21.7 0.00013 1 CL0036
Cotton_A_31084_CDS 430 541 430 542 PF17956.1 NAPRTase_C Domain 1 110 111 124.6 2.2e-36 1 No_clan
Cotton_A_02214_CDS 38 175 9 211 PF00704.28 Glyco_hydro_18 Domain 51 184 312 52.2 7.1e-14 1 CL0058
Cotton_A_21223_CDS 129 166 127 166 PF00400.32 WD40 Repeat 3 38 38 16.7 0.01 1 CL0186
Cotton_A_21223_CDS 574 767 574 773 PF12931.7 Sec16_C Domain 1 232 302 30.3 3.3e-07 1 No_clan
Cotton_A_14739_CDS 147 193 144 193 PF00010.26 HLH Domain 4 53 53 54.3 9.8e-15 1 No_clan
Cotton_A_30291_CDS 22 61 21 61 PF02533.15 PsbK Family 2 41 41 72.0 3.2e-20 1 No_clan
Cotton_A_26439_CDS 13 119 13 122 PF00072.24 Response_reg Domain 1 107 112 80.3 1.1e-22 1 CL0304
Cotton_A_26439_CDS 184 237 184 237 PF00249.31 Myb_DNA-binding Domain 1 46 46 33.0 4.9e-08 1 CL0123
Cotton_A_04357_CDS 11 46 10 46 PF10197.9 Cir_N Domain 2 37 37 54.8 7.9e-15 1 No_clan
Cotton_A_04357_CDS 64 161 64 161 PF12542.8 CWC25 Family 1 102 102 48.3 1.5e-12 1 No_clan
Cotton_A_07143_CDS 185 514 184 518 PF05192.18 MutS_III Domain 2 188 191 66.6 3.3e-18 1 No_clan
Cotton_A_07143_CDS 385 474 385 477 PF05190.18 MutS_IV Domain 1 89 92 53.5 2.3e-14 1 No_clan
Cotton_A_07143_CDS 572 757 571 758 PF00488.21 MutS_V Domain 2 187 188 227.2 1.5e-67 1 CL0023
Cotton_A_09371_CDS 5 250 4 251 PF00335.20 Tetraspanin Family 2 228 229 104.9 5.1e-30 1 CL0347
Cotton_A_33951_CDS 76 160 43 162 PF03556.15 Cullin_binding Family 15 108 120 66.3 3.2e-18 1 CL0220
Cotton_A_30606_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 51.9 6.3e-14 1 CL0123
Cotton_A_30606_CDS 67 112 67 112 PF00249.31 Myb_DNA-binding Domain 1 46 46 51.6 8e-14 1 CL0123
Cotton_A_17585_CDS 13 175 12 176 PF06364.12 DUF1068 Family 2 167 168 190.3 2.3e-56 1 No_clan
Cotton_A_29795_CDS 4 334 1 344 PF05701.11 WEMBL Family 4 324 562 49.9 2e-13 1 No_clan
Cotton_A_13054_CDS 12 107 11 107 PF11460.8 DUF3007 Family 2 96 96 112.5 8.5e-33 1 No_clan
Cotton_A_12161_CDS 215 295 213 296 PF00439.25 Bromodomain Domain 3 83 84 86.2 1.2e-24 1 No_clan
Cotton_A_36606_CDS 3 425 2 428 PF02458.15 Transferase Family 2 431 434 260.1 3.1e-77 1 CL0149
Cotton_A_16917_CDS 86 354 85 354 PF07714.17 Pkinase_Tyr Domain 3 259 259 162.8 9.2e-48 1 CL0016
Cotton_A_10271_CDS 229 280 229 280 PF00249.31 Myb_DNA-binding Domain 1 46 46 36.5 4.2e-09 1 CL0123
Cotton_A_10271_CDS 318 365 318 365 PF14379.6 Myb_CC_LHEQLE Family 1 48 48 78.5 2.3e-22 1 No_clan
Cotton_A_04794_CDS 16 79 15 112 PF05071.16 NDUFA12 Family 2 63 96 44.9 1.6e-11 1 No_clan
Cotton_A_09805_CDS 8 58 8 59 PF13041.6 PPR_2 Repeat 1 49 50 47.5 1.5e-12 1 CL0020
Cotton_A_09805_CDS 78 106 76 108 PF12854.7 PPR_1 Repeat 3 31 34 25.9 5.6e-06 1 CL0020
Cotton_A_09805_CDS 118 146 117 146 PF01535.20 PPR Family 2 30 31 15.7 0.013 1 CL0020
Cotton_A_09805_CDS 153 180 152 182 PF01535.20 PPR Family 2 29 31 10.7 0.5 1 CL0020
Cotton_A_28886_CDS 148 336 148 336 PF00270.29 DEAD Domain 1 176 176 166.1 6.4e-49 1 CL0023
Cotton_A_28886_CDS 371 487 370 487 PF00271.31 Helicase_C Family 2 111 111 105.0 2.6e-30 1 CL0023
Cotton_A_35951_CDS 150 183 150 185 PF00320.27 GATA Domain 1 34 36 60.6 7.8e-17 1 CL0167
Cotton_A_35676_CDS 21 70 21 83 PF05758.12 Ycf1 Family 1 50 945 59.6 1.5e-16 1 No_clan
Cotton_A_36317_CDS 23 97 17 97 PF03951.19 Gln-synt_N Domain 7 83 83 36.6 2.8e-09 1 No_clan
Cotton_A_36317_CDS 126 254 109 273 PF00120.24 Gln-synt_C Domain 24 156 345 42.7 3.4e-11 1 CL0286
Cotton_A_38461_CDS 181 196 178 198 PF00612.27 IQ Motif 4 19 21 14.1 0.03 1 CL0220
Cotton_A_38461_CDS 204 218 201 220 PF00612.27 IQ Motif 5 19 21 16.5 0.005 1 CL0220
Cotton_A_23608_CDS 123 242 118 243 PF15413.6 PH_11 Domain 4 104 105 68.4 5.9e-19 1 CL0266
Cotton_A_23608_CDS 451 803 451 803 PF01237.18 Oxysterol_BP Family 1 373 373 414.5 3.2e-124 1 No_clan
Cotton_A_03801_CDS 42 142 2 143 PF00134.23 Cyclin_N Domain 32 126 127 81.8 3.4e-23 1 CL0065
Cotton_A_33358_CDS 28 77 28 78 PF08100.11 Dimerisation Domain 1 50 51 48.4 6.9e-13 1 CL0123
Cotton_A_21593_CDS 56 108 56 108 PF00010.26 HLH Domain 1 53 53 37.9 1.3e-09 1 No_clan
Cotton_A_04441_CDS 45 122 38 124 PF02298.17 Cu_bind_like Domain 6 82 84 71.5 4.2e-20 1 CL0026
Cotton_A_21439_CDS 4 317 4 317 PF12819.7 Malectin_like Domain 1 336 336 246.3 4.7e-73 1 CL0202
Cotton_A_36210_CDS 26 76 26 77 PF00847.20 AP2 Domain 1 53 54 44.1 1.7e-11 1 CL0081
Cotton_A_32909_CDS 55 106 55 130 PF01301.19 Glyco_hydro_35 Domain 1 52 316 72.3 5.2e-20 1 CL0058
Cotton_A_32909_CDS 106 169 102 169 PF17834.1 GHD Domain 10 72 72 73.6 1e-20 1 CL0369
Cotton_A_32909_CDS 491 570 491 570 PF02140.18 Gal_Lectin Domain 1 80 80 56.0 4.1e-15 1 No_clan
Cotton_A_25106_CDS 5 87 5 102 PF18052.1 Rx_N Domain 1 83 93 71.0 7.8e-20 1 No_clan
Cotton_A_25106_CDS 168 413 164 419 PF00931.22 NB-ARC Domain 5 244 252 216.2 4.1e-64 1 CL0023
Cotton_A_07210_CDS 78 444 76 444 PF00155.21 Aminotran_1_2 Domain 3 363 363 322.7 3.2e-96 1 CL0061
Cotton_A_25695_CDS 7 575 7 578 PF05691.12 Raffinose_syn Family 1 593 750 947.5 3.8e-285 1 CL0058
Cotton_A_25695_CDS 579 725 575 726 PF05691.12 Raffinose_syn Family 628 749 750 131.9 1.8e-38 1 CL0058
Cotton_A_17374_CDS 252 507 251 507 PF04646.12 DUF604 Family 2 256 256 337.2 5.7e-101 1 CL0110
Cotton_A_20578_CDS 22 134 21 134 PF04398.12 DUF538 Family 2 112 112 112.5 1.3e-32 1 No_clan
Cotton_A_23983_CDS 30 291 29 292 PF10609.9 ParA Family 2 245 246 321.1 4.5e-96 1 CL0023
Cotton_A_13988_CDS 7 293 7 296 PF01212.21 Beta_elim_lyase Domain 1 290 293 319.5 1.9e-95 1 CL0061
Cotton_A_07724_CDS 30 172 29 172 PF04043.15 PMEI Domain 2 154 154 98.6 4.3e-28 1 No_clan
Cotton_A_07724_CDS 208 505 208 505 PF01095.19 Pectinesterase Family 1 298 298 485.4 4.2e-146 1 CL0268
Cotton_A_11421_CDS 186 462 185 465 PF00069.25 Pkinase Domain 2 258 264 155.5 1.6e-45 1 CL0016
Cotton_A_11562_CDS 90 381 89 382 PF05212.12 DUF707 Family 2 295 296 412.2 1.2e-123 1 No_clan
Cotton_A_24719_CDS 150 264 117 264 PF02544.16 Steroid_dh Family 34 150 150 95.2 3.7e-27 1 CL0115
Cotton_A_03704_CDS 30 94 29 94 PF00808.23 CBFD_NFYB_HMF Domain 2 65 65 96.5 8e-28 1 CL0012
Cotton_A_02954_CDS 180 327 172 398 PF06027.12 SLC35F Family 94 232 299 42.5 5.7e-11 1 CL0184
Cotton_A_24084_CDS 77 135 73 148 PF00789.20 UBX Domain 5 64 81 29.0 9.3e-07 1 CL0072
Cotton_A_27087_CDS 10 71 10 73 PF00076.22 RRM_1 Domain 3 67 70 31.0 1.6e-07 1 CL0221
Cotton_A_14289_CDS 5 83 4 84 PF00887.19 ACBP Domain 2 84 85 104.6 2.4e-30 1 CL0632
Cotton_A_24309_CDS 39 96 38 96 PF09597.10 IGR Domain 2 55 55 64.3 8e-18 1 CL0003
Cotton_A_24635_CDS 1 166 1 166 PF00926.19 DHBP_synthase Family 29 192 192 229.3 2.7e-68 1 No_clan
Cotton_A_35241_CDS 13 74 12 92 PF08911.11 NUP50 Domain 2 68 71 56.7 2.8e-15 1 No_clan
Cotton_A_35241_CDS 311 422 310 428 PF00638.18 Ran_BP1 Family 2 115 122 63.9 1.6e-17 1 CL0266
Cotton_A_10386_CDS 1 370 1 370 PF00297.22 Ribosomal_L3 Family 1 369 369 644.3 5.1e-194 1 CL0575
Cotton_A_14185_CDS 15 435 5 437 PF00501.28 AMP-binding Family 11 421 423 238.8 8.1e-71 1 CL0378
Cotton_A_14185_CDS 445 511 445 514 PF13193.6 AMP-binding_C Domain 1 58 76 51.7 1.3e-13 1 CL0531
Cotton_A_35974_CDS 1 139 1 145 PF00067.22 p450 Domain 321 456 463 132.5 1.8e-38 1 No_clan
Cotton_A_33278_CDS 1 78 1 81 PF01397.21 Terpene_synth Domain 110 191 192 66.2 3.1e-18 1 No_clan
Cotton_A_04950_CDS 1 301 1 301 PF14476.6 Chloroplast_duf Family 15 320 320 495.1 6.8e-149 1 No_clan
Cotton_A_37123_CDS 956 1217 955 1250 PF04502.13 DUF572 Family 2 258 332 224.6 2.4e-66 1 No_clan
Cotton_A_06635_CDS 172 276 171 277 PF03763.13 Remorin_C Family 2 106 107 99.2 1.1e-28 1 No_clan
Cotton_A_01061_CDS 9 244 9 251 PF01370.21 Epimerase Family 1 229 241 69.1 3.7e-19 1 CL0063
Cotton_A_10294_CDS 13 500 13 500 PF01593.24 Amino_oxidase Domain 1 452 452 270.6 3.3e-80 1 CL0063
Cotton_A_26419_CDS 123 151 121 151 PF01535.20 PPR Family 3 31 31 19.3 0.00091 1 CL0020
Cotton_A_26419_CDS 189 238 189 238 PF13041.6 PPR_2 Repeat 1 50 50 54.5 1e-14 1 CL0020
Cotton_A_26419_CDS 255 288 255 288 PF12854.7 PPR_1 Repeat 1 34 34 37.3 1.6e-09 1 CL0020
Cotton_A_26419_CDS 294 343 294 343 PF13041.6 PPR_2 Repeat 1 50 50 51.3 9.8e-14 1 CL0020
Cotton_A_26419_CDS 371 394 368 396 PF01535.20 PPR Family 5 28 31 17.9 0.0027 1 CL0020
Cotton_A_31993_CDS 58 409 58 409 PF02137.18 A_deamin Family 1 329 329 294.0 1.7e-87 1 CL0109
Cotton_A_03337_CDS 181 247 181 248 PF00013.29 KH_1 Domain 1 65 66 51.3 7.4e-14 1 CL0007
Cotton_A_03337_CDS 278 344 277 345 PF00013.29 KH_1 Domain 2 65 66 64.6 5.2e-18 1 CL0007
Cotton_A_18561_CDS 24 54 23 55 PF12854.7 PPR_1 Repeat 3 33 34 29.7 3.8e-07 1 CL0020
Cotton_A_18561_CDS 61 110 61 110 PF13041.6 PPR_2 Repeat 1 50 50 66.2 2.1e-18 1 CL0020
Cotton_A_18561_CDS 127 160 127 160 PF12854.7 PPR_1 Repeat 1 34 34 44.3 1e-11 1 CL0020
Cotton_A_18561_CDS 167 215 166 215 PF13041.6 PPR_2 Repeat 2 50 50 70.1 1.3e-19 1 CL0020
Cotton_A_18561_CDS 239 269 239 269 PF01535.20 PPR Family 1 31 31 19.9 0.0006 1 CL0020
Cotton_A_18561_CDS 271 319 271 320 PF13041.6 PPR_2 Repeat 1 49 50 57.1 1.6e-15 1 CL0020
Cotton_A_18561_CDS 341 385 341 386 PF13041.6 PPR_2 Repeat 1 45 50 48.6 6.9e-13 1 CL0020
Cotton_A_01003_CDS 121 221 119 222 PF03754.13 DUF313 Family 3 112 113 46.5 3.5e-12 1 CL0405
Cotton_A_29765_CDS 6 48 1 48 PF01477.23 PLAT Domain 74 117 117 34.7 2.1e-08 1 CL0321
Cotton_A_23669_CDS 1 85 1 87 PF11543.8 UN_NPL4 Family 5 78 80 22.9 8.9e-05 1 CL0072
Cotton_A_23669_CDS 168 282 155 302 PF05021.15 NPL4 Family 20 151 308 44.8 1e-11 1 CL0366
Cotton_A_23669_CDS 332 392 311 409 PF05021.15 NPL4 Family 220 284 308 23.8 2.4e-05 1 CL0366
Cotton_A_00389_CDS 5 89 5 90 PF01221.18 Dynein_light Domain 1 85 86 107.2 4e-31 1 No_clan
Cotton_A_21469_CDS 7 129 7 130 PF00241.20 Cofilin_ADF Domain 1 120 121 135.2 9e-40 1 CL0092
Cotton_A_23565_CDS 238 304 235 306 PF04564.15 U-box Domain 4 70 73 64.3 8.3e-18 1 CL0229
Cotton_A_23565_CDS 314 353 314 354 PF00514.23 Arm Repeat 1 40 41 35.9 5.1e-09 1 CL0020
Cotton_A_23565_CDS 357 394 356 395 PF00514.23 Arm Repeat 3 40 41 23.8 3.1e-05 1 CL0020
Cotton_A_23565_CDS 398 435 397 436 PF00514.23 Arm Repeat 3 40 41 27.7 1.9e-06 1 CL0020
Cotton_A_14612_CDS 61 100 60 100 PF00400.32 WD40 Repeat 2 38 38 20.3 0.00072 1 CL0186
Cotton_A_14612_CDS 156 187 148 187 PF00400.32 WD40 Repeat 9 38 38 12.5 0.22 1 CL0186
Cotton_A_13754_CDS 24 196 23 200 PF02441.19 Flavoprotein Family 2 154 158 154.0 2.7e-45 1 No_clan
Cotton_A_26511_CDS 53 216 24 217 PF07847.12 PCO_ADO Family 25 200 201 183.1 4e-54 1 CL0029
Cotton_A_01251_CDS 30 119 25 120 PF01248.26 Ribosomal_L7Ae Domain 6 94 95 97.9 2e-28 1 CL0101
Cotton_A_27907_CDS 125 313 121 314 PF01545.21 Cation_efflux Family 5 198 199 121.3 4.1e-35 1 No_clan
Cotton_A_27907_CDS 319 394 318 395 PF16916.5 ZT_dimer Domain 2 77 79 53.6 1.9e-14 1 No_clan
Cotton_A_24558_CDS 172 397 161 398 PF00931.22 NB-ARC Domain 15 251 252 148.4 2.1e-43 1 CL0023
Cotton_A_19640_CDS 7 115 7 116 PF01900.19 RNase_P_Rpp14 Family 1 102 103 91.8 2.6e-26 1 No_clan
Cotton_A_04542_CDS 160 216 160 216 PF11961.8 DUF3475 Family 1 57 57 87.9 3.2e-25 1 No_clan
Cotton_A_04542_CDS 399 483 398 483 PF05003.12 DUF668 Family 2 89 89 115.9 8.6e-34 1 No_clan
Cotton_A_06521_CDS 1 21 1 23 PF01214.18 CK_II_beta Domain 69 89 182 21.6 0.00016 1 No_clan
Cotton_A_04198_CDS 212 314 209 316 PF00651.31 BTB Domain 5 107 111 21.3 0.00025 1 CL0033
Cotton_A_04198_CDS 749 778 748 779 PF13181.6 TPR_8 Repeat 2 31 34 19.9 0.00057 1 CL0020
Cotton_A_28693_CDS 104 281 104 281 PF07816.11 DUF1645 Family 1 191 191 131.0 7.9e-38 1 No_clan
Cotton_A_30262_CDS 7 107 4 109 PF03168.13 LEA_2 Domain 4 101 101 31.4 2.2e-07 1 CL0159
Cotton_A_08802_CDS 1 86 1 90 PF12776.7 Myb_DNA-bind_3 Domain 6 92 96 67.2 1.9e-18 1 CL0123
Cotton_A_01801_CDS 27 78 27 78 PF08100.11 Dimerisation Domain 1 51 51 56.3 2.3e-15 1 CL0123
Cotton_A_01801_CDS 133 338 133 338 PF00891.18 Methyltransf_2 Domain 1 210 210 250.6 8.8e-75 1 CL0063
Cotton_A_03929_CDS 50 211 47 215 PF02263.19 GBP Domain 96 256 260 132.5 1.6e-38 1 CL0023
Cotton_A_03929_CDS 216 519 216 536 PF02841.14 GBP_C Domain 1 280 297 142.3 2.1e-41 1 CL0023
Cotton_A_34433_CDS 350 501 350 501 PF00160.21 Pro_isomerase Domain 1 158 158 166.4 5.9e-49 1 CL0475
Cotton_A_26274_CDS 19 271 9 274 PF00795.22 CN_hydrolase Family 12 258 261 186.5 5.4e-55 1 No_clan
Cotton_A_25291_CDS 106 343 106 363 PF01370.21 Epimerase Family 1 231 241 161.4 2.4e-47 1 CL0063
Cotton_A_04332_CDS 97 209 86 227 PF00860.20 Xan_ur_permease Family 34 146 389 50.2 1.6e-13 1 CL0062
Cotton_A_04332_CDS 265 500 232 503 PF00860.20 Xan_ur_permease Family 158 386 389 50.1 1.6e-13 1 CL0062
Cotton_A_27736_CDS 41 174 40 177 PF05903.14 Peptidase_C97 Domain 2 148 151 160.3 3e-47 1 CL0125
Cotton_A_00227_CDS 231 263 227 264 PF00400.32 WD40 Repeat 6 37 38 34.8 2e-08 1 CL0186
Cotton_A_00227_CDS 462 498 460 498 PF00400.32 WD40 Repeat 3 38 38 13.7 0.089 1 CL0186
Cotton_A_33188_CDS 113 354 100 357 PF00933.21 Glyco_hydro_3 Domain 84 316 319 130.2 1.1e-37 1 CL0058
Cotton_A_33188_CDS 398 628 398 628 PF01915.22 Glyco_hydro_3_C Domain 1 204 204 184.2 2.7e-54 1 No_clan
Cotton_A_33188_CDS 697 757 690 759 PF14310.6 Fn3-like Family 9 69 71 29.4 6.5e-07 1 CL0159
Cotton_A_02349_CDS 72 86 71 88 PF07145.15 PAM2 Motif 2 16 18 23.0 4e-05 1 No_clan
Cotton_A_02349_CDS 153 215 153 220 PF00076.22 RRM_1 Domain 1 65 70 44.6 9.5e-12 1 CL0221
Cotton_A_02349_CDS 250 322 250 323 PF00076.22 RRM_1 Domain 1 69 70 25.4 9.5e-06 1 CL0221
Cotton_A_32149_CDS 6 99 1 100 PF13839.6 PC-Esterase Family 181 282 283 103.4 1.8e-29 1 CL0264
Cotton_A_07475_CDS 6 62 5 62 PF00403.26 HMA Domain 2 62 62 46.0 5.3e-12 1 No_clan
Cotton_A_17813_CDS 32 111 32 112 PF13774.6 Longin Domain 1 83 84 72.3 2.5e-20 1 No_clan
Cotton_A_17813_CDS 129 215 127 215 PF00957.21 Synaptobrevin Family 3 89 89 101.7 1.4e-29 1 CL0445
Cotton_A_05712_CDS 17 204 16 204 PF13869.6 NUDIX_2 Domain 2 188 188 245.3 3.3e-73 1 CL0261
Cotton_A_00780_CDS 9 172 8 173 PF00160.21 Pro_isomerase Domain 2 157 158 173.4 4e-51 1 CL0475
Cotton_A_00780_CDS 299 332 299 332 PF00515.28 TPR_1 Repeat 1 34 34 32.0 6.9e-08 1 CL0020
Cotton_A_06005_CDS 44 286 44 286 PF00141.23 peroxidase Domain 1 229 229 271.6 5.5e-81 1 CL0617
Cotton_A_05524_CDS 30 111 30 113 PF02359.18 CDC48_N Domain 1 84 85 80.6 7.1e-23 1 CL0332
Cotton_A_05524_CDS 132 195 130 196 PF02933.17 CDC48_2 Domain 3 63 64 40.5 1.8e-10 1 CL0402
Cotton_A_05524_CDS 245 374 245 375 PF00004.29 AAA Domain 1 131 132 163.7 2.7e-48 1 CL0023
Cotton_A_05524_CDS 397 438 397 442 PF17862.1 AAA_lid_3 Domain 1 42 45 53.8 1.2e-14 1 CL0671
Cotton_A_05524_CDS 518 651 518 651 PF00004.29 AAA Domain 1 132 132 159.3 6.4e-47 1 CL0023
Cotton_A_05524_CDS 674 713 673 715 PF17862.1 AAA_lid_3 Domain 2 40 45 47.3 1.3e-12 1 CL0671
Cotton_A_17361_CDS 53 107 51 108 PF00403.26 HMA Domain 3 61 62 43.6 3.1e-11 1 No_clan
Cotton_A_14545_CDS 59 177 53 194 PF00675.20 Peptidase_M16 Family 8 119 149 90.3 1.2e-25 1 CL0094
Cotton_A_14545_CDS 214 392 212 395 PF05193.21 Peptidase_M16_C Domain 3 180 183 51.7 1.1e-13 1 CL0094
Cotton_A_14545_CDS 714 888 701 891 PF05193.21 Peptidase_M16_C Domain 16 179 183 48.8 7.7e-13 1 CL0094
Cotton_A_28495_CDS 62 118 56 120 PF01145.25 Band_7 Family 106 162 178 28.6 1.3e-06 1 CL0433
Cotton_A_03895_CDS 134 163 133 163 PF01535.20 PPR Family 2 31 31 20.6 0.00036 1 CL0020
Cotton_A_03895_CDS 167 212 165 213 PF13041.6 PPR_2 Repeat 3 48 50 37.2 2.5e-09 1 CL0020
Cotton_A_03895_CDS 313 338 311 339 PF01535.20 PPR Family 5 30 31 14.2 0.039 1 CL0020
Cotton_A_03895_CDS 347 373 345 373 PF01535.20 PPR Family 4 30 31 17.8 0.0028 1 CL0020
Cotton_A_32978_CDS 197 230 197 230 PF12579.8 DUF3755 Family 1 34 34 58.5 3.7e-16 1 No_clan
Cotton_A_19054_CDS 215 286 185 289 PF00954.20 S_locus_glycop Domain 38 107 111 29.9 6.2e-07 1 No_clan
Cotton_A_19054_CDS 478 735 475 738 PF00069.25 Pkinase Domain 5 258 264 155.5 1.7e-45 1 CL0016
Cotton_A_06248_CDS 334 420 318 431 PF00201.18 UDPGT Family 328 410 499 41.0 1e-10 1 CL0113
Cotton_A_14719_CDS 271 634 271 635 PF03081.15 Exo70 Family 1 375 376 395.2 3e-118 1 CL0295
Cotton_A_35502_CDS 33 90 33 90 PF08246.12 Inhibitor_I29 Domain 1 58 58 69.1 3.3e-19 1 No_clan
Cotton_A_35502_CDS 119 333 119 334 PF00112.23 Peptidase_C1 Domain 1 217 218 252.5 4.5e-75 1 CL0125
Cotton_A_13344_CDS 78 168 73 168 PF08414.10 NADPH_Ox Family 15 101 101 59.0 4.5e-16 1 CL0220
Cotton_A_13344_CDS 315 472 314 472 PF01794.19 Ferric_reduct Family 2 125 125 69.2 3.5e-19 1 CL0328
Cotton_A_13344_CDS 515 615 513 615 PF08022.12 FAD_binding_8 Domain 3 109 109 90.2 8.5e-26 1 CL0076
Cotton_A_13344_CDS 621 785 621 786 PF08030.12 NAD_binding_6 Domain 1 155 156 142.3 1.3e-41 1 CL0091
Cotton_A_05682_CDS 161 446 124 453 PF00295.17 Glyco_hydro_28 Domain 47 317 325 170.7 4.1e-50 1 CL0268
Cotton_A_26041_CDS 9 116 3 119 PF01758.16 SBF Family 27 141 195 77.8 8.4e-22 1 CL0064
Cotton_A_32190_CDS 1 78 1 81 PF09495.10 DUF2462 Family 1 74 77 34.3 2.9e-08 1 No_clan
Cotton_A_31918_CDS 14 132 10 134 PF14551.6 MCM_N Domain 5 102 104 62.9 3.6e-17 1 No_clan
Cotton_A_31918_CDS 143 273 142 275 PF17207.3 MCM_OB Domain 2 124 126 113.6 5.1e-33 1 CL0021
Cotton_A_31918_CDS 314 486 313 487 PF00493.23 MCM Domain 2 174 224 271.4 3.9e-81 1 CL0023
Cotton_A_17797_CDS 140 197 136 199 PF13187.6 Fer4_9 Family 4 49 51 27.5 2.5e-06 1 CL0344
Cotton_A_17797_CDS 214 405 214 406 PF12617.8 LdpA_C Family 1 185 186 205.0 7.3e-61 1 No_clan
Cotton_A_12611_CDS 102 257 102 257 PF08389.12 Xpo1 Family 1 149 149 81.1 8.1e-23 1 CL0020
Cotton_A_40944_CDS 48 86 42 90 PF14327.6 CSTF2_hinge Family 39 77 81 34.6 1.9e-08 1 No_clan
Cotton_A_40944_CDS 380 414 377 414 PF14304.6 CSTF_C Domain 6 40 41 40.7 1.3e-10 1 No_clan
Cotton_A_18783_CDS 633 679 633 679 PF07496.15 zf-CW Domain 1 48 48 56.8 1.7e-15 1 No_clan
Cotton_A_34620_CDS 206 429 202 431 PF04577.14 DUF563 Family 5 202 209 64.5 1.5e-17 1 No_clan
Cotton_A_06336_CDS 177 233 177 233 PF06830.11 Root_cap Family 1 57 57 88.8 1.8e-25 1 No_clan
Cotton_A_31039_CDS 25 345 25 346 PF00332.18 Glyco_hydro_17 Domain 1 312 313 238.2 1.6e-70 1 CL0058
Cotton_A_31039_CDS 367 436 367 437 PF07983.13 X8 Domain 1 75 76 53.4 3e-14 1 No_clan
Cotton_A_16326_CDS 23 152 17 161 PF00892.20 EamA Family 7 134 137 44.8 1.3e-11 1 CL0184
Cotton_A_16326_CDS 191 330 190 331 PF00892.20 EamA Family 2 136 137 31.7 1.4e-07 1 CL0184
Cotton_A_02969_CDS 31 137 31 138 PF00011.21 HSP20 Family 1 101 102 78.0 5e-22 1 CL0190
Cotton_A_03824_CDS 546 583 545 598 PF07529.13 HSA Domain 5 42 71 34.3 2.2e-08 1 CL0023
Cotton_A_03824_CDS 1052 1100 1052 1115 PF13921.6 Myb_DNA-bind_6 Domain 1 41 60 27.7 2.4e-06 1 CL0123
Cotton_A_22184_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 53.3 2.2e-14 1 CL0123
Cotton_A_22184_CDS 67 111 67 112 PF00249.31 Myb_DNA-binding Domain 1 45 46 55.9 3.5e-15 1 CL0123
Cotton_A_05513_CDS 100 529 88 541 PF00067.22 p450 Domain 26 448 463 286.1 4.6e-85 1 No_clan
Cotton_A_09119_CDS 11 215 11 217 PF04654.12 DUF599 Family 1 207 210 262.5 2.1e-78 1 No_clan
Cotton_A_06777_CDS 101 170 98 170 PF00364.22 Biotin_lipoyl Domain 5 73 73 64.3 6.5e-18 1 CL0105
Cotton_A_06777_CDS 241 469 239 469 PF00198.23 2-oxoacid_dh Domain 3 233 233 270.1 1.4e-80 1 CL0149
Cotton_A_25507_CDS 88 353 83 358 PF00069.25 Pkinase Domain 6 259 264 146.5 8.9e-43 1 CL0016
Cotton_A_34684_CDS 7 62 5 62 PF13855.6 LRR_8 Repeat 6 61 61 34.8 9.9e-09 1 CL0022
Cotton_A_07334_CDS 25 123 23 180 PF07734.13 FBA_1 Family 4 106 164 24.6 1.9e-05 1 CL0162
Cotton_A_41326_CDS 8 120 1 126 PF14223.6 Retrotran_gag_2 Family 19 132 138 38.1 1.1e-09 1 CL0523
Cotton_A_39476_CDS 209 414 185 433 PF00201.18 UDPGT Family 221 409 499 106.4 1.6e-30 1 CL0113
Cotton_A_00259_CDS 125 224 122 224 PF03168.13 LEA_2 Domain 4 101 101 48.1 1.3e-12 1 CL0159
Cotton_A_35959_CDS 25 56 21 59 PF00400.32 WD40 Repeat 5 35 38 20.1 0.00085 1 CL0186
Cotton_A_35959_CDS 69 105 67 105 PF00400.32 WD40 Repeat 3 38 38 42.3 8.4e-11 1 CL0186
Cotton_A_35959_CDS 110 147 109 147 PF00400.32 WD40 Repeat 2 38 38 34.9 1.7e-08 1 CL0186
Cotton_A_35959_CDS 151 189 151 189 PF00400.32 WD40 Repeat 1 38 38 39.7 5.5e-10 1 CL0186
Cotton_A_35959_CDS 194 232 192 232 PF00400.32 WD40 Repeat 2 38 38 23.0 0.0001 1 CL0186
Cotton_A_35959_CDS 236 276 236 277 PF00400.32 WD40 Repeat 1 37 38 22.3 0.00017 1 CL0186
Cotton_A_35959_CDS 282 320 281 321 PF00400.32 WD40 Repeat 2 37 38 24.0 5e-05 1 CL0186
Cotton_A_14847_CDS 85 109 84 110 PF13912.6 zf-C2H2_6 Domain 2 26 27 49.6 2.6e-13 1 CL0361
Cotton_A_14847_CDS 137 160 136 162 PF13912.6 zf-C2H2_6 Domain 2 25 27 47.3 1.4e-12 1 CL0361
Cotton_A_34661_CDS 11 53 9 56 PF00643.24 zf-B_box Domain 3 39 42 25.7 9.3e-06 1 No_clan
Cotton_A_34661_CDS 55 93 52 95 PF00643.24 zf-B_box Domain 4 40 42 25.2 1.3e-05 1 No_clan
Cotton_A_34661_CDS 310 352 310 353 PF06203.14 CCT Motif 1 43 44 56.1 2.7e-15 1 CL0281
Cotton_A_22633_CDS 38 109 38 110 PF07983.13 X8 Domain 1 75 76 76.4 2.1e-21 1 No_clan
Cotton_A_20804_CDS 3 88 1 89 PF01657.17 Stress-antifung Family 7 94 95 58.6 7.2e-16 1 No_clan
Cotton_A_20804_CDS 107 202 101 202 PF01657.17 Stress-antifung Family 7 95 95 52.9 4.2e-14 1 No_clan
Cotton_A_15604_CDS 54 119 53 121 PF00505.19 HMG_box Domain 2 66 69 34.4 2.3e-08 1 CL0114
Cotton_A_15604_CDS 249 326 245 394 PF03145.16 Sina Family 5 87 200 44.9 1.2e-11 1 CL0389
Cotton_A_26413_CDS 3 54 3 54 PF08100.11 Dimerisation Domain 1 51 51 61.0 7.9e-17 1 CL0123
Cotton_A_26413_CDS 104 309 104 309 PF00891.18 Methyltransf_2 Domain 1 210 210 224.5 8.4e-67 1 CL0063
Cotton_A_09483_CDS 5 295 3 296 PF05653.14 Mg_trans_NIPA Family 3 294 295 436.2 5e-131 1 CL0184
Cotton_A_40257_CDS 66 184 66 184 PF00411.19 Ribosomal_S11 Family 1 110 110 160.0 2.2e-47 1 CL0267
Cotton_A_30737_CDS 33 159 31 159 PF02812.18 ELFV_dehydrog_N Domain 3 130 130 167.9 9.3e-50 1 CL0603
Cotton_A_30737_CDS 176 401 176 405 PF00208.21 ELFV_dehydrog Domain 1 236 243 255.0 8e-76 1 CL0063
Cotton_A_38689_CDS 30 300 28 306 PF00069.25 Pkinase Domain 3 259 264 146.3 1.1e-42 1 CL0016
Cotton_A_22831_CDS 3 207 1 208 PF00248.21 Aldo_ket_red Domain 107 293 294 86.4 1.8e-24 1 No_clan
Cotton_A_02992_CDS 22 140 20 140 PF00238.19 Ribosomal_L14 Domain 4 122 122 123.6 4.5e-36 1 No_clan
Cotton_A_12040_CDS 25 463 25 464 PF04922.12 DIE2_ALG10 Family 1 395 396 428.1 3.9e-128 1 CL0111
Cotton_A_15540_CDS 25 95 22 95 PF02201.18 SWIB Domain 4 74 74 74.2 5.5e-21 1 No_clan
Cotton_A_01961_CDS 30 385 30 385 PF00262.18 Calreticulin Family 1 367 367 469.6 5.6e-141 1 CL0004
Cotton_A_31062_CDS 9 72 3 74 PF00240.23 ubiquitin Domain 8 70 72 30.0 3.1e-07 1 CL0072
Cotton_A_31062_CDS 86 155 86 157 PF00240.23 ubiquitin Domain 1 70 72 55.5 3.5e-15 1 CL0072
Cotton_A_13301_CDS 53 187 52 187 PF02469.22 Fasciclin Domain 2 128 128 70.5 1.4e-19 1 No_clan
Cotton_A_25125_CDS 1657 2072 1655 2072 PF03568.17 Peptidase_C50 Family 3 395 395 342.8 2.8e-102 1 CL0093
Cotton_A_31297_CDS 18 77 17 77 PF09072.10 TMA7 Family 3 62 62 82.4 3e-23 1 No_clan
Cotton_A_28004_CDS 15 157 13 166 PF05873.12 Mt_ATP-synt_D Family 5 145 154 71.1 9.2e-20 1 No_clan
Cotton_A_23338_CDS 242 398 95 407 PF00201.18 UDPGT Family 267 412 499 92.8 2.1e-26 1 CL0113
Cotton_A_38616_CDS 54 173 52 175 PF01569.21 PAP2 Family 3 132 136 71.9 4.3e-20 1 CL0525
Cotton_A_00344_CDS 26 588 26 593 PF04734.13 Ceramidase_alk Domain 1 491 507 745.4 2.8e-224 1 No_clan
Cotton_A_00344_CDS 590 752 590 752 PF17048.5 Ceramidse_alk_C Domain 1 168 168 181.7 1e-53 1 CL0159
Cotton_A_08286_CDS 38 122 34 133 PF00651.31 BTB Domain 11 97 111 25.4 1.3e-05 1 CL0033
Cotton_A_08286_CDS 211 481 211 481 PF03000.14 NPH3 Family 1 258 258 282.9 2.7e-84 1 No_clan
Cotton_A_16720_CDS 1 456 1 456 PF06219.12 DUF1005 Family 1 437 437 641.3 8.6e-193 1 No_clan
Cotton_A_04521_CDS 35 139 34 141 PF07732.15 Cu-oxidase_3 Domain 3 117 119 91.9 2.8e-26 1 CL0026
Cotton_A_04521_CDS 153 288 151 291 PF00394.22 Cu-oxidase Domain 3 156 159 73.1 2.7e-20 1 CL0026
Cotton_A_06085_CDS 114 156 111 175 PF00170.21 bZIP_1 Family 4 46 64 41.4 1.1e-10 1 CL0018
Cotton_A_28779_CDS 6 53 5 55 PF12937.7 F-box-like Domain 3 45 48 25.0 1.3e-05 1 CL0271
Cotton_A_00481_CDS 74 485 74 485 PF01603.20 B56 Family 1 415 415 610.7 1.3e-183 1 CL0020
Cotton_A_15947_CDS 22 527 17 528 PF01602.20 Adaptin_N Family 11 445 524 261.7 1.2e-77 1 CL0020
Cotton_A_34902_CDS 14 275 14 275 PF00069.25 Pkinase Domain 1 264 264 202.3 8.5e-60 1 CL0016
Cotton_A_36175_CDS 25 61 13 65 PF11960.8 DUF3474 Family 92 128 135 30.6 3.3e-07 1 No_clan
Cotton_A_36175_CDS 85 345 82 349 PF00487.24 FA_desaturase Domain 2 248 254 110.8 9.3e-32 1 No_clan
Cotton_A_13682_CDS 42 167 42 168 PF08153.12 NGP1NT Domain 1 129 130 161.4 1.1e-47 1 No_clan
Cotton_A_13682_CDS 310 396 309 430 PF01926.23 MMR_HSR1 Family 2 84 114 55.4 5.6e-15 1 CL0023
Cotton_A_20700_CDS 39 186 37 186 PF04043.15 PMEI Domain 5 154 154 73.4 2.5e-20 1 No_clan
Cotton_A_20700_CDS 252 549 251 550 PF01095.19 Pectinesterase Family 2 297 298 465.2 5.6e-140 1 CL0268
Cotton_A_18044_CDS 43 189 42 189 PF04043.15 PMEI Domain 2 154 154 74.4 1.2e-20 1 No_clan
Cotton_A_18044_CDS 245 542 245 543 PF01095.19 Pectinesterase Family 1 297 298 409.8 4.3e-123 1 CL0268
Cotton_A_23507_CDS 144 258 144 259 PF15249.6 GLTSCR1 Family 1 101 102 96.6 9.6e-28 1 No_clan
Cotton_A_12420_CDS 116 176 116 177 PF04844.13 Ovate Family 1 57 58 86.4 9.2e-25 1 No_clan
Cotton_A_21384_CDS 28 102 27 103 PF01253.22 SUI1 Domain 2 76 77 91.8 2.9e-26 1 No_clan
Cotton_A_04282_CDS 305 360 305 361 PF05383.17 La Domain 1 58 59 82.6 1.5e-23 1 CL0123
Cotton_A_07286_CDS 34 301 34 301 PF07651.16 ANTH Domain 1 277 277 292.1 3.1e-87 1 CL0009
Cotton_A_04963_CDS 31 127 30 127 PF01657.17 Stress-antifung Family 2 95 95 79.2 2.8e-22 1 No_clan
Cotton_A_04963_CDS 146 241 142 241 PF01657.17 Stress-antifung Family 7 95 95 49.5 5.1e-13 1 No_clan
Cotton_A_00790_CDS 15 86 15 87 PF04564.15 U-box Domain 1 72 73 75.1 3.6e-21 1 CL0229
Cotton_A_04669_CDS 149 209 148 209 PF04117.12 Mpv17_PMP22 Family 2 62 62 65.2 4.6e-18 1 No_clan
Cotton_A_07612_CDS 253 287 252 288 PF08238.12 Sel1 Repeat 2 37 38 34.3 2.5e-08 1 CL0020
Cotton_A_07612_CDS 293 323 289 324 PF08238.12 Sel1 Repeat 5 37 38 25.6 1.4e-05 1 CL0020
Cotton_A_07612_CDS 326 358 326 360 PF08238.12 Sel1 Repeat 2 36 38 26.1 9.9e-06 1 CL0020
Cotton_A_07612_CDS 364 395 361 396 PF08238.12 Sel1 Repeat 4 37 38 20.5 0.00055 1 CL0020
Cotton_A_07612_CDS 401 431 397 432 PF08238.12 Sel1 Repeat 5 37 38 6.8 12 1 CL0020
Cotton_A_07612_CDS 446 464 438 464 PF08238.12 Sel1 Repeat 20 38 38 4.3 69 1 CL0020
Cotton_A_07612_CDS 514 537 513 543 PF08238.12 Sel1 Repeat 2 27 38 8.4 3.5 1 CL0020
Cotton_A_07612_CDS 549 583 549 584 PF08238.12 Sel1 Repeat 1 37 38 25.2 1.9e-05 1 CL0020
Cotton_A_01480_CDS 34 103 33 104 PF04564.15 U-box Domain 2 71 73 70.7 8.6e-20 1 CL0229
Cotton_A_01480_CDS 168 204 168 205 PF00514.23 Arm Repeat 4 40 41 30.0 3.6e-07 1 CL0020
Cotton_A_31317_CDS 94 115 94 116 PF00560.33 LRR_1 Repeat 1 22 23 13.9 0.06 1 CL0022
Cotton_A_35989_CDS 99 134 97 144 PF12799.7 LRR_4 Repeat 3 39 44 27.9 2.2e-06 1 CL0022
Cotton_A_35989_CDS 239 298 238 298 PF13855.6 LRR_8 Repeat 2 61 61 41.5 8.5e-11 1 CL0022
Cotton_A_35989_CDS 350 412 346 415 PF07714.17 Pkinase_Tyr Domain 5 73 259 35.9 4.7e-09 1 CL0016
Cotton_A_35989_CDS 414 445 412 458 PF07714.17 Pkinase_Tyr Domain 171 203 259 24.4 1.5e-05 1 CL0016
Cotton_A_10781_CDS 52 149 52 150 PF02298.17 Cu_bind_like Domain 1 83 84 22.7 7.3e-05 1 CL0026
Cotton_A_03165_CDS 130 224 59 224 PF00583.25 Acetyltransf_1 Family 44 117 117 43.7 2.8e-11 1 CL0257
Cotton_A_12532_CDS 84 316 84 317 PF07859.13 Abhydrolase_3 Domain 1 210 211 196.0 6.9e-58 1 CL0028
Cotton_A_31397_CDS 79 131 78 132 PF04770.12 ZF-HD_dimer Family 2 54 55 99.7 8.5e-29 1 No_clan
Cotton_A_35380_CDS 5 43 1 47 PF01397.21 Terpene_synth Domain 50 88 192 33.6 3e-08 1 No_clan
Cotton_A_35380_CDS 47 121 46 121 PF01397.21 Terpene_synth Domain 114 192 192 83.9 1.1e-23 1 No_clan
Cotton_A_35380_CDS 152 196 152 197 PF03936.16 Terpene_synth_C Domain 1 46 267 44.1 1.6e-11 1 CL0613
Cotton_A_08742_CDS 54 315 52 316 PF00481.21 PP2C Family 3 257 258 218.9 8.5e-65 1 CL0238
Cotton_A_30641_CDS 6 42 5 42 PF14369.6 zinc_ribbon_9 Domain 2 35 35 48.5 7.3e-13 1 CL0167
Cotton_A_30641_CDS 188 230 187 230 PF13639.6 zf-RING_2 Domain 2 44 44 42.6 5.7e-11 1 CL0229
Cotton_A_30641_CDS 248 351 248 361 PF06547.12 DUF1117 Family 1 110 113 76.4 2.5e-21 1 No_clan
Cotton_A_27332_CDS 129 269 94 269 PF04116.13 FA_hydroxylase Family 2 133 133 71.5 8e-20 1 No_clan
Cotton_A_27332_CDS 451 621 451 621 PF12076.8 Wax2_C Domain 1 164 164 221.5 4.9e-66 1 No_clan
Cotton_A_11555_CDS 13 441 1 443 PF02458.15 Transferase Family 13 427 434 168.8 1.5e-49 1 CL0149
Cotton_A_34230_CDS 61 213 61 214 PF02605.15 PsaL Family 1 149 150 194.2 8.8e-58 1 No_clan
Cotton_A_03784_CDS 91 189 91 189 PF04526.13 DUF568 Family 1 101 101 97.1 8.5e-28 1 No_clan
Cotton_A_40221_CDS 74 257 74 257 PF13419.6 HAD_2 Family 1 178 178 90.8 1.1e-25 1 CL0137
Cotton_A_40221_CDS 441 535 441 536 PF13905.6 Thioredoxin_8 Domain 1 94 95 46.7 2.9e-12 1 CL0172
Cotton_A_40221_CDS 644 669 644 671 PF01436.21 NHL Repeat 1 25 28 27.0 2.9e-06 1 CL0186
Cotton_A_08714_CDS 11 102 11 103 PF09177.11 Syntaxin-6_N Domain 1 98 99 78.6 3.9e-22 1 No_clan
Cotton_A_16065_CDS 171 221 170 222 PF00847.20 AP2 Domain 2 53 54 47.9 1.1e-12 1 CL0081
Cotton_A_20803_CDS 36 130 35 131 PF01657.17 Stress-antifung Family 2 94 95 77.2 1.1e-21 1 No_clan
Cotton_A_20803_CDS 150 240 146 243 PF01657.17 Stress-antifung Family 7 90 95 35.9 8.7e-09 1 No_clan
Cotton_A_24974_CDS 91 343 82 344 PF00481.21 PP2C Family 12 257 258 219.8 4.8e-65 1 CL0238
Cotton_A_28330_CDS 10 203 9 246 PF00069.25 Pkinase Domain 2 187 264 80.1 1.6e-22 1 CL0016
Cotton_A_32167_CDS 13 228 13 228 PF00314.17 Thaumatin Domain 1 214 214 251.4 6.9e-75 1 CL0293
Cotton_A_16554_CDS 51 377 51 377 PF05623.12 DUF789 Family 1 294 294 353.2 1.4e-105 1 No_clan
Cotton_A_27195_CDS 2 138 1 176 PF00149.28 Metallophos Domain 7 136 204 28.7 1.7e-06 1 CL0163
Cotton_A_06133_CDS 528 811 521 813 PF00128.24 Alpha-amylase Domain 13 324 337 71.6 8.2e-20 1 CL0058
Cotton_A_06133_CDS 832 890 832 890 PF07821.12 Alpha-amyl_C2 Domain 1 58 58 78.1 4.4e-22 1 CL0369
Cotton_A_06872_CDS 183 405 181 406 PF03407.16 Nucleotid_trans Family 3 212 212 188.3 1.7e-55 1 CL0110
Cotton_A_18010_CDS 26 90 25 90 PF00808.23 CBFD_NFYB_HMF Domain 2 65 65 96.2 9.8e-28 1 CL0012
Cotton_A_07679_CDS 101 199 77 204 PF00782.20 DSPc Domain 32 127 133 63.5 1.7e-17 1 CL0031
Cotton_A_04660_CDS 7 178 6 178 PF13967.6 RSN1_TM Family 2 156 156 170.6 2e-50 1 No_clan
Cotton_A_04660_CDS 199 361 199 361 PF14703.6 PHM7_cyt Domain 1 176 176 153.4 6.8e-45 1 CL0221
Cotton_A_04660_CDS 372 644 372 644 PF02714.15 RSN1_7TM Family 1 274 274 259.0 4.8e-77 1 CL0416
Cotton_A_34977_CDS 60 178 60 178 PF09187.10 RdDM_RDM1 Domain 1 119 119 219.5 7.8e-66 1 No_clan
Cotton_A_00071_CDS 258 430 258 430 PF12214.8 TPX2_importin Family 1 166 166 192.5 5.8e-57 1 No_clan
Cotton_A_00071_CDS 591 646 591 647 PF06886.11 TPX2 Family 1 56 57 57.2 1.5e-15 1 No_clan
Cotton_A_16801_CDS 73 171 70 172 PF00085.20 Thioredoxin Domain 4 102 103 99.8 7e-29 1 CL0172
Cotton_A_34153_CDS 55 159 54 160 PF00169.29 PH Domain 2 104 105 51.9 9.1e-14 1 CL0266
Cotton_A_34153_CDS 216 359 216 364 PF00620.27 RhoGAP Domain 1 146 152 90.0 1.3e-25 1 CL0409
Cotton_A_34153_CDS 537 612 532 613 PF14389.6 Lzipper-MIP1 Family 6 83 84 55.5 5.3e-15 1 No_clan
Cotton_A_06630_CDS 110 448 110 453 PF00295.17 Glyco_hydro_28 Domain 1 320 325 314.9 5.4e-94 1 CL0268
Cotton_A_32777_CDS 15 156 12 158 PF00892.20 EamA Family 4 135 137 36.1 6.3e-09 1 CL0184
Cotton_A_32777_CDS 187 325 186 326 PF00892.20 EamA Family 2 136 137 60.0 2.6e-16 1 CL0184
Cotton_A_22092_CDS 95 171 95 172 PF03330.18 DPBB_1 Domain 1 82 83 81.9 2.9e-23 1 CL0199
Cotton_A_22092_CDS 183 260 183 260 PF01357.21 Pollen_allerg_1 Domain 1 80 80 98.7 1.4e-28 1 CL0159
Cotton_A_16233_CDS 100 461 93 484 PF00202.21 Aminotran_3 Domain 10 376 406 230.4 3e-68 1 CL0061
Cotton_A_15844_CDS 53 163 53 165 PF14226.6 DIOX_N Family 1 116 118 101.9 3.6e-29 1 CL0029
Cotton_A_15844_CDS 213 255 211 264 PF03171.20 2OG-FeII_Oxy Domain 3 44 101 29.3 8.9e-07 1 CL0029
Cotton_A_22551_CDS 209 256 208 258 PF13041.6 PPR_2 Repeat 2 48 50 34.9 1.3e-08 1 CL0020
Cotton_A_22551_CDS 279 327 279 328 PF13041.6 PPR_2 Repeat 1 49 50 33.7 3e-08 1 CL0020
Cotton_A_10585_CDS 29 443 25 445 PF00999.21 Na_H_Exchanger Family 5 379 381 204.6 2e-60 1 CL0064
Cotton_A_04832_CDS 138 302 105 303 PF01025.19 GrpE Family 20 165 166 173.3 3.2e-51 1 No_clan
Cotton_A_23089_CDS 193 351 192 353 PF01764.25 Lipase_3 Family 2 140 142 128.0 2.3e-37 1 CL0028
Cotton_A_13737_CDS 60 82 60 82 PF00096.26 zf-C2H2 Domain 1 23 23 17.3 0.0048 1 CL0361
Cotton_A_07447_CDS 26 111 26 111 PF05922.16 Inhibitor_I9 Domain 1 82 82 54.6 1.3e-14 1 CL0570
Cotton_A_07447_CDS 139 579 139 604 PF00082.22 Peptidase_S8 Domain 1 268 298 123.5 9.7e-36 1 No_clan
Cotton_A_07447_CDS 394 469 378 472 PF02225.22 PA Family 20 86 89 39.1 5.7e-10 1 CL0364
Cotton_A_29601_CDS 92 137 90 157 PF03171.20 2OG-FeII_Oxy Domain 3 47 101 31.5 1.9e-07 1 CL0029
Cotton_A_18970_CDS 99 136 99 145 PF00097.25 zf-C3HC4 Domain 1 34 41 25.8 7e-06 1 CL0229
Cotton_A_18970_CDS 168 229 167 229 PF01485.21 IBR Domain 2 62 62 40.8 1.9e-10 1 CL0229
Cotton_A_18970_CDS 248 298 240 300 PF01485.21 IBR Domain 9 60 62 36.8 3.3e-09 1 CL0229
Cotton_A_32930_CDS 149 381 144 382 PF00931.22 NB-ARC Domain 6 251 252 173.4 4.8e-51 1 CL0023
Cotton_A_32930_CDS 515 572 515 572 PF13855.6 LRR_8 Repeat 1 59 61 46.3 2.6e-12 1 CL0022
Cotton_A_35146_CDS 70 185 58 188 PF02309.16 AUX_IAA Family 96 230 237 70.6 1.8e-19 1 CL0072
Cotton_A_28771_CDS 41 128 37 129 PF08066.12 PMC2NT Domain 6 91 92 31.8 1.7e-07 1 No_clan
Cotton_A_28771_CDS 279 442 276 445 PF01612.20 DNA_pol_A_exo1 Domain 4 173 176 145.6 1.2e-42 1 CL0219
Cotton_A_28771_CDS 499 555 498 565 PF00570.23 HRDC Domain 2 58 68 45.1 7.5e-12 1 CL0426
Cotton_A_25972_CDS 111 226 109 228 PF01426.18 BAH Domain 3 120 122 56.4 2.5e-15 1 No_clan
Cotton_A_25972_CDS 331 466 330 467 PF07500.14 TFIIS_M Domain 2 111 112 66.9 2e-18 1 No_clan
Cotton_A_03495_CDS 21 49 18 55 PF14244.6 Retrotran_gag_3 Family 12 40 48 24.1 2.2e-05 1 CL0523
Cotton_A_37630_CDS 2 74 1 76 PF04802.15 SMK-1 Family 93 165 191 71.9 6e-20 1 No_clan
Cotton_A_14074_CDS 66 162 25 166 PF02309.16 AUX_IAA Family 117 225 237 109.6 2.1e-31 1 CL0072
Cotton_A_36269_CDS 37 148 37 148 PF10153.9 Efg1 Family 1 114 114 106.5 9.7e-31 1 No_clan
Cotton_A_40086_CDS 7 91 6 93 PF03083.16 MtN3_slv Family 2 85 87 83.4 8.5e-24 1 CL0141
Cotton_A_40086_CDS 130 211 127 213 PF03083.16 MtN3_slv Family 4 85 87 80.4 7.6e-23 1 CL0141
Cotton_A_18394_CDS 1689 1751 1689 1754 PF05641.12 Agenet Domain 1 58 61 41.7 1.2e-10 1 CL0049
Cotton_A_24711_CDS 41 354 40 354 PF01916.17 DS Domain 2 288 288 416.6 4.7e-125 1 CL0085
Cotton_A_10591_CDS 29 367 28 450 PF01156.19 IU_nuc_hydro Domain 2 270 305 127.1 9.8e-37 1 No_clan
Cotton_A_10591_CDS 497 846 497 847 PF01156.19 IU_nuc_hydro Domain 1 304 305 137.5 7.1e-40 1 No_clan
Cotton_A_38303_CDS 11 113 2 113 PF02458.15 Transferase Family 325 434 434 49.5 2.4e-13 1 CL0149
Cotton_A_39970_CDS 58 335 58 335 PF01545.21 Cation_efflux Family 1 199 199 164.0 3.6e-48 1 No_clan
Cotton_A_04646_CDS 102 317 101 318 PF04755.12 PAP_fibrillin Family 2 197 198 264.6 6e-79 1 No_clan
Cotton_A_18264_CDS 19 97 19 97 PF03134.19 TB2_DP1_HVA22 Family 1 77 77 84.1 4.7e-24 1 No_clan
Cotton_A_04606_CDS 193 248 192 253 PF13812.6 PPR_3 Repeat 2 57 63 26.4 5.2e-06 1 CL0020
Cotton_A_04606_CDS 274 321 274 322 PF13041.6 PPR_2 Repeat 2 49 50 32.4 7.5e-08 1 CL0020
Cotton_A_04606_CDS 325 413 310 429 PF17177.4 PPR_long Domain 70 158 212 34.7 1.1e-08 1 CL0020
Cotton_A_04606_CDS 453 480 452 481 PF01535.20 PPR Family 3 30 31 9.4 1.4 1 CL0020
Cotton_A_04606_CDS 489 516 486 516 PF01535.20 PPR Family 4 31 31 12.0 0.2 1 CL0020
Cotton_A_38902_CDS 29 110 8 118 PF01061.24 ABC2_membrane Family 52 132 210 40.8 1.5e-10 1 CL0181
Cotton_A_06783_CDS 52 383 51 383 PF01148.20 CTP_transf_1 Family 2 266 266 281.6 7.8e-84 1 CL0234
Cotton_A_19782_CDS 23 56 16 56 PF00187.19 Chitin_bind_1 Domain 6 38 38 35.7 8.9e-09 1 No_clan
Cotton_A_19782_CDS 70 217 70 221 PF00182.19 Glyco_hydro_19 Domain 1 160 232 147.5 5.4e-43 1 CL0037
Cotton_A_19782_CDS 221 268 216 268 PF00182.19 Glyco_hydro_19 Domain 185 232 232 34.8 1.6e-08 1 CL0037
Cotton_A_27859_CDS 218 263 201 263 PF01485.21 IBR Domain 19 62 62 41.9 8.8e-11 1 CL0229
Cotton_A_11264_CDS 258 509 257 509 PF07137.11 VDE Domain 2 238 238 163.2 7e-48 1 CL0116
Cotton_A_16297_CDS 491 529 490 530 PF00514.23 Arm Repeat 2 40 41 26.8 3.7e-06 1 CL0020
Cotton_A_16297_CDS 1996 2095 1995 2095 PF00168.30 C2 Domain 2 103 103 47.8 1.4e-12 1 CL0154
Cotton_A_10153_CDS 78 355 78 356 PF03644.13 Glyco_hydro_85 Family 1 301 302 306.8 1.6e-91 1 CL0058
Cotton_A_16822_CDS 37 127 34 144 PF00651.31 BTB Domain 6 98 111 30.5 3.4e-07 1 CL0033
Cotton_A_16822_CDS 206 459 206 459 PF03000.14 NPH3 Family 1 258 258 297.9 6.8e-89 1 No_clan
Cotton_A_00400_CDS 21 143 21 144 PF00241.20 Cofilin_ADF Domain 1 120 121 125.5 9.6e-37 1 CL0092
Cotton_A_09350_CDS 154 390 152 390 PF00931.22 NB-ARC Domain 4 252 252 245.7 4.1e-73 1 CL0023
Cotton_A_09350_CDS 525 585 525 585 PF13855.6 LRR_8 Repeat 1 61 61 29.1 6.2e-07 1 CL0022
Cotton_A_10511_CDS 138 413 128 419 PF00069.25 Pkinase Domain 39 255 264 87.0 1.3e-24 1 CL0016
Cotton_A_15433_CDS 14 119 14 125 PF16639.5 Apocytochr_F_N Domain 1 106 155 165.6 9.8e-49 1 No_clan
Cotton_A_35240_CDS 43 79 41 79 PF00400.32 WD40 Repeat 3 38 38 19.8 0.0011 1 CL0186
Cotton_A_35240_CDS 84 123 84 123 PF00400.32 WD40 Repeat 1 38 38 23.0 0.0001 1 CL0186
Cotton_A_30897_CDS 57 85 55 85 PF01535.20 PPR Family 3 31 31 22.5 8.6e-05 1 CL0020
Cotton_A_30897_CDS 86 114 86 115 PF01535.20 PPR Family 1 29 31 23.8 3.3e-05 1 CL0020
Cotton_A_30897_CDS 118 146 117 147 PF01535.20 PPR Family 2 30 31 21.9 0.00014 1 CL0020
Cotton_A_30897_CDS 216 263 215 264 PF13041.6 PPR_2 Repeat 2 49 50 37.6 1.9e-09 1 CL0020
Cotton_A_30897_CDS 292 318 292 319 PF01535.20 PPR Family 4 30 31 16.4 0.0077 1 CL0020
Cotton_A_30897_CDS 349 397 348 397 PF13041.6 PPR_2 Repeat 2 50 50 46.2 3.7e-12 1 CL0020
Cotton_A_30897_CDS 430 455 430 457 PF01535.20 PPR Family 4 29 31 18.0 0.0024 1 CL0020
Cotton_A_30897_CDS 456 502 455 504 PF13041.6 PPR_2 Repeat 2 48 50 36.3 4.7e-09 1 CL0020
Cotton_A_30897_CDS 530 555 529 557 PF01535.20 PPR Family 2 27 31 16.7 0.0063 1 CL0020
Cotton_A_27826_CDS 62 118 60 119 PF02825.20 WWE Family 6 66 68 30.6 3.7e-07 1 No_clan
Cotton_A_27826_CDS 261 355 228 384 PF00644.20 PARP Family 36 124 195 27.5 2e-06 1 CL0084
Cotton_A_27826_CDS 423 478 419 480 PF12174.8 RST Domain 10 65 67 41.9 6.9e-11 1 No_clan
Cotton_A_12016_CDS 93 462 93 462 PF03372.23 Exo_endo_phos Domain 1 233 233 72.4 3.7e-20 1 CL0530
Cotton_A_38612_CDS 58 105 58 110 PF00917.26 MATH Domain 1 46 113 24.0 3.4e-05 1 CL0389
Cotton_A_38612_CDS 111 154 104 154 PF00917.26 MATH Domain 74 113 113 19.7 0.00074 1 CL0389
Cotton_A_38612_CDS 172 493 172 493 PF00443.29 UCH Family 1 257 257 156.6 8e-46 1 CL0125
Cotton_A_38612_CDS 597 849 597 849 PF12436.8 USP7_ICP0_bdg Family 1 240 240 247.4 1.2e-73 1 CL0072
Cotton_A_38612_CDS 935 1048 934 1048 PF14533.6 USP7_C2 Family 100 206 206 92.9 2.1e-26 1 CL0072
Cotton_A_01531_CDS 72 251 71 251 PF14543.6 TAXi_N Domain 2 178 178 126.4 1.4e-36 1 CL0129
Cotton_A_01531_CDS 271 411 270 412 PF14541.6 TAXi_C Domain 2 160 161 60.2 2e-16 1 CL0129
Cotton_A_06497_CDS 445 637 392 642 PF01594.16 AI-2E_transport Family 128 322 327 36.9 2.2e-09 1 No_clan
Cotton_A_18049_CDS 48 194 47 194 PF04043.15 PMEI Domain 2 154 154 78.3 7.6e-22 1 No_clan
Cotton_A_18049_CDS 247 544 247 545 PF01095.19 Pectinesterase Family 1 297 298 405.2 1.1e-121 1 CL0268
Cotton_A_18049_CDS 588 809 584 811 PF01095.19 Pectinesterase Family 57 296 298 194.6 1.5e-57 1 CL0268
Cotton_A_23718_CDS 11 66 10 66 PF00046.29 Homeodomain Domain 2 57 57 54.6 7.2e-15 1 CL0123
Cotton_A_03983_CDS 33 69 32 69 PF08263.12 LRRNT_2 Family 4 41 41 43.2 3.6e-11 1 No_clan
Cotton_A_03983_CDS 119 135 119 136 PF13516.6 LRR_6 Repeat 1 16 24 12.4 0.13 1 CL0022
Cotton_A_03983_CDS 145 167 145 167 PF00560.33 LRR_1 Repeat 1 23 23 10.9 0.59 1 CL0022
Cotton_A_03983_CDS 194 253 193 253 PF13855.6 LRR_8 Repeat 2 61 61 33.1 3.5e-08 1 CL0022
Cotton_A_03983_CDS 529 543 528 545 PF13516.6 LRR_6 Repeat 3 17 24 9.6 1 1 CL0022
Cotton_A_03983_CDS 683 952 682 955 PF00069.25 Pkinase Domain 2 260 264 157.7 3.6e-46 1 CL0016
Cotton_A_17595_CDS 34 286 34 286 PF00856.28 SET Family 1 169 169 44.0 3.1e-11 1 No_clan
Cotton_A_12410_CDS 97 203 95 213 PF03004.14 Transposase_24 Family 3 131 142 37.4 2.4e-09 1 No_clan
Cotton_A_11466_CDS 97 186 89 188 PF12068.8 PH_RBD Domain 78 166 169 57.3 1.3e-15 1 CL0266
Cotton_A_11466_CDS 360 587 359 588 PF00566.18 RabGAP-TBC Family 2 214 215 173.4 5.1e-51 1 No_clan
Cotton_A_09957_CDS 169 223 136 224 PF12894.7 ANAPC4_WD40 Repeat 36 91 92 24.5 2.4e-05 1 CL0186
Cotton_A_09957_CDS 250 282 246 282 PF00400.32 WD40 Repeat 7 38 38 17.3 0.0063 1 CL0186
Cotton_A_09957_CDS 292 327 287 327 PF00400.32 WD40 Repeat 6 38 38 16.4 0.012 1 CL0186
Cotton_A_09957_CDS 354 390 353 391 PF00400.32 WD40 Repeat 2 37 38 28.6 1.7e-06 1 CL0186
Cotton_A_30487_CDS 6 21 5 22 PF00642.24 zf-CCCH Family 11 26 27 22.6 7.4e-05 1 CL0537
Cotton_A_30487_CDS 40 64 39 64 PF00642.24 zf-CCCH Family 3 27 27 37.5 1.5e-09 1 CL0537
Cotton_A_30487_CDS 85 109 83 109 PF00642.24 zf-CCCH Family 3 27 27 39.6 3.3e-10 1 CL0537
Cotton_A_30487_CDS 228 253 227 253 PF00642.24 zf-CCCH Family 2 27 27 39.4 3.7e-10 1 CL0537
Cotton_A_30487_CDS 274 298 273 299 PF00642.24 zf-CCCH Family 2 26 27 27.9 1.5e-06 1 CL0537
Cotton_A_24544_CDS 3 63 1 64 PF13947.6 GUB_WAK_bind Domain 46 105 106 32.0 1.7e-07 1 No_clan
Cotton_A_32521_CDS 1 403 1 406 PF00421.19 PSII Family 37 504 507 433.4 1.1e-129 1 No_clan
Cotton_A_28074_CDS 3 101 1 103 PF00334.19 NDK Domain 37 132 135 116.1 1.1e-33 1 No_clan
Cotton_A_03853_CDS 61 386 61 395 PF07992.14 Pyr_redox_2 Domain 1 285 294 199.2 8.2e-59 1 CL0063
Cotton_A_04704_CDS 8 121 8 121 PF02136.20 NTF2 Domain 1 120 120 112.8 1.3e-32 1 CL0051
Cotton_A_15120_CDS 151 417 148 419 PF00069.25 Pkinase Domain 4 260 264 154.1 4.3e-45 1 CL0016
Cotton_A_12113_CDS 110 196 109 197 PF13813.6 MBOAT_2 Family 2 82 83 62.3 3.9e-17 1 CL0517
Cotton_A_29001_CDS 14 60 10 60 PF00400.32 WD40 Repeat 5 37 38 15.5 0.024 1 CL0186
Cotton_A_26903_CDS 28 74 27 74 PF00319.18 SRF-TF Domain 2 48 48 82.1 1.4e-23 1 No_clan
Cotton_A_19723_CDS 38 152 37 153 PF07732.15 Cu-oxidase_3 Domain 2 118 119 141.8 9e-42 1 CL0026
Cotton_A_19723_CDS 167 313 163 314 PF00394.22 Cu-oxidase Domain 5 158 159 148.1 2.3e-43 1 CL0026
Cotton_A_19723_CDS 413 546 412 547 PF07731.14 Cu-oxidase_2 Domain 2 136 137 135.2 1.2e-39 1 CL0026
Cotton_A_18647_CDS 160 492 160 492 PF10250.9 O-FucT Family 1 336 336 248.8 1.2e-73 1 CL0113
Cotton_A_26075_CDS 93 129 92 131 PF08207.12 EFP_N Domain 20 56 58 27.2 2.9e-06 1 CL0107
Cotton_A_26075_CDS 139 192 139 192 PF01132.20 EFP Domain 1 54 54 48.2 7.9e-13 1 CL0021
Cotton_A_26075_CDS 435 648 430 649 PF07724.14 AAA_2 Domain 9 170 171 116.5 1.3e-33 1 CL0023
Cotton_A_26075_CDS 655 727 655 738 PF10431.9 ClpB_D2-small Domain 1 69 81 45.3 6.7e-12 1 CL0671
Cotton_A_29749_CDS 29 113 12 115 PF00410.19 Ribosomal_S8 Domain 39 125 127 36.8 3.3e-09 1 No_clan
Cotton_A_08845_CDS 14 87 11 88 PF00892.20 EamA Family 4 75 137 27.4 3.2e-06 1 CL0184
Cotton_A_08845_CDS 155 293 154 294 PF00892.20 EamA Family 2 136 137 44.3 1.9e-11 1 CL0184
Cotton_A_18460_CDS 13 241 12 241 PF01182.20 Glucosamine_iso Domain 2 225 225 172.5 1.2e-50 1 CL0246
Cotton_A_30826_CDS 37 345 37 345 PF01074.22 Glyco_hydro_38N Domain 1 289 289 307.2 1.1e-91 1 CL0158
Cotton_A_30826_CDS 350 442 350 442 PF09261.11 Alpha-mann_mid Domain 1 96 96 77.8 5.1e-22 1 CL0599
Cotton_A_30826_CDS 598 812 596 812 PF07748.13 Glyco_hydro_38C Domain 3 214 214 171.2 3.2e-50 1 CL0103
Cotton_A_30826_CDS 894 1003 894 1004 PF17677.1 Glyco_hydro38C2 Domain 1 68 69 42.7 4.6e-11 1 CL0369
Cotton_A_20588_CDS 4 85 2 86 PF00276.20 Ribosomal_L23 Family 3 84 86 68.0 6.8e-19 1 No_clan
Cotton_A_19850_CDS 420 669 419 669 PF07891.12 DUF1666 Family 2 246 246 328.5 2.9e-98 1 No_clan
Cotton_A_02472_CDS 100 151 100 151 PF12906.7 RINGv Domain 1 48 48 37.4 2.1e-09 1 CL0229
Cotton_A_15786_CDS 43 80 41 85 PF00646.33 F-box Domain 3 40 48 28.3 1.1e-06 1 CL0271
Cotton_A_15786_CDS 170 214 170 215 PF01344.25 Kelch_1 Repeat 1 45 46 43.1 2.3e-11 1 CL0186
Cotton_A_15786_CDS 217 266 217 266 PF01344.25 Kelch_1 Repeat 1 46 46 42.6 3.3e-11 1 CL0186
Cotton_A_05867_CDS 1 33 1 34 PF04419.14 4F5 Family 3 36 38 37.0 4.5e-09 1 CL0361
Cotton_A_34398_CDS 17 132 14 135 PF01417.20 ENTH Domain 8 122 125 27.4 2.8e-06 1 CL0009
Cotton_A_23905_CDS 2 59 1 60 PF13456.6 RVT_3 Domain 64 123 124 36.5 3.5e-09 1 CL0219
Cotton_A_28857_CDS 315 392 280 408 PF00782.20 DSPc Domain 33 110 133 30.4 2.7e-07 1 CL0031
Cotton_A_28857_CDS 429 511 427 515 PF16561.5 AMPK1_CBM Family 3 81 85 69.1 2.8e-19 1 CL0369
Cotton_A_23725_CDS 59 303 59 304 PF00069.25 Pkinase Domain 1 250 264 229.8 3.6e-68 1 CL0016
Cotton_A_30741_CDS 73 359 71 360 PF01095.19 Pectinesterase Family 3 297 298 208.4 9.5e-62 1 CL0268
Cotton_A_03793_CDS 47 136 44 136 PF00254.28 FKBP_C Domain 4 94 94 124.1 2.1e-36 1 CL0487
Cotton_A_03024_CDS 27 512 24 514 PF00083.24 Sugar_tr Family 3 449 452 161.9 2.4e-47 1 CL0015
Cotton_A_23423_CDS 18 78 18 86 PF00076.22 RRM_1 Domain 1 60 70 61.5 5e-17 1 CL0221
Cotton_A_19241_CDS 77 228 76 228 PF04043.15 PMEI Domain 2 154 154 110.9 7e-32 1 No_clan
Cotton_A_19241_CDS 286 583 286 584 PF01095.19 Pectinesterase Family 1 297 298 483.8 1.3e-145 1 CL0268
Cotton_A_22077_CDS 324 485 322 485 PF12783.7 Sec7_N Domain 3 158 158 120.6 5.4e-35 1 No_clan
Cotton_A_22077_CDS 571 739 570 752 PF01369.20 Sec7 Domain 2 167 183 206.6 2.4e-61 1 No_clan
Cotton_A_32683_CDS 41 381 41 393 PF07690.16 MFS_1 Family 1 300 353 100.0 1.3e-28 1 CL0015
Cotton_A_15610_CDS 55 184 51 184 PF01566.18 Nramp Family 44 173 358 137.4 5.8e-40 1 CL0062
Cotton_A_15020_CDS 36 87 36 87 PF00249.31 Myb_DNA-binding Domain 1 46 46 32.1 9.8e-08 1 CL0123
Cotton_A_15020_CDS 143 189 142 189 PF14379.6 Myb_CC_LHEQLE Family 2 48 48 84.3 3.3e-24 1 No_clan
Cotton_A_35849_CDS 22 69 22 71 PF13041.6 PPR_2 Repeat 1 48 50 32.8 5.7e-08 1 CL0020
Cotton_A_26395_CDS 38 74 36 79 PF00646.33 F-box Domain 3 39 48 25.6 8.1e-06 1 CL0271
Cotton_A_22940_CDS 332 645 332 646 PF01501.20 Glyco_transf_8 Family 1 255 256 320.0 1.1e-95 1 CL0110
Cotton_A_39377_CDS 113 156 112 156 PF13639.6 zf-RING_2 Domain 2 44 44 43.7 2.6e-11 1 CL0229
Cotton_A_06975_CDS 76 173 72 175 PF01429.19 MBD Domain 8 75 77 57.3 9.6e-16 1 CL0081
Cotton_A_02259_CDS 52 169 41 174 PF00177.21 Ribosomal_S7 Domain 16 126 149 77.7 6.8e-22 1 No_clan
Cotton_A_02259_CDS 217 336 217 337 PF00917.26 MATH Domain 1 112 113 74.8 5.8e-21 1 CL0389
Cotton_A_02259_CDS 355 676 355 676 PF00443.29 UCH Family 1 257 257 156.8 7e-46 1 CL0125
Cotton_A_02259_CDS 780 1032 780 1032 PF12436.8 USP7_ICP0_bdg Family 1 240 240 247.5 1.1e-73 1 CL0072
Cotton_A_02259_CDS 1042 1253 1041 1260 PF14533.6 USP7_C2 Family 2 191 206 169.4 7.9e-50 1 CL0072
Cotton_A_06765_CDS 23 203 22 203 PF00722.21 Glyco_hydro_16 Domain 2 177 177 203.6 1.6e-60 1 CL0004
Cotton_A_06765_CDS 235 277 231 277 PF06955.12 XET_C Family 4 47 47 76.8 8.3e-22 1 CL0004
Cotton_A_21164_CDS 38 157 36 157 PF10218.9 DUF2054 Family 3 132 132 118.1 2.7e-34 1 No_clan
Cotton_A_15054_CDS 5 298 4 299 PF04733.14 Coatomer_E Family 2 289 290 440.7 2.5e-132 1 CL0020
Cotton_A_31392_CDS 50 109 46 110 PF04083.16 Abhydro_lipase Family 5 63 64 63.0 1.4e-17 1 CL0028
Cotton_A_31392_CDS 115 391 91 394 PF00561.20 Abhydrolase_1 Domain 21 254 257 41.1 1.6e-10 1 CL0028
Cotton_A_16683_CDS 27 209 27 238 PF01490.18 Aa_trans Family 1 174 409 169.9 7.1e-50 1 CL0062
Cotton_A_16683_CDS 243 439 236 440 PF01490.18 Aa_trans Family 221 408 409 161.2 3.1e-47 1 CL0062
Cotton_A_24795_CDS 82 201 82 201 PF01641.18 SelR Family 1 121 121 172.7 2.8e-51 1 CL0080
Cotton_A_20647_CDS 20 98 19 98 PF05899.12 Cupin_3 Domain 2 74 74 92.8 7.9e-27 1 CL0029
Cotton_A_19214_CDS 38 123 38 123 PF02298.17 Cu_bind_like Domain 1 84 84 92.7 1.1e-26 1 CL0026
Cotton_A_02058_CDS 4 58 4 58 PF05207.13 zf-CSL Domain 1 59 59 74.6 3.8e-21 1 CL0167
Cotton_A_06856_CDS 17 190 17 191 PF01595.20 DUF21 Domain 1 175 176 122.3 1.7e-35 1 No_clan
Cotton_A_35866_CDS 29 105 29 106 PF14569.6 zf-UDP Domain 1 77 78 139.8 2.3e-41 1 CL0229
Cotton_A_35866_CDS 365 1082 365 1088 PF03552.14 Cellulose_synt Family 1 714 722 1355.6 0 1 CL0110
Cotton_A_34597_CDS 82 135 82 135 PF14416.6 PMR5N Domain 1 53 53 78.0 4.8e-22 1 No_clan
Cotton_A_34597_CDS 136 426 136 427 PF13839.6 PC-Esterase Family 1 282 283 286.4 3e-85 1 CL0264
Cotton_A_31360_CDS 21 117 21 126 PF00933.21 Glyco_hydro_3 Domain 1 99 319 45.0 9.2e-12 1 CL0058
Cotton_A_31360_CDS 139 371 139 373 PF00933.21 Glyco_hydro_3 Domain 97 317 319 164.6 3.5e-48 1 CL0058
Cotton_A_31360_CDS 410 618 410 619 PF01915.22 Glyco_hydro_3_C Domain 1 202 204 117.9 5.6e-34 1 No_clan
Cotton_A_24489_CDS 21 199 11 202 PF00069.25 Pkinase Domain 102 259 264 75.2 5.3e-21 1 CL0016
Cotton_A_24489_CDS 277 349 248 350 PF12796.7 Ank_2 Repeat 14 81 83 41.0 2.2e-10 1 CL0465
Cotton_A_24489_CDS 358 405 356 409 PF13637.6 Ank_4 Repeat 3 51 55 31.0 2.7e-07 1 CL0465
Cotton_A_24489_CDS 481 564 466 565 PF12796.7 Ank_2 Repeat 10 82 83 53.0 4e-14 1 CL0465
Cotton_A_24489_CDS 696 760 692 760 PF18346.1 SH3_15 Domain 12 65 65 57.7 1.1e-15 1 CL0010
Cotton_A_24489_CDS 766 886 766 886 PF18346.1 SH3_15 Domain 1 65 65 57.5 1.3e-15 1 CL0010
Cotton_A_24489_CDS 892 940 892 945 PF18346.1 SH3_15 Domain 1 56 65 25.0 1.7e-05 1 CL0010
Cotton_A_24489_CDS 948 1010 938 1011 PF18346.1 SH3_15 Domain 12 63 65 33.9 3e-08 1 CL0010
Cotton_A_24489_CDS 1018 1138 1018 1139 PF18346.1 SH3_15 Domain 1 64 65 63.6 1.6e-17 1 CL0010
Cotton_A_24489_CDS 1145 1266 1145 1266 PF18346.1 SH3_15 Domain 1 65 65 67.4 1e-18 1 CL0010
Cotton_A_24489_CDS 1329 1393 1327 1394 PF18346.1 SH3_15 Domain 12 64 65 48.5 8e-13 1 CL0010
Cotton_A_21809_CDS 18 71 5 72 PF16363.5 GDP_Man_Dehyd Domain 278 331 332 30.8 1.9e-07 1 CL0063
Cotton_A_29152_CDS 200 264 200 265 PF00076.22 RRM_1 Domain 1 69 70 41.1 1.1e-10 1 CL0221
Cotton_A_29152_CDS 285 350 285 350 PF00076.22 RRM_1 Domain 1 70 70 46.0 3.4e-12 1 CL0221
Cotton_A_29152_CDS 696 792 696 792 PF04059.12 RRM_2 Family 1 97 97 184.6 2.6e-55 1 CL0221
Cotton_A_21548_CDS 95 283 94 283 PF04669.13 Polysacc_synt_4 Family 2 190 190 235.7 2.8e-70 1 No_clan
Cotton_A_06288_CDS 79 912 31 913 PF11145.8 DUF2921 Family 62 893 894 766.1 4.3e-230 1 No_clan
Cotton_A_39995_CDS 75 118 72 119 PF00411.19 Ribosomal_S11 Family 61 96 110 29.3 8.7e-07 1 CL0267
Cotton_A_17246_CDS 39 128 35 174 PF00931.22 NB-ARC Domain 6 101 252 46.8 2.1e-12 1 CL0023
Cotton_A_20368_CDS 6 241 5 241 PF00335.20 Tetraspanin Family 2 229 229 107.1 1.1e-30 1 CL0347
Cotton_A_25401_CDS 17 117 12 117 PF02109.16 DAD Family 7 109 109 129.9 4.5e-38 1 No_clan
Cotton_A_01066_CDS 71 123 71 123 PF00010.26 HLH Domain 1 53 53 47.2 1.6e-12 1 No_clan
Cotton_A_22313_CDS 2 106 2 109 PF01187.18 MIF Domain 1 104 114 56.6 2.8e-15 1 CL0082
Cotton_A_19143_CDS 16 63 16 63 PF00249.31 Myb_DNA-binding Domain 1 46 46 60.6 1.2e-16 1 CL0123
Cotton_A_19143_CDS 69 113 69 114 PF00249.31 Myb_DNA-binding Domain 1 45 46 54.7 8.5e-15 1 CL0123
Cotton_A_27662_CDS 90 136 89 136 PF14379.6 Myb_CC_LHEQLE Family 2 48 48 79.5 1e-22 1 No_clan
Cotton_A_06730_CDS 101 221 101 221 PF07227.11 PHD_Oberon Family 1 130 130 122.5 9.7e-36 1 CL0390
Cotton_A_00319_CDS 4 67 4 67 PF00226.31 DnaJ Domain 1 63 63 93.4 6.9e-27 1 CL0392
Cotton_A_00319_CDS 167 325 167 325 PF01556.18 DnaJ_C Domain 1 148 148 154.8 1.6e-45 1 No_clan
Cotton_A_34847_CDS 10 48 9 48 PF08263.12 LRRNT_2 Family 2 41 41 45.0 9.4e-12 1 No_clan
Cotton_A_34847_CDS 134 153 133 156 PF00560.33 LRR_1 Repeat 2 21 23 11.1 0.5 1 CL0022
Cotton_A_34847_CDS 280 299 280 302 PF00560.33 LRR_1 Repeat 1 20 23 10.3 0.92 1 CL0022
Cotton_A_34847_CDS 455 502 455 512 PF13855.6 LRR_8 Repeat 1 48 61 31.1 1.5e-07 1 CL0022
Cotton_A_34847_CDS 517 572 513 572 PF13855.6 LRR_8 Repeat 6 61 61 27.8 1.6e-06 1 CL0022
Cotton_A_12350_CDS 38 468 37 476 PF00067.22 p450 Domain 2 442 463 177.1 5.3e-52 1 No_clan
Cotton_A_21600_CDS 24 118 24 118 PF00338.22 Ribosomal_S10 Family 1 98 98 97.7 3.5e-28 1 No_clan
Cotton_A_19769_CDS 12 48 12 48 PF08071.12 RS4NT Domain 1 37 37 68.1 4.9e-19 1 No_clan
Cotton_A_19769_CDS 52 99 51 99 PF01479.25 S4 Domain 2 48 48 29.0 6.5e-07 1 CL0492
Cotton_A_19769_CDS 104 178 104 178 PF00900.20 Ribosomal_S4e Family 1 75 75 115.7 6.3e-34 1 CL0021
Cotton_A_19769_CDS 186 219 186 220 PF00467.29 KOW Family 1 31 32 27.0 2.9e-06 1 CL0107
Cotton_A_19769_CDS 221 267 221 268 PF16121.5 40S_S4_C Family 1 47 48 80.3 5.6e-23 1 No_clan
Cotton_A_05552_CDS 1 75 1 75 PF01439.18 Metallothio_2 Family 1 81 81 97.7 5.3e-28 1 No_clan
Cotton_A_05614_CDS 35 169 30 172 PF10604.9 Polyketide_cyc2 Family 7 137 143 56.4 3.9e-15 1 CL0209
Cotton_A_30419_CDS 28 171 28 171 PF00810.18 ER_lumen_recept Family 1 147 147 178.0 1.9e-52 1 CL0141
Cotton_A_36443_CDS 66 471 66 472 PF05577.12 Peptidase_S28 Domain 1 433 434 234.8 1.6e-69 1 CL0028
Cotton_A_32164_CDS 230 392 194 393 PF04909.14 Amidohydro_2 Domain 132 290 291 49.1 6.4e-13 1 CL0034
Cotton_A_32164_CDS 517 846 516 851 PF00120.24 Gln-synt_C Domain 2 339 345 305.7 3.6e-91 1 CL0286
Cotton_A_24145_CDS 88 237 87 261 PF00270.29 DEAD Domain 2 153 176 123.1 1e-35 1 CL0023
Cotton_A_24145_CDS 239 348 236 350 PF00888.22 Cullin Family 207 314 618 74.3 7.9e-21 1 No_clan
Cotton_A_17509_CDS 16 53 14 65 PF16455.5 UBD Domain 3 39 104 30.2 4.2e-07 1 No_clan
Cotton_A_17509_CDS 79 137 55 138 PF16455.5 UBD Domain 40 103 104 65.1 5.6e-18 1 No_clan
Cotton_A_13859_CDS 10 133 9 134 PF02365.15 NAM Family 2 125 126 118.7 2.9e-34 1 No_clan
Cotton_A_24239_CDS 197 318 196 318 PF10539.9 Dev_Cell_Death Domain 2 127 127 158.4 7.3e-47 1 No_clan
Cotton_A_17728_CDS 86 368 84 368 PF00069.25 Pkinase Domain 3 264 264 216.2 5.2e-64 1 CL0016
Cotton_A_05463_CDS 17 131 16 132 PF06058.13 DCP1 Family 2 116 117 148.5 7.3e-44 1 CL0266
Cotton_A_24345_CDS 16 133 5 135 PF13537.6 GATase_7 Domain 10 121 123 65.4 4.3e-18 1 CL0052
Cotton_A_18027_CDS 108 274 97 281 PF12348.8 CLASP_N Family 45 210 227 29.9 3.8e-07 1 CL0020
Cotton_A_02450_CDS 101 124 101 128 PF01535.20 PPR Family 1 24 31 12.0 0.2 1 CL0020
Cotton_A_02450_CDS 200 247 199 249 PF13041.6 PPR_2 Repeat 2 48 50 34.3 2e-08 1 CL0020
Cotton_A_02450_CDS 275 299 273 302 PF01535.20 PPR Family 3 27 31 16.4 0.0079 1 CL0020
Cotton_A_02450_CDS 304 330 304 334 PF01535.20 PPR Family 1 27 31 22.1 0.00012 1 CL0020
Cotton_A_02450_CDS 333 376 332 380 PF13041.6 PPR_2 Repeat 2 45 50 33.3 4e-08 1 CL0020
Cotton_A_02450_CDS 408 431 405 435 PF01535.20 PPR Family 4 27 31 9.9 0.91 1 CL0020
Cotton_A_02450_CDS 436 481 433 482 PF13041.6 PPR_2 Repeat 4 49 50 43.8 2.1e-11 1 CL0020
Cotton_A_02450_CDS 509 532 507 535 PF01535.20 PPR Family 3 26 31 10.9 0.45 1 CL0020
Cotton_A_02450_CDS 575 602 574 603 PF01535.20 PPR Family 3 30 31 13.2 0.083 1 CL0020
Cotton_A_12912_CDS 197 309 196 317 PF04859.12 DUF641 Family 2 119 128 113.7 7.1e-33 1 No_clan
Cotton_A_10179_CDS 141 218 141 249 PF01648.20 ACPS Domain 1 81 114 59.5 3.2e-16 1 CL0670
Cotton_A_16092_CDS 156 471 156 472 PF01546.28 Peptidase_M20 Family 1 206 207 125.6 2e-36 1 CL0035
Cotton_A_16092_CDS 269 362 263 365 PF07687.14 M20_dimer Domain 9 104 109 26.9 3.6e-06 1 No_clan
Cotton_A_15132_CDS 2 39 1 39 PF08263.12 LRRNT_2 Family 4 41 41 25.8 9.7e-06 1 No_clan
Cotton_A_15132_CDS 166 225 165 225 PF13855.6 LRR_8 Repeat 2 61 61 37.7 1.3e-09 1 CL0022
Cotton_A_15132_CDS 572 714 570 716 PF00069.25 Pkinase Domain 127 260 264 57.2 1.5e-15 1 CL0016
Cotton_A_40338_CDS 35 118 2 118 PF02519.14 Auxin_inducible Family 17 90 90 99.3 1e-28 1 No_clan
Cotton_A_06117_CDS 66 246 56 246 PF11744.8 ALMT Family 286 469 469 120.4 9e-35 1 CL0307
Cotton_A_07913_CDS 142 185 141 185 PF13639.6 zf-RING_2 Domain 2 44 44 53.2 2.7e-14 1 CL0229
Cotton_A_05331_CDS 53 90 52 97 PF00717.23 Peptidase_S24 Domain 2 38 70 28.4 1.2e-06 1 CL0299
Cotton_A_38238_CDS 95 214 95 217 PF08839.11 CDT1 Domain 1 134 175 55.4 8.8e-15 1 CL0123
Cotton_A_38238_CDS 489 579 489 584 PF16679.5 CDT1_C Domain 1 91 96 70.4 1.3e-19 1 CL0123
Cotton_A_11770_CDS 3 32 1 36 PF08704.10 GCD14 Family 137 167 247 37.0 2.9e-09 1 CL0063
Cotton_A_05036_CDS 81 217 81 219 PF01565.23 FAD_binding_4 Domain 1 136 139 99.5 1.3e-28 1 CL0077
Cotton_A_05036_CDS 475 533 475 533 PF08031.12 BBE Domain 1 46 46 64.5 7e-18 1 CL0277
Cotton_A_34638_CDS 15 126 15 139 PF00179.26 UQ_con Domain 1 112 140 74.2 7.7e-21 1 CL0208
Cotton_A_11085_CDS 6 76 6 80 PF04564.15 U-box Domain 1 69 73 66.0 2.5e-18 1 CL0229
Cotton_A_05085_CDS 30 346 30 347 PF12819.7 Malectin_like Domain 1 335 336 192.3 1.2e-56 1 CL0202
Cotton_A_05085_CDS 440 498 439 498 PF13855.6 LRR_8 Repeat 2 61 61 33.5 2.5e-08 1 CL0022
Cotton_A_05085_CDS 617 883 614 885 PF00069.25 Pkinase Domain 4 260 264 167.6 3.4e-49 1 CL0016
Cotton_A_25724_CDS 196 261 191 263 PF00076.22 RRM_1 Domain 6 68 70 32.9 4.2e-08 1 CL0221
Cotton_A_25724_CDS 297 368 297 368 PF00076.22 RRM_1 Domain 1 70 70 78.9 1.8e-22 1 CL0221
Cotton_A_25724_CDS 388 487 388 488 PF15519.6 RBM39linker Domain 1 90 91 85.2 4.9e-24 1 No_clan
Cotton_A_25724_CDS 493 546 492 547 PF00076.22 RRM_1 Domain 12 69 70 24.9 1.3e-05 1 CL0221
Cotton_A_32918_CDS 232 272 229 274 PF13920.6 zf-C3HC4_3 Domain 4 48 50 30.8 1.9e-07 1 CL0229
Cotton_A_03267_CDS 98 281 97 281 PF00856.28 SET Family 2 169 169 50.5 3.1e-13 1 No_clan
Cotton_A_03267_CDS 315 447 314 447 PF09273.11 Rubis-subs-bind Domain 2 129 129 72.1 6.8e-20 1 No_clan
Cotton_A_00508_CDS 107 241 107 242 PF13837.6 Myb_DNA-bind_4 Domain 1 89 90 77.5 7.5e-22 1 CL0123
Cotton_A_11636_CDS 11 146 10 149 PF10358.9 NT-C2 Family 2 143 146 68.7 4.3e-19 1 CL0154
Cotton_A_15279_CDS 570 703 570 707 PF04548.16 AIG1 Domain 1 132 212 100.4 8.8e-29 1 CL0023
Cotton_A_15279_CDS 928 1191 927 1193 PF11886.8 TOC159_MAD Family 2 265 267 406.4 3.6e-122 1 No_clan
Cotton_A_15279_CDS 1198 1348 1194 1349 PF11886.8 TOC159_MAD Family 13 163 267 226.8 2.1e-67 1 No_clan
Cotton_A_19582_CDS 62 210 61 210 PF12638.7 Staygreen Domain 2 148 148 199.2 2.8e-59 1 No_clan
Cotton_A_19925_CDS 7 33 7 35 PF00036.32 EF-hand_1 Domain 1 27 29 26.0 4e-06 1 CL0220
Cotton_A_19925_CDS 45 70 41 71 PF13833.6 EF-hand_8 Domain 29 54 55 14.2 0.03 1 CL0220
Cotton_A_19925_CDS 78 141 77 141 PF13499.6 EF-hand_7 Domain 2 71 71 55.0 8.6e-15 1 CL0220
Cotton_A_36674_CDS 25 97 5 101 PF02519.14 Auxin_inducible Family 17 86 90 81.3 4.3e-23 1 No_clan
Cotton_A_30176_CDS 90 453 83 458 PF01546.28 Peptidase_M20 Family 20 201 207 54.8 1e-14 1 CL0035
Cotton_A_30176_CDS 233 321 229 356 PF07687.14 M20_dimer Domain 5 77 109 22.7 7e-05 1 No_clan
Cotton_A_04828_CDS 23 415 23 415 PF12056.8 DUF3537 Family 1 390 390 567.5 1.2e-170 1 No_clan
Cotton_A_27014_CDS 86 368 84 368 PF00069.25 Pkinase Domain 3 264 264 216.4 4.3e-64 1 CL0016
Cotton_A_10347_CDS 21 196 21 206 PF00069.25 Pkinase Domain 1 169 264 115.6 2.4e-33 1 CL0016
Cotton_A_10347_CDS 282 414 270 414 PF00069.25 Pkinase Domain 153 264 264 71.3 8e-20 1 CL0016
Cotton_A_03870_CDS 72 128 70 129 PF01344.25 Kelch_1 Repeat 4 45 46 22.0 9e-05 1 CL0186
Cotton_A_03870_CDS 131 179 131 179 PF01344.25 Kelch_1 Repeat 1 46 46 52.4 2.8e-14 1 CL0186
Cotton_A_03696_CDS 15 51 14 60 PF07647.17 SAM_2 Domain 4 41 66 35.1 1.1e-08 1 CL0003
Cotton_A_39788_CDS 2 51 1 51 PF00149.28 Metallophos Domain 160 204 204 28.0 2.8e-06 1 CL0163
Cotton_A_39788_CDS 66 124 66 130 PF14008.6 Metallophos_C Domain 1 59 63 59.7 3.7e-16 1 No_clan
Cotton_A_00873_CDS 1 136 1 147 PF16746.5 BAR_3 Domain 92 230 238 76.8 2e-21 1 CL0145
Cotton_A_00873_CDS 201 330 200 331 PF00169.29 PH Domain 2 104 105 46.8 3.4e-12 1 CL0266
Cotton_A_00873_CDS 376 499 371 502 PF01412.18 ArfGap Domain 6 114 117 113.4 6.1e-33 1 No_clan
Cotton_A_00873_CDS 589 632 582 633 PF13857.6 Ank_5 Repeat 10 55 56 36.9 3.1e-09 1 CL0465
Cotton_A_20694_CDS 33 138 33 139 PF04398.12 DUF538 Family 1 111 112 129.6 6.4e-38 1 No_clan
Cotton_A_26064_CDS 56 441 52 446 PF00999.21 Na_H_Exchanger Family 5 378 381 148.0 3.2e-43 1 CL0064
Cotton_A_28358_CDS 37 503 37 512 PF00067.22 p450 Domain 1 453 463 303.2 2.9e-90 1 No_clan
Cotton_A_11709_CDS 41 134 15 140 PF00179.26 UQ_con Domain 24 115 140 56.4 2.4e-15 1 CL0208
Cotton_A_30442_CDS 83 202 83 203 PF00581.20 Rhodanese Domain 1 106 107 50.3 2.7e-13 1 CL0031
Cotton_A_30442_CDS 252 367 251 368 PF00581.20 Rhodanese Domain 2 106 107 44.0 2.6e-11 1 CL0031
Cotton_A_05108_CDS 1 58 1 59 PF04783.12 DUF630 Family 1 58 59 75.4 3e-21 1 No_clan
Cotton_A_05108_CDS 331 676 330 678 PF04782.12 DUF632 Family 2 307 310 352.2 2.6e-105 1 No_clan
Cotton_A_35945_CDS 51 138 51 138 PF16656.5 Pur_ac_phosph_N Domain 1 94 94 69.0 3.9e-19 1 CL0159
Cotton_A_35945_CDS 147 256 145 270 PF00149.28 Metallophos Domain 3 114 204 36.1 9.2e-09 1 CL0163
Cotton_A_07292_CDS 70 226 67 229 PF17047.5 SMP_LBD Domain 4 160 180 52.7 3.5e-14 1 CL0648
Cotton_A_00261_CDS 141 294 139 303 PF01734.22 Patatin Family 3 195 204 39.9 4.9e-10 1 CL0323
Cotton_A_24922_CDS 301 411 300 413 PF16669.5 TTC5_OB Domain 2 113 115 118.3 1.3e-34 1 CL0021
Cotton_A_02695_CDS 9 169 7 170 PF06127.11 DUF962 Family 3 94 95 109.8 5.2e-32 1 No_clan
Cotton_A_38930_CDS 3 59 1 59 PF12215.8 Glyco_hydr_116N Family 254 312 312 36.8 2.9e-09 1 CL0103
Cotton_A_38930_CDS 176 414 176 422 PF04685.13 DUF608 Domain 1 241 361 333.4 1.8e-99 1 CL0059
Cotton_A_38930_CDS 432 557 425 557 PF04685.13 DUF608 Domain 234 361 361 138.9 2.3e-40 1 CL0059
Cotton_A_33790_CDS 88 424 86 425 PF10250.9 O-FucT Family 17 335 336 190.5 6.2e-56 1 CL0113
Cotton_A_12336_CDS 34 64 32 64 PF06200.14 tify Domain 3 34 34 56.9 8.9e-16 1 No_clan
Cotton_A_12336_CDS 98 118 96 119 PF09425.10 CCT_2 Motif 5 25 26 40.6 1.7e-10 1 CL0281
Cotton_A_18793_CDS 53 137 31 208 PF05175.14 MTS Domain 35 112 169 38.7 7.2e-10 1 CL0063
Cotton_A_40117_CDS 38 305 35 306 PF07714.17 Pkinase_Tyr Domain 4 258 259 147.7 3.8e-43 1 CL0016
Cotton_A_05330_CDS 1 121 1 122 PF15697.5 DUF4666 Family 1 110 111 123.3 6.9e-36 1 No_clan
Cotton_A_21682_CDS 112 161 106 161 PF00550.25 PP-binding Domain 19 67 67 41.2 1.6e-10 1 CL0314
Cotton_A_22324_CDS 1 21 1 21 PF08071.12 RS4NT Domain 17 37 37 29.4 6.5e-07 1 No_clan
Cotton_A_22324_CDS 29 72 24 72 PF01479.25 S4 Domain 6 48 48 28.1 1.2e-06 1 CL0492
Cotton_A_22324_CDS 77 151 77 151 PF00900.20 Ribosomal_S4e Family 1 75 75 119.2 5.1e-35 1 CL0021
Cotton_A_22324_CDS 159 192 159 193 PF00467.29 KOW Family 1 31 32 27.3 2.5e-06 1 CL0107
Cotton_A_22324_CDS 194 240 194 241 PF16121.5 40S_S4_C Family 1 47 48 92.0 1.3e-26 1 No_clan
Cotton_A_24992_CDS 29 103 26 105 PF01423.22 LSM Domain 4 65 67 67.4 6.7e-19 1 CL0527
Cotton_A_22089_CDS 26 53 25 55 PF17123.5 zf-RING_11 Domain 2 27 29 31.7 9.2e-08 1 CL0229
Cotton_A_34674_CDS 15 105 13 105 PF13650.6 Asp_protease_2 Domain 3 90 90 30.9 3.3e-07 1 CL0129
Cotton_A_32716_CDS 52 365 50 365 PF07992.14 Pyr_redox_2 Domain 3 294 294 178.0 2.3e-52 1 CL0063
Cotton_A_15247_CDS 37 127 16 130 PF07690.16 MFS_1 Family 42 128 353 35.1 6.8e-09 1 CL0015
Cotton_A_37486_CDS 25 204 23 204 PF04525.12 LOR Domain 3 187 187 197.1 1.9e-58 1 CL0395
Cotton_A_30213_CDS 2 64 1 66 PF13456.6 RVT_3 Domain 59 122 124 49.1 4.6e-13 1 CL0219
Cotton_A_22865_CDS 41 796 41 796 PF05664.11 DUF810 Family 1 686 686 916.4 1.2e-275 1 No_clan
Cotton_A_36268_CDS 64 113 64 113 PF13041.6 PPR_2 Repeat 1 50 50 30.6 2.8e-07 1 CL0020
Cotton_A_36268_CDS 140 166 140 167 PF01535.20 PPR Family 4 30 31 19.0 0.0011 1 CL0020
Cotton_A_36268_CDS 168 198 168 198 PF01535.20 PPR Family 1 31 31 38.1 9.1e-10 1 CL0020
Cotton_A_36268_CDS 199 227 199 229 PF01535.20 PPR Family 1 29 31 28.8 8.6e-07 1 CL0020
Cotton_A_36268_CDS 231 256 230 259 PF01535.20 PPR Family 2 27 31 18.5 0.0016 1 CL0020
Cotton_A_36268_CDS 259 287 257 287 PF12854.7 PPR_1 Repeat 6 34 34 36.4 3e-09 1 CL0020
Cotton_A_36268_CDS 293 321 292 322 PF01535.20 PPR Family 2 30 31 25.9 7.3e-06 1 CL0020
Cotton_A_36268_CDS 323 353 323 353 PF01535.20 PPR Family 1 31 31 13.7 0.058 1 CL0020
Cotton_A_36268_CDS 395 416 393 418 PF01535.20 PPR Family 3 24 31 14.2 0.04 1 CL0020
Cotton_A_36268_CDS 426 451 425 454 PF01535.20 PPR Family 3 28 31 21.0 0.00026 1 CL0020
Cotton_A_36268_CDS 497 520 496 523 PF01535.20 PPR Family 3 26 31 14.5 0.032 1 CL0020
Cotton_A_04540_CDS 13 79 11 80 PF04178.12 Got1 Family 38 112 113 29.9 6e-07 1 No_clan
Cotton_A_23383_CDS 46 84 45 85 PF08263.12 LRRNT_2 Family 2 40 41 39.9 3.9e-10 1 No_clan
Cotton_A_23383_CDS 209 269 209 269 PF13855.6 LRR_8 Repeat 1 61 61 37.1 2e-09 1 CL0022
Cotton_A_23383_CDS 719 938 716 964 PF00069.25 Pkinase Domain 4 200 264 126.3 1.3e-36 1 CL0016
Cotton_A_19508_CDS 9 262 9 262 PF00069.25 Pkinase Domain 1 264 264 244.2 1.4e-72 1 CL0016
Cotton_A_19508_CDS 308 366 308 367 PF03822.14 NAF Domain 1 52 54 62.4 3.3e-17 1 CL0573
Cotton_A_20671_CDS 76 147 72 148 PF13424.6 TPR_12 Repeat 5 76 77 35.4 1e-08 1 CL0020
Cotton_A_20671_CDS 280 309 280 316 PF13176.6 TPR_7 Repeat 1 30 36 15.0 0.018 1 CL0020
Cotton_A_20671_CDS 363 401 360 401 PF13374.6 TPR_10 Repeat 4 42 42 16.1 0.0075 1 CL0020
Cotton_A_20671_CDS 404 431 403 432 PF13181.6 TPR_8 Repeat 2 29 34 14.8 0.024 1 CL0020
Cotton_A_01604_CDS 20 189 2 190 PF03256.16 ANAPC10 Family 20 184 185 252.8 1.6e-75 1 CL0202
Cotton_A_08352_CDS 16 222 15 222 PF01015.18 Ribosomal_S3Ae Family 2 202 202 314.5 2.5e-94 1 No_clan
Cotton_A_03228_CDS 55 114 54 114 PF02427.17 PSI_PsaE Domain 2 60 60 101.6 1.3e-29 1 CL0610
Cotton_A_09739_CDS 1 97 1 97 PF07777.11 MFMR Family 1 97 97 103.0 9.1e-30 1 No_clan
Cotton_A_09739_CDS 136 273 136 273 PF16596.5 MFMR_assoc Disordered 1 134 134 170.8 1.9e-50 1 No_clan
Cotton_A_09739_CDS 306 368 306 369 PF00170.21 bZIP_1 Family 1 63 64 71.9 3.3e-20 1 CL0018
Cotton_A_39218_CDS 118 156 116 156 PF00514.23 Arm Repeat 4 41 41 30.2 3e-07 1 CL0020
Cotton_A_39218_CDS 201 237 199 239 PF00514.23 Arm Repeat 3 39 41 26.6 4.2e-06 1 CL0020
Cotton_A_39218_CDS 344 374 341 374 PF00514.23 Arm Repeat 11 41 41 24.0 2.9e-05 1 CL0020
Cotton_A_39218_CDS 378 415 376 416 PF00514.23 Arm Repeat 3 40 41 25.3 1.1e-05 1 CL0020
Cotton_A_02647_CDS 27 104 26 104 PF05922.16 Inhibitor_I9 Domain 2 82 82 51.8 9.5e-14 1 CL0570
Cotton_A_02647_CDS 127 583 127 599 PF00082.22 Peptidase_S8 Domain 1 285 298 179.2 1.1e-52 1 No_clan
Cotton_A_02647_CDS 370 453 367 453 PF02225.22 PA Family 4 89 89 37.3 2.1e-09 1 CL0364
Cotton_A_02647_CDS 656 758 656 758 PF17766.1 fn3_6 Domain 1 99 99 93.8 5.9e-27 1 CL0159
Cotton_A_14670_CDS 161 187 115 189 PF03765.15 CRAL_TRIO_N Domain 27 52 54 26.2 6.9e-06 1 CL0214
Cotton_A_14670_CDS 213 379 212 379 PF00650.20 CRAL_TRIO Domain 2 159 159 113.7 6.5e-33 1 CL0512
Cotton_A_38932_CDS 74 473 74 495 PF13520.6 AA_permease_2 Family 1 400 425 167.6 4e-49 1 CL0062
Cotton_A_38932_CDS 513 563 513 563 PF13906.6 AA_permease_C Domain 1 51 51 50.1 2.1e-13 1 CL0062
Cotton_A_21635_CDS 36 101 36 112 PF00067.22 p450 Domain 1 68 463 40.8 1.2e-10 1 No_clan
Cotton_A_21635_CDS 201 227 197 227 PF01535.20 PPR Family 5 31 31 12.0 0.19 1 CL0020
Cotton_A_21635_CDS 231 278 229 278 PF13041.6 PPR_2 Repeat 3 50 50 37.1 2.7e-09 1 CL0020
Cotton_A_21635_CDS 307 347 304 349 PF13812.6 PPR_3 Repeat 21 61 63 19.6 0.00072 1 CL0020
Cotton_A_21635_CDS 412 436 408 437 PF01535.20 PPR Family 6 30 31 14.2 0.038 1 CL0020
Cotton_A_21635_CDS 443 472 442 472 PF01535.20 PPR Family 2 31 31 13.0 0.094 1 CL0020
Cotton_A_06342_CDS 200 356 200 358 PF01764.25 Lipase_3 Family 1 140 142 126.7 6e-37 1 CL0028
Cotton_A_09503_CDS 45 96 45 96 PF02229.16 PC4 Domain 1 52 52 91.3 2.1e-26 1 CL0609
Cotton_A_28899_CDS 211 477 207 478 PF07714.17 Pkinase_Tyr Domain 6 258 259 178.2 1.8e-52 1 CL0016
Cotton_A_14943_CDS 171 200 170 200 PF01535.20 PPR Family 2 31 31 11.2 0.36 1 CL0020
Cotton_A_14943_CDS 206 235 205 235 PF01535.20 PPR Family 2 31 31 19.8 0.00062 1 CL0020
Cotton_A_14943_CDS 330 373 328 376 PF13041.6 PPR_2 Repeat 4 47 50 45.4 6.5e-12 1 CL0020
Cotton_A_14943_CDS 397 445 397 446 PF13041.6 PPR_2 Repeat 1 49 50 31.7 1.3e-07 1 CL0020
Cotton_A_14943_CDS 508 526 506 528 PF01535.20 PPR Family 5 23 31 9.4 1.3 1 CL0020
Cotton_A_14943_CDS 552 657 537 661 PF17177.4 PPR_long Domain 68 173 212 50.5 1.6e-13 1 CL0020
Cotton_A_14943_CDS 682 707 680 709 PF01535.20 PPR Family 3 28 31 12.9 0.098 1 CL0020
Cotton_A_14943_CDS 717 744 715 745 PF01535.20 PPR Family 3 30 31 16.4 0.0076 1 CL0020
Cotton_A_14943_CDS 750 779 749 779 PF01535.20 PPR Family 2 31 31 16.2 0.009 1 CL0020
Cotton_A_14943_CDS 784 828 781 830 PF13041.6 PPR_2 Repeat 4 48 50 33.0 4.9e-08 1 CL0020
Cotton_A_14943_CDS 887 927 885 930 PF13041.6 PPR_2 Repeat 4 44 50 40.5 2.3e-10 1 CL0020
Cotton_A_04485_CDS 31 78 28 79 PF00847.20 AP2 Domain 4 53 54 40.5 2.4e-10 1 CL0081
Cotton_A_10407_CDS 91 304 90 305 PF17177.4 PPR_long Domain 2 211 212 263.9 8e-79 1 CL0020
Cotton_A_10407_CDS 345 567 345 567 PF16953.5 PRORP Domain 1 241 241 239.4 3.9e-71 1 CL0280
Cotton_A_01994_CDS 69 148 68 149 PF03366.16 YEATS Family 2 80 81 104.5 2.1e-30 1 CL0154
Cotton_A_04612_CDS 22 148 22 148 PF02365.15 NAM Family 1 126 126 134.1 4.8e-39 1 No_clan
Cotton_A_02971_CDS 367 413 364 413 PF00010.26 HLH Domain 4 53 53 50.4 1.6e-13 1 No_clan
Cotton_A_10612_CDS 127 217 122 227 PF01624.20 MutS_I Domain 8 100 113 39.2 6.7e-10 1 No_clan
Cotton_A_10612_CDS 797 979 796 982 PF00488.21 MutS_V Domain 2 185 188 137.6 4.6e-40 1 CL0023
Cotton_A_10612_CDS 1070 1107 1069 1135 PF01541.24 GIY-YIG Domain 2 40 78 24.1 3.3e-05 1 CL0418
Cotton_A_21121_CDS 65 162 65 169 PF12796.7 Ank_2 Repeat 1 76 83 28.5 1.7e-06 1 CL0465
Cotton_A_21121_CDS 255 275 255 276 PF18044.1 zf-CCCH_4 Domain 1 21 22 29.4 4.8e-07 1 CL0537
Cotton_A_02231_CDS 73 252 72 254 PF03018.14 Dirigent Family 3 146 148 113.0 9.9e-33 1 CL0650
Cotton_A_20520_CDS 204 356 203 356 PF02182.17 SAD_SRA Domain 2 157 157 166.1 4.6e-49 1 CL0178
Cotton_A_20520_CDS 385 483 384 483 PF05033.16 Pre-SET Family 2 109 109 72.3 4.6e-20 1 No_clan
Cotton_A_20520_CDS 502 636 502 636 PF00856.28 SET Family 1 169 169 80.7 1.5e-22 1 No_clan
Cotton_A_12832_CDS 32 155 30 155 PF04852.12 DUF640 Family 3 126 126 221.2 3.3e-66 1 No_clan
Cotton_A_33004_CDS 75 438 73 438 PF00155.21 Aminotran_1_2 Domain 3 363 363 114.4 6.7e-33 1 CL0061
Cotton_A_36810_CDS 63 88 62 89 PF01239.22 PPTA Repeat 2 27 28 30.7 1.7e-07 1 CL0020
Cotton_A_36810_CDS 97 124 97 124 PF01239.22 PPTA Repeat 1 28 28 38.8 4.8e-10 1 CL0020
Cotton_A_36810_CDS 133 159 133 160 PF01239.22 PPTA Repeat 1 27 28 44.9 5.9e-12 1 CL0020
Cotton_A_36810_CDS 167 193 167 194 PF01239.22 PPTA Repeat 1 27 28 30.2 2.5e-07 1 CL0020
Cotton_A_02955_CDS 92 206 88 208 PF07714.17 Pkinase_Tyr Domain 5 122 259 75.7 3.3e-21 1 CL0016
Cotton_A_27820_CDS 65 202 65 206 PF02018.17 CBM_4_9 Domain 1 133 138 51.7 1.1e-13 1 CL0202
Cotton_A_27820_CDS 237 379 236 381 PF02018.17 CBM_4_9 Domain 2 136 138 64.1 1.6e-17 1 CL0202
Cotton_A_27820_CDS 437 695 433 709 PF00331.20 Glyco_hydro_10 Family 6 281 316 162.7 1.1e-47 1 CL0058
Cotton_A_22449_CDS 136 192 136 204 PF11708.8 Slu7 Domain 1 57 269 47.9 1.4e-12 1 No_clan
Cotton_A_07186_CDS 283 320 281 324 PF13920.6 zf-C3HC4_3 Domain 4 45 50 29.9 3.8e-07 1 CL0229
Cotton_A_24424_CDS 190 310 160 323 PF04622.12 ERG2_Sigma1R Family 51 169 209 21.4 0.00013 1 CL0029
Cotton_A_30051_CDS 159 201 159 202 PF06203.14 CCT Motif 1 43 44 67.2 9.3e-19 1 CL0281
Cotton_A_25538_CDS 9 71 8 72 PF01423.22 LSM Domain 2 66 67 77.8 3.7e-22 1 CL0527
Cotton_A_08586_CDS 12 106 2 106 PF02519.14 Auxin_inducible Family 8 90 90 85.8 1.7e-24 1 No_clan
Cotton_A_06107_CDS 120 220 120 222 PF02362.21 B3 Family 1 99 101 75.2 3e-21 1 CL0405
Cotton_A_06107_CDS 276 359 276 359 PF06507.13 Auxin_resp Family 1 83 83 110.3 4e-32 1 No_clan
Cotton_A_00580_CDS 213 273 211 274 PF00170.21 bZIP_1 Family 3 63 64 50.5 1.6e-13 1 CL0018
Cotton_A_14274_CDS 85 592 85 592 PF03141.16 Methyltransf_29 Family 1 506 506 697.3 1.1e-209 1 CL0063
Cotton_A_23130_CDS 33 152 33 153 PF01597.19 GCV_H Domain 1 121 122 166.3 2.4e-49 1 CL0105
Cotton_A_16904_CDS 4 153 2 154 PF04535.12 DUF588 Domain 3 149 150 125.4 1.6e-36 1 CL0396
Cotton_A_36318_CDS 127 486 118 487 PF08737.10 Rgp1 Family 108 416 417 62.3 4.7e-17 1 No_clan
Cotton_A_01475_CDS 20 276 19 280 PF13621.6 Cupin_8 Domain 2 249 254 86.6 2.2e-24 1 CL0029
Cotton_A_23648_CDS 50 75 49 75 PF00642.24 zf-CCCH Family 2 27 27 33.4 2.8e-08 1 CL0537
Cotton_A_23648_CDS 95 120 94 120 PF00642.24 zf-CCCH Family 2 27 27 40.2 2.2e-10 1 CL0537
Cotton_A_23648_CDS 141 166 140 166 PF00642.24 zf-CCCH Family 2 27 27 38.1 9.5e-10 1 CL0537
Cotton_A_23648_CDS 298 323 297 323 PF00642.24 zf-CCCH Family 2 27 27 35.7 5.6e-09 1 CL0537
Cotton_A_23648_CDS 344 368 343 369 PF00642.24 zf-CCCH Family 2 26 27 36.7 2.8e-09 1 CL0537
Cotton_A_05871_CDS 9 80 9 81 PF00173.28 Cyt-b5 Domain 1 73 74 91.2 3.5e-26 1 No_clan
Cotton_A_15150_CDS 86 170 64 180 PF03018.14 Dirigent Family 21 107 148 67.8 8.5e-19 1 CL0650
Cotton_A_01149_CDS 142 310 142 311 PF14543.6 TAXi_N Domain 1 177 178 180.6 3.2e-53 1 CL0129
Cotton_A_01149_CDS 333 479 332 480 PF14541.6 TAXi_C Domain 2 160 161 95.9 2.1e-27 1 CL0129
Cotton_A_30027_CDS 10 81 10 85 PF04832.12 SOUL Family 1 68 168 69.4 4.1e-19 1 CL0319
Cotton_A_30027_CDS 86 198 82 199 PF04832.12 SOUL Family 54 167 168 117.1 9e-34 1 CL0319
Cotton_A_13901_CDS 56 106 56 107 PF00847.20 AP2 Domain 1 53 54 32.8 6.2e-08 1 CL0081
Cotton_A_38596_CDS 40 486 39 496 PF00067.22 p450 Domain 2 452 463 336.5 2.4e-100 1 No_clan
Cotton_A_09433_CDS 13 65 12 66 PF00584.20 SecE Family 2 54 55 51.4 7.6e-14 1 No_clan
Cotton_A_20342_CDS 259 659 256 659 PF02181.23 FH2 Family 10 372 372 317.0 1.7e-94 1 No_clan
Cotton_A_02743_CDS 50 104 50 104 PF17284.2 Spermine_synt_N Domain 1 53 53 68.3 3.8e-19 1 No_clan
Cotton_A_02743_CDS 107 278 107 301 PF01564.17 Spermine_synth Domain 1 172 188 186.0 4.3e-55 1 CL0063
Cotton_A_15852_CDS 101 283 101 283 PF03031.18 NIF Family 1 156 156 138.7 1.3e-40 1 CL0137
Cotton_A_32634_CDS 259 448 221 450 PF09746.9 Membralin Family 187 365 381 56.7 2.1e-15 1 No_clan
Cotton_A_40682_CDS 157 184 157 184 PF05678.14 VQ Motif 1 28 28 45.5 3.6e-12 1 No_clan
Cotton_A_40755_CDS 10 54 10 54 PF03107.16 C1_2 Domain 1 47 47 43.1 3.8e-11 1 CL0006
Cotton_A_39478_CDS 74 161 73 164 PF12796.7 Ank_2 Repeat 1 79 83 41.0 2.2e-10 1 CL0465
Cotton_A_39478_CDS 196 447 192 448 PF07714.17 Pkinase_Tyr Domain 16 258 259 171.0 2.8e-50 1 CL0016
Cotton_A_29787_CDS 162 405 160 407 PF00566.18 RabGAP-TBC Family 3 213 215 181.8 1.3e-53 1 No_clan
Cotton_A_15767_CDS 10 124 10 128 PF00072.24 Response_reg Domain 1 107 112 77.0 1.2e-21 1 CL0304
Cotton_A_22971_CDS 106 279 106 290 PF08245.12 Mur_ligase_M Domain 1 132 192 29.8 5.4e-07 1 No_clan
Cotton_A_07059_CDS 153 587 153 589 PF03164.14 Mon1 Family 1 401 404 461.3 2.9e-138 1 No_clan
Cotton_A_21145_CDS 53 92 53 93 PF01476.20 LysM Domain 4 43 44 34.9 1.2e-08 1 CL0187
Cotton_A_11103_CDS 17 94 17 94 PF03386.14 ENOD93 Family 1 78 78 133.7 1.5e-39 1 No_clan
Cotton_A_00009_CDS 15 130 14 130 PF16457.5 PH_12 Domain 3 134 134 28.3 2.1e-06 1 CL0266
Cotton_A_00009_CDS 278 326 277 326 PF00415.18 RCC1 Repeat 2 50 50 36.0 8.2e-09 1 CL0186
Cotton_A_00009_CDS 330 380 329 381 PF00415.18 RCC1 Repeat 2 49 50 34.0 3.2e-08 1 CL0186
Cotton_A_00009_CDS 384 433 384 433 PF00415.18 RCC1 Repeat 1 50 50 48.5 9.8e-13 1 CL0186
Cotton_A_00009_CDS 449 495 448 495 PF00415.18 RCC1 Repeat 4 50 50 40.6 2.8e-10 1 CL0186
Cotton_A_00009_CDS 498 547 498 547 PF00415.18 RCC1 Repeat 1 50 50 27.7 3e-06 1 CL0186
Cotton_A_00009_CDS 552 599 551 599 PF00415.18 RCC1 Repeat 3 50 50 50.4 2.6e-13 1 CL0186
Cotton_A_00009_CDS 603 669 602 670 PF01363.21 FYVE Domain 2 67 68 47.7 1.2e-12 1 CL0390
Cotton_A_00009_CDS 856 890 855 891 PF13713.6 BRX_N Domain 2 36 37 44.7 8.3e-12 1 No_clan
Cotton_A_00009_CDS 952 1007 952 1007 PF08381.11 BRX Domain 1 56 56 84.7 2e-24 1 No_clan
Cotton_A_28021_CDS 154 176 154 176 PF18044.1 zf-CCCH_4 Domain 1 22 22 30.6 2.1e-07 1 CL0537
Cotton_A_28021_CDS 238 264 238 264 PF00642.24 zf-CCCH Family 1 27 27 33.1 3.8e-08 1 CL0537
Cotton_A_12378_CDS 82 167 82 167 PF00439.25 Bromodomain Domain 1 84 84 73.8 9e-21 1 No_clan
Cotton_A_24548_CDS 186 623 186 623 PF11904.8 GPCR_chapero_1 Domain 1 307 307 342.7 2.1e-102 1 No_clan
Cotton_A_06070_CDS 54 325 54 326 PF00149.28 Metallophos Domain 1 203 204 62.6 7.1e-17 1 CL0163
Cotton_A_27726_CDS 66 449 63 452 PF00999.21 Na_H_Exchanger Family 3 377 381 160.9 3.7e-47 1 CL0064
Cotton_A_32551_CDS 42 467 42 468 PF01532.20 Glyco_hydro_47 Domain 1 457 458 382.0 4.1e-114 1 CL0059
Cotton_A_30212_CDS 10 57 10 57 PF00319.18 SRF-TF Domain 1 48 48 88.5 1.4e-25 1 No_clan
Cotton_A_30212_CDS 85 172 81 173 PF01486.17 K-box Family 5 92 93 100.5 4.3e-29 1 No_clan
Cotton_A_34952_CDS 48 142 46 177 PF08240.12 ADH_N Domain 3 82 109 87.8 4.1e-25 1 CL0296
Cotton_A_34952_CDS 219 340 219 352 PF00107.26 ADH_zinc_N Family 1 118 130 64.8 7.5e-18 1 CL0063
Cotton_A_28757_CDS 89 134 89 134 PF13639.6 zf-RING_2 Domain 1 44 44 49.2 4.7e-13 1 CL0229
Cotton_A_05468_CDS 3 79 1 83 PF17652.1 Glyco_hydro81C Domain 230 300 349 55.5 5.2e-15 1 CL0059
Cotton_A_13161_CDS 44 95 41 112 PF02823.16 ATP-synt_DE_N Domain 8 58 80 42.6 4.1e-11 1 No_clan
Cotton_A_33726_CDS 7 121 7 164 PF12697.7 Abhydrolase_6 Domain 1 105 220 50.3 4.6e-13 1 CL0028
Cotton_A_01955_CDS 163 264 163 265 PF02362.21 B3 Family 1 100 101 74.8 3.8e-21 1 CL0405
Cotton_A_01955_CDS 289 371 289 371 PF06507.13 Auxin_resp Family 1 83 83 122.5 6.4e-36 1 No_clan
Cotton_A_01955_CDS 721 819 694 824 PF02309.16 AUX_IAA Family 113 231 237 47.9 1.5e-12 1 CL0072
Cotton_A_10387_CDS 32 82 31 97 PF00076.22 RRM_1 Domain 2 57 70 27.1 2.8e-06 1 CL0221
Cotton_A_10387_CDS 119 198 111 200 PF11835.8 RRM_8 Domain 8 87 89 72.8 2e-20 1 CL0221
Cotton_A_10387_CDS 256 354 241 363 PF13893.6 RRM_5 Domain 17 111 125 111.5 1.9e-32 1 CL0221
Cotton_A_10387_CDS 384 446 381 447 PF00076.22 RRM_1 Domain 4 69 70 32.9 4.2e-08 1 CL0221
Cotton_A_28966_CDS 25 152 25 303 PF00561.20 Abhydrolase_1 Domain 1 135 257 76.3 2.9e-21 1 CL0028
Cotton_A_12961_CDS 13 104 8 124 PF18052.1 Rx_N Domain 2 89 93 80.4 8.6e-23 1 No_clan
Cotton_A_12961_CDS 196 402 180 423 PF00931.22 NB-ARC Domain 14 222 252 171.0 2.6e-50 1 CL0023
Cotton_A_30308_CDS 77 329 75 329 PF07714.17 Pkinase_Tyr Domain 3 259 259 226.9 2.5e-67 1 CL0016
Cotton_A_04132_CDS 3 61 1 61 PF00076.22 RRM_1 Domain 12 70 70 35.6 5.9e-09 1 CL0221
Cotton_A_31500_CDS 21 273 21 275 PF00454.27 PI3_PI4_kinase Family 1 248 250 167.5 4.7e-49 1 CL0016
Cotton_A_21606_CDS 63 548 63 548 PF11744.8 ALMT Family 1 469 469 604.8 1.1e-181 1 CL0307
Cotton_A_36690_CDS 63 240 61 241 PF04755.12 PAP_fibrillin Family 3 197 198 147.3 5.2e-43 1 No_clan
Cotton_A_22321_CDS 56 159 54 159 PF04398.12 DUF538 Family 3 112 112 98.1 3.9e-28 1 No_clan
Cotton_A_20558_CDS 32 416 32 417 PF03140.15 DUF247 Family 1 396 397 363.3 1.8e-108 1 No_clan
Cotton_A_01665_CDS 229 257 224 258 PF00400.32 WD40 Repeat 10 37 38 21.8 0.00025 1 CL0186
Cotton_A_01665_CDS 262 298 262 299 PF00400.32 WD40 Repeat 1 37 38 20.2 0.00078 1 CL0186
Cotton_A_01665_CDS 323 346 309 347 PF00400.32 WD40 Repeat 14 37 38 14.1 0.067 1 CL0186
Cotton_A_01665_CDS 357 388 349 388 PF00400.32 WD40 Repeat 6 38 38 16.3 0.013 1 CL0186
Cotton_A_01665_CDS 398 438 396 439 PF00400.32 WD40 Repeat 4 37 38 23.8 5.6e-05 1 CL0186
Cotton_A_01805_CDS 273 485 273 495 PF01513.21 NAD_kinase Family 1 226 292 142.4 1.6e-41 1 CL0240
Cotton_A_01805_CDS 513 577 509 588 PF01513.21 NAD_kinase Family 216 278 292 46.0 3.8e-12 1 CL0240
Cotton_A_21643_CDS 238 518 237 519 PF03016.15 Exostosin Family 2 299 300 200.5 3.3e-59 1 No_clan
Cotton_A_29505_CDS 139 357 137 357 PF05686.12 Glyco_transf_90 Family 3 221 396 341.7 5.4e-102 1 CL0113
Cotton_A_32492_CDS 5 117 1 118 PF00125.24 Histone Domain 16 130 131 81.0 9.2e-23 1 CL0012
Cotton_A_04347_CDS 53 100 53 100 PF03107.16 C1_2 Domain 1 47 47 28.1 1.9e-06 1 CL0006
Cotton_A_04347_CDS 169 214 168 214 PF03107.16 C1_2 Domain 2 47 47 30.9 2.5e-07 1 CL0006
Cotton_A_06269_CDS 32 459 31 461 PF00450.22 Peptidase_S10 Domain 2 417 419 330.5 2.1e-98 1 CL0028
Cotton_A_21870_CDS 25 189 25 190 PF14826.6 FACT-Spt16_Nlob Domain 1 160 161 169.6 4.6e-50 1 CL0356
Cotton_A_21870_CDS 206 435 204 437 PF00557.24 Peptidase_M24 Domain 3 207 209 105.9 2.2e-30 1 No_clan
Cotton_A_21870_CDS 553 707 553 707 PF08644.11 SPT16 Family 1 151 151 174.4 1.7e-51 1 CL0266
Cotton_A_21870_CDS 837 920 833 921 PF08512.12 Rtt106 Domain 5 88 89 59.2 4e-16 1 CL0266
Cotton_A_35030_CDS 5 45 4 47 PF00319.18 SRF-TF Domain 2 42 48 47.9 6.7e-13 1 No_clan
Cotton_A_34452_CDS 44 223 43 224 PF01121.20 CoaE Domain 2 178 179 196.3 3.3e-58 1 CL0023
Cotton_A_24499_CDS 37 76 37 77 PF00514.23 Arm Repeat 1 40 41 31.4 1.3e-07 1 CL0020
Cotton_A_24499_CDS 211 249 206 249 PF00514.23 Arm Repeat 6 41 41 26.0 6.5e-06 1 CL0020
Cotton_A_21805_CDS 20 107 11 107 PF00407.19 Bet_v_1 Domain 67 151 151 38.0 1.4e-09 1 CL0209
Cotton_A_20892_CDS 3 426 2 428 PF02458.15 Transferase Family 2 432 434 268.9 6.6e-80 1 CL0149
Cotton_A_30667_CDS 139 187 138 190 PF03109.16 ABC1 Family 2 50 119 57.0 2e-15 1 CL0016
Cotton_A_35694_CDS 34 209 33 210 PF04520.13 Senescence_reg Family 2 167 168 143.8 8.7e-42 1 No_clan
Cotton_A_15074_CDS 43 65 43 65 PF12515.8 CaATP_NAI Family 22 45 45 23.9 2.3e-05 1 No_clan
Cotton_A_15074_CDS 132 199 129 199 PF00690.26 Cation_ATPase_N Domain 4 69 69 45.4 4.8e-12 1 No_clan
Cotton_A_15074_CDS 252 451 247 453 PF00122.20 E1-E2_ATPase Family 6 178 181 122.5 1.3e-35 1 No_clan
Cotton_A_15074_CDS 461 730 460 730 PF00702.26 Hydrolase Domain 2 210 210 73.0 4e-20 1 CL0137
Cotton_A_15074_CDS 801 856 800 856 PF00689.21 Cation_ATPase_C Family 2 57 182 64.3 1.1e-17 1 No_clan
Cotton_A_15074_CDS 854 933 852 933 PF00689.21 Cation_ATPase_C Family 100 182 182 46.3 3.9e-12 1 No_clan
Cotton_A_01059_CDS 48 198 48 198 PF00005.27 ABC_tran Domain 1 137 137 79.5 3.3e-22 1 CL0023
Cotton_A_01059_CDS 362 571 361 573 PF01061.24 ABC2_membrane Family 2 208 210 111.5 3.5e-32 1 CL0181
Cotton_A_16986_CDS 26 344 26 344 PF05703.11 Auxin_canalis Family 1 256 256 345.9 1.8e-103 1 No_clan
Cotton_A_16986_CDS 382 486 382 488 PF08458.10 PH_2 Family 1 103 105 141.4 1.1e-41 1 CL0266
Cotton_A_01968_CDS 10 80 10 87 PF14226.6 DIOX_N Family 1 75 118 46.1 7e-12 1 CL0029
Cotton_A_01968_CDS 182 268 159 270 PF03171.20 2OG-FeII_Oxy Domain 12 99 101 73.6 1.4e-20 1 CL0029
Cotton_A_03899_CDS 84 285 84 291 PF00300.22 His_Phos_1 Domain 1 189 194 120.8 5.6e-35 1 CL0071
Cotton_A_26093_CDS 263 310 261 310 PF00010.26 HLH Domain 4 53 53 26.5 4.5e-06 1 No_clan
Cotton_A_40375_CDS 5 74 5 75 PF00025.21 Arf Domain 1 71 175 100.4 7.7e-29 1 CL0023
Cotton_A_28380_CDS 120 148 120 150 PF01535.20 PPR Family 1 29 31 14.3 0.035 1 CL0020
Cotton_A_28380_CDS 223 271 222 271 PF13041.6 PPR_2 Repeat 2 50 50 33.1 4.6e-08 1 CL0020
Cotton_A_28380_CDS 321 448 317 454 PF00248.21 Aldo_ket_red Domain 52 180 294 105.7 2.5e-30 1 No_clan
Cotton_A_12179_CDS 112 339 112 339 PF02485.21 Branch Family 1 247 247 256.5 2.5e-76 1 CL0110
Cotton_A_33721_CDS 3 55 2 55 PF08766.11 DEK_C Domain 2 54 54 56.1 2.5e-15 1 No_clan
Cotton_A_33721_CDS 129 198 126 198 PF02201.18 SWIB Domain 4 74 74 100.8 2.9e-29 1 No_clan
Cotton_A_33721_CDS 255 328 254 328 PF02201.18 SWIB Domain 2 74 74 91.4 2.5e-26 1 No_clan
Cotton_A_29526_CDS 4 428 2 428 PF02458.15 Transferase Family 3 432 434 271.4 1.1e-80 1 CL0149
Cotton_A_40666_CDS 27 93 27 96 PF11976.8 Rad60-SLD Family 1 68 72 49.5 2.9e-13 1 CL0072
Cotton_A_30221_CDS 46 112 46 113 PF00462.24 Glutaredoxin Domain 1 59 60 29.7 5.4e-07 1 CL0172
Cotton_A_39713_CDS 46 95 45 96 PF00847.20 AP2 Domain 2 53 54 51.6 8e-14 1 CL0081
Cotton_A_37836_CDS 29 318 29 327 PF00124.19 Photo_RC Family 1 256 260 250.2 1.9e-74 1 No_clan
Cotton_A_37836_CDS 351 786 351 792 PF00421.19 PSII Family 1 500 507 496.9 6.3e-149 1 No_clan
Cotton_A_37836_CDS 873 929 872 929 PF01737.17 Ycf9 Family 2 58 58 74.5 4.3e-21 1 No_clan
Cotton_A_35791_CDS 5 41 4 44 PF12937.7 F-box-like Domain 2 38 48 36.1 4.3e-09 1 CL0271
Cotton_A_35791_CDS 218 311 216 355 PF08268.12 FBA_3 Domain 3 93 128 32.7 5.9e-08 1 CL0162
Cotton_A_18158_CDS 46 352 44 352 PF00231.19 ATP-synt Domain 3 279 279 239.8 4.5e-71 1 No_clan
Cotton_A_11536_CDS 11 67 11 70 PF00076.22 RRM_1 Domain 1 56 70 63.9 9.1e-18 1 CL0221
Cotton_A_19293_CDS 4 67 4 67 PF00226.31 DnaJ Domain 1 63 63 79.2 1.8e-22 1 CL0392
Cotton_A_19293_CDS 111 269 111 269 PF01556.18 DnaJ_C Domain 1 148 148 144.6 2.2e-42 1 No_clan
Cotton_A_12523_CDS 4 131 1 136 PF05634.11 APO_RNA-bind Family 53 180 200 137.7 3e-40 1 No_clan
Cotton_A_12523_CDS 163 273 158 280 PF05634.11 APO_RNA-bind Family 70 180 200 69.1 3.2e-19 1 No_clan
Cotton_A_15705_CDS 49 99 48 100 PF14416.6 PMR5N Domain 2 52 53 72.0 3.5e-20 1 No_clan
Cotton_A_15705_CDS 101 371 101 371 PF13839.6 PC-Esterase Family 1 283 283 284.6 1.1e-84 1 CL0264
Cotton_A_31128_CDS 66 221 65 221 PF02453.17 Reticulon Family 2 157 157 195.4 5.5e-58 1 CL0484
Cotton_A_02688_CDS 28 64 26 65 PF08263.12 LRRNT_2 Family 4 40 41 44.5 1.4e-11 1 No_clan
Cotton_A_02688_CDS 118 175 117 177 PF13855.6 LRR_8 Repeat 2 59 61 34.8 9.9e-09 1 CL0022
Cotton_A_02688_CDS 317 583 315 585 PF00069.25 Pkinase Domain 3 260 264 162.6 1.1e-47 1 CL0016
Cotton_A_33080_CDS 132 295 132 297 PF01764.25 Lipase_3 Family 1 140 142 140.7 2.8e-41 1 CL0028
Cotton_A_15792_CDS 25 96 24 99 PF04667.17 Endosulfine Family 2 77 80 77.4 6.7e-22 1 No_clan
Cotton_A_16381_CDS 187 217 180 218 PF00400.32 WD40 Repeat 8 37 38 18.2 0.0034 1 CL0186
Cotton_A_16381_CDS 223 258 222 259 PF00400.32 WD40 Repeat 2 37 38 16.7 0.01 1 CL0186
Cotton_A_16381_CDS 320 351 315 351 PF00400.32 WD40 Repeat 6 38 38 13.7 0.088 1 CL0186
Cotton_A_16381_CDS 360 403 358 404 PF00400.32 WD40 Repeat 3 37 38 17.0 0.0082 1 CL0186
Cotton_A_20185_CDS 1 73 1 73 PF03030.16 H_PPase Family 559 650 650 38.2 7e-10 1 No_clan
Cotton_A_26022_CDS 31 97 19 97 PF01565.23 FAD_binding_4 Domain 53 120 139 44.6 1.1e-11 1 CL0077
Cotton_A_10284_CDS 14 118 10 119 PF03732.17 Retrotrans_gag Family 14 95 96 27.4 3e-06 1 CL0523
Cotton_A_14731_CDS 112 377 109 379 PF00494.19 SQS_PSY Domain 4 261 263 232.2 7.2e-69 1 CL0613
Cotton_A_03567_CDS 7 74 6 74 PF06522.11 B12D Family 2 69 69 87.2 4.5e-25 1 No_clan
Cotton_A_05512_CDS 108 251 108 252 PF07200.13 Mod_r Domain 1 143 146 111.0 5e-32 1 CL0596
Cotton_A_00177_CDS 102 124 102 124 PF00560.33 LRR_1 Repeat 1 23 23 14.0 0.058 1 CL0022
Cotton_A_00177_CDS 125 185 125 185 PF13855.6 LRR_8 Repeat 1 61 61 43.2 2.5e-11 1 CL0022
Cotton_A_00177_CDS 195 254 193 259 PF13855.6 LRR_8 Repeat 2 60 61 30.9 1.6e-07 1 CL0022
Cotton_A_00177_CDS 317 336 317 338 PF00560.33 LRR_1 Repeat 1 20 23 10.1 1.1 1 CL0022
Cotton_A_25753_CDS 186 241 185 241 PF03106.15 WRKY Domain 2 59 59 61.2 8.3e-17 1 CL0274
Cotton_A_25753_CDS 367 423 366 423 PF03106.15 WRKY Domain 2 59 59 82.6 1.7e-23 1 CL0274
Cotton_A_10554_CDS 74 172 68 174 PF01429.19 MBD Domain 7 75 77 57.2 1e-15 1 CL0081
Cotton_A_10828_CDS 59 165 57 167 PF00651.31 BTB Domain 3 109 111 46.2 4.4e-12 1 CL0033
Cotton_A_10828_CDS 252 336 250 336 PF02135.16 zf-TAZ Family 3 75 75 46.6 3.6e-12 1 No_clan
Cotton_A_35708_CDS 97 296 94 333 PF00685.27 Sulfotransfer_1 Domain 6 199 267 29.7 4.4e-07 1 CL0023
Cotton_A_14404_CDS 5 59 4 59 PF08766.11 DEK_C Domain 2 54 54 48.2 7.4e-13 1 No_clan
Cotton_A_14404_CDS 100 150 100 151 PF02229.16 PC4 Domain 1 51 52 53.5 1.4e-14 1 CL0609
Cotton_A_14404_CDS 250 385 250 387 PF14223.6 Retrotran_gag_2 Family 1 136 138 62.5 3.2e-17 1 CL0523
Cotton_A_26610_CDS 56 130 56 149 PF08241.12 Methyltransf_11 Domain 1 78 96 32.5 1e-07 1 CL0063
Cotton_A_26610_CDS 194 281 194 281 PF12589.8 WBS_methylT Family 1 82 82 84.0 9.5e-24 1 No_clan
Cotton_A_14345_CDS 27 224 3 225 PF03140.15 DUF247 Family 186 396 397 153.4 1e-44 1 No_clan
Cotton_A_03430_CDS 87 325 66 330 PF00481.21 PP2C Family 30 251 258 149.8 1.1e-43 1 CL0238
Cotton_A_02482_CDS 107 140 104 140 PF00400.32 WD40 Repeat 4 38 38 20.3 0.00071 1 CL0186
Cotton_A_02482_CDS 150 182 144 182 PF00400.32 WD40 Repeat 7 37 38 17.3 0.0067 1 CL0186
Cotton_A_02482_CDS 371 413 359 413 PF00400.32 WD40 Repeat 13 38 38 14.0 0.07 1 CL0186
Cotton_A_02482_CDS 686 716 678 716 PF00400.32 WD40 Repeat 9 38 38 15.0 0.034 1 CL0186
Cotton_A_25188_CDS 6 42 6 42 PF12734.7 CYSTM Family 1 42 42 44.7 1.2e-11 1 No_clan
Cotton_A_12033_CDS 158 201 157 201 PF13639.6 zf-RING_2 Domain 2 44 44 46.1 4.4e-12 1 CL0229
Cotton_A_34531_CDS 8 95 7 114 PF00168.30 C2 Domain 2 86 103 41.2 1.5e-10 1 CL0154
Cotton_A_29718_CDS 95 135 86 147 PF05617.11 Prolamin_like Domain 9 49 71 23.8 3.8e-05 1 CL0482
Cotton_A_29718_CDS 473 542 473 543 PF04542.14 Sigma70_r2 Domain 1 70 71 67.7 5.6e-19 1 CL0123
Cotton_A_29718_CDS 552 610 552 614 PF04539.16 Sigma70_r3 Family 1 59 78 45.4 6.4e-12 1 CL0123
Cotton_A_29718_CDS 659 711 659 712 PF04545.16 Sigma70_r4 Domain 1 49 50 65.0 3.1e-18 1 CL0123
Cotton_A_33498_CDS 126 152 125 154 PF01535.20 PPR Family 2 28 31 13.7 0.055 1 CL0020
Cotton_A_33498_CDS 444 489 442 490 PF13812.6 PPR_3 Repeat 17 62 63 25.0 1.4e-05 1 CL0020
Cotton_A_33498_CDS 566 609 564 610 PF13041.6 PPR_2 Repeat 5 48 50 38.5 1e-09 1 CL0020
Cotton_A_33498_CDS 621 676 620 677 PF13812.6 PPR_3 Repeat 2 62 63 20.7 0.00032 1 CL0020
Cotton_A_03184_CDS 170 235 169 237 PF01363.21 FYVE Domain 2 66 68 66.2 2.1e-18 1 CL0390
Cotton_A_03184_CDS 352 476 351 478 PF04366.12 Ysc84 Family 2 126 128 117.5 3.1e-34 1 No_clan
Cotton_A_24529_CDS 9 53 6 53 PF03107.16 C1_2 Domain 4 47 47 33.5 3.8e-08 1 CL0006
Cotton_A_24529_CDS 64 112 64 112 PF03107.16 C1_2 Domain 1 47 47 52.4 4.9e-14 1 CL0006
Cotton_A_24529_CDS 126 175 125 175 PF03107.16 C1_2 Domain 2 47 47 34.9 1.4e-08 1 CL0006
Cotton_A_24529_CDS 243 285 242 285 PF03107.16 C1_2 Domain 2 47 47 32.3 9.2e-08 1 CL0006
Cotton_A_24529_CDS 398 444 397 444 PF03107.16 C1_2 Domain 2 47 47 36.8 3.6e-09 1 CL0006
Cotton_A_24529_CDS 454 501 453 501 PF03107.16 C1_2 Domain 2 47 47 37.8 1.7e-09 1 CL0006
Cotton_A_24529_CDS 510 556 510 556 PF03107.16 C1_2 Domain 1 47 47 36.1 6.1e-09 1 CL0006
Cotton_A_24529_CDS 566 614 564 614 PF03107.16 C1_2 Domain 3 47 47 27.2 3.7e-06 1 CL0006
Cotton_A_18842_CDS 101 376 98 376 PF00481.21 PP2C Family 5 258 258 208.3 1.5e-61 1 CL0238
Cotton_A_26313_CDS 102 179 100 179 PF18290.1 Nudix_hydro Domain 3 80 80 108.8 9.8e-32 1 No_clan
Cotton_A_26313_CDS 192 304 191 317 PF00293.28 NUDIX Domain 2 115 131 61.6 7.3e-17 1 CL0261
Cotton_A_33573_CDS 57 219 56 223 PF00117.28 GATase Domain 2 163 190 124.0 6.2e-36 1 CL0014
Cotton_A_22964_CDS 54 138 47 138 PF00254.28 FKBP_C Domain 10 94 94 97.6 3.9e-28 1 CL0487
Cotton_A_04340_CDS 89 161 75 174 PF01453.24 B_lectin Domain 16 92 105 39.2 7.9e-10 1 No_clan
Cotton_A_07456_CDS 198 332 195 337 PF02631.16 RecX Family 4 118 122 106.1 1.6e-30 1 No_clan
Cotton_A_04846_CDS 357 490 357 491 PF00630.19 Filamin Domain 1 102 103 54.0 2.4e-14 1 CL0159
Cotton_A_04846_CDS 546 594 493 594 PF00630.19 Filamin Domain 60 103 103 46.0 7.4e-12 1 CL0159
Cotton_A_00754_CDS 97 318 73 320 PF01571.21 GCV_T Domain 27 254 257 106.3 1.6e-30 1 CL0289
Cotton_A_22113_CDS 69 117 69 118 PF13041.6 PPR_2 Repeat 1 49 50 55.5 4.9e-15 1 CL0020
Cotton_A_22113_CDS 139 188 139 188 PF13041.6 PPR_2 Repeat 1 50 50 54.2 1.2e-14 1 CL0020
Cotton_A_22113_CDS 217 257 216 258 PF13041.6 PPR_2 Repeat 9 49 50 32.3 8.1e-08 1 CL0020
Cotton_A_31858_CDS 8 75 8 75 PF00076.22 RRM_1 Domain 1 70 70 65.4 3e-18 1 CL0221
Cotton_A_31858_CDS 110 172 110 176 PF00076.22 RRM_1 Domain 1 66 70 41.2 1.1e-10 1 CL0221
Cotton_A_01975_CDS 7 88 4 89 PF00564.24 PB1 Domain 4 83 84 34.9 1.1e-08 1 CL0072
Cotton_A_01975_CDS 369 404 368 411 PF00569.17 ZZ Domain 2 37 45 36.5 3.1e-09 1 CL0006
Cotton_A_01975_CDS 462 563 462 563 PF16158.5 N_BRCA1_IG Domain 1 102 102 96.1 1.7e-27 1 CL0159
Cotton_A_22610_CDS 100 158 100 160 PF13855.6 LRR_8 Repeat 1 59 61 27.4 2.1e-06 1 CL0022
Cotton_A_22610_CDS 198 219 198 220 PF00560.33 LRR_1 Repeat 1 22 23 10.8 0.61 1 CL0022
Cotton_A_40126_CDS 161 210 160 211 PF00847.20 AP2 Domain 2 53 54 51.9 6.7e-14 1 CL0081
Cotton_A_33932_CDS 182 330 182 330 PF01590.26 GAF Domain 1 133 133 41.7 1.7e-10 1 CL0161
Cotton_A_33932_CDS 639 748 639 753 PF00072.24 Response_reg Domain 1 107 112 68.0 7e-19 1 CL0304
Cotton_A_26336_CDS 14 88 12 113 PF00855.17 PWWP Domain 5 77 96 31.8 1.4e-07 1 CL0049
Cotton_A_02500_CDS 15 63 14 65 PF00249.31 Myb_DNA-binding Domain 2 44 46 33.2 4.4e-08 1 CL0123
Cotton_A_02500_CDS 101 141 100 147 PF14379.6 Myb_CC_LHEQLE Family 2 41 48 33.4 2.6e-08 1 No_clan
Cotton_A_22700_CDS 15 139 15 139 PF02365.15 NAM Family 1 126 126 90.0 2.1e-25 1 No_clan
Cotton_A_24044_CDS 23 164 22 164 PF04520.13 Senescence_reg Family 2 168 168 137.2 9.7e-40 1 No_clan
Cotton_A_07058_CDS 12 70 3 70 PF03946.14 Ribosomal_L11_N Domain 7 65 65 74.7 3.7e-21 1 No_clan
Cotton_A_07058_CDS 75 144 74 144 PF00298.19 Ribosomal_L11 Domain 2 70 70 65.2 5.6e-18 1 No_clan
Cotton_A_07712_CDS 223 280 217 281 PF13499.6 EF-hand_7 Domain 7 70 71 37.4 2.6e-09 1 CL0220
Cotton_A_21366_CDS 161 392 155 393 PF00931.22 NB-ARC Domain 7 251 252 140.5 5.4e-41 1 CL0023
Cotton_A_18543_CDS 129 343 129 343 PF02096.20 60KD_IMP Family 1 166 166 181.6 1e-53 1 CL0376
Cotton_A_19851_CDS 14 86 2 87 PF00078.27 RVT_1 Family 59 132 222 32.6 5.7e-08 1 CL0027
Cotton_A_11100_CDS 86 312 86 313 PF01177.22 Asp_Glu_race Family 1 223 224 107.9 6.6e-31 1 CL0399
Cotton_A_02793_CDS 75 204 73 205 PF00134.23 Cyclin_N Domain 3 126 127 106.6 7.1e-31 1 CL0065
Cotton_A_02793_CDS 207 303 207 315 PF02984.19 Cyclin_C Domain 1 91 119 46.8 2.8e-12 1 CL0065
Cotton_A_23288_CDS 33 117 31 129 PF04043.15 PMEI Domain 5 94 154 26.7 5.7e-06 1 No_clan
Cotton_A_21189_CDS 1 59 1 59 PF04783.12 DUF630 Family 1 59 59 87.8 4e-25 1 No_clan
Cotton_A_21189_CDS 376 680 376 681 PF04782.12 DUF632 Family 1 309 310 325.2 4.1e-97 1 No_clan
Cotton_A_23086_CDS 26 145 24 146 PF01417.20 ENTH Domain 4 124 125 151.7 9.3e-45 1 CL0009
Cotton_A_21373_CDS 141 375 138 376 PF00931.22 NB-ARC Domain 4 251 252 141.6 2.5e-41 1 CL0023
Cotton_A_05177_CDS 26 72 24 73 PF01084.20 Ribosomal_S18 Family 3 49 52 63.9 1.1e-17 1 CL0123
Cotton_A_32589_CDS 109 190 97 193 PF13091.6 PLDc_2 Domain 25 107 133 30.0 3.9e-07 1 CL0479
Cotton_A_32620_CDS 1 108 1 109 PF00665.26 rve Domain 10 118 119 44.6 1.4e-11 1 CL0219
Cotton_A_00994_CDS 1 167 1 169 PF02458.15 Transferase Family 261 432 434 101.8 3.3e-29 1 CL0149
Cotton_A_07571_CDS 84 268 84 269 PF03770.16 IPK Family 1 196 197 153.5 6.2e-45 1 CL0016
Cotton_A_14952_CDS 98 125 97 125 PF01535.20 PPR Family 4 31 31 10.0 0.85 1 CL0020
Cotton_A_14952_CDS 202 229 199 229 PF01535.20 PPR Family 4 31 31 12.1 0.19 1 CL0020
Cotton_A_14952_CDS 231 278 231 280 PF13041.6 PPR_2 Repeat 1 48 50 43.3 3e-11 1 CL0020
Cotton_A_14952_CDS 291 345 289 348 PF13812.6 PPR_3 Repeat 3 57 63 42.7 4.2e-11 1 CL0020
Cotton_A_07524_CDS 109 135 108 138 PF01535.20 PPR Family 2 28 31 12.6 0.13 1 CL0020
Cotton_A_07524_CDS 179 208 178 208 PF01535.20 PPR Family 2 31 31 20.8 0.00031 1 CL0020
Cotton_A_07524_CDS 212 239 212 241 PF01535.20 PPR Family 1 28 31 18.1 0.0022 1 CL0020
Cotton_A_07524_CDS 311 359 311 360 PF13041.6 PPR_2 Repeat 1 49 50 48.5 7.1e-13 1 CL0020
Cotton_A_26335_CDS 44 152 11 166 PF00067.22 p450 Domain 53 163 463 38.9 4.4e-10 1 No_clan
Cotton_A_23301_CDS 325 591 323 592 PF00664.23 ABC_membrane Family 3 273 274 95.2 5.3e-27 1 CL0241
Cotton_A_23301_CDS 656 789 656 791 PF00005.27 ABC_tran Domain 1 135 137 76.9 2.1e-21 1 CL0023
Cotton_A_23301_CDS 978 1190 945 1217 PF00664.23 ABC_membrane Family 38 250 274 99.4 2.6e-28 1 CL0241
Cotton_A_23301_CDS 1279 1427 1279 1427 PF00005.27 ABC_tran Domain 1 137 137 100.4 1.1e-28 1 CL0023
Cotton_A_21092_CDS 45 449 44 451 PF01490.18 Aa_trans Family 2 407 409 196.9 4.6e-58 1 CL0062
Cotton_A_00980_CDS 17 56 12 56 PF00505.19 HMG_box Domain 30 69 69 37.1 3.2e-09 1 CL0114
Cotton_A_23185_CDS 160 259 154 261 PF00651.31 BTB Domain 9 108 111 54.9 8.8e-15 1 CL0033
Cotton_A_23185_CDS 285 377 278 379 PF07707.15 BACK Domain 14 101 103 35.9 6.4e-09 1 CL0033
Cotton_A_30877_CDS 1 198 1 200 PF00069.25 Pkinase Domain 80 260 264 95.9 2.5e-27 1 CL0016
Cotton_A_23371_CDS 50 119 49 120 PF07983.13 X8 Domain 2 75 76 66.9 2e-18 1 No_clan
Cotton_A_28512_CDS 1 46 1 47 PF00124.19 Photo_RC Family 82 127 260 56.6 2.3e-15 1 No_clan
Cotton_A_28512_CDS 45 159 45 160 PF00124.19 Photo_RC Family 157 251 260 77.1 1.2e-21 1 No_clan
Cotton_A_38127_CDS 96 224 96 224 PF04979.14 IPP-2 Family 1 133 133 96.7 1.7e-27 1 No_clan
Cotton_A_22224_CDS 44 284 44 284 PF00141.23 peroxidase Domain 1 229 229 264.9 6.4e-79 1 CL0617
Cotton_A_08366_CDS 45 157 45 159 PF00069.25 Pkinase Domain 1 110 264 74.3 9.4e-21 1 CL0016
Cotton_A_18975_CDS 6 287 5 287 PF12767.7 SAGA-Tad1 Family 2 235 235 179.8 7.1e-53 1 No_clan
Cotton_A_36156_CDS 28 171 26 171 PF10604.9 Polyketide_cyc2 Family 3 143 143 78.8 4.8e-22 1 CL0209
Cotton_A_22818_CDS 1 115 1 122 PF00009.27 GTP_EFTU Domain 87 181 194 42.0 6.9e-11 1 CL0023
Cotton_A_09811_CDS 22 164 21 164 PF00056.23 Ldh_1_N Family 2 141 141 160.8 2e-47 1 CL0063
Cotton_A_09811_CDS 166 330 166 330 PF02866.18 Ldh_1_C Domain 1 167 167 167.0 3.4e-49 1 CL0341
Cotton_A_16018_CDS 61 115 60 115 PF02045.15 CBFB_NFYA Family 2 56 56 74.2 9.5e-21 1 No_clan
Cotton_A_32865_CDS 69 355 68 359 PF00067.22 p450 Domain 2 292 463 111.7 3.7e-32 1 No_clan
Cotton_A_29167_CDS 17 208 16 209 PF01813.17 ATP-synt_D Family 2 195 196 241.5 6.3e-72 1 No_clan
Cotton_A_15509_CDS 7 454 5 459 PF02458.15 Transferase Family 3 426 434 169.5 9.4e-50 1 CL0149
Cotton_A_22199_CDS 3 126 1 136 PF00445.18 Ribonuclease_T2 Domain 13 118 182 66.1 4.7e-18 1 No_clan
Cotton_A_12149_CDS 156 400 154 400 PF00931.22 NB-ARC Domain 3 252 252 194.8 1.3e-57 1 CL0023
Cotton_A_12149_CDS 558 612 558 614 PF13855.6 LRR_8 Repeat 3 58 61 27.8 1.5e-06 1 CL0022
Cotton_A_01886_CDS 583 687 580 687 PF07839.11 CaM_binding Domain 4 117 117 114.7 3.9e-33 1 No_clan
Cotton_A_01886_CDS 1101 1200 1093 1200 PF07839.11 CaM_binding Domain 10 117 117 119.0 1.7e-34 1 No_clan
Cotton_A_07895_CDS 49 504 49 504 PF11744.8 ALMT Family 1 469 469 607.4 1.8e-182 1 CL0307
Cotton_A_19351_CDS 23 61 19 61 PF00505.19 HMG_box Domain 31 69 69 34.7 1.8e-08 1 CL0114
Cotton_A_19351_CDS 74 112 73 113 PF08263.12 LRRNT_2 Family 2 40 41 36.5 4.4e-09 1 No_clan
Cotton_A_24685_CDS 226 543 226 543 PF01501.20 Glyco_transf_8 Family 1 256 256 308.7 3.3e-92 1 CL0110
Cotton_A_24740_CDS 108 583 94 589 PF00022.19 Actin Family 22 399 407 86.7 1.2e-24 1 CL0108
Cotton_A_09403_CDS 109 128 108 128 PF00612.27 IQ Motif 2 21 21 25.5 6.4e-06 1 CL0220
Cotton_A_09403_CDS 134 148 131 149 PF00612.27 IQ Motif 5 19 21 18.5 0.0011 1 CL0220
Cotton_A_09403_CDS 303 371 263 390 PF13178.6 DUF4005 Family 17 70 93 55.5 7e-15 1 No_clan
Cotton_A_19566_CDS 11 227 10 232 PF07224.11 Chlorophyllase Family 2 216 307 274.4 9.5e-82 1 CL0028
Cotton_A_01949_CDS 168 215 166 215 PF00010.26 HLH Domain 4 53 53 29.8 4.2e-07 1 No_clan
Cotton_A_17572_CDS 1 102 1 107 PF00112.23 Peptidase_C1 Domain 71 175 218 80.2 2.3e-22 1 CL0125
Cotton_A_20363_CDS 3 280 1 282 PF00520.31 Ion_trans Family 33 243 245 105.4 2.7e-30 1 CL0030
Cotton_A_20363_CDS 374 464 371 469 PF00027.29 cNMP_binding Domain 4 84 89 34.6 1.5e-08 1 CL0029
Cotton_A_08514_CDS 139 223 126 223 PF01477.23 PLAT Domain 27 117 117 44.0 2.7e-11 1 CL0321
Cotton_A_08514_CDS 236 902 236 902 PF00305.19 Lipoxygenase Domain 1 674 674 1038.1 0 1 No_clan
Cotton_A_24600_CDS 84 190 64 206 PF09405.10 Btz Domain 23 113 130 22.2 0.00013 1 No_clan
Cotton_A_12072_CDS 114 534 113 535 PF00854.21 PTR2 Family 2 394 395 303.4 2.2e-90 1 CL0015
Cotton_A_28336_CDS 453 495 453 497 PF11331.8 zinc_ribbon_12 Family 1 43 45 70.6 6.9e-20 1 CL0167
Cotton_A_30083_CDS 843 891 842 892 PF13920.6 zf-C3HC4_3 Domain 2 49 50 41.2 1.1e-10 1 CL0229
Cotton_A_03508_CDS 2 71 1 71 PF00504.21 Chloroa_b-bind Family 81 158 161 60.3 3.2e-16 1 No_clan
Cotton_A_07520_CDS 122 352 75 363 PF05055.12 DUF677 Family 62 305 336 53.2 2.1e-14 1 CL0133
Cotton_A_11667_CDS 164 218 164 218 PF13867.6 SAP30_Sin3_bdg Family 1 54 54 62.9 2.6e-17 1 No_clan
Cotton_A_09391_CDS 3 141 2 143 PF01217.20 Clat_adaptor_s Domain 2 140 142 155.1 1.1e-45 1 CL0212
Cotton_A_37186_CDS 7 98 2 98 PF10536.9 PMD Domain 98 182 363 49.9 2.4e-13 1 No_clan
Cotton_A_40133_CDS 19 83 19 84 PF01918.21 Alba Family 1 66 67 66.5 1.4e-18 1 CL0441
Cotton_A_29955_CDS 84 191 84 194 PF00072.24 Response_reg Domain 1 109 112 60.1 2.1e-16 1 CL0304
Cotton_A_29955_CDS 695 737 695 738 PF06203.14 CCT Motif 1 43 44 61.0 8e-17 1 CL0281
Cotton_A_22072_CDS 228 284 228 284 PF03106.15 WRKY Domain 1 59 59 84.1 5.9e-24 1 CL0274
Cotton_A_22072_CDS 399 456 399 456 PF03106.15 WRKY Domain 1 59 59 90.9 4.4e-26 1 CL0274
Cotton_A_17008_CDS 10 123 7 123 PF04535.12 DUF588 Domain 4 128 150 75.5 3.6e-21 1 CL0396
Cotton_A_24892_CDS 13 91 5 94 PF02519.14 Auxin_inducible Family 2 74 90 48.3 8.6e-13 1 No_clan
Cotton_A_11089_CDS 12 139 10 145 PF00160.21 Pro_isomerase Domain 3 124 158 121.2 4.7e-35 1 CL0475
Cotton_A_16268_CDS 15 246 15 246 PF01370.21 Epimerase Family 1 241 241 250.3 1.7e-74 1 CL0063
Cotton_A_00947_CDS 39 151 37 153 PF07732.15 Cu-oxidase_3 Domain 3 117 119 141.3 1.3e-41 1 CL0026
Cotton_A_00947_CDS 164 314 163 316 PF00394.22 Cu-oxidase Domain 2 157 159 134.7 3e-39 1 CL0026
Cotton_A_00947_CDS 444 558 422 560 PF07731.14 Cu-oxidase_2 Domain 24 135 137 127.5 2.8e-37 1 CL0026
Cotton_A_05247_CDS 135 632 134 634 PF02450.15 LCAT Family 2 389 392 198.0 2.7e-58 1 CL0028
Cotton_A_21475_CDS 195 359 194 360 PF00270.29 DEAD Domain 2 175 176 150.2 4.7e-44 1 CL0023
Cotton_A_21475_CDS 396 502 393 502 PF00271.31 Helicase_C Family 4 111 111 97.1 7.6e-28 1 CL0023
Cotton_A_10636_CDS 12 50 12 65 PF04749.17 PLAC8 Family 1 39 99 38.1 2.4e-09 1 No_clan
Cotton_A_06896_CDS 206 475 206 480 PF00069.25 Pkinase Domain 1 258 264 149.5 1.1e-43 1 CL0016
Cotton_A_08109_CDS 39 651 39 652 PF03169.15 OPT Family 1 615 616 480.3 9.5e-144 1 No_clan
Cotton_A_18680_CDS 1 370 1 370 PF00297.22 Ribosomal_L3 Family 1 369 369 637.8 4.9e-192 1 CL0575
Cotton_A_04419_CDS 328 417 324 418 PF04379.14 DUF525 Family 7 86 87 81.9 3e-23 1 CL0159
Cotton_A_00038_CDS 126 174 126 193 PF01842.25 ACT Domain 1 52 67 37.1 1.9e-09 1 CL0070
Cotton_A_00038_CDS 340 401 338 404 PF01842.25 ACT Domain 3 64 67 37.9 1.1e-09 1 CL0070
Cotton_A_03780_CDS 87 191 87 191 PF04526.13 DUF568 Family 1 101 101 91.3 5.2e-26 1 No_clan
Cotton_A_03780_CDS 212 336 211 340 PF03188.16 Cytochrom_B561 Family 2 130 137 34.1 2.6e-08 1 CL0328
Cotton_A_22390_CDS 7 98 3 99 PF00153.27 Mito_carr Family 5 96 97 58.7 3.9e-16 1 No_clan
Cotton_A_22390_CDS 105 188 102 189 PF00153.27 Mito_carr Family 4 96 97 33.2 3.6e-08 1 No_clan
Cotton_A_22390_CDS 203 299 201 303 PF00153.27 Mito_carr Family 4 90 97 55.0 5.6e-15 1 No_clan
Cotton_A_07390_CDS 12 88 12 89 PF00347.23 Ribosomal_L6 Domain 1 75 76 59.5 3.7e-16 1 No_clan
Cotton_A_29176_CDS 11 135 10 135 PF02365.15 NAM Family 2 126 126 126.3 1.3e-36 1 No_clan
Cotton_A_35080_CDS 7 57 3 58 PF00670.21 AdoHcyase_NAD Domain 24 74 162 53.9 2.1e-14 1 CL0063
Cotton_A_32451_CDS 46 248 45 250 PF03087.14 DUF241 Family 2 205 234 215.3 1.1e-63 1 CL0133
Cotton_A_27880_CDS 1 76 1 88 PF00069.25 Pkinase Domain 80 151 264 49.6 3.3e-13 1 CL0016
Cotton_A_24348_CDS 139 185 137 185 PF00010.26 HLH Domain 4 53 53 52.3 4.1e-14 1 No_clan
Cotton_A_09060_CDS 30 182 30 183 PF04051.16 TRAPP Family 1 145 146 143.2 4.6e-42 1 CL0210
Cotton_A_39668_CDS 6 198 1 199 PF02171.17 Piwi Family 105 294 302 148.9 1.9e-43 1 CL0219
Cotton_A_31467_CDS 66 121 65 126 PF00226.31 DnaJ Domain 2 57 63 51.4 8.5e-14 1 CL0392
Cotton_A_31467_CDS 159 203 146 204 PF13370.6 Fer4_13 Domain 11 57 58 26.9 5.4e-06 1 CL0344
Cotton_A_10693_CDS 34 209 34 209 PF00270.29 DEAD Domain 1 176 176 159.4 7.3e-47 1 CL0023
Cotton_A_17472_CDS 219 255 217 255 PF00400.32 WD40 Repeat 3 38 38 13.1 0.14 1 CL0186
Cotton_A_30833_CDS 123 303 123 303 PF00390.19 malic Domain 1 182 182 256.2 1.5e-76 1 CL0603
Cotton_A_30833_CDS 313 581 313 581 PF03949.15 Malic_M Domain 1 258 258 299.4 1.8e-89 1 CL0063
Cotton_A_23094_CDS 14 174 14 175 PF00071.22 Ras Domain 1 161 162 204.8 5.9e-61 1 CL0023
Cotton_A_33576_CDS 2 266 1 266 PF06814.13 Lung_7-TM_R Family 28 295 295 322.5 2.4e-96 1 CL0192
Cotton_A_32316_CDS 13 169 13 172 PF04101.16 Glyco_tran_28_C Domain 1 164 167 111.2 5.1e-32 1 CL0113
Cotton_A_18907_CDS 62 169 59 172 PF02466.19 Tim17 Family 4 109 111 74.3 9.2e-21 1 No_clan
Cotton_A_38945_CDS 248 598 247 598 PF12043.8 DUF3527 Family 2 351 351 401.1 5.5e-120 1 CL0395
Cotton_A_00088_CDS 100 359 100 360 PF02485.21 Branch Family 1 246 247 246.4 2.9e-73 1 CL0110
Cotton_A_06395_CDS 3 213 3 214 PF00091.25 Tubulin Domain 1 196 197 227.0 2.3e-67 1 CL0566
Cotton_A_06395_CDS 263 392 263 393 PF03953.17 Tubulin_C Domain 1 125 126 172.4 4.2e-51 1 CL0442
Cotton_A_12200_CDS 82 116 81 116 PF05553.11 DUF761 Family 2 36 36 43.7 1.4e-11 1 No_clan
Cotton_A_22770_CDS 55 232 55 232 PF01397.21 Terpene_synth Domain 1 192 192 170.1 4.1e-50 1 No_clan
Cotton_A_22770_CDS 263 527 263 527 PF03936.16 Terpene_synth_C Domain 1 267 267 321.4 4.2e-96 1 CL0613
Cotton_A_33758_CDS 83 251 81 253 PF02492.19 cobW Domain 3 175 177 108.3 3.1e-31 1 CL0023
Cotton_A_06209_CDS 127 191 125 193 PF01842.25 ACT Domain 3 65 67 28.7 8e-07 1 CL0070
Cotton_A_33465_CDS 3 95 3 112 PF14226.6 DIOX_N Family 1 98 118 69.3 4.5e-19 1 CL0029
Cotton_A_33465_CDS 158 252 155 252 PF03171.20 2OG-FeII_Oxy Domain 7 101 101 98.7 2.3e-28 1 CL0029
Cotton_A_10317_CDS 88 372 79 373 PF01095.19 Pectinesterase Family 9 297 298 243.6 1.8e-72 1 CL0268
Cotton_A_19452_CDS 155 494 155 494 PF01074.22 Glyco_hydro_38N Domain 1 289 289 342.9 1.5e-102 1 CL0158
Cotton_A_19452_CDS 500 602 499 602 PF09261.11 Alpha-mann_mid Domain 2 96 96 77.3 7.7e-22 1 CL0599
Cotton_A_19452_CDS 758 966 758 966 PF07748.13 Glyco_hydro_38C Domain 1 214 214 115.7 3e-33 1 CL0103
Cotton_A_26902_CDS 66 120 65 120 PF14416.6 PMR5N Domain 2 53 53 49.2 4.7e-13 1 No_clan
Cotton_A_26902_CDS 121 408 121 409 PF13839.6 PC-Esterase Family 1 282 283 236.7 4.2e-70 1 CL0264
Cotton_A_11048_CDS 176 277 176 278 PF02362.21 B3 Family 1 100 101 76.5 1.1e-21 1 CL0405
Cotton_A_11048_CDS 302 383 302 384 PF06507.13 Auxin_resp Family 1 82 83 104.9 2e-30 1 No_clan
Cotton_A_11048_CDS 727 764 716 769 PF02309.16 AUX_IAA Family 194 231 237 23.5 4.2e-05 1 CL0072
Cotton_A_32162_CDS 48 209 47 209 PF05078.12 DUF679 Family 2 163 163 229.6 1.9e-68 1 No_clan
Cotton_A_06498_CDS 45 201 40 216 PF03151.16 TPT Family 6 159 290 43.2 2.9e-11 1 CL0184
Cotton_A_11393_CDS 173 259 173 260 PF03088.16 Str_synth Family 1 88 89 109.5 6.8e-32 1 CL0186
Cotton_A_40947_CDS 5 79 5 92 PF02365.15 NAM Family 1 70 126 60.9 2.2e-16 1 No_clan
Cotton_A_13127_CDS 51 176 51 176 PF02365.15 NAM Family 1 126 126 127.0 7.6e-37 1 No_clan
Cotton_A_06421_CDS 5 49 5 49 PF12515.8 CaATP_NAI Family 1 45 45 66.3 1.3e-18 1 No_clan
Cotton_A_06421_CDS 222 301 186 302 PF13246.6 Cation_ATPase Family 10 90 91 69.3 2.2e-19 1 CL0137
Cotton_A_06421_CDS 448 504 445 510 PF08282.12 Hydrolase_3 Domain 194 248 255 21.1 0.00021 1 CL0137
Cotton_A_06421_CDS 549 723 548 723 PF00689.21 Cation_ATPase_C Family 2 182 182 135.5 1.6e-39 1 No_clan
Cotton_A_16250_CDS 18 76 18 82 PF01918.21 Alba Family 1 60 67 45.9 3.6e-12 1 CL0441
Cotton_A_26771_CDS 52 139 52 139 PF03330.18 DPBB_1 Domain 1 83 83 74.5 6.3e-21 1 CL0199
Cotton_A_26771_CDS 150 227 150 227 PF01357.21 Pollen_allerg_1 Domain 1 80 80 82.1 2.2e-23 1 CL0159
Cotton_A_26746_CDS 133 195 133 201 PF00076.22 RRM_1 Domain 1 62 70 59.5 2.1e-16 1 CL0221
Cotton_A_26746_CDS 224 289 224 293 PF00076.22 RRM_1 Domain 1 65 70 64.1 7.5e-18 1 CL0221
Cotton_A_26746_CDS 638 664 635 664 PF00397.26 WW Domain 4 31 31 34.4 1.7e-08 1 CL0680
Cotton_A_09043_CDS 189 397 189 398 PF03360.16 Glyco_transf_43 Family 1 204 205 218.0 1.1e-64 1 CL0110
Cotton_A_23228_CDS 133 219 130 227 PF00295.17 Glyco_hydro_28 Domain 4 85 325 35.5 5.6e-09 1 CL0268
Cotton_A_17133_CDS 3 97 3 97 PF14368.6 LTP_2 Family 1 97 97 51.0 1.2e-13 1 CL0482
Cotton_A_07537_CDS 56 192 56 194 PF01565.23 FAD_binding_4 Domain 1 136 139 83.5 1.1e-23 1 CL0077
Cotton_A_29068_CDS 62 88 62 91 PF13450.6 NAD_binding_8 Domain 1 27 68 24.0 3.3e-05 1 CL0063
Cotton_A_29068_CDS 208 481 208 481 PF08491.10 SE Family 1 276 276 400.2 3.4e-120 1 CL0063
Cotton_A_13253_CDS 28 487 28 487 PF00759.19 Glyco_hydro_9 Domain 1 411 411 478.6 2.3e-143 1 CL0059
Cotton_A_13253_CDS 534 611 534 613 PF09478.10 CBM49 Domain 1 80 81 93.9 5.3e-27 1 CL0203
Cotton_A_35006_CDS 15 58 14 60 PF00076.22 RRM_1 Domain 25 67 70 36.3 3.6e-09 1 CL0221
Cotton_A_35006_CDS 84 153 84 155 PF00076.22 RRM_1 Domain 1 68 70 50.0 1.9e-13 1 CL0221
Cotton_A_35006_CDS 198 241 198 253 PF00076.22 RRM_1 Domain 1 49 70 39.8 2.9e-10 1 CL0221
Cotton_A_16816_CDS 13 48 12 53 PF00646.33 F-box Domain 7 42 48 32.4 5.8e-08 1 CL0271
Cotton_A_16816_CDS 208 305 207 363 PF07734.13 FBA_1 Family 2 93 164 22.9 6.4e-05 1 CL0162
Cotton_A_05724_CDS 67 211 67 211 PF01565.23 FAD_binding_4 Domain 1 139 139 75.7 2.9e-21 1 CL0077
Cotton_A_05724_CDS 243 427 243 427 PF09265.10 Cytokin-bind Domain 1 184 281 235.4 8e-70 1 CL0277
Cotton_A_20307_CDS 28 129 27 137 PF00704.28 Glyco_hydro_18 Domain 2 100 312 42.3 7.7e-11 1 CL0058
Cotton_A_00404_CDS 204 268 194 268 PF16135.5 Jas Family 13 76 76 33.3 4e-08 1 No_clan
Cotton_A_00404_CDS 356 427 354 427 PF16135.5 Jas Family 4 76 76 78.3 3.6e-22 1 No_clan
Cotton_A_00404_CDS 456 496 455 498 PF00628.29 PHD Domain 2 50 52 31.7 1e-07 1 CL0390
Cotton_A_06979_CDS 53 156 53 156 PF00011.21 HSP20 Family 1 102 102 105.6 1.2e-30 1 CL0190
Cotton_A_09306_CDS 193 244 191 252 PF00170.21 bZIP_1 Family 4 55 64 50.6 1.5e-13 1 CL0018
Cotton_A_09306_CDS 261 384 261 385 PF12498.8 bZIP_C Family 1 122 123 119.2 2e-34 1 No_clan
Cotton_A_34148_CDS 14 120 12 129 PF00168.30 C2 Domain 4 95 103 31.5 1.7e-07 1 CL0154
Cotton_A_25779_CDS 110 260 110 260 PF00005.27 ABC_tran Domain 1 137 137 88.8 4.5e-25 1 CL0023
Cotton_A_25779_CDS 423 543 423 546 PF01061.24 ABC2_membrane Family 1 125 210 81.4 5.8e-23 1 CL0181
Cotton_A_07819_CDS 65 140 64 140 PF04640.14 PLATZ Family 2 82 82 61.7 7.6e-17 1 No_clan
Cotton_A_29340_CDS 7 303 7 304 PF05368.13 NmrA Family 1 232 233 224.1 1.8e-66 1 CL0063
Cotton_A_40291_CDS 17 75 17 85 PF00076.22 RRM_1 Domain 1 60 70 51.5 6.4e-14 1 CL0221
Cotton_A_40291_CDS 105 164 105 175 PF00076.22 RRM_1 Domain 1 59 70 58.7 3.8e-16 1 CL0221
Cotton_A_15779_CDS 14 443 13 444 PF03071.15 GNT-I Family 2 433 434 631.1 8.2e-190 1 CL0110
Cotton_A_11010_CDS 83 219 83 219 PF03479.15 DUF296 Domain 1 107 107 81.9 3.9e-23 1 CL0615
Cotton_A_37881_CDS 24 319 23 322 PF01406.19 tRNA-synt_1e Family 2 298 301 416.0 8.7e-125 1 CL0039
Cotton_A_00806_CDS 245 269 243 277 PF00806.19 PUF Repeat 3 27 35 20.0 0.00036 1 CL0020
Cotton_A_00806_CDS 279 313 279 313 PF00806.19 PUF Repeat 1 35 35 40.4 1.2e-10 1 CL0020
Cotton_A_00806_CDS 323 350 321 353 PF00806.19 PUF Repeat 6 32 35 23.8 2.3e-05 1 CL0020
Cotton_A_00806_CDS 357 389 355 389 PF00806.19 PUF Repeat 3 35 35 32.6 3.9e-08 1 CL0020
Cotton_A_00806_CDS 394 423 392 425 PF00806.19 PUF Repeat 4 33 35 30.0 2.5e-07 1 CL0020
Cotton_A_28863_CDS 37 99 36 105 PF08240.12 ADH_N Domain 2 63 109 37.1 2.2e-09 1 CL0296
Cotton_A_28863_CDS 169 252 169 268 PF00107.26 ADH_zinc_N Family 1 91 130 62.2 4.8e-17 1 CL0063
Cotton_A_17425_CDS 268 384 245 389 PF00201.18 UDPGT Family 276 385 499 102.8 2e-29 1 CL0113
Cotton_A_01419_CDS 95 222 91 223 PF00892.20 EamA Family 13 136 137 53.5 2.7e-14 1 CL0184
Cotton_A_17598_CDS 8 262 7 263 PF02900.18 LigB Domain 2 272 273 205.7 7e-61 1 CL0283
Cotton_A_05319_CDS 43 154 42 157 PF01426.18 BAH Domain 2 108 122 36.0 5.2e-09 1 No_clan
Cotton_A_37529_CDS 99 402 98 405 PF13249.6 SQHop_cyclase_N Domain 2 288 291 133.6 7.1e-39 1 CL0059
Cotton_A_37529_CDS 429 767 428 767 PF13243.6 SQHop_cyclase_C Domain 2 319 319 151.8 2.3e-44 1 CL0059
Cotton_A_00813_CDS 42 110 27 114 PF04667.17 Endosulfine Family 5 77 80 79.2 1.9e-22 1 No_clan
Cotton_A_26864_CDS 1 76 1 76 PF02181.23 FH2 Family 220 295 372 78.3 6.1e-22 1 No_clan
Cotton_A_12331_CDS 67 188 62 190 PF07714.17 Pkinase_Tyr Domain 7 129 259 61.5 7.5e-17 1 CL0016
Cotton_A_00044_CDS 26 65 25 65 PF08263.12 LRRNT_2 Family 2 41 41 43.6 2.7e-11 1 No_clan
Cotton_A_00044_CDS 117 139 117 139 PF00560.33 LRR_1 Repeat 1 23 23 12.9 0.13 1 CL0022
Cotton_A_36663_CDS 1 94 1 94 PF07777.11 MFMR Family 1 97 97 119.6 6.2e-35 1 No_clan
Cotton_A_36663_CDS 128 244 126 248 PF16596.5 MFMR_assoc Disordered 3 131 134 78.7 5.3e-22 1 No_clan
Cotton_A_36663_CDS 260 322 260 323 PF00170.21 bZIP_1 Family 1 63 64 75.4 2.8e-21 1 CL0018
Cotton_A_26901_CDS 66 92 66 112 PF13450.6 NAD_binding_8 Domain 1 27 68 23.2 6e-05 1 CL0063
Cotton_A_26901_CDS 213 486 212 486 PF08491.10 SE Family 2 276 276 310.9 6e-93 1 CL0063
Cotton_A_33571_CDS 54 186 54 189 PF03188.16 Cytochrom_B561 Family 1 134 137 149.0 8.8e-44 1 CL0328
Cotton_A_23745_CDS 1 225 1 226 PF00854.21 PTR2 Family 15 211 395 167.5 4.1e-49 1 CL0015
Cotton_A_23029_CDS 102 341 100 391 PF01643.17 Acyl-ACP_TE Family 3 218 248 228.0 1.1e-67 1 CL0050
Cotton_A_17545_CDS 130 187 127 187 PF13855.6 LRR_8 Repeat 5 61 61 32.4 5.5e-08 1 CL0022
Cotton_A_17545_CDS 199 213 197 215 PF13516.6 LRR_6 Repeat 3 17 24 11.5 0.26 1 CL0022
Cotton_A_38859_CDS 9 67 8 68 PF08221.11 HTH_9 Domain 2 60 62 81.5 3.4e-23 1 CL0123
Cotton_A_38859_CDS 145 363 144 365 PF05645.13 RNA_pol_Rpc82 Family 2 256 258 67.9 1.1e-18 1 CL0123
Cotton_A_07134_CDS 63 244 3 245 PF04614.12 Pex19 Family 60 243 244 132.8 1.7e-38 1 No_clan
Cotton_A_20266_CDS 9 99 9 116 PF18052.1 Rx_N Domain 1 91 93 89.7 1.1e-25 1 No_clan
Cotton_A_20266_CDS 175 408 174 426 PF00931.22 NB-ARC Domain 2 229 252 160.0 5.7e-47 1 CL0023
Cotton_A_06581_CDS 234 483 218 487 PF04577.14 DUF563 Family 3 205 209 83.5 2.2e-23 1 No_clan
Cotton_A_11972_CDS 22 128 21 129 PF16457.5 PH_12 Domain 3 133 134 32.2 1.3e-07 1 CL0266
Cotton_A_11972_CDS 329 377 328 377 PF00415.18 RCC1 Repeat 2 50 50 43.1 5e-11 1 CL0186
Cotton_A_11972_CDS 381 432 380 432 PF00415.18 RCC1 Repeat 2 50 50 39.7 5.5e-10 1 CL0186
Cotton_A_11972_CDS 436 484 435 484 PF00415.18 RCC1 Repeat 2 50 50 46.0 6.1e-12 1 CL0186
Cotton_A_11972_CDS 499 548 499 548 PF00415.18 RCC1 Repeat 1 50 50 50.6 2.2e-13 1 CL0186
Cotton_A_11972_CDS 551 600 551 600 PF00415.18 RCC1 Repeat 1 50 50 28.5 1.7e-06 1 CL0186
Cotton_A_11972_CDS 605 652 605 652 PF00415.18 RCC1 Repeat 3 50 50 51.3 1.3e-13 1 CL0186
Cotton_A_11972_CDS 656 722 655 723 PF01363.21 FYVE Domain 2 67 68 45.7 5.3e-12 1 CL0390
Cotton_A_11972_CDS 916 950 916 952 PF13713.6 BRX_N Domain 1 35 37 63.1 1.4e-17 1 No_clan
Cotton_A_11972_CDS 957 1026 957 1026 PF16627.5 BRX_assoc Disordered 1 70 70 69.7 1.7e-19 1 No_clan
Cotton_A_11972_CDS 1032 1087 1032 1087 PF08381.11 BRX Domain 1 56 56 101.5 1.2e-29 1 No_clan
Cotton_A_17603_CDS 9 31 8 32 PF13912.6 zf-C2H2_6 Domain 2 24 27 18.0 0.0022 1 CL0361
Cotton_A_17603_CDS 206 230 205 231 PF13912.6 zf-C2H2_6 Domain 2 26 27 37.6 1.5e-09 1 CL0361
Cotton_A_17603_CDS 290 314 290 315 PF13912.6 zf-C2H2_6 Domain 1 25 27 47.3 1.3e-12 1 CL0361
Cotton_A_37903_CDS 47 226 43 227 PF00625.21 Guanylate_kin Domain 5 181 182 128.8 1.8e-37 1 CL0023
Cotton_A_20667_CDS 37 146 37 147 PF14226.6 DIOX_N Family 1 117 118 86.6 2e-24 1 CL0029
Cotton_A_20667_CDS 194 289 191 289 PF03171.20 2OG-FeII_Oxy Domain 5 101 101 88.4 3.6e-25 1 CL0029
Cotton_A_27002_CDS 21 181 21 182 PF00071.22 Ras Domain 1 161 162 226.4 1.3e-67 1 CL0023
Cotton_A_22154_CDS 31 338 31 341 PF00657.22 Lipase_GDSL Family 1 197 200 50.8 1.9e-13 1 CL0264
Cotton_A_23645_CDS 80 102 80 102 PF00096.26 zf-C2H2 Domain 1 23 23 16.3 0.0098 1 CL0361
Cotton_A_05228_CDS 14 609 6 614 PF05879.12 RHD3 Family 25 638 743 796.6 2.1e-239 1 CL0023
Cotton_A_15343_CDS 54 205 54 206 PF00719.19 Pyrophosphatase Domain 1 159 160 189.8 2.7e-56 1 No_clan
Cotton_A_21402_CDS 60 132 25 133 PF12796.7 Ank_2 Repeat 24 82 83 31.2 2.4e-07 1 CL0465
Cotton_A_21402_CDS 266 286 266 287 PF18044.1 zf-CCCH_4 Domain 1 21 22 28.6 8.9e-07 1 CL0537
Cotton_A_12729_CDS 87 166 86 173 PF13837.6 Myb_DNA-bind_4 Domain 2 83 90 62.2 4.6e-17 1 CL0123
Cotton_A_07254_CDS 96 184 95 187 PF02575.16 YbaB_DNA_bd Family 2 90 91 61.6 6.1e-17 1 No_clan
Cotton_A_30281_CDS 11 107 11 115 PF12165.8 Alfin Family 1 108 127 152.9 3.1e-45 1 No_clan
Cotton_A_32134_CDS 17 178 17 179 PF00071.22 Ras Domain 1 161 162 219.2 2.3e-65 1 CL0023
Cotton_A_30174_CDS 1 72 1 74 PF03936.16 Terpene_synth_C Domain 71 144 267 87.4 9.6e-25 1 CL0613
Cotton_A_16873_CDS 30 269 30 269 PF01370.21 Epimerase Family 1 241 241 153.8 5.3e-45 1 CL0063
Cotton_A_08133_CDS 2 151 1 152 PF07250.11 Glyoxal_oxid_N Family 101 239 240 195.9 5.7e-58 1 No_clan
Cotton_A_08133_CDS 307 413 307 413 PF09118.11 DUF1929 Domain 1 96 96 78.6 3.2e-22 1 CL0159
Cotton_A_25880_CDS 4 61 4 64 PF00076.22 RRM_1 Domain 1 65 70 60.7 8.5e-17 1 CL0221
Cotton_A_25880_CDS 95 157 95 158 PF00076.22 RRM_1 Domain 1 69 70 49.0 4.1e-13 1 CL0221
Cotton_A_29298_CDS 2 63 2 66 PF00076.22 RRM_1 Domain 1 62 70 55.1 4.8e-15 1 CL0221
Cotton_A_03340_CDS 99 415 99 415 PF12215.8 Glyco_hydr_116N Family 1 312 312 344.5 6.3e-103 1 CL0103
Cotton_A_03340_CDS 531 891 531 891 PF04685.13 DUF608 Domain 1 361 361 509.4 5.6e-153 1 CL0059
Cotton_A_35151_CDS 87 142 45 144 PF00408.20 PGM_PMM_IV Family 23 72 74 45.4 7e-12 1 No_clan
Cotton_A_32863_CDS 1050 1091 1044 1095 PF00957.21 Synaptobrevin Family 24 65 89 26.3 4.8e-06 1 CL0445
Cotton_A_03411_CDS 93 143 93 143 PF13041.6 PPR_2 Repeat 1 49 50 31.8 1.2e-07 1 CL0020
Cotton_A_03411_CDS 171 196 171 198 PF01535.20 PPR Family 4 29 31 17.6 0.0032 1 CL0020
Cotton_A_03411_CDS 198 243 196 244 PF13041.6 PPR_2 Repeat 3 49 50 31.1 1.9e-07 1 CL0020
Cotton_A_03411_CDS 300 347 299 349 PF13041.6 PPR_2 Repeat 2 48 50 38.7 8.7e-10 1 CL0020
Cotton_A_03411_CDS 375 400 374 402 PF01535.20 PPR Family 2 27 31 13.5 0.063 1 CL0020
Cotton_A_03411_CDS 476 601 476 601 PF14432.6 DYW_deaminase Family 1 127 127 120.7 3.4e-35 1 CL0109
Cotton_A_11936_CDS 47 191 45 194 PF04535.12 DUF588 Domain 3 147 150 135.6 1.1e-39 1 CL0396
Cotton_A_03597_CDS 47 265 39 266 PF03767.14 Acid_phosphat_B Family 10 229 230 253.8 1.5e-75 1 CL0137
Cotton_A_09435_CDS 52 149 52 149 PF04900.12 Fcf1 Family 1 99 99 94.8 3.2e-27 1 CL0280
Cotton_A_22897_CDS 28 246 26 254 PF00139.19 Lectin_legB Domain 3 234 249 194.3 2.4e-57 1 CL0004
Cotton_A_22897_CDS 326 597 323 599 PF00069.25 Pkinase Domain 4 260 264 180.5 3.8e-53 1 CL0016
Cotton_A_06437_CDS 9 77 3 81 PF00139.19 Lectin_legB Domain 133 204 249 48.3 9.3e-13 1 CL0004
Cotton_A_06437_CDS 123 320 123 321 PF00069.25 Pkinase Domain 1 194 264 164.1 4e-48 1 CL0016
Cotton_A_28292_CDS 46 147 46 149 PF14226.6 DIOX_N Family 1 117 118 73.5 2.3e-20 1 CL0029
Cotton_A_28292_CDS 201 298 198 298 PF03171.20 2OG-FeII_Oxy Domain 4 101 101 98.1 3.3e-28 1 CL0029
Cotton_A_13846_CDS 128 267 128 268 PF00388.19 PI-PLC-X Family 1 144 145 166.9 2e-49 1 CL0384
Cotton_A_13846_CDS 340 427 315 428 PF00387.19 PI-PLC-Y Family 26 114 115 96.5 1.3e-27 1 CL0384
Cotton_A_13846_CDS 450 549 448 559 PF00168.30 C2 Domain 3 92 103 44.9 1.1e-11 1 CL0154
Cotton_A_13846_CDS 630 772 630 773 PF00388.19 PI-PLC-X Family 1 144 145 167.9 9.9e-50 1 CL0384
Cotton_A_13846_CDS 869 955 855 955 PF00387.19 PI-PLC-Y Family 28 115 115 95.5 2.4e-27 1 CL0384
Cotton_A_13846_CDS 998 1076 968 1084 PF00168.30 C2 Domain 20 94 103 39.0 7.4e-10 1 CL0154
Cotton_A_21423_CDS 5 377 4 377 PF00022.19 Actin Family 2 407 407 492.2 9.3e-148 1 CL0108
Cotton_A_05898_CDS 83 146 83 146 PF00462.24 Glutaredoxin Domain 1 60 60 59.4 2.9e-16 1 CL0172
Cotton_A_03978_CDS 51 148 4 148 PF04520.13 Senescence_reg Family 70 168 168 104.4 1.1e-29 1 No_clan
Cotton_A_05755_CDS 55 145 54 146 PF06749.12 DUF1218 Family 2 90 91 75.0 5.3e-21 1 No_clan
Cotton_A_14817_CDS 6 46 5 51 PF00319.18 SRF-TF Domain 2 42 48 56.7 1.2e-15 1 No_clan
Cotton_A_09645_CDS 85 154 85 154 PF01287.20 eIF-5a Domain 1 69 69 103.4 5.2e-30 1 CL0021
Cotton_A_39617_CDS 35 58 35 65 PF02298.17 Cu_bind_like Domain 1 24 84 24.6 1.9e-05 1 CL0026
Cotton_A_27641_CDS 56 108 52 108 PF05498.11 RALF Family 6 65 65 27.5 4.7e-06 1 No_clan
Cotton_A_35306_CDS 49 113 49 113 PF05617.11 Prolamin_like Domain 1 71 71 61.0 9.1e-17 1 CL0482
Cotton_A_33413_CDS 21 230 20 231 PF00149.28 Metallophos Domain 2 203 204 73.3 3.7e-20 1 CL0163
Cotton_A_30478_CDS 32 144 30 145 PF01426.18 BAH Domain 3 121 122 84.6 4.5e-24 1 No_clan
Cotton_A_30478_CDS 149 197 149 198 PF00628.29 PHD Domain 1 51 52 38.1 1e-09 1 CL0390
Cotton_A_36462_CDS 33 311 33 313 PF00332.18 Glyco_hydro_17 Domain 1 275 313 224.1 3.1e-66 1 CL0058
Cotton_A_09454_CDS 30 129 29 130 PF14523.6 Syntaxin_2 Domain 2 100 101 80.5 9.1e-23 1 CL0445
Cotton_A_09454_CDS 213 264 212 264 PF05739.19 SNARE Family 2 53 53 39.2 5.1e-10 1 No_clan
Cotton_A_06556_CDS 2 38 1 44 PF00848.19 Ring_hydroxyl_A Domain 171 207 214 35.8 7.6e-09 1 CL0209
Cotton_A_40472_CDS 186 231 185 243 PF00403.26 HMA Domain 2 48 62 49.9 3.3e-13 1 No_clan
Cotton_A_23141_CDS 4 66 4 66 PF12738.7 PTCB-BRCT Family 1 63 63 70.7 7.5e-20 1 CL0459
Cotton_A_23141_CDS 381 427 380 427 PF13639.6 zf-RING_2 Domain 2 44 44 36.8 3.7e-09 1 CL0229
Cotton_A_20975_CDS 78 153 35 153 PF05542.11 DUF760 Family 8 84 84 67.4 1.1e-18 1 No_clan
Cotton_A_04783_CDS 15 98 15 98 PF14438.6 SM-ATX Domain 1 81 81 39.6 4.4e-10 1 CL0527
Cotton_A_21338_CDS 126 151 125 155 PF01535.20 PPR Family 2 27 31 18.5 0.0016 1 CL0020
Cotton_A_21338_CDS 223 269 223 271 PF13041.6 PPR_2 Repeat 1 47 50 41.1 1.4e-10 1 CL0020
Cotton_A_21338_CDS 324 365 324 373 PF13041.6 PPR_2 Repeat 1 42 50 41.1 1.5e-10 1 CL0020
Cotton_A_21338_CDS 400 423 400 427 PF01535.20 PPR Family 4 27 31 14.3 0.037 1 CL0020
Cotton_A_21338_CDS 440 463 428 463 PF01535.20 PPR Family 8 31 31 10.3 0.71 1 CL0020
Cotton_A_21338_CDS 569 692 568 692 PF14432.6 DYW_deaminase Family 2 127 127 135.9 6.9e-40 1 CL0109
Cotton_A_23060_CDS 86 164 81 168 PF00686.19 CBM_20 Family 8 91 97 59.6 2e-16 1 CL0369
Cotton_A_23060_CDS 958 1251 934 1252 PF01326.19 PPDK_N Family 19 309 328 115.6 2.8e-33 1 CL0179
Cotton_A_27261_CDS 174 259 174 262 PF00855.17 PWWP Domain 1 93 96 56.9 2.1e-15 1 CL0049
Cotton_A_15963_CDS 26 54 25 56 PF02861.20 Clp_N Family 4 32 53 22.6 8.6e-05 1 No_clan
Cotton_A_15963_CDS 133 168 132 171 PF02861.20 Clp_N Family 13 50 53 13.0 0.082 1 No_clan
Cotton_A_12056_CDS 147 310 146 323 PF01490.18 Aa_trans Family 2 172 409 75.8 2.6e-21 1 CL0062
Cotton_A_12056_CDS 327 475 317 478 PF01490.18 Aa_trans Family 243 406 409 58.9 3.5e-16 1 CL0062
Cotton_A_00567_CDS 1 97 1 99 PF00025.21 Arf Domain 15 111 175 145.3 1.3e-42 1 CL0023
Cotton_A_32516_CDS 28 327 28 329 PF00124.19 Photo_RC Family 1 258 260 327.7 4.1e-98 1 No_clan
Cotton_A_16170_CDS 16 277 16 277 PF00069.25 Pkinase Domain 1 264 264 194.6 2e-57 1 CL0016
Cotton_A_36494_CDS 31 310 31 310 PF06217.12 GAGA_bind Domain 1 295 295 345.2 5.8e-103 1 No_clan
Cotton_A_12124_CDS 50 537 41 575 PF03999.12 MAP65_ASE1 Family 17 482 598 295.5 9.1e-88 1 No_clan
Cotton_A_38473_CDS 36 94 36 112 PF01221.18 Dynein_light Domain 1 61 86 87.2 7.1e-25 1 No_clan
Cotton_A_28184_CDS 1 43 1 43 PF16711.5 SCAB-ABD Domain 1 43 43 70.1 1.1e-19 1 No_clan
Cotton_A_28184_CDS 48 80 47 82 PF16712.5 SCAB_CC Family 2 34 168 39.8 3.9e-10 1 No_clan
Cotton_A_27988_CDS 7 130 5 130 PF00410.19 Ribosomal_S8 Domain 3 127 127 78.1 5.3e-22 1 No_clan
Cotton_A_23305_CDS 149 387 148 389 PF05637.12 Glyco_transf_34 Family 2 237 239 239.8 3.2e-71 1 CL0110
Cotton_A_23305_CDS 469 522 468 524 PF06825.12 HSBP1 Coiled-coil 2 49 51 55.7 3.3e-15 1 No_clan
Cotton_A_11161_CDS 203 462 203 463 PF00082.22 Peptidase_S8 Domain 1 298 298 133.7 8e-39 1 No_clan
Cotton_A_19726_CDS 21 117 16 117 PF03297.15 Ribosomal_S25 Family 5 101 101 143.6 1.8e-42 1 CL0123
Cotton_A_13412_CDS 31 50 16 51 PF00400.32 WD40 Repeat 18 37 38 12.8 0.17 1 CL0186
Cotton_A_13412_CDS 64 98 60 98 PF00400.32 WD40 Repeat 6 38 38 24.7 2.9e-05 1 CL0186
Cotton_A_31798_CDS 102 162 102 163 PF04844.13 Ovate Family 1 57 58 80.8 5.1e-23 1 No_clan
Cotton_A_05688_CDS 4 50 1 59 PF00022.19 Actin Family 303 350 407 33.1 2.2e-08 1 CL0108
Cotton_A_25016_CDS 140 1063 140 1063 PF05904.11 DUF863 Family 1 938 938 1034.5 0 1 No_clan
Cotton_A_40902_CDS 143 186 143 186 PF13639.6 zf-RING_2 Domain 1 44 44 44.7 1.2e-11 1 CL0229
Cotton_A_17647_CDS 18 204 18 204 PF03997.12 VPS28 Family 1 189 189 233.6 1.4e-69 1 CL0596
Cotton_A_21209_CDS 22 46 22 46 PF06943.12 zf-LSD1 Domain 1 25 25 41.2 1e-10 1 No_clan
Cotton_A_21209_CDS 90 368 90 376 PF00656.22 Peptidase_C14 Domain 1 239 248 206.6 5.6e-61 1 CL0093
Cotton_A_02025_CDS 36 80 35 81 PF13812.6 PPR_3 Repeat 2 46 63 19.0 0.0011 1 CL0020
Cotton_A_02025_CDS 269 316 269 318 PF13041.6 PPR_2 Repeat 1 48 50 32.5 7.4e-08 1 CL0020
Cotton_A_17432_CDS 2 154 1 155 PF05050.12 Methyltransf_21 Family 23 172 173 48.4 1e-12 1 CL0063
Cotton_A_10813_CDS 319 529 317 602 PF00069.25 Pkinase Domain 3 198 264 149.3 1.3e-43 1 CL0016
Cotton_A_14864_CDS 77 166 77 178 PF01453.24 B_lectin Domain 1 94 105 68.4 6.6e-19 1 No_clan
Cotton_A_14864_CDS 239 317 208 318 PF00954.20 S_locus_glycop Domain 36 110 111 31.4 2.2e-07 1 No_clan
Cotton_A_14864_CDS 334 399 334 403 PF08276.11 PAN_2 Domain 1 62 67 22.3 0.00011 1 CL0168
Cotton_A_14864_CDS 517 727 514 758 PF00069.25 Pkinase Domain 4 212 264 170.4 4.7e-50 1 CL0016
Cotton_A_26168_CDS 85 232 84 236 PF03634.13 TCP Family 2 153 156 138.3 3e-40 1 No_clan
Cotton_A_26301_CDS 36 196 36 197 PF00071.22 Ras Domain 1 161 162 228.1 3.9e-68 1 CL0023
Cotton_A_09036_CDS 38 265 38 315 PF00069.25 Pkinase Domain 1 212 264 65.5 4.6e-18 1 CL0016
Cotton_A_13829_CDS 60 492 51 493 PF12222.8 PNGaseA Family 10 433 434 326.6 2.3e-97 1 No_clan
Cotton_A_25477_CDS 10 57 10 57 PF00319.18 SRF-TF Domain 1 48 48 87.7 2.4e-25 1 No_clan
Cotton_A_27934_CDS 6 213 6 221 PF00300.22 His_Phos_1 Domain 1 186 194 103.5 1.1e-29 1 CL0071
Cotton_A_09472_CDS 29 188 28 188 PF07933.14 DUF1681 Family 2 148 148 171.6 8.5e-51 1 CL0266
Cotton_A_26587_CDS 116 406 116 408 PF07887.11 Calmodulin_bind Family 1 290 292 413.3 5.2e-124 1 No_clan
Cotton_A_05120_CDS 87 728 87 729 PF04551.14 GcpE Family 1 350 351 515.4 7.1e-155 1 No_clan
Cotton_A_12453_CDS 36 334 23 338 PF00899.21 ThiF Domain 14 240 244 235.4 5.7e-70 1 CL0063
Cotton_A_12453_CDS 344 433 344 433 PF08825.10 E2_bind Domain 1 82 82 78.3 3.5e-22 1 No_clan
Cotton_A_27429_CDS 26 81 24 83 PF00403.26 HMA Domain 2 61 62 33.2 5.2e-08 1 No_clan
Cotton_A_03387_CDS 131 218 130 218 PF04116.13 FA_hydroxylase Family 2 89 133 66.4 3.2e-18 1 No_clan
Cotton_A_01980_CDS 23 464 16 464 PF00171.22 Aldedh Family 7 462 462 508.9 1.1e-152 1 CL0099
Cotton_A_31820_CDS 166 284 166 284 PF00188.26 CAP Domain 1 126 126 71.6 9.9e-20 1 CL0659
Cotton_A_20277_CDS 444 574 440 575 PF00271.31 Helicase_C Family 5 110 111 48.9 7.2e-13 1 CL0023
Cotton_A_20277_CDS 638 726 638 740 PF04408.23 HA2 Domain 1 107 108 73.6 1.4e-20 1 No_clan
Cotton_A_20277_CDS 794 875 794 876 PF07717.16 OB_NTP_bind Domain 1 82 83 53.0 3.3e-14 1 CL0021
Cotton_A_20277_CDS 975 1037 975 1037 PF00035.26 dsrm Domain 1 67 67 28.7 1.6e-06 1 CL0196
Cotton_A_21057_CDS 118 152 118 152 PF00805.22 Pentapeptide Repeat 1 35 40 34.0 1.6e-08 1 CL0505
Cotton_A_21057_CDS 181 218 181 218 PF00805.22 Pentapeptide Repeat 1 38 40 50.3 1.3e-13 1 CL0505
Cotton_A_12459_CDS 27 126 24 127 PF00085.20 Thioredoxin Domain 4 102 103 80.8 6.1e-23 1 CL0172
Cotton_A_03210_CDS 42 213 41 214 PF01595.20 DUF21 Domain 2 175 176 117.7 4.3e-34 1 No_clan
Cotton_A_19008_CDS 10 96 9 104 PF12796.7 Ank_2 Repeat 2 73 83 31.1 2.6e-07 1 CL0465
Cotton_A_07556_CDS 61 96 40 97 PF09360.10 zf-CDGSH Domain 28 47 48 35.8 6.9e-09 1 No_clan
Cotton_A_00374_CDS 73 159 73 160 PF03330.18 DPBB_1 Domain 1 82 83 76.0 2e-21 1 CL0199
Cotton_A_00374_CDS 171 248 171 248 PF01357.21 Pollen_allerg_1 Domain 1 80 80 88.2 2.7e-25 1 CL0159
Cotton_A_25515_CDS 97 118 94 120 PF01535.20 PPR Family 5 26 31 11.0 0.42 1 CL0020
Cotton_A_25515_CDS 213 261 212 261 PF13041.6 PPR_2 Repeat 2 50 50 41.5 1.1e-10 1 CL0020
Cotton_A_25515_CDS 285 334 285 334 PF13041.6 PPR_2 Repeat 1 50 50 58.9 4e-16 1 CL0020
Cotton_A_25515_CDS 355 404 355 404 PF13041.6 PPR_2 Repeat 1 50 50 46.4 3.3e-12 1 CL0020
Cotton_A_25515_CDS 426 474 425 474 PF13041.6 PPR_2 Repeat 2 50 50 41.7 1e-10 1 CL0020
Cotton_A_25515_CDS 497 527 497 527 PF01535.20 PPR Family 1 31 31 17.4 0.0038 1 CL0020
Cotton_A_25515_CDS 528 557 526 557 PF12854.7 PPR_1 Repeat 5 34 34 51.5 5.8e-14 1 CL0020
Cotton_A_25515_CDS 564 609 563 612 PF13041.6 PPR_2 Repeat 2 47 50 43.1 3.6e-11 1 CL0020
Cotton_A_05061_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 59.8 2.1e-16 1 CL0123
Cotton_A_05061_CDS 67 112 67 112 PF00249.31 Myb_DNA-binding Domain 1 46 46 53.1 2.6e-14 1 CL0123
Cotton_A_05195_CDS 68 97 68 103 PF00005.27 ABC_tran Domain 1 30 137 25.7 1.3e-05 1 CL0023
Cotton_A_04880_CDS 169 588 169 588 PF06602.14 Myotub-related Domain 1 352 352 424.0 4e-127 1 CL0031
Cotton_A_22088_CDS 45 97 44 104 PF00013.29 KH_1 Domain 2 55 66 44.4 1.1e-11 1 CL0007
Cotton_A_22088_CDS 140 207 140 208 PF00013.29 KH_1 Domain 1 65 66 57.8 7e-16 1 CL0007
Cotton_A_22088_CDS 283 332 282 335 PF00013.29 KH_1 Domain 2 52 66 42.3 4.8e-11 1 CL0007
Cotton_A_22088_CDS 368 435 368 437 PF00013.29 KH_1 Domain 1 64 66 46.4 2.6e-12 1 CL0007
Cotton_A_04736_CDS 3 74 3 74 PF00240.23 ubiquitin Domain 1 72 72 114.1 1.8e-33 1 CL0072
Cotton_A_04736_CDS 79 150 79 150 PF00240.23 ubiquitin Domain 1 72 72 112.9 4.4e-33 1 CL0072
Cotton_A_04736_CDS 155 226 155 226 PF00240.23 ubiquitin Domain 1 72 72 113.1 3.6e-33 1 CL0072
Cotton_A_04736_CDS 231 302 231 302 PF00240.23 ubiquitin Domain 1 72 72 114.6 1.3e-33 1 CL0072
Cotton_A_04736_CDS 307 378 307 378 PF00240.23 ubiquitin Domain 1 72 72 114.1 1.8e-33 1 CL0072
Cotton_A_06792_CDS 98 510 82 510 PF01373.17 Glyco_hydro_14 Domain 10 402 402 306.2 3.4e-91 1 CL0058
Cotton_A_14690_CDS 14 77 13 92 PF13325.6 MCRS_N Family 2 64 199 61.9 7.9e-17 1 No_clan
Cotton_A_26748_CDS 13 86 8 101 PF13456.6 RVT_3 Domain 7 81 124 53.1 2.7e-14 1 CL0219
Cotton_A_09423_CDS 162 200 161 200 PF13923.6 zf-C3HC4_2 Domain 2 40 40 32.8 4.6e-08 1 CL0229
Cotton_A_16534_CDS 5 159 4 159 PF00582.26 Usp Domain 3 141 141 96.1 2.6e-27 1 CL0039
Cotton_A_14344_CDS 52 116 45 128 PF03140.15 DUF247 Family 13 80 397 43.6 2.3e-11 1 No_clan
Cotton_A_14344_CDS 215 319 204 319 PF03140.15 DUF247 Family 292 397 397 91.4 6.7e-26 1 No_clan
Cotton_A_36400_CDS 27 279 17 287 PF13347.6 MFS_2 Family 11 238 427 50.6 1.1e-13 1 CL0015
Cotton_A_32722_CDS 40 487 40 488 PF00759.19 Glyco_hydro_9 Domain 1 410 411 458.8 2.3e-137 1 CL0059
Cotton_A_24021_CDS 126 353 126 353 PF02485.21 Branch Family 1 247 247 275.9 3e-82 1 CL0110
Cotton_A_02353_CDS 66 83 65 85 PF00612.27 IQ Motif 2 19 21 24.5 1.4e-05 1 CL0220
Cotton_A_02353_CDS 88 107 87 107 PF00612.27 IQ Motif 2 21 21 17.3 0.0028 1 CL0220
Cotton_A_02353_CDS 158 211 156 222 PF13178.6 DUF4005 Family 3 56 93 52.8 4.9e-14 1 No_clan
Cotton_A_21915_CDS 2 30 1 30 PF02798.20 GST_N Domain 49 76 76 24.5 2.6e-05 1 CL0172
Cotton_A_21915_CDS 78 142 30 142 PF13410.6 GST_C_2 Domain 7 69 69 49.0 4.4e-13 1 CL0497
Cotton_A_27637_CDS 7 111 1 176 PF00069.25 Pkinase Domain 103 200 264 77.0 1.5e-21 1 CL0016
Cotton_A_29052_CDS 57 118 57 118 PF04818.13 CTD_bind Family 1 63 63 69.0 4.6e-19 1 No_clan
Cotton_A_30581_CDS 30 99 30 101 PF00076.22 RRM_1 Domain 1 68 70 56.6 1.7e-15 1 CL0221
Cotton_A_26667_CDS 139 185 138 185 PF03107.16 C1_2 Domain 2 47 47 33.6 3.5e-08 1 CL0006
Cotton_A_26667_CDS 195 243 195 243 PF03107.16 C1_2 Domain 1 47 47 33.4 4.1e-08 1 CL0006
Cotton_A_26667_CDS 253 302 252 302 PF03107.16 C1_2 Domain 2 47 47 26.3 6.6e-06 1 CL0006
Cotton_A_26667_CDS 312 361 311 361 PF03107.16 C1_2 Domain 2 47 47 33.9 2.9e-08 1 CL0006
Cotton_A_26667_CDS 575 626 574 626 PF03107.16 C1_2 Domain 2 47 47 27.2 3.6e-06 1 CL0006
Cotton_A_05277_CDS 58 236 5 236 PF00657.22 Lipase_GDSL Family 61 200 200 37.1 3.1e-09 1 CL0264
Cotton_A_06494_CDS 33 306 32 307 PF00348.17 polyprenyl_synt Domain 2 255 256 279.3 2.1e-83 1 CL0613
Cotton_A_27578_CDS 110 356 108 358 PF01259.18 SAICAR_synt Family 3 249 252 249.9 2.7e-74 1 No_clan
Cotton_A_36437_CDS 6 530 5 530 PF05091.12 eIF-3_zeta Family 2 520 520 656.3 4.1e-197 1 CL0236
Cotton_A_00135_CDS 353 385 351 385 PF00806.19 PUF Repeat 3 35 35 24.4 1.6e-05 1 CL0020
Cotton_A_00135_CDS 387 421 387 421 PF00806.19 PUF Repeat 1 35 35 38.4 5.4e-10 1 CL0020
Cotton_A_00135_CDS 431 458 429 460 PF00806.19 PUF Repeat 6 33 35 23.2 3.6e-05 1 CL0020
Cotton_A_00135_CDS 464 497 463 497 PF00806.19 PUF Repeat 2 35 35 28.0 1.1e-06 1 CL0020
Cotton_A_00135_CDS 502 532 500 533 PF00806.19 PUF Repeat 4 34 35 30.1 2.3e-07 1 CL0020
Cotton_A_19619_CDS 21 56 15 56 PF18511.1 F-box_5 Domain 7 42 42 68.8 2.1e-19 1 CL0271
Cotton_A_19619_CDS 75 121 75 121 PF18791.1 Transp_inhibit Family 1 47 47 79.9 6.9e-23 1 No_clan
Cotton_A_00024_CDS 9 136 8 136 PF00903.25 Glyoxalase Domain 2 128 128 31.1 2.3e-07 1 CL0104
Cotton_A_06275_CDS 5 87 5 118 PF18052.1 Rx_N Domain 1 83 93 83.6 8.8e-24 1 No_clan
Cotton_A_06275_CDS 169 392 167 409 PF00931.22 NB-ARC Domain 3 227 252 199.8 4.1e-59 1 CL0023
Cotton_A_32087_CDS 8 144 7 144 PF13302.7 Acetyltransf_3 Domain 2 138 138 81.3 1e-22 1 CL0257
Cotton_A_29085_CDS 1 35 1 35 PF08263.12 LRRNT_2 Family 5 41 41 32.4 8.2e-08 1 No_clan
Cotton_A_29085_CDS 56 100 54 100 PF13855.6 LRR_8 Repeat 17 61 61 28.3 1.1e-06 1 CL0022
Cotton_A_29085_CDS 136 173 136 178 PF12799.7 LRR_4 Repeat 1 39 44 28.2 1.8e-06 1 CL0022
Cotton_A_29085_CDS 302 564 299 566 PF00069.25 Pkinase Domain 4 260 264 103.4 1.3e-29 1 CL0016
Cotton_A_04218_CDS 37 118 37 119 PF05495.12 zf-CHY Domain 1 74 75 67.6 1e-18 1 No_clan
Cotton_A_04218_CDS 172 215 171 216 PF13639.6 zf-RING_2 Domain 2 43 44 33.1 5.1e-08 1 CL0229
Cotton_A_04218_CDS 220 278 220 278 PF14599.6 zinc_ribbon_6 Domain 1 59 59 96.2 8.3e-28 1 No_clan
Cotton_A_09010_CDS 199 575 198 575 PF00368.18 HMG-CoA_red Family 2 367 367 483.9 2.8e-145 1 No_clan
Cotton_A_15854_CDS 1 423 1 439 PF00067.22 p450 Domain 21 447 463 321.8 6.8e-96 1 No_clan
Cotton_A_26931_CDS 26 560 25 563 PF03321.13 GH3 Family 2 524 527 683.0 3.2e-205 1 CL0378
Cotton_A_20229_CDS 82 104 81 105 PF12171.8 zf-C2H2_jaz Family 2 24 27 24.2 2.9e-05 1 CL0361
Cotton_A_17997_CDS 157 269 156 269 PF14288.6 FKS1_dom1 Family 2 129 129 132.2 1.4e-38 1 No_clan
Cotton_A_17997_CDS 872 1669 871 1675 PF02364.15 Glucan_synthase Family 2 811 819 888.4 4.8e-267 1 CL0111
Cotton_A_04175_CDS 1 151 1 151 PF14009.6 DUF4228 Family 1 179 179 105.9 3.1e-30 1 No_clan
Cotton_A_35259_CDS 8 271 8 272 PF00069.25 Pkinase Domain 1 263 264 210.0 3.9e-62 1 CL0016
Cotton_A_27285_CDS 1 128 1 128 PF03514.14 GRAS Family 246 372 374 104.9 4.3e-30 1 CL0063
Cotton_A_18396_CDS 149 205 119 205 PF03171.20 2OG-FeII_Oxy Domain 47 101 101 42.0 1e-10 1 CL0029
Cotton_A_35888_CDS 32 75 31 75 PF13639.6 zf-RING_2 Domain 2 44 44 55.4 5.6e-15 1 CL0229
Cotton_A_06523_CDS 150 259 128 259 PF02469.22 Fasciclin Domain 21 128 128 44.5 1.6e-11 1 No_clan
Cotton_A_31711_CDS 70 88 70 88 PF08137.12 DVL Family 1 19 19 46.6 2.2e-12 1 No_clan
Cotton_A_32546_CDS 10 79 8 79 PF03876.17 SHS2_Rpb7-N Domain 3 70 70 28.7 1.2e-06 1 CL0319
Cotton_A_31612_CDS 9 201 9 202 PF02545.14 Maf Domain 1 165 166 142.1 1.4e-41 1 CL0269
Cotton_A_00812_CDS 56 158 56 253 PF02811.19 PHP Family 1 97 167 35.2 1.4e-08 1 CL0034
Cotton_A_10141_CDS 97 140 96 140 PF13639.6 zf-RING_2 Domain 2 44 44 46.1 4.4e-12 1 CL0229
Cotton_A_12900_CDS 139 186 139 186 PF13041.6 PPR_2 Repeat 1 48 50 40.5 2.4e-10 1 CL0020
Cotton_A_32004_CDS 8 316 7 317 PF02569.15 Pantoate_ligase Family 2 265 266 320.0 9.9e-96 1 CL0039
Cotton_A_27383_CDS 255 356 254 358 PF01399.27 PCI Domain 2 103 105 68.6 5.6e-19 1 CL0123
Cotton_A_33228_CDS 45 273 39 275 PF00194.21 Carb_anhydrase Domain 5 252 254 142.6 1.5e-41 1 No_clan
Cotton_A_21540_CDS 35 245 34 246 PF01596.17 Methyltransf_3 Domain 2 211 212 339.3 6.1e-102 1 CL0063
Cotton_A_20767_CDS 96 182 96 182 PF11942.8 Spt5_N Domain 1 99 99 49.0 9.2e-13 1 No_clan
Cotton_A_20767_CDS 188 269 188 269 PF03439.13 Spt5-NGN Family 1 84 84 91.4 2.4e-26 1 CL0439
Cotton_A_20767_CDS 484 511 484 526 PF00467.29 KOW Family 1 28 32 38.4 7.8e-10 1 CL0107
Cotton_A_39423_CDS 164 398 159 399 PF00931.22 NB-ARC Domain 8 251 252 149.8 7.6e-44 1 CL0023
Cotton_A_12708_CDS 48 353 46 353 PF02535.22 Zip Family 3 333 333 251.0 1.8e-74 1 CL0184
Cotton_A_33499_CDS 83 164 82 164 PF05542.11 DUF760 Family 2 84 84 74.5 6.2e-21 1 No_clan
Cotton_A_33499_CDS 235 318 235 318 PF05542.11 DUF760 Family 1 84 84 68.6 4.6e-19 1 No_clan
Cotton_A_07466_CDS 19 79 19 79 PF06972.11 DUF1296 Family 1 60 60 110.6 2.8e-32 1 CL0214
Cotton_A_16402_CDS 398 529 396 530 PF11995.8 DUF3490 Family 29 160 161 161.1 1.8e-47 1 No_clan
Cotton_A_27961_CDS 39 158 39 165 PF00266.19 Aminotran_5 Domain 1 122 371 36.8 2.1e-09 1 CL0061
Cotton_A_27961_CDS 240 488 224 488 PF00266.19 Aminotran_5 Domain 169 371 371 56.4 2.3e-15 1 CL0061
Cotton_A_27961_CDS 531 614 529 629 PF03476.16 MOSC_N Domain 3 86 120 62.8 2.6e-17 1 No_clan
Cotton_A_09599_CDS 4 133 4 134 PF02365.15 NAM Family 1 125 126 111.4 5.2e-32 1 No_clan
Cotton_A_39719_CDS 131 709 131 732 PF10433.9 MMS1_N Domain 1 465 489 120.4 7.9e-35 1 No_clan
Cotton_A_39719_CDS 1089 1421 1088 1422 PF03178.15 CPSF_A Family 2 321 322 288.5 6.9e-86 1 CL0186
Cotton_A_32300_CDS 28 81 26 82 PF00046.29 Homeodomain Domain 3 56 57 57.3 1e-15 1 CL0123
Cotton_A_32300_CDS 83 124 83 125 PF02183.18 HALZ Coiled-coil 1 42 43 47.4 1.7e-12 1 No_clan
Cotton_A_21947_CDS 309 469 308 469 PF03031.18 NIF Family 2 156 156 180.0 2.6e-53 1 CL0137
Cotton_A_17012_CDS 150 306 148 306 PF04678.13 MCU Family 4 176 176 163.6 4.7e-48 1 No_clan
Cotton_A_04871_CDS 18 94 17 101 PF16561.5 AMPK1_CBM Family 2 75 85 80.4 8.6e-23 1 CL0369
Cotton_A_04871_CDS 341 387 336 392 PF00571.28 CBS Domain 6 52 57 29.3 8.7e-07 1 No_clan
Cotton_A_04871_CDS 425 473 421 474 PF00571.28 CBS Domain 9 56 57 33.5 4.3e-08 1 No_clan
Cotton_A_15737_CDS 13 117 13 120 PF01283.19 Ribosomal_S26e Family 1 105 108 176.9 1.2e-52 1 No_clan
Cotton_A_26560_CDS 5 66 4 73 PF05486.12 SRP9-21 Domain 2 90 97 41.7 1.1e-10 1 CL0623
Cotton_A_20663_CDS 16 92 15 92 PF09340.10 NuA4 Family 2 79 79 85.7 1.5e-24 1 No_clan
Cotton_A_13444_CDS 100 181 90 193 PF01453.24 B_lectin Domain 13 93 105 34.7 2e-08 1 No_clan
Cotton_A_13444_CDS 265 320 244 324 PF00954.20 S_locus_glycop Domain 45 104 111 26.8 5.7e-06 1 No_clan
Cotton_A_24862_CDS 86 190 86 190 PF01453.24 B_lectin Domain 1 105 105 143.4 3e-42 1 No_clan
Cotton_A_24862_CDS 222 329 222 330 PF00954.20 S_locus_glycop Domain 1 110 111 92.1 3.1e-26 1 No_clan
Cotton_A_24862_CDS 344 410 344 410 PF08276.11 PAN_2 Domain 1 67 67 69.2 2.4e-19 1 CL0168
Cotton_A_24862_CDS 465 732 464 735 PF07714.17 Pkinase_Tyr Domain 2 256 259 159.5 9.1e-47 1 CL0016
Cotton_A_24862_CDS 737 777 737 777 PF11883.8 DUF3403 Family 1 46 46 34.9 1.2e-08 1 No_clan
Cotton_A_08987_CDS 1 82 1 83 PF00305.19 Lipoxygenase Domain 522 603 674 98.0 4.7e-28 1 No_clan
Cotton_A_38470_CDS 1 58 1 59 PF04783.12 DUF630 Family 1 58 59 74.8 4.5e-21 1 No_clan
Cotton_A_38470_CDS 223 523 222 524 PF04782.12 DUF632 Family 2 309 310 257.0 2.5e-76 1 No_clan
Cotton_A_07729_CDS 100 337 100 357 PF01370.21 Epimerase Family 1 231 241 171.7 1.8e-50 1 CL0063
Cotton_A_16292_CDS 32 333 32 334 PF01301.19 Glyco_hydro_35 Domain 1 315 316 299.7 3.2e-89 1 CL0058
Cotton_A_16292_CDS 342 412 341 412 PF17834.1 GHD Domain 2 72 72 96.1 9.3e-28 1 CL0369
Cotton_A_16292_CDS 595 678 582 683 PF13364.6 BetaGal_dom4_5 Domain 20 108 114 30.4 4.5e-07 1 CL0202
Cotton_A_16292_CDS 735 812 735 812 PF02140.18 Gal_Lectin Domain 1 80 80 71.3 6.7e-20 1 No_clan
Cotton_A_05250_CDS 2 136 1 138 PF02458.15 Transferase Family 2 137 434 94.6 5e-27 1 CL0149
Cotton_A_05250_CDS 139 396 137 399 PF02458.15 Transferase Family 157 411 434 153.3 7.9e-45 1 CL0149
Cotton_A_05719_CDS 111 494 111 495 PF05834.12 Lycopene_cycl Family 1 379 380 435.9 1.3e-130 1 CL0063
Cotton_A_25973_CDS 3 211 3 212 PF00091.25 Tubulin Domain 1 196 197 234.2 1.4e-69 1 CL0566
Cotton_A_25973_CDS 261 382 261 383 PF03953.17 Tubulin_C Domain 1 125 126 139.8 5e-41 1 CL0442
Cotton_A_10473_CDS 116 159 115 159 PF13639.6 zf-RING_2 Domain 2 44 44 54.1 1.5e-14 1 CL0229
Cotton_A_06576_CDS 46 142 40 142 PF02466.19 Tim17 Family 6 111 111 52.2 6.9e-14 1 No_clan
Cotton_A_25829_CDS 8 80 8 106 PF14817.6 HAUS5 Family 1 63 648 85.4 3.9e-24 1 No_clan
Cotton_A_21361_CDS 13 90 4 92 PF00125.24 Histone Domain 51 129 131 54.1 2e-14 1 CL0012
Cotton_A_21361_CDS 93 127 93 127 PF16211.5 Histone_H2A_C Family 1 35 35 65.8 2e-18 1 No_clan
Cotton_A_39625_CDS 26 269 25 278 PF00139.19 Lectin_legB Domain 2 238 249 230.2 2.7e-68 1 CL0004
Cotton_A_39625_CDS 357 622 356 624 PF00069.25 Pkinase Domain 2 259 264 153.5 6.6e-45 1 CL0016
Cotton_A_27415_CDS 39 264 34 266 PF00194.21 Carb_anhydrase Domain 4 252 254 142.8 1.3e-41 1 No_clan
Cotton_A_31601_CDS 28 144 27 144 PF08615.11 RNase_H2_suC Family 2 140 141 81.5 6.5e-23 1 CL0662
Cotton_A_23195_CDS 24 430 23 434 PF01490.18 Aa_trans Family 2 405 409 211.7 1.5e-62 1 CL0062
Cotton_A_19421_CDS 59 153 58 154 PF02298.17 Cu_bind_like Domain 1 83 84 25.0 1.4e-05 1 CL0026
Cotton_A_23843_CDS 237 331 237 332 PF01588.20 tRNA_bind Domain 1 95 96 90.9 4.1e-26 1 CL0021
Cotton_A_21520_CDS 137 186 137 186 PF07797.14 DUF1639 Family 1 50 50 81.3 3.5e-23 1 No_clan
Cotton_A_18626_CDS 273 317 272 321 PF13041.6 PPR_2 Repeat 2 46 50 43.9 2.1e-11 1 CL0020
Cotton_A_18626_CDS 350 376 347 376 PF01535.20 PPR Family 5 31 31 11.0 0.4 1 CL0020
Cotton_A_18626_CDS 379 426 378 427 PF13041.6 PPR_2 Repeat 2 49 50 57.8 9.4e-16 1 CL0020
Cotton_A_18626_CDS 436 496 436 497 PF13812.6 PPR_3 Repeat 1 60 63 41.1 1.4e-10 1 CL0020
Cotton_A_18626_CDS 509 564 507 568 PF13812.6 PPR_3 Repeat 3 58 63 51.8 6.3e-14 1 CL0020
Cotton_A_18626_CDS 589 637 589 638 PF13041.6 PPR_2 Repeat 1 49 50 37.8 1.6e-09 1 CL0020
Cotton_A_10117_CDS 165 395 161 397 PF00931.22 NB-ARC Domain 5 250 252 160.4 4.5e-47 1 CL0023
Cotton_A_10117_CDS 596 652 595 653 PF13855.6 LRR_8 Repeat 2 58 61 29.1 6.1e-07 1 CL0022
Cotton_A_11758_CDS 56 129 54 130 PF04667.17 Endosulfine Family 3 79 80 85.9 1.5e-24 1 No_clan
Cotton_A_23497_CDS 103 127 102 128 PF13912.6 zf-C2H2_6 Domain 2 26 27 51.9 4.9e-14 1 CL0361
Cotton_A_23497_CDS 160 183 159 185 PF13912.6 zf-C2H2_6 Domain 2 25 27 45.2 6.2e-12 1 CL0361
Cotton_A_15486_CDS 332 411 258 413 PF10409.9 PTEN_C2 Family 47 133 135 38.8 6.9e-10 1 CL0154
Cotton_A_15321_CDS 10 343 10 348 PF00067.22 p450 Domain 2 336 463 187.3 4.2e-55 1 No_clan
Cotton_A_24475_CDS 103 191 68 205 PF02469.22 Fasciclin Domain 24 115 128 24.4 2.7e-05 1 No_clan
Cotton_A_36398_CDS 48 286 44 290 PF00141.23 peroxidase Domain 5 225 229 236.1 4e-70 1 CL0617
Cotton_A_02469_CDS 107 135 105 136 PF02151.19 UVR Family 7 35 36 22.7 6e-05 1 CL0671
Cotton_A_02469_CDS 141 259 141 260 PF13474.6 SnoaL_3 Domain 1 119 121 88.4 4e-25 1 CL0051
Cotton_A_21452_CDS 18 80 16 81 PF03931.15 Skp1_POZ Domain 3 62 63 24.3 2.6e-05 1 CL0033
Cotton_A_21452_CDS 117 154 117 161 PF01466.19 Skp1 Domain 1 38 48 46.7 2.6e-12 1 No_clan
Cotton_A_07257_CDS 157 504 85 512 PF03969.16 AFG1_ATPase Family 46 338 362 242.0 8.8e-72 1 CL0023
Cotton_A_04438_CDS 34 646 34 647 PF03169.15 OPT Family 1 615 616 477.7 6e-143 1 No_clan
Cotton_A_04633_CDS 8 75 8 76 PF00076.22 RRM_1 Domain 1 69 70 55.7 3.1e-15 1 CL0221
Cotton_A_04633_CDS 108 166 108 180 PF00076.22 RRM_1 Domain 1 58 70 59.2 2.6e-16 1 CL0221
Cotton_A_23710_CDS 153 230 142 232 PF14432.6 DYW_deaminase Family 35 114 127 46.1 4e-12 1 CL0109
Cotton_A_24236_CDS 61 128 61 128 PF00550.25 PP-binding Domain 1 67 67 45.8 5.9e-12 1 CL0314
Cotton_A_26331_CDS 101 201 95 208 PF00067.22 p450 Domain 213 309 463 53.3 1.8e-14 1 No_clan
Cotton_A_26331_CDS 208 291 204 301 PF00067.22 p450 Domain 371 454 463 74.9 5.2e-21 1 No_clan
Cotton_A_25094_CDS 232 261 232 261 PF13540.6 RCC1_2 Repeat 1 30 30 35.0 8.6e-09 1 CL0186
Cotton_A_25094_CDS 370 421 370 421 PF00415.18 RCC1 Repeat 1 50 50 47.8 1.7e-12 1 CL0186
Cotton_A_25094_CDS 424 472 424 472 PF00415.18 RCC1 Repeat 1 50 50 47.9 1.5e-12 1 CL0186
Cotton_A_12792_CDS 128 278 110 287 PF01704.18 UDPGP Family 53 191 413 49.1 3.3e-13 1 CL0110
Cotton_A_22901_CDS 11 110 5 111 PF03004.14 Transposase_24 Family 36 141 142 48.8 7.7e-13 1 No_clan
Cotton_A_34048_CDS 39 93 33 93 PF13855.6 LRR_8 Repeat 7 61 61 30.8 1.8e-07 1 CL0022
Cotton_A_04978_CDS 42 68 42 68 PF08513.11 LisH Domain 1 27 27 27.1 2.8e-06 1 CL0561
Cotton_A_04978_CDS 81 221 78 222 PF10607.9 CLTH Domain 4 147 148 119.3 1.2e-34 1 No_clan
Cotton_A_01314_CDS 45 122 41 123 PF13774.6 Longin Domain 5 83 84 60.4 1.3e-16 1 No_clan
Cotton_A_27609_CDS 77 122 77 122 PF13639.6 zf-RING_2 Domain 1 44 44 45.1 9.3e-12 1 CL0229
Cotton_A_13764_CDS 185 328 184 329 PF00730.25 HhH-GPD Domain 2 107 108 69.7 2.5e-19 1 CL0198
Cotton_A_39442_CDS 513 548 512 549 PF03638.15 TCR Domain 2 37 38 43.1 3.7e-11 1 No_clan
Cotton_A_39442_CDS 600 635 600 637 PF03638.15 TCR Domain 1 36 38 43.9 2.1e-11 1 No_clan
Cotton_A_20960_CDS 26 118 21 123 PF00651.31 BTB Domain 8 102 111 39.1 6.9e-10 1 CL0033
Cotton_A_20960_CDS 210 462 210 462 PF03000.14 NPH3 Family 1 258 258 311.3 5.5e-93 1 No_clan
Cotton_A_40254_CDS 12 173 12 173 PF17144.4 Ribosomal_L5e Family 1 163 163 269.0 1.4e-80 1 CL0267
Cotton_A_40254_CDS 190 278 189 281 PF14204.6 Ribosomal_L18_c Domain 2 92 95 119.8 7.2e-35 1 No_clan
Cotton_A_15874_CDS 210 449 189 465 PF00067.22 p450 Domain 198 445 463 194.0 4e-57 1 No_clan
Cotton_A_30093_CDS 67 128 67 128 PF00226.31 DnaJ Domain 1 63 63 67.1 1.1e-18 1 CL0392
Cotton_A_30093_CDS 442 647 441 647 PF11926.8 DUF3444 Family 2 212 212 262.1 3.5e-78 1 No_clan
Cotton_A_30093_CDS 705 909 703 910 PF11926.8 DUF3444 Family 3 211 212 227.0 1.9e-67 1 No_clan
Cotton_A_14835_CDS 64 134 64 135 PF04564.15 U-box Domain 1 71 73 57.2 1.4e-15 1 CL0229
Cotton_A_14749_CDS 72 184 72 185 PF03479.15 DUF296 Domain 1 106 107 95.3 2.6e-27 1 CL0615
Cotton_A_13199_CDS 138 156 136 156 PF00612.27 IQ Motif 3 21 21 24.1 1.9e-05 1 CL0220
Cotton_A_13199_CDS 162 178 159 178 PF00612.27 IQ Motif 5 21 21 13.2 0.059 1 CL0220
Cotton_A_13199_CDS 373 468 373 483 PF13178.6 DUF4005 Family 1 76 93 80.6 1e-22 1 No_clan
Cotton_A_02138_CDS 198 346 197 358 PF00069.25 Pkinase Domain 2 147 264 127.1 7.6e-37 1 CL0016
Cotton_A_02138_CDS 431 534 419 534 PF00069.25 Pkinase Domain 154 264 264 74.7 7.1e-21 1 CL0016
Cotton_A_04180_CDS 65 338 64 363 PF00698.21 Acyl_transf_1 Domain 2 261 319 98.2 6.1e-28 1 CL0323
Cotton_A_02352_CDS 127 250 125 254 PF06814.13 Lung_7-TM_R Family 3 127 295 57.2 1.6e-15 1 CL0192
Cotton_A_33455_CDS 111 129 103 130 PF14383.6 VARLMGL Domain 13 31 32 27.9 1.2e-06 1 No_clan
Cotton_A_33455_CDS 219 263 219 263 PF12552.8 DUF3741 Family 1 45 45 79.3 1.4e-22 1 No_clan
Cotton_A_33455_CDS 814 986 813 986 PF14309.6 DUF4378 Family 5 165 165 102.3 3.5e-29 1 No_clan
Cotton_A_38460_CDS 153 331 153 336 PF10250.9 O-FucT Family 1 200 336 129.6 2.1e-37 1 CL0113
Cotton_A_38460_CDS 351 505 347 505 PF10250.9 O-FucT Family 198 336 336 97.2 1.5e-27 1 CL0113
Cotton_A_26527_CDS 262 322 262 322 PF13855.6 LRR_8 Repeat 1 61 61 31.5 1.1e-07 1 CL0022
Cotton_A_26527_CDS 408 429 407 429 PF00560.33 LRR_1 Repeat 2 23 23 13.1 0.11 1 CL0022
Cotton_A_26527_CDS 431 453 431 453 PF00560.33 LRR_1 Repeat 1 23 23 13.1 0.11 1 CL0022
Cotton_A_05613_CDS 301 439 300 439 PF07526.11 POX Domain 2 136 136 95.9 2.9e-27 1 No_clan
Cotton_A_05613_CDS 499 538 499 538 PF05920.11 Homeobox_KN Family 1 40 40 52.4 3.4e-14 1 CL0123
Cotton_A_08151_CDS 1 189 1 196 PF14009.6 DUF4228 Family 1 170 179 61.8 1.1e-16 1 No_clan
Cotton_A_34792_CDS 29 181 29 189 PF03162.13 Y_phosphatase2 Domain 1 153 165 214.5 6.5e-64 1 CL0031
Cotton_A_31547_CDS 50 148 33 165 PF01612.20 DNA_pol_A_exo1 Domain 16 118 176 61.2 9.9e-17 1 CL0219
Cotton_A_31759_CDS 16 122 15 122 PF01655.18 Ribosomal_L32e Family 2 108 108 170.2 1.4e-50 1 No_clan
Cotton_A_19642_CDS 53 128 52 147 PF16053.5 MRP-S34 Family 2 84 129 35.8 5.2e-09 1 No_clan
Cotton_A_38218_CDS 18 138 2 138 PF11721.8 Malectin Domain 48 165 165 116.2 1.5e-33 1 CL0202
Cotton_A_38218_CDS 169 436 166 436 PF07714.17 Pkinase_Tyr Domain 5 259 259 169.7 7e-50 1 CL0016
Cotton_A_17198_CDS 24 110 16 111 PF01486.17 K-box Family 6 92 93 93.4 7.3e-27 1 No_clan
Cotton_A_40111_CDS 6 76 4 88 PF00063.21 Myosin_head Domain 94 167 677 82.3 2.3e-23 1 CL0023
Cotton_A_34202_CDS 190 217 177 218 PF00400.32 WD40 Repeat 9 37 38 16.5 0.012 1 CL0186
Cotton_A_34202_CDS 267 303 263 304 PF00400.32 WD40 Repeat 3 37 38 20.3 0.00075 1 CL0186
Cotton_A_34202_CDS 316 348 312 348 PF00400.32 WD40 Repeat 5 38 38 12.2 0.27 1 CL0186
Cotton_A_34202_CDS 358 396 355 396 PF00400.32 WD40 Repeat 4 37 38 15.4 0.025 1 CL0186
Cotton_A_10596_CDS 822 870 821 871 PF13920.6 zf-C3HC4_3 Domain 2 49 50 42.4 4.5e-11 1 CL0229
Cotton_A_34585_CDS 57 120 57 120 PF05498.11 RALF Family 1 65 65 95.8 2.3e-27 1 No_clan
Cotton_A_06374_CDS 9 54 9 55 PF00249.31 Myb_DNA-binding Domain 1 45 46 64.6 6.8e-18 1 CL0123
Cotton_A_06374_CDS 63 104 61 106 PF00249.31 Myb_DNA-binding Domain 3 44 46 51.1 1.1e-13 1 CL0123
Cotton_A_30255_CDS 244 300 239 301 PF13456.6 RVT_3 Domain 15 73 124 28.0 1.5e-06 1 CL0219
Cotton_A_27206_CDS 152 174 152 174 PF00560.33 LRR_1 Repeat 1 23 23 10.9 0.57 1 CL0022
Cotton_A_16331_CDS 7 144 4 147 PF00892.20 EamA Family 4 134 137 32.0 1.1e-07 1 CL0184
Cotton_A_16331_CDS 184 322 183 323 PF00892.20 EamA Family 2 136 137 58.2 9.3e-16 1 CL0184
Cotton_A_08115_CDS 10 136 10 137 PF02365.15 NAM Family 1 125 126 130.1 8.8e-38 1 No_clan
Cotton_A_33232_CDS 60 223 60 223 PF04833.15 COBRA Family 1 165 165 246.3 1.3e-73 1 No_clan
Cotton_A_15880_CDS 8 129 1 130 PF07714.17 Pkinase_Tyr Domain 156 258 259 36.6 3e-09 1 CL0016
Cotton_A_15170_CDS 187 328 186 328 PF10607.9 CLTH Domain 2 148 148 137.8 2.4e-40 1 No_clan
Cotton_A_19763_CDS 80 138 79 151 PF00117.28 GATase Domain 2 57 190 30.5 2.8e-07 1 CL0014
Cotton_A_12423_CDS 59 131 57 131 PF00111.27 Fer2 Domain 3 78 78 50.5 1.5e-13 1 CL0486
Cotton_A_09392_CDS 101 406 99 408 PF00365.20 PFK Domain 3 282 284 211.2 1.9e-62 1 CL0240
Cotton_A_10703_CDS 53 260 32 269 PF00481.21 PP2C Family 29 249 258 101.2 7.2e-29 1 CL0238
Cotton_A_08960_CDS 40 114 40 115 PF00935.19 Ribosomal_L44 Family 1 75 76 119.5 6.3e-35 1 CL0167
Cotton_A_02028_CDS 40 76 39 76 PF01476.20 LysM Domain 9 44 44 24.4 2.2e-05 1 CL0187
Cotton_A_05760_CDS 21 103 14 104 PF02362.21 B3 Family 12 100 101 45.6 4.8e-12 1 CL0405
Cotton_A_05760_CDS 211 307 211 308 PF02362.21 B3 Family 1 100 101 56.2 2.4e-15 1 CL0405
Cotton_A_05989_CDS 18 635 17 636 PF01268.19 FTHFS Family 2 553 554 841.6 2.1e-253 1 CL0023
Cotton_A_02341_CDS 244 280 242 280 PF00400.32 WD40 Repeat 3 38 38 24.5 3.4e-05 1 CL0186
Cotton_A_02341_CDS 347 382 346 383 PF00400.32 WD40 Repeat 2 37 38 27.4 4.1e-06 1 CL0186
Cotton_A_02341_CDS 388 424 387 425 PF00400.32 WD40 Repeat 2 37 38 25.2 2.1e-05 1 CL0186
Cotton_A_35765_CDS 154 207 154 207 PF13867.6 SAP30_Sin3_bdg Family 1 54 54 76.5 1.5e-21 1 No_clan
Cotton_A_22857_CDS 267 612 266 612 PF12043.8 DUF3527 Family 2 351 351 388.8 3.1e-116 1 CL0395
Cotton_A_01315_CDS 17 64 17 64 PF00249.31 Myb_DNA-binding Domain 1 46 46 47.6 1.4e-12 1 CL0123
Cotton_A_01315_CDS 70 115 70 115 PF00249.31 Myb_DNA-binding Domain 1 46 46 58.0 7.9e-16 1 CL0123
Cotton_A_33982_CDS 4 238 2 254 PF05056.12 DUF674 Family 3 238 449 179.6 9.8e-53 1 No_clan
Cotton_A_33982_CDS 263 326 251 329 PF05056.12 DUF674 Family 383 446 449 31.3 9.5e-08 1 No_clan
Cotton_A_01409_CDS 33 80 33 80 PF00249.31 Myb_DNA-binding Domain 1 46 46 54.7 8.1e-15 1 CL0123
Cotton_A_01409_CDS 86 129 86 131 PF00249.31 Myb_DNA-binding Domain 1 44 46 55.2 6e-15 1 CL0123
Cotton_A_25492_CDS 6 80 6 80 PF03671.14 Ufm1 Family 1 75 75 145.1 4.9e-43 1 CL0072
Cotton_A_39372_CDS 30 116 30 116 PF00234.22 Tryp_alpha_amyl Family 1 87 87 40.1 3.8e-10 1 CL0482
Cotton_A_07847_CDS 85 263 85 264 PF16994.5 Glyco_trans_4_5 Family 1 170 171 224.4 6.6e-67 1 CL0113
Cotton_A_07847_CDS 272 452 269 452 PF00534.20 Glycos_transf_1 Family 5 172 172 74.6 6.4e-21 1 CL0113
Cotton_A_31305_CDS 99 153 98 154 PF00046.29 Homeodomain Domain 2 56 57 60.8 8.5e-17 1 CL0123
Cotton_A_31305_CDS 155 189 155 190 PF02183.18 HALZ Coiled-coil 1 42 43 38.9 7.6e-10 1 No_clan
Cotton_A_05156_CDS 18 251 18 251 PF07795.11 DUF1635 Family 1 224 224 316.6 1e-94 1 No_clan
Cotton_A_23918_CDS 122 177 117 201 PF10294.9 Methyltransf_16 Family 22 80 174 20.4 0.00033 1 CL0063
Cotton_A_12345_CDS 46 292 45 293 PF00520.31 Ion_trans Family 2 244 245 118.7 2.4e-34 1 CL0030
Cotton_A_12345_CDS 383 471 381 473 PF00027.29 cNMP_binding Domain 3 87 89 47.6 1.3e-12 1 CL0029
Cotton_A_12345_CDS 665 734 665 734 PF11834.8 KHA Family 1 67 67 82.1 2.2e-23 1 No_clan
Cotton_A_11119_CDS 54 89 51 89 PF00400.32 WD40 Repeat 4 38 38 19.0 0.0019 1 CL0186
Cotton_A_11119_CDS 94 130 93 130 PF00400.32 WD40 Repeat 2 38 38 17.4 0.006 1 CL0186
Cotton_A_11119_CDS 179 214 178 214 PF00400.32 WD40 Repeat 2 38 38 15.7 0.021 1 CL0186
Cotton_A_11119_CDS 266 297 260 297 PF00400.32 WD40 Repeat 7 37 38 31.6 2e-07 1 CL0186
Cotton_A_28785_CDS 20 55 18 59 PF00646.33 F-box Domain 9 44 48 25.1 1.2e-05 1 CL0271
Cotton_A_05050_CDS 16 79 15 80 PF00191.20 Annexin Family 2 65 66 75.1 3.3e-21 1 No_clan
Cotton_A_05050_CDS 88 152 87 152 PF00191.20 Annexin Family 2 66 66 66.9 1.3e-18 1 No_clan
Cotton_A_05050_CDS 171 230 170 234 PF00191.20 Annexin Family 2 61 66 48.5 6.7e-13 1 No_clan
Cotton_A_05050_CDS 246 310 245 310 PF00191.20 Annexin Family 2 66 66 58.1 7e-16 1 No_clan
Cotton_A_15151_CDS 244 381 226 382 PF03018.14 Dirigent Family 16 147 148 104.0 6.1e-30 1 CL0650
Cotton_A_22447_CDS 91 601 91 602 PF03141.16 Methyltransf_29 Family 1 505 506 765.0 3e-230 1 CL0063
Cotton_A_16468_CDS 77 296 76 296 PF04720.12 PDDEXK_6 Family 2 221 221 261.8 5.9e-78 1 No_clan
Cotton_A_04977_CDS 4 37 1 37 PF00400.32 WD40 Repeat 7 38 38 15.0 0.034 1 CL0186
Cotton_A_04977_CDS 44 79 41 79 PF00400.32 WD40 Repeat 4 38 38 13.7 0.091 1 CL0186
Cotton_A_04977_CDS 86 121 83 121 PF00400.32 WD40 Repeat 4 38 38 26.6 7.3e-06 1 CL0186
Cotton_A_04977_CDS 127 163 125 163 PF00400.32 WD40 Repeat 3 38 38 37.4 3e-09 1 CL0186
Cotton_A_04977_CDS 167 205 167 205 PF00400.32 WD40 Repeat 1 38 38 27.6 3.7e-06 1 CL0186
Cotton_A_04977_CDS 760 918 760 918 PF13925.6 Katanin_con80 Domain 1 160 160 179.2 5.8e-53 1 No_clan
Cotton_A_34098_CDS 26 82 25 83 PF02701.15 zf-Dof Family 2 58 59 112.2 9.2e-33 1 No_clan
Cotton_A_30181_CDS 107 129 105 132 PF01535.20 PPR Family 4 26 31 15.6 0.014 1 CL0020
Cotton_A_30181_CDS 135 181 134 183 PF13041.6 PPR_2 Repeat 2 48 50 31.9 1.1e-07 1 CL0020
Cotton_A_30181_CDS 238 284 237 286 PF13041.6 PPR_2 Repeat 2 48 50 30.3 3.4e-07 1 CL0020
Cotton_A_30181_CDS 341 387 339 389 PF13041.6 PPR_2 Repeat 3 48 50 33.6 3.3e-08 1 CL0020
Cotton_A_30181_CDS 416 441 416 443 PF01535.20 PPR Family 4 29 31 12.7 0.11 1 CL0020
Cotton_A_30181_CDS 444 471 444 473 PF01535.20 PPR Family 1 28 31 28.2 1.3e-06 1 CL0020
Cotton_A_15221_CDS 42 131 42 132 PF03101.15 FAR1 Domain 1 89 90 104.1 4.7e-30 1 CL0274
Cotton_A_31863_CDS 4 85 2 86 PF00276.20 Ribosomal_L23 Family 3 84 86 68.0 6.8e-19 1 No_clan
Cotton_A_21939_CDS 272 328 272 328 PF03106.15 WRKY Domain 1 59 59 89.8 9.2e-26 1 CL0274
Cotton_A_21939_CDS 491 548 491 548 PF03106.15 WRKY Domain 1 59 59 84.5 4.4e-24 1 CL0274
Cotton_A_41264_CDS 145 169 140 169 PF02309.16 AUX_IAA Family 190 214 237 29.1 8.3e-07 1 CL0072
Cotton_A_28566_CDS 5 222 5 226 PF00009.27 GTP_EFTU Domain 1 190 194 182.5 6.2e-54 1 CL0023
Cotton_A_28566_CDS 248 313 248 315 PF03144.25 GTP_EFTU_D2 Domain 1 72 74 53.2 3e-14 1 CL0575
Cotton_A_28566_CDS 322 429 321 430 PF03143.17 GTP_EFTU_D3 Domain 2 111 112 134.2 2.3e-39 1 No_clan
Cotton_A_20516_CDS 31 77 29 84 PF12708.7 Pectate_lyase_3 Family 3 49 215 33.9 2.7e-08 1 CL0268
Cotton_A_32455_CDS 1 140 1 140 PF00346.19 Complex1_49kDa Family 100 240 271 141.3 3e-41 1 No_clan
Cotton_A_21774_CDS 17 111 9 112 PF02519.14 Auxin_inducible Family 2 89 90 92.4 1.5e-26 1 No_clan
Cotton_A_11237_CDS 76 120 76 120 PF13639.6 zf-RING_2 Domain 1 44 44 52.0 6.6e-14 1 CL0229
Cotton_A_15422_CDS 71 110 63 111 PF15801.5 zf-C6H2 Domain 8 46 47 33.1 5.2e-08 1 CL0175
Cotton_A_15422_CDS 256 587 256 587 PF03372.23 Exo_endo_phos Domain 1 233 233 98.2 5e-28 1 CL0530
Cotton_A_18620_CDS 27 170 26 174 PF01625.21 PMSR Family 2 146 153 198.6 6.1e-59 1 No_clan
Cotton_A_40402_CDS 10 74 7 76 PF09803.9 Pet100 Family 5 66 73 40.6 2.8e-10 1 No_clan
Cotton_A_27326_CDS 58 101 53 101 PF00010.26 HLH Domain 7 53 53 43.8 1.8e-11 1 No_clan
Cotton_A_13134_CDS 8 434 5 435 PF02458.15 Transferase Family 4 433 434 260.5 2.3e-77 1 CL0149
Cotton_A_10671_CDS 182 212 182 212 PF01535.20 PPR Family 1 31 31 18.1 0.0023 1 CL0020
Cotton_A_10671_CDS 215 263 214 263 PF13041.6 PPR_2 Repeat 2 50 50 63.6 1.4e-17 1 CL0020
Cotton_A_10671_CDS 287 334 287 335 PF13041.6 PPR_2 Repeat 1 48 50 60.3 1.5e-16 1 CL0020
Cotton_A_10671_CDS 354 384 353 385 PF12854.7 PPR_1 Repeat 2 32 34 55.1 4.5e-15 1 CL0020
Cotton_A_10671_CDS 392 441 392 441 PF13041.6 PPR_2 Repeat 1 50 50 67.3 9.5e-19 1 CL0020
Cotton_A_10671_CDS 458 491 458 491 PF12854.7 PPR_1 Repeat 1 34 34 44.1 1.2e-11 1 CL0020
Cotton_A_10671_CDS 497 546 497 546 PF13041.6 PPR_2 Repeat 1 50 50 62.3 3.6e-17 1 CL0020
Cotton_A_29428_CDS 76 267 70 267 PF05634.11 APO_RNA-bind Family 9 200 200 340.3 2.6e-102 1 No_clan
Cotton_A_29428_CDS 311 429 301 434 PF05634.11 APO_RNA-bind Family 70 193 200 90.6 8.5e-26 1 No_clan
Cotton_A_14128_CDS 133 211 132 211 PF04359.14 DUF493 Domain 2 84 84 44.1 2.3e-11 1 CL0070
Cotton_A_34161_CDS 41 418 39 423 PF01490.18 Aa_trans Family 3 374 409 201.0 2.6e-59 1 CL0062
Cotton_A_00756_CDS 80 224 79 228 PF00520.31 Ion_trans Family 2 130 245 59.3 3.2e-16 1 CL0030
Cotton_A_03530_CDS 56 152 55 154 PF07576.12 BRAP2 Family 2 97 99 100.5 4.8e-29 1 CL0221
Cotton_A_03530_CDS 217 276 202 279 PF02148.19 zf-UBP Domain 1 61 64 54.4 1.2e-14 1 CL0229
Cotton_A_25854_CDS 631 796 611 802 PF00270.29 DEAD Domain 15 170 176 49.4 4.3e-13 1 CL0023
Cotton_A_25854_CDS 843 955 835 956 PF00271.31 Helicase_C Family 10 110 111 68.5 5.5e-19 1 CL0023
Cotton_A_00276_CDS 149 207 149 207 PF05383.17 La Domain 1 59 59 64.7 5.9e-18 1 CL0123
Cotton_A_22200_CDS 91 264 88 264 PF16166.5 TIC20 Family 5 181 181 241.8 4e-72 1 No_clan
Cotton_A_13249_CDS 1 34 1 35 PF01423.22 LSM Domain 32 66 67 23.7 2.9e-05 1 CL0527
Cotton_A_00454_CDS 12 41 11 41 PF01535.20 PPR Family 2 31 31 13.5 0.064 1 CL0020
Cotton_A_00454_CDS 78 126 77 126 PF13041.6 PPR_2 Repeat 2 50 50 46.2 3.7e-12 1 CL0020
Cotton_A_00454_CDS 147 196 147 196 PF13041.6 PPR_2 Repeat 1 50 50 57.0 1.6e-15 1 CL0020
Cotton_A_00454_CDS 239 288 239 288 PF13041.6 PPR_2 Repeat 1 50 50 59.3 3.2e-16 1 CL0020
Cotton_A_00454_CDS 340 369 340 370 PF12854.7 PPR_1 Repeat 1 30 34 24.3 1.9e-05 1 CL0020
Cotton_A_00454_CDS 379 425 379 426 PF13041.6 PPR_2 Repeat 1 47 50 44.1 1.7e-11 1 CL0020
Cotton_A_00454_CDS 438 482 437 492 PF13812.6 PPR_3 Repeat 2 46 63 20.3 0.00044 1 CL0020
Cotton_A_00454_CDS 493 517 489 517 PF01535.20 PPR Family 7 31 31 12.7 0.11 1 CL0020
Cotton_A_00454_CDS 520 567 519 568 PF13041.6 PPR_2 Repeat 2 49 50 39.1 6.2e-10 1 CL0020
Cotton_A_00454_CDS 588 637 588 637 PF13041.6 PPR_2 Repeat 1 50 50 72.3 2.7e-20 1 CL0020
Cotton_A_00454_CDS 694 742 693 742 PF13041.6 PPR_2 Repeat 2 50 50 47.1 2e-12 1 CL0020
Cotton_A_00454_CDS 763 810 763 812 PF13041.6 PPR_2 Repeat 1 48 50 54.3 1.1e-14 1 CL0020
Cotton_A_00454_CDS 833 881 833 882 PF13041.6 PPR_2 Repeat 1 49 50 48.7 6.3e-13 1 CL0020
Cotton_A_25945_CDS 19 51 16 54 PF02736.19 Myosin_N Domain 4 36 40 44.5 9.7e-12 1 CL0010
Cotton_A_25945_CDS 70 517 70 518 PF00063.21 Myosin_head Domain 1 447 677 626.1 6.5e-188 1 CL0023
Cotton_A_25122_CDS 243 301 243 301 PF03106.15 WRKY Domain 1 59 59 86.5 1e-24 1 CL0274
Cotton_A_11850_CDS 5 56 1 68 PF04442.14 CtaG_Cox11 Family 80 130 151 62.2 5.5e-17 1 No_clan
Cotton_A_11850_CDS 69 99 65 99 PF04442.14 CtaG_Cox11 Family 121 151 151 29.8 5.3e-07 1 No_clan
Cotton_A_05568_CDS 78 199 77 201 PF00316.20 FBPase Domain 2 124 189 119.9 8.5e-35 1 CL0171
Cotton_A_14381_CDS 17 561 16 565 PF03321.13 GH3 Family 2 523 527 637.3 2.3e-191 1 CL0378
Cotton_A_27118_CDS 95 119 94 120 PF13912.6 zf-C2H2_6 Domain 2 26 27 51.5 6.5e-14 1 CL0361
Cotton_A_27118_CDS 153 176 152 178 PF13912.6 zf-C2H2_6 Domain 2 25 27 47.7 1e-12 1 CL0361
Cotton_A_15015_CDS 2 68 2 68 PF00035.26 dsrm Domain 1 67 67 56.5 3.4e-15 1 CL0196
Cotton_A_15015_CDS 88 152 88 153 PF00035.26 dsrm Domain 1 66 67 52.9 4.5e-14 1 CL0196
Cotton_A_20177_CDS 71 479 69 479 PF01603.20 B56 Family 3 415 415 576.0 4.5e-173 1 CL0020
Cotton_A_37126_CDS 35 317 25 320 PF02668.16 TauD Domain 13 265 268 116.3 2.1e-33 1 CL0029
Cotton_A_12923_CDS 159 241 155 284 PF06480.15 FtsH_ext Family 5 71 109 30.3 4.2e-07 1 No_clan
Cotton_A_03622_CDS 108 201 107 201 PF01329.19 Pterin_4a Domain 2 91 91 76.4 1.4e-21 1 No_clan
Cotton_A_14693_CDS 292 326 292 327 PF00320.27 GATA Domain 1 35 36 60.5 8.4e-17 1 CL0167
Cotton_A_12404_CDS 39 270 39 270 PF03552.14 Cellulose_synt Family 191 426 722 339.9 3.4e-101 1 CL0110
Cotton_A_30871_CDS 24 298 13 298 PF03151.16 TPT Family 14 290 290 71.9 5.6e-20 1 CL0184
Cotton_A_32585_CDS 61 117 59 120 PF00170.21 bZIP_1 Family 5 61 64 40.7 1.9e-10 1 CL0018
Cotton_A_10657_CDS 42 88 41 90 PF13415.6 Kelch_3 Domain 2 47 49 38.3 1.1e-09 1 CL0186
Cotton_A_10657_CDS 131 173 131 175 PF13418.6 Kelch_4 Repeat 1 42 49 38.4 9.2e-10 1 CL0186
Cotton_A_10657_CDS 184 232 184 233 PF13418.6 Kelch_4 Repeat 1 48 49 32.0 8.9e-08 1 CL0186
Cotton_A_10657_CDS 235 281 235 283 PF13418.6 Kelch_4 Repeat 2 47 49 28.3 1.3e-06 1 CL0186
Cotton_A_19126_CDS 325 344 319 345 PF14383.6 VARLMGL Domain 12 31 32 31.2 1.1e-07 1 No_clan
Cotton_A_19126_CDS 886 1070 886 1070 PF14309.6 DUF4378 Family 1 165 165 136.5 1.1e-39 1 No_clan
Cotton_A_25596_CDS 19 117 19 137 PF01190.17 Pollen_Ole_e_I Family 1 94 99 72.5 2.9e-20 1 CL0287
Cotton_A_05816_CDS 91 310 91 311 PF07859.13 Abhydrolase_3 Domain 1 210 211 197.0 3.4e-58 1 CL0028
Cotton_A_14679_CDS 57 104 57 117 PF16320.5 Ribosomal_L12_N Domain 1 44 48 35.1 7.7e-09 1 No_clan
Cotton_A_14679_CDS 129 195 129 196 PF00542.19 Ribosomal_L12 Domain 1 66 67 84.7 4.2e-24 1 No_clan
Cotton_A_17520_CDS 137 173 133 173 PF00400.32 WD40 Repeat 5 38 38 12.7 0.18 1 CL0186
Cotton_A_17520_CDS 278 315 275 315 PF00400.32 WD40 Repeat 5 38 38 22.9 0.00011 1 CL0186
Cotton_A_09510_CDS 6 342 3 365 PF00743.19 FMO-like Family 4 359 532 100.3 8.6e-29 1 CL0063
Cotton_A_25371_CDS 41 108 41 108 PF16209.5 PhoLip_ATPase_N Family 1 67 67 83.5 6.2e-24 1 No_clan
Cotton_A_25371_CDS 533 636 532 639 PF13246.6 Cation_ATPase Family 2 87 91 47.4 1.6e-12 1 CL0137
Cotton_A_25371_CDS 891 1141 891 1142 PF16212.5 PhoLip_ATPase_C Family 1 248 249 274.7 8e-82 1 No_clan
Cotton_A_34170_CDS 3 133 3 133 PF05687.13 BES1_N Family 1 152 152 201.5 9.1e-60 1 No_clan
Cotton_A_09647_CDS 43 313 39 313 PF03662.14 Glyco_hydro_79n Domain 48 318 318 433.0 5.2e-130 1 CL0058
Cotton_A_29913_CDS 145 191 143 191 PF00010.26 HLH Domain 4 53 53 40.2 2.4e-10 1 No_clan
Cotton_A_34644_CDS 8 192 7 192 PF00025.21 Arf Domain 2 175 175 222.1 3.2e-66 1 CL0023
Cotton_A_18116_CDS 1 96 1 97 PF13947.6 GUB_WAK_bind Domain 11 105 106 41.2 2.2e-10 1 No_clan
Cotton_A_18116_CDS 307 576 306 579 PF00069.25 Pkinase Domain 2 260 264 167.5 3.7e-49 1 CL0016
Cotton_A_05636_CDS 97 339 92 343 PF00795.22 CN_hydrolase Family 12 257 261 202.7 6.5e-60 1 No_clan
Cotton_A_16014_CDS 19 326 19 327 PF05212.12 DUF707 Family 1 295 296 465.8 5.5e-140 1 No_clan
Cotton_A_23111_CDS 123 430 122 430 PF00443.29 UCH Family 2 257 257 189.9 5.6e-56 1 CL0125
Cotton_A_18504_CDS 39 123 19 123 PF07173.12 GRDP-like Family 60 141 142 24.4 3.6e-05 1 No_clan
Cotton_A_18504_CDS 121 254 120 254 PF07173.12 GRDP-like Family 2 142 142 128.7 2.4e-37 1 No_clan
Cotton_A_01153_CDS 16 38 16 42 PF05678.14 VQ Motif 1 23 28 40.4 1.5e-10 1 No_clan
Cotton_A_08269_CDS 2 177 1 177 PF13561.6 adh_short_C2 Domain 69 234 234 139.6 1.1e-40 1 CL0063
Cotton_A_23082_CDS 302 377 298 378 PF00789.20 UBX Domain 6 80 81 64.5 7.5e-18 1 CL0072
Cotton_A_04059_CDS 26 147 26 150 PF00072.24 Response_reg Domain 1 109 112 74.7 6e-21 1 CL0304
Cotton_A_14672_CDS 45 552 29 555 PF09814.9 HECT_2 Domain 4 372 376 79.6 2e-22 1 CL0552
Cotton_A_28931_CDS 12 170 12 226 PF00856.28 SET Family 1 96 169 28.0 2.5e-06 1 No_clan
Cotton_A_28752_CDS 34 133 7 133 PF02453.17 Reticulon Family 62 157 157 96.4 1.7e-27 1 CL0484
Cotton_A_04698_CDS 21 292 19 292 PF06454.11 DUF1084 Family 3 273 273 476.6 2.2e-143 1 No_clan
Cotton_A_02748_CDS 73 222 71 222 PF00005.27 ABC_tran Domain 3 137 137 81.1 1e-22 1 CL0023
Cotton_A_02748_CDS 384 589 383 594 PF01061.24 ABC2_membrane Family 2 204 210 116.5 1.1e-33 1 CL0181
Cotton_A_29960_CDS 1 115 1 117 PF03947.18 Ribosomal_L2_C Domain 11 124 126 143.6 3.4e-42 1 CL0107
Cotton_A_34549_CDS 45 257 40 267 PF00067.22 p450 Domain 6 210 463 69.5 2.2e-19 1 No_clan
Cotton_A_00872_CDS 144 187 141 188 PF13812.6 PPR_3 Repeat 20 62 63 15.8 0.011 1 CL0020
Cotton_A_00872_CDS 209 222 208 238 PF01535.20 PPR Family 2 15 31 10.2 0.73 1 CL0020
Cotton_A_00872_CDS 241 289 240 289 PF13041.6 PPR_2 Repeat 2 50 50 52.1 5.4e-14 1 CL0020
Cotton_A_00872_CDS 315 341 314 343 PF01535.20 PPR Family 2 28 31 10.0 0.87 1 CL0020
Cotton_A_03888_CDS 13 112 9 137 PF00335.20 Tetraspanin Family 5 104 229 38.4 1e-09 1 CL0347
Cotton_A_24731_CDS 82 195 82 195 PF03479.15 DUF296 Domain 1 107 107 107.7 3.6e-31 1 CL0615
Cotton_A_05352_CDS 231 401 231 401 PF16994.5 Glyco_trans_4_5 Family 1 171 171 239.7 1.3e-71 1 CL0113
Cotton_A_05352_CDS 548 660 517 661 PF00534.20 Glycos_transf_1 Family 61 171 172 78.2 5.2e-22 1 CL0113
Cotton_A_08749_CDS 15 70 14 72 PF05347.15 Complex1_LYR Family 2 56 59 48.4 7e-13 1 CL0491
Cotton_A_37419_CDS 17 90 9 124 PF14226.6 DIOX_N Family 9 79 118 39.0 1.1e-09 1 CL0029
Cotton_A_37419_CDS 175 260 155 262 PF03171.20 2OG-FeII_Oxy Domain 12 99 101 45.2 1e-11 1 CL0029
Cotton_A_04172_CDS 12 82 12 83 PF00076.22 RRM_1 Domain 1 69 70 35.7 5.7e-09 1 CL0221
Cotton_A_04172_CDS 148 207 148 210 PF00076.22 RRM_1 Domain 1 64 70 50.8 1.1e-13 1 CL0221
Cotton_A_33261_CDS 4 92 3 98 PF00686.19 CBM_20 Family 2 90 97 75.7 2e-21 1 CL0369
Cotton_A_33261_CDS 148 190 147 222 PF00686.19 CBM_20 Family 2 43 97 28.9 7.7e-07 1 CL0369
Cotton_A_33261_CDS 227 853 226 855 PF02446.17 Glyco_hydro_77 Domain 2 466 467 508.1 2.4e-152 1 CL0058
Cotton_A_05824_CDS 123 548 123 553 PF00854.21 PTR2 Family 1 390 395 315.4 4.9e-94 1 CL0015
Cotton_A_11727_CDS 216 248 215 248 PF12579.8 DUF3755 Family 2 34 34 59.9 1.3e-16 1 No_clan
Cotton_A_28318_CDS 38 255 31 256 PF03767.14 Acid_phosphat_B Family 12 229 230 219.6 4.1e-65 1 CL0137
Cotton_A_04191_CDS 2 64 1 64 PF04852.12 DUF640 Family 64 126 126 105.2 2.6e-30 1 No_clan
Cotton_A_11266_CDS 139 155 139 160 PF03106.15 WRKY Domain 1 17 59 22.8 7.7e-05 1 CL0274
Cotton_A_30238_CDS 28 149 23 150 PF00134.23 Cyclin_N Domain 8 126 127 56.1 3.1e-15 1 CL0065
Cotton_A_30238_CDS 152 252 152 272 PF02984.19 Cyclin_C Domain 1 97 119 44.4 1.5e-11 1 CL0065
Cotton_A_23806_CDS 197 277 194 277 PF01985.21 CRS1_YhbY Domain 4 84 84 69.9 1.5e-19 1 No_clan
Cotton_A_23806_CDS 312 395 312 395 PF01985.21 CRS1_YhbY Domain 1 84 84 42.0 7.9e-11 1 No_clan
Cotton_A_28369_CDS 33 70 32 71 PF08263.12 LRRNT_2 Family 2 40 41 47.3 1.9e-12 1 No_clan
Cotton_A_28369_CDS 220 236 219 237 PF13516.6 LRR_6 Repeat 2 18 24 8.8 1.9 1 CL0022
Cotton_A_28369_CDS 272 331 271 331 PF13855.6 LRR_8 Repeat 2 61 61 30.0 3.2e-07 1 CL0022
Cotton_A_28369_CDS 446 505 444 505 PF13855.6 LRR_8 Repeat 3 61 61 32.2 6.5e-08 1 CL0022
Cotton_A_28369_CDS 755 777 755 777 PF00560.33 LRR_1 Repeat 1 23 23 9.7 1.5 1 CL0022
Cotton_A_28369_CDS 871 892 871 892 PF00560.33 LRR_1 Repeat 2 23 23 10.2 1 1 CL0022
Cotton_A_39417_CDS 196 433 195 433 PF03000.14 NPH3 Family 3 258 258 214.9 1.5e-63 1 No_clan
Cotton_A_01702_CDS 53 351 53 359 PF01103.23 Bac_surface_Ag Family 1 308 324 87.4 1.2e-24 1 CL0193
Cotton_A_20241_CDS 5 52 4 52 PF13639.6 zf-RING_2 Domain 2 44 44 30.1 4.4e-07 1 CL0229
Cotton_A_20241_CDS 190 447 183 450 PF00069.25 Pkinase Domain 24 259 264 94.6 6.2e-27 1 CL0016
Cotton_A_20241_CDS 515 596 497 598 PF12796.7 Ank_2 Repeat 4 80 83 40.8 2.4e-10 1 CL0465
Cotton_A_20241_CDS 609 687 608 697 PF12796.7 Ank_2 Repeat 2 68 83 30.4 4.5e-07 1 CL0465
Cotton_A_20241_CDS 728 812 714 813 PF12796.7 Ank_2 Repeat 8 82 83 54.0 1.9e-14 1 CL0465
Cotton_A_31094_CDS 30 234 30 234 PF06999.12 Suc_Fer-like Family 1 195 195 148.4 2.2e-43 1 No_clan
Cotton_A_07720_CDS 147 211 146 211 PF12352.8 V-SNARE_C Domain 2 66 66 53.8 1.8e-14 1 CL0147
Cotton_A_31581_CDS 55 206 55 207 PF00719.19 Pyrophosphatase Domain 1 159 160 185.8 4.5e-55 1 No_clan
Cotton_A_21416_CDS 38 96 23 100 PF15511.6 CENP-T_C Domain 21 79 108 33.0 5.1e-08 1 CL0012
Cotton_A_21937_CDS 70 100 70 100 PF01535.20 PPR Family 1 31 31 10.8 0.48 1 CL0020
Cotton_A_21937_CDS 144 164 144 170 PF01535.20 PPR Family 4 24 31 10.2 0.77 1 CL0020
Cotton_A_21937_CDS 173 199 172 201 PF01535.20 PPR Family 2 28 31 15.9 0.011 1 CL0020
Cotton_A_21937_CDS 203 232 203 233 PF01535.20 PPR Family 1 30 31 25.1 1.3e-05 1 CL0020
Cotton_A_21937_CDS 304 350 303 352 PF13041.6 PPR_2 Repeat 2 48 50 43.6 2.4e-11 1 CL0020
Cotton_A_21937_CDS 378 403 377 405 PF01535.20 PPR Family 2 27 31 13.4 0.071 1 CL0020
Cotton_A_04631_CDS 132 296 130 296 PF01746.21 tRNA_m1G_MT Family 3 195 195 93.4 1.4e-26 1 CL0098
Cotton_A_28679_CDS 51 334 45 336 PF00128.24 Alpha-amylase Domain 14 325 337 55.1 8.6e-15 1 CL0058
Cotton_A_28679_CDS 355 413 355 413 PF07821.12 Alpha-amyl_C2 Domain 1 58 58 70.6 9.6e-20 1 CL0369
Cotton_A_24235_CDS 6 105 5 112 PF00635.26 Motile_Sperm Domain 2 101 109 92.3 1.6e-26 1 CL0556
Cotton_A_11178_CDS 104 224 103 224 PF00903.25 Glyoxalase Domain 2 128 128 78.8 3.8e-22 1 CL0104
Cotton_A_11178_CDS 236 351 234 354 PF00903.25 Glyoxalase Domain 4 125 128 46.0 5.5e-12 1 CL0104
Cotton_A_24098_CDS 1 50 1 50 PF13966.6 zf-RVT Domain 36 85 85 38.5 1.5e-09 1 No_clan
Cotton_A_24098_CDS 151 270 151 273 PF13456.6 RVT_3 Domain 1 121 124 81.3 4.7e-23 1 CL0219
Cotton_A_07696_CDS 61 187 61 187 PF04749.17 PLAC8 Family 1 99 99 80.2 1.7e-22 1 No_clan
Cotton_A_26932_CDS 93 252 93 254 PF14543.6 TAXi_N Domain 1 174 178 128.6 2.9e-37 1 CL0129
Cotton_A_02232_CDS 10 178 5 180 PF00190.22 Cupin_1 Domain 6 149 151 76.6 1.5e-21 1 CL0029
Cotton_A_02232_CDS 219 358 213 361 PF00190.22 Cupin_1 Domain 6 147 151 75.1 4.4e-21 1 CL0029
Cotton_A_11828_CDS 50 151 50 152 PF14226.6 DIOX_N Family 1 117 118 70.3 2.2e-19 1 CL0029
Cotton_A_11828_CDS 205 302 202 302 PF03171.20 2OG-FeII_Oxy Domain 4 101 101 99.9 9.5e-29 1 CL0029
Cotton_A_04754_CDS 159 183 159 184 PF07723.13 LRR_2 Repeat 1 25 26 29.8 6.1e-07 1 CL0022
Cotton_A_04754_CDS 342 386 340 386 PF08387.10 FBD Family 2 46 46 31.9 8.6e-08 1 No_clan
Cotton_A_14443_CDS 32 454 32 466 PF00067.22 p450 Domain 1 446 463 218.0 2.1e-64 1 No_clan
Cotton_A_19295_CDS 321 596 319 598 PF00069.25 Pkinase Domain 3 259 264 144.9 2.9e-42 1 CL0016
Cotton_A_27679_CDS 1 96 1 96 PF01199.18 Ribosomal_L34e Family 1 94 94 130.6 1.9e-38 1 No_clan
Cotton_A_08823_CDS 9 237 9 279 PF05368.13 NmrA Family 1 228 233 188.2 1.6e-55 1 CL0063
Cotton_A_03174_CDS 122 264 121 267 PF01699.24 Na_Ca_ex Family 2 148 151 95.6 2.7e-27 1 No_clan
Cotton_A_03174_CDS 462 507 460 509 PF01699.24 Na_Ca_ex Family 3 48 151 25.0 1.5e-05 1 No_clan
Cotton_A_21970_CDS 28 138 26 138 PF04398.12 DUF538 Family 3 112 112 98.4 3.3e-28 1 No_clan
Cotton_A_00298_CDS 1 21 1 21 PF08071.12 RS4NT Domain 17 37 37 29.4 6.5e-07 1 No_clan
Cotton_A_00298_CDS 29 72 24 72 PF01479.25 S4 Domain 6 48 48 28.1 1.2e-06 1 CL0492
Cotton_A_00298_CDS 77 151 77 151 PF00900.20 Ribosomal_S4e Family 1 75 75 118.9 6.4e-35 1 CL0021
Cotton_A_00298_CDS 159 192 159 193 PF00467.29 KOW Family 1 31 32 27.3 2.5e-06 1 CL0107
Cotton_A_00298_CDS 194 240 194 241 PF16121.5 40S_S4_C Family 1 47 48 92.0 1.3e-26 1 No_clan
Cotton_A_12103_CDS 41 148 41 149 PF00168.30 C2 Domain 1 102 103 43.3 3.4e-11 1 CL0154
Cotton_A_17189_CDS 72 145 72 155 PF00300.22 His_Phos_1 Domain 1 63 194 24.0 2.7e-05 1 CL0071
Cotton_A_19242_CDS 253 413 249 414 PF07724.14 AAA_2 Domain 46 170 171 109.3 2.1e-31 1 CL0023
Cotton_A_19242_CDS 420 490 420 500 PF10431.9 ClpB_D2-small Domain 1 67 81 52.1 5e-14 1 CL0671
Cotton_A_18573_CDS 33 78 32 78 PF03107.16 C1_2 Domain 2 47 47 35.8 7.5e-09 1 CL0006
Cotton_A_18573_CDS 85 125 84 126 PF03107.16 C1_2 Domain 2 40 47 26.9 4.6e-06 1 CL0006
Cotton_A_30229_CDS 40 149 37 151 PF03732.17 Retrotrans_gag Family 13 94 96 30.8 2.6e-07 1 CL0523
Cotton_A_06941_CDS 22 44 18 46 PF13202.6 EF-hand_5 Domain 1 23 25 32.8 3.1e-08 1 CL0220
Cotton_A_06941_CDS 63 81 59 82 PF13202.6 EF-hand_5 Domain 6 24 25 14.9 0.014 1 CL0220
Cotton_A_23212_CDS 82 206 80 211 PF00160.21 Pro_isomerase Domain 3 135 158 84.6 8.8e-24 1 CL0475
Cotton_A_34075_CDS 9 49 7 52 PF00646.33 F-box Domain 4 44 48 25.2 1.1e-05 1 CL0271
Cotton_A_14789_CDS 102 351 95 410 PF00266.19 Aminotran_5 Domain 44 283 371 57.1 1.5e-15 1 CL0061
Cotton_A_04552_CDS 39 110 38 111 PF00364.22 Biotin_lipoyl Domain 2 72 73 60.0 1.5e-16 1 CL0105
Cotton_A_04552_CDS 181 216 181 216 PF02817.17 E3_binding Family 1 36 36 51.8 7.3e-14 1 No_clan
Cotton_A_04552_CDS 242 460 239 462 PF00198.23 2-oxoacid_dh Domain 5 231 233 218.9 6.4e-65 1 CL0149
Cotton_A_21515_CDS 171 399 163 401 PF00931.22 NB-ARC Domain 9 250 252 163.8 4e-48 1 CL0023
Cotton_A_04694_CDS 36 115 35 120 PF00011.21 HSP20 Family 2 88 102 56.4 2.7e-15 1 CL0190
Cotton_A_13842_CDS 2 121 1 121 PF00544.19 Pec_lyase_C Domain 78 211 211 75.2 5.2e-21 1 CL0268
Cotton_A_31347_CDS 83 485 69 505 PF00067.22 p450 Domain 29 441 463 248.7 9.9e-74 1 No_clan
Cotton_A_36621_CDS 78 499 67 499 PF00759.19 Glyco_hydro_9 Domain 17 411 411 313.7 2.5e-93 1 CL0059
Cotton_A_17293_CDS 109 152 104 153 PF00010.26 HLH Domain 6 52 53 33.0 4.3e-08 1 No_clan
Cotton_A_31934_CDS 14 84 12 92 PF13456.6 RVT_3 Domain 17 88 124 44.4 1.3e-11 1 CL0219
Cotton_A_23358_CDS 7 82 3 82 PF03469.14 XH Domain 56 131 131 101.4 3.3e-29 1 No_clan
Cotton_A_06024_CDS 176 235 176 236 PF03106.15 WRKY Domain 1 58 59 87.0 7.2e-25 1 CL0274
Cotton_A_21083_CDS 107 300 106 300 PF01545.21 Cation_efflux Family 2 199 199 103.5 1.2e-29 1 No_clan
Cotton_A_21083_CDS 311 380 305 381 PF16916.5 ZT_dimer Domain 8 77 79 46.9 2.2e-12 1 No_clan
Cotton_A_11728_CDS 32 64 30 65 PF08263.12 LRRNT_2 Family 3 38 41 28.4 1.5e-06 1 No_clan
Cotton_A_11728_CDS 354 618 352 620 PF00069.25 Pkinase Domain 4 260 264 118.6 2.9e-34 1 CL0016
Cotton_A_11446_CDS 68 129 68 129 PF00226.31 DnaJ Domain 1 63 63 84.0 5.9e-24 1 CL0392
Cotton_A_19459_CDS 65 135 65 137 PF04564.15 U-box Domain 1 71 73 44.4 1.4e-11 1 CL0229
Cotton_A_19459_CDS 303 339 301 340 PF00514.23 Arm Repeat 4 40 41 21.7 0.00015 1 CL0020
Cotton_A_19459_CDS 341 380 341 381 PF00514.23 Arm Repeat 1 40 41 25.6 8.8e-06 1 CL0020
Cotton_A_08485_CDS 2 55 2 56 PF08766.11 DEK_C Domain 1 53 54 46.1 3.4e-12 1 No_clan
Cotton_A_08485_CDS 176 247 175 247 PF02201.18 SWIB Domain 2 74 74 92.6 1e-26 1 No_clan
Cotton_A_08485_CDS 279 351 278 352 PF02201.18 SWIB Domain 2 73 74 60.5 1.1e-16 1 No_clan
Cotton_A_00133_CDS 7 60 2 60 PF07333.12 SLR1-BP Domain 6 58 58 37.6 2.2e-09 1 CL0054
Cotton_A_31442_CDS 342 459 342 475 PF00004.29 AAA Domain 1 110 132 47.1 3e-12 1 CL0023
Cotton_A_16235_CDS 135 292 134 296 PF00849.22 PseudoU_synth_2 Family 2 153 160 70.2 2.1e-19 1 CL0649
Cotton_A_16960_CDS 33 114 33 114 PF02298.17 Cu_bind_like Domain 1 84 84 83.1 1.1e-23 1 CL0026
Cotton_A_10913_CDS 34 293 27 300 PF03982.13 DAGAT Family 10 288 297 254.7 8.5e-76 1 CL0228
Cotton_A_04834_CDS 94 237 92 248 PF05697.13 Trigger_N Family 3 131 141 78.6 5.6e-22 1 No_clan
Cotton_A_04834_CDS 375 533 374 533 PF05698.14 Trigger_C Family 2 162 162 78.3 6.4e-22 1 CL0262
Cotton_A_03397_CDS 35 81 35 81 PF00249.31 Myb_DNA-binding Domain 1 46 46 52.2 5.2e-14 1 CL0123
Cotton_A_03397_CDS 87 133 87 133 PF00249.31 Myb_DNA-binding Domain 1 46 46 63.7 1.3e-17 1 CL0123
Cotton_A_03397_CDS 140 181 139 183 PF00249.31 Myb_DNA-binding Domain 2 43 46 58.1 7.5e-16 1 CL0123
Cotton_A_13831_CDS 35 77 34 77 PF08263.12 LRRNT_2 Family 2 41 41 32.7 6.7e-08 1 No_clan
Cotton_A_13831_CDS 104 163 103 163 PF13855.6 LRR_8 Repeat 2 61 61 30.8 1.8e-07 1 CL0022
Cotton_A_13831_CDS 364 622 362 624 PF07714.17 Pkinase_Tyr Domain 4 257 259 89.3 2.3e-25 1 CL0016
Cotton_A_21113_CDS 72 168 48 170 PF01544.18 CorA Family 183 279 292 29.3 5e-07 1 No_clan
Cotton_A_08448_CDS 5 177 5 177 PF00025.21 Arf Domain 1 175 175 266.6 6.7e-80 1 CL0023
Cotton_A_17741_CDS 22 73 20 78 PF00076.22 RRM_1 Domain 3 57 70 33.4 3e-08 1 CL0221
Cotton_A_17741_CDS 129 178 123 182 PF00076.22 RRM_1 Domain 14 66 70 21.0 0.00022 1 CL0221
Cotton_A_17741_CDS 243 321 236 323 PF11835.8 RRM_8 Domain 10 87 89 28.6 1.2e-06 1 CL0221
Cotton_A_29443_CDS 60 188 40 189 PF04420.14 CHD5 Family 33 158 159 38.4 1.1e-09 1 No_clan
Cotton_A_15853_CDS 97 273 96 274 PF00270.29 DEAD Domain 2 175 176 115.7 1.9e-33 1 CL0023
Cotton_A_15853_CDS 319 429 310 429 PF00271.31 Helicase_C Family 9 111 111 85.2 3.7e-24 1 CL0023
Cotton_A_33191_CDS 26 72 24 73 PF01084.20 Ribosomal_S18 Family 3 49 52 64.7 6.7e-18 1 CL0123
Cotton_A_09091_CDS 11 73 10 74 PF17035.5 BET Domain 2 63 64 56.7 1.9e-15 1 CL0665
Cotton_A_09091_CDS 151 219 147 247 PF00348.17 polyprenyl_synt Domain 152 220 256 61.9 4.6e-17 1 CL0613
Cotton_A_35907_CDS 72 310 71 313 PF04414.12 tRNA_deacylase Family 2 201 205 213.4 2.4e-63 1 CL0408
Cotton_A_35572_CDS 69 357 69 358 PF08392.12 FAE1_CUT1_RppA Family 1 289 290 420.2 4.1e-126 1 CL0046
Cotton_A_35572_CDS 375 455 372 456 PF08541.10 ACP_syn_III_C Domain 12 89 90 41.1 1.5e-10 1 CL0046
Cotton_A_24338_CDS 95 180 95 183 PF03109.16 ABC1 Family 1 87 119 80.4 1.2e-22 1 CL0016
Cotton_A_32733_CDS 64 157 63 158 PF01158.18 Ribosomal_L36e Family 2 95 96 140.3 1.8e-41 1 No_clan
Cotton_A_00210_CDS 5 95 5 97 PF02362.21 B3 Family 1 98 101 50.2 1.8e-13 1 CL0405
Cotton_A_00210_CDS 242 331 239 333 PF02362.21 B3 Family 4 99 101 63.4 1.4e-17 1 CL0405
Cotton_A_36546_CDS 25 138 16 139 PF13456.6 RVT_3 Domain 11 123 124 30.0 3.7e-07 1 CL0219
Cotton_A_28305_CDS 57 165 56 166 PF04134.12 DUF393 Family 2 112 113 102.8 2.6e-29 1 No_clan
Cotton_A_12712_CDS 52 359 52 371 PF00171.22 Aldedh Family 1 306 462 385.8 2.2e-115 1 CL0099
Cotton_A_31450_CDS 157 187 156 191 PF05553.11 DUF761 Family 2 32 36 39.5 2.8e-10 1 No_clan
Cotton_A_06205_CDS 114 251 106 261 PF00854.21 PTR2 Family 94 220 395 33.8 1.6e-08 1 CL0015
Cotton_A_06205_CDS 268 361 265 388 PF00854.21 PTR2 Family 268 357 395 24.6 1e-05 1 CL0015
Cotton_A_01528_CDS 189 232 188 232 PF13639.6 zf-RING_2 Domain 2 44 44 49.4 4.1e-13 1 CL0229
Cotton_A_33845_CDS 55 127 55 127 PF00347.23 Ribosomal_L6 Domain 1 76 76 52.2 7.4e-14 1 No_clan
Cotton_A_33845_CDS 135 209 135 210 PF00347.23 Ribosomal_L6 Domain 1 75 76 77.0 1.3e-21 1 No_clan
Cotton_A_30869_CDS 86 158 86 158 PF02941.15 FeThRed_A Domain 1 67 67 90.7 4.7e-26 1 CL0610
Cotton_A_36261_CDS 13 484 13 484 PF05221.17 AdoHcyase Domain 1 299 299 484.5 9.9e-146 1 CL0325
Cotton_A_36261_CDS 240 403 240 403 PF00670.21 AdoHcyase_NAD Domain 1 162 162 278.4 1.9e-83 1 CL0063
Cotton_A_00314_CDS 88 177 83 179 PF00153.27 Mito_carr Family 9 95 97 85.2 2.2e-24 1 No_clan
Cotton_A_00314_CDS 181 268 180 270 PF00153.27 Mito_carr Family 2 95 97 70.3 9.6e-20 1 No_clan
Cotton_A_00314_CDS 273 358 270 361 PF00153.27 Mito_carr Family 4 94 97 70.3 1e-19 1 No_clan
Cotton_A_14698_CDS 46 98 46 98 PF13445.6 zf-RING_UBOX Domain 1 39 39 30.9 2e-07 1 CL0229
Cotton_A_10690_CDS 8 155 7 182 PF00025.21 Arf Domain 2 148 175 194.6 8.8e-58 1 CL0023
Cotton_A_21680_CDS 114 375 112 375 PF07714.17 Pkinase_Tyr Domain 3 259 259 181.4 1.9e-53 1 CL0016
Cotton_A_18248_CDS 1 306 1 306 PF00332.18 Glyco_hydro_17 Domain 7 313 313 330.4 1.4e-98 1 CL0058
Cotton_A_38286_CDS 19 100 14 116 PF00118.24 Cpn60_TCP1 Family 70 161 491 35.0 6.4e-09 1 No_clan
Cotton_A_24486_CDS 189 229 187 235 PF00170.21 bZIP_1 Family 5 45 64 28.9 8.8e-07 1 CL0018
Cotton_A_24486_CDS 271 346 271 347 PF14144.6 DOG1 Family 1 76 77 114.8 1.5e-33 1 No_clan
Cotton_A_25156_CDS 9 31 9 31 PF10584.9 Proteasome_A_N Domain 1 23 23 55.7 2.7e-15 1 CL0052
Cotton_A_25156_CDS 35 220 32 220 PF00227.26 Proteasome Domain 3 190 190 187.9 1.3e-55 1 CL0052
Cotton_A_34768_CDS 68 113 68 113 PF12906.7 RINGv Domain 1 48 48 48.9 5.1e-13 1 CL0229
Cotton_A_34768_CDS 119 235 119 235 PF12428.8 DUF3675 Family 1 119 119 114.9 3e-33 1 No_clan
Cotton_A_12603_CDS 125 206 113 208 PF00153.27 Mito_carr Family 11 95 97 66.7 1.3e-18 1 No_clan
Cotton_A_12603_CDS 217 295 213 297 PF00153.27 Mito_carr Family 10 95 97 40.5 1.9e-10 1 No_clan
Cotton_A_12603_CDS 302 394 300 398 PF00153.27 Mito_carr Family 3 93 97 65.9 2.3e-18 1 No_clan
Cotton_A_10768_CDS 65 164 63 165 PF00085.20 Thioredoxin Domain 3 102 103 81.3 4.3e-23 1 CL0172
Cotton_A_08467_CDS 44 83 43 84 PF08263.12 LRRNT_2 Family 2 40 41 38.9 7.6e-10 1 No_clan
Cotton_A_08467_CDS 111 168 110 168 PF13855.6 LRR_8 Repeat 2 61 61 28.3 1.1e-06 1 CL0022
Cotton_A_08467_CDS 420 690 418 693 PF00069.25 Pkinase Domain 3 260 264 152.2 1.7e-44 1 CL0016
Cotton_A_02117_CDS 39 485 38 492 PF00067.22 p450 Domain 2 456 463 349.5 2.7e-104 1 No_clan
Cotton_A_14125_CDS 157 305 150 310 PF00270.29 DEAD Domain 8 171 176 28.7 1e-06 1 CL0023
Cotton_A_14125_CDS 350 477 339 477 PF00271.31 Helicase_C Family 11 111 111 48.0 1.4e-12 1 CL0023
Cotton_A_14125_CDS 539 613 539 667 PF04408.23 HA2 Domain 1 76 108 75.8 2.8e-21 1 No_clan
Cotton_A_14125_CDS 687 764 687 764 PF07717.16 OB_NTP_bind Domain 1 83 83 65.1 5.6e-18 1 CL0021
Cotton_A_03014_CDS 65 109 63 116 PF01715.17 IPPT Domain 3 47 228 32.7 6.1e-08 1 CL0023
Cotton_A_31892_CDS 34 331 34 332 PF01301.19 Glyco_hydro_35 Domain 1 315 316 373.4 1.1e-111 1 CL0058
Cotton_A_31892_CDS 339 409 339 409 PF17834.1 GHD Domain 1 72 72 92.6 1.1e-26 1 CL0369
Cotton_A_07413_CDS 110 315 102 315 PF01823.19 MACPF Domain 10 209 209 82.1 5.7e-23 1 CL0293
Cotton_A_00370_CDS 63 217 60 253 PF03283.13 PAE Family 6 159 355 252.0 9e-75 1 CL0028
Cotton_A_27605_CDS 6 271 4 273 PF00069.25 Pkinase Domain 4 260 264 159.9 7.3e-47 1 CL0016
Cotton_A_19761_CDS 3 42 1 47 PF00643.24 zf-B_box Domain 4 37 42 26.2 6.3e-06 1 No_clan
Cotton_A_19761_CDS 52 85 51 95 PF00643.24 zf-B_box Domain 2 35 42 30.8 2.4e-07 1 No_clan
Cotton_A_29035_CDS 67 120 67 141 PF03061.22 4HBT Domain 1 56 79 28.8 1.2e-06 1 CL0050
Cotton_A_03296_CDS 23 342 23 344 PF00332.18 Glyco_hydro_17 Domain 1 311 313 265.0 1.1e-78 1 CL0058
Cotton_A_03296_CDS 360 430 359 431 PF07983.13 X8 Domain 2 75 76 69.0 4.1e-19 1 No_clan
Cotton_A_23933_CDS 84 151 83 151 PF00226.31 DnaJ Domain 2 63 63 68.5 4e-19 1 CL0392
Cotton_A_20235_CDS 12 157 11 160 PF03358.15 FMN_red Domain 2 152 155 132.6 9.4e-39 1 CL0042
Cotton_A_34147_CDS 16 78 15 80 PF00191.20 Annexin Family 2 64 66 78.8 2.4e-22 1 No_clan
Cotton_A_34147_CDS 88 152 87 152 PF00191.20 Annexin Family 2 66 66 61.6 5.5e-17 1 No_clan
Cotton_A_34147_CDS 171 234 170 235 PF00191.20 Annexin Family 2 65 66 43.9 1.8e-11 1 No_clan
Cotton_A_34147_CDS 245 310 245 310 PF00191.20 Annexin Family 1 66 66 73.3 1.2e-20 1 No_clan
Cotton_A_11083_CDS 40 97 40 99 PF00226.31 DnaJ Domain 1 59 63 52.7 3.4e-14 1 CL0392
Cotton_A_27809_CDS 63 89 63 91 PF13450.6 NAD_binding_8 Domain 1 27 68 24.0 3.3e-05 1 CL0063
Cotton_A_27809_CDS 209 482 209 482 PF08491.10 SE Family 1 276 276 397.7 2e-119 1 CL0063
Cotton_A_00716_CDS 5 41 1 45 PF00899.21 ThiF Domain 11 47 244 38.5 7.7e-10 1 CL0063
Cotton_A_00716_CDS 57 394 55 433 PF00899.21 ThiF Domain 76 223 244 129.4 1.4e-37 1 CL0063
Cotton_A_00716_CDS 295 353 217 353 PF10585.9 UBA_e1_thiolCys Domain 192 252 252 25.0 1.6e-05 1 No_clan
Cotton_A_00716_CDS 426 518 426 519 PF14732.6 UAE_UbL Domain 1 88 89 78.1 5.8e-22 1 No_clan
Cotton_A_13165_CDS 286 322 283 327 PF13920.6 zf-C3HC4_3 Domain 4 44 50 29.7 4.3e-07 1 CL0229
Cotton_A_12911_CDS 61 635 61 635 PF04734.13 Ceramidase_alk Domain 1 507 507 788.8 2e-237 1 No_clan
Cotton_A_12911_CDS 637 800 637 800 PF17048.5 Ceramidse_alk_C Domain 1 168 168 178.9 7e-53 1 CL0159
Cotton_A_06146_CDS 97 233 97 233 PF04116.13 FA_hydroxylase Family 1 133 133 90.7 9.5e-26 1 No_clan
Cotton_A_37693_CDS 2 116 1 116 PF00252.18 Ribosomal_L16 Family 15 132 132 149.4 5.5e-44 1 No_clan
Cotton_A_12008_CDS 134 611 127 613 PF02696.14 UPF0061 Family 17 466 468 444.4 4.6e-133 1 No_clan
Cotton_A_13445_CDS 20 86 18 98 PF04855.12 SNF5 Family 5 73 237 52.2 7e-14 1 No_clan
Cotton_A_13445_CDS 103 221 102 223 PF04855.12 SNF5 Family 142 234 237 36.9 3.4e-09 1 No_clan
Cotton_A_12931_CDS 190 239 190 239 PF13041.6 PPR_2 Repeat 1 50 50 52.9 3.1e-14 1 CL0020
Cotton_A_12931_CDS 266 293 264 293 PF01535.20 PPR Family 4 31 31 23.3 5e-05 1 CL0020
Cotton_A_12931_CDS 294 322 294 324 PF01535.20 PPR Family 1 29 31 24.9 1.5e-05 1 CL0020
Cotton_A_12931_CDS 323 371 322 372 PF13041.6 PPR_2 Repeat 2 49 50 33.0 4.9e-08 1 CL0020
Cotton_A_12931_CDS 399 423 398 426 PF01535.20 PPR Family 4 28 31 18.1 0.0022 1 CL0020
Cotton_A_12931_CDS 425 472 424 473 PF13041.6 PPR_2 Repeat 2 49 50 41.1 1.4e-10 1 CL0020
Cotton_A_12931_CDS 500 523 499 525 PF01535.20 PPR Family 3 26 31 19.6 0.00075 1 CL0020
Cotton_A_12931_CDS 599 722 598 723 PF14432.6 DYW_deaminase Family 2 126 127 120.5 4e-35 1 CL0109
Cotton_A_00534_CDS 11 97 2 97 PF17766.1 fn3_6 Domain 16 99 99 65.3 4.2e-18 1 CL0159
Cotton_A_10754_CDS 27 66 26 67 PF08263.12 LRRNT_2 Family 2 40 41 42.5 5.8e-11 1 No_clan
Cotton_A_10754_CDS 103 162 102 162 PF13855.6 LRR_8 Repeat 2 61 61 38.1 9.7e-10 1 CL0022
Cotton_A_10754_CDS 479 777 475 779 PF00069.25 Pkinase Domain 7 260 264 95.0 4.7e-27 1 CL0016
Cotton_A_34116_CDS 158 390 158 391 PF02358.16 Trehalose_PPase Family 1 232 233 269.8 1.4e-80 1 CL0137
Cotton_A_05198_CDS 110 169 108 169 PF13855.6 LRR_8 Repeat 3 61 61 36.8 2.5e-09 1 CL0022
Cotton_A_05198_CDS 182 241 181 241 PF13855.6 LRR_8 Repeat 2 61 61 28.6 8.6e-07 1 CL0022
Cotton_A_05198_CDS 304 361 302 361 PF13855.6 LRR_8 Repeat 4 61 61 31.2 1.3e-07 1 CL0022
Cotton_A_05198_CDS 468 526 466 526 PF13855.6 LRR_8 Repeat 3 61 61 35.2 7.5e-09 1 CL0022
Cotton_A_11011_CDS 30 136 30 137 PF00168.30 C2 Domain 1 102 103 38.1 1.5e-09 1 CL0154
Cotton_A_11472_CDS 29 109 29 110 PF13774.6 Longin Domain 1 83 84 83.1 1.1e-23 1 No_clan
Cotton_A_11472_CDS 125 210 124 212 PF00957.21 Synaptobrevin Family 2 87 89 96.9 4.3e-28 1 CL0445
Cotton_A_30200_CDS 1 77 1 77 PF01439.18 Metallothio_2 Family 1 81 81 111.5 2.8e-32 1 No_clan
Cotton_A_26644_CDS 236 292 236 292 PF03106.15 WRKY Domain 1 59 59 92.7 1.2e-26 1 CL0274
Cotton_A_26644_CDS 408 465 408 465 PF03106.15 WRKY Domain 1 59 59 87.5 5e-25 1 CL0274
Cotton_A_13686_CDS 11 202 9 203 PF03936.16 Terpene_synth_C Domain 23 216 267 192.8 7.1e-57 1 CL0613
Cotton_A_05534_CDS 60 111 58 112 PF01344.25 Kelch_1 Repeat 3 45 46 27.6 1.6e-06 1 CL0186
Cotton_A_38670_CDS 27 1602 3 1620 PF11894.8 Nup192 Family 23 1668 1694 375.2 5.6e-112 1 CL0585
Cotton_A_04571_CDS 107 391 107 391 PF00069.25 Pkinase Domain 1 264 264 235.0 9.4e-70 1 CL0016
Cotton_A_05082_CDS 19 37 17 38 PF00560.33 LRR_1 Repeat 3 21 23 9.6 1.6 1 CL0022
Cotton_A_05082_CDS 342 392 337 393 PF00173.28 Cyt-b5 Domain 21 73 74 47.3 1.7e-12 1 No_clan
Cotton_A_28218_CDS 16 201 10 202 PF16213.5 DCB Family 9 177 178 90.0 1.4e-25 1 No_clan
Cotton_A_18617_CDS 1 209 1 210 PF01135.19 PCMT Family 6 209 210 283.0 1.4e-84 1 CL0063
Cotton_A_24226_CDS 5 49 4 52 PF13041.6 PPR_2 Repeat 2 45 50 30.3 3.6e-07 1 CL0020
Cotton_A_24226_CDS 81 104 79 107 PF01535.20 PPR Family 3 26 31 17.7 0.003 1 CL0020
Cotton_A_24226_CDS 109 157 109 158 PF13041.6 PPR_2 Repeat 1 49 50 44.3 1.5e-11 1 CL0020
Cotton_A_24226_CDS 185 204 183 210 PF01535.20 PPR Family 3 22 31 11.9 0.21 1 CL0020
Cotton_A_39537_CDS 1 61 1 63 PF00421.19 PSII Family 445 505 507 94.7 5.2e-27 1 No_clan
Cotton_A_00353_CDS 12 99 12 106 PF01247.18 Ribosomal_L35Ae Domain 1 88 95 141.0 1e-41 1 CL0575
Cotton_A_19312_CDS 72 366 71 368 PF00676.20 E1_dh Family 2 298 300 388.7 1.4e-116 1 CL0254
Cotton_A_33127_CDS 1 165 1 165 PF14009.6 DUF4228 Family 1 179 179 106.0 3e-30 1 No_clan
Cotton_A_11881_CDS 39 73 39 77 PF00462.24 Glutaredoxin Domain 1 35 60 24.6 2.1e-05 1 CL0172
Cotton_A_25153_CDS 325 483 325 485 PF13768.6 VWA_3 Domain 1 153 155 61.4 9.5e-17 1 CL0128
Cotton_A_02167_CDS 41 85 40 87 PF00646.33 F-box Domain 2 46 48 34.0 1.9e-08 1 CL0271
Cotton_A_02167_CDS 184 462 174 467 PF00022.19 Actin Family 83 392 407 113.4 9.2e-33 1 CL0108
Cotton_A_15409_CDS 25 174 24 188 PF00561.20 Abhydrolase_1 Domain 2 141 257 35.4 8.9e-09 1 CL0028
Cotton_A_03418_CDS 272 513 272 513 PF07059.12 DUF1336 Family 1 229 229 207.7 2.5e-61 1 No_clan
Cotton_A_36199_CDS 86 186 85 187 PF00044.24 Gp_dh_N Domain 2 100 101 128.3 1.2e-37 1 CL0063
Cotton_A_36199_CDS 194 347 191 347 PF02800.20 Gp_dh_C Domain 5 158 158 218.1 4.3e-65 1 CL0139
Cotton_A_17954_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 52.5 4.1e-14 1 CL0123
Cotton_A_17954_CDS 67 111 67 112 PF00249.31 Myb_DNA-binding Domain 1 45 46 49.5 3.6e-13 1 CL0123
Cotton_A_16423_CDS 43 102 43 102 PF02704.14 GASA Family 1 60 60 76.7 1.1e-21 1 No_clan
Cotton_A_01668_CDS 6 64 2 65 PF02362.21 B3 Family 38 100 101 35.2 8.6e-09 1 CL0405
Cotton_A_01668_CDS 202 290 190 293 PF02362.21 B3 Family 9 98 101 57.3 1.1e-15 1 CL0405
Cotton_A_01668_CDS 351 444 347 445 PF02362.21 B3 Family 4 100 101 59.4 2.4e-16 1 CL0405
Cotton_A_08045_CDS 282 321 277 321 PF01753.18 zf-MYND Domain 4 38 38 30.5 2.8e-07 1 CL0175
Cotton_A_13876_CDS 116 186 116 186 PF00076.22 RRM_1 Domain 1 70 70 69.4 1.7e-19 1 CL0221
Cotton_A_13876_CDS 196 262 196 264 PF00076.22 RRM_1 Domain 1 64 70 37.1 2e-09 1 CL0221
Cotton_A_13876_CDS 290 359 290 360 PF00076.22 RRM_1 Domain 1 69 70 53.0 2.2e-14 1 CL0221
Cotton_A_20374_CDS 18 100 18 101 PF08542.11 Rep_fac_C Domain 1 87 88 54.3 1.4e-14 1 CL0604
Cotton_A_22118_CDS 145 188 144 188 PF13639.6 zf-RING_2 Domain 2 44 44 48.9 6e-13 1 CL0229
Cotton_A_12305_CDS 21 353 21 353 PF16113.5 ECH_2 Domain 1 334 334 361.7 4.3e-108 1 CL0127
Cotton_A_33023_CDS 49 192 49 194 PF13874.6 Nup54 Domain 1 137 140 104.2 5.9e-30 1 No_clan
Cotton_A_32301_CDS 154 373 154 390 PF00069.25 Pkinase Domain 1 212 264 197.5 2.6e-58 1 CL0016
Cotton_A_08819_CDS 9 45 5 45 PF08263.12 LRRNT_2 Family 5 41 41 29.5 6.6e-07 1 No_clan
Cotton_A_08819_CDS 680 780 664 780 PF07714.17 Pkinase_Tyr Domain 173 259 259 30.5 2.2e-07 1 CL0016
Cotton_A_13729_CDS 15 137 13 150 PF05687.13 BES1_N Family 3 128 152 208.4 6.5e-62 1 No_clan
Cotton_A_24845_CDS 2 246 1 247 PF01501.20 Glyco_transf_8 Family 16 255 256 151.9 2.3e-44 1 CL0110
Cotton_A_13372_CDS 10 240 9 255 PF00743.19 FMO-like Family 2 215 532 124.5 4.3e-36 1 CL0063
Cotton_A_13372_CDS 258 379 243 404 PF00743.19 FMO-like Family 297 419 532 60.4 1.1e-16 1 CL0063
Cotton_A_29806_CDS 12 69 12 70 PF05347.15 Complex1_LYR Family 1 58 59 68.2 4.5e-19 1 CL0491
Cotton_A_03089_CDS 83 138 83 138 PF16450.5 Prot_ATP_ID_OB Domain 1 57 57 31.8 9.8e-08 1 CL0021
Cotton_A_03089_CDS 196 329 196 330 PF00004.29 AAA Domain 1 131 132 146.8 4.7e-43 1 CL0023
Cotton_A_03089_CDS 353 395 352 396 PF17862.1 AAA_lid_3 Domain 2 44 45 55.4 3.7e-15 1 CL0671
Cotton_A_29755_CDS 273 311 272 311 PF00400.32 WD40 Repeat 2 38 38 27.7 3.3e-06 1 CL0186
Cotton_A_29755_CDS 316 354 316 354 PF00400.32 WD40 Repeat 1 38 38 28.0 2.7e-06 1 CL0186
Cotton_A_29755_CDS 402 439 402 440 PF00400.32 WD40 Repeat 1 37 38 19.5 0.0013 1 CL0186
Cotton_A_29755_CDS 495 530 490 530 PF00400.32 WD40 Repeat 6 38 38 15.3 0.029 1 CL0186
Cotton_A_29704_CDS 546 751 545 752 PF00924.18 MS_channel Family 2 205 206 80.9 8.9e-23 1 No_clan
Cotton_A_10761_CDS 121 408 100 451 PF00201.18 UDPGT Family 115 381 499 78.9 3.5e-22 1 CL0113
Cotton_A_27514_CDS 69 237 68 241 PF00485.18 PRK Domain 2 188 197 80.3 1.5e-22 1 CL0023
Cotton_A_27514_CDS 281 416 256 416 PF01928.21 CYTH Domain 25 179 179 64.1 1.5e-17 1 CL0273
Cotton_A_31187_CDS 43 95 41 98 PF13855.6 LRR_8 Repeat 3 56 61 50.3 1.5e-13 1 CL0022
Cotton_A_22471_CDS 129 213 129 213 PF01985.21 CRS1_YhbY Domain 1 84 84 51.7 7.4e-14 1 No_clan
Cotton_A_22471_CDS 248 331 248 331 PF01985.21 CRS1_YhbY Domain 1 84 84 45.9 4.9e-12 1 No_clan
Cotton_A_31407_CDS 199 275 198 288 PF03040.14 CemA Family 2 75 229 39.8 4.8e-10 1 No_clan
Cotton_A_26473_CDS 122 166 122 167 PF00249.31 Myb_DNA-binding Domain 3 45 46 42.1 7.1e-11 1 CL0123
Cotton_A_04428_CDS 41 204 40 208 PF02776.18 TPP_enzyme_N Domain 2 166 172 166.7 3.4e-49 1 CL0254
Cotton_A_04428_CDS 236 343 229 345 PF00205.22 TPP_enzyme_M Domain 27 135 137 113.9 4.4e-33 1 CL0085
Cotton_A_04428_CDS 362 513 359 513 PF02775.21 TPP_enzyme_C Domain 7 153 153 126.9 5.4e-37 1 CL0254
Cotton_A_16988_CDS 9 178 5 178 PF03936.16 Terpene_synth_C Domain 97 267 267 194.8 1.7e-57 1 CL0613
Cotton_A_10267_CDS 28 67 26 68 PF08263.12 LRRNT_2 Family 4 40 41 38.7 8.8e-10 1 No_clan
Cotton_A_10267_CDS 120 179 119 179 PF13855.6 LRR_8 Repeat 3 61 61 38.5 7.1e-10 1 CL0022
Cotton_A_10267_CDS 331 598 326 599 PF07714.17 Pkinase_Tyr Domain 5 258 259 101.5 4.6e-29 1 CL0016
Cotton_A_06238_CDS 138 264 136 264 PF16719.5 SAWADEE Domain 3 141 141 143.5 4.3e-42 1 CL0049
Cotton_A_09275_CDS 30 76 30 76 PF08263.12 LRRNT_2 Family 1 41 41 26.8 4.6e-06 1 No_clan
Cotton_A_09275_CDS 82 139 81 139 PF13855.6 LRR_8 Repeat 4 61 61 30.6 2.1e-07 1 CL0022
Cotton_A_09275_CDS 176 234 175 235 PF13855.6 LRR_8 Repeat 2 60 61 31.5 1.1e-07 1 CL0022
Cotton_A_09275_CDS 295 310 293 315 PF13516.6 LRR_6 Repeat 3 18 24 10.1 0.71 1 CL0022
Cotton_A_09275_CDS 416 475 415 475 PF13855.6 LRR_8 Repeat 2 61 61 27.8 1.6e-06 1 CL0022
Cotton_A_09275_CDS 487 547 487 547 PF13855.6 LRR_8 Repeat 1 61 61 38.3 8.1e-10 1 CL0022
Cotton_A_09275_CDS 715 984 713 987 PF00069.25 Pkinase Domain 3 259 264 166.1 9.9e-49 1 CL0016
Cotton_A_34773_CDS 4 53 1 53 PF12776.7 Myb_DNA-bind_3 Domain 50 96 96 30.3 6.5e-07 1 CL0123
Cotton_A_05796_CDS 435 521 434 522 PF12936.7 Kri1_C Family 2 88 89 92.3 1.6e-26 1 No_clan
Cotton_A_34686_CDS 225 252 223 253 PF01535.20 PPR Family 3 30 31 17.0 0.0051 1 CL0020
Cotton_A_34686_CDS 257 305 257 305 PF13041.6 PPR_2 Repeat 2 50 50 63.5 1.5e-17 1 CL0020
Cotton_A_34686_CDS 323 355 322 355 PF12854.7 PPR_1 Repeat 2 34 34 53.5 1.4e-14 1 CL0020
Cotton_A_34686_CDS 361 410 361 410 PF13041.6 PPR_2 Repeat 1 50 50 67.0 1.2e-18 1 CL0020
Cotton_A_34686_CDS 431 480 431 480 PF13041.6 PPR_2 Repeat 1 50 50 56.7 2e-15 1 CL0020
Cotton_A_34686_CDS 497 529 497 530 PF12854.7 PPR_1 Repeat 1 33 34 38.0 9.3e-10 1 CL0020
Cotton_A_34686_CDS 571 620 571 620 PF13041.6 PPR_2 Repeat 1 50 50 47.2 1.9e-12 1 CL0020
Cotton_A_34686_CDS 629 686 629 690 PF13812.6 PPR_3 Repeat 1 58 63 40.0 3e-10 1 CL0020
Cotton_A_25879_CDS 45 96 44 97 PF13833.6 EF-hand_8 Domain 2 54 55 58.7 3.8e-16 1 CL0220
Cotton_A_00837_CDS 96 454 94 455 PF01094.28 ANF_receptor Family 3 353 354 255.6 6.9e-76 1 CL0144
Cotton_A_00837_CDS 593 857 529 858 PF00497.20 SBP_bac_3 Domain 62 224 225 64.5 9.3e-18 1 CL0177
Cotton_A_00837_CDS 642 889 639 889 PF00060.26 Lig_chan Family 4 149 149 122.4 1.3e-35 1 CL0030
Cotton_A_23014_CDS 71 407 71 407 PF00225.23 Kinesin Domain 1 333 333 322.5 2.6e-96 1 CL0023
Cotton_A_39051_CDS 60 110 60 111 PF00847.20 AP2 Domain 1 53 54 45.5 6.6e-12 1 CL0081
Cotton_A_00164_CDS 7 55 6 56 PF00253.21 Ribosomal_S14 Family 2 53 54 55.8 2.8e-15 1 No_clan
Cotton_A_20540_CDS 10 32 10 32 PF02493.20 MORN Repeat 1 23 23 19.0 0.00093 1 CL0251
Cotton_A_20540_CDS 33 54 33 55 PF02493.20 MORN Repeat 1 22 23 22.7 5.9e-05 1 CL0251
Cotton_A_20540_CDS 56 78 56 78 PF02493.20 MORN Repeat 1 23 23 20.5 0.0003 1 CL0251
Cotton_A_20540_CDS 79 100 79 101 PF02493.20 MORN Repeat 1 22 23 25.0 1.1e-05 1 CL0251
Cotton_A_20540_CDS 102 122 102 124 PF02493.20 MORN Repeat 1 21 23 19.5 0.00064 1 CL0251
Cotton_A_20540_CDS 125 146 125 147 PF02493.20 MORN Repeat 1 22 23 29.1 5.5e-07 1 CL0251
Cotton_A_20540_CDS 148 169 148 170 PF02493.20 MORN Repeat 1 22 23 21.2 0.00018 1 CL0251
Cotton_A_20540_CDS 407 592 406 670 PF01504.18 PIP5K Family 2 191 274 196.5 4.9e-58 1 CL0016
Cotton_A_11790_CDS 53 104 52 128 PF00717.23 Peptidase_S24 Domain 2 52 70 43.4 2.5e-11 1 CL0299
Cotton_A_39685_CDS 27 345 25 365 PF00743.19 FMO-like Family 6 335 532 114.5 4.3e-33 1 CL0063
Cotton_A_40084_CDS 21 331 19 336 PF00743.19 FMO-like Family 6 335 532 102.4 2e-29 1 CL0063
Cotton_A_31406_CDS 1159 1211 1159 1212 PF14604.6 SH3_9 Domain 1 48 49 33.0 3.9e-08 1 CL0010
Cotton_A_17267_CDS 18 537 17 545 PF03321.13 GH3 Family 2 504 527 571.7 1.6e-171 1 CL0378
Cotton_A_25331_CDS 147 383 143 384 PF00931.22 NB-ARC Domain 5 251 252 160.6 3.7e-47 1 CL0023
Cotton_A_25331_CDS 515 572 514 573 PF13855.6 LRR_8 Repeat 2 59 61 34.2 1.6e-08 1 CL0022
Cotton_A_19542_CDS 193 309 192 311 PF00651.31 BTB Domain 2 109 111 89.1 2.1e-25 1 CL0033
Cotton_A_22755_CDS 1 179 1 179 PF14009.6 DUF4228 Family 1 179 179 109.5 2.4e-31 1 No_clan
Cotton_A_24791_CDS 69 329 69 329 PF04080.13 Per1 Family 1 255 255 302.1 3.7e-90 1 CL0192
Cotton_A_04258_CDS 82 292 81 296 PF05212.12 DUF707 Family 2 217 296 350.1 9.7e-105 1 No_clan
Cotton_A_04258_CDS 293 349 292 351 PF05212.12 DUF707 Family 237 294 296 41.1 1.3e-10 1 No_clan
Cotton_A_26614_CDS 47 90 43 105 PF13812.6 PPR_3 Repeat 5 47 63 19.7 0.00066 1 CL0020
Cotton_A_26614_CDS 95 124 94 124 PF01535.20 PPR Family 2 31 31 20.9 0.00029 1 CL0020
Cotton_A_26614_CDS 126 175 126 175 PF13041.6 PPR_2 Repeat 1 50 50 47.7 1.3e-12 1 CL0020
Cotton_A_26614_CDS 197 245 196 245 PF13041.6 PPR_2 Repeat 2 50 50 58.7 4.9e-16 1 CL0020
Cotton_A_26614_CDS 297 345 296 345 PF13041.6 PPR_2 Repeat 2 50 50 47.1 2e-12 1 CL0020
Cotton_A_26614_CDS 366 389 362 392 PF12854.7 PPR_1 Repeat 6 29 34 26.3 4.4e-06 1 CL0020
Cotton_A_26614_CDS 444 468 443 468 PF01535.20 PPR Family 7 31 31 11.1 0.39 1 CL0020
Cotton_A_26614_CDS 577 604 575 605 PF01535.20 PPR Family 3 30 31 9.5 1.2 1 CL0020
Cotton_A_26614_CDS 607 656 607 656 PF13041.6 PPR_2 Repeat 1 50 50 50.5 1.7e-13 1 CL0020
Cotton_A_26614_CDS 677 725 677 726 PF13041.6 PPR_2 Repeat 1 49 50 45.6 5.7e-12 1 CL0020
Cotton_A_26614_CDS 755 776 752 778 PF01535.20 PPR Family 6 27 31 18.7 0.0014 1 CL0020
Cotton_A_26614_CDS 887 912 886 913 PF01535.20 PPR Family 3 28 31 13.9 0.049 1 CL0020
Cotton_A_02445_CDS 11 81 4 84 PF12796.7 Ank_2 Repeat 12 80 83 35.6 1.1e-08 1 CL0465
Cotton_A_02445_CDS 84 151 78 154 PF12796.7 Ank_2 Repeat 19 80 83 47.6 1.8e-12 1 CL0465
Cotton_A_02445_CDS 157 217 150 223 PF12796.7 Ank_2 Repeat 25 77 83 48.7 8.6e-13 1 CL0465
Cotton_A_02445_CDS 341 455 339 455 PF13962.6 PGG Domain 4 116 116 93.5 7.5e-27 1 No_clan
Cotton_A_28310_CDS 47 114 47 142 PF01627.23 Hpt Family 1 66 85 24.7 2e-05 1 No_clan
Cotton_A_02495_CDS 90 246 88 247 PF01699.24 Na_Ca_ex Family 4 150 151 81.0 8.6e-23 1 No_clan
Cotton_A_02495_CDS 278 416 277 422 PF01699.24 Na_Ca_ex Family 2 145 151 71.1 9.7e-20 1 No_clan
Cotton_A_19125_CDS 45 110 43 161 PF03634.13 TCP Family 3 68 156 91.1 1.1e-25 1 No_clan
Cotton_A_10497_CDS 66 207 59 209 PF00190.22 Cupin_1 Domain 8 149 151 132.8 7.1e-39 1 CL0029
Cotton_A_07233_CDS 77 91 76 93 PF00098.23 zf-CCHC Domain 2 16 18 31.6 1.1e-07 1 CL0511
Cotton_A_07233_CDS 110 125 109 126 PF00098.23 zf-CCHC Domain 2 17 18 27.1 2.8e-06 1 CL0511
Cotton_A_20350_CDS 21 165 20 165 PF04043.15 PMEI Domain 2 154 154 101.4 5.8e-29 1 No_clan
Cotton_A_20350_CDS 217 514 217 515 PF01095.19 Pectinesterase Family 1 297 298 478.1 6.6e-144 1 CL0268
Cotton_A_09042_CDS 124 147 114 147 PF00400.32 WD40 Repeat 13 38 38 12.2 0.27 1 CL0186
Cotton_A_09042_CDS 178 218 172 219 PF00400.32 WD40 Repeat 9 37 38 16.9 0.0089 1 CL0186
Cotton_A_09042_CDS 280 310 275 311 PF00400.32 WD40 Repeat 6 37 38 17.3 0.0065 1 CL0186
Cotton_A_09042_CDS 320 362 319 363 PF00400.32 WD40 Repeat 2 37 38 13.6 0.096 1 CL0186
Cotton_A_03160_CDS 16 96 15 97 PF07011.11 Elf4 Domain 2 82 83 135.1 5.8e-40 1 No_clan
Cotton_A_31437_CDS 24 350 23 350 PF07992.14 Pyr_redox_2 Domain 2 294 294 226.9 3.1e-67 1 CL0063
Cotton_A_31437_CDS 370 479 370 480 PF02852.22 Pyr_redox_dim Domain 1 109 110 105.1 2.3e-30 1 CL0608
Cotton_A_22244_CDS 31 106 29 106 PF03386.14 ENOD93 Family 3 78 78 120.2 2.5e-35 1 No_clan
Cotton_A_28348_CDS 21 87 1 89 PF14380.6 WAK_assoc Domain 29 100 104 37.7 2.7e-09 1 No_clan
Cotton_A_28348_CDS 185 228 184 228 PF13639.6 zf-RING_2 Domain 2 44 44 49.6 3.7e-13 1 CL0229
Cotton_A_03152_CDS 132 298 126 301 PF00326.21 Peptidase_S9 Domain 45 209 212 47.4 1.6e-12 1 CL0028
Cotton_A_13959_CDS 330 596 328 597 PF00664.23 ABC_membrane Family 3 273 274 97.5 1e-27 1 CL0241
Cotton_A_13959_CDS 661 793 661 796 PF00005.27 ABC_tran Domain 1 134 137 76.0 3.9e-21 1 CL0023
Cotton_A_13959_CDS 982 1202 951 1217 PF00664.23 ABC_membrane Family 38 259 274 101.3 7.1e-29 1 CL0241
Cotton_A_13959_CDS 1283 1431 1283 1431 PF00005.27 ABC_tran Domain 1 137 137 98.7 3.9e-28 1 CL0023
Cotton_A_16950_CDS 149 178 148 178 PF01535.20 PPR Family 2 31 31 15.4 0.016 1 CL0020
Cotton_A_16950_CDS 185 211 184 212 PF01535.20 PPR Family 3 29 31 12.1 0.18 1 CL0020
Cotton_A_16950_CDS 214 257 214 261 PF13041.6 PPR_2 Repeat 1 44 50 42.3 6.2e-11 1 CL0020
Cotton_A_16950_CDS 324 348 324 350 PF01535.20 PPR Family 3 27 31 20.5 0.00039 1 CL0020
Cotton_A_16950_CDS 464 478 463 481 PF01535.20 PPR Family 2 16 31 10.9 0.46 1 CL0020
Cotton_A_00162_CDS 47 174 45 174 PF01138.21 RNase_PH Domain 3 132 132 59.4 4.9e-16 1 CL0329
Cotton_A_00162_CDS 211 259 209 287 PF03725.15 RNase_PH_C Domain 3 51 67 25.9 7.5e-06 1 No_clan
Cotton_A_00264_CDS 48 279 46 282 PF01151.18 ELO Family 3 246 250 170.2 5.4e-50 1 No_clan
Cotton_A_15176_CDS 22 592 20 594 PF02724.14 CDC45 Family 3 634 636 528.1 2.9e-158 1 No_clan
Cotton_A_29656_CDS 6 223 5 223 PF03087.14 DUF241 Family 2 234 234 219.7 4.9e-65 1 CL0133
Cotton_A_29057_CDS 397 445 389 446 PF13812.6 PPR_3 Repeat 14 62 63 33.2 4e-08 1 CL0020
Cotton_A_29057_CDS 467 515 466 515 PF13041.6 PPR_2 Repeat 2 50 50 51.0 1.2e-13 1 CL0020
Cotton_A_29693_CDS 28 528 28 528 PF04734.13 Ceramidase_alk Domain 1 507 507 698.1 6.4e-210 1 No_clan
Cotton_A_29693_CDS 530 697 530 697 PF17048.5 Ceramidse_alk_C Domain 1 168 168 143.6 5.1e-42 1 CL0159
Cotton_A_27354_CDS 43 85 43 87 PF12937.7 F-box-like Domain 1 44 48 30.3 2.9e-07 1 CL0271
Cotton_A_27354_CDS 171 216 171 216 PF01344.25 Kelch_1 Repeat 1 46 46 49.7 1.9e-13 1 CL0186
Cotton_A_27354_CDS 219 267 218 267 PF01344.25 Kelch_1 Repeat 2 46 46 45.6 3.7e-12 1 CL0186
Cotton_A_35584_CDS 14 177 13 177 PF00929.24 RNase_T Family 2 165 165 95.2 5.8e-27 1 CL0219
Cotton_A_32315_CDS 297 342 295 343 PF13920.6 zf-C3HC4_3 Domain 4 49 50 56.4 1.9e-15 1 CL0229
Cotton_A_35289_CDS 696 738 695 738 PF13639.6 zf-RING_2 Domain 2 44 44 40.0 3.7e-10 1 CL0229
Cotton_A_12133_CDS 63 322 63 323 PF00685.27 Sulfotransfer_1 Domain 1 266 267 213.0 5.2e-63 1 CL0023
Cotton_A_01866_CDS 19 65 18 65 PF00319.18 SRF-TF Domain 2 48 48 73.8 5.3e-21 1 No_clan
Cotton_A_01999_CDS 35 243 35 243 PF00314.17 Thaumatin Domain 1 214 214 275.4 3.1e-82 1 CL0293
Cotton_A_40062_CDS 66 231 65 232 PF00504.21 Chloroa_b-bind Family 2 160 161 172.1 1.3e-50 1 No_clan
Cotton_A_08943_CDS 166 211 164 211 PF00010.26 HLH Domain 5 53 53 21.8 0.00014 1 No_clan
Cotton_A_08341_CDS 36 308 35 310 PF00248.21 Aldo_ket_red Domain 2 291 294 187.0 4.2e-55 1 No_clan
Cotton_A_07863_CDS 95 377 94 378 PF00483.23 NTP_transferase Family 2 247 248 252.6 4e-75 1 CL0110
Cotton_A_00632_CDS 82 149 82 150 PF05198.16 IF3_N Domain 1 69 70 85.8 1.8e-24 1 No_clan
Cotton_A_00632_CDS 165 242 162 245 PF00707.22 IF3_C Domain 5 83 86 37.6 1.6e-09 1 No_clan
Cotton_A_12385_CDS 118 304 118 304 PF01823.19 MACPF Domain 1 209 209 94.8 7.7e-27 1 CL0293
Cotton_A_19616_CDS 70 170 61 171 PF08240.12 ADH_N Domain 30 108 109 60.8 1e-16 1 CL0296
Cotton_A_19616_CDS 180 240 179 243 PF00107.26 ADH_zinc_N Family 6 64 130 33.3 4e-08 1 CL0063
Cotton_A_17865_CDS 20 120 20 121 PF09816.9 EAF Domain 1 99 100 77.6 7.6e-22 1 No_clan
Cotton_A_16196_CDS 18 212 17 242 PF14661.6 HAUS6_N Family 2 207 229 68.5 6.3e-19 1 No_clan
Cotton_A_36300_CDS 49 106 49 106 PF08246.12 Inhibitor_I29 Domain 1 58 58 68.5 4.8e-19 1 No_clan
Cotton_A_36300_CDS 139 354 139 354 PF00112.23 Peptidase_C1 Domain 1 218 218 273.1 2.2e-81 1 CL0125
Cotton_A_14360_CDS 48 119 29 130 PF03407.16 Nucleotid_trans Family 39 111 212 62.2 6.7e-17 1 CL0110
Cotton_A_15634_CDS 8 71 7 71 PF00808.23 CBFD_NFYB_HMF Domain 2 65 65 68.2 5.6e-19 1 CL0012
Cotton_A_38742_CDS 7 106 7 109 PF05564.12 Auxin_repressed Family 1 114 118 137.2 3.8e-40 1 No_clan
Cotton_A_38117_CDS 113 152 112 152 PF02987.16 LEA_4 Repeat 4 43 44 35.5 7.4e-09 1 No_clan
Cotton_A_38117_CDS 135 164 135 164 PF02987.16 LEA_4 Repeat 15 44 44 27.3 2.9e-06 1 No_clan
Cotton_A_38117_CDS 144 186 143 186 PF02987.16 LEA_4 Repeat 2 44 44 40.0 3e-10 1 No_clan
Cotton_A_38117_CDS 166 201 165 202 PF02987.16 LEA_4 Repeat 2 37 44 34.5 1.5e-08 1 No_clan
Cotton_A_38117_CDS 199 241 198 241 PF02987.16 LEA_4 Repeat 2 44 44 51.0 1.1e-13 1 No_clan
Cotton_A_38117_CDS 249 292 249 292 PF02987.16 LEA_4 Repeat 1 44 44 47.6 1.3e-12 1 No_clan
Cotton_A_38117_CDS 272 313 271 314 PF02987.16 LEA_4 Repeat 2 43 44 27.2 3e-06 1 No_clan
Cotton_A_00988_CDS 77 135 77 135 PF13637.6 Ank_4 Repeat 1 55 55 35.2 1.3e-08 1 CL0465
Cotton_A_39586_CDS 82 470 77 489 PF00067.22 p450 Domain 25 440 463 252.5 7e-75 1 No_clan
Cotton_A_27439_CDS 44 111 44 115 PF00240.23 ubiquitin Domain 1 67 72 35.7 5.5e-09 1 CL0072
Cotton_A_27439_CDS 139 213 138 214 PF02179.16 BAG Family 2 74 75 54.6 1.1e-14 1 No_clan
Cotton_A_04150_CDS 333 432 333 434 PF02362.21 B3 Family 1 99 101 59.2 2.9e-16 1 CL0405
Cotton_A_04150_CDS 566 608 566 609 PF07496.15 zf-CW Domain 1 47 48 43.8 1.9e-11 1 No_clan
Cotton_A_04531_CDS 93 254 92 255 PF00504.21 Chloroa_b-bind Family 2 160 161 158.1 2.7e-46 1 No_clan
Cotton_A_38961_CDS 139 205 139 205 PF00462.24 Glutaredoxin Domain 1 60 60 38.7 8.7e-10 1 CL0172
Cotton_A_05687_CDS 9 103 5 107 PF00022.19 Actin Family 144 270 407 48.2 6e-13 1 CL0108
Cotton_A_03477_CDS 379 786 379 786 PF00962.22 A_deaminase Domain 1 328 328 421.9 1.9e-126 1 CL0034
Cotton_A_24633_CDS 60 113 59 114 PF00046.29 Homeodomain Domain 3 56 57 60.0 1.5e-16 1 CL0123
Cotton_A_24633_CDS 115 156 115 157 PF02183.18 HALZ Coiled-coil 1 42 43 60.4 1.5e-16 1 No_clan
Cotton_A_07654_CDS 25 343 24 344 PF16913.5 PUNUT Family 2 321 322 429.6 7.2e-129 1 CL0184
Cotton_A_14413_CDS 2 26 2 35 PF13176.6 TPR_7 Repeat 1 25 36 19.9 0.0005 1 CL0020
Cotton_A_14413_CDS 45 72 43 73 PF13181.6 TPR_8 Repeat 3 30 34 12.5 0.14 1 CL0020
Cotton_A_27341_CDS 81 357 77 357 PF07714.17 Pkinase_Tyr Domain 5 259 259 166.0 9.7e-49 1 CL0016
Cotton_A_27341_CDS 446 542 446 542 PF01255.19 Prenyltransf Family 1 96 224 86.7 1.6e-24 1 No_clan
Cotton_A_13563_CDS 80 124 79 125 PF12937.7 F-box-like Domain 2 47 48 42.0 6.5e-11 1 CL0271
Cotton_A_13563_CDS 222 274 216 318 PF03048.14 Herpes_UL92 Family 10 61 191 23.0 5.7e-05 1 No_clan
Cotton_A_14131_CDS 12 206 10 208 PF05755.12 REF Family 3 204 206 238.7 5.4e-71 1 No_clan
Cotton_A_02323_CDS 69 155 69 155 PF03330.18 DPBB_1 Domain 1 83 83 76.8 1.1e-21 1 CL0199
Cotton_A_30530_CDS 53 449 52 450 PF00464.19 SHMT Domain 2 398 399 688.4 2.2e-207 1 CL0061
Cotton_A_05775_CDS 49 70 49 72 PF01535.20 PPR Family 4 25 31 17.5 0.0034 1 CL0020
Cotton_A_05775_CDS 77 106 77 107 PF01535.20 PPR Family 1 30 31 18.5 0.0016 1 CL0020
Cotton_A_05775_CDS 112 139 112 140 PF01535.20 PPR Family 1 28 31 13.9 0.05 1 CL0020
Cotton_A_05775_CDS 150 172 148 172 PF01535.20 PPR Family 3 25 31 10.0 0.87 1 CL0020
Cotton_A_05775_CDS 250 374 248 374 PF14432.6 DYW_deaminase Family 3 127 127 123.6 4.3e-36 1 CL0109
Cotton_A_07240_CDS 7 154 7 154 PF08212.12 Lipocalin_2 Domain 1 146 146 174.4 1.3e-51 1 CL0116
Cotton_A_26937_CDS 53 548 52 548 PF02990.16 EMP70 Family 2 519 519 570.9 2.5e-171 1 No_clan
Cotton_A_00895_CDS 36 451 36 451 PF00450.22 Peptidase_S10 Domain 1 419 419 481.9 2.3e-144 1 CL0028
Cotton_A_16876_CDS 209 262 207 269 PF00170.21 bZIP_1 Family 4 57 64 51.3 8.9e-14 1 CL0018
Cotton_A_16876_CDS 277 402 277 403 PF12498.8 bZIP_C Family 1 122 123 134.9 2.7e-39 1 No_clan
Cotton_A_22159_CDS 165 283 165 283 PF13640.6 2OG-FeII_Oxy_3 Domain 1 96 96 75.3 5.4e-21 1 CL0029
Cotton_A_07440_CDS 7 744 7 745 PF05691.12 Raffinose_syn Family 1 749 750 1002.6 8.1e-302 1 CL0058
Cotton_A_11198_CDS 69 331 69 331 PF00685.27 Sulfotransfer_1 Domain 1 267 267 225.8 6.6e-67 1 CL0023
Cotton_A_32334_CDS 114 164 85 166 PF02881.19 SRP54_N Domain 22 73 75 33.6 3.3e-08 1 No_clan
Cotton_A_32334_CDS 186 387 186 388 PF00448.22 SRP54 Domain 1 195 196 244.3 7.9e-73 1 CL0023
Cotton_A_24282_CDS 38 80 37 80 PF08263.12 LRRNT_2 Family 2 41 41 42.4 6.1e-11 1 No_clan
Cotton_A_24282_CDS 403 661 401 661 PF07714.17 Pkinase_Tyr Domain 4 259 259 102.9 1.7e-29 1 CL0016
Cotton_A_34047_CDS 33 69 31 70 PF08263.12 LRRNT_2 Family 5 40 41 31.8 1.3e-07 1 No_clan
Cotton_A_34047_CDS 147 206 146 206 PF13855.6 LRR_8 Repeat 2 61 61 38.3 8.4e-10 1 CL0022
Cotton_A_28424_CDS 131 251 131 252 PF09335.11 SNARE_assoc Family 1 119 120 57.4 1.9e-15 1 No_clan
Cotton_A_13441_CDS 16 165 15 165 PF04949.13 Transcrip_act Family 2 154 154 254.9 2.3e-76 1 No_clan
Cotton_A_24171_CDS 89 154 89 154 PF00191.20 Annexin Family 1 66 66 47.0 2e-12 1 No_clan
Cotton_A_24171_CDS 173 233 172 238 PF00191.20 Annexin Family 2 61 66 42.0 7.4e-11 1 No_clan
Cotton_A_19073_CDS 12 555 12 556 PF03321.13 GH3 Family 1 526 527 600.8 2.5e-180 1 CL0378
Cotton_A_40363_CDS 74 177 74 177 PF03168.13 LEA_2 Domain 1 101 101 32.7 8.1e-08 1 CL0159
Cotton_A_30050_CDS 51 120 51 121 PF00076.22 RRM_1 Domain 1 69 70 62.2 2.9e-17 1 CL0221
Cotton_A_34821_CDS 38 111 37 117 PF03819.17 MazG Domain 2 66 74 30.8 2.4e-07 1 CL0231
Cotton_A_39660_CDS 39 54 38 54 PF00098.23 zf-CCHC Domain 2 17 18 22.1 0.00011 1 CL0511
Cotton_A_26562_CDS 19 59 18 59 PF13923.6 zf-C3HC4_2 Domain 2 40 40 29.9 3.5e-07 1 CL0229
Cotton_A_14309_CDS 169 217 165 217 PF08711.11 Med26 Domain 3 53 53 44.3 1.3e-11 1 No_clan
Cotton_A_09444_CDS 5 368 5 368 PF03223.15 V-ATPase_C Family 1 370 370 422.8 1.4e-126 1 No_clan
Cotton_A_35310_CDS 18 97 16 139 PF13837.6 Myb_DNA-bind_4 Domain 3 78 90 52.2 6.1e-14 1 CL0123
Cotton_A_28092_CDS 7 144 5 145 PF05755.12 REF Family 74 205 206 119.1 2.2e-34 1 No_clan
Cotton_A_05084_CDS 39 77 37 77 PF08263.12 LRRNT_2 Family 3 41 41 37.6 2e-09 1 No_clan
Cotton_A_05084_CDS 129 188 128 188 PF13855.6 LRR_8 Repeat 2 61 61 39.9 2.6e-10 1 CL0022
Cotton_A_05084_CDS 472 493 472 493 PF00560.33 LRR_1 Repeat 2 23 23 11.0 0.55 1 CL0022
Cotton_A_27951_CDS 139 412 136 416 PF07714.17 Pkinase_Tyr Domain 4 255 259 170.7 3.5e-50 1 CL0016
Cotton_A_26571_CDS 152 196 149 197 PF00010.26 HLH Domain 5 52 53 32.1 7.9e-08 1 No_clan
Cotton_A_14225_CDS 47 99 46 100 PF14416.6 PMR5N Domain 2 52 53 78.7 3e-22 1 No_clan
Cotton_A_14225_CDS 101 366 101 367 PF13839.6 PC-Esterase Family 1 282 283 284.9 8.5e-85 1 CL0264
Cotton_A_00934_CDS 117 174 116 179 PF01842.25 ACT Domain 2 61 67 31.4 1.2e-07 1 CL0070
Cotton_A_37261_CDS 103 400 103 401 PF02383.18 Syja_N Family 1 319 320 268.9 6.4e-80 1 CL0031
Cotton_A_17564_CDS 41 98 41 98 PF08246.12 Inhibitor_I29 Domain 1 58 58 67.7 8.7e-19 1 No_clan
Cotton_A_17564_CDS 125 341 125 341 PF00112.23 Peptidase_C1 Domain 1 218 218 282.3 3.4e-84 1 CL0125
Cotton_A_08037_CDS 69 97 68 97 PF00132.24 Hexapep Repeat 8 36 36 19.4 0.00063 1 CL0536
Cotton_A_15269_CDS 242 409 242 409 PF06911.12 Senescence Family 1 183 183 151.4 3.3e-44 1 No_clan
Cotton_A_05251_CDS 469 535 469 536 PF03847.13 TFIID_20kDa Domain 1 67 68 110.3 4.7e-32 1 CL0012
Cotton_A_32579_CDS 71 128 71 140 PF00076.22 RRM_1 Domain 1 57 70 65.2 3.4e-18 1 CL0221
Cotton_A_29998_CDS 9 246 9 265 PF01370.21 Epimerase Family 1 231 241 70.2 1.7e-19 1 CL0063
Cotton_A_21301_CDS 53 135 39 136 PF00083.24 Sugar_tr Family 4 97 452 25.9 4.3e-06 1 CL0015
Cotton_A_21301_CDS 136 438 135 440 PF00083.24 Sugar_tr Family 123 450 452 215.7 1.1e-63 1 CL0015
Cotton_A_08494_CDS 26 175 25 175 PF04535.12 DUF588 Domain 2 150 150 155.8 6.7e-46 1 CL0396
Cotton_A_14884_CDS 5 445 4 445 PF02458.15 Transferase Family 2 434 434 280.2 2.4e-83 1 CL0149
Cotton_A_38023_CDS 4 125 2 125 PF03004.14 Transposase_24 Family 3 131 142 76.3 2.4e-21 1 No_clan
Cotton_A_18559_CDS 26 84 21 84 PF02953.15 zf-Tim10_DDP Domain 6 64 64 65.0 3.6e-18 1 No_clan
Cotton_A_16017_CDS 124 194 124 194 PF00076.22 RRM_1 Domain 1 70 70 73.2 1.1e-20 1 CL0221
Cotton_A_16017_CDS 227 297 227 297 PF00076.22 RRM_1 Domain 1 70 70 56.8 1.5e-15 1 CL0221
Cotton_A_34972_CDS 13 108 13 109 PF13943.6 WPP Domain 1 98 99 116.9 4.3e-34 1 No_clan
Cotton_A_34972_CDS 213 231 211 232 PF13516.6 LRR_6 Repeat 5 23 24 12.3 0.14 1 CL0022
Cotton_A_34972_CDS 321 344 321 344 PF13516.6 LRR_6 Repeat 1 24 24 12.2 0.14 1 CL0022
Cotton_A_34972_CDS 407 427 406 429 PF13516.6 LRR_6 Repeat 2 22 24 16.2 0.0079 1 CL0022
Cotton_A_02700_CDS 114 132 113 132 PF00612.27 IQ Motif 2 20 21 22.6 5.4e-05 1 CL0220
Cotton_A_02700_CDS 136 153 135 155 PF00612.27 IQ Motif 2 19 21 17.2 0.003 1 CL0220
Cotton_A_02700_CDS 516 608 498 611 PF13178.6 DUF4005 Family 2 90 93 59.3 4.5e-16 1 No_clan
Cotton_A_06422_CDS 8 121 8 121 PF16906.5 Ribosomal_L26 Family 1 82 82 128.8 8.1e-38 1 No_clan
Cotton_A_06422_CDS 51 82 51 82 PF00467.29 KOW Family 1 32 32 37.5 1.5e-09 1 CL0107
Cotton_A_21138_CDS 2 84 1 88 PF12776.7 Myb_DNA-bind_3 Domain 9 92 96 62.4 6.2e-17 1 CL0123
Cotton_A_09227_CDS 254 499 229 501 PF00497.20 SBP_bac_3 Domain 18 155 225 38.5 8.2e-10 1 CL0177
Cotton_A_09227_CDS 349 456 348 502 PF00060.26 Lig_chan Family 2 121 149 36.3 4.5e-09 1 CL0030
Cotton_A_20010_CDS 49 145 48 157 PF01018.22 GTP1_OBG Domain 2 101 155 94.3 5.5e-27 1 No_clan
Cotton_A_20010_CDS 306 432 306 432 PF01926.23 MMR_HSR1 Family 1 114 114 83.8 8.7e-24 1 CL0023
Cotton_A_25096_CDS 30 157 29 158 PF12353.8 eIF3g Family 2 124 125 122.9 1e-35 1 CL0511
Cotton_A_25096_CDS 211 277 211 281 PF00076.22 RRM_1 Domain 1 66 70 74.4 4.7e-21 1 CL0221
Cotton_A_37267_CDS 65 213 64 214 PF00190.22 Cupin_1 Domain 3 150 151 173.5 2.1e-51 1 CL0029
Cotton_A_31904_CDS 74 123 74 123 PF00415.18 RCC1 Repeat 1 50 50 52.7 4.9e-14 1 CL0186
Cotton_A_31904_CDS 126 172 126 174 PF00415.18 RCC1 Repeat 1 48 50 29.9 6.3e-07 1 CL0186
Cotton_A_31904_CDS 183 242 181 242 PF00415.18 RCC1 Repeat 5 50 50 37.0 3.8e-09 1 CL0186
Cotton_A_31904_CDS 245 292 245 297 PF00415.18 RCC1 Repeat 1 44 50 31.9 1.6e-07 1 CL0186
Cotton_A_31904_CDS 351 397 347 397 PF00415.18 RCC1 Repeat 6 50 50 36.4 6.1e-09 1 CL0186
Cotton_A_23831_CDS 15 134 9 139 PF03492.15 Methyltransf_7 Family 7 125 334 152.6 1.5e-44 1 CL0063
Cotton_A_26016_CDS 89 524 89 524 PF12899.7 Glyco_hydro_100 Domain 1 435 435 717.7 4.1e-216 1 CL0059
Cotton_A_31043_CDS 53 309 53 309 PF00108.23 Thiolase_N Domain 1 260 260 255.4 5.5e-76 1 CL0046
Cotton_A_31043_CDS 318 440 316 440 PF02803.18 Thiolase_C Domain 3 123 123 162.9 2.2e-48 1 CL0046
Cotton_A_07341_CDS 54 555 54 557 PF00118.24 Cpn60_TCP1 Family 1 489 491 286.9 2.7e-85 1 No_clan
Cotton_A_15069_CDS 73 326 71 326 PF00069.25 Pkinase Domain 3 264 264 225.0 1e-66 1 CL0016
Cotton_A_07311_CDS 13 447 13 460 PF00067.22 p450 Domain 1 436 463 192.9 8.4e-57 1 No_clan
Cotton_A_33068_CDS 40 243 39 243 PF01027.20 Bax1-I Family 2 207 207 159.2 1.2e-46 1 CL0453
Cotton_A_14276_CDS 63 204 41 206 PF11947.8 DUF3464 Family 16 148 150 174.5 1.1e-51 1 No_clan
Cotton_A_26005_CDS 153 197 150 198 PF00010.26 HLH Domain 5 52 53 31.1 1.6e-07 1 No_clan
Cotton_A_27716_CDS 72 255 72 255 PF01214.18 CK_II_beta Domain 1 182 182 269.5 1.3e-80 1 No_clan
Cotton_A_14121_CDS 100 134 75 142 PF12796.7 Ank_2 Repeat 48 75 83 28.0 2.4e-06 1 CL0465
Cotton_A_14121_CDS 165 190 163 191 PF13606.6 Ank_3 Repeat 3 28 31 21.7 0.00018 1 CL0465
Cotton_A_14121_CDS 215 289 210 296 PF12796.7 Ank_2 Repeat 12 75 83 42.9 5.6e-11 1 CL0465
Cotton_A_27208_CDS 34 150 2 150 PF00257.19 Dehydrin Family 64 164 164 127.2 8.8e-37 1 No_clan
Cotton_A_07879_CDS 31 272 29 278 PF00141.23 peroxidase Domain 3 223 229 234.3 1.4e-69 1 CL0617
Cotton_A_26700_CDS 87 132 86 132 PF13639.6 zf-RING_2 Domain 2 44 44 35.7 8.2e-09 1 CL0229
Cotton_A_26700_CDS 279 462 279 463 PF00092.28 VWA Domain 1 174 175 85.7 4.2e-24 1 CL0128
Cotton_A_26700_CDS 630 702 630 703 PF14624.6 Vwaint Domain 1 69 70 81.4 3.8e-23 1 No_clan
Cotton_A_03386_CDS 26 113 25 113 PF04116.13 FA_hydroxylase Family 2 89 133 62.0 7.2e-17 1 No_clan
Cotton_A_10248_CDS 21 208 21 213 PF00106.25 adh_short Domain 1 189 195 151.9 1.4e-44 1 CL0063
Cotton_A_02967_CDS 197 255 196 255 PF13855.6 LRR_8 Repeat 2 61 61 35.3 7.3e-09 1 CL0022
Cotton_A_02967_CDS 374 645 371 645 PF07714.17 Pkinase_Tyr Domain 5 259 259 91.3 5.9e-26 1 CL0016
Cotton_A_21504_CDS 8 57 2 57 PF14111.6 DUF4283 Domain 96 145 145 31.8 9e-08 1 No_clan
Cotton_A_09127_CDS 32 371 32 371 PF01237.18 Oxysterol_BP Family 1 373 373 354.6 5.3e-106 1 No_clan
Cotton_A_41046_CDS 286 546 285 546 PF01803.16 LIM_bind Family 2 241 241 191.3 2e-56 1 No_clan
Cotton_A_24655_CDS 110 153 109 153 PF13639.6 zf-RING_2 Domain 2 44 44 45.7 6.2e-12 1 CL0229
Cotton_A_13240_CDS 71 188 70 194 PF03168.13 LEA_2 Domain 2 95 101 26.3 8e-06 1 CL0159
Cotton_A_32423_CDS 164 207 162 208 PF02234.19 CDI Family 4 48 49 56.8 1.9e-15 1 No_clan
Cotton_A_06290_CDS 35 906 34 907 PF11145.8 DUF2921 Family 2 893 894 762.4 5.5e-229 1 No_clan
Cotton_A_39675_CDS 46 96 6 97 PF14510.6 ABC_trans_N Domain 32 80 81 31.8 1.7e-07 1 No_clan
Cotton_A_01463_CDS 116 500 50 504 PF00083.24 Sugar_tr Family 47 447 452 107.7 6.6e-31 1 CL0015
Cotton_A_13407_CDS 6 161 1 162 PF00931.22 NB-ARC Domain 94 251 252 102.9 1.6e-29 1 CL0023
Cotton_A_01488_CDS 118 212 100 249 PF00644.20 PARP Family 45 134 195 33.1 3.8e-08 1 CL0084
Cotton_A_01488_CDS 268 331 267 333 PF12174.8 RST Domain 2 65 67 89.9 7.4e-26 1 No_clan
Cotton_A_37100_CDS 162 204 161 204 PF13639.6 zf-RING_2 Domain 2 44 44 47.6 1.5e-12 1 CL0229
Cotton_A_20603_CDS 27 77 27 89 PF04431.13 Pec_lyase_N Family 1 52 56 62.8 2.7e-17 1 No_clan
Cotton_A_20603_CDS 186 369 176 369 PF00544.19 Pec_lyase_C Domain 30 211 211 71.0 1e-19 1 CL0268
Cotton_A_06575_CDS 50 157 50 158 PF00168.30 C2 Domain 1 102 103 42.1 8.3e-11 1 CL0154
Cotton_A_33286_CDS 183 256 183 257 PF03110.14 SBP Domain 1 74 75 111.7 1.5e-32 1 No_clan
Cotton_A_26115_CDS 19 95 18 95 PF05922.16 Inhibitor_I9 Domain 2 82 82 49.3 5.8e-13 1 CL0570
Cotton_A_26115_CDS 116 570 115 570 PF00082.22 Peptidase_S8 Domain 2 298 298 148.8 2e-43 1 No_clan
Cotton_A_26115_CDS 626 719 626 722 PF17766.1 fn3_6 Domain 1 94 99 73.0 1.7e-20 1 CL0159
Cotton_A_26115_CDS 719 779 718 780 PF05922.16 Inhibitor_I9 Domain 2 66 82 32.7 8.7e-08 1 CL0570
Cotton_A_12550_CDS 12 118 3 144 PF07714.17 Pkinase_Tyr Domain 95 202 259 45.3 6.2e-12 1 CL0016
Cotton_A_12267_CDS 18 106 10 109 PF00085.20 Thioredoxin Domain 12 100 103 87.5 5e-25 1 CL0172
Cotton_A_12267_CDS 137 236 135 238 PF00085.20 Thioredoxin Domain 3 101 103 103.0 7.2e-30 1 CL0172
Cotton_A_12847_CDS 19 74 17 77 PF05030.12 SSXT Family 3 58 62 75.9 1.4e-21 1 No_clan
Cotton_A_35111_CDS 79 132 79 133 PF14416.6 PMR5N Domain 1 52 53 76.0 2e-21 1 No_clan
Cotton_A_35111_CDS 134 421 134 422 PF13839.6 PC-Esterase Family 1 282 283 297.1 1.7e-88 1 CL0264
Cotton_A_10802_CDS 4 97 4 107 PF02362.21 B3 Family 1 92 101 41.0 1.3e-10 1 CL0405
Cotton_A_08096_CDS 21 100 21 101 PF03810.19 IBN_N Family 1 73 74 41.1 1.3e-10 1 CL0020
Cotton_A_08096_CDS 379 435 379 435 PF13513.6 HEAT_EZ Repeat 1 55 55 35.7 8.5e-09 1 CL0020
Cotton_A_23622_CDS 3 283 3 283 PF13266.6 DUF4057 Family 1 299 299 468.1 1.5e-140 1 No_clan
Cotton_A_36130_CDS 64 253 64 253 PF04427.18 Brix Domain 1 193 193 129.0 2.2e-37 1 CL0458
Cotton_A_22932_CDS 98 197 97 198 PF03168.13 LEA_2 Domain 2 100 101 39.3 7.5e-10 1 CL0159
Cotton_A_16256_CDS 4 81 4 81 PF14569.6 zf-UDP Domain 1 78 78 144.8 6.2e-43 1 CL0229
Cotton_A_19402_CDS 35 200 32 239 PF00753.27 Lactamase_B Domain 4 159 197 77.3 1.6e-21 1 CL0381
Cotton_A_19402_CDS 258 379 258 379 PF10996.8 Beta-Casp Domain 1 110 110 97.9 4.1e-28 1 CL0023
Cotton_A_19402_CDS 394 447 393 457 PF07521.12 RMMBL Motif 2 55 62 67.7 6.3e-19 1 CL0398
Cotton_A_19402_CDS 489 688 488 688 PF11718.8 CPSF73-100_C Domain 2 217 217 162.0 1.4e-47 1 No_clan
Cotton_A_20303_CDS 1 127 1 135 PF03358.15 FMN_red Domain 19 145 155 40.4 2.4e-10 1 CL0042
Cotton_A_32479_CDS 22 183 22 184 PF00071.22 Ras Domain 1 161 162 184.9 7.6e-55 1 CL0023
Cotton_A_02627_CDS 31 61 17 62 PF02319.20 E2F_TDP Domain 40 70 71 49.3 3.7e-13 1 CL0123
Cotton_A_02627_CDS 55 116 36 125 PF16421.5 E2F_CC-MB Domain 34 86 95 60.3 1.7e-16 1 No_clan
Cotton_A_19315_CDS 2 117 1 120 PF00190.22 Cupin_1 Domain 32 148 151 105.6 1.7e-30 1 CL0029
Cotton_A_01281_CDS 37 238 35 272 PF00743.19 FMO-like Family 6 222 532 83.5 1.1e-23 1 CL0063
Cotton_A_27904_CDS 40 184 40 196 PF03140.15 DUF247 Family 1 159 397 95.3 4.6e-27 1 No_clan
Cotton_A_25943_CDS 374 414 373 432 PF01843.19 DIL Family 2 47 104 26.2 7.3e-06 1 No_clan
Cotton_A_31077_CDS 319 403 310 412 PF03763.13 Remorin_C Family 12 96 107 85.6 1.8e-24 1 No_clan
Cotton_A_16150_CDS 723 762 723 763 PF01465.20 GRIP Family 1 43 44 48.0 8.4e-13 1 No_clan
Cotton_A_19318_CDS 1 179 1 197 PF00067.22 p450 Domain 270 446 463 187.4 4.1e-55 1 No_clan
Cotton_A_17274_CDS 141 347 139 368 PF00931.22 NB-ARC Domain 3 224 252 166.2 7.7e-49 1 CL0023
Cotton_A_05055_CDS 28 504 27 504 PF00083.24 Sugar_tr Family 2 452 452 358.4 5.7e-107 1 CL0015
Cotton_A_14718_CDS 95 314 90 315 PF12146.8 Hydrolase_4 Family 7 227 239 47.1 1.7e-12 1 CL0028
Cotton_A_26992_CDS 28 105 28 113 PF00234.22 Tryp_alpha_amyl Family 1 84 87 32.0 1.2e-07 1 CL0482
Cotton_A_11563_CDS 131 263 130 263 PF07039.11 DUF1325 Domain 2 132 132 115.5 1.7e-33 1 CL0049
Cotton_A_24312_CDS 38 84 37 86 PF13415.6 Kelch_3 Domain 2 47 49 32.3 8.2e-08 1 CL0186
Cotton_A_24312_CDS 127 169 127 172 PF13418.6 Kelch_4 Repeat 1 42 49 34.9 1.2e-08 1 CL0186
Cotton_A_24312_CDS 190 239 190 239 PF13415.6 Kelch_3 Domain 1 49 49 37.9 1.5e-09 1 CL0186
Cotton_A_24312_CDS 242 287 240 288 PF13415.6 Kelch_3 Domain 3 47 49 27.5 2.7e-06 1 CL0186
Cotton_A_01896_CDS 1217 1300 1217 1300 PF00226.31 DnaJ Domain 1 63 63 57.0 1.5e-15 1 CL0392
Cotton_A_37353_CDS 27 85 26 85 PF00137.21 ATP-synt_C Family 2 60 60 54.8 8.6e-15 1 No_clan
Cotton_A_37353_CDS 110 169 110 169 PF00137.21 ATP-synt_C Family 1 60 60 39.0 7.7e-10 1 No_clan
Cotton_A_37072_CDS 23 163 23 174 PF00071.22 Ras Domain 1 127 162 40.3 2.3e-10 1 CL0023
Cotton_A_05304_CDS 50 202 50 207 PF01652.18 IF4E Domain 1 154 159 171.3 1.3e-50 1 CL0625
Cotton_A_05304_CDS 578 713 549 722 PF01544.18 CorA Family 151 287 292 39.9 3e-10 1 No_clan
Cotton_A_30927_CDS 434 804 434 805 PF03514.14 GRAS Family 1 373 374 395.9 1.6e-118 1 CL0063
Cotton_A_27770_CDS 34 79 34 88 PF04145.15 Ctr Family 1 48 148 31.4 2.5e-07 1 No_clan
Cotton_A_27770_CDS 85 134 74 134 PF04145.15 Ctr Family 97 148 148 45.6 1.1e-11 1 No_clan
Cotton_A_11225_CDS 18 138 13 139 PF00134.23 Cyclin_N Domain 6 126 127 69.0 3.1e-19 1 CL0065
Cotton_A_04781_CDS 83 149 83 152 PF00076.22 RRM_1 Domain 1 66 70 42.2 5.1e-11 1 CL0221
Cotton_A_04781_CDS 176 241 176 247 PF00076.22 RRM_1 Domain 1 64 70 53.7 1.3e-14 1 CL0221
Cotton_A_04781_CDS 284 348 284 348 PF00076.22 RRM_1 Domain 1 70 70 62.7 2.1e-17 1 CL0221
Cotton_A_32443_CDS 35 148 34 150 PF07732.15 Cu-oxidase_3 Domain 2 117 119 123.2 5.4e-36 1 CL0026
Cotton_A_32443_CDS 161 297 160 298 PF00394.22 Cu-oxidase Domain 2 158 159 138.6 1.9e-40 1 CL0026
Cotton_A_32443_CDS 379 515 378 518 PF07731.14 Cu-oxidase_2 Domain 2 134 137 95.5 2.1e-27 1 CL0026
Cotton_A_13409_CDS 10 78 9 79 PF00076.22 RRM_1 Domain 2 69 70 74.6 4.1e-21 1 CL0221
Cotton_A_13409_CDS 123 139 122 139 PF00098.23 zf-CCHC Domain 2 18 18 33.1 3.6e-08 1 CL0511
Cotton_A_19560_CDS 66 206 59 207 PF00190.22 Cupin_1 Domain 8 150 151 159.1 5.8e-47 1 CL0029
Cotton_A_07944_CDS 5 87 5 122 PF18052.1 Rx_N Domain 1 83 93 81.8 3.1e-23 1 No_clan
Cotton_A_07944_CDS 171 416 169 419 PF00931.22 NB-ARC Domain 3 249 252 199.2 6.4e-59 1 CL0023
Cotton_A_27505_CDS 63 231 60 249 PF00067.22 p450 Domain 277 445 463 184.8 2.5e-54 1 No_clan
Cotton_A_16473_CDS 113 459 112 465 PF00224.21 PK Family 2 342 348 316.3 2e-94 1 CL0151
Cotton_A_16473_CDS 483 582 483 591 PF02887.16 PK_C Domain 1 103 117 81.9 4e-23 1 No_clan
Cotton_A_09477_CDS 17 208 16 209 PF01813.17 ATP-synt_D Family 2 195 196 241.8 5.4e-72 1 No_clan
Cotton_A_11608_CDS 32 451 32 462 PF00067.22 p450 Domain 1 443 463 227.1 3.7e-67 1 No_clan
Cotton_A_00634_CDS 8 102 3 103 PF01399.27 PCI Domain 10 104 105 64.9 8.2e-18 1 CL0123
Cotton_A_27089_CDS 51 105 49 107 PF02701.15 zf-Dof Family 3 57 59 106.6 5.2e-31 1 No_clan
Cotton_A_04001_CDS 95 531 95 531 PF12899.7 Glyco_hydro_100 Domain 1 435 435 707.6 4.9e-213 1 CL0059
Cotton_A_11457_CDS 56 130 55 136 PF13259.6 DUF4050 Family 2 69 183 31.1 2.6e-07 1 No_clan
Cotton_A_11457_CDS 132 170 129 171 PF13259.6 DUF4050 Family 144 182 183 38.0 2.1e-09 1 No_clan
Cotton_A_20870_CDS 77 206 74 206 PF00134.23 Cyclin_N Domain 4 127 127 99.8 9.3e-29 1 CL0065
Cotton_A_20870_CDS 208 311 208 322 PF02984.19 Cyclin_C Domain 1 98 119 28.0 1.8e-06 1 CL0065
Cotton_A_01954_CDS 369 411 365 412 PF00010.26 HLH Domain 7 52 53 37.2 2e-09 1 No_clan
Cotton_A_05252_CDS 80 192 80 202 PF00561.20 Abhydrolase_1 Domain 1 118 257 34.9 1.2e-08 1 CL0028
Cotton_A_05252_CDS 259 315 217 315 PF00561.20 Abhydrolase_1 Domain 206 257 257 26.3 5.4e-06 1 CL0028
Cotton_A_35293_CDS 179 362 174 364 PF00544.19 Pec_lyase_C Domain 28 209 211 76.2 2.6e-21 1 CL0268
Cotton_A_24730_CDS 183 331 183 331 PF01590.26 GAF Domain 1 133 133 51.9 1.1e-13 1 CL0161
Cotton_A_24730_CDS 370 432 367 432 PF00512.25 HisKA Domain 4 67 67 32.4 7.1e-08 1 CL0025
Cotton_A_24730_CDS 479 600 479 615 PF02518.26 HATPase_c Domain 1 102 112 33.8 4e-08 1 CL0025
Cotton_A_24730_CDS 641 745 641 754 PF00072.24 Response_reg Domain 1 102 112 67.3 1.2e-18 1 CL0304
Cotton_A_39149_CDS 103 516 103 520 PF00854.21 PTR2 Family 1 391 395 332.8 2.5e-99 1 CL0015
Cotton_A_04898_CDS 7 31 7 31 PF06943.12 zf-LSD1 Domain 1 25 25 44.3 1.1e-11 1 No_clan
Cotton_A_04898_CDS 43 67 43 67 PF06943.12 zf-LSD1 Domain 1 25 25 47.3 1.3e-12 1 No_clan
Cotton_A_04898_CDS 81 105 81 105 PF06943.12 zf-LSD1 Domain 1 25 25 51.8 5.3e-14 1 No_clan
Cotton_A_20488_CDS 110 340 110 342 PF14249.6 Tocopherol_cycl Family 1 210 337 275.0 8.3e-82 1 No_clan
Cotton_A_13549_CDS 10 65 10 66 PF00412.22 LIM Domain 1 57 58 49.2 4.5e-13 1 CL0167
Cotton_A_13549_CDS 107 162 107 163 PF00412.22 LIM Domain 1 57 58 43.2 3.3e-11 1 CL0167
Cotton_A_38134_CDS 1 154 1 154 PF00407.19 Bet_v_1 Domain 1 151 151 71.6 6.3e-20 1 CL0209
Cotton_A_27040_CDS 200 282 198 284 PF00439.25 Bromodomain Domain 3 82 84 57.3 1.2e-15 1 No_clan
Cotton_A_04158_CDS 2 231 1 231 PF00069.25 Pkinase Domain 26 264 264 214.7 1.4e-63 1 CL0016
Cotton_A_04158_CDS 277 330 275 330 PF03822.14 NAF Domain 3 54 54 65.9 2.7e-18 1 CL0573
Cotton_A_18742_CDS 1 253 1 254 PF03159.18 XRN_N Family 1 241 242 328.9 1.7e-98 1 CL0280
Cotton_A_18742_CDS 262 276 261 277 PF00098.23 zf-CCHC Domain 2 16 18 22.4 8.7e-05 1 CL0511
Cotton_A_18742_CDS 326 820 325 820 PF17846.1 XRN_M Domain 2 443 443 559.2 6.7e-168 1 No_clan
Cotton_A_12069_CDS 83 240 83 240 PF04759.13 DUF617 Family 1 163 163 206.0 3.6e-61 1 No_clan
Cotton_A_15128_CDS 3 97 1 97 PF07714.17 Pkinase_Tyr Domain 182 259 259 28.1 1.1e-06 1 CL0016
Cotton_A_10570_CDS 30 155 30 155 PF17246.2 CDC24_OB1 Domain 1 121 121 153.2 3e-45 1 CL0021
Cotton_A_10570_CDS 160 287 160 287 PF17245.2 CDC24_OB2 Domain 1 129 129 123.8 6.2e-36 1 CL0021
Cotton_A_10570_CDS 407 628 407 628 PF17244.2 CDC24_OB3 Domain 1 225 225 243.7 1.8e-72 1 CL0021
Cotton_A_20500_CDS 22 88 20 90 PF00111.27 Fer2 Domain 3 76 78 29.2 6.8e-07 1 CL0486
Cotton_A_20500_CDS 99 184 99 185 PF01799.20 Fer2_2 Domain 1 75 76 85.2 2.4e-24 1 CL0486
Cotton_A_20500_CDS 248 427 239 427 PF00941.21 FAD_binding_5 Family 5 171 171 132.2 1.5e-38 1 CL0077
Cotton_A_20500_CDS 445 548 444 550 PF03450.17 CO_deh_flav_C Domain 2 101 103 69.8 1.8e-19 1 CL0233
Cotton_A_33708_CDS 35 163 33 163 PF04535.12 DUF588 Domain 3 150 150 89.9 1.3e-25 1 CL0396
Cotton_A_09766_CDS 6 49 5 49 PF12515.8 CaATP_NAI Family 2 45 45 71.3 3.7e-20 1 No_clan
Cotton_A_09766_CDS 119 186 117 186 PF00690.26 Cation_ATPase_N Domain 4 69 69 46.8 1.7e-12 1 No_clan
Cotton_A_27855_CDS 8 553 8 553 PF00862.19 Sucrose_synth Family 1 548 548 932.0 9.1e-281 1 CL0113
Cotton_A_27855_CDS 567 739 557 742 PF00534.20 Glycos_transf_1 Family 12 168 172 110.3 7.3e-32 1 CL0113
Cotton_A_01263_CDS 67 174 64 193 PF12146.8 Hydrolase_4 Family 4 113 239 28.6 7.9e-07 1 CL0028
Cotton_A_31201_CDS 58 178 2 178 PF08613.11 Cyclin Family 40 161 161 108.9 3.2e-31 1 CL0065
Cotton_A_02433_CDS 52 358 46 361 PF04258.13 Peptidase_A22B Family 8 281 284 221.0 2.3e-65 1 CL0130
Cotton_A_14329_CDS 72 482 72 483 PF03140.15 DUF247 Family 1 396 397 254.5 2e-75 1 No_clan
Cotton_A_06748_CDS 17 64 17 64 PF00249.31 Myb_DNA-binding Domain 1 46 46 61.6 5.8e-17 1 CL0123
Cotton_A_23514_CDS 96 167 96 167 PF04640.14 PLATZ Family 1 82 82 97.6 4.9e-28 1 No_clan
Cotton_A_15628_CDS 27 207 26 216 PF00445.18 Ribonuclease_T2 Domain 2 178 182 106.5 1.8e-30 1 No_clan
Cotton_A_06108_CDS 56 300 54 300 PF12146.8 Hydrolase_4 Family 3 239 239 184.9 1.5e-54 1 CL0028
Cotton_A_36705_CDS 39 97 38 97 PF02704.14 GASA Family 2 60 60 76.3 1.5e-21 1 No_clan
Cotton_A_35059_CDS 8 39 7 39 PF14369.6 zinc_ribbon_9 Domain 2 35 35 40.9 1.8e-10 1 CL0167
Cotton_A_35059_CDS 180 222 179 222 PF13639.6 zf-RING_2 Domain 2 44 44 47.4 1.8e-12 1 CL0229
Cotton_A_08693_CDS 1 108 1 111 PF00069.25 Pkinase Domain 164 260 264 38.2 1e-09 1 CL0016
Cotton_A_04879_CDS 52 98 49 99 PF00847.20 AP2 Domain 5 53 54 40.4 2.5e-10 1 CL0081
Cotton_A_07689_CDS 14 71 13 71 PF00226.31 DnaJ Domain 2 63 63 78.0 4.5e-22 1 CL0392
Cotton_A_07689_CDS 122 344 121 344 PF01556.18 DnaJ_C Domain 2 148 148 143.4 5.3e-42 1 No_clan
Cotton_A_07689_CDS 148 214 148 214 PF00684.19 DnaJ_CXXCXGXG Domain 1 67 67 55.2 6.9e-15 1 No_clan
Cotton_A_20230_CDS 93 115 92 116 PF12171.8 zf-C2H2_jaz Family 2 24 27 24.1 3.2e-05 1 CL0361
Cotton_A_08588_CDS 209 393 207 393 PF11721.8 Malectin Domain 3 165 165 129.3 1.5e-37 1 CL0202
Cotton_A_08588_CDS 481 745 478 746 PF07714.17 Pkinase_Tyr Domain 4 258 259 150.2 6.3e-44 1 CL0016
Cotton_A_36933_CDS 116 140 116 140 PF00096.26 zf-C2H2 Domain 1 23 23 16.2 0.011 1 CL0361
Cotton_A_18565_CDS 6 245 5 245 PF00121.18 TIM Domain 2 243 243 296.9 9.6e-89 1 CL0036
Cotton_A_19917_CDS 53 259 53 323 PF10250.9 O-FucT Family 1 232 336 123.4 1.7e-35 1 CL0113
Cotton_A_05622_CDS 92 111 91 111 PF00612.27 IQ Motif 2 21 21 23.0 4.1e-05 1 CL0220
Cotton_A_05622_CDS 114 131 113 132 PF00612.27 IQ Motif 2 19 21 13.7 0.041 1 CL0220
Cotton_A_38883_CDS 162 236 133 237 PF14380.6 WAK_assoc Domain 31 103 104 44.4 2.2e-11 1 No_clan
Cotton_A_22579_CDS 97 352 94 360 PF12697.7 Abhydrolase_6 Domain 4 211 220 57.8 2.3e-15 1 CL0028
Cotton_A_03624_CDS 172 232 160 234 PF12894.7 ANAPC4_WD40 Repeat 27 90 92 24.5 2.4e-05 1 CL0186
Cotton_A_03624_CDS 261 291 253 292 PF00400.32 WD40 Repeat 8 37 38 18.1 0.0036 1 CL0186
Cotton_A_03624_CDS 301 340 299 340 PF00400.32 WD40 Repeat 3 38 38 21.0 0.00044 1 CL0186
Cotton_A_03624_CDS 394 429 391 429 PF00400.32 WD40 Repeat 4 38 38 14.4 0.055 1 CL0186
Cotton_A_10241_CDS 107 162 107 162 PF02045.15 CBFB_NFYA Family 1 56 56 91.1 4.8e-26 1 No_clan
Cotton_A_03396_CDS 7 94 6 104 PF00168.30 C2 Domain 2 90 103 42.7 5.3e-11 1 CL0154
Cotton_A_04090_CDS 123 188 121 188 PF00462.24 Glutaredoxin Domain 3 60 60 45.3 7.5e-12 1 CL0172
Cotton_A_14716_CDS 193 420 163 425 PF00201.18 UDPGT Family 208 419 499 96.6 1.5e-27 1 CL0113
Cotton_A_24263_CDS 107 421 107 421 PF00069.25 Pkinase Domain 1 264 264 146.3 1.1e-42 1 CL0016
Cotton_A_26380_CDS 14 174 14 175 PF00071.22 Ras Domain 1 161 162 203.0 2e-60 1 CL0023
Cotton_A_15137_CDS 28 189 27 190 PF00160.21 Pro_isomerase Domain 2 157 158 157.8 2.5e-46 1 CL0475
Cotton_A_07733_CDS 122 248 120 249 PF01529.20 DHHC Family 3 133 134 134.9 1.8e-39 1 No_clan
Cotton_A_37782_CDS 134 250 133 251 PF00271.31 Helicase_C Family 2 110 111 87.5 7.1e-25 1 CL0023
Cotton_A_35060_CDS 15 260 13 262 PF00224.21 PK Family 3 249 348 315.7 3.1e-94 1 CL0151
Cotton_A_35060_CDS 281 334 276 337 PF00224.21 PK Family 292 345 348 78.1 5.5e-22 1 CL0151
Cotton_A_35060_CDS 352 465 352 470 PF02887.16 PK_C Domain 1 98 117 70.5 1.4e-19 1 No_clan
Cotton_A_35332_CDS 143 220 120 233 PF00307.31 CH Domain 24 91 109 47.2 2e-12 1 CL0188
Cotton_A_35332_CDS 253 354 252 356 PF00307.31 CH Domain 2 107 109 88.8 2.4e-25 1 CL0188
Cotton_A_35332_CDS 380 480 376 482 PF00307.31 CH Domain 5 106 109 66.6 1.9e-18 1 CL0188
Cotton_A_35332_CDS 500 601 497 605 PF00307.31 CH Domain 4 104 109 63.5 1.8e-17 1 CL0188
Cotton_A_11400_CDS 158 408 157 408 PF00454.27 PI3_PI4_kinase Family 2 250 250 165.0 2.7e-48 1 CL0016
Cotton_A_25305_CDS 23 60 22 60 PF08263.12 LRRNT_2 Family 2 41 41 23.1 6.5e-05 1 No_clan
Cotton_A_25305_CDS 88 144 87 147 PF13855.6 LRR_8 Repeat 2 59 61 36.7 2.6e-09 1 CL0022
Cotton_A_25305_CDS 321 358 316 358 PF08263.12 LRRNT_2 Family 2 41 41 16.6 0.0072 1 No_clan
Cotton_A_25305_CDS 577 848 573 850 PF07714.17 Pkinase_Tyr Domain 5 257 259 161.6 2.1e-47 1 CL0016
Cotton_A_10100_CDS 28 74 27 74 PF00319.18 SRF-TF Domain 2 48 48 82.1 1.4e-23 1 No_clan
Cotton_A_16274_CDS 1790 2182 1783 2194 PF04357.13 TamB Family 7 366 383 53.1 2.9e-14 1 CL0401
Cotton_A_29493_CDS 3 186 2 189 PF03721.14 UDPG_MGDP_dh_N Domain 2 183 187 226.3 2.2e-67 1 CL0063
Cotton_A_35342_CDS 1 430 1 433 PF00996.18 GDI Family 1 432 436 749.4 8.9e-226 1 CL0063
Cotton_A_05133_CDS 11 51 10 58 PF00319.18 SRF-TF Domain 2 42 48 59.8 1.3e-16 1 No_clan
Cotton_A_03185_CDS 117 194 117 196 PF04136.15 Sec34 Family 1 78 149 66.9 1.7e-18 1 No_clan
Cotton_A_03185_CDS 201 281 199 281 PF04136.15 Sec34 Family 68 149 149 79.7 1.9e-22 1 No_clan
Cotton_A_34155_CDS 3 213 3 214 PF00091.25 Tubulin Domain 1 196 197 228.0 1.2e-67 1 CL0566
Cotton_A_34155_CDS 263 392 263 393 PF03953.17 Tubulin_C Domain 1 125 126 171.2 9.5e-51 1 CL0442
Cotton_A_01050_CDS 1 210 1 211 PF03181.15 BURP Family 1 214 215 238.8 4.7e-71 1 No_clan
Cotton_A_10237_CDS 731 862 729 862 PF07928.12 Vps54 Family 3 134 134 158.5 1.2e-46 1 No_clan
Cotton_A_34320_CDS 34 96 33 96 PF03732.17 Retrotrans_gag Family 2 66 96 40.7 2.2e-10 1 CL0523
Cotton_A_39687_CDS 74 359 74 359 PF13292.6 DXP_synthase_N Family 1 273 273 376.0 8.9e-113 1 CL0254
Cotton_A_39687_CDS 397 557 394 559 PF02779.24 Transket_pyr Domain 4 174 178 149.2 9.5e-44 1 CL0254
Cotton_A_39687_CDS 575 698 575 698 PF02780.20 Transketolase_C Domain 1 124 124 108.4 2e-31 1 CL0591
Cotton_A_27318_CDS 207 236 206 236 PF01535.20 PPR Family 2 31 31 15.5 0.015 1 CL0020
Cotton_A_27318_CDS 304 334 302 335 PF12854.7 PPR_1 Repeat 3 33 34 25.7 6.6e-06 1 CL0020
Cotton_A_27318_CDS 341 390 341 390 PF13041.6 PPR_2 Repeat 1 50 50 59.7 2.3e-16 1 CL0020
Cotton_A_27318_CDS 415 444 414 444 PF01535.20 PPR Family 2 31 31 21.5 0.00019 1 CL0020
Cotton_A_27318_CDS 446 493 446 495 PF13041.6 PPR_2 Repeat 1 48 50 46.8 2.5e-12 1 CL0020
Cotton_A_27318_CDS 519 548 519 549 PF01535.20 PPR Family 1 30 31 15.0 0.022 1 CL0020
Cotton_A_12154_CDS 104 173 101 173 PF00364.22 Biotin_lipoyl Domain 5 73 73 63.5 1.2e-17 1 CL0105
Cotton_A_12154_CDS 243 471 241 471 PF00198.23 2-oxoacid_dh Domain 3 233 233 263.6 1.4e-78 1 CL0149
Cotton_A_14442_CDS 6 46 6 48 PF14555.6 UBA_4 Domain 1 41 43 43.5 1.9e-11 1 CL0214
Cotton_A_14442_CDS 499 579 498 580 PF00789.20 UBX Domain 2 80 81 68.0 6.1e-19 1 CL0072
Cotton_A_05500_CDS 52 136 45 139 PF00651.31 BTB Domain 21 108 111 25.2 1.5e-05 1 CL0033
Cotton_A_05500_CDS 155 255 154 258 PF07707.15 BACK Domain 2 96 103 33.7 3e-08 1 CL0033
Cotton_A_29793_CDS 218 510 214 583 PF07995.11 GSDH Domain 7 231 332 79.0 3.8e-22 1 CL0186
Cotton_A_26143_CDS 105 224 102 224 PF00254.28 FKBP_C Domain 5 94 94 74.6 5.9e-21 1 CL0487
Cotton_A_29540_CDS 13 75 13 75 PF00462.24 Glutaredoxin Domain 1 60 60 52.6 4e-14 1 CL0172
Cotton_A_23869_CDS 78 128 77 129 PF00847.20 AP2 Domain 2 53 54 55.5 4.9e-15 1 CL0081
Cotton_A_04268_CDS 174 222 174 223 PF13041.6 PPR_2 Repeat 1 49 50 36.7 3.6e-09 1 CL0020
Cotton_A_04268_CDS 253 278 253 280 PF01535.20 PPR Family 4 29 31 13.0 0.095 1 CL0020
Cotton_A_04268_CDS 280 327 278 327 PF13041.6 PPR_2 Repeat 3 50 50 43.8 2.1e-11 1 CL0020
Cotton_A_29812_CDS 17 56 17 60 PF02861.20 Clp_N Family 1 40 53 33.1 4.5e-08 1 No_clan
Cotton_A_29812_CDS 96 146 96 146 PF02861.20 Clp_N Family 1 53 53 41.1 1.5e-10 1 No_clan
Cotton_A_14384_CDS 490 534 490 534 PF11331.8 zinc_ribbon_12 Family 1 45 45 75.1 2.8e-21 1 CL0167
Cotton_A_19684_CDS 12 109 12 111 PF00034.21 Cytochrom_C Domain 1 90 92 51.2 2.1e-13 1 CL0318
Cotton_A_28888_CDS 1 132 1 132 PF00125.24 Histone Domain 1 131 131 181.1 1.1e-53 1 CL0012
Cotton_A_08454_CDS 30 82 6 90 PF03924.13 CHASE Domain 108 161 188 25.4 1.2e-05 1 CL0165
Cotton_A_24069_CDS 79 172 79 196 PF04536.14 TPM_phosphatase Domain 1 102 125 27.5 2.8e-06 1 CL0063
Cotton_A_02444_CDS 88 200 56 204 PF12796.7 Ank_2 Repeat 1 79 83 41.6 1.4e-10 1 CL0465
Cotton_A_02444_CDS 214 302 212 305 PF12796.7 Ank_2 Repeat 3 79 83 57.7 1.3e-15 1 CL0465
Cotton_A_02444_CDS 310 339 309 339 PF13606.6 Ank_3 Repeat 2 31 31 20.4 0.00046 1 CL0465
Cotton_A_02444_CDS 427 529 423 529 PF13962.6 PGG Domain 6 116 116 79.3 1.8e-22 1 No_clan
Cotton_A_29791_CDS 5 141 1 142 PF00141.23 peroxidase Domain 109 228 229 84.8 6.8e-24 1 CL0617
Cotton_A_32509_CDS 20 77 17 80 PF03109.16 ABC1 Family 27 85 119 34.7 1.6e-08 1 CL0016
Cotton_A_06331_CDS 46 350 46 364 PF00459.25 Inositol_P Family 1 252 272 179.2 1.1e-52 1 CL0171
Cotton_A_11080_CDS 95 114 94 114 PF00612.27 IQ Motif 2 21 21 22.8 4.8e-05 1 CL0220
Cotton_A_03268_CDS 8 69 8 75 PF00076.22 RRM_1 Domain 1 61 70 58.6 4e-16 1 CL0221
Cotton_A_03268_CDS 108 174 108 177 PF00076.22 RRM_1 Domain 1 67 70 58.9 3.2e-16 1 CL0221
Cotton_A_12602_CDS 211 241 210 243 PF12854.7 PPR_1 Repeat 2 32 34 35.8 4.6e-09 1 CL0020
Cotton_A_12602_CDS 250 298 249 298 PF13041.6 PPR_2 Repeat 2 50 50 66.5 1.7e-18 1 CL0020
Cotton_A_12602_CDS 315 341 315 344 PF12854.7 PPR_1 Repeat 1 27 34 30.4 2.2e-07 1 CL0020
Cotton_A_12602_CDS 354 403 354 403 PF13041.6 PPR_2 Repeat 1 50 50 65.2 4.5e-18 1 CL0020
Cotton_A_12602_CDS 425 473 424 473 PF13041.6 PPR_2 Repeat 2 50 50 43.6 2.5e-11 1 CL0020
Cotton_A_12602_CDS 494 543 494 543 PF13041.6 PPR_2 Repeat 1 50 50 65.0 5.2e-18 1 CL0020
Cotton_A_40015_CDS 68 114 67 116 PF13041.6 PPR_2 Repeat 2 48 50 32.7 6.5e-08 1 CL0020
Cotton_A_40015_CDS 143 169 143 170 PF01535.20 PPR Family 4 30 31 12.0 0.2 1 CL0020
Cotton_A_40015_CDS 171 194 171 199 PF01535.20 PPR Family 1 24 31 17.8 0.0027 1 CL0020
Cotton_A_40015_CDS 272 296 272 301 PF01535.20 PPR Family 1 25 31 11.8 0.22 1 CL0020
Cotton_A_40015_CDS 372 420 371 420 PF13041.6 PPR_2 Repeat 2 50 50 53.5 2e-14 1 CL0020
Cotton_A_16317_CDS 234 267 234 267 PF00515.28 TPR_1 Repeat 1 34 34 29.4 4.4e-07 1 CL0020
Cotton_A_16317_CDS 269 302 268 302 PF07719.17 TPR_2 Repeat 2 34 34 27.6 1.8e-06 1 CL0020
Cotton_A_19259_CDS 20 75 18 76 PF02701.15 zf-Dof Family 3 58 59 115.9 6.2e-34 1 No_clan
Cotton_A_19066_CDS 54 97 53 97 PF13639.6 zf-RING_2 Domain 2 44 44 52.4 4.7e-14 1 CL0229
Cotton_A_30045_CDS 96 170 18 170 PF02225.22 PA Family 9 89 89 29.8 4.6e-07 1 CL0364
Cotton_A_30045_CDS 248 524 244 526 PF04258.13 Peptidase_A22B Family 7 282 284 286.5 2.4e-85 1 CL0130
Cotton_A_15578_CDS 74 395 74 399 PF16363.5 GDP_Man_Dehyd Domain 1 328 332 186.4 8.6e-55 1 CL0063
Cotton_A_13452_CDS 34 90 34 90 PF11961.8 DUF3475 Family 1 57 57 78.8 2.2e-22 1 No_clan
Cotton_A_13452_CDS 389 480 389 480 PF05003.12 DUF668 Family 1 89 89 103.1 8.6e-30 1 No_clan
Cotton_A_31698_CDS 351 393 351 394 PF06203.14 CCT Motif 1 43 44 59.6 2.2e-16 1 CL0281
Cotton_A_21636_CDS 30 375 28 380 PF00224.21 PK Family 4 343 348 306.0 2.8e-91 1 CL0151
Cotton_A_21636_CDS 395 519 395 523 PF02887.16 PK_C Domain 1 113 117 83.0 1.8e-23 1 No_clan
Cotton_A_27043_CDS 53 216 52 216 PF05078.12 DUF679 Family 2 163 163 225.9 2.4e-67 1 No_clan
Cotton_A_03219_CDS 56 212 56 213 PF01257.19 2Fe-2S_thioredx Family 1 144 145 185.4 4.9e-55 1 CL0172
Cotton_A_22148_CDS 28 65 28 65 PF00187.19 Chitin_bind_1 Domain 1 38 38 50.8 1.7e-13 1 No_clan
Cotton_A_22938_CDS 18 40 14 40 PF13961.6 DUF4219 Domain 5 27 27 32.1 6.5e-08 1 CL0523
Cotton_A_22938_CDS 54 138 24 140 PF14223.6 Retrotran_gag_2 Family 47 129 138 53.7 1.6e-14 1 CL0523
Cotton_A_11576_CDS 401 468 401 469 PF06886.11 TPX2 Family 1 56 57 39.6 4.5e-10 1 No_clan
Cotton_A_15730_CDS 14 76 12 76 PF07765.12 KIP1 Family 3 74 74 50.6 1.6e-13 1 No_clan
Cotton_A_28304_CDS 101 126 100 126 PF01535.20 PPR Family 6 31 31 15.9 0.012 1 CL0020
Cotton_A_28304_CDS 191 241 189 249 PF13812.6 PPR_3 Repeat 5 55 63 39.3 5.2e-10 1 CL0020
Cotton_A_28304_CDS 269 319 269 319 PF13041.6 PPR_2 Repeat 1 50 50 38.0 1.3e-09 1 CL0020
Cotton_A_15760_CDS 48 348 47 348 PF02535.22 Zip Family 2 333 333 240.1 3.5e-71 1 CL0184
Cotton_A_35401_CDS 7 177 5 177 PF00025.21 Arf Domain 3 175 175 263.8 5.1e-79 1 CL0023
Cotton_A_35971_CDS 35 500 35 511 PF00067.22 p450 Domain 1 452 463 285.1 9.5e-85 1 No_clan
Cotton_A_00430_CDS 218 298 215 304 PF16543.5 DFRP_C Domain 4 83 89 64.9 7.2e-18 1 No_clan
Cotton_A_06909_CDS 14 272 4 286 PF00067.22 p450 Domain 192 447 463 206.6 6e-61 1 No_clan
Cotton_A_04144_CDS 71 333 69 337 PF00069.25 Pkinase Domain 3 259 264 140.2 7.7e-41 1 CL0016
Cotton_A_39035_CDS 42 134 41 146 PF00168.30 C2 Domain 2 91 103 72.0 4.1e-20 1 CL0154
Cotton_A_39035_CDS 202 308 202 308 PF00168.30 C2 Domain 1 103 103 68.5 5.1e-19 1 CL0154
Cotton_A_39035_CDS 363 472 363 472 PF00168.30 C2 Domain 1 103 103 80.9 6.8e-23 1 CL0154
Cotton_A_39035_CDS 617 772 617 772 PF08372.10 PRT_C Family 1 156 156 264.1 3.3e-79 1 CL0484
Cotton_A_19253_CDS 66 356 63 356 PF00481.21 PP2C Family 4 258 258 180.5 4.5e-53 1 CL0238
Cotton_A_23660_CDS 17 177 12 179 PF00999.21 Na_H_Exchanger Family 7 154 381 67.0 1.3e-18 1 CL0064
Cotton_A_23660_CDS 181 373 177 374 PF00999.21 Na_H_Exchanger Family 213 380 381 92.9 1.7e-26 1 CL0064
Cotton_A_39756_CDS 155 298 153 298 PF07526.11 POX Domain 3 136 136 167.2 2.7e-49 1 No_clan
Cotton_A_39756_CDS 367 406 367 406 PF05920.11 Homeobox_KN Family 1 40 40 64.5 6e-18 1 CL0123
Cotton_A_13718_CDS 50 144 49 145 PF15277.6 Sec3-PIP2_bind Domain 2 89 90 66.7 1.4e-18 1 CL0266
Cotton_A_13718_CDS 223 490 221 513 PF09763.9 Sec3_C Family 3 272 700 161.7 2.6e-47 1 CL0295
Cotton_A_13718_CDS 581 869 505 870 PF09763.9 Sec3_C Family 384 699 700 141.1 4.3e-41 1 CL0295
Cotton_A_21147_CDS 87 250 86 255 PF02776.18 TPP_enzyme_N Domain 2 166 172 176.7 2.9e-52 1 CL0254
Cotton_A_21147_CDS 278 409 278 411 PF00205.22 TPP_enzyme_M Domain 1 135 137 149.0 6.7e-44 1 CL0085
Cotton_A_21147_CDS 473 628 473 628 PF02775.21 TPP_enzyme_C Domain 1 153 153 160.6 2.3e-47 1 CL0254
Cotton_A_11566_CDS 30 118 29 119 PF02269.16 TFIID-18kDa Domain 2 92 93 104.7 1.9e-30 1 CL0012
Cotton_A_27823_CDS 3 100 2 109 PF03694.13 Erg28 Family 2 101 110 89.3 2.1e-25 1 No_clan
Cotton_A_38212_CDS 192 252 192 252 PF13855.6 LRR_8 Repeat 1 61 61 35.8 5.1e-09 1 CL0022
Cotton_A_38212_CDS 314 373 313 373 PF13855.6 LRR_8 Repeat 2 61 61 29.7 3.9e-07 1 CL0022
Cotton_A_22361_CDS 145 260 137 262 PF01025.19 GrpE Family 11 125 166 92.0 3.1e-26 1 No_clan
Cotton_A_01447_CDS 192 232 191 233 PF12799.7 LRR_4 Repeat 2 43 44 30.8 2.6e-07 1 CL0022
Cotton_A_17561_CDS 29 147 28 153 PF16913.5 PUNUT Family 164 290 322 118.2 4.3e-34 1 CL0184
Cotton_A_40848_CDS 34 178 32 178 PF04043.15 PMEI Domain 3 154 154 54.5 1.6e-14 1 No_clan
Cotton_A_40848_CDS 226 531 226 531 PF01095.19 Pectinesterase Family 1 298 298 394.8 1.6e-118 1 CL0268
Cotton_A_00653_CDS 43 162 42 179 PF03018.14 Dirigent Family 2 124 148 151.3 1.6e-44 1 CL0650
Cotton_A_00653_CDS 238 263 235 265 PF01535.20 PPR Family 4 29 31 14.9 0.024 1 CL0020
Cotton_A_00653_CDS 266 295 266 296 PF01535.20 PPR Family 1 30 31 25.8 8e-06 1 CL0020
Cotton_A_00653_CDS 297 324 297 327 PF01535.20 PPR Family 1 28 31 25.2 1.2e-05 1 CL0020
Cotton_A_00653_CDS 370 396 367 397 PF01535.20 PPR Family 4 30 31 26.5 4.7e-06 1 CL0020
Cotton_A_00653_CDS 426 474 426 475 PF13041.6 PPR_2 Repeat 1 49 50 39.2 5.8e-10 1 CL0020
Cotton_A_00653_CDS 530 576 528 577 PF13041.6 PPR_2 Repeat 3 49 50 57.0 1.7e-15 1 CL0020
Cotton_A_02573_CDS 1076 1158 1076 1158 PF00226.31 DnaJ Domain 1 63 63 61.4 6.4e-17 1 CL0392
Cotton_A_18095_CDS 8 83 4 111 PF18052.1 Rx_N Domain 12 87 93 60.7 1.2e-16 1 No_clan
Cotton_A_03468_CDS 140 193 139 193 PF14416.6 PMR5N Domain 2 53 53 76.6 1.3e-21 1 No_clan
Cotton_A_03468_CDS 194 482 194 483 PF13839.6 PC-Esterase Family 1 282 283 308.2 6.6e-92 1 CL0264
Cotton_A_13970_CDS 5 61 4 63 PF05347.15 Complex1_LYR Family 2 56 59 49.8 2.6e-13 1 CL0491
Cotton_A_08934_CDS 74 174 74 177 PF01453.24 B_lectin Domain 1 104 105 98.5 2.8e-28 1 No_clan
Cotton_A_08934_CDS 220 318 207 319 PF00954.20 S_locus_glycop Domain 13 110 111 75.7 3.8e-21 1 No_clan
Cotton_A_08934_CDS 343 412 339 412 PF08276.11 PAN_2 Domain 3 67 67 43.5 2.5e-11 1 CL0168
Cotton_A_08934_CDS 437 522 435 533 PF13947.6 GUB_WAK_bind Domain 3 90 106 34.4 3e-08 1 No_clan
Cotton_A_08934_CDS 699 965 696 967 PF07714.17 Pkinase_Tyr Domain 4 257 259 156.7 6.6e-46 1 CL0016
Cotton_A_08934_CDS 969 1014 969 1014 PF11883.8 DUF3403 Family 1 46 46 36.1 5e-09 1 No_clan
Cotton_A_07731_CDS 89 118 88 118 PF01535.20 PPR Family 2 31 31 17.6 0.0033 1 CL0020
Cotton_A_07731_CDS 161 185 161 188 PF01535.20 PPR Family 4 28 31 12.1 0.18 1 CL0020
Cotton_A_07731_CDS 189 215 189 218 PF01535.20 PPR Family 1 27 31 30.2 3.1e-07 1 CL0020
Cotton_A_07731_CDS 222 251 222 253 PF01535.20 PPR Family 1 29 31 14.9 0.023 1 CL0020
Cotton_A_07731_CDS 254 283 254 284 PF01535.20 PPR Family 1 30 31 34.1 1.8e-08 1 CL0020
Cotton_A_07731_CDS 285 315 285 315 PF01535.20 PPR Family 1 31 31 29.3 5.9e-07 1 CL0020
Cotton_A_07731_CDS 316 342 316 345 PF01535.20 PPR Family 1 27 31 19.8 0.00065 1 CL0020
Cotton_A_07731_CDS 417 462 415 464 PF13041.6 PPR_2 Repeat 3 48 50 39.2 6e-10 1 CL0020
Cotton_A_07731_CDS 491 514 490 517 PF01535.20 PPR Family 3 26 31 10.1 0.79 1 CL0020
Cotton_A_14184_CDS 4 136 1 139 PF03918.14 CcmH Family 15 140 143 108.2 2e-31 1 No_clan
Cotton_A_36808_CDS 91 345 91 347 PF05822.12 UMPH-1 Family 1 244 246 310.6 7.6e-93 1 CL0137
Cotton_A_01166_CDS 62 600 62 601 PF02990.16 EMP70 Family 1 518 519 751.1 5.9e-226 1 No_clan
Cotton_A_00629_CDS 101 153 99 153 PF00584.20 SecE Family 3 55 55 24.5 1.9e-05 1 No_clan
Cotton_A_07065_CDS 248 281 248 283 PF00320.27 GATA Domain 1 34 36 60.1 1.1e-16 1 CL0167
Cotton_A_07533_CDS 8 456 7 475 PF03094.15 Mlo Family 2 460 479 592.2 5.6e-178 1 No_clan
Cotton_A_30893_CDS 75 222 74 225 PF00270.29 DEAD Domain 2 173 176 68.4 6.4e-19 1 CL0023
Cotton_A_23658_CDS 11 55 10 57 PF00643.24 zf-B_box Domain 2 40 42 28.4 1.3e-06 1 No_clan
Cotton_A_23658_CDS 55 99 53 99 PF00643.24 zf-B_box Domain 3 42 42 31.5 1.5e-07 1 No_clan
Cotton_A_13522_CDS 280 442 272 449 PF00201.18 UDPGT Family 261 413 499 83.1 1.9e-23 1 CL0113
Cotton_A_13239_CDS 106 360 106 360 PF00454.27 PI3_PI4_kinase Family 1 250 250 165.2 2.3e-48 1 CL0016
Cotton_A_24637_CDS 324 444 318 445 PF00271.31 Helicase_C Family 7 110 111 58.1 9.8e-16 1 CL0023
Cotton_A_24637_CDS 506 599 506 635 PF04408.23 HA2 Domain 1 107 108 31.8 1.3e-07 1 No_clan
Cotton_A_24637_CDS 669 746 669 749 PF07717.16 OB_NTP_bind Domain 1 79 83 39.8 4.3e-10 1 CL0021
Cotton_A_24637_CDS 1453 1506 1438 1506 PF01485.21 IBR Domain 12 62 62 30.3 3.5e-07 1 CL0229
Cotton_A_19145_CDS 83 479 75 486 PF05701.11 WEMBL Family 36 399 562 55.5 4.2e-15 1 No_clan
Cotton_A_20594_CDS 2 146 1 146 PF00195.19 Chal_sti_synt_N Domain 81 225 225 256.4 2e-76 1 CL0046
Cotton_A_20594_CDS 156 305 156 306 PF02797.15 Chal_sti_synt_C Domain 1 150 151 229.8 1.2e-68 1 CL0046
Cotton_A_02427_CDS 175 234 146 235 PF12894.7 ANAPC4_WD40 Repeat 30 91 92 27.7 2.5e-06 1 CL0186
Cotton_A_02427_CDS 258 293 255 293 PF00400.32 WD40 Repeat 4 38 38 31.5 2.1e-07 1 CL0186
Cotton_A_02427_CDS 306 344 303 344 PF00400.32 WD40 Repeat 4 38 38 21.0 0.00043 1 CL0186
Cotton_A_02427_CDS 396 429 391 429 PF00400.32 WD40 Repeat 6 38 38 15.9 0.018 1 CL0186
Cotton_A_16168_CDS 65 118 63 119 PF00046.29 Homeodomain Domain 3 56 57 63.9 8.9e-18 1 CL0123
Cotton_A_16168_CDS 120 162 120 162 PF02183.18 HALZ Coiled-coil 1 43 43 63.4 1.7e-17 1 No_clan
Cotton_A_40428_CDS 62 132 62 133 PF04564.15 U-box Domain 1 71 73 57.2 1.4e-15 1 CL0229
Cotton_A_34365_CDS 10 57 10 57 PF00319.18 SRF-TF Domain 1 48 48 85.0 1.7e-24 1 No_clan
Cotton_A_34365_CDS 83 172 81 173 PF01486.17 K-box Family 3 92 93 91.9 2.2e-26 1 No_clan
Cotton_A_25088_CDS 108 354 106 400 PF00481.21 PP2C Family 3 236 258 224.0 2.5e-66 1 CL0238
Cotton_A_24797_CDS 90 500 85 517 PF00067.22 p450 Domain 28 443 463 293.3 2.9e-87 1 No_clan
Cotton_A_27075_CDS 158 211 157 211 PF13855.6 LRR_8 Repeat 5 61 61 27.8 1.6e-06 1 CL0022
Cotton_A_27075_CDS 322 581 317 584 PF00069.25 Pkinase Domain 6 259 264 152.5 1.4e-44 1 CL0016
Cotton_A_32986_CDS 8 168 8 169 PF00071.22 Ras Domain 1 161 162 210.3 1.2e-62 1 CL0023
Cotton_A_17222_CDS 61 123 61 123 PF00226.31 DnaJ Domain 1 63 63 46.0 4.3e-12 1 CL0392
Cotton_A_34829_CDS 43 406 42 407 PF00155.21 Aminotran_1_2 Domain 3 362 363 186.4 8.3e-55 1 CL0061
Cotton_A_31513_CDS 69 503 68 524 PF00067.22 p450 Domain 2 442 463 255.1 1.2e-75 1 No_clan
Cotton_A_37011_CDS 42 286 40 294 PF02263.19 GBP Domain 3 251 260 132.3 1.8e-38 1 CL0023
Cotton_A_37011_CDS 294 423 293 427 PF02841.14 GBP_C Domain 2 136 297 44.9 9.5e-12 1 CL0023
Cotton_A_21459_CDS 79 215 78 236 PF05687.13 BES1_N Family 2 133 152 130.0 9.3e-38 1 No_clan
Cotton_A_21459_CDS 268 688 268 688 PF01373.17 Glyco_hydro_14 Domain 1 402 402 352.6 2.6e-105 1 CL0058
Cotton_A_20854_CDS 44 376 44 376 PF05055.12 DUF677 Family 1 336 336 458.8 8.7e-138 1 CL0133
Cotton_A_01471_CDS 37 335 29 377 PF03097.18 BRO1 Domain 14 299 389 53.8 1.3e-14 1 No_clan
Cotton_A_25031_CDS 115 390 112 392 PF00069.25 Pkinase Domain 4 259 264 158.3 2.3e-46 1 CL0016
Cotton_A_12424_CDS 121 406 117 408 PF07899.11 Frigida Family 5 287 289 344.2 5.7e-103 1 No_clan
Cotton_A_33990_CDS 34 94 4 99 PF05056.12 DUF674 Family 383 442 449 33.9 1.6e-08 1 No_clan
Cotton_A_09070_CDS 161 334 157 335 PF03352.13 Adenine_glyco Family 3 176 177 208.6 5.7e-62 1 No_clan
Cotton_A_10592_CDS 44 123 44 141 PF01627.23 Hpt Family 1 79 85 45.1 9.3e-12 1 No_clan
Cotton_A_27589_CDS 82 307 82 307 PF00244.20 14-3-3 Domain 1 222 222 326.5 7.2e-98 1 No_clan
Cotton_A_12484_CDS 4 56 1 58 PF07766.13 LETM1 Family 118 173 268 31.2 1.3e-07 1 No_clan
Cotton_A_12484_CDS 54 119 53 119 PF07766.13 LETM1 Family 202 268 268 61.1 1e-16 1 No_clan
Cotton_A_23896_CDS 24 98 24 99 PF03810.19 IBN_N Family 1 73 74 63.4 1.3e-17 1 CL0020
Cotton_A_23896_CDS 342 450 285 466 PF08506.10 Cse1 Family 184 289 370 28.7 5.7e-07 1 CL0020
Cotton_A_05713_CDS 80 338 78 338 PF00069.25 Pkinase Domain 3 264 264 223.0 4.4e-66 1 CL0016
Cotton_A_19479_CDS 68 130 68 130 PF00226.31 DnaJ Domain 1 63 63 68.4 4.4e-19 1 CL0392
Cotton_A_22706_CDS 6 105 5 112 PF13881.6 Rad60-SLD_2 Domain 2 101 111 104.8 2.6e-30 1 CL0072
Cotton_A_22706_CDS 109 206 109 210 PF01190.17 Pollen_Ole_e_I Family 1 94 99 79.0 2.7e-22 1 CL0287
Cotton_A_00179_CDS 54 171 53 207 PF04199.13 Cyclase Family 2 100 136 46.4 4.6e-12 1 CL0364
Cotton_A_18841_CDS 39 137 38 154 PF05208.13 ALG3 Family 2 102 358 124.5 6.4e-36 1 CL0111
Cotton_A_04192_CDS 1 97 1 97 PF13890.6 Rab3-GTPase_cat Family 72 163 163 120.6 4.9e-35 1 No_clan
Cotton_A_19122_CDS 44 351 44 352 PF03009.17 GDPD Family 1 258 259 229.3 6.1e-68 1 CL0384
Cotton_A_20173_CDS 281 327 277 330 PF00046.29 Homeodomain Domain 6 52 57 28.2 1.3e-06 1 CL0123
Cotton_A_07590_CDS 151 199 149 199 PF00010.26 HLH Domain 3 53 53 24.3 2.3e-05 1 No_clan
Cotton_A_21931_CDS 10 79 10 80 PF13450.6 NAD_binding_8 Domain 1 67 68 57.1 1.6e-15 1 CL0063
Cotton_A_33385_CDS 52 313 51 313 PF00069.25 Pkinase Domain 2 264 264 196.9 3.9e-58 1 CL0016
Cotton_A_05237_CDS 3 427 3 432 PF02458.15 Transferase Family 1 429 434 343.3 1.7e-102 1 CL0149
Cotton_A_23567_CDS 73 110 72 114 PF00013.29 KH_1 Domain 2 40 66 35.8 5.3e-09 1 CL0007
Cotton_A_25362_CDS 41 91 40 94 PF00349.21 Hexokinase_1 Domain 2 51 199 35.4 1e-08 1 CL0108
Cotton_A_24722_CDS 7 74 1 75 PF02536.14 mTERF Family 250 313 314 42.7 3.2e-11 1 No_clan
Cotton_A_07082_CDS 85 422 85 422 PF00225.23 Kinesin Domain 1 333 333 308.5 4.6e-92 1 CL0023
Cotton_A_07082_CDS 687 724 684 725 PF00514.23 Arm Repeat 4 40 41 29.5 5.1e-07 1 CL0020
Cotton_A_20073_CDS 294 498 292 554 PF00069.25 Pkinase Domain 3 206 264 158.9 1.6e-46 1 CL0016
Cotton_A_31846_CDS 34 640 34 640 PF00012.20 HSP70 Family 1 599 599 885.5 1.4e-266 1 CL0108
Cotton_A_13190_CDS 35 87 35 87 PF08100.11 Dimerisation Domain 1 51 51 73.7 8.7e-21 1 CL0123
Cotton_A_13190_CDS 143 348 143 348 PF00891.18 Methyltransf_2 Domain 1 210 210 201.6 8.5e-60 1 CL0063
Cotton_A_09183_CDS 56 354 55 354 PF07992.14 Pyr_redox_2 Domain 2 294 294 165.0 2.2e-48 1 CL0063
Cotton_A_04656_CDS 101 139 100 141 PF03790.13 KNOX1 Family 2 40 43 75.8 1.5e-21 1 No_clan
Cotton_A_04656_CDS 152 198 151 198 PF03791.13 KNOX2 Family 2 48 48 60.3 8.9e-17 1 No_clan
Cotton_A_04656_CDS 238 259 238 259 PF03789.13 ELK Domain 1 22 22 42.8 3.6e-11 1 No_clan
Cotton_A_04656_CDS 278 317 278 317 PF05920.11 Homeobox_KN Family 1 40 40 60.9 7.6e-17 1 CL0123
Cotton_A_15833_CDS 22 228 9 230 PF09451.10 ATG27 Family 14 221 264 41.0 1.9e-10 1 CL0226
Cotton_A_36595_CDS 112 229 111 234 PF07890.12 Rrp15p Family 2 132 134 70.6 1.5e-19 1 No_clan
Cotton_A_06546_CDS 34 146 22 153 PF00067.22 p450 Domain 21 133 463 48.8 4.4e-13 1 No_clan
Cotton_A_26881_CDS 35 113 35 167 PF02469.22 Fasciclin Domain 1 76 128 25.3 1.4e-05 1 No_clan
Cotton_A_38954_CDS 115 165 115 170 PF16450.5 Prot_ATP_ID_OB Domain 1 52 57 29.7 4.5e-07 1 CL0021
Cotton_A_38954_CDS 228 361 228 361 PF00004.29 AAA Domain 1 132 132 137.5 3.4e-40 1 CL0023
Cotton_A_38954_CDS 383 427 383 427 PF17862.1 AAA_lid_3 Domain 1 45 45 40.0 2.5e-10 1 CL0671
Cotton_A_24414_CDS 163 187 162 188 PF13912.6 zf-C2H2_6 Domain 2 26 27 45.8 4.1e-12 1 CL0361
Cotton_A_24414_CDS 212 234 211 236 PF13912.6 zf-C2H2_6 Domain 2 24 27 42.0 6.2e-11 1 CL0361
Cotton_A_32787_CDS 277 426 261 440 PF00201.18 UDPGT Family 275 409 499 74.2 9.3e-21 1 CL0113
Cotton_A_27840_CDS 108 141 108 141 PF06200.14 tify Domain 1 34 34 64.5 3.8e-18 1 No_clan
Cotton_A_27840_CDS 190 215 190 215 PF09425.10 CCT_2 Motif 1 26 26 55.2 4.7e-15 1 CL0281
Cotton_A_02633_CDS 281 331 280 335 PF00170.21 bZIP_1 Family 5 55 64 38.1 1.2e-09 1 CL0018
Cotton_A_02633_CDS 385 609 380 609 PF00687.21 Ribosomal_L1 Domain 4 204 204 133.3 9.4e-39 1 No_clan
Cotton_A_15375_CDS 155 277 152 279 PF01529.20 DHHC Family 4 132 134 122.3 1.4e-35 1 No_clan
Cotton_A_20856_CDS 110 442 110 445 PF02401.18 LYTB Family 1 254 264 264.3 1e-78 1 No_clan
Cotton_A_19645_CDS 41 143 41 144 PF00011.21 HSP20 Family 1 101 102 109.9 5.8e-32 1 CL0190
Cotton_A_04410_CDS 116 163 116 165 PF13041.6 PPR_2 Repeat 1 48 50 35.8 6.5e-09 1 CL0020
Cotton_A_04410_CDS 190 216 189 217 PF01535.20 PPR Family 4 30 31 15.1 0.021 1 CL0020
Cotton_A_04410_CDS 219 248 218 248 PF01535.20 PPR Family 2 31 31 29.5 5.1e-07 1 CL0020
Cotton_A_04410_CDS 290 317 289 319 PF01535.20 PPR Family 2 29 31 14.2 0.04 1 CL0020
Cotton_A_04410_CDS 321 346 320 349 PF01535.20 PPR Family 2 27 31 18.0 0.0025 1 CL0020
Cotton_A_04410_CDS 393 412 393 413 PF12854.7 PPR_1 Repeat 11 30 34 23.8 2.6e-05 1 CL0020
Cotton_A_04410_CDS 422 447 421 448 PF01535.20 PPR Family 2 27 31 29.0 7.5e-07 1 CL0020
Cotton_A_04410_CDS 457 484 457 486 PF01535.20 PPR Family 1 28 31 16.9 0.0052 1 CL0020
Cotton_A_04410_CDS 494 518 493 520 PF01535.20 PPR Family 2 26 31 13.5 0.064 1 CL0020
Cotton_A_04410_CDS 560 589 559 589 PF01535.20 PPR Family 2 31 31 12.2 0.17 1 CL0020
Cotton_A_04410_CDS 593 717 593 717 PF14432.6 DYW_deaminase Family 1 127 127 122.4 1e-35 1 CL0109
Cotton_A_09347_CDS 261 381 192 442 PF00201.18 UDPGT Family 263 368 499 48.5 5.6e-13 1 CL0113
Cotton_A_02798_CDS 54 106 53 107 PF04770.12 ZF-HD_dimer Family 2 54 55 102.8 8.7e-30 1 No_clan
Cotton_A_03269_CDS 4 334 3 335 PF08569.11 Mo25 Family 2 326 327 376.0 1.7e-112 1 CL0020
Cotton_A_39257_CDS 6 114 1 121 PF12222.8 PNGaseA Family 213 336 434 100.6 9.1e-29 1 No_clan
Cotton_A_39960_CDS 53 91 51 95 PF00025.21 Arf Domain 33 71 175 37.5 1.5e-09 1 CL0023
Cotton_A_39960_CDS 89 141 62 141 PF00069.25 Pkinase Domain 212 264 264 31.7 9.5e-08 1 CL0016
Cotton_A_29682_CDS 24 267 22 267 PF06813.13 Nodulin-like Family 3 250 250 287.7 7.1e-86 1 CL0015
Cotton_A_29682_CDS 348 543 336 574 PF07690.16 MFS_1 Family 10 176 353 45.6 4.4e-12 1 CL0015
Cotton_A_12564_CDS 40 119 38 150 PF13947.6 GUB_WAK_bind Domain 3 76 106 27.8 3.2e-06 1 No_clan
Cotton_A_12564_CDS 180 255 155 256 PF14380.6 WAK_assoc Domain 28 102 104 56.6 3.5e-15 1 No_clan
Cotton_A_12564_CDS 351 620 348 622 PF00069.25 Pkinase Domain 4 260 264 162.3 1.4e-47 1 CL0016
Cotton_A_02072_CDS 21 302 20 304 PF00248.21 Aldo_ket_red Domain 2 292 294 199.7 6e-59 1 No_clan
Cotton_A_25981_CDS 147 479 147 481 PF03016.15 Exostosin Family 1 298 300 271.0 1.2e-80 1 No_clan
Cotton_A_22023_CDS 26 333 26 334 PF05703.11 Auxin_canalis Family 1 255 256 352.1 2.4e-105 1 No_clan
Cotton_A_22023_CDS 376 480 376 482 PF08458.10 PH_2 Family 1 103 105 142.4 5.6e-42 1 CL0266
Cotton_A_10679_CDS 475 634 475 636 PF02518.26 HATPase_c Domain 1 110 112 75.9 3.2e-21 1 CL0025
Cotton_A_10679_CDS 939 1059 939 1061 PF00072.24 Response_reg Domain 1 110 112 74.0 9.8e-21 1 CL0304
Cotton_A_22296_CDS 69 348 67 349 PF13839.6 PC-Esterase Family 4 282 283 274.2 1.6e-81 1 CL0264
Cotton_A_10538_CDS 9 56 9 56 PF00249.31 Myb_DNA-binding Domain 1 46 46 55.2 5.7e-15 1 CL0123
Cotton_A_10538_CDS 62 106 62 107 PF00249.31 Myb_DNA-binding Domain 1 45 46 59.4 2.8e-16 1 CL0123
Cotton_A_17980_CDS 37 87 37 87 PF08100.11 Dimerisation Domain 1 51 51 47.5 1.3e-12 1 CL0123
Cotton_A_17980_CDS 138 344 138 344 PF00891.18 Methyltransf_2 Domain 1 210 210 218.6 5.4e-65 1 CL0063
Cotton_A_33653_CDS 67 222 66 222 PF02453.17 Reticulon Family 2 157 157 196.7 2.2e-58 1 CL0484
Cotton_A_04925_CDS 92 167 92 174 PF04526.13 DUF568 Family 1 77 101 72.8 3.2e-20 1 No_clan
Cotton_A_41101_CDS 65 217 65 217 PF00005.27 ABC_tran Domain 1 137 137 90.5 1.3e-25 1 CL0023
Cotton_A_41101_CDS 381 589 379 589 PF01061.24 ABC2_membrane Family 3 210 210 139.7 8.4e-41 1 CL0181
Cotton_A_22129_CDS 30 90 29 90 PF00046.29 Homeodomain Domain 2 57 57 65.6 2.6e-18 1 CL0123
Cotton_A_03172_CDS 39 98 37 105 PF00631.22 G-gamma Domain 3 59 68 39.0 6e-10 1 No_clan
Cotton_A_31206_CDS 121 194 121 195 PF03110.14 SBP Domain 1 74 75 110.8 3e-32 1 No_clan
Cotton_A_06279_CDS 62 88 62 89 PF05678.14 VQ Motif 1 27 28 38.6 5.4e-10 1 No_clan
Cotton_A_19071_CDS 5 377 4 377 PF00022.19 Actin Family 2 407 407 492.5 7.2e-148 1 CL0108
Cotton_A_08664_CDS 184 209 183 211 PF01535.20 PPR Family 2 27 31 9.7 1.1 1 CL0020
Cotton_A_08664_CDS 212 251 209 254 PF13812.6 PPR_3 Repeat 11 50 63 17.5 0.0033 1 CL0020
Cotton_A_08664_CDS 256 280 254 282 PF01535.20 PPR Family 5 29 31 17.6 0.0031 1 CL0020
Cotton_A_08664_CDS 292 332 287 334 PF13041.6 PPR_2 Repeat 8 48 50 32.7 6.4e-08 1 CL0020
Cotton_A_08664_CDS 351 397 351 399 PF13041.6 PPR_2 Repeat 1 47 50 35.2 1e-08 1 CL0020
Cotton_A_15476_CDS 8 171 7 172 PF09366.10 DUF1997 Family 2 153 154 111.0 5.6e-32 1 No_clan
Cotton_A_22735_CDS 61 179 48 179 PF00134.23 Cyclin_N Domain 12 127 127 81.6 3.8e-23 1 CL0065
Cotton_A_22735_CDS 181 298 181 304 PF02984.19 Cyclin_C Domain 1 113 119 33.4 4e-08 1 CL0065
Cotton_A_37504_CDS 36 121 35 121 PF01221.18 Dynein_light Domain 2 86 86 103.2 6.8e-30 1 No_clan
Cotton_A_13573_CDS 83 182 83 187 PF03168.13 LEA_2 Domain 1 96 101 30.7 3.5e-07 1 CL0159
Cotton_A_20648_CDS 98 290 13 292 PF02309.16 AUX_IAA Family 60 235 237 214.1 2.4e-63 1 CL0072
Cotton_A_23958_CDS 48 323 36 324 PF03151.16 TPT Family 15 289 290 55.8 4.4e-15 1 CL0184
Cotton_A_39109_CDS 174 237 173 237 PF02319.20 E2F_TDP Domain 2 71 71 85.0 2.7e-24 1 CL0123
Cotton_A_39109_CDS 252 351 252 352 PF16421.5 E2F_CC-MB Domain 1 94 95 114.0 3e-33 1 No_clan
Cotton_A_30892_CDS 34 116 33 117 PF01657.17 Stress-antifung Family 2 82 95 56.2 4e-15 1 No_clan
Cotton_A_01289_CDS 49 407 49 408 PF12819.7 Malectin_like Domain 1 335 336 131.1 5.1e-38 1 CL0202
Cotton_A_01289_CDS 514 775 509 779 PF07714.17 Pkinase_Tyr Domain 6 255 259 157.8 3e-46 1 CL0016
Cotton_A_02942_CDS 3 74 3 74 PF00240.23 ubiquitin Domain 1 72 72 116.6 3.1e-34 1 CL0072
Cotton_A_02942_CDS 102 147 102 147 PF01599.19 Ribosomal_S27 Domain 1 45 45 94.7 2.7e-27 1 CL0167
Cotton_A_04852_CDS 40 123 40 123 PF01221.18 Dynein_light Domain 1 86 86 134.4 1.3e-39 1 No_clan
Cotton_A_05448_CDS 72 131 56 135 PF01975.17 SurE Family 61 118 195 34.2 2e-08 1 No_clan
Cotton_A_18824_CDS 2 156 1 157 PF01554.18 MatE Family 6 160 161 104.0 6.3e-30 1 CL0222
Cotton_A_18824_CDS 235 397 235 398 PF01554.18 MatE Family 1 160 161 113.8 5.8e-33 1 CL0222
Cotton_A_20582_CDS 47 318 45 320 PF00069.25 Pkinase Domain 3 260 264 158.9 1.5e-46 1 CL0016
Cotton_A_08188_CDS 78 122 76 131 PF03735.14 ENT Family 4 48 70 36.0 5.5e-09 1 No_clan
Cotton_A_25757_CDS 46 170 45 172 PF01553.21 Acyltransferase Family 2 133 135 95.5 2e-27 1 CL0228
Cotton_A_35163_CDS 187 224 187 227 PF00514.23 Arm Repeat 1 37 41 24.7 1.7e-05 1 CL0020
Cotton_A_27923_CDS 37 165 32 181 PF00305.19 Lipoxygenase Domain 312 441 674 199.8 7.5e-59 1 No_clan
Cotton_A_27923_CDS 191 247 175 247 PF00305.19 Lipoxygenase Domain 618 674 674 48.1 6e-13 1 No_clan
Cotton_A_36228_CDS 100 541 100 542 PF01593.24 Amino_oxidase Domain 1 451 452 273.8 3.5e-81 1 CL0063
Cotton_A_17495_CDS 35 160 35 164 PF04934.14 Med6 Family 1 128 133 143.8 2.6e-42 1 No_clan
Cotton_A_19115_CDS 48 323 46 323 PF00231.19 ATP-synt Domain 3 279 279 254.6 1.4e-75 1 No_clan
Cotton_A_18600_CDS 40 105 40 107 PF16209.5 PhoLip_ATPase_N Family 1 65 67 79.6 1e-22 1 No_clan
Cotton_A_18600_CDS 538 623 520 626 PF13246.6 Cation_ATPase Family 18 87 91 43.8 2.1e-11 1 CL0137
Cotton_A_18600_CDS 890 1141 890 1141 PF16212.5 PhoLip_ATPase_C Family 1 249 249 273.7 1.6e-81 1 No_clan
Cotton_A_12682_CDS 7 220 7 235 PF00083.24 Sugar_tr Family 1 228 452 168.7 2e-49 1 CL0015
Cotton_A_33107_CDS 763 926 743 933 PF06957.11 COPI_C Family 228 389 403 22.6 3.8e-05 1 CL0020
Cotton_A_09414_CDS 1 175 1 175 PF01301.19 Glyco_hydro_35 Domain 119 310 316 127.4 9.1e-37 1 CL0058
Cotton_A_29626_CDS 800 919 799 921 PF00989.25 PAS Domain 2 111 113 82.5 2.1e-23 1 CL0183
Cotton_A_29626_CDS 946 1005 941 1005 PF00512.25 HisKA Domain 6 67 67 35.3 9e-09 1 CL0025
Cotton_A_35610_CDS 45 401 44 403 PF07690.16 MFS_1 Family 2 351 353 71.0 8.6e-20 1 CL0015
Cotton_A_22141_CDS 38 76 37 77 PF08263.12 LRRNT_2 Family 2 40 41 36.7 3.8e-09 1 No_clan
Cotton_A_22141_CDS 710 942 708 1010 PF00069.25 Pkinase Domain 3 212 264 142.0 2.2e-41 1 CL0016
Cotton_A_19934_CDS 121 303 120 303 PF04669.13 Polysacc_synt_4 Family 2 190 190 201.2 1.1e-59 1 No_clan
Cotton_A_16998_CDS 7 104 7 105 PF03195.14 LOB Family 1 98 99 143.0 3.4e-42 1 No_clan
Cotton_A_37028_CDS 49 129 47 129 PF14389.6 Lzipper-MIP1 Family 3 84 84 76.3 1.6e-21 1 No_clan
Cotton_A_37028_CDS 397 526 396 526 PF04784.14 DUF547 Family 2 123 123 123.3 5.7e-36 1 No_clan
Cotton_A_29897_CDS 44 127 43 127 PF00464.19 SHMT Domain 2 85 399 124.3 4.5e-36 1 CL0061
Cotton_A_16487_CDS 87 325 86 325 PF08423.11 Rad51 Domain 2 242 255 365.6 1.1e-109 1 CL0023
Cotton_A_03963_CDS 45 97 44 97 PF14416.6 PMR5N Domain 2 53 53 78.0 5e-22 1 No_clan
Cotton_A_03963_CDS 98 361 98 362 PF13839.6 PC-Esterase Family 1 282 283 320.2 1.5e-95 1 CL0264
Cotton_A_23474_CDS 60 148 58 148 PF00254.28 FKBP_C Domain 4 94 94 83.0 1.4e-23 1 CL0487
Cotton_A_23474_CDS 175 266 172 267 PF00254.28 FKBP_C Domain 4 93 94 55.4 5.8e-15 1 CL0487
Cotton_A_23474_CDS 295 387 291 387 PF00254.28 FKBP_C Domain 5 94 94 69.6 2.2e-19 1 CL0487
Cotton_A_28558_CDS 34 170 34 170 PF13716.6 CRAL_TRIO_2 Domain 1 138 138 98.3 4.1e-28 1 CL0512
Cotton_A_28405_CDS 9 332 8 332 PF03492.15 Methyltransf_7 Family 2 334 334 426.1 9.8e-128 1 CL0063
Cotton_A_01863_CDS 10 30 1 30 PF08263.12 LRRNT_2 Family 22 41 41 20.8 0.00035 1 No_clan
Cotton_A_01863_CDS 183 218 178 218 PF13855.6 LRR_8 Repeat 26 61 61 28.6 8.5e-07 1 CL0022
Cotton_A_01863_CDS 397 418 396 418 PF00560.33 LRR_1 Repeat 2 23 23 13.4 0.092 1 CL0022
Cotton_A_01863_CDS 420 442 420 442 PF00560.33 LRR_1 Repeat 1 23 23 11.8 0.29 1 CL0022
Cotton_A_01863_CDS 469 525 468 525 PF13855.6 LRR_8 Repeat 5 61 61 33.8 2.1e-08 1 CL0022
Cotton_A_01863_CDS 648 907 645 910 PF00069.25 Pkinase Domain 12 260 264 73.8 1.4e-20 1 CL0016
Cotton_A_17851_CDS 1 86 1 89 PF12776.7 Myb_DNA-bind_3 Domain 6 92 96 53.2 4.6e-14 1 CL0123
Cotton_A_17851_CDS 148 257 139 257 PF02746.16 MR_MLE_N Domain 13 117 117 32.2 1e-07 1 CL0227
Cotton_A_17851_CDS 285 481 276 493 PF13378.6 MR_MLE_C Domain 10 207 220 105.1 3.8e-30 1 CL0256
Cotton_A_07089_CDS 73 136 71 137 PF01809.18 YidD Family 3 65 66 89.5 9.3e-26 1 No_clan
Cotton_A_23180_CDS 38 180 37 181 PF03018.14 Dirigent Family 2 147 148 125.1 1.8e-36 1 CL0650
Cotton_A_37774_CDS 2 21 1 23 PF01535.20 PPR Family 10 29 31 12.7 0.12 1 CL0020
Cotton_A_37774_CDS 25 52 24 54 PF01535.20 PPR Family 2 29 31 28.7 9.3e-07 1 CL0020
Cotton_A_37774_CDS 96 121 96 123 PF01535.20 PPR Family 4 29 31 17.9 0.0026 1 CL0020
Cotton_A_37774_CDS 124 154 124 154 PF01535.20 PPR Family 1 31 31 21.0 0.00027 1 CL0020
Cotton_A_37774_CDS 268 295 268 295 PF01535.20 PPR Family 4 31 31 11.7 0.24 1 CL0020
Cotton_A_37774_CDS 296 322 296 324 PF01535.20 PPR Family 1 27 31 30.9 1.9e-07 1 CL0020
Cotton_A_37774_CDS 372 396 372 398 PF01535.20 PPR Family 4 28 31 22.9 6.6e-05 1 CL0020
Cotton_A_37774_CDS 401 424 400 428 PF01535.20 PPR Family 2 25 31 16.4 0.0077 1 CL0020
Cotton_A_37774_CDS 436 464 436 465 PF01535.20 PPR Family 1 29 31 22.2 0.00011 1 CL0020
Cotton_A_37774_CDS 474 497 472 498 PF01535.20 PPR Family 3 26 31 16.0 0.01 1 CL0020
Cotton_A_01432_CDS 524 681 487 684 PF09787.9 Golgin_A5 Family 136 300 306 83.1 2.4e-23 1 No_clan
Cotton_A_14782_CDS 6 203 5 204 PF08442.10 ATP-grasp_2 Domain 2 201 202 64.6 8.9e-18 1 CL0179
Cotton_A_14782_CDS 242 417 241 418 PF16114.5 Citrate_bind Domain 2 177 178 261.1 3.8e-78 1 CL0506
Cotton_A_35508_CDS 22 82 22 82 PF13855.6 LRR_8 Repeat 1 61 61 34.9 9.6e-09 1 CL0022
Cotton_A_35508_CDS 196 317 193 319 PF11721.8 Malectin Domain 4 102 165 80.0 2e-22 1 CL0202
Cotton_A_05648_CDS 26 66 25 66 PF08263.12 LRRNT_2 Family 2 41 41 39.8 4.2e-10 1 No_clan
Cotton_A_11165_CDS 181 283 180 284 PF03168.13 LEA_2 Domain 2 100 101 29.0 1.1e-06 1 CL0159
Cotton_A_11924_CDS 37 97 37 117 PF18036.1 Ubiquitin_4 Domain 1 63 89 36.4 4e-09 1 CL0072
Cotton_A_35941_CDS 64 214 63 214 PF00190.22 Cupin_1 Domain 2 151 151 173.8 1.7e-51 1 CL0029
Cotton_A_03101_CDS 77 484 75 484 PF01603.20 B56 Family 3 415 415 561.3 1.3e-168 1 CL0020
Cotton_A_13476_CDS 148 213 144 236 PF12333.8 Ipi1_N Family 7 70 102 27.1 4.8e-06 1 No_clan
Cotton_A_18625_CDS 306 462 304 463 PF13177.6 DNA_pol3_delta2 Domain 3 162 163 81.7 4.8e-23 1 CL0023
Cotton_A_07818_CDS 13 51 13 52 PF01428.16 zf-AN1 Family 1 39 40 49.5 3.3e-13 1 No_clan
Cotton_A_07818_CDS 101 141 101 142 PF01428.16 zf-AN1 Family 1 39 40 34.3 2e-08 1 No_clan
Cotton_A_07818_CDS 232 254 232 254 PF13894.6 zf-C2H2_4 Domain 2 24 24 20.0 0.0008 1 CL0361
Cotton_A_40420_CDS 6 122 2 136 PF00790.19 VHS Domain 5 122 141 99.3 1.6e-28 1 CL0009
Cotton_A_09030_CDS 52 368 52 368 PF00251.20 Glyco_hydro_32N Domain 1 305 305 328.6 4.4e-98 1 CL0143
Cotton_A_09030_CDS 371 564 371 564 PF08244.12 Glyco_hydro_32C Domain 1 158 158 93.4 1.4e-26 1 CL0004
Cotton_A_16278_CDS 120 148 120 150 PF01535.20 PPR Family 1 29 31 10.2 0.74 1 CL0020
Cotton_A_16278_CDS 226 255 225 255 PF01535.20 PPR Family 2 31 31 19.4 0.00086 1 CL0020
Cotton_A_16278_CDS 258 302 257 306 PF13041.6 PPR_2 Repeat 2 46 50 46.5 3e-12 1 CL0020
Cotton_A_16278_CDS 303 341 300 341 PF13041.6 PPR_2 Repeat 12 50 50 35.5 8.2e-09 1 CL0020
Cotton_A_16278_CDS 397 445 396 445 PF13041.6 PPR_2 Repeat 2 50 50 45.3 7.2e-12 1 CL0020
Cotton_A_16278_CDS 505 530 504 533 PF01535.20 PPR Family 2 27 31 12.0 0.19 1 CL0020
Cotton_A_16278_CDS 537 582 536 585 PF13041.6 PPR_2 Repeat 2 47 50 34.8 1.4e-08 1 CL0020
Cotton_A_16278_CDS 602 634 602 635 PF12854.7 PPR_1 Repeat 1 33 34 47.3 1.2e-12 1 CL0020
Cotton_A_13222_CDS 101 355 98 355 PF00069.25 Pkinase Domain 4 264 264 180.9 3.1e-53 1 CL0016
Cotton_A_13222_CDS 429 485 429 486 PF12202.8 OSR1_C Domain 1 63 64 26.7 4.6e-06 1 CL0487
Cotton_A_09758_CDS 1 93 1 96 PF00069.25 Pkinase Domain 120 216 264 90.2 1.4e-25 1 CL0016
Cotton_A_24568_CDS 166 302 161 325 PF00931.22 NB-ARC Domain 6 149 252 98.1 4.7e-28 1 CL0023
Cotton_A_37943_CDS 149 383 145 385 PF00931.22 NB-ARC Domain 5 250 252 184.6 1.8e-54 1 CL0023
Cotton_A_37943_CDS 526 581 524 582 PF13855.6 LRR_8 Repeat 3 59 61 36.9 2.2e-09 1 CL0022
Cotton_A_01122_CDS 358 455 336 456 PF07839.11 CaM_binding Domain 13 116 117 42.4 1e-10 1 No_clan
Cotton_A_26995_CDS 75 117 74 117 PF00847.20 AP2 Domain 3 46 54 28.8 1.1e-06 1 CL0081
Cotton_A_35854_CDS 158 229 158 229 PF02713.14 DUF220 Family 1 73 73 106.2 6.6e-31 1 No_clan
Cotton_A_20386_CDS 50 260 49 271 PF02348.19 CTP_transf_3 Family 2 219 221 177.3 4.2e-52 1 CL0110
Cotton_A_12013_CDS 8 66 8 70 PF09202.11 Rio2_N Domain 1 59 82 73.0 1.7e-20 1 CL0123
Cotton_A_12013_CDS 126 298 126 303 PF01163.22 RIO1 Family 1 182 188 179.2 6.1e-53 1 CL0016
Cotton_A_35933_CDS 30 152 30 155 PF01477.23 PLAT Domain 1 114 117 52.9 4.8e-14 1 CL0321
Cotton_A_27063_CDS 15 67 15 71 PF18086.1 PPIP5K2_N Domain 1 47 90 39.9 3.5e-10 1 CL0483
Cotton_A_27063_CDS 96 144 85 144 PF18086.1 PPIP5K2_N Domain 42 90 90 64.9 5.7e-18 1 CL0483
Cotton_A_27063_CDS 404 1000 404 1000 PF00328.22 His_Phos_2 Family 1 383 383 458.3 2.6e-137 1 CL0071
Cotton_A_22701_CDS 48 325 48 326 PF03009.17 GDPD Family 1 258 259 182.8 9.4e-54 1 CL0384
Cotton_A_11975_CDS 92 250 91 251 PF05142.12 DUF702 Family 2 149 150 207.4 1.4e-61 1 No_clan
Cotton_A_24577_CDS 2 117 1 117 PF03140.15 DUF247 Family 280 397 397 107.9 6.8e-31 1 No_clan
Cotton_A_08833_CDS 84 244 83 244 PF04755.12 PAP_fibrillin Family 2 198 198 124.7 4.5e-36 1 No_clan
Cotton_A_33861_CDS 622 717 621 722 PF02362.21 B3 Family 2 95 101 59.0 3.3e-16 1 CL0405
Cotton_A_05660_CDS 96 175 93 175 PF14389.6 Lzipper-MIP1 Family 4 84 84 77.6 6.4e-22 1 No_clan
Cotton_A_05660_CDS 369 502 368 502 PF04784.14 DUF547 Family 2 123 123 131.8 1.3e-38 1 No_clan
Cotton_A_30028_CDS 29 272 28 274 PF00139.19 Lectin_legB Domain 2 247 249 219.6 4.5e-65 1 CL0004
Cotton_A_10225_CDS 212 269 211 269 PF03106.15 WRKY Domain 2 59 59 90.1 7.5e-26 1 CL0274
Cotton_A_31715_CDS 49 155 49 157 PF14226.6 DIOX_N Family 1 116 118 88.5 5.2e-25 1 CL0029
Cotton_A_31715_CDS 203 300 201 301 PF03171.20 2OG-FeII_Oxy Domain 3 100 101 95.3 2.5e-27 1 CL0029
Cotton_A_03347_CDS 83 293 41 293 PF04720.12 PDDEXK_6 Family 41 221 221 187.6 3e-55 1 No_clan
Cotton_A_06276_CDS 1 274 1 275 PF03321.13 GH3 Family 2 290 527 246.0 8.7e-73 1 CL0378
Cotton_A_30302_CDS 131 177 130 178 PF13920.6 zf-C3HC4_3 Domain 2 49 50 43.2 2.7e-11 1 CL0229
Cotton_A_08086_CDS 66 127 66 127 PF00226.31 DnaJ Domain 1 63 63 67.7 6.9e-19 1 CL0392
Cotton_A_08086_CDS 437 643 434 643 PF11926.8 DUF3444 Family 4 212 212 257.7 7.7e-77 1 No_clan
Cotton_A_19905_CDS 45 192 44 192 PF04043.15 PMEI Domain 2 154 154 94.6 7.1e-27 1 No_clan
Cotton_A_19905_CDS 247 538 247 540 PF01095.19 Pectinesterase Family 1 296 298 440.7 1.6e-132 1 CL0268
Cotton_A_05089_CDS 1 34 1 35 PF04419.14 4F5 Family 3 36 38 38.3 1.8e-09 1 CL0361
Cotton_A_28173_CDS 11 167 11 167 PF07800.12 DUF1644 Family 1 168 168 214.7 8.2e-64 1 CL0229
Cotton_A_15109_CDS 49 70 46 75 PF01535.20 PPR Family 4 25 31 12.2 0.17 1 CL0020
Cotton_A_15109_CDS 75 122 74 123 PF13041.6 PPR_2 Repeat 2 49 50 38.9 7.3e-10 1 CL0020
Cotton_A_15109_CDS 175 222 175 223 PF13041.6 PPR_2 Repeat 1 48 50 40.0 3.4e-10 1 CL0020
Cotton_A_15109_CDS 251 270 248 274 PF01535.20 PPR Family 4 23 31 15.5 0.016 1 CL0020
Cotton_A_15109_CDS 279 309 279 309 PF01535.20 PPR Family 1 31 31 15.7 0.013 1 CL0020
Cotton_A_15109_CDS 351 371 350 373 PF01535.20 PPR Family 2 22 31 13.5 0.067 1 CL0020
Cotton_A_14498_CDS 38 180 4 186 PF02309.16 AUX_IAA Family 44 214 237 112.3 3.1e-32 1 CL0072
Cotton_A_14498_CDS 317 401 314 406 PF03171.20 2OG-FeII_Oxy Domain 4 88 101 68.6 5.4e-19 1 CL0029
Cotton_A_20144_CDS 111 281 110 297 PF04321.17 RmlD_sub_bind Domain 2 163 287 44.1 1.4e-11 1 CL0063
Cotton_A_29856_CDS 88 343 85 345 PF00494.19 SQS_PSY Domain 4 261 263 236.1 4.7e-70 1 CL0613
Cotton_A_31182_CDS 144 203 143 203 PF13855.6 LRR_8 Repeat 2 61 61 35.8 5.1e-09 1 CL0022
Cotton_A_31182_CDS 389 447 387 447 PF13855.6 LRR_8 Repeat 3 61 61 38.9 5.4e-10 1 CL0022
Cotton_A_31182_CDS 506 561 504 561 PF13855.6 LRR_8 Repeat 6 61 61 36.5 3e-09 1 CL0022
Cotton_A_20396_CDS 215 271 215 271 PF04765.13 DUF616 Family 1 57 314 48.5 7.1e-13 1 No_clan
Cotton_A_19960_CDS 168 294 161 310 PF02535.22 Zip Family 180 307 333 42.8 3.8e-11 1 CL0184
Cotton_A_14881_CDS 31 79 29 80 PF00847.20 AP2 Domain 3 53 54 39.8 4e-10 1 CL0081
Cotton_A_19385_CDS 57 93 55 93 PF00400.32 WD40 Repeat 3 38 38 25.9 1.3e-05 1 CL0186
Cotton_A_19385_CDS 151 185 147 185 PF00400.32 WD40 Repeat 6 38 38 20.3 0.00072 1 CL0186
Cotton_A_19385_CDS 201 233 193 233 PF00400.32 WD40 Repeat 8 38 38 18.6 0.0026 1 CL0186
Cotton_A_19385_CDS 241 276 238 276 PF00400.32 WD40 Repeat 4 38 38 30.5 4.4e-07 1 CL0186
Cotton_A_19385_CDS 287 323 280 323 PF00400.32 WD40 Repeat 7 38 38 19.4 0.0014 1 CL0186
Cotton_A_19385_CDS 339 368 332 368 PF00400.32 WD40 Repeat 9 37 38 19.8 0.0011 1 CL0186
Cotton_A_16878_CDS 86 590 86 590 PF03372.23 Exo_endo_phos Domain 1 233 233 40.2 2.6e-10 1 CL0530
Cotton_A_25101_CDS 28 157 28 157 PF02365.15 NAM Family 1 126 126 117.4 7.1e-34 1 No_clan
Cotton_A_38510_CDS 56 177 55 179 PF13638.6 PIN_4 Domain 2 129 131 45.2 1.1e-11 1 CL0280
Cotton_A_38510_CDS 221 321 218 341 PF17216.3 Rrp44_CSD1 Domain 4 104 148 45.4 6.6e-12 1 CL0021
Cotton_A_38510_CDS 376 443 375 443 PF17849.1 OB_Dis3 Domain 2 77 77 68.4 3.9e-19 1 CL0021
Cotton_A_38510_CDS 474 803 474 804 PF00773.19 RNB Domain 1 324 326 330.0 1.7e-98 1 No_clan
Cotton_A_38510_CDS 854 929 853 935 PF17215.3 Rrp44_S1 Domain 2 78 89 37.1 2.2e-09 1 CL0021
Cotton_A_14172_CDS 52 98 51 99 PF01907.19 Ribosomal_L37e Family 2 53 54 69.4 2.1e-19 1 CL0167
Cotton_A_00833_CDS 308 622 308 623 PF01501.20 Glyco_transf_8 Family 1 255 256 306.7 1.3e-91 1 CL0110
Cotton_A_15605_CDS 44 123 44 130 PF01627.23 Hpt Family 1 78 85 23.1 6.5e-05 1 No_clan
Cotton_A_14948_CDS 99 270 95 270 PF16166.5 TIC20 Family 5 181 181 214.5 9.5e-64 1 No_clan
Cotton_A_07377_CDS 157 206 155 206 PF00847.20 AP2 Domain 3 54 54 46.3 3.6e-12 1 CL0081
Cotton_A_06524_CDS 34 81 34 82 PF14392.6 zf-CCHC_4 Domain 1 48 49 54.9 5.3e-15 1 CL0511
Cotton_A_14368_CDS 21 287 13 288 PF01263.20 Aldose_epim Family 9 300 301 225.4 9.8e-67 1 CL0103
Cotton_A_13944_CDS 31 208 12 209 PF00888.22 Cullin Family 13 208 618 117.7 5.7e-34 1 No_clan
Cotton_A_15250_CDS 83 287 83 287 PF11833.8 CPP1-like Family 1 197 197 199.3 5e-59 1 No_clan
Cotton_A_11489_CDS 11 258 11 258 PF06813.13 Nodulin-like Family 1 250 250 290.4 1.1e-86 1 CL0015
Cotton_A_05607_CDS 225 274 225 274 PF07797.14 DUF1639 Family 1 50 50 80.3 7.5e-23 1 No_clan
Cotton_A_26152_CDS 6 28 6 28 PF10584.9 Proteasome_A_N Domain 1 23 23 35.3 6.5e-09 1 CL0052
Cotton_A_26152_CDS 31 213 29 213 PF00227.26 Proteasome Domain 3 190 190 212.8 3e-63 1 CL0052
Cotton_A_37926_CDS 110 239 110 247 PF13365.6 Trypsin_2 Domain 1 141 150 72.9 5.2e-20 1 CL0124
Cotton_A_37926_CDS 303 386 285 386 PF13180.6 PDZ_2 Domain 12 82 82 28.4 1.5e-06 1 CL0466
Cotton_A_37926_CDS 393 537 393 537 PF17815.1 PDZ_3 Domain 1 145 145 175.2 6.7e-52 1 CL0466
Cotton_A_34110_CDS 9 192 7 192 PF00025.21 Arf Domain 3 175 175 222.1 3.2e-66 1 CL0023
Cotton_A_10435_CDS 83 328 83 329 PF02485.21 Branch Family 1 246 247 181.7 1.7e-53 1 CL0110
Cotton_A_23085_CDS 8 57 8 57 PF13041.6 PPR_2 Repeat 1 50 50 56.0 3.2e-15 1 CL0020
Cotton_A_23085_CDS 78 127 78 127 PF13041.6 PPR_2 Repeat 1 50 50 66.0 2.4e-18 1 CL0020
Cotton_A_23085_CDS 144 177 144 177 PF12854.7 PPR_1 Repeat 1 34 34 35.2 7.1e-09 1 CL0020
Cotton_A_23085_CDS 183 232 183 232 PF13041.6 PPR_2 Repeat 1 50 50 65.9 2.7e-18 1 CL0020
Cotton_A_23085_CDS 253 301 253 302 PF13041.6 PPR_2 Repeat 1 49 50 52.9 3e-14 1 CL0020
Cotton_A_23085_CDS 321 352 319 352 PF12854.7 PPR_1 Repeat 3 34 34 26.4 4.1e-06 1 CL0020
Cotton_A_23085_CDS 362 407 362 407 PF13041.6 PPR_2 Repeat 5 50 50 54.1 1.3e-14 1 CL0020
Cotton_A_08475_CDS 19 80 10 92 PF12763.7 EF-hand_4 Family 12 72 104 29.6 5.1e-07 1 CL0220
Cotton_A_08475_CDS 161 193 161 193 PF16880.5 EHD_N Family 1 33 33 53.9 1.2e-14 1 No_clan
Cotton_A_08475_CDS 198 357 197 357 PF01926.23 MMR_HSR1 Family 2 114 114 31.0 2.2e-07 1 CL0023
Cotton_A_08475_CDS 432 534 428 534 PF18150.1 DUF5600 Domain 5 107 107 125.2 1.5e-36 1 No_clan
Cotton_A_18958_CDS 158 512 141 520 PF00155.21 Aminotran_1_2 Domain 35 355 363 125.9 2e-36 1 CL0061
Cotton_A_12728_CDS 38 125 37 126 PF13837.6 Myb_DNA-bind_4 Domain 2 89 90 70.9 8.8e-20 1 CL0123
Cotton_A_12728_CDS 375 461 373 461 PF13837.6 Myb_DNA-bind_4 Domain 3 90 90 79.2 2.2e-22 1 CL0123
Cotton_A_00207_CDS 26 146 26 146 PF14226.6 DIOX_N Family 1 118 118 110.9 5.8e-32 1 CL0029
Cotton_A_00207_CDS 192 291 190 291 PF03171.20 2OG-FeII_Oxy Domain 3 101 101 102.6 1.4e-29 1 CL0029
Cotton_A_29086_CDS 17 44 13 49 PF00254.28 FKBP_C Domain 17 44 94 25.0 1.8e-05 1 CL0487
Cotton_A_32098_CDS 46 97 46 97 PF00249.31 Myb_DNA-binding Domain 1 46 46 34.7 1.5e-08 1 CL0123
Cotton_A_32098_CDS 144 190 144 191 PF14379.6 Myb_CC_LHEQLE Family 1 47 48 86.8 5.7e-25 1 No_clan
Cotton_A_08893_CDS 24 69 22 77 PF00170.21 bZIP_1 Family 5 50 64 40.0 3.1e-10 1 CL0018
Cotton_A_08552_CDS 1 132 1 132 PF00125.24 Histone Domain 1 131 131 181.1 1.1e-53 1 CL0012
Cotton_A_01790_CDS 47 469 47 469 PF03514.14 GRAS Family 1 374 374 470.8 2.8e-141 1 CL0063
Cotton_A_35002_CDS 33 212 32 213 PF00722.21 Glyco_hydro_16 Domain 2 176 177 205.8 3.3e-61 1 CL0004
Cotton_A_35002_CDS 242 287 241 287 PF06955.12 XET_C Family 2 47 47 71.9 2.8e-20 1 CL0004
Cotton_A_29620_CDS 328 380 326 387 PF00170.21 bZIP_1 Family 5 57 64 46.3 3.3e-12 1 CL0018
Cotton_A_17963_CDS 51 75 48 76 PF01535.20 PPR Family 5 29 31 9.4 1.3 1 CL0020
Cotton_A_17963_CDS 76 119 75 121 PF13041.6 PPR_2 Repeat 2 48 50 32.8 5.9e-08 1 CL0020
Cotton_A_17963_CDS 210 257 209 258 PF13041.6 PPR_2 Repeat 2 49 50 36.5 4.2e-09 1 CL0020
Cotton_A_17963_CDS 284 309 283 311 PF01535.20 PPR Family 2 27 31 19.1 0.0011 1 CL0020
Cotton_A_17963_CDS 352 379 350 379 PF01535.20 PPR Family 4 31 31 18.1 0.0023 1 CL0020
Cotton_A_04734_CDS 33 103 33 104 PF00240.23 ubiquitin Domain 1 71 72 115.0 9.7e-34 1 CL0072
Cotton_A_04734_CDS 109 170 109 174 PF00240.23 ubiquitin Domain 1 62 72 91.4 2.1e-26 1 CL0072
Cotton_A_28850_CDS 210 295 210 312 PF00004.29 AAA Domain 1 68 132 26.0 1e-05 1 CL0023
Cotton_A_28850_CDS 692 761 692 762 PF00076.22 RRM_1 Domain 1 69 70 74.5 4.3e-21 1 CL0221
Cotton_A_28850_CDS 801 817 800 817 PF00098.23 zf-CCHC Domain 2 18 18 29.5 4.9e-07 1 CL0511
Cotton_A_07000_CDS 20 120 18 121 PF08449.11 UAA Family 3 95 302 42.8 3.6e-11 1 CL0184
Cotton_A_01056_CDS 16 84 16 84 PF15159.6 PIG-Y Family 1 70 70 62.9 4.1e-17 1 No_clan
Cotton_A_00953_CDS 72 126 72 126 PF13370.6 Fer4_13 Domain 1 58 58 61.9 6.1e-17 1 CL0344
Cotton_A_00953_CDS 165 322 162 322 PF00753.27 Lactamase_B Domain 6 197 197 36.0 6.8e-09 1 CL0381
Cotton_A_05218_CDS 97 163 97 186 PF01068.21 DNA_ligase_A_M Domain 1 66 204 41.1 1.5e-10 1 CL0078
Cotton_A_22985_CDS 47 277 47 277 PF00230.20 MIP Family 1 227 227 273.8 1.2e-81 1 No_clan
Cotton_A_16733_CDS 2 66 1 66 PF13456.6 RVT_3 Domain 59 124 124 37.0 2.4e-09 1 CL0219
Cotton_A_12238_CDS 69 375 67 376 PF00294.24 PfkB Family 3 301 302 257.7 1.4e-76 1 CL0118
Cotton_A_26290_CDS 29 227 29 227 PF01027.20 Bax1-I Family 1 207 207 120.6 7.5e-35 1 CL0453
Cotton_A_38740_CDS 394 522 391 531 PF00566.18 RabGAP-TBC Family 72 204 215 107.2 9.3e-31 1 No_clan
Cotton_A_10531_CDS 36 96 18 99 PF15511.6 CENP-T_C Domain 19 79 108 34.4 1.8e-08 1 CL0012
Cotton_A_34388_CDS 1 162 1 162 PF14009.6 DUF4228 Family 1 179 179 125.6 2.7e-36 1 No_clan
Cotton_A_33268_CDS 60 239 55 247 PF16746.5 BAR_3 Domain 55 234 238 106.8 1.4e-30 1 CL0145
Cotton_A_33268_CDS 473 606 470 608 PF01412.18 ArfGap Domain 4 114 117 113.8 4.6e-33 1 No_clan
Cotton_A_33268_CDS 679 730 678 730 PF13637.6 Ank_4 Repeat 3 55 55 34.6 1.9e-08 1 CL0465
Cotton_A_02220_CDS 55 158 55 158 PF00011.21 HSP20 Family 1 102 102 104.3 3.1e-30 1 CL0190
Cotton_A_05329_CDS 47 104 20 127 PF05916.11 Sld5 Family 30 93 109 24.9 2.2e-05 1 No_clan
Cotton_A_33034_CDS 41 270 41 293 PF01501.20 Glyco_transf_8 Family 1 226 256 145.0 2.8e-42 1 CL0110
Cotton_A_15017_CDS 115 399 115 399 PF00069.25 Pkinase Domain 1 264 264 231.7 9.7e-69 1 CL0016
Cotton_A_20306_CDS 262 399 201 439 PF00201.18 UDPGT Family 266 390 499 78.7 3.9e-22 1 CL0113
Cotton_A_05737_CDS 28 334 28 336 PF00332.18 Glyco_hydro_17 Domain 1 309 313 301.5 8.3e-90 1 CL0058
Cotton_A_10339_CDS 124 366 109 379 PF00481.21 PP2C Family 24 249 258 123.9 8.3e-36 1 CL0238
Cotton_A_10339_CDS 499 590 498 591 PF00027.29 cNMP_binding Domain 2 88 89 64.0 9.7e-18 1 CL0029
Cotton_A_10339_CDS 625 729 624 731 PF00027.29 cNMP_binding Domain 2 85 89 39.7 3.7e-10 1 CL0029
Cotton_A_10339_CDS 788 1016 781 1016 PF00069.25 Pkinase Domain 18 264 264 88.1 6e-25 1 CL0016
Cotton_A_21478_CDS 13 180 12 186 PF00106.25 adh_short Domain 2 142 195 93.9 8.5e-27 1 CL0063
Cotton_A_15848_CDS 687 809 683 860 PF07724.14 AAA_2 Domain 7 139 171 37.9 1.8e-09 1 CL0023
Cotton_A_23125_CDS 167 437 166 438 PF00928.21 Adap_comp_sub Family 2 263 264 290.9 8.2e-87 1 CL0448
Cotton_A_28824_CDS 43 135 42 137 PF01657.17 Stress-antifung Family 2 93 95 50.6 2.3e-13 1 No_clan
Cotton_A_28824_CDS 155 239 151 241 PF01657.17 Stress-antifung Family 7 93 95 40.5 3.2e-10 1 No_clan
Cotton_A_14017_CDS 35 122 33 124 PF00153.27 Mito_carr Family 5 95 97 78.8 2.1e-22 1 No_clan
Cotton_A_14017_CDS 132 231 128 235 PF00153.27 Mito_carr Family 6 93 97 75.1 3.1e-21 1 No_clan
Cotton_A_14017_CDS 237 331 235 333 PF00153.27 Mito_carr Family 3 93 97 68.8 2.9e-19 1 No_clan
Cotton_A_12308_CDS 53 479 45 480 PF00202.21 Aminotran_3 Domain 10 405 406 305.0 6.5e-91 1 CL0061
Cotton_A_35636_CDS 29 286 26 286 PF07714.17 Pkinase_Tyr Domain 4 259 259 194.6 1.8e-57 1 CL0016
Cotton_A_01342_CDS 54 104 54 105 PF00847.20 AP2 Domain 1 53 54 46.5 3.2e-12 1 CL0081
Cotton_A_29651_CDS 67 123 67 124 PF04783.12 DUF630 Family 1 57 59 75.0 3.7e-21 1 No_clan
Cotton_A_29651_CDS 330 632 329 633 PF04782.12 DUF632 Family 2 309 310 303.8 1.3e-90 1 No_clan
Cotton_A_29093_CDS 42 425 38 430 PF00999.21 Na_H_Exchanger Family 3 374 381 230.7 2.3e-68 1 CL0064
Cotton_A_07761_CDS 32 65 32 65 PF14803.6 Nudix_N_2 Domain 1 34 34 50.7 1.2e-13 1 CL0167
Cotton_A_07761_CDS 70 171 66 184 PF00293.28 NUDIX Domain 5 115 131 53.2 3e-14 1 CL0261
Cotton_A_24099_CDS 43 511 43 511 PF01593.24 Amino_oxidase Domain 1 452 452 261.2 2.4e-77 1 CL0063
Cotton_A_20696_CDS 13 208 11 219 PF00378.20 ECH_1 Domain 4 192 251 81.7 5e-23 1 CL0127
Cotton_A_24819_CDS 6 64 6 64 PF05641.12 Agenet Domain 1 61 61 51.8 8.4e-14 1 CL0049
Cotton_A_16619_CDS 5 124 4 125 PF03311.14 Cornichon Family 2 121 122 140.2 3.8e-41 1 No_clan
Cotton_A_11584_CDS 85 496 85 496 PF01603.20 B56 Family 1 415 415 629.3 3e-189 1 CL0020
Cotton_A_29907_CDS 8 283 8 304 PF01207.17 Dus Family 1 259 310 199.4 7.4e-59 1 CL0036
Cotton_A_12610_CDS 286 344 286 358 PF00076.22 RRM_1 Domain 1 58 70 36.8 2.6e-09 1 CL0221
Cotton_A_12610_CDS 443 509 443 511 PF00076.22 RRM_1 Domain 1 66 70 63.2 1.5e-17 1 CL0221
Cotton_A_12610_CDS 591 640 590 640 PF17780.1 OCRE Domain 3 52 52 68.8 3e-19 1 No_clan
Cotton_A_19212_CDS 108 217 66 217 PF13091.6 PLDc_2 Domain 24 133 133 38.3 1e-09 1 CL0479
Cotton_A_36664_CDS 31 209 29 210 PF06697.12 DUF1191 Family 3 182 183 183.2 4e-54 1 CL0661
Cotton_A_11897_CDS 39 91 37 91 PF13637.6 Ank_4 Repeat 3 55 55 23.4 6.6e-05 1 CL0465
Cotton_A_11897_CDS 109 217 109 217 PF12796.7 Ank_2 Repeat 1 83 83 37.1 3.5e-09 1 CL0465
Cotton_A_11897_CDS 276 329 273 330 PF13962.6 PGG Domain 5 56 116 26.0 6.4e-06 1 No_clan
Cotton_A_35383_CDS 46 313 44 315 PF00069.25 Pkinase Domain 3 260 264 160.1 6.7e-47 1 CL0016
Cotton_A_16005_CDS 105 309 104 310 PF06775.14 Seipin Family 2 196 197 123.0 1.6e-35 1 No_clan
Cotton_A_07691_CDS 824 866 822 869 PF13920.6 zf-C3HC4_3 Domain 3 45 50 39.5 3.7e-10 1 CL0229
Cotton_A_15572_CDS 98 302 97 316 PF03151.16 TPT Family 2 211 290 270.3 1.9e-80 1 CL0184
Cotton_A_14073_CDS 279 336 278 336 PF03106.15 WRKY Domain 2 59 59 86.2 1.2e-24 1 CL0274
Cotton_A_19790_CDS 223 274 218 275 PF00170.21 bZIP_1 Family 12 63 64 31.4 1.5e-07 1 CL0018
Cotton_A_21468_CDS 5 93 4 109 PF00168.30 C2 Domain 2 87 103 60.8 1.3e-16 1 CL0154
Cotton_A_21468_CDS 270 362 269 374 PF00168.30 C2 Domain 2 91 103 69.3 2.9e-19 1 CL0154
Cotton_A_21468_CDS 433 539 433 539 PF00168.30 C2 Domain 1 103 103 83.4 1.2e-23 1 CL0154
Cotton_A_21468_CDS 598 705 597 705 PF00168.30 C2 Domain 2 103 103 84.9 3.9e-24 1 CL0154
Cotton_A_21468_CDS 850 1005 850 1005 PF08372.10 PRT_C Family 1 156 156 254.0 4.3e-76 1 CL0484
Cotton_A_33044_CDS 62 221 61 221 PF04759.13 DUF617 Family 2 163 163 222.9 2.3e-66 1 No_clan
Cotton_A_30249_CDS 57 96 27 121 PF01342.21 SAND Family 25 63 77 22.3 8e-05 1 No_clan
Cotton_A_04684_CDS 6 134 6 135 PF04446.12 Thg1 Domain 1 124 125 144.7 1.4e-42 1 No_clan
Cotton_A_04684_CDS 139 221 138 254 PF14413.6 Thg1C Domain 2 84 122 99.9 1.1e-28 1 No_clan
Cotton_A_04684_CDS 274 402 273 402 PF04446.12 Thg1 Domain 2 125 125 161.4 9.3e-48 1 No_clan
Cotton_A_04684_CDS 406 511 405 512 PF14413.6 Thg1C Domain 2 121 122 127.7 2.6e-37 1 No_clan
Cotton_A_33035_CDS 111 151 111 165 PF00412.22 LIM Domain 1 42 58 26.7 4.7e-06 1 CL0167
Cotton_A_33035_CDS 260 467 260 467 PF12315.8 DA1-like Family 1 208 208 327.2 3.2e-98 1 CL0126
Cotton_A_06378_CDS 185 426 184 426 PF04788.12 DUF620 Family 2 243 243 401.4 1.2e-120 1 No_clan
Cotton_A_41161_CDS 2 73 1 79 PF07993.12 NAD_binding_4 Family 85 156 257 67.6 9.1e-19 1 CL0063
Cotton_A_03813_CDS 1 147 1 148 PF00722.21 Glyco_hydro_16 Domain 26 176 177 90.2 1e-25 1 CL0004
Cotton_A_37934_CDS 73 170 73 184 PF14226.6 DIOX_N Family 1 98 118 71.9 7e-20 1 CL0029
Cotton_A_37934_CDS 229 320 224 322 PF03171.20 2OG-FeII_Oxy Domain 7 99 101 89.3 1.9e-25 1 CL0029
Cotton_A_09281_CDS 44 137 43 138 PF01657.17 Stress-antifung Family 2 94 95 50.0 3.4e-13 1 No_clan
Cotton_A_09281_CDS 193 241 149 243 PF01657.17 Stress-antifung Family 48 93 95 27.7 3.1e-06 1 No_clan
Cotton_A_30424_CDS 128 448 128 448 PF10250.9 O-FucT Family 1 336 336 211.0 3.7e-62 1 CL0113
Cotton_A_04724_CDS 72 192 71 193 PF04749.17 PLAC8 Family 2 98 99 59.9 3.8e-16 1 No_clan
Cotton_A_28241_CDS 86 329 84 332 PF00155.21 Aminotran_1_2 Domain 3 245 363 227.8 2.1e-67 1 CL0061
Cotton_A_13119_CDS 5 79 2 80 PF00928.21 Adap_comp_sub Family 149 225 264 36.8 2.6e-09 1 CL0448
Cotton_A_24057_CDS 62 347 57 349 PF00069.25 Pkinase Domain 6 260 264 154.0 4.9e-45 1 CL0016
Cotton_A_26976_CDS 7 68 7 74 PF00076.22 RRM_1 Domain 1 61 70 57.5 8.7e-16 1 CL0221
Cotton_A_26976_CDS 107 173 107 176 PF00076.22 RRM_1 Domain 1 67 70 55.3 4.4e-15 1 CL0221
Cotton_A_16679_CDS 5 205 1 206 PF01063.19 Aminotran_4 Domain 7 194 223 99.3 2.8e-28 1 No_clan
Cotton_A_14034_CDS 39 108 29 112 PF00153.27 Mito_carr Family 15 92 97 44.9 8e-12 1 No_clan
Cotton_A_14034_CDS 124 224 121 227 PF00153.27 Mito_carr Family 4 93 97 62.8 2.2e-17 1 No_clan
Cotton_A_14034_CDS 256 345 251 347 PF00153.27 Mito_carr Family 7 95 97 65.3 3.6e-18 1 No_clan
Cotton_A_21087_CDS 69 165 64 173 PF13962.6 PGG Domain 6 102 116 58.1 7.1e-16 1 No_clan
Cotton_A_26743_CDS 36 173 35 176 PF04043.15 PMEI Domain 2 151 154 71.5 9.3e-20 1 No_clan
Cotton_A_29077_CDS 56 107 53 115 PF00170.21 bZIP_1 Family 5 56 64 34.8 1.3e-08 1 CL0018
Cotton_A_07266_CDS 30 152 30 175 PF07651.16 ANTH Domain 1 121 277 148.5 1.8e-43 1 CL0009
Cotton_A_07266_CDS 210 368 201 368 PF07651.16 ANTH Domain 116 277 277 138.7 1.8e-40 1 CL0009
Cotton_A_24288_CDS 6 103 6 104 PF03195.14 LOB Family 1 98 99 144.9 9.1e-43 1 No_clan
Cotton_A_15133_CDS 28 192 27 193 PF00160.21 Pro_isomerase Domain 2 157 158 134.4 3.9e-39 1 CL0475
Cotton_A_08083_CDS 402 530 402 531 PF00004.29 AAA Domain 1 131 132 139.0 1.2e-40 1 CL0023
Cotton_A_08083_CDS 553 596 553 597 PF17862.1 AAA_lid_3 Domain 1 44 45 33.7 2.3e-08 1 CL0671
Cotton_A_08083_CDS 612 787 611 787 PF01434.18 Peptidase_M41 Domain 2 191 191 204.9 1e-60 1 CL0126
Cotton_A_18246_CDS 1 283 1 283 PF00332.18 Glyco_hydro_17 Domain 30 313 313 323.8 1.4e-96 1 CL0058
Cotton_A_11614_CDS 142 161 141 161 PF00612.27 IQ Motif 2 21 21 28.7 5.8e-07 1 CL0220
Cotton_A_11614_CDS 374 448 374 473 PF13178.6 DUF4005 Family 1 64 93 41.8 1.3e-10 1 No_clan
Cotton_A_33168_CDS 208 242 208 248 PF07645.15 EGF_CA Domain 1 36 42 32.1 9.5e-08 1 CL0001
Cotton_A_31438_CDS 5 33 3 33 PF01535.20 PPR Family 3 31 31 15.6 0.014 1 CL0020
Cotton_A_31438_CDS 71 120 71 120 PF13041.6 PPR_2 Repeat 1 50 50 48.5 7.1e-13 1 CL0020
Cotton_A_31438_CDS 144 163 144 165 PF01535.20 PPR Family 1 20 31 13.5 0.065 1 CL0020
Cotton_A_15960_CDS 95 171 9 172 PF14510.6 ABC_trans_N Domain 30 80 81 41.8 1.2e-10 1 No_clan
Cotton_A_15960_CDS 197 379 197 381 PF00005.27 ABC_tran Domain 1 135 137 55.6 7.7e-15 1 CL0023
Cotton_A_15960_CDS 533 745 532 745 PF01061.24 ABC2_membrane Family 2 210 210 134.5 3.3e-39 1 CL0181
Cotton_A_15960_CDS 750 814 750 814 PF08370.11 PDR_assoc Family 1 65 65 91.4 2.2e-26 1 No_clan
Cotton_A_15960_CDS 914 1059 914 1059 PF00005.27 ABC_tran Domain 1 137 137 72.2 5.9e-20 1 CL0023
Cotton_A_15960_CDS 1204 1416 1204 1418 PF01061.24 ABC2_membrane Family 1 208 210 186.8 3.2e-55 1 CL0181
Cotton_A_38741_CDS 70 110 70 110 PF13923.6 zf-C3HC4_2 Domain 1 40 40 43.5 2e-11 1 CL0229
Cotton_A_07858_CDS 9 52 8 53 PF00401.20 ATP-synt_DE Domain 2 46 47 31.2 1.9e-07 1 No_clan
Cotton_A_25174_CDS 12 120 11 136 PF00724.20 Oxidored_FMN Domain 2 113 342 105.5 3.4e-30 1 CL0036
Cotton_A_33434_CDS 7 264 1 265 PF16187.5 Peptidase_M16_M Family 23 278 279 294.6 6.9e-88 1 CL0094
Cotton_A_33434_CDS 269 456 268 456 PF05193.21 Peptidase_M16_C Domain 2 183 183 56.7 3.1e-15 1 CL0094
Cotton_A_09976_CDS 1 111 1 115 PF08284.11 RVP_2 Domain 21 131 136 101.9 2.3e-29 1 CL0129
Cotton_A_09976_CDS 112 262 108 263 PF00078.27 RVT_1 Family 15 221 222 97.7 6.7e-28 1 CL0027
Cotton_A_11194_CDS 122 172 122 173 PF00010.26 HLH Domain 1 52 53 36.0 5.1e-09 1 No_clan
Cotton_A_05353_CDS 126 229 115 230 PF09405.10 Btz Domain 11 129 130 63.4 2.4e-17 1 No_clan
Cotton_A_36718_CDS 18 82 18 82 PF08542.11 Rep_fac_C Domain 1 69 88 30.1 4.6e-07 1 CL0604
Cotton_A_30381_CDS 50 155 47 157 PF00112.23 Peptidase_C1 Domain 65 194 218 38.5 1.3e-09 1 CL0125
Cotton_A_08948_CDS 29 178 26 179 PF08613.11 Cyclin Family 4 160 161 118.8 2.7e-34 1 CL0065
Cotton_A_21546_CDS 28 98 28 98 PF00076.22 RRM_1 Domain 1 70 70 62.1 3.2e-17 1 CL0221
Cotton_A_21546_CDS 116 184 116 185 PF00076.22 RRM_1 Domain 1 69 70 78.1 3.2e-22 1 CL0221
Cotton_A_21546_CDS 207 275 207 275 PF00076.22 RRM_1 Domain 1 69 70 85.2 2e-24 1 CL0221
Cotton_A_21546_CDS 310 378 310 379 PF00076.22 RRM_1 Domain 1 69 70 72.9 1.4e-20 1 CL0221
Cotton_A_21546_CDS 553 619 552 619 PF00658.18 PABP Family 2 68 68 96.4 8e-28 1 No_clan
Cotton_A_01503_CDS 20 425 19 428 PF00501.28 AMP-binding Family 2 420 423 250.7 1.9e-74 1 CL0378
Cotton_A_01503_CDS 436 513 436 513 PF13193.6 AMP-binding_C Domain 1 76 76 62.0 7.9e-17 1 CL0531
Cotton_A_09793_CDS 74 100 74 102 PF13450.6 NAD_binding_8 Domain 1 27 68 24.5 2.3e-05 1 CL0063
Cotton_A_09793_CDS 221 489 220 493 PF08491.10 SE Family 2 269 276 394.8 1.6e-118 1 CL0063
Cotton_A_14981_CDS 418 453 417 454 PF03638.15 TCR Domain 2 37 38 42.0 8.6e-11 1 No_clan
Cotton_A_14981_CDS 503 539 503 540 PF03638.15 TCR Domain 1 37 38 47.9 1.2e-12 1 No_clan
Cotton_A_02062_CDS 307 413 303 463 PF00067.22 p450 Domain 294 398 463 55.4 4.4e-15 1 No_clan
Cotton_A_00649_CDS 40 434 40 438 PF01490.18 Aa_trans Family 1 408 409 232.5 6.7e-69 1 CL0062
Cotton_A_29614_CDS 59 106 57 106 PF00010.26 HLH Domain 4 53 53 38.1 1.1e-09 1 No_clan
Cotton_A_32868_CDS 62 84 61 85 PF12171.8 zf-C2H2_jaz Family 2 24 27 23.4 5.1e-05 1 CL0361
Cotton_A_15719_CDS 6 68 6 68 PF00226.31 DnaJ Domain 1 63 63 86.2 1.2e-24 1 CL0392
Cotton_A_15719_CDS 133 324 133 331 PF14308.6 DnaJ-X Domain 1 203 211 166.2 6.5e-49 1 No_clan
Cotton_A_39570_CDS 193 496 193 497 PF17681.1 GCP_N_terminal Domain 1 305 306 256.7 3.8e-76 1 CL0540
Cotton_A_39570_CDS 502 837 500 838 PF04130.13 GCP_C_terminal Domain 3 302 309 247.1 2.7e-73 1 CL0540
Cotton_A_28291_CDS 36 127 10 134 PF02309.16 AUX_IAA Family 48 164 237 84.5 9.8e-24 1 CL0072
Cotton_A_28291_CDS 133 176 127 178 PF02309.16 AUX_IAA Family 191 234 237 86.9 1.8e-24 1 CL0072
Cotton_A_15935_CDS 928 948 928 948 PF10650.9 zf-C3H1 Domain 1 22 22 38.0 9.7e-10 1 No_clan
Cotton_A_12435_CDS 23 132 23 135 PF03874.16 RNA_pol_Rpb4 Family 1 120 123 82.5 3e-23 1 CL0426
Cotton_A_25261_CDS 58 200 58 210 PF01494.19 FAD_binding_3 Family 1 145 349 27.1 2.3e-06 1 CL0063
Cotton_A_15103_CDS 242 293 242 293 PF00249.31 Myb_DNA-binding Domain 1 46 46 31.4 1.6e-07 1 CL0123
Cotton_A_15103_CDS 333 379 332 379 PF14379.6 Myb_CC_LHEQLE Family 2 48 48 72.2 2.1e-20 1 No_clan
Cotton_A_18828_CDS 107 220 102 224 PF00544.19 Pec_lyase_C Domain 28 138 211 31.8 9.8e-08 1 CL0268
Cotton_A_08896_CDS 218 252 215 253 PF00400.32 WD40 Repeat 4 37 38 36.5 5.4e-09 1 CL0186
Cotton_A_08896_CDS 458 494 456 494 PF00400.32 WD40 Repeat 3 38 38 15.8 0.02 1 CL0186
Cotton_A_02593_CDS 109 226 108 227 PF03479.15 DUF296 Domain 2 106 107 67.5 1.2e-18 1 CL0615
Cotton_A_37075_CDS 116 275 116 275 PF04759.13 DUF617 Family 1 163 163 234.8 4.9e-70 1 No_clan
Cotton_A_01637_CDS 50 304 15 309 PF05055.12 DUF677 Family 59 323 336 161.6 2.3e-47 1 CL0133
Cotton_A_17180_CDS 86 240 83 240 PF01553.21 Acyltransferase Family 4 135 135 78.1 4.7e-22 1 CL0228
Cotton_A_17180_CDS 251 319 248 322 PF16076.5 Acyltransf_C Family 4 71 74 55.3 5.3e-15 1 No_clan
Cotton_A_17231_CDS 3 99 2 101 PF05208.13 ALG3 Family 2 100 358 129.5 2e-37 1 CL0111
Cotton_A_17309_CDS 139 195 139 196 PF03106.15 WRKY Domain 1 58 59 85.8 1.7e-24 1 CL0274
Cotton_A_32343_CDS 116 290 116 290 PF10602.9 RPN7 Family 1 174 174 177.1 2.5e-52 1 CL0020
Cotton_A_32343_CDS 306 407 305 409 PF01399.27 PCI Domain 2 103 105 63.6 2e-17 1 CL0123
Cotton_A_26128_CDS 6 164 4 165 PF04573.12 SPC22 Family 3 170 171 175.8 4.9e-52 1 No_clan
Cotton_A_35469_CDS 24 77 22 77 PF03766.13 Remorin_N Family 3 54 54 39.5 4.2e-10 1 No_clan
Cotton_A_35469_CDS 81 186 80 186 PF03763.13 Remorin_C Family 2 107 107 107.8 2.4e-31 1 No_clan
Cotton_A_24255_CDS 156 328 156 328 PF00270.29 DEAD Domain 1 176 176 152.3 1.1e-44 1 CL0023
Cotton_A_24255_CDS 370 473 365 474 PF00271.31 Helicase_C Family 6 110 111 79.9 1.7e-22 1 CL0023
Cotton_A_24255_CDS 515 575 515 575 PF13959.6 DUF4217 Domain 1 61 61 65.6 3.5e-18 1 No_clan
Cotton_A_22878_CDS 26 147 23 148 PF00307.31 CH Domain 4 108 109 54.2 1.4e-14 1 CL0188
Cotton_A_22878_CDS 395 711 335 712 PF00225.23 Kinesin Domain 27 332 333 330.0 1.3e-98 1 CL0023
Cotton_A_33967_CDS 99 150 99 151 PF02861.20 Clp_N Family 1 52 53 50.7 1.4e-13 1 No_clan
Cotton_A_33967_CDS 177 226 175 226 PF02861.20 Clp_N Family 3 53 53 38.0 1.3e-09 1 No_clan
Cotton_A_07461_CDS 19 569 17 570 PF05701.11 WEMBL Family 3 561 562 184.4 3.6e-54 1 No_clan
Cotton_A_20674_CDS 7 105 7 106 PF03195.14 LOB Family 1 98 99 124.6 1.9e-36 1 No_clan
Cotton_A_29203_CDS 29 149 24 149 PF04852.12 DUF640 Family 6 126 126 220.5 5.2e-66 1 No_clan
Cotton_A_34441_CDS 157 355 156 355 PF03407.16 Nucleotid_trans Family 2 212 212 211.2 1.6e-62 1 CL0110
Cotton_A_21852_CDS 21 272 21 272 PF00069.25 Pkinase Domain 1 264 264 255.2 6.3e-76 1 CL0016
Cotton_A_39990_CDS 75 118 74 119 PF06839.12 zf-GRF Domain 2 44 45 55.9 3.3e-15 1 CL0167
Cotton_A_39990_CDS 177 191 176 192 PF00098.23 zf-CCHC Domain 2 16 18 24.7 1.7e-05 1 CL0511
Cotton_A_39990_CDS 210 227 210 227 PF00098.23 zf-CCHC Domain 1 18 18 36.5 3e-09 1 CL0511
Cotton_A_03730_CDS 509 563 508 564 PF00249.31 Myb_DNA-binding Domain 2 45 46 25.2 1.3e-05 1 CL0123
Cotton_A_18941_CDS 75 264 75 269 PF02096.20 60KD_IMP Family 1 160 166 85.0 5.4e-24 1 CL0376
Cotton_A_32544_CDS 49 134 49 134 PF00203.21 Ribosomal_S19 Domain 1 81 81 115.6 6.7e-34 1 No_clan
Cotton_A_02486_CDS 24 202 23 203 PF12710.7 HAD Family 2 187 188 57.0 3.4e-15 1 CL0137
Cotton_A_02486_CDS 298 390 271 400 PF01553.21 Acyltransferase Family 13 119 135 29.8 3.8e-07 1 CL0228
Cotton_A_19883_CDS 430 464 424 464 PF00400.32 WD40 Repeat 7 38 38 20.3 0.00071 1 CL0186
Cotton_A_19883_CDS 889 923 885 923 PF00400.32 WD40 Repeat 5 38 38 19.9 0.00097 1 CL0186
Cotton_A_01530_CDS 1 60 1 60 PF04783.12 DUF630 Family 1 59 59 74.3 6.3e-21 1 No_clan
Cotton_A_01530_CDS 273 596 273 597 PF04782.12 DUF632 Family 1 309 310 342.9 1.7e-102 1 No_clan
Cotton_A_14707_CDS 181 503 181 516 PF00343.20 Phosphorylase Family 1 317 711 438.0 6.3e-131 1 CL0113
Cotton_A_14707_CDS 603 1000 577 1000 PF00343.20 Phosphorylase Family 319 711 711 560.7 4.6e-168 1 CL0113
Cotton_A_10577_CDS 11 136 11 156 PF00179.26 UQ_con Domain 1 116 140 85.5 2.6e-24 1 CL0208
Cotton_A_10214_CDS 171 200 171 201 PF01535.20 PPR Family 1 30 31 29.2 6.2e-07 1 CL0020
Cotton_A_10214_CDS 203 229 202 232 PF01535.20 PPR Family 2 28 31 25.9 7.3e-06 1 CL0020
Cotton_A_10214_CDS 279 302 276 306 PF01535.20 PPR Family 4 27 31 15.2 0.019 1 CL0020
Cotton_A_10214_CDS 304 354 304 356 PF13041.6 PPR_2 Repeat 1 48 50 36.8 3.2e-09 1 CL0020
Cotton_A_10214_CDS 382 408 381 410 PF01535.20 PPR Family 2 28 31 23.4 4.7e-05 1 CL0020
Cotton_A_35249_CDS 48 165 48 166 PF13537.6 GATase_7 Domain 1 122 123 149.5 3.8e-44 1 CL0052
Cotton_A_35249_CDS 227 371 226 373 PF00733.21 Asn_synthase Domain 9 144 355 196.0 1.4e-57 1 CL0039
Cotton_A_29676_CDS 39 220 37 221 PF00722.21 Glyco_hydro_16 Domain 3 176 177 174.2 1.7e-51 1 CL0004
Cotton_A_29676_CDS 254 291 242 291 PF06955.12 XET_C Family 9 47 47 55.1 4.9e-15 1 CL0004
Cotton_A_27385_CDS 109 148 109 155 PF13418.6 Kelch_4 Repeat 1 41 49 26.6 4.3e-06 1 CL0186
Cotton_A_27385_CDS 164 210 159 210 PF13964.6 Kelch_6 Repeat 6 50 50 34.4 1.8e-08 1 CL0186
Cotton_A_27385_CDS 268 325 268 326 PF13418.6 Kelch_4 Repeat 6 48 49 25.3 1.1e-05 1 CL0186
Cotton_A_10449_CDS 1 26 1 26 PF01535.20 PPR Family 6 31 31 13.8 0.051 1 CL0020
Cotton_A_10449_CDS 69 88 66 94 PF01535.20 PPR Family 4 23 31 11.7 0.25 1 CL0020
Cotton_A_10449_CDS 94 143 94 143 PF13041.6 PPR_2 Repeat 1 50 50 43.9 2e-11 1 CL0020
Cotton_A_10449_CDS 195 242 195 244 PF13041.6 PPR_2 Repeat 1 48 50 43.3 3.2e-11 1 CL0020
Cotton_A_10449_CDS 270 295 269 297 PF01535.20 PPR Family 2 27 31 14.2 0.04 1 CL0020
Cotton_A_10449_CDS 369 492 369 493 PF14432.6 DYW_deaminase Family 1 126 127 146.2 4.3e-43 1 CL0109
Cotton_A_07235_CDS 70 156 58 159 PF00072.24 Response_reg Domain 24 109 112 65.8 3.6e-18 1 CL0304
Cotton_A_07235_CDS 232 282 232 282 PF00249.31 Myb_DNA-binding Domain 1 46 46 28.8 1e-06 1 CL0123
Cotton_A_24701_CDS 1 354 1 354 PF00067.22 p450 Domain 54 411 463 224.6 2.1e-66 1 No_clan
Cotton_A_03970_CDS 2 207 1 208 PF00664.23 ABC_membrane Family 67 273 274 163.5 7.6e-48 1 CL0241
Cotton_A_03970_CDS 278 424 275 424 PF00005.27 ABC_tran Domain 4 137 137 121.3 3.9e-35 1 CL0023
Cotton_A_03970_CDS 601 872 601 874 PF00664.23 ABC_membrane Family 1 272 274 201.1 2.6e-59 1 CL0241
Cotton_A_03970_CDS 942 1091 941 1091 PF00005.27 ABC_tran Domain 2 137 137 117.1 8e-34 1 CL0023
Cotton_A_06156_CDS 108 164 107 165 PF02701.15 zf-Dof Family 2 58 59 108.3 1.5e-31 1 No_clan
Cotton_A_00992_CDS 20 55 20 56 PF01394.20 Clathrin_propel Repeat 1 36 37 30.4 3.1e-07 1 CL0020
Cotton_A_00992_CDS 167 208 165 208 PF01394.20 Clathrin_propel Repeat 3 37 37 37.5 1.7e-09 1 CL0020
Cotton_A_00992_CDS 355 378 355 378 PF09268.10 Clathrin-link Family 1 24 24 34.2 1.1e-08 1 CL0020
Cotton_A_00992_CDS 380 445 380 445 PF13838.6 Clathrin_H_link Domain 1 66 66 103.1 5.5e-30 1 CL0020
Cotton_A_00992_CDS 568 701 563 704 PF00637.20 Clathrin Family 7 140 143 77.8 7.1e-22 1 CL0020
Cotton_A_00992_CDS 712 851 711 852 PF00637.20 Clathrin Family 2 142 143 74.9 5.5e-21 1 CL0020
Cotton_A_00992_CDS 861 994 858 996 PF00637.20 Clathrin Family 4 141 143 101.0 5.1e-29 1 CL0020
Cotton_A_00992_CDS 1004 1143 1004 1147 PF00637.20 Clathrin Family 1 138 143 109.2 1.5e-31 1 CL0020
Cotton_A_00992_CDS 1158 1292 1153 1293 PF00637.20 Clathrin Family 6 142 143 89.1 2.4e-25 1 CL0020
Cotton_A_00992_CDS 1304 1442 1299 1444 PF00637.20 Clathrin Family 6 141 143 97.7 5.3e-28 1 CL0020
Cotton_A_00992_CDS 1451 1590 1448 1590 PF00637.20 Clathrin Family 4 143 143 100.6 6.6e-29 1 CL0020
Cotton_A_37069_CDS 29 481 27 493 PF00067.22 p450 Domain 3 448 463 191.7 1.9e-56 1 No_clan
Cotton_A_14321_CDS 513 540 513 541 PF08159.12 NUC153 Domain 1 28 29 46.0 3.4e-12 1 No_clan
Cotton_A_31070_CDS 33 107 24 114 PF00234.22 Tryp_alpha_amyl Family 1 83 87 34.7 1.8e-08 1 CL0482
Cotton_A_17383_CDS 9 215 9 217 PF04654.12 DUF599 Family 1 208 210 263.2 1.3e-78 1 No_clan
Cotton_A_05573_CDS 29 74 27 76 PF00249.31 Myb_DNA-binding Domain 3 44 46 27.9 2e-06 1 CL0123
Cotton_A_05573_CDS 137 181 135 182 PF00249.31 Myb_DNA-binding Domain 3 45 46 46.5 3.1e-12 1 CL0123
Cotton_A_00533_CDS 17 113 17 113 PF00428.19 Ribosomal_60s Family 1 88 88 90.4 8.1e-26 1 No_clan
Cotton_A_26803_CDS 57 319 57 324 PF00295.17 Glyco_hydro_28 Domain 1 259 325 243.5 2.9e-72 1 CL0268
Cotton_A_04235_CDS 5 74 2 113 PF00861.22 Ribosomal_L18p Family 23 88 116 34.2 2.7e-08 1 CL0267
Cotton_A_14894_CDS 6 447 4 447 PF02458.15 Transferase Family 3 434 434 282.6 4.5e-84 1 CL0149
Cotton_A_33277_CDS 1 300 1 302 PF03105.19 SPX Domain 1 382 384 223.4 8.6e-66 1 No_clan
Cotton_A_33277_CDS 391 726 391 726 PF03124.14 EXS Family 1 331 331 287.9 1.1e-85 1 CL0182
Cotton_A_22466_CDS 167 370 152 390 PF00931.22 NB-ARC Domain 16 229 252 163.3 5.7e-48 1 CL0023
Cotton_A_24092_CDS 345 466 344 466 PF09273.11 Rubis-subs-bind Domain 2 129 129 79.4 3.8e-22 1 No_clan
Cotton_A_25495_CDS 55 404 52 405 PF00155.21 Aminotran_1_2 Domain 4 362 363 227.7 2.4e-67 1 CL0061
Cotton_A_19576_CDS 20 90 19 124 PF13947.6 GUB_WAK_bind Domain 2 73 106 48.0 1.8e-12 1 No_clan
Cotton_A_19576_CDS 214 254 214 254 PF07645.15 EGF_CA Domain 1 42 42 29.2 7.8e-07 1 CL0001
Cotton_A_14931_CDS 26 261 26 295 PF00561.20 Abhydrolase_1 Domain 1 227 257 76.3 2.8e-21 1 CL0028
Cotton_A_28455_CDS 11 54 10 55 PF00319.18 SRF-TF Domain 2 45 48 66.0 1.5e-18 1 No_clan
Cotton_A_32133_CDS 378 440 364 440 PF16135.5 Jas Family 17 76 76 28.5 1.3e-06 1 No_clan
Cotton_A_01628_CDS 60 82 60 82 PF00096.26 zf-C2H2 Domain 1 23 23 17.1 0.0055 1 CL0361
Cotton_A_20936_CDS 45 392 35 392 PF12819.7 Malectin_like Domain 12 336 336 128.2 3.8e-37 1 CL0202
Cotton_A_30491_CDS 116 317 106 317 PF12706.7 Lactamase_B_2 Domain 32 201 201 47.1 1.9e-12 1 CL0381
Cotton_A_29366_CDS 18 306 14 306 PF03151.16 TPT Family 5 290 290 88.2 6.1e-25 1 CL0184
Cotton_A_31059_CDS 73 172 73 173 PF03168.13 LEA_2 Domain 2 100 101 36.2 6.7e-09 1 CL0159
Cotton_A_18376_CDS 8 110 7 113 PF14226.6 DIOX_N Family 2 116 118 100.8 8.2e-29 1 CL0029
Cotton_A_18376_CDS 166 265 161 265 PF03171.20 2OG-FeII_Oxy Domain 7 101 101 71.1 8.5e-20 1 CL0029
Cotton_A_27807_CDS 4 62 3 64 PF00035.26 dsrm Domain 2 60 67 31.3 2.6e-07 1 CL0196
Cotton_A_31989_CDS 611 983 610 985 PF00999.21 Na_H_Exchanger Family 3 379 381 202.6 8.1e-60 1 CL0064
Cotton_A_31989_CDS 1016 1129 1016 1131 PF02254.18 TrkA_N Domain 1 114 116 70.0 1.9e-19 1 CL0063
Cotton_A_07278_CDS 31 111 31 112 PF13774.6 Longin Domain 1 83 84 69.5 1.8e-19 1 No_clan
Cotton_A_07278_CDS 127 218 126 221 PF00957.21 Synaptobrevin Family 2 87 89 68.4 3.4e-19 1 CL0445
Cotton_A_21241_CDS 6 112 2 120 PF00955.21 HCO3_cotransp Family 6 110 508 80.0 1.6e-22 1 CL0062
Cotton_A_30451_CDS 280 349 279 351 PF04564.15 U-box Domain 2 71 73 68.5 4.2e-19 1 CL0229
Cotton_A_30451_CDS 493 650 476 672 PF04826.13 Arm_2 Family 28 182 254 21.4 0.00014 1 CL0020
Cotton_A_37114_CDS 37 296 36 296 PF05910.12 DUF868 Family 2 279 279 259.1 5.4e-77 1 No_clan
Cotton_A_07542_CDS 61 112 59 112 PF01192.22 RNA_pol_Rpb6 Family 3 49 49 60.9 8.1e-17 1 No_clan
Cotton_A_13782_CDS 148 249 137 256 PF01210.23 NAD_Gly3P_dh_N Family 57 148 157 36.2 5.6e-09 1 CL0063
Cotton_A_13782_CDS 276 430 276 432 PF07479.14 NAD_Gly3P_dh_C Domain 1 140 142 79.0 4e-22 1 CL0106
Cotton_A_00791_CDS 68 167 66 168 PF00085.20 Thioredoxin Domain 3 102 103 79.2 1.9e-22 1 CL0172
Cotton_A_13170_CDS 152 232 146 235 PF03908.13 Sec20 Family 9 89 92 30.7 2.2e-07 1 CL0147
Cotton_A_00656_CDS 30 243 7 256 PF03896.16 TRAP_alpha Family 41 259 285 96.8 1.2e-27 1 No_clan
Cotton_A_13142_CDS 8 138 7 147 PF00335.20 Tetraspanin Family 2 106 229 54.6 1.2e-14 1 CL0347
Cotton_A_16886_CDS 83 464 79 467 PF00999.21 Na_H_Exchanger Family 6 379 381 135.7 1.8e-39 1 CL0064
Cotton_A_04255_CDS 71 390 68 392 PF00520.31 Ion_trans Family 4 243 245 105.5 2.5e-30 1 CL0030
Cotton_A_04255_CDS 486 574 483 579 PF00027.29 cNMP_binding Domain 6 84 89 32.6 6.3e-08 1 CL0029
Cotton_A_33784_CDS 45 69 16 69 PF03765.15 CRAL_TRIO_N Domain 30 54 54 31.2 1.9e-07 1 CL0214
Cotton_A_33784_CDS 90 242 88 242 PF00650.20 CRAL_TRIO Domain 3 159 159 122.5 1.3e-35 1 CL0512
Cotton_A_04376_CDS 8 46 7 50 PF00646.33 F-box Domain 2 40 48 27.4 2.1e-06 1 CL0271
Cotton_A_04376_CDS 161 185 161 185 PF07723.13 LRR_2 Repeat 1 26 26 20.9 0.0004 1 CL0022
Cotton_A_04376_CDS 357 397 355 397 PF08387.10 FBD Family 4 46 46 29.2 6.1e-07 1 No_clan
Cotton_A_30645_CDS 41 153 39 155 PF07732.15 Cu-oxidase_3 Domain 3 117 119 139.4 5.1e-41 1 CL0026
Cotton_A_30645_CDS 166 316 165 318 PF00394.22 Cu-oxidase Domain 2 157 159 143.1 7.9e-42 1 CL0026
Cotton_A_30645_CDS 439 559 419 561 PF07731.14 Cu-oxidase_2 Domain 23 135 137 139.9 4.1e-41 1 CL0026
Cotton_A_26535_CDS 26 292 26 296 PF00069.25 Pkinase Domain 1 258 264 165.6 1.4e-48 1 CL0016
Cotton_A_18515_CDS 17 93 3 95 PF00125.24 Histone Domain 52 129 131 50.5 2.5e-13 1 CL0012
Cotton_A_18515_CDS 96 129 96 130 PF16211.5 Histone_H2A_C Family 1 34 35 67.4 6.4e-19 1 No_clan
Cotton_A_18034_CDS 167 204 166 204 PF00400.32 WD40 Repeat 2 38 38 40.7 2.5e-10 1 CL0186
Cotton_A_18034_CDS 210 246 208 246 PF00400.32 WD40 Repeat 3 38 38 23.5 7e-05 1 CL0186
Cotton_A_18034_CDS 251 288 250 288 PF00400.32 WD40 Repeat 2 38 38 27.9 2.9e-06 1 CL0186
Cotton_A_18034_CDS 297 330 290 330 PF00400.32 WD40 Repeat 6 38 38 23.7 6.2e-05 1 CL0186
Cotton_A_18034_CDS 434 463 416 463 PF00400.32 WD40 Repeat 12 38 38 13.8 0.085 1 CL0186
Cotton_A_12968_CDS 15 74 14 74 PF08154.12 NLE Domain 2 65 65 41.5 1.4e-10 1 CL0072
Cotton_A_12968_CDS 102 139 101 139 PF00400.32 WD40 Repeat 2 38 38 36.0 7.7e-09 1 CL0186
Cotton_A_12968_CDS 145 181 143 181 PF00400.32 WD40 Repeat 3 38 38 31.3 2.5e-07 1 CL0186
Cotton_A_12968_CDS 192 229 186 229 PF00400.32 WD40 Repeat 7 38 38 19.7 0.0011 1 CL0186
Cotton_A_12968_CDS 234 269 233 270 PF00400.32 WD40 Repeat 2 37 38 26.2 9.7e-06 1 CL0186
Cotton_A_12968_CDS 274 347 274 348 PF00400.32 WD40 Repeat 1 37 38 13.8 0.085 1 CL0186
Cotton_A_12968_CDS 359 391 353 391 PF00400.32 WD40 Repeat 7 38 38 34.4 2.6e-08 1 CL0186
Cotton_A_12968_CDS 397 433 395 433 PF00400.32 WD40 Repeat 3 38 38 33.4 5.2e-08 1 CL0186
Cotton_A_12968_CDS 441 474 437 475 PF00400.32 WD40 Repeat 5 37 38 29.4 9.5e-07 1 CL0186
Cotton_A_12070_CDS 53 148 52 150 PF00153.27 Mito_carr Family 2 95 97 70.4 9.2e-20 1 No_clan
Cotton_A_12070_CDS 165 248 161 252 PF00153.27 Mito_carr Family 7 93 97 82.2 1.9e-23 1 No_clan
Cotton_A_12070_CDS 256 348 254 350 PF00153.27 Mito_carr Family 3 94 97 79.6 1.2e-22 1 No_clan
Cotton_A_16779_CDS 20 69 19 70 PF00847.20 AP2 Domain 2 53 54 51.1 1.2e-13 1 CL0081
Cotton_A_37913_CDS 91 249 91 249 PF04759.13 DUF617 Family 1 163 163 228.1 5.9e-68 1 No_clan
Cotton_A_35344_CDS 123 152 123 157 PF02151.19 UVR Family 1 30 36 22.0 9.9e-05 1 CL0671
Cotton_A_35344_CDS 518 647 516 647 PF12014.8 DUF3506 Family 3 139 139 86.5 1.6e-24 1 No_clan
Cotton_A_03077_CDS 7 65 3 80 PF15663.5 zf-CCCH_3 Family 3 59 110 42.8 5e-11 1 CL0537
Cotton_A_22644_CDS 73 357 73 357 PF00069.25 Pkinase Domain 1 264 264 219.0 7.2e-65 1 CL0016
Cotton_A_17548_CDS 81 170 81 170 PF01782.18 RimM Domain 1 84 84 72.7 2.1e-20 1 CL0575
Cotton_A_17548_CDS 176 270 176 271 PF05239.16 PRC Domain 1 78 79 32.7 5.7e-08 1 CL0350
Cotton_A_19200_CDS 13 96 2 97 PF13456.6 RVT_3 Domain 39 123 124 69.0 3e-19 1 CL0219
Cotton_A_08493_CDS 16 176 16 177 PF00071.22 Ras Domain 1 161 162 203.6 1.4e-60 1 CL0023
Cotton_A_15501_CDS 268 431 249 436 PF00201.18 UDPGT Family 270 420 499 77.3 1e-21 1 CL0113
Cotton_A_22979_CDS 6 293 2 293 PF03151.16 TPT Family 6 290 290 162.1 1.7e-47 1 CL0184
Cotton_A_19219_CDS 14 122 14 122 PF16740.5 SKA2 Domain 1 110 110 142.6 3.7e-42 1 No_clan
Cotton_A_06087_CDS 111 136 111 137 PF13912.6 zf-C2H2_6 Domain 1 26 27 47.2 1.5e-12 1 CL0361
Cotton_A_06087_CDS 169 194 169 195 PF13912.6 zf-C2H2_6 Domain 1 26 27 47.5 1.1e-12 1 CL0361
Cotton_A_26515_CDS 114 173 113 174 PF02297.17 COX6B Domain 2 75 76 59.7 2.4e-16 1 CL0351
Cotton_A_27250_CDS 1 64 1 66 PF04857.20 CAF1 Family 4 68 319 25.5 6.9e-06 1 CL0219
Cotton_A_30672_CDS 2 84 1 85 PF01263.20 Aldose_epim Family 216 300 301 65.0 6.6e-18 1 CL0103
Cotton_A_28956_CDS 7 85 7 120 PF05564.12 Auxin_repressed Family 1 65 118 39.1 1e-09 1 No_clan
Cotton_A_35297_CDS 93 361 93 364 PF07082.11 DUF1350 Family 1 211 250 185.8 8.3e-55 1 CL0028
Cotton_A_17679_CDS 99 141 97 141 PF13639.6 zf-RING_2 Domain 3 44 44 53.1 3e-14 1 CL0229
Cotton_A_31007_CDS 33 51 33 51 PF08137.12 DVL Family 1 19 19 44.3 1.2e-11 1 No_clan
Cotton_A_24547_CDS 5 228 4 228 PF00195.19 Chal_sti_synt_N Domain 2 225 225 417.8 9e-126 1 CL0046
Cotton_A_24547_CDS 238 387 238 388 PF02797.15 Chal_sti_synt_C Domain 1 150 151 242.4 1.6e-72 1 CL0046
Cotton_A_24297_CDS 3 216 1 216 PF00141.23 peroxidase Domain 30 229 229 224.6 1.3e-66 1 CL0617
Cotton_A_22558_CDS 55 182 53 183 PF01565.23 FAD_binding_4 Domain 3 138 139 60.9 1.1e-16 1 CL0077
Cotton_A_22558_CDS 220 316 217 318 PF02873.16 MurB_C Domain 4 118 120 107.8 3.5e-31 1 No_clan
Cotton_A_34215_CDS 28 101 5 103 PF05915.12 DUF872 Family 42 113 115 58.3 7.5e-16 1 No_clan
Cotton_A_12829_CDS 216 305 216 305 PF17958.1 EF-hand_13 Domain 1 90 90 114.3 1.7e-33 1 CL0220
Cotton_A_12829_CDS 320 420 320 421 PF13499.6 EF-hand_7 Domain 1 70 71 68.4 5.3e-19 1 CL0220
Cotton_A_09434_CDS 82 353 78 353 PF07714.17 Pkinase_Tyr Domain 5 259 259 116.3 1.4e-33 1 CL0016
Cotton_A_11105_CDS 28 479 27 479 PF00083.24 Sugar_tr Family 2 452 452 360.9 1e-107 1 CL0015
Cotton_A_01939_CDS 95 168 95 169 PF03110.14 SBP Domain 1 74 75 104.0 3.8e-30 1 No_clan
Cotton_A_36538_CDS 55 157 55 158 PF08241.12 Methyltransf_11 Domain 1 95 96 58.6 7.4e-16 1 CL0063
Cotton_A_23303_CDS 983 1112 983 1114 PF00004.29 AAA Domain 1 130 132 125.8 1.5e-36 1 CL0023
Cotton_A_23303_CDS 1136 1172 1136 1179 PF17862.1 AAA_lid_3 Domain 1 37 45 41.4 8.8e-11 1 CL0671
Cotton_A_16678_CDS 39 424 38 424 PF00155.21 Aminotran_1_2 Domain 2 363 363 335.3 4.6e-100 1 CL0061
Cotton_A_07472_CDS 524 577 524 577 PF08766.11 DEK_C Domain 1 54 54 53.6 1.5e-14 1 No_clan
Cotton_A_16109_CDS 42 128 42 129 PF05768.14 DUF836 Domain 1 81 82 71.0 8.2e-20 1 CL0172
Cotton_A_03022_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 57.8 8.9e-16 1 CL0123
Cotton_A_03022_CDS 67 112 67 112 PF00249.31 Myb_DNA-binding Domain 1 46 46 53.2 2.4e-14 1 CL0123
Cotton_A_18673_CDS 253 326 252 326 PF02201.18 SWIB Domain 6 74 74 46.5 2.5e-12 1 No_clan
Cotton_A_18673_CDS 385 483 385 484 PF03126.18 Plus-3 Domain 1 108 109 57.4 1.8e-15 1 No_clan
Cotton_A_18673_CDS 779 1105 779 1106 PF05212.12 DUF707 Family 1 295 296 482.2 5.5e-145 1 No_clan
Cotton_A_31489_CDS 1 203 1 203 PF07231.12 Hs1pro-1_N Family 1 185 185 293.6 5.3e-88 1 No_clan
Cotton_A_31489_CDS 206 464 206 465 PF07014.12 Hs1pro-1_C Family 1 259 260 451.7 7.3e-136 1 CL0380
Cotton_A_36118_CDS 246 281 245 281 PF00400.32 WD40 Repeat 2 37 38 19.5 0.0013 1 CL0186
Cotton_A_36118_CDS 293 327 290 328 PF00400.32 WD40 Repeat 4 37 38 15.8 0.02 1 CL0186
Cotton_A_36118_CDS 341 371 337 372 PF00400.32 WD40 Repeat 6 37 38 18.6 0.0025 1 CL0186
Cotton_A_36118_CDS 380 422 379 422 PF00400.32 WD40 Repeat 2 38 38 15.1 0.033 1 CL0186
Cotton_A_27639_CDS 1 73 1 93 PF07714.17 Pkinase_Tyr Domain 83 152 259 40.3 2.2e-10 1 CL0016
Cotton_A_03932_CDS 14 108 13 112 PF03094.15 Mlo Family 2 96 479 129.7 9.9e-38 1 No_clan
Cotton_A_03932_CDS 110 447 105 466 PF03094.15 Mlo Family 123 462 479 489.6 7.4e-147 1 No_clan
Cotton_A_14696_CDS 44 503 44 508 PF00067.22 p450 Domain 1 457 463 345.5 4.5e-103 1 No_clan
Cotton_A_06319_CDS 67 406 66 407 PF05147.13 LANC_like Family 2 351 352 317.5 7.2e-95 1 CL0059
Cotton_A_32905_CDS 17 122 10 147 PF02458.15 Transferase Family 10 115 434 65.9 2.6e-18 1 CL0149
Cotton_A_26880_CDS 34 120 34 145 PF02469.22 Fasciclin Domain 1 92 128 26.6 5.5e-06 1 No_clan
Cotton_A_33472_CDS 175 260 174 260 PF04433.17 SWIRM Domain 2 89 89 78.0 5.3e-22 1 CL0123
Cotton_A_33472_CDS 396 438 394 439 PF00249.31 Myb_DNA-binding Domain 3 45 46 41.5 1.1e-10 1 CL0123
Cotton_A_33472_CDS 559 632 558 636 PF16495.5 SWIRM-assoc_1 Family 2 75 84 84.8 2.9e-24 1 No_clan
Cotton_A_34715_CDS 11 50 10 56 PF00319.18 SRF-TF Domain 2 41 48 54.2 7.3e-15 1 No_clan
Cotton_A_27086_CDS 212 279 212 279 PF00462.24 Glutaredoxin Domain 1 60 60 46.7 2.8e-12 1 CL0172
Cotton_A_24462_CDS 78 161 77 161 PF14159.6 CAAD Domain 2 85 85 105.8 7.3e-31 1 No_clan
Cotton_A_23384_CDS 9 53 9 54 PF03107.16 C1_2 Domain 1 46 47 32.8 6.3e-08 1 CL0006
Cotton_A_03877_CDS 56 149 56 150 PF06749.12 DUF1218 Family 1 90 91 99.4 1.2e-28 1 No_clan
Cotton_A_12315_CDS 55 314 50 316 PF07714.17 Pkinase_Tyr Domain 7 257 259 103.1 1.5e-29 1 CL0016
Cotton_A_26365_CDS 1 185 1 185 PF14009.6 DUF4228 Family 1 179 179 107.5 9.8e-31 1 No_clan
Cotton_A_14371_CDS 48 164 5 165 PF00179.26 UQ_con Domain 21 139 140 164.9 8.2e-49 1 CL0208
Cotton_A_31174_CDS 211 330 210 336 PF00931.22 NB-ARC Domain 2 125 252 67.2 1.3e-18 1 CL0023
Cotton_A_31174_CDS 361 474 353 475 PF00931.22 NB-ARC Domain 130 251 252 36.0 4.2e-09 1 CL0023
Cotton_A_28197_CDS 207 276 206 276 PF03106.15 WRKY Domain 2 59 59 67.0 1.3e-18 1 CL0274
Cotton_A_12836_CDS 9 266 9 266 PF00069.25 Pkinase Domain 1 264 264 218.6 9.2e-65 1 CL0016
Cotton_A_37248_CDS 124 362 124 362 PF04788.12 DUF620 Family 1 243 243 372.1 1.1e-111 1 No_clan
Cotton_A_21679_CDS 211 580 211 581 PF03514.14 GRAS Family 1 373 374 427.5 3.9e-128 1 CL0063
Cotton_A_26942_CDS 23 87 23 89 PF03810.19 IBN_N Family 1 72 74 55.4 4.4e-15 1 CL0020
Cotton_A_20938_CDS 98 191 98 192 PF01453.24 B_lectin Domain 1 104 105 82.7 2.3e-23 1 No_clan
Cotton_A_20938_CDS 225 339 225 341 PF00954.20 S_locus_glycop Domain 1 109 111 83.3 1.6e-23 1 No_clan
Cotton_A_20938_CDS 515 787 513 791 PF00069.25 Pkinase Domain 4 258 264 149.1 1.5e-43 1 CL0016
Cotton_A_01719_CDS 41 158 40 158 PF05071.16 NDUFA12 Family 2 96 96 89.8 1.5e-25 1 No_clan
Cotton_A_00115_CDS 9 44 7 44 PF00400.32 WD40 Repeat 4 37 38 18.1 0.0036 1 CL0186
Cotton_A_00115_CDS 52 87 49 87 PF00400.32 WD40 Repeat 4 38 38 21.4 0.00033 1 CL0186
Cotton_A_00115_CDS 93 129 91 129 PF00400.32 WD40 Repeat 3 38 38 32.0 1.4e-07 1 CL0186
Cotton_A_00115_CDS 135 171 133 171 PF00400.32 WD40 Repeat 3 38 38 42.6 6.5e-11 1 CL0186
Cotton_A_00115_CDS 175 213 175 213 PF00400.32 WD40 Repeat 1 38 38 31.9 1.5e-07 1 CL0186
Cotton_A_00115_CDS 685 842 684 842 PF13925.6 Katanin_con80 Domain 2 160 160 179.3 5.5e-53 1 No_clan
Cotton_A_38279_CDS 34 155 32 155 PF04852.12 DUF640 Family 5 126 126 218.7 1.9e-65 1 No_clan
Cotton_A_28708_CDS 37 111 37 112 PF00935.19 Ribosomal_L44 Family 1 75 76 119.6 5.9e-35 1 CL0167
Cotton_A_09568_CDS 33 189 28 202 PF04525.12 LOR Domain 11 175 187 173.7 3e-51 1 CL0395
Cotton_A_13759_CDS 232 720 232 720 PF03141.16 Methyltransf_29 Family 1 506 506 626.0 4.4e-188 1 CL0063
Cotton_A_37291_CDS 5 29 5 29 PF06943.12 zf-LSD1 Domain 1 25 25 24.3 2.1e-05 1 No_clan
Cotton_A_37291_CDS 71 344 71 347 PF00656.22 Peptidase_C14 Domain 1 244 248 210.8 3.1e-62 1 CL0093
Cotton_A_07947_CDS 65 263 65 264 PF00485.18 PRK Domain 1 196 197 260.1 1.2e-77 1 CL0023
Cotton_A_21922_CDS 22 347 22 347 PF00009.27 GTP_EFTU Domain 1 194 194 218.2 7.2e-65 1 CL0023
Cotton_A_21922_CDS 397 472 396 473 PF03144.25 GTP_EFTU_D2 Domain 2 73 74 43.0 4.5e-11 1 CL0575
Cotton_A_21922_CDS 492 554 490 561 PF14492.6 EFG_II Domain 4 67 75 45.6 5.4e-12 1 CL0437
Cotton_A_21922_CDS 616 727 610 727 PF03764.18 EFG_IV Domain 11 121 121 107.4 3.8e-31 1 CL0329
Cotton_A_21922_CDS 729 815 729 817 PF00679.24 EFG_C Domain 1 86 89 72.8 1.7e-20 1 CL0437
Cotton_A_31171_CDS 44 117 44 117 PF13793.6 Pribosyltran_N Domain 1 74 116 94.2 4.9e-27 1 CL0533
Cotton_A_07789_CDS 192 318 192 319 PF02338.19 OTU Family 1 127 127 92.7 2.5e-26 1 CL0125
Cotton_A_16628_CDS 163 241 163 241 PF01357.21 Pollen_allerg_1 Domain 1 80 80 77.6 5.3e-22 1 CL0159
Cotton_A_38090_CDS 409 511 407 512 PF03763.13 Remorin_C Family 3 105 107 117.7 2e-34 1 No_clan
Cotton_A_17069_CDS 151 415 148 418 PF00069.25 Pkinase Domain 4 260 264 159.8 8e-47 1 CL0016
Cotton_A_18797_CDS 65 126 64 126 PF05498.11 RALF Family 2 65 65 107.1 6.4e-31 1 No_clan
Cotton_A_20754_CDS 1 370 1 370 PF00297.22 Ribosomal_L3 Family 1 369 369 642.7 1.6e-193 1 CL0575
Cotton_A_30139_CDS 74 136 67 136 PF05498.11 RALF Family 8 65 65 74.2 1.2e-20 1 No_clan
Cotton_A_09800_CDS 63 485 63 487 PF05577.12 Peptidase_S28 Domain 1 432 434 293.8 2e-87 1 CL0028
Cotton_A_01546_CDS 7 177 7 178 PF00071.22 Ras Domain 1 161 162 175.5 6.2e-52 1 CL0023
Cotton_A_02512_CDS 20 166 7 183 PF12999.7 PRKCSH-like Family 13 158 176 123.6 7.4e-36 1 No_clan
Cotton_A_02512_CDS 455 598 447 606 PF13015.6 PRKCSH_1 Family 9 146 154 99.2 1.8e-28 1 CL0226
Cotton_A_07871_CDS 63 136 58 136 PF03330.18 DPBB_1 Domain 6 83 83 51.9 6.8e-14 1 CL0199
Cotton_A_07871_CDS 144 227 144 228 PF01357.21 Pollen_allerg_1 Domain 1 79 80 55.1 5.9e-15 1 CL0159
Cotton_A_19600_CDS 183 330 182 331 PF00929.24 RNase_T Family 2 164 165 38.2 2.1e-09 1 CL0219
Cotton_A_29396_CDS 18 88 18 88 PF00076.22 RRM_1 Domain 1 70 70 71.1 5e-20 1 CL0221
Cotton_A_16765_CDS 7 71 6 73 PF03893.16 Lipase3_N Domain 2 74 76 74.2 6.1e-21 1 CL0028
Cotton_A_16765_CDS 106 241 106 244 PF01764.25 Lipase_3 Family 1 138 142 65.5 4.5e-18 1 CL0028
Cotton_A_35263_CDS 219 303 219 310 PF07526.11 POX Domain 1 90 136 64.8 1.1e-17 1 No_clan
Cotton_A_30411_CDS 27 269 27 280 PF00067.22 p450 Domain 1 249 463 98.7 3.2e-28 1 No_clan
Cotton_A_27787_CDS 35 248 34 250 PF02779.24 Transket_pyr Domain 2 176 178 218.8 4.1e-65 1 CL0254
Cotton_A_27787_CDS 271 411 266 412 PF16870.5 OxoGdeHyase_C Family 9 151 152 169.5 3.9e-50 1 CL0591
Cotton_A_08755_CDS 22 52 22 52 PF00397.26 WW Domain 1 31 31 27.3 2.8e-06 1 CL0680
Cotton_A_36351_CDS 82 129 81 130 PF13041.6 PPR_2 Repeat 2 49 50 31.0 2.2e-07 1 CL0020
Cotton_A_36351_CDS 183 229 182 230 PF13041.6 PPR_2 Repeat 2 48 50 36.2 5.1e-09 1 CL0020
Cotton_A_36351_CDS 257 282 255 284 PF01535.20 PPR Family 3 28 31 15.0 0.022 1 CL0020
Cotton_A_36351_CDS 284 329 283 331 PF13041.6 PPR_2 Repeat 2 48 50 32.6 6.7e-08 1 CL0020
Cotton_A_36351_CDS 358 383 358 385 PF01535.20 PPR Family 4 29 31 16.9 0.0055 1 CL0020
Cotton_A_36351_CDS 386 407 386 414 PF01535.20 PPR Family 1 22 31 18.3 0.0019 1 CL0020
Cotton_A_36351_CDS 458 482 458 484 PF01535.20 PPR Family 4 28 31 17.8 0.0028 1 CL0020
Cotton_A_36351_CDS 486 516 486 516 PF01535.20 PPR Family 1 31 31 18.4 0.0017 1 CL0020
Cotton_A_36351_CDS 585 632 584 633 PF13041.6 PPR_2 Repeat 2 49 50 36.4 4.4e-09 1 CL0020
Cotton_A_36351_CDS 758 882 758 882 PF14432.6 DYW_deaminase Family 1 127 127 129.3 7.4e-38 1 CL0109
Cotton_A_28375_CDS 60 102 59 102 PF03107.16 C1_2 Domain 2 47 47 33.7 3.3e-08 1 CL0006
Cotton_A_28375_CDS 129 188 128 188 PF03107.16 C1_2 Domain 2 47 47 27.9 2.1e-06 1 CL0006
Cotton_A_28375_CDS 201 246 200 246 PF03107.16 C1_2 Domain 3 47 47 34.1 2.5e-08 1 CL0006
Cotton_A_28375_CDS 312 361 311 361 PF03107.16 C1_2 Domain 2 47 47 30.8 2.6e-07 1 CL0006
Cotton_A_40172_CDS 203 247 185 247 PF02234.19 CDI Family 4 49 49 61.7 5.4e-17 1 No_clan
Cotton_A_13555_CDS 1 39 1 39 PF18511.1 F-box_5 Domain 4 42 42 67.7 4.8e-19 1 CL0271
Cotton_A_13555_CDS 58 104 58 104 PF18791.1 Transp_inhibit Family 1 47 47 80.3 5e-23 1 No_clan
Cotton_A_32172_CDS 274 391 256 414 PF00201.18 UDPGT Family 275 377 499 70.3 1.4e-19 1 CL0113
Cotton_A_27217_CDS 45 79 41 79 PF00400.32 WD40 Repeat 5 38 38 21.5 0.00031 1 CL0186
Cotton_A_27217_CDS 84 121 83 121 PF00400.32 WD40 Repeat 2 38 38 33.9 3.8e-08 1 CL0186
Cotton_A_27217_CDS 126 163 125 163 PF00400.32 WD40 Repeat 2 38 38 31.8 1.7e-07 1 CL0186
Cotton_A_27217_CDS 198 231 195 232 PF00400.32 WD40 Repeat 5 37 38 20.8 0.00051 1 CL0186
Cotton_A_27217_CDS 241 276 238 276 PF00400.32 WD40 Repeat 4 38 38 23.1 9.5e-05 1 CL0186
Cotton_A_27217_CDS 341 767 337 768 PF04053.14 Coatomer_WDAD Family 5 444 445 437.1 8e-131 1 CL0186
Cotton_A_27217_CDS 814 1217 814 1217 PF06957.11 COPI_C Family 1 403 403 568.2 8.2e-171 1 CL0020
Cotton_A_24484_CDS 64 134 64 134 PF02672.15 CP12 Family 1 70 70 80.5 1.1e-22 1 No_clan
Cotton_A_29386_CDS 1 52 1 52 PF00006.25 ATP-synt_ab Domain 162 213 213 49.1 5.3e-13 1 CL0023
Cotton_A_23776_CDS 94 153 94 153 PF13891.6 zf-C3Hc3H Domain 1 63 63 60.6 1.4e-16 1 No_clan
Cotton_A_11051_CDS 6 258 4 259 PF00335.20 Tetraspanin Family 3 228 229 116.6 1.4e-33 1 CL0347
Cotton_A_38152_CDS 110 204 110 205 PF08241.12 Methyltransf_11 Domain 1 95 96 64.3 1.2e-17 1 CL0063
Cotton_A_20682_CDS 206 251 206 251 PF10533.9 Plant_zn_clust Domain 1 49 49 64.8 5e-18 1 No_clan
Cotton_A_20682_CDS 255 312 254 312 PF03106.15 WRKY Domain 2 59 59 92.7 1.2e-26 1 CL0274
Cotton_A_03290_CDS 40 203 40 203 PF04833.15 COBRA Family 1 165 165 236.8 1.1e-70 1 No_clan
Cotton_A_02985_CDS 70 299 69 307 PF05368.13 NmrA Family 2 225 233 37.5 1.9e-09 1 CL0063
Cotton_A_15720_CDS 54 92 54 92 PF04810.15 zf-Sec23_Sec24 Domain 1 39 39 56.8 1.7e-15 1 No_clan
Cotton_A_15720_CDS 124 389 122 389 PF04811.15 Sec23_trunk Domain 4 243 243 229.3 4.9e-68 1 CL0128
Cotton_A_15720_CDS 401 505 399 505 PF08033.12 Sec23_BS Domain 3 96 96 101.8 2.7e-29 1 No_clan
Cotton_A_15720_CDS 519 617 519 618 PF04815.15 Sec23_helical Domain 1 102 103 74.7 4.2e-21 1 No_clan
Cotton_A_15720_CDS 632 719 629 719 PF00626.22 Gelsolin Domain 4 76 76 53.2 2.1e-14 1 CL0092
Cotton_A_00494_CDS 32 340 31 343 PF00657.22 Lipase_GDSL Family 2 197 200 60.1 2.8e-16 1 CL0264
Cotton_A_39319_CDS 52 163 52 164 PF14226.6 DIOX_N Family 1 117 118 97.5 8.5e-28 1 CL0029
Cotton_A_39319_CDS 212 310 210 310 PF03171.20 2OG-FeII_Oxy Domain 3 101 101 92.7 1.6e-26 1 CL0029
Cotton_A_09309_CDS 100 167 97 167 PF00690.26 Cation_ATPase_N Domain 4 69 69 47.8 8.4e-13 1 No_clan
Cotton_A_09309_CDS 218 422 215 423 PF00122.20 E1-E2_ATPase Family 4 180 181 148.8 1.2e-43 1 No_clan
Cotton_A_09309_CDS 441 763 439 763 PF00702.26 Hydrolase Domain 3 210 210 62.6 6.3e-17 1 CL0137
Cotton_A_09309_CDS 834 1003 833 1004 PF00689.21 Cation_ATPase_C Family 2 181 182 164.6 1.9e-48 1 No_clan
Cotton_A_21936_CDS 759 1064 759 1064 PF05623.12 DUF789 Family 1 294 294 216.6 5.6e-64 1 No_clan
Cotton_A_22104_CDS 56 98 55 98 PF13639.6 zf-RING_2 Domain 2 44 44 49.4 4.3e-13 1 CL0229
Cotton_A_06787_CDS 31 224 29 224 PF01201.22 Ribosomal_S8e Family 2 137 137 180.4 1.8e-53 1 No_clan
Cotton_A_15550_CDS 14 171 13 171 PF04520.13 Senescence_reg Family 2 168 168 137.8 6.2e-40 1 No_clan
Cotton_A_13524_CDS 329 412 320 422 PF00201.18 UDPGT Family 325 408 499 74.0 1e-20 1 CL0113
Cotton_A_14226_CDS 36 87 35 88 PF14416.6 PMR5N Domain 2 52 53 78.4 3.6e-22 1 No_clan
Cotton_A_14226_CDS 89 355 89 356 PF13839.6 PC-Esterase Family 1 282 283 297.6 1.2e-88 1 CL0264
Cotton_A_10765_CDS 328 591 325 594 PF00069.25 Pkinase Domain 4 260 264 145.1 2.4e-42 1 CL0016
Cotton_A_13357_CDS 225 430 206 437 PF00201.18 UDPGT Family 225 419 499 76.9 1.4e-21 1 CL0113
Cotton_A_16540_CDS 272 309 271 309 PF00400.32 WD40 Repeat 2 38 38 30.7 3.8e-07 1 CL0186
Cotton_A_16540_CDS 315 350 313 351 PF00400.32 WD40 Repeat 3 37 38 25.6 1.5e-05 1 CL0186
Cotton_A_16540_CDS 355 396 355 396 PF00400.32 WD40 Repeat 1 38 38 30.1 5.9e-07 1 CL0186
Cotton_A_16540_CDS 426 457 419 458 PF00400.32 WD40 Repeat 8 37 38 14.9 0.038 1 CL0186
Cotton_A_16540_CDS 610 649 610 649 PF00400.32 WD40 Repeat 1 38 38 13.2 0.13 1 CL0186
Cotton_A_16540_CDS 1692 1746 1671 1750 PF00439.25 Bromodomain Domain 24 78 84 28.7 1.1e-06 1 No_clan
Cotton_A_33774_CDS 93 230 6 252 PF03839.16 Sec62 Family 36 183 217 55.8 4.5e-15 1 No_clan
Cotton_A_07200_CDS 42 339 41 339 PF01048.20 PNP_UDP_1 Domain 2 234 234 139.3 1.2e-40 1 CL0408
Cotton_A_03167_CDS 70 226 38 229 PF14802.6 TMEM192 Family 63 234 235 44.1 1.3e-11 1 No_clan
Cotton_A_34799_CDS 30 492 30 493 PF00759.19 Glyco_hydro_9 Domain 1 410 411 484.7 3.2e-145 1 CL0059
Cotton_A_20487_CDS 8 175 2 183 PF00854.21 PTR2 Family 193 353 395 74.4 7.4e-21 1 CL0015
Cotton_A_27159_CDS 139 415 137 431 PF03416.19 Peptidase_C54 Family 3 267 276 292.1 4.2e-87 1 CL0125
Cotton_A_12779_CDS 35 301 35 303 PF00069.25 Pkinase Domain 1 258 264 167.1 4.8e-49 1 CL0016
Cotton_A_01095_CDS 53 121 52 122 PF03735.14 ENT Family 2 69 70 94.3 3.4e-27 1 No_clan
Cotton_A_15350_CDS 35 506 35 507 PF00067.22 p450 Domain 1 462 463 356.3 2.3e-106 1 No_clan
Cotton_A_04215_CDS 14 218 12 242 PF00069.25 Pkinase Domain 3 201 264 157.2 5.1e-46 1 CL0016
Cotton_A_25248_CDS 43 305 41 305 PF09741.9 DUF2045 Family 3 233 233 226.7 2.5e-67 1 No_clan
Cotton_A_19612_CDS 80 365 77 375 PF03016.15 Exostosin Family 4 289 300 141.4 3.5e-41 1 No_clan
Cotton_A_05883_CDS 43 126 24 128 PF00072.24 Response_reg Domain 28 110 112 36.9 3.4e-09 1 CL0304
Cotton_A_40643_CDS 10 232 9 266 PF00069.25 Pkinase Domain 2 213 264 86.9 1.4e-24 1 CL0016
Cotton_A_37106_CDS 36 393 36 394 PF12819.7 Malectin_like Domain 1 335 336 104.1 8.1e-30 1 CL0202
Cotton_A_08735_CDS 5 52 5 52 PF00249.31 Myb_DNA-binding Domain 1 46 46 57.5 1.2e-15 1 CL0123
Cotton_A_08735_CDS 58 101 58 103 PF00249.31 Myb_DNA-binding Domain 1 44 46 54.0 1.3e-14 1 CL0123
Cotton_A_34350_CDS 25 188 17 190 PF13177.6 DNA_pol3_delta2 Domain 9 161 163 47.8 1.3e-12 1 CL0023
Cotton_A_14915_CDS 22 261 21 271 PF00139.19 Lectin_legB Domain 2 238 249 205.6 8.6e-61 1 CL0004
Cotton_A_14915_CDS 349 615 348 616 PF00069.25 Pkinase Domain 2 260 264 160.0 6.9e-47 1 CL0016
Cotton_A_13257_CDS 137 373 137 374 PF01896.19 DNA_primase_S Family 1 176 177 194.8 1.2e-57 1 CL0243
Cotton_A_04755_CDS 2 54 1 60 PF14541.6 TAXi_C Domain 96 154 161 29.3 6.2e-07 1 CL0129
Cotton_A_13525_CDS 245 405 236 416 PF00201.18 UDPGT Family 261 409 499 77.5 9e-22 1 CL0113
Cotton_A_11407_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 48.1 9.5e-13 1 CL0123
Cotton_A_11407_CDS 71 111 67 112 PF00249.31 Myb_DNA-binding Domain 5 45 46 49.4 3.9e-13 1 CL0123
Cotton_A_39497_CDS 15 126 15 139 PF00179.26 UQ_con Domain 1 112 140 74.2 7.7e-21 1 CL0208
Cotton_A_01533_CDS 41 285 38 285 PF00141.23 peroxidase Domain 2 229 229 261.2 8.2e-78 1 CL0617
Cotton_A_06835_CDS 1231 1454 1231 1454 PF02854.19 MIF4G Family 1 212 212 186.1 6.5e-55 1 CL0020
Cotton_A_19882_CDS 135 416 115 424 PF00295.17 Glyco_hydro_28 Domain 52 320 325 102.1 3e-29 1 CL0268
Cotton_A_23732_CDS 48 189 46 196 PF00106.25 adh_short Domain 3 140 195 91.6 4.1e-26 1 CL0063
Cotton_A_23732_CDS 200 254 197 258 PF00106.25 adh_short Domain 136 189 195 26.4 4e-06 1 CL0063
Cotton_A_37163_CDS 475 542 475 551 PF12253.8 CAF1A Family 1 71 76 74.5 5.6e-21 1 No_clan
Cotton_A_26600_CDS 121 311 112 313 PF01786.17 AOX Family 12 213 215 263.2 1.6e-78 1 CL0044
Cotton_A_00084_CDS 44 169 37 169 PF13326.6 PSII_Pbs27 Family 7 141 141 111.1 5.2e-32 1 No_clan
Cotton_A_23700_CDS 2 315 1 316 PF16913.5 PUNUT Family 6 321 322 367.0 8.4e-110 1 CL0184
Cotton_A_24027_CDS 182 256 179 257 PF07942.12 N2227 Family 4 79 272 81.0 8.1e-23 1 CL0063
Cotton_A_24027_CDS 258 289 256 291 PF07942.12 N2227 Family 167 198 272 44.5 1e-11 1 CL0063
Cotton_A_25831_CDS 26 221 25 223 PF01323.20 DSBA Domain 2 191 193 129.6 1.2e-37 1 CL0172
Cotton_A_05932_CDS 241 483 241 484 PF08323.11 Glyco_transf_5 Domain 1 243 244 220.9 2e-65 1 CL0113
Cotton_A_05932_CDS 541 685 535 699 PF00534.20 Glycos_transf_1 Family 11 152 172 61.9 5.4e-17 1 CL0113
Cotton_A_09206_CDS 14 252 14 253 PF13561.6 adh_short_C2 Domain 1 233 234 201.6 1.3e-59 1 CL0063
Cotton_A_14929_CDS 20 61 20 61 PF13445.6 zf-RING_UBOX Domain 1 39 39 38.0 1.2e-09 1 CL0229
Cotton_A_08300_CDS 1 236 1 237 PF13968.6 DUF4220 Family 92 346 347 130.6 8.5e-38 1 No_clan
Cotton_A_25284_CDS 216 379 202 403 PF00201.18 UDPGT Family 262 408 499 86.6 1.6e-24 1 CL0113
Cotton_A_20427_CDS 54 89 51 89 PF00400.32 WD40 Repeat 4 38 38 21.9 0.00023 1 CL0186
Cotton_A_20427_CDS 94 130 93 130 PF00400.32 WD40 Repeat 2 38 38 16.5 0.011 1 CL0186
Cotton_A_20427_CDS 179 214 178 214 PF00400.32 WD40 Repeat 2 38 38 14.5 0.049 1 CL0186
Cotton_A_20427_CDS 266 297 260 298 PF00400.32 WD40 Repeat 7 37 38 33.0 6.9e-08 1 CL0186
Cotton_A_13456_CDS 15 32 14 32 PF01535.20 PPR Family 14 31 31 11.1 0.39 1 CL0020
Cotton_A_13456_CDS 35 83 35 83 PF13041.6 PPR_2 Repeat 2 50 50 56.2 2.9e-15 1 CL0020
Cotton_A_13456_CDS 104 148 104 150 PF13041.6 PPR_2 Repeat 1 45 50 40.0 3.2e-10 1 CL0020
Cotton_A_08721_CDS 12 52 11 54 PF14555.6 UBA_4 Domain 2 41 43 37.3 1.7e-09 1 CL0214
Cotton_A_08721_CDS 177 256 173 256 PF13899.6 Thioredoxin_7 Domain 6 83 83 49.0 5e-13 1 CL0172
Cotton_A_00406_CDS 20 97 6 99 PF00125.24 Histone Domain 51 129 131 48.4 1.1e-12 1 CL0012
Cotton_A_00406_CDS 100 132 100 134 PF16211.5 Histone_H2A_C Family 1 33 35 64.3 5.9e-18 1 No_clan
Cotton_A_20756_CDS 23 86 22 86 PF05617.11 Prolamin_like Domain 2 71 71 65.0 5.1e-18 1 CL0482
Cotton_A_21539_CDS 73 119 70 119 PF00010.26 HLH Domain 5 53 53 41.1 1.2e-10 1 No_clan
Cotton_A_14439_CDS 27 490 26 490 PF00083.24 Sugar_tr Family 2 452 452 409.5 1.7e-122 1 CL0015
Cotton_A_29174_CDS 116 172 113 176 PF00170.21 bZIP_1 Family 4 60 64 39.4 4.8e-10 1 CL0018
Cotton_A_33988_CDS 4 232 2 240 PF05056.12 DUF674 Family 3 233 449 181.5 2.5e-53 1 No_clan
Cotton_A_08427_CDS 15 284 13 285 PF01263.20 Aldose_epim Family 3 300 301 202.2 1.1e-59 1 CL0103
Cotton_A_06223_CDS 74 176 74 182 PF03798.16 TRAM_LAG1_CLN8 Domain 1 95 198 58.6 6.6e-16 1 No_clan
Cotton_A_06486_CDS 16 97 6 98 PF00307.31 CH Domain 25 108 109 32.4 8.4e-08 1 CL0188
Cotton_A_06486_CDS 363 590 363 592 PF00225.23 Kinesin Domain 1 241 333 195.7 9.7e-58 1 CL0023
Cotton_A_06486_CDS 965 1058 963 1062 PF00307.31 CH Domain 3 87 109 29.4 7.2e-07 1 CL0188
Cotton_A_21502_CDS 115 265 109 270 PF07899.11 Frigida Family 17 178 289 93.2 1.7e-26 1 No_clan
Cotton_A_21502_CDS 308 409 299 413 PF07899.11 Frigida Family 10 119 289 43.3 2.7e-11 1 No_clan
Cotton_A_27996_CDS 121 142 118 145 PF00400.32 WD40 Repeat 15 36 38 12.7 0.18 1 CL0186
Cotton_A_27996_CDS 154 186 149 186 PF00400.32 WD40 Repeat 6 38 38 18.4 0.0029 1 CL0186
Cotton_A_23924_CDS 110 315 102 315 PF01823.19 MACPF Domain 10 209 209 84.9 8e-24 1 CL0293
Cotton_A_29966_CDS 31 202 24 203 PF04525.12 LOR Domain 13 186 187 171.5 1.4e-50 1 CL0395
Cotton_A_15478_CDS 61 172 60 173 PF00069.25 Pkinase Domain 77 187 264 131.3 4e-38 1 CL0016
Cotton_A_15478_CDS 221 256 220 256 PF00627.31 UBA Domain 2 37 37 29.6 4.6e-07 1 CL0214
Cotton_A_28193_CDS 21 83 21 83 PF00226.31 DnaJ Domain 1 63 63 90.4 5.7e-26 1 CL0392
Cotton_A_03668_CDS 119 168 119 186 PF01842.25 ACT Domain 1 53 67 39.1 4.6e-10 1 CL0070
Cotton_A_03668_CDS 330 380 329 389 PF01842.25 ACT Domain 2 52 67 29.4 5e-07 1 CL0070
Cotton_A_11357_CDS 73 247 73 247 PF07798.11 DUF1640 Family 1 175 175 232.3 3.6e-69 1 No_clan
Cotton_A_34845_CDS 64 276 64 277 PF01379.20 Porphobil_deam Domain 1 203 204 257.5 7e-77 1 CL0177
Cotton_A_34845_CDS 289 361 288 362 PF03900.15 Porphobil_deamC Domain 2 74 75 52.9 3.5e-14 1 No_clan
Cotton_A_06947_CDS 199 543 198 548 PF05701.11 WEMBL Family 2 344 562 457.6 6.6e-137 1 No_clan
Cotton_A_06947_CDS 556 733 542 733 PF05701.11 WEMBL Family 384 562 562 203.4 6.4e-60 1 No_clan
Cotton_A_18953_CDS 119 169 119 170 PF00847.20 AP2 Domain 1 53 54 44.5 1.4e-11 1 CL0081
Cotton_A_27077_CDS 51 110 50 110 PF13855.6 LRR_8 Repeat 2 61 61 28.0 1.4e-06 1 CL0022
Cotton_A_25768_CDS 20 306 16 306 PF03151.16 TPT Family 5 290 290 82.7 2.8e-23 1 CL0184
Cotton_A_27193_CDS 63 128 37 129 PF00149.28 Metallophos Domain 14 75 204 30.6 4.4e-07 1 CL0163
Cotton_A_25910_CDS 159 216 159 217 PF03106.15 WRKY Domain 1 58 59 82.3 2.2e-23 1 CL0274
Cotton_A_10648_CDS 71 355 71 355 PF00069.25 Pkinase Domain 1 264 264 217.6 1.9e-64 1 CL0016
Cotton_A_30362_CDS 23 297 10 298 PF03151.16 TPT Family 12 289 290 51.5 8.8e-14 1 CL0184
Cotton_A_08628_CDS 20 227 20 227 PF01734.22 Patatin Family 1 204 204 70.8 1.7e-19 1 CL0323
Cotton_A_20250_CDS 50 410 50 429 PF04563.15 RNA_pol_Rpb2_1 Family 1 188 203 172.4 8e-51 1 No_clan
Cotton_A_20250_CDS 201 377 200 377 PF04561.14 RNA_pol_Rpb2_2 Domain 2 190 190 76.3 2.3e-21 1 No_clan
Cotton_A_20250_CDS 454 518 454 518 PF04565.16 RNA_pol_Rpb2_3 Domain 1 68 68 68.9 3.1e-19 1 No_clan
Cotton_A_20250_CDS 555 614 555 616 PF04566.13 RNA_pol_Rpb2_4 Domain 1 60 62 81.8 3.2e-23 1 No_clan
Cotton_A_20250_CDS 637 677 637 677 PF04567.17 RNA_pol_Rpb2_5 Domain 1 58 58 37.0 3.8e-09 1 No_clan
Cotton_A_20250_CDS 684 1069 684 1069 PF00562.28 RNA_pol_Rpb2_6 Domain 1 390 390 394.5 5.1e-118 1 CL0410
Cotton_A_20250_CDS 1071 1161 1071 1163 PF04560.20 RNA_pol_Rpb2_7 Domain 1 85 87 107.7 3e-31 1 No_clan
Cotton_A_04361_CDS 57 121 57 122 PF01423.22 LSM Domain 1 66 67 61.6 4.2e-17 1 CL0527
Cotton_A_00486_CDS 14 234 13 234 PF00230.20 MIP Family 2 227 227 255.4 5e-76 1 No_clan
Cotton_A_18370_CDS 144 323 136 323 PF00544.19 Pec_lyase_C Domain 34 211 211 77.9 7.8e-22 1 CL0268
Cotton_A_34000_CDS 42 88 41 88 PF08263.12 LRRNT_2 Family 2 41 41 46.6 3e-12 1 No_clan
Cotton_A_34000_CDS 268 325 266 326 PF13855.6 LRR_8 Repeat 3 60 61 27.3 2.2e-06 1 CL0022
Cotton_A_34000_CDS 339 398 338 398 PF13855.6 LRR_8 Repeat 2 61 61 37.6 1.4e-09 1 CL0022
Cotton_A_34000_CDS 411 470 409 470 PF13855.6 LRR_8 Repeat 3 61 61 32.7 4.6e-08 1 CL0022
Cotton_A_34000_CDS 507 520 504 522 PF13516.6 LRR_6 Repeat 4 17 24 10.3 0.59 1 CL0022
Cotton_A_34000_CDS 624 682 622 682 PF13855.6 LRR_8 Repeat 3 61 61 34.0 1.8e-08 1 CL0022
Cotton_A_34000_CDS 809 864 804 864 PF13855.6 LRR_8 Repeat 6 61 61 31.2 1.4e-07 1 CL0022
Cotton_A_12963_CDS 17 90 2 102 PF18052.1 Rx_N Domain 17 90 93 73.8 1e-20 1 No_clan
Cotton_A_12963_CDS 178 387 164 408 PF00931.22 NB-ARC Domain 11 222 252 138.0 2.9e-40 1 CL0023
Cotton_A_13602_CDS 152 254 152 265 PF13238.6 AAA_18 Domain 1 90 130 29.9 6.8e-07 1 CL0023
Cotton_A_15847_CDS 8 139 8 140 PF12165.8 Alfin Family 1 126 127 199.8 9.6e-60 1 No_clan
Cotton_A_01042_CDS 148 206 148 206 PF00288.26 GHMP_kinases_N Family 1 66 66 31.6 1.4e-07 1 CL0329
Cotton_A_01042_CDS 237 442 237 443 PF18376.1 MDD_C Domain 1 186 187 206.9 2.2e-61 1 CL0677
Cotton_A_16549_CDS 188 216 186 216 PF01535.20 PPR Family 3 31 31 10.9 0.44 1 CL0020
Cotton_A_16549_CDS 221 267 221 267 PF13041.6 PPR_2 Repeat 4 50 50 58.8 4.3e-16 1 CL0020
Cotton_A_16549_CDS 397 425 396 426 PF01535.20 PPR Family 2 30 31 10.8 0.46 1 CL0020
Cotton_A_16549_CDS 429 477 428 477 PF13041.6 PPR_2 Repeat 2 50 50 56.2 2.9e-15 1 CL0020
Cotton_A_16549_CDS 498 546 498 547 PF13041.6 PPR_2 Repeat 1 49 50 62.3 3.6e-17 1 CL0020
Cotton_A_16549_CDS 569 616 568 617 PF13041.6 PPR_2 Repeat 2 49 50 50.7 1.5e-13 1 CL0020
Cotton_A_08357_CDS 24 316 23 320 PF00248.21 Aldo_ket_red Domain 2 289 294 249.6 3.8e-74 1 No_clan
Cotton_A_02661_CDS 7 121 7 126 PF05564.12 Auxin_repressed Family 1 109 118 45.6 9.5e-12 1 No_clan
Cotton_A_24893_CDS 1 94 1 94 PF00067.22 p450 Domain 270 367 463 79.4 2.3e-22 1 No_clan
Cotton_A_33506_CDS 22 302 22 302 PF04305.14 DUF455 Family 1 247 247 314.3 5.4e-94 1 CL0044
Cotton_A_16387_CDS 4 54 2 64 PF03004.14 Transposase_24 Family 3 54 142 27.9 2.1e-06 1 No_clan
Cotton_A_11794_CDS 56 89 55 89 PF05553.11 DUF761 Family 3 36 36 57.2 8.8e-16 1 No_clan
Cotton_A_25999_CDS 6 64 6 64 PF05641.12 Agenet Domain 1 61 61 52.5 4.9e-14 1 CL0049
Cotton_A_25999_CDS 327 371 325 379 PF03735.14 ENT Family 4 48 70 42.7 4.3e-11 1 No_clan
Cotton_A_14809_CDS 194 285 171 288 PF00307.31 CH Domain 24 105 109 56.9 1.9e-15 1 CL0188
Cotton_A_14809_CDS 318 418 317 421 PF00307.31 CH Domain 2 106 109 70.6 1.1e-19 1 CL0188
Cotton_A_14809_CDS 447 547 443 549 PF00307.31 CH Domain 6 107 109 65.1 5.7e-18 1 CL0188
Cotton_A_14809_CDS 569 669 564 672 PF00307.31 CH Domain 7 106 109 60.3 1.8e-16 1 CL0188
Cotton_A_18624_CDS 20 118 12 120 PF00651.31 BTB Domain 12 109 111 43.0 4.3e-11 1 CL0033
Cotton_A_18624_CDS 203 290 202 290 PF02135.16 zf-TAZ Family 2 75 75 45.5 7.5e-12 1 No_clan
Cotton_A_02111_CDS 8 204 7 204 PF08325.10 WLM Domain 2 191 191 211.6 1e-62 1 CL0126
Cotton_A_34927_CDS 15 109 15 109 PF12776.7 Myb_DNA-bind_3 Domain 1 96 96 89.0 3.1e-25 1 CL0123
Cotton_A_18176_CDS 10 95 8 95 PF08609.10 Fes1 Family 3 93 93 38.6 1.5e-09 1 No_clan
Cotton_A_32694_CDS 13 62 12 63 PF00847.20 AP2 Domain 2 53 54 47.8 1.2e-12 1 CL0081
Cotton_A_20286_CDS 159 276 155 279 PF06480.15 FtsH_ext Family 5 106 109 29.3 8.7e-07 1 No_clan
Cotton_A_20286_CDS 376 509 376 510 PF00004.29 AAA Domain 1 131 132 146.9 4.4e-43 1 CL0023
Cotton_A_20286_CDS 534 576 534 578 PF17862.1 AAA_lid_3 Domain 1 43 45 44.8 7.8e-12 1 CL0671
Cotton_A_20286_CDS 597 788 592 789 PF01434.18 Peptidase_M41 Domain 6 190 191 122.5 1.8e-35 1 CL0126
Cotton_A_40778_CDS 21 71 20 71 PF00249.31 Myb_DNA-binding Domain 2 46 46 32.2 8.7e-08 1 CL0123
Cotton_A_26472_CDS 233 296 221 298 PF10591.9 SPARC_Ca_bdg Domain 52 110 113 24.4 2.9e-05 1 CL0220
Cotton_A_29398_CDS 118 184 117 186 PF00403.26 HMA Domain 2 60 62 39.0 8.2e-10 1 No_clan
Cotton_A_13075_CDS 143 475 140 480 PF04864.13 Alliinase_C Domain 6 343 363 484.2 2.1e-145 1 CL0061
Cotton_A_20913_CDS 5 66 3 66 PF07765.12 KIP1 Family 4 74 74 50.3 1.9e-13 1 No_clan
Cotton_A_13123_CDS 28 52 28 52 PF06943.12 zf-LSD1 Domain 1 25 25 47.7 9.6e-13 1 No_clan
Cotton_A_12894_CDS 25 259 22 259 PF13561.6 adh_short_C2 Domain 3 234 234 194.6 1.8e-57 1 CL0063
Cotton_A_10593_CDS 117 236 117 236 PF13640.6 2OG-FeII_Oxy_3 Domain 1 96 96 79.1 3.4e-22 1 CL0029
Cotton_A_32604_CDS 1 79 1 79 PF00224.21 PK Family 244 322 348 114.2 6.1e-33 1 CL0151
Cotton_A_19056_CDS 70 159 69 166 PF01453.24 B_lectin Domain 2 93 105 56.3 3.8e-15 1 No_clan
Cotton_A_19056_CDS 492 753 490 755 PF00069.25 Pkinase Domain 4 259 264 164.1 3.8e-48 1 CL0016
Cotton_A_21355_CDS 31 201 31 201 PF01397.21 Terpene_synth Domain 1 192 192 200.4 2.1e-59 1 No_clan
Cotton_A_21355_CDS 243 459 238 459 PF03936.16 Terpene_synth_C Domain 51 267 267 223.9 2.3e-66 1 CL0613
Cotton_A_12613_CDS 50 436 49 437 PF01593.24 Amino_oxidase Domain 46 450 452 240.3 5.2e-71 1 CL0063
Cotton_A_07458_CDS 97 209 96 210 PF04178.12 Got1 Family 1 112 113 101.9 2.6e-29 1 No_clan
Cotton_A_00717_CDS 66 412 65 412 PF12819.7 Malectin_like Domain 2 336 336 143.1 1.1e-41 1 CL0202
Cotton_A_00717_CDS 523 783 520 789 PF07714.17 Pkinase_Tyr Domain 4 253 259 155.3 1.7e-45 1 CL0016
Cotton_A_23530_CDS 1 245 1 249 PF03140.15 DUF247 Family 36 285 397 158.0 3.9e-46 1 No_clan
Cotton_A_23530_CDS 249 324 245 324 PF03140.15 DUF247 Family 322 397 397 66.8 2.1e-18 1 No_clan
Cotton_A_39536_CDS 88 208 87 209 PF02657.15 SufE Family 2 121 122 92.8 1.3e-26 1 CL0233
Cotton_A_23184_CDS 127 215 122 217 PF03417.16 AAT Domain 7 92 226 46.8 2.9e-12 1 CL0052
Cotton_A_19389_CDS 15 173 15 174 PF03446.15 NAD_binding_2 Domain 1 158 158 156.5 6.2e-46 1 CL0063
Cotton_A_19389_CDS 176 298 176 300 PF14833.6 NAD_binding_11 Domain 1 120 122 85.1 4.3e-24 1 CL0106
Cotton_A_02712_CDS 128 280 127 281 PF17098.5 Wtap Family 2 155 156 148.6 1.3e-43 1 No_clan
Cotton_A_33043_CDS 8 132 6 141 PF05659.11 RPW8 Family 9 132 139 42.5 4.8e-11 1 No_clan
Cotton_A_33043_CDS 180 403 176 405 PF00931.22 NB-ARC Domain 6 250 252 102.7 1.8e-29 1 CL0023
Cotton_A_09428_CDS 224 276 223 276 PF13637.6 Ank_4 Repeat 2 55 55 37.9 1.9e-09 1 CL0465
Cotton_A_09428_CDS 331 379 328 380 PF13857.6 Ank_5 Repeat 9 55 56 29.6 6e-07 1 CL0465
Cotton_A_26323_CDS 98 161 97 161 PF00808.23 CBFD_NFYB_HMF Domain 2 65 65 76.2 1.8e-21 1 CL0012
Cotton_A_12910_CDS 1 257 1 258 PF01501.20 Glyco_transf_8 Family 4 255 256 155.9 1.4e-45 1 CL0110
Cotton_A_16573_CDS 95 304 90 368 PF00069.25 Pkinase Domain 6 209 264 153.4 7.2e-45 1 CL0016
Cotton_A_05396_CDS 17 75 15 75 PF00046.29 Homeodomain Domain 3 57 57 59.5 2.1e-16 1 CL0123
Cotton_A_05396_CDS 161 369 160 370 PF01852.19 START Domain 2 208 209 183.6 3.1e-54 1 CL0209
Cotton_A_05396_CDS 695 837 694 837 PF08670.11 MEKHLA Domain 2 143 143 179.8 2.6e-53 1 CL0183
Cotton_A_18577_CDS 3 57 1 62 PF01237.18 Oxysterol_BP Family 7 60 373 46.6 2.1e-12 1 No_clan
Cotton_A_18577_CDS 57 136 55 138 PF01237.18 Oxysterol_BP Family 144 225 373 37.3 1.4e-09 1 No_clan
Cotton_A_18577_CDS 131 239 129 241 PF01237.18 Oxysterol_BP Family 267 371 373 69.3 2.6e-19 1 No_clan
Cotton_A_09210_CDS 117 135 116 135 PF00612.27 IQ Motif 2 20 21 22.9 4.3e-05 1 CL0220
Cotton_A_09210_CDS 139 156 138 158 PF00612.27 IQ Motif 2 19 21 17.2 0.0031 1 CL0220
Cotton_A_09210_CDS 167 181 164 182 PF00612.27 IQ Motif 4 18 21 15.3 0.012 1 CL0220
Cotton_A_09210_CDS 582 660 559 663 PF13178.6 DUF4005 Family 10 89 93 66.2 3.2e-18 1 No_clan
Cotton_A_01467_CDS 4 49 4 50 PF00249.31 Myb_DNA-binding Domain 1 45 46 60.0 1.9e-16 1 CL0123
Cotton_A_01467_CDS 56 99 56 101 PF00249.31 Myb_DNA-binding Domain 1 44 46 60.9 9.6e-17 1 CL0123
Cotton_A_30290_CDS 1 122 1 122 PF00238.19 Ribosomal_L14 Domain 1 122 122 171.4 7.1e-51 1 No_clan
Cotton_A_30499_CDS 21 207 10 207 PF02115.17 Rho_GDI Domain 5 195 195 271.3 4.4e-81 1 CL0159
Cotton_A_31905_CDS 140 156 137 157 PF00612.27 IQ Motif 4 20 21 13.8 0.036 1 CL0220
Cotton_A_31905_CDS 163 177 160 179 PF00612.27 IQ Motif 5 19 21 14.8 0.017 1 CL0220
Cotton_A_36815_CDS 52 279 10 279 PF02309.16 AUX_IAA Family 1 237 237 278.3 6.3e-83 1 CL0072
Cotton_A_22728_CDS 81 105 80 106 PF13912.6 zf-C2H2_6 Domain 2 26 27 44.0 1.4e-11 1 CL0361
Cotton_A_22728_CDS 153 176 152 178 PF13912.6 zf-C2H2_6 Domain 2 25 27 46.2 3.1e-12 1 CL0361
Cotton_A_06398_CDS 13 45 8 45 PF00400.32 WD40 Repeat 6 38 38 18.1 0.0037 1 CL0186
Cotton_A_06398_CDS 139 175 139 176 PF00400.32 WD40 Repeat 1 37 38 17.3 0.0065 1 CL0186
Cotton_A_06398_CDS 179 214 178 214 PF00400.32 WD40 Repeat 2 37 38 21.0 0.00044 1 CL0186
Cotton_A_06398_CDS 220 255 218 255 PF00400.32 WD40 Repeat 3 38 38 15.0 0.035 1 CL0186
Cotton_A_06398_CDS 258 292 257 293 PF00400.32 WD40 Repeat 2 37 38 21.2 0.00038 1 CL0186
Cotton_A_06398_CDS 339 448 338 449 PF09070.11 PFU Domain 2 112 113 132.4 8.1e-39 1 No_clan
Cotton_A_06398_CDS 486 750 486 750 PF08324.11 PUL Domain 1 277 277 202.8 6.3e-60 1 No_clan
Cotton_A_01519_CDS 177 223 176 240 PF01842.25 ACT Domain 2 51 67 29.7 3.9e-07 1 CL0070
Cotton_A_01519_CDS 290 539 290 539 PF07714.17 Pkinase_Tyr Domain 1 259 259 246.3 3e-73 1 CL0016
Cotton_A_40063_CDS 269 414 104 420 PF00201.18 UDPGT Family 275 412 499 122.2 2.5e-35 1 CL0113
Cotton_A_00206_CDS 21 277 21 277 PF00069.25 Pkinase Domain 1 264 264 242.5 4.9e-72 1 CL0016
Cotton_A_27663_CDS 11 91 6 100 PF00293.28 NUDIX Domain 30 115 131 31.2 1.9e-07 1 CL0261
Cotton_A_29343_CDS 227 363 210 381 PF01852.19 START Domain 45 180 209 82.5 2.8e-23 1 CL0209
Cotton_A_29343_CDS 504 721 504 722 PF07059.12 DUF1336 Family 1 228 229 203.7 4.1e-60 1 No_clan
Cotton_A_01611_CDS 2 200 1 201 PF02545.14 Maf Domain 10 165 166 116.8 8.7e-34 1 CL0269
Cotton_A_29931_CDS 9 314 2 315 PF12819.7 Malectin_like Domain 73 335 336 127.9 4.6e-37 1 CL0202
Cotton_A_29931_CDS 413 675 408 678 PF07714.17 Pkinase_Tyr Domain 7 256 259 165.7 1.2e-48 1 CL0016
Cotton_A_38077_CDS 28 78 27 78 PF08263.12 LRRNT_2 Family 2 41 41 43.8 2.2e-11 1 No_clan
Cotton_A_38077_CDS 281 303 281 303 PF00560.33 LRR_1 Repeat 1 23 23 13.3 0.098 1 CL0022
Cotton_A_38077_CDS 620 642 620 642 PF00560.33 LRR_1 Repeat 1 23 23 9.6 1.6 1 CL0022
Cotton_A_38077_CDS 669 728 668 728 PF13855.6 LRR_8 Repeat 2 61 61 37.8 1.1e-09 1 CL0022
Cotton_A_38077_CDS 868 890 868 890 PF00560.33 LRR_1 Repeat 1 23 23 11.6 0.34 1 CL0022
Cotton_A_12746_CDS 161 223 145 223 PF02576.17 DUF150 Domain 18 73 73 28.8 1.2e-06 1 No_clan
Cotton_A_12104_CDS 2 190 1 190 PF01201.22 Ribosomal_S8e Family 9 137 137 173.4 2.5e-51 1 No_clan
Cotton_A_11123_CDS 52 99 48 100 PF13812.6 PPR_3 Repeat 14 61 63 17.3 0.0038 1 CL0020
Cotton_A_11123_CDS 153 200 152 201 PF13041.6 PPR_2 Repeat 2 48 50 39.0 6.9e-10 1 CL0020
Cotton_A_11123_CDS 228 255 228 255 PF01535.20 PPR Family 4 31 31 25.4 1.1e-05 1 CL0020
Cotton_A_11123_CDS 257 279 257 280 PF01535.20 PPR Family 2 24 31 16.3 0.0081 1 CL0020
Cotton_A_11123_CDS 285 333 284 333 PF13041.6 PPR_2 Repeat 2 50 50 39.3 5.6e-10 1 CL0020
Cotton_A_11123_CDS 360 385 360 386 PF01535.20 PPR Family 4 29 31 17.2 0.0043 1 CL0020
Cotton_A_11123_CDS 386 433 385 434 PF13041.6 PPR_2 Repeat 2 49 50 36.3 4.6e-09 1 CL0020
Cotton_A_11123_CDS 461 484 459 488 PF01535.20 PPR Family 3 26 31 13.2 0.079 1 CL0020
Cotton_A_11123_CDS 531 558 528 558 PF01535.20 PPR Family 4 31 31 10.9 0.44 1 CL0020
Cotton_A_18852_CDS 188 347 188 347 PF02731.15 SKIP_SNW Family 1 160 160 248.5 2.1e-74 1 No_clan
Cotton_A_30455_CDS 111 191 109 191 PF10163.9 EnY2 Family 3 84 84 106.4 7.4e-31 1 No_clan
Cotton_A_23908_CDS 9 298 8 299 PF06027.12 SLC35F Family 2 298 299 454.0 2.6e-136 1 CL0184
Cotton_A_30345_CDS 5 76 3 76 PF02798.20 GST_N Domain 3 76 76 47.6 1.6e-12 1 CL0172
Cotton_A_30345_CDS 140 178 135 193 PF00848.19 Ring_hydroxyl_A Domain 5 42 214 35.3 1.1e-08 1 CL0209
Cotton_A_20851_CDS 34 110 34 110 PF03134.19 TB2_DP1_HVA22 Family 1 77 77 97.0 4.4e-28 1 No_clan
Cotton_A_12015_CDS 69 228 68 229 PF01553.21 Acyltransferase Family 2 134 135 52.7 3.1e-14 1 CL0228
Cotton_A_12015_CDS 241 311 240 313 PF16076.5 Acyltransf_C Family 2 72 74 70.8 7.8e-20 1 No_clan
Cotton_A_05169_CDS 36 108 35 109 PF04181.13 RPAP2_Rtr1 Family 2 74 75 74.9 4.6e-21 1 No_clan
Cotton_A_12431_CDS 105 529 97 539 PF00012.20 HSP70 Family 61 483 599 260.4 2.5e-77 1 CL0108
Cotton_A_04789_CDS 180 223 179 223 PF13639.6 zf-RING_2 Domain 2 44 44 45.0 1e-11 1 CL0229
Cotton_A_38609_CDS 66 211 58 211 PF00177.21 Ribosomal_S7 Domain 13 149 149 127.8 2.5e-37 1 No_clan
Cotton_A_13576_CDS 44 371 44 371 PF03372.23 Exo_endo_phos Domain 1 233 233 60.6 1.5e-16 1 CL0530
Cotton_A_09548_CDS 18 288 18 288 PF01370.21 Epimerase Family 1 241 241 202.8 5.6e-60 1 CL0063
Cotton_A_24257_CDS 23 177 23 177 PF04043.15 PMEI Domain 1 154 154 113.5 1.1e-32 1 No_clan
Cotton_A_37201_CDS 39 55 38 55 PF00098.23 zf-CCHC Domain 2 18 18 27.7 1.9e-06 1 CL0511
Cotton_A_24015_CDS 7 185 7 186 PF01294.18 Ribosomal_L13e Family 1 179 180 258.0 4.3e-77 1 No_clan
Cotton_A_05428_CDS 223 259 221 259 PF00400.32 WD40 Repeat 3 38 38 13.5 0.1 1 CL0186
Cotton_A_30358_CDS 65 264 64 266 PF01633.20 Choline_kinase Family 3 211 213 224.6 9.9e-67 1 CL0016
Cotton_A_14793_CDS 10 269 9 269 PF03619.16 Solute_trans_a Family 2 265 265 297.7 7.9e-89 1 No_clan
Cotton_A_30248_CDS 106 365 106 366 PF02485.21 Branch Family 1 246 247 250.8 1.4e-74 1 CL0110
Cotton_A_29896_CDS 4 228 1 236 PF00139.19 Lectin_legB Domain 16 238 249 226.8 2.9e-67 1 CL0004
Cotton_A_29896_CDS 304 570 303 573 PF00069.25 Pkinase Domain 2 260 264 172.1 1.4e-50 1 CL0016
Cotton_A_26069_CDS 7 252 7 253 PF06813.13 Nodulin-like Family 1 249 250 226.7 3.1e-67 1 CL0015
Cotton_A_17584_CDS 5 85 4 89 PF00168.30 C2 Domain 2 65 103 25.2 1.5e-05 1 CL0154
Cotton_A_07379_CDS 71 183 71 183 PF16656.5 Pur_ac_phosph_N Domain 1 94 94 69.3 3.3e-19 1 CL0159
Cotton_A_07379_CDS 198 402 166 404 PF00149.28 Metallophos Domain 12 202 204 63.5 3.7e-17 1 CL0163
Cotton_A_07379_CDS 419 515 419 516 PF14008.6 Metallophos_C Domain 1 60 63 49.0 8.6e-13 1 No_clan
Cotton_A_40975_CDS 33 74 32 75 PF08263.12 LRRNT_2 Family 2 40 41 34.4 2e-08 1 No_clan
Cotton_A_40975_CDS 126 186 125 186 PF13855.6 LRR_8 Repeat 2 61 61 41.8 6.5e-11 1 CL0022
Cotton_A_40975_CDS 356 622 353 624 PF00069.25 Pkinase Domain 4 260 264 94.7 6e-27 1 CL0016
Cotton_A_04273_CDS 35 272 35 272 PF00230.20 MIP Family 1 227 227 284.5 6.3e-85 1 No_clan
Cotton_A_27949_CDS 77 119 76 119 PF13639.6 zf-RING_2 Domain 2 44 44 46.1 4.5e-12 1 CL0229
Cotton_A_39633_CDS 15 83 2 109 PF00083.24 Sugar_tr Family 215 284 452 26.3 3.2e-06 1 CL0015
Cotton_A_07591_CDS 67 234 61 235 PF01251.18 Ribosomal_S7e Family 14 183 184 248.9 2.7e-74 1 CL0652
Cotton_A_04212_CDS 11 84 11 84 PF07765.12 KIP1 Family 1 74 74 123.2 3.4e-36 1 No_clan
Cotton_A_12643_CDS 10 150 7 151 PF00892.20 EamA Family 4 136 137 49.2 5.8e-13 1 CL0184
Cotton_A_12643_CDS 181 319 180 320 PF00892.20 EamA Family 2 136 137 41.4 1.5e-10 1 CL0184
Cotton_A_36029_CDS 289 334 265 336 PF06241.12 Castor_Poll_mid Family 55 102 104 47.0 2e-12 1 CL0582
Cotton_A_17149_CDS 10 99 9 116 PF18052.1 Rx_N Domain 2 91 93 80.7 7.1e-23 1 No_clan
Cotton_A_17149_CDS 172 422 172 424 PF00931.22 NB-ARC Domain 1 250 252 161.2 2.6e-47 1 CL0023
Cotton_A_30100_CDS 258 305 256 306 PF00249.31 Myb_DNA-binding Domain 3 45 46 28.4 1.4e-06 1 CL0123
Cotton_A_20479_CDS 4 40 1 42 PF18511.1 F-box_5 Domain 4 40 42 35.2 6.5e-09 1 CL0271
Cotton_A_20479_CDS 149 171 148 172 PF13516.6 LRR_6 Repeat 2 23 24 14.4 0.028 1 CL0022
Cotton_A_20479_CDS 203 224 202 224 PF13516.6 LRR_6 Repeat 3 23 24 12.7 0.1 1 CL0022
Cotton_A_20479_CDS 279 301 278 302 PF13516.6 LRR_6 Repeat 2 23 24 9.3 1.2 1 CL0022
Cotton_A_27409_CDS 1 46 1 55 PF05695.12 DUF825 Family 617 662 1486 64.5 3e-18 1 No_clan
Cotton_A_28621_CDS 318 389 317 389 PF02201.18 SWIB Domain 2 74 74 77.3 6.2e-22 1 No_clan
Cotton_A_26630_CDS 14 54 13 60 PF00076.22 RRM_1 Domain 2 45 70 26.6 3.9e-06 1 CL0221
Cotton_A_23471_CDS 221 276 220 278 PF03909.17 BSD Domain 2 56 58 45.6 5.1e-12 1 No_clan
Cotton_A_28324_CDS 42 244 28 245 PF08442.10 ATP-grasp_2 Domain 7 201 202 189.2 6.2e-56 1 CL0179
Cotton_A_28324_CDS 304 430 304 430 PF00549.19 Ligase_CoA Domain 1 153 153 59.9 2.5e-16 1 CL0506
Cotton_A_38307_CDS 23 127 20 131 PF01398.21 JAB Family 4 117 118 51.1 1.2e-13 1 CL0366
Cotton_A_11409_CDS 35 77 35 78 PF06203.14 CCT Motif 1 43 44 65.4 3.3e-18 1 CL0281
Cotton_A_01505_CDS 12 139 11 139 PF02365.15 NAM Family 2 126 126 116.1 1.8e-33 1 No_clan
Cotton_A_29003_CDS 67 123 67 124 PF00847.20 AP2 Domain 1 53 54 33.8 2.9e-08 1 CL0081
Cotton_A_29003_CDS 166 217 166 218 PF00847.20 AP2 Domain 1 53 54 45.6 6.1e-12 1 CL0081
Cotton_A_16176_CDS 46 127 38 129 PF01657.17 Stress-antifung Family 10 93 95 42.8 6.2e-11 1 No_clan
Cotton_A_16176_CDS 157 241 144 242 PF01657.17 Stress-antifung Family 7 94 95 46.4 4.5e-12 1 No_clan
Cotton_A_16176_CDS 324 591 323 591 PF07714.17 Pkinase_Tyr Domain 2 259 259 152.5 1.3e-44 1 CL0016
Cotton_A_36940_CDS 2 165 1 168 PF00067.22 p450 Domain 297 460 463 159.4 1.2e-46 1 No_clan
Cotton_A_04537_CDS 172 285 65 286 PF00383.23 dCMP_cyt_deam_1 Family 42 100 101 24.3 2.2e-05 1 CL0109
Cotton_A_27799_CDS 58 149 56 182 PF08240.12 ADH_N Domain 3 82 109 78.4 3.4e-22 1 CL0296
Cotton_A_27799_CDS 224 345 224 356 PF00107.26 ADH_zinc_N Family 1 118 130 74.5 7.3e-21 1 CL0063
Cotton_A_29838_CDS 54 192 35 195 PF08534.10 Redoxin Domain 13 144 147 78.9 3.1e-22 1 CL0172
Cotton_A_07109_CDS 38 177 38 177 PF00056.23 Ldh_1_N Family 1 141 141 150.3 3.6e-44 1 CL0063
Cotton_A_07109_CDS 180 343 180 348 PF02866.18 Ldh_1_C Domain 1 158 167 90.7 9.5e-26 1 CL0341
Cotton_A_10815_CDS 10 177 10 178 PF00071.22 Ras Domain 1 161 162 190.4 1.6e-56 1 CL0023
Cotton_A_24335_CDS 2 77 1 77 PF03101.15 FAR1 Domain 15 90 90 91.2 4.9e-26 1 CL0274
Cotton_A_28272_CDS 38 265 38 268 PF01255.19 Prenyltransf Family 1 221 224 227.0 2e-67 1 No_clan
Cotton_A_19744_CDS 20 89 20 90 PF00076.22 RRM_1 Domain 1 69 70 65.1 3.8e-18 1 CL0221
Cotton_A_19744_CDS 264 333 264 334 PF00076.22 RRM_1 Domain 1 69 70 62.4 2.5e-17 1 CL0221
Cotton_A_19744_CDS 489 550 489 564 PF00076.22 RRM_1 Domain 1 61 70 49.1 3.6e-13 1 CL0221
Cotton_A_10877_CDS 188 230 187 230 PF13639.6 zf-RING_2 Domain 2 44 44 42.9 4.6e-11 1 CL0229
Cotton_A_14985_CDS 29 301 28 301 PF05910.12 DUF868 Family 2 279 279 352.6 1.8e-105 1 No_clan
Cotton_A_22074_CDS 16 268 16 268 PF00069.25 Pkinase Domain 1 264 264 268.7 4.8e-80 1 CL0016
Cotton_A_22074_CDS 290 326 290 326 PF00627.31 UBA Domain 1 37 37 30.9 1.8e-07 1 CL0214
Cotton_A_22074_CDS 462 503 461 504 PF02149.19 KA1 Domain 2 44 45 49.9 2e-13 1 CL0573
Cotton_A_25450_CDS 8 131 8 131 PF02365.15 NAM Family 1 126 126 133.7 6.7e-39 1 No_clan
Cotton_A_24967_CDS 50 185 48 206 PF07281.12 INSIG Family 4 148 212 29.4 5.8e-07 1 No_clan
Cotton_A_13818_CDS 31 145 30 146 PF07732.15 Cu-oxidase_3 Domain 2 118 119 148.4 8.6e-44 1 CL0026
Cotton_A_13818_CDS 157 307 156 308 PF00394.22 Cu-oxidase Domain 2 158 159 134.4 3.8e-39 1 CL0026
Cotton_A_13818_CDS 418 550 417 552 PF07731.14 Cu-oxidase_2 Domain 2 135 137 139.9 4.2e-41 1 CL0026
Cotton_A_28828_CDS 170 296 170 296 PF00134.23 Cyclin_N Domain 1 127 127 153.4 2.4e-45 1 CL0065
Cotton_A_28828_CDS 298 413 298 415 PF02984.19 Cyclin_C Domain 1 117 119 122.1 1.2e-35 1 CL0065
Cotton_A_02067_CDS 33 150 33 150 PF00188.26 CAP Domain 1 126 126 79.7 3.3e-22 1 CL0659
Cotton_A_14230_CDS 276 335 275 335 PF13855.6 LRR_8 Repeat 2 61 61 31.9 8.2e-08 1 CL0022
Cotton_A_14230_CDS 401 585 400 585 PF11721.8 Malectin Domain 2 165 165 151.5 2.1e-44 1 CL0202
Cotton_A_14230_CDS 666 868 665 935 PF00069.25 Pkinase Domain 2 198 264 157.5 4.1e-46 1 CL0016
Cotton_A_06656_CDS 13 98 8 123 PF18052.1 Rx_N Domain 2 84 93 80.3 9.6e-23 1 No_clan
Cotton_A_06656_CDS 190 404 188 426 PF00931.22 NB-ARC Domain 3 222 252 148.7 1.7e-43 1 CL0023
Cotton_A_09782_CDS 122 395 121 395 PF05637.12 Glyco_transf_34 Family 2 239 239 250.9 1.3e-74 1 CL0110
Cotton_A_27284_CDS 87 503 77 515 PF00067.22 p450 Domain 22 446 463 283.6 2.7e-84 1 No_clan
Cotton_A_04242_CDS 20 67 18 73 PF02359.18 CDC48_N Domain 3 50 85 27.8 2.1e-06 1 CL0332
Cotton_A_30983_CDS 2 54 1 55 PF01775.17 Ribosomal_L18A Domain 68 120 121 69.8 2.2e-19 1 No_clan
Cotton_A_00822_CDS 24 63 23 63 PF08263.12 LRRNT_2 Family 2 41 41 44.8 1.1e-11 1 No_clan
Cotton_A_00822_CDS 91 113 91 113 PF00560.33 LRR_1 Repeat 1 23 23 10.4 0.86 1 CL0022
Cotton_A_08482_CDS 35 236 34 236 PF04720.12 PDDEXK_6 Family 2 221 221 189.9 5.8e-56 1 No_clan
Cotton_A_30328_CDS 159 205 159 205 PF03107.16 C1_2 Domain 1 47 47 38.4 1.1e-09 1 CL0006
Cotton_A_30328_CDS 317 361 312 361 PF03107.16 C1_2 Domain 4 47 47 26.7 5e-06 1 CL0006
Cotton_A_16911_CDS 13 290 2 293 PF08423.11 Rad51 Domain 18 252 255 154.9 2.3e-45 1 CL0023
Cotton_A_27687_CDS 21 96 20 96 PF03134.19 TB2_DP1_HVA22 Family 2 77 77 93.7 4.7e-27 1 No_clan
Cotton_A_18717_CDS 198 269 198 269 PF07983.13 X8 Domain 1 76 76 80.3 1.2e-22 1 No_clan
Cotton_A_07324_CDS 10 88 9 88 PF17927.1 Ins134_P3_kin_N Domain 2 80 80 94.9 2.9e-27 1 CL0483
Cotton_A_07324_CDS 108 308 107 309 PF05770.11 Ins134_P3_kin Domain 2 200 201 281.4 3.3e-84 1 CL0179
Cotton_A_30773_CDS 149 226 149 227 PF11282.8 DUF3082 Family 1 79 80 108.3 1.6e-31 1 No_clan
Cotton_A_15285_CDS 165 298 165 302 PF04548.16 AIG1 Domain 1 132 212 104.4 5.2e-30 1 CL0023
Cotton_A_15285_CDS 523 684 522 686 PF11886.8 TOC159_MAD Family 2 163 267 249.4 2.8e-74 1 No_clan
Cotton_A_19075_CDS 13 195 12 233 PF03321.13 GH3 Family 2 183 527 147.4 6.4e-43 1 CL0378
Cotton_A_27066_CDS 216 562 213 574 PF07995.11 GSDH Domain 7 274 332 84.2 1e-23 1 CL0186
Cotton_A_09402_CDS 29 293 27 295 PF00069.25 Pkinase Domain 3 261 264 76.8 1.7e-21 1 CL0016
Cotton_A_09402_CDS 547 575 547 577 PF02985.22 HEAT Repeat 1 29 31 21.4 0.0002 1 CL0020
Cotton_A_09402_CDS 1126 1162 1124 1162 PF00400.32 WD40 Repeat 3 38 38 28.1 2.4e-06 1 CL0186
Cotton_A_28600_CDS 31 158 26 160 PF14223.6 Retrotran_gag_2 Family 7 129 138 94.9 3.1e-27 1 CL0523
Cotton_A_05669_CDS 103 400 103 401 PF02383.18 Syja_N Family 1 319 320 265.0 9.4e-79 1 CL0031
Cotton_A_21525_CDS 76 178 76 180 PF13456.6 RVT_3 Domain 1 104 124 30.5 2.6e-07 1 CL0219
Cotton_A_04509_CDS 21 147 21 147 PF02365.15 NAM Family 1 126 126 128.2 3.2e-37 1 No_clan
Cotton_A_08957_CDS 26 484 26 485 PF00759.19 Glyco_hydro_9 Domain 1 410 411 469.2 1.6e-140 1 CL0059
Cotton_A_08957_CDS 530 607 528 609 PF09478.10 CBM49 Domain 3 80 81 79.0 2.4e-22 1 CL0203
Cotton_A_32591_CDS 63 601 63 602 PF02990.16 EMP70 Family 1 518 519 730.3 1.2e-219 1 No_clan
Cotton_A_39776_CDS 13 354 11 356 PF00224.21 PK Family 3 346 348 510.5 1.8e-153 1 CL0151
Cotton_A_39776_CDS 371 496 371 498 PF02887.16 PK_C Domain 1 115 117 74.8 6.2e-21 1 No_clan
Cotton_A_35701_CDS 85 302 85 303 PF02536.14 mTERF Family 1 224 314 86.9 1.2e-24 1 No_clan
Cotton_A_35701_CDS 251 360 250 360 PF02536.14 mTERF Family 208 314 314 61.9 4.7e-17 1 No_clan
Cotton_A_15755_CDS 49 288 45 289 PF00141.23 peroxidase Domain 5 228 229 253.5 1.9e-75 1 CL0617
Cotton_A_36952_CDS 19 79 1 82 PF00026.23 Asp Family 230 286 315 41.7 9.3e-11 1 CL0129
Cotton_A_12497_CDS 19 352 17 353 PF03214.13 RGP Family 3 341 342 590.8 8.1e-178 1 CL0110
Cotton_A_02555_CDS 137 532 136 535 PF00022.19 Actin Family 2 369 407 424.8 2.6e-127 1 CL0108
Cotton_A_15690_CDS 83 362 76 431 PF00266.19 Aminotran_5 Domain 44 315 371 69.4 2.7e-19 1 CL0061
Cotton_A_40076_CDS 6 168 5 168 PF13967.6 RSN1_TM Family 2 156 156 140.8 3e-41 1 No_clan
Cotton_A_40076_CDS 189 342 189 343 PF14703.6 PHM7_cyt Domain 1 175 176 114.8 5e-33 1 CL0221
Cotton_A_40076_CDS 355 620 354 620 PF02714.15 RSN1_7TM Family 2 274 274 252.8 3.6e-75 1 CL0416
Cotton_A_36861_CDS 3 59 1 59 PF03087.14 DUF241 Family 179 234 234 43.4 3.4e-11 1 CL0133
Cotton_A_05627_CDS 206 363 205 363 PF13359.6 DDE_Tnp_4 Domain 2 158 158 126.6 6.8e-37 1 CL0219
Cotton_A_27363_CDS 8 197 7 197 PF06552.12 TOM20_plant Family 2 187 187 307.3 3.5e-92 1 CL0020
Cotton_A_22574_CDS 27 145 27 145 PF00411.19 Ribosomal_S11 Family 1 110 110 161.1 1e-47 1 CL0267
Cotton_A_02488_CDS 66 459 66 460 PF01490.18 Aa_trans Family 1 408 409 273.1 3.2e-81 1 CL0062
Cotton_A_36352_CDS 35 195 35 195 PF01554.18 MatE Family 1 161 161 89.2 2.2e-25 1 CL0222
Cotton_A_36352_CDS 258 417 256 418 PF01554.18 MatE Family 4 160 161 93.9 7.8e-27 1 CL0222
Cotton_A_16565_CDS 148 283 110 283 PF14675.6 FANCI_S1 Family 62 223 223 60.0 2.4e-16 1 No_clan
Cotton_A_16565_CDS 287 367 287 369 PF14679.6 FANCI_HD1 Family 1 84 86 78.3 3.2e-22 1 No_clan
Cotton_A_16565_CDS 382 539 381 540 PF14676.6 FANCI_S2 Family 2 163 164 136.0 1.4e-39 1 No_clan
Cotton_A_16565_CDS 558 793 558 795 PF14680.6 FANCI_HD2 Family 1 234 237 187.1 2.9e-55 1 No_clan
Cotton_A_16565_CDS 1095 1328 1094 1332 PF14678.6 FANCI_S4 Family 2 246 251 211.2 1.3e-62 1 No_clan
Cotton_A_10354_CDS 107 207 106 211 PF04367.13 DUF502 Family 2 102 106 101.6 2e-29 1 No_clan
Cotton_A_14743_CDS 69 117 68 117 PF13041.6 PPR_2 Repeat 2 50 50 46.5 3.1e-12 1 CL0020
Cotton_A_14743_CDS 138 187 138 187 PF13041.6 PPR_2 Repeat 1 50 50 56.8 1.8e-15 1 CL0020
Cotton_A_14743_CDS 208 257 208 257 PF13041.6 PPR_2 Repeat 1 50 50 58.1 7.2e-16 1 CL0020
Cotton_A_14743_CDS 278 327 278 327 PF13041.6 PPR_2 Repeat 1 50 50 64.0 1.1e-17 1 CL0020
Cotton_A_14743_CDS 345 377 344 377 PF12854.7 PPR_1 Repeat 2 34 34 40.7 1.4e-10 1 CL0020
Cotton_A_14743_CDS 383 432 383 432 PF13041.6 PPR_2 Repeat 1 50 50 60.9 9.4e-17 1 CL0020
Cotton_A_14743_CDS 453 500 453 500 PF13041.6 PPR_2 Repeat 1 48 50 56.6 2.2e-15 1 CL0020
Cotton_A_17451_CDS 82 493 67 509 PF00067.22 p450 Domain 23 445 463 281.8 9.3e-84 1 No_clan
Cotton_A_32217_CDS 28 419 27 425 PF01490.18 Aa_trans Family 2 403 409 243.2 4.1e-72 1 CL0062
Cotton_A_18526_CDS 1 52 1 53 PF00305.19 Lipoxygenase Domain 388 440 674 66.4 1.7e-18 1 No_clan
Cotton_A_18526_CDS 53 247 51 247 PF00305.19 Lipoxygenase Domain 479 674 674 285.5 8.6e-85 1 No_clan
Cotton_A_01448_CDS 78 230 78 230 PF00005.27 ABC_tran Domain 1 137 137 96.1 2.5e-27 1 CL0023
Cotton_A_01448_CDS 525 712 523 717 PF01061.24 ABC2_membrane Family 3 191 210 85.4 3.5e-24 1 CL0181
Cotton_A_01448_CDS 941 972 939 972 PF06200.14 tify Domain 3 34 34 65.4 2e-18 1 No_clan
Cotton_A_01448_CDS 1057 1081 1057 1082 PF09425.10 CCT_2 Motif 1 25 26 47.4 1.3e-12 1 CL0281
Cotton_A_06895_CDS 326 470 322 481 PF00067.22 p450 Domain 299 433 463 51.4 7e-14 1 No_clan
Cotton_A_23202_CDS 38 93 8 95 PF05922.16 Inhibitor_I9 Domain 19 78 82 24.8 2.6e-05 1 CL0570
Cotton_A_01434_CDS 6 66 4 68 PF13499.6 EF-hand_7 Domain 3 69 71 57.4 1.5e-15 1 CL0220
Cotton_A_01434_CDS 79 140 77 141 PF13499.6 EF-hand_7 Domain 3 70 71 47.4 2e-12 1 CL0220
Cotton_A_37855_CDS 5 75 1 78 PF02519.14 Auxin_inducible Family 9 74 90 42.6 5.2e-11 1 No_clan
Cotton_A_02125_CDS 66 130 65 130 PF00808.23 CBFD_NFYB_HMF Domain 2 65 65 88.4 2.8e-25 1 CL0012
Cotton_A_28297_CDS 65 154 45 165 PF01215.19 COX5B Domain 36 124 129 61.6 5.6e-17 1 CL0045
Cotton_A_22689_CDS 57 269 56 305 PF03634.13 TCP Family 2 90 156 107.6 8.6e-31 1 No_clan
Cotton_A_35871_CDS 1 59 1 59 PF04783.12 DUF630 Family 1 59 59 79.4 1.6e-22 1 No_clan
Cotton_A_35871_CDS 293 598 293 599 PF04782.12 DUF632 Family 1 309 310 336.1 2e-100 1 No_clan
Cotton_A_25310_CDS 288 386 285 386 PF00168.30 C2 Domain 4 103 103 69.4 2.7e-19 1 CL0154
Cotton_A_38769_CDS 54 475 53 475 PF00450.22 Peptidase_S10 Domain 2 419 419 445.7 2.2e-133 1 CL0028
Cotton_A_34510_CDS 115 412 113 412 PF00069.25 Pkinase Domain 3 264 264 220.2 3e-65 1 CL0016
Cotton_A_34510_CDS 431 475 431 475 PF00433.24 Pkinase_C Family 1 46 46 26.7 6.5e-06 1 No_clan
Cotton_A_05811_CDS 65 123 55 137 PF00472.20 RF-1 Family 11 70 116 67.3 1e-18 1 CL0337
Cotton_A_38005_CDS 41 90 40 91 PF00847.20 AP2 Domain 2 53 54 51.7 7.6e-14 1 CL0081
Cotton_A_34812_CDS 24 59 24 72 PF00786.28 PBD Domain 1 41 59 32.1 1.1e-07 1 No_clan
Cotton_A_04021_CDS 8 90 8 97 PF01370.21 Epimerase Family 1 77 241 38.1 1.1e-09 1 CL0063
Cotton_A_17003_CDS 43 361 43 361 PF00657.22 Lipase_GDSL Family 2 200 200 48.5 1e-12 1 CL0264
Cotton_A_23697_CDS 30 228 30 228 PF13460.6 NAD_binding_10 Domain 1 184 184 161.2 2.5e-47 1 CL0063
Cotton_A_00099_CDS 50 453 50 454 PF00856.28 SET Family 1 168 169 42.1 1.2e-10 1 No_clan
Cotton_A_00099_CDS 182 209 174 209 PF01753.18 zf-MYND Domain 13 38 38 26.3 5.6e-06 1 CL0175
Cotton_A_04796_CDS 1 84 1 88 PF00694.19 Aconitase_C Domain 28 112 131 83.2 1.9e-23 1 CL0364
Cotton_A_30374_CDS 10 97 5 122 PF18052.1 Rx_N Domain 6 84 93 67.2 1.2e-18 1 No_clan
Cotton_A_30374_CDS 173 217 172 222 PF00931.22 NB-ARC Domain 2 46 252 26.9 2.5e-06 1 CL0023
Cotton_A_02928_CDS 8 263 8 263 PF00069.25 Pkinase Domain 1 264 264 248.8 5.9e-74 1 CL0016
Cotton_A_02928_CDS 307 367 307 367 PF03822.14 NAF Domain 1 54 54 80.8 6e-23 1 CL0573
Cotton_A_14686_CDS 36 76 36 88 PF05608.12 DUF778 Family 1 41 189 57.4 2.4e-15 1 No_clan
Cotton_A_13713_CDS 121 160 121 160 PF00400.32 WD40 Repeat 1 38 38 14.7 0.042 1 CL0186
Cotton_A_13713_CDS 204 232 196 233 PF00400.32 WD40 Repeat 10 37 38 16.6 0.01 1 CL0186
Cotton_A_13713_CDS 238 274 237 274 PF00400.32 WD40 Repeat 2 38 38 20.5 0.00065 1 CL0186
Cotton_A_13713_CDS 293 321 283 322 PF00400.32 WD40 Repeat 10 37 38 13.3 0.12 1 CL0186
Cotton_A_13713_CDS 331 362 327 363 PF00400.32 WD40 Repeat 5 37 38 16.0 0.016 1 CL0186
Cotton_A_13713_CDS 370 414 369 414 PF00400.32 WD40 Repeat 2 38 38 24.8 2.9e-05 1 CL0186
Cotton_A_39382_CDS 39 171 38 172 PF03018.14 Dirigent Family 2 147 148 103.4 9e-30 1 CL0650
Cotton_A_22469_CDS 158 385 152 386 PF00931.22 NB-ARC Domain 7 251 252 159.8 6.7e-47 1 CL0023
Cotton_A_23018_CDS 13 208 12 208 PF00227.26 Proteasome Domain 2 190 190 117.9 3.7e-34 1 CL0052
Cotton_A_12639_CDS 64 210 63 211 PF00190.22 Cupin_1 Domain 2 150 151 171.9 6.3e-51 1 CL0029
Cotton_A_33711_CDS 30 264 29 264 PF00230.20 MIP Family 2 227 227 283.2 1.6e-84 1 No_clan
Cotton_A_23487_CDS 18 61 16 63 PF00646.33 F-box Domain 3 46 48 48.0 7.5e-13 1 CL0271
Cotton_A_22605_CDS 36 87 35 88 PF14416.6 PMR5N Domain 2 52 53 73.7 1e-20 1 No_clan
Cotton_A_22605_CDS 89 354 89 355 PF13839.6 PC-Esterase Family 1 282 283 277.8 1.3e-82 1 CL0264
Cotton_A_39313_CDS 95 163 95 163 PF00076.22 RRM_1 Domain 1 70 70 59.5 2e-16 1 CL0221
Cotton_A_12581_CDS 25 127 24 128 PF00085.20 Thioredoxin Domain 2 102 103 115.4 1e-33 1 CL0172
Cotton_A_12581_CDS 144 247 143 248 PF00085.20 Thioredoxin Domain 2 102 103 108.9 1.1e-31 1 CL0172
Cotton_A_12581_CDS 265 358 265 358 PF07749.12 ERp29 Domain 1 96 96 81.4 6.7e-23 1 No_clan
Cotton_A_25801_CDS 37 172 32 173 PF01814.23 Hemerythrin Domain 6 131 131 32.6 1e-07 1 No_clan
Cotton_A_25801_CDS 875 950 875 951 PF05495.12 zf-CHY Domain 1 74 75 64.7 7.9e-18 1 No_clan
Cotton_A_25801_CDS 1002 1045 1002 1046 PF13639.6 zf-RING_2 Domain 1 43 44 34.1 2.6e-08 1 CL0229
Cotton_A_25801_CDS 1050 1108 1050 1108 PF14599.6 zinc_ribbon_6 Domain 1 59 59 80.4 6.9e-23 1 No_clan
Cotton_A_09939_CDS 127 506 126 506 PF00155.21 Aminotran_1_2 Domain 2 363 363 277.2 2.1e-82 1 CL0061
Cotton_A_23096_CDS 27 264 9 264 PF14617.6 CMS1 Family 16 252 252 93.6 1.2e-26 1 CL0023
Cotton_A_02895_CDS 100 406 99 408 PF13249.6 SQHop_cyclase_N Domain 2 289 291 125.1 2.8e-36 1 CL0059
Cotton_A_02895_CDS 418 757 417 757 PF13243.6 SQHop_cyclase_C Domain 2 319 319 177.0 4.9e-52 1 CL0059
Cotton_A_26355_CDS 157 189 156 190 PF05553.11 DUF761 Family 2 34 36 44.8 6.5e-12 1 No_clan
Cotton_A_02237_CDS 16 234 13 234 PF00230.20 MIP Family 4 227 227 247.2 1.6e-73 1 No_clan
Cotton_A_19352_CDS 170 297 169 299 PF00004.29 AAA Domain 2 130 132 65.7 5.5e-18 1 CL0023
Cotton_A_19352_CDS 414 562 405 579 PF05278.12 PEARLI-4 Family 88 240 269 92.5 3.2e-26 1 No_clan
Cotton_A_31637_CDS 4 107 4 107 PF00044.24 Gp_dh_N Domain 1 101 101 116.4 6.2e-34 1 CL0063
Cotton_A_31637_CDS 159 316 159 316 PF02800.20 Gp_dh_C Domain 1 158 158 235.9 1.5e-70 1 CL0139
Cotton_A_00118_CDS 45 371 44 371 PF00749.21 tRNA-synt_1c Domain 2 314 314 332.9 1.5e-99 1 CL0039
Cotton_A_24213_CDS 1 74 1 77 PF00421.19 PSII Family 428 504 507 82.8 2.1e-23 1 No_clan
Cotton_A_39774_CDS 7 92 6 93 PF03083.16 MtN3_slv Family 2 86 87 94.8 2.4e-27 1 CL0141
Cotton_A_39774_CDS 129 212 128 214 PF03083.16 MtN3_slv Family 2 85 87 93.2 7.5e-27 1 CL0141
Cotton_A_10763_CDS 671 712 669 712 PF13639.6 zf-RING_2 Domain 3 44 44 42.0 8.9e-11 1 CL0229
Cotton_A_28823_CDS 37 103 37 103 PF03810.19 IBN_N Family 1 74 74 51.5 6.9e-14 1 CL0020
Cotton_A_28823_CDS 115 258 114 258 PF08389.12 Xpo1 Family 2 149 149 135.2 1.8e-39 1 CL0020
Cotton_A_28823_CDS 337 372 336 372 PF18777.1 CRM1_repeat Repeat 2 37 37 62.7 1.6e-17 1 No_clan
Cotton_A_28823_CDS 409 476 409 476 PF18784.1 CRM1_repeat_2 Repeat 1 68 68 105.0 1.2e-30 1 No_clan
Cotton_A_28823_CDS 490 539 489 539 PF18787.1 CRM1_repeat_3 Repeat 2 51 51 94.2 3.6e-27 1 No_clan
Cotton_A_28823_CDS 713 1034 713 1035 PF08767.11 CRM1_C Family 1 320 321 425.6 1.1e-127 1 CL0020
Cotton_A_18019_CDS 48 179 48 189 PF07250.11 Glyoxal_oxid_N Family 1 132 240 205.4 7.4e-61 1 No_clan
Cotton_A_17184_CDS 8 58 8 78 PF00223.19 PsaA_PsaB Family 1 51 718 60.3 1.1e-16 1 No_clan
Cotton_A_01887_CDS 44 101 44 101 PF08068.12 DKCLD Domain 1 58 58 106.5 5.2e-31 1 CL0649
Cotton_A_01887_CDS 105 221 105 221 PF01509.18 TruB_N Family 1 149 149 70.6 1.8e-19 1 CL0649
Cotton_A_01887_CDS 222 288 222 289 PF16198.5 TruB_C_2 Family 1 63 64 77.9 4.6e-22 1 CL0649
Cotton_A_01887_CDS 292 364 292 365 PF01472.20 PUA Family 1 73 74 75.9 1.7e-21 1 CL0178
Cotton_A_30588_CDS 27 69 27 93 PF05703.11 Auxin_canalis Family 1 43 256 44.8 1.5e-11 1 No_clan
Cotton_A_30588_CDS 86 239 60 241 PF05703.11 Auxin_canalis Family 103 254 256 163.9 6.3e-48 1 No_clan
Cotton_A_30588_CDS 261 366 261 367 PF08458.10 PH_2 Family 1 104 105 142.4 5.4e-42 1 CL0266
Cotton_A_36281_CDS 18 107 16 107 PF04576.15 Zein-binding Family 3 92 92 108.8 1.2e-31 1 No_clan
Cotton_A_12648_CDS 4 60 4 65 PF00076.22 RRM_1 Domain 1 64 70 56.4 1.9e-15 1 CL0221
Cotton_A_12648_CDS 95 157 95 158 PF00076.22 RRM_1 Domain 1 69 70 48.6 5.1e-13 1 CL0221
Cotton_A_07246_CDS 2 99 1 123 PF04641.12 Rtf2 Family 121 218 262 90.5 1.1e-25 1 CL0229
Cotton_A_37355_CDS 91 142 28 142 PF14510.6 ABC_trans_N Domain 31 81 81 40.6 2.8e-10 1 No_clan
Cotton_A_37355_CDS 167 349 167 351 PF00005.27 ABC_tran Domain 1 135 137 45.3 1.2e-11 1 CL0023
Cotton_A_37355_CDS 503 653 502 653 PF01061.24 ABC2_membrane Family 2 148 210 80.1 1.5e-22 1 CL0181
Cotton_A_02261_CDS 172 226 166 227 PF07647.17 SAM_2 Domain 9 64 66 46.5 3e-12 1 CL0003
Cotton_A_31654_CDS 57 144 57 144 PF16656.5 Pur_ac_phosph_N Domain 1 94 94 72.9 2.4e-20 1 CL0159
Cotton_A_31654_CDS 153 343 151 343 PF00149.28 Metallophos Domain 3 204 204 89.2 4.9e-25 1 CL0163
Cotton_A_31654_CDS 358 415 358 422 PF14008.6 Metallophos_C Domain 1 58 63 57.2 2.3e-15 1 No_clan
Cotton_A_11855_CDS 545 575 544 576 PF05553.11 DUF761 Family 2 32 36 28.7 7.1e-07 1 No_clan
Cotton_A_24702_CDS 100 159 95 162 PF14497.6 GST_C_3 Domain 31 88 99 21.6 0.00018 1 CL0497
Cotton_A_24702_CDS 219 523 219 524 PF00749.21 tRNA-synt_1c Domain 1 313 314 348.2 3.2e-104 1 CL0039
Cotton_A_24702_CDS 526 703 526 703 PF03950.18 tRNA-synt_1c_C Domain 1 174 174 116.6 1.1e-33 1 No_clan
Cotton_A_27371_CDS 86 140 86 140 PF01165.20 Ribosomal_S21 Family 1 55 55 68.3 3.4e-19 1 No_clan
Cotton_A_40450_CDS 194 267 191 269 PF00078.27 RVT_1 Family 4 104 222 44.4 1.4e-11 1 CL0027
Cotton_A_06095_CDS 84 417 84 417 PF00225.23 Kinesin Domain 1 333 333 310.9 8.8e-93 1 CL0023
Cotton_A_06095_CDS 764 801 761 802 PF00514.23 Arm Repeat 4 40 41 25.9 6.8e-06 1 CL0020
Cotton_A_30498_CDS 143 235 120 237 PF00307.31 CH Domain 24 106 109 60.3 1.7e-16 1 CL0188
Cotton_A_30498_CDS 266 366 265 369 PF00307.31 CH Domain 2 106 109 81.1 6.2e-23 1 CL0188
Cotton_A_30498_CDS 392 494 390 496 PF00307.31 CH Domain 3 106 109 68.0 6.9e-19 1 CL0188
Cotton_A_30498_CDS 514 616 511 620 PF00307.31 CH Domain 4 105 109 67.4 1.1e-18 1 CL0188
Cotton_A_22103_CDS 229 264 228 265 PF03638.15 TCR Domain 2 37 38 38.9 7.8e-10 1 No_clan
Cotton_A_22103_CDS 315 351 315 352 PF03638.15 TCR Domain 1 37 38 42.4 6.4e-11 1 No_clan
Cotton_A_40823_CDS 63 153 62 299 PF03634.13 TCP Family 2 90 156 107.5 9.5e-31 1 No_clan
Cotton_A_30209_CDS 66 208 64 208 PF00582.26 Usp Domain 3 141 141 87.8 9.2e-25 1 CL0039
Cotton_A_30394_CDS 11 297 6 297 PF03151.16 TPT Family 5 290 290 87.2 1.2e-24 1 CL0184
Cotton_A_35944_CDS 2 51 1 51 PF00149.28 Metallophos Domain 160 204 204 28.0 2.8e-06 1 CL0163
Cotton_A_35944_CDS 66 124 66 130 PF14008.6 Metallophos_C Domain 1 59 63 59.7 3.7e-16 1 No_clan
Cotton_A_07607_CDS 4 64 1 65 PF13499.6 EF-hand_7 Domain 4 70 71 56.2 3.5e-15 1 CL0220
Cotton_A_07607_CDS 75 138 74 138 PF13499.6 EF-hand_7 Domain 2 71 71 48.7 8e-13 1 CL0220
Cotton_A_14812_CDS 133 279 102 284 PF01025.19 GrpE Family 15 147 166 128.4 2e-37 1 No_clan
Cotton_A_14043_CDS 18 65 18 65 PF00249.31 Myb_DNA-binding Domain 1 46 46 67.6 8.1e-19 1 CL0123
Cotton_A_14043_CDS 71 116 71 116 PF00249.31 Myb_DNA-binding Domain 1 46 46 51.1 1.1e-13 1 CL0123
Cotton_A_00709_CDS 60 151 60 151 PF16656.5 Pur_ac_phosph_N Domain 1 94 94 70.7 1.1e-19 1 CL0159
Cotton_A_00709_CDS 162 360 161 360 PF00149.28 Metallophos Domain 2 204 204 92.0 7e-26 1 CL0163
Cotton_A_00709_CDS 386 445 386 448 PF14008.6 Metallophos_C Domain 1 59 63 64.2 1.5e-17 1 No_clan
Cotton_A_03394_CDS 123 178 123 179 PF00046.29 Homeodomain Domain 1 56 57 66.9 1e-18 1 CL0123
Cotton_A_03394_CDS 315 536 315 536 PF01852.19 START Domain 1 209 209 185.8 6.6e-55 1 CL0209
Cotton_A_05831_CDS 11 294 11 294 PF00696.28 AA_kinase Family 1 241 241 151.5 2.8e-44 1 No_clan
Cotton_A_05831_CDS 340 394 334 395 PF01842.25 ACT Domain 6 66 67 38.2 8.8e-10 1 CL0070
Cotton_A_05831_CDS 410 473 407 473 PF13840.6 ACT_7 Domain 4 65 65 33.3 3e-08 1 CL0070
Cotton_A_05831_CDS 488 624 488 624 PF03447.16 NAD_binding_3 Domain 1 117 117 90.5 1.1e-25 1 CL0063
Cotton_A_08264_CDS 2 398 1 400 PF00248.21 Aldo_ket_red Domain 8 292 294 212.1 9.6e-63 1 No_clan
Cotton_A_29959_CDS 9 61 4 65 PF14697.6 Fer4_21 Domain 6 55 59 38.3 1.1e-09 1 CL0344
Cotton_A_04850_CDS 30 188 30 189 PF01554.18 MatE Family 1 159 161 104.5 4.4e-30 1 CL0222
Cotton_A_04850_CDS 267 429 267 430 PF01554.18 MatE Family 1 160 161 110.5 6e-32 1 CL0222
Cotton_A_30458_CDS 14 127 14 128 PF03859.16 CG-1 Domain 1 115 116 162.6 2.6e-48 1 No_clan
Cotton_A_30458_CDS 422 505 421 505 PF01833.24 TIG Domain 2 85 85 36.9 2.8e-09 1 CL0159
Cotton_A_30458_CDS 625 712 624 718 PF12796.7 Ank_2 Repeat 2 73 83 35.8 9.1e-09 1 CL0465
Cotton_A_30458_CDS 830 848 829 849 PF00612.27 IQ Motif 2 20 21 14.3 0.025 1 CL0220
Cotton_A_30458_CDS 853 872 852 872 PF00612.27 IQ Motif 2 21 21 23.2 3.6e-05 1 CL0220
Cotton_A_21474_CDS 28 76 23 76 PF03766.13 Remorin_N Family 5 54 54 66.2 1.9e-18 1 No_clan
Cotton_A_21474_CDS 81 185 79 185 PF03763.13 Remorin_C Family 3 107 107 113.9 3e-33 1 No_clan
Cotton_A_24867_CDS 52 158 51 158 PF04398.12 DUF538 Family 2 112 112 88.3 4.4e-25 1 No_clan
Cotton_A_22716_CDS 214 345 194 356 PF15264.6 TSSC4 Family 19 114 126 31.6 1.6e-07 1 No_clan
Cotton_A_36908_CDS 236 306 236 308 PF04564.15 U-box Domain 1 71 73 75.4 3e-21 1 CL0229
Cotton_A_36908_CDS 576 613 574 614 PF00514.23 Arm Repeat 3 40 41 40.3 2e-10 1 CL0020
Cotton_A_36908_CDS 658 695 657 696 PF00514.23 Arm Repeat 3 40 41 24.9 1.4e-05 1 CL0020
Cotton_A_23753_CDS 7 100 6 105 PF03094.15 Mlo Family 3 96 479 124.8 3.1e-36 1 No_clan
Cotton_A_23753_CDS 102 193 97 198 PF03094.15 Mlo Family 123 214 479 105.9 1.6e-30 1 No_clan
Cotton_A_23639_CDS 93 265 92 265 PF03853.15 YjeF_N Domain 2 171 171 117.4 5.9e-34 1 CL0063
Cotton_A_23639_CDS 342 414 342 416 PF01243.20 Putative_PNPOx Domain 1 74 88 77.7 5.9e-22 1 CL0336
Cotton_A_04209_CDS 130 173 129 173 PF13639.6 zf-RING_2 Domain 2 44 44 47.0 2.4e-12 1 CL0229
Cotton_A_09540_CDS 132 421 132 421 PF10475.9 Vps54_N Family 1 291 291 313.4 1.4e-93 1 CL0295
Cotton_A_09540_CDS 896 1124 895 1124 PF10474.9 DUF2451 Family 4 233 233 226.4 3.9e-67 1 No_clan
Cotton_A_05453_CDS 102 149 102 158 PF13975.6 gag-asp_proteas Domain 1 50 92 35.8 8.8e-09 1 CL0129
Cotton_A_21169_CDS 31 71 30 71 PF08263.12 LRRNT_2 Family 2 41 41 46.3 3.9e-12 1 No_clan
Cotton_A_21169_CDS 114 135 114 136 PF00560.33 LRR_1 Repeat 1 22 23 9.7 1.4 1 CL0022
Cotton_A_21169_CDS 291 347 291 350 PF13855.6 LRR_8 Repeat 2 58 61 31.3 1.3e-07 1 CL0022
Cotton_A_21169_CDS 392 408 392 414 PF00560.33 LRR_1 Repeat 1 17 23 9.6 1.6 1 CL0022
Cotton_A_21169_CDS 513 535 513 535 PF00560.33 LRR_1 Repeat 1 23 23 9.6 1.5 1 CL0022
Cotton_A_21169_CDS 825 884 824 884 PF13855.6 LRR_8 Repeat 2 61 61 37.6 1.4e-09 1 CL0022
Cotton_A_15582_CDS 118 223 118 224 PF00856.28 SET Family 1 168 169 69.0 6.4e-19 1 No_clan
Cotton_A_27044_CDS 108 224 106 225 PF01426.18 BAH Domain 3 120 122 47.1 1.9e-12 1 No_clan
Cotton_A_27044_CDS 485 767 480 771 PF00145.17 DNA_methylase Domain 130 330 335 76.3 2.6e-21 1 CL0063
Cotton_A_21881_CDS 33 274 32 276 PF01501.20 Glyco_transf_8 Family 2 254 256 130.9 6e-38 1 CL0110
Cotton_A_31377_CDS 22 46 21 47 PF13912.6 zf-C2H2_6 Domain 2 26 27 26.6 4.1e-06 1 CL0361
Cotton_A_26062_CDS 36 125 34 128 PF00153.27 Mito_carr Family 3 94 97 74.9 3.5e-21 1 No_clan
Cotton_A_26062_CDS 131 217 128 220 PF00153.27 Mito_carr Family 4 94 97 68.0 5.1e-19 1 No_clan
Cotton_A_26062_CDS 227 320 225 322 PF00153.27 Mito_carr Family 3 95 97 79.4 1.4e-22 1 No_clan
Cotton_A_04683_CDS 282 362 281 362 PF16760.5 CBM53 Family 2 81 81 61.6 7.8e-17 1 CL0576
Cotton_A_04683_CDS 456 542 456 543 PF16760.5 CBM53 Family 1 80 81 61.6 8.3e-17 1 CL0576
Cotton_A_04683_CDS 618 703 618 703 PF16760.5 CBM53 Family 1 81 81 60.5 1.8e-16 1 CL0576
Cotton_A_04683_CDS 714 904 714 915 PF08323.11 Glyco_transf_5 Domain 1 232 244 163.5 6.7e-48 1 CL0113
Cotton_A_04683_CDS 961 1083 952 1104 PF00534.20 Glycos_transf_1 Family 11 131 172 29.1 6.1e-07 1 CL0113
Cotton_A_04649_CDS 118 199 90 204 PF01786.17 AOX Family 35 123 215 46.0 4.5e-12 1 CL0044
Cotton_A_11332_CDS 605 869 601 870 PF07714.17 Pkinase_Tyr Domain 5 258 259 160.1 6.1e-47 1 CL0016
Cotton_A_29184_CDS 25 85 25 85 PF13855.6 LRR_8 Repeat 1 61 61 30.0 3.2e-07 1 CL0022
Cotton_A_29184_CDS 281 303 281 303 PF00560.33 LRR_1 Repeat 1 23 23 16.4 0.0093 1 CL0022
Cotton_A_29184_CDS 429 506 425 507 PF07714.17 Pkinase_Tyr Domain 6 89 259 45.8 4.4e-12 1 CL0016
Cotton_A_22759_CDS 112 203 111 206 PF05637.12 Glyco_transf_34 Family 2 96 239 128.6 3e-37 1 CL0110
Cotton_A_22759_CDS 207 348 204 349 PF05637.12 Glyco_transf_34 Family 153 238 239 56.8 2.6e-15 1 CL0110
Cotton_A_00566_CDS 44 65 44 66 PF02493.20 MORN Repeat 1 22 23 24.7 1.4e-05 1 CL0251
Cotton_A_00566_CDS 67 89 67 89 PF02493.20 MORN Repeat 1 23 23 17.7 0.0023 1 CL0251
Cotton_A_00566_CDS 90 112 90 112 PF02493.20 MORN Repeat 1 23 23 16.5 0.0055 1 CL0251
Cotton_A_00566_CDS 113 134 113 135 PF02493.20 MORN Repeat 1 22 23 23.0 4.7e-05 1 CL0251
Cotton_A_00566_CDS 136 157 136 158 PF02493.20 MORN Repeat 1 22 23 18.3 0.0015 1 CL0251
Cotton_A_00566_CDS 159 180 159 181 PF02493.20 MORN Repeat 1 22 23 29.6 3.9e-07 1 CL0251
Cotton_A_00566_CDS 182 203 182 204 PF02493.20 MORN Repeat 1 22 23 25.9 5.7e-06 1 CL0251
Cotton_A_00566_CDS 205 225 205 226 PF02493.20 MORN Repeat 1 22 23 17.1 0.0037 1 CL0251
Cotton_A_00566_CDS 468 791 466 792 PF01504.18 PIP5K Family 3 273 274 303.0 1.6e-90 1 CL0016
Cotton_A_36262_CDS 35 78 34 78 PF08263.12 LRRNT_2 Family 2 41 41 38.0 1.5e-09 1 No_clan
Cotton_A_36262_CDS 105 162 104 164 PF13855.6 LRR_8 Repeat 2 58 61 27.4 2e-06 1 CL0022
Cotton_A_36262_CDS 321 381 320 381 PF13855.6 LRR_8 Repeat 2 61 61 28.3 1.1e-06 1 CL0022
Cotton_A_36262_CDS 541 554 538 555 PF13516.6 LRR_6 Repeat 4 17 24 9.9 0.83 1 CL0022
Cotton_A_36262_CDS 564 578 564 593 PF00560.33 LRR_1 Repeat 1 15 23 9.6 1.6 1 CL0022
Cotton_A_36262_CDS 717 776 715 776 PF13855.6 LRR_8 Repeat 3 61 61 27.7 1.7e-06 1 CL0022
Cotton_A_36262_CDS 905 927 905 927 PF00560.33 LRR_1 Repeat 1 23 23 9.4 1.8 1 CL0022
Cotton_A_26328_CDS 60 164 60 171 PF14226.6 DIOX_N Family 1 115 118 78.4 6.8e-22 1 CL0029
Cotton_A_26328_CDS 215 310 211 310 PF03171.20 2OG-FeII_Oxy Domain 7 101 101 96.9 8.1e-28 1 CL0029
Cotton_A_28406_CDS 34 116 34 116 PF02298.17 Cu_bind_like Domain 1 84 84 84.8 3.1e-24 1 CL0026
Cotton_A_17626_CDS 34 331 33 333 PF04756.13 OST3_OST6 Family 2 291 293 223.3 4.2e-66 1 CL0172
Cotton_A_38783_CDS 32 59 31 74 PF12353.8 eIF3g Family 2 29 125 25.0 2e-05 1 CL0511
Cotton_A_19045_CDS 200 295 199 352 PF07734.13 FBA_1 Family 2 99 164 23.7 3.8e-05 1 CL0162
Cotton_A_37512_CDS 147 350 146 418 PF00069.25 Pkinase Domain 2 198 264 143.1 9.7e-42 1 CL0016
Cotton_A_22053_CDS 54 111 53 111 PF03106.15 WRKY Domain 2 59 59 85.2 2.6e-24 1 CL0274
Cotton_A_03009_CDS 10 227 9 259 PF00069.25 Pkinase Domain 2 212 264 90.6 1e-25 1 CL0016
Cotton_A_16872_CDS 19 307 19 310 PF00248.21 Aldo_ket_red Domain 1 291 294 277.4 1.2e-82 1 No_clan
Cotton_A_12789_CDS 321 367 320 368 PF00628.29 PHD Domain 2 51 52 33.3 3.2e-08 1 CL0390
Cotton_A_12789_CDS 482 527 481 529 PF00628.29 PHD Domain 2 50 52 49.8 2.2e-13 1 CL0390
Cotton_A_20865_CDS 1 425 1 426 PF02458.15 Transferase Family 1 433 434 256.2 4.6e-76 1 CL0149
Cotton_A_00175_CDS 1 220 1 221 PF03629.18 SASA Domain 13 225 226 275.9 2.5e-82 1 CL0264
Cotton_A_35815_CDS 8 95 8 99 PF12796.7 Ank_2 Repeat 1 78 83 41.3 1.8e-10 1 CL0465
Cotton_A_17521_CDS 7 60 1 74 PF14569.6 zf-UDP Domain 9 62 78 63.9 1.1e-17 1 CL0229
Cotton_A_17521_CDS 252 965 252 968 PF03552.14 Cellulose_synt Family 1 719 722 1344.0 0 1 CL0110
Cotton_A_03503_CDS 88 244 86 245 PF01699.24 Na_Ca_ex Family 4 150 151 81.0 8.4e-23 1 No_clan
Cotton_A_03503_CDS 286 403 285 415 PF01699.24 Na_Ca_ex Family 2 121 151 51.6 9.8e-14 1 No_clan
Cotton_A_30428_CDS 12 71 12 73 PF13921.6 Myb_DNA-bind_6 Domain 1 58 60 51.2 1.1e-13 1 CL0123
Cotton_A_32123_CDS 12 51 10 54 PF00646.33 F-box Domain 4 43 48 28.8 8.1e-07 1 CL0271
Cotton_A_32123_CDS 119 159 115 159 PF01344.25 Kelch_1 Repeat 8 46 46 38.2 7.8e-10 1 CL0186
Cotton_A_32123_CDS 162 207 161 207 PF01344.25 Kelch_1 Repeat 2 46 46 40.3 1.8e-10 1 CL0186
Cotton_A_38610_CDS 352 362 351 364 PF00098.23 zf-CCHC Domain 2 12 18 18.7 0.0013 1 CL0511
Cotton_A_38610_CDS 399 413 398 414 PF00098.23 zf-CCHC Domain 3 17 18 24.5 1.9e-05 1 CL0511
Cotton_A_16550_CDS 6 97 3 103 PF08969.11 USP8_dimer Domain 16 109 115 41.1 1.7e-10 1 No_clan
Cotton_A_16550_CDS 329 436 328 437 PF01398.21 JAB Family 2 117 118 68.6 4.5e-19 1 CL0366
Cotton_A_22094_CDS 92 152 92 152 PF13921.6 Myb_DNA-bind_6 Domain 1 60 60 57.9 8.7e-16 1 CL0123
Cotton_A_07450_CDS 14 53 13 58 PF00646.33 F-box Domain 2 40 48 21.1 0.0002 1 CL0271
Cotton_A_07450_CDS 242 344 230 358 PF08268.12 FBA_3 Domain 16 117 128 36.2 4.8e-09 1 CL0162
Cotton_A_17261_CDS 18 122 17 132 PF03321.13 GH3 Family 2 105 527 123.8 9e-36 1 CL0378
Cotton_A_20751_CDS 23 297 13 298 PF03151.16 TPT Family 12 289 290 56.0 3.7e-15 1 CL0184
Cotton_A_00002_CDS 2 71 1 73 PF04377.15 ATE_C Family 12 77 134 52.0 1.1e-13 1 CL0257
Cotton_A_28283_CDS 182 283 168 294 PF09335.11 SNARE_assoc Family 25 109 120 34.7 2.1e-08 1 No_clan
Cotton_A_04996_CDS 227 246 226 248 PF00642.24 zf-CCCH Family 5 25 27 23.3 4.4e-05 1 CL0537
Cotton_A_28975_CDS 13 315 4 316 PF00067.22 p450 Domain 138 429 463 151.6 3e-44 1 No_clan
Cotton_A_21996_CDS 44 218 44 218 PF14543.6 TAXi_N Domain 1 178 178 158.3 2.2e-46 1 CL0129
Cotton_A_21996_CDS 257 417 257 418 PF14541.6 TAXi_C Domain 1 160 161 195.3 5.3e-58 1 CL0129
Cotton_A_19854_CDS 61 115 60 116 PF04770.12 ZF-HD_dimer Family 2 54 55 100.7 3.9e-29 1 No_clan
Cotton_A_01025_CDS 14 166 14 167 PF00406.22 ADK Domain 1 150 151 167.0 3e-49 1 CL0023
Cotton_A_13195_CDS 28 344 28 346 PF00332.18 Glyco_hydro_17 Domain 1 311 313 288.9 5.8e-86 1 CL0058
Cotton_A_06339_CDS 48 116 48 166 PF14226.6 DIOX_N Family 1 69 118 68.4 8.9e-19 1 CL0029
Cotton_A_06339_CDS 163 258 161 260 PF03171.20 2OG-FeII_Oxy Domain 3 99 101 79.2 2.6e-22 1 CL0029
Cotton_A_22442_CDS 27 193 23 195 PF08718.11 GLTP Domain 5 147 149 143.6 5.3e-42 1 No_clan
Cotton_A_34257_CDS 28 102 27 103 PF01253.22 SUI1 Domain 2 76 77 91.8 2.9e-26 1 No_clan
Cotton_A_28921_CDS 30 68 29 69 PF08263.12 LRRNT_2 Family 2 40 41 31.8 1.3e-07 1 No_clan
Cotton_A_28921_CDS 242 303 242 303 PF13855.6 LRR_8 Repeat 1 61 61 30.5 2.3e-07 1 CL0022
Cotton_A_28921_CDS 340 361 339 361 PF00560.33 LRR_1 Repeat 2 23 23 9.6 1.6 1 CL0022
Cotton_A_28921_CDS 492 551 491 551 PF13855.6 LRR_8 Repeat 2 61 61 28.1 1.3e-06 1 CL0022
Cotton_A_19112_CDS 18 57 16 63 PF02861.20 Clp_N Family 2 41 53 29.4 6.3e-07 1 No_clan
Cotton_A_19112_CDS 96 146 96 146 PF02861.20 Clp_N Family 1 53 53 38.2 1.1e-09 1 No_clan
Cotton_A_19112_CDS 204 317 203 341 PF00004.29 AAA Domain 2 111 132 52.0 9.5e-14 1 CL0023
Cotton_A_19112_CDS 343 444 343 446 PF17871.1 AAA_lid_9 Domain 1 102 104 120.8 2.1e-35 1 CL0671
Cotton_A_19112_CDS 597 761 596 761 PF07724.14 AAA_2 Domain 2 171 171 182.5 6.9e-54 1 CL0023
Cotton_A_19112_CDS 767 847 767 847 PF10431.9 ClpB_D2-small Domain 1 81 81 78.1 4e-22 1 CL0671
Cotton_A_25922_CDS 42 180 41 180 PF04116.13 FA_hydroxylase Family 2 133 133 63.8 2e-17 1 No_clan
Cotton_A_12904_CDS 52 155 52 155 PF00011.21 HSP20 Family 1 102 102 111.6 1.7e-32 1 CL0190
Cotton_A_21715_CDS 199 451 199 451 PF03000.14 NPH3 Family 1 258 258 309.8 1.6e-92 1 No_clan
Cotton_A_11780_CDS 46 105 45 105 PF17181.4 EPF Family 2 53 53 77.2 7e-22 1 No_clan
Cotton_A_29908_CDS 133 600 132 600 PF01293.20 PEPCK_ATP Family 2 465 465 709.8 1.4e-213 1 CL0374
Cotton_A_07076_CDS 128 507 127 507 PF00155.21 Aminotran_1_2 Domain 2 363 363 269.1 6.2e-80 1 CL0061
Cotton_A_28977_CDS 91 117 91 118 PF01535.20 PPR Family 4 30 31 19.7 0.0007 1 CL0020
Cotton_A_28977_CDS 119 143 119 143 PF01535.20 PPR Family 1 25 31 17.6 0.0033 1 CL0020
Cotton_A_28977_CDS 147 194 147 196 PF13041.6 PPR_2 Repeat 1 48 50 31.1 1.9e-07 1 CL0020
Cotton_A_28977_CDS 280 327 279 328 PF13041.6 PPR_2 Repeat 2 49 50 34.6 1.6e-08 1 CL0020
Cotton_A_28977_CDS 380 412 380 415 PF13041.6 PPR_2 Repeat 1 33 50 31.0 2.2e-07 1 CL0020
Cotton_A_28977_CDS 414 443 414 444 PF01535.20 PPR Family 1 30 31 17.3 0.004 1 CL0020
Cotton_A_28977_CDS 487 513 487 514 PF01535.20 PPR Family 4 30 31 14.1 0.043 1 CL0020
Cotton_A_28977_CDS 515 543 515 545 PF01535.20 PPR Family 1 29 31 26.3 5.3e-06 1 CL0020
Cotton_A_28977_CDS 588 612 587 614 PF01535.20 PPR Family 2 26 31 16.9 0.0055 1 CL0020
Cotton_A_02911_CDS 30 89 27 92 PF01423.22 LSM Domain 4 57 67 34.4 1.3e-08 1 CL0527
Cotton_A_24666_CDS 164 205 163 206 PF06203.14 CCT Motif 2 43 44 66.7 1.3e-18 1 CL0281
Cotton_A_34985_CDS 45 101 42 102 PF01504.18 PIP5K Family 221 273 274 36.7 2.7e-09 1 CL0016
Cotton_A_24831_CDS 10 57 10 57 PF00319.18 SRF-TF Domain 1 48 48 87.7 2.5e-25 1 No_clan
Cotton_A_21293_CDS 97 259 75 261 PF00083.24 Sugar_tr Family 156 322 452 96.4 1.7e-27 1 CL0015
Cotton_A_22318_CDS 107 160 106 160 PF14416.6 PMR5N Domain 2 53 53 76.7 1.2e-21 1 No_clan
Cotton_A_22318_CDS 163 444 161 445 PF13839.6 PC-Esterase Family 3 282 283 282.6 4.4e-84 1 CL0264
Cotton_A_14181_CDS 423 478 422 481 PF12329.8 TMF_DNA_bd Coiled-coil 2 57 74 52.0 5.4e-14 1 No_clan
Cotton_A_14181_CDS 843 950 836 950 PF12325.8 TMF_TATA_bd Coiled-coil 8 115 115 107.2 5.5e-31 1 No_clan
Cotton_A_10558_CDS 113 324 99 355 PF00933.21 Glyco_hydro_3 Domain 84 282 319 126.4 1.5e-36 1 CL0058
Cotton_A_10558_CDS 398 625 398 625 PF01915.22 Glyco_hydro_3_C Domain 1 204 204 176.8 5e-52 1 No_clan
Cotton_A_10558_CDS 692 757 689 759 PF14310.6 Fn3-like Family 4 69 71 32.9 5.2e-08 1 CL0159
Cotton_A_15314_CDS 58 143 57 144 PF13837.6 Myb_DNA-bind_4 Domain 2 89 90 66.5 2e-18 1 CL0123
Cotton_A_15314_CDS 315 400 314 402 PF13837.6 Myb_DNA-bind_4 Domain 2 88 90 77.0 1.1e-21 1 CL0123
Cotton_A_06341_CDS 1 102 1 104 PF05773.22 RWD Domain 5 114 116 38.1 1.6e-09 1 CL0208
Cotton_A_06341_CDS 114 157 114 167 PF13445.6 zf-RING_UBOX Domain 1 28 39 21.7 0.00015 1 CL0229
Cotton_A_15236_CDS 35 222 35 222 PF00445.18 Ribonuclease_T2 Domain 1 182 182 166.1 9.4e-49 1 No_clan
Cotton_A_02389_CDS 86 236 85 236 PF04043.15 PMEI Domain 2 154 154 107.6 7.4e-31 1 No_clan
Cotton_A_02389_CDS 352 566 351 567 PF01095.19 Pectinesterase Family 83 297 298 366.6 6.4e-110 1 CL0268
Cotton_A_12198_CDS 78 163 77 163 PF03330.18 DPBB_1 Domain 2 83 83 62.0 4.8e-17 1 CL0199
Cotton_A_12198_CDS 174 251 174 251 PF01357.21 Pollen_allerg_1 Domain 1 80 80 89.6 1e-25 1 CL0159
Cotton_A_21642_CDS 101 131 100 132 PF02987.16 LEA_4 Repeat 2 32 44 32.2 8.4e-08 1 No_clan
Cotton_A_21642_CDS 130 166 129 167 PF02987.16 LEA_4 Repeat 2 38 44 36.9 2.8e-09 1 No_clan
Cotton_A_21642_CDS 162 205 162 205 PF02987.16 LEA_4 Repeat 1 44 44 40.0 3.1e-10 1 No_clan
Cotton_A_21642_CDS 184 227 184 227 PF02987.16 LEA_4 Repeat 1 44 44 48.0 9.7e-13 1 No_clan
Cotton_A_21642_CDS 206 249 206 249 PF02987.16 LEA_4 Repeat 1 44 44 50.5 1.5e-13 1 No_clan
Cotton_A_21642_CDS 228 271 228 271 PF02987.16 LEA_4 Repeat 1 44 44 49.9 2.5e-13 1 No_clan
Cotton_A_21642_CDS 274 315 272 315 PF02987.16 LEA_4 Repeat 3 44 44 50.2 1.9e-13 1 No_clan
Cotton_A_21642_CDS 316 358 316 359 PF02987.16 LEA_4 Repeat 1 43 44 48.1 8.9e-13 1 No_clan
Cotton_A_21642_CDS 360 401 360 403 PF02987.16 LEA_4 Repeat 1 42 44 56.4 2.3e-15 1 No_clan
Cotton_A_21642_CDS 404 446 404 447 PF02987.16 LEA_4 Repeat 1 43 44 34.7 1.3e-08 1 No_clan
Cotton_A_19373_CDS 14 78 13 79 PF00313.22 CSD Domain 2 65 66 78.8 1.9e-22 1 CL0021
Cotton_A_19373_CDS 107 122 106 123 PF00098.23 zf-CCHC Domain 2 17 18 26.2 5.6e-06 1 CL0511
Cotton_A_19373_CDS 141 156 140 157 PF00098.23 zf-CCHC Domain 2 17 18 31.2 1.5e-07 1 CL0511
Cotton_A_19373_CDS 177 390 177 390 PF00314.17 Thaumatin Domain 1 214 214 278.2 4.2e-83 1 CL0293
Cotton_A_19202_CDS 54 97 53 99 PF00628.29 PHD Domain 2 50 52 34.0 2e-08 1 CL0390
Cotton_A_19202_CDS 103 157 101 173 PF00385.24 Chromo Domain 3 43 54 38.2 1e-09 1 CL0049
Cotton_A_19202_CDS 194 242 193 243 PF00385.24 Chromo Domain 2 53 54 48.4 6.5e-13 1 CL0049
Cotton_A_19202_CDS 306 585 293 586 PF00176.23 SNF2_N Family 58 349 350 216.4 4.4e-64 1 CL0023
Cotton_A_19202_CDS 609 722 608 722 PF00271.31 Helicase_C Family 2 111 111 63.7 1.7e-17 1 CL0023
Cotton_A_35767_CDS 28 145 27 145 PF08615.11 RNase_H2_suC Family 2 141 141 57.8 1.3e-15 1 CL0662
Cotton_A_30395_CDS 28 133 28 134 PF10436.9 BCDHK_Adom3 Family 1 105 162 119.2 1.5e-34 1 No_clan
Cotton_A_16725_CDS 1 143 1 143 PF15370.6 DUF4598 Family 12 111 111 30.2 5e-07 1 No_clan
Cotton_A_26080_CDS 211 273 211 273 PF01485.21 IBR Domain 1 62 62 57.3 1.3e-15 1 CL0229
Cotton_A_26080_CDS 290 339 276 342 PF01485.21 IBR Domain 12 59 62 38.4 1.1e-09 1 CL0229
Cotton_A_15091_CDS 65 357 61 357 PF00579.25 tRNA-synt_1b Family 5 293 293 226.7 3.7e-67 1 CL0039
Cotton_A_01577_CDS 27 397 26 397 PF03676.14 UPF0183 Family 2 390 390 466.4 9e-140 1 No_clan
Cotton_A_18438_CDS 25 49 25 54 PF01535.20 PPR Family 1 25 31 10.6 0.56 1 CL0020
Cotton_A_18438_CDS 53 101 53 102 PF13041.6 PPR_2 Repeat 1 49 50 35.9 6.1e-09 1 CL0020
Cotton_A_33944_CDS 52 105 51 106 PF00646.33 F-box Domain 2 47 48 41.1 1.1e-10 1 CL0271
Cotton_A_33944_CDS 116 419 116 419 PF01167.18 Tub Domain 1 241 241 334.7 3.7e-100 1 CL0395
Cotton_A_03732_CDS 52 604 52 608 PF02990.16 EMP70 Family 1 515 519 602.7 5.8e-181 1 No_clan
Cotton_A_18850_CDS 97 139 97 139 PF12799.7 LRR_4 Repeat 1 44 44 27.2 3.7e-06 1 CL0022
Cotton_A_20742_CDS 6 125 6 128 PF01408.22 GFO_IDH_MocA Family 1 117 120 69.8 3.5e-19 1 CL0063
Cotton_A_23028_CDS 102 383 102 383 PF03034.15 PSS Family 1 273 273 362.5 1.7e-108 1 No_clan
Cotton_A_23309_CDS 41 206 40 207 PF13668.6 Ferritin_2 Domain 2 135 136 113.0 1.2e-32 1 CL0044
Cotton_A_28530_CDS 202 223 201 223 PF00560.33 LRR_1 Repeat 2 23 23 10.7 0.7 1 CL0022
Cotton_A_17971_CDS 45 86 44 86 PF08263.12 LRRNT_2 Family 7 41 41 20.6 0.0004 1 No_clan
Cotton_A_17971_CDS 160 218 158 218 PF13855.6 LRR_8 Repeat 3 61 61 35.0 8.6e-09 1 CL0022
Cotton_A_09964_CDS 67 122 66 142 PF03634.13 TCP Family 2 61 156 86.3 3e-24 1 No_clan
Cotton_A_23010_CDS 98 208 96 208 PF10184.9 DUF2358 Family 3 113 113 129.9 4.8e-38 1 CL0051
Cotton_A_25312_CDS 56 91 46 105 PF02878.16 PGM_PMM_I Domain 89 124 138 28.5 1e-06 1 No_clan
Cotton_A_25312_CDS 124 177 94 183 PF02878.16 PGM_PMM_I Domain 38 90 138 23.2 4.4e-05 1 No_clan
Cotton_A_25312_CDS 307 397 307 410 PF02880.16 PGM_PMM_III Domain 1 77 114 29.4 7.4e-07 1 No_clan
Cotton_A_25312_CDS 494 550 474 552 PF00408.20 PGM_PMM_IV Family 22 72 74 44.0 1.9e-11 1 No_clan
Cotton_A_09505_CDS 58 153 57 154 PF08241.12 Methyltransf_11 Domain 2 95 96 31.1 2.8e-07 1 CL0063
Cotton_A_11949_CDS 291 330 290 330 PF13639.6 zf-RING_2 Domain 2 44 44 41.4 1.3e-10 1 CL0229
Cotton_A_40055_CDS 83 114 83 118 PF17766.1 fn3_6 Domain 1 32 99 28.7 1.1e-06 1 CL0159
Cotton_A_04729_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 60.5 1.3e-16 1 CL0123
Cotton_A_04729_CDS 67 111 67 112 PF00249.31 Myb_DNA-binding Domain 1 45 46 53.8 1.6e-14 1 CL0123
Cotton_A_07309_CDS 181 343 176 343 PF02622.15 DUF179 Family 7 160 160 110.0 1.1e-31 1 No_clan
Cotton_A_10331_CDS 312 592 308 592 PF03016.15 Exostosin Family 5 300 300 194.4 2.5e-57 1 No_clan
Cotton_A_19047_CDS 75 160 75 166 PF01453.24 B_lectin Domain 1 90 105 59.1 5e-16 1 No_clan
Cotton_A_19047_CDS 247 315 222 317 PF00954.20 S_locus_glycop Domain 43 109 111 29.3 9.6e-07 1 No_clan
Cotton_A_19047_CDS 503 703 501 768 PF00069.25 Pkinase Domain 4 198 264 155.6 1.5e-45 1 CL0016
Cotton_A_28831_CDS 53 328 49 330 PF00246.24 Peptidase_M14 Domain 5 288 289 96.5 2.5e-27 1 CL0035
Cotton_A_19419_CDS 9 172 8 173 PF00160.21 Pro_isomerase Domain 2 157 158 173.7 3.2e-51 1 CL0475
Cotton_A_19419_CDS 299 332 299 332 PF00515.28 TPR_1 Repeat 1 34 34 32.2 6.1e-08 1 CL0020
Cotton_A_06700_CDS 80 123 79 123 PF13639.6 zf-RING_2 Domain 2 44 44 48.6 7.5e-13 1 CL0229
Cotton_A_24362_CDS 71 128 71 137 PF00076.22 RRM_1 Domain 1 57 70 43.9 1.5e-11 1 CL0221
Cotton_A_24362_CDS 194 248 194 259 PF00076.22 RRM_1 Domain 1 54 70 50.1 1.8e-13 1 CL0221
Cotton_A_17084_CDS 163 220 163 221 PF03106.15 WRKY Domain 1 58 59 82.7 1.5e-23 1 CL0274
Cotton_A_24969_CDS 28 270 27 271 PF01501.20 Glyco_transf_8 Family 2 255 256 134.4 4.9e-39 1 CL0110
Cotton_A_00097_CDS 74 122 72 122 PF00010.26 HLH Domain 4 53 53 35.7 6e-09 1 No_clan
Cotton_A_08683_CDS 12 197 12 197 PF14215.6 bHLH-MYC_N Family 1 175 175 90.3 1.7e-25 1 CL0161
Cotton_A_02001_CDS 2 550 1 551 PF03169.15 OPT Family 102 615 616 470.2 1.1e-140 1 No_clan
Cotton_A_02535_CDS 79 114 77 121 PF00646.33 F-box Domain 3 38 48 23.3 4.2e-05 1 CL0271
Cotton_A_02535_CDS 217 263 216 263 PF01344.25 Kelch_1 Repeat 2 46 46 47.7 8.6e-13 1 CL0186
Cotton_A_27260_CDS 13 71 13 71 PF00226.31 DnaJ Domain 1 63 63 81.7 3.1e-23 1 CL0392
Cotton_A_27260_CDS 122 343 121 343 PF01556.18 DnaJ_C Domain 2 148 148 141.5 2.1e-41 1 No_clan
Cotton_A_27260_CDS 148 214 148 214 PF00684.19 DnaJ_CXXCXGXG Domain 1 67 67 55.6 5.1e-15 1 No_clan
Cotton_A_00355_CDS 24 177 24 178 PF06521.11 PAR1 Family 1 155 156 249.7 7.9e-75 1 No_clan
Cotton_A_00262_CDS 10 230 6 235 PF01151.18 ELO Family 5 237 250 154.9 2.6e-45 1 No_clan
Cotton_A_17788_CDS 33 144 28 150 PF04043.15 PMEI Domain 23 148 154 37.7 2.4e-09 1 No_clan
Cotton_A_17004_CDS 7 96 6 98 PF02362.21 B3 Family 2 99 101 53.3 1.9e-14 1 CL0405
Cotton_A_17004_CDS 218 305 203 307 PF02362.21 B3 Family 11 99 101 50.4 1.5e-13 1 CL0405
Cotton_A_17004_CDS 355 454 355 456 PF02362.21 B3 Family 1 99 101 54.9 6.2e-15 1 CL0405
Cotton_A_17004_CDS 500 584 491 587 PF02362.21 B3 Family 10 98 101 44.8 8.6e-12 1 CL0405
Cotton_A_23628_CDS 157 682 157 682 PF03141.16 Methyltransf_29 Family 1 506 506 471.6 2.7e-141 1 CL0063
Cotton_A_32229_CDS 42 162 41 162 PF05743.13 UEV Domain 2 121 121 134.7 1.4e-39 1 CL0208
Cotton_A_32229_CDS 335 397 334 397 PF09454.10 Vps23_core Domain 2 64 64 81.4 3.3e-23 1 CL0596
Cotton_A_28373_CDS 79 129 78 130 PF00847.20 AP2 Domain 2 53 54 52.3 4.9e-14 1 CL0081
Cotton_A_13798_CDS 62 167 61 168 PF01453.24 B_lectin Domain 3 104 105 79.6 2.1e-22 1 No_clan
Cotton_A_09330_CDS 15 94 14 96 PF07011.11 Elf4 Domain 2 81 83 132.2 4.6e-39 1 No_clan
Cotton_A_35167_CDS 5 269 4 269 PF01459.22 Porin_3 Family 2 270 270 243.4 2.8e-72 1 CL0193
Cotton_A_11969_CDS 60 84 59 85 PF13912.6 zf-C2H2_6 Domain 2 26 27 31.7 1.1e-07 1 CL0361
Cotton_A_11969_CDS 136 158 135 159 PF13912.6 zf-C2H2_6 Domain 4 26 27 26.4 4.9e-06 1 CL0361
Cotton_A_01657_CDS 42 159 42 163 PF00188.26 CAP Domain 1 123 126 66.9 3e-18 1 CL0659
Cotton_A_05216_CDS 7 100 6 106 PF00168.30 C2 Domain 2 96 103 45.0 1.1e-11 1 CL0154
Cotton_A_27533_CDS 3 197 1 202 PF03662.14 Glyco_hydro_79n Domain 59 250 318 282.9 2.6e-84 1 CL0058
Cotton_A_16408_CDS 141 242 141 244 PF02362.21 B3 Family 1 99 101 69.8 1.5e-19 1 CL0405
Cotton_A_16408_CDS 268 351 268 351 PF06507.13 Auxin_resp Family 1 83 83 109.7 6.1e-32 1 No_clan
Cotton_A_16408_CDS 820 909 794 913 PF02309.16 AUX_IAA Family 123 232 237 40.3 3.1e-10 1 CL0072
Cotton_A_16922_CDS 18 81 16 82 PF00690.26 Cation_ATPase_N Domain 3 68 69 51.8 4.9e-14 1 No_clan
Cotton_A_16922_CDS 131 308 129 309 PF00122.20 E1-E2_ATPase Family 4 180 181 164.2 2.2e-48 1 No_clan
Cotton_A_16922_CDS 325 602 325 602 PF00702.26 Hydrolase Domain 1 210 210 69.6 4.5e-19 1 CL0137
Cotton_A_06908_CDS 43 498 41 511 PF00067.22 p450 Domain 3 450 463 291.5 1.1e-86 1 No_clan
Cotton_A_02868_CDS 12 77 8 85 PF16543.5 DFRP_C Domain 11 76 89 57.6 1.4e-15 1 No_clan
Cotton_A_14797_CDS 41 74 38 84 PF16544.5 STAR_dimer Domain 7 40 53 29.8 3.2e-07 1 No_clan
Cotton_A_15953_CDS 4 86 4 124 PF14223.6 Retrotran_gag_2 Family 1 83 138 27.7 1.7e-06 1 CL0523
Cotton_A_17254_CDS 166 332 103 345 PF00931.22 NB-ARC Domain 58 225 252 98.7 2.9e-28 1 CL0023
Cotton_A_32335_CDS 2 62 1 66 PF13456.6 RVT_3 Domain 59 120 124 40.3 2.3e-10 1 CL0219
Cotton_A_22140_CDS 14 70 13 72 PF10440.9 WIYLD Domain 3 58 61 74.4 4.6e-21 1 CL0214
Cotton_A_04010_CDS 34 87 34 90 PF02704.14 GASA Family 1 53 60 55.6 4.2e-15 1 No_clan
Cotton_A_10643_CDS 90 295 66 296 PF04045.14 P34-Arc Family 30 239 240 114.1 7.9e-33 1 No_clan
Cotton_A_16863_CDS 12 298 11 299 PF00291.25 PALP Family 2 293 294 219.2 7.9e-65 1 CL0063
Cotton_A_32121_CDS 459 505 459 507 PF13041.6 PPR_2 Repeat 1 47 50 41.9 8.4e-11 1 CL0020
Cotton_A_08535_CDS 2 50 1 50 PF06741.13 LsmAD Domain 24 71 71 46.9 3e-12 1 No_clan
Cotton_A_08535_CDS 164 175 163 176 PF07145.15 PAM2 Motif 2 13 18 20.2 0.00032 1 No_clan
Cotton_A_20321_CDS 10 102 8 105 PF03226.14 Yippee-Mis18 Domain 3 91 105 59.1 4e-16 1 CL0080
Cotton_A_32154_CDS 34 105 34 106 PF07983.13 X8 Domain 1 75 76 74.5 8.2e-21 1 No_clan
Cotton_A_14823_CDS 37 125 37 137 PF01453.24 B_lectin Domain 1 91 105 76.3 2.3e-21 1 No_clan
Cotton_A_14823_CDS 491 752 489 755 PF00069.25 Pkinase Domain 4 258 264 167.3 4.3e-49 1 CL0016
Cotton_A_24025_CDS 43 78 1 78 PF12734.7 CYSTM Family 6 42 42 38.5 1e-09 1 No_clan
Cotton_A_07125_CDS 55 327 55 328 PF01650.18 Peptidase_C13 Family 1 255 256 363.4 6.2e-109 1 CL0093
Cotton_A_03908_CDS 73 147 58 150 PF00153.27 Mito_carr Family 19 89 97 40.4 2.1e-10 1 No_clan
Cotton_A_03908_CDS 168 229 159 247 PF00153.27 Mito_carr Family 16 74 97 26.5 4.4e-06 1 No_clan
Cotton_A_03908_CDS 263 322 261 340 PF00153.27 Mito_carr Family 18 80 97 32.7 5.1e-08 1 No_clan
Cotton_A_03908_CDS 511 588 498 591 PF00153.27 Mito_carr Family 17 90 97 53.1 2.3e-14 1 No_clan
Cotton_A_03908_CDS 596 676 593 686 PF00153.27 Mito_carr Family 4 80 97 45.2 6.7e-12 1 No_clan
Cotton_A_03908_CDS 710 774 707 780 PF00153.27 Mito_carr Family 19 84 97 43.1 3.1e-11 1 No_clan
Cotton_A_02598_CDS 70 444 70 444 PF00266.19 Aminotran_5 Domain 1 371 371 475.8 8.6e-143 1 CL0061
Cotton_A_27435_CDS 254 276 254 277 PF07557.11 Shugoshin_C Family 3 24 25 30.9 1.7e-07 1 No_clan
Cotton_A_05074_CDS 202 284 200 286 PF00564.24 PB1 Domain 3 81 84 67.6 6.6e-19 1 CL0072
Cotton_A_05074_CDS 995 1256 993 1256 PF07714.17 Pkinase_Tyr Domain 3 259 259 218.6 8.4e-65 1 CL0016
Cotton_A_23084_CDS 114 162 113 162 PF13041.6 PPR_2 Repeat 2 50 50 46.0 4.5e-12 1 CL0020
Cotton_A_23084_CDS 179 212 179 212 PF12854.7 PPR_1 Repeat 1 34 34 33.7 2.2e-08 1 CL0020
Cotton_A_23084_CDS 218 267 218 267 PF13041.6 PPR_2 Repeat 1 50 50 62.5 3e-17 1 CL0020
Cotton_A_23084_CDS 289 337 288 337 PF13041.6 PPR_2 Repeat 2 50 50 59.6 2.4e-16 1 CL0020
Cotton_A_23084_CDS 354 387 354 387 PF12854.7 PPR_1 Repeat 1 34 34 48.8 4.2e-13 1 CL0020
Cotton_A_23084_CDS 393 442 393 442 PF13041.6 PPR_2 Repeat 1 50 50 64.6 7e-18 1 CL0020
Cotton_A_23084_CDS 463 512 463 512 PF13041.6 PPR_2 Repeat 1 50 50 50.6 1.6e-13 1 CL0020
Cotton_A_23084_CDS 534 582 533 582 PF13041.6 PPR_2 Repeat 2 50 50 58.5 5.5e-16 1 CL0020
Cotton_A_23084_CDS 607 636 606 636 PF01535.20 PPR Family 2 31 31 21.8 0.00014 1 CL0020
Cotton_A_35087_CDS 195 495 181 497 PF10250.9 O-FucT Family 22 333 336 42.2 8.2e-11 1 CL0113
Cotton_A_05406_CDS 124 144 124 144 PF00612.27 IQ Motif 1 21 21 25.2 8.2e-06 1 CL0220
Cotton_A_05406_CDS 150 164 147 166 PF00612.27 IQ Motif 5 19 21 15.6 0.01 1 CL0220
Cotton_A_05406_CDS 308 386 294 399 PF13178.6 DUF4005 Family 17 64 93 57.6 1.6e-15 1 No_clan
Cotton_A_27281_CDS 164 176 162 179 PF13516.6 LRR_6 Repeat 3 15 24 9.1 1.4 1 CL0022
Cotton_A_27281_CDS 195 253 193 253 PF13855.6 LRR_8 Repeat 3 61 61 31.5 1.1e-07 1 CL0022
Cotton_A_27281_CDS 336 351 335 352 PF13516.6 LRR_6 Repeat 2 17 24 12.8 0.092 1 CL0022
Cotton_A_28745_CDS 171 235 170 238 PF00505.19 HMG_box Domain 2 66 69 59.9 2.5e-16 1 CL0114
Cotton_A_28745_CDS 287 355 287 355 PF00505.19 HMG_box Domain 1 69 69 66.1 2.7e-18 1 CL0114
Cotton_A_28745_CDS 414 482 414 482 PF00505.19 HMG_box Domain 1 69 69 56.9 2.1e-15 1 CL0114
Cotton_A_03126_CDS 20 186 17 189 PF03357.21 Snf7 Family 4 170 173 155.3 1.1e-45 1 CL0235
Cotton_A_13709_CDS 44 292 39 312 PF00067.22 p450 Domain 6 245 463 84.4 6.8e-24 1 No_clan
Cotton_A_05323_CDS 51 225 51 225 PF07800.12 DUF1644 Family 1 168 168 237.9 6.3e-71 1 CL0229
Cotton_A_09584_CDS 49 162 28 163 PF01161.20 PBP Domain 11 131 132 51.3 1.4e-13 1 No_clan
Cotton_A_22879_CDS 259 286 258 288 PF01535.20 PPR Family 2 29 31 16.0 0.011 1 CL0020
Cotton_A_22879_CDS 294 335 290 338 PF13812.6 PPR_3 Repeat 17 59 63 20.7 0.00031 1 CL0020
Cotton_A_22879_CDS 348 407 347 409 PF13812.6 PPR_3 Repeat 2 61 63 23.6 3.9e-05 1 CL0020
Cotton_A_22879_CDS 466 494 465 494 PF01535.20 PPR Family 3 31 31 15.7 0.013 1 CL0020
Cotton_A_22879_CDS 499 523 499 528 PF01535.20 PPR Family 1 25 31 9.8 1 1 CL0020
Cotton_A_22879_CDS 536 564 535 565 PF01535.20 PPR Family 2 30 31 16.4 0.0076 1 CL0020
Cotton_A_40713_CDS 72 94 71 95 PF12171.8 zf-C2H2_jaz Family 2 24 27 24.2 3e-05 1 CL0361
Cotton_A_00590_CDS 268 338 268 340 PF04564.15 U-box Domain 1 71 73 79.2 1.9e-22 1 CL0229
Cotton_A_00590_CDS 391 430 391 431 PF00514.23 Arm Repeat 1 40 41 34.2 1.7e-08 1 CL0020
Cotton_A_00590_CDS 474 512 474 513 PF00514.23 Arm Repeat 2 40 41 31.5 1.2e-07 1 CL0020
Cotton_A_00590_CDS 514 549 514 554 PF00514.23 Arm Repeat 1 36 41 23.5 3.9e-05 1 CL0020
Cotton_A_05633_CDS 52 155 52 156 PF00011.21 HSP20 Family 1 101 102 102.6 1.1e-29 1 CL0190
Cotton_A_04117_CDS 51 95 51 118 PF00685.27 Sulfotransfer_1 Domain 1 44 267 22.8 5.4e-05 1 CL0023
Cotton_A_04117_CDS 119 248 95 249 PF00685.27 Sulfotransfer_1 Domain 147 266 267 102.3 3.1e-29 1 CL0023
Cotton_A_01763_CDS 54 96 54 96 PF16711.5 SCAB-ABD Domain 1 43 43 80.9 4.4e-23 1 No_clan
Cotton_A_01763_CDS 100 267 100 267 PF16712.5 SCAB_CC Family 1 168 168 271.2 2.9e-81 1 No_clan
Cotton_A_01763_CDS 281 378 281 378 PF16709.5 SCAB-Ig Domain 1 98 98 155.5 2.9e-46 1 CL0159
Cotton_A_01763_CDS 381 488 381 488 PF17684.1 SCAB-PH Domain 1 108 108 193.1 1e-57 1 CL0266
Cotton_A_15539_CDS 13 324 13 325 PF00657.22 Lipase_GDSL Family 1 199 200 62.6 4.7e-17 1 CL0264
Cotton_A_08331_CDS 593 666 592 666 PF16135.5 Jas Family 2 76 76 85.8 1.6e-24 1 No_clan
Cotton_A_01655_CDS 888 1011 888 1011 PF18868.1 zf-C2H2_3rep Repeat 1 126 126 207.1 1.1e-61 1 No_clan
Cotton_A_01655_CDS 1240 1373 1239 1373 PF05033.16 Pre-SET Family 2 109 109 55.3 8.6e-15 1 No_clan
Cotton_A_13139_CDS 53 157 53 159 PF14226.6 DIOX_N Family 1 116 118 85.5 4.3e-24 1 CL0029
Cotton_A_13139_CDS 207 303 203 303 PF03171.20 2OG-FeII_Oxy Domain 5 101 101 90.9 5.7e-26 1 CL0029
Cotton_A_21453_CDS 89 165 75 165 PF02225.22 PA Family 17 89 89 31.3 1.5e-07 1 CL0364
Cotton_A_21453_CDS 241 518 237 520 PF04258.13 Peptidase_A22B Family 6 282 284 283.8 1.6e-84 1 CL0130
Cotton_A_37192_CDS 261 376 261 376 PF13911.6 AhpC-TSA_2 Domain 1 113 113 55.6 5e-15 1 CL0172
Cotton_A_02549_CDS 46 93 46 95 PF00847.20 AP2 Domain 1 52 54 23.1 6.4e-05 1 CL0081
Cotton_A_02549_CDS 172 269 172 283 PF02362.21 B3 Family 1 85 101 86.5 8.7e-25 1 CL0405
Cotton_A_25243_CDS 34 162 34 162 PF02365.15 NAM Family 1 126 126 100.6 1.1e-28 1 No_clan
Cotton_A_06502_CDS 195 344 194 374 PF00069.25 Pkinase Domain 2 148 264 125.3 2.7e-36 1 CL0016
Cotton_A_06502_CDS 428 531 417 531 PF00069.25 Pkinase Domain 154 264 264 74.1 1.2e-20 1 CL0016
Cotton_A_32944_CDS 144 214 143 215 PF02594.16 DUF167 Domain 2 76 77 64.1 9.6e-18 1 No_clan
Cotton_A_06187_CDS 21 91 20 91 PF07983.13 X8 Domain 2 76 76 77.7 8.3e-22 1 No_clan
Cotton_A_00802_CDS 21 134 21 135 PF03859.16 CG-1 Domain 1 115 116 174.7 4.8e-52 1 No_clan
Cotton_A_00802_CDS 494 573 493 579 PF01833.24 TIG Domain 3 79 85 29.5 5.7e-07 1 CL0159
Cotton_A_00802_CDS 894 913 894 914 PF00612.27 IQ Motif 1 20 21 18.1 0.0016 1 CL0220
Cotton_A_00802_CDS 918 937 917 937 PF00612.27 IQ Motif 2 21 21 19.7 0.00046 1 CL0220
Cotton_A_15130_CDS 179 215 161 219 PF08711.11 Med26 Domain 13 49 53 39.6 3.9e-10 1 No_clan
Cotton_A_38120_CDS 28 254 27 256 PF00194.21 Carb_anhydrase Domain 2 252 254 173.5 5.9e-51 1 No_clan
Cotton_A_33651_CDS 254 339 250 340 PF02517.16 CPBP Family 5 91 92 76.3 1.8e-21 1 CL0472
Cotton_A_24114_CDS 71 90 69 93 PF00010.26 HLH Domain 4 23 53 20.8 0.00028 1 No_clan
Cotton_A_19149_CDS 10 84 8 84 PF02798.20 GST_N Domain 3 76 76 58.7 5.5e-16 1 CL0172
Cotton_A_33503_CDS 32 114 19 151 PF00117.28 GATase Domain 16 93 190 26.4 5.1e-06 1 CL0014
Cotton_A_30289_CDS 2 105 1 106 PF00252.18 Ribosomal_L16 Family 15 121 132 119.5 9.4e-35 1 No_clan
Cotton_A_20104_CDS 22 450 22 450 PF04209.13 HgmA Family 1 426 426 705.1 2.6e-212 1 CL0029
Cotton_A_34291_CDS 55 317 51 321 PF07714.17 Pkinase_Tyr Domain 5 255 259 150.1 6.7e-44 1 CL0016
Cotton_A_08064_CDS 45 342 45 342 PF03372.23 Exo_endo_phos Domain 1 233 233 47.6 1.4e-12 1 CL0530
Cotton_A_29683_CDS 27 273 27 273 PF06813.13 Nodulin-like Family 1 250 250 308.9 2.5e-92 1 CL0015
Cotton_A_29683_CDS 377 562 344 595 PF07690.16 MFS_1 Family 20 176 353 38.7 5.7e-10 1 CL0015
Cotton_A_09690_CDS 59 83 59 84 PF02037.27 SAP Family 1 25 35 28.5 8.8e-07 1 CL0306
Cotton_A_06520_CDS 28 104 26 104 PF18290.1 Nudix_hydro Domain 3 80 80 95.9 1e-27 1 No_clan
Cotton_A_06520_CDS 117 238 116 243 PF00293.28 NUDIX Domain 2 124 131 77.6 8.4e-22 1 CL0261
Cotton_A_07545_CDS 41 201 41 201 PF01554.18 MatE Family 1 161 161 124.7 2.6e-36 1 CL0222
Cotton_A_07545_CDS 262 424 262 425 PF01554.18 MatE Family 1 160 161 124.5 2.9e-36 1 CL0222
Cotton_A_35710_CDS 30 92 29 93 PF13499.6 EF-hand_7 Domain 2 70 71 58.6 6.4e-16 1 CL0220
Cotton_A_35710_CDS 102 166 102 166 PF13499.6 EF-hand_7 Domain 1 71 71 54.5 1.2e-14 1 CL0220
Cotton_A_18796_CDS 69 133 57 135 PF05004.13 IFRD Family 110 180 306 28.7 7e-07 1 CL0020
Cotton_A_16383_CDS 12 48 12 48 PF08071.12 RS4NT Domain 1 37 37 68.1 4.9e-19 1 No_clan
Cotton_A_16383_CDS 56 99 51 99 PF01479.25 S4 Domain 6 48 48 27.8 1.5e-06 1 CL0492
Cotton_A_16383_CDS 104 178 104 178 PF00900.20 Ribosomal_S4e Family 1 75 75 116.6 3.3e-34 1 CL0021
Cotton_A_16383_CDS 186 219 186 220 PF00467.29 KOW Family 1 31 32 27.0 2.9e-06 1 CL0107
Cotton_A_16383_CDS 221 267 221 268 PF16121.5 40S_S4_C Family 1 47 48 91.8 1.5e-26 1 No_clan
Cotton_A_12916_CDS 96 492 96 497 PF00854.21 PTR2 Family 1 362 395 402.8 1.4e-120 1 CL0015
Cotton_A_18536_CDS 36 330 36 332 PF16363.5 GDP_Man_Dehyd Domain 1 330 332 186.0 1.1e-54 1 CL0063
Cotton_A_14134_CDS 55 181 53 181 PF00237.19 Ribosomal_L22 Domain 10 103 103 124.6 1.6e-36 1 No_clan
Cotton_A_20145_CDS 17 60 17 65 PF02892.15 zf-BED Domain 1 41 44 33.6 2.9e-08 1 CL0361
Cotton_A_20145_CDS 420 519 420 519 PF14372.6 DUF4413 Family 1 100 100 117.9 2.1e-34 1 No_clan
Cotton_A_20145_CDS 567 649 567 649 PF05699.14 Dimer_Tnp_hAT Domain 1 86 86 94.0 3.6e-27 1 No_clan
Cotton_A_21598_CDS 66 653 32 662 PF03999.12 MAP65_ASE1 Family 16 590 598 376.4 2.8e-112 1 No_clan
Cotton_A_02418_CDS 82 219 82 221 PF00885.19 DMRL_synthase Domain 1 139 141 173.5 2.1e-51 1 No_clan
Cotton_A_03504_CDS 93 182 88 184 PF00153.27 Mito_carr Family 9 95 97 86.7 7.7e-25 1 No_clan
Cotton_A_03504_CDS 186 273 185 275 PF00153.27 Mito_carr Family 2 95 97 71.6 3.8e-20 1 No_clan
Cotton_A_03504_CDS 278 348 275 352 PF00153.27 Mito_carr Family 4 79 97 53.5 1.7e-14 1 No_clan
Cotton_A_25175_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 49.4 3.9e-13 1 CL0123
Cotton_A_25175_CDS 67 111 67 112 PF00249.31 Myb_DNA-binding Domain 1 45 46 53.4 2.2e-14 1 CL0123
Cotton_A_21251_CDS 706 749 705 749 PF11331.8 zinc_ribbon_12 Family 2 45 45 67.5 6.2e-19 1 CL0167
Cotton_A_36064_CDS 122 410 122 411 PF08392.12 FAE1_CUT1_RppA Family 1 289 290 476.8 2.2e-143 1 CL0046
Cotton_A_36064_CDS 428 508 425 509 PF08541.10 ACP_syn_III_C Domain 12 89 90 42.9 4.1e-11 1 CL0046
Cotton_A_26829_CDS 1 128 1 128 PF01092.19 Ribosomal_S6e Family 1 125 125 190.1 1.2e-56 1 No_clan
Cotton_A_33504_CDS 33 65 31 65 PF06376.12 AGP Family 1 36 36 64.6 5.2e-18 1 No_clan
Cotton_A_04707_CDS 1 231 1 231 PF01946.17 Thi4 Family 4 235 235 381.7 9.6e-115 1 CL0063
Cotton_A_04567_CDS 136 211 136 217 PF13417.6 GST_N_3 Domain 1 72 75 65.2 5.2e-18 1 CL0172
Cotton_A_04567_CDS 257 331 257 334 PF13417.6 GST_N_3 Domain 1 72 75 28.4 1.6e-06 1 CL0172
Cotton_A_24191_CDS 37 497 37 502 PF00067.22 p450 Domain 1 457 463 331.2 9.6e-99 1 No_clan
Cotton_A_37901_CDS 32 203 25 204 PF01105.24 EMP24_GP25L Domain 10 181 182 112.5 2.1e-32 1 CL0521
Cotton_A_09691_CDS 16 151 16 151 PF00237.19 Ribosomal_L22 Domain 1 103 103 143.5 2.2e-42 1 No_clan
Cotton_A_14913_CDS 88 131 88 134 PF10693.9 DUF2499 Family 1 44 89 60.5 1.4e-16 1 No_clan
Cotton_A_01461_CDS 197 248 197 248 PF00249.31 Myb_DNA-binding Domain 1 46 46 25.1 1.5e-05 1 CL0123
Cotton_A_27512_CDS 152 239 152 240 PF03088.16 Str_synth Family 1 88 89 82.6 1.7e-23 1 CL0186
Cotton_A_23390_CDS 51 89 50 90 PF08263.12 LRRNT_2 Family 2 40 41 44.8 1.1e-11 1 No_clan
Cotton_A_23390_CDS 214 274 214 274 PF13855.6 LRR_8 Repeat 1 61 61 29.1 6.1e-07 1 CL0022
Cotton_A_35116_CDS 1 154 1 154 PF00407.19 Bet_v_1 Domain 1 151 151 85.2 4.2e-24 1 CL0209
Cotton_A_22811_CDS 200 229 200 230 PF01535.20 PPR Family 1 30 31 20.0 0.00056 1 CL0020
Cotton_A_22811_CDS 233 277 232 281 PF13041.6 PPR_2 Repeat 2 46 50 49.8 2.8e-13 1 CL0020
Cotton_A_22811_CDS 303 349 302 350 PF13041.6 PPR_2 Repeat 2 48 50 50.1 2.3e-13 1 CL0020
Cotton_A_22811_CDS 411 437 408 437 PF01535.20 PPR Family 5 31 31 14.7 0.027 1 CL0020
Cotton_A_22811_CDS 471 501 470 503 PF12854.7 PPR_1 Repeat 2 32 34 44.4 9.7e-12 1 CL0020
Cotton_A_22811_CDS 509 556 509 558 PF13041.6 PPR_2 Repeat 1 48 50 60.9 9.6e-17 1 CL0020
Cotton_A_22811_CDS 579 622 579 623 PF13041.6 PPR_2 Repeat 1 44 50 42.1 7.4e-11 1 CL0020
Cotton_A_40121_CDS 43 61 39 64 PF13202.6 EF-hand_5 Domain 5 23 25 25.8 4.9e-06 1 CL0220
Cotton_A_20326_CDS 17 330 17 332 PF00332.18 Glyco_hydro_17 Domain 1 310 313 269.8 3.7e-80 1 CL0058
Cotton_A_09040_CDS 333 613 332 615 PF03016.15 Exostosin Family 2 298 300 227.4 2.2e-67 1 No_clan
Cotton_A_36605_CDS 28 108 27 109 PF00106.25 adh_short Domain 6 84 195 37.1 2.2e-09 1 CL0063
Cotton_A_06040_CDS 262 321 262 322 PF00847.20 AP2 Domain 1 53 54 44.3 1.6e-11 1 CL0081
Cotton_A_06040_CDS 364 415 364 416 PF00847.20 AP2 Domain 1 53 54 38.2 1.3e-09 1 CL0081
Cotton_A_37450_CDS 67 137 67 138 PF04564.15 U-box Domain 1 71 73 53.9 1.5e-14 1 CL0229
Cotton_A_04720_CDS 51 162 51 162 PF00954.20 S_locus_glycop Domain 1 111 111 101.0 5.1e-29 1 No_clan
Cotton_A_04720_CDS 184 254 184 254 PF08276.11 PAN_2 Domain 1 67 67 69.4 2e-19 1 CL0168
Cotton_A_08267_CDS 18 82 18 87 PF00076.22 RRM_1 Domain 1 63 70 50.7 1.1e-13 1 CL0221
Cotton_A_08267_CDS 106 167 106 175 PF00076.22 RRM_1 Domain 1 62 70 63.9 9.1e-18 1 CL0221
Cotton_A_08267_CDS 353 423 353 423 PF00076.22 RRM_1 Domain 1 70 70 59.4 2.2e-16 1 CL0221
Cotton_A_25392_CDS 238 343 236 344 PF01399.27 PCI Domain 3 104 105 45.1 1.1e-11 1 CL0123
Cotton_A_11681_CDS 45 327 42 327 PF00069.25 Pkinase Domain 5 264 264 237.2 1.9e-70 1 CL0016
Cotton_A_14182_CDS 53 441 52 450 PF00083.24 Sugar_tr Family 2 408 452 262.3 8e-78 1 CL0015
Cotton_A_27945_CDS 87 416 84 416 PF00456.21 Transketolase_N Domain 4 334 334 504.7 9.5e-152 1 CL0254
Cotton_A_27945_CDS 434 604 432 605 PF02779.24 Transket_pyr Domain 4 176 178 150.1 5e-44 1 CL0254
Cotton_A_27945_CDS 629 735 624 735 PF02780.20 Transketolase_C Domain 9 124 124 43.0 3.6e-11 1 CL0591
Cotton_A_16610_CDS 1 262 1 262 PF00251.20 Glyco_hydro_32N Domain 58 305 305 239.4 6.6e-71 1 CL0143
Cotton_A_16610_CDS 265 457 265 457 PF08244.12 Glyco_hydro_32C Domain 1 158 158 97.1 1e-27 1 CL0004
Cotton_A_16643_CDS 124 161 123 161 PF00400.32 WD40 Repeat 3 38 38 13.5 0.1 1 CL0186
Cotton_A_16643_CDS 239 275 238 275 PF00400.32 WD40 Repeat 2 38 38 22.0 0.00021 1 CL0186
Cotton_A_16643_CDS 332 363 327 364 PF00400.32 WD40 Repeat 5 37 38 16.9 0.0085 1 CL0186
Cotton_A_16643_CDS 371 415 370 415 PF00400.32 WD40 Repeat 2 38 38 26.0 1.2e-05 1 CL0186
Cotton_A_17325_CDS 33 146 32 148 PF07732.15 Cu-oxidase_3 Domain 2 117 119 120.7 3.3e-35 1 CL0026
Cotton_A_17325_CDS 159 295 158 296 PF00394.22 Cu-oxidase Domain 2 158 159 139.9 7.5e-41 1 CL0026
Cotton_A_17325_CDS 377 513 376 516 PF07731.14 Cu-oxidase_2 Domain 2 134 137 94.4 4.6e-27 1 CL0026
Cotton_A_16652_CDS 331 374 327 376 PF00170.21 bZIP_1 Family 5 48 64 49.0 4.9e-13 1 CL0018
Cotton_A_12178_CDS 132 260 130 260 PF04116.13 FA_hydroxylase Family 3 133 133 69.5 3.4e-19 1 No_clan
Cotton_A_19046_CDS 75 160 75 174 PF01453.24 B_lectin Domain 1 90 105 61.1 1.2e-16 1 No_clan
Cotton_A_19046_CDS 247 315 218 317 PF00954.20 S_locus_glycop Domain 43 109 111 32.4 1.1e-07 1 No_clan
Cotton_A_19046_CDS 502 710 501 769 PF07714.17 Pkinase_Tyr Domain 3 213 259 156.9 5.8e-46 1 CL0016
Cotton_A_02973_CDS 317 331 316 332 PF13516.6 LRR_6 Repeat 2 16 24 9.1 1.4 1 CL0022
Cotton_A_02973_CDS 383 403 381 403 PF13516.6 LRR_6 Repeat 3 23 24 18.1 0.0019 1 CL0022
Cotton_A_02973_CDS 413 435 413 436 PF13516.6 LRR_6 Repeat 1 23 24 12.0 0.17 1 CL0022
Cotton_A_01011_CDS 383 513 382 519 PF02732.15 ERCC4 Domain 2 150 156 65.5 6.1e-18 1 CL0236
Cotton_A_35855_CDS 177 290 177 293 PF13474.6 SnoaL_3 Domain 1 119 121 74.3 9.4e-21 1 CL0051
Cotton_A_27721_CDS 125 168 124 168 PF13639.6 zf-RING_2 Domain 2 44 44 48.6 7.7e-13 1 CL0229
Cotton_A_24613_CDS 834 1003 834 1003 PF11865.8 DUF3385 Family 1 161 161 179.2 5.2e-53 1 CL0020
Cotton_A_24613_CDS 1513 1624 1513 1630 PF02259.23 FAT Family 1 95 346 108.0 5.9e-31 1 CL0020
Cotton_A_34580_CDS 95 418 95 418 PF00069.25 Pkinase Domain 1 264 264 162.5 1.2e-47 1 CL0016
Cotton_A_23156_CDS 57 99 57 100 PF06203.14 CCT Motif 1 43 44 54.7 7.8e-15 1 CL0281
Cotton_A_04315_CDS 81 146 81 148 PF16209.5 PhoLip_ATPase_N Family 1 65 67 80.2 6.3e-23 1 No_clan
Cotton_A_04315_CDS 178 425 175 428 PF00122.20 E1-E2_ATPase Family 4 169 181 37.6 1.5e-09 1 No_clan
Cotton_A_04315_CDS 585 660 551 664 PF13246.6 Cation_ATPase Family 21 85 91 33.2 4e-08 1 CL0137
Cotton_A_04315_CDS 695 779 583 806 PF00702.26 Hydrolase Domain 73 151 210 29.3 9.3e-07 1 CL0137
Cotton_A_04315_CDS 951 1004 951 1012 PF16212.5 PhoLip_ATPase_C Family 1 53 249 79.3 3.6e-22 1 No_clan
Cotton_A_40372_CDS 220 247 220 247 PF02985.22 HEAT Repeat 1 28 31 18.0 0.0024 1 CL0020
Cotton_A_35228_CDS 153 202 151 202 PF00847.20 AP2 Domain 3 54 54 53.0 3e-14 1 CL0081
Cotton_A_07554_CDS 135 311 135 313 PF00270.29 DEAD Domain 1 174 176 155.4 1.2e-45 1 CL0023
Cotton_A_07554_CDS 358 456 351 456 PF00271.31 Helicase_C Family 9 111 111 89.1 2.2e-25 1 CL0023
Cotton_A_07554_CDS 545 641 545 641 PF08152.12 GUCT Domain 1 96 96 93.6 6.8e-27 1 CL0221
Cotton_A_35085_CDS 8 30 8 30 PF10584.9 Proteasome_A_N Domain 1 23 23 50.4 1.3e-13 1 CL0052
Cotton_A_35085_CDS 31 223 31 225 PF00227.26 Proteasome Domain 1 188 190 175.4 8.5e-52 1 CL0052
Cotton_A_32108_CDS 32 369 31 458 PF01156.19 IU_nuc_hydro Domain 2 268 305 127.2 9.8e-37 1 No_clan
Cotton_A_32108_CDS 502 841 502 842 PF01156.19 IU_nuc_hydro Domain 1 304 305 123.0 1.8e-35 1 No_clan
Cotton_A_01441_CDS 25 63 24 64 PF08263.12 LRRNT_2 Family 2 40 41 32.3 9.3e-08 1 No_clan
Cotton_A_01441_CDS 699 916 697 943 PF00069.25 Pkinase Domain 3 198 264 130.5 7.2e-38 1 CL0016
Cotton_A_31990_CDS 10 65 10 66 PF00412.22 LIM Domain 1 57 58 45.6 6.1e-12 1 CL0167
Cotton_A_31990_CDS 103 158 103 159 PF00412.22 LIM Domain 1 57 58 43.0 3.8e-11 1 CL0167
Cotton_A_06888_CDS 10 95 6 136 PF18052.1 Rx_N Domain 2 84 93 77.6 6.4e-22 1 No_clan
Cotton_A_06888_CDS 176 411 170 413 PF00931.22 NB-ARC Domain 5 251 252 174.2 2.8e-51 1 CL0023
Cotton_A_14722_CDS 33 68 29 68 PF08263.12 LRRNT_2 Family 5 41 41 42.5 5.9e-11 1 No_clan
Cotton_A_14722_CDS 163 221 162 222 PF13855.6 LRR_8 Repeat 2 60 61 31.3 1.2e-07 1 CL0022
Cotton_A_14722_CDS 256 278 256 278 PF00560.33 LRR_1 Repeat 1 23 23 13.5 0.081 1 CL0022
Cotton_A_14722_CDS 420 437 419 437 PF13516.6 LRR_6 Repeat 2 18 24 9.6 0.98 1 CL0022
Cotton_A_14722_CDS 591 606 590 608 PF13516.6 LRR_6 Repeat 2 17 24 9.1 1.5 1 CL0022
Cotton_A_14722_CDS 665 687 665 687 PF00560.33 LRR_1 Repeat 1 23 23 10.3 0.89 1 CL0022
Cotton_A_14722_CDS 855 1053 852 1122 PF00069.25 Pkinase Domain 4 198 264 149.9 8.7e-44 1 CL0016
Cotton_A_38946_CDS 50 105 46 109 PF00411.19 Ribosomal_S11 Family 58 105 110 53.4 2.8e-14 1 CL0267
Cotton_A_04860_CDS 137 376 136 377 PF05637.12 Glyco_transf_34 Family 2 238 239 247.0 2.1e-73 1 CL0110
Cotton_A_05874_CDS 10 315 8 316 PF00294.24 PfkB Family 3 301 302 267.3 1.7e-79 1 CL0118
Cotton_A_25015_CDS 100 212 100 212 PF01661.21 Macro Domain 1 118 118 91.7 3.2e-26 1 CL0223
Cotton_A_25015_CDS 406 537 406 539 PF13716.6 CRAL_TRIO_2 Domain 1 136 138 104.8 4e-30 1 CL0512
Cotton_A_11084_CDS 214 267 214 267 PF11250.8 FAF Family 1 54 54 70.0 1.5e-19 1 No_clan
Cotton_A_14665_CDS 6 206 5 210 PF06792.11 UPF0261 Family 2 185 404 180.4 5.2e-53 1 No_clan
Cotton_A_14665_CDS 219 354 215 355 PF06792.11 UPF0261 Family 269 403 404 147.1 6.9e-43 1 No_clan
Cotton_A_14888_CDS 11 95 10 96 PF05922.16 Inhibitor_I9 Domain 2 81 82 48.2 1.3e-12 1 CL0570
Cotton_A_14888_CDS 119 554 119 579 PF00082.22 Peptidase_S8 Domain 1 284 298 171.1 3.3e-50 1 No_clan
Cotton_A_14888_CDS 631 735 631 736 PF17766.1 fn3_6 Domain 1 98 99 93.2 9e-27 1 CL0159
Cotton_A_12888_CDS 29 286 28 287 PF00139.19 Lectin_legB Domain 2 248 249 258.5 6e-77 1 CL0004
Cotton_A_12888_CDS 353 620 353 623 PF00069.25 Pkinase Domain 1 259 264 159.8 8.3e-47 1 CL0016
Cotton_A_08927_CDS 41 210 40 210 PF00582.26 Usp Domain 3 141 141 93.1 2.2e-26 1 CL0039
Cotton_A_33458_CDS 20 129 19 130 PF00072.24 Response_reg Domain 2 111 112 75.7 3e-21 1 CL0304
Cotton_A_06911_CDS 2 161 2 164 PF09767.9 DUF2053 Family 1 157 160 191.9 7.9e-57 1 No_clan
Cotton_A_03782_CDS 10 126 3 132 PF00931.22 NB-ARC Domain 87 209 252 79.0 3.1e-22 1 CL0023
Cotton_A_10503_CDS 23 109 11 110 PF02519.14 Auxin_inducible Family 8 87 90 74.5 5.7e-21 1 No_clan
Cotton_A_27633_CDS 388 503 384 504 PF04677.15 CwfJ_C_1 Family 6 121 122 127.2 2.9e-37 1 CL0265
Cotton_A_27633_CDS 524 606 513 608 PF04676.14 CwfJ_C_2 Family 12 97 99 67.7 1.3e-18 1 No_clan
Cotton_A_14406_CDS 36 85 35 86 PF00847.20 AP2 Domain 2 53 54 44.5 1.3e-11 1 CL0081
Cotton_A_07864_CDS 46 326 38 360 PF00150.18 Cellulase Domain 10 251 281 44.1 1.6e-11 1 CL0058
Cotton_A_24093_CDS 255 356 254 358 PF01399.27 PCI Domain 2 103 105 67.9 9e-19 1 CL0123
Cotton_A_23581_CDS 49 142 49 142 PF01190.17 Pollen_Ole_e_I Family 1 99 99 69.6 2.4e-19 1 CL0287
Cotton_A_13507_CDS 19 118 18 119 PF03227.16 GILT Family 2 105 106 80.5 9.3e-23 1 CL0172
Cotton_A_12905_CDS 52 155 52 155 PF00011.21 HSP20 Family 1 102 102 113.3 5e-33 1 CL0190
Cotton_A_06428_CDS 123 240 122 240 PF13911.6 AhpC-TSA_2 Domain 2 113 113 77.9 6e-22 1 CL0172
Cotton_A_19991_CDS 3 213 3 214 PF00091.25 Tubulin Domain 1 196 197 226.9 2.5e-67 1 CL0566
Cotton_A_19991_CDS 263 392 263 393 PF03953.17 Tubulin_C Domain 1 125 126 167.4 1.5e-49 1 CL0442
Cotton_A_32061_CDS 30 94 29 94 PF00808.23 CBFD_NFYB_HMF Domain 2 65 65 95.9 1.3e-27 1 CL0012
Cotton_A_06899_CDS 373 647 369 648 PF07714.17 Pkinase_Tyr Domain 6 258 259 144.1 4.6e-42 1 CL0016
Cotton_A_10129_CDS 234 328 234 329 PF00565.17 SNase Domain 1 107 108 88.5 3.8e-25 1 CL0049
Cotton_A_10663_CDS 128 391 123 392 PF00664.23 ABC_membrane Family 6 273 274 60.6 1.8e-16 1 CL0241
Cotton_A_10663_CDS 456 590 456 591 PF00005.27 ABC_tran Domain 1 136 137 65.1 9e-18 1 CL0023
Cotton_A_10663_CDS 787 992 758 1020 PF00664.23 ABC_membrane Family 43 248 274 90.7 1.2e-25 1 CL0241
Cotton_A_10663_CDS 1084 1230 1083 1231 PF00005.27 ABC_tran Domain 2 136 137 95.6 3.4e-27 1 CL0023
Cotton_A_16780_CDS 16 270 15 270 PF00069.25 Pkinase Domain 2 264 264 219.8 4.1e-65 1 CL0016
Cotton_A_16095_CDS 219 300 218 309 PF00355.26 Rieske Domain 2 84 89 77.1 7.6e-22 1 CL0516
Cotton_A_10537_CDS 16 234 13 234 PF00230.20 MIP Family 4 227 227 251.0 1.1e-74 1 No_clan
Cotton_A_07298_CDS 95 224 86 225 PF00782.20 DSPc Domain 11 132 133 47.6 1.4e-12 1 CL0031
Cotton_A_07298_CDS 299 492 299 492 PF01331.19 mRNA_cap_enzyme Domain 1 195 195 232.0 5.3e-69 1 CL0078
Cotton_A_07298_CDS 496 590 496 591 PF03919.15 mRNA_cap_C Domain 1 107 108 62.1 6.7e-17 1 CL0021
Cotton_A_14663_CDS 53 78 52 79 PF01535.20 PPR Family 4 29 31 14.2 0.04 1 CL0020
Cotton_A_14663_CDS 81 106 81 109 PF01535.20 PPR Family 1 26 31 22.3 0.0001 1 CL0020
Cotton_A_14663_CDS 155 178 155 182 PF01535.20 PPR Family 4 27 31 12.0 0.2 1 CL0020
Cotton_A_14663_CDS 180 228 180 229 PF13041.6 PPR_2 Repeat 1 49 50 35.8 6.9e-09 1 CL0020
Cotton_A_14663_CDS 256 281 253 283 PF01535.20 PPR Family 4 29 31 11.7 0.25 1 CL0020
Cotton_A_14663_CDS 282 328 281 329 PF13041.6 PPR_2 Repeat 2 48 50 31.6 1.3e-07 1 CL0020
Cotton_A_14663_CDS 357 382 354 384 PF01535.20 PPR Family 4 29 31 14.5 0.032 1 CL0020
Cotton_A_14663_CDS 383 432 374 432 PF13812.6 PPR_3 Repeat 14 63 63 17.6 0.0031 1 CL0020
Cotton_A_14663_CDS 458 482 458 485 PF01535.20 PPR Family 4 28 31 15.3 0.017 1 CL0020
Cotton_A_14663_CDS 484 531 483 532 PF13041.6 PPR_2 Repeat 2 49 50 38.4 1.1e-09 1 CL0020
Cotton_A_14663_CDS 558 582 557 585 PF01535.20 PPR Family 2 26 31 21.6 0.00018 1 CL0020
Cotton_A_14663_CDS 627 653 624 653 PF01535.20 PPR Family 5 31 31 12.9 0.1 1 CL0020
Cotton_A_28277_CDS 46 123 46 129 PF01988.19 VIT1 Family 1 79 215 92.5 3.3e-26 1 No_clan
Cotton_A_28277_CDS 125 212 116 213 PF01988.19 VIT1 Family 127 214 215 65.1 7.7e-18 1 No_clan
Cotton_A_11551_CDS 277 391 256 438 PF00201.18 UDPGT Family 277 382 499 68.3 5.7e-19 1 CL0113
Cotton_A_09059_CDS 399 441 399 441 PF05182.13 Fip1 Motif 1 43 43 73.3 7.7e-21 1 No_clan
Cotton_A_27680_CDS 8 36 7 37 PF01535.20 PPR Family 2 30 31 12.1 0.19 1 CL0020
Cotton_A_27680_CDS 107 154 106 155 PF13041.6 PPR_2 Repeat 2 49 50 33.6 3.3e-08 1 CL0020
Cotton_A_27680_CDS 181 201 181 208 PF01535.20 PPR Family 4 24 31 15.0 0.021 1 CL0020
Cotton_A_27680_CDS 206 255 206 255 PF13041.6 PPR_2 Repeat 1 50 50 43.3 3e-11 1 CL0020
Cotton_A_27680_CDS 382 405 382 408 PF01535.20 PPR Family 4 27 31 14.2 0.038 1 CL0020
Cotton_A_27680_CDS 410 438 410 439 PF01535.20 PPR Family 1 29 31 20.5 0.00038 1 CL0020
Cotton_A_27680_CDS 507 555 507 555 PF13041.6 PPR_2 Repeat 1 49 50 40.4 2.5e-10 1 CL0020
Cotton_A_27680_CDS 608 656 608 657 PF13041.6 PPR_2 Repeat 1 49 50 40.7 2e-10 1 CL0020
Cotton_A_27680_CDS 684 707 682 710 PF01535.20 PPR Family 3 26 31 13.5 0.065 1 CL0020
Cotton_A_24199_CDS 41 341 40 343 PF00459.25 Inositol_P Family 2 270 272 204.4 2.3e-60 1 CL0171
Cotton_A_12426_CDS 112 255 112 255 PF00475.18 IGPD Family 1 144 144 214.3 8e-64 1 CL0329
Cotton_A_02161_CDS 24 456 24 457 PF01490.18 Aa_trans Family 1 408 409 319.0 3.7e-95 1 CL0062
Cotton_A_05111_CDS 42 86 36 90 PF07732.15 Cu-oxidase_3 Domain 7 58 119 40.7 2e-10 1 CL0026
Cotton_A_35377_CDS 7 136 2 136 PF01397.21 Terpene_synth Domain 52 192 192 128.9 1.8e-37 1 No_clan
Cotton_A_35377_CDS 167 230 167 230 PF03936.16 Terpene_synth_C Domain 1 59 267 52.2 5.4e-14 1 CL0613
Cotton_A_22601_CDS 8 97 5 120 PF18052.1 Rx_N Domain 4 89 93 52.9 3.2e-14 1 No_clan
Cotton_A_22601_CDS 163 388 157 409 PF00931.22 NB-ARC Domain 7 223 252 152.3 1.3e-44 1 CL0023
Cotton_A_01074_CDS 16 178 16 179 PF04707.14 PRELI Family 1 156 157 169.1 6.3e-50 1 CL0209
Cotton_A_30013_CDS 204 251 203 252 PF13041.6 PPR_2 Repeat 2 49 50 34.0 2.5e-08 1 CL0020
Cotton_A_30013_CDS 305 353 305 354 PF13041.6 PPR_2 Repeat 1 49 50 53.6 1.9e-14 1 CL0020
Cotton_A_30013_CDS 406 454 406 455 PF13041.6 PPR_2 Repeat 1 49 50 40.3 2.7e-10 1 CL0020
Cotton_A_30013_CDS 548 575 547 576 PF01535.20 PPR Family 3 30 31 11.1 0.39 1 CL0020
Cotton_A_13173_CDS 292 311 292 314 PF02493.20 MORN Repeat 1 20 23 19.5 0.00062 1 CL0251
Cotton_A_13173_CDS 315 337 315 337 PF02493.20 MORN Repeat 1 23 23 27.6 1.6e-06 1 CL0251
Cotton_A_13173_CDS 338 360 338 360 PF02493.20 MORN Repeat 1 23 23 25.9 5.6e-06 1 CL0251
Cotton_A_13173_CDS 361 382 361 383 PF02493.20 MORN Repeat 1 22 23 24.4 1.7e-05 1 CL0251
Cotton_A_13173_CDS 384 405 384 406 PF02493.20 MORN Repeat 1 22 23 25.2 9.9e-06 1 CL0251
Cotton_A_13173_CDS 407 428 407 429 PF02493.20 MORN Repeat 1 22 23 21.6 0.00014 1 CL0251
Cotton_A_13173_CDS 430 451 430 452 PF02493.20 MORN Repeat 1 22 23 26.2 4.5e-06 1 CL0251
Cotton_A_03767_CDS 28 135 28 135 PF04398.12 DUF538 Family 1 112 112 97.0 8.6e-28 1 No_clan
Cotton_A_08815_CDS 65 112 64 112 PF17181.4 EPF Family 2 53 53 54.4 9e-15 1 No_clan
Cotton_A_13224_CDS 22 51 21 51 PF04438.16 zf-HIT Domain 2 30 30 40.8 1.5e-10 1 CL0175
Cotton_A_13224_CDS 198 319 195 326 PF04925.15 SHQ1 Family 18 134 176 31.7 1e-07 1 No_clan
Cotton_A_00189_CDS 1 131 1 131 PF00223.19 PsaA_PsaB Family 592 718 718 200.4 4.5e-59 1 No_clan
Cotton_A_03890_CDS 91 485 91 485 PF01979.20 Amidohydro_1 Domain 1 344 344 95.5 3.9e-27 1 CL0034
Cotton_A_19456_CDS 31 194 31 195 PF13883.6 Pyrid_oxidase_2 Domain 1 169 170 174.1 2.4e-51 1 CL0336
Cotton_A_21875_CDS 21 136 21 137 PF15699.5 NPR1_interact Family 1 108 109 79.1 3.4e-22 1 No_clan
Cotton_A_00775_CDS 50 94 49 100 PF17780.1 OCRE Domain 2 46 52 47.1 1.7e-12 1 No_clan
Cotton_A_18886_CDS 49 147 48 147 PF00970.24 FAD_binding_6 Domain 2 99 99 110.5 4.2e-32 1 CL0076
Cotton_A_18886_CDS 157 263 157 265 PF00175.21 NAD_binding_1 Domain 1 107 109 102.8 1.5e-29 1 CL0091
Cotton_A_23772_CDS 44 80 42 80 PF00400.32 WD40 Repeat 3 38 38 28.7 1.6e-06 1 CL0186
Cotton_A_23772_CDS 86 123 85 123 PF00400.32 WD40 Repeat 2 38 38 21.6 0.00029 1 CL0186
Cotton_A_23772_CDS 128 166 127 166 PF00400.32 WD40 Repeat 2 38 38 21.5 0.00031 1 CL0186
Cotton_A_23772_CDS 182 207 171 207 PF00400.32 WD40 Repeat 13 38 38 16.9 0.0086 1 CL0186
Cotton_A_23772_CDS 212 249 211 249 PF00400.32 WD40 Repeat 2 38 38 27.1 5e-06 1 CL0186
Cotton_A_23772_CDS 258 299 257 299 PF00400.32 WD40 Repeat 2 38 38 26.0 1.1e-05 1 CL0186
Cotton_A_00758_CDS 134 537 133 538 PF00464.19 SHMT Domain 2 398 399 553.4 2.1e-166 1 CL0061
Cotton_A_26476_CDS 2 408 1 408 PF00063.21 Myosin_head Domain 261 677 677 434.2 7.9e-130 1 CL0023
Cotton_A_07197_CDS 19 77 17 77 PF00046.29 Homeodomain Domain 3 57 57 57.2 1.1e-15 1 CL0123
Cotton_A_01147_CDS 121 280 121 281 PF14543.6 TAXi_N Domain 1 177 178 93.7 1.5e-26 1 CL0129
Cotton_A_01147_CDS 306 453 305 456 PF14541.6 TAXi_C Domain 2 158 161 82.7 2.4e-23 1 CL0129
Cotton_A_27692_CDS 171 217 171 217 PF01344.25 Kelch_1 Repeat 1 46 46 32.2 5.8e-08 1 CL0186
Cotton_A_27692_CDS 219 265 219 266 PF01344.25 Kelch_1 Repeat 1 45 46 42.2 4.4e-11 1 CL0186
Cotton_A_07096_CDS 13 41 12 41 PF13405.6 EF-hand_6 Domain 2 31 31 30.3 2.2e-07 1 CL0220
Cotton_A_07096_CDS 82 144 81 145 PF13499.6 EF-hand_7 Domain 2 70 71 56.4 3.1e-15 1 CL0220
Cotton_A_32874_CDS 118 163 116 179 PF07939.11 DUF1685 Family 3 47 60 21.3 0.00016 1 No_clan
Cotton_A_36761_CDS 78 144 28 148 PF02519.14 Auxin_inducible Family 22 86 90 73.2 1.4e-20 1 No_clan
Cotton_A_27940_CDS 100 212 100 244 PF00856.28 SET Family 1 94 169 25.7 1.3e-05 1 No_clan
Cotton_A_22155_CDS 42 207 39 210 PF00270.29 DEAD Domain 4 174 176 71.1 9.5e-20 1 CL0023
Cotton_A_22155_CDS 246 345 243 347 PF00271.31 Helicase_C Family 4 109 111 35.0 1.4e-08 1 CL0023
Cotton_A_22155_CDS 407 459 387 459 PF16124.5 RecQ_Zn_bind Domain 19 66 66 31.6 2.1e-07 1 No_clan
Cotton_A_15789_CDS 33 124 16 124 PF14368.6 LTP_2 Family 8 97 97 52.0 5.6e-14 1 CL0482
Cotton_A_04496_CDS 47 110 46 112 PF10601.9 zf-LITAF-like Family 2 68 70 47.8 1.3e-12 1 No_clan
Cotton_A_20138_CDS 4 96 4 105 PF02362.21 B3 Family 1 91 101 43.5 2.3e-11 1 CL0405
Cotton_A_25839_CDS 12 473 7 473 PF02005.16 TRM Family 6 376 376 391.2 5.2e-117 1 CL0063
Cotton_A_35805_CDS 35 119 35 124 PF01190.17 Pollen_Ole_e_I Family 1 93 99 63.6 1.7e-17 1 CL0287
Cotton_A_11328_CDS 7 115 7 117 PF05564.12 Auxin_repressed Family 1 116 118 166.6 3e-49 1 No_clan
Cotton_A_28584_CDS 39 84 38 84 PF08263.12 LRRNT_2 Family 2 41 41 32.9 5.8e-08 1 No_clan
Cotton_A_28584_CDS 184 242 183 243 PF13855.6 LRR_8 Repeat 2 60 61 32.1 7.2e-08 1 CL0022
Cotton_A_28584_CDS 544 603 543 603 PF13855.6 LRR_8 Repeat 2 61 61 37.5 1.5e-09 1 CL0022
Cotton_A_28584_CDS 722 993 720 1006 PF00069.25 Pkinase Domain 3 259 264 163.3 7e-48 1 CL0016
Cotton_A_21321_CDS 15 121 15 124 PF00072.24 Response_reg Domain 1 108 112 49.4 4.3e-13 1 CL0304
Cotton_A_19136_CDS 10 70 10 70 PF13855.6 LRR_8 Repeat 1 61 61 33.2 3.2e-08 1 CL0022
Cotton_A_19136_CDS 178 199 178 200 PF00560.33 LRR_1 Repeat 1 22 23 9.7 1.4 1 CL0022
Cotton_A_19136_CDS 259 280 258 280 PF00560.33 LRR_1 Repeat 2 23 23 10.2 1 1 CL0022
Cotton_A_19136_CDS 311 366 307 366 PF13855.6 LRR_8 Repeat 6 61 61 33.3 2.9e-08 1 CL0022
Cotton_A_19136_CDS 451 510 450 510 PF13855.6 LRR_8 Repeat 2 61 61 43.8 1.6e-11 1 CL0022
Cotton_A_19136_CDS 624 788 620 799 PF00069.25 Pkinase Domain 5 166 264 110.3 1e-31 1 CL0016
Cotton_A_20976_CDS 26 573 25 575 PF03321.13 GH3 Family 2 525 527 678.4 7.7e-204 1 CL0378
Cotton_A_01479_CDS 274 343 273 344 PF04564.15 U-box Domain 2 71 73 69.8 1.6e-19 1 CL0229
Cotton_A_01479_CDS 408 444 408 445 PF00514.23 Arm Repeat 4 40 41 29.3 6.1e-07 1 CL0020
Cotton_A_24699_CDS 33 211 33 218 PF00067.22 p450 Domain 1 180 463 79.3 2.4e-22 1 No_clan
Cotton_A_24699_CDS 210 464 203 466 PF00067.22 p450 Domain 208 461 463 234.1 2.6e-69 1 No_clan
Cotton_A_07337_CDS 10 48 10 49 PF02736.19 Myosin_N Domain 1 39 40 36.8 2.5e-09 1 CL0010
Cotton_A_07337_CDS 64 591 64 603 PF00063.21 Myosin_head Domain 1 540 677 710.0 2.7e-213 1 CL0023
Cotton_A_37140_CDS 19 291 18 293 PF01263.20 Aldose_epim Family 2 299 301 215.3 1.2e-63 1 CL0103
Cotton_A_19225_CDS 65 112 64 113 PF13041.6 PPR_2 Repeat 2 49 50 42.0 7.7e-11 1 CL0020
Cotton_A_19225_CDS 140 160 140 164 PF01535.20 PPR Family 4 24 31 9.4 1.3 1 CL0020
Cotton_A_19225_CDS 168 198 168 198 PF01535.20 PPR Family 1 31 31 22.7 7.4e-05 1 CL0020
Cotton_A_19225_CDS 239 261 238 265 PF01535.20 PPR Family 2 24 31 13.7 0.057 1 CL0020
Cotton_A_19225_CDS 268 314 267 316 PF13041.6 PPR_2 Repeat 2 48 50 45.2 8e-12 1 CL0020
Cotton_A_19225_CDS 370 418 370 419 PF13041.6 PPR_2 Repeat 1 49 50 34.3 2.1e-08 1 CL0020
Cotton_A_19225_CDS 473 519 471 520 PF13041.6 PPR_2 Repeat 3 49 50 31.3 1.7e-07 1 CL0020
Cotton_A_24238_CDS 11 146 8 147 PF00080.20 Sod_Cu Domain 5 140 142 167.0 2.7e-49 1 No_clan
Cotton_A_33432_CDS 52 131 50 134 PF16203.5 ERCC3_RAD25_C Domain 36 114 247 110.9 5.7e-32 1 CL0023
Cotton_A_26451_CDS 2 95 2 103 PF06418.14 CTP_synth_N Domain 1 94 265 173.1 6.8e-51 1 CL0023
Cotton_A_06763_CDS 25 62 23 63 PF00643.24 zf-B_box Domain 4 41 42 32.1 9.3e-08 1 No_clan
Cotton_A_06763_CDS 61 106 59 106 PF00643.24 zf-B_box Domain 3 42 42 28.8 9.9e-07 1 No_clan
Cotton_A_06763_CDS 235 277 235 278 PF06203.14 CCT Motif 1 43 44 64.4 6.9e-18 1 CL0281
Cotton_A_14332_CDS 12 298 2 299 PF03140.15 DUF247 Family 124 396 397 197.9 3e-58 1 No_clan
Cotton_A_07207_CDS 7 147 7 148 PF00179.26 UQ_con Domain 1 139 140 159.8 3e-47 1 CL0208
Cotton_A_03848_CDS 117 251 117 251 PF00781.24 DAGK_cat Family 1 126 126 101.2 3e-29 1 CL0240
Cotton_A_10285_CDS 37 115 36 135 PF01370.21 Epimerase Family 152 231 241 37.6 1.6e-09 1 CL0063
Cotton_A_21671_CDS 28 578 27 581 PF03321.13 GH3 Family 2 524 527 681.1 1.2e-204 1 CL0378
Cotton_A_21032_CDS 23 64 22 65 PF08263.12 LRRNT_2 Family 2 40 41 35.2 1.1e-08 1 No_clan
Cotton_A_21032_CDS 147 168 146 168 PF00560.33 LRR_1 Repeat 2 23 23 10.2 0.96 1 CL0022
Cotton_A_21032_CDS 420 644 416 706 PF00069.25 Pkinase Domain 6 209 264 104.5 6.2e-30 1 CL0016
Cotton_A_35134_CDS 19 116 19 116 PF04749.17 PLAC8 Family 1 99 99 90.3 1.3e-25 1 No_clan
Cotton_A_11592_CDS 275 335 257 337 PF13855.6 LRR_8 Repeat 1 61 61 34.6 1.2e-08 1 CL0022
Cotton_A_11592_CDS 481 735 476 738 PF07714.17 Pkinase_Tyr Domain 7 256 259 67.4 1.2e-18 1 CL0016
Cotton_A_03278_CDS 41 95 41 95 PF01667.17 Ribosomal_S27e Family 1 55 55 91.8 1.5e-26 1 CL0167
Cotton_A_37941_CDS 148 371 145 385 PF00931.22 NB-ARC Domain 4 234 252 182.9 5.9e-54 1 CL0023
Cotton_A_37941_CDS 526 581 524 582 PF13855.6 LRR_8 Repeat 3 59 61 32.7 4.7e-08 1 CL0022
Cotton_A_01481_CDS 24 295 22 296 PF07714.17 Pkinase_Tyr Domain 3 258 259 211.8 1e-62 1 CL0016
Cotton_A_31700_CDS 41 62 40 62 PF00560.33 LRR_1 Repeat 2 23 23 13.7 0.073 1 CL0022
Cotton_A_31700_CDS 64 83 64 88 PF00560.33 LRR_1 Repeat 1 20 23 10.3 0.95 1 CL0022
Cotton_A_01892_CDS 1 284 1 284 PF00332.18 Glyco_hydro_17 Domain 30 313 313 344.8 5.5e-103 1 CL0058
Cotton_A_15934_CDS 71 139 71 140 PF00076.22 RRM_1 Domain 1 69 70 54.1 9.9e-15 1 CL0221
Cotton_A_15934_CDS 170 223 163 229 PF13865.6 FoP_duplication Family 8 61 81 30.1 5.1e-07 1 No_clan
Cotton_A_19395_CDS 693 840 673 841 PF05794.13 Tcp11 Family 13 147 442 100.8 9.5e-29 1 No_clan
Cotton_A_19395_CDS 860 1143 857 1162 PF05794.13 Tcp11 Family 143 390 442 112.6 2.4e-32 1 No_clan
Cotton_A_04673_CDS 9 88 9 101 PF08640.11 U3_assoc_6 Family 1 70 83 92.4 1.3e-26 1 No_clan
Cotton_A_12559_CDS 46 87 45 91 PF00314.17 Thaumatin Domain 2 42 214 27.4 2.3e-06 1 CL0293
Cotton_A_12559_CDS 89 216 87 216 PF00314.17 Thaumatin Domain 84 214 214 135.2 2.3e-39 1 CL0293
Cotton_A_28086_CDS 1 188 1 192 PF14009.6 DUF4228 Family 1 175 179 76.3 3.7e-21 1 No_clan
Cotton_A_36342_CDS 18 65 18 65 PF00249.31 Myb_DNA-binding Domain 1 46 46 62.0 4.3e-17 1 CL0123
Cotton_A_36342_CDS 71 115 71 116 PF00249.31 Myb_DNA-binding Domain 1 45 46 49.6 3.3e-13 1 CL0123
Cotton_A_34575_CDS 212 257 211 269 PF00403.26 HMA Domain 2 48 62 45.8 6.3e-12 1 No_clan
Cotton_A_03455_CDS 21 168 20 168 PF01161.20 PBP Domain 2 132 132 101.6 4e-29 1 No_clan
Cotton_A_04812_CDS 87 511 87 511 PF00026.23 Asp Family 1 315 315 442.0 1.3e-132 1 CL0129
Cotton_A_04812_CDS 321 354 321 354 PF03489.17 SapB_2 Family 1 34 34 47.1 1.8e-12 1 No_clan
Cotton_A_04812_CDS 385 421 384 421 PF05184.15 SapB_1 Domain 2 38 38 52.7 3e-14 1 No_clan
Cotton_A_07227_CDS 39 132 38 135 PF08241.12 Methyltransf_11 Domain 2 93 96 40.4 3.4e-10 1 CL0063
Cotton_A_02440_CDS 18 69 18 70 PF09713.10 A_thal_3526 Domain 1 52 53 91.7 2.5e-26 1 No_clan
Cotton_A_26718_CDS 1 59 1 59 PF04783.12 DUF630 Family 1 59 59 92.3 1.5e-26 1 No_clan
Cotton_A_26718_CDS 315 655 314 657 PF04782.12 DUF632 Family 2 308 310 369.9 1e-110 1 No_clan
Cotton_A_26350_CDS 57 95 56 96 PF00514.23 Arm Repeat 2 40 41 32.8 4.9e-08 1 CL0020
Cotton_A_26350_CDS 151 178 151 179 PF00514.23 Arm Repeat 13 40 41 25.2 1.2e-05 1 CL0020
Cotton_A_26350_CDS 184 220 181 221 PF00514.23 Arm Repeat 4 40 41 31.4 1.3e-07 1 CL0020
Cotton_A_17418_CDS 13 74 5 78 PF01429.19 MBD Domain 9 73 77 39.6 3.1e-10 1 CL0081
Cotton_A_28315_CDS 11 212 10 237 PF11107.8 FANCF Family 2 188 342 69.7 2.5e-19 1 No_clan
Cotton_A_24251_CDS 13 71 3 73 PF00501.28 AMP-binding Family 43 103 423 36.0 2.9e-09 1 CL0378
Cotton_A_34394_CDS 49 208 49 209 PF01554.18 MatE Family 1 160 161 90.6 7.8e-26 1 CL0222
Cotton_A_34394_CDS 270 433 270 433 PF01554.18 MatE Family 1 161 161 101.7 3.1e-29 1 CL0222
Cotton_A_33684_CDS 31 238 28 245 PF02259.23 FAT Family 123 335 346 173.3 7.6e-51 1 CL0020
Cotton_A_06226_CDS 34 71 31 71 PF08263.12 LRRNT_2 Family 4 41 41 42.9 4.5e-11 1 No_clan
Cotton_A_06226_CDS 246 315 245 385 PF00069.25 Pkinase Domain 140 207 264 35.7 5.9e-09 1 CL0016
Cotton_A_19192_CDS 61 346 37 358 PF08568.10 Kinetochor_Ybp2 Family 34 348 633 44.6 7.2e-12 1 No_clan
Cotton_A_19192_CDS 387 569 358 591 PF08568.10 Kinetochor_Ybp2 Family 437 614 633 78.9 2.9e-22 1 No_clan
Cotton_A_35679_CDS 15 137 15 143 PF04857.20 CAF1 Family 1 126 319 45.6 5.3e-12 1 CL0219
Cotton_A_35679_CDS 159 243 140 243 PF04857.20 CAF1 Family 210 319 319 28.7 7e-07 1 CL0219
Cotton_A_00055_CDS 116 265 112 265 PF00650.20 CRAL_TRIO Domain 5 159 159 131.4 2.4e-38 1 CL0512
Cotton_A_39203_CDS 26 66 25 66 PF08263.12 LRRNT_2 Family 2 41 41 36.5 4.5e-09 1 No_clan
Cotton_A_39203_CDS 117 130 116 133 PF13516.6 LRR_6 Repeat 2 15 24 10.5 0.53 1 CL0022
Cotton_A_39203_CDS 355 415 355 415 PF13855.6 LRR_8 Repeat 1 61 61 37.1 2e-09 1 CL0022
Cotton_A_39203_CDS 579 839 576 841 PF00069.25 Pkinase Domain 4 259 264 156.5 8.2e-46 1 CL0016
Cotton_A_35255_CDS 49 216 31 227 PF03587.14 EMG1 Family 11 174 194 190.2 2.9e-56 1 CL0098
Cotton_A_07779_CDS 191 228 188 236 PF00170.21 bZIP_1 Family 5 42 64 33.1 4.3e-08 1 CL0018
Cotton_A_07779_CDS 282 356 281 357 PF14144.6 DOG1 Family 2 76 77 105.0 1.8e-30 1 No_clan
Cotton_A_09420_CDS 194 269 194 270 PF08511.11 COQ9 Domain 1 76 77 93.1 6.7e-27 1 No_clan
Cotton_A_10911_CDS 73 345 72 348 PF03982.13 DAGAT Family 2 294 297 245.9 4.1e-73 1 CL0228
Cotton_A_23757_CDS 12 42 3 49 PF00646.33 F-box Domain 10 40 48 25.0 1.3e-05 1 CL0271
Cotton_A_23757_CDS 221 298 219 329 PF08268.12 FBA_3 Domain 3 84 128 33.9 2.6e-08 1 CL0162
Cotton_A_38465_CDS 81 215 79 217 PF01565.23 FAD_binding_4 Domain 3 136 139 88.7 2.8e-25 1 CL0077
Cotton_A_14331_CDS 6 306 1 308 PF03140.15 DUF247 Family 70 395 397 209.1 1.2e-61 1 No_clan
Cotton_A_09517_CDS 39 164 37 166 PF08240.12 ADH_N Domain 3 107 109 81.3 4.3e-23 1 CL0296
Cotton_A_09517_CDS 208 333 208 343 PF00107.26 ADH_zinc_N Family 1 120 130 86.2 1.7e-24 1 CL0063
Cotton_A_30334_CDS 25 122 23 122 PF14111.6 DUF4283 Domain 3 99 145 73.3 1.4e-20 1 No_clan
Cotton_A_13600_CDS 2 250 2 251 PF03194.15 LUC7 Family 1 250 251 287.7 8.2e-86 1 No_clan
Cotton_A_35416_CDS 86 168 83 169 PF03083.16 MtN3_slv Family 4 86 87 93.6 5.7e-27 1 CL0141
Cotton_A_39831_CDS 263 518 262 520 PF01803.16 LIM_bind Family 2 236 241 195.3 1.1e-57 1 No_clan
Cotton_A_06599_CDS 94 126 93 126 PF12854.7 PPR_1 Repeat 2 34 34 28.8 7.3e-07 1 CL0020
Cotton_A_06599_CDS 131 161 131 161 PF01535.20 PPR Family 1 31 31 35.5 6.1e-09 1 CL0020
Cotton_A_06599_CDS 230 277 229 278 PF13041.6 PPR_2 Repeat 2 49 50 36.6 3.7e-09 1 CL0020
Cotton_A_06599_CDS 304 329 303 331 PF01535.20 PPR Family 2 27 31 11.6 0.26 1 CL0020
Cotton_A_06599_CDS 374 399 371 399 PF01535.20 PPR Family 6 31 31 9.9 0.89 1 CL0020
Cotton_A_06599_CDS 403 527 403 527 PF14432.6 DYW_deaminase Family 1 127 127 137.1 2.9e-40 1 CL0109
Cotton_A_21424_CDS 72 128 71 129 PF02701.15 zf-Dof Family 2 58 59 110.5 3.2e-32 1 No_clan
Cotton_A_36459_CDS 231 256 231 257 PF00642.24 zf-CCCH Family 1 26 27 40.4 1.8e-10 1 CL0537
Cotton_A_05525_CDS 40 58 40 58 PF08137.12 DVL Family 1 19 19 41.6 8.1e-11 1 No_clan
Cotton_A_14960_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 48.7 6.2e-13 1 CL0123
Cotton_A_14960_CDS 67 112 67 112 PF00249.31 Myb_DNA-binding Domain 1 46 46 55.3 5.3e-15 1 CL0123
Cotton_A_34005_CDS 31 70 30 71 PF08263.12 LRRNT_2 Family 2 40 41 40.0 3.5e-10 1 No_clan
Cotton_A_34005_CDS 172 186 170 188 PF13516.6 LRR_6 Repeat 3 17 24 9.8 0.86 1 CL0022
Cotton_A_34005_CDS 221 233 218 235 PF13516.6 LRR_6 Repeat 4 16 24 11.4 0.26 1 CL0022
Cotton_A_17984_CDS 28 77 28 78 PF08100.11 Dimerisation Domain 1 50 51 42.7 4.1e-11 1 CL0123
Cotton_A_17984_CDS 129 335 129 335 PF00891.18 Methyltransf_2 Domain 1 210 210 235.2 4.5e-70 1 CL0063
Cotton_A_33618_CDS 10 57 10 57 PF00319.18 SRF-TF Domain 1 48 48 90.4 3.5e-26 1 No_clan
Cotton_A_33618_CDS 91 173 82 174 PF01486.17 K-box Family 10 92 93 88.2 3e-25 1 No_clan
Cotton_A_30502_CDS 69 399 69 408 PF00295.17 Glyco_hydro_28 Domain 1 323 325 342.8 1.7e-102 1 CL0268
Cotton_A_26586_CDS 4 129 1 129 PF00141.23 peroxidase Domain 118 229 229 106.1 2.1e-30 1 CL0617
Cotton_A_30274_CDS 5 180 5 181 PF14215.6 bHLH-MYC_N Family 1 174 175 112.9 2e-32 1 CL0161
Cotton_A_32192_CDS 30 114 30 114 PF14547.6 Hydrophob_seed Domain 1 85 85 92.3 1.6e-26 1 CL0482
Cotton_A_32545_CDS 76 121 73 122 PF00010.26 HLH Domain 4 52 53 26.2 5.9e-06 1 No_clan
Cotton_A_11444_CDS 21 83 21 85 PF01918.21 Alba Family 1 64 67 50.3 1.5e-13 1 CL0441
Cotton_A_05024_CDS 62 545 61 546 PF00982.21 Glyco_transf_20 Family 2 473 474 593.6 2.5e-178 1 CL0113
Cotton_A_05024_CDS 595 829 595 830 PF02358.16 Trehalose_PPase Family 1 232 233 231.2 8.9e-69 1 CL0137
Cotton_A_22463_CDS 1 45 1 49 PF01985.21 CRS1_YhbY Domain 31 75 84 42.8 4.5e-11 1 No_clan
Cotton_A_27813_CDS 6 163 5 165 PF13967.6 RSN1_TM Family 2 154 156 142.0 1.3e-41 1 No_clan
Cotton_A_27813_CDS 186 339 186 339 PF14703.6 PHM7_cyt Domain 1 176 176 88.8 4.7e-25 1 CL0221
Cotton_A_27813_CDS 399 589 396 590 PF02714.15 RSN1_7TM Family 78 273 274 162.1 1.6e-47 1 CL0416
Cotton_A_02965_CDS 52 308 52 308 PF00108.23 Thiolase_N Domain 1 260 260 261.3 8.4e-78 1 CL0046
Cotton_A_02965_CDS 317 439 315 439 PF02803.18 Thiolase_C Domain 3 123 123 162.2 3.7e-48 1 CL0046
Cotton_A_22298_CDS 93 202 90 203 PF07714.17 Pkinase_Tyr Domain 4 120 259 55.3 5.8e-15 1 CL0016
Cotton_A_24337_CDS 7 73 7 73 PF13499.6 EF-hand_7 Domain 1 71 71 56.8 2.2e-15 1 CL0220
Cotton_A_23177_CDS 83 341 83 341 PF00069.25 Pkinase Domain 1 264 264 245.1 8e-73 1 CL0016
Cotton_A_23177_CDS 389 449 388 450 PF13499.6 EF-hand_7 Domain 4 70 71 41.0 1.9e-10 1 CL0220
Cotton_A_23177_CDS 459 521 458 521 PF13499.6 EF-hand_7 Domain 2 71 71 56.6 2.7e-15 1 CL0220
Cotton_A_40279_CDS 95 258 95 259 PF14543.6 TAXi_N Domain 1 177 178 121.8 3.7e-35 1 CL0129
Cotton_A_40279_CDS 281 430 280 431 PF14541.6 TAXi_C Domain 2 160 161 107.8 4.6e-31 1 CL0129
Cotton_A_18684_CDS 137 155 137 155 PF00612.27 IQ Motif 3 21 21 20.2 0.00032 1 CL0220
Cotton_A_18684_CDS 161 175 158 177 PF00612.27 IQ Motif 5 19 21 13.0 0.067 1 CL0220
Cotton_A_03588_CDS 5 43 2 43 PF13855.6 LRR_8 Repeat 23 61 61 27.6 1.7e-06 1 CL0022
Cotton_A_03588_CDS 223 282 222 282 PF13855.6 LRR_8 Repeat 2 61 61 31.1 1.5e-07 1 CL0022
Cotton_A_03588_CDS 429 698 426 700 PF00069.25 Pkinase Domain 4 259 264 162.3 1.4e-47 1 CL0016
Cotton_A_23236_CDS 30 318 28 347 PF00150.18 Cellulase Domain 4 251 281 55.0 7.9e-15 1 CL0058
Cotton_A_01758_CDS 3 107 1 112 PF15375.6 DUF4602 Family 28 132 135 61.0 1.4e-16 1 No_clan
Cotton_A_16021_CDS 202 458 168 460 PF09402.10 MSC Domain 49 335 338 56.4 3.4e-15 1 No_clan
Cotton_A_16021_CDS 458 537 439 538 PF03141.16 Methyltransf_29 Family 113 198 506 104.5 5e-30 1 CL0063
Cotton_A_16021_CDS 675 721 659 721 PF03141.16 Methyltransf_29 Family 462 506 506 20.2 0.00018 1 CL0063
Cotton_A_22864_CDS 8 75 8 76 PF00076.22 RRM_1 Domain 1 69 70 51.9 5e-14 1 CL0221
Cotton_A_22864_CDS 112 178 112 181 PF00076.22 RRM_1 Domain 1 67 70 58.7 3.6e-16 1 CL0221
Cotton_A_11591_CDS 40 417 40 418 PF12819.7 Malectin_like Domain 1 335 336 158.8 1.9e-46 1 CL0202
Cotton_A_11591_CDS 541 804 536 807 PF07714.17 Pkinase_Tyr Domain 7 256 259 158.7 1.6e-46 1 CL0016
Cotton_A_27255_CDS 139 195 139 196 PF04844.13 Ovate Family 1 57 58 86.4 9.3e-25 1 No_clan
Cotton_A_15049_CDS 36 69 36 69 PF02375.17 JmjN Family 1 34 34 56.2 2.3e-15 1 CL0029
Cotton_A_15049_CDS 273 389 273 389 PF02373.22 JmjC Domain 1 114 114 153.9 2e-45 1 CL0029
Cotton_A_15049_CDS 496 546 496 548 PF02928.16 zf-C5HC2 Domain 1 52 54 47.0 2.4e-12 1 No_clan
Cotton_A_36306_CDS 4 51 4 53 PF13041.6 PPR_2 Repeat 1 48 50 39.3 5.4e-10 1 CL0020
Cotton_A_36306_CDS 80 104 80 105 PF01535.20 PPR Family 4 28 31 12.5 0.14 1 CL0020
Cotton_A_36306_CDS 110 138 110 138 PF01535.20 PPR Family 1 29 31 19.1 0.001 1 CL0020
Cotton_A_36306_CDS 141 186 138 188 PF13041.6 PPR_2 Repeat 4 48 50 43.6 2.4e-11 1 CL0020
Cotton_A_36306_CDS 243 267 243 273 PF01535.20 PPR Family 1 25 31 23.7 3.6e-05 1 CL0020
Cotton_A_36306_CDS 271 319 271 320 PF13041.6 PPR_2 Repeat 1 49 50 43.8 2.1e-11 1 CL0020
Cotton_A_36306_CDS 372 417 372 421 PF13041.6 PPR_2 Repeat 1 46 50 33.9 2.6e-08 1 CL0020
Cotton_A_36306_CDS 521 547 519 547 PF01535.20 PPR Family 5 31 31 10.9 0.44 1 CL0020
Cotton_A_13146_CDS 55 158 55 158 PF00011.21 HSP20 Family 1 102 102 110.9 2.7e-32 1 CL0190
Cotton_A_21890_CDS 13 280 12 300 PF01095.19 Pectinesterase Family 2 276 298 208.6 8e-62 1 CL0268
Cotton_A_18753_CDS 135 271 119 272 PF01018.22 GTP1_OBG Domain 36 154 155 66.1 2.5e-18 1 No_clan
Cotton_A_18753_CDS 275 402 275 402 PF01926.23 MMR_HSR1 Family 1 114 114 85.2 3.1e-24 1 CL0023
Cotton_A_17431_CDS 70 209 70 211 PF11317.8 DUF3119 Family 1 124 126 142.2 1e-41 1 No_clan
Cotton_A_17852_CDS 18 91 14 91 PF08293.11 MRP-S33 Family 6 88 88 59.9 2.2e-16 1 No_clan
Cotton_A_20430_CDS 1 118 1 119 PF00330.20 Aconitase Family 356 460 461 134.1 6.8e-39 1 No_clan
Cotton_A_20430_CDS 223 347 222 349 PF00694.19 Aconitase_C Domain 2 129 131 94.4 6.6e-27 1 CL0364
Cotton_A_28801_CDS 32 93 32 94 PF01176.19 eIF-1a Domain 1 63 64 75.4 2.3e-21 1 CL0021
Cotton_A_25086_CDS 61 85 60 86 PF13912.6 zf-C2H2_6 Domain 2 26 27 29.8 4.3e-07 1 CL0361
Cotton_A_11554_CDS 4 127 2 147 PF05804.12 KAP Family 294 414 708 22.0 4e-05 1 CL0020
Cotton_A_25889_CDS 23 93 5 97 PF02519.14 Auxin_inducible Family 19 86 90 78.2 3.9e-22 1 No_clan
Cotton_A_33175_CDS 87 195 87 196 PF10664.9 NdhM Family 1 106 107 151.4 8.4e-45 1 No_clan
Cotton_A_27124_CDS 45 296 18 309 PF05004.13 IFRD Family 37 292 306 147.3 5.1e-43 1 CL0020
Cotton_A_03787_CDS 33 139 32 140 PF13947.6 GUB_WAK_bind Domain 2 105 106 96.0 2.1e-27 1 No_clan
Cotton_A_03787_CDS 354 449 353 459 PF00069.25 Pkinase Domain 2 99 264 44.2 1.5e-11 1 CL0016
Cotton_A_03156_CDS 87 124 87 124 PF06596.11 PsbX Family 1 39 39 61.6 5.2e-17 1 No_clan
Cotton_A_06246_CDS 14 105 13 105 PF13650.6 Asp_protease_2 Domain 2 90 90 27.7 3.3e-06 1 CL0129
Cotton_A_00434_CDS 12 89 3 91 PF00232.18 Glyco_hydro_1 Domain 373 451 453 98.2 3.5e-28 1 CL0058
Cotton_A_34696_CDS 98 234 19 237 PF01086.17 Clathrin_lg_ch Family 112 224 230 47.4 2.5e-12 1 No_clan
Cotton_A_06585_CDS 20 101 12 103 PF14368.6 LTP_2 Family 8 94 97 38.4 1e-09 1 CL0482
Cotton_A_31342_CDS 52 451 44 472 PF00067.22 p450 Domain 31 440 463 262.6 6.4e-78 1 No_clan
Cotton_A_01219_CDS 131 167 130 170 PF12937.7 F-box-like Domain 2 37 48 31.0 1.8e-07 1 CL0271
Cotton_A_01219_CDS 288 311 287 311 PF13516.6 LRR_6 Repeat 2 24 24 8.8 1.8 1 CL0022
Cotton_A_01219_CDS 314 337 313 337 PF13516.6 LRR_6 Repeat 2 24 24 10.3 0.61 1 CL0022
Cotton_A_01219_CDS 340 362 339 363 PF13516.6 LRR_6 Repeat 2 23 24 9.9 0.84 1 CL0022
Cotton_A_01219_CDS 526 548 525 549 PF13516.6 LRR_6 Repeat 2 23 24 9.1 1.4 1 CL0022
Cotton_A_01219_CDS 608 628 608 628 PF13516.6 LRR_6 Repeat 4 24 24 13.2 0.072 1 CL0022
Cotton_A_01219_CDS 631 653 630 653 PF13516.6 LRR_6 Repeat 2 24 24 14.5 0.028 1 CL0022
Cotton_A_14807_CDS 42 140 42 142 PF02466.19 Tim17 Family 1 108 111 54.7 1.2e-14 1 No_clan
Cotton_A_01916_CDS 22 308 22 309 PF14576.6 SEO_N Family 1 286 287 415.8 7.5e-125 1 No_clan
Cotton_A_01916_CDS 471 698 470 699 PF14577.6 SEO_C Family 2 231 232 301.0 5e-90 1 No_clan
Cotton_A_23939_CDS 130 309 130 309 PF00174.19 Oxidored_molyb Domain 1 172 172 188.8 5.8e-56 1 CL0072
Cotton_A_23939_CDS 337 467 336 469 PF03404.16 Mo-co_dimer Domain 2 136 138 182.8 3e-54 1 CL0159
Cotton_A_23939_CDS 528 597 527 598 PF00173.28 Cyt-b5 Domain 2 73 74 81.5 3.5e-23 1 No_clan
Cotton_A_23939_CDS 647 753 646 753 PF00970.24 FAD_binding_6 Domain 2 99 99 120.1 4.1e-35 1 CL0076
Cotton_A_23939_CDS 773 879 773 881 PF00175.21 NAD_binding_1 Domain 1 107 109 112.9 1.1e-32 1 CL0091
Cotton_A_25666_CDS 475 559 475 560 PF06886.11 TPX2 Family 1 55 57 34.7 1.5e-08 1 No_clan
Cotton_A_31714_CDS 62 165 62 170 PF14226.6 DIOX_N Family 1 113 118 96.7 1.5e-27 1 CL0029
Cotton_A_10642_CDS 10 272 10 332 PF01593.24 Amino_oxidase Domain 1 265 452 61.2 1.1e-16 1 CL0063
Cotton_A_30945_CDS 280 318 279 323 PF13920.6 zf-C3HC4_3 Domain 2 43 50 31.9 9.1e-08 1 CL0229
Cotton_A_05322_CDS 133 355 130 358 PF02230.16 Abhydrolase_2 Domain 5 214 217 142.2 2e-41 1 CL0028
Cotton_A_04681_CDS 17 104 16 104 PF13334.6 DUF4094 Family 2 88 88 59.6 3e-16 1 No_clan
Cotton_A_04681_CDS 126 323 126 324 PF01762.21 Galactosyl_T Family 1 194 195 170.2 4.4e-50 1 CL0110
Cotton_A_12097_CDS 2 41 2 43 PF14438.6 SM-ATX Domain 1 40 81 38.6 8.5e-10 1 CL0527
Cotton_A_23583_CDS 53 200 51 201 PF04043.15 PMEI Domain 4 153 154 93.1 2e-26 1 No_clan
Cotton_A_23583_CDS 248 545 248 545 PF01095.19 Pectinesterase Family 1 298 298 480.3 1.5e-144 1 CL0268
Cotton_A_16260_CDS 125 443 125 443 PF14700.6 RPOL_N Domain 1 336 336 269.9 3.7e-80 1 No_clan
Cotton_A_16260_CDS 566 657 566 658 PF00940.19 RNA_pol Family 1 90 414 111.0 5.9e-32 1 No_clan
Cotton_A_03168_CDS 113 141 112 142 PF01535.20 PPR Family 2 30 31 21.3 0.00021 1 CL0020
Cotton_A_03168_CDS 152 175 150 177 PF01535.20 PPR Family 6 29 31 10.2 0.75 1 CL0020
Cotton_A_03168_CDS 184 206 182 206 PF01535.20 PPR Family 3 25 31 12.0 0.2 1 CL0020
Cotton_A_03168_CDS 214 263 214 263 PF13041.6 PPR_2 Repeat 1 50 50 69.4 2.1e-19 1 CL0020
Cotton_A_03168_CDS 285 333 285 334 PF13041.6 PPR_2 Repeat 1 49 50 63.4 1.7e-17 1 CL0020
Cotton_A_03168_CDS 355 404 355 404 PF13041.6 PPR_2 Repeat 1 50 50 60.1 1.7e-16 1 CL0020
Cotton_A_03168_CDS 428 473 425 474 PF13041.6 PPR_2 Repeat 4 49 50 51.3 9.6e-14 1 CL0020
Cotton_A_03168_CDS 499 517 498 519 PF01535.20 PPR Family 2 20 31 10.2 0.74 1 CL0020
Cotton_A_12260_CDS 67 360 65 360 PF00109.26 ketoacyl-synt Domain 7 253 253 155.6 1.7e-45 1 CL0046
Cotton_A_12260_CDS 368 484 368 485 PF02801.22 Ketoacyl-synt_C Domain 1 117 118 125.8 8.4e-37 1 CL0046
Cotton_A_17960_CDS 11 85 10 85 PF12609.8 DUF3774 Family 2 74 74 110.2 7.4e-32 1 No_clan
Cotton_A_32626_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 55.7 4.1e-15 1 CL0123
Cotton_A_32626_CDS 67 112 67 112 PF00249.31 Myb_DNA-binding Domain 1 46 46 56.5 2.3e-15 1 CL0123
Cotton_A_09449_CDS 3 169 1 175 PF00069.25 Pkinase Domain 103 259 264 96.8 1.4e-27 1 CL0016
Cotton_A_36503_CDS 20 188 17 190 PF13177.6 DNA_pol3_delta2 Domain 4 161 163 45.1 9e-12 1 CL0023
Cotton_A_07946_CDS 26 289 26 292 PF00067.22 p450 Domain 1 268 463 120.4 8.4e-35 1 No_clan
Cotton_A_00346_CDS 6 419 5 420 PF05056.12 DUF674 Family 2 448 449 370.1 1.6e-110 1 No_clan
Cotton_A_35844_CDS 38 458 36 458 PF00909.21 Ammonium_transp Family 3 399 399 458.3 1.8e-137 1 No_clan
Cotton_A_21728_CDS 38 202 31 204 PF00025.21 Arf Domain 8 173 175 154.1 2.4e-45 1 CL0023
Cotton_A_18509_CDS 36 143 36 143 PF04398.12 DUF538 Family 1 112 112 119.6 8.6e-35 1 No_clan
Cotton_A_03578_CDS 110 430 39 440 PF07690.16 MFS_1 Family 34 329 353 132.9 1.2e-38 1 CL0015
Cotton_A_22634_CDS 9 106 8 106 PF00438.20 S-AdoMet_synt_N Domain 2 99 99 143.7 2.2e-42 1 No_clan
Cotton_A_22634_CDS 122 155 122 158 PF02772.16 S-AdoMet_synt_M Domain 1 34 120 47.7 1.6e-12 1 No_clan
Cotton_A_06140_CDS 102 230 85 271 PF03209.15 PUCC Family 25 145 401 23.0 3.4e-05 1 CL0015
Cotton_A_26538_CDS 26 229 26 284 PF00069.25 Pkinase Domain 1 200 264 161.7 2.1e-47 1 CL0016
Cotton_A_14314_CDS 92 137 92 139 PF00646.33 F-box Domain 1 46 48 29.9 3.5e-07 1 CL0271
Cotton_A_05109_CDS 48 295 48 295 PF04873.13 EIN3 Family 1 252 252 429.6 3.2e-129 1 No_clan
Cotton_A_19754_CDS 69 298 69 299 PF00370.21 FGGY_N Domain 1 244 245 44.4 1.4e-11 1 CL0108
Cotton_A_19754_CDS 338 483 308 486 PF02782.16 FGGY_C Domain 34 195 198 31.2 1.7e-07 1 CL0108
Cotton_A_00598_CDS 24 63 24 63 PF00187.19 Chitin_bind_1 Domain 1 38 38 47.3 2e-12 1 No_clan
Cotton_A_00598_CDS 91 324 91 324 PF00182.19 Glyco_hydro_19 Domain 1 232 232 356.5 7.4e-107 1 CL0037
Cotton_A_34527_CDS 131 191 130 191 PF00046.29 Homeodomain Domain 2 57 57 64.5 5.6e-18 1 CL0123
Cotton_A_05807_CDS 36 91 36 91 PF01849.18 NAC Family 1 57 57 69.0 2.5e-19 1 No_clan
Cotton_A_26989_CDS 121 146 118 148 PF01535.20 PPR Family 4 29 31 15.1 0.021 1 CL0020
Cotton_A_26989_CDS 149 177 149 178 PF01535.20 PPR Family 1 29 31 33.5 2.7e-08 1 CL0020
Cotton_A_26989_CDS 181 211 181 211 PF01535.20 PPR Family 1 31 31 33.6 2.5e-08 1 CL0020
Cotton_A_26989_CDS 240 282 240 285 PF13041.6 PPR_2 Repeat 1 42 50 39.5 4.6e-10 1 CL0020
Cotton_A_26989_CDS 316 343 315 344 PF01535.20 PPR Family 3 30 31 25.1 1.3e-05 1 CL0020
Cotton_A_26989_CDS 344 389 342 391 PF13041.6 PPR_2 Repeat 3 48 50 36.5 4.1e-09 1 CL0020
Cotton_A_26989_CDS 416 440 415 443 PF01535.20 PPR Family 2 26 31 18.6 0.0015 1 CL0020
Cotton_A_26989_CDS 488 510 482 510 PF01535.20 PPR Family 8 30 31 9.5 1.2 1 CL0020
Cotton_A_11192_CDS 493 612 486 613 PF00271.31 Helicase_C Family 8 110 111 51.3 1.3e-13 1 CL0023
Cotton_A_11192_CDS 674 768 674 803 PF04408.23 HA2 Domain 1 108 108 32.7 7.2e-08 1 No_clan
Cotton_A_11192_CDS 837 913 837 917 PF07717.16 OB_NTP_bind Domain 1 78 83 31.5 1.7e-07 1 CL0021
Cotton_A_11192_CDS 1617 1673 1606 1673 PF01485.21 IBR Domain 10 62 62 33.5 3.6e-08 1 CL0229
Cotton_A_17117_CDS 11 248 10 251 PF00743.19 FMO-like Family 2 215 532 115.6 2e-33 1 CL0063
Cotton_A_17117_CDS 277 406 260 415 PF00743.19 FMO-like Family 309 438 532 55.7 2.9e-15 1 CL0063
Cotton_A_40787_CDS 32 103 7 103 PF02519.14 Auxin_inducible Family 19 90 90 99.4 9.8e-29 1 No_clan
Cotton_A_06984_CDS 9 618 9 618 PF00012.20 HSP70 Family 1 599 599 873.9 4.5e-263 1 CL0108
Cotton_A_32726_CDS 38 86 15 93 PF00230.20 MIP Family 165 210 227 42.8 4.8e-11 1 No_clan
Cotton_A_33433_CDS 20 99 19 99 PF00626.22 Gelsolin Domain 2 76 76 50.5 1.5e-13 1 CL0092
Cotton_A_33433_CDS 139 205 136 209 PF00626.22 Gelsolin Domain 4 70 76 39.8 3.1e-10 1 CL0092
Cotton_A_33433_CDS 254 325 251 326 PF00626.22 Gelsolin Domain 5 75 76 44.1 1.4e-11 1 CL0092
Cotton_A_33433_CDS 392 470 388 471 PF00626.22 Gelsolin Domain 5 75 76 39.1 5.3e-10 1 CL0092
Cotton_A_33433_CDS 519 589 518 589 PF00626.22 Gelsolin Domain 2 76 76 24.9 1.3e-05 1 CL0092
Cotton_A_33433_CDS 609 685 606 686 PF00626.22 Gelsolin Domain 4 75 76 24.5 1.9e-05 1 CL0092
Cotton_A_33433_CDS 862 897 862 897 PF02209.19 VHP Domain 1 36 36 61.6 5.1e-17 1 No_clan
Cotton_A_41072_CDS 11 75 11 75 PF00035.26 dsrm Domain 1 67 67 30.1 5.8e-07 1 CL0196
Cotton_A_28560_CDS 14 145 14 145 PF00168.30 C2 Domain 1 103 103 91.6 3.2e-26 1 CL0154
Cotton_A_28560_CDS 349 383 348 383 PF00614.22 PLDc Family 2 28 28 31.4 1.4e-07 1 CL0479
Cotton_A_28560_CDS 545 729 544 738 PF13091.6 PLDc_2 Domain 2 114 133 31.0 1.9e-07 1 CL0479
Cotton_A_28560_CDS 765 835 765 836 PF12357.8 PLD_C Family 1 71 72 107.8 1.9e-31 1 No_clan
Cotton_A_01679_CDS 7 171 7 172 PF00160.21 Pro_isomerase Domain 1 157 158 168.0 1.8e-49 1 CL0475
Cotton_A_01679_CDS 298 331 298 331 PF00515.28 TPR_1 Repeat 1 34 34 32.8 4e-08 1 CL0020
Cotton_A_03159_CDS 5 97 5 99 PF04057.12 Rep-A_N Domain 1 99 101 104.7 2.2e-30 1 CL0021
Cotton_A_03159_CDS 193 275 192 282 PF01336.25 tRNA_anti-codon Domain 2 69 76 38.8 6.7e-10 1 CL0021
Cotton_A_03159_CDS 302 406 302 406 PF16900.5 REPA_OB_2 Domain 1 98 98 99.6 7.3e-29 1 CL0021
Cotton_A_03159_CDS 464 615 464 615 PF08646.10 Rep_fac-A_C Family 1 146 146 177.0 1.8e-52 1 CL0021
Cotton_A_18937_CDS 112 212 112 214 PF02362.21 B3 Family 1 99 101 76.9 8.6e-22 1 CL0405
Cotton_A_18937_CDS 238 317 238 317 PF06507.13 Auxin_resp Family 1 83 83 107.9 2.3e-31 1 No_clan
Cotton_A_18937_CDS 547 652 529 656 PF02309.16 AUX_IAA Family 112 232 237 46.4 4.2e-12 1 CL0072
Cotton_A_18937_CDS 671 822 668 825 PF03552.14 Cellulose_synt Family 42 207 722 37.8 8.1e-10 1 CL0110
Cotton_A_18937_CDS 826 974 822 1007 PF03552.14 Cellulose_synt Family 466 615 722 55.2 4.4e-15 1 CL0110
Cotton_A_10601_CDS 306 605 305 610 PF00928.21 Adap_comp_sub Family 2 258 264 129.4 1.5e-37 1 CL0448
Cotton_A_01855_CDS 70 116 62 117 PF08276.11 PAN_2 Domain 17 66 67 21.9 0.00014 1 CL0168
Cotton_A_20170_CDS 222 447 222 447 PF02854.19 MIF4G Family 1 212 212 198.4 1.1e-58 1 CL0020
Cotton_A_20170_CDS 630 741 630 742 PF02847.17 MA3 Family 1 112 113 81.1 5.7e-23 1 CL0020
Cotton_A_21988_CDS 21 187 21 187 PF02041.16 Auxin_BP Domain 1 167 167 334.4 9.5e-101 1 CL0029
Cotton_A_17589_CDS 101 424 101 425 PF00762.19 Ferrochelatase Domain 1 316 317 365.2 2.6e-109 1 CL0043
Cotton_A_23375_CDS 12 81 11 82 PF07983.13 X8 Domain 2 75 76 70.9 1.1e-19 1 No_clan
Cotton_A_23375_CDS 90 134 83 135 PF07983.13 X8 Domain 25 75 76 32.5 1.1e-07 1 No_clan
Cotton_A_14203_CDS 193 212 191 214 PF05553.11 DUF761 Family 4 23 36 27.6 1.5e-06 1 No_clan
Cotton_A_01873_CDS 29 63 29 65 PF04193.14 PQ-loop Repeat 1 35 61 41.5 8.2e-11 1 CL0141
Cotton_A_01873_CDS 247 277 246 283 PF04193.14 PQ-loop Repeat 2 32 61 22.7 6.4e-05 1 CL0141
Cotton_A_00578_CDS 140 239 137 239 PF03168.13 LEA_2 Domain 4 101 101 45.9 6.6e-12 1 CL0159
Cotton_A_00237_CDS 8 169 7 170 PF00160.21 Pro_isomerase Domain 2 157 158 171.2 2e-50 1 CL0475
Cotton_A_13266_CDS 134 291 133 292 PF05142.12 DUF702 Family 2 149 150 208.0 9.2e-62 1 No_clan
Cotton_A_32047_CDS 44 163 39 197 PF00156.27 Pribosyltran Domain 7 124 159 61.9 5e-17 1 CL0533
Cotton_A_01985_CDS 18 164 13 175 PF10294.9 Methyltransf_16 Family 6 161 174 77.1 1.3e-21 1 CL0063
Cotton_A_00831_CDS 11 131 11 131 PF02365.15 NAM Family 1 126 126 110.5 1e-31 1 No_clan
Cotton_A_12519_CDS 145 213 144 303 PF03145.16 Sina Family 2 72 200 54.8 1.1e-14 1 CL0389
Cotton_A_31468_CDS 210 328 209 328 PF00703.21 Glyco_hydro_2 Domain 2 110 110 36.3 7.3e-09 1 CL0159
Cotton_A_31468_CDS 341 472 337 483 PF02836.17 Glyco_hydro_2_C Domain 6 143 302 22.1 6.8e-05 1 CL0058
Cotton_A_04042_CDS 22 257 22 261 PF12697.7 Abhydrolase_6 Domain 1 214 220 48.8 1.3e-12 1 CL0028
Cotton_A_04250_CDS 208 293 207 319 PF02338.19 OTU Family 2 92 127 35.9 9.3e-09 1 CL0125
Cotton_A_00699_CDS 340 388 340 388 PF14604.6 SH3_9 Domain 1 49 49 38.5 7.6e-10 1 CL0010
Cotton_A_23612_CDS 8 367 8 368 PF10186.9 Atg14 Family 1 318 319 217.7 2e-64 1 CL0551
Cotton_A_31014_CDS 1 127 1 127 PF12590.8 Acyl-thio_N Family 1 131 131 195.3 5e-58 1 No_clan
Cotton_A_31014_CDS 138 402 138 403 PF01643.17 Acyl-ACP_TE Family 1 247 248 271.5 5.5e-81 1 CL0050
Cotton_A_30439_CDS 25 48 24 54 PF01535.20 PPR Family 2 25 31 17.6 0.0033 1 CL0020
Cotton_A_30439_CDS 123 171 123 172 PF13041.6 PPR_2 Repeat 1 49 50 37.2 2.5e-09 1 CL0020
Cotton_A_30439_CDS 199 224 196 226 PF01535.20 PPR Family 4 29 31 14.1 0.042 1 CL0020
Cotton_A_30439_CDS 227 253 227 254 PF01535.20 PPR Family 1 27 31 21.3 0.00022 1 CL0020
Cotton_A_30439_CDS 298 326 297 327 PF01535.20 PPR Family 2 30 31 21.7 0.00016 1 CL0020
Cotton_A_30439_CDS 328 355 328 357 PF01535.20 PPR Family 1 28 31 24.4 2.2e-05 1 CL0020
Cotton_A_30439_CDS 427 473 426 475 PF13041.6 PPR_2 Repeat 2 48 50 36.1 5.5e-09 1 CL0020
Cotton_A_30439_CDS 503 526 503 529 PF01535.20 PPR Family 4 27 31 9.7 1.1 1 CL0020
Cotton_A_30439_CDS 531 561 531 561 PF01535.20 PPR Family 1 31 31 18.1 0.0022 1 CL0020
Cotton_A_30439_CDS 633 677 629 678 PF13041.6 PPR_2 Repeat 5 49 50 45.8 5e-12 1 CL0020
Cotton_A_30439_CDS 707 728 704 730 PF01535.20 PPR Family 5 26 31 11.1 0.4 1 CL0020
Cotton_A_30439_CDS 804 926 803 927 PF14432.6 DYW_deaminase Family 2 126 127 129.4 6.6e-38 1 CL0109
Cotton_A_26944_CDS 161 189 161 191 PF01535.20 PPR Family 1 29 31 28.3 1.3e-06 1 CL0020
Cotton_A_26944_CDS 260 308 260 309 PF13041.6 PPR_2 Repeat 1 49 50 41.9 8.4e-11 1 CL0020
Cotton_A_26944_CDS 361 409 361 410 PF13041.6 PPR_2 Repeat 1 49 50 34.2 2.1e-08 1 CL0020
Cotton_A_26944_CDS 436 460 435 463 PF01535.20 PPR Family 2 26 31 19.1 0.0011 1 CL0020
Cotton_A_26944_CDS 506 531 503 531 PF01535.20 PPR Family 6 31 31 11.2 0.36 1 CL0020
Cotton_A_17347_CDS 42 62 42 67 PF13202.6 EF-hand_5 Domain 1 21 25 28.1 8.9e-07 1 CL0220
Cotton_A_17347_CDS 131 195 130 196 PF13499.6 EF-hand_7 Domain 2 70 71 39.5 5.6e-10 1 CL0220
Cotton_A_14201_CDS 215 248 215 250 PF00320.27 GATA Domain 1 34 36 53.8 1e-14 1 CL0167
Cotton_A_07673_CDS 1 59 1 59 PF04783.12 DUF630 Family 1 59 59 82.9 1.3e-23 1 No_clan
Cotton_A_07673_CDS 381 561 381 562 PF04782.12 DUF632 Family 1 176 310 190.0 6.1e-56 1 No_clan
Cotton_A_07673_CDS 580 710 577 711 PF04782.12 DUF632 Family 172 309 310 115.4 3.1e-33 1 No_clan
Cotton_A_39845_CDS 39 313 39 314 PF04674.12 Phi_1 Family 1 275 276 282.8 2.6e-84 1 No_clan
Cotton_A_07987_CDS 50 345 48 345 PF03016.15 Exostosin Family 4 300 300 239.1 5.9e-71 1 No_clan
Cotton_A_15740_CDS 67 151 67 152 PF03330.18 DPBB_1 Domain 1 82 83 76.5 1.4e-21 1 CL0199
Cotton_A_15740_CDS 163 240 163 240 PF01357.21 Pollen_allerg_1 Domain 1 80 80 103.9 3.5e-30 1 CL0159
Cotton_A_00703_CDS 114 223 106 233 PF01554.18 MatE Family 9 116 161 33.4 3.2e-08 1 CL0222
Cotton_A_16740_CDS 38 255 28 255 PF01063.19 Aminotran_4 Domain 14 223 223 105.4 3.9e-30 1 No_clan
Cotton_A_19636_CDS 87 502 31 509 PF00067.22 p450 Domain 46 455 463 238.1 1.6e-70 1 No_clan
Cotton_A_18080_CDS 30 62 28 62 PF06376.12 AGP Family 1 36 36 57.6 8.2e-16 1 No_clan
Cotton_A_14543_CDS 163 248 161 256 PF00152.20 tRNA-synt_2 Domain 85 174 314 52.7 3.2e-14 1 CL0040
Cotton_A_16853_CDS 30 132 28 141 PF04410.14 Gar1 Domain 22 137 154 109.7 1.1e-31 1 CL0575
Cotton_A_10358_CDS 253 310 253 310 PF04844.13 Ovate Family 1 58 58 88.8 1.6e-25 1 No_clan
Cotton_A_16234_CDS 6 100 5 102 PF13881.6 Rad60-SLD_2 Domain 2 96 111 125.3 1.1e-36 1 CL0072
Cotton_A_31411_CDS 97 160 47 163 PF04845.13 PurA Family 153 216 219 49.4 3.6e-13 1 CL0609
Cotton_A_00787_CDS 84 342 81 345 PF00069.25 Pkinase Domain 5 260 264 46.9 2.3e-12 1 CL0016
Cotton_A_28809_CDS 418 492 418 493 PF00076.22 RRM_1 Domain 1 69 70 22.2 8.8e-05 1 CL0221
Cotton_A_12583_CDS 25 83 23 84 PF00170.21 bZIP_1 Family 5 63 64 46.6 2.8e-12 1 CL0018
Cotton_A_27691_CDS 7 56 2 57 PF00005.27 ABC_tran Domain 85 136 137 30.2 5.6e-07 1 CL0023
Cotton_A_05603_CDS 98 123 92 125 PF00249.31 Myb_DNA-binding Domain 20 44 46 27.1 3.5e-06 1 CL0123
Cotton_A_37388_CDS 23 61 18 61 PF00505.19 HMG_box Domain 31 69 69 38.4 1.2e-09 1 CL0114
Cotton_A_01394_CDS 120 261 119 263 PF03634.13 TCP Family 2 154 156 123.6 1e-35 1 No_clan
Cotton_A_29320_CDS 121 219 121 219 PF08414.10 NADPH_Ox Family 1 101 101 128.6 9.7e-38 1 CL0220
Cotton_A_29320_CDS 380 536 379 537 PF01794.19 Ferric_reduct Family 2 124 125 69.7 2.4e-19 1 CL0328
Cotton_A_29320_CDS 580 696 578 697 PF08022.12 FAD_binding_8 Domain 3 108 109 115.3 1.4e-33 1 CL0076
Cotton_A_29320_CDS 703 866 703 867 PF08030.12 NAD_binding_6 Domain 1 155 156 173.2 4.1e-51 1 CL0091
Cotton_A_12846_CDS 25 52 25 52 PF05678.14 VQ Motif 1 27 28 39.1 3.6e-10 1 No_clan
Cotton_A_08326_CDS 242 415 235 427 PF00201.18 UDPGT Family 250 398 499 80.9 8.5e-23 1 CL0113
Cotton_A_10434_CDS 12 207 12 209 PF03357.21 Snf7 Family 1 171 173 183.8 2e-54 1 CL0235
Cotton_A_01356_CDS 152 179 151 180 PF14383.6 VARLMGL Domain 4 31 32 45.3 4.4e-12 1 No_clan
Cotton_A_01356_CDS 524 685 523 685 PF14309.6 DUF4378 Family 2 165 165 104.3 8.8e-30 1 No_clan
Cotton_A_03270_CDS 60 191 58 191 PF02469.22 Fasciclin Domain 3 128 128 79.9 1.8e-22 1 No_clan
Cotton_A_40501_CDS 145 201 145 202 PF03106.15 WRKY Domain 1 58 59 87.6 4.6e-25 1 CL0274
Cotton_A_04054_CDS 1 81 1 82 PF00078.27 RVT_1 Family 132 221 222 59.4 3.5e-16 1 CL0027
Cotton_A_19079_CDS 139 253 132 258 PF02577.14 DNase-RNase Family 13 123 129 72.0 3.5e-20 1 No_clan
Cotton_A_19079_CDS 400 425 372 426 PF03765.15 CRAL_TRIO_N Domain 29 53 54 27.9 2e-06 1 CL0214
Cotton_A_19079_CDS 450 616 449 616 PF00650.20 CRAL_TRIO Domain 2 159 159 106.7 9.3e-31 1 CL0512
Cotton_A_17365_CDS 14 143 10 154 PF00892.20 EamA Family 5 132 137 54.7 1.2e-14 1 CL0184
Cotton_A_17365_CDS 190 328 189 329 PF00892.20 EamA Family 2 136 137 48.8 7.7e-13 1 CL0184
Cotton_A_28705_CDS 523 591 523 591 PF00076.22 RRM_1 Domain 1 70 70 66.3 1.6e-18 1 CL0221
Cotton_A_28705_CDS 632 695 623 696 PF00076.22 RRM_1 Domain 6 69 70 45.2 6.1e-12 1 CL0221
Cotton_A_00933_CDS 24 146 24 147 PF00241.20 Cofilin_ADF Domain 1 120 121 132.4 7e-39 1 CL0092
Cotton_A_30379_CDS 6 418 4 420 PF00022.19 Actin Family 4 403 407 275.0 8.2e-82 1 CL0108
Cotton_A_06515_CDS 96 200 62 201 PF01029.18 NusB Domain 27 133 134 75.0 6.2e-21 1 CL0633
Cotton_A_06515_CDS 329 490 327 508 PF01189.17 Methyltr_RsmB-F Family 3 164 200 155.0 1.9e-45 1 CL0063
Cotton_A_07406_CDS 167 226 165 227 PF13812.6 PPR_3 Repeat 3 62 63 42.6 4.8e-11 1 CL0020
Cotton_A_07406_CDS 250 278 250 280 PF01535.20 PPR Family 1 29 31 17.1 0.0047 1 CL0020
Cotton_A_29260_CDS 40 298 38 311 PF00664.23 ABC_membrane Family 3 259 274 154.0 5.9e-45 1 CL0241
Cotton_A_29260_CDS 379 527 378 527 PF00005.27 ABC_tran Domain 2 137 137 120.6 6.6e-35 1 CL0023
Cotton_A_29260_CDS 679 947 677 951 PF00664.23 ABC_membrane Family 3 270 274 177.6 3.9e-52 1 CL0241
Cotton_A_29260_CDS 1018 1168 1018 1168 PF00005.27 ABC_tran Domain 1 137 137 121.1 4.7e-35 1 CL0023
Cotton_A_18101_CDS 143 228 143 239 PF02225.22 PA Family 1 82 89 37.7 1.6e-09 1 CL0364
Cotton_A_18101_CDS 326 516 326 530 PF04389.17 Peptidase_M28 Family 1 183 198 82.2 3.9e-23 1 CL0035
Cotton_A_18101_CDS 573 700 573 701 PF04253.15 TFR_dimer Domain 1 120 121 111.8 2.1e-32 1 No_clan
Cotton_A_19555_CDS 118 160 115 161 PF12937.7 F-box-like Domain 4 47 48 27.6 2e-06 1 CL0271
Cotton_A_36084_CDS 1 76 1 76 PF02788.16 RuBisCO_large_N Domain 47 120 120 82.7 2.2e-23 1 No_clan
Cotton_A_36084_CDS 86 137 86 137 PF00016.20 RuBisCO_large Domain 1 52 299 79.5 2.5e-22 1 No_clan
Cotton_A_14386_CDS 2 48 1 76 PF00201.18 UDPGT Family 334 380 499 60.3 1.5e-16 1 CL0113
Cotton_A_40400_CDS 16 74 6 75 PF03357.21 Snf7 Family 41 99 173 45.0 8.6e-12 1 CL0235
Cotton_A_31434_CDS 53 111 40 121 PF00270.29 DEAD Domain 13 73 176 34.4 1.8e-08 1 CL0023
Cotton_A_22848_CDS 145 236 145 236 PF03908.13 Sec20 Family 1 92 92 104.1 2.7e-30 1 CL0147
Cotton_A_40894_CDS 36 85 21 92 PF04281.13 Tom22 Family 78 127 138 29.9 4.1e-07 1 No_clan
Cotton_A_00277_CDS 40 108 21 118 PF12796.7 Ank_2 Repeat 24 78 83 30.1 5.3e-07 1 CL0465
Cotton_A_00277_CDS 123 209 123 218 PF12796.7 Ank_2 Repeat 1 75 83 62.4 4.4e-17 1 CL0465
Cotton_A_00277_CDS 254 317 243 318 PF12796.7 Ank_2 Repeat 25 82 83 33.6 4.4e-08 1 CL0465
Cotton_A_00277_CDS 369 480 367 480 PF13962.6 PGG Domain 4 116 116 96.1 1.1e-27 1 No_clan
Cotton_A_05340_CDS 37 78 37 101 PF02298.17 Cu_bind_like Domain 1 40 84 38.8 6.8e-10 1 CL0026
Cotton_A_01379_CDS 2 32 1 32 PF08263.12 LRRNT_2 Family 10 41 41 26.0 8.5e-06 1 No_clan
Cotton_A_01379_CDS 108 167 107 167 PF13855.6 LRR_8 Repeat 2 61 61 37.9 1.1e-09 1 CL0022
Cotton_A_01379_CDS 372 633 368 633 PF07714.17 Pkinase_Tyr Domain 5 259 259 122.5 1.8e-35 1 CL0016
Cotton_A_16790_CDS 150 224 144 226 PF17774.1 YlmH_RBD Domain 9 82 84 45.3 8.2e-12 1 CL0221
Cotton_A_16790_CDS 248 290 244 290 PF01479.25 S4 Domain 6 48 48 32.7 4.5e-08 1 CL0492
Cotton_A_08562_CDS 8 30 8 30 PF10584.9 Proteasome_A_N Domain 1 23 23 50.3 1.3e-13 1 CL0052
Cotton_A_08562_CDS 31 234 31 234 PF00227.26 Proteasome Domain 1 190 190 192.4 5.2e-57 1 CL0052
Cotton_A_07331_CDS 82 157 78 157 PF03951.19 Gln-synt_N Domain 6 83 83 40.2 2e-10 1 No_clan
Cotton_A_07331_CDS 183 315 164 343 PF00120.24 Gln-synt_C Domain 21 157 345 41.7 6.9e-11 1 CL0286
Cotton_A_10005_CDS 6 231 5 241 PF16746.5 BAR_3 Domain 7 229 238 134.9 3.7e-39 1 CL0145
Cotton_A_10005_CDS 294 427 293 428 PF00169.29 PH Domain 2 104 105 45.6 8e-12 1 CL0266
Cotton_A_10005_CDS 503 637 500 640 PF01412.18 ArfGap Domain 4 114 117 114.9 2e-33 1 No_clan
Cotton_A_10005_CDS 736 800 720 802 PF12796.7 Ank_2 Repeat 24 81 83 37.1 3.7e-09 1 CL0465
Cotton_A_22952_CDS 16 136 13 157 PF00892.20 EamA Family 4 122 137 59.9 3e-16 1 CL0184
Cotton_A_22952_CDS 189 328 188 329 PF00892.20 EamA Family 2 136 137 41.0 1.9e-10 1 CL0184
Cotton_A_36007_CDS 119 278 118 282 PF01764.25 Lipase_3 Family 2 138 142 114.7 3e-33 1 CL0028
Cotton_A_01673_CDS 72 150 50 155 PF02362.21 B3 Family 13 96 101 39.7 3.4e-10 1 CL0405
Cotton_A_01673_CDS 178 188 178 190 PF02178.19 AT_hook Motif 1 11 13 16.2 0.0068 1 No_clan
Cotton_A_02007_CDS 292 326 292 327 PF00320.27 GATA Domain 1 35 36 58.6 3.4e-16 1 CL0167
Cotton_A_16650_CDS 27 41 21 43 PF13202.6 EF-hand_5 Domain 9 23 25 15.5 0.0088 1 CL0220
Cotton_A_16650_CDS 54 138 52 140 PF13499.6 EF-hand_7 Domain 3 69 71 39.6 5.2e-10 1 CL0220
Cotton_A_16650_CDS 154 167 152 175 PF13202.6 EF-hand_5 Domain 4 17 25 14.1 0.024 1 CL0220
Cotton_A_14208_CDS 67 160 67 176 PF14226.6 DIOX_N Family 2 95 118 41.1 2.5e-10 1 CL0029
Cotton_A_32641_CDS 4 90 4 100 PF02362.21 B3 Family 1 87 101 30.7 2.2e-07 1 CL0405
Cotton_A_32641_CDS 139 227 139 237 PF02362.21 B3 Family 1 89 101 39.9 2.8e-10 1 CL0405
Cotton_A_11162_CDS 10 215 9 216 PF01171.20 ATP_bind_3 Family 2 181 182 193.8 2.1e-57 1 CL0039
Cotton_A_12752_CDS 8 180 3 184 PF00195.19 Chal_sti_synt_N Domain 6 178 225 240.6 1.3e-71 1 CL0046
Cotton_A_18932_CDS 52 134 52 134 PF14547.6 Hydrophob_seed Domain 1 84 85 97.1 5.3e-28 1 CL0482
Cotton_A_33802_CDS 79 334 78 334 PF00109.26 ketoacyl-synt Domain 2 253 253 184.6 2.4e-54 1 CL0046
Cotton_A_33802_CDS 343 455 342 456 PF02801.22 Ketoacyl-synt_C Domain 2 117 118 106.9 6.1e-31 1 CL0046
Cotton_A_25884_CDS 70 509 69 525 PF00067.22 p450 Domain 2 446 463 270.8 2.1e-80 1 No_clan
Cotton_A_12212_CDS 170 294 167 328 PF13847.6 Methyltransf_31 Domain 6 127 152 74.1 1e-20 1 CL0063
Cotton_A_07320_CDS 91 162 91 162 PF04640.14 PLATZ Family 1 82 82 99.2 1.6e-28 1 No_clan
Cotton_A_01520_CDS 192 272 176 274 PF02577.14 DNase-RNase Family 49 127 129 66.5 1.7e-18 1 No_clan
Cotton_A_01520_CDS 307 335 306 336 PF02151.19 UVR Family 7 35 36 21.1 0.00019 1 CL0671
Cotton_A_05398_CDS 183 202 181 203 PF05553.11 DUF761 Family 3 22 36 27.6 1.5e-06 1 No_clan
Cotton_A_37723_CDS 78 167 77 174 PF01453.24 B_lectin Domain 2 93 105 57.8 1.3e-15 1 No_clan
Cotton_A_23865_CDS 41 77 38 77 PF08263.12 LRRNT_2 Family 4 41 41 47.4 1.8e-12 1 No_clan
Cotton_A_23865_CDS 223 284 223 284 PF13855.6 LRR_8 Repeat 1 61 61 30.1 2.9e-07 1 CL0022
Cotton_A_23865_CDS 343 358 342 359 PF13516.6 LRR_6 Repeat 2 17 24 12.3 0.14 1 CL0022
Cotton_A_23865_CDS 400 458 399 459 PF13855.6 LRR_8 Repeat 2 60 61 27.8 1.6e-06 1 CL0022
Cotton_A_23865_CDS 668 728 668 728 PF13855.6 LRR_8 Repeat 1 61 61 29.2 5.7e-07 1 CL0022
Cotton_A_23865_CDS 767 788 766 788 PF00560.33 LRR_1 Repeat 2 23 23 10.8 0.63 1 CL0022
Cotton_A_23865_CDS 857 878 856 878 PF00560.33 LRR_1 Repeat 2 23 23 9.4 1.8 1 CL0022
Cotton_A_31891_CDS 3 80 1 81 PF01419.17 Jacalin Domain 53 132 133 61.1 1e-16 1 CL0568
Cotton_A_31891_CDS 186 316 186 317 PF01419.17 Jacalin Domain 1 132 133 102.0 2.3e-29 1 CL0568
Cotton_A_31891_CDS 382 513 382 514 PF01419.17 Jacalin Domain 1 132 133 111.3 3e-32 1 CL0568
Cotton_A_14621_CDS 31 176 26 182 PF00270.29 DEAD Domain 7 170 176 28.0 1.6e-06 1 CL0023
Cotton_A_14621_CDS 263 381 249 382 PF00271.31 Helicase_C Family 11 110 111 49.4 4.9e-13 1 CL0023
Cotton_A_22368_CDS 1 45 1 51 PF03140.15 DUF247 Family 282 328 397 33.9 1.9e-08 1 No_clan
Cotton_A_18057_CDS 99 185 95 199 PF00085.20 Thioredoxin Domain 5 90 103 64.0 1e-17 1 CL0172
Cotton_A_11660_CDS 31 173 30 182 PF00106.25 adh_short Domain 2 139 195 91.3 5.1e-26 1 CL0063
Cotton_A_20727_CDS 60 104 60 104 PF12023.8 DUF3511 Family 1 45 45 93.4 5.1e-27 1 No_clan
Cotton_A_05266_CDS 116 390 113 390 PF01008.17 IF-2B Family 4 282 282 221.5 1.3e-65 1 CL0246
Cotton_A_29730_CDS 52 76 52 76 PF12874.7 zf-met Domain 1 25 25 28.4 1.5e-06 1 CL0361
Cotton_A_29730_CDS 102 196 102 196 PF16835.5 SF3A2 Domain 1 96 96 123.6 3.1e-36 1 No_clan
Cotton_A_05671_CDS 16 105 9 105 PF02519.14 Auxin_inducible Family 8 90 90 65.4 3.8e-18 1 No_clan
Cotton_A_31679_CDS 54 141 51 143 PF08555.10 DUF1754 Family 6 96 98 33.0 7.7e-08 1 No_clan
Cotton_A_29430_CDS 10 405 9 411 PF01676.18 Metalloenzyme Family 2 212 248 81.3 6.7e-23 1 CL0088
Cotton_A_29430_CDS 45 220 45 220 PF10143.9 PhosphMutase Family 1 170 170 184.3 1.6e-54 1 No_clan
Cotton_A_05698_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 49.3 4.2e-13 1 CL0123
Cotton_A_05698_CDS 67 111 67 112 PF00249.31 Myb_DNA-binding Domain 1 45 46 50.8 1.4e-13 1 CL0123
Cotton_A_02208_CDS 22 83 21 93 PF04997.12 RNA_pol_Rpb1_1 Domain 2 64 312 40.4 2.1e-10 1 No_clan
Cotton_A_11707_CDS 38 132 37 133 PF01657.17 Stress-antifung Family 2 94 95 63.7 1.8e-17 1 No_clan
Cotton_A_11707_CDS 162 235 146 237 PF01657.17 Stress-antifung Family 18 93 95 40.9 2.5e-10 1 No_clan
Cotton_A_32871_CDS 254 303 253 305 PF05739.19 SNARE Family 2 51 53 40.7 1.7e-10 1 No_clan
Cotton_A_09290_CDS 184 615 184 615 PF11904.8 GPCR_chapero_1 Domain 1 307 307 344.6 5.5e-103 1 No_clan
Cotton_A_18502_CDS 85 327 31 334 PF00481.21 PP2C Family 30 249 258 148.7 2.3e-43 1 CL0238
Cotton_A_07564_CDS 3 200 1 201 PF07279.11 DUF1442 Family 4 217 218 92.8 1.8e-26 1 CL0063
Cotton_A_40873_CDS 8 255 6 255 PF00335.20 Tetraspanin Family 3 229 229 118.7 3e-34 1 CL0347
Cotton_A_36407_CDS 172 437 171 437 PF04104.14 DNA_primase_lrg Family 2 266 266 311.2 5.5e-93 1 CL0242
Cotton_A_21967_CDS 12 69 2 69 PF00067.22 p450 Domain 352 410 463 29.0 4.5e-07 1 No_clan
Cotton_A_32761_CDS 34 143 33 154 PF08240.12 ADH_N Domain 2 102 109 37.3 2e-09 1 CL0296
Cotton_A_32761_CDS 197 326 197 326 PF13602.6 ADH_zinc_N_2 Domain 1 133 133 80.1 2.9e-22 1 CL0063
Cotton_A_01044_CDS 1 49 1 77 PF18376.1 MDD_C Domain 103 148 187 30.6 2.5e-07 1 CL0677
Cotton_A_32264_CDS 114 164 113 164 PF00847.20 AP2 Domain 2 54 54 46.0 4.5e-12 1 CL0081
Cotton_A_13223_CDS 6 46 5 48 PF14555.6 UBA_4 Domain 2 41 43 43.5 2e-11 1 CL0214
Cotton_A_13223_CDS 379 457 377 458 PF00789.20 UBX Domain 3 80 81 66.7 1.6e-18 1 CL0072
Cotton_A_26122_CDS 9 61 9 61 PF14570.6 zf-RING_4 Domain 1 48 48 72.8 1.4e-20 1 CL0229
Cotton_A_26122_CDS 112 190 112 190 PF00076.22 RRM_1 Domain 1 70 70 25.6 8e-06 1 CL0221
Cotton_A_29805_CDS 226 472 221 495 PF00176.23 SNF2_N Family 58 313 350 95.0 3.7e-27 1 CL0023
Cotton_A_29805_CDS 538 631 530 654 PF00271.31 Helicase_C Family 11 102 111 39.3 6.9e-10 1 CL0023
Cotton_A_29805_CDS 1189 1219 1180 1224 PF01844.23 HNH Family 12 41 47 25.5 1.1e-05 1 CL0263
Cotton_A_23841_CDS 181 335 169 338 PF17177.4 PPR_long Domain 13 176 212 28.4 9.2e-07 1 CL0020
Cotton_A_23841_CDS 340 398 340 401 PF13812.6 PPR_3 Repeat 1 59 63 38.6 8.1e-10 1 CL0020
Cotton_A_23841_CDS 411 453 410 456 PF13812.6 PPR_3 Repeat 2 44 63 19.5 0.00079 1 CL0020
Cotton_A_02273_CDS 117 218 116 219 PF00237.19 Ribosomal_L22 Domain 2 102 103 89.6 1.3e-25 1 No_clan
Cotton_A_16333_CDS 105 348 103 355 PF03514.14 GRAS Family 3 252 374 227.0 3.3e-67 1 CL0063
Cotton_A_09421_CDS 6 164 5 165 PF06172.11 Cupin_5 Domain 2 140 141 141.6 1.8e-41 1 CL0029
Cotton_A_28482_CDS 43 403 43 404 PF12819.7 Malectin_like Domain 1 335 336 101.0 7.3e-29 1 CL0202
Cotton_A_28482_CDS 506 771 501 773 PF07714.17 Pkinase_Tyr Domain 6 257 259 155.5 1.5e-45 1 CL0016
Cotton_A_11232_CDS 33 88 31 88 PF00403.26 HMA Domain 3 62 62 54.7 1e-14 1 No_clan
Cotton_A_07638_CDS 105 446 105 447 PF03630.14 Fumble Family 1 329 330 451.3 1.9e-135 1 CL0108
Cotton_A_07638_CDS 634 914 582 918 PF01937.19 DUF89 Family 68 348 353 146.3 1.1e-42 1 No_clan
Cotton_A_28303_CDS 1 238 1 238 PF00931.22 NB-ARC Domain 4 252 252 230.3 2e-68 1 CL0023
Cotton_A_28303_CDS 375 435 375 435 PF13855.6 LRR_8 Repeat 1 61 61 41.9 6.2e-11 1 CL0022
Cotton_A_20422_CDS 64 309 63 310 PF00520.31 Ion_trans Family 2 244 245 133.2 8.9e-39 1 CL0030
Cotton_A_20422_CDS 402 502 400 503 PF00027.29 cNMP_binding Domain 3 88 89 33.3 3.8e-08 1 CL0029
Cotton_A_20422_CDS 548 639 548 640 PF12796.7 Ank_2 Repeat 1 82 83 45.3 9.9e-12 1 CL0465
Cotton_A_20422_CDS 647 703 643 730 PF12796.7 Ank_2 Repeat 32 82 83 38.5 1.3e-09 1 CL0465
Cotton_A_20422_CDS 819 880 818 880 PF11834.8 KHA Family 2 67 67 69.7 1.6e-19 1 No_clan
Cotton_A_10274_CDS 132 191 131 191 PF13855.6 LRR_8 Repeat 2 61 61 43.9 1.4e-11 1 CL0022
Cotton_A_10274_CDS 246 301 245 301 PF13855.6 LRR_8 Repeat 6 61 61 32.4 5.5e-08 1 CL0022
Cotton_A_10274_CDS 466 638 465 644 PF00069.25 Pkinase Domain 2 168 264 109.2 2.2e-31 1 CL0016
Cotton_A_35862_CDS 81 197 80 198 PF00861.22 Ribosomal_L18p Family 2 115 116 33.9 3.3e-08 1 CL0267
Cotton_A_12208_CDS 32 192 32 192 PF01554.18 MatE Family 1 161 161 105.6 2e-30 1 CL0222
Cotton_A_12208_CDS 253 415 253 416 PF01554.18 MatE Family 1 160 161 108.3 3e-31 1 CL0222
Cotton_A_01262_CDS 26 134 26 137 PF00072.24 Response_reg Domain 1 109 112 78.9 3.1e-22 1 CL0304
Cotton_A_37545_CDS 158 184 156 184 PF01535.20 PPR Family 5 31 31 12.2 0.18 1 CL0020
Cotton_A_37545_CDS 229 253 226 254 PF01535.20 PPR Family 4 28 31 10.3 0.67 1 CL0020
Cotton_A_37545_CDS 259 307 258 307 PF13041.6 PPR_2 Repeat 2 50 50 43.0 3.8e-11 1 CL0020
Cotton_A_37545_CDS 333 360 331 361 PF01535.20 PPR Family 3 30 31 11.6 0.27 1 CL0020
Cotton_A_37545_CDS 363 412 363 412 PF13041.6 PPR_2 Repeat 1 50 50 63.4 1.6e-17 1 CL0020
Cotton_A_37545_CDS 430 461 429 462 PF12854.7 PPR_1 Repeat 2 33 34 35.8 4.7e-09 1 CL0020
Cotton_A_37545_CDS 468 517 468 517 PF13041.6 PPR_2 Repeat 1 50 50 69.2 2.6e-19 1 CL0020
Cotton_A_37545_CDS 538 587 538 587 PF13041.6 PPR_2 Repeat 1 50 50 71.2 5.8e-20 1 CL0020
Cotton_A_37545_CDS 609 654 608 657 PF13041.6 PPR_2 Repeat 2 47 50 39.3 5.3e-10 1 CL0020
Cotton_A_37545_CDS 678 727 678 727 PF13041.6 PPR_2 Repeat 1 50 50 52.0 6.1e-14 1 CL0020
Cotton_A_37545_CDS 751 775 751 778 PF01535.20 PPR Family 1 25 31 12.1 0.18 1 CL0020
Cotton_A_37545_CDS 783 831 782 831 PF13041.6 PPR_2 Repeat 2 50 50 53.3 2.3e-14 1 CL0020
Cotton_A_37545_CDS 852 898 852 899 PF13041.6 PPR_2 Repeat 1 47 50 45.9 4.8e-12 1 CL0020
Cotton_A_40153_CDS 6 30 4 36 PF12854.7 PPR_1 Repeat 3 27 34 30.0 3e-07 1 CL0020
Cotton_A_40153_CDS 39 72 39 72 PF12854.7 PPR_1 Repeat 1 34 34 59.7 1.5e-16 1 CL0020
Cotton_A_40153_CDS 78 126 78 126 PF13041.6 PPR_2 Repeat 1 49 50 57.2 1.4e-15 1 CL0020
Cotton_A_40153_CDS 155 197 154 197 PF13041.6 PPR_2 Repeat 8 50 50 42.3 6.5e-11 1 CL0020
Cotton_A_29036_CDS 96 526 96 526 PF00854.21 PTR2 Family 1 395 395 436.0 1.1e-130 1 CL0015
Cotton_A_35569_CDS 16 222 15 222 PF01015.18 Ribosomal_S3Ae Family 2 202 202 315.8 1e-94 1 No_clan
Cotton_A_28169_CDS 39 304 39 304 PF17285.2 PRMT5_TIM Domain 1 256 256 260.3 1.5e-77 1 CL0036
Cotton_A_28169_CDS 310 479 309 479 PF05185.16 PRMT5 Domain 2 173 173 240.0 1.3e-71 1 CL0063
Cotton_A_28169_CDS 482 648 482 648 PF17286.2 PRMT5_C Domain 1 177 177 177.2 2.6e-52 1 No_clan
Cotton_A_03036_CDS 8 26 5 27 PF11416.8 Syntaxin-5_N Family 4 22 23 21.0 0.00014 1 No_clan
Cotton_A_03036_CDS 283 335 283 335 PF05739.19 SNARE Family 1 53 53 58.6 4.3e-16 1 No_clan
Cotton_A_31483_CDS 84 211 76 212 PF00637.20 Clathrin Family 13 142 143 80.1 1.4e-22 1 CL0020
Cotton_A_31483_CDS 280 344 279 344 PF00637.20 Clathrin Family 81 143 143 35.9 6.2e-09 1 CL0020
Cotton_A_30839_CDS 373 575 372 575 PF08696.11 Dna2 Family 2 203 203 204.6 1.4e-60 1 CL0236
Cotton_A_30839_CDS 912 1002 911 1014 PF13086.6 AAA_11 Domain 2 111 261 55.0 9.9e-15 1 CL0023
Cotton_A_30839_CDS 1015 1079 1003 1080 PF13086.6 AAA_11 Domain 193 260 261 57.0 2.5e-15 1 CL0023
Cotton_A_30839_CDS 1089 1286 1087 1288 PF13087.6 AAA_12 Domain 3 197 199 167.3 3.1e-49 1 CL0023
Cotton_A_09404_CDS 1 144 1 145 PF01554.18 MatE Family 17 160 161 100.5 7.3e-29 1 CL0222
Cotton_A_09404_CDS 206 367 206 368 PF01554.18 MatE Family 1 159 161 120.8 4.2e-35 1 CL0222
Cotton_A_35583_CDS 14 138 14 138 PF02365.15 NAM Family 1 126 126 134.6 3.5e-39 1 No_clan
Cotton_A_24679_CDS 9 61 9 61 PF14570.6 zf-RING_4 Domain 1 48 48 72.3 2e-20 1 CL0229
Cotton_A_24679_CDS 112 190 112 190 PF00076.22 RRM_1 Domain 1 70 70 26.9 3e-06 1 CL0221
Cotton_A_38220_CDS 10 112 9 112 PF14368.6 LTP_2 Family 2 97 97 47.8 1.1e-12 1 CL0482
Cotton_A_21972_CDS 113 169 106 177 PF10539.9 Dev_Cell_Death Domain 55 115 127 51.8 6.9e-14 1 No_clan
Cotton_A_31799_CDS 7 139 7 173 PF03986.13 Autophagy_N Domain 1 128 137 134.7 1.9e-39 1 No_clan
Cotton_A_31799_CDS 199 259 199 259 PF03987.15 Autophagy_act_C Domain 1 55 55 65.4 5.1e-18 1 CL0097
Cotton_A_31799_CDS 280 304 280 304 PF10381.9 Autophagy_C Domain 1 25 25 55.6 2.7e-15 1 No_clan
Cotton_A_20409_CDS 51 77 51 78 PF05678.14 VQ Motif 1 27 28 38.8 4.6e-10 1 No_clan
Cotton_A_08333_CDS 151 263 150 263 PF14288.6 FKS1_dom1 Family 2 129 129 129.4 9.9e-38 1 No_clan
Cotton_A_08333_CDS 859 1534 858 1585 PF02364.15 Glucan_synthase Family 2 732 819 800.3 2.1e-240 1 CL0111
Cotton_A_07680_CDS 3 213 3 214 PF00091.25 Tubulin Domain 1 196 197 226.0 4.9e-67 1 CL0566
Cotton_A_07680_CDS 263 392 263 393 PF03953.17 Tubulin_C Domain 1 125 126 170.8 1.2e-50 1 CL0442
Cotton_A_23201_CDS 29 77 14 78 PF05498.11 RALF Family 16 64 65 41.9 1.5e-10 1 No_clan
Cotton_A_27252_CDS 33 237 33 237 PF07847.12 PCO_ADO Family 1 201 201 247.6 7.3e-74 1 CL0029
Cotton_A_24961_CDS 55 307 55 308 PF09459.10 EB_dh Domain 1 248 249 92.3 4.6e-26 1 CL0159
Cotton_A_25970_CDS 15 193 15 193 PF14215.6 bHLH-MYC_N Family 1 175 175 175.6 1.1e-51 1 CL0161
Cotton_A_25970_CDS 431 478 430 478 PF00010.26 HLH Domain 3 53 53 46.8 2.1e-12 1 No_clan
Cotton_A_13786_CDS 106 124 104 124 PF00612.27 IQ Motif 3 21 21 26.9 2.4e-06 1 CL0220
Cotton_A_13786_CDS 316 392 280 410 PF13178.6 DUF4005 Family 5 76 93 41.2 2e-10 1 No_clan
Cotton_A_31603_CDS 95 266 95 266 PF00270.29 DEAD Domain 1 176 176 150.2 4.9e-44 1 CL0023
Cotton_A_31603_CDS 303 412 302 413 PF00271.31 Helicase_C Family 2 110 111 82.0 3.7e-23 1 CL0023
Cotton_A_31603_CDS 457 513 453 513 PF13959.6 DUF4217 Domain 5 61 61 50.5 1.8e-13 1 No_clan
Cotton_A_29640_CDS 19 53 18 54 PF13570.6 PQQ_3 Repeat 3 37 40 22.6 0.0001 1 CL0186
Cotton_A_19586_CDS 44 326 43 333 PF00676.20 E1_dh Family 2 283 300 315.2 3.3e-94 1 CL0254
Cotton_A_26363_CDS 1 60 1 64 PF00067.22 p450 Domain 402 459 463 37.2 1.5e-09 1 No_clan
Cotton_A_16752_CDS 51 105 50 105 PF14416.6 PMR5N Domain 2 53 53 55.5 5.2e-15 1 No_clan
Cotton_A_16752_CDS 107 247 106 273 PF13839.6 PC-Esterase Family 2 138 283 111.6 5.5e-32 1 CL0264
Cotton_A_32110_CDS 44 124 44 141 PF01627.23 Hpt Family 1 80 85 46.4 3.6e-12 1 No_clan
Cotton_A_07523_CDS 74 176 74 177 PF00044.24 Gp_dh_N Domain 1 100 101 107.5 3.7e-31 1 CL0063
Cotton_A_07523_CDS 230 386 230 386 PF02800.20 Gp_dh_C Domain 1 158 158 225.3 2.7e-67 1 CL0139
Cotton_A_26621_CDS 23 64 22 65 PF08263.12 LRRNT_2 Family 3 40 41 29.6 6.2e-07 1 No_clan
Cotton_A_26621_CDS 116 175 115 176 PF13855.6 LRR_8 Repeat 2 60 61 32.3 6.3e-08 1 CL0022
Cotton_A_26621_CDS 336 612 333 614 PF00069.25 Pkinase Domain 5 260 264 94.8 5.6e-27 1 CL0016
Cotton_A_38037_CDS 447 579 447 580 PF00004.29 AAA Domain 1 131 132 144.1 3.1e-42 1 CL0023
Cotton_A_38037_CDS 602 644 602 646 PF17862.1 AAA_lid_3 Domain 1 43 45 42.6 3.7e-11 1 CL0671
Cotton_A_38037_CDS 663 833 659 836 PF01434.18 Peptidase_M41 Domain 5 188 191 51.8 8.7e-14 1 CL0126
Cotton_A_02859_CDS 36 172 36 172 PF01138.21 RNase_PH Domain 1 132 132 81.6 7.1e-23 1 CL0329
Cotton_A_02859_CDS 201 266 201 268 PF03725.15 RNase_PH_C Domain 1 65 67 41.1 1.3e-10 1 No_clan
Cotton_A_10243_CDS 19 77 17 77 PF00046.29 Homeodomain Domain 3 57 57 59.8 1.7e-16 1 CL0123
Cotton_A_10243_CDS 169 376 168 378 PF01852.19 START Domain 2 207 209 174.6 1.7e-51 1 CL0209
Cotton_A_10243_CDS 705 852 704 852 PF08670.11 MEKHLA Domain 2 143 143 168.6 7.1e-50 1 CL0183
Cotton_A_23711_CDS 2 23 1 26 PF01535.20 PPR Family 6 27 31 15.1 0.021 1 CL0020
Cotton_A_23711_CDS 28 58 28 58 PF01535.20 PPR Family 1 31 31 28.7 9.1e-07 1 CL0020
Cotton_A_23711_CDS 59 87 59 89 PF01535.20 PPR Family 1 29 31 26.8 3.8e-06 1 CL0020
Cotton_A_23711_CDS 91 120 90 120 PF01535.20 PPR Family 2 31 31 34.3 1.6e-08 1 CL0020
Cotton_A_23711_CDS 121 151 121 151 PF01535.20 PPR Family 1 31 31 16.7 0.0061 1 CL0020
Cotton_A_23711_CDS 220 266 219 268 PF13041.6 PPR_2 Repeat 2 48 50 30.9 2.3e-07 1 CL0020
Cotton_A_23711_CDS 320 368 320 369 PF13041.6 PPR_2 Repeat 1 49 50 35.0 1.2e-08 1 CL0020
Cotton_A_23711_CDS 396 421 395 423 PF01535.20 PPR Family 3 28 31 18.2 0.002 1 CL0020
Cotton_A_23711_CDS 495 618 494 618 PF14432.6 DYW_deaminase Family 2 127 127 137.9 1.6e-40 1 CL0109
Cotton_A_00584_CDS 31 135 31 135 PF05938.11 Self-incomp_S1 Family 1 104 104 101.0 4.6e-29 1 No_clan
Cotton_A_18734_CDS 27 68 26 68 PF08263.12 LRRNT_2 Family 3 41 41 24.6 2.3e-05 1 No_clan
Cotton_A_18734_CDS 242 264 242 264 PF00560.33 LRR_1 Repeat 1 23 23 10.2 0.99 1 CL0022
Cotton_A_18734_CDS 266 325 265 325 PF13855.6 LRR_8 Repeat 2 61 61 31.2 1.4e-07 1 CL0022
Cotton_A_14224_CDS 108 210 107 221 PF00572.18 Ribosomal_L13 Family 2 104 125 133.6 4.2e-39 1 No_clan
Cotton_A_17631_CDS 32 86 31 92 PF01657.17 Stress-antifung Family 2 56 95 29.4 9.2e-07 1 No_clan
Cotton_A_17631_CDS 114 213 113 214 PF01657.17 Stress-antifung Family 2 94 95 51.9 9e-14 1 No_clan
Cotton_A_25548_CDS 56 78 56 78 PF00096.26 zf-C2H2 Domain 1 23 23 17.8 0.0034 1 CL0361
Cotton_A_16130_CDS 306 558 305 558 PF00069.25 Pkinase Domain 2 264 264 228.9 6.5e-68 1 CL0016
Cotton_A_31753_CDS 146 214 143 215 PF02325.17 YGGT Family 4 68 69 60.4 1.7e-16 1 No_clan
Cotton_A_26550_CDS 43 79 43 83 PF07645.15 EGF_CA Domain 1 38 42 31.4 1.6e-07 1 CL0001
Cotton_A_26550_CDS 174 375 174 419 PF00069.25 Pkinase Domain 1 197 264 126.1 1.5e-36 1 CL0016
Cotton_A_19121_CDS 45 108 45 112 PF00076.22 RRM_1 Domain 1 63 70 76.4 1.1e-21 1 CL0221
Cotton_A_31158_CDS 20 87 7 96 PF03321.13 GH3 Family 41 106 527 58.2 7e-16 1 CL0378
Cotton_A_33367_CDS 14 206 14 206 PF14215.6 bHLH-MYC_N Family 1 175 175 116.0 2.2e-33 1 CL0161
Cotton_A_32027_CDS 1 115 1 122 PF03321.13 GH3 Family 5 119 527 123.1 1.5e-35 1 CL0378
Cotton_A_28041_CDS 59 129 59 141 PF07802.11 GCK Domain 1 71 74 112.7 7.8e-33 1 No_clan
Cotton_A_00063_CDS 16 213 14 214 PF17781.1 RPN1_RPN2_N Domain 106 308 309 232.0 1e-68 1 No_clan
Cotton_A_00063_CDS 310 345 310 346 PF01851.22 PC_rep Repeat 1 34 35 27.6 2.6e-06 1 CL0020
Cotton_A_38257_CDS 143 210 142 231 PF01926.23 MMR_HSR1 Family 2 58 114 47.2 2e-12 1 CL0023
Cotton_A_21998_CDS 79 131 78 131 PF14416.6 PMR5N Domain 2 53 53 78.3 3.9e-22 1 No_clan
Cotton_A_21998_CDS 132 417 132 418 PF13839.6 PC-Esterase Family 1 282 283 308.5 5.5e-92 1 CL0264
Cotton_A_34976_CDS 100 145 98 146 PF13041.6 PPR_2 Repeat 4 49 50 33.3 4.2e-08 1 CL0020
Cotton_A_34976_CDS 198 247 198 247 PF13041.6 PPR_2 Repeat 1 50 50 46.4 3.2e-12 1 CL0020
Cotton_A_34976_CDS 273 300 271 301 PF01535.20 PPR Family 3 30 31 15.2 0.019 1 CL0020
Cotton_A_34976_CDS 302 330 302 332 PF01535.20 PPR Family 1 29 31 17.0 0.005 1 CL0020
Cotton_A_34976_CDS 375 399 372 402 PF01535.20 PPR Family 4 28 31 9.6 1.1 1 CL0020
Cotton_A_34976_CDS 400 431 400 433 PF13041.6 PPR_2 Repeat 1 32 50 31.5 1.5e-07 1 CL0020
Cotton_A_34976_CDS 432 477 431 479 PF13041.6 PPR_2 Repeat 2 47 50 39.7 4.2e-10 1 CL0020
Cotton_A_34976_CDS 533 580 532 581 PF13041.6 PPR_2 Repeat 2 49 50 32.4 8e-08 1 CL0020
Cotton_A_34976_CDS 606 632 606 634 PF01535.20 PPR Family 1 27 31 19.0 0.0012 1 CL0020
Cotton_A_31259_CDS 73 117 73 118 PF00249.31 Myb_DNA-binding Domain 1 45 46 44.4 1.4e-11 1 CL0123
Cotton_A_18599_CDS 51 99 49 100 PF00847.20 AP2 Domain 3 53 54 44.3 1.5e-11 1 CL0081
Cotton_A_12429_CDS 101 178 100 179 PF01282.19 Ribosomal_S24e Family 2 78 79 122.8 3.9e-36 1 No_clan
Cotton_A_33564_CDS 153 199 153 202 PF13964.6 Kelch_6 Repeat 1 47 50 32.9 5.4e-08 1 CL0186
Cotton_A_33564_CDS 202 246 201 247 PF01344.25 Kelch_1 Repeat 2 45 46 36.0 3.7e-09 1 CL0186
Cotton_A_21501_CDS 11 163 10 172 PF04051.16 TRAPP Family 2 132 146 151.7 1.1e-44 1 CL0210
Cotton_A_02717_CDS 31 760 25 762 PF05691.12 Raffinose_syn Family 8 748 750 1118.4 0 1 CL0058
Cotton_A_02819_CDS 108 282 107 286 PF00141.23 peroxidase Domain 2 143 229 83.4 1.9e-23 1 CL0617
Cotton_A_36641_CDS 8 27 7 29 PF00796.18 PSI_8 Family 2 21 25 35.8 5.1e-09 1 No_clan
Cotton_A_30423_CDS 18 103 17 104 PF00855.17 PWWP Domain 2 95 96 59.3 3.7e-16 1 CL0049
Cotton_A_30423_CDS 894 960 894 961 PF04818.13 CTD_bind Family 1 62 63 30.7 4.3e-07 1 No_clan
Cotton_A_19955_CDS 77 192 68 195 PF00179.26 UQ_con Domain 20 137 140 159.1 4.9e-47 1 CL0208
Cotton_A_26528_CDS 30 69 29 69 PF08263.12 LRRNT_2 Family 2 41 41 29.6 6.2e-07 1 No_clan
Cotton_A_26528_CDS 219 279 219 279 PF13855.6 LRR_8 Repeat 1 61 61 27.5 1.9e-06 1 CL0022
Cotton_A_26528_CDS 363 423 363 423 PF13855.6 LRR_8 Repeat 1 61 61 33.2 3.3e-08 1 CL0022
Cotton_A_26528_CDS 532 554 532 554 PF00560.33 LRR_1 Repeat 1 23 23 9.5 1.7 1 CL0022
Cotton_A_26528_CDS 628 687 627 687 PF13855.6 LRR_8 Repeat 2 61 61 40.7 1.5e-10 1 CL0022
Cotton_A_26528_CDS 808 1008 803 1051 PF00069.25 Pkinase Domain 6 198 264 144.4 4.1e-42 1 CL0016
Cotton_A_30496_CDS 121 327 119 327 PF00566.18 RabGAP-TBC Family 3 215 215 191.2 1.8e-56 1 No_clan
Cotton_A_15825_CDS 1 60 1 61 PF01486.17 K-box Family 33 92 93 63.1 2e-17 1 No_clan
Cotton_A_10539_CDS 41 66 41 67 PF13912.6 zf-C2H2_6 Domain 1 26 27 45.5 5.1e-12 1 CL0361
Cotton_A_10539_CDS 84 107 83 108 PF13912.6 zf-C2H2_6 Domain 2 25 27 38.6 7.1e-10 1 CL0361
Cotton_A_13231_CDS 104 202 104 202 PF01250.17 Ribosomal_S6 Domain 1 90 90 67.2 1.2e-18 1 No_clan
Cotton_A_05618_CDS 66 108 64 108 PF12023.8 DUF3511 Family 3 45 45 73.9 6.4e-21 1 No_clan
Cotton_A_39608_CDS 1 46 1 47 PF01657.17 Stress-antifung Family 53 94 95 27.7 3.1e-06 1 No_clan
Cotton_A_17387_CDS 74 244 73 245 PF01145.25 Band_7 Family 2 177 178 102.6 2.3e-29 1 CL0433
Cotton_A_17387_CDS 294 353 293 355 PF16200.5 Band_7_C Family 2 61 63 85.3 2.1e-24 1 No_clan
Cotton_A_35958_CDS 2 49 1 59 PF13456.6 RVT_3 Domain 48 94 124 30.5 2.6e-07 1 CL0219
Cotton_A_30279_CDS 17 105 13 105 PF13650.6 Asp_protease_2 Domain 5 90 90 26.4 7.9e-06 1 CL0129
Cotton_A_25898_CDS 18 74 16 77 PF05030.12 SSXT Family 3 59 62 78.8 1.6e-22 1 No_clan
Cotton_A_31871_CDS 96 568 95 569 PF00982.21 Glyco_transf_20 Family 2 473 474 613.3 2.6e-184 1 CL0113
Cotton_A_31871_CDS 614 824 613 852 PF02358.16 Trehalose_PPase Family 2 206 233 184.1 2.2e-54 1 CL0137
Cotton_A_04756_CDS 98 300 97 310 PF03151.16 TPT Family 2 209 290 269.6 3.2e-80 1 CL0184
Cotton_A_31114_CDS 181 363 181 365 PF00005.27 ABC_tran Domain 1 135 137 55.3 9.7e-15 1 CL0023
Cotton_A_31114_CDS 517 729 516 729 PF01061.24 ABC2_membrane Family 2 210 210 141.9 1.8e-41 1 CL0181
Cotton_A_31114_CDS 734 795 734 796 PF08370.11 PDR_assoc Family 1 63 65 86.7 6.2e-25 1 No_clan
Cotton_A_31114_CDS 875 1026 874 1026 PF00005.27 ABC_tran Domain 2 137 137 60.6 2.3e-16 1 CL0023
Cotton_A_31114_CDS 1172 1385 1171 1385 PF01061.24 ABC2_membrane Family 2 210 210 182.1 8.7e-54 1 CL0181
Cotton_A_23698_CDS 61 307 60 307 PF00109.26 ketoacyl-synt Domain 2 253 253 201.4 1.8e-59 1 CL0046
Cotton_A_19495_CDS 5 194 2 194 PF06045.11 Rhamnogal_lyase Family 29 213 213 302.0 1.9e-90 1 CL0103
Cotton_A_19495_CDS 348 420 347 421 PF14686.6 fn3_3 Domain 2 74 75 94.8 1.9e-27 1 CL0287
Cotton_A_19495_CDS 434 622 434 622 PF14683.6 CBM-like Domain 1 165 165 182.1 6.9e-54 1 CL0202
Cotton_A_11289_CDS 126 289 125 291 PF01764.25 Lipase_3 Family 2 139 142 108.8 2e-31 1 CL0028
Cotton_A_16559_CDS 464 499 459 499 PF00400.32 WD40 Repeat 6 38 38 20.3 0.00076 1 CL0186
Cotton_A_16559_CDS 924 958 920 958 PF00400.32 WD40 Repeat 5 38 38 16.1 0.015 1 CL0186
Cotton_A_05703_CDS 224 308 217 348 PF08268.12 FBA_3 Domain 8 92 128 24.3 2.4e-05 1 CL0162
Cotton_A_01551_CDS 42 353 42 353 PF01074.22 Glyco_hydro_38N Domain 1 289 289 308.9 3.3e-92 1 CL0158
Cotton_A_01551_CDS 358 450 358 450 PF09261.11 Alpha-mann_mid Domain 1 96 96 74.3 6.4e-21 1 CL0599
Cotton_A_01551_CDS 601 709 601 714 PF07748.13 Glyco_hydro_38C Domain 1 112 214 65.3 7.8e-18 1 CL0103
Cotton_A_01551_CDS 711 776 709 776 PF07748.13 Glyco_hydro_38C Domain 148 214 214 62.6 5.5e-17 1 CL0103
Cotton_A_01551_CDS 858 964 858 964 PF17677.1 Glyco_hydro38C2 Domain 1 69 69 44.2 1.5e-11 1 CL0369
Cotton_A_15534_CDS 3 67 2 68 PF05493.13 ATP_synt_H Family 2 61 62 76.4 1.8e-21 1 No_clan
Cotton_A_28935_CDS 86 149 79 149 PF00690.26 Cation_ATPase_N Domain 8 69 69 45.2 5.4e-12 1 No_clan
Cotton_A_28935_CDS 202 388 193 388 PF00122.20 E1-E2_ATPase Family 8 181 181 122.1 1.8e-35 1 No_clan
Cotton_A_28935_CDS 404 707 404 707 PF00702.26 Hydrolase Domain 1 210 210 53.5 3.8e-14 1 CL0137
Cotton_A_28935_CDS 777 943 776 944 PF00689.21 Cation_ATPase_C Family 2 181 182 41.3 1.3e-10 1 No_clan
Cotton_A_25838_CDS 1 86 1 86 PF03514.14 GRAS Family 289 374 374 96.6 1.5e-27 1 CL0063
Cotton_A_19729_CDS 195 227 150 227 PF03765.15 CRAL_TRIO_N Domain 27 54 54 29.9 4.6e-07 1 CL0214
Cotton_A_19729_CDS 252 417 250 417 PF00650.20 CRAL_TRIO Domain 3 159 159 121.3 2.9e-35 1 CL0512
Cotton_A_16001_CDS 26 197 26 197 PF00197.18 Kunitz_legume Domain 1 175 175 194.3 1.6e-57 1 CL0066
Cotton_A_31364_CDS 19 77 17 83 PF00076.22 RRM_1 Domain 3 64 70 32.3 6.6e-08 1 CL0221
Cotton_A_06807_CDS 41 437 41 437 PF03514.14 GRAS Family 1 374 374 410.5 6.1e-123 1 CL0063
Cotton_A_13751_CDS 58 83 36 83 PF03765.15 CRAL_TRIO_N Domain 29 54 54 25.5 1.1e-05 1 CL0214
Cotton_A_13751_CDS 105 257 102 257 PF00650.20 CRAL_TRIO Domain 4 159 159 130.3 5e-38 1 CL0512
Cotton_A_37502_CDS 55 153 55 153 PF04749.17 PLAC8 Family 1 99 99 96.6 1.4e-27 1 No_clan
Cotton_A_23921_CDS 363 498 363 498 PF00004.29 AAA Domain 1 132 132 136.2 8.7e-40 1 CL0023
Cotton_A_23921_CDS 526 562 525 565 PF17862.1 AAA_lid_3 Domain 6 42 45 40.8 1.4e-10 1 CL0671
Cotton_A_23921_CDS 853 924 850 932 PF00439.25 Bromodomain Domain 4 75 84 50.8 1.3e-13 1 No_clan
Cotton_A_02823_CDS 42 163 40 163 PF08240.12 ADH_N Domain 3 109 109 50.7 1.4e-13 1 CL0296
Cotton_A_02823_CDS 206 327 205 339 PF00107.26 ADH_zinc_N Family 2 118 130 76.5 1.8e-21 1 CL0063
Cotton_A_01632_CDS 47 101 46 101 PF00046.29 Homeodomain Domain 3 57 57 60.1 1.4e-16 1 CL0123
Cotton_A_08060_CDS 64 237 64 237 PF10602.9 RPN7 Family 1 174 174 196.7 2.4e-58 1 CL0020
Cotton_A_08060_CDS 253 355 252 356 PF01399.27 PCI Domain 2 104 105 57.4 1.7e-15 1 CL0123
Cotton_A_15384_CDS 56 188 55 188 PF02469.22 Fasciclin Domain 2 128 128 72.2 4.4e-20 1 No_clan
Cotton_A_15384_CDS 294 414 280 414 PF02469.22 Fasciclin Domain 14 128 128 32.0 1.2e-07 1 No_clan
Cotton_A_00417_CDS 242 604 242 604 PF03081.15 Exo70 Family 1 376 376 343.6 1.4e-102 1 CL0295
Cotton_A_01221_CDS 463 1044 463 1045 PF05183.12 RdRP Family 1 585 586 596.2 7.2e-179 1 No_clan
Cotton_A_01221_CDS 1312 1385 1271 1396 PF00168.30 C2 Domain 21 92 103 40.6 2.4e-10 1 CL0154
Cotton_A_01221_CDS 1594 1631 1594 1631 PF00614.22 PLDc Family 1 28 28 37.5 1.7e-09 1 CL0479
Cotton_A_01221_CDS 1922 1948 1921 1948 PF00614.22 PLDc Family 2 28 28 30.8 2.1e-07 1 CL0479
Cotton_A_01221_CDS 1994 2065 1993 2065 PF12357.8 PLD_C Family 2 72 72 92.2 1.4e-26 1 No_clan
Cotton_A_01143_CDS 183 290 182 296 PF03109.16 ABC1 Family 2 110 119 98.6 2.6e-28 1 CL0016
Cotton_A_01143_CDS 688 898 660 898 PF00481.21 PP2C Family 34 258 258 228.6 9.7e-68 1 CL0238
Cotton_A_27049_CDS 891 1018 884 1019 PF00271.31 Helicase_C Family 8 110 111 47.9 1.4e-12 1 CL0023
Cotton_A_27049_CDS 1083 1118 1083 1124 PF04408.23 HA2 Domain 1 36 108 24.0 3.5e-05 1 No_clan
Cotton_A_26316_CDS 9 50 6 50 PF03107.16 C1_2 Domain 4 47 47 30.4 3.6e-07 1 CL0006
Cotton_A_26316_CDS 60 100 59 100 PF03107.16 C1_2 Domain 2 47 47 29.9 4.9e-07 1 CL0006
Cotton_A_26316_CDS 175 215 174 216 PF03107.16 C1_2 Domain 2 46 47 31.0 2.3e-07 1 CL0006
Cotton_A_26316_CDS 233 284 232 284 PF03107.16 C1_2 Domain 2 47 47 31.0 2.3e-07 1 CL0006
Cotton_A_26316_CDS 293 342 293 342 PF03107.16 C1_2 Domain 1 47 47 35.7 7.8e-09 1 CL0006
Cotton_A_26316_CDS 355 394 352 395 PF03107.16 C1_2 Domain 5 46 47 26.7 5.3e-06 1 CL0006
Cotton_A_34127_CDS 89 133 88 133 PF13639.6 zf-RING_2 Domain 2 44 44 48.4 8.9e-13 1 CL0229
Cotton_A_31253_CDS 157 275 156 278 PF01794.19 Ferric_reduct Family 2 123 125 60.7 1.4e-16 1 CL0328
Cotton_A_31253_CDS 312 381 307 387 PF08022.12 FAD_binding_8 Domain 6 76 109 50.2 2.3e-13 1 CL0076
Cotton_A_31253_CDS 380 645 380 645 PF08030.12 NAD_binding_6 Domain 1 156 156 103.4 1.3e-29 1 CL0091
Cotton_A_33220_CDS 63 84 63 85 PF02493.20 MORN Repeat 1 22 23 12.0 0.15 1 CL0251
Cotton_A_33220_CDS 86 108 86 108 PF02493.20 MORN Repeat 1 23 23 28.0 1.3e-06 1 CL0251
Cotton_A_33220_CDS 109 128 109 131 PF02493.20 MORN Repeat 1 20 23 18.5 0.0013 1 CL0251
Cotton_A_33220_CDS 132 154 132 154 PF02493.20 MORN Repeat 1 23 23 19.6 0.00059 1 CL0251
Cotton_A_33220_CDS 155 177 155 177 PF02493.20 MORN Repeat 1 23 23 24.6 1.5e-05 1 CL0251
Cotton_A_33220_CDS 178 199 178 200 PF02493.20 MORN Repeat 1 22 23 21.1 0.00019 1 CL0251
Cotton_A_33220_CDS 201 222 201 223 PF02493.20 MORN Repeat 1 22 23 25.9 5.8e-06 1 CL0251
Cotton_A_33220_CDS 224 245 224 245 PF02493.20 MORN Repeat 1 23 23 17.5 0.0027 1 CL0251
Cotton_A_33220_CDS 494 664 493 721 PF01504.18 PIP5K Family 2 176 274 233.4 2.7e-69 1 CL0016
Cotton_A_28350_CDS 45 115 44 115 PF15044.6 CLU_N Family 2 79 79 29.4 7.4e-07 1 No_clan
Cotton_A_28350_CDS 707 849 706 850 PF12807.7 eIF3_p135 Family 2 175 176 82.7 3.2e-23 1 No_clan
Cotton_A_28350_CDS 919 989 918 991 PF13424.6 TPR_12 Repeat 2 72 77 48.7 6.9e-13 1 CL0020
Cotton_A_28350_CDS 1003 1077 1002 1078 PF13424.6 TPR_12 Repeat 2 76 77 47.0 2.4e-12 1 CL0020
Cotton_A_27003_CDS 30 110 30 110 PF02298.17 Cu_bind_like Domain 1 84 84 92.5 1.2e-26 1 CL0026
Cotton_A_39858_CDS 28 207 27 208 PF00722.21 Glyco_hydro_16 Domain 2 176 177 204.3 9.5e-61 1 CL0004
Cotton_A_39858_CDS 261 310 260 311 PF00847.20 AP2 Domain 2 53 54 32.0 1.1e-07 1 CL0081
Cotton_A_36314_CDS 39 85 39 85 PF00249.31 Myb_DNA-binding Domain 1 46 46 52.8 3.2e-14 1 CL0123
Cotton_A_36314_CDS 91 137 91 137 PF00249.31 Myb_DNA-binding Domain 1 46 46 68.1 5.5e-19 1 CL0123
Cotton_A_36314_CDS 143 185 143 187 PF00249.31 Myb_DNA-binding Domain 1 43 46 49.4 3.9e-13 1 CL0123
Cotton_A_10288_CDS 97 170 96 173 PF01253.22 SUI1 Domain 2 73 77 72.6 2.9e-20 1 No_clan
Cotton_A_30852_CDS 1 86 1 93 PF00361.20 Proton_antipo_M Family 205 291 293 63.9 1.3e-17 1 CL0425
Cotton_A_02789_CDS 122 274 106 296 PF00342.19 PGI Domain 28 180 486 66.0 2.4e-18 1 CL0067
Cotton_A_02789_CDS 312 428 304 435 PF00342.19 PGI Domain 239 357 486 65.9 2.5e-18 1 CL0067
Cotton_A_02789_CDS 459 519 452 534 PF00342.19 PGI Domain 407 467 486 38.9 4.1e-10 1 CL0067
Cotton_A_25525_CDS 73 123 72 123 PF00249.31 Myb_DNA-binding Domain 2 46 46 26.5 5.3e-06 1 CL0123
Cotton_A_01737_CDS 33 146 32 146 PF02771.16 Acyl-CoA_dh_N Domain 2 113 113 124.0 4.3e-36 1 CL0544
Cotton_A_01737_CDS 150 245 150 245 PF02770.19 Acyl-CoA_dh_M Domain 1 97 97 83.2 1.2e-23 1 No_clan
Cotton_A_01737_CDS 257 423 257 424 PF00441.24 Acyl-CoA_dh_1 Domain 1 149 150 128.8 1.8e-37 1 CL0087
Cotton_A_15802_CDS 5 72 3 77 PF03060.15 NMO Domain 6 71 331 50.5 1.9e-13 1 CL0036
Cotton_A_15802_CDS 76 319 70 320 PF03060.15 NMO Domain 102 330 331 153.3 1e-44 1 CL0036
Cotton_A_14713_CDS 893 934 893 934 PF12765.7 Cohesin_HEAT Family 1 42 42 42.3 6.8e-11 1 CL0020
Cotton_A_02586_CDS 73 331 73 331 PF00069.25 Pkinase Domain 1 264 264 248.7 6.3e-74 1 CL0016
Cotton_A_02586_CDS 379 439 376 440 PF13499.6 EF-hand_7 Domain 4 70 71 49.5 4.4e-13 1 CL0220
Cotton_A_02586_CDS 448 511 448 511 PF13499.6 EF-hand_7 Domain 1 71 71 56.9 2.1e-15 1 CL0220
Cotton_A_00727_CDS 49 71 30 73 PF14364.6 DUF4408 Family 7 29 33 28.6 8.8e-07 1 No_clan
Cotton_A_26367_CDS 360 474 358 475 PF01624.20 MutS_I Domain 3 112 113 108.9 1.5e-31 1 No_clan
Cotton_A_26367_CDS 484 626 484 634 PF05188.17 MutS_II Domain 1 127 137 40.5 3e-10 1 No_clan
Cotton_A_26367_CDS 660 976 660 976 PF05192.18 MutS_III Domain 1 191 191 119.7 1.8e-34 1 No_clan
Cotton_A_26367_CDS 845 935 845 936 PF05190.18 MutS_IV Domain 1 91 92 54.0 1.5e-14 1 No_clan
Cotton_A_26367_CDS 1040 1230 1039 1231 PF00488.21 MutS_V Domain 2 187 188 230.9 1.2e-68 1 CL0023
Cotton_A_23574_CDS 103 215 103 216 PF03479.15 DUF296 Domain 1 106 107 100.0 8.9e-29 1 CL0615
Cotton_A_00651_CDS 7 70 6 70 PF00226.31 DnaJ Domain 2 63 63 73.8 9.1e-21 1 CL0392
Cotton_A_12674_CDS 23 342 23 343 PF00332.18 Glyco_hydro_17 Domain 1 312 313 291.4 1e-86 1 CL0058
Cotton_A_12674_CDS 369 439 368 440 PF07983.13 X8 Domain 2 75 76 71.9 5.4e-20 1 No_clan
Cotton_A_07247_CDS 24 486 24 487 PF00171.22 Aldedh Family 1 461 462 469.1 1.2e-140 1 CL0099
Cotton_A_30368_CDS 91 113 88 115 PF01535.20 PPR Family 5 27 31 13.6 0.062 1 CL0020
Cotton_A_30368_CDS 158 207 158 207 PF13041.6 PPR_2 Repeat 1 50 50 59.9 2e-16 1 CL0020
Cotton_A_30368_CDS 225 256 224 257 PF12854.7 PPR_1 Repeat 2 33 34 40.0 2.3e-10 1 CL0020
Cotton_A_30368_CDS 263 312 263 312 PF13041.6 PPR_2 Repeat 1 50 50 62.4 3.3e-17 1 CL0020
Cotton_A_30368_CDS 337 366 336 366 PF01535.20 PPR Family 2 31 31 25.9 7.3e-06 1 CL0020
Cotton_A_30368_CDS 368 417 368 417 PF13041.6 PPR_2 Repeat 1 50 50 64.9 5.5e-18 1 CL0020
Cotton_A_30368_CDS 439 487 438 487 PF13041.6 PPR_2 Repeat 2 50 50 48.5 7.4e-13 1 CL0020
Cotton_A_30368_CDS 510 557 510 559 PF13041.6 PPR_2 Repeat 1 48 50 47.3 1.8e-12 1 CL0020
Cotton_A_14689_CDS 114 257 113 258 PF05142.12 DUF702 Family 2 149 150 225.2 4.3e-67 1 No_clan
Cotton_A_34982_CDS 21 187 18 201 PF10294.9 Methyltransf_16 Family 5 163 174 100.8 6.9e-29 1 CL0063
Cotton_A_40622_CDS 92 158 92 158 PF11341.8 DUF3143 Family 1 65 65 73.6 1.2e-20 1 No_clan
Cotton_A_07977_CDS 83 272 83 273 PF03770.16 IPK Family 1 196 197 157.2 4.5e-46 1 CL0016
Cotton_A_12250_CDS 204 266 195 295 PF01841.19 Transglut_core Family 18 78 112 23.1 7.6e-05 1 CL0125
Cotton_A_12250_CDS 439 603 421 604 PF03835.15 Rad4 Domain 25 146 147 88.0 4.8e-25 1 CL0125
Cotton_A_12250_CDS 610 658 609 658 PF10403.9 BHD_1 Domain 2 51 51 58.7 3.7e-16 1 No_clan
Cotton_A_12250_CDS 662 720 662 723 PF10404.9 BHD_2 Domain 1 61 64 40.2 5e-10 1 No_clan
Cotton_A_12250_CDS 730 803 730 803 PF10405.9 BHD_3 Domain 1 76 76 88.9 2.1e-25 1 CL0123
Cotton_A_01508_CDS 54 291 54 291 PF03087.14 DUF241 Family 1 234 234 220.8 2.2e-65 1 CL0133
Cotton_A_00625_CDS 50 82 45 82 PF00400.32 WD40 Repeat 7 38 38 24.3 4e-05 1 CL0186
Cotton_A_00625_CDS 314 350 312 350 PF00400.32 WD40 Repeat 6 38 38 15.3 0.027 1 CL0186
Cotton_A_00625_CDS 356 391 354 392 PF00400.32 WD40 Repeat 3 37 38 13.4 0.11 1 CL0186
Cotton_A_04455_CDS 19 117 13 118 PF03398.14 Ist1 Family 66 163 164 95.1 4.1e-27 1 No_clan
Cotton_A_20606_CDS 11 105 11 106 PF14363.6 AAA_assoc Family 1 95 96 91.8 2.7e-26 1 No_clan
Cotton_A_14395_CDS 396 532 395 534 PF01764.25 Lipase_3 Family 2 140 142 87.3 8.1e-25 1 CL0028
Cotton_A_24808_CDS 228 523 228 523 PF03000.14 NPH3 Family 1 258 258 369.4 1e-110 1 No_clan
Cotton_A_27670_CDS 262 388 235 410 PF03141.16 Methyltransf_29 Family 115 247 506 27.2 1.4e-06 1 CL0063
Cotton_A_15838_CDS 13 278 10 278 PF07714.17 Pkinase_Tyr Domain 4 259 259 144.1 4.5e-42 1 CL0016
Cotton_A_23930_CDS 3 107 1 107 PF03641.14 Lysine_decarbox Family 30 132 132 112.5 1.5e-32 1 CL0349
Cotton_A_34874_CDS 7 68 7 74 PF00076.22 RRM_1 Domain 1 61 70 57.9 6.6e-16 1 CL0221
Cotton_A_34874_CDS 107 164 107 179 PF00076.22 RRM_1 Domain 1 57 70 58.3 5e-16 1 CL0221
Cotton_A_13294_CDS 280 336 280 336 PF06830.11 Root_cap Family 1 57 57 94.7 2.7e-27 1 No_clan
Cotton_A_10594_CDS 203 266 199 271 PF07714.17 Pkinase_Tyr Domain 5 73 259 33.2 3.2e-08 1 CL0016
Cotton_A_10594_CDS 271 339 264 387 PF00069.25 Pkinase Domain 139 204 264 38.9 5.9e-10 1 CL0016
Cotton_A_21886_CDS 21 85 21 85 PF05641.12 Agenet Domain 1 61 61 65.6 4e-18 1 CL0049
Cotton_A_21886_CDS 218 278 218 278 PF05641.12 Agenet Domain 1 61 61 72.2 3.6e-20 1 CL0049
Cotton_A_14200_CDS 180 265 178 266 PF05172.13 Nup35_RRM Domain 3 100 101 85.7 1.7e-24 1 CL0221
Cotton_A_25709_CDS 16 271 16 271 PF00069.25 Pkinase Domain 1 264 264 245.3 6.6e-73 1 CL0016
Cotton_A_25709_CDS 314 374 314 374 PF03822.14 NAF Domain 1 54 54 80.7 6.2e-23 1 CL0573
Cotton_A_25709_CDS 508 633 508 636 PF07967.13 zf-C3HC Domain 1 130 133 115.8 1.3e-33 1 CL0417
Cotton_A_10968_CDS 15 95 14 97 PF05755.12 REF Family 2 82 206 69.3 3.8e-19 1 No_clan
Cotton_A_10849_CDS 10 57 10 57 PF00319.18 SRF-TF Domain 1 48 48 86.0 8.4e-25 1 No_clan
Cotton_A_10849_CDS 83 170 76 171 PF01486.17 K-box Family 5 92 93 87.5 5.1e-25 1 No_clan
Cotton_A_33118_CDS 42 92 41 92 PF00249.31 Myb_DNA-binding Domain 2 46 46 31.5 1.4e-07 1 CL0123
Cotton_A_33118_CDS 137 182 136 183 PF14379.6 Myb_CC_LHEQLE Family 2 47 48 90.3 4.4e-26 1 No_clan
Cotton_A_14202_CDS 63 149 63 149 PF07911.13 DUF1677 Family 1 89 89 121.3 1.6e-35 1 No_clan
Cotton_A_37015_CDS 14 62 14 62 PF00249.31 Myb_DNA-binding Domain 1 46 46 47.0 2.2e-12 1 CL0123
Cotton_A_37015_CDS 69 111 68 113 PF00249.31 Myb_DNA-binding Domain 2 44 46 37.9 1.4e-09 1 CL0123
Cotton_A_16203_CDS 76 292 76 294 PF02167.15 Cytochrom_C1 Family 1 217 219 320.2 7e-96 1 CL0318
Cotton_A_01823_CDS 486 515 482 517 PF00514.23 Arm Repeat 9 38 41 28.9 8e-07 1 CL0020
Cotton_A_31291_CDS 273 320 268 321 PF04570.14 zf-FLZ Domain 6 53 54 72.3 1.6e-20 1 CL0175
Cotton_A_00463_CDS 81 401 79 403 PF00520.31 Ion_trans Family 3 243 245 104.9 3.7e-30 1 CL0030
Cotton_A_40061_CDS 30 62 29 62 PF12854.7 PPR_1 Repeat 2 34 34 26.6 3.5e-06 1 CL0020
Cotton_A_15513_CDS 54 230 53 230 PF01595.20 DUF21 Domain 2 176 176 151.3 2.2e-44 1 No_clan
Cotton_A_15513_CDS 245 303 245 304 PF00571.28 CBS Domain 1 56 57 23.7 4.8e-05 1 No_clan
Cotton_A_15513_CDS 313 368 313 369 PF00571.28 CBS Domain 1 56 57 29.7 6.5e-07 1 No_clan
Cotton_A_15513_CDS 390 491 389 494 PF03471.17 CorC_HlyC Domain 2 78 81 71.0 6.2e-20 1 No_clan
Cotton_A_33081_CDS 128 290 127 292 PF01764.25 Lipase_3 Family 2 140 142 138.3 1.5e-40 1 CL0028
Cotton_A_02230_CDS 133 184 132 189 PF00403.26 HMA Domain 2 57 62 51.2 1.3e-13 1 No_clan
Cotton_A_08370_CDS 83 131 83 132 PF00010.26 HLH Domain 1 52 53 25.4 1e-05 1 No_clan
Cotton_A_13575_CDS 50 132 50 159 PF05687.13 BES1_N Family 1 83 152 145.0 2.2e-42 1 No_clan
Cotton_A_13575_CDS 291 661 279 676 PF01373.17 Glyco_hydro_14 Domain 16 378 402 274.4 1.5e-81 1 CL0058
Cotton_A_28606_CDS 25 65 6 72 PF00139.19 Lectin_legB Domain 110 148 249 32.7 5.2e-08 1 CL0004
Cotton_A_01183_CDS 15 136 15 140 PF04857.20 CAF1 Family 1 125 319 42.2 5.5e-11 1 CL0219
Cotton_A_01183_CDS 159 243 137 243 PF04857.20 CAF1 Family 210 319 319 28.3 9e-07 1 CL0219
Cotton_A_30158_CDS 5 34 4 36 PF12854.7 PPR_1 Repeat 2 31 34 40.2 1.9e-10 1 CL0020
Cotton_A_30158_CDS 46 76 45 76 PF13041.6 PPR_2 Repeat 4 34 50 31.7 1.3e-07 1 CL0020
Cotton_A_07016_CDS 7 65 5 66 PF00046.29 Homeodomain Domain 3 56 57 64.5 5.8e-18 1 CL0123
Cotton_A_06419_CDS 46 294 43 294 PF00141.23 peroxidase Domain 3 229 229 225.6 6.2e-67 1 CL0617
Cotton_A_15397_CDS 2 161 1 161 PF00582.26 Usp Domain 4 141 141 92.5 3.2e-26 1 CL0039
Cotton_A_26695_CDS 45 61 44 61 PF07145.15 PAM2 Motif 2 18 18 22.6 5.4e-05 1 No_clan
Cotton_A_26695_CDS 166 204 165 209 PF00076.22 RRM_1 Domain 25 65 70 23.7 3.1e-05 1 CL0221
Cotton_A_26695_CDS 239 306 239 307 PF00076.22 RRM_1 Domain 1 69 70 34.5 1.3e-08 1 CL0221
Cotton_A_20146_CDS 72 383 53 383 PF03140.15 DUF247 Family 36 287 397 147.9 4.7e-43 1 No_clan
Cotton_A_00816_CDS 42 120 15 120 PF14368.6 LTP_2 Family 22 97 97 45.4 6.4e-12 1 CL0482
Cotton_A_04375_CDS 100 277 95 300 PF00931.22 NB-ARC Domain 46 222 252 107.8 5.1e-31 1 CL0023
Cotton_A_37094_CDS 1 344 1 344 PF04864.13 Alliinase_C Domain 16 363 363 478.1 1.4e-143 1 CL0061
Cotton_A_37778_CDS 150 429 105 437 PF00295.17 Glyco_hydro_28 Domain 53 318 325 121.7 3.3e-35 1 CL0268
Cotton_A_08812_CDS 31 106 25 112 PF01453.24 B_lectin Domain 13 92 105 41.2 1.9e-10 1 No_clan
Cotton_A_15389_CDS 71 160 70 161 PF04576.15 Zein-binding Family 2 91 92 110.6 3.2e-32 1 No_clan
Cotton_A_28058_CDS 12 171 12 173 PF00071.22 Ras Domain 1 160 162 200.9 9.1e-60 1 CL0023
Cotton_A_36085_CDS 28 133 28 137 PF00411.19 Ribosomal_S11 Family 1 106 110 152.5 4.8e-45 1 CL0267
Cotton_A_36085_CDS 161 351 161 352 PF01193.24 RNA_pol_L Domain 1 68 69 49.6 1.9e-13 1 CL0509
Cotton_A_36085_CDS 192 283 188 291 PF01000.26 RNA_pol_A_bac Domain 11 106 112 50.0 3.2e-13 1 No_clan
Cotton_A_36085_CDS 388 451 386 452 PF03118.15 RNA_pol_A_CTD Domain 3 66 67 46.3 2.7e-12 1 CL0198
Cotton_A_30885_CDS 36 130 35 131 PF01657.17 Stress-antifung Family 2 94 95 58.6 7.3e-16 1 No_clan
Cotton_A_30885_CDS 152 244 145 244 PF01657.17 Stress-antifung Family 9 95 95 56.1 4.4e-15 1 No_clan
Cotton_A_30885_CDS 360 624 356 626 PF07714.17 Pkinase_Tyr Domain 5 257 259 156.5 7.6e-46 1 CL0016
Cotton_A_28605_CDS 1 67 1 67 PF11820.8 DUF3339 Family 1 67 67 120.0 3.6e-35 1 No_clan
Cotton_A_17013_CDS 108 341 105 356 PF00348.17 polyprenyl_synt Domain 4 235 256 190.6 2.4e-56 1 CL0613
Cotton_A_36285_CDS 8 417 6 425 PF03094.15 Mlo Family 3 421 479 420.4 6.9e-126 1 No_clan
Cotton_A_14258_CDS 149 373 147 373 PF03407.16 Nucleotid_trans Family 3 212 212 191.0 2.5e-56 1 CL0110
Cotton_A_09579_CDS 7 70 7 71 PF04212.18 MIT Domain 2 64 65 77.9 4.6e-22 1 No_clan
Cotton_A_09579_CDS 171 353 170 353 PF00004.29 AAA Domain 2 132 132 133.3 6.7e-39 1 CL0023
Cotton_A_09579_CDS 423 487 423 487 PF09336.10 Vps4_C Domain 1 61 61 78.0 3.9e-22 1 CL0671
Cotton_A_15118_CDS 151 432 89 439 PF00295.17 Glyco_hydro_28 Domain 53 320 325 135.6 1.9e-39 1 CL0268
Cotton_A_40357_CDS 4 82 1 83 PF03501.15 S10_plectin Domain 14 92 93 123.5 2.8e-36 1 CL0123
Cotton_A_36669_CDS 39 108 29 112 PF00153.27 Mito_carr Family 15 92 97 44.8 9e-12 1 No_clan
Cotton_A_36669_CDS 124 224 121 227 PF00153.27 Mito_carr Family 4 93 97 66.7 1.3e-18 1 No_clan
Cotton_A_36669_CDS 257 347 252 348 PF00153.27 Mito_carr Family 7 96 97 64.3 7.3e-18 1 No_clan
Cotton_A_07385_CDS 8 246 7 246 PF05875.12 Ceramidase Family 2 263 263 181.5 2e-53 1 CL0192
Cotton_A_29821_CDS 111 184 99 213 PF06325.13 PrmA Family 161 233 296 49.3 4.4e-13 1 CL0063
Cotton_A_14911_CDS 51 137 45 138 PF06974.13 DUF1298 Family 56 144 145 82.4 2.9e-23 1 No_clan
Cotton_A_38380_CDS 81 408 79 408 PF00291.25 PALP Family 4 294 294 159.2 1.5e-46 1 CL0063
Cotton_A_33237_CDS 2 215 1 220 PF00069.25 Pkinase Domain 74 256 264 101.1 6.4e-29 1 CL0016
Cotton_A_00311_CDS 56 133 55 135 PF00717.23 Peptidase_S24 Domain 2 68 70 34.4 1.6e-08 1 CL0299
Cotton_A_21984_CDS 26 169 25 171 PF00483.23 NTP_transferase Family 2 145 248 40.9 1.7e-10 1 CL0110
Cotton_A_21984_CDS 340 373 339 373 PF00132.24 Hexapep Repeat 2 36 36 30.8 1.6e-07 1 CL0536
Cotton_A_21984_CDS 646 724 645 724 PF02020.18 W2 Family 2 79 79 70.3 1.1e-19 1 CL0020
Cotton_A_13900_CDS 10 62 10 62 PF02238.15 COX7a Family 1 53 53 55.4 6.1e-15 1 No_clan
Cotton_A_09773_CDS 186 370 150 379 PF04616.14 Glyco_hydro_43 Family 33 223 288 64.9 7.2e-18 1 CL0143
Cotton_A_14050_CDS 22 371 19 373 PF00503.20 G-alpha Domain 4 352 354 327.7 8.9e-98 1 CL0023
Cotton_A_06030_CDS 1 72 1 72 PF10890.8 Cyt_b-c1_8 Family 1 72 72 127.2 2.3e-37 1 CL0429
Cotton_A_16475_CDS 14 176 4 177 PF00025.21 Arf Domain 11 174 175 220.4 1.1e-65 1 CL0023
Cotton_A_27201_CDS 7 68 6 68 PF00226.31 DnaJ Domain 2 63 63 88.4 2.4e-25 1 CL0392
Cotton_A_27201_CDS 137 324 137 334 PF14308.6 DnaJ-X Domain 1 201 211 172.0 1.1e-50 1 No_clan
Cotton_A_02713_CDS 23 485 16 485 PF00171.22 Aldedh Family 7 462 462 571.5 1.1e-171 1 CL0099
Cotton_A_11401_CDS 119 373 117 376 PF07714.17 Pkinase_Tyr Domain 4 256 259 175.8 9.8e-52 1 CL0016
Cotton_A_23814_CDS 6 177 5 177 PF00025.21 Arf Domain 2 175 175 267.1 4.7e-80 1 CL0023
Cotton_A_12409_CDS 32 445 31 447 PF00860.20 Xan_ur_permease Family 2 387 389 202.3 9.4e-60 1 CL0062
Cotton_A_24940_CDS 17 87 15 87 PF07765.12 KIP1 Family 5 74 74 93.9 4.8e-27 1 No_clan
Cotton_A_14446_CDS 83 192 82 196 PF01694.22 Rhomboid Family 2 112 150 91.6 4.7e-26 1 CL0207
Cotton_A_34214_CDS 2 104 2 110 PF01187.18 MIF Domain 1 102 114 80.9 7.9e-23 1 CL0082
Cotton_A_08716_CDS 29 182 19 282 PF13347.6 MFS_2 Family 11 153 427 48.7 3.9e-13 1 CL0015
Cotton_A_06601_CDS 4 158 3 158 PF05983.11 Med7 Family 2 191 191 154.4 3.6e-45 1 No_clan
Cotton_A_09316_CDS 25 158 22 163 PF03208.19 PRA1 Family 5 138 143 150.7 2e-44 1 No_clan
Cotton_A_28133_CDS 58 513 58 517 PF00067.22 p450 Domain 1 458 463 326.1 3.4e-97 1 No_clan
Cotton_A_14207_CDS 114 241 113 241 PF16719.5 SAWADEE Domain 2 141 141 128.3 2e-37 1 CL0049
Cotton_A_32757_CDS 35 104 34 175 PF08240.12 ADH_N Domain 2 69 109 42.0 7.1e-11 1 CL0296
Cotton_A_32757_CDS 199 328 199 328 PF13602.6 ADH_zinc_N_2 Domain 1 133 133 74.6 1.5e-20 1 CL0063
Cotton_A_07615_CDS 878 1166 877 1166 PF00069.25 Pkinase Domain 2 264 264 218.7 8.6e-65 1 CL0016
Cotton_A_19513_CDS 18 91 18 105 PF00300.22 His_Phos_1 Domain 1 63 194 26.6 4.2e-06 1 CL0071
Cotton_A_02476_CDS 143 452 125 464 PF00294.24 PfkB Family 24 290 302 116.4 1.5e-33 1 CL0118
Cotton_A_28209_CDS 7 98 5 99 PF17292.2 POB3_N Domain 3 92 93 80.3 1.1e-22 1 CL0266
Cotton_A_28209_CDS 132 190 106 191 PF03531.14 SSrecog Domain 11 68 69 68.6 3.2e-19 1 CL0266
Cotton_A_28209_CDS 366 455 365 456 PF08512.12 Rtt106 Domain 2 88 89 75.5 3.2e-21 1 CL0266
Cotton_A_28209_CDS 571 639 571 639 PF00505.19 HMG_box Domain 1 69 69 80.0 1.3e-22 1 CL0114
Cotton_A_33717_CDS 316 347 310 347 PF00400.32 WD40 Repeat 10 38 38 22.0 0.00021 1 CL0186
Cotton_A_33717_CDS 364 389 351 389 PF00400.32 WD40 Repeat 13 38 38 16.1 0.015 1 CL0186
Cotton_A_24739_CDS 229 319 228 322 PF08797.11 HIRAN Domain 2 93 96 50.3 1.6e-13 1 No_clan
Cotton_A_24739_CDS 448 818 448 818 PF00176.23 SNF2_N Family 1 350 350 270.5 1.6e-80 1 CL0023
Cotton_A_24739_CDS 869 916 868 918 PF13920.6 zf-C3HC4_3 Domain 2 48 50 36.1 4.4e-09 1 CL0229
Cotton_A_24739_CDS 942 1056 941 1056 PF00271.31 Helicase_C Family 2 111 111 63.4 2.2e-17 1 CL0023
Cotton_A_24880_CDS 28 201 28 201 PF01397.21 Terpene_synth Domain 1 192 192 181.0 1.9e-53 1 No_clan
Cotton_A_24880_CDS 199 453 195 453 PF03936.16 Terpene_synth_C Domain 12 267 267 329.8 1.1e-98 1 CL0613
Cotton_A_30372_CDS 144 323 135 323 PF00544.19 Pec_lyase_C Domain 34 211 211 73.0 2.4e-20 1 CL0268
Cotton_A_18576_CDS 45 124 45 124 PF07019.12 Rab5ip Family 1 82 82 47.1 2.7e-12 1 No_clan
Cotton_A_26065_CDS 307 663 265 663 PF09797.9 NatB_MDM20 Family 17 382 382 197.8 2.6e-58 1 No_clan
Cotton_A_09626_CDS 12 72 2 73 PF13668.6 Ferritin_2 Domain 75 135 136 41.9 1e-10 1 CL0044
Cotton_A_19879_CDS 5 210 1 210 PF08597.10 eIF3_subunit Family 21 242 242 165.8 1.5e-48 1 No_clan
Cotton_A_04607_CDS 50 406 47 408 PF01094.28 ANF_receptor Family 4 352 354 272.2 6.2e-81 1 CL0144
Cotton_A_04607_CDS 490 808 475 810 PF00497.20 SBP_bac_3 Domain 20 223 225 75.7 3.3e-21 1 CL0177
Cotton_A_04607_CDS 589 841 587 841 PF00060.26 Lig_chan Family 3 149 149 131.2 2.6e-38 1 CL0030
Cotton_A_37763_CDS 1292 1404 1289 1418 PF01326.19 PPDK_N Family 125 212 328 48.3 8.4e-13 1 CL0179
Cotton_A_04672_CDS 40 295 40 295 PF01571.21 GCV_T Domain 1 257 257 289.9 1.6e-86 1 CL0289
Cotton_A_04672_CDS 323 399 323 400 PF08669.11 GCV_T_C Domain 2 79 80 61.7 4.7e-17 1 No_clan
Cotton_A_04354_CDS 43 86 43 95 PF02892.15 zf-BED Domain 1 40 44 31.1 1.8e-07 1 CL0361
Cotton_A_04354_CDS 433 530 432 530 PF14372.6 DUF4413 Family 3 100 100 87.9 4.5e-25 1 No_clan
Cotton_A_04354_CDS 580 661 579 661 PF05699.14 Dimer_Tnp_hAT Domain 2 86 86 84.6 3.1e-24 1 No_clan
Cotton_A_13980_CDS 42 140 42 141 PF03195.14 LOB Family 1 98 99 128.7 9.9e-38 1 No_clan
Cotton_A_10218_CDS 156 222 151 224 PF00575.23 S1 Domain 6 73 75 48.1 1.1e-12 1 CL0021
Cotton_A_10218_CDS 460 610 457 615 PF00270.29 DEAD Domain 4 170 176 32.7 5.7e-08 1 CL0023
Cotton_A_10218_CDS 652 784 645 784 PF00271.31 Helicase_C Family 8 111 111 46.9 2.9e-12 1 CL0023
Cotton_A_10218_CDS 846 934 846 934 PF04408.23 HA2 Domain 1 108 108 88.0 4.5e-25 1 No_clan
Cotton_A_10218_CDS 992 1067 992 1069 PF07717.16 OB_NTP_bind Domain 1 81 83 86.5 1.2e-24 1 CL0021
Cotton_A_32295_CDS 26 186 26 187 PF00071.22 Ras Domain 1 161 162 195.1 5.7e-58 1 CL0023
Cotton_A_05849_CDS 6 140 6 142 PF01090.19 Ribosomal_S19e Family 1 135 137 195.1 3.6e-58 1 CL0123
Cotton_A_12957_CDS 55 143 46 153 PF02458.15 Transferase Family 157 244 434 28.5 5.9e-07 1 CL0149
Cotton_A_17863_CDS 168 292 165 318 PF13847.6 Methyltransf_31 Domain 6 127 152 69.2 3.2e-19 1 CL0063
Cotton_A_11596_CDS 6 42 6 47 PF00834.19 Ribul_P_3_epim Domain 1 38 198 35.2 7.6e-09 1 CL0036
Cotton_A_11596_CDS 65 231 61 231 PF00834.19 Ribul_P_3_epim Domain 32 198 198 180.2 2.9e-53 1 CL0036
Cotton_A_19294_CDS 1 142 1 142 PF04601.13 DUF569 Domain 1 142 142 231.3 2.7e-69 1 CL0066
Cotton_A_19294_CDS 224 365 224 365 PF04601.13 DUF569 Domain 1 142 142 241.8 1.5e-72 1 CL0066
Cotton_A_09084_CDS 51 132 50 132 PF14547.6 Hydrophob_seed Domain 2 84 85 92.9 1e-26 1 CL0482
Cotton_A_01728_CDS 108 284 108 285 PF00800.18 PDT Family 1 182 183 193.4 2.9e-57 1 CL0177
Cotton_A_22798_CDS 15 88 14 90 PF12895.7 ANAPC3 Domain 2 80 82 58.4 6.2e-16 1 CL0020
Cotton_A_22798_CDS 110 139 108 139 PF13181.6 TPR_8 Repeat 3 32 34 15.6 0.014 1 CL0020
Cotton_A_22798_CDS 516 547 515 548 PF00515.28 TPR_1 Repeat 2 33 34 31.7 8.8e-08 1 CL0020
Cotton_A_22798_CDS 585 614 583 616 PF07719.17 TPR_2 Repeat 3 32 34 23.5 3.8e-05 1 CL0020
Cotton_A_34143_CDS 30 90 20 96 PF00276.20 Ribosomal_L23 Family 20 80 86 58.8 5.2e-16 1 No_clan
Cotton_A_03874_CDS 46 310 46 310 PF16499.5 Melibiase_2 Family 1 284 284 268.7 5.2e-80 1 CL0058
Cotton_A_13205_CDS 195 298 194 323 PF00561.20 Abhydrolase_1 Domain 3 106 257 67.6 1.3e-18 1 CL0028
Cotton_A_20189_CDS 24 97 24 98 PF03110.14 SBP Domain 1 74 75 105.1 1.7e-30 1 No_clan
Cotton_A_16046_CDS 30 315 30 316 PF14576.6 SEO_N Family 1 286 287 410.2 4e-123 1 No_clan
Cotton_A_16046_CDS 476 704 475 705 PF14577.6 SEO_C Family 2 231 232 303.2 1.1e-90 1 No_clan
Cotton_A_11872_CDS 63 133 63 133 PF12738.7 PTCB-BRCT Family 1 63 63 36.2 4.4e-09 1 CL0459
Cotton_A_27223_CDS 19 72 18 76 PF05347.15 Complex1_LYR Family 2 54 59 29.2 7.2e-07 1 CL0491
Cotton_A_28346_CDS 108 416 107 418 PF00520.31 Ion_trans Family 2 243 245 79.5 2.2e-22 1 CL0030
Cotton_A_28346_CDS 510 600 507 605 PF00027.29 cNMP_binding Domain 4 84 89 28.9 9e-07 1 CL0029
Cotton_A_35227_CDS 153 202 151 202 PF00847.20 AP2 Domain 3 54 54 53.0 3e-14 1 CL0081
Cotton_A_30430_CDS 64 189 55 193 PF03901.17 Glyco_transf_22 Family 274 387 417 77.2 1.4e-21 1 CL0111
Cotton_A_14000_CDS 60 85 59 87 PF00036.32 EF-hand_1 Domain 2 27 29 25.5 5.8e-06 1 CL0220
Cotton_A_14000_CDS 95 164 94 166 PF13499.6 EF-hand_7 Domain 2 69 71 38.4 1.2e-09 1 CL0220
Cotton_A_17524_CDS 220 280 220 280 PF12906.7 RINGv Domain 1 48 48 29.0 8.5e-07 1 CL0229
Cotton_A_17524_CDS 340 393 340 393 PF00281.19 Ribosomal_L5 Domain 1 57 57 70.4 1.2e-19 1 CL0652
Cotton_A_17524_CDS 397 495 397 495 PF00673.21 Ribosomal_L5_C Domain 1 94 94 69.7 1.7e-19 1 No_clan
Cotton_A_14899_CDS 22 111 22 111 PF00447.17 HSF_DNA-bind Domain 1 96 96 104.5 3.5e-30 1 CL0123
Cotton_A_38601_CDS 118 151 118 151 PF02375.17 JmjN Family 1 34 34 52.9 2.5e-14 1 CL0029
Cotton_A_38601_CDS 310 424 309 424 PF02373.22 JmjC Domain 2 114 114 112.8 1.2e-32 1 CL0029
Cotton_A_38601_CDS 531 581 531 583 PF02928.16 zf-C5HC2 Domain 1 52 54 43.7 2.6e-11 1 No_clan
Cotton_A_16497_CDS 25 330 21 331 PF05703.11 Auxin_canalis Family 5 255 256 350.3 8.4e-105 1 No_clan
Cotton_A_16497_CDS 368 472 368 474 PF08458.10 PH_2 Family 1 103 105 136.1 5.2e-40 1 CL0266
Cotton_A_02213_CDS 55 391 55 391 PF00225.23 Kinesin Domain 1 333 333 394.1 4.2e-118 1 CL0023
Cotton_A_06333_CDS 34 382 33 382 PF12819.7 Malectin_like Domain 2 336 336 145.0 3e-42 1 CL0202
Cotton_A_06333_CDS 504 764 498 768 PF07714.17 Pkinase_Tyr Domain 7 255 259 161.2 2.8e-47 1 CL0016
Cotton_A_24589_CDS 26 569 25 571 PF03321.13 GH3 Family 2 525 527 686.5 2.8e-206 1 CL0378
Cotton_A_28028_CDS 97 294 94 295 PF01633.20 Choline_kinase Family 4 212 213 219.1 4.8e-65 1 CL0016
Cotton_A_22097_CDS 136 192 135 193 PF02701.15 zf-Dof Family 2 58 59 108.2 1.6e-31 1 No_clan
Cotton_A_34564_CDS 137 272 131 272 PF04116.13 FA_hydroxylase Family 7 133 133 75.0 6.8e-21 1 No_clan
Cotton_A_34564_CDS 466 630 466 630 PF12076.8 Wax2_C Domain 1 164 164 253.8 5.7e-76 1 No_clan
Cotton_A_25442_CDS 85 248 53 251 PF01764.25 Lipase_3 Family 33 138 142 50.3 2.2e-13 1 CL0028
Cotton_A_25442_CDS 458 569 458 570 PF18117.1 EDS1_EP Domain 1 106 107 119.3 9.2e-35 1 No_clan
Cotton_A_11904_CDS 50 481 50 481 PF00854.21 PTR2 Family 1 395 395 253.8 2.4e-75 1 CL0015
Cotton_A_04915_CDS 78 156 78 156 PF18290.1 Nudix_hydro Domain 1 80 80 106.1 6.6e-31 1 No_clan
Cotton_A_04915_CDS 169 289 168 294 PF00293.28 NUDIX Domain 2 123 131 80.0 1.6e-22 1 CL0261
Cotton_A_33195_CDS 48 239 47 242 PF00149.28 Metallophos Domain 2 201 204 125.7 3.2e-36 1 CL0163
Cotton_A_09975_CDS 31 148 31 148 PF00188.26 CAP Domain 1 126 126 78.8 6.1e-22 1 CL0659
Cotton_A_17614_CDS 1 76 1 81 PF09598.10 Stm1_N Family 1 64 65 58.1 1.2e-15 1 No_clan
Cotton_A_17614_CDS 148 255 148 255 PF04774.15 HABP4_PAI-RBP1 Family 1 116 116 81.6 7.7e-23 1 No_clan
Cotton_A_00093_CDS 23 396 23 397 PF00282.19 Pyridoxal_deC Domain 1 374 375 386.1 1.3e-115 1 CL0061
Cotton_A_09641_CDS 30 340 30 341 PF00657.22 Lipase_GDSL Family 2 199 200 53.0 4.2e-14 1 CL0264
Cotton_A_18949_CDS 33 319 33 320 PF00657.22 Lipase_GDSL Family 1 199 200 50.8 2e-13 1 CL0264
Cotton_A_17409_CDS 97 186 91 188 PF12068.8 PH_RBD Domain 78 166 169 64.7 6.6e-18 1 CL0266
Cotton_A_17409_CDS 357 585 356 585 PF00566.18 RabGAP-TBC Family 2 215 215 175.6 1e-51 1 No_clan
Cotton_A_04499_CDS 39 75 38 76 PF08263.12 LRRNT_2 Family 2 40 41 21.2 0.00026 1 No_clan
Cotton_A_02778_CDS 1 52 1 52 PF07765.12 KIP1 Family 23 74 74 75.2 3.3e-21 1 No_clan
Cotton_A_37824_CDS 70 185 69 186 PF10374.9 EST1 Family 2 135 136 61.3 1.4e-16 1 CL0020
Cotton_A_37824_CDS 198 512 198 514 PF10373.9 EST1_DNA_bind Family 1 280 282 193.5 5.1e-57 1 CL0020
Cotton_A_30235_CDS 45 340 43 340 PF03016.15 Exostosin Family 4 300 300 246.3 3.9e-73 1 No_clan
Cotton_A_01157_CDS 91 172 91 187 PF00355.26 Rieske Domain 1 83 89 75.2 2.9e-21 1 CL0516
Cotton_A_01157_CDS 296 381 296 383 PF08417.12 PaO Family 1 85 88 72.4 2.6e-20 1 No_clan
Cotton_A_15985_CDS 43 150 43 151 PF14226.6 DIOX_N Family 1 117 118 86.5 2.2e-24 1 CL0029
Cotton_A_15985_CDS 200 296 197 296 PF03171.20 2OG-FeII_Oxy Domain 4 101 101 84.6 5.3e-24 1 CL0029
Cotton_A_07054_CDS 229 480 226 480 PF07714.17 Pkinase_Tyr Domain 4 259 259 113.0 1.4e-32 1 CL0016
Cotton_A_18017_CDS 34 109 2 110 PF01411.19 tRNA-synt_2c Family 484 551 552 39.5 2.5e-10 1 CL0040
Cotton_A_35599_CDS 15 177 14 177 PF04690.13 YABBY Family 2 162 162 241.8 4.9e-72 1 CL0114
Cotton_A_10868_CDS 50 153 50 188 PF00561.20 Abhydrolase_1 Domain 1 107 257 59.8 3.2e-16 1 CL0028
Cotton_A_10868_CDS 226 286 203 286 PF00561.20 Abhydrolase_1 Domain 206 257 257 29.6 4.9e-07 1 CL0028
Cotton_A_22311_CDS 9 41 9 42 PF01344.25 Kelch_1 Repeat 1 32 46 31.5 9.7e-08 1 CL0186
Cotton_A_37809_CDS 177 463 171 470 PF00176.23 SNF2_N Family 51 236 350 160.3 5.1e-47 1 CL0023
Cotton_A_37809_CDS 633 672 632 672 PF13923.6 zf-C3HC4_2 Domain 2 40 40 31.0 1.6e-07 1 CL0229
Cotton_A_37809_CDS 716 830 715 830 PF00271.31 Helicase_C Family 2 111 111 48.4 1e-12 1 CL0023
Cotton_A_23528_CDS 15 276 14 285 PF03140.15 DUF247 Family 2 257 397 190.4 5.9e-56 1 No_clan
Cotton_A_38367_CDS 59 185 58 186 PF00988.22 CPSase_sm_chain Domain 2 127 128 161.2 9.6e-48 1 CL0364
Cotton_A_38367_CDS 248 421 246 423 PF00117.28 GATase Domain 3 188 190 156.8 5.3e-46 1 CL0014
Cotton_A_06317_CDS 10 151 8 157 PF00407.19 Bet_v_1 Domain 5 145 151 39.3 5.7e-10 1 CL0209
Cotton_A_06172_CDS 227 468 227 468 PF07059.12 DUF1336 Family 1 229 229 201.9 1.4e-59 1 No_clan
Cotton_A_21437_CDS 18 91 12 98 PF12796.7 Ank_2 Repeat 12 79 83 34.2 2.8e-08 1 CL0465
Cotton_A_21437_CDS 94 159 89 165 PF12796.7 Ank_2 Repeat 22 77 83 44.9 1.3e-11 1 CL0465
Cotton_A_21437_CDS 167 227 159 230 PF12796.7 Ank_2 Repeat 24 79 83 44.8 1.5e-11 1 CL0465
Cotton_A_21437_CDS 232 279 228 279 PF13857.6 Ank_5 Repeat 10 56 56 30.7 2.7e-07 1 CL0465
Cotton_A_21437_CDS 351 467 350 467 PF13962.6 PGG Domain 2 116 116 93.2 8.7e-27 1 No_clan
Cotton_A_24024_CDS 52 135 52 135 PF01777.18 Ribosomal_L27e Family 1 85 85 108.7 1.4e-31 1 No_clan
Cotton_A_20569_CDS 52 365 52 366 PF00657.22 Lipase_GDSL Family 1 199 200 64.3 1.4e-17 1 CL0264
Cotton_A_38106_CDS 94 264 89 266 PF02779.24 Transket_pyr Domain 7 176 178 158.8 1e-46 1 CL0254
Cotton_A_38106_CDS 280 401 279 401 PF02780.20 Transketolase_C Domain 2 124 124 124.8 1.7e-36 1 CL0591
Cotton_A_09424_CDS 151 354 151 359 PF07859.13 Abhydrolase_3 Domain 1 159 211 155.9 1.2e-45 1 CL0028
Cotton_A_19330_CDS 83 449 77 460 PF05577.12 Peptidase_S28 Domain 54 419 434 191.5 2.2e-56 1 CL0028
Cotton_A_04657_CDS 121 307 119 308 PF00573.22 Ribosomal_L4 Family 3 191 192 222.3 4.2e-66 1 No_clan
Cotton_A_36700_CDS 367 428 366 429 PF13432.6 TPR_16 Family 2 66 68 21.3 0.00031 1 CL0020
Cotton_A_36700_CDS 578 609 577 610 PF13181.6 TPR_8 Repeat 2 33 34 12.6 0.12 1 CL0020
Cotton_A_36700_CDS 646 674 645 678 PF13181.6 TPR_8 Repeat 2 30 34 12.4 0.14 1 CL0020
Cotton_A_32815_CDS 34 103 12 103 PF02519.14 Auxin_inducible Family 20 90 90 72.0 3.3e-20 1 No_clan
Cotton_A_18446_CDS 116 217 116 218 PF02362.21 B3 Family 1 100 101 78.6 2.5e-22 1 CL0405
Cotton_A_18446_CDS 256 337 255 338 PF06507.13 Auxin_resp Family 2 82 83 79.6 1.5e-22 1 No_clan
Cotton_A_23496_CDS 146 258 128 269 PF00156.27 Pribosyltran Domain 24 130 159 63.3 1.8e-17 1 CL0533
Cotton_A_35677_CDS 9 181 4 191 PF00421.19 PSII Family 245 472 507 156.0 1.4e-45 1 No_clan
Cotton_A_34947_CDS 7 50 3 69 PF05340.12 DUF740 Family 10 53 609 26.5 2.6e-06 1 No_clan
Cotton_A_27024_CDS 61 225 40 229 PF02536.14 mTERF Family 87 254 314 73.5 1.4e-20 1 No_clan
Cotton_A_27024_CDS 250 357 240 358 PF02536.14 mTERF Family 210 313 314 69.0 3.1e-19 1 No_clan
Cotton_A_08443_CDS 21 72 21 73 PF09713.10 A_thal_3526 Domain 1 52 53 76.9 1.1e-21 1 No_clan
Cotton_A_31439_CDS 18 58 15 60 PF00646.33 F-box Domain 6 46 48 22.0 0.00011 1 CL0271
Cotton_A_31439_CDS 114 273 114 273 PF14299.6 PP2 Family 1 146 146 182.3 4.9e-54 1 No_clan
Cotton_A_07196_CDS 33 71 30 71 PF08263.12 LRRNT_2 Family 4 41 41 45.2 8.1e-12 1 No_clan
Cotton_A_07196_CDS 125 144 125 146 PF00560.33 LRR_1 Repeat 1 20 23 12.3 0.21 1 CL0022
Cotton_A_07196_CDS 244 302 242 302 PF13855.6 LRR_8 Repeat 3 61 61 35.6 5.9e-09 1 CL0022
Cotton_A_07196_CDS 484 540 480 540 PF13855.6 LRR_8 Repeat 5 61 61 30.9 1.7e-07 1 CL0022
Cotton_A_07196_CDS 722 953 702 956 PF00069.25 Pkinase Domain 25 259 264 74.1 1.1e-20 1 CL0016
Cotton_A_10457_CDS 110 162 96 169 PF03004.14 Transposase_24 Family 33 85 142 24.8 1.9e-05 1 No_clan
Cotton_A_16505_CDS 90 130 78 132 PF04570.14 zf-FLZ Domain 11 51 54 58.5 3.3e-16 1 CL0175
Cotton_A_30575_CDS 18 83 14 84 PF03004.14 Transposase_24 Family 70 141 142 24.1 3.1e-05 1 No_clan
Cotton_A_37697_CDS 23 57 22 58 PF08263.12 LRRNT_2 Family 2 40 41 35.1 1.2e-08 1 No_clan
Cotton_A_37697_CDS 332 593 329 595 PF00069.25 Pkinase Domain 4 260 264 127.3 6.6e-37 1 CL0016
Cotton_A_07641_CDS 40 131 39 131 PF01657.17 Stress-antifung Family 2 95 95 39.5 6.5e-10 1 No_clan
Cotton_A_07641_CDS 154 239 146 240 PF01657.17 Stress-antifung Family 8 94 95 50.4 2.6e-13 1 No_clan
Cotton_A_07641_CDS 318 542 317 586 PF00069.25 Pkinase Domain 2 221 264 152.1 1.9e-44 1 CL0016
Cotton_A_06169_CDS 14 128 14 129 PF18055.1 RPN6_N Domain 1 116 117 119.6 8.5e-35 1 No_clan
Cotton_A_06169_CDS 285 386 284 388 PF01399.27 PCI Domain 2 103 105 72.4 3.5e-20 1 CL0123
Cotton_A_06169_CDS 392 418 392 418 PF18503.1 RPN6_C_helix Domain 1 27 27 42.3 4.4e-11 1 No_clan
Cotton_A_14675_CDS 13 108 13 110 PF14363.6 AAA_assoc Family 1 94 96 37.4 2.4e-09 1 No_clan
Cotton_A_14675_CDS 220 365 219 366 PF00004.29 AAA Domain 2 131 132 62.3 6.2e-17 1 CL0023
Cotton_A_30913_CDS 19 58 17 63 PF12937.7 F-box-like Domain 3 43 48 30.8 1.9e-07 1 CL0271
Cotton_A_08017_CDS 169 265 165 289 PF13589.6 HATPase_c_3 Domain 5 99 137 60.8 1.2e-16 1 CL0025
Cotton_A_08017_CDS 399 543 399 543 PF17942.1 Morc6_S5 Family 1 139 139 202.3 3e-60 1 CL0329
Cotton_A_15781_CDS 84 345 80 345 PF07714.17 Pkinase_Tyr Domain 5 259 259 126.9 7.9e-37 1 CL0016
Cotton_A_12632_CDS 595 853 564 855 PF08214.11 HAT_KAT11 Domain 36 151 352 45.3 7e-12 1 CL0257
Cotton_A_12632_CDS 984 1052 983 1057 PF02135.16 zf-TAZ Family 2 75 75 35.2 1.3e-08 1 No_clan
Cotton_A_25644_CDS 83 148 83 151 PF00076.22 RRM_1 Domain 1 65 70 48.0 8.1e-13 1 CL0221
Cotton_A_25644_CDS 175 243 175 246 PF00076.22 RRM_1 Domain 1 67 70 53.0 2.3e-14 1 CL0221
Cotton_A_25644_CDS 280 344 280 344 PF00076.22 RRM_1 Domain 1 70 70 67.0 9.3e-19 1 CL0221
Cotton_A_26459_CDS 27 88 26 88 PF00226.31 DnaJ Domain 2 63 63 98.9 1.3e-28 1 CL0392
Cotton_A_26459_CDS 137 328 136 328 PF01556.18 DnaJ_C Domain 2 148 148 119.5 1.3e-34 1 No_clan
Cotton_A_23676_CDS 514 758 514 758 PF12490.8 BCAS3 Family 1 246 246 265.8 3.6e-79 1 No_clan
Cotton_A_15873_CDS 30 140 26 153 PF10168.9 Nup88 Family 6 111 710 26.1 1.8e-06 1 No_clan
Cotton_A_15873_CDS 180 263 171 266 PF10168.9 Nup88 Family 125 208 710 25.1 3.7e-06 1 No_clan
Cotton_A_15873_CDS 491 810 479 837 PF10168.9 Nup88 Family 362 686 710 49.2 1.9e-13 1 No_clan
Cotton_A_00597_CDS 24 63 24 63 PF00187.19 Chitin_bind_1 Domain 1 38 38 42.8 5.5e-11 1 No_clan
Cotton_A_00597_CDS 89 308 89 308 PF00182.19 Glyco_hydro_19 Domain 1 232 232 284.1 1e-84 1 CL0037
Cotton_A_09018_CDS 101 433 101 434 PF01546.28 Peptidase_M20 Family 1 206 207 113.5 1e-32 1 CL0035
Cotton_A_09018_CDS 213 323 213 331 PF07687.14 M20_dimer Domain 1 100 109 22.7 6.8e-05 1 No_clan
Cotton_A_03690_CDS 26 203 26 203 PF00265.18 TK Family 1 177 177 181.0 1.8e-53 1 CL0023
Cotton_A_39892_CDS 121 168 120 171 PF01842.25 ACT Domain 2 52 67 35.5 6.1e-09 1 CL0070
Cotton_A_26121_CDS 147 196 147 196 PF00847.20 AP2 Domain 1 53 54 36.0 6.2e-09 1 CL0081
Cotton_A_26121_CDS 239 289 239 290 PF00847.20 AP2 Domain 1 53 54 30.0 4.4e-07 1 CL0081
Cotton_A_02653_CDS 28 70 27 70 PF08263.12 LRRNT_2 Family 2 41 41 34.2 2.3e-08 1 No_clan
Cotton_A_02653_CDS 193 214 192 214 PF00560.33 LRR_1 Repeat 2 23 23 11.2 0.48 1 CL0022
Cotton_A_02653_CDS 345 605 342 609 PF00069.25 Pkinase Domain 5 257 264 99.2 2.4e-28 1 CL0016
Cotton_A_02788_CDS 8 147 7 164 PF00582.26 Usp Domain 5 121 141 53.6 3.3e-14 1 CL0039
Cotton_A_23210_CDS 79 220 77 220 PF04043.15 PMEI Domain 3 154 154 52.9 5.1e-14 1 No_clan
Cotton_A_31760_CDS 16 122 15 122 PF01655.18 Ribosomal_L32e Family 2 108 108 170.2 1.4e-50 1 No_clan
Cotton_A_24846_CDS 34 90 34 94 PF04193.14 PQ-loop Repeat 1 57 61 68.1 4e-19 1 CL0141
Cotton_A_24846_CDS 270 327 269 329 PF04193.14 PQ-loop Repeat 2 59 61 62.3 2.6e-17 1 CL0141
Cotton_A_37650_CDS 45 94 42 99 PF03634.13 TCP Family 3 56 156 58.6 1.1e-15 1 No_clan
Cotton_A_37650_CDS 122 394 122 395 PF00795.22 CN_hydrolase Family 1 260 261 151.0 3.7e-44 1 No_clan
Cotton_A_25664_CDS 28 361 28 362 PF12819.7 Malectin_like Domain 1 335 336 283.1 2.8e-84 1 CL0202
Cotton_A_25664_CDS 612 877 611 880 PF07714.17 Pkinase_Tyr Domain 3 256 259 168.5 1.6e-49 1 CL0016
Cotton_A_30658_CDS 85 516 84 519 PF00083.24 Sugar_tr Family 2 449 452 325.8 4.3e-97 1 CL0015
Cotton_A_17488_CDS 120 346 120 347 PF02485.21 Branch Family 1 246 247 286.1 2.3e-85 1 CL0110
Cotton_A_30097_CDS 1 57 1 62 PF03719.15 Ribosomal_S5_C Domain 11 66 72 70.8 4.9e-20 1 CL0329
Cotton_A_24143_CDS 31 278 31 278 PF07264.11 EI24 Family 1 178 178 126.7 1.1e-36 1 No_clan
Cotton_A_32758_CDS 34 98 33 148 PF08240.12 ADH_N Domain 2 64 109 31.5 1.3e-07 1 CL0296
Cotton_A_14872_CDS 48 81 48 89 PF12937.7 F-box-like Domain 1 34 48 32.6 5.5e-08 1 CL0271
Cotton_A_30161_CDS 174 205 168 205 PF00400.32 WD40 Repeat 7 38 38 13.3 0.12 1 CL0186
Cotton_A_30161_CDS 263 296 259 296 PF00400.32 WD40 Repeat 7 38 38 15.4 0.025 1 CL0186
Cotton_A_13254_CDS 15 63 3 65 PF00504.21 Chloroa_b-bind Family 110 159 161 60.4 2.9e-16 1 No_clan
Cotton_A_25553_CDS 79 261 79 263 PF00117.28 GATase Domain 1 188 190 151.9 1.6e-44 1 CL0014
Cotton_A_26554_CDS 85 396 78 403 PF00294.24 PfkB Family 10 294 302 108.9 2.9e-31 1 CL0118
Cotton_A_23399_CDS 60 208 58 211 PF02878.16 PGM_PMM_I Domain 3 135 138 97.2 6.5e-28 1 No_clan
Cotton_A_23399_CDS 233 338 231 338 PF02879.16 PGM_PMM_II Domain 3 103 103 73.0 2.6e-20 1 No_clan
Cotton_A_23399_CDS 343 446 342 464 PF02880.16 PGM_PMM_III Domain 2 98 114 49.3 4.7e-13 1 No_clan
Cotton_A_04747_CDS 27 204 27 208 PF01012.21 ETF Domain 1 178 182 114.3 5.7e-33 1 CL0039
Cotton_A_04747_CDS 230 312 229 312 PF00766.19 ETF_alpha Domain 2 84 84 121.3 1.2e-35 1 CL0085
Cotton_A_18919_CDS 122 226 121 226 PF03168.13 LEA_2 Domain 2 101 101 29.0 1.2e-06 1 CL0159
Cotton_A_11488_CDS 23 58 5 62 PF07647.17 SAM_2 Domain 24 60 66 23.6 4e-05 1 CL0003
Cotton_A_33309_CDS 43 159 43 159 PF16983.5 MFS_MOT1 Family 1 111 111 103.0 1.1e-29 1 CL0062
Cotton_A_33309_CDS 282 400 281 400 PF16983.5 MFS_MOT1 Family 2 111 111 113.8 5.1e-33 1 CL0062
Cotton_A_15206_CDS 22 95 20 103 PF00238.19 Ribosomal_L14 Domain 4 76 122 60.2 1.9e-16 1 No_clan
Cotton_A_16583_CDS 123 276 123 276 PF09416.10 UPF1_Zn_bind Domain 1 152 152 234.9 3.3e-70 1 CL0229
Cotton_A_16583_CDS 328 417 328 417 PF18141.1 DUF5599 Domain 1 93 93 111.8 1.4e-32 1 No_clan
Cotton_A_16583_CDS 475 546 471 643 PF04851.15 ResIII Family 5 75 171 24.5 2.3e-05 1 CL0023
Cotton_A_16583_CDS 576 676 571 678 PF13086.6 AAA_11 Domain 157 259 261 98.6 5e-28 1 CL0023
Cotton_A_16583_CDS 686 881 685 882 PF13087.6 AAA_12 Domain 2 198 199 200.0 3e-59 1 CL0023
Cotton_A_11197_CDS 69 202 69 206 PF00685.27 Sulfotransfer_1 Domain 1 148 267 86.1 2.8e-24 1 CL0023
Cotton_A_11197_CDS 213 296 210 296 PF00685.27 Sulfotransfer_1 Domain 192 267 267 63.0 2.9e-17 1 CL0023
Cotton_A_13542_CDS 72 123 72 123 PF12906.7 RINGv Domain 1 48 48 36.9 2.9e-09 1 CL0229
Cotton_A_35812_CDS 121 167 121 180 PF02933.17 CDC48_2 Domain 1 46 64 26.6 3.8e-06 1 CL0402
Cotton_A_35812_CDS 256 396 256 397 PF00004.29 AAA Domain 1 131 132 134.2 3.6e-39 1 CL0023
Cotton_A_35812_CDS 423 478 423 480 PF17862.1 AAA_lid_3 Domain 1 43 45 43.5 1.9e-11 1 CL0671
Cotton_A_35812_CDS 532 638 531 652 PF00004.29 AAA Domain 10 117 132 25.7 1.2e-05 1 CL0023
Cotton_A_12566_CDS 39 129 39 138 PF00314.17 Thaumatin Domain 1 88 214 85.0 5.4e-24 1 CL0293
Cotton_A_40766_CDS 76 207 74 208 PF03004.14 Transposase_24 Family 3 141 142 71.4 8e-20 1 No_clan
Cotton_A_36660_CDS 4 214 4 215 PF00091.25 Tubulin Domain 1 196 197 237.5 1.4e-70 1 CL0566
Cotton_A_36660_CDS 264 393 264 395 PF03953.17 Tubulin_C Domain 1 124 126 153.8 2.3e-45 1 CL0442
Cotton_A_15708_CDS 529 679 529 697 PF04548.16 AIG1 Domain 1 142 212 78.5 4.4e-22 1 CL0023
Cotton_A_15708_CDS 895 1159 894 1160 PF11886.8 TOC159_MAD Family 2 266 267 428.4 6.8e-129 1 No_clan
Cotton_A_00360_CDS 23 65 23 70 PF04145.15 Ctr Family 1 43 148 29.6 8.9e-07 1 No_clan
Cotton_A_00360_CDS 80 122 69 122 PF04145.15 Ctr Family 106 148 148 39.9 6.2e-10 1 No_clan
Cotton_A_22722_CDS 147 399 145 423 PF00069.25 Pkinase Domain 3 254 264 139.6 1.2e-40 1 CL0016
Cotton_A_01650_CDS 143 231 129 233 PF00651.31 BTB Domain 22 108 111 20.9 0.00033 1 CL0033
Cotton_A_00482_CDS 150 333 143 335 PF00544.19 Pec_lyase_C Domain 28 209 211 80.7 1.1e-22 1 CL0268
Cotton_A_18090_CDS 105 203 75 205 PF00782.20 DSPc Domain 33 131 133 64.4 9.1e-18 1 CL0031
Cotton_A_22797_CDS 181 200 179 203 PF05553.11 DUF761 Family 3 22 36 30.8 1.5e-07 1 No_clan
Cotton_A_00068_CDS 112 135 110 136 PF00642.24 zf-CCCH Family 3 26 27 35.3 7.7e-09 1 CL0537
Cotton_A_18387_CDS 127 303 126 304 PF00551.19 Formyl_trans_N Domain 2 180 181 109.9 1.2e-31 1 No_clan
Cotton_A_03295_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 48.2 8.7e-13 1 CL0123
Cotton_A_03295_CDS 71 111 67 112 PF00249.31 Myb_DNA-binding Domain 5 45 46 49.4 3.7e-13 1 CL0123
Cotton_A_15373_CDS 70 92 70 92 PF02493.20 MORN Repeat 1 23 23 26.3 4.4e-06 1 CL0251
Cotton_A_15373_CDS 93 114 93 115 PF02493.20 MORN Repeat 1 22 23 22.0 0.0001 1 CL0251
Cotton_A_15373_CDS 116 138 116 138 PF02493.20 MORN Repeat 1 23 23 24.3 1.9e-05 1 CL0251
Cotton_A_15373_CDS 139 160 139 161 PF02493.20 MORN Repeat 1 22 23 21.4 0.00015 1 CL0251
Cotton_A_15373_CDS 162 183 162 184 PF02493.20 MORN Repeat 1 22 23 25.5 8e-06 1 CL0251
Cotton_A_15373_CDS 185 207 185 207 PF02493.20 MORN Repeat 1 23 23 27.9 1.4e-06 1 CL0251
Cotton_A_15373_CDS 208 229 208 230 PF02493.20 MORN Repeat 1 22 23 26.0 5.2e-06 1 CL0251
Cotton_A_15373_CDS 447 514 444 530 PF01504.18 PIP5K Family 5 72 274 90.3 1.2e-25 1 CL0016
Cotton_A_09387_CDS 1 57 1 58 PF04758.14 Ribosomal_S30 Family 1 57 58 107.2 3.4e-31 1 No_clan
Cotton_A_41105_CDS 239 487 239 487 PF03372.23 Exo_endo_phos Domain 1 233 233 70.1 1.9e-19 1 CL0530
Cotton_A_33733_CDS 17 153 7 153 PF02536.14 mTERF Family 180 314 314 67.9 6.9e-19 1 No_clan
Cotton_A_14940_CDS 10 301 10 301 PF05623.12 DUF789 Family 1 294 294 346.0 2.2e-103 1 No_clan
Cotton_A_06720_CDS 82 138 79 138 PF07333.12 SLR1-BP Domain 4 58 58 23.1 7.4e-05 1 CL0054
Cotton_A_16635_CDS 23 203 23 209 PF08449.11 UAA Family 1 188 302 173.5 5.9e-51 1 CL0184
Cotton_A_11878_CDS 35 368 35 368 PF04124.12 Dor1 Family 1 338 338 493.7 1.8e-148 1 CL0295
Cotton_A_31137_CDS 147 231 140 236 PF12796.7 Ank_2 Repeat 8 78 83 34.4 2.5e-08 1 CL0465
Cotton_A_31137_CDS 245 334 243 337 PF12796.7 Ank_2 Repeat 3 81 83 69.0 4.1e-19 1 CL0465
Cotton_A_31137_CDS 364 455 364 456 PF12796.7 Ank_2 Repeat 1 82 83 65.7 4.2e-18 1 CL0465
Cotton_A_13568_CDS 143 367 141 367 PF03407.16 Nucleotid_trans Family 3 212 212 183.0 7.2e-54 1 CL0110
Cotton_A_13104_CDS 58 238 56 251 PF05724.11 TPMT Family 3 196 218 166.8 5.3e-49 1 CL0063
Cotton_A_14607_CDS 950 1079 950 1081 PF00004.29 AAA Domain 1 130 132 125.3 2.1e-36 1 CL0023
Cotton_A_14607_CDS 1103 1139 1103 1172 PF17862.1 AAA_lid_3 Domain 1 37 45 44.3 1.1e-11 1 CL0671
Cotton_A_05959_CDS 149 229 149 231 PF13225.6 DUF4033 Family 1 87 89 116.0 5.5e-34 1 No_clan
Cotton_A_32186_CDS 10 57 10 57 PF00319.18 SRF-TF Domain 1 48 48 86.1 7.7e-25 1 No_clan
Cotton_A_32186_CDS 82 158 79 170 PF01486.17 K-box Family 4 80 93 54.3 1.1e-14 1 No_clan
Cotton_A_07838_CDS 76 261 76 263 PF02190.16 LON_substr_bdg Family 1 206 208 92.0 4.6e-26 1 CL0178
Cotton_A_12024_CDS 35 149 35 191 PF05978.16 UNC-93 Family 1 125 157 50.4 2e-13 1 CL0015
Cotton_A_16665_CDS 77 167 77 179 PF01453.24 B_lectin Domain 1 94 105 74.5 8.5e-21 1 No_clan
Cotton_A_16665_CDS 254 317 218 318 PF00954.20 S_locus_glycop Domain 48 110 111 34.5 2.4e-08 1 No_clan
Cotton_A_16665_CDS 515 788 513 791 PF00069.25 Pkinase Domain 4 260 264 182.9 7.2e-54 1 CL0016
Cotton_A_10219_CDS 20 77 20 77 PF08031.12 BBE Domain 1 46 46 72.5 2.2e-20 1 CL0277
Cotton_A_41110_CDS 8 171 1 174 PF01490.18 Aa_trans Family 64 249 409 34.3 1e-08 1 CL0062
Cotton_A_12433_CDS 25 113 25 114 PF02727.16 Cu_amine_oxidN2 Domain 1 86 87 73.0 1.7e-20 1 CL0047
Cotton_A_12433_CDS 120 217 120 217 PF02728.16 Cu_amine_oxidN3 Domain 1 101 101 91.1 4.7e-26 1 CL0047
Cotton_A_12433_CDS 237 601 233 607 PF01179.20 Cu_amine_oxid Domain 5 359 410 349.6 2.3e-104 1 CL0103
Cotton_A_16360_CDS 32 45 31 47 PF13516.6 LRR_6 Repeat 2 15 24 9.8 0.84 1 CL0022
Cotton_A_16360_CDS 85 99 85 100 PF13516.6 LRR_6 Repeat 3 17 24 9.3 1.3 1 CL0022
Cotton_A_16360_CDS 134 148 132 149 PF13516.6 LRR_6 Repeat 3 17 24 11.6 0.24 1 CL0022
Cotton_A_16360_CDS 160 180 160 180 PF00560.33 LRR_1 Repeat 1 21 23 10.8 0.61 1 CL0022
Cotton_A_16360_CDS 249 264 249 266 PF13516.6 LRR_6 Repeat 2 17 24 10.2 0.67 1 CL0022
Cotton_A_16360_CDS 300 321 296 321 PF00560.33 LRR_1 Repeat 2 23 23 9.8 1.3 1 CL0022
Cotton_A_16360_CDS 394 452 392 452 PF13855.6 LRR_8 Repeat 3 61 61 42.6 3.8e-11 1 CL0022
Cotton_A_36013_CDS 9 43 6 46 PF00646.33 F-box Domain 11 45 48 23.0 5.3e-05 1 CL0271
Cotton_A_33818_CDS 92 308 92 308 PF07722.13 Peptidase_C26 Domain 1 216 216 57.2 1.9e-15 1 CL0014
Cotton_A_34156_CDS 82 314 81 319 PF05057.14 DUF676 Family 2 214 219 206.5 3.4e-61 1 CL0028
Cotton_A_01260_CDS 7 170 6 172 PF06364.12 DUF1068 Family 2 166 168 234.4 6.4e-70 1 No_clan
Cotton_A_24861_CDS 47 202 46 202 PF00582.26 Usp Domain 2 141 141 106.6 1.5e-30 1 CL0039
Cotton_A_18864_CDS 376 398 347 409 PF16135.5 Jas Family 42 64 76 26.9 4.1e-06 1 No_clan
Cotton_A_00984_CDS 5 90 5 104 PF02362.21 B3 Family 1 86 101 55.2 4.9e-15 1 CL0405
Cotton_A_07305_CDS 108 404 108 406 PF02383.18 Syja_N Family 1 318 320 257.7 1.6e-76 1 CL0031
Cotton_A_29134_CDS 165 518 163 518 PF12739.7 TRAPPC-Trs85 Family 3 406 406 270.8 2e-80 1 No_clan
Cotton_A_14984_CDS 24 303 21 305 PF03096.14 Ndr Domain 4 281 283 341.5 2.2e-102 1 CL0028
Cotton_A_19649_CDS 220 363 123 375 PF00201.18 UDPGT Family 267 398 499 97.9 5.8e-28 1 CL0113
Cotton_A_22825_CDS 20 317 19 318 PF00248.21 Aldo_ket_red Domain 2 293 294 187.6 2.8e-55 1 No_clan
Cotton_A_27958_CDS 93 222 81 294 PF13347.6 MFS_2 Family 16 129 427 32.4 3.6e-08 1 CL0015
Cotton_A_13716_CDS 109 205 91 205 PF03099.19 BPL_LplA_LipB Domain 26 131 131 38.5 9.5e-10 1 CL0040
Cotton_A_32042_CDS 158 217 157 217 PF13855.6 LRR_8 Repeat 2 61 61 34.5 1.3e-08 1 CL0022
Cotton_A_32042_CDS 252 310 251 311 PF13855.6 LRR_8 Repeat 2 60 61 39.5 3.5e-10 1 CL0022
Cotton_A_05878_CDS 122 212 109 213 PF03754.13 DUF313 Family 15 112 113 62.6 3.7e-17 1 CL0405
Cotton_A_33190_CDS 29 93 26 93 PF02874.23 ATP-synt_ab_N Domain 5 69 69 59.5 3.3e-16 1 CL0275
Cotton_A_33190_CDS 150 365 150 365 PF00006.25 ATP-synt_ab Domain 1 213 213 252.8 2.5e-75 1 CL0023
Cotton_A_33190_CDS 372 496 372 497 PF00306.27 ATP-synt_ab_C Domain 1 125 126 141.6 1.5e-41 1 No_clan
Cotton_A_39172_CDS 1 58 1 58 PF01058.22 Oxidored_q6 Family 70 131 131 33.8 2.5e-08 1 No_clan
Cotton_A_39172_CDS 58 121 53 122 PF02823.16 ATP-synt_DE_N Domain 15 79 80 39.0 5.4e-10 1 No_clan
Cotton_A_09748_CDS 1 485 1 485 PF05695.12 DUF825 Family 223 709 1486 1068.3 0 1 No_clan
Cotton_A_13001_CDS 20 41 19 41 PF01754.16 zf-A20 Family 2 23 24 38.2 9.8e-10 1 No_clan
Cotton_A_13001_CDS 125 162 125 162 PF01428.16 zf-AN1 Family 1 40 40 39.6 4.2e-10 1 No_clan
Cotton_A_38004_CDS 55 111 55 111 PF08246.12 Inhibitor_I29 Domain 1 58 58 41.4 1.5e-10 1 No_clan
Cotton_A_38004_CDS 138 361 138 363 PF00112.23 Peptidase_C1 Domain 1 216 218 242.5 5e-72 1 CL0125
Cotton_A_07859_CDS 23 119 21 119 PF00507.19 Oxidored_q4 Family 3 99 99 120.5 2.8e-35 1 No_clan
Cotton_A_31395_CDS 205 287 205 287 PF06507.13 Auxin_resp Family 1 83 83 117.9 1.8e-34 1 No_clan
Cotton_A_31395_CDS 495 537 456 547 PF02309.16 AUX_IAA Family 118 162 237 26.4 5.4e-06 1 CL0072
Cotton_A_31395_CDS 546 591 538 592 PF02309.16 AUX_IAA Family 192 236 237 28.1 1.7e-06 1 CL0072
Cotton_A_04226_CDS 91 490 86 490 PF00450.22 Peptidase_S10 Domain 7 419 419 440.8 6.9e-132 1 CL0028
Cotton_A_18910_CDS 65 226 64 230 PF00270.29 DEAD Domain 2 171 176 136.0 1.1e-39 1 CL0023
Cotton_A_18910_CDS 266 374 265 374 PF00271.31 Helicase_C Family 2 111 111 100.6 6.2e-29 1 CL0023
Cotton_A_38210_CDS 104 264 104 264 PF04759.13 DUF617 Family 1 163 163 235.9 2.3e-70 1 No_clan
Cotton_A_17352_CDS 762 807 761 807 PF07496.15 zf-CW Domain 2 48 48 49.7 2.7e-13 1 No_clan
Cotton_A_17352_CDS 889 924 887 924 PF17907.1 AWS Domain 4 39 39 46.3 3.1e-12 1 No_clan
Cotton_A_17352_CDS 938 1044 938 1044 PF00856.28 SET Family 1 169 169 66.6 3.3e-18 1 No_clan
Cotton_A_10632_CDS 72 173 55 181 PF00481.21 PP2C Family 36 142 258 37.4 2.2e-09 1 CL0238
Cotton_A_10632_CDS 200 255 186 255 PF00481.21 PP2C Family 199 258 258 41.0 1.7e-10 1 CL0238
Cotton_A_32488_CDS 110 135 110 136 PF13912.6 zf-C2H2_6 Domain 1 26 27 50.4 1.5e-13 1 CL0361
Cotton_A_32488_CDS 169 192 168 194 PF13912.6 zf-C2H2_6 Domain 2 25 27 42.9 3.2e-11 1 CL0361
Cotton_A_05825_CDS 79 363 79 363 PF00069.25 Pkinase Domain 1 264 264 224.1 2e-66 1 CL0016
Cotton_A_22739_CDS 8 121 8 121 PF16906.5 Ribosomal_L26 Family 1 82 82 129.8 4e-38 1 No_clan
Cotton_A_22739_CDS 51 82 51 82 PF00467.29 KOW Family 1 32 32 36.6 2.8e-09 1 CL0107
Cotton_A_16806_CDS 432 465 428 465 PF00400.32 WD40 Repeat 6 38 38 25.2 2.1e-05 1 CL0186
Cotton_A_16806_CDS 540 576 539 576 PF00400.32 WD40 Repeat 2 38 38 31.4 2.3e-07 1 CL0186
Cotton_A_16806_CDS 581 618 580 618 PF00400.32 WD40 Repeat 2 38 38 19.2 0.0016 1 CL0186
Cotton_A_01173_CDS 54 112 54 112 PF03106.15 WRKY Domain 1 59 59 82.7 1.6e-23 1 CL0274
Cotton_A_13331_CDS 2 302 1 305 PF00450.22 Peptidase_S10 Domain 60 370 419 317.9 1.3e-94 1 CL0028
Cotton_A_08241_CDS 23 108 22 109 PF00855.17 PWWP Domain 2 95 96 60.2 1.9e-16 1 CL0049
Cotton_A_15342_CDS 4 85 2 86 PF00276.20 Ribosomal_L23 Family 3 84 86 68.0 6.8e-19 1 No_clan
Cotton_A_27269_CDS 12 302 12 302 PF00069.25 Pkinase Domain 1 264 264 201.5 1.5e-59 1 CL0016
Cotton_A_40281_CDS 170 243 170 267 PF03109.16 ABC1 Family 1 73 119 78.8 3.5e-22 1 CL0016
Cotton_A_11413_CDS 44 448 42 454 PF01490.18 Aa_trans Family 3 403 409 197.9 2.3e-58 1 CL0062
Cotton_A_28703_CDS 57 219 56 222 PF00270.29 DEAD Domain 2 173 176 142.6 1e-41 1 CL0023
Cotton_A_28703_CDS 258 370 257 370 PF00271.31 Helicase_C Family 2 111 111 97.1 7.3e-28 1 CL0023
Cotton_A_00927_CDS 12 213 12 214 PF02431.15 Chalcone Domain 1 202 203 344.1 2e-103 1 CL0560
Cotton_A_14031_CDS 310 486 309 494 PF01189.17 Methyltr_RsmB-F Family 2 155 200 77.5 1e-21 1 CL0063
Cotton_A_12380_CDS 43 132 32 132 PF04520.13 Senescence_reg Family 74 168 168 80.5 2.4e-22 1 No_clan
Cotton_A_03348_CDS 14 63 14 65 PF00847.20 AP2 Domain 1 52 54 37.5 2.1e-09 1 CL0081
Cotton_A_40627_CDS 108 299 105 299 PF01545.21 Cation_efflux Family 4 199 199 88.3 5.5e-25 1 No_clan
Cotton_A_40627_CDS 306 379 303 380 PF16916.5 ZT_dimer Domain 4 77 79 30.6 2.8e-07 1 No_clan
Cotton_A_15011_CDS 287 442 275 442 PF11816.8 DUF3337 Family 33 172 172 95.0 4.6e-27 1 No_clan
Cotton_A_15588_CDS 6 69 6 69 PF00226.31 DnaJ Domain 1 63 63 80.4 7.7e-23 1 CL0392
Cotton_A_15588_CDS 134 323 134 327 PF14308.6 DnaJ-X Domain 1 201 211 170.3 3.6e-50 1 No_clan
Cotton_A_20224_CDS 58 165 55 167 PF13426.7 PAS_9 Domain 4 99 104 63.3 2.1e-17 1 CL0183
Cotton_A_20224_CDS 214 252 213 259 PF00646.33 F-box Domain 3 40 48 19.8 0.00054 1 CL0271
Cotton_A_20224_CDS 308 358 307 358 PF13418.6 Kelch_4 Repeat 2 49 49 42.1 6.1e-11 1 CL0186
Cotton_A_20224_CDS 373 419 372 420 PF13415.6 Kelch_3 Domain 4 48 49 43.8 2.1e-11 1 CL0186
Cotton_A_20224_CDS 422 473 422 473 PF13415.6 Kelch_3 Domain 1 49 49 36.0 6.1e-09 1 CL0186
Cotton_A_20224_CDS 532 579 531 579 PF07646.15 Kelch_2 Repeat 2 49 49 25.4 9.7e-06 1 CL0186
Cotton_A_27164_CDS 3 37 1 38 PF08246.12 Inhibitor_I29 Domain 22 56 58 27.7 2.8e-06 1 No_clan
Cotton_A_27164_CDS 91 245 90 246 PF00112.23 Peptidase_C1 Domain 63 217 218 143.0 1.4e-41 1 CL0125
Cotton_A_30706_CDS 61 311 36 316 PF00481.21 PP2C Family 29 255 258 131.8 3.4e-38 1 CL0238
Cotton_A_04995_CDS 112 176 112 176 PF00333.20 Ribosomal_S5 Domain 1 65 65 82.5 1.5e-23 1 CL0196
Cotton_A_04995_CDS 189 259 188 259 PF03719.15 Ribosomal_S5_C Domain 2 72 72 87.5 2.9e-25 1 CL0329
Cotton_A_33589_CDS 36 115 36 117 PF16845.5 SQAPI Domain 1 81 83 129.4 4.7e-38 1 CL0121
Cotton_A_12226_CDS 39 205 35 223 PF00551.19 Formyl_trans_N Domain 4 162 181 116.7 9.7e-34 1 No_clan
Cotton_A_12226_CDS 251 361 251 362 PF02911.18 Formyl_trans_C Domain 1 99 100 59.9 2.2e-16 1 No_clan
Cotton_A_04525_CDS 6 140 3 144 PF00394.22 Cu-oxidase Domain 5 157 159 83.3 2e-23 1 CL0026
Cotton_A_29774_CDS 90 303 90 315 PF04012.12 PspA_IM30 Family 1 218 221 186.2 6.2e-55 1 CL0235
Cotton_A_01046_CDS 8 51 6 52 PF03107.16 C1_2 Domain 3 46 47 42.0 8.7e-11 1 CL0006
Cotton_A_01046_CDS 63 106 62 106 PF03107.16 C1_2 Domain 2 47 47 27.9 2.1e-06 1 CL0006
Cotton_A_15169_CDS 82 120 67 121 PF00076.22 RRM_1 Domain 30 69 70 28.1 1.3e-06 1 CL0221
Cotton_A_15169_CDS 149 164 148 165 PF00098.23 zf-CCHC Domain 2 17 18 27.3 2.4e-06 1 CL0511
Cotton_A_15169_CDS 170 186 170 187 PF00098.23 zf-CCHC Domain 1 17 18 22.3 9.2e-05 1 CL0511
Cotton_A_30589_CDS 14 232 11 232 PF00230.20 MIP Family 4 227 227 259.1 3.7e-77 1 No_clan
Cotton_A_35818_CDS 38 75 38 75 PF12907.7 zf-met2 Family 1 38 38 71.7 3.8e-20 1 CL0361
Cotton_A_25872_CDS 18 42 10 175 PF05097.12 DUF688 Family 60 84 446 20.5 0.00023 1 No_clan
Cotton_A_32611_CDS 288 547 286 549 PF00069.25 Pkinase Domain 3 259 264 146.9 7.1e-43 1 CL0016
Cotton_A_24014_CDS 159 229 158 229 PF07983.13 X8 Domain 2 76 76 74.3 9e-21 1 No_clan
Cotton_A_33420_CDS 3 37 1 41 PF06364.12 DUF1068 Family 31 66 168 25.4 1.1e-05 1 No_clan
Cotton_A_33420_CDS 96 200 96 207 PF13793.6 Pribosyltran_N Domain 1 104 116 145.3 6.8e-43 1 CL0533
Cotton_A_01459_CDS 43 251 41 252 PF00149.28 Metallophos Domain 3 203 204 74.3 1.9e-20 1 CL0163
Cotton_A_27082_CDS 2 58 1 58 PF13855.6 LRR_8 Repeat 5 61 61 27.8 1.5e-06 1 CL0022
Cotton_A_27082_CDS 271 442 267 448 PF00069.25 Pkinase Domain 5 169 264 127.1 7.8e-37 1 CL0016
Cotton_A_13628_CDS 29 154 2 154 PF08613.11 Cyclin Family 34 161 161 136.1 1.4e-39 1 CL0065
Cotton_A_20546_CDS 29 118 28 125 PF08797.11 HIRAN Domain 2 91 96 66.6 1.4e-18 1 No_clan
Cotton_A_33201_CDS 321 567 320 575 PF01697.27 Glyco_transf_92 Domain 2 251 260 149.5 1.3e-43 1 CL0110
Cotton_A_32282_CDS 1 140 1 142 PF01217.20 Clat_adaptor_s Domain 1 140 142 181.7 6.6e-54 1 CL0212
Cotton_A_08308_CDS 2 226 2 226 PF12481.8 DUF3700 Domain 1 228 228 302.4 1.8e-90 1 CL0052
Cotton_A_08308_CDS 309 378 309 379 PF00076.22 RRM_1 Domain 1 69 70 63.3 1.4e-17 1 CL0221
Cotton_A_02142_CDS 1 123 1 164 PF05667.11 DUF812 Family 1 116 595 83.6 1.5e-23 1 No_clan
Cotton_A_02142_CDS 210 491 135 493 PF05667.11 DUF812 Family 315 593 595 151.9 3.1e-44 1 No_clan
Cotton_A_25428_CDS 52 94 51 95 PF00249.31 Myb_DNA-binding Domain 3 45 46 26.3 6.2e-06 1 CL0123
Cotton_A_20543_CDS 2 77 1 77 PF05922.16 Inhibitor_I9 Domain 2 82 82 49.6 4.7e-13 1 CL0570
Cotton_A_20543_CDS 107 560 105 573 PF00082.22 Peptidase_S8 Domain 3 285 298 161.4 2.9e-47 1 No_clan
Cotton_A_20543_CDS 629 726 629 726 PF17766.1 fn3_6 Domain 1 99 99 77.1 9.1e-22 1 CL0159
Cotton_A_03652_CDS 17 85 2 93 PF00777.18 Glyco_transf_29 Family 39 110 269 44.1 1.7e-11 1 No_clan
Cotton_A_18772_CDS 99 201 99 201 PF08414.10 NADPH_Ox Family 1 101 101 131.8 9.8e-39 1 CL0220
Cotton_A_18772_CDS 361 518 360 518 PF01794.19 Ferric_reduct Family 2 125 125 79.6 2.1e-22 1 CL0328
Cotton_A_18772_CDS 560 673 559 674 PF08022.12 FAD_binding_8 Domain 2 108 109 120.5 3.2e-35 1 CL0076
Cotton_A_18772_CDS 680 854 680 855 PF08030.12 NAD_binding_6 Domain 1 155 156 176.2 4.7e-52 1 CL0091
Cotton_A_07625_CDS 10 41 10 41 PF03604.13 DNA_RNApol_7kD Domain 1 32 32 61.9 3.2e-17 1 CL0167
Cotton_A_11782_CDS 5 94 1 97 PF10536.9 PMD Domain 96 178 363 44.5 1.1e-11 1 No_clan
Cotton_A_12399_CDS 81 138 80 138 PF03106.15 WRKY Domain 2 59 59 89.8 9.8e-26 1 CL0274
Cotton_A_28125_CDS 12 232 11 232 PF00230.20 MIP Family 2 227 227 249.9 2.4e-74 1 No_clan
Cotton_A_23269_CDS 3 135 1 136 PF14111.6 DUF4283 Domain 11 143 145 124.2 2.9e-36 1 No_clan
Cotton_A_23944_CDS 76 133 72 140 PF00892.20 EamA Family 79 130 137 27.9 2.2e-06 1 CL0184
Cotton_A_23944_CDS 171 308 169 309 PF00892.20 EamA Family 3 136 137 43.1 4.4e-11 1 CL0184
Cotton_A_31534_CDS 1 67 1 67 PF11820.8 DUF3339 Family 1 67 67 122.3 6.7e-36 1 No_clan
Cotton_A_02483_CDS 29 74 29 76 PF00249.31 Myb_DNA-binding Domain 3 44 46 24.5 2.3e-05 1 CL0123
Cotton_A_02483_CDS 127 171 125 172 PF00249.31 Myb_DNA-binding Domain 3 45 46 43.5 2.6e-11 1 CL0123
Cotton_A_23926_CDS 40 120 35 121 PF12643.7 MazG-like Domain 6 84 85 33.0 5.3e-08 1 CL0231
Cotton_A_18863_CDS 67 157 67 185 PF02362.21 B3 Family 1 84 101 31.7 1e-07 1 CL0405
Cotton_A_20313_CDS 10 66 8 68 PF05030.12 SSXT Family 4 60 62 68.0 4e-19 1 No_clan
Cotton_A_35861_CDS 4 316 3 357 PF00743.19 FMO-like Family 2 332 532 93.1 1.3e-26 1 CL0063
Cotton_A_23881_CDS 59 185 59 185 PF04749.17 PLAC8 Family 1 99 99 83.1 2.3e-23 1 No_clan
Cotton_A_20914_CDS 6 52 1 52 PF07765.12 KIP1 Family 18 74 74 27.9 1.8e-06 1 No_clan
Cotton_A_28228_CDS 7 129 7 129 PF02365.15 NAM Family 1 126 126 60.3 3.3e-16 1 No_clan
Cotton_A_27037_CDS 1 111 1 112 PF00297.22 Ribosomal_L3 Family 1 112 369 165.3 1.9e-48 1 CL0575
Cotton_A_14822_CDS 45 92 45 92 PF00249.31 Myb_DNA-binding Domain 1 46 46 43.0 3.8e-11 1 CL0123
Cotton_A_14822_CDS 98 141 98 142 PF00249.31 Myb_DNA-binding Domain 1 44 46 49.7 3e-13 1 CL0123
Cotton_A_12145_CDS 38 145 38 147 PF00636.26 Ribonuclease_3 Family 1 103 105 75.7 3.8e-21 1 CL0539
Cotton_A_12145_CDS 176 236 176 236 PF00035.26 dsrm Domain 1 67 67 21.7 0.00024 1 CL0196
Cotton_A_12145_CDS 260 332 259 332 PF14709.7 DND1_DSRM Domain 2 80 80 51.3 1e-13 1 CL0196
Cotton_A_32709_CDS 252 505 252 505 PF04646.12 DUF604 Family 1 256 256 391.7 1.4e-117 1 CL0110
Cotton_A_07655_CDS 11 101 10 103 PF00071.22 Ras Domain 58 159 162 53.1 2.7e-14 1 CL0023
Cotton_A_03408_CDS 53 178 46 178 PF01814.23 Hemerythrin Domain 9 131 131 45.3 1.2e-11 1 No_clan
Cotton_A_03408_CDS 306 432 305 435 PF01814.23 Hemerythrin Domain 2 125 131 29.6 8.8e-07 1 No_clan
Cotton_A_03408_CDS 648 809 647 810 PF01814.23 Hemerythrin Domain 2 130 131 32.4 1.2e-07 1 No_clan
Cotton_A_03408_CDS 991 1066 991 1067 PF05495.12 zf-CHY Domain 1 74 75 68.4 5.7e-19 1 No_clan
Cotton_A_20378_CDS 35 76 34 76 PF08263.12 LRRNT_2 Family 2 41 41 34.0 2.7e-08 1 No_clan
Cotton_A_20378_CDS 269 284 268 291 PF13516.6 LRR_6 Repeat 2 17 24 9.2 1.3 1 CL0022
Cotton_A_20378_CDS 532 590 531 590 PF13855.6 LRR_8 Repeat 3 61 61 34.7 1.1e-08 1 CL0022
Cotton_A_20378_CDS 652 666 649 667 PF13516.6 LRR_6 Repeat 4 18 24 9.3 1.3 1 CL0022
Cotton_A_19585_CDS 111 154 111 157 PF13041.6 PPR_2 Repeat 1 44 50 37.2 2.5e-09 1 CL0020
Cotton_A_19585_CDS 185 209 185 212 PF01535.20 PPR Family 4 28 31 15.4 0.016 1 CL0020
Cotton_A_19585_CDS 211 254 210 258 PF13041.6 PPR_2 Repeat 2 45 50 41.7 9.4e-11 1 CL0020
Cotton_A_19585_CDS 316 336 314 344 PF01535.20 PPR Family 3 23 31 12.7 0.12 1 CL0020
Cotton_A_19585_CDS 386 411 383 413 PF01535.20 PPR Family 4 29 31 14.9 0.024 1 CL0020
Cotton_A_19585_CDS 414 444 414 444 PF01535.20 PPR Family 1 31 31 26.8 3.7e-06 1 CL0020
Cotton_A_19585_CDS 487 510 485 513 PF01535.20 PPR Family 3 26 31 13.8 0.051 1 CL0020
Cotton_A_07064_CDS 111 212 111 213 PF02362.21 B3 Family 1 100 101 76.4 1.2e-21 1 CL0405
Cotton_A_07064_CDS 267 350 267 350 PF06507.13 Auxin_resp Family 1 83 83 105.0 1.8e-30 1 No_clan
Cotton_A_02769_CDS 19 99 19 100 PF05495.12 zf-CHY Domain 1 74 75 74.2 8.4e-21 1 No_clan
Cotton_A_02769_CDS 154 196 154 196 PF00097.25 zf-C3HC4 Domain 1 41 41 24.9 1.4e-05 1 CL0229
Cotton_A_38755_CDS 12 129 12 176 PF13460.6 NAD_binding_10 Domain 2 102 184 35.2 1.1e-08 1 CL0063
Cotton_A_37921_CDS 48 96 48 97 PF00847.20 AP2 Domain 1 53 54 33.7 3.1e-08 1 CL0081
Cotton_A_00074_CDS 30 144 29 147 PF02996.17 Prefoldin Coiled-coil 2 117 120 80.2 1.1e-22 1 CL0200
Cotton_A_05673_CDS 154 256 154 256 PF08414.10 NADPH_Ox Family 1 101 101 137.4 1.7e-40 1 CL0220
Cotton_A_05673_CDS 668 783 667 784 PF08022.12 FAD_binding_8 Domain 2 108 109 110.3 4.9e-32 1 CL0076
Cotton_A_05673_CDS 790 894 790 899 PF08030.12 NAD_binding_6 Domain 1 66 156 67.2 1.8e-18 1 CL0091
Cotton_A_39645_CDS 20 451 18 452 PF04997.12 RNA_pol_Rpb1_1 Domain 3 311 312 93.9 1.1e-26 1 No_clan
Cotton_A_39645_CDS 454 638 454 639 PF00623.20 RNA_pol_Rpb1_2 Domain 1 165 166 198.5 8.6e-59 1 No_clan
Cotton_A_39645_CDS 642 853 642 853 PF04983.18 RNA_pol_Rpb1_3 Domain 1 157 157 109.4 1.6e-31 1 No_clan
Cotton_A_39645_CDS 919 1005 893 1005 PF05000.17 RNA_pol_Rpb1_4 Domain 27 108 108 72.7 2e-20 1 No_clan
Cotton_A_39645_CDS 1012 1231 1012 1238 PF04998.17 RNA_pol_Rpb1_5 Domain 1 144 267 207.1 3.3e-61 1 No_clan
Cotton_A_39946_CDS 162 477 161 664 PF03372.23 Exo_endo_phos Domain 2 199 233 49.2 4.8e-13 1 CL0530
Cotton_A_10595_CDS 23 181 22 181 PF05078.12 DUF679 Family 2 163 163 207.5 1.1e-61 1 No_clan
Cotton_A_24670_CDS 14 152 2 167 PF17177.4 PPR_long Domain 15 146 212 30.2 2.6e-07 1 CL0020
Cotton_A_24670_CDS 169 211 167 213 PF13041.6 PPR_2 Repeat 6 48 50 44.1 1.7e-11 1 CL0020
Cotton_A_06392_CDS 11 65 11 67 PF00412.22 LIM Domain 1 56 58 42.2 6.8e-11 1 CL0167
Cotton_A_06392_CDS 109 164 109 165 PF00412.22 LIM Domain 1 57 58 43.3 3.1e-11 1 CL0167
Cotton_A_39105_CDS 60 293 58 300 PF00977.21 His_biosynth Family 4 223 229 107.0 9.5e-31 1 CL0036
Cotton_A_03462_CDS 78 115 76 115 PF08263.12 LRRNT_2 Family 4 41 41 31.7 1.4e-07 1 No_clan
Cotton_A_03462_CDS 250 308 250 310 PF13855.6 LRR_8 Repeat 1 59 61 27.1 2.5e-06 1 CL0022
Cotton_A_03462_CDS 418 478 417 478 PF13855.6 LRR_8 Repeat 2 61 61 27.6 1.7e-06 1 CL0022
Cotton_A_03462_CDS 822 878 821 878 PF13855.6 LRR_8 Repeat 4 60 61 28.3 1.1e-06 1 CL0022
Cotton_A_07965_CDS 85 592 85 592 PF03141.16 Methyltransf_29 Family 1 506 506 706.8 1.3e-212 1 CL0063
Cotton_A_19819_CDS 944 1006 942 1023 PF13620.6 CarboxypepD_reg Domain 4 64 82 34.2 2.3e-08 1 CL0287
Cotton_A_32418_CDS 35 89 34 91 PF01301.19 Glyco_hydro_35 Domain 2 56 316 56.1 4.5e-15 1 CL0058
Cotton_A_19674_CDS 67 137 62 139 PF00203.21 Ribosomal_S19 Domain 6 79 81 76.8 8.5e-22 1 No_clan
Cotton_A_16979_CDS 102 559 102 559 PF03372.23 Exo_endo_phos Domain 1 233 233 65.5 5e-18 1 CL0530
Cotton_A_12820_CDS 29 102 28 102 PF05899.12 Cupin_3 Domain 2 74 74 100.8 2.4e-29 1 CL0029
Cotton_A_15207_CDS 16 176 16 177 PF00071.22 Ras Domain 1 161 162 210.2 1.3e-62 1 CL0023
Cotton_A_27502_CDS 98 211 92 215 PF00581.20 Rhodanese Domain 7 103 107 30.7 3.4e-07 1 CL0031
Cotton_A_32064_CDS 49 296 49 306 PF00067.22 p450 Domain 1 235 463 61.1 8e-17 1 No_clan
Cotton_A_13676_CDS 25 170 23 173 PF00407.19 Bet_v_1 Domain 4 148 151 43.9 2.1e-11 1 CL0209
Cotton_A_05049_CDS 355 388 355 389 PF00806.19 PUF Repeat 1 34 35 39.2 2.9e-10 1 CL0020
Cotton_A_05049_CDS 396 428 394 429 PF00806.19 PUF Repeat 3 34 35 24.6 1.3e-05 1 CL0020
Cotton_A_05049_CDS 432 465 431 465 PF00806.19 PUF Repeat 2 35 35 26.9 2.4e-06 1 CL0020
Cotton_A_05049_CDS 471 492 469 501 PF00806.19 PUF Repeat 5 26 35 22.8 4.9e-05 1 CL0020
Cotton_A_05049_CDS 511 528 509 537 PF00806.19 PUF Repeat 9 26 35 20.7 0.00022 1 CL0020
Cotton_A_05049_CDS 540 567 539 573 PF00806.19 PUF Repeat 2 29 35 19.6 0.0005 1 CL0020
Cotton_A_17154_CDS 51 210 51 211 PF01554.18 MatE Family 1 160 161 107.3 6e-31 1 CL0222
Cotton_A_17154_CDS 273 435 273 436 PF01554.18 MatE Family 1 160 161 100.7 6.4e-29 1 CL0222
Cotton_A_07101_CDS 11 99 4 99 PF14368.6 LTP_2 Family 7 97 97 61.6 5.8e-17 1 CL0482
Cotton_A_18560_CDS 26 84 21 84 PF02953.15 zf-Tim10_DDP Domain 6 64 64 65.0 3.6e-18 1 No_clan
Cotton_A_26706_CDS 43 85 38 87 PF02978.19 SRP_SPB Domain 56 97 99 27.5 3.6e-06 1 CL0123
Cotton_A_14318_CDS 26 78 26 78 PF00010.26 HLH Domain 1 53 53 41.5 9.8e-11 1 No_clan
Cotton_A_15159_CDS 75 237 69 238 PF00544.19 Pec_lyase_C Domain 31 210 211 100.2 1.2e-28 1 CL0268
Cotton_A_21883_CDS 47 223 46 223 PF01789.16 PsbP Domain 2 156 156 168.3 1.3e-49 1 CL0619
Cotton_A_13996_CDS 27 298 26 298 PF05910.12 DUF868 Family 2 279 279 346.5 1.3e-103 1 No_clan
Cotton_A_22710_CDS 63 199 63 207 PF00300.22 His_Phos_1 Domain 1 132 194 81.2 7.7e-23 1 CL0071
Cotton_A_36626_CDS 358 526 356 529 PF01612.20 DNA_pol_A_exo1 Domain 3 168 176 73.7 1.4e-20 1 CL0219
Cotton_A_21503_CDS 266 474 265 474 PF11926.8 DUF3444 Family 2 212 212 239.7 2.4e-71 1 No_clan
Cotton_A_00554_CDS 17 189 16 191 PF01595.20 DUF21 Domain 1 174 176 128.1 2.7e-37 1 No_clan
Cotton_A_38017_CDS 5 177 5 177 PF00025.21 Arf Domain 1 175 175 267.3 4.2e-80 1 CL0023
Cotton_A_03227_CDS 51 272 46 284 PF00294.24 PfkB Family 9 238 302 86.1 2.5e-24 1 CL0118
Cotton_A_03227_CDS 326 387 288 388 PF00294.24 PfkB Family 240 301 302 49.0 5.2e-13 1 CL0118
Cotton_A_26362_CDS 19 197 14 212 PF00067.22 p450 Domain 7 184 463 30.2 1.9e-07 1 No_clan
Cotton_A_00037_CDS 57 235 56 235 PF00479.22 G6PD_N Domain 2 177 177 198.0 1.9e-58 1 CL0063
Cotton_A_00037_CDS 238 532 237 533 PF02781.16 G6PD_C Domain 2 289 290 379.0 1.3e-113 1 CL0139
Cotton_A_27374_CDS 55 113 51 114 PF04083.16 Abhydro_lipase Family 5 63 64 67.5 5.4e-19 1 CL0028
Cotton_A_27956_CDS 116 186 114 186 PF03703.14 bPH_2 Domain 3 80 80 50.9 1.3e-13 1 CL0266
Cotton_A_18067_CDS 133 205 133 230 PF13649.6 Methyltransf_25 Domain 1 73 97 36.5 6e-09 1 CL0063
Cotton_A_25107_CDS 47 142 47 144 PF12894.7 ANAPC4_WD40 Repeat 1 90 92 21.5 0.00022 1 CL0186
Cotton_A_35366_CDS 92 121 91 121 PF01535.20 PPR Family 2 31 31 12.5 0.14 1 CL0020
Cotton_A_35366_CDS 123 172 123 172 PF13041.6 PPR_2 Repeat 1 50 50 49.5 3.5e-13 1 CL0020
Cotton_A_35366_CDS 188 221 188 221 PF12854.7 PPR_1 Repeat 1 34 34 35.4 6.3e-09 1 CL0020
Cotton_A_35366_CDS 228 276 227 276 PF13041.6 PPR_2 Repeat 2 50 50 55.9 3.5e-15 1 CL0020
Cotton_A_35366_CDS 297 346 297 346 PF13041.6 PPR_2 Repeat 1 50 50 33.4 3.8e-08 1 CL0020
Cotton_A_35366_CDS 398 424 398 429 PF12854.7 PPR_1 Repeat 1 27 34 24.1 2.1e-05 1 CL0020
Cotton_A_35366_CDS 435 465 435 465 PF01535.20 PPR Family 1 31 31 23.2 5.1e-05 1 CL0020
Cotton_A_35366_CDS 470 516 467 516 PF13041.6 PPR_2 Repeat 4 50 50 37.7 1.7e-09 1 CL0020
Cotton_A_35366_CDS 526 569 525 574 PF13812.6 PPR_3 Repeat 2 45 63 16.7 0.0058 1 CL0020
Cotton_A_30614_CDS 43 102 43 102 PF02704.14 GASA Family 1 60 60 79.2 1.9e-22 1 No_clan
Cotton_A_01134_CDS 4 61 4 63 PF00076.22 RRM_1 Domain 1 62 70 60.6 9.1e-17 1 CL0221
Cotton_A_01134_CDS 91 106 90 107 PF00098.23 zf-CCHC Domain 2 17 18 31.8 9.3e-08 1 CL0511
Cotton_A_25022_CDS 93 529 93 529 PF00854.21 PTR2 Family 1 395 395 267.9 1.3e-79 1 CL0015
Cotton_A_32687_CDS 17 227 17 227 PF01351.18 RNase_HII Family 1 198 198 176.9 4e-52 1 CL0219
Cotton_A_09231_CDS 66 124 66 126 PF07939.11 DUF1685 Family 1 58 60 87.9 2.6e-25 1 No_clan
Cotton_A_28649_CDS 15 395 15 396 PF00199.19 Catalase Domain 1 382 383 586.1 3.1e-176 1 No_clan
Cotton_A_28649_CDS 421 483 419 483 PF06628.12 Catalase-rel Family 4 65 65 63.4 1.6e-17 1 No_clan
Cotton_A_19178_CDS 12 122 11 125 PF01412.18 ArfGap Domain 2 114 117 99.3 1.4e-28 1 No_clan
Cotton_A_37253_CDS 130 189 129 189 PF13855.6 LRR_8 Repeat 2 61 61 28.1 1.3e-06 1 CL0022
Cotton_A_37253_CDS 383 583 380 637 PF00069.25 Pkinase Domain 4 199 264 95.1 4.3e-27 1 CL0016
Cotton_A_29655_CDS 58 118 58 119 PF03641.14 Lysine_decarbox Family 1 61 132 51.7 8.8e-14 1 CL0349
Cotton_A_30552_CDS 79 245 75 245 PF02222.22 ATP-grasp Family 7 171 171 170.3 2.7e-50 1 CL0179
Cotton_A_30552_CDS 272 334 272 335 PF17769.1 PurK_C Domain 1 55 56 59.4 1.9e-16 1 CL0105
Cotton_A_30552_CDS 351 427 339 429 PF00731.20 AIRC Domain 70 146 148 96.6 9.6e-28 1 No_clan
Cotton_A_02834_CDS 164 689 164 689 PF03141.16 Methyltransf_29 Family 1 506 506 467.5 4.6e-140 1 CL0063
Cotton_A_08209_CDS 238 283 234 286 PF04570.14 zf-FLZ Domain 6 51 54 75.8 1.3e-21 1 CL0175
Cotton_A_17164_CDS 94 221 89 224 PF00472.20 RF-1 Family 6 113 116 69.1 3e-19 1 CL0337
Cotton_A_03068_CDS 37 121 37 121 PF02298.17 Cu_bind_like Domain 1 84 84 89.2 1.3e-25 1 CL0026
Cotton_A_34541_CDS 27 113 18 117 PF10502.9 Peptidase_S26 Domain 42 133 138 52.8 3.3e-14 1 CL0299
Cotton_A_19048_CDS 38 109 37 109 PF02594.16 DUF167 Domain 2 77 77 82.0 2.4e-23 1 No_clan
Cotton_A_08655_CDS 3 183 2 233 PF01094.28 ANF_receptor Family 121 296 354 61.2 9.3e-17 1 CL0144
Cotton_A_34789_CDS 1 58 1 61 PF04564.15 U-box Domain 14 70 73 49.9 2.6e-13 1 CL0229
Cotton_A_38281_CDS 23 58 23 100 PF01193.24 RNA_pol_L Domain 1 36 69 20.9 0.00018 1 CL0509
Cotton_A_38959_CDS 29 225 28 227 PF00332.18 Glyco_hydro_17 Domain 2 198 313 148.1 4.3e-43 1 CL0058
Cotton_A_01513_CDS 33 263 33 274 PF00657.22 Lipase_GDSL Family 1 171 200 33.1 5.3e-08 1 CL0264
Cotton_A_24617_CDS 85 302 85 303 PF02536.14 mTERF Family 1 224 314 86.9 1.2e-24 1 No_clan
Cotton_A_24617_CDS 251 360 250 360 PF02536.14 mTERF Family 208 314 314 61.9 4.7e-17 1 No_clan
Cotton_A_15026_CDS 23 264 23 265 PF13561.6 adh_short_C2 Domain 1 233 234 198.9 8.5e-59 1 CL0063
Cotton_A_10649_CDS 150 328 149 328 PF00479.22 G6PD_N Domain 2 177 177 166.2 1.1e-48 1 CL0063
Cotton_A_10649_CDS 331 615 330 616 PF02781.16 G6PD_C Domain 2 289 290 292.0 4.4e-87 1 CL0139
Cotton_A_28045_CDS 2 108 1 109 PF12222.8 PNGaseA Family 99 200 434 67.4 1e-18 1 No_clan
Cotton_A_28045_CDS 109 260 108 272 PF12222.8 PNGaseA Family 244 414 434 89.9 1.6e-25 1 No_clan
Cotton_A_34171_CDS 14 103 14 103 PF00447.17 HSF_DNA-bind Domain 1 96 96 103.9 5.3e-30 1 CL0123
Cotton_A_01890_CDS 47 317 47 319 PF00149.28 Metallophos Domain 1 202 204 63.2 4.4e-17 1 CL0163
Cotton_A_03279_CDS 95 397 94 397 PF01218.18 Coprogen_oxidas Family 2 296 296 455.2 6.4e-137 1 No_clan
Cotton_A_17727_CDS 7 168 5 168 PF03467.15 Smg4_UPF3 Family 3 174 174 169.4 7.4e-50 1 CL0221
Cotton_A_26629_CDS 110 166 109 166 PF13855.6 LRR_8 Repeat 5 61 61 34.0 1.8e-08 1 CL0022
Cotton_A_35457_CDS 8 79 6 79 PF02798.20 GST_N Domain 3 76 76 66.1 2.6e-18 1 CL0172
Cotton_A_35457_CDS 122 197 99 198 PF00043.25 GST_C Domain 23 92 93 23.5 4.8e-05 1 CL0497
Cotton_A_23400_CDS 91 134 90 134 PF13639.6 zf-RING_2 Domain 2 44 44 51.4 1e-13 1 CL0229
Cotton_A_08871_CDS 180 226 179 234 PF01842.25 ACT Domain 2 51 67 30.2 2.7e-07 1 CL0070
Cotton_A_08871_CDS 293 542 293 542 PF07714.17 Pkinase_Tyr Domain 1 259 259 245.7 4.6e-73 1 CL0016
Cotton_A_13728_CDS 22 116 9 118 PF02365.15 NAM Family 13 124 126 32.5 1.4e-07 1 No_clan
Cotton_A_21749_CDS 22 469 19 469 PF06963.12 FPN1 Family 4 435 435 517.9 1.7e-155 1 CL0015
Cotton_A_01282_CDS 54 99 48 104 PF00403.26 HMA Domain 7 56 62 29.4 8.1e-07 1 No_clan
Cotton_A_07795_CDS 218 268 217 269 PF00847.20 AP2 Domain 2 53 54 38.3 1.1e-09 1 CL0081
Cotton_A_03223_CDS 70 506 68 506 PF02450.15 LCAT Family 4 392 392 423.2 1.1e-126 1 CL0028
Cotton_A_37699_CDS 3 67 1 76 PF00295.17 Glyco_hydro_28 Domain 263 323 325 46.6 2.3e-12 1 CL0268
Cotton_A_33046_CDS 38 496 38 506 PF00067.22 p450 Domain 1 452 463 337.6 1.1e-100 1 No_clan
Cotton_A_14949_CDS 94 264 89 264 PF16166.5 TIC20 Family 6 181 181 242.5 2.4e-72 1 No_clan
Cotton_A_01979_CDS 1 171 1 171 PF14009.6 DUF4228 Family 1 179 179 111.0 8.4e-32 1 No_clan
Cotton_A_03171_CDS 23 100 23 100 PF05922.16 Inhibitor_I9 Domain 1 82 82 65.7 4.6e-18 1 CL0570
Cotton_A_03171_CDS 130 582 129 587 PF00082.22 Peptidase_S8 Domain 2 291 298 170.2 6e-50 1 No_clan
Cotton_A_03171_CDS 386 456 371 457 PF02225.22 PA Family 20 88 89 39.1 5.5e-10 1 CL0364
Cotton_A_03171_CDS 657 754 657 755 PF17766.1 fn3_6 Domain 1 98 99 82.6 1.8e-23 1 CL0159
Cotton_A_21822_CDS 127 174 16 189 PF02517.16 CPBP Family 8 55 92 31.6 1.6e-07 1 CL0472
Cotton_A_28619_CDS 23 185 22 185 PF04862.12 DUF642 Domain 2 157 157 144.6 2.1e-42 1 CL0202
Cotton_A_28619_CDS 196 359 196 361 PF04862.12 DUF642 Domain 1 155 157 54.8 8.9e-15 1 CL0202
Cotton_A_08589_CDS 282 466 280 466 PF11721.8 Malectin Domain 3 165 165 129.3 1.4e-37 1 CL0202
Cotton_A_08589_CDS 551 636 548 707 PF07714.17 Pkinase_Tyr Domain 4 95 259 55.9 3.6e-15 1 CL0016
Cotton_A_35903_CDS 9 56 9 56 PF00319.18 SRF-TF Domain 1 48 48 87.9 2.2e-25 1 No_clan
Cotton_A_35903_CDS 85 171 80 172 PF01486.17 K-box Family 6 92 93 103.8 4.2e-30 1 No_clan
Cotton_A_32780_CDS 146 251 131 255 PF13692.6 Glyco_trans_1_4 Domain 32 128 134 33.2 6.2e-08 1 CL0113
Cotton_A_23190_CDS 127 176 126 177 PF00847.20 AP2 Domain 2 53 54 46.3 3.8e-12 1 CL0081
Cotton_A_09585_CDS 66 333 66 336 PF12697.7 Abhydrolase_6 Domain 1 217 220 43.8 4.4e-11 1 CL0028
Cotton_A_27343_CDS 10 129 10 129 PF02365.15 NAM Family 1 126 126 107.6 7.9e-31 1 No_clan
Cotton_A_35626_CDS 97 330 97 330 PF02358.16 Trehalose_PPase Family 1 233 233 257.0 1.1e-76 1 CL0137
Cotton_A_32456_CDS 21 70 21 84 PF05758.12 Ycf1 Family 1 50 945 71.5 3.7e-20 1 No_clan
Cotton_A_14897_CDS 203 283 200 305 PF03168.13 LEA_2 Domain 4 84 101 30.2 4.9e-07 1 CL0159
Cotton_A_00608_CDS 47 143 46 144 PF02519.14 Auxin_inducible Family 2 89 90 79.4 1.7e-22 1 No_clan
Cotton_A_22119_CDS 50 523 49 523 PF00501.28 AMP-binding Family 2 423 423 335.3 4.3e-100 1 CL0378
Cotton_A_22119_CDS 533 572 532 603 PF13193.6 AMP-binding_C Domain 2 50 76 25.9 1.5e-05 1 CL0531
Cotton_A_31811_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 40.8 1.8e-10 1 CL0123
Cotton_A_31811_CDS 67 111 67 112 PF00249.31 Myb_DNA-binding Domain 1 45 46 50.7 1.5e-13 1 CL0123
Cotton_A_04349_CDS 61 106 60 107 PF03107.16 C1_2 Domain 2 46 47 29.6 6.4e-07 1 CL0006
Cotton_A_28437_CDS 176 279 174 280 PF03763.13 Remorin_C Family 4 106 107 90.2 7.1e-26 1 No_clan
Cotton_A_23485_CDS 664 701 656 707 PF13432.6 TPR_16 Family 22 62 68 22.6 0.00012 1 CL0020
Cotton_A_29937_CDS 64 161 64 162 PF03195.14 LOB Family 1 98 99 134.7 1.3e-39 1 No_clan
Cotton_A_10545_CDS 88 156 88 157 PF00076.22 RRM_1 Domain 1 69 70 56.7 1.6e-15 1 CL0221
Cotton_A_10545_CDS 183 235 174 238 PF13865.6 FoP_duplication Family 6 64 81 32.8 7.8e-08 1 No_clan
Cotton_A_13221_CDS 10 102 8 105 PF03226.14 Yippee-Mis18 Domain 3 91 105 59.0 4.2e-16 1 CL0080
Cotton_A_06034_CDS 117 521 109 536 PF00067.22 p450 Domain 32 444 463 262.9 4.9e-78 1 No_clan
Cotton_A_05774_CDS 45 70 44 70 PF00642.24 zf-CCCH Family 2 27 27 32.4 6e-08 1 CL0537
Cotton_A_05774_CDS 104 124 104 124 PF00642.24 zf-CCCH Family 7 27 27 30.3 2.7e-07 1 CL0537
Cotton_A_05774_CDS 146 170 144 170 PF00642.24 zf-CCCH Family 3 27 27 37.7 1.3e-09 1 CL0537
Cotton_A_05774_CDS 303 328 302 328 PF00642.24 zf-CCCH Family 2 27 27 34.8 1e-08 1 CL0537
Cotton_A_05774_CDS 349 374 348 374 PF00642.24 zf-CCCH Family 2 27 27 41.2 1e-10 1 CL0537
Cotton_A_28860_CDS 90 474 90 474 PF00890.24 FAD_binding_2 Family 1 417 417 300.2 2.6e-89 1 CL0063
Cotton_A_28860_CDS 530 621 530 649 PF02910.20 Succ_DH_flav_C Domain 1 93 128 68.1 6.7e-19 1 No_clan
Cotton_A_07486_CDS 68 151 68 153 PF03101.15 FAR1 Domain 1 88 90 76.9 1.5e-21 1 CL0274
Cotton_A_07486_CDS 270 363 270 364 PF10551.9 MULE Domain 1 95 96 92.1 2.2e-26 1 CL0219
Cotton_A_07486_CDS 565 589 543 591 PF04434.17 SWIM Domain 10 36 40 20.9 0.00021 1 No_clan
Cotton_A_26426_CDS 16 143 16 143 PF02365.15 NAM Family 1 126 126 121.0 5.7e-35 1 No_clan
Cotton_A_33837_CDS 103 399 103 401 PF10250.9 O-FucT Family 1 313 336 210.9 3.9e-62 1 CL0113
Cotton_A_13799_CDS 114 192 114 192 PF11204.8 DUF2985 Family 1 78 78 97.9 2.8e-28 1 No_clan
Cotton_A_13799_CDS 327 457 327 458 PF04749.17 PLAC8 Family 1 98 99 72.7 3.8e-20 1 No_clan
Cotton_A_15558_CDS 128 366 128 371 PF00561.20 Abhydrolase_1 Domain 1 251 257 69.4 3.7e-19 1 CL0028
Cotton_A_01253_CDS 323 364 322 364 PF05182.13 Fip1 Motif 2 43 43 67.6 4.9e-19 1 No_clan
Cotton_A_12365_CDS 174 231 174 231 PF03106.15 WRKY Domain 1 59 59 91.0 3.9e-26 1 CL0274
Cotton_A_26826_CDS 99 564 95 565 PF00939.19 Na_sulph_symp Family 5 471 472 412.7 2.3e-123 1 CL0182
Cotton_A_03412_CDS 1 142 1 142 PF04601.13 DUF569 Domain 1 142 142 251.5 1.6e-75 1 CL0066
Cotton_A_25952_CDS 2 226 2 226 PF12481.8 DUF3700 Domain 1 228 228 309.6 1.1e-92 1 CL0052
Cotton_A_26386_CDS 40 636 35 639 PF01602.20 Adaptin_N Family 12 519 524 352.2 4.5e-105 1 CL0020
Cotton_A_26386_CDS 849 909 824 961 PF14796.6 AP3B1_C Family 54 114 148 33.1 5.7e-08 1 No_clan
Cotton_A_16140_CDS 118 403 118 408 PF00464.19 SHMT Domain 1 278 399 397.9 3.7e-119 1 CL0061
Cotton_A_22999_CDS 68 248 66 249 PF17047.5 SMP_LBD Domain 3 179 180 62.2 4.1e-17 1 CL0648
Cotton_A_22999_CDS 264 362 264 365 PF00168.30 C2 Domain 1 100 103 81.6 4.1e-23 1 CL0154
Cotton_A_08223_CDS 242 330 241 362 PF01926.23 MMR_HSR1 Family 2 84 114 56.5 2.6e-15 1 CL0023
Cotton_A_29361_CDS 6 67 4 70 PF02798.20 GST_N Domain 3 65 76 43.6 2.8e-11 1 CL0172
Cotton_A_29361_CDS 75 141 34 141 PF13410.6 GST_C_2 Domain 5 69 69 36.9 2.7e-09 1 CL0497
Cotton_A_33414_CDS 143 268 143 268 PF05542.11 DUF760 Family 1 84 84 82.5 2.1e-23 1 No_clan
Cotton_A_25502_CDS 29 56 27 59 PF00232.18 Glyco_hydro_1 Domain 3 30 453 21.3 7.6e-05 1 CL0058
Cotton_A_25502_CDS 57 445 56 446 PF00232.18 Glyco_hydro_1 Domain 88 452 453 361.5 4.8e-108 1 CL0058
Cotton_A_03977_CDS 1 98 1 99 PF00752.17 XPG_N Family 1 100 101 81.4 5.3e-23 1 CL0280
Cotton_A_03977_CDS 140 226 138 226 PF00867.18 XPG_I Family 3 94 94 79.2 2.2e-22 1 CL0464
Cotton_A_07614_CDS 2 43 2 43 PF18253.1 HipN Domain 1 42 42 67.8 4.8e-19 1 No_clan
Cotton_A_24909_CDS 9 77 9 79 PF06645.13 SPC12 Family 1 69 71 105.9 8.1e-31 1 No_clan
Cotton_A_02809_CDS 35 115 35 115 PF02298.17 Cu_bind_like Domain 1 84 84 88.3 2.5e-25 1 CL0026
Cotton_A_31354_CDS 26 73 26 73 PF00249.31 Myb_DNA-binding Domain 1 46 46 52.1 5.6e-14 1 CL0123
Cotton_A_31354_CDS 83 124 79 124 PF00249.31 Myb_DNA-binding Domain 5 46 46 48.3 8.5e-13 1 CL0123
Cotton_A_05794_CDS 112 206 96 206 PF10184.9 DUF2358 Family 18 113 113 28.7 1.2e-06 1 CL0051
Cotton_A_03682_CDS 2 40 1 45 PF12937.7 F-box-like Domain 2 41 48 27.0 2.9e-06 1 CL0271
Cotton_A_03682_CDS 231 340 220 386 PF07734.13 FBA_1 Family 12 124 164 26.9 3.8e-06 1 CL0162
Cotton_A_23936_CDS 304 337 303 337 PF13831.6 PHD_2 Family 2 36 36 43.0 2.4e-11 1 CL0390
Cotton_A_23936_CDS 348 449 347 461 PF13832.6 zf-HC5HC2H_2 Domain 2 95 110 53.1 3e-14 1 CL0390
Cotton_A_23936_CDS 1054 1087 1053 1087 PF13831.6 PHD_2 Family 2 36 36 42.6 3.2e-11 1 CL0390
Cotton_A_23936_CDS 1111 1224 1110 1224 PF13832.6 zf-HC5HC2H_2 Domain 2 110 110 61.6 6.9e-17 1 CL0390
Cotton_A_20796_CDS 15 269 14 274 PF02679.15 ComA Family 2 238 243 274.9 5.3e-82 1 CL0036
Cotton_A_33047_CDS 38 496 38 506 PF00067.22 p450 Domain 1 452 463 337.6 1.1e-100 1 No_clan
Cotton_A_01280_CDS 165 375 165 375 PF03181.15 BURP Family 1 215 215 285.4 2.6e-85 1 No_clan
Cotton_A_11870_CDS 17 67 17 68 PF00847.20 AP2 Domain 1 53 54 42.5 5.6e-11 1 CL0081
Cotton_A_08250_CDS 87 236 85 240 PF12483.8 GIDE Family 2 155 158 122.8 8.1e-36 1 No_clan
Cotton_A_08250_CDS 293 336 292 336 PF13920.6 zf-C3HC4_3 Domain 3 50 50 44.8 8.5e-12 1 CL0229
Cotton_A_25858_CDS 1 119 1 119 PF03547.18 Mem_trans Family 269 387 387 166.9 4.3e-49 1 CL0064
Cotton_A_07951_CDS 296 486 275 491 PF00201.18 UDPGT Family 269 420 499 73.5 1.5e-20 1 CL0113
Cotton_A_31766_CDS 111 163 110 165 PF00013.29 KH_1 Domain 2 55 66 48.3 6.6e-13 1 CL0007
Cotton_A_31766_CDS 203 270 202 271 PF00013.29 KH_1 Domain 2 65 66 58.8 3.5e-16 1 CL0007
Cotton_A_31766_CDS 384 447 384 448 PF00013.29 KH_1 Domain 1 65 66 44.7 8.4e-12 1 CL0007
Cotton_A_18956_CDS 14 197 12 197 PF04525.12 LOR Domain 3 187 187 165.8 8.1e-49 1 CL0395
Cotton_A_01136_CDS 369 432 367 432 PF00512.25 HisKA Domain 3 67 67 59.2 3e-16 1 CL0025
Cotton_A_01136_CDS 478 701 478 703 PF02518.26 HATPase_c Domain 1 110 112 76.2 2.7e-21 1 CL0025
Cotton_A_01136_CDS 900 967 900 972 PF00072.24 Response_reg Domain 1 69 112 48.0 1.2e-12 1 CL0304
Cotton_A_36448_CDS 14 85 10 86 PF14569.6 zf-UDP Domain 6 77 78 122.0 7.9e-36 1 CL0229
Cotton_A_36448_CDS 341 1062 341 1064 PF03552.14 Cellulose_synt Family 1 720 722 1372.0 0 1 CL0110
Cotton_A_16885_CDS 14 150 8 152 PF00892.20 EamA Family 8 135 137 38.3 1.4e-09 1 CL0184
Cotton_A_16885_CDS 204 315 189 316 PF00892.20 EamA Family 28 136 137 41.7 1.2e-10 1 CL0184
Cotton_A_29461_CDS 59 167 56 167 PF02341.15 RcbX Family 9 111 111 88.8 2.7e-25 1 No_clan
Cotton_A_17066_CDS 61 110 60 111 PF00847.20 AP2 Domain 2 53 54 52.5 4.2e-14 1 CL0081
Cotton_A_38509_CDS 374 588 349 589 PF07714.17 Pkinase_Tyr Domain 45 258 259 135.7 1.7e-39 1 CL0016
Cotton_A_11825_CDS 9 87 9 119 PF14226.6 DIOX_N Family 1 76 118 41.8 1.6e-10 1 CL0029
Cotton_A_11825_CDS 175 263 162 264 PF03171.20 2OG-FeII_Oxy Domain 11 100 101 49.9 3.5e-13 1 CL0029
Cotton_A_26462_CDS 47 148 47 149 PF13664.6 DUF4149 Domain 1 101 102 97.1 6.5e-28 1 CL0430
Cotton_A_06629_CDS 90 210 89 210 PF01926.23 MMR_HSR1 Family 2 114 114 65.9 3.2e-18 1 CL0023
Cotton_A_06629_CDS 294 417 293 417 PF01926.23 MMR_HSR1 Family 2 114 114 70.2 1.4e-19 1 CL0023
Cotton_A_06629_CDS 481 560 481 560 PF14714.6 KH_dom-like Domain 1 80 80 85.1 3e-24 1 No_clan
Cotton_A_22228_CDS 51 418 50 418 PF02535.22 Zip Family 2 333 333 251.5 1.2e-74 1 CL0184
Cotton_A_09491_CDS 29 340 28 341 PF00657.22 Lipase_GDSL Family 2 199 200 67.5 1.5e-18 1 CL0264
Cotton_A_17135_CDS 45 137 45 139 PF14368.6 LTP_2 Family 1 95 97 53.9 1.4e-14 1 CL0482
Cotton_A_39065_CDS 19 181 18 192 PF01595.20 DUF21 Domain 2 169 176 122.4 1.6e-35 1 No_clan
Cotton_A_27004_CDS 10 151 10 151 PF02792.14 Mago_nashi Family 1 142 142 265.9 8.2e-80 1 No_clan
Cotton_A_03415_CDS 6 78 4 78 PF02798.20 GST_N Domain 3 76 76 55.2 6.7e-15 1 CL0172
Cotton_A_03415_CDS 101 202 96 203 PF00043.25 GST_C Domain 10 92 93 24.1 3.2e-05 1 CL0497
Cotton_A_34285_CDS 90 369 90 371 PF07887.11 Calmodulin_bind Family 1 290 292 323.4 1.2e-96 1 No_clan
Cotton_A_04252_CDS 258 403 258 403 PF07526.11 POX Domain 1 136 136 87.6 1.1e-24 1 No_clan
Cotton_A_04252_CDS 475 514 475 514 PF05920.11 Homeobox_KN Family 1 40 40 64.5 5.7e-18 1 CL0123
Cotton_A_36727_CDS 8 94 7 96 PF06552.12 TOM20_plant Family 2 88 187 152.2 1.3e-44 1 CL0020
Cotton_A_14657_CDS 2 35 1 36 PF00394.22 Cu-oxidase Domain 63 96 159 37.2 3e-09 1 CL0026
Cotton_A_31751_CDS 34 144 33 146 PF07732.15 Cu-oxidase_3 Domain 2 117 119 123.4 4.8e-36 1 CL0026
Cotton_A_23871_CDS 421 459 420 460 PF00514.23 Arm Repeat 2 40 41 21.7 0.00014 1 CL0020
Cotton_A_23871_CDS 462 502 461 504 PF00514.23 Arm Repeat 2 39 41 26.0 6.5e-06 1 CL0020
Cotton_A_23871_CDS 562 595 556 596 PF00514.23 Arm Repeat 7 40 41 33.6 2.7e-08 1 CL0020
Cotton_A_23871_CDS 597 637 597 638 PF00514.23 Arm Repeat 1 38 41 25.7 7.9e-06 1 CL0020
Cotton_A_23871_CDS 644 680 641 681 PF00514.23 Arm Repeat 4 40 41 28.8 8.6e-07 1 CL0020
Cotton_A_33131_CDS 26 174 26 175 PF04759.13 DUF617 Family 1 162 163 122.5 1.7e-35 1 No_clan
Cotton_A_11675_CDS 147 272 146 273 PF07526.11 POX Domain 2 135 136 161.4 1.7e-47 1 No_clan
Cotton_A_36547_CDS 70 511 69 527 PF00067.22 p450 Domain 2 448 463 263.9 2.5e-78 1 No_clan
Cotton_A_17118_CDS 96 130 96 138 PF04640.14 PLATZ Family 1 35 82 40.6 2.9e-10 1 No_clan
Cotton_A_23467_CDS 53 103 52 106 PF07716.15 bZIP_2 Family 2 51 54 43.1 3.3e-11 1 CL0018
Cotton_A_33249_CDS 1 39 1 40 PF14363.6 AAA_assoc Family 56 95 96 27.8 2.4e-06 1 No_clan
Cotton_A_10073_CDS 15 423 15 424 PF00115.20 COX1 Family 1 387 432 441.4 3.2e-132 1 No_clan
Cotton_A_17458_CDS 25 89 25 102 PF16363.5 GDP_Man_Dehyd Domain 1 68 332 40.8 1.7e-10 1 CL0063
Cotton_A_22467_CDS 168 389 153 390 PF00931.22 NB-ARC Domain 18 251 252 165.7 1.1e-48 1 CL0023
Cotton_A_08663_CDS 197 293 194 300 PF03168.13 LEA_2 Domain 4 94 101 26.5 7.1e-06 1 CL0159
Cotton_A_11756_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 56.7 2.1e-15 1 CL0123
Cotton_A_00085_CDS 25 580 24 581 PF03321.13 GH3 Family 2 526 527 618.1 1.5e-185 1 CL0378
Cotton_A_11219_CDS 87 212 87 213 PF07977.13 FabA Domain 1 137 138 115.5 1.3e-33 1 CL0050
Cotton_A_23336_CDS 99 436 60 443 PF00201.18 UDPGT Family 81 413 499 88.6 4.1e-25 1 CL0113
Cotton_A_30534_CDS 68 130 68 130 PF00226.31 DnaJ Domain 1 63 63 50.2 2e-13 1 CL0392
Cotton_A_16649_CDS 152 314 146 315 PF01126.20 Heme_oxygenase Domain 37 204 205 44.9 1.1e-11 1 CL0230
Cotton_A_05650_CDS 162 350 159 351 PF16035.5 Chalcone_2 Domain 4 203 204 40.8 2e-10 1 CL0560
Cotton_A_05040_CDS 8 97 8 98 PF13850.6 ERGIC_N Domain 1 90 91 105.4 1.5e-30 1 No_clan
Cotton_A_05040_CDS 149 366 149 366 PF07970.12 COPIIcoated_ERV Family 1 221 221 284.4 7e-85 1 No_clan
Cotton_A_16631_CDS 215 269 199 270 PF12894.7 ANAPC4_WD40 Repeat 36 91 92 25.8 9.8e-06 1 CL0186
Cotton_A_16631_CDS 295 328 292 328 PF00400.32 WD40 Repeat 6 38 38 24.9 2.6e-05 1 CL0186
Cotton_A_16631_CDS 333 373 332 373 PF00400.32 WD40 Repeat 2 38 38 15.9 0.018 1 CL0186
Cotton_A_16631_CDS 422 458 420 458 PF00400.32 WD40 Repeat 3 38 38 23.8 5.5e-05 1 CL0186
Cotton_A_22152_CDS 32 196 32 196 PF03398.14 Ist1 Family 1 164 164 201.4 8.3e-60 1 No_clan
Cotton_A_08420_CDS 85 372 84 373 PF05212.12 DUF707 Family 2 295 296 456.4 3.8e-137 1 No_clan
Cotton_A_25991_CDS 115 183 113 183 PF00690.26 Cation_ATPase_N Domain 3 69 69 49.1 3.3e-13 1 No_clan
Cotton_A_25991_CDS 235 437 232 439 PF00122.20 E1-E2_ATPase Family 5 179 181 142.9 7.7e-42 1 No_clan
Cotton_A_25991_CDS 457 783 455 783 PF00702.26 Hydrolase Domain 3 210 210 59.1 7e-16 1 CL0137
Cotton_A_25991_CDS 854 1024 853 1024 PF00689.21 Cation_ATPase_C Family 2 182 182 157.3 3.2e-46 1 No_clan
Cotton_A_08553_CDS 1 132 1 132 PF00125.24 Histone Domain 1 131 131 181.1 1.1e-53 1 CL0012
Cotton_A_09110_CDS 4 61 4 63 PF00076.22 RRM_1 Domain 1 62 70 62.3 2.7e-17 1 CL0221
Cotton_A_09110_CDS 99 114 98 115 PF00098.23 zf-CCHC Domain 2 17 18 31.9 8.5e-08 1 CL0511
Cotton_A_12392_CDS 28 171 28 171 PF00810.18 ER_lumen_recept Family 1 147 147 183.0 5.7e-54 1 CL0141
Cotton_A_16761_CDS 13 76 12 77 PF17035.5 BET Domain 2 63 64 35.1 1.1e-08 1 CL0665
Cotton_A_01060_CDS 271 541 271 550 PF01513.21 NAD_kinase Family 1 281 292 205.1 1.3e-60 1 CL0240
Cotton_A_13834_CDS 100 143 99 143 PF13639.6 zf-RING_2 Domain 2 44 44 47.3 1.9e-12 1 CL0229
Cotton_A_34368_CDS 176 249 176 250 PF03110.14 SBP Domain 1 74 75 109.7 6.4e-32 1 No_clan
Cotton_A_40699_CDS 17 63 17 64 PF00249.31 Myb_DNA-binding Domain 1 45 46 51.5 8.4e-14 1 CL0123
Cotton_A_40699_CDS 70 115 70 115 PF00249.31 Myb_DNA-binding Domain 1 46 46 51.8 6.9e-14 1 CL0123
Cotton_A_36709_CDS 526 571 525 571 PF13639.6 zf-RING_2 Domain 2 44 44 37.9 1.7e-09 1 CL0229
Cotton_A_32347_CDS 118 276 117 276 PF14299.6 PP2 Family 2 146 146 124.3 3.9e-36 1 No_clan
Cotton_A_18827_CDS 95 377 95 378 PF12697.7 Abhydrolase_6 Domain 1 219 220 74.3 2.1e-20 1 CL0028
Cotton_A_19139_CDS 6 176 2 177 PF00025.21 Arf Domain 2 174 175 232.4 2.2e-69 1 CL0023
Cotton_A_11914_CDS 1 33 1 34 PF00832.20 Ribosomal_L39 Family 9 41 42 67.5 5.4e-19 1 No_clan
Cotton_A_03393_CDS 114 287 114 288 PF10602.9 RPN7 Family 1 173 174 173.6 3e-51 1 CL0020
Cotton_A_03393_CDS 324 425 323 427 PF01399.27 PCI Domain 2 103 105 62.7 3.7e-17 1 CL0123
Cotton_A_32372_CDS 17 76 17 76 PF00137.21 ATP-synt_C Family 1 60 60 52.1 6.2e-14 1 No_clan
Cotton_A_32372_CDS 97 155 96 155 PF00137.21 ATP-synt_C Family 2 60 60 72.2 3.2e-20 1 No_clan
Cotton_A_13584_CDS 32 285 31 288 PF00139.19 Lectin_legB Domain 2 246 249 212.8 5.6e-63 1 CL0004
Cotton_A_13584_CDS 362 628 361 631 PF00069.25 Pkinase Domain 2 259 264 172.8 8.8e-51 1 CL0016
Cotton_A_25443_CDS 33 467 32 467 PF01490.18 Aa_trans Family 2 409 409 389.8 1.2e-116 1 CL0062
Cotton_A_25443_CDS 513 604 512 623 PF02171.17 Piwi Family 2 91 302 61.2 9.3e-17 1 CL0219
Cotton_A_29621_CDS 53 110 52 112 PF07939.11 DUF1685 Family 2 58 60 80.0 7.8e-23 1 No_clan
Cotton_A_01071_CDS 92 188 90 189 PF00153.27 Mito_carr Family 4 96 97 76.8 9.2e-22 1 No_clan
Cotton_A_01071_CDS 195 289 194 292 PF00153.27 Mito_carr Family 2 93 97 81.6 2.9e-23 1 No_clan
Cotton_A_01071_CDS 297 382 295 387 PF00153.27 Mito_carr Family 4 92 97 59.8 1.8e-16 1 No_clan
Cotton_A_35451_CDS 138 352 129 353 PF00557.24 Peptidase_M24 Domain 13 208 209 164.4 2.8e-48 1 No_clan
Cotton_A_01150_CDS 51 296 50 296 PF00141.23 peroxidase Domain 2 229 229 249.6 3e-74 1 CL0617
Cotton_A_14430_CDS 14 88 13 88 PF00575.23 S1 Domain 2 75 75 51.9 7e-14 1 CL0021
Cotton_A_14430_CDS 126 256 126 256 PF07541.12 EIF_2_alpha Family 1 116 116 136.7 3.4e-40 1 No_clan
Cotton_A_14358_CDS 8 78 8 79 PF00173.28 Cyt-b5 Domain 1 73 74 83.1 1.2e-23 1 No_clan
Cotton_A_14358_CDS 135 405 134 407 PF00487.24 FA_desaturase Domain 2 252 254 120.8 8.7e-35 1 No_clan
Cotton_A_03189_CDS 115 402 115 404 PF08392.12 FAE1_CUT1_RppA Family 1 288 290 435.8 7.2e-131 1 CL0046
Cotton_A_03189_CDS 430 510 427 511 PF08541.10 ACP_syn_III_C Domain 12 89 90 50.4 1.9e-13 1 CL0046
Cotton_A_36844_CDS 14 46 13 47 PF02037.27 SAP Family 2 34 35 38.4 7.3e-10 1 CL0306
Cotton_A_26502_CDS 39 318 39 318 PF04674.12 Phi_1 Family 1 276 276 417.7 1.9e-125 1 No_clan
Cotton_A_03480_CDS 65 366 65 367 PF02383.18 Syja_N Family 1 319 320 286.5 2.7e-85 1 CL0031
Cotton_A_24565_CDS 105 143 87 153 PF01485.21 IBR Domain 13 54 62 26.4 5.8e-06 1 CL0229
Cotton_A_11889_CDS 44 140 44 158 PF14365.6 Neprosin_AP Family 1 97 118 120.7 4.6e-35 1 No_clan
Cotton_A_11889_CDS 189 268 189 278 PF03080.15 Neprosin Family 1 97 222 54.8 8.1e-15 1 No_clan
Cotton_A_11889_CDS 293 389 293 412 PF14365.6 Neprosin_AP Family 1 97 118 121.5 2.5e-35 1 No_clan
Cotton_A_11889_CDS 438 660 438 660 PF03080.15 Neprosin Family 1 222 222 252.0 4e-75 1 No_clan
Cotton_A_11889_CDS 684 780 684 798 PF14365.6 Neprosin_AP Family 1 97 118 121.1 3.5e-35 1 No_clan
Cotton_A_11889_CDS 829 1053 829 1053 PF03080.15 Neprosin Family 1 222 222 234.5 9.1e-70 1 No_clan
Cotton_A_21175_CDS 24 98 24 99 PF03810.19 IBN_N Family 1 73 74 74.3 5.4e-21 1 CL0020
Cotton_A_21590_CDS 103 129 101 130 PF14383.6 VARLMGL Domain 5 31 32 44.6 7.1e-12 1 No_clan
Cotton_A_21590_CDS 464 626 464 626 PF14309.6 DUF4378 Family 1 165 165 102.4 3.2e-29 1 No_clan
Cotton_A_11479_CDS 82 250 82 250 PF06925.11 MGDG_synth Family 1 169 169 209.0 4.9e-62 1 CL0113
Cotton_A_11479_CDS 309 405 276 443 PF04101.16 Glyco_tran_28_C Domain 31 130 167 34.5 1.8e-08 1 CL0113
Cotton_A_15784_CDS 75 139 61 154 PF00168.30 C2 Domain 25 90 103 23.6 4.7e-05 1 CL0154
Cotton_A_15784_CDS 187 243 181 245 PF13499.6 EF-hand_7 Domain 7 69 71 33.6 4.1e-08 1 CL0220
Cotton_A_15784_CDS 419 609 419 629 PF02666.15 PS_Dcarbxylase Family 1 186 200 193.8 2.3e-57 1 No_clan
Cotton_A_28057_CDS 1 59 1 59 PF04783.12 DUF630 Family 1 59 59 89.5 1.1e-25 1 No_clan
Cotton_A_28057_CDS 305 613 305 614 PF04782.12 DUF632 Family 1 309 310 330.1 1.4e-98 1 No_clan
Cotton_A_40431_CDS 1 50 1 54 PF03463.15 eRF1_1 Domain 1 50 129 46.4 3.6e-12 1 CL0267
Cotton_A_39899_CDS 48 434 32 455 PF13520.6 AA_permease_2 Family 18 408 425 108.7 3.1e-31 1 CL0062
Cotton_A_21599_CDS 1 60 1 60 PF08069.12 Ribosomal_S13_N Domain 1 60 60 110.0 4.3e-32 1 No_clan
Cotton_A_21599_CDS 74 134 70 140 PF00312.22 Ribosomal_S15 Domain 4 68 81 53.1 2.7e-14 1 CL0600
Cotton_A_01072_CDS 48 107 47 108 PF00403.26 HMA Domain 2 61 62 39.2 6.9e-10 1 No_clan
Cotton_A_01072_CDS 122 181 121 182 PF00403.26 HMA Domain 2 61 62 42.3 7.6e-11 1 No_clan
Cotton_A_01072_CDS 438 622 425 623 PF00122.20 E1-E2_ATPase Family 12 179 181 155.9 7.9e-46 1 No_clan
Cotton_A_01072_CDS 640 869 640 869 PF00702.26 Hydrolase Domain 1 210 210 144.9 3.9e-42 1 CL0137
Cotton_A_04986_CDS 127 207 112 207 PF01477.23 PLAT Domain 27 117 117 26.1 1e-05 1 CL0321
Cotton_A_04986_CDS 220 869 220 869 PF00305.19 Lipoxygenase Domain 1 674 674 942.8 1.1e-283 1 No_clan
Cotton_A_30418_CDS 27 98 27 98 PF07983.13 X8 Domain 1 76 76 77.0 1.4e-21 1 No_clan
Cotton_A_06263_CDS 59 132 59 133 PF03110.14 SBP Domain 1 74 75 114.8 1.6e-33 1 No_clan
Cotton_A_15304_CDS 78 105 77 107 PF01535.20 PPR Family 2 29 31 10.4 0.65 1 CL0020
Cotton_A_15304_CDS 152 172 152 173 PF01535.20 PPR Family 4 24 31 10.3 0.71 1 CL0020
Cotton_A_15304_CDS 185 231 184 233 PF13041.6 PPR_2 Repeat 2 48 50 39.9 3.6e-10 1 CL0020
Cotton_A_15304_CDS 260 283 255 284 PF12854.7 PPR_1 Repeat 10 33 34 27.9 1.3e-06 1 CL0020
Cotton_A_34463_CDS 88 115 88 117 PF01535.20 PPR Family 1 28 31 9.7 1 1 CL0020
Cotton_A_34463_CDS 190 220 190 220 PF01535.20 PPR Family 1 31 31 27.4 2.4e-06 1 CL0020
Cotton_A_34463_CDS 289 332 288 335 PF13041.6 PPR_2 Repeat 2 45 50 35.6 7.7e-09 1 CL0020
Cotton_A_26434_CDS 116 404 116 405 PF08392.12 FAE1_CUT1_RppA Family 1 289 290 480.0 2.5e-144 1 CL0046
Cotton_A_26434_CDS 421 502 418 503 PF08541.10 ACP_syn_III_C Domain 11 89 90 42.2 6.7e-11 1 CL0046
Cotton_A_34609_CDS 149 208 148 208 PF13855.6 LRR_8 Repeat 2 61 61 27.6 1.7e-06 1 CL0022
Cotton_A_34609_CDS 269 291 269 291 PF00560.33 LRR_1 Repeat 1 23 23 16.3 0.0096 1 CL0022
Cotton_A_34609_CDS 364 424 364 424 PF13855.6 LRR_8 Repeat 1 61 61 33.1 3.4e-08 1 CL0022
Cotton_A_34609_CDS 624 894 622 897 PF00069.25 Pkinase Domain 3 259 264 147.2 5.8e-43 1 CL0016
Cotton_A_35078_CDS 36 97 36 119 PF01221.18 Dynein_light Domain 1 64 86 80.9 6.3e-23 1 No_clan
Cotton_A_35078_CDS 92 170 84 171 PF00009.27 GTP_EFTU Domain 11 78 194 36.6 3.1e-09 1 CL0023
Cotton_A_13693_CDS 33 182 33 187 PF01554.18 MatE Family 1 156 161 83.4 1.3e-23 1 CL0222
Cotton_A_13693_CDS 220 351 219 352 PF01554.18 MatE Family 30 160 161 73.1 2e-20 1 CL0222
Cotton_A_03642_CDS 230 325 230 326 PF07109.11 Mg-por_mtran_C Family 1 96 97 119.9 4.5e-35 1 CL0063
Cotton_A_14912_CDS 86 278 64 278 PF03007.16 WES_acyltransf Domain 70 264 264 41.8 1.1e-10 1 CL0149
Cotton_A_14912_CDS 331 476 331 477 PF06974.13 DUF1298 Family 1 144 145 135.6 1.2e-39 1 No_clan
Cotton_A_06501_CDS 86 345 86 351 PF01193.24 RNA_pol_L Domain 1 42 69 41.3 7.4e-11 1 CL0509
Cotton_A_06501_CDS 116 264 116 264 PF01000.26 RNA_pol_A_bac Domain 1 112 112 93.1 1.3e-26 1 No_clan
Cotton_A_29473_CDS 43 166 43 167 PF13456.6 RVT_3 Domain 1 122 124 51.6 7.5e-14 1 CL0219
Cotton_A_02504_CDS 33 146 32 147 PF07732.15 Cu-oxidase_3 Domain 2 117 119 127.8 2e-37 1 CL0026
Cotton_A_02504_CDS 158 300 158 301 PF00394.22 Cu-oxidase Domain 1 158 159 127.2 6e-37 1 CL0026
Cotton_A_02504_CDS 402 521 380 523 PF07731.14 Cu-oxidase_2 Domain 23 135 137 77.5 7.9e-22 1 CL0026
Cotton_A_17091_CDS 110 435 108 437 PF00520.31 Ion_trans Family 3 243 245 105.9 1.9e-30 1 CL0030
Cotton_A_17091_CDS 529 618 526 623 PF00027.29 cNMP_binding Domain 4 83 89 34.1 2.1e-08 1 CL0029
Cotton_A_11759_CDS 53 119 52 119 PF13499.6 EF-hand_7 Domain 2 71 71 56.3 3.3e-15 1 CL0220
Cotton_A_24053_CDS 27 335 23 339 PF00294.24 PfkB Family 5 298 302 262.0 6.9e-78 1 CL0118
Cotton_A_40032_CDS 32 102 32 102 PF00076.22 RRM_1 Domain 1 70 70 66.4 1.5e-18 1 CL0221
Cotton_A_40032_CDS 120 188 120 189 PF00076.22 RRM_1 Domain 1 69 70 76.5 1e-21 1 CL0221
Cotton_A_40032_CDS 211 279 211 280 PF00076.22 RRM_1 Domain 1 69 70 80.7 4.9e-23 1 CL0221
Cotton_A_40032_CDS 314 382 314 383 PF00076.22 RRM_1 Domain 1 69 70 65.2 3.4e-18 1 CL0221
Cotton_A_40032_CDS 531 597 530 597 PF00658.18 PABP Family 2 68 68 92.9 1e-26 1 No_clan
Cotton_A_20411_CDS 155 197 152 198 PF13041.6 PPR_2 Repeat 5 47 50 41.9 8.3e-11 1 CL0020
Cotton_A_20411_CDS 221 268 221 270 PF13041.6 PPR_2 Repeat 1 48 50 40.4 2.5e-10 1 CL0020
Cotton_A_20411_CDS 295 322 294 323 PF01535.20 PPR Family 2 29 31 22.6 8.5e-05 1 CL0020
Cotton_A_20411_CDS 323 375 314 378 PF13812.6 PPR_3 Repeat 8 60 63 40.2 2.7e-10 1 CL0020
Cotton_A_20411_CDS 387 448 386 448 PF13812.6 PPR_3 Repeat 2 63 63 60.6 1.1e-16 1 CL0020
Cotton_A_20411_CDS 452 481 447 483 PF13812.6 PPR_3 Repeat 32 61 63 18.5 0.0015 1 CL0020
Cotton_A_20411_CDS 504 549 503 552 PF13041.6 PPR_2 Repeat 2 47 50 46.2 3.8e-12 1 CL0020
Cotton_A_20411_CDS 577 606 576 606 PF01535.20 PPR Family 2 31 31 28.9 7.8e-07 1 CL0020
Cotton_A_20411_CDS 608 656 608 657 PF13041.6 PPR_2 Repeat 1 49 50 42.4 5.7e-11 1 CL0020
Cotton_A_20411_CDS 719 746 717 746 PF01535.20 PPR Family 4 31 31 11.6 0.26 1 CL0020
Cotton_A_04476_CDS 1 61 1 63 PF17781.1 RPN1_RPN2_N Domain 24 84 309 61.1 1.2e-16 1 No_clan
Cotton_A_04476_CDS 61 123 57 124 PF17781.1 RPN1_RPN2_N Domain 130 192 309 62.2 5.4e-17 1 No_clan
Cotton_A_04476_CDS 487 537 487 538 PF18051.1 RPN1_C Domain 1 51 54 74.4 5.1e-21 1 No_clan
Cotton_A_40284_CDS 1 18 1 25 PF02533.15 PsbK Family 20 37 41 37.4 2.1e-09 1 No_clan
Cotton_A_02048_CDS 96 196 94 196 PF02844.15 GARS_N Domain 3 90 90 102.6 1.5e-29 1 CL0483
Cotton_A_02048_CDS 197 391 197 391 PF01071.19 GARS_A Domain 1 194 194 277.8 4.5e-83 1 CL0179
Cotton_A_02048_CDS 426 519 426 519 PF02843.16 GARS_C Domain 1 80 80 101.2 2.8e-29 1 CL0105
Cotton_A_12871_CDS 67 531 67 532 PF01593.24 Amino_oxidase Domain 1 451 452 228.2 2.3e-67 1 CL0063
Cotton_A_14626_CDS 55 204 55 209 PF04072.14 LCM Family 1 171 188 72.6 4e-20 1 CL0063
Cotton_A_25367_CDS 8 73 2 75 PF00240.23 ubiquitin Domain 6 70 72 29.5 4.5e-07 1 CL0072
Cotton_A_25367_CDS 105 476 104 476 PF00443.29 UCH Family 2 257 257 171.1 3e-50 1 CL0125
Cotton_A_28684_CDS 38 125 2 133 PF01459.22 Porin_3 Family 179 264 270 66.4 2.8e-18 1 CL0193
Cotton_A_21860_CDS 138 245 132 247 PF00067.22 p450 Domain 200 305 463 46.1 2.8e-12 1 No_clan
Cotton_A_21860_CDS 244 372 243 381 PF00067.22 p450 Domain 325 455 463 97.1 9.5e-28 1 No_clan
Cotton_A_01382_CDS 60 510 60 518 PF00067.22 p450 Domain 1 455 463 326.0 3.7e-97 1 No_clan
Cotton_A_18574_CDS 53 140 53 140 PF03330.18 DPBB_1 Domain 1 83 83 76.1 1.9e-21 1 CL0199
Cotton_A_18574_CDS 151 228 151 228 PF01357.21 Pollen_allerg_1 Domain 1 80 80 91.0 3.5e-26 1 CL0159
Cotton_A_32638_CDS 334 443 311 450 PF01544.18 CorA Family 180 288 292 32.7 4.8e-08 1 No_clan
Cotton_A_30541_CDS 100 236 100 236 PF04116.13 FA_hydroxylase Family 1 133 133 84.1 1.1e-23 1 No_clan
Cotton_A_06721_CDS 6 317 6 318 PF00657.22 Lipase_GDSL Family 1 199 200 62.7 4.4e-17 1 CL0264
Cotton_A_24842_CDS 43 373 43 374 PF05055.12 DUF677 Family 1 335 336 430.9 2.6e-129 1 CL0133
Cotton_A_06965_CDS 277 646 275 646 PF03514.14 GRAS Family 3 374 374 385.7 2.1e-115 1 CL0063
Cotton_A_26639_CDS 43 104 41 109 PF09328.10 Phytochelatin_C Family 10 71 261 86.3 2.1e-24 1 No_clan
Cotton_A_26639_CDS 130 197 127 242 PF07714.17 Pkinase_Tyr Domain 139 205 259 31.4 1.1e-07 1 CL0016
Cotton_A_26728_CDS 24 71 24 71 PF00249.31 Myb_DNA-binding Domain 1 46 46 58.4 5.9e-16 1 CL0123
Cotton_A_26728_CDS 77 120 77 122 PF00249.31 Myb_DNA-binding Domain 1 44 46 54.0 1.4e-14 1 CL0123
Cotton_A_02847_CDS 411 444 410 444 PF00806.19 PUF Repeat 2 35 35 34.3 1e-08 1 CL0020
Cotton_A_02847_CDS 454 481 449 483 PF00806.19 PUF Repeat 6 33 35 24.5 1.4e-05 1 CL0020
Cotton_A_02847_CDS 487 520 486 520 PF00806.19 PUF Repeat 2 35 35 28.6 6.9e-07 1 CL0020
Cotton_A_02847_CDS 525 552 523 557 PF00806.19 PUF Repeat 4 30 35 25.0 1e-05 1 CL0020
Cotton_A_02847_CDS 566 581 564 586 PF00806.19 PUF Repeat 9 24 35 19.9 0.00039 1 CL0020
Cotton_A_02847_CDS 593 620 592 626 PF00806.19 PUF Repeat 2 29 35 19.5 0.00055 1 CL0020
Cotton_A_09305_CDS 176 220 173 221 PF00010.26 HLH Domain 5 52 53 32.8 4.9e-08 1 No_clan
Cotton_A_23476_CDS 25 440 25 440 PF00450.22 Peptidase_S10 Domain 1 419 419 376.2 2.9e-112 1 CL0028
Cotton_A_05244_CDS 62 146 62 146 PF14438.6 SM-ATX Domain 1 81 81 91.7 2.3e-26 1 CL0527
Cotton_A_05244_CDS 222 292 222 292 PF06741.13 LsmAD Domain 1 71 71 89.6 1.4e-25 1 No_clan
Cotton_A_01578_CDS 366 467 366 469 PF03126.18 Plus-3 Domain 1 107 109 79.4 2.5e-22 1 No_clan
Cotton_A_08965_CDS 21 186 21 189 PF00857.20 Isochorismatase Family 1 172 175 145.0 2.5e-42 1 No_clan
Cotton_A_18616_CDS 124 193 124 194 PF00076.22 RRM_1 Domain 1 69 70 71.2 4.8e-20 1 CL0221
Cotton_A_18616_CDS 218 288 218 288 PF00076.22 RRM_1 Domain 1 70 70 77.8 4e-22 1 CL0221
Cotton_A_08827_CDS 44 66 44 66 PF02493.20 MORN Repeat 1 23 23 27.5 1.8e-06 1 CL0251
Cotton_A_08827_CDS 67 88 67 89 PF02493.20 MORN Repeat 1 22 23 17.6 0.0025 1 CL0251
Cotton_A_08827_CDS 90 111 90 112 PF02493.20 MORN Repeat 1 22 23 7.7 3.6 1 CL0251
Cotton_A_08827_CDS 113 134 113 135 PF02493.20 MORN Repeat 1 22 23 22.5 6.8e-05 1 CL0251
Cotton_A_08827_CDS 136 157 136 158 PF02493.20 MORN Repeat 1 22 23 20.6 0.00029 1 CL0251
Cotton_A_08827_CDS 159 180 159 181 PF02493.20 MORN Repeat 1 22 23 27.4 1.9e-06 1 CL0251
Cotton_A_08827_CDS 182 203 182 204 PF02493.20 MORN Repeat 1 22 23 27.5 1.8e-06 1 CL0251
Cotton_A_14983_CDS 50 281 45 282 PF02784.16 Orn_Arg_deC_N Domain 6 246 247 211.5 1.2e-62 1 CL0036
Cotton_A_14983_CDS 69 377 19 377 PF00278.22 Orn_DAP_Arg_deC Domain 5 98 98 50.7 1.6e-13 1 No_clan
Cotton_A_21363_CDS 451 700 451 704 PF00225.23 Kinesin Domain 1 248 333 244.4 1.5e-72 1 CL0023
Cotton_A_34402_CDS 48 97 48 97 PF00847.20 AP2 Domain 1 53 54 37.7 1.7e-09 1 CL0081
Cotton_A_23554_CDS 47 84 45 85 PF18511.1 F-box_5 Domain 3 41 42 38.2 7.6e-10 1 CL0271
Cotton_A_23554_CDS 134 157 133 157 PF13516.6 LRR_6 Repeat 2 24 24 17.7 0.0025 1 CL0022
Cotton_A_01689_CDS 22 119 22 119 PF04749.17 PLAC8 Family 1 99 99 94.2 7.9e-27 1 No_clan
Cotton_A_04244_CDS 70 186 70 186 PF00004.29 AAA Domain 1 132 132 110.2 9.3e-32 1 CL0023
Cotton_A_04244_CDS 208 249 208 274 PF17862.1 AAA_lid_3 Domain 1 41 45 45.5 4.9e-12 1 CL0671
Cotton_A_04244_CDS 266 296 254 298 PF09336.10 Vps4_C Domain 28 58 61 22.9 6.2e-05 1 CL0671
Cotton_A_35396_CDS 107 516 107 516 PF03140.15 DUF247 Family 1 397 397 414.8 4.1e-124 1 No_clan
Cotton_A_27307_CDS 17 130 16 131 PF07732.15 Cu-oxidase_3 Domain 2 117 119 128.1 1.6e-37 1 CL0026
Cotton_A_27307_CDS 142 284 142 285 PF00394.22 Cu-oxidase Domain 1 158 159 127.3 5.8e-37 1 CL0026
Cotton_A_27307_CDS 380 504 364 507 PF07731.14 Cu-oxidase_2 Domain 17 134 137 82.9 1.7e-23 1 CL0026
Cotton_A_24754_CDS 10 66 2 75 PF01055.26 Glyco_hydro_31 Family 201 256 440 45.1 8e-12 1 CL0058
Cotton_A_17238_CDS 12 68 10 69 PF13855.6 LRR_8 Repeat 1 59 61 31.7 9.3e-08 1 CL0022
Cotton_A_04143_CDS 59 166 59 166 PF00101.20 RuBisCO_small Domain 1 97 97 138.3 6.3e-41 1 No_clan
Cotton_A_21745_CDS 1 60 1 60 PF04783.12 DUF630 Family 1 59 59 79.2 1.9e-22 1 No_clan
Cotton_A_21745_CDS 277 600 277 601 PF04782.12 DUF632 Family 1 309 310 365.4 2.5e-109 1 No_clan
Cotton_A_33683_CDS 32 81 32 81 PF08100.11 Dimerisation Domain 1 51 51 70.5 8.4e-20 1 CL0123
Cotton_A_33683_CDS 133 347 133 347 PF00891.18 Methyltransf_2 Domain 1 210 210 195.3 7.2e-58 1 CL0063
Cotton_A_15865_CDS 5 101 5 105 PF02362.21 B3 Family 1 97 101 46.9 1.9e-12 1 CL0405
Cotton_A_16171_CDS 7 321 5 321 PF07992.14 Pyr_redox_2 Domain 3 294 294 187.5 3.1e-55 1 CL0063
Cotton_A_13002_CDS 76 225 75 225 PF00588.19 SpoU_methylase Family 2 142 142 100.8 7.2e-29 1 CL0098
Cotton_A_31951_CDS 47 132 18 132 PF00583.25 Acetyltransf_1 Family 33 117 117 56.0 4.2e-15 1 CL0257
Cotton_A_13334_CDS 80 483 80 483 PF00450.22 Peptidase_S10 Domain 1 419 419 455.6 2.2e-136 1 CL0028
Cotton_A_23126_CDS 298 355 297 355 PF13855.6 LRR_8 Repeat 2 61 61 33.3 3e-08 1 CL0022
Cotton_A_23126_CDS 462 482 461 482 PF00560.33 LRR_1 Repeat 2 23 23 10.5 0.79 1 CL0022
Cotton_A_35301_CDS 1 128 1 128 PF01092.19 Ribosomal_S6e Family 1 125 125 182.3 3e-54 1 No_clan
Cotton_A_00513_CDS 94 328 93 328 PF13641.6 Glyco_tranf_2_3 Domain 3 230 230 75.2 6.8e-21 1 CL0110
Cotton_A_30000_CDS 126 183 119 186 PF03460.17 NIR_SIR_ferr Repeat 8 66 69 55.5 3.8e-15 1 No_clan
Cotton_A_30000_CDS 220 313 218 413 PF01077.22 NIR_SIR Family 3 79 159 61.0 9.1e-17 1 No_clan
Cotton_A_04371_CDS 84 243 82 245 PF02383.18 Syja_N Family 2 194 320 67.2 1.5e-18 1 CL0031
Cotton_A_28235_CDS 16 92 16 92 PF06093.13 Spt4 Domain 1 77 77 110.7 2.7e-32 1 CL0167
Cotton_A_28093_CDS 110 161 88 178 PF07731.14 Cu-oxidase_2 Domain 23 73 137 28.9 7.8e-07 1 CL0026
Cotton_A_27104_CDS 80 182 79 182 PF08241.12 Methyltransf_11 Domain 2 96 96 53.0 4.1e-14 1 CL0063
Cotton_A_27104_CDS 555 712 516 718 PF01564.17 Spermine_synth Domain 33 159 188 30.2 2.6e-07 1 CL0063
Cotton_A_01510_CDS 1 146 1 146 PF03087.14 DUF241 Family 91 234 234 118.7 3.5e-34 1 CL0133
Cotton_A_19927_CDS 59 185 35 212 PF02902.19 Peptidase_C48 Domain 66 190 216 60.6 1.8e-16 1 CL0125
Cotton_A_35025_CDS 70 122 69 122 PF14416.6 PMR5N Domain 2 53 53 77.8 5.6e-22 1 No_clan
Cotton_A_35025_CDS 123 397 123 398 PF13839.6 PC-Esterase Family 1 282 283 301.7 6.4e-90 1 CL0264
Cotton_A_29801_CDS 221 266 218 266 PF00010.26 HLH Domain 5 53 53 47.7 1.1e-12 1 No_clan
Cotton_A_30351_CDS 149 319 149 320 PF02582.14 DUF155 Family 1 175 176 96.8 1.5e-27 1 No_clan
Cotton_A_37480_CDS 38 179 28 180 PF12819.7 Malectin_like Domain 198 335 336 72.3 4e-20 1 CL0202
Cotton_A_37480_CDS 279 547 278 549 PF00069.25 Pkinase Domain 2 260 264 151.1 3.5e-44 1 CL0016
Cotton_A_18183_CDS 69 156 69 156 PF03330.18 DPBB_1 Domain 1 83 83 77.5 7.3e-22 1 CL0199
Cotton_A_18183_CDS 167 244 167 244 PF01357.21 Pollen_allerg_1 Domain 1 80 80 93.8 4.9e-27 1 CL0159
Cotton_A_13122_CDS 6 30 6 30 PF06943.12 zf-LSD1 Domain 1 25 25 48.7 4.8e-13 1 No_clan
Cotton_A_13122_CDS 44 68 44 68 PF06943.12 zf-LSD1 Domain 1 25 25 49.1 3.7e-13 1 No_clan
Cotton_A_31925_CDS 176 234 176 234 PF03909.17 BSD Domain 1 57 58 49.0 4.3e-13 1 No_clan
Cotton_A_02929_CDS 79 204 79 207 PF07967.13 zf-C3HC Domain 1 130 133 116.6 7.7e-34 1 CL0417
Cotton_A_24032_CDS 47 169 47 174 PF03188.16 Cytochrom_B561 Family 1 130 137 34.4 2.1e-08 1 CL0328
Cotton_A_18443_CDS 117 286 115 289 PF01694.22 Rhomboid Family 3 147 150 87.6 7.9e-25 1 CL0207
Cotton_A_17046_CDS 18 126 6 127 PF03004.14 Transposase_24 Family 26 141 142 61.0 1.3e-16 1 No_clan
Cotton_A_16951_CDS 14 175 14 177 PF00071.22 Ras Domain 1 160 162 38.5 8.4e-10 1 CL0023
Cotton_A_16951_CDS 229 313 228 314 PF08356.12 EF_assoc_2 Family 2 86 87 102.1 1.2e-29 1 CL0220
Cotton_A_16951_CDS 350 418 350 418 PF08355.12 EF_assoc_1 Family 1 75 75 63.7 8.8e-18 1 No_clan
Cotton_A_27626_CDS 5 158 4 158 PF00582.26 Usp Domain 3 141 141 104.4 6.9e-30 1 CL0039
Cotton_A_30664_CDS 14 237 7 242 PF01704.18 UDPGP Family 16 254 413 223.9 2.7e-66 1 CL0110
Cotton_A_04931_CDS 1 37 1 38 PF02179.16 BAG Family 37 74 75 27.6 2.9e-06 1 No_clan
Cotton_A_20195_CDS 78 252 78 254 PF06026.14 Rib_5-P_isom_A Family 1 171 173 213.8 1.3e-63 1 CL0246
Cotton_A_39441_CDS 125 206 113 208 PF00153.27 Mito_carr Family 11 95 97 67.3 8.3e-19 1 No_clan
Cotton_A_39441_CDS 217 295 213 297 PF00153.27 Mito_carr Family 10 95 97 39.6 3.7e-10 1 No_clan
Cotton_A_39441_CDS 302 393 300 397 PF00153.27 Mito_carr Family 3 92 97 66.1 2e-18 1 No_clan
Cotton_A_05792_CDS 163 359 65 364 PF00481.21 PP2C Family 59 251 258 136.4 1.3e-39 1 CL0238
Cotton_A_20364_CDS 66 155 40 162 PF00481.21 PP2C Family 39 132 258 48.2 1.1e-12 1 CL0238
Cotton_A_24216_CDS 46 421 46 421 PF00282.19 Pyridoxal_deC Domain 1 375 375 369.3 1.7e-110 1 CL0061
Cotton_A_18957_CDS 47 98 45 102 PF00227.26 Proteasome Domain 4 58 190 43.2 2.9e-11 1 CL0052
Cotton_A_19158_CDS 65 189 65 189 PF01113.20 DapB_N Domain 1 124 124 64.1 1.3e-17 1 CL0063
Cotton_A_19158_CDS 193 333 192 333 PF05173.14 DapB_C Domain 2 121 121 72.2 3.7e-20 1 CL0139
Cotton_A_04529_CDS 38 304 38 305 PF07651.16 ANTH Domain 1 275 277 192.6 6.5e-57 1 CL0009
Cotton_A_23406_CDS 1 177 1 177 PF00230.20 MIP Family 57 227 227 228.4 8.7e-68 1 No_clan
Cotton_A_01139_CDS 368 431 366 431 PF00512.25 HisKA Domain 3 67 67 58.7 4.4e-16 1 CL0025
Cotton_A_01139_CDS 477 700 477 702 PF02518.26 HATPase_c Domain 1 110 112 75.4 4.8e-21 1 CL0025
Cotton_A_01139_CDS 894 961 894 965 PF00072.24 Response_reg Domain 1 69 112 52.3 5.4e-14 1 CL0304
Cotton_A_28748_CDS 5 141 5 142 PF00179.26 UQ_con Domain 1 139 140 181.9 4.4e-54 1 CL0208
Cotton_A_20627_CDS 16 277 16 277 PF00069.25 Pkinase Domain 1 264 264 201.0 2.2e-59 1 CL0016
Cotton_A_16639_CDS 23 58 22 65 PF00646.33 F-box Domain 2 37 48 26.9 3.1e-06 1 CL0271
Cotton_A_16639_CDS 366 400 362 400 PF08387.10 FBD Family 12 46 46 32.4 6.3e-08 1 No_clan
Cotton_A_35590_CDS 98 167 98 167 PF01287.20 eIF-5a Domain 1 69 69 103.1 6.2e-30 1 CL0021
Cotton_A_15438_CDS 16 175 10 176 PF01956.16 EMC3_TMCO1 Family 18 169 170 110.6 6.6e-32 1 CL0376
Cotton_A_06366_CDS 36 247 35 247 PF01596.17 Methyltransf_3 Domain 2 212 212 341.3 1.5e-102 1 CL0063
Cotton_A_04700_CDS 221 389 220 389 PF00849.22 PseudoU_synth_2 Family 2 160 160 83.9 1.3e-23 1 CL0649
Cotton_A_21960_CDS 33 96 31 104 PF00717.23 Peptidase_S24 Domain 4 61 70 34.4 1.5e-08 1 CL0299
Cotton_A_36442_CDS 611 753 610 755 PF00637.20 Clathrin Family 2 140 143 73.1 2e-20 1 CL0020
Cotton_A_01474_CDS 66 167 62 168 PF14365.6 Neprosin_AP Family 5 117 118 119.0 1.5e-34 1 No_clan
Cotton_A_01474_CDS 181 408 181 408 PF03080.15 Neprosin Family 1 222 222 268.7 3e-80 1 No_clan
Cotton_A_40071_CDS 145 246 130 269 PF08045.11 CDC14 Family 105 207 284 52.6 3.4e-14 1 No_clan
Cotton_A_01548_CDS 4 26 4 26 PF10584.9 Proteasome_A_N Domain 1 23 23 51.2 6.8e-14 1 CL0052
Cotton_A_01548_CDS 27 210 27 210 PF00227.26 Proteasome Domain 1 190 190 198.1 9.1e-59 1 CL0052
Cotton_A_14758_CDS 53 100 47 103 PF00571.28 CBS Domain 7 54 57 31.2 2.3e-07 1 No_clan
Cotton_A_14758_CDS 113 158 113 173 PF00571.28 CBS Domain 1 47 57 28.6 1.5e-06 1 No_clan
Cotton_A_14758_CDS 217 264 211 267 PF00571.28 CBS Domain 6 54 57 24.6 2.6e-05 1 No_clan
Cotton_A_14758_CDS 277 327 277 332 PF00571.28 CBS Domain 1 51 57 28.1 2.1e-06 1 No_clan
Cotton_A_14758_CDS 399 480 398 482 PF00564.24 PB1 Domain 2 82 84 53.4 1.9e-14 1 CL0072
Cotton_A_21610_CDS 18 359 18 359 PF00225.23 Kinesin Domain 1 333 333 393.7 5.6e-118 1 CL0023
Cotton_A_00414_CDS 92 111 86 113 PF14383.6 VARLMGL Domain 10 29 32 23.4 3e-05 1 No_clan
Cotton_A_00414_CDS 171 215 171 215 PF12552.8 DUF3741 Family 1 45 45 63.7 1.1e-17 1 No_clan
Cotton_A_00414_CDS 751 894 749 894 PF14309.6 DUF4378 Family 3 165 165 106.7 1.6e-30 1 No_clan
Cotton_A_02074_CDS 13 131 13 131 PF01641.18 SelR Family 1 121 121 163.6 1.8e-48 1 CL0080
Cotton_A_40106_CDS 54 117 52 118 PF13499.6 EF-hand_7 Domain 1 70 71 49.6 4.1e-13 1 CL0220
Cotton_A_40106_CDS 139 185 138 188 PF13833.6 EF-hand_8 Domain 2 50 55 33.9 2.1e-08 1 CL0220
Cotton_A_10865_CDS 10 54 8 56 PF00646.33 F-box Domain 3 46 48 17.5 0.0028 1 CL0271
Cotton_A_01835_CDS 6 37 6 37 PF14369.6 zinc_ribbon_9 Domain 1 35 35 35.0 1.2e-08 1 CL0167
Cotton_A_01835_CDS 185 227 184 227 PF13639.6 zf-RING_2 Domain 2 44 44 43.4 3.1e-11 1 CL0229
Cotton_A_02327_CDS 111 260 33 262 PF10248.9 Mlf1IP Family 35 170 172 68.9 5.2e-19 1 No_clan
Cotton_A_13213_CDS 368 496 365 503 PF00566.18 RabGAP-TBC Family 72 204 215 114.6 5.1e-33 1 No_clan
Cotton_A_06533_CDS 74 154 73 155 PF07885.16 Ion_trans_2 Family 2 78 79 63.3 1.5e-17 1 CL0030
Cotton_A_06533_CDS 195 267 194 269 PF07885.16 Ion_trans_2 Family 2 77 79 56.9 1.5e-15 1 CL0030
Cotton_A_16432_CDS 158 328 158 328 PF00270.29 DEAD Domain 1 176 176 156.8 4.4e-46 1 CL0023
Cotton_A_16432_CDS 371 474 365 474 PF00271.31 Helicase_C Family 7 111 111 101.6 2.9e-29 1 CL0023
Cotton_A_08105_CDS 592 892 591 899 PF08314.11 Sec39 Family 4 312 750 54.2 8.9e-15 1 No_clan
Cotton_A_08105_CDS 938 1219 897 1225 PF08314.11 Sec39 Family 400 735 750 58.5 4.4e-16 1 No_clan
Cotton_A_31303_CDS 32 212 30 212 PF00722.21 Glyco_hydro_16 Domain 3 177 177 202.8 2.8e-60 1 CL0004
Cotton_A_31303_CDS 238 285 237 285 PF06955.12 XET_C Family 2 47 47 65.5 2.8e-18 1 CL0004
Cotton_A_28306_CDS 118 261 116 262 PF01694.22 Rhomboid Family 3 149 150 137.6 3.1e-40 1 CL0207
Cotton_A_24506_CDS 86 238 83 239 PF05142.12 DUF702 Family 4 149 150 181.9 9.5e-54 1 No_clan
Cotton_A_02434_CDS 59 521 59 543 PF00082.22 Peptidase_S8 Domain 1 284 298 259.6 3.5e-77 1 No_clan
Cotton_A_02434_CDS 821 1005 820 1008 PF12580.8 TPPII Family 2 187 190 206.0 3.6e-61 1 No_clan
Cotton_A_09768_CDS 104 254 104 260 PF01583.20 APS_kinase Domain 1 152 158 236.3 1.4e-70 1 CL0023
Cotton_A_26549_CDS 30 139 30 139 PF13947.6 GUB_WAK_bind Domain 1 106 106 100.3 9.4e-29 1 No_clan
Cotton_A_07775_CDS 8 553 7 553 PF05600.12 DUF773 Family 2 508 508 580.5 3.1e-174 1 No_clan
Cotton_A_29898_CDS 1 257 1 267 PF00464.19 SHMT Domain 114 378 399 418.8 1.6e-125 1 CL0061
Cotton_A_26568_CDS 43 226 40 226 PF02309.16 AUX_IAA Family 49 237 237 270.5 1.5e-80 1 CL0072
Cotton_A_25387_CDS 179 326 178 327 PF00270.29 DEAD Domain 26 175 176 128.2 2.7e-37 1 CL0023
Cotton_A_25387_CDS 366 475 363 475 PF00271.31 Helicase_C Family 4 111 111 103.8 6.1e-30 1 CL0023
Cotton_A_25677_CDS 168 207 168 212 PF02213.16 GYF Domain 1 40 45 46.6 2e-12 1 CL0673
Cotton_A_40034_CDS 66 110 66 110 PF12023.8 DUF3511 Family 1 45 45 89.0 1.3e-25 1 No_clan
Cotton_A_36624_CDS 36 318 20 319 PF02541.16 Ppx-GppA Family 17 284 285 166.2 1.1e-48 1 CL0108
Cotton_A_36624_CDS 354 445 351 478 PF01966.22 HD Family 8 93 122 22.7 8.7e-05 1 CL0237
Cotton_A_23055_CDS 6 203 5 204 PF08442.10 ATP-grasp_2 Domain 2 201 202 62.1 5e-17 1 CL0179
Cotton_A_23055_CDS 241 417 241 418 PF16114.5 Citrate_bind Domain 1 177 178 271.6 2.1e-81 1 CL0506
Cotton_A_15599_CDS 66 170 66 173 PF01283.19 Ribosomal_S26e Family 1 105 108 178.0 5.5e-53 1 No_clan
Cotton_A_17237_CDS 12 71 12 71 PF13855.6 LRR_8 Repeat 1 60 61 29.3 5.4e-07 1 CL0022
Cotton_A_34289_CDS 166 213 164 213 PF00010.26 HLH Domain 4 53 53 22.9 6.1e-05 1 No_clan
Cotton_A_17566_CDS 5 62 5 62 PF08246.12 Inhibitor_I29 Domain 1 58 58 67.2 1.2e-18 1 No_clan
Cotton_A_17566_CDS 89 155 89 159 PF00112.23 Peptidase_C1 Domain 1 68 218 90.0 2.3e-25 1 CL0125
Cotton_A_17566_CDS 157 269 154 269 PF00112.23 Peptidase_C1 Domain 106 218 218 118.8 3.4e-34 1 CL0125
Cotton_A_36870_CDS 459 612 458 612 PF02182.17 SAD_SRA Domain 2 157 157 161.3 1.4e-47 1 CL0178
Cotton_A_36870_CDS 635 730 634 730 PF05033.16 Pre-SET Family 2 109 109 60.5 2.1e-16 1 No_clan
Cotton_A_36870_CDS 749 880 749 880 PF00856.28 SET Family 1 169 169 78.0 1e-21 1 No_clan
Cotton_A_25143_CDS 165 306 163 307 PF01694.22 Rhomboid Family 3 149 150 133.3 6.8e-39 1 CL0207
Cotton_A_22120_CDS 478 663 466 675 PF00503.20 G-alpha Domain 17 185 354 81.2 7.9e-23 1 CL0023
Cotton_A_22120_CDS 675 822 668 823 PF00503.20 G-alpha Domain 217 353 354 87.7 8.1e-25 1 CL0023
Cotton_A_22342_CDS 6 74 1 74 PF13837.6 Myb_DNA-bind_4 Domain 21 90 90 57.1 1.8e-15 1 CL0123
Cotton_A_30256_CDS 18 146 18 150 PF04857.20 CAF1 Family 1 125 319 40.8 1.5e-10 1 CL0219
Cotton_A_15546_CDS 36 342 36 344 PF00657.22 Lipase_GDSL Family 1 198 200 73.6 2.1e-20 1 CL0264
Cotton_A_06410_CDS 198 403 63 406 PF01544.18 CorA Family 99 288 292 100.0 1.5e-28 1 No_clan
Cotton_A_05872_CDS 27 112 20 131 PF00651.31 BTB Domain 10 97 111 23.5 5e-05 1 CL0033
Cotton_A_05872_CDS 201 447 201 448 PF03000.14 NPH3 Family 1 257 258 293.8 1.2e-87 1 No_clan
Cotton_A_32786_CDS 28 138 27 138 PF08240.12 ADH_N Domain 2 109 109 80.3 8.4e-23 1 CL0296
Cotton_A_32786_CDS 170 281 170 289 PF00107.26 ADH_zinc_N Family 1 116 130 55.1 7.2e-15 1 CL0063
Cotton_A_26101_CDS 11 56 10 56 PF03107.16 C1_2 Domain 2 47 47 31.1 2.2e-07 1 CL0006
Cotton_A_39386_CDS 90 181 83 191 PF00168.30 C2 Domain 8 93 103 41.1 1.7e-10 1 CL0154
Cotton_A_39386_CDS 250 500 250 501 PF07002.16 Copine Family 1 217 218 247.1 1.2e-73 1 CL0128
Cotton_A_10944_CDS 272 398 272 398 PF00168.30 C2 Domain 1 103 103 94.2 5e-27 1 CL0154
Cotton_A_10944_CDS 598 632 597 632 PF00614.22 PLDc Family 2 28 28 40.3 2.1e-10 1 CL0479
Cotton_A_10944_CDS 946 972 945 972 PF00614.22 PLDc Family 2 28 28 28.2 1.4e-06 1 CL0479
Cotton_A_10944_CDS 1019 1089 1019 1090 PF12357.8 PLD_C Family 1 71 72 104.8 1.6e-30 1 No_clan
Cotton_A_13335_CDS 3 315 2 318 PF08267.12 Meth_synt_1 Domain 2 310 313 398.1 3.1e-119 1 CL0160
Cotton_A_13335_CDS 432 755 432 756 PF01717.18 Meth_synt_2 Domain 1 323 324 516.4 3.1e-155 1 CL0160
Cotton_A_17570_CDS 31 88 31 88 PF08246.12 Inhibitor_I29 Domain 1 58 58 65.5 4.3e-18 1 No_clan
Cotton_A_17570_CDS 174 368 173 368 PF00112.23 Peptidase_C1 Domain 24 218 218 239.5 4.2e-71 1 CL0125
Cotton_A_19078_CDS 33 317 32 317 PF00069.25 Pkinase Domain 2 264 264 239.9 3.1e-71 1 CL0016
Cotton_A_09594_CDS 103 130 103 137 PF00786.28 PBD Domain 1 29 59 21.5 0.00022 1 No_clan
Cotton_A_09594_CDS 167 301 166 306 PF00620.27 RhoGAP Domain 2 146 152 78.4 5e-22 1 CL0409
Cotton_A_13585_CDS 8 96 8 96 PF15243.6 ANAPC15 Family 1 90 90 72.9 2.1e-20 1 No_clan
Cotton_A_31299_CDS 11 93 9 96 PF00153.27 Mito_carr Family 4 93 97 52.5 3.5e-14 1 No_clan
Cotton_A_31299_CDS 111 191 105 193 PF00153.27 Mito_carr Family 9 93 97 78.9 2e-22 1 No_clan
Cotton_A_31299_CDS 207 293 200 295 PF00153.27 Mito_carr Family 9 95 97 78.5 2.7e-22 1 No_clan
Cotton_A_35842_CDS 94 136 94 140 PF13041.6 PPR_2 Repeat 1 43 50 34.1 2.3e-08 1 CL0020
Cotton_A_35842_CDS 169 197 167 197 PF01535.20 PPR Family 3 31 31 27.1 3e-06 1 CL0020
Cotton_A_35842_CDS 199 225 198 228 PF01535.20 PPR Family 2 28 31 18.7 0.0014 1 CL0020
Cotton_A_35842_CDS 306 353 305 355 PF13041.6 PPR_2 Repeat 2 48 50 42.3 6.5e-11 1 CL0020
Cotton_A_35842_CDS 382 403 381 403 PF01535.20 PPR Family 4 25 31 13.6 0.063 1 CL0020
Cotton_A_35842_CDS 408 457 408 457 PF13041.6 PPR_2 Repeat 1 50 50 34.6 1.6e-08 1 CL0020
Cotton_A_34393_CDS 9 51 8 51 PF13639.6 zf-RING_2 Domain 2 44 44 55.1 6.9e-15 1 CL0229
Cotton_A_12121_CDS 3 67 2 68 PF05493.13 ATP_synt_H Family 2 61 62 73.0 2e-20 1 No_clan
Cotton_A_28889_CDS 1 132 1 132 PF00125.24 Histone Domain 1 131 131 181.1 1.1e-53 1 CL0012
Cotton_A_08408_CDS 2 204 1 204 PF14577.6 SEO_C Family 29 232 232 274.2 7.9e-82 1 No_clan
Cotton_A_11703_CDS 95 561 26 566 PF10151.9 TMEM214 Family 58 486 659 63.5 1.4e-17 1 No_clan
Cotton_A_09308_CDS 6 41 4 46 PF00646.33 F-box Domain 7 42 48 20.7 0.00028 1 CL0271
Cotton_A_09308_CDS 224 351 223 369 PF07734.13 FBA_1 Family 2 124 164 51.6 9.6e-14 1 CL0162
Cotton_A_30816_CDS 1 171 1 177 PF00067.22 p450 Domain 280 455 463 182.9 9.3e-54 1 No_clan
Cotton_A_16906_CDS 34 443 32 444 PF00501.28 AMP-binding Family 3 422 423 375.6 2.4e-112 1 CL0378
Cotton_A_16906_CDS 452 527 452 527 PF13193.6 AMP-binding_C Domain 1 76 76 58.8 7.7e-16 1 CL0531
Cotton_A_13701_CDS 178 199 177 199 PF00560.33 LRR_1 Repeat 2 23 23 9.4 1.8 1 CL0022
Cotton_A_31895_CDS 27 164 23 165 PF00892.20 EamA Family 7 136 137 55.7 5.6e-15 1 CL0184
Cotton_A_31895_CDS 199 337 198 338 PF00892.20 EamA Family 2 136 137 61.1 1.2e-16 1 CL0184
Cotton_A_19191_CDS 9 190 4 204 PF08626.11 TRAPPC9-Trs120 Family 6 184 1226 64.3 3.9e-18 1 No_clan
Cotton_A_19191_CDS 200 277 184 308 PF08626.11 TRAPPC9-Trs120 Family 241 318 1226 40.6 5.5e-11 1 No_clan
Cotton_A_19191_CDS 328 742 294 758 PF08626.11 TRAPPC9-Trs120 Family 437 864 1226 123.7 4.6e-36 1 No_clan
Cotton_A_19517_CDS 124 153 123 153 PF17123.5 zf-RING_11 Domain 2 29 29 38.7 6e-10 1 CL0229
Cotton_A_19517_CDS 360 466 360 466 PF13519.6 VWA_2 Domain 1 107 107 66.4 3.2e-18 1 CL0128
Cotton_A_38877_CDS 35 118 27 121 PF14363.6 AAA_assoc Family 10 93 96 41.1 1.7e-10 1 No_clan
Cotton_A_38877_CDS 222 340 221 340 PF00004.29 AAA Domain 2 132 132 48.2 1.4e-12 1 CL0023
Cotton_A_13442_CDS 431 495 356 495 PF14309.6 DUF4378 Family 102 165 165 27.2 4.3e-06 1 No_clan
Cotton_A_13989_CDS 88 195 79 203 PF11833.8 CPP1-like Family 11 131 197 34.5 1.5e-08 1 No_clan
Cotton_A_20611_CDS 31 73 30 73 PF08263.12 LRRNT_2 Family 2 41 41 30.4 3.4e-07 1 No_clan
Cotton_A_20611_CDS 328 505 311 577 PF07714.17 Pkinase_Tyr Domain 29 205 259 95.4 3.4e-27 1 CL0016
Cotton_A_17576_CDS 33 97 33 102 PF00332.18 Glyco_hydro_17 Domain 1 65 313 32.2 8.1e-08 1 CL0058
Cotton_A_05592_CDS 31 106 29 106 PF03386.14 ENOD93 Family 3 78 78 114.9 1.1e-33 1 No_clan
Cotton_A_07199_CDS 78 565 76 565 PF03055.15 RPE65 Family 3 463 463 323.2 3.4e-96 1 No_clan
Cotton_A_01002_CDS 5 67 5 67 PF05641.12 Agenet Domain 1 61 61 72.6 2.7e-20 1 CL0049
Cotton_A_14928_CDS 92 189 89 190 PF00085.20 Thioredoxin Domain 5 102 103 99.9 6.6e-29 1 CL0172
Cotton_A_29654_CDS 54 188 53 189 PF03087.14 DUF241 Family 2 134 234 121.0 6.6e-35 1 CL0133
Cotton_A_29654_CDS 189 269 187 270 PF03087.14 DUF241 Family 157 233 234 63.3 2.9e-17 1 CL0133
Cotton_A_03678_CDS 2 40 1 46 PF12937.7 F-box-like Domain 2 41 48 34.1 1.8e-08 1 CL0271
Cotton_A_03678_CDS 216 362 215 379 PF07734.13 FBA_1 Family 2 148 164 38.4 1.1e-09 1 CL0162
Cotton_A_32304_CDS 54 290 49 292 PF13561.6 adh_short_C2 Domain 4 232 234 194.6 1.8e-57 1 CL0063
Cotton_A_28875_CDS 43 226 1 226 PF00230.20 MIP Family 45 227 227 66.5 2.7e-18 1 No_clan
Cotton_A_14685_CDS 35 225 34 275 PF01301.19 Glyco_hydro_35 Domain 2 194 316 253.3 4.2e-75 1 CL0058
Cotton_A_23265_CDS 6 177 5 177 PF00025.21 Arf Domain 2 175 175 266.8 6.2e-80 1 CL0023
Cotton_A_18615_CDS 142 211 142 212 PF00076.22 RRM_1 Domain 1 69 70 71.0 5.3e-20 1 CL0221
Cotton_A_18615_CDS 236 306 236 306 PF00076.22 RRM_1 Domain 1 70 70 77.7 4.5e-22 1 CL0221
Cotton_A_34925_CDS 38 401 38 426 PF01490.18 Aa_trans Family 1 386 409 224.6 1.7e-66 1 CL0062
Cotton_A_05537_CDS 27 267 27 269 PF00573.22 Ribosomal_L4 Family 1 190 192 137.4 4.4e-40 1 No_clan
Cotton_A_05537_CDS 281 354 281 356 PF14374.6 Ribos_L4_asso_C Domain 1 75 76 99.1 1.1e-28 1 No_clan
Cotton_A_23993_CDS 1 22 1 25 PF01535.20 PPR Family 6 27 31 12.1 0.18 1 CL0020
Cotton_A_23993_CDS 24 72 24 73 PF13041.6 PPR_2 Repeat 1 49 50 50.6 1.6e-13 1 CL0020
Cotton_A_23993_CDS 125 172 125 174 PF13041.6 PPR_2 Repeat 1 48 50 36.6 3.9e-09 1 CL0020
Cotton_A_23993_CDS 201 225 199 227 PF01535.20 PPR Family 3 27 31 14.7 0.027 1 CL0020
Cotton_A_29104_CDS 154 249 153 250 PF00011.21 HSP20 Family 2 87 102 47.2 2e-12 1 CL0190
Cotton_A_10463_CDS 32 81 32 81 PF08100.11 Dimerisation Domain 1 51 51 56.1 2.8e-15 1 CL0123
Cotton_A_10463_CDS 133 348 133 348 PF00891.18 Methyltransf_2 Domain 1 210 210 178.1 1.4e-52 1 CL0063
Cotton_A_16300_CDS 16 123 7 123 PF00141.23 peroxidase Domain 116 229 229 67.7 1.2e-18 1 CL0617
Cotton_A_04162_CDS 43 285 43 286 PF00141.23 peroxidase Domain 1 228 229 271.2 7.5e-81 1 CL0617
Cotton_A_11807_CDS 6 64 6 64 PF05641.12 Agenet Domain 1 61 61 48.8 7.1e-13 1 CL0049
Cotton_A_11807_CDS 275 329 273 332 PF03735.14 ENT Family 4 58 70 49.1 4.5e-13 1 No_clan
Cotton_A_07269_CDS 268 398 268 399 PF00430.18 ATP-synt_B Family 1 131 132 56.8 2.4e-15 1 CL0255
Cotton_A_24222_CDS 6 226 2 226 PF00230.20 MIP Family 9 227 227 66.7 2.3e-18 1 No_clan
Cotton_A_38396_CDS 15 59 13 62 PF00249.31 Myb_DNA-binding Domain 3 43 46 25.2 1.4e-05 1 CL0123
Cotton_A_28188_CDS 78 189 78 189 PF04134.12 DUF393 Family 1 113 113 98.7 5e-28 1 No_clan
Cotton_A_29406_CDS 27 152 25 152 PF01092.19 Ribosomal_S6e Family 3 125 125 186.0 2.1e-55 1 No_clan
Cotton_A_21153_CDS 59 143 59 144 PF03101.15 FAR1 Domain 1 89 90 71.6 6.7e-20 1 CL0274
Cotton_A_15698_CDS 63 120 63 122 PF13450.6 NAD_binding_8 Domain 1 54 68 38.8 8.3e-10 1 CL0063
Cotton_A_09173_CDS 106 177 106 177 PF04640.14 PLATZ Family 1 82 82 100.4 6.5e-29 1 No_clan
Cotton_A_31610_CDS 52 486 51 486 PF00083.24 Sugar_tr Family 2 452 452 324.4 1.1e-96 1 CL0015
Cotton_A_06922_CDS 25 83 25 85 PF13921.6 Myb_DNA-bind_6 Domain 1 58 60 60.8 1.1e-16 1 CL0123
Cotton_A_13233_CDS 186 313 186 313 PF10539.9 Dev_Cell_Death Domain 1 127 127 140.3 2.9e-41 1 No_clan
Cotton_A_09802_CDS 93 147 92 148 PF00046.29 Homeodomain Domain 2 56 57 60.9 7.5e-17 1 CL0123
Cotton_A_09802_CDS 149 183 149 184 PF02183.18 HALZ Coiled-coil 1 42 43 41.8 9.1e-11 1 No_clan
Cotton_A_17940_CDS 44 253 44 255 PF06764.11 DUF1223 Family 1 200 202 215.5 7.3e-64 1 CL0172
Cotton_A_11385_CDS 50 86 49 87 PF13436.6 Gly-zipper_OmpA Family 4 39 44 25.5 8.5e-06 1 CL0500
Cotton_A_11385_CDS 189 232 188 232 PF13639.6 zf-RING_2 Domain 2 44 44 47.4 1.7e-12 1 CL0229
Cotton_A_07958_CDS 111 182 110 185 PF04969.16 CS Domain 2 74 76 61.2 1.5e-16 1 CL0190
Cotton_A_22355_CDS 96 409 95 410 PF03016.15 Exostosin Family 2 299 300 211.6 1.4e-62 1 No_clan
Cotton_A_05561_CDS 34 277 20 287 PF00248.21 Aldo_ket_red Domain 22 283 294 157.5 4.1e-46 1 No_clan
Cotton_A_19813_CDS 12 160 11 160 PF00582.26 Usp Domain 4 141 141 101.6 4.9e-29 1 CL0039
Cotton_A_29727_CDS 39 281 39 281 PF00141.23 peroxidase Domain 1 229 229 246.8 2.1e-73 1 CL0617
Cotton_A_12007_CDS 53 120 52 122 PF03735.14 ENT Family 2 68 70 92.2 1.6e-26 1 No_clan
Cotton_A_06047_CDS 62 146 62 146 PF14438.6 SM-ATX Domain 1 81 81 90.6 5.2e-26 1 CL0527
Cotton_A_06047_CDS 222 292 222 292 PF06741.13 LsmAD Domain 1 71 71 90.3 8.8e-26 1 No_clan
Cotton_A_24772_CDS 10 105 10 108 PF03195.14 LOB Family 1 96 99 122.9 6.6e-36 1 No_clan
Cotton_A_26374_CDS 422 506 422 507 PF04795.12 PAPA-1 Family 1 85 86 70.6 1.4e-19 1 No_clan
Cotton_A_26374_CDS 523 554 523 554 PF04438.16 zf-HIT Domain 1 30 30 30.1 3.1e-07 1 CL0175
Cotton_A_33126_CDS 89 487 81 508 PF00067.22 p450 Domain 31 439 463 217.2 3.5e-64 1 No_clan
Cotton_A_37187_CDS 21 187 19 192 PF12819.7 Malectin_like Domain 150 310 336 63.8 1.6e-17 1 CL0202
Cotton_A_37187_CDS 234 495 229 500 PF07714.17 Pkinase_Tyr Domain 7 254 259 144.5 3.3e-42 1 CL0016
Cotton_A_02775_CDS 17 82 16 82 PF00035.26 dsrm Domain 2 67 67 54.8 1.2e-14 1 CL0196
Cotton_A_02775_CDS 103 166 102 168 PF00035.26 dsrm Domain 2 65 67 51.8 1e-13 1 CL0196
Cotton_A_09007_CDS 1 140 1 142 PF01217.20 Clat_adaptor_s Domain 1 140 142 182.1 4.9e-54 1 CL0212
Cotton_A_35496_CDS 2 100 1 101 PF00190.22 Cupin_1 Domain 48 150 151 98.1 3.5e-28 1 CL0029
Cotton_A_38518_CDS 14 65 9 65 PF13456.6 RVT_3 Domain 72 124 124 21.6 0.00014 1 CL0219
Cotton_A_34852_CDS 60 158 60 158 PF08241.12 Methyltransf_11 Domain 1 96 96 54.7 1.2e-14 1 CL0063
Cotton_A_34852_CDS 277 428 267 430 PF13489.6 Methyltransf_23 Domain 17 163 165 80.3 1.4e-22 1 CL0063
Cotton_A_06823_CDS 7 28 7 28 PF18044.1 zf-CCCH_4 Domain 1 22 22 26.0 5.7e-06 1 CL0537
Cotton_A_06823_CDS 36 55 35 56 PF18044.1 zf-CCCH_4 Domain 2 21 22 30.9 1.7e-07 1 CL0537
Cotton_A_06823_CDS 145 167 144 168 PF00642.24 zf-CCCH Family 3 26 27 20.6 0.00031 1 CL0537
Cotton_A_06823_CDS 211 268 211 268 PF00097.25 zf-C3HC4 Domain 1 41 41 29.5 5.1e-07 1 CL0229
Cotton_A_02451_CDS 66 311 38 315 PF00481.21 PP2C Family 34 255 258 135.4 2.7e-39 1 CL0238
Cotton_A_01493_CDS 214 272 214 272 PF13921.6 Myb_DNA-bind_6 Domain 1 58 60 69.4 2.2e-19 1 CL0123
Cotton_A_38957_CDS 288 385 286 385 PF14372.6 DUF4413 Family 3 100 100 101.9 2e-29 1 No_clan
Cotton_A_38957_CDS 515 597 515 597 PF05699.14 Dimer_Tnp_hAT Domain 1 86 86 92.2 1.3e-26 1 No_clan
Cotton_A_29868_CDS 18 62 17 64 PF02042.15 RWP-RK Family 2 46 49 70.1 1.1e-19 1 No_clan
Cotton_A_13440_CDS 82 115 82 116 PF08880.11 QLQ Domain 1 34 35 48.6 4.7e-13 1 No_clan
Cotton_A_13440_CDS 147 189 147 189 PF08879.10 WRC Domain 1 43 43 77.4 4.6e-22 1 No_clan
Cotton_A_30923_CDS 212 254 211 254 PF13639.6 zf-RING_2 Domain 2 44 44 47.6 1.5e-12 1 CL0229
Cotton_A_14573_CDS 195 444 195 444 PF04646.12 DUF604 Family 1 256 256 359.8 7.3e-108 1 CL0110
Cotton_A_00422_CDS 83 235 83 235 PF00005.27 ABC_tran Domain 1 137 137 92.0 4.4e-26 1 CL0023
Cotton_A_00422_CDS 392 600 390 600 PF01061.24 ABC2_membrane Family 3 210 210 136.7 7e-40 1 CL0181
Cotton_A_11685_CDS 1 381 1 381 PF05633.11 BPS1 Family 1 388 388 516.7 3.6e-155 1 CL0133
Cotton_A_40037_CDS 53 110 49 110 PF13855.6 LRR_8 Repeat 5 61 61 43.2 2.3e-11 1 CL0022
Cotton_A_40037_CDS 123 182 122 182 PF13855.6 LRR_8 Repeat 2 61 61 35.1 8.1e-09 1 CL0022
Cotton_A_40037_CDS 220 240 220 242 PF00560.33 LRR_1 Repeat 1 21 23 10.4 0.84 1 CL0022
Cotton_A_40037_CDS 244 302 242 302 PF13855.6 LRR_8 Repeat 3 61 61 35.8 4.8e-09 1 CL0022
Cotton_A_40037_CDS 409 467 407 467 PF13855.6 LRR_8 Repeat 3 61 61 34.3 1.5e-08 1 CL0022
Cotton_A_01986_CDS 379 435 379 435 PF05383.17 La Domain 1 59 59 74.6 4.8e-21 1 CL0123
Cotton_A_09221_CDS 31 75 30 77 PF00956.18 NAP Family 3 47 270 29.6 3.7e-07 1 No_clan
Cotton_A_09221_CDS 75 221 74 223 PF00956.18 NAP Family 86 268 270 100.9 6.6e-29 1 No_clan
Cotton_A_23118_CDS 51 191 45 191 PF10604.9 Polyketide_cyc2 Family 8 143 143 36.4 5.7e-09 1 CL0209
Cotton_A_11046_CDS 1 141 1 149 PF03094.15 Mlo Family 2 131 479 167.9 2.6e-49 1 No_clan
Cotton_A_11046_CDS 177 545 158 546 PF03094.15 Mlo Family 130 478 479 576.2 4e-173 1 No_clan
Cotton_A_28829_CDS 11 74 10 75 PF01423.22 LSM Domain 2 66 67 58.6 3.7e-16 1 CL0527
Cotton_A_06401_CDS 171 394 170 395 PF03407.16 Nucleotid_trans Family 2 212 212 183.0 7.2e-54 1 CL0110
Cotton_A_10869_CDS 102 128 101 130 PF01535.20 PPR Family 2 28 31 15.6 0.014 1 CL0020
Cotton_A_10869_CDS 178 201 175 202 PF01535.20 PPR Family 7 30 31 11.0 0.41 1 CL0020
Cotton_A_10869_CDS 203 230 203 231 PF01535.20 PPR Family 1 28 31 20.0 0.00053 1 CL0020
Cotton_A_10869_CDS 308 338 308 338 PF01535.20 PPR Family 1 31 31 23.4 4.4e-05 1 CL0020
Cotton_A_10869_CDS 380 403 379 408 PF01535.20 PPR Family 3 26 31 10.5 0.61 1 CL0020
Cotton_A_10869_CDS 410 439 409 439 PF01535.20 PPR Family 2 31 31 33.6 2.6e-08 1 CL0020
Cotton_A_10869_CDS 482 503 479 507 PF01535.20 PPR Family 4 25 31 12.0 0.19 1 CL0020
Cotton_A_10869_CDS 507 554 506 555 PF13041.6 PPR_2 Repeat 2 49 50 36.8 3.3e-09 1 CL0020
Cotton_A_10869_CDS 607 655 607 656 PF13041.6 PPR_2 Repeat 1 49 50 48.9 5.7e-13 1 CL0020
Cotton_A_10869_CDS 753 776 748 776 PF01535.20 PPR Family 8 31 31 10.5 0.61 1 CL0020
Cotton_A_36167_CDS 59 143 59 144 PF03101.15 FAR1 Domain 1 89 90 82.6 2.4e-23 1 CL0274
Cotton_A_36167_CDS 266 358 265 359 PF10551.9 MULE Domain 2 95 96 90.2 8.8e-26 1 CL0219
Cotton_A_36167_CDS 552 585 538 588 PF04434.17 SWIM Domain 9 37 40 21.2 0.00017 1 No_clan
Cotton_A_28778_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 58.1 7.4e-16 1 CL0123
Cotton_A_28778_CDS 67 112 67 112 PF00249.31 Myb_DNA-binding Domain 1 46 46 47.1 2e-12 1 CL0123
Cotton_A_34409_CDS 115 203 114 208 PF00254.28 FKBP_C Domain 2 81 94 87.9 4.3e-25 1 CL0487
Cotton_A_07868_CDS 65 203 64 207 PF00190.22 Cupin_1 Domain 3 140 151 141.0 2.2e-41 1 CL0029
Cotton_A_12054_CDS 44 158 43 159 PF07732.15 Cu-oxidase_3 Domain 2 118 119 140.5 2.3e-41 1 CL0026
Cotton_A_12054_CDS 170 353 169 354 PF00394.22 Cu-oxidase Domain 2 158 159 139.5 9.8e-41 1 CL0026
Cotton_A_12054_CDS 466 598 462 599 PF07731.14 Cu-oxidase_2 Domain 2 136 137 134.3 2.2e-39 1 CL0026
Cotton_A_07579_CDS 227 325 227 325 PF04749.17 PLAC8 Family 1 99 99 81.4 7.5e-23 1 No_clan
Cotton_A_25212_CDS 7 108 6 110 PF00466.20 Ribosomal_L10 Family 2 98 100 72.1 3.2e-20 1 No_clan
Cotton_A_25212_CDS 114 183 114 183 PF17777.1 RL10P_insert Domain 1 71 71 72.7 1.7e-20 1 No_clan
Cotton_A_25212_CDS 234 301 234 302 PF00428.19 Ribosomal_60s Family 1 70 88 42.2 9.4e-11 1 No_clan
Cotton_A_18257_CDS 43 102 43 102 PF02704.14 GASA Family 1 60 60 76.8 1e-21 1 No_clan
Cotton_A_21687_CDS 190 853 190 853 PF00063.21 Myosin_head Domain 1 677 677 760.5 1.4e-228 1 CL0023
Cotton_A_21687_CDS 871 888 868 888 PF00612.27 IQ Motif 4 21 21 13.5 0.046 1 CL0220
Cotton_A_21687_CDS 927 944 925 945 PF00612.27 IQ Motif 3 20 21 21.7 0.00011 1 CL0220
Cotton_A_20565_CDS 37 189 36 192 PF12619.8 MCM2_N Family 2 149 153 69.8 3.1e-19 1 No_clan
Cotton_A_20565_CDS 216 309 215 309 PF14551.6 MCM_N Domain 2 104 104 51.7 1e-13 1 No_clan
Cotton_A_20565_CDS 315 442 315 444 PF17207.3 MCM_OB Domain 1 124 126 126.1 7.1e-37 1 CL0021
Cotton_A_20565_CDS 483 705 482 705 PF00493.23 MCM Domain 2 224 224 343.8 2.9e-103 1 CL0023
Cotton_A_20565_CDS 742 826 742 826 PF17855.1 MCM_lid Domain 1 87 87 94.8 3.2e-27 1 CL0671
Cotton_A_20240_CDS 47 158 35 161 PF00293.28 NUDIX Domain 17 128 131 49.8 3.3e-13 1 CL0261
Cotton_A_20623_CDS 82 354 80 354 PF07714.17 Pkinase_Tyr Domain 3 259 259 213.8 2.5e-63 1 CL0016
Cotton_A_10859_CDS 35 208 33 230 PF07651.16 ANTH Domain 3 176 277 72.7 2.3e-20 1 CL0009
Cotton_A_10496_CDS 125 369 122 369 PF00481.21 PP2C Family 4 258 258 203.6 4e-60 1 CL0238
Cotton_A_22871_CDS 472 522 469 532 PF13432.6 TPR_16 Family 9 61 68 17.0 0.0071 1 CL0020
Cotton_A_22871_CDS 623 654 621 654 PF13181.6 TPR_8 Repeat 3 34 34 12.5 0.14 1 CL0020
Cotton_A_22539_CDS 1 49 1 51 PF00646.33 F-box Domain 6 46 48 22.0 0.00011 1 CL0271
Cotton_A_22539_CDS 61 273 61 273 PF01167.18 Tub Domain 1 176 241 149.8 1e-43 1 CL0395
Cotton_A_16395_CDS 89 246 88 247 PF05142.12 DUF702 Family 2 149 150 222.3 3.5e-66 1 No_clan
Cotton_A_10224_CDS 73 296 72 296 PF05891.12 Methyltransf_PK Family 2 218 218 319.7 8.2e-96 1 CL0063
Cotton_A_34158_CDS 112 166 111 167 PF00046.29 Homeodomain Domain 2 56 57 60.4 1.1e-16 1 CL0123
Cotton_A_34158_CDS 168 201 168 203 PF02183.18 HALZ Coiled-coil 1 41 43 33.6 3.4e-08 1 No_clan
Cotton_A_04615_CDS 248 283 245 283 PF13414.6 TPR_11 Repeat 7 42 42 28.1 1.2e-06 1 CL0020
Cotton_A_00752_CDS 158 205 157 206 PF13041.6 PPR_2 Repeat 2 49 50 51.0 1.2e-13 1 CL0020
Cotton_A_00752_CDS 217 275 216 276 PF13812.6 PPR_3 Repeat 2 60 63 39.2 5.3e-10 1 CL0020
Cotton_A_00752_CDS 302 330 301 331 PF01535.20 PPR Family 2 30 31 13.6 0.06 1 CL0020
Cotton_A_00752_CDS 334 382 333 382 PF13041.6 PPR_2 Repeat 2 50 50 43.4 2.8e-11 1 CL0020
Cotton_A_00752_CDS 404 452 404 452 PF13041.6 PPR_2 Repeat 2 50 50 38.3 1.1e-09 1 CL0020
Cotton_A_07982_CDS 92 113 91 115 PF13202.6 EF-hand_5 Domain 2 23 25 18.0 0.0014 1 CL0220
Cotton_A_07982_CDS 121 179 119 183 PF13499.6 EF-hand_7 Domain 3 67 71 32.8 7.2e-08 1 CL0220
Cotton_A_07982_CDS 223 306 218 308 PF00153.27 Mito_carr Family 6 95 97 81.4 3.4e-23 1 No_clan
Cotton_A_07982_CDS 315 402 313 406 PF00153.27 Mito_carr Family 3 92 97 81.8 2.6e-23 1 No_clan
Cotton_A_07982_CDS 414 502 411 505 PF00153.27 Mito_carr Family 4 93 97 85.4 1.9e-24 1 No_clan
Cotton_A_01730_CDS 6 256 4 257 PF00335.20 Tetraspanin Family 3 228 229 111.7 4.3e-32 1 CL0347
Cotton_A_01507_CDS 155 204 155 204 PF13041.6 PPR_2 Repeat 1 50 50 32.9 5.5e-08 1 CL0020
Cotton_A_01507_CDS 223 251 222 253 PF12854.7 PPR_1 Repeat 2 30 34 29.9 3.4e-07 1 CL0020
Cotton_A_01507_CDS 261 310 261 310 PF13041.6 PPR_2 Repeat 1 50 50 56.0 3.2e-15 1 CL0020
Cotton_A_01507_CDS 331 380 331 380 PF13041.6 PPR_2 Repeat 1 50 50 65.7 3e-18 1 CL0020
Cotton_A_01507_CDS 398 428 397 430 PF12854.7 PPR_1 Repeat 2 32 34 31.6 9.9e-08 1 CL0020
Cotton_A_32828_CDS 40 129 35 130 PF01248.26 Ribosomal_L7Ae Domain 6 94 95 97.4 3.1e-28 1 CL0101
Cotton_A_17658_CDS 2 228 2 230 PF12481.8 DUF3700 Domain 1 226 228 339.5 7.9e-102 1 CL0052
Cotton_A_26723_CDS 111 244 111 245 PF02630.14 SCO1-SenC Family 1 133 134 147.3 2.3e-43 1 CL0172
Cotton_A_10969_CDS 1 76 1 78 PF01249.18 Ribosomal_S21e Family 1 76 79 128.5 7.4e-38 1 No_clan
Cotton_A_06892_CDS 117 253 117 253 PF03350.16 UPF0114 Family 1 118 118 119.9 6.5e-35 1 No_clan
Cotton_A_07992_CDS 41 235 34 235 PF05634.11 APO_RNA-bind Family 9 200 200 262.2 2.3e-78 1 No_clan
Cotton_A_07992_CDS 276 394 263 403 PF05634.11 APO_RNA-bind Family 66 183 200 93.7 9.5e-27 1 No_clan
Cotton_A_24399_CDS 83 321 83 340 PF01370.21 Epimerase Family 1 232 241 172.3 1.2e-50 1 CL0063
Cotton_A_36319_CDS 55 129 55 130 PF00935.19 Ribosomal_L44 Family 1 75 76 119.1 8.6e-35 1 CL0167
Cotton_A_19922_CDS 100 469 100 471 PF00764.19 Arginosuc_synth Family 1 386 388 468.9 1.5e-140 1 CL0039
Cotton_A_30811_CDS 37 102 37 104 PF12041.8 DELLA Domain 1 67 69 106.8 3.9e-31 1 No_clan
Cotton_A_30811_CDS 171 533 171 533 PF03514.14 GRAS Family 1 374 374 458.3 1.8e-137 1 CL0063
Cotton_A_18880_CDS 8 178 8 179 PF00071.22 Ras Domain 1 161 162 175.1 7.9e-52 1 CL0023
Cotton_A_21432_CDS 20 97 8 99 PF00125.24 Histone Domain 51 129 131 48.4 1.1e-12 1 CL0012
Cotton_A_21432_CDS 100 133 100 134 PF16211.5 Histone_H2A_C Family 1 34 35 68.1 3.8e-19 1 No_clan
Cotton_A_12035_CDS 16 106 15 109 PF12796.7 Ank_2 Repeat 2 80 83 49.0 7e-13 1 CL0465
Cotton_A_12035_CDS 112 184 104 188 PF12796.7 Ank_2 Repeat 25 79 83 42.8 5.9e-11 1 CL0465
Cotton_A_12035_CDS 195 221 195 226 PF00023.30 Ank Repeat 2 27 32 21.5 0.00022 1 CL0465
Cotton_A_21804_CDS 1 155 1 155 PF00407.19 Bet_v_1 Domain 1 151 151 99.7 1.4e-28 1 CL0209
Cotton_A_09159_CDS 11 254 10 254 PF02190.16 LON_substr_bdg Family 2 208 208 77.8 1e-21 1 CL0178
Cotton_A_09159_CDS 405 542 405 546 PF00004.29 AAA Domain 1 127 132 78.8 4.9e-22 1 CL0023
Cotton_A_09159_CDS 670 876 669 878 PF05362.13 Lon_C Domain 2 203 205 257.8 6e-77 1 CL0329
Cotton_A_41215_CDS 4 55 1 72 PF17917.1 RT_RNaseH Domain 30 79 105 50.5 2.1e-13 1 CL0219
Cotton_A_12819_CDS 76 203 76 203 PF14365.6 Neprosin_AP Family 1 118 118 150.7 2.3e-44 1 No_clan
Cotton_A_12819_CDS 217 440 217 440 PF03080.15 Neprosin Family 1 222 222 305.3 2e-91 1 No_clan
Cotton_A_17268_CDS 18 365 17 396 PF03321.13 GH3 Family 2 342 527 374.5 9.9e-112 1 CL0378
Cotton_A_17268_CDS 402 482 386 483 PF03321.13 GH3 Family 452 526 527 63.3 2e-17 1 CL0378
Cotton_A_23209_CDS 46 269 45 269 PF03087.14 DUF241 Family 2 234 234 243.0 3.5e-72 1 CL0133
Cotton_A_23193_CDS 39 124 37 128 PF00153.27 Mito_carr Family 4 91 97 77.4 5.7e-22 1 No_clan
Cotton_A_23193_CDS 141 232 139 234 PF00153.27 Mito_carr Family 3 95 97 88.5 2e-25 1 No_clan
Cotton_A_23193_CDS 243 346 242 349 PF00153.27 Mito_carr Family 2 93 97 86.3 1e-24 1 No_clan
Cotton_A_28258_CDS 34 110 33 110 PF09430.10 DUF2012 Family 36 123 123 50.6 2e-13 1 CL0287
Cotton_A_00421_CDS 2 363 1 365 PF00232.18 Glyco_hydro_1 Domain 109 451 453 343.8 1.1e-102 1 CL0058
Cotton_A_03499_CDS 23 228 22 228 PF01680.17 SOR_SNZ Domain 2 207 207 374.3 1.6e-112 1 CL0036
Cotton_A_22455_CDS 26 259 23 267 PF00083.24 Sugar_tr Family 3 213 452 93.1 1.7e-26 1 CL0015
Cotton_A_30400_CDS 287 351 287 351 PF00226.31 DnaJ Domain 1 63 63 68.7 3.5e-19 1 CL0392
Cotton_A_30400_CDS 384 480 383 480 PF14901.6 Jiv90 Domain 2 93 93 112.5 7.7e-33 1 No_clan
Cotton_A_15211_CDS 34 102 33 107 PF03819.17 MazG Domain 2 61 74 30.6 2.9e-07 1 CL0231
Cotton_A_25649_CDS 81 347 76 352 PF00069.25 Pkinase Domain 6 259 264 157.0 5.6e-46 1 CL0016
Cotton_A_28327_CDS 217 275 216 276 PF13855.6 LRR_8 Repeat 2 60 61 36.4 3.2e-09 1 CL0022
Cotton_A_28327_CDS 287 303 286 309 PF13516.6 LRR_6 Repeat 2 18 24 11.4 0.27 1 CL0022
Cotton_A_02350_CDS 134 415 132 416 PF06814.13 Lung_7-TM_R Family 7 294 295 119.6 1.5e-34 1 CL0192
Cotton_A_26993_CDS 99 149 98 150 PF00847.20 AP2 Domain 2 53 54 48.7 6.5e-13 1 CL0081
Cotton_A_02760_CDS 49 223 45 225 PF07991.12 IlvN Family 5 161 165 96.0 1.7e-27 1 CL0063
Cotton_A_02760_CDS 232 376 231 377 PF01450.19 IlvC Family 2 143 144 117.3 6.4e-34 1 CL0106
Cotton_A_06348_CDS 132 181 131 182 PF00847.20 AP2 Domain 3 53 54 50.5 1.8e-13 1 CL0081
Cotton_A_33028_CDS 13 76 12 76 PF00808.23 CBFD_NFYB_HMF Domain 2 65 65 68.6 4.1e-19 1 CL0012
Cotton_A_17778_CDS 191 248 190 248 PF03106.15 WRKY Domain 2 59 59 90.1 7.8e-26 1 CL0274
Cotton_A_31152_CDS 30 133 28 134 PF13947.6 GUB_WAK_bind Domain 4 105 106 67.5 1.5e-18 1 No_clan
Cotton_A_31152_CDS 249 350 246 351 PF13947.6 GUB_WAK_bind Domain 6 105 106 43.8 3.5e-11 1 No_clan
Cotton_A_13101_CDS 46 373 43 375 PF00520.31 Ion_trans Family 4 243 245 93.9 8.6e-27 1 CL0030
Cotton_A_34013_CDS 18 110 16 112 PF13837.6 Myb_DNA-bind_4 Domain 3 88 90 50.0 3e-13 1 CL0123
Cotton_A_00928_CDS 22 47 22 48 PF13912.6 zf-C2H2_6 Domain 1 26 27 47.8 9.3e-13 1 CL0361
Cotton_A_00928_CDS 70 94 69 95 PF13912.6 zf-C2H2_6 Domain 2 26 27 38.3 8.9e-10 1 CL0361
Cotton_A_14036_CDS 104 353 104 359 PF00795.22 CN_hydrolase Family 1 254 261 208.4 1.1e-61 1 No_clan
Cotton_A_26332_CDS 11 460 11 470 PF00067.22 p450 Domain 1 454 463 331.2 9.9e-99 1 No_clan
Cotton_A_30689_CDS 132 408 131 409 PF03016.15 Exostosin Family 2 299 300 197.9 2.1e-58 1 No_clan
Cotton_A_12731_CDS 112 423 111 429 PF13898.6 DUF4205 Domain 3 282 347 206.1 6.8e-61 1 No_clan
Cotton_A_00811_CDS 9 98 9 99 PF13850.6 ERGIC_N Domain 1 90 91 103.1 7.5e-30 1 No_clan
Cotton_A_00811_CDS 150 367 150 367 PF07970.12 COPIIcoated_ERV Family 1 221 221 282.3 3e-84 1 No_clan
Cotton_A_25069_CDS 180 221 180 223 PF15985.5 KH_6 Domain 1 44 46 39.7 4.5e-10 1 CL0007
Cotton_A_27830_CDS 3 213 3 214 PF00091.25 Tubulin Domain 1 196 197 227.0 2.3e-67 1 CL0566
Cotton_A_27830_CDS 263 392 263 393 PF03953.17 Tubulin_C Domain 1 125 126 172.4 4.2e-51 1 CL0442
Cotton_A_09377_CDS 15 120 14 121 PF04718.15 ATP-synt_G Family 2 99 100 80.1 1.7e-22 1 No_clan
Cotton_A_13339_CDS 17 133 17 133 PF02136.20 NTF2 Domain 1 120 120 116.1 1.3e-33 1 CL0051
Cotton_A_13339_CDS 301 358 301 368 PF00076.22 RRM_1 Domain 1 59 70 47.3 1.3e-12 1 CL0221
Cotton_A_31997_CDS 4 63 1 96 PF14111.6 DUF4283 Domain 12 71 145 28.5 8.9e-07 1 No_clan
Cotton_A_08598_CDS 34 174 32 174 PF00134.23 Cyclin_N Domain 5 127 127 72.0 3.7e-20 1 CL0065
Cotton_A_18817_CDS 7 92 6 93 PF03083.16 MtN3_slv Family 2 86 87 95.4 1.6e-27 1 CL0141
Cotton_A_18817_CDS 128 210 127 213 PF03083.16 MtN3_slv Family 2 84 87 82.4 1.8e-23 1 CL0141
Cotton_A_17905_CDS 7 97 7 98 PF13850.6 ERGIC_N Domain 1 90 91 84.8 4e-24 1 No_clan
Cotton_A_17905_CDS 145 215 142 241 PF00085.20 Thioredoxin Domain 4 67 103 37.5 1.8e-09 1 CL0172
Cotton_A_17905_CDS 262 442 246 442 PF07970.12 COPIIcoated_ERV Family 44 221 221 104.0 9.8e-30 1 No_clan
Cotton_A_28655_CDS 96 111 86 114 PF14383.6 VARLMGL Domain 12 27 32 21.5 0.00012 1 No_clan
Cotton_A_28655_CDS 712 873 709 873 PF14309.6 DUF4378 Family 4 165 165 103.7 1.3e-29 1 No_clan
Cotton_A_07073_CDS 56 345 53 345 PF03151.16 TPT Family 4 290 290 162.5 1.3e-47 1 CL0184
Cotton_A_24086_CDS 15 111 11 111 PF00044.24 Gp_dh_N Domain 8 101 101 99.6 1e-28 1 CL0063
Cotton_A_24086_CDS 117 271 114 271 PF02800.20 Gp_dh_C Domain 4 158 158 230.6 6.1e-69 1 CL0139
Cotton_A_13048_CDS 50 100 24 100 PF02874.23 ATP-synt_ab_N Domain 19 69 69 37.4 2.6e-09 1 CL0275
Cotton_A_13048_CDS 157 386 157 386 PF00006.25 ATP-synt_ab Domain 1 213 213 228.1 9.1e-68 1 CL0023
Cotton_A_12816_CDS 55 70 52 76 PF01535.20 PPR Family 10 25 31 9.7 1.1 1 CL0020
Cotton_A_12816_CDS 82 127 79 127 PF13041.6 PPR_2 Repeat 5 50 50 37.6 1.8e-09 1 CL0020
Cotton_A_12816_CDS 138 196 136 198 PF13812.6 PPR_3 Repeat 3 61 63 27.6 2.3e-06 1 CL0020
Cotton_A_12816_CDS 258 300 256 302 PF13041.6 PPR_2 Repeat 6 48 50 42.2 6.8e-11 1 CL0020
Cotton_A_03934_CDS 6 99 6 99 PF09177.11 Syntaxin-6_N Domain 1 99 99 84.7 5.3e-24 1 No_clan
Cotton_A_03934_CDS 183 234 182 234 PF05739.19 SNARE Family 2 53 53 40.7 1.7e-10 1 No_clan
Cotton_A_28720_CDS 83 126 82 126 PF13639.6 zf-RING_2 Domain 2 44 44 44.0 2e-11 1 CL0229
Cotton_A_01837_CDS 123 385 123 385 PF00069.25 Pkinase Domain 1 264 264 235.1 8.8e-70 1 CL0016
Cotton_A_20759_CDS 2 272 1 274 PF05055.12 DUF677 Family 62 334 336 82.2 3.1e-23 1 CL0133
Cotton_A_18317_CDS 12 90 12 90 PF05008.15 V-SNARE Family 1 79 79 78.3 4.4e-22 1 CL0147
Cotton_A_18317_CDS 128 193 117 193 PF12352.8 V-SNARE_C Domain 1 66 66 82.6 1.8e-23 1 CL0147
Cotton_A_20406_CDS 50 161 10 161 PF04885.13 Stig1 Family 36 139 139 112.1 2.9e-32 1 No_clan
Cotton_A_08779_CDS 10 57 7 67 PF00063.21 Myosin_head Domain 154 201 677 57.4 8.1e-16 1 CL0023
Cotton_A_38831_CDS 296 338 295 338 PF13639.6 zf-RING_2 Domain 2 44 44 49.3 4.5e-13 1 CL0229
Cotton_A_06594_CDS 13 148 11 148 PF04652.16 Vta1 Family 4 145 145 150.7 2.5e-44 1 No_clan
Cotton_A_06594_CDS 377 414 377 414 PF18097.1 Vta1_C Domain 1 38 38 42.2 4.8e-11 1 No_clan
Cotton_A_28834_CDS 8 39 2 39 PF02365.15 NAM Family 93 126 126 23.0 0.00012 1 No_clan
Cotton_A_12543_CDS 71 312 71 317 PF12697.7 Abhydrolase_6 Domain 1 211 220 59.7 6.1e-16 1 CL0028
Cotton_A_23257_CDS 107 211 105 219 PF01426.18 BAH Domain 4 112 122 28.5 1.1e-06 1 No_clan
Cotton_A_23257_CDS 292 366 292 368 PF05641.12 Agenet Domain 1 59 61 57.0 1.9e-15 1 CL0049
Cotton_A_31285_CDS 19 222 17 224 PF00141.23 peroxidase Domain 3 227 229 148.6 2.2e-43 1 CL0617
Cotton_A_12311_CDS 52 135 52 135 PF01777.18 Ribosomal_L27e Family 1 85 85 108.8 1.3e-31 1 No_clan
Cotton_A_22715_CDS 49 74 49 76 PF01535.20 PPR Family 4 29 31 10.3 0.67 1 CL0020
Cotton_A_22715_CDS 77 105 77 106 PF01535.20 PPR Family 1 29 31 22.0 0.00013 1 CL0020
Cotton_A_22715_CDS 107 152 105 153 PF13041.6 PPR_2 Repeat 3 48 50 52.7 3.5e-14 1 CL0020
Cotton_A_22715_CDS 179 206 178 208 PF01535.20 PPR Family 2 29 31 18.4 0.0019 1 CL0020
Cotton_A_22715_CDS 207 252 206 255 PF13041.6 PPR_2 Repeat 2 47 50 42.3 6.2e-11 1 CL0020
Cotton_A_22715_CDS 282 306 282 308 PF01535.20 PPR Family 4 28 31 11.5 0.28 1 CL0020
Cotton_A_22715_CDS 310 336 310 340 PF01535.20 PPR Family 1 27 31 25.3 1.2e-05 1 CL0020
Cotton_A_22715_CDS 383 406 383 409 PF01535.20 PPR Family 4 27 31 20.2 0.00048 1 CL0020
Cotton_A_22715_CDS 409 455 408 457 PF13041.6 PPR_2 Repeat 2 48 50 34.0 2.4e-08 1 CL0020
Cotton_A_22715_CDS 510 557 509 558 PF13041.6 PPR_2 Repeat 2 49 50 39.2 5.8e-10 1 CL0020
Cotton_A_22715_CDS 584 609 576 609 PF12854.7 PPR_1 Repeat 9 34 34 28.2 1.1e-06 1 CL0020
Cotton_A_22715_CDS 686 808 684 808 PF14432.6 DYW_deaminase Family 3 127 127 125.0 1.6e-36 1 CL0109
Cotton_A_30310_CDS 8 107 7 114 PF10280.9 Med11 Family 2 124 137 52.9 5.1e-14 1 No_clan
Cotton_A_06018_CDS 4 201 4 202 PF02431.15 Chalcone Domain 1 202 203 112.9 1.3e-32 1 CL0560
Cotton_A_28500_CDS 77 107 76 107 PF06200.14 tify Domain 4 34 34 36.0 3.1e-09 1 No_clan
Cotton_A_28500_CDS 141 183 141 184 PF06203.14 CCT Motif 1 43 44 51.2 9.2e-14 1 CL0281
Cotton_A_28500_CDS 212 248 212 249 PF00320.27 GATA Domain 1 35 36 50.4 1.2e-13 1 CL0167
Cotton_A_11757_CDS 580 697 579 698 PF14443.6 DBC1 Domain 2 124 125 128.7 1.2e-37 1 No_clan
Cotton_A_35664_CDS 115 144 115 144 PF17123.5 zf-RING_11 Domain 2 29 29 37.2 1.8e-09 1 CL0229
Cotton_A_35664_CDS 285 431 285 449 PF00092.28 VWA Domain 1 142 175 58.4 1e-15 1 CL0128
Cotton_A_07495_CDS 8 196 7 196 PF06552.12 TOM20_plant Family 2 187 187 261.7 3.4e-78 1 CL0020
Cotton_A_06906_CDS 43 499 41 510 PF00067.22 p450 Domain 3 451 463 287.8 1.5e-85 1 No_clan
Cotton_A_07462_CDS 174 324 173 340 PF00069.25 Pkinase Domain 2 149 264 126.9 8.7e-37 1 CL0016
Cotton_A_07462_CDS 407 510 395 510 PF00069.25 Pkinase Domain 154 264 264 74.6 7.9e-21 1 CL0016
Cotton_A_34199_CDS 36 138 21 139 PF07839.11 CaM_binding Domain 4 116 117 109.9 1.1e-31 1 No_clan
Cotton_A_41063_CDS 122 288 105 289 PF01061.24 ABC2_membrane Family 45 209 210 120.1 8.4e-35 1 CL0181
Cotton_A_13330_CDS 34 331 33 334 PF00657.22 Lipase_GDSL Family 2 197 200 27.8 2.2e-06 1 CL0264
Cotton_A_02308_CDS 20 259 20 259 PF13561.6 adh_short_C2 Domain 1 234 234 218.3 1.1e-64 1 CL0063
Cotton_A_18512_CDS 14 63 2 95 PF05755.12 REF Family 75 124 206 33.3 4.2e-08 1 No_clan
Cotton_A_18512_CDS 110 202 100 202 PF00861.22 Ribosomal_L18p Family 27 116 116 59.9 2.9e-16 1 CL0267
Cotton_A_20813_CDS 61 156 60 157 PF03168.13 LEA_2 Domain 2 100 101 36.2 6.5e-09 1 CL0159
Cotton_A_24262_CDS 47 493 47 508 PF00067.22 p450 Domain 1 449 463 330.4 1.6e-98 1 No_clan
Cotton_A_03154_CDS 24 60 22 60 PF13713.6 BRX_N Domain 3 37 37 49.9 2e-13 1 No_clan
Cotton_A_03154_CDS 139 205 138 205 PF08381.11 BRX Domain 2 56 56 68.6 2.1e-19 1 No_clan
Cotton_A_37578_CDS 2 86 1 87 PF00450.22 Peptidase_S10 Domain 329 418 419 76.7 2.3e-21 1 CL0028
Cotton_A_19369_CDS 62 125 61 125 PF00226.31 DnaJ Domain 2 63 63 75.4 2.8e-21 1 CL0392
Cotton_A_10752_CDS 24 248 24 248 PF05216.13 UNC-50 Family 1 221 221 264.5 7e-79 1 No_clan
Cotton_A_24259_CDS 27 196 27 198 PF16974.5 NAR2 Family 1 172 174 265.5 1.4e-79 1 No_clan
Cotton_A_28979_CDS 61 432 60 443 PF00180.20 Iso_dh Domain 2 333 348 282.0 6.9e-84 1 CL0270
Cotton_A_05316_CDS 90 152 32 152 PF14510.6 ABC_trans_N Domain 30 81 81 39.3 7.6e-10 1 No_clan
Cotton_A_05316_CDS 177 359 177 361 PF00005.27 ABC_tran Domain 1 135 137 57.3 2.3e-15 1 CL0023
Cotton_A_05316_CDS 513 725 512 725 PF01061.24 ABC2_membrane Family 2 210 210 160.5 3.7e-47 1 CL0181
Cotton_A_05316_CDS 730 793 730 793 PF08370.11 PDR_assoc Family 1 65 65 90.7 3.5e-26 1 No_clan
Cotton_A_05316_CDS 896 1048 896 1048 PF00005.27 ABC_tran Domain 1 137 137 70.2 2.4e-19 1 CL0023
Cotton_A_05316_CDS 1193 1407 1193 1407 PF01061.24 ABC2_membrane Family 1 210 210 198.3 9.9e-59 1 CL0181
Cotton_A_17316_CDS 417 741 375 786 PF00176.23 SNF2_N Family 28 307 350 83.1 1.5e-23 1 CL0023
Cotton_A_17316_CDS 795 912 793 912 PF00271.31 Helicase_C Family 3 111 111 52.6 4.9e-14 1 CL0023
Cotton_A_35930_CDS 106 327 106 327 PF07816.11 DUF1645 Family 1 191 191 149.1 2.1e-43 1 No_clan
Cotton_A_16479_CDS 43 184 42 184 PF04043.15 PMEI Domain 3 154 154 46.8 3.8e-12 1 No_clan
Cotton_A_21319_CDS 79 393 79 393 PF05623.12 DUF789 Family 1 294 294 345.3 3.5e-103 1 No_clan
Cotton_A_21149_CDS 65 86 64 86 PF00560.33 LRR_1 Repeat 2 23 23 11.0 0.54 1 CL0022
Cotton_A_21149_CDS 89 146 89 147 PF13855.6 LRR_8 Repeat 3 60 61 35.4 6.6e-09 1 CL0022
Cotton_A_21149_CDS 179 192 178 193 PF13516.6 LRR_6 Repeat 3 16 24 8.9 1.7 1 CL0022
Cotton_A_19455_CDS 161 504 159 504 PF01545.21 Cation_efflux Family 3 199 199 127.4 5.8e-37 1 No_clan
Cotton_A_22124_CDS 116 140 116 140 PF00096.26 zf-C2H2 Domain 1 23 23 16.2 0.011 1 CL0361
Cotton_A_27740_CDS 7 28 6 28 PF00560.33 LRR_1 Repeat 2 23 23 14.5 0.039 1 CL0022
Cotton_A_27740_CDS 31 50 30 52 PF00560.33 LRR_1 Repeat 2 21 23 10.7 0.66 1 CL0022
Cotton_A_22967_CDS 85 127 69 128 PF00255.19 GSHPx Family 42 84 108 39.0 4.6e-10 1 CL0172
Cotton_A_23989_CDS 14 111 14 113 PF03195.14 LOB Family 1 97 99 125.0 1.4e-36 1 No_clan
Cotton_A_20844_CDS 42 228 31 228 PF05634.11 APO_RNA-bind Family 13 200 200 210.6 1.4e-62 1 No_clan
Cotton_A_20844_CDS 269 384 259 396 PF05634.11 APO_RNA-bind Family 67 181 200 80.9 7.5e-23 1 No_clan
Cotton_A_33777_CDS 25 93 25 95 PF00076.22 RRM_1 Domain 1 68 70 46.4 2.6e-12 1 CL0221
Cotton_A_33777_CDS 118 182 118 189 PF00076.22 RRM_1 Domain 1 63 70 57.4 9.6e-16 1 CL0221
Cotton_A_33777_CDS 237 300 237 301 PF00076.22 RRM_1 Domain 1 69 70 58.6 3.8e-16 1 CL0221
Cotton_A_28811_CDS 31 88 30 89 PF02788.16 RuBisCO_large_N Domain 2 59 120 60.0 2.4e-16 1 No_clan
Cotton_A_19745_CDS 22 136 21 137 PF01426.18 BAH Domain 2 121 122 83.4 1.1e-23 1 No_clan
Cotton_A_19745_CDS 141 189 141 190 PF00628.29 PHD Domain 1 51 52 38.3 8.8e-10 1 CL0390
Cotton_A_31362_CDS 6 107 5 113 PF00168.30 C2 Domain 2 97 103 65.0 6.3e-18 1 CL0154
Cotton_A_31362_CDS 312 409 311 411 PF00168.30 C2 Domain 2 101 103 18.5 0.0018 1 CL0154
Cotton_A_31362_CDS 461 566 461 566 PF00168.30 C2 Domain 1 103 103 40.3 3e-10 1 CL0154
Cotton_A_31362_CDS 616 729 616 729 PF00168.30 C2 Domain 1 103 103 78.7 3.4e-22 1 CL0154
Cotton_A_31362_CDS 875 1031 875 1031 PF08372.10 PRT_C Family 1 156 156 226.0 1.7e-67 1 CL0484
Cotton_A_30021_CDS 32 184 32 187 PF02453.17 Reticulon Family 1 153 157 161.7 1.3e-47 1 CL0484
Cotton_A_21252_CDS 22 74 22 89 PF01176.19 eIF-1a Domain 1 54 64 36.6 3e-09 1 CL0021
Cotton_A_20154_CDS 167 969 166 969 PF00311.17 PEPcase Family 2 795 795 999.6 9.8e-301 1 CL0151
Cotton_A_19151_CDS 36 499 35 504 PF00067.22 p450 Domain 1 457 463 317.8 1.2e-94 1 No_clan
Cotton_A_03466_CDS 66 266 66 267 PF00697.22 PRAI Domain 1 193 194 137.5 4.6e-40 1 CL0036
Cotton_A_27110_CDS 24 509 22 511 PF00083.24 Sugar_tr Family 3 449 452 159.1 1.7e-46 1 CL0015
Cotton_A_16541_CDS 92 127 89 127 PF13917.6 zf-CCHC_3 Domain 4 41 41 71.5 3.9e-20 1 CL0511
Cotton_A_09558_CDS 216 232 216 238 PF02493.20 MORN Repeat 1 17 23 13.5 0.051 1 CL0251
Cotton_A_09558_CDS 240 254 240 255 PF02493.20 MORN Repeat 1 15 23 13.5 0.051 1 CL0251
Cotton_A_09558_CDS 334 349 334 350 PF02493.20 MORN Repeat 1 16 23 18.9 0.00096 1 CL0251
Cotton_A_37228_CDS 5 136 1 142 PF00656.22 Peptidase_C14 Domain 101 186 248 22.7 8e-05 1 CL0093
Cotton_A_16718_CDS 1 40 1 40 PF05758.12 Ycf1 Family 30 69 945 73.3 1.1e-20 1 No_clan
Cotton_A_16718_CDS 38 107 37 107 PF05758.12 Ycf1 Family 217 288 945 68.5 3e-19 1 No_clan
Cotton_A_27340_CDS 98 379 98 380 PF04674.12 Phi_1 Family 1 275 276 344.4 4.3e-103 1 No_clan
Cotton_A_36648_CDS 143 209 143 210 PF12537.8 GPHR_N Family 1 67 68 77.6 5.5e-22 1 No_clan
Cotton_A_36648_CDS 286 456 285 458 PF12430.8 ABA_GPCR Family 2 178 180 133.1 8.8e-39 1 No_clan
Cotton_A_08167_CDS 63 218 62 218 PF02453.17 Reticulon Family 2 157 157 182.4 5.5e-54 1 CL0484
Cotton_A_20078_CDS 31 341 30 342 PF00657.22 Lipase_GDSL Family 2 199 200 54.8 1.2e-14 1 CL0264
Cotton_A_29247_CDS 4 101 1 101 PF00931.22 NB-ARC Domain 151 252 252 77.1 1.2e-21 1 CL0023
Cotton_A_29247_CDS 240 299 240 300 PF13855.6 LRR_8 Repeat 1 60 61 50.4 1.3e-13 1 CL0022
Cotton_A_05393_CDS 54 104 54 105 PF00847.20 AP2 Domain 1 53 54 47.7 1.3e-12 1 CL0081
Cotton_A_08423_CDS 47 132 32 133 PF05705.14 DUF829 Domain 125 198 241 29.2 7.8e-07 1 CL0028
Cotton_A_31576_CDS 81 450 81 450 PF03372.23 Exo_endo_phos Domain 1 233 233 71.9 5.6e-20 1 CL0530
Cotton_A_17930_CDS 33 95 31 105 PF00232.18 Glyco_hydro_1 Domain 3 65 453 75.4 3e-21 1 CL0058
Cotton_A_15842_CDS 2 199 1 200 PF00697.22 PRAI Domain 4 193 194 140.2 6.8e-41 1 CL0036
Cotton_A_38738_CDS 2 126 1 129 PF01490.18 Aa_trans Family 23 142 409 51.5 6.4e-14 1 CL0062
Cotton_A_04055_CDS 54 103 52 113 PF00170.21 bZIP_1 Family 5 54 64 37.4 2e-09 1 CL0018
Cotton_A_16615_CDS 42 194 41 194 PF04043.15 PMEI Domain 2 154 154 115.0 3.9e-33 1 No_clan
Cotton_A_38718_CDS 322 389 321 396 PF07524.13 Bromo_TP Domain 2 69 77 28.3 1.3e-06 1 CL0012
Cotton_A_30917_CDS 22 271 21 273 PF00139.19 Lectin_legB Domain 3 247 249 248.9 5.1e-74 1 CL0004
Cotton_A_30917_CDS 340 607 340 610 PF00069.25 Pkinase Domain 1 259 264 162.1 1.5e-47 1 CL0016
Cotton_A_37132_CDS 49 163 49 184 PF00561.20 Abhydrolase_1 Domain 1 119 257 60.4 2.1e-16 1 CL0028
Cotton_A_37132_CDS 229 284 194 284 PF00561.20 Abhydrolase_1 Domain 206 257 257 26.6 4.2e-06 1 CL0028
Cotton_A_08502_CDS 32 115 32 116 PF08700.11 Vps51 Family 1 85 87 50.2 2.1e-13 1 CL0295
Cotton_A_08502_CDS 150 358 149 360 PF16528.5 Exo84_C Domain 2 203 205 60.1 2.5e-16 1 CL0295
Cotton_A_12427_CDS 606 679 605 679 PF16135.5 Jas Family 2 76 76 82.6 1.6e-23 1 No_clan
Cotton_A_12427_CDS 720 762 719 762 PF00628.29 PHD Domain 2 52 52 30.9 1.9e-07 1 CL0390
Cotton_A_32822_CDS 484 715 474 717 PF07714.17 Pkinase_Tyr Domain 28 257 259 63.3 2e-17 1 CL0016
Cotton_A_37537_CDS 83 147 46 147 PF14510.6 ABC_trans_N Domain 30 81 81 35.8 9.4e-09 1 No_clan
Cotton_A_37537_CDS 172 356 172 358 PF00005.27 ABC_tran Domain 1 135 137 63.6 2.6e-17 1 CL0023
Cotton_A_37537_CDS 511 722 509 722 PF01061.24 ABC2_membrane Family 3 210 210 127.5 4.5e-37 1 CL0181
Cotton_A_37537_CDS 727 764 727 766 PF08370.11 PDR_assoc Family 1 39 65 34.9 9.5e-09 1 No_clan
Cotton_A_37537_CDS 842 994 842 994 PF00005.27 ABC_tran Domain 1 137 137 74.6 1e-20 1 CL0023
Cotton_A_37537_CDS 1140 1355 1139 1356 PF01061.24 ABC2_membrane Family 2 209 210 185.4 8.4e-55 1 CL0181
Cotton_A_00885_CDS 12 70 3 70 PF03946.14 Ribosomal_L11_N Domain 7 65 65 75.6 2e-21 1 No_clan
Cotton_A_00885_CDS 75 144 74 144 PF00298.19 Ribosomal_L11 Domain 2 70 70 68.6 5.1e-19 1 No_clan
Cotton_A_23074_CDS 33 282 32 287 PF00083.24 Sugar_tr Family 2 263 452 222.1 1.3e-65 1 CL0015
Cotton_A_19264_CDS 4 63 4 103 PF05631.14 MFS_5 Family 1 60 354 52.2 4.2e-14 1 CL0015
Cotton_A_19264_CDS 102 417 71 417 PF05631.14 MFS_5 Family 40 354 354 564.9 5.5e-170 1 CL0015
Cotton_A_26612_CDS 29 121 29 124 PF17172.4 GST_N_4 Domain 1 96 99 61.2 1.2e-16 1 CL0172
Cotton_A_26612_CDS 173 235 173 236 PF17171.4 GST_C_6 Domain 1 63 64 60.1 1.3e-16 1 CL0497
Cotton_A_12393_CDS 42 76 42 76 PF10559.9 Plug_translocon Domain 1 35 35 65.7 2.4e-18 1 No_clan
Cotton_A_07083_CDS 118 231 118 231 PF03479.15 DUF296 Domain 1 107 107 100.0 9.2e-29 1 CL0615
Cotton_A_09578_CDS 163 211 163 212 PF13041.6 PPR_2 Repeat 1 49 50 44.1 1.7e-11 1 CL0020
Cotton_A_09578_CDS 239 263 236 265 PF01535.20 PPR Family 4 28 31 14.9 0.023 1 CL0020
Cotton_A_09578_CDS 267 297 267 297 PF01535.20 PPR Family 1 31 31 21.3 0.00022 1 CL0020
Cotton_A_09578_CDS 340 364 339 366 PF01535.20 PPR Family 4 28 31 11.4 0.3 1 CL0020
Cotton_A_09578_CDS 367 412 366 412 PF13041.6 PPR_2 Repeat 2 47 50 52.0 6e-14 1 CL0020
Cotton_A_09578_CDS 464 511 463 512 PF13041.6 PPR_2 Repeat 2 49 50 47.5 1.5e-12 1 CL0020
Cotton_A_09578_CDS 539 561 537 565 PF01535.20 PPR Family 3 25 31 12.7 0.12 1 CL0020
Cotton_A_09578_CDS 566 613 565 614 PF13041.6 PPR_2 Repeat 2 49 50 45.1 8.6e-12 1 CL0020
Cotton_A_09578_CDS 641 664 640 665 PF01535.20 PPR Family 3 26 31 19.8 0.00064 1 CL0020
Cotton_A_09578_CDS 740 863 739 863 PF14432.6 DYW_deaminase Family 2 127 127 144.1 2e-42 1 CL0109
Cotton_A_00847_CDS 111 291 110 291 PF03924.13 CHASE Domain 2 188 188 133.4 8.7e-39 1 CL0165
Cotton_A_00847_CDS 381 446 381 446 PF00512.25 HisKA Domain 1 67 67 60.4 1.3e-16 1 CL0025
Cotton_A_00847_CDS 493 673 493 677 PF02518.26 HATPase_c Domain 1 107 112 109.7 1.1e-31 1 CL0025
Cotton_A_00847_CDS 861 991 861 992 PF00072.24 Response_reg Domain 1 111 112 72.5 2.8e-20 1 CL0304
Cotton_A_10255_CDS 114 160 114 161 PF13418.6 Kelch_4 Repeat 1 48 49 31.2 1.6e-07 1 CL0186
Cotton_A_10255_CDS 166 212 164 212 PF01344.25 Kelch_1 Repeat 3 46 46 24.9 1.1e-05 1 CL0186
Cotton_A_10255_CDS 271 329 269 329 PF01344.25 Kelch_1 Repeat 4 46 46 22.1 8.1e-05 1 CL0186
Cotton_A_25100_CDS 73 127 73 127 PF13370.6 Fer4_13 Domain 1 58 58 66.1 2.9e-18 1 CL0344
Cotton_A_25100_CDS 167 323 164 323 PF00753.27 Lactamase_B Domain 7 197 197 26.6 5.2e-06 1 CL0381
Cotton_A_10266_CDS 77 766 76 775 PF03030.16 H_PPase Family 2 623 650 825.9 2.6e-248 1 No_clan
Cotton_A_37287_CDS 2 55 1 55 PF17181.4 EPF Family 21 53 53 34.2 1.8e-08 1 No_clan
Cotton_A_23415_CDS 8 480 7 481 PF03094.15 Mlo Family 2 478 479 771.5 2.5e-232 1 No_clan
Cotton_A_29273_CDS 30 62 29 64 PF14416.6 PMR5N Domain 2 33 53 43.7 2.6e-11 1 No_clan
Cotton_A_11268_CDS 89 139 88 139 PF00249.31 Myb_DNA-binding Domain 2 46 46 29.5 6.1e-07 1 CL0123
Cotton_A_29282_CDS 10 148 1 153 PF00931.22 NB-ARC Domain 92 232 252 103.6 9.4e-30 1 CL0023
Cotton_A_25960_CDS 112 215 103 245 PF01433.20 Peptidase_M1 Domain 10 115 218 81.5 6.4e-23 1 CL0126
Cotton_A_25960_CDS 230 324 219 324 PF11940.8 DUF3458 Domain 21 95 95 64.7 8.1e-18 1 CL0159
Cotton_A_18754_CDS 62 117 62 117 PF16450.5 Prot_ATP_ID_OB Domain 1 57 57 38.6 7.8e-10 1 CL0021
Cotton_A_18754_CDS 175 308 175 308 PF00004.29 AAA Domain 1 132 132 143.7 4.3e-42 1 CL0023
Cotton_A_18754_CDS 331 373 330 374 PF17862.1 AAA_lid_3 Domain 2 44 45 38.0 1.1e-09 1 CL0671
Cotton_A_22585_CDS 1 50 1 65 PF00931.22 NB-ARC Domain 183 231 252 36.3 3.3e-09 1 CL0023
Cotton_A_11314_CDS 69 327 67 328 PF07714.17 Pkinase_Tyr Domain 3 258 259 95.7 2.7e-27 1 CL0016
Cotton_A_29692_CDS 60 160 4 160 PF00257.19 Dehydrin Family 67 164 164 55.4 1.1e-14 1 No_clan
Cotton_A_29692_CDS 145 201 143 201 PF00257.19 Dehydrin Family 104 164 164 56.2 5.9e-15 1 No_clan
Cotton_A_05389_CDS 93 237 93 272 PF12697.7 Abhydrolase_6 Domain 1 135 220 47.7 2.8e-12 1 CL0028
Cotton_A_27640_CDS 16 364 16 365 PF12819.7 Malectin_like Domain 1 335 336 111.6 4.2e-32 1 CL0202
Cotton_A_27640_CDS 472 739 469 739 PF07714.17 Pkinase_Tyr Domain 6 259 259 167.8 2.7e-49 1 CL0016
Cotton_A_12213_CDS 177 314 177 315 PF08646.10 Rep_fac-A_C Family 1 145 146 108.3 2.7e-31 1 CL0021
Cotton_A_40228_CDS 80 139 79 139 PF00046.29 Homeodomain Domain 3 57 57 67.8 5.5e-19 1 CL0123
Cotton_A_18477_CDS 100 480 100 480 PF03514.14 GRAS Family 1 374 374 347.3 9.4e-104 1 CL0063
Cotton_A_22687_CDS 8 122 7 123 PF07732.15 Cu-oxidase_3 Domain 2 118 119 126.3 5.8e-37 1 CL0026
Cotton_A_22687_CDS 134 288 133 289 PF00394.22 Cu-oxidase Domain 2 158 159 134.8 2.8e-39 1 CL0026
Cotton_A_22687_CDS 396 531 395 533 PF07731.14 Cu-oxidase_2 Domain 2 135 137 130.2 4.1e-38 1 CL0026
Cotton_A_37547_CDS 58 220 35 252 PF00704.28 Glyco_hydro_18 Domain 24 184 312 57.9 1.4e-15 1 CL0058
Cotton_A_12666_CDS 12 25 9 26 PF13202.6 EF-hand_5 Domain 4 17 25 15.9 0.0066 1 CL0220
Cotton_A_12666_CDS 370 441 369 459 PF12763.7 EF-hand_4 Family 2 72 104 42.7 4.1e-11 1 CL0220
Cotton_A_12222_CDS 8 88 1 88 PF04185.14 Phosphoesterase Family 51 121 356 42.6 4.3e-11 1 CL0088
Cotton_A_26531_CDS 30 69 29 69 PF08263.12 LRRNT_2 Family 2 41 41 26.7 4.9e-06 1 No_clan
Cotton_A_26531_CDS 268 327 267 327 PF13855.6 LRR_8 Repeat 2 61 61 27.6 1.8e-06 1 CL0022
Cotton_A_34312_CDS 200 224 199 225 PF01535.20 PPR Family 5 29 31 13.2 0.08 1 CL0020
Cotton_A_34312_CDS 228 253 227 255 PF01535.20 PPR Family 2 27 31 12.0 0.19 1 CL0020
Cotton_A_34312_CDS 300 326 298 327 PF01535.20 PPR Family 4 30 31 19.8 0.00065 1 CL0020
Cotton_A_34312_CDS 349 398 348 408 PF13812.6 PPR_3 Repeat 2 51 63 30.7 2.5e-07 1 CL0020
Cotton_A_34312_CDS 435 461 433 463 PF01535.20 PPR Family 3 29 31 16.2 0.0092 1 CL0020
Cotton_A_34312_CDS 463 501 462 501 PF13041.6 PPR_2 Repeat 2 40 50 37.3 2.2e-09 1 CL0020
Cotton_A_34312_CDS 532 579 532 580 PF13041.6 PPR_2 Repeat 1 48 50 40.6 2.2e-10 1 CL0020
Cotton_A_34312_CDS 608 632 605 635 PF01535.20 PPR Family 4 28 31 20.7 0.00032 1 CL0020
Cotton_A_34312_CDS 636 680 633 682 PF13041.6 PPR_2 Repeat 4 48 50 31.2 1.9e-07 1 CL0020
Cotton_A_34312_CDS 708 732 707 735 PF01535.20 PPR Family 2 26 31 15.2 0.018 1 CL0020
Cotton_A_34312_CDS 810 929 807 930 PF14432.6 DYW_deaminase Family 4 126 127 112.2 1.5e-32 1 CL0109
Cotton_A_15507_CDS 602 663 596 675 PF00128.24 Alpha-amylase Domain 17 79 337 35.3 9.1e-09 1 CL0058
Cotton_A_15507_CDS 708 881 701 892 PF00128.24 Alpha-amylase Domain 141 325 337 23.8 3e-05 1 CL0058
Cotton_A_15507_CDS 902 963 902 964 PF07821.12 Alpha-amyl_C2 Domain 1 57 58 59.3 3.2e-16 1 CL0369
Cotton_A_14619_CDS 11 65 2 73 PF10200.9 Ndufs5 Family 30 87 96 25.9 8.7e-06 1 CL0351
Cotton_A_11454_CDS 6 53 5 56 PF00847.20 AP2 Domain 2 51 54 46.2 3.9e-12 1 CL0081
Cotton_A_32485_CDS 54 171 54 172 PF13537.6 GATase_7 Domain 1 122 123 134.0 2.4e-39 1 CL0052
Cotton_A_32485_CDS 216 366 215 369 PF00733.21 Asn_synthase Domain 2 143 355 195.4 2.2e-57 1 CL0039
Cotton_A_21816_CDS 1 158 1 158 PF00407.19 Bet_v_1 Domain 1 151 151 77.9 7.4e-22 1 CL0209
Cotton_A_21332_CDS 6 102 6 102 PF09177.11 Syntaxin-6_N Domain 1 99 99 69.8 2.3e-19 1 No_clan
Cotton_A_21332_CDS 194 245 193 245 PF05739.19 SNARE Family 2 53 53 36.3 4.2e-09 1 No_clan
Cotton_A_03371_CDS 68 247 66 248 PF17047.5 SMP_LBD Domain 3 179 180 66.9 1.5e-18 1 CL0648
Cotton_A_03371_CDS 263 360 263 364 PF00168.30 C2 Domain 1 99 103 83.5 1.1e-23 1 CL0154
Cotton_A_13617_CDS 21 55 20 58 PF00646.33 F-box Domain 8 42 48 27.1 2.7e-06 1 CL0271
Cotton_A_20958_CDS 65 355 63 355 PF01504.18 PIP5K Family 3 274 274 233.3 3e-69 1 CL0016
Cotton_A_20745_CDS 14 98 12 101 PF14368.6 LTP_2 Family 3 91 97 32.6 6.6e-08 1 CL0482
Cotton_A_29815_CDS 98 239 93 244 PF06574.12 FAD_syn Family 7 151 158 51.4 1.1e-13 1 CL0039
Cotton_A_02120_CDS 64 206 41 206 PF16166.5 TIC20 Family 36 181 181 180.8 2.1e-53 1 No_clan
Cotton_A_12478_CDS 41 280 40 280 PF00141.23 peroxidase Domain 2 229 229 260.9 1e-77 1 CL0617
Cotton_A_15447_CDS 128 179 128 179 PF00010.26 HLH Domain 1 53 53 40.6 1.8e-10 1 No_clan
Cotton_A_20786_CDS 24 130 23 130 PF04398.12 DUF538 Family 2 112 112 87.1 1e-24 1 No_clan
Cotton_A_39435_CDS 79 194 78 194 PF09585.10 Lin0512_fam Family 2 114 114 134.9 1.2e-39 1 No_clan
Cotton_A_21986_CDS 117 164 116 166 PF13920.6 zf-C3HC4_3 Domain 2 48 50 45.6 4.6e-12 1 CL0229
Cotton_A_11303_CDS 44 348 44 351 PF00657.22 Lipase_GDSL Family 1 197 200 71.2 1.1e-19 1 CL0264
Cotton_A_09187_CDS 34 204 33 204 PF03637.17 Mob1_phocein Family 2 169 169 275.1 2.2e-82 1 No_clan
Cotton_A_24978_CDS 3 30 3 31 PF11722.8 zf-TRM13_CCCH Domain 1 28 29 42.7 3.4e-11 1 No_clan
Cotton_A_24978_CDS 38 62 38 62 PF05253.12 zf-U11-48K Domain 1 25 25 28.7 8.5e-07 1 CL0361
Cotton_A_24978_CDS 170 448 169 449 PF05206.14 TRM13 Family 2 261 262 296.9 1.4e-88 1 CL0063
Cotton_A_00958_CDS 7 117 7 119 PF16884.5 ADH_N_2 Family 1 106 108 92.3 1.6e-26 1 CL0296
Cotton_A_00958_CDS 165 299 165 300 PF00107.26 ADH_zinc_N Family 1 129 130 82.6 2.4e-23 1 CL0063
Cotton_A_22712_CDS 293 335 289 336 PF00010.26 HLH Domain 7 52 53 37.3 1.9e-09 1 No_clan
Cotton_A_34867_CDS 32 106 24 107 PF08240.12 ADH_N Domain 42 108 109 39.9 3e-10 1 CL0296
Cotton_A_34867_CDS 149 272 149 273 PF00107.26 ADH_zinc_N Family 1 129 130 65.5 4.5e-18 1 CL0063
Cotton_A_20382_CDS 26 83 23 83 PF13855.6 LRR_8 Repeat 4 61 61 30.2 2.7e-07 1 CL0022
Cotton_A_20382_CDS 93 108 93 110 PF13516.6 LRR_6 Repeat 1 16 24 10.6 0.48 1 CL0022
Cotton_A_31995_CDS 29 285 27 285 PF00704.28 Glyco_hydro_18 Domain 3 312 312 104.7 7.5e-30 1 CL0058
Cotton_A_31089_CDS 114 206 111 219 PF02338.19 OTU Family 9 110 127 40.2 4.1e-10 1 CL0125
Cotton_A_31089_CDS 374 391 374 392 PF02810.15 SEC-C Family 1 18 19 28.4 1.1e-06 1 No_clan
Cotton_A_26236_CDS 13 106 9 108 PF00153.27 Mito_carr Family 5 95 97 83.4 8.1e-24 1 No_clan
Cotton_A_26236_CDS 112 204 111 206 PF00153.27 Mito_carr Family 2 95 97 82.4 1.7e-23 1 No_clan
Cotton_A_26236_CDS 219 304 212 306 PF00153.27 Mito_carr Family 9 95 97 81.0 4.5e-23 1 No_clan
Cotton_A_00637_CDS 192 388 109 389 PF05278.12 PEARLI-4 Family 72 268 269 231.7 1.2e-68 1 No_clan
Cotton_A_07709_CDS 1 37 1 48 PF03105.19 SPX Domain 1 34 384 33.9 3.3e-08 1 No_clan
Cotton_A_07709_CDS 101 159 93 160 PF03105.19 SPX Domain 325 383 384 39.5 6.4e-10 1 No_clan
Cotton_A_37556_CDS 14 94 14 94 PF10273.9 WGG Family 1 80 80 67.7 1.1e-18 1 No_clan
Cotton_A_30113_CDS 68 309 67 310 PF04414.12 tRNA_deacylase Family 2 204 205 224.9 7.1e-67 1 CL0408
Cotton_A_08270_CDS 8 116 2 116 PF01487.15 DHquinase_I Domain 114 229 229 77.1 2.4e-21 1 CL0036
Cotton_A_08270_CDS 130 210 130 210 PF08501.11 Shikimate_dh_N Domain 1 83 83 69.4 2.4e-19 1 CL0603
Cotton_A_08270_CDS 266 322 259 327 PF01488.20 Shikimate_DH Family 10 67 138 29.3 7.2e-07 1 CL0063
Cotton_A_07173_CDS 149 219 95 239 PF00504.21 Chloroa_b-bind Family 24 102 161 22.7 0.00012 1 No_clan
Cotton_A_15451_CDS 2 74 1 75 PF04674.12 Phi_1 Family 60 135 276 59.0 4.3e-16 1 No_clan
Cotton_A_15451_CDS 74 191 72 191 PF04674.12 Phi_1 Family 159 276 276 191.5 1.7e-56 1 No_clan
Cotton_A_19920_CDS 179 198 179 201 PF00560.33 LRR_1 Repeat 1 20 23 16.3 0.0098 1 CL0022
Cotton_A_19920_CDS 388 645 383 647 PF07714.17 Pkinase_Tyr Domain 6 257 259 88.4 4.4e-25 1 CL0016
Cotton_A_34263_CDS 6 73 1 87 PF01397.21 Terpene_synth Domain 49 118 192 71.2 8.6e-20 1 No_clan
Cotton_A_34263_CDS 94 141 82 142 PF03936.16 Terpene_synth_C Domain 20 67 267 54.9 8.2e-15 1 CL0613
Cotton_A_32183_CDS 114 151 112 151 PF00400.32 WD40 Repeat 3 38 38 18.2 0.0035 1 CL0186
Cotton_A_32183_CDS 566 688 566 766 PF12931.7 Sec16_C Domain 1 148 302 24.1 2.6e-05 1 No_clan
Cotton_A_03352_CDS 110 199 100 200 PF08241.12 Methyltransf_11 Domain 11 95 96 43.8 3.1e-11 1 CL0063
Cotton_A_04892_CDS 66 138 63 144 PF01541.24 GIY-YIG Domain 4 72 78 45.6 6.1e-12 1 CL0418
Cotton_A_08391_CDS 4 72 4 72 PF16205.5 Ribosomal_S17_N Family 1 69 69 106.8 5.4e-31 1 No_clan
Cotton_A_08391_CDS 74 142 74 142 PF00366.20 Ribosomal_S17 Domain 1 68 68 88.2 2.8e-25 1 CL0021
Cotton_A_09161_CDS 39 158 39 159 PF01597.19 GCV_H Domain 1 121 122 162.9 2.7e-48 1 CL0105
Cotton_A_04523_CDS 35 138 33 141 PF07732.15 Cu-oxidase_3 Domain 3 116 119 82.2 2.7e-23 1 CL0026
Cotton_A_04523_CDS 153 289 151 292 PF00394.22 Cu-oxidase Domain 3 157 159 83.1 2.2e-23 1 CL0026
Cotton_A_31948_CDS 2 42 1 45 PF00643.24 zf-B_box Domain 4 39 42 24.1 3e-05 1 No_clan
Cotton_A_33992_CDS 166 296 166 297 PF00782.20 DSPc Domain 1 132 133 89.5 1.6e-25 1 CL0031
Cotton_A_04524_CDS 408 459 402 460 PF01504.18 PIP5K Family 224 273 274 34.0 1.8e-08 1 CL0016
Cotton_A_21820_CDS 239 299 199 323 PF00150.18 Cellulase Domain 115 181 281 23.7 2.9e-05 1 CL0058
Cotton_A_31482_CDS 94 238 93 238 PF00210.24 Ferritin Domain 2 142 142 107.8 4.1e-31 1 CL0044
Cotton_A_29454_CDS 81 122 80 123 PF03107.16 C1_2 Domain 2 46 47 35.8 7.1e-09 1 CL0006
Cotton_A_27165_CDS 1 183 1 183 PF05603.12 DUF775 Family 1 199 199 90.0 1.4e-25 1 No_clan
Cotton_A_00409_CDS 20 97 6 99 PF00125.24 Histone Domain 51 129 131 48.4 1.1e-12 1 CL0012
Cotton_A_00409_CDS 100 133 100 134 PF16211.5 Histone_H2A_C Family 1 34 35 58.7 3.3e-16 1 No_clan
Cotton_A_21923_CDS 117 187 117 187 PF00076.22 RRM_1 Domain 1 70 70 59.5 2e-16 1 CL0221
Cotton_A_33050_CDS 55 199 25 201 PF04851.15 ResIII Family 24 169 171 66.0 3.9e-18 1 CL0023
Cotton_A_33050_CDS 403 469 375 470 PF00271.31 Helicase_C Family 43 110 111 62.2 5.3e-17 1 CL0023
Cotton_A_06745_CDS 17 79 17 80 PF17807.1 zf-UBP_var Domain 1 63 64 79.2 1.4e-22 1 CL0229
Cotton_A_06745_CDS 185 258 185 260 PF02148.19 zf-UBP Domain 1 62 64 54.8 8.7e-15 1 CL0229
Cotton_A_06745_CDS 313 807 313 807 PF00443.29 UCH Family 1 257 257 138.4 2.9e-40 1 CL0125
Cotton_A_06745_CDS 623 659 622 659 PF00627.31 UBA Domain 2 37 37 22.8 6.2e-05 1 CL0214
Cotton_A_06745_CDS 683 719 683 719 PF00627.31 UBA Domain 1 37 37 35.2 8e-09 1 CL0214
Cotton_A_09774_CDS 9 119 7 133 PF00025.21 Arf Domain 3 113 175 105.2 2.6e-30 1 CL0023
Cotton_A_02205_CDS 236 482 236 490 PF04646.12 DUF604 Family 1 249 256 373.0 7e-112 1 CL0110
Cotton_A_25131_CDS 9 63 9 68 PF00076.22 RRM_1 Domain 1 57 70 54.5 7.8e-15 1 CL0221
Cotton_A_16426_CDS 136 192 136 192 PF11961.8 DUF3475 Family 1 57 57 81.4 3.7e-23 1 No_clan
Cotton_A_16426_CDS 355 439 354 439 PF05003.12 DUF668 Family 2 89 89 102.7 1.1e-29 1 No_clan
Cotton_A_32216_CDS 12 299 7 299 PF03151.16 TPT Family 6 290 290 163.9 4.9e-48 1 CL0184
Cotton_A_21555_CDS 10 119 8 119 PF15341.6 SLX9 Family 3 131 131 40.0 4.6e-10 1 No_clan
Cotton_A_12348_CDS 30 187 30 187 PF04862.12 DUF642 Domain 1 157 157 196.0 3.2e-58 1 CL0202
Cotton_A_12348_CDS 222 365 198 366 PF04862.12 DUF642 Domain 19 156 157 66.8 1.8e-18 1 CL0202
Cotton_A_16483_CDS 100 168 98 168 PF00690.26 Cation_ATPase_N Domain 3 69 69 42.4 4e-11 1 No_clan
Cotton_A_16483_CDS 221 422 217 424 PF00122.20 E1-E2_ATPase Family 6 179 181 141.0 2.8e-41 1 No_clan
Cotton_A_16483_CDS 441 763 440 763 PF00702.26 Hydrolase Domain 2 210 210 65.7 7.1e-18 1 CL0137
Cotton_A_16483_CDS 834 1003 833 1004 PF00689.21 Cation_ATPase_C Family 2 181 182 162.8 6.9e-48 1 No_clan
Cotton_A_14364_CDS 140 237 132 239 PF00651.31 BTB Domain 11 108 111 54.6 1.1e-14 1 CL0033
Cotton_A_14364_CDS 263 355 257 357 PF07707.15 BACK Domain 14 101 103 40.4 2.5e-10 1 CL0033
Cotton_A_26389_CDS 72 127 70 128 PF02701.15 zf-Dof Family 3 58 59 111.5 1.5e-32 1 No_clan
Cotton_A_25878_CDS 129 365 129 379 PF07959.12 Fucokinase Family 1 248 406 209.6 7.5e-62 1 CL0536
Cotton_A_25560_CDS 392 502 369 503 PF00134.23 Cyclin_N Domain 18 125 127 70.4 1.1e-19 1 CL0065
Cotton_A_25560_CDS 506 588 506 590 PF02984.19 Cyclin_C Domain 1 84 119 47.0 2.4e-12 1 CL0065
Cotton_A_00778_CDS 126 207 125 207 PF00069.25 Pkinase Domain 2 78 264 48.2 9.2e-13 1 CL0016
Cotton_A_28988_CDS 5 266 1 279 PF00067.22 p450 Domain 196 447 463 158.6 2.1e-46 1 No_clan
Cotton_A_10963_CDS 169 199 169 204 PF03088.16 Str_synth Family 1 31 89 21.9 0.00014 1 CL0186
Cotton_A_24304_CDS 260 554 260 555 PF03715.13 Noc2 Family 1 298 299 369.4 1.2e-110 1 No_clan
Cotton_A_07122_CDS 14 175 13 175 PF04690.13 YABBY Family 2 162 162 235.6 4e-70 1 CL0114
Cotton_A_11926_CDS 101 266 100 269 PF00270.29 DEAD Domain 2 173 176 129.5 1.1e-37 1 CL0023
Cotton_A_11926_CDS 306 413 304 413 PF00271.31 Helicase_C Family 3 111 111 96.1 1.5e-27 1 CL0023
Cotton_A_15927_CDS 64 103 64 104 PF16078.5 2-oxogl_dehyd_N Family 1 40 41 58.9 2.7e-16 1 No_clan
Cotton_A_15927_CDS 244 565 241 569 PF00676.20 E1_dh Family 4 294 300 217.5 1.8e-64 1 CL0254
Cotton_A_15927_CDS 635 850 634 850 PF02779.24 Transket_pyr Domain 2 178 178 227.3 9.8e-68 1 CL0254
Cotton_A_15927_CDS 871 1011 868 1012 PF16870.5 OxoGdeHyase_C Family 9 151 152 171.1 1.2e-50 1 CL0591
Cotton_A_08536_CDS 31 115 31 115 PF14438.6 SM-ATX Domain 1 81 81 86.9 7.3e-25 1 CL0527
Cotton_A_09701_CDS 170 206 170 210 PF00514.23 Arm Repeat 1 37 41 21.4 0.00018 1 CL0020
Cotton_A_12634_CDS 9 178 7 180 PF00025.21 Arf Domain 3 173 175 151.9 1.1e-44 1 CL0023
Cotton_A_01113_CDS 206 326 206 326 PF03109.16 ABC1 Family 1 119 119 111.3 2.9e-32 1 CL0016
Cotton_A_09427_CDS 4 107 4 107 PF00044.24 Gp_dh_N Domain 1 101 101 116.2 6.8e-34 1 CL0063
Cotton_A_09427_CDS 159 316 159 316 PF02800.20 Gp_dh_C Domain 1 158 158 234.9 2.9e-70 1 CL0139
Cotton_A_39665_CDS 102 292 21 292 PF02309.16 AUX_IAA Family 66 237 237 214.6 1.7e-63 1 CL0072
Cotton_A_05385_CDS 92 525 92 525 PF00854.21 PTR2 Family 1 395 395 273.4 2.8e-81 1 CL0015
Cotton_A_20059_CDS 34 86 33 86 PF08100.11 Dimerisation Domain 2 51 51 51.4 7.8e-14 1 CL0123
Cotton_A_20059_CDS 141 346 141 346 PF00891.18 Methyltransf_2 Domain 1 210 210 193.5 2.7e-57 1 CL0063
Cotton_A_28151_CDS 7 78 7 78 PF12609.8 DUF3774 Family 1 74 74 93.7 1e-26 1 No_clan
Cotton_A_24470_CDS 62 240 62 242 PF07994.12 NAD_binding_5 Family 1 182 322 267.9 1.3e-79 1 CL0063
Cotton_A_19825_CDS 20 86 20 86 PF05641.12 Agenet Domain 1 61 61 69.8 2.1e-19 1 CL0049
Cotton_A_15145_CDS 108 301 107 301 PF01545.21 Cation_efflux Family 2 199 199 107.0 1e-30 1 No_clan
Cotton_A_15145_CDS 312 381 306 382 PF16916.5 ZT_dimer Domain 8 77 79 45.7 5.3e-12 1 No_clan
Cotton_A_05601_CDS 66 135 64 135 PF02686.15 Glu-tRNAGln Family 3 62 62 51.5 9.2e-14 1 No_clan
Cotton_A_01097_CDS 237 326 236 326 PF08743.10 Nse4_C Domain 2 91 91 82.5 1.9e-23 1 No_clan
Cotton_A_21765_CDS 6 62 1 62 PF06244.12 Ccdc124 Family 73 129 129 93.7 1.3e-26 1 CL0114
Cotton_A_38875_CDS 45 144 45 148 PF00561.20 Abhydrolase_1 Domain 1 106 257 62.2 5.8e-17 1 CL0028
Cotton_A_34341_CDS 3 316 2 318 PF08267.12 Meth_synt_1 Domain 2 311 313 398.2 2.9e-119 1 CL0160
Cotton_A_34341_CDS 432 755 432 756 PF01717.18 Meth_synt_2 Domain 1 323 324 526.0 3.5e-158 1 CL0160
Cotton_A_22659_CDS 19 285 18 287 PF00248.21 Aldo_ket_red Domain 2 292 294 159.6 9.2e-47 1 No_clan
Cotton_A_18732_CDS 174 310 151 312 PF00459.25 Inositol_P Family 157 270 272 83.1 2.3e-23 1 CL0171
Cotton_A_03131_CDS 3 56 2 57 PF13812.6 PPR_3 Repeat 9 62 63 15.9 0.01 1 CL0020
Cotton_A_03131_CDS 74 121 73 122 PF13041.6 PPR_2 Repeat 2 49 50 31.3 1.7e-07 1 CL0020
Cotton_A_03131_CDS 149 172 147 175 PF01535.20 PPR Family 3 26 31 9.9 0.89 1 CL0020
Cotton_A_30231_CDS 21 129 12 140 PF01636.23 APH Family 114 225 240 47.9 1.6e-12 1 CL0016
Cotton_A_15686_CDS 110 189 109 191 PF07885.16 Ion_trans_2 Family 2 77 79 58.7 4.1e-16 1 CL0030
Cotton_A_15686_CDS 237 305 235 309 PF07885.16 Ion_trans_2 Family 3 74 79 43.0 3.3e-11 1 CL0030
Cotton_A_15686_CDS 329 346 327 352 PF13202.6 EF-hand_5 Domain 3 21 25 13.0 0.055 1 CL0220
Cotton_A_15686_CDS 368 385 367 389 PF13202.6 EF-hand_5 Domain 3 21 25 14.9 0.014 1 CL0220
Cotton_A_30064_CDS 28 312 28 312 PF00069.25 Pkinase Domain 1 264 264 216.8 3.3e-64 1 CL0016
Cotton_A_06838_CDS 8 247 8 255 PF01370.21 Epimerase Family 1 231 241 82.7 2.6e-23 1 CL0063
Cotton_A_00918_CDS 36 160 14 175 PF17900.1 Peptidase_M1_N Domain 31 158 186 36.5 5.3e-09 1 CL0672
Cotton_A_00918_CDS 247 437 239 451 PF01433.20 Peptidase_M1 Domain 9 206 218 143.0 9.6e-42 1 CL0126
Cotton_A_00918_CDS 492 604 492 606 PF09127.11 Leuk-A4-hydro_C Family 1 111 113 98.2 2.8e-28 1 CL0020
Cotton_A_33756_CDS 79 147 79 148 PF00505.19 HMG_box Domain 1 68 69 69.7 2.1e-19 1 CL0114
Cotton_A_13702_CDS 88 110 88 110 PF00560.33 LRR_1 Repeat 1 23 23 11.4 0.41 1 CL0022
Cotton_A_26876_CDS 9 412 6 412 PF03348.15 Serinc Family 1 429 429 395.1 3.8e-118 1 No_clan
Cotton_A_03647_CDS 104 156 104 156 PF02861.20 Clp_N Family 1 53 53 62.9 2.3e-17 1 No_clan
Cotton_A_03647_CDS 180 216 179 220 PF02861.20 Clp_N Family 2 38 53 48.1 9.2e-13 1 No_clan
Cotton_A_03647_CDS 279 395 278 412 PF00004.29 AAA Domain 2 112 132 53.5 3.1e-14 1 CL0023
Cotton_A_03647_CDS 417 518 417 520 PF17871.1 AAA_lid_9 Domain 1 102 104 118.7 9.1e-35 1 CL0671
Cotton_A_03647_CDS 616 790 616 791 PF07724.14 AAA_2 Domain 1 170 171 187.2 2.4e-55 1 CL0023
Cotton_A_03647_CDS 797 877 797 877 PF10431.9 ClpB_D2-small Domain 1 81 81 82.8 1.4e-23 1 CL0671
Cotton_A_10624_CDS 150 183 149 183 PF05553.11 DUF761 Family 3 36 36 43.0 2.4e-11 1 No_clan
Cotton_A_14994_CDS 28 282 26 282 PF00069.25 Pkinase Domain 4 264 264 167.2 4.4e-49 1 CL0016
Cotton_A_14994_CDS 378 433 377 434 PF12202.8 OSR1_C Domain 2 63 64 25.6 1e-05 1 CL0487
Cotton_A_24779_CDS 24 67 24 70 PF04431.13 Pec_lyase_N Family 1 44 56 53.7 1.8e-14 1 No_clan
Cotton_A_10755_CDS 19 328 19 328 PF00389.30 2-Hacid_dh Domain 1 134 134 118.5 1.5e-34 1 CL0325
Cotton_A_10755_CDS 121 296 121 296 PF02826.19 2-Hacid_dh_C Domain 1 178 178 213.9 1e-63 1 CL0063
Cotton_A_10755_CDS 486 548 485 549 PF01842.25 ACT Domain 2 66 67 31.3 1.3e-07 1 CL0070
Cotton_A_14280_CDS 144 428 143 429 PF04515.12 Choline_transpo Family 2 325 326 121.8 3.4e-35 1 No_clan
Cotton_A_32386_CDS 160 529 159 529 PF00999.21 Na_H_Exchanger Family 2 381 381 242.2 7.8e-72 1 CL0064
Cotton_A_21631_CDS 18 179 15 179 PF13561.6 adh_short_C2 Domain 4 163 234 134.4 4.6e-39 1 CL0063
Cotton_A_09233_CDS 7 254 1 268 PF00067.22 p450 Domain 201 450 463 225.9 8.2e-67 1 No_clan
Cotton_A_03839_CDS 25 289 25 290 PF02265.16 S1-P1_nuclease Domain 1 252 253 273.7 1.7e-81 1 CL0368
Cotton_A_30402_CDS 45 142 45 142 PF04725.12 PsbR Family 1 98 98 171.0 5.3e-51 1 No_clan
Cotton_A_17467_CDS 323 584 322 590 PF00664.23 ABC_membrane Family 2 268 274 82.2 4.8e-23 1 CL0241
Cotton_A_17467_CDS 656 790 656 791 PF00005.27 ABC_tran Domain 1 136 137 71.6 9.1e-20 1 CL0023
Cotton_A_17467_CDS 941 1202 938 1206 PF00664.23 ABC_membrane Family 5 270 274 79.9 2.4e-22 1 CL0241
Cotton_A_17467_CDS 1272 1420 1272 1420 PF00005.27 ABC_tran Domain 1 137 137 102.9 2e-29 1 CL0023
Cotton_A_27234_CDS 90 226 89 227 PF12047.8 DNMT1-RFD Domain 2 143 144 123.6 6e-36 1 No_clan
Cotton_A_27234_CDS 400 553 399 554 PF12047.8 DNMT1-RFD Domain 2 143 144 132.5 1.1e-38 1 No_clan
Cotton_A_27234_CDS 753 883 751 884 PF01426.18 BAH Domain 3 121 122 49.0 5e-13 1 No_clan
Cotton_A_27234_CDS 926 1064 924 1064 PF01426.18 BAH Domain 3 122 122 84.5 5e-24 1 No_clan
Cotton_A_27234_CDS 1112 1538 1110 1539 PF00145.17 DNA_methylase Domain 3 334 335 166.4 1e-48 1 CL0063
Cotton_A_18012_CDS 69 308 69 309 PF00685.27 Sulfotransfer_1 Domain 1 266 267 177.1 4.6e-52 1 CL0023
Cotton_A_10688_CDS 54 81 52 83 PF00514.23 Arm Repeat 3 30 41 23.1 5.2e-05 1 CL0020
Cotton_A_10688_CDS 86 114 83 114 PF00514.23 Arm Repeat 13 41 41 23.5 3.9e-05 1 CL0020
Cotton_A_10688_CDS 117 154 116 156 PF00514.23 Arm Repeat 2 39 41 21.1 0.00023 1 CL0020
Cotton_A_10688_CDS 158 196 158 198 PF00514.23 Arm Repeat 1 39 41 31.5 1.2e-07 1 CL0020
Cotton_A_10688_CDS 202 239 201 241 PF00514.23 Arm Repeat 2 39 41 26.9 3.3e-06 1 CL0020
Cotton_A_29136_CDS 14 100 11 142 PF18052.1 Rx_N Domain 5 84 93 82.9 1.4e-23 1 No_clan
Cotton_A_29136_CDS 183 351 171 356 PF00931.22 NB-ARC Domain 13 183 252 126.7 8.6e-37 1 CL0023
Cotton_A_01431_CDS 156 359 155 359 PF14381.6 EDR1 Family 2 200 200 244.7 6.8e-73 1 CL0125
Cotton_A_01431_CDS 725 976 725 977 PF07714.17 Pkinase_Tyr Domain 1 258 259 226.5 3.4e-67 1 CL0016
Cotton_A_18163_CDS 33 89 33 89 PF11961.8 DUF3475 Family 1 57 57 68.1 5.2e-19 1 No_clan
Cotton_A_18163_CDS 354 445 354 445 PF05003.12 DUF668 Family 1 89 89 86.1 1.7e-24 1 No_clan
Cotton_A_18528_CDS 70 168 61 168 PF01477.23 PLAT Domain 16 117 117 49.8 4.4e-13 1 CL0321
Cotton_A_18528_CDS 182 855 181 855 PF00305.19 Lipoxygenase Domain 2 674 674 1010.6 0 1 No_clan
Cotton_A_00232_CDS 45 315 44 316 PF00494.19 SQS_PSY Domain 2 261 263 148.1 3.3e-43 1 CL0613
Cotton_A_18557_CDS 423 677 362 695 PF00481.21 PP2C Family 56 237 258 102.0 4.1e-29 1 CL0238
Cotton_A_37090_CDS 66 446 66 447 PF00916.20 Sulfate_transp Family 1 379 380 409.5 1.1e-122 1 CL0062
Cotton_A_37090_CDS 498 616 498 616 PF01740.21 STAS Domain 1 117 117 94.9 2.4e-27 1 CL0502
Cotton_A_38172_CDS 193 262 191 268 PF09409.10 PUB Domain 3 75 82 76.5 1.2e-21 1 No_clan
Cotton_A_14875_CDS 194 241 194 241 PF10533.9 Plant_zn_clust Domain 1 49 49 61.3 6.3e-17 1 No_clan
Cotton_A_14875_CDS 245 301 244 302 PF03106.15 WRKY Domain 2 58 59 91.0 4.1e-26 1 CL0274
Cotton_A_07300_CDS 167 390 167 404 PF02153.17 PDH Family 1 232 258 61.0 8.6e-17 1 CL0063
Cotton_A_06894_CDS 319 470 260 480 PF00067.22 p450 Domain 293 434 463 50.5 1.4e-13 1 No_clan
Cotton_A_05720_CDS 84 173 84 173 PF00447.17 HSF_DNA-bind Domain 1 96 96 101.8 2.4e-29 1 CL0123
Cotton_A_39026_CDS 51 137 51 144 PF00295.17 Glyco_hydro_28 Domain 1 86 325 48.9 4.6e-13 1 CL0268
Cotton_A_39026_CDS 145 325 141 327 PF00295.17 Glyco_hydro_28 Domain 122 319 325 143.2 9.3e-42 1 CL0268
Cotton_A_19521_CDS 97 294 97 317 PF11935.8 DUF3453 Family 1 190 226 147.4 4.9e-43 1 No_clan
Cotton_A_10941_CDS 108 334 107 361 PF03124.14 EXS Family 2 198 331 126.7 1.2e-36 1 CL0182
Cotton_A_10941_CDS 361 494 353 495 PF03124.14 EXS Family 197 330 331 148.2 3.6e-43 1 CL0182
Cotton_A_23687_CDS 16 271 16 271 PF00069.25 Pkinase Domain 1 264 264 246.7 2.4e-73 1 CL0016
Cotton_A_23687_CDS 315 375 315 375 PF03822.14 NAF Domain 1 54 54 80.7 6.3e-23 1 CL0573
Cotton_A_11319_CDS 282 992 282 992 PF00343.20 Phosphorylase Family 1 711 711 971.8 2.1e-292 1 CL0113
Cotton_A_32575_CDS 75 100 75 102 PF01535.20 PPR Family 1 26 31 12.4 0.15 1 CL0020
Cotton_A_32575_CDS 103 149 103 151 PF13041.6 PPR_2 Repeat 1 47 50 33.8 2.8e-08 1 CL0020
Cotton_A_32575_CDS 177 201 177 203 PF01535.20 PPR Family 4 28 31 22.3 0.0001 1 CL0020
Cotton_A_32575_CDS 203 250 203 252 PF13041.6 PPR_2 Repeat 1 48 50 34.0 2.4e-08 1 CL0020
Cotton_A_32575_CDS 305 354 305 355 PF13041.6 PPR_2 Repeat 1 49 50 39.0 6.6e-10 1 CL0020
Cotton_A_32575_CDS 408 455 407 456 PF13041.6 PPR_2 Repeat 2 49 50 35.2 1e-08 1 CL0020
Cotton_A_32575_CDS 475 506 474 507 PF12854.7 PPR_1 Repeat 2 33 34 28.4 9.8e-07 1 CL0020
Cotton_A_32575_CDS 549 577 547 577 PF01535.20 PPR Family 3 31 31 15.9 0.011 1 CL0020
Cotton_A_32575_CDS 581 708 581 708 PF14432.6 DYW_deaminase Family 1 127 127 123.0 6.6e-36 1 CL0109
Cotton_A_24729_CDS 44 68 43 69 PF13912.6 zf-C2H2_6 Domain 2 26 27 30.5 2.6e-07 1 CL0361
Cotton_A_07209_CDS 45 216 44 218 PF00155.21 Aminotran_1_2 Domain 2 185 363 110.3 1.2e-31 1 CL0061
Cotton_A_35463_CDS 12 108 12 122 PF14226.6 DIOX_N Family 1 99 118 78.2 8.3e-22 1 CL0029
Cotton_A_35463_CDS 167 262 163 262 PF03171.20 2OG-FeII_Oxy Domain 7 101 101 95.0 3.2e-27 1 CL0029
Cotton_A_33011_CDS 33 81 30 89 PF00403.26 HMA Domain 4 56 62 55.2 7.1e-15 1 No_clan
Cotton_A_12037_CDS 384 416 379 417 PF00400.32 WD40 Repeat 6 37 38 17.8 0.0046 1 CL0186
Cotton_A_12037_CDS 475 510 473 510 PF00400.32 WD40 Repeat 3 38 38 30.6 4e-07 1 CL0186
Cotton_A_12037_CDS 515 552 514 552 PF00400.32 WD40 Repeat 2 38 38 23.1 9.4e-05 1 CL0186
Cotton_A_07636_CDS 2 36 1 36 PF00249.31 Myb_DNA-binding Domain 14 46 46 37.4 2.1e-09 1 CL0123
Cotton_A_07636_CDS 42 87 42 87 PF00249.31 Myb_DNA-binding Domain 1 46 46 55.3 5.4e-15 1 CL0123
Cotton_A_22508_CDS 25 127 24 128 PF00085.20 Thioredoxin Domain 2 102 103 114.7 1.7e-33 1 CL0172
Cotton_A_22508_CDS 143 246 142 247 PF00085.20 Thioredoxin Domain 2 102 103 114.9 1.4e-33 1 CL0172
Cotton_A_22508_CDS 264 357 264 357 PF07749.12 ERp29 Domain 1 96 96 85.7 3.1e-24 1 No_clan
Cotton_A_34096_CDS 20 337 20 338 PF00657.22 Lipase_GDSL Family 2 199 200 55.9 5.4e-15 1 CL0264
Cotton_A_27576_CDS 13 334 12 335 PF16913.5 PUNUT Family 2 321 322 415.1 1.8e-124 1 CL0184
Cotton_A_40466_CDS 289 323 287 323 PF00627.31 UBA Domain 3 37 37 29.2 6.3e-07 1 CL0214
Cotton_A_20202_CDS 85 465 85 466 PF00916.20 Sulfate_transp Family 1 379 380 375.3 2.6e-112 1 CL0062
Cotton_A_23547_CDS 8 137 8 137 PF14226.6 DIOX_N Family 1 118 118 114.6 4.3e-33 1 CL0029
Cotton_A_23547_CDS 199 286 183 286 PF03171.20 2OG-FeII_Oxy Domain 14 101 101 71.6 6.3e-20 1 CL0029
Cotton_A_00941_CDS 179 362 167 382 PF00481.21 PP2C Family 64 233 258 158.8 1.9e-46 1 CL0238
Cotton_A_21732_CDS 39 442 37 444 PF00860.20 Xan_ur_permease Family 3 387 389 220.7 2.5e-65 1 CL0062
Cotton_A_37828_CDS 206 302 168 302 PF13365.6 Trypsin_2 Domain 50 150 150 30.8 4.8e-07 1 CL0124
Cotton_A_37828_CDS 404 617 404 617 PF13365.6 Trypsin_2 Domain 1 150 150 89.5 3.8e-25 1 CL0124
Cotton_A_09497_CDS 53 99 47 102 PF00571.28 CBS Domain 7 53 57 29.4 8.1e-07 1 No_clan
Cotton_A_09497_CDS 113 158 113 173 PF00571.28 CBS Domain 1 47 57 22.3 0.00013 1 No_clan
Cotton_A_09497_CDS 227 272 220 275 PF00571.28 CBS Domain 8 54 57 23.1 7.6e-05 1 No_clan
Cotton_A_09497_CDS 285 326 285 337 PF00571.28 CBS Domain 1 42 57 24.7 2.4e-05 1 No_clan
Cotton_A_09497_CDS 416 477 407 479 PF00564.24 PB1 Domain 23 82 84 33.3 3.4e-08 1 CL0072
Cotton_A_39676_CDS 47 96 13 97 PF14510.6 ABC_trans_N Domain 33 80 81 29.8 6.8e-07 1 No_clan
Cotton_A_39676_CDS 123 303 122 303 PF00005.27 ABC_tran Domain 2 137 137 58.4 1.1e-15 1 CL0023
Cotton_A_39676_CDS 435 645 433 646 PF01061.24 ABC2_membrane Family 3 209 210 116.6 9.9e-34 1 CL0181
Cotton_A_39676_CDS 651 713 651 713 PF08370.11 PDR_assoc Family 1 65 65 76.6 8.9e-22 1 No_clan
Cotton_A_39676_CDS 784 934 783 935 PF00005.27 ABC_tran Domain 2 136 137 70.0 2.7e-19 1 CL0023
Cotton_A_39676_CDS 1083 1271 1082 1273 PF01061.24 ABC2_membrane Family 2 185 210 138.6 1.8e-40 1 CL0181
Cotton_A_20959_CDS 125 222 117 224 PF00651.31 BTB Domain 11 108 111 54.6 1.1e-14 1 CL0033
Cotton_A_20959_CDS 248 340 245 342 PF07707.15 BACK Domain 14 101 103 38.0 1.4e-09 1 CL0033
Cotton_A_35950_CDS 5 52 4 53 PF13041.6 PPR_2 Repeat 2 49 50 30.6 2.8e-07 1 CL0020
Cotton_A_35950_CDS 80 105 77 106 PF01535.20 PPR Family 4 29 31 12.0 0.2 1 CL0020
Cotton_A_35950_CDS 108 138 108 138 PF01535.20 PPR Family 1 31 31 31.1 1.6e-07 1 CL0020
Cotton_A_35950_CDS 208 255 207 256 PF13041.6 PPR_2 Repeat 2 49 50 47.1 2e-12 1 CL0020
Cotton_A_35950_CDS 283 305 280 307 PF01535.20 PPR Family 4 26 31 12.5 0.13 1 CL0020
Cotton_A_35950_CDS 311 356 308 357 PF13041.6 PPR_2 Repeat 4 49 50 50.0 2.4e-13 1 CL0020
Cotton_A_35950_CDS 383 407 382 410 PF01535.20 PPR Family 2 26 31 18.4 0.0019 1 CL0020
Cotton_A_24546_CDS 83 245 83 248 PF00920.21 ILVD_EDD Family 1 161 517 194.2 3.4e-57 1 No_clan
Cotton_A_15125_CDS 54 132 51 133 PF14547.6 Hydrophob_seed Domain 5 84 85 77.0 9.6e-22 1 CL0482
Cotton_A_08184_CDS 29 66 25 66 PF08263.12 LRRNT_2 Family 5 41 41 38.8 8.5e-10 1 No_clan
Cotton_A_08184_CDS 95 154 94 154 PF13855.6 LRR_8 Repeat 2 61 61 28.8 7.8e-07 1 CL0022
Cotton_A_08184_CDS 212 233 212 243 PF00560.33 LRR_1 Repeat 1 22 23 10.3 0.94 1 CL0022
Cotton_A_08184_CDS 365 630 362 633 PF07714.17 Pkinase_Tyr Domain 5 256 259 73.8 1.3e-20 1 CL0016
Cotton_A_11116_CDS 50 100 50 100 PF12906.7 RINGv Domain 1 48 48 41.6 1e-10 1 CL0229
Cotton_A_10615_CDS 14 142 14 142 PF05512.11 AWPM-19 Family 1 142 142 184.3 1.3e-54 1 No_clan
Cotton_A_08848_CDS 76 195 76 201 PF13837.6 Myb_DNA-bind_4 Domain 1 84 90 68.4 5.2e-19 1 CL0123
Cotton_A_35324_CDS 57 87 52 87 PF00132.24 Hexapep Repeat 6 36 36 21.6 0.00012 1 CL0536
Cotton_A_35324_CDS 120 151 119 151 PF00132.24 Hexapep Repeat 2 34 36 21.3 0.00015 1 CL0536
Cotton_A_38376_CDS 15 137 15 143 PF04857.20 CAF1 Family 1 126 319 49.5 3.3e-13 1 CL0219
Cotton_A_38376_CDS 159 243 145 243 PF04857.20 CAF1 Family 210 319 319 26.0 4.8e-06 1 CL0219
Cotton_A_10520_CDS 22 79 20 79 PF00046.29 Homeodomain Domain 4 57 57 58.3 5e-16 1 CL0123
Cotton_A_10520_CDS 160 368 159 369 PF01852.19 START Domain 2 208 209 159.9 5.3e-47 1 CL0209
Cotton_A_10520_CDS 707 851 706 851 PF08670.11 MEKHLA Domain 2 143 143 162.9 4.2e-48 1 CL0183
Cotton_A_16543_CDS 151 169 150 170 PF00612.27 IQ Motif 2 20 21 12.6 0.092 1 CL0220
Cotton_A_16543_CDS 176 193 173 193 PF00612.27 IQ Motif 4 21 21 21.3 0.00014 1 CL0220
Cotton_A_16217_CDS 142 433 140 435 PF07899.11 Frigida Family 3 287 289 279.4 3e-83 1 No_clan
Cotton_A_35138_CDS 2 154 1 162 PF00067.22 p450 Domain 38 197 463 46.6 2.1e-12 1 No_clan
Cotton_A_18391_CDS 14 232 11 232 PF00230.20 MIP Family 4 227 227 257.9 8.3e-77 1 No_clan
Cotton_A_29261_CDS 52 92 48 92 PF02671.21 PAH Repeat 5 45 45 38.5 9.6e-10 1 No_clan
Cotton_A_29261_CDS 196 236 192 236 PF02671.21 PAH Repeat 5 45 45 38.3 1.1e-09 1 No_clan
Cotton_A_34548_CDS 38 507 38 512 PF00067.22 p450 Domain 1 456 463 295.8 5.3e-88 1 No_clan
Cotton_A_34548_CDS 572 1028 567 1043 PF00067.22 p450 Domain 5 448 463 284.9 1.1e-84 1 No_clan
Cotton_A_22821_CDS 31 119 18 128 PF02769.22 AIRS_C Domain 54 146 156 53.1 3.7e-14 1 No_clan
Cotton_A_22821_CDS 196 264 196 270 PF13507.6 GATase_5 Domain 1 69 260 72.3 3.3e-20 1 CL0014
Cotton_A_22821_CDS 278 402 268 403 PF13507.6 GATase_5 Domain 117 240 260 143.9 4.5e-42 1 CL0014
Cotton_A_08603_CDS 18 85 18 87 PF00076.22 RRM_1 Domain 1 68 70 54.3 8.5e-15 1 CL0221
Cotton_A_08603_CDS 311 381 311 381 PF00076.22 RRM_1 Domain 1 70 70 67.9 5e-19 1 CL0221
Cotton_A_08603_CDS 507 570 507 571 PF00076.22 RRM_1 Domain 1 69 70 29.6 4.5e-07 1 CL0221
Cotton_A_08603_CDS 628 702 628 703 PF00076.22 RRM_1 Domain 1 69 70 46.8 1.9e-12 1 CL0221
Cotton_A_08603_CDS 727 794 727 795 PF00076.22 RRM_1 Domain 1 69 70 69.3 1.8e-19 1 CL0221
Cotton_A_11646_CDS 36 132 34 134 PF00307.31 CH Domain 7 107 109 35.4 9.7e-09 1 CL0188
Cotton_A_11646_CDS 433 750 433 752 PF00225.23 Kinesin Domain 1 331 333 332.9 1.8e-99 1 CL0023
Cotton_A_24865_CDS 147 382 143 383 PF00931.22 NB-ARC Domain 5 251 252 172.0 1.3e-50 1 CL0023
Cotton_A_24865_CDS 542 585 539 587 PF13855.6 LRR_8 Repeat 13 57 61 31.5 1.1e-07 1 CL0022
Cotton_A_26134_CDS 21 294 14 294 PF03151.16 TPT Family 13 290 290 70.2 1.8e-19 1 CL0184
Cotton_A_13866_CDS 223 355 221 382 PF05450.15 Nicastrin Family 3 147 234 27.4 2e-06 1 CL0035
Cotton_A_12673_CDS 43 292 39 293 PF00481.21 PP2C Family 5 257 258 245.4 7.1e-73 1 CL0238
Cotton_A_18003_CDS 86 129 86 131 PF01344.25 Kelch_1 Repeat 1 44 46 31.0 1.4e-07 1 CL0186
Cotton_A_18003_CDS 195 234 195 245 PF13418.6 Kelch_4 Repeat 1 41 49 32.5 6.5e-08 1 CL0186
Cotton_A_18003_CDS 277 319 277 327 PF13418.6 Kelch_4 Repeat 1 44 49 34.1 2e-08 1 CL0186
Cotton_A_29587_CDS 2 36 2 83 PF00786.28 PBD Domain 1 38 59 31.9 1.2e-07 1 No_clan
Cotton_A_13550_CDS 23 349 23 350 PF00332.18 Glyco_hydro_17 Domain 1 312 313 187.3 5.1e-55 1 CL0058
Cotton_A_00904_CDS 3 148 1 154 PF00067.22 p450 Domain 314 456 463 164.5 3.4e-48 1 No_clan
Cotton_A_19869_CDS 40 65 40 66 PF13912.6 zf-C2H2_6 Domain 1 26 27 27.4 2.5e-06 1 CL0361
Cotton_A_06931_CDS 30 141 29 142 PF01398.21 JAB Family 2 117 118 111.4 2.4e-32 1 CL0366
Cotton_A_06931_CDS 176 294 176 310 PF13012.6 MitMem_reg Family 1 83 112 50.6 2.1e-13 1 No_clan
Cotton_A_28409_CDS 19 107 19 118 PF01453.24 B_lectin Domain 1 94 105 85.1 4.1e-24 1 No_clan
Cotton_A_28409_CDS 127 353 110 355 PF00069.25 Pkinase Domain 44 260 264 150.6 5.1e-44 1 CL0016
Cotton_A_15472_CDS 36 101 35 101 PF13499.6 EF-hand_7 Domain 2 71 71 54.5 1.2e-14 1 CL0220
Cotton_A_31847_CDS 386 783 382 784 PF02181.23 FH2 Family 5 371 372 362.0 3.7e-108 1 No_clan
Cotton_A_15202_CDS 26 192 24 213 PF00069.25 Pkinase Domain 3 153 264 113.5 1.1e-32 1 CL0016
Cotton_A_15202_CDS 248 346 234 346 PF00069.25 Pkinase Domain 152 264 264 80.4 1.3e-22 1 CL0016
Cotton_A_31701_CDS 43 118 28 129 PF00293.28 NUDIX Domain 31 115 131 26.4 5.8e-06 1 CL0261
Cotton_A_06512_CDS 165 207 161 209 PF13041.6 PPR_2 Repeat 6 48 50 34.5 1.7e-08 1 CL0020
Cotton_A_06512_CDS 228 259 226 259 PF12854.7 PPR_1 Repeat 3 34 34 37.6 1.3e-09 1 CL0020
Cotton_A_06512_CDS 265 314 265 314 PF13041.6 PPR_2 Repeat 1 50 50 63.3 1.8e-17 1 CL0020
Cotton_A_06512_CDS 333 363 331 364 PF12854.7 PPR_1 Repeat 3 33 34 34.0 1.7e-08 1 CL0020
Cotton_A_06512_CDS 370 419 370 419 PF13041.6 PPR_2 Repeat 1 50 50 54.7 8.2e-15 1 CL0020
Cotton_A_06512_CDS 445 487 443 489 PF13041.6 PPR_2 Repeat 6 48 50 52.9 3e-14 1 CL0020
Cotton_A_06512_CDS 507 538 506 539 PF12854.7 PPR_1 Repeat 2 33 34 24.4 1.7e-05 1 CL0020
Cotton_A_06512_CDS 542 574 541 574 PF12854.7 PPR_1 Repeat 2 34 34 35.9 4.3e-09 1 CL0020
Cotton_A_06512_CDS 580 629 580 629 PF13041.6 PPR_2 Repeat 1 50 50 46.7 2.7e-12 1 CL0020
Cotton_A_06512_CDS 651 699 650 699 PF13041.6 PPR_2 Repeat 2 50 50 53.8 1.7e-14 1 CL0020
Cotton_A_06512_CDS 720 750 719 750 PF12854.7 PPR_1 Repeat 4 34 34 26.7 3.3e-06 1 CL0020
Cotton_A_06512_CDS 757 805 756 805 PF13041.6 PPR_2 Repeat 2 50 50 34.2 2.2e-08 1 CL0020
Cotton_A_06512_CDS 846 965 839 971 PF17177.4 PPR_long Domain 29 157 212 27.9 1.4e-06 1 CL0020
Cotton_A_06512_CDS 973 997 972 999 PF01535.20 PPR Family 5 29 31 11.3 0.33 1 CL0020
Cotton_A_06512_CDS 998 1030 997 1030 PF12854.7 PPR_1 Repeat 2 34 34 30.2 2.6e-07 1 CL0020
Cotton_A_06512_CDS 1037 1083 1036 1084 PF13041.6 PPR_2 Repeat 2 48 50 60.6 1.2e-16 1 CL0020
Cotton_A_27286_CDS 7 291 1 291 PF05055.12 DUF677 Family 28 336 336 57.1 1.3e-15 1 CL0133
Cotton_A_37682_CDS 20 120 20 120 PF12776.7 Myb_DNA-bind_3 Domain 1 96 96 36.1 9.5e-09 1 CL0123
Cotton_A_20493_CDS 111 506 111 507 PF10255.9 Paf67 Family 1 404 405 493.2 5.9e-148 1 CL0020
Cotton_A_13143_CDS 320 369 319 369 PF00249.31 Myb_DNA-binding Domain 2 46 46 31.9 1.1e-07 1 CL0123
Cotton_A_27161_CDS 59 133 58 135 PF03061.22 4HBT Domain 2 77 79 49.5 4.2e-13 1 CL0050
Cotton_A_07759_CDS 6 98 1 98 PF10536.9 PMD Domain 97 182 363 50.9 1.2e-13 1 No_clan
Cotton_A_30653_CDS 254 623 252 623 PF03514.14 GRAS Family 3 374 374 399.9 9.9e-120 1 CL0063
Cotton_A_07960_CDS 1 90 1 91 PF01301.19 Glyco_hydro_35 Domain 227 315 316 115.6 3.3e-33 1 CL0058
Cotton_A_07960_CDS 98 171 98 171 PF17834.1 GHD Domain 1 72 72 56.6 1.9e-15 1 CL0369
Cotton_A_07960_CDS 463 540 463 540 PF02140.18 Gal_Lectin Domain 1 80 80 63.4 2e-17 1 No_clan
Cotton_A_19936_CDS 66 129 65 129 PF00808.23 CBFD_NFYB_HMF Domain 2 65 65 72.4 2.7e-20 1 CL0012
Cotton_A_17729_CDS 145 195 108 205 PF01764.25 Lipase_3 Family 51 105 142 22.8 6.5e-05 1 CL0028
Cotton_A_22577_CDS 43 145 27 145 PF00583.25 Acetyltransf_1 Family 18 117 117 50.8 1.7e-13 1 CL0257
Cotton_A_38770_CDS 29 155 29 155 PF02365.15 NAM Family 1 126 126 138.3 2.5e-40 1 No_clan
Cotton_A_24653_CDS 8 55 8 55 PF00249.31 Myb_DNA-binding Domain 1 46 46 59.9 2e-16 1 CL0123
Cotton_A_24653_CDS 61 105 61 106 PF00249.31 Myb_DNA-binding Domain 1 45 46 53.1 2.7e-14 1 CL0123
Cotton_A_13887_CDS 183 224 180 230 PF00170.21 bZIP_1 Family 4 45 64 30.1 3.9e-07 1 CL0018
Cotton_A_13887_CDS 265 340 265 341 PF14144.6 DOG1 Family 1 76 77 98.5 1.9e-28 1 No_clan
Cotton_A_13887_CDS 583 632 581 632 PF08063.12 PADR1 Domain 3 53 53 61.9 3.5e-17 1 CL0306
Cotton_A_13887_CDS 669 746 667 746 PF00533.26 BRCT Family 3 79 79 33.4 4.4e-08 1 CL0459
Cotton_A_13887_CDS 818 897 818 899 PF05406.15 WGR Domain 1 79 80 45.5 5.8e-12 1 No_clan
Cotton_A_13887_CDS 941 1074 941 1074 PF02877.14 PARP_reg Domain 1 136 136 72.9 2.6e-20 1 No_clan
Cotton_A_13887_CDS 1088 1292 1088 1292 PF00644.20 PARP Family 1 195 195 159.3 8.5e-47 1 CL0084
Cotton_A_10465_CDS 32 81 32 81 PF08100.11 Dimerisation Domain 1 51 51 65.2 4e-18 1 CL0123
Cotton_A_18979_CDS 59 224 53 224 PF02507.15 PSI_PsaF Family 7 172 172 267.6 4.4e-80 1 No_clan
Cotton_A_02865_CDS 8 113 6 121 PF00168.30 C2 Domain 3 94 103 40.9 1.9e-10 1 CL0154
Cotton_A_20385_CDS 7 48 6 48 PF08263.12 LRRNT_2 Family 2 41 41 34.5 1.9e-08 1 No_clan
Cotton_A_20385_CDS 77 92 76 93 PF13516.6 LRR_6 Repeat 2 17 24 9.9 0.79 1 CL0022
Cotton_A_20385_CDS 184 244 183 245 PF13855.6 LRR_8 Repeat 2 60 61 29.3 5.4e-07 1 CL0022
Cotton_A_20385_CDS 462 483 462 483 PF00560.33 LRR_1 Repeat 2 23 23 11.7 0.32 1 CL0022
Cotton_A_20385_CDS 530 547 530 547 PF13516.6 LRR_6 Repeat 1 18 24 11.4 0.27 1 CL0022
Cotton_A_20385_CDS 582 596 579 597 PF13516.6 LRR_6 Repeat 4 18 24 9.4 1.2 1 CL0022
Cotton_A_29405_CDS 31 295 31 295 PF04674.12 Phi_1 Family 1 276 276 389.3 9.1e-117 1 No_clan
Cotton_A_33340_CDS 27 103 27 103 PF03134.19 TB2_DP1_HVA22 Family 1 77 77 102.7 7.2e-30 1 No_clan
Cotton_A_23842_CDS 32 71 31 71 PF08263.12 LRRNT_2 Family 2 41 41 45.7 5.9e-12 1 No_clan
Cotton_A_23842_CDS 124 143 124 147 PF00560.33 LRR_1 Repeat 1 20 23 9.4 1.8 1 CL0022
Cotton_A_23842_CDS 149 208 148 208 PF13855.6 LRR_8 Repeat 2 61 61 34.9 9.7e-09 1 CL0022
Cotton_A_23842_CDS 693 899 692 959 PF00069.25 Pkinase Domain 2 203 264 136.6 9.7e-40 1 CL0016
Cotton_A_33462_CDS 5 34 4 34 PF04438.16 zf-HIT Domain 2 30 30 38.8 6.2e-10 1 CL0175
Cotton_A_21047_CDS 3 145 3 145 PF02458.15 Transferase Family 1 145 434 101.4 4.4e-29 1 CL0149
Cotton_A_17259_CDS 18 96 17 101 PF03321.13 GH3 Family 2 79 527 81.5 5.8e-23 1 CL0378
Cotton_A_17259_CDS 97 525 93 526 PF03321.13 GH3 Family 119 526 527 473.5 9.7e-142 1 CL0378
Cotton_A_01343_CDS 3 242 1 242 PF04080.13 Per1 Family 22 255 255 252.6 4.7e-75 1 CL0192
Cotton_A_40194_CDS 70 118 70 118 PF03107.16 C1_2 Domain 1 47 47 33.8 3e-08 1 CL0006
Cotton_A_40194_CDS 128 173 127 173 PF03107.16 C1_2 Domain 2 47 47 31.4 1.7e-07 1 CL0006
Cotton_A_37794_CDS 23 91 8 99 PF02362.21 B3 Family 17 92 101 41.8 7.6e-11 1 CL0405
Cotton_A_10223_CDS 75 209 75 211 PF01565.23 FAD_binding_4 Domain 1 136 139 86.4 1.4e-24 1 CL0077
Cotton_A_10223_CDS 462 519 462 519 PF08031.12 BBE Domain 1 46 46 70.6 8.6e-20 1 CL0277
Cotton_A_08424_CDS 40 385 38 385 PF04724.13 Glyco_transf_17 Family 3 349 349 596.3 1.7e-179 1 No_clan
Cotton_A_39952_CDS 78 207 76 209 PF00134.23 Cyclin_N Domain 3 125 127 100.2 7e-29 1 CL0065
Cotton_A_39952_CDS 211 315 211 321 PF02984.19 Cyclin_C Domain 1 107 119 35.9 6.4e-09 1 CL0065
Cotton_A_08787_CDS 50 122 49 125 PF03061.22 4HBT Domain 2 75 79 50.9 1.5e-13 1 CL0050
Cotton_A_36813_CDS 49 142 46 148 PF02259.23 FAT Family 123 215 346 87.5 9.8e-25 1 CL0020
Cotton_A_15662_CDS 110 214 110 215 PF02362.21 B3 Family 1 100 101 102.9 6.7e-30 1 CL0405
Cotton_A_08330_CDS 145 257 144 257 PF14288.6 FKS1_dom1 Family 2 129 129 127.0 5.5e-37 1 No_clan
Cotton_A_08330_CDS 854 889 853 891 PF02364.15 Glucan_synthase Family 2 37 819 29.3 2.5e-07 1 CL0111
Cotton_A_08330_CDS 917 1070 888 1075 PF02364.15 Glucan_synthase Family 127 288 819 152.9 1.1e-44 1 CL0111
Cotton_A_08330_CDS 1076 1147 1070 1221 PF02364.15 Glucan_synthase Family 536 612 819 36.7 1.5e-09 1 CL0111
Cotton_A_00489_CDS 63 85 63 85 PF02493.20 MORN Repeat 1 23 23 14.2 0.03 1 CL0251
Cotton_A_00489_CDS 86 108 86 108 PF02493.20 MORN Repeat 1 23 23 32.0 6.6e-08 1 CL0251
Cotton_A_00489_CDS 109 128 109 131 PF02493.20 MORN Repeat 1 20 23 18.3 0.0015 1 CL0251
Cotton_A_00489_CDS 132 154 132 154 PF02493.20 MORN Repeat 1 23 23 16.0 0.0082 1 CL0251
Cotton_A_00489_CDS 155 177 155 177 PF02493.20 MORN Repeat 1 23 23 26.1 5.1e-06 1 CL0251
Cotton_A_00489_CDS 178 199 178 200 PF02493.20 MORN Repeat 1 22 23 21.0 0.00021 1 CL0251
Cotton_A_00489_CDS 201 222 201 223 PF02493.20 MORN Repeat 1 22 23 29.4 4.3e-07 1 CL0251
Cotton_A_00489_CDS 224 245 224 245 PF02493.20 MORN Repeat 1 23 23 16.3 0.0064 1 CL0251
Cotton_A_00489_CDS 497 816 496 817 PF01504.18 PIP5K Family 2 273 274 308.5 3.6e-92 1 CL0016
Cotton_A_17992_CDS 47 93 47 93 PF13445.6 zf-RING_UBOX Domain 1 39 39 29.8 4.3e-07 1 CL0229
Cotton_A_08972_CDS 22 53 20 53 PF14369.6 zinc_ribbon_9 Domain 3 35 35 47.2 2e-12 1 CL0167
Cotton_A_08972_CDS 212 255 212 255 PF13639.6 zf-RING_2 Domain 1 44 44 40.4 2.7e-10 1 CL0229
Cotton_A_24349_CDS 62 189 62 189 PF17767.1 NAPRTase_N Domain 1 125 125 135.3 1.5e-39 1 CL0105
Cotton_A_24349_CDS 468 577 468 578 PF17956.1 NAPRTase_C Domain 1 110 111 123.0 7.3e-36 1 No_clan
Cotton_A_33594_CDS 411 621 410 625 PF00632.25 HECT Domain 2 206 307 133.6 1e-38 1 CL0552
Cotton_A_31890_CDS 172 400 168 407 PF00931.22 NB-ARC Domain 6 245 252 155.2 1.7e-45 1 CL0023
Cotton_A_20670_CDS 37 146 37 148 PF14226.6 DIOX_N Family 1 117 118 82.5 3.8e-23 1 CL0029
Cotton_A_20670_CDS 192 289 190 289 PF03171.20 2OG-FeII_Oxy Domain 3 101 101 88.7 2.8e-25 1 CL0029
Cotton_A_04099_CDS 94 255 94 256 PF14543.6 TAXi_N Domain 1 177 178 130.0 1.1e-37 1 CL0129
Cotton_A_06242_CDS 154 231 154 232 PF11282.8 DUF3082 Family 1 79 80 102.8 8.5e-30 1 No_clan
Cotton_A_19448_CDS 74 427 74 427 PF03372.23 Exo_endo_phos Domain 1 233 233 55.3 6.6e-15 1 CL0530
Cotton_A_16428_CDS 215 262 215 266 PF00175.21 NAD_binding_1 Domain 1 44 109 38.1 2e-09 1 CL0091
Cotton_A_07020_CDS 61 330 39 330 PF00069.25 Pkinase Domain 18 264 264 225.6 6.6e-67 1 CL0016
Cotton_A_02676_CDS 215 477 173 477 PF00481.21 PP2C Family 30 258 258 211.8 1.3e-62 1 CL0238
Cotton_A_09812_CDS 29 66 26 66 PF08263.12 LRRNT_2 Family 4 41 41 39.1 6.9e-10 1 No_clan
Cotton_A_09812_CDS 118 177 118 178 PF13855.6 LRR_8 Repeat 1 60 61 33.6 2.5e-08 1 CL0022
Cotton_A_09812_CDS 288 309 288 310 PF00560.33 LRR_1 Repeat 1 22 23 9.8 1.4 1 CL0022
Cotton_A_09812_CDS 360 378 360 383 PF00560.33 LRR_1 Repeat 1 19 23 9.8 1.4 1 CL0022
Cotton_A_09812_CDS 697 964 695 966 PF00069.25 Pkinase Domain 3 260 264 157.3 4.8e-46 1 CL0016
Cotton_A_00460_CDS 137 177 100 180 PF08241.12 Methyltransf_11 Domain 52 93 96 23.8 5.4e-05 1 CL0063
Cotton_A_35868_CDS 18 49 17 56 PF02892.15 zf-BED Domain 4 37 44 23.1 5.5e-05 1 CL0361
Cotton_A_21139_CDS 209 257 207 268 PF00170.21 bZIP_1 Family 5 53 64 33.8 2.6e-08 1 CL0018
Cotton_A_37519_CDS 16 74 15 83 PF13499.6 EF-hand_7 Domain 2 66 71 31.8 1.4e-07 1 CL0220
Cotton_A_15981_CDS 67 222 66 222 PF09366.10 DUF1997 Family 2 154 154 149.9 6.1e-44 1 No_clan
Cotton_A_13340_CDS 102 203 102 208 PF16136.5 NINJA_B Family 1 106 111 34.4 2.4e-08 1 No_clan
Cotton_A_13340_CDS 239 300 234 301 PF16135.5 Jas Family 7 75 76 44.7 1.2e-11 1 No_clan
Cotton_A_26618_CDS 171 223 170 223 PF14416.6 PMR5N Domain 2 53 53 74.4 6.5e-21 1 No_clan
Cotton_A_26618_CDS 224 499 224 500 PF13839.6 PC-Esterase Family 1 282 283 324.9 5.4e-97 1 CL0264
Cotton_A_03404_CDS 84 167 84 169 PF03061.22 4HBT Domain 1 77 79 50.3 2.2e-13 1 CL0050
Cotton_A_01396_CDS 200 489 200 489 PF00850.19 Hist_deacetyl Domain 1 307 307 286.2 3.4e-85 1 CL0302
Cotton_A_11519_CDS 29 339 27 351 PF00743.19 FMO-like Family 6 335 532 102.8 1.6e-29 1 CL0063
Cotton_A_15195_CDS 34 95 33 102 PF08240.12 ADH_N Domain 2 61 109 43.8 1.9e-11 1 CL0296
Cotton_A_15195_CDS 196 325 196 325 PF13602.6 ADH_zinc_N_2 Domain 1 133 133 73.9 2.5e-20 1 CL0063
Cotton_A_27879_CDS 159 223 159 223 PF12394.8 DUF3657 Family 1 66 66 58.9 5.5e-16 1 No_clan
Cotton_A_27879_CDS 540 744 537 746 PF05057.14 DUF676 Family 5 217 219 186.4 4.8e-55 1 CL0028
Cotton_A_18423_CDS 9 92 4 96 PF11837.8 DUF3357 Family 6 90 109 32.1 1.2e-07 1 No_clan
Cotton_A_18423_CDS 138 453 138 453 PF00251.20 Glyco_hydro_32N Domain 1 305 305 335.8 2.8e-100 1 CL0143
Cotton_A_18423_CDS 456 647 456 647 PF08244.12 Glyco_hydro_32C Domain 1 158 158 96.1 2.1e-27 1 CL0004
Cotton_A_10605_CDS 99 122 78 122 PF00400.32 WD40 Repeat 15 38 38 14.6 0.047 1 CL0186
Cotton_A_10605_CDS 126 165 126 165 PF00400.32 WD40 Repeat 1 38 38 18.5 0.0027 1 CL0186
Cotton_A_37447_CDS 54 77 53 78 PF05678.14 VQ Motif 2 25 28 42.9 2.3e-11 1 No_clan
Cotton_A_34710_CDS 141 179 140 179 PF13923.6 zf-C3HC4_2 Domain 2 40 40 30.3 2.7e-07 1 CL0229
Cotton_A_31410_CDS 18 111 5 139 PF04845.13 PurA Family 82 189 219 65.2 5e-18 1 CL0609
Cotton_A_40346_CDS 105 382 93 384 PF10250.9 O-FucT Family 14 334 336 82.5 4.4e-23 1 CL0113
Cotton_A_00191_CDS 11 347 9 347 PF00223.19 PsaA_PsaB Family 4 354 718 476.7 1.2e-142 1 No_clan
Cotton_A_23008_CDS 334 535 332 536 PF00924.18 MS_channel Family 3 205 206 122.0 2.4e-35 1 No_clan
Cotton_A_00102_CDS 49 292 46 292 PF00069.25 Pkinase Domain 5 264 264 226.5 3.6e-67 1 CL0016
Cotton_A_12464_CDS 26 69 26 70 PF08387.10 FBD Family 1 44 46 43.4 2.2e-11 1 No_clan
Cotton_A_08573_CDS 32 72 31 72 PF08263.12 LRRNT_2 Family 2 41 41 33.3 4.4e-08 1 No_clan
Cotton_A_08573_CDS 97 112 96 114 PF13516.6 LRR_6 Repeat 2 17 24 12.3 0.14 1 CL0022
Cotton_A_08573_CDS 118 156 113 156 PF13855.6 LRR_8 Repeat 23 61 61 33.3 3e-08 1 CL0022
Cotton_A_08573_CDS 169 191 169 191 PF00560.33 LRR_1 Repeat 1 23 23 12.2 0.21 1 CL0022
Cotton_A_08573_CDS 415 686 413 686 PF07714.17 Pkinase_Tyr Domain 3 259 259 143.7 5.9e-42 1 CL0016
Cotton_A_37202_CDS 19 89 19 89 PF11976.8 Rad60-SLD Family 1 72 72 88.2 2.3e-25 1 CL0072
Cotton_A_28596_CDS 101 124 80 124 PF00400.32 WD40 Repeat 15 38 38 14.3 0.058 1 CL0186
Cotton_A_28596_CDS 128 167 128 167 PF00400.32 WD40 Repeat 1 38 38 19.4 0.0014 1 CL0186
Cotton_A_08687_CDS 96 172 96 172 PF11523.8 DUF3223 Family 1 75 75 91.5 4.6e-26 1 No_clan
Cotton_A_15371_CDS 17 114 16 164 PF00651.31 BTB Domain 2 80 111 52.9 3.6e-14 1 CL0033
Cotton_A_15371_CDS 200 266 200 266 PF11900.8 DUF3420 Repeat 1 47 47 44.6 1.2e-11 1 CL0465
Cotton_A_15371_CDS 272 354 265 355 PF12796.7 Ank_2 Repeat 8 82 83 46.3 4.8e-12 1 CL0465
Cotton_A_19644_CDS 55 158 55 158 PF00011.21 HSP20 Family 1 102 102 109.7 6.8e-32 1 CL0190
Cotton_A_13478_CDS 37 264 11 264 PF01201.22 Ribosomal_S8e Family 3 137 137 161.7 1e-47 1 No_clan
Cotton_A_12928_CDS 84 498 29 506 PF00067.22 p450 Domain 46 454 463 233.4 4.4e-69 1 No_clan
Cotton_A_25929_CDS 33 151 31 155 PF01417.20 ENTH Domain 3 121 125 99.8 1e-28 1 CL0009
Cotton_A_24777_CDS 89 142 87 143 PF00046.29 Homeodomain Domain 3 56 57 63.1 1.6e-17 1 CL0123
Cotton_A_24777_CDS 144 186 144 186 PF02183.18 HALZ Coiled-coil 1 43 43 47.5 1.5e-12 1 No_clan
Cotton_A_10738_CDS 33 279 32 280 PF14498.6 Glyco_hyd_65N_2 Domain 2 236 237 213.4 4.1e-63 1 CL0103
Cotton_A_39427_CDS 96 198 96 222 PF00107.26 ADH_zinc_N Family 1 107 130 42.7 5.1e-11 1 CL0063
Cotton_A_01031_CDS 4 72 3 74 PF04564.15 U-box Domain 2 69 73 56.2 2.9e-15 1 CL0229
Cotton_A_20485_CDS 19 145 6 149 PF03055.15 RPE65 Family 48 150 463 78.1 8e-22 1 No_clan
Cotton_A_20485_CDS 152 239 145 255 PF03055.15 RPE65 Family 196 289 463 68.0 9.2e-19 1 No_clan
Cotton_A_09104_CDS 4 98 4 99 PF00173.28 Cyt-b5 Domain 1 73 74 61.1 8.5e-17 1 No_clan
Cotton_A_25674_CDS 263 690 260 693 PF01432.20 Peptidase_M3 Family 4 454 458 323.6 2.8e-96 1 CL0126
Cotton_A_12727_CDS 35 200 35 200 PF10354.9 DUF2431 Domain 1 168 168 172.3 1e-50 1 CL0063
Cotton_A_08627_CDS 355 586 354 586 PF00149.28 Metallophos Domain 2 204 204 42.4 1.1e-10 1 CL0163
Cotton_A_29916_CDS 20 149 20 150 PF01467.26 CTP_transf_like Domain 1 142 143 116.8 8.2e-34 1 CL0039
Cotton_A_34680_CDS 40 102 40 102 PF00462.24 Glutaredoxin Domain 1 60 60 69.3 2.4e-19 1 CL0172
Cotton_A_08275_CDS 6 80 5 80 PF07765.12 KIP1 Family 1 74 74 116.7 3.6e-34 1 No_clan
Cotton_A_11462_CDS 8 159 7 159 PF04690.13 YABBY Family 2 162 162 234.5 8.9e-70 1 CL0114
Cotton_A_13515_CDS 44 116 11 116 PF14368.6 LTP_2 Family 23 97 97 41.0 1.5e-10 1 CL0482
Cotton_A_24908_CDS 17 152 17 152 PF00237.19 Ribosomal_L22 Domain 1 103 103 143.9 1.6e-42 1 No_clan
Cotton_A_20860_CDS 14 86 11 86 PF05770.11 Ins134_P3_kin Domain 4 76 201 101.3 4.9e-29 1 CL0179
Cotton_A_14844_CDS 5 49 5 50 PF12515.8 CaATP_NAI Family 1 44 45 71.0 4.5e-20 1 No_clan
Cotton_A_14844_CDS 217 296 200 297 PF13246.6 Cation_ATPase Family 10 90 91 68.0 5.8e-19 1 CL0137
Cotton_A_14844_CDS 443 500 440 505 PF08282.12 Hydrolase_3 Domain 194 249 255 22.7 6.9e-05 1 CL0137
Cotton_A_14844_CDS 544 718 543 718 PF00689.21 Cation_ATPase_C Family 2 182 182 145.6 1.3e-42 1 No_clan
Cotton_A_32276_CDS 16 166 16 181 PF05623.12 DUF789 Family 1 171 294 113.2 1.9e-32 1 No_clan
Cotton_A_32276_CDS 217 282 196 282 PF05623.12 DUF789 Family 229 294 294 52.9 4.1e-14 1 No_clan
Cotton_A_11433_CDS 11 53 10 55 PF00319.18 SRF-TF Domain 2 45 48 53.6 1.1e-14 1 No_clan
Cotton_A_35315_CDS 90 244 89 249 PF13301.6 DUF4079 Family 2 121 141 145.6 1e-42 1 No_clan
Cotton_A_06054_CDS 90 252 45 254 PF13489.6 Methyltransf_23 Domain 21 163 165 55.3 7e-15 1 CL0063
Cotton_A_35802_CDS 1 60 1 60 PF04852.12 DUF640 Family 67 126 126 95.5 2.5e-27 1 No_clan
Cotton_A_13215_CDS 14 275 14 275 PF00069.25 Pkinase Domain 1 264 264 206.7 4.1e-61 1 CL0016
Cotton_A_03631_CDS 120 219 120 219 PF08414.10 NADPH_Ox Family 1 101 101 122.4 8.3e-36 1 CL0220
Cotton_A_03631_CDS 379 536 378 536 PF01794.19 Ferric_reduct Family 2 125 125 75.9 2.9e-21 1 CL0328
Cotton_A_03631_CDS 579 695 577 696 PF08022.12 FAD_binding_8 Domain 3 108 109 116.1 7.2e-34 1 CL0076
Cotton_A_03631_CDS 702 889 702 890 PF08030.12 NAD_binding_6 Domain 1 155 156 173.1 4.5e-51 1 CL0091
Cotton_A_24832_CDS 1 84 1 85 PF01486.17 K-box Family 9 92 93 96.5 7.5e-28 1 No_clan
Cotton_A_14574_CDS 15 278 15 279 PF01411.19 tRNA-synt_2c Family 1 257 552 388.4 5.2e-116 1 CL0040
Cotton_A_18275_CDS 22 99 21 99 PF18290.1 Nudix_hydro Domain 2 80 80 110.6 2.7e-32 1 No_clan
Cotton_A_18275_CDS 112 217 111 226 PF00293.28 NUDIX Domain 2 108 131 61.4 8.4e-17 1 CL0261
Cotton_A_14319_CDS 31 326 7 328 PF00225.23 Kinesin Domain 35 331 333 353.2 1.1e-105 1 CL0023
Cotton_A_27144_CDS 6 138 6 138 PF01878.18 EVE Domain 1 145 145 145.8 9e-43 1 CL0178
Cotton_A_22209_CDS 15 76 14 79 PF00191.20 Annexin Family 2 63 66 79.2 1.8e-22 1 No_clan
Cotton_A_22209_CDS 91 151 86 151 PF00191.20 Annexin Family 6 66 66 51.1 1e-13 1 No_clan
Cotton_A_22209_CDS 170 227 169 233 PF00191.20 Annexin Family 2 59 66 39.5 4.4e-10 1 No_clan
Cotton_A_22209_CDS 244 309 244 309 PF00191.20 Annexin Family 1 66 66 66.0 2.3e-18 1 No_clan
Cotton_A_22730_CDS 479 872 475 873 PF02181.23 FH2 Family 6 371 372 403.2 1.1e-120 1 No_clan
Cotton_A_03502_CDS 2 76 1 98 PF04398.12 DUF538 Family 16 93 112 33.0 6.5e-08 1 No_clan
Cotton_A_12860_CDS 23 140 22 140 PF00967.17 Barwin Domain 2 119 119 193.6 7.4e-58 1 CL0199
Cotton_A_31814_CDS 1 91 1 93 PF03195.14 LOB Family 7 97 99 115.4 1.4e-33 1 No_clan
Cotton_A_40376_CDS 27 88 10 88 PF00025.21 Arf Domain 108 170 175 68.4 5.1e-19 1 CL0023
Cotton_A_24260_CDS 18 266 17 267 PF00149.28 Metallophos Domain 2 203 204 48.2 1.8e-12 1 CL0163
Cotton_A_22779_CDS 34 90 34 90 PF08246.12 Inhibitor_I29 Domain 2 58 58 61.8 6.2e-17 1 No_clan
Cotton_A_39505_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 45.5 6.1e-12 1 CL0123
Cotton_A_39505_CDS 67 110 67 112 PF00249.31 Myb_DNA-binding Domain 1 44 46 60.2 1.6e-16 1 CL0123
Cotton_A_21222_CDS 58 318 55 321 PF07714.17 Pkinase_Tyr Domain 4 256 259 143.7 5.9e-42 1 CL0016
Cotton_A_09922_CDS 1 214 1 214 PF07279.11 DUF1442 Family 1 218 218 314.3 3.3e-94 1 CL0063
Cotton_A_32368_CDS 1 265 1 265 PF06217.12 GAGA_bind Domain 29 295 295 297.7 1.7e-88 1 No_clan
Cotton_A_03147_CDS 15 49 15 53 PF02736.19 Myosin_N Domain 1 35 40 40.2 2.2e-10 1 CL0010
Cotton_A_03147_CDS 69 725 69 725 PF00063.21 Myosin_head Domain 1 677 677 851.3 4.6e-256 1 CL0023
Cotton_A_03147_CDS 742 760 741 761 PF00612.27 IQ Motif 2 20 21 14.7 0.02 1 CL0220
Cotton_A_03147_CDS 764 779 764 784 PF00612.27 IQ Motif 1 16 21 16.2 0.0063 1 CL0220
Cotton_A_03147_CDS 790 808 789 809 PF00612.27 IQ Motif 2 20 21 15.9 0.0081 1 CL0220
Cotton_A_03147_CDS 837 857 837 857 PF00612.27 IQ Motif 1 21 21 13.6 0.042 1 CL0220
Cotton_A_21848_CDS 85 172 84 180 PF01453.24 B_lectin Domain 2 92 105 80.4 1.2e-22 1 No_clan
Cotton_A_21848_CDS 245 311 232 311 PF00954.20 S_locus_glycop Domain 45 111 111 63.0 3.2e-17 1 No_clan
Cotton_A_21848_CDS 390 478 388 486 PF13947.6 GUB_WAK_bind Domain 3 90 106 37.2 4e-09 1 No_clan
Cotton_A_21848_CDS 658 925 655 927 PF07714.17 Pkinase_Tyr Domain 4 257 259 156.5 7.5e-46 1 CL0016
Cotton_A_03754_CDS 31 74 30 74 PF08263.12 LRRNT_2 Family 2 41 41 23.2 6.2e-05 1 No_clan
Cotton_A_36668_CDS 11 138 11 139 PF12165.8 Alfin Family 1 126 127 226.8 4.3e-68 1 No_clan
Cotton_A_36668_CDS 200 248 199 249 PF00628.29 PHD Domain 2 51 52 41.1 1.2e-10 1 CL0390
Cotton_A_29703_CDS 43 124 41 124 PF01388.21 ARID Domain 5 90 90 65.8 4.2e-18 1 CL0123
Cotton_A_29703_CDS 246 313 246 313 PF00505.19 HMG_box Domain 1 69 69 46.4 3.8e-12 1 CL0114
Cotton_A_36257_CDS 145 312 132 313 PF13419.6 HAD_2 Family 13 177 178 69.6 3.4e-19 1 CL0137
Cotton_A_22043_CDS 30 79 29 79 PF08700.11 Vps51 Family 2 51 87 40.9 1.6e-10 1 CL0295
Cotton_A_06134_CDS 68 124 68 125 PF00847.20 AP2 Domain 1 53 54 31.1 2e-07 1 CL0081
Cotton_A_06134_CDS 167 218 167 219 PF00847.20 AP2 Domain 1 53 54 42.6 5.1e-11 1 CL0081
Cotton_A_07378_CDS 4 80 1 84 PF13456.6 RVT_3 Domain 40 120 124 41.0 1.5e-10 1 CL0219
Cotton_A_15919_CDS 19 87 16 92 PF13417.6 GST_N_3 Domain 6 74 75 62.0 5.2e-17 1 CL0172
Cotton_A_15919_CDS 116 184 113 185 PF13410.6 GST_C_2 Domain 4 68 69 35.9 5.5e-09 1 CL0497
Cotton_A_19749_CDS 128 216 128 245 PF14551.6 MCM_N Domain 1 86 104 35.8 9.3e-09 1 No_clan
Cotton_A_19749_CDS 230 359 229 360 PF17207.3 MCM_OB Domain 2 125 126 130.9 2.2e-38 1 CL0021
Cotton_A_19749_CDS 419 641 418 641 PF00493.23 MCM Domain 2 224 224 333.8 3.3e-100 1 CL0023
Cotton_A_19749_CDS 657 743 656 744 PF17855.1 MCM_lid Domain 2 86 87 96.4 9.7e-28 1 CL0671
Cotton_A_08613_CDS 55 459 54 461 PF00860.20 Xan_ur_permease Family 2 387 389 214.9 1.4e-63 1 CL0062
Cotton_A_07051_CDS 1 102 1 104 PF03660.14 PHF5 Family 1 102 104 166.5 1.6e-49 1 No_clan
Cotton_A_21914_CDS 5 76 3 76 PF02798.20 GST_N Domain 3 76 76 71.4 5.8e-20 1 CL0172
Cotton_A_21914_CDS 122 188 97 188 PF13410.6 GST_C_2 Domain 5 69 69 44.6 1.1e-11 1 CL0497
Cotton_A_07287_CDS 156 437 155 439 PF03016.15 Exostosin Family 2 298 300 192.5 9.1e-57 1 No_clan
Cotton_A_04815_CDS 46 154 9 154 PF04885.13 Stig1 Family 34 139 139 144.5 2.9e-42 1 No_clan
Cotton_A_12525_CDS 74 220 74 220 PF13365.6 Trypsin_2 Domain 1 150 150 61.4 1.8e-16 1 CL0124
Cotton_A_12525_CDS 295 366 281 368 PF13180.6 PDZ_2 Domain 12 80 82 27.4 3.2e-06 1 CL0466
Cotton_A_12525_CDS 373 446 373 448 PF12812.7 PDZ_1 Domain 1 75 78 56.7 1.7e-15 1 CL0466
Cotton_A_12525_CDS 981 1057 980 1058 PF12812.7 PDZ_1 Domain 4 77 78 35.0 1e-08 1 CL0466
Cotton_A_11134_CDS 4 690 4 691 PF06075.12 DUF936 Family 1 691 692 651.8 1.9e-195 1 No_clan
Cotton_A_12077_CDS 214 262 214 263 PF13041.6 PPR_2 Repeat 1 49 50 55.7 4.2e-15 1 CL0020
Cotton_A_12077_CDS 393 418 392 421 PF01535.20 PPR Family 2 27 31 12.9 0.099 1 CL0020
Cotton_A_12077_CDS 426 456 424 456 PF12854.7 PPR_1 Repeat 4 34 34 30.5 2.2e-07 1 CL0020
Cotton_A_12077_CDS 463 510 462 512 PF13041.6 PPR_2 Repeat 2 48 50 52.5 4e-14 1 CL0020
Cotton_A_12077_CDS 536 563 536 565 PF01535.20 PPR Family 1 28 31 22.4 9.3e-05 1 CL0020
Cotton_A_12077_CDS 570 616 569 618 PF13041.6 PPR_2 Repeat 2 48 50 47.1 1.9e-12 1 CL0020
Cotton_A_13768_CDS 55 106 54 108 PF00646.33 F-box Domain 3 46 48 39.8 2.9e-10 1 CL0271
Cotton_A_13768_CDS 118 388 118 388 PF01167.18 Tub Domain 1 241 241 291.1 7.5e-87 1 CL0395
Cotton_A_16977_CDS 200 246 195 247 PF04570.14 zf-FLZ Domain 7 53 54 69.6 1.1e-19 1 CL0175
Cotton_A_10981_CDS 130 210 129 210 PF00288.26 GHMP_kinases_N Family 2 66 66 69.6 2e-19 1 CL0329
Cotton_A_10981_CDS 292 344 284 348 PF08544.13 GHMP_kinases_C Family 11 66 85 30.6 3.3e-07 1 CL0677
Cotton_A_13121_CDS 1 67 1 68 PF03760.15 LEA_1 Family 4 70 71 76.6 1.8e-21 1 No_clan
Cotton_A_16724_CDS 1 191 1 199 PF02705.16 K_trans Family 334 525 534 169.0 1.4e-49 1 CL0062
Cotton_A_02499_CDS 56 177 55 181 PF00581.20 Rhodanese Domain 2 102 107 34.5 2.3e-08 1 CL0031
Cotton_A_37315_CDS 34 200 34 203 PF13419.6 HAD_2 Family 1 175 178 62.5 5.4e-17 1 CL0137
Cotton_A_04593_CDS 54 328 50 330 PF00246.24 Peptidase_M14 Domain 5 287 289 104.0 1.3e-29 1 CL0035
Cotton_A_17410_CDS 51 136 23 142 PF02309.16 AUX_IAA Family 79 165 237 67.8 1.3e-18 1 CL0072
Cotton_A_17410_CDS 141 177 137 182 PF02309.16 AUX_IAA Family 193 229 237 39.1 7.3e-10 1 CL0072
Cotton_A_07370_CDS 9 80 9 81 PF00173.28 Cyt-b5 Domain 1 73 74 98.6 1.6e-28 1 No_clan
Cotton_A_06267_CDS 47 206 47 207 PF01554.18 MatE Family 1 160 161 99.6 1.3e-28 1 CL0222
Cotton_A_06267_CDS 268 429 268 431 PF01554.18 MatE Family 1 159 161 84.9 4.5e-24 1 CL0222
Cotton_A_10203_CDS 138 280 106 283 PF00929.24 RNase_T Family 23 162 165 22.0 0.0002 1 CL0219
Cotton_A_25343_CDS 5 59 4 60 PF13855.6 LRR_8 Repeat 6 60 61 29.1 6.2e-07 1 CL0022
Cotton_A_25343_CDS 174 406 172 479 PF00069.25 Pkinase Domain 3 212 264 146.3 1e-42 1 CL0016
Cotton_A_08843_CDS 68 190 67 195 PF00892.20 EamA Family 2 120 137 33.4 4.4e-08 1 CL0184
Cotton_A_36171_CDS 64 172 41 191 PF00156.27 Pribosyltran Domain 28 127 159 63.5 1.6e-17 1 CL0533
Cotton_A_06110_CDS 77 284 77 285 PF01734.22 Patatin Family 1 203 204 72.7 4.6e-20 1 CL0323
Cotton_A_08774_CDS 24 90 20 100 PF00564.24 PB1 Domain 6 70 84 24.5 2e-05 1 CL0072
Cotton_A_08774_CDS 174 237 171 237 PF03108.15 DBD_Tnp_Mut Family 4 67 67 55.4 4.4e-15 1 CL0274
Cotton_A_08774_CDS 366 457 365 459 PF10551.9 MULE Domain 2 94 96 57.2 1.7e-15 1 CL0219
Cotton_A_08774_CDS 620 649 600 650 PF04434.17 SWIM Domain 10 39 40 38.7 5.6e-10 1 No_clan
Cotton_A_02193_CDS 114 494 58 498 PF00083.24 Sugar_tr Family 44 444 452 77.5 9.4e-22 1 CL0015
Cotton_A_38451_CDS 13 38 13 39 PF05678.14 VQ Motif 1 26 28 39.6 2.5e-10 1 No_clan
Cotton_A_07423_CDS 33 121 32 132 PF03062.19 MBOAT Family 2 122 348 54.4 1.2e-14 1 CL0517
Cotton_A_31224_CDS 51 163 50 212 PF01926.23 MMR_HSR1 Family 2 87 114 79.6 1.7e-22 1 CL0023
Cotton_A_31224_CDS 332 415 332 415 PF06071.13 YchF-GTPase_C Domain 1 84 84 130.7 1.7e-38 1 CL0072
Cotton_A_06843_CDS 6 180 6 180 PF05063.14 MT-A70 Family 1 172 172 110.4 8.9e-32 1 CL0063
Cotton_A_08483_CDS 50 381 50 381 PF01148.20 CTP_transf_1 Family 1 266 266 282.7 3.6e-84 1 CL0234
Cotton_A_22362_CDS 129 294 128 294 PF04727.13 ELMO_CED12 Family 2 177 177 160.8 3.5e-47 1 No_clan
Cotton_A_21908_CDS 75 477 75 504 PF13520.6 AA_permease_2 Family 1 403 425 168.7 1.8e-49 1 CL0062
Cotton_A_21908_CDS 513 562 513 563 PF13906.6 AA_permease_C Domain 1 50 51 47.5 1.4e-12 1 CL0062
Cotton_A_23657_CDS 7 118 6 118 PF13881.6 Rad60-SLD_2 Domain 2 111 111 124.2 2.4e-36 1 CL0072
Cotton_A_20341_CDS 57 299 53 307 PF00139.19 Lectin_legB Domain 5 238 249 177.3 3.9e-52 1 CL0004
Cotton_A_20341_CDS 404 577 401 652 PF07714.17 Pkinase_Tyr Domain 4 199 259 76.8 1.5e-21 1 CL0016
Cotton_A_08853_CDS 27 140 8 140 PF00106.25 adh_short Domain 49 160 195 74.8 5.9e-21 1 CL0063
Cotton_A_26969_CDS 15 51 14 59 PF07647.17 SAM_2 Domain 4 41 66 34.6 1.6e-08 1 CL0003
Cotton_A_35309_CDS 12 171 12 173 PF00071.22 Ras Domain 1 160 162 195.0 6.1e-58 1 CL0023
Cotton_A_39045_CDS 136 298 135 298 PF03031.18 NIF Family 2 156 156 171.8 8.3e-51 1 CL0137
Cotton_A_30922_CDS 65 228 64 228 PF14543.6 TAXi_N Domain 3 178 178 129.3 1.8e-37 1 CL0129
Cotton_A_30922_CDS 256 423 256 424 PF14541.6 TAXi_C Domain 1 160 161 127.9 3.1e-37 1 CL0129
Cotton_A_01653_CDS 202 293 197 322 PF08268.12 FBA_3 Domain 6 96 128 29.7 5.1e-07 1 CL0162
Cotton_A_04771_CDS 310 443 280 488 PF00201.18 UDPGT Family 263 381 499 74.1 1e-20 1 CL0113
Cotton_A_33910_CDS 9 171 8 172 PF05078.12 DUF679 Family 2 162 163 175.5 8.1e-52 1 No_clan
Cotton_A_30127_CDS 47 102 47 102 PF08246.12 Inhibitor_I29 Domain 1 58 58 51.1 1.4e-13 1 No_clan
Cotton_A_30127_CDS 133 347 133 348 PF00112.23 Peptidase_C1 Domain 1 217 218 271.1 9.3e-81 1 CL0125
Cotton_A_05895_CDS 85 144 84 144 PF02427.17 PSI_PsaE Domain 2 60 60 101.4 1.6e-29 1 CL0610
Cotton_A_22405_CDS 95 308 95 309 PF07859.13 Abhydrolase_3 Domain 1 210 211 197.0 3.3e-58 1 CL0028
Cotton_A_15858_CDS 58 215 55 218 PF00160.21 Pro_isomerase Domain 4 155 158 159.3 8.9e-47 1 CL0475
Cotton_A_17445_CDS 6 32 4 33 PF00641.18 zf-RanBP Domain 3 29 30 21.6 0.0001 1 CL0167
Cotton_A_17445_CDS 49 77 49 79 PF00641.18 zf-RanBP Domain 2 28 30 29.7 2.9e-07 1 CL0167
Cotton_A_17445_CDS 97 126 97 127 PF00641.18 zf-RanBP Domain 1 28 30 31.0 1.1e-07 1 CL0167
Cotton_A_35660_CDS 6 68 6 68 PF00226.31 DnaJ Domain 1 63 63 84.9 3.1e-24 1 CL0392
Cotton_A_35660_CDS 141 342 141 344 PF14308.6 DnaJ-X Domain 1 207 211 151.3 2.3e-44 1 No_clan
Cotton_A_19102_CDS 2 73 1 74 PF03763.13 Remorin_C Family 26 97 107 48.9 4.9e-13 1 No_clan
Cotton_A_25833_CDS 10 57 10 57 PF00319.18 SRF-TF Domain 1 48 48 92.3 8.9e-27 1 No_clan
Cotton_A_02898_CDS 17 42 17 42 PF05678.14 VQ Motif 1 26 28 38.0 8e-10 1 No_clan
Cotton_A_15763_CDS 5 70 5 70 PF10247.9 Romo1 Family 1 66 66 78.1 4.8e-22 1 CL0500
Cotton_A_34423_CDS 36 96 18 99 PF15511.6 CENP-T_C Domain 19 79 108 34.4 1.8e-08 1 CL0012
Cotton_A_21518_CDS 45 168 35 171 PF13883.6 Pyrid_oxidase_2 Domain 11 155 170 50.1 2.9e-13 1 CL0336
Cotton_A_21518_CDS 198 271 197 271 PF10615.9 DUF2470 Family 2 77 77 51.2 1.5e-13 1 No_clan
Cotton_A_14497_CDS 59 151 51 154 PF14226.6 DIOX_N Family 16 116 118 60.7 2.1e-16 1 CL0029
Cotton_A_14497_CDS 208 302 203 303 PF03171.20 2OG-FeII_Oxy Domain 6 100 101 91.4 4.1e-26 1 CL0029
Cotton_A_41253_CDS 35 162 34 163 PF08240.12 ADH_N Domain 2 108 109 82.7 1.5e-23 1 CL0296
Cotton_A_22719_CDS 11 87 11 92 PF13456.6 RVT_3 Domain 1 75 124 30.5 2.5e-07 1 CL0219
Cotton_A_02720_CDS 55 540 54 541 PF00982.21 Glyco_transf_20 Family 2 473 474 599.3 4.7e-180 1 CL0113
Cotton_A_02720_CDS 590 819 590 821 PF02358.16 Trehalose_PPase Family 1 231 233 228.5 5.9e-68 1 CL0137
Cotton_A_07348_CDS 131 598 130 599 PF03055.15 RPE65 Family 2 462 463 355.2 6.9e-106 1 No_clan
Cotton_A_02975_CDS 22 85 22 85 PF00462.24 Glutaredoxin Domain 1 60 60 63.5 1.6e-17 1 CL0172
Cotton_A_28841_CDS 61 111 61 112 PF00847.20 AP2 Domain 1 53 54 49.9 2.7e-13 1 CL0081
Cotton_A_21603_CDS 158 316 158 318 PF14543.6 TAXi_N Domain 1 175 178 167.1 4.4e-49 1 CL0129
Cotton_A_21603_CDS 339 490 339 491 PF14541.6 TAXi_C Domain 1 160 161 139.7 6.8e-41 1 CL0129
Cotton_A_18594_CDS 6 207 4 207 PF07847.12 PCO_ADO Family 3 201 201 247.1 1e-73 1 CL0029
Cotton_A_00864_CDS 2 83 1 83 PF00447.17 HSF_DNA-bind Domain 9 96 96 92.6 1.8e-26 1 CL0123
Cotton_A_14459_CDS 10 65 10 66 PF00412.22 LIM Domain 1 57 58 38.2 1.2e-09 1 CL0167
Cotton_A_14459_CDS 105 160 105 161 PF00412.22 LIM Domain 1 57 58 44.2 1.7e-11 1 CL0167
Cotton_A_32062_CDS 31 107 31 168 PF02469.22 Fasciclin Domain 1 76 128 30.6 3.3e-07 1 No_clan
Cotton_A_32062_CDS 194 322 192 322 PF02469.22 Fasciclin Domain 3 128 128 52.3 6.3e-14 1 No_clan
Cotton_A_04551_CDS 71 141 71 141 PF00076.22 RRM_1 Domain 1 70 70 73.0 1.3e-20 1 CL0221
Cotton_A_04551_CDS 171 234 171 237 PF00076.22 RRM_1 Domain 1 63 70 57.7 7.8e-16 1 CL0221
Cotton_A_21264_CDS 48 202 47 203 PF02453.17 Reticulon Family 2 156 157 156.5 5.1e-46 1 CL0484
Cotton_A_22332_CDS 44 210 43 217 PF02776.18 TPP_enzyme_N Domain 2 163 172 120.2 6.9e-35 1 CL0254
Cotton_A_22332_CDS 241 357 241 374 PF00205.22 TPP_enzyme_M Domain 1 117 137 71.6 5.1e-20 1 CL0085
Cotton_A_22332_CDS 452 576 429 576 PF02775.21 TPP_enzyme_C Domain 25 153 153 53.0 3.1e-14 1 CL0254
Cotton_A_37775_CDS 33 173 33 174 PF02518.26 HATPase_c Domain 1 111 112 41.2 2e-10 1 CL0025
Cotton_A_37775_CDS 176 410 176 411 PF00183.18 HSP90 Family 1 241 517 375.0 6.9e-112 1 No_clan
Cotton_A_37775_CDS 410 646 410 649 PF00183.18 HSP90 Family 280 515 517 308.8 7.9e-92 1 No_clan
Cotton_A_30040_CDS 217 261 217 261 PF12552.8 DUF3741 Family 1 45 45 53.6 1.5e-14 1 No_clan
Cotton_A_30040_CDS 763 906 761 908 PF14309.6 DUF4378 Family 5 163 165 63.6 2.7e-17 1 No_clan
Cotton_A_33167_CDS 28 133 27 133 PF13947.6 GUB_WAK_bind Domain 2 106 106 90.5 1e-25 1 No_clan
Cotton_A_33167_CDS 162 272 161 274 PF08488.11 WAK Family 2 101 103 22.7 0.00011 1 No_clan
Cotton_A_33167_CDS 419 685 419 689 PF00069.25 Pkinase Domain 1 258 264 167.6 3.3e-49 1 CL0016
Cotton_A_32522_CDS 29 318 29 327 PF00124.19 Photo_RC Family 1 256 260 253.8 1.5e-75 1 No_clan
Cotton_A_02314_CDS 11 58 5 58 PF02186.15 TFIIE_beta Domain 16 68 68 31.4 1.7e-07 1 CL0123
Cotton_A_02314_CDS 59 116 59 116 PF18121.1 TFA2_Winged_2 Domain 1 61 61 56.9 1.2e-15 1 CL0123
Cotton_A_28515_CDS 4 85 2 86 PF00276.20 Ribosomal_L23 Family 3 84 86 68.0 6.8e-19 1 No_clan
Cotton_A_05734_CDS 116 424 113 424 PF03016.15 Exostosin Family 4 300 300 260.4 1.9e-77 1 No_clan
Cotton_A_20152_CDS 9 79 9 79 PF08523.10 MBF1 Family 1 72 72 80.1 1.2e-22 1 No_clan
Cotton_A_20152_CDS 87 137 87 140 PF01381.22 HTH_3 Domain 1 51 55 40.9 1.5e-10 1 CL0123
Cotton_A_18608_CDS 27 198 27 198 PF16974.5 NAR2 Family 1 174 174 268.3 2e-80 1 No_clan
Cotton_A_18405_CDS 74 250 4 251 PF04614.12 Pex19 Family 65 243 244 132.0 3e-38 1 No_clan
Cotton_A_34378_CDS 6 42 5 42 PF14369.6 zinc_ribbon_9 Domain 2 35 35 45.3 7.5e-12 1 CL0167
Cotton_A_35156_CDS 241 297 236 299 PF13432.6 TPR_16 Family 7 66 68 25.5 1.5e-05 1 CL0020
Cotton_A_35156_CDS 504 535 502 535 PF00515.28 TPR_1 Repeat 3 34 34 32.5 4.8e-08 1 CL0020
Cotton_A_35156_CDS 607 690 601 699 PF00085.20 Thioredoxin Domain 8 93 103 43.1 3.1e-11 1 CL0172
Cotton_A_21267_CDS 21 64 6 73 PF01591.18 6PF2K Domain 156 200 223 27.2 2.1e-06 1 CL0023
Cotton_A_20022_CDS 111 855 111 855 PF00343.20 Phosphorylase Family 1 711 711 970.6 4.5e-292 1 CL0113
Cotton_A_22356_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 54.7 8.1e-15 1 CL0123
Cotton_A_22356_CDS 67 112 67 112 PF00249.31 Myb_DNA-binding Domain 1 46 46 47.1 2e-12 1 CL0123
AT1G05010.1-D6_CDS 5 78 4 91 PF14226.6 DIOX_N Family 2 76 118 44.6 2.1e-11 1 CL0029
AT1G05010.1-D6_CDS 206 251 202 251 PF03171.20 2OG-FeII_Oxy Domain 55 101 101 39.7 5.3e-10 1 CL0029
Cotton_A_17939_CDS 10 84 10 84 PF12609.8 DUF3774 Family 1 74 74 71.8 7.4e-20 1 No_clan
Cotton_A_01283_CDS 57 101 57 102 PF00249.31 Myb_DNA-binding Domain 1 45 46 39.8 3.7e-10 1 CL0123
Cotton_A_29216_CDS 24 241 24 249 PF02358.16 Trehalose_PPase Family 1 222 233 222.0 5.8e-66 1 CL0137
Cotton_A_21346_CDS 134 356 127 357 PF12146.8 Hydrolase_4 Family 21 238 239 176.4 5.7e-52 1 CL0028
Cotton_A_20329_CDS 121 135 119 136 PF07145.15 PAM2 Motif 3 17 18 23.6 2.6e-05 1 No_clan
Cotton_A_20329_CDS 215 269 213 274 PF00076.22 RRM_1 Domain 9 65 70 35.1 8.5e-09 1 CL0221
Cotton_A_04604_CDS 39 107 39 108 PF00505.19 HMG_box Domain 1 68 69 83.8 8e-24 1 CL0114
Cotton_A_04788_CDS 14 148 13 149 PF01042.21 Ribonuc_L-PSP Domain 2 120 121 48.3 9e-13 1 CL0534
Cotton_A_26657_CDS 100 212 100 212 PF01661.21 Macro Domain 1 118 118 90.5 7.7e-26 1 CL0223
Cotton_A_26657_CDS 406 537 406 539 PF13716.6 CRAL_TRIO_2 Domain 1 136 138 106.1 1.5e-30 1 CL0512
Cotton_A_13263_CDS 101 127 99 128 PF01535.20 PPR Family 3 29 31 14.3 0.036 1 CL0020
Cotton_A_13263_CDS 185 232 183 232 PF13041.6 PPR_2 Repeat 3 50 50 44.4 1.4e-11 1 CL0020
Cotton_A_13263_CDS 254 302 253 302 PF13041.6 PPR_2 Repeat 2 50 50 63.5 1.5e-17 1 CL0020
Cotton_A_13263_CDS 320 351 319 352 PF12854.7 PPR_1 Repeat 2 33 34 33.3 2.8e-08 1 CL0020
Cotton_A_13263_CDS 358 407 358 407 PF13041.6 PPR_2 Repeat 1 50 50 52.8 3.3e-14 1 CL0020
Cotton_A_13263_CDS 429 477 428 477 PF13041.6 PPR_2 Repeat 2 50 50 66.0 2.5e-18 1 CL0020
Cotton_A_13263_CDS 498 547 498 547 PF13041.6 PPR_2 Repeat 1 50 50 58.0 7.9e-16 1 CL0020
Cotton_A_13263_CDS 564 597 564 597 PF12854.7 PPR_1 Repeat 1 34 34 33.3 2.8e-08 1 CL0020
Cotton_A_13263_CDS 603 652 603 652 PF13041.6 PPR_2 Repeat 1 50 50 61.0 8.8e-17 1 CL0020
Cotton_A_13263_CDS 669 702 669 702 PF12854.7 PPR_1 Repeat 1 34 34 29.4 4.8e-07 1 CL0020
Cotton_A_21823_CDS 23 131 18 132 PF00583.25 Acetyltransf_1 Family 6 115 117 57.2 1.7e-15 1 CL0257
Cotton_A_21010_CDS 2 102 1 102 PF13359.6 DDE_Tnp_4 Domain 54 158 158 69.5 2.5e-19 1 CL0219
Cotton_A_11689_CDS 37 357 34 371 PF01237.18 Oxysterol_BP Family 2 356 373 184.0 3.7e-54 1 No_clan
Cotton_A_04548_CDS 32 134 31 134 PF00085.20 Thioredoxin Domain 2 103 103 93.3 7.7e-27 1 CL0172
Cotton_A_04548_CDS 189 329 169 352 PF13848.6 Thioredoxin_6 Domain 26 166 184 53.3 3.2e-14 1 CL0172
Cotton_A_15890_CDS 265 304 263 307 PF13920.6 zf-C3HC4_3 Domain 3 46 50 29.9 3.7e-07 1 CL0229
Cotton_A_19376_CDS 8 480 7 499 PF03094.15 Mlo Family 2 457 479 504.4 2.4e-151 1 No_clan
Cotton_A_38928_CDS 47 135 46 136 PF00564.24 PB1 Domain 2 83 84 68.6 3.2e-19 1 CL0072
Cotton_A_29767_CDS 15 81 14 84 PF05477.11 SURF2 Family 2 72 236 63.6 2.1e-17 1 CL0131
Cotton_A_08112_CDS 21 111 21 111 PF00428.19 Ribosomal_60s Family 1 88 88 94.8 3.5e-27 1 No_clan
Cotton_A_29772_CDS 12 115 4 115 PF00069.25 Pkinase Domain 151 264 264 70.2 1.7e-19 1 CL0016
Cotton_A_12157_CDS 364 508 361 508 PF13890.6 Rab3-GTPase_cat Family 4 163 163 167.9 1.4e-49 1 No_clan
Cotton_A_14790_CDS 442 488 440 488 PF00010.26 HLH Domain 4 53 53 51.8 5.9e-14 1 No_clan
Cotton_A_21184_CDS 30 280 30 280 PF02089.15 Palm_thioest Domain 1 242 242 236.8 3.1e-70 1 CL0028
Cotton_A_07279_CDS 52 88 51 101 PF13962.6 PGG Domain 2 38 116 24.8 1.4e-05 1 No_clan
Cotton_A_39984_CDS 5 228 4 228 PF00195.19 Chal_sti_synt_N Domain 2 225 225 416.0 3e-125 1 CL0046
Cotton_A_39984_CDS 238 388 238 388 PF02797.15 Chal_sti_synt_C Domain 1 151 151 242.2 1.9e-72 1 CL0046
Cotton_A_39903_CDS 29 54 8 55 PF03765.15 CRAL_TRIO_N Domain 28 53 54 23.7 4e-05 1 CL0214
Cotton_A_39903_CDS 78 228 75 228 PF00650.20 CRAL_TRIO Domain 4 159 159 141.8 1.5e-41 1 CL0512
Cotton_A_01500_CDS 176 262 176 263 PF03088.16 Str_synth Family 1 88 89 111.1 2.1e-32 1 CL0186
Cotton_A_08522_CDS 106 258 106 259 PF08389.12 Xpo1 Family 1 148 149 122.4 1.5e-35 1 CL0020
Cotton_A_04453_CDS 121 385 120 395 PF01040.18 UbiA Family 2 246 252 154.1 3.9e-45 1 CL0613
Cotton_A_13401_CDS 63 222 62 223 PF00504.21 Chloroa_b-bind Family 2 160 161 161.7 2e-47 1 No_clan
Cotton_A_25966_CDS 201 301 198 304 PF04258.13 Peptidase_A22B Family 7 116 284 49.0 6e-13 1 CL0130
Cotton_A_25966_CDS 302 375 300 379 PF04258.13 Peptidase_A22B Family 160 237 284 57.5 1.5e-15 1 CL0130
Cotton_A_34386_CDS 44 210 44 210 PF14543.6 TAXi_N Domain 1 178 178 112.8 2.1e-32 1 CL0129
Cotton_A_34386_CDS 235 380 234 381 PF14541.6 TAXi_C Domain 2 160 161 145.7 1e-42 1 CL0129
Cotton_A_05923_CDS 484 503 484 504 PF00642.24 zf-CCCH Family 7 26 27 26.9 3.3e-06 1 CL0537
Cotton_A_13183_CDS 4 120 1 120 PF01474.16 DAHP_synth_2 Domain 321 437 437 135.9 1.3e-39 1 CL0036
Cotton_A_01414_CDS 85 372 85 373 PF07887.11 Calmodulin_bind Family 1 291 292 398.2 2.1e-119 1 No_clan
Cotton_A_24012_CDS 248 304 247 305 PF03106.15 WRKY Domain 2 58 59 84.5 4.3e-24 1 CL0274
Cotton_A_02894_CDS 3 44 1 74 PF09032.11 Siah-Interact_N Domain 4 45 78 32.0 1.1e-07 1 No_clan
Cotton_A_02894_CDS 77 153 76 153 PF04969.16 CS Domain 2 76 76 55.6 8e-15 1 CL0190
Cotton_A_19529_CDS 211 253 211 254 PF06203.14 CCT Motif 1 43 44 65.2 4e-18 1 CL0281
Cotton_A_39433_CDS 292 317 292 319 PF00641.18 zf-RanBP Domain 1 26 30 28.8 5.5e-07 1 CL0167
Cotton_A_39433_CDS 336 360 336 360 PF00641.18 zf-RanBP Domain 1 25 30 25.1 8e-06 1 CL0167
Cotton_A_39433_CDS 371 397 370 398 PF00641.18 zf-RanBP Domain 3 29 30 25.3 6.9e-06 1 CL0167
Cotton_A_36402_CDS 8 113 8 114 PF02365.15 NAM Family 1 102 126 92.7 3.3e-26 1 No_clan
Cotton_A_24951_CDS 239 496 237 499 PF03321.13 GH3 Family 280 524 527 299.2 6.4e-89 1 CL0378
Cotton_A_02603_CDS 27 306 27 308 PF12697.7 Abhydrolase_6 Domain 1 218 220 70.0 4.2e-19 1 CL0028
Cotton_A_38712_CDS 108 539 108 544 PF00854.21 PTR2 Family 1 390 395 308.4 6.5e-92 1 CL0015
Cotton_A_15993_CDS 78 360 64 369 PF00481.21 PP2C Family 17 251 258 146.1 1.4e-42 1 CL0238
Cotton_A_07618_CDS 147 269 147 269 PF10497.9 zf-4CXXC_R1 Domain 1 99 99 104.0 3.9e-30 1 No_clan
Cotton_A_05608_CDS 52 322 52 323 PF01650.18 Peptidase_C13 Family 1 255 256 375.9 9.9e-113 1 CL0093
Cotton_A_18054_CDS 4 146 3 146 PF01280.20 Ribosomal_L19e Family 2 144 144 219.4 1.8e-65 1 No_clan
Cotton_A_06364_CDS 670 711 668 711 PF13639.6 zf-RING_2 Domain 3 44 44 41.9 9.4e-11 1 CL0229
Cotton_A_19399_CDS 58 550 57 550 PF02990.16 EMP70 Family 2 519 519 554.3 2.7e-166 1 No_clan
Cotton_A_08057_CDS 36 221 36 222 PF00406.22 ADK Domain 1 150 151 195.1 6.5e-58 1 CL0023
Cotton_A_08057_CDS 158 193 158 193 PF05191.14 ADK_lid Domain 1 36 36 61.3 6.3e-17 1 No_clan
Cotton_A_31894_CDS 58 141 58 149 PF16656.5 Pur_ac_phosph_N Domain 1 84 94 69.4 3e-19 1 CL0159
Cotton_A_31894_CDS 160 358 159 358 PF00149.28 Metallophos Domain 2 204 204 88.8 6.6e-25 1 CL0163
Cotton_A_31894_CDS 384 443 384 445 PF14008.6 Metallophos_C Domain 1 59 63 62.2 6.5e-17 1 No_clan
Cotton_A_05624_CDS 15 112 15 113 PF03195.14 LOB Family 1 98 99 115.1 1.7e-33 1 No_clan
Cotton_A_30111_CDS 3 316 3 316 PF01112.18 Asparaginase_2 Domain 1 306 306 381.8 2e-114 1 CL0052
Cotton_A_01574_CDS 4 42 2 47 PF00643.24 zf-B_box Domain 5 37 42 26.3 6.2e-06 1 No_clan
Cotton_A_03746_CDS 252 274 251 274 PF13516.6 LRR_6 Repeat 2 24 24 13.5 0.056 1 CL0022
Cotton_A_03746_CDS 280 300 276 300 PF13516.6 LRR_6 Repeat 5 24 24 12.5 0.12 1 CL0022
Cotton_A_22903_CDS 264 315 263 316 PF14416.6 PMR5N Domain 2 52 53 77.3 7.9e-22 1 No_clan
Cotton_A_22903_CDS 317 605 317 606 PF13839.6 PC-Esterase Family 1 282 283 341.5 4.8e-102 1 CL0264
Cotton_A_19360_CDS 2788 3126 2786 3127 PF02259.23 FAT Family 3 345 346 144.0 6.6e-42 1 CL0020
Cotton_A_19360_CDS 3544 3790 3536 3791 PF00454.27 PI3_PI4_kinase Family 12 249 250 92.0 5.2e-26 1 CL0016
Cotton_A_38481_CDS 30 294 30 294 PF10269.9 Tmemb_185A Family 1 250 250 321.4 4.4e-96 1 No_clan
Cotton_A_38481_CDS 419 462 418 463 PF13920.6 zf-C3HC4_3 Domain 2 49 50 41.4 9.5e-11 1 CL0229
Cotton_A_13427_CDS 73 209 65 211 PF00190.22 Cupin_1 Domain 9 149 151 142.7 6.3e-42 1 CL0029
Cotton_A_26157_CDS 428 530 425 531 PF03763.13 Remorin_C Family 4 106 107 94.4 3.4e-27 1 No_clan
Cotton_A_38821_CDS 94 142 93 145 PF00847.20 AP2 Domain 2 51 54 45.6 6e-12 1 CL0081
Cotton_A_07062_CDS 46 173 44 174 PF04535.12 DUF588 Domain 3 149 150 88.8 2.9e-25 1 CL0396
Cotton_A_33227_CDS 25 112 25 114 PF05495.12 zf-CHY Domain 1 73 75 55.0 8.4e-15 1 No_clan
Cotton_A_33227_CDS 133 176 132 177 PF13639.6 zf-RING_2 Domain 2 43 44 31.6 1.5e-07 1 CL0229
Cotton_A_33227_CDS 181 239 181 239 PF14599.6 zinc_ribbon_6 Domain 1 59 59 88.1 2.8e-25 1 No_clan
Cotton_A_29094_CDS 77 91 76 92 PF00098.23 zf-CCHC Domain 2 16 18 24.3 2.2e-05 1 CL0511
Cotton_A_23964_CDS 35 163 34 164 PF08240.12 ADH_N Domain 2 108 109 78.5 3.1e-22 1 CL0296
Cotton_A_23964_CDS 206 327 206 339 PF00107.26 ADH_zinc_N Family 1 118 130 84.4 6.2e-24 1 CL0063
Cotton_A_35175_CDS 4 256 4 257 PF00069.25 Pkinase Domain 1 263 264 217.3 2.4e-64 1 CL0016
Cotton_A_36157_CDS 138 419 126 428 PF00295.17 Glyco_hydro_28 Domain 52 320 325 142.4 1.6e-41 1 CL0268
Cotton_A_24018_CDS 51 363 49 363 PF02535.22 Zip Family 3 333 333 242.1 8.9e-72 1 CL0184
Cotton_A_11305_CDS 118 167 117 168 PF00847.20 AP2 Domain 2 52 54 50.4 1.9e-13 1 CL0081
Cotton_A_21263_CDS 30 111 30 111 PF00081.22 Sod_Fe_N Domain 1 82 82 120.0 4.4e-35 1 No_clan
Cotton_A_21263_CDS 121 223 121 225 PF02777.18 Sod_Fe_C Domain 1 100 102 120.3 3.4e-35 1 No_clan
Cotton_A_34733_CDS 26 122 25 123 PF01657.17 Stress-antifung Family 2 94 95 63.6 2e-17 1 No_clan
Cotton_A_34733_CDS 144 236 137 237 PF01657.17 Stress-antifung Family 9 94 95 44.1 2.4e-11 1 No_clan
Cotton_A_34425_CDS 163 207 163 207 PF13639.6 zf-RING_2 Domain 1 44 44 49.4 4.2e-13 1 CL0229
Cotton_A_11206_CDS 110 184 103 185 PF14159.6 CAAD Domain 10 84 85 86.0 1.2e-24 1 No_clan
Cotton_A_27688_CDS 11 54 11 54 PF00010.26 HLH Domain 14 53 53 22.1 0.00011 1 No_clan
Cotton_A_14781_CDS 67 113 67 113 PF03107.16 C1_2 Domain 1 47 47 33.2 4.9e-08 1 CL0006
Cotton_A_14781_CDS 200 247 199 247 PF03107.16 C1_2 Domain 2 47 47 28.9 1.1e-06 1 CL0006
Cotton_A_14781_CDS 347 399 347 399 PF03107.16 C1_2 Domain 1 47 47 26.5 5.8e-06 1 CL0006
Cotton_A_14781_CDS 557 589 556 589 PF00514.23 Arm Repeat 10 41 41 20.9 0.00026 1 CL0020
Cotton_A_14781_CDS 591 630 591 631 PF00514.23 Arm Repeat 1 40 41 35.5 6.5e-09 1 CL0020
Cotton_A_14781_CDS 635 672 634 674 PF00514.23 Arm Repeat 2 39 41 30.6 2.3e-07 1 CL0020
Cotton_A_14781_CDS 689 727 689 727 PF16186.5 Arm_3 Family 1 39 53 46.7 1.6e-12 1 CL0020
Cotton_A_39749_CDS 100 419 100 420 PF10250.9 O-FucT Family 1 335 336 250.6 3.3e-74 1 CL0113
Cotton_A_38006_CDS 14 108 8 110 PF00085.20 Thioredoxin Domain 8 101 103 87.2 6.2e-25 1 CL0172
Cotton_A_18758_CDS 41 79 33 81 PF00537.18 Toxin_3 Domain 10 49 55 24.4 2.4e-05 1 CL0054
Cotton_A_02611_CDS 338 392 338 393 PF02891.20 zf-MIZ Domain 1 49 50 61.2 5.9e-17 1 CL0229
Cotton_A_13296_CDS 21 53 21 54 PF12854.7 PPR_1 Repeat 1 33 34 36.4 3.1e-09 1 CL0020
Cotton_A_13296_CDS 60 109 60 109 PF13041.6 PPR_2 Repeat 1 50 50 67.0 1.2e-18 1 CL0020
Cotton_A_13296_CDS 127 159 126 159 PF12854.7 PPR_1 Repeat 2 34 34 40.0 2.3e-10 1 CL0020
Cotton_A_13296_CDS 165 214 165 214 PF13041.6 PPR_2 Repeat 1 50 50 60.9 9.7e-17 1 CL0020
Cotton_A_13296_CDS 235 284 235 284 PF13041.6 PPR_2 Repeat 1 50 50 56.0 3.3e-15 1 CL0020
Cotton_A_13296_CDS 303 332 301 334 PF12854.7 PPR_1 Repeat 3 32 34 33.1 3.3e-08 1 CL0020
Cotton_A_13296_CDS 340 388 340 389 PF13041.6 PPR_2 Repeat 1 49 50 56.2 2.9e-15 1 CL0020
Cotton_A_03804_CDS 333 395 330 395 PF16135.5 Jas Family 7 76 76 46.6 2.9e-12 1 No_clan
Cotton_A_39936_CDS 10 57 10 57 PF00319.18 SRF-TF Domain 1 48 48 89.7 5.7e-26 1 No_clan
Cotton_A_39936_CDS 84 170 80 171 PF01486.17 K-box Family 6 92 93 86.9 7.8e-25 1 No_clan
Cotton_A_12111_CDS 180 266 179 267 PF13813.6 MBOAT_2 Family 2 82 83 66.6 1.7e-18 1 CL0517
Cotton_A_08384_CDS 33 73 32 74 PF03790.13 KNOX1 Family 2 42 43 60.0 1.3e-16 1 No_clan
Cotton_A_08384_CDS 89 137 87 137 PF03791.13 KNOX2 Family 4 48 48 55.2 3.5e-15 1 No_clan
Cotton_A_08384_CDS 195 216 195 216 PF03789.13 ELK Domain 1 22 22 29.2 6.8e-07 1 No_clan
Cotton_A_08384_CDS 235 282 235 282 PF05920.11 Homeobox_KN Family 1 40 40 45.9 3.7e-12 1 CL0123
Cotton_A_37344_CDS 109 129 107 130 PF13516.6 LRR_6 Repeat 3 22 24 15.6 0.012 1 CL0022
Cotton_A_37344_CDS 238 260 236 260 PF13516.6 LRR_6 Repeat 3 24 24 10.0 0.73 1 CL0022
Cotton_A_37344_CDS 262 285 261 285 PF13516.6 LRR_6 Repeat 2 24 24 18.3 0.0016 1 CL0022
Cotton_A_17002_CDS 27 83 26 84 PF02701.15 zf-Dof Family 2 58 59 113.5 3.7e-33 1 No_clan
Cotton_A_19926_CDS 147 216 146 216 PF00498.26 FHA Family 2 69 69 33.4 4.1e-08 1 CL0357
Cotton_A_19926_CDS 932 1061 932 1063 PF00004.29 AAA Domain 1 130 132 125.4 2e-36 1 CL0023
Cotton_A_03662_CDS 81 443 74 470 PF00202.21 Aminotran_3 Domain 10 377 406 233.8 2.7e-69 1 CL0061
Cotton_A_01102_CDS 46 117 41 130 PF04493.14 Endonuclease_5 Family 6 77 197 64.6 9.4e-18 1 CL0189
Cotton_A_10756_CDS 32 186 31 188 PF04199.13 Cyclase Family 2 134 136 74.8 7.3e-21 1 CL0364
Cotton_A_03635_CDS 64 132 63 135 PF03937.16 Sdh5 Domain 2 70 73 79.2 1.6e-22 1 No_clan
Cotton_A_02952_CDS 10 36 10 36 PF08513.11 LisH Domain 1 27 27 25.4 9.6e-06 1 CL0561
Cotton_A_02952_CDS 469 496 459 496 PF00400.32 WD40 Repeat 12 38 38 25.2 2.1e-05 1 CL0186
Cotton_A_02952_CDS 502 538 500 538 PF00400.32 WD40 Repeat 3 38 38 25.1 2.1e-05 1 CL0186
Cotton_A_02952_CDS 545 582 543 582 PF00400.32 WD40 Repeat 3 38 38 14.1 0.068 1 CL0186
Cotton_A_02952_CDS 628 661 625 662 PF00400.32 WD40 Repeat 4 37 38 15.6 0.022 1 CL0186
Cotton_A_02952_CDS 710 745 707 745 PF00400.32 WD40 Repeat 4 38 38 20.0 0.0009 1 CL0186
Cotton_A_39589_CDS 4 102 3 104 PF12998.7 ING Domain 2 99 101 67.0 1.8e-18 1 No_clan
Cotton_A_18171_CDS 27 274 24 275 PF00139.19 Lectin_legB Domain 4 248 249 262.1 5.1e-78 1 CL0004
Cotton_A_18171_CDS 345 612 345 614 PF00069.25 Pkinase Domain 1 260 264 156.6 7.8e-46 1 CL0016
Cotton_A_21693_CDS 37 87 25 90 PF02823.16 ATP-synt_DE_N Domain 14 65 80 52.6 3.1e-14 1 No_clan
Cotton_A_17212_CDS 107 141 107 141 PF06747.13 CHCH Domain 1 35 35 34.2 1.9e-08 1 CL0351
Cotton_A_20049_CDS 40 145 40 145 PF00168.30 C2 Domain 1 103 103 46.4 3.7e-12 1 CL0154
Cotton_A_20049_CDS 194 303 193 305 PF00168.30 C2 Domain 2 101 103 77.3 9.3e-22 1 CL0154
Cotton_A_20049_CDS 450 605 450 605 PF08372.10 PRT_C Family 1 156 156 229.0 2.1e-68 1 CL0484
Cotton_A_21747_CDS 139 446 139 446 PF04765.13 DUF616 Family 1 314 314 431.4 1.9e-129 1 No_clan
Cotton_A_10962_CDS 13 56 13 57 PF16891.5 STPPase_N Family 1 47 48 61.8 6.2e-17 1 No_clan
Cotton_A_10962_CDS 60 250 58 253 PF00149.28 Metallophos Domain 3 201 204 140.6 9.3e-41 1 CL0163
Cotton_A_13203_CDS 126 410 122 410 PF06814.13 Lung_7-TM_R Family 6 295 295 172.1 1.5e-50 1 CL0192
Cotton_A_36874_CDS 6 148 6 148 PF01125.17 G10 Domain 1 146 146 212.4 2.2e-63 1 No_clan
Cotton_A_31041_CDS 184 300 184 301 PF03033.20 Glyco_transf_28 Family 1 111 139 91.2 5.7e-26 1 CL0113
Cotton_A_16325_CDS 3 176 3 179 PF04752.12 ChaC Family 1 175 179 179.9 4.5e-53 1 CL0278
Cotton_A_15320_CDS 79 135 79 136 PF03745.14 DUF309 Family 1 57 59 77.3 5.1e-22 1 No_clan
Cotton_A_11464_CDS 44 121 36 121 PF02298.17 Cu_bind_like Domain 7 84 84 77.5 5.9e-22 1 CL0026
Cotton_A_22190_CDS 13 83 13 85 PF08079.12 Ribosomal_L30_N Domain 1 67 72 33.9 2.7e-08 1 No_clan
Cotton_A_22190_CDS 93 143 93 143 PF00327.20 Ribosomal_L30 Domain 1 51 51 52.9 2.4e-14 1 No_clan
Cotton_A_28464_CDS 32 188 32 188 PF04043.15 PMEI Domain 1 154 154 136.4 9.9e-40 1 No_clan
Cotton_A_04465_CDS 26 250 25 250 PF04720.12 PDDEXK_6 Family 2 221 221 234.8 1e-69 1 No_clan
Cotton_A_02571_CDS 148 325 148 325 PF11891.8 RETICULATA-like Family 1 177 177 218.6 5.2e-65 1 No_clan
Cotton_A_30590_CDS 522 644 522 644 PF12932.7 Sec16 Domain 1 118 118 76.9 1.8e-21 1 No_clan
Cotton_A_30590_CDS 703 956 703 986 PF12931.7 Sec16_C Domain 1 269 302 178.8 1.9e-52 1 No_clan
Cotton_A_34574_CDS 128 424 127 426 PF16363.5 GDP_Man_Dehyd Domain 2 330 332 193.4 6.6e-57 1 CL0063
Cotton_A_01268_CDS 22 84 20 85 PF00690.26 Cation_ATPase_N Domain 4 68 69 52.5 2.9e-14 1 No_clan
Cotton_A_01268_CDS 134 311 132 312 PF00122.20 E1-E2_ATPase Family 4 180 181 155.9 7.5e-46 1 No_clan
Cotton_A_01268_CDS 328 605 328 605 PF00702.26 Hydrolase Domain 1 210 210 53.5 3.7e-14 1 CL0137
Cotton_A_31959_CDS 33 458 31 459 PF04597.14 Ribophorin_I Family 3 440 441 487.7 3.9e-146 1 No_clan
Cotton_A_23122_CDS 1 135 1 136 PF00223.19 PsaA_PsaB Family 57 193 718 207.5 3.2e-61 1 No_clan
Cotton_A_36288_CDS 24 333 24 335 PF00657.22 Lipase_GDSL Family 1 198 200 47.6 1.9e-12 1 CL0264
Cotton_A_29349_CDS 20 66 20 66 PF00319.18 SRF-TF Domain 1 47 48 45.4 4e-12 1 No_clan
Cotton_A_19818_CDS 140 168 140 170 PF01535.20 PPR Family 1 29 31 25.8 7.9e-06 1 CL0020
Cotton_A_19818_CDS 177 205 176 205 PF01535.20 PPR Family 3 31 31 16.8 0.0058 1 CL0020
Cotton_A_19818_CDS 247 275 246 276 PF01535.20 PPR Family 2 30 31 17.4 0.0038 1 CL0020
Cotton_A_35889_CDS 7 251 4 251 PF00335.20 Tetraspanin Family 4 229 229 90.2 1.6e-25 1 CL0347
Cotton_A_14516_CDS 186 430 186 430 PF07250.11 Glyoxal_oxid_N Family 1 240 240 300.3 7.8e-90 1 No_clan
Cotton_A_14516_CDS 596 695 590 695 PF09118.11 DUF1929 Domain 7 96 96 77.2 9e-22 1 CL0159
Cotton_A_29729_CDS 17 178 17 179 PF00071.22 Ras Domain 1 161 162 182.7 3.6e-54 1 CL0023
Cotton_A_14830_CDS 92 380 91 380 PF03151.16 TPT Family 2 290 290 387.2 4.8e-116 1 CL0184
Cotton_A_24142_CDS 8 61 8 63 PF08991.10 MTCP1 Domain 1 60 62 57.0 1.7e-15 1 CL0351
Cotton_A_11156_CDS 12 101 12 101 PF00447.17 HSF_DNA-bind Domain 1 96 96 93.7 7.9e-27 1 CL0123
Cotton_A_35717_CDS 30 184 29 186 PF00160.21 Pro_isomerase Domain 2 155 158 119.4 1.7e-34 1 CL0475
Cotton_A_09296_CDS 141 164 141 167 PF01535.20 PPR Family 4 27 31 11.3 0.33 1 CL0020
Cotton_A_09296_CDS 177 202 174 203 PF01535.20 PPR Family 5 30 31 10.6 0.53 1 CL0020
Cotton_A_09296_CDS 205 251 205 252 PF13041.6 PPR_2 Repeat 1 47 50 43.9 2e-11 1 CL0020
Cotton_A_09296_CDS 307 331 306 335 PF12854.7 PPR_1 Repeat 2 26 34 25.8 6.2e-06 1 CL0020
Cotton_A_09296_CDS 345 394 345 394 PF13041.6 PPR_2 Repeat 1 50 50 59.6 2.5e-16 1 CL0020
Cotton_A_09296_CDS 412 440 411 442 PF12854.7 PPR_1 Repeat 2 30 34 29.5 4.3e-07 1 CL0020
Cotton_A_09296_CDS 450 499 450 499 PF13041.6 PPR_2 Repeat 1 50 50 55.6 4.5e-15 1 CL0020
Cotton_A_09296_CDS 525 549 524 552 PF01535.20 PPR Family 3 27 31 11.8 0.22 1 CL0020
Cotton_A_08750_CDS 4 179 1 194 PF00955.21 HCO3_cotransp Family 4 173 508 126.7 1.1e-36 1 CL0062
Cotton_A_08750_CDS 202 372 183 377 PF00955.21 HCO3_cotransp Family 246 411 508 93.8 1.1e-26 1 CL0062
Cotton_A_08750_CDS 460 550 456 551 PF00955.21 HCO3_cotransp Family 423 507 508 63.5 1.7e-17 1 CL0062
Cotton_A_34781_CDS 126 297 126 298 PF04144.13 SCAMP Family 1 173 174 171.5 2e-50 1 No_clan
Cotton_A_03539_CDS 82 147 81 148 PF05198.16 IF3_N Domain 4 69 70 94.4 3.7e-27 1 No_clan
Cotton_A_03539_CDS 156 239 155 239 PF00707.22 IF3_C Domain 2 86 86 83.0 1.1e-23 1 No_clan
Cotton_A_07613_CDS 153 236 134 237 PF00085.20 Thioredoxin Domain 17 102 103 86.3 1.2e-24 1 CL0172
Cotton_A_13895_CDS 130 432 129 434 PF00248.21 Aldo_ket_red Domain 2 292 294 209.3 6.8e-62 1 No_clan
Cotton_A_10883_CDS 1 84 1 85 PF01248.26 Ribosomal_L7Ae Domain 11 94 95 80.5 5.4e-23 1 CL0101
Cotton_A_31543_CDS 1 113 1 113 PF05773.22 RWD Domain 5 116 116 76.4 2.1e-21 1 CL0208
Cotton_A_36895_CDS 113 207 113 207 PF03647.13 Tmemb_14 Family 1 92 92 55.1 9.8e-15 1 No_clan
Cotton_A_24177_CDS 84 358 84 358 PF00069.25 Pkinase Domain 1 264 264 227.2 2.3e-67 1 CL0016
Cotton_A_24177_CDS 405 466 403 468 PF13499.6 EF-hand_7 Domain 3 69 71 33.3 5.1e-08 1 CL0220
Cotton_A_24177_CDS 487 539 483 540 PF13499.6 EF-hand_7 Domain 6 70 71 42.0 9.6e-11 1 CL0220
Cotton_A_01614_CDS 25 70 25 83 PF13450.6 NAD_binding_8 Domain 1 45 68 37.7 1.7e-09 1 CL0063
Cotton_A_30348_CDS 22 207 22 207 PF01105.24 EMP24_GP25L Domain 1 182 182 177.0 3.4e-52 1 CL0521
Cotton_A_21195_CDS 1 82 1 84 PF09598.10 Stm1_N Family 1 64 65 54.2 2e-14 1 No_clan
Cotton_A_21195_CDS 153 260 153 260 PF04774.15 HABP4_PAI-RBP1 Family 1 116 116 98.4 4.7e-28 1 No_clan
Cotton_A_34986_CDS 88 340 88 341 PF08423.11 Rad51 Domain 1 254 255 416.2 4.1e-125 1 CL0023
Cotton_A_25581_CDS 43 75 43 75 PF14364.6 DUF4408 Family 1 33 33 55.8 2.7e-15 1 No_clan
Cotton_A_25581_CDS 297 332 297 332 PF05553.11 DUF761 Family 1 36 36 57.2 8.4e-16 1 No_clan
Cotton_A_30952_CDS 125 145 121 146 PF00642.24 zf-CCCH Family 5 26 27 27.9 1.6e-06 1 CL0537
Cotton_A_04007_CDS 75 142 25 142 PF02225.22 PA Family 21 89 89 32.5 6.7e-08 1 CL0364
Cotton_A_04007_CDS 233 276 232 276 PF13639.6 zf-RING_2 Domain 2 44 44 41.7 1.1e-10 1 CL0229
Cotton_A_18453_CDS 57 115 57 115 PF11717.8 Tudor-knot Family 1 55 55 69.9 1.2e-19 1 CL0049
Cotton_A_18453_CDS 169 223 169 223 PF17772.1 zf-MYST Domain 1 55 55 86.0 9.5e-25 1 CL0361
Cotton_A_18453_CDS 228 405 228 405 PF01853.18 MOZ_SAS Family 1 179 179 282.5 1.2e-84 1 CL0257
Cotton_A_13140_CDS 111 589 110 589 PF03372.23 Exo_endo_phos Domain 2 233 233 42.0 7.7e-11 1 CL0530
Cotton_A_20729_CDS 85 248 85 249 PF14543.6 TAXi_N Domain 1 177 178 135.0 3.2e-39 1 CL0129
Cotton_A_20729_CDS 269 421 268 423 PF14541.6 TAXi_C Domain 2 159 161 100.0 1.2e-28 1 CL0129
Cotton_A_16343_CDS 53 201 42 201 PF00753.27 Lactamase_B Domain 14 197 197 61.8 8.4e-17 1 CL0381
Cotton_A_16343_CDS 202 286 202 286 PF16123.5 HAGH_C Family 1 80 80 92.4 1.8e-26 1 CL0381
Cotton_A_21008_CDS 417 671 415 676 PF00069.25 Pkinase Domain 3 256 264 142.0 2.1e-41 1 CL0016
Cotton_A_26994_CDS 101 151 100 152 PF00847.20 AP2 Domain 2 53 54 47.9 1.1e-12 1 CL0081
Cotton_A_20955_CDS 10 78 9 80 PF00173.28 Cyt-b5 Domain 2 72 74 78.3 3.6e-22 1 No_clan
Cotton_A_20955_CDS 136 406 135 408 PF00487.24 FA_desaturase Domain 2 252 254 111.0 8.4e-32 1 No_clan
Cotton_A_19227_CDS 56 270 56 270 PF07059.12 DUF1336 Family 1 229 229 225.0 1.3e-66 1 No_clan
Cotton_A_13598_CDS 113 207 113 208 PF00011.21 HSP20 Family 1 101 102 69.6 2e-19 1 CL0190
Cotton_A_27127_CDS 26 286 4 299 PF05004.13 IFRD Family 29 291 306 146.8 7.5e-43 1 CL0020
Cotton_A_30151_CDS 162 455 160 456 PF07899.11 Frigida Family 3 287 289 352.3 1.9e-105 1 No_clan
Cotton_A_33892_CDS 81 104 79 105 PF13912.6 zf-C2H2_6 Domain 3 26 27 29.5 5.2e-07 1 CL0361
Cotton_A_33892_CDS 178 196 178 202 PF13912.6 zf-C2H2_6 Domain 1 19 27 17.2 0.0039 1 CL0361
Cotton_A_33892_CDS 234 254 234 259 PF13912.6 zf-C2H2_6 Domain 2 22 27 29.1 6.8e-07 1 CL0361
Cotton_A_02428_CDS 32 184 15 349 PF03600.16 CitMHS Family 8 161 300 109.8 1.5e-31 1 CL0182
Cotton_A_21128_CDS 73 212 73 213 PF10262.9 Rdx Family 1 73 74 63.5 1.5e-17 1 CL0172
Cotton_A_35998_CDS 5 299 1 300 PF00332.18 Glyco_hydro_17 Domain 25 312 313 217.4 3.5e-64 1 CL0058
Cotton_A_35998_CDS 320 388 320 391 PF07983.13 X8 Domain 1 73 76 58.3 8.9e-16 1 No_clan
Cotton_A_04894_CDS 10 124 8 126 PF01412.18 ArfGap Domain 3 115 117 129.9 4.4e-38 1 No_clan
Cotton_A_04894_CDS 166 257 166 276 PF00168.30 C2 Domain 1 95 103 79.4 2e-22 1 CL0154
Cotton_A_35850_CDS 86 411 86 419 PF00295.17 Glyco_hydro_28 Domain 1 317 325 313.6 1.4e-93 1 CL0268
Cotton_A_04899_CDS 5 266 4 271 PF14938.6 SNAP Domain 2 273 282 92.1 4e-26 1 CL0020
Cotton_A_04232_CDS 35 447 33 448 PF00501.28 AMP-binding Family 3 422 423 349.5 2e-104 1 CL0378
Cotton_A_04232_CDS 476 531 473 531 PF13193.6 AMP-binding_C Domain 21 76 76 36.1 9.5e-09 1 CL0531
Cotton_A_09246_CDS 21 70 21 84 PF05758.12 Ycf1 Family 1 50 945 71.5 3.7e-20 1 No_clan
Cotton_A_01639_CDS 41 304 31 311 PF05055.12 DUF677 Family 58 329 336 181.8 1.5e-53 1 CL0133
Cotton_A_23519_CDS 61 88 51 88 PF00400.32 WD40 Repeat 11 38 38 16.7 0.0099 1 CL0186
Cotton_A_23519_CDS 93 130 92 130 PF00400.32 WD40 Repeat 2 38 38 25.6 1.6e-05 1 CL0186
Cotton_A_23519_CDS 136 174 134 174 PF00400.32 WD40 Repeat 3 38 38 28.7 1.6e-06 1 CL0186
Cotton_A_23519_CDS 179 216 178 216 PF00400.32 WD40 Repeat 2 38 38 13.5 0.1 1 CL0186
Cotton_A_23519_CDS 389 428 388 429 PF00400.32 WD40 Repeat 2 37 38 24.0 4.8e-05 1 CL0186
Cotton_A_23519_CDS 435 472 433 472 PF00400.32 WD40 Repeat 3 38 38 17.3 0.0067 1 CL0186
Cotton_A_23519_CDS 493 523 487 524 PF00400.32 WD40 Repeat 8 37 38 21.1 0.0004 1 CL0186
Cotton_A_23519_CDS 532 565 528 565 PF00400.32 WD40 Repeat 5 37 38 26.4 8.4e-06 1 CL0186
Cotton_A_23519_CDS 570 607 570 608 PF00400.32 WD40 Repeat 1 37 38 22.5 0.00015 1 CL0186
Cotton_A_23519_CDS 613 649 612 650 PF00400.32 WD40 Repeat 2 37 38 13.6 0.093 1 CL0186
Cotton_A_23519_CDS 672 805 671 805 PF08625.11 Utp13 Domain 2 142 142 136.9 4.3e-40 1 No_clan
Cotton_A_18415_CDS 49 132 49 132 PF14547.6 Hydrophob_seed Domain 1 85 85 98.7 1.6e-28 1 CL0482
Cotton_A_15186_CDS 12 36 11 51 PF07897.11 EAR Family 3 27 36 33.0 3.4e-08 1 No_clan
Cotton_A_15186_CDS 363 425 359 425 PF16135.5 Jas Family 7 76 76 49.9 2.6e-13 1 No_clan
Cotton_A_13184_CDS 35 54 34 64 PF00023.30 Ank Repeat 2 21 32 16.4 0.0089 1 CL0465
Cotton_A_13184_CDS 68 128 59 133 PF12796.7 Ank_2 Repeat 25 75 83 33.0 6.9e-08 1 CL0465
Cotton_A_13184_CDS 170 231 150 237 PF12796.7 Ank_2 Repeat 24 76 83 39.1 8.3e-10 1 CL0465
Cotton_A_13184_CDS 246 339 246 343 PF12796.7 Ank_2 Repeat 1 79 83 51.3 1.3e-13 1 CL0465
Cotton_A_13184_CDS 407 517 405 517 PF13962.6 PGG Domain 3 116 116 96.6 8.1e-28 1 No_clan
Cotton_A_23480_CDS 56 150 56 152 PF04800.12 ETC_C1_NDUFA4 Family 1 93 96 110.9 2.6e-32 1 No_clan
Cotton_A_22385_CDS 1 76 1 78 PF01249.18 Ribosomal_S21e Family 1 76 79 130.3 2.1e-38 1 No_clan
Cotton_A_17821_CDS 22 174 21 185 PF02536.14 mTERF Family 2 160 314 86.6 1.4e-24 1 No_clan
Cotton_A_17821_CDS 188 294 177 295 PF02536.14 mTERF Family 210 313 314 61.5 6.1e-17 1 No_clan
Cotton_A_17821_CDS 318 455 309 465 PF02536.14 mTERF Family 13 159 314 49.3 3.1e-13 1 No_clan
Cotton_A_17821_CDS 470 554 456 570 PF02536.14 mTERF Family 210 291 314 41.2 9.4e-11 1 No_clan
Cotton_A_17821_CDS 586 772 586 774 PF02536.14 mTERF Family 1 159 314 87.5 7.5e-25 1 No_clan
Cotton_A_04530_CDS 15 178 15 179 PF03398.14 Ist1 Family 1 163 164 199.8 2.6e-59 1 No_clan
Cotton_A_15016_CDS 2 65 2 66 PF08156.13 NOP5NT Domain 1 64 65 65.9 3.1e-18 1 No_clan
Cotton_A_15016_CDS 166 394 166 395 PF01798.18 Nop Family 1 229 230 286.6 1.3e-85 1 No_clan
Cotton_A_11887_CDS 95 172 94 175 PF00762.19 Ferrochelatase Domain 2 76 317 79.3 2.6e-22 1 CL0043
Cotton_A_11887_CDS 213 462 209 463 PF00762.19 Ferrochelatase Domain 72 316 317 259.5 3.6e-77 1 CL0043
Cotton_A_31106_CDS 38 117 38 124 PF03492.15 Methyltransf_7 Family 1 81 334 92.4 3.1e-26 1 CL0063
Cotton_A_34659_CDS 13 51 1 55 PF00310.21 GATase_2 Domain 163 200 420 42.6 3.2e-11 1 CL0052
Cotton_A_28547_CDS 52 75 50 75 PF00642.24 zf-CCCH Family 4 27 27 31.4 1.3e-07 1 CL0537
Cotton_A_28547_CDS 95 120 94 120 PF00642.24 zf-CCCH Family 2 27 27 41.6 7.7e-11 1 CL0537
Cotton_A_28547_CDS 141 166 140 166 PF00642.24 zf-CCCH Family 2 27 27 36.8 2.4e-09 1 CL0537
Cotton_A_28547_CDS 290 315 289 315 PF00642.24 zf-CCCH Family 2 27 27 36.7 2.7e-09 1 CL0537
Cotton_A_04869_CDS 31 214 11 221 PF00888.22 Cullin Family 64 249 618 112.8 1.7e-32 1 No_clan
Cotton_A_09124_CDS 51 132 50 132 PF14547.6 Hydrophob_seed Domain 2 84 85 95.6 1.5e-27 1 CL0482
Cotton_A_27253_CDS 62 514 62 515 PF01425.21 Amidase Family 1 450 451 496.6 7.1e-149 1 No_clan
Cotton_A_14727_CDS 32 103 30 105 PF07524.13 Bromo_TP Domain 3 74 77 63.0 1.9e-17 1 CL0012
Cotton_A_14727_CDS 167 182 167 218 PF10406.9 TAF8_C Domain 1 16 49 20.2 0.00066 1 No_clan
Cotton_A_22100_CDS 56 98 55 98 PF13639.6 zf-RING_2 Domain 2 44 44 52.2 5.5e-14 1 CL0229
Cotton_A_04367_CDS 121 168 121 169 PF13041.6 PPR_2 Repeat 1 48 50 33.0 5.2e-08 1 CL0020
Cotton_A_04367_CDS 223 269 222 270 PF13041.6 PPR_2 Repeat 2 48 50 43.9 2e-11 1 CL0020
Cotton_A_04367_CDS 298 321 295 324 PF01535.20 PPR Family 4 27 31 19.5 0.00082 1 CL0020
Cotton_A_04367_CDS 323 371 323 372 PF13041.6 PPR_2 Repeat 1 49 50 32.7 6.3e-08 1 CL0020
Cotton_A_04367_CDS 401 425 398 426 PF01535.20 PPR Family 6 30 31 14.2 0.038 1 CL0020
Cotton_A_04367_CDS 428 457 427 457 PF01535.20 PPR Family 2 31 31 19.0 0.0012 1 CL0020
Cotton_A_04367_CDS 499 521 497 523 PF01535.20 PPR Family 3 25 31 9.6 1.2 1 CL0020
Cotton_A_04367_CDS 526 572 525 574 PF13041.6 PPR_2 Repeat 2 48 50 43.0 3.7e-11 1 CL0020
Cotton_A_04367_CDS 627 673 626 675 PF13041.6 PPR_2 Repeat 2 48 50 41.3 1.3e-10 1 CL0020
Cotton_A_04367_CDS 702 725 700 726 PF01535.20 PPR Family 3 26 31 17.3 0.0039 1 CL0020
Cotton_A_04367_CDS 800 924 800 924 PF14432.6 DYW_deaminase Family 1 127 127 145.5 7.2e-43 1 CL0109
Cotton_A_12306_CDS 55 315 50 316 PF07714.17 Pkinase_Tyr Domain 7 258 259 113.8 7.8e-33 1 CL0016
Cotton_A_22117_CDS 11 139 8 139 PF04535.12 DUF588 Domain 4 150 150 78.8 3.4e-22 1 CL0396
Cotton_A_19673_CDS 93 397 92 404 PF03016.15 Exostosin Family 3 296 300 244.4 1.4e-72 1 No_clan
Cotton_A_13192_CDS 14 101 14 102 PF13334.6 DUF4094 Family 1 87 88 79.0 2.7e-22 1 No_clan
Cotton_A_13192_CDS 141 337 141 339 PF01762.21 Galactosyl_T Family 1 193 195 163.8 4.2e-48 1 CL0110
Cotton_A_11732_CDS 128 286 108 294 PF09991.9 DUF2232 Family 22 192 290 33.0 3.6e-08 1 No_clan
Cotton_A_09602_CDS 242 350 241 351 PF02338.19 OTU Family 3 127 127 49.8 4.6e-13 1 CL0125
Cotton_A_13089_CDS 24 162 23 163 PF01467.26 CTP_transf_like Domain 2 142 143 33.1 5.4e-08 1 CL0039
Cotton_A_28554_CDS 17 432 17 440 PF02897.15 Peptidase_S9_N Domain 1 406 414 435.8 1.5e-130 1 CL0186
Cotton_A_28554_CDS 499 730 499 731 PF00326.21 Peptidase_S9 Domain 1 211 212 217.3 1.6e-64 1 CL0028
Cotton_A_27220_CDS 129 215 129 215 PF01985.21 CRS1_YhbY Domain 1 84 84 56.3 2.7e-15 1 No_clan
Cotton_A_12827_CDS 61 105 61 105 PF03107.16 C1_2 Domain 1 47 47 26.5 5.9e-06 1 CL0006
Cotton_A_12827_CDS 299 348 298 348 PF03107.16 C1_2 Domain 2 47 47 30.1 4.3e-07 1 CL0006
Cotton_A_33884_CDS 299 400 298 401 PF13499.6 EF-hand_7 Domain 2 70 71 32.0 1.3e-07 1 CL0220
Cotton_A_08199_CDS 48 325 47 325 PF07714.17 Pkinase_Tyr Domain 2 259 259 197.6 2.1e-58 1 CL0016
Cotton_A_26007_CDS 98 253 97 254 PF02518.26 HATPase_c Domain 2 111 112 47.7 1.9e-12 1 CL0025
Cotton_A_26007_CDS 256 795 256 799 PF00183.18 HSP90 Family 1 513 517 709.7 2.5e-213 1 No_clan
Cotton_A_24419_CDS 89 268 84 269 PF10294.9 Methyltransf_16 Family 18 173 174 33.7 2.7e-08 1 CL0063
Cotton_A_16371_CDS 1 21 1 27 PF00182.19 Glyco_hydro_19 Domain 138 158 232 21.2 0.00022 1 CL0037
Cotton_A_16371_CDS 28 75 23 75 PF00182.19 Glyco_hydro_19 Domain 186 232 232 34.7 1.6e-08 1 CL0037
Cotton_A_16113_CDS 108 486 108 486 PF03514.14 GRAS Family 1 374 374 369.2 2.1e-110 1 CL0063
Cotton_A_37516_CDS 9 323 9 323 PF00225.23 Kinesin Domain 1 333 333 314.3 7.7e-94 1 CL0023
Cotton_A_02133_CDS 21 56 20 56 PF05627.11 AvrRpt-cleavage Domain 2 37 37 80.9 2.9e-23 1 No_clan
Cotton_A_30219_CDS 15 196 12 197 PF10294.9 Methyltransf_16 Family 4 173 174 99.9 1.3e-28 1 CL0063
Cotton_A_30404_CDS 12 135 12 135 PF02365.15 NAM Family 1 126 126 126.2 1.4e-36 1 No_clan
Cotton_A_16833_CDS 130 416 130 416 PF00069.25 Pkinase Domain 1 264 264 215.2 1e-63 1 CL0016
Cotton_A_28178_CDS 496 538 495 538 PF13639.6 zf-RING_2 Domain 2 44 44 41.3 1.4e-10 1 CL0229
Cotton_A_02941_CDS 96 265 58 296 PF02450.15 LCAT Family 48 213 392 75.1 5.6e-21 1 CL0028
Cotton_A_20996_CDS 10 100 9 110 PF00168.30 C2 Domain 2 93 103 54.7 9.6e-15 1 CL0154
Cotton_A_18308_CDS 103 129 102 130 PF01535.20 PPR Family 4 30 31 10.7 0.52 1 CL0020
Cotton_A_18308_CDS 198 246 196 249 PF13812.6 PPR_3 Repeat 13 59 63 18.8 0.0012 1 CL0020
Cotton_A_18308_CDS 305 334 305 335 PF01535.20 PPR Family 1 30 31 25.4 1.1e-05 1 CL0020
Cotton_A_18308_CDS 378 404 375 405 PF01535.20 PPR Family 4 30 31 10.3 0.71 1 CL0020
Cotton_A_18308_CDS 407 436 406 436 PF01535.20 PPR Family 2 31 31 22.1 0.00012 1 CL0020
Cotton_A_18308_CDS 507 536 507 537 PF01535.20 PPR Family 1 30 31 22.2 0.00011 1 CL0020
Cotton_A_18308_CDS 580 600 578 601 PF01535.20 PPR Family 4 24 31 10.9 0.44 1 CL0020
Cotton_A_18308_CDS 606 653 605 654 PF13041.6 PPR_2 Repeat 2 49 50 40.0 3.3e-10 1 CL0020
Cotton_A_18308_CDS 680 704 679 708 PF01535.20 PPR Family 2 26 31 16.0 0.01 1 CL0020
Cotton_A_23505_CDS 2 67 1 67 PF09588.10 YqaJ Domain 82 148 148 27.2 3.5e-06 1 CL0236
Cotton_A_01891_CDS 109 127 107 127 PF00612.27 IQ Motif 3 21 21 21.0 0.00018 1 CL0220
Cotton_A_01891_CDS 337 370 299 384 PF13178.6 DUF4005 Family 11 46 93 36.3 6.8e-09 1 No_clan
Cotton_A_24718_CDS 102 132 98 140 PF00782.20 DSPc Domain 86 116 133 26.0 6.4e-06 1 CL0031
Cotton_A_21669_CDS 28 578 27 581 PF03321.13 GH3 Family 2 524 527 685.7 4.8e-206 1 CL0378
Cotton_A_14751_CDS 6 36 2 38 PF04520.13 Senescence_reg Family 136 166 168 31.9 2.1e-07 1 No_clan
Cotton_A_19481_CDS 104 456 104 456 PF10250.9 O-FucT Family 1 336 336 211.7 2.2e-62 1 CL0113
Cotton_A_08526_CDS 141 284 132 286 PF12483.8 GIDE Family 16 156 158 121.5 2e-35 1 No_clan
Cotton_A_08526_CDS 332 379 330 380 PF13920.6 zf-C3HC4_3 Domain 3 49 50 46.7 2e-12 1 CL0229
Cotton_A_15765_CDS 56 315 56 321 PF00295.17 Glyco_hydro_28 Domain 1 258 325 236.7 3.3e-70 1 CL0268
Cotton_A_16514_CDS 2 271 1 272 PF00067.22 p450 Domain 86 366 463 155.4 2e-45 1 No_clan
Cotton_A_41232_CDS 147 198 147 199 PF00847.20 AP2 Domain 1 53 54 44.6 1.2e-11 1 CL0081
Cotton_A_22131_CDS 46 276 46 276 PF00230.20 MIP Family 1 227 227 276.3 2e-82 1 No_clan
Cotton_A_38535_CDS 95 187 94 194 PF03168.13 LEA_2 Domain 2 93 101 28.2 2e-06 1 CL0159
Cotton_A_08314_CDS 205 280 204 280 PF00498.26 FHA Family 2 69 69 57.7 1.1e-15 1 CL0357
Cotton_A_08314_CDS 312 565 305 565 PF00481.21 PP2C Family 8 258 258 146.5 1.1e-42 1 CL0238
Cotton_A_30865_CDS 47 187 46 188 PF03073.15 TspO_MBR Family 2 134 135 76.1 2.5e-21 1 No_clan
Cotton_A_04234_CDS 38 92 37 95 PF00403.26 HMA Domain 2 56 62 30.7 3.2e-07 1 No_clan
Cotton_A_04234_CDS 153 202 149 206 PF00403.26 HMA Domain 9 57 62 26.8 5.4e-06 1 No_clan
Cotton_A_23192_CDS 433 543 426 546 PF07714.17 Pkinase_Tyr Domain 143 255 259 25.3 8.1e-06 1 CL0016
Cotton_A_23192_CDS 824 862 823 862 PF00400.32 WD40 Repeat 2 38 38 17.9 0.0042 1 CL0186
Cotton_A_23192_CDS 914 946 911 946 PF00400.32 WD40 Repeat 6 38 38 15.4 0.027 1 CL0186
Cotton_A_19928_CDS 250 295 241 300 PF00571.28 CBS Domain 7 51 57 39.6 5.1e-10 1 No_clan
Cotton_A_19928_CDS 334 384 327 385 PF00571.28 CBS Domain 6 56 57 43.1 4.1e-11 1 No_clan
Cotton_A_06450_CDS 127 200 119 200 PF14159.6 CAAD Domain 12 85 85 88.1 2.5e-25 1 No_clan
Cotton_A_12924_CDS 13 176 13 176 PF02099.17 Josephin Family 1 163 163 122.4 1.9e-35 1 CL0125
Cotton_A_02234_CDS 113 306 112 306 PF00926.19 DHBP_synthase Family 2 192 192 228.5 4.7e-68 1 No_clan
Cotton_A_02234_CDS 319 482 315 482 PF00925.20 GTP_cyclohydro2 Family 5 163 163 241.6 2.8e-72 1 No_clan
Cotton_A_06296_CDS 166 239 159 257 PF01909.23 NTP_transf_2 Family 19 75 95 34.8 1.5e-08 1 CL0260
Cotton_A_06296_CDS 311 369 311 369 PF03828.19 PAP_assoc Family 1 62 62 50.6 1.6e-13 1 No_clan
Cotton_A_20849_CDS 1478 1601 1454 1611 PF00613.20 PI3Ka Family 50 172 185 76.1 2.3e-21 1 CL0020
Cotton_A_20849_CDS 1754 1984 1752 1985 PF00454.27 PI3_PI4_kinase Family 3 249 250 84.1 1.3e-23 1 CL0016
Cotton_A_32896_CDS 1 154 1 154 PF00033.19 Cytochrome_B Domain 36 189 189 213.9 1.7e-63 1 CL0328
Cotton_A_38146_CDS 125 170 122 171 PF01805.20 Surp Family 4 51 53 42.3 5.5e-11 1 No_clan
Cotton_A_38146_CDS 317 385 317 385 PF04818.13 CTD_bind Family 1 63 63 46.9 3.6e-12 1 No_clan
Cotton_A_33724_CDS 33 146 32 148 PF07732.15 Cu-oxidase_3 Domain 2 117 119 125.7 8.9e-37 1 CL0026
Cotton_A_33724_CDS 159 293 158 294 PF00394.22 Cu-oxidase Domain 2 158 159 135.9 1.2e-39 1 CL0026
Cotton_A_33724_CDS 391 510 374 514 PF07731.14 Cu-oxidase_2 Domain 19 133 137 92.3 2.1e-26 1 CL0026
Cotton_A_01359_CDS 92 232 91 235 PF02878.16 PGM_PMM_I Domain 2 135 138 115.3 1.6e-33 1 No_clan
Cotton_A_01359_CDS 265 368 264 371 PF02879.16 PGM_PMM_II Domain 2 99 103 47.6 2e-12 1 No_clan
Cotton_A_01359_CDS 376 499 376 499 PF02880.16 PGM_PMM_III Domain 1 114 114 104.3 4e-30 1 No_clan
Cotton_A_01359_CDS 559 611 530 617 PF00408.20 PGM_PMM_IV Family 24 72 74 30.4 3.1e-07 1 No_clan
Cotton_A_40249_CDS 235 290 230 290 PF13855.6 LRR_8 Repeat 6 61 61 40.0 2.4e-10 1 CL0022
Cotton_A_22578_CDS 50 152 49 153 PF01521.20 Fe-S_biosyn Family 3 110 111 51.9 7.1e-14 1 No_clan
Cotton_A_06542_CDS 61 353 60 354 PF01095.19 Pectinesterase Family 2 297 298 228.1 9.6e-68 1 CL0268
Cotton_A_26532_CDS 30 69 29 69 PF08263.12 LRRNT_2 Family 2 41 41 30.4 3.4e-07 1 No_clan
Cotton_A_26532_CDS 195 255 195 255 PF13855.6 LRR_8 Repeat 1 61 61 29.3 5.3e-07 1 CL0022
Cotton_A_26532_CDS 268 327 267 327 PF13855.6 LRR_8 Repeat 2 61 61 32.6 4.9e-08 1 CL0022
Cotton_A_26532_CDS 474 533 473 533 PF13855.6 LRR_8 Repeat 2 61 61 38.8 5.9e-10 1 CL0022
Cotton_A_26532_CDS 593 857 592 859 PF00069.25 Pkinase Domain 10 260 264 145.5 1.8e-42 1 CL0016
Cotton_A_11145_CDS 69 464 69 464 PF00916.20 Sulfate_transp Family 1 380 380 408.5 2.2e-122 1 CL0062
Cotton_A_11145_CDS 521 632 509 632 PF01740.21 STAS Domain 7 117 117 85.1 2.5e-24 1 CL0502
Cotton_A_35216_CDS 40 123 37 130 PF01248.26 Ribosomal_L7Ae Domain 4 87 95 83.9 4.9e-24 1 CL0101
Cotton_A_35343_CDS 407 601 406 639 PF02902.19 Peptidase_C48 Domain 2 189 216 135.1 3e-39 1 CL0125
Cotton_A_04075_CDS 11 62 10 64 PF04588.13 HIG_1_N Family 2 50 52 31.8 1.2e-07 1 No_clan
Cotton_A_22520_CDS 4 100 1 101 PF12146.8 Hydrolase_4 Family 20 114 239 96.2 1.7e-27 1 CL0028
Cotton_A_11210_CDS 33 274 33 274 PF04873.13 EIN3 Family 1 252 252 391.4 1.5e-117 1 No_clan
Cotton_A_18083_CDS 66 307 65 313 PF05153.15 MIOX Family 2 241 249 395.3 1.1e-118 1 CL0237
Cotton_A_27029_CDS 49 73 48 74 PF00642.24 zf-CCCH Family 2 26 27 37.0 2.1e-09 1 CL0537
Cotton_A_27029_CDS 92 116 91 116 PF00642.24 zf-CCCH Family 3 27 27 37.3 1.8e-09 1 CL0537
Cotton_A_27029_CDS 137 161 135 161 PF00642.24 zf-CCCH Family 3 27 27 39.4 3.8e-10 1 CL0537
Cotton_A_27029_CDS 280 305 279 305 PF00642.24 zf-CCCH Family 2 27 27 39.2 4.3e-10 1 CL0537
Cotton_A_27029_CDS 326 350 325 351 PF00642.24 zf-CCCH Family 2 26 27 27.7 1.8e-06 1 CL0537
Cotton_A_19486_CDS 150 182 150 183 PF07719.17 TPR_2 Repeat 1 33 34 24.1 2.5e-05 1 CL0020
Cotton_A_22772_CDS 96 171 55 184 PF00931.22 NB-ARC Domain 103 179 252 57.1 1.5e-15 1 CL0023
Cotton_A_21476_CDS 10 65 10 66 PF00412.22 LIM Domain 1 57 58 44.2 1.7e-11 1 CL0167
Cotton_A_21476_CDS 105 160 105 161 PF00412.22 LIM Domain 1 57 58 40.9 1.8e-10 1 CL0167
Cotton_A_19678_CDS 53 128 51 129 PF01241.18 PSI_PSAK Family 3 69 70 63.7 1.2e-17 1 No_clan
Cotton_A_16205_CDS 15 130 12 158 PF10358.9 NT-C2 Family 6 111 146 30.5 2.5e-07 1 CL0154
Cotton_A_07144_CDS 17 205 17 206 PF00827.17 Ribosomal_L15e Family 1 190 191 314.4 2.4e-94 1 CL0652
Cotton_A_36251_CDS 45 105 15 123 PF00078.27 RVT_1 Family 120 185 222 46.4 3.3e-12 1 CL0027
Cotton_A_36251_CDS 103 162 98 173 PF17919.1 RT_RNaseH_2 Domain 6 70 100 51.7 6.8e-14 1 CL0219
Cotton_A_09215_CDS 20 61 19 61 PF00010.26 HLH Domain 14 53 53 29.6 5e-07 1 No_clan
Cotton_A_24048_CDS 98 168 98 168 PF00076.22 RRM_1 Domain 1 70 70 65.7 2.4e-18 1 CL0221
Cotton_A_24048_CDS 206 276 206 276 PF00076.22 RRM_1 Domain 1 70 70 71.1 5e-20 1 CL0221
Cotton_A_11463_CDS 22 81 14 87 PF01429.19 MBD Domain 9 71 77 37.1 1.9e-09 1 CL0081
Cotton_A_02531_CDS 201 628 194 629 PF00501.28 AMP-binding Family 10 422 423 136.2 1.1e-39 1 CL0378
Cotton_A_16012_CDS 35 208 20 276 PF14576.6 SEO_N Family 19 205 287 61.8 5.6e-17 1 No_clan
Cotton_A_16012_CDS 419 646 415 647 PF14577.6 SEO_C Family 5 231 232 135.2 2.3e-39 1 No_clan
Cotton_A_13671_CDS 41 138 39 164 PF01582.20 TIR Family 3 107 176 65.8 4.1e-18 1 CL0173
Cotton_A_12992_CDS 89 185 87 186 PF00153.27 Mito_carr Family 4 96 97 82.1 2e-23 1 No_clan
Cotton_A_12992_CDS 192 287 191 290 PF00153.27 Mito_carr Family 2 94 97 84.0 5.1e-24 1 No_clan
Cotton_A_12992_CDS 293 378 291 384 PF00153.27 Mito_carr Family 3 91 97 56.8 1.6e-15 1 No_clan
Cotton_A_04018_CDS 29 169 29 170 PF04043.15 PMEI Domain 1 153 154 69.0 5.7e-19 1 No_clan
Cotton_A_07582_CDS 61 313 56 318 PF00481.21 PP2C Family 6 254 258 179.7 8.1e-53 1 CL0238
Cotton_A_14609_CDS 40 165 38 169 PF04263.16 TPK_catalytic Domain 3 115 120 142.2 7.4e-42 1 No_clan
Cotton_A_14609_CDS 184 249 183 249 PF04265.14 TPK_B1_binding Domain 2 70 70 79.1 1.4e-22 1 No_clan
Cotton_A_27103_CDS 8 246 7 246 PF05875.12 Ceramidase Family 2 263 263 191.2 2.3e-56 1 CL0192
Cotton_A_15307_CDS 16 109 10 110 PF02519.14 Auxin_inducible Family 2 89 90 99.4 9.9e-29 1 No_clan
Cotton_A_24734_CDS 42 182 41 183 PF04043.15 PMEI Domain 3 153 154 44.3 2.3e-11 1 No_clan
Cotton_A_16913_CDS 26 118 26 119 PF14363.6 AAA_assoc Family 1 95 96 79.6 1.6e-22 1 No_clan
Cotton_A_16913_CDS 241 388 240 389 PF00004.29 AAA Domain 2 131 132 57.3 2.1e-15 1 CL0023
Cotton_A_21369_CDS 127 216 127 216 PF13966.6 zf-RVT Domain 1 85 85 60.2 2.3e-16 1 No_clan
Cotton_A_23799_CDS 75 114 74 115 PF03790.13 KNOX1 Family 2 41 43 78.9 1.7e-22 1 No_clan
Cotton_A_23799_CDS 127 173 126 173 PF03791.13 KNOX2 Family 2 48 48 88.4 1.5e-25 1 No_clan
Cotton_A_16418_CDS 16 91 16 95 PF12776.7 Myb_DNA-bind_3 Domain 1 77 96 51.7 1.3e-13 1 CL0123
Cotton_A_16984_CDS 4 257 4 258 PF00069.25 Pkinase Domain 1 263 264 213.7 2.9e-63 1 CL0016
Cotton_A_23037_CDS 133 341 133 341 PF00902.18 TatC Family 1 207 207 204.6 1.5e-60 1 No_clan
Cotton_A_17909_CDS 3 74 3 74 PF00240.23 ubiquitin Domain 1 72 72 114.1 1.8e-33 1 CL0072
Cotton_A_17909_CDS 79 150 79 150 PF00240.23 ubiquitin Domain 1 72 72 114.1 1.8e-33 1 CL0072
Cotton_A_17909_CDS 155 226 155 226 PF00240.23 ubiquitin Domain 1 72 72 112.6 5.2e-33 1 CL0072
Cotton_A_17909_CDS 231 302 231 302 PF00240.23 ubiquitin Domain 1 72 72 114.1 1.8e-33 1 CL0072
Cotton_A_17909_CDS 307 378 307 378 PF00240.23 ubiquitin Domain 1 72 72 114.1 1.8e-33 1 CL0072
Cotton_A_23339_CDS 36 96 18 99 PF15511.6 CENP-T_C Domain 19 79 108 34.4 1.8e-08 1 CL0012
Cotton_A_34381_CDS 405 779 405 780 PF03514.14 GRAS Family 1 373 374 376.6 1.2e-112 1 CL0063
Cotton_A_33217_CDS 9 78 9 80 PF00173.28 Cyt-b5 Domain 1 72 74 80.6 6.9e-23 1 No_clan
Cotton_A_33217_CDS 136 406 135 408 PF00487.24 FA_desaturase Domain 2 252 254 113.7 1.2e-32 1 No_clan
Cotton_A_25523_CDS 115 295 114 295 PF01507.19 PAPS_reduct Family 2 174 174 144.9 2.4e-42 1 CL0039
Cotton_A_25523_CDS 370 464 361 465 PF00085.20 Thioredoxin Domain 13 102 103 48.2 8.5e-13 1 CL0172
Cotton_A_33890_CDS 36 161 31 167 PF16414.5 NPC1_N Domain 112 240 244 97.4 9.7e-28 1 CL0644
Cotton_A_33890_CDS 440 785 302 792 PF02460.18 Patched Family 153 503 811 181.2 2.7e-53 1 CL0322
Cotton_A_33890_CDS 919 1124 873 1126 PF02460.18 Patched Family 597 809 811 91.1 5e-26 1 CL0322
Cotton_A_15738_CDS 116 233 116 233 PF01661.21 Macro Domain 1 118 118 134.7 1.5e-39 1 CL0223
Cotton_A_24590_CDS 180 421 179 421 PF04788.12 DUF620 Family 2 243 243 398.7 8.3e-120 1 No_clan
Cotton_A_32438_CDS 33 77 32 77 PF08100.11 Dimerisation Domain 2 51 51 49.2 3.8e-13 1 CL0123
Cotton_A_32438_CDS 127 299 127 302 PF00891.18 Methyltransf_2 Domain 1 178 210 166.3 5.4e-49 1 CL0063
Cotton_A_02864_CDS 56 161 49 183 PF00501.28 AMP-binding Family 9 116 423 70.9 7.3e-20 1 CL0378
Cotton_A_10378_CDS 170 221 169 222 PF07716.15 bZIP_2 Family 3 53 54 32.2 8.3e-08 1 CL0018
Cotton_A_29783_CDS 126 215 121 216 PF00254.28 FKBP_C Domain 7 93 94 69.1 3.1e-19 1 CL0487
Cotton_A_28965_CDS 23 71 21 96 PF17832.1 Pre-PUA Domain 4 53 87 49.1 7.1e-13 1 CL0668
Cotton_A_28965_CDS 107 184 106 184 PF01472.20 PUA Family 2 74 74 66.7 1.3e-18 1 CL0178
Cotton_A_28965_CDS 191 376 191 376 PF17135.4 Ribosomal_L18 Family 1 187 187 313.2 4.2e-94 1 CL0588
Cotton_A_21127_CDS 251 323 250 325 PF04564.15 U-box Domain 4 71 73 54.5 9.7e-15 1 CL0229
Cotton_A_09436_CDS 21 58 19 59 PF08263.12 LRRNT_2 Family 3 40 41 36.4 4.7e-09 1 No_clan
Cotton_A_09436_CDS 566 584 566 586 PF00560.33 LRR_1 Repeat 2 20 23 12.6 0.16 1 CL0022
Cotton_A_09436_CDS 738 937 736 1004 PF00069.25 Pkinase Domain 3 198 264 144.0 5.2e-42 1 CL0016
Cotton_A_19249_CDS 34 77 3 149 PF05097.12 DUF688 Family 52 93 446 23.1 3.6e-05 1 No_clan
Cotton_A_33667_CDS 14 94 2 95 PF01657.17 Stress-antifung Family 14 94 95 33.3 5.8e-08 1 No_clan
Cotton_A_33667_CDS 115 203 109 204 PF01657.17 Stress-antifung Family 9 94 95 40.1 4.4e-10 1 No_clan
Cotton_A_33667_CDS 286 559 285 562 PF00069.25 Pkinase Domain 2 259 264 151.2 3.4e-44 1 CL0016
Cotton_A_28008_CDS 1 80 1 88 PF00464.19 SHMT Domain 19 98 399 101.7 3.3e-29 1 CL0061
Cotton_A_20416_CDS 44 201 44 204 PF01554.18 MatE Family 1 158 161 96.1 1.7e-27 1 CL0222
Cotton_A_20416_CDS 265 426 265 428 PF01554.18 MatE Family 1 159 161 89.2 2.2e-25 1 CL0222
Cotton_A_38754_CDS 38 134 32 148 PF08378.11 NERD Family 8 99 108 40.1 3.9e-10 1 CL0236
Cotton_A_10120_CDS 164 396 161 397 PF00931.22 NB-ARC Domain 4 251 252 162.0 1.4e-47 1 CL0023
Cotton_A_10120_CDS 595 651 594 654 PF13855.6 LRR_8 Repeat 2 58 61 31.2 1.3e-07 1 CL0022
Cotton_A_04779_CDS 29 446 29 471 PF00067.22 p450 Domain 1 438 463 238.9 9.8e-71 1 No_clan
Cotton_A_20833_CDS 27 103 27 103 PF03134.19 TB2_DP1_HVA22 Family 1 77 77 78.5 2.6e-22 1 No_clan
Cotton_A_20833_CDS 221 245 221 245 PF12874.7 zf-met Domain 1 25 25 37.6 1.9e-09 1 CL0361
Cotton_A_20833_CDS 358 382 358 382 PF12874.7 zf-met Domain 1 25 25 20.6 0.00041 1 CL0361
Cotton_A_33419_CDS 5 110 4 120 PF04535.12 DUF588 Domain 2 108 150 57.0 1.8e-15 1 CL0396
Cotton_A_00331_CDS 29 154 29 158 PF04934.14 Med6 Family 1 128 133 143.8 2.5e-42 1 No_clan
Cotton_A_21428_CDS 36 96 18 99 PF15511.6 CENP-T_C Domain 19 79 108 34.4 1.8e-08 1 CL0012
Cotton_A_05726_CDS 5 333 2 333 PF03224.14 V-ATPase_H_N Family 4 315 315 269.3 4.6e-80 1 CL0020
Cotton_A_05726_CDS 339 451 339 454 PF11698.8 V-ATPase_H_C Family 1 113 117 129.8 5.1e-38 1 CL0020
Cotton_A_24062_CDS 58 426 57 463 PF07690.16 MFS_1 Family 2 351 353 66.7 1.7e-18 1 CL0015
Cotton_A_28113_CDS 6 91 5 99 PF12796.7 Ank_2 Repeat 2 73 83 27.8 2.9e-06 1 CL0465
Cotton_A_28113_CDS 109 215 109 216 PF12796.7 Ank_2 Repeat 1 82 83 36.6 5.2e-09 1 CL0465
Cotton_A_24070_CDS 19 101 19 102 PF00708.18 Acylphosphatase Domain 1 84 85 83.1 1.4e-23 1 CL0622
Cotton_A_33922_CDS 67 108 67 121 PF14226.6 DIOX_N Family 1 41 118 44.2 2.8e-11 1 CL0029
Cotton_A_28928_CDS 118 768 117 768 PF07814.13 WAPL Family 2 368 368 294.5 9e-88 1 No_clan
Cotton_A_38637_CDS 21 320 15 321 PF12819.7 Malectin_like Domain 9 335 336 160.8 4.6e-47 1 CL0202
Cotton_A_38637_CDS 571 787 569 840 PF07714.17 Pkinase_Tyr Domain 4 206 259 148.5 2.1e-43 1 CL0016
Cotton_A_31029_CDS 39 87 37 88 PF00847.20 AP2 Domain 3 53 54 42.5 5.5e-11 1 CL0081
Cotton_A_35627_CDS 71 266 71 267 PF00504.21 Chloroa_b-bind Family 1 160 161 161.4 2.5e-47 1 No_clan
Cotton_A_03018_CDS 67 123 67 123 PF13857.6 Ank_5 Repeat 1 56 56 34.0 2.6e-08 1 CL0465
Cotton_A_03018_CDS 453 500 451 500 PF13920.6 zf-C3HC4_3 Domain 3 50 50 46.7 2e-12 1 CL0229
Cotton_A_36527_CDS 41 64 38 67 PF01535.20 PPR Family 4 27 31 19.1 0.0011 1 CL0020
Cotton_A_36527_CDS 66 112 66 115 PF13041.6 PPR_2 Repeat 1 47 50 33.6 3.3e-08 1 CL0020
Cotton_A_36527_CDS 142 162 139 168 PF01535.20 PPR Family 4 24 31 13.9 0.05 1 CL0020
Cotton_A_36527_CDS 168 216 167 216 PF13041.6 PPR_2 Repeat 2 50 50 42.6 5.2e-11 1 CL0020
Cotton_A_36527_CDS 271 322 270 324 PF13041.6 PPR_2 Repeat 2 48 50 42.0 7.6e-11 1 CL0020
Cotton_A_36527_CDS 377 424 376 425 PF13041.6 PPR_2 Repeat 2 49 50 35.5 8.2e-09 1 CL0020
Cotton_A_36527_CDS 477 524 477 526 PF13041.6 PPR_2 Repeat 1 48 50 40.8 1.9e-10 1 CL0020
Cotton_A_00913_CDS 71 122 71 122 PF00847.20 AP2 Domain 1 54 54 53.8 1.6e-14 1 CL0081
Cotton_A_09137_CDS 2 108 1 109 PF00270.29 DEAD Domain 9 126 176 47.2 2.1e-12 1 CL0023
Cotton_A_09137_CDS 156 233 145 248 PF00271.31 Helicase_C Family 13 90 111 63.3 2.3e-17 1 CL0023
Cotton_A_04240_CDS 135 275 126 276 PF00005.27 ABC_tran Domain 10 136 137 63.7 2.4e-17 1 CL0023
Cotton_A_04240_CDS 435 645 433 645 PF01061.24 ABC2_membrane Family 3 210 210 84.2 8e-24 1 CL0181
Cotton_A_01796_CDS 202 225 201 226 PF00642.24 zf-CCCH Family 2 26 27 27.9 1.5e-06 1 CL0537
Cotton_A_01796_CDS 361 406 358 418 PF00076.22 RRM_1 Domain 10 58 70 24.8 1.4e-05 1 CL0221
Cotton_A_18484_CDS 127 314 124 314 PF03462.18 PCRF Domain 4 193 193 174.5 2.2e-51 1 No_clan
Cotton_A_18484_CDS 326 433 322 433 PF00472.20 RF-1 Family 4 116 116 124.0 2.8e-36 1 CL0337
Cotton_A_37705_CDS 138 577 138 578 PF00854.21 PTR2 Family 1 394 395 276.6 3e-82 1 CL0015
Cotton_A_10561_CDS 175 339 174 340 PF04802.15 SMK-1 Family 2 167 191 189.7 4.6e-56 1 No_clan
Cotton_A_19669_CDS 424 730 424 746 PF01103.23 Bac_surface_Ag Family 1 290 324 55.0 8.7e-15 1 CL0193
Cotton_A_13998_CDS 24 305 21 305 PF03096.14 Ndr Domain 4 283 283 363.6 4.2e-109 1 CL0028
Cotton_A_16533_CDS 133 228 129 230 PF13426.7 PAS_9 Domain 6 101 104 44.9 1.1e-11 1 CL0183
Cotton_A_16533_CDS 487 733 487 739 PF07714.17 Pkinase_Tyr Domain 1 253 259 214.0 2.2e-63 1 CL0016
Cotton_A_09698_CDS 114 316 114 352 PF00069.25 Pkinase Domain 1 200 264 207.5 2.2e-61 1 CL0016
Cotton_A_01569_CDS 6 112 6 135 PF02365.15 NAM Family 1 103 126 95.2 5.3e-27 1 No_clan
Cotton_A_06605_CDS 167 260 165 270 PF00078.27 RVT_1 Family 16 112 222 36.8 2.9e-09 1 CL0027
Cotton_A_06605_CDS 480 575 475 610 PF01348.21 Intron_maturas2 Family 7 103 140 26.7 4.5e-06 1 CL0359
Cotton_A_20537_CDS 49 222 47 234 PF03140.15 DUF247 Family 3 182 397 102.0 4.2e-29 1 No_clan
Cotton_A_29550_CDS 46 93 43 94 PF00076.22 RRM_1 Domain 22 69 70 31.7 1e-07 1 CL0221
Cotton_A_03301_CDS 2 142 1 147 PF03371.15 PRP38 Family 19 168 174 170.4 3.3e-50 1 No_clan
Cotton_A_03301_CDS 158 255 156 262 PF12871.7 PRP38_assoc Domain 2 99 100 31.6 1.9e-07 1 No_clan
Cotton_A_05529_CDS 293 339 291 340 PF13920.6 zf-C3HC4_3 Domain 3 49 50 51.2 8e-14 1 CL0229
Cotton_A_33723_CDS 4 138 3 140 PF05659.11 RPW8 Family 2 137 139 133.8 3.2e-39 1 No_clan
Cotton_A_33723_CDS 178 386 175 411 PF00931.22 NB-ARC Domain 4 222 252 91.1 6.2e-26 1 CL0023
Cotton_A_10235_CDS 26 139 26 231 PF01926.23 MMR_HSR1 Family 1 95 114 77.1 1e-21 1 CL0023
Cotton_A_10235_CDS 304 387 304 387 PF06071.13 YchF-GTPase_C Domain 1 84 84 135.8 4.3e-40 1 CL0072
Cotton_A_27349_CDS 126 368 66 371 PF00933.21 Glyco_hydro_3 Domain 85 314 319 131.5 4.1e-38 1 CL0058
Cotton_A_27349_CDS 414 643 414 643 PF01915.22 Glyco_hydro_3_C Domain 1 204 204 172.9 7.9e-51 1 No_clan
Cotton_A_27349_CDS 704 770 703 772 PF14310.6 Fn3-like Family 2 69 71 36.2 4.6e-09 1 CL0159
Cotton_A_31673_CDS 9 294 1 311 PF12819.7 Malectin_like Domain 59 315 336 104.1 8.4e-30 1 CL0202
Cotton_A_26828_CDS 13 238 13 238 PF00244.20 14-3-3 Domain 1 222 222 342.7 8.2e-103 1 No_clan
Cotton_A_21621_CDS 22 135 20 136 PF00787.24 PX Domain 3 112 113 82.2 2.5e-23 1 No_clan
Cotton_A_21621_CDS 181 404 172 405 PF09325.10 Vps5 Domain 10 235 236 81.8 5.3e-23 1 CL0145
Cotton_A_21880_CDS 6 177 5 177 PF00025.21 Arf Domain 2 175 175 267.3 4.2e-80 1 CL0023
Cotton_A_27236_CDS 56 250 55 251 PF00009.27 GTP_EFTU Domain 2 193 194 174.0 2.5e-51 1 CL0023
Cotton_A_27236_CDS 454 537 453 541 PF00679.24 EFG_C Domain 2 83 89 65.9 2.5e-18 1 CL0437
Cotton_A_27023_CDS 64 193 64 198 PF07816.11 DUF1645 Family 1 95 191 26.7 7.4e-06 1 No_clan
Cotton_A_28552_CDS 34 146 32 148 PF07732.15 Cu-oxidase_3 Domain 3 117 119 122.0 1.2e-35 1 CL0026
Cotton_A_28552_CDS 159 295 158 296 PF00394.22 Cu-oxidase Domain 2 158 159 136.6 8e-40 1 CL0026
Cotton_A_28552_CDS 379 513 376 516 PF07731.14 Cu-oxidase_2 Domain 4 134 137 97.6 5e-28 1 CL0026
Cotton_A_38488_CDS 182 297 179 299 PF00651.31 BTB Domain 4 109 111 89.1 2e-25 1 CL0033
Cotton_A_13336_CDS 12 73 10 74 PF13499.6 EF-hand_7 Domain 3 70 71 56.2 3.5e-15 1 CL0220
Cotton_A_13336_CDS 83 146 83 147 PF13499.6 EF-hand_7 Domain 1 70 71 66.9 1.6e-18 1 CL0220
Cotton_A_19755_CDS 30 109 30 109 PF05922.16 Inhibitor_I9 Domain 1 82 82 61.9 7e-17 1 CL0570
Cotton_A_19755_CDS 135 511 134 517 PF00082.22 Peptidase_S8 Domain 2 216 298 75.0 5.7e-21 1 No_clan
Cotton_A_29263_CDS 47 87 43 87 PF02671.21 PAH Repeat 5 45 45 40.8 1.8e-10 1 No_clan
Cotton_A_29263_CDS 118 162 117 162 PF02671.21 PAH Repeat 2 45 45 25.6 9.9e-06 1 No_clan
Cotton_A_27482_CDS 49 104 49 116 PF00550.25 PP-binding Domain 1 55 67 43.6 2.7e-11 1 CL0314
Cotton_A_22954_CDS 9 618 9 618 PF00012.20 HSP70 Family 1 599 599 870.7 4.1e-262 1 CL0108
Cotton_A_05492_CDS 11 87 8 113 PF18052.1 Rx_N Domain 4 83 93 39.5 4.9e-10 1 No_clan
Cotton_A_26492_CDS 4 126 4 130 PF02966.16 DIM1 Domain 1 119 133 191.9 3.4e-57 1 CL0172
Cotton_A_16218_CDS 107 165 103 168 PF09011.10 HMG_box_2 Domain 7 70 73 30.7 3.6e-07 1 CL0114
Cotton_A_34065_CDS 5 50 3 50 PF00249.31 Myb_DNA-binding Domain 3 46 46 53.3 2.2e-14 1 CL0123
Cotton_A_34065_CDS 56 99 56 102 PF00249.31 Myb_DNA-binding Domain 1 43 46 43.0 3.8e-11 1 CL0123
Cotton_A_13950_CDS 143 169 143 170 PF01535.20 PPR Family 4 30 31 18.8 0.0014 1 CL0020
Cotton_A_13950_CDS 171 201 171 201 PF01535.20 PPR Family 1 31 31 16.3 0.0081 1 CL0020
Cotton_A_13950_CDS 269 317 269 318 PF13041.6 PPR_2 Repeat 1 49 50 30.7 2.6e-07 1 CL0020
Cotton_A_13950_CDS 346 369 345 372 PF01535.20 PPR Family 3 26 31 18.6 0.0015 1 CL0020
Cotton_A_13950_CDS 412 440 411 440 PF01535.20 PPR Family 3 31 31 13.2 0.081 1 CL0020
Cotton_A_23694_CDS 7 128 6 129 PF01775.17 Ribosomal_L18A Domain 2 120 121 185.2 3.8e-55 1 No_clan
Cotton_A_01706_CDS 80 535 76 536 PF03055.15 RPE65 Family 5 462 463 329.3 5.1e-98 1 No_clan
Cotton_A_12932_CDS 38 108 38 108 PF00076.22 RRM_1 Domain 1 70 70 75.1 2.7e-21 1 CL0221
Cotton_A_09447_CDS 173 361 135 362 PF12146.8 Hydrolase_4 Family 70 238 239 37.4 1.7e-09 1 CL0028
Cotton_A_09447_CDS 492 566 485 586 PF03982.13 DAGAT Family 118 195 297 31.3 9.5e-08 1 CL0228
Cotton_A_30298_CDS 138 205 123 213 PF12796.7 Ank_2 Repeat 21 76 83 34.9 1.7e-08 1 CL0465
Cotton_A_30298_CDS 496 607 496 609 PF13962.6 PGG Domain 1 114 116 87.0 7.5e-25 1 No_clan
Cotton_A_11788_CDS 33 309 28 319 PF00295.17 Glyco_hydro_28 Domain 5 271 325 245.9 5.3e-73 1 CL0268
Cotton_A_11788_CDS 370 680 361 694 PF00295.17 Glyco_hydro_28 Domain 9 310 325 222.9 5.3e-66 1 CL0268
Cotton_A_03725_CDS 27 112 27 112 PF05922.16 Inhibitor_I9 Domain 1 82 82 50.3 2.8e-13 1 CL0570
Cotton_A_03725_CDS 140 617 140 617 PF00082.22 Peptidase_S8 Domain 1 298 298 152.7 1.2e-44 1 No_clan
Cotton_A_03725_CDS 397 471 379 473 PF02225.22 PA Family 20 87 89 29.3 6.6e-07 1 CL0364
Cotton_A_03725_CDS 670 765 670 765 PF17766.1 fn3_6 Domain 1 99 99 102.5 1.1e-29 1 CL0159
Cotton_A_11583_CDS 156 413 156 414 PF07859.13 Abhydrolase_3 Domain 1 210 211 222.5 5.2e-66 1 CL0028
Cotton_A_35594_CDS 534 656 534 656 PF12932.7 Sec16 Domain 1 118 118 60.7 2e-16 1 No_clan
Cotton_A_35594_CDS 718 974 718 986 PF12931.7 Sec16_C Domain 1 269 302 181.2 3.5e-53 1 No_clan
Cotton_A_37095_CDS 34 89 34 89 PF04863.13 EGF_alliinase Domain 1 55 55 96.2 1.1e-27 1 CL0001
Cotton_A_08563_CDS 2 318 1 326 PF00155.21 Aminotran_1_2 Domain 74 355 363 124.3 6.4e-36 1 CL0061
Cotton_A_16396_CDS 55 369 55 369 PF03595.17 SLAC1 Family 1 324 324 167.0 6.1e-49 1 No_clan
Cotton_A_02505_CDS 15 128 14 129 PF07732.15 Cu-oxidase_3 Domain 2 117 119 128.1 1.6e-37 1 CL0026
Cotton_A_02505_CDS 140 282 140 283 PF00394.22 Cu-oxidase Domain 1 158 159 127.3 5.7e-37 1 CL0026
Cotton_A_02505_CDS 378 502 362 505 PF07731.14 Cu-oxidase_2 Domain 17 134 137 82.9 1.7e-23 1 CL0026
Cotton_A_31426_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 61.1 8.7e-17 1 CL0123
Cotton_A_31426_CDS 67 111 67 112 PF00249.31 Myb_DNA-binding Domain 1 45 46 54.1 1.3e-14 1 CL0123
Cotton_A_16677_CDS 8 105 5 112 PF10250.9 O-FucT Family 4 105 336 70.8 1.6e-19 1 CL0113
Cotton_A_28123_CDS 87 363 86 366 PF00664.23 ABC_membrane Family 2 271 274 145.1 3.1e-42 1 CL0241
Cotton_A_28123_CDS 434 578 431 579 PF00005.27 ABC_tran Domain 4 136 137 84.5 9e-24 1 CL0023
Cotton_A_28123_CDS 839 1101 834 1108 PF00664.23 ABC_membrane Family 7 267 274 137.1 8.8e-40 1 CL0241
Cotton_A_28123_CDS 1175 1323 1175 1324 PF00005.27 ABC_tran Domain 1 136 137 106.2 1.9e-30 1 CL0023
Cotton_A_35757_CDS 25 82 21 86 PF10249.9 NDUFB10 Family 38 95 126 22.4 0.00013 1 No_clan
Cotton_A_32967_CDS 35 96 34 96 PF00226.31 DnaJ Domain 2 63 63 89.2 1.4e-25 1 CL0392
Cotton_A_01920_CDS 3 106 3 106 PF00044.24 Gp_dh_N Domain 1 101 101 114.4 2.6e-33 1 CL0063
Cotton_A_01920_CDS 158 315 158 315 PF02800.20 Gp_dh_C Domain 1 158 158 237.9 3.6e-71 1 CL0139
Cotton_A_20236_CDS 94 253 94 254 PF14543.6 TAXi_N Domain 1 177 178 132.7 1.7e-38 1 CL0129
Cotton_A_20236_CDS 276 422 275 425 PF14541.6 TAXi_C Domain 2 158 161 99.6 1.5e-28 1 CL0129
Cotton_A_03092_CDS 11 96 9 122 PF18052.1 Rx_N Domain 3 88 93 77.3 8.2e-22 1 No_clan
Cotton_A_03092_CDS 172 416 171 417 PF00931.22 NB-ARC Domain 2 251 252 156.8 5.4e-46 1 CL0023
Cotton_A_26368_CDS 26 254 24 274 PF00398.20 RrnaAD Domain 3 240 265 216.9 2.5e-64 1 CL0063
Cotton_A_20963_CDS 28 81 28 103 PF04777.13 Evr1_Alr Family 1 57 100 57.1 1.9e-15 1 No_clan
Cotton_A_10937_CDS 431 469 430 470 PF00514.23 Arm Repeat 2 40 41 25.0 1.3e-05 1 CL0020
Cotton_A_08367_CDS 53 89 29 101 PF02309.16 AUX_IAA Family 73 109 237 39.7 4.8e-10 1 CL0072
Cotton_A_08367_CDS 114 162 94 163 PF02309.16 AUX_IAA Family 187 235 237 96.9 1.6e-27 1 CL0072
Cotton_A_09329_CDS 44 88 44 100 PF07876.12 Dabb Domain 1 46 97 23.3 7.4e-05 1 CL0032
Cotton_A_19707_CDS 31 100 6 101 PF02362.21 B3 Family 32 100 101 33.4 3.1e-08 1 CL0405
Cotton_A_37219_CDS 33 120 32 120 PF01397.21 Terpene_synth Domain 2 106 192 75.2 5.3e-21 1 No_clan
Cotton_A_29268_CDS 79 495 79 496 PF00854.21 PTR2 Family 1 394 395 266.1 4.6e-79 1 CL0015
Cotton_A_10535_CDS 13 210 12 253 PF07795.11 DUF1635 Family 2 183 224 170.4 5.3e-50 1 No_clan
Cotton_A_12540_CDS 2 43 2 43 PF12338.8 RbcS Family 1 45 45 77.9 4.7e-22 1 No_clan
Cotton_A_12540_CDS 68 176 68 176 PF00101.20 RuBisCO_small Domain 1 97 97 133.2 2.4e-39 1 No_clan
Cotton_A_21934_CDS 59 165 59 167 PF14226.6 DIOX_N Family 2 116 118 81.4 8.3e-23 1 CL0029
Cotton_A_21934_CDS 216 308 212 311 PF03171.20 2OG-FeII_Oxy Domain 6 98 101 82.0 3.5e-23 1 CL0029
Cotton_A_06302_CDS 67 151 67 151 PF03330.18 DPBB_1 Domain 1 83 83 73.7 1.1e-20 1 CL0199
Cotton_A_06302_CDS 162 240 162 240 PF01357.21 Pollen_allerg_1 Domain 1 80 80 76.6 1.1e-21 1 CL0159
Cotton_A_18945_CDS 14 95 14 96 PF07011.11 Elf4 Domain 1 82 83 138.3 5.9e-41 1 No_clan
Cotton_A_02491_CDS 88 179 88 180 PF00686.19 CBM_20 Family 1 96 97 74.9 3.6e-21 1 CL0369
Cotton_A_09633_CDS 4 180 1 195 PF00955.21 HCO3_cotransp Family 4 174 508 128.5 3.2e-37 1 CL0062
Cotton_A_09633_CDS 201 373 183 380 PF00955.21 HCO3_cotransp Family 245 412 508 90.0 1.6e-25 1 CL0062
Cotton_A_09633_CDS 460 550 456 551 PF00955.21 HCO3_cotransp Family 423 507 508 65.0 5.7e-18 1 CL0062
Cotton_A_00369_CDS 5 377 4 377 PF00022.19 Actin Family 2 407 407 493.0 5.3e-148 1 CL0108
Cotton_A_05995_CDS 122 187 120 187 PF00462.24 Glutaredoxin Domain 3 60 60 44.4 1.4e-11 1 CL0172
Cotton_A_13147_CDS 195 215 192 216 PF01535.20 PPR Family 4 24 31 13.0 0.096 1 CL0020
Cotton_A_13147_CDS 223 251 223 253 PF01535.20 PPR Family 1 29 31 28.5 1.1e-06 1 CL0020
Cotton_A_13147_CDS 254 280 254 284 PF01535.20 PPR Family 1 27 31 21.5 0.00019 1 CL0020
Cotton_A_13147_CDS 283 311 281 311 PF12854.7 PPR_1 Repeat 6 34 34 29.5 4.5e-07 1 CL0020
Cotton_A_13147_CDS 313 363 313 364 PF13041.6 PPR_2 Repeat 1 49 50 34.6 1.6e-08 1 CL0020
Cotton_A_13147_CDS 416 463 416 465 PF13041.6 PPR_2 Repeat 1 48 50 49.4 3.7e-13 1 CL0020
Cotton_A_40134_CDS 101 201 100 205 PF04367.13 DUF502 Family 2 102 106 97.1 4.8e-28 1 No_clan
Cotton_A_20852_CDS 77 500 76 500 PF00474.17 SSF Family 2 406 406 61.3 7.6e-17 1 CL0062
Cotton_A_19472_CDS 11 129 6 129 PF00917.26 MATH Domain 12 113 113 46.2 4.1e-12 1 CL0389
Cotton_A_19472_CDS 156 275 154 277 PF00917.26 MATH Domain 3 111 113 24.2 2.8e-05 1 CL0389
Cotton_A_17618_CDS 91 151 90 151 PF00046.29 Homeodomain Domain 2 57 57 62.8 2e-17 1 CL0123
Cotton_A_27587_CDS 74 201 70 202 PF00134.23 Cyclin_N Domain 5 126 127 106.3 8.6e-31 1 CL0065
Cotton_A_27587_CDS 281 335 277 349 PF02984.19 Cyclin_C Domain 37 90 119 27.8 2.1e-06 1 CL0065
Cotton_A_13446_CDS 51 140 51 140 PF00447.17 HSF_DNA-bind Domain 1 96 96 100.0 8.9e-29 1 CL0123
Cotton_A_00641_CDS 18 224 17 224 PF00141.23 peroxidase Domain 2 229 229 160.8 4.1e-47 1 CL0617
Cotton_A_39108_CDS 18 87 18 91 PF00071.22 Ras Domain 1 70 162 86.1 1.9e-24 1 CL0023
Cotton_A_39108_CDS 124 224 123 225 PF00071.22 Ras Domain 61 161 162 107.7 4.2e-31 1 CL0023
Cotton_A_18371_CDS 43 211 43 213 PF01210.23 NAD_Gly3P_dh_N Family 1 155 157 157.6 2.3e-46 1 CL0063
Cotton_A_18371_CDS 233 380 233 381 PF07479.14 NAD_Gly3P_dh_C Domain 1 141 142 155.2 1.2e-45 1 CL0106
Cotton_A_06940_CDS 20 46 20 47 PF00036.32 EF-hand_1 Domain 1 27 29 26.6 2.5e-06 1 CL0220
Cotton_A_06940_CDS 63 82 59 82 PF13202.6 EF-hand_5 Domain 6 25 25 17.0 0.003 1 CL0220
Cotton_A_30132_CDS 95 378 94 379 PF05212.12 DUF707 Family 2 295 296 449.0 7.1e-135 1 No_clan
Cotton_A_29835_CDS 73 131 70 134 PF13499.6 EF-hand_7 Domain 4 68 71 40.2 3.4e-10 1 CL0220
Cotton_A_29835_CDS 174 237 172 238 PF13499.6 EF-hand_7 Domain 3 70 71 34.4 2.2e-08 1 CL0220
Cotton_A_25976_CDS 23 158 22 159 PF03652.15 RuvX Family 2 134 135 94.9 5e-27 1 CL0580
Cotton_A_19007_CDS 1 78 1 87 PF12796.7 Ank_2 Repeat 1 73 83 32.9 7.1e-08 1 CL0465
Cotton_A_28312_CDS 163 198 163 220 PF07571.13 TAF6_C Family 1 37 90 35.1 1.2e-08 1 CL0020
Cotton_A_31652_CDS 153 259 149 259 PF02517.16 CPBP Family 6 92 92 53.5 2.3e-14 1 CL0472
Cotton_A_05128_CDS 2 68 2 68 PF00035.26 dsrm Domain 1 67 67 58.9 6.2e-16 1 CL0196
Cotton_A_05128_CDS 88 151 88 153 PF00035.26 dsrm Domain 1 65 67 48.9 7.8e-13 1 CL0196
Cotton_A_01792_CDS 14 100 8 118 PF00651.31 BTB Domain 10 97 111 35.1 1.2e-08 1 CL0033
Cotton_A_01792_CDS 200 467 200 467 PF03000.14 NPH3 Family 1 258 258 318.7 3.2e-95 1 No_clan
Cotton_A_26662_CDS 183 286 181 287 PF03763.13 Remorin_C Family 3 106 107 94.4 3.5e-27 1 No_clan
Cotton_A_06427_CDS 140 173 140 174 PF08880.11 QLQ Domain 1 34 35 46.5 2.2e-12 1 No_clan
Cotton_A_06427_CDS 210 252 210 252 PF08879.10 WRC Domain 1 43 43 67.1 7.7e-19 1 No_clan
Cotton_A_03164_CDS 209 524 209 525 PF10250.9 O-FucT Family 1 335 336 243.1 6.3e-72 1 CL0113
Cotton_A_25224_CDS 12 99 12 102 PF01247.18 Ribosomal_L35Ae Domain 1 88 95 140.5 1.5e-41 1 CL0575
Cotton_A_02580_CDS 1 76 1 77 PF12861.7 zf-ANAPC11 Family 8 84 85 124.7 1.2e-36 1 CL0229
Cotton_A_09730_CDS 4 79 4 79 PF07297.12 DPM2 Family 1 76 76 117.3 2.7e-34 1 No_clan
Cotton_A_19864_CDS 86 188 86 189 PF06749.12 DUF1218 Family 1 90 91 69.4 2.8e-19 1 No_clan
Cotton_A_13800_CDS 1 121 1 121 PF07107.11 WI12 Domain 1 109 109 144.5 1.1e-42 1 CL0051
Cotton_A_15868_CDS 220 278 219 284 PF03478.18 DUF295 Domain 2 51 55 52.9 2e-14 1 No_clan
Cotton_A_25297_CDS 26 115 26 115 PF00447.17 HSF_DNA-bind Domain 1 96 96 99.7 1.1e-28 1 CL0123
Cotton_A_03777_CDS 58 107 58 107 PF16851.5 Stomagen Domain 1 50 50 114.4 1.6e-33 1 No_clan
Cotton_A_32738_CDS 8 123 4 123 PF08311.12 Mad3_BUB1_I Domain 10 124 124 92.2 2.3e-26 1 No_clan
Cotton_A_32738_CDS 228 443 226 458 PF00069.25 Pkinase Domain 3 194 264 44.7 1e-11 1 CL0016
Cotton_A_37716_CDS 19 105 6 105 PF02519.14 Auxin_inducible Family 6 90 90 99.6 8.6e-29 1 No_clan
Cotton_A_29509_CDS 603 975 602 977 PF00999.21 Na_H_Exchanger Family 3 379 381 205.5 1.1e-60 1 CL0064
Cotton_A_29509_CDS 1008 1121 1008 1123 PF02254.18 TrkA_N Domain 1 114 116 68.5 5.8e-19 1 CL0063
Cotton_A_07902_CDS 100 213 100 213 PF03479.15 DUF296 Domain 1 107 107 98.5 2.6e-28 1 CL0615
Cotton_A_14533_CDS 63 149 55 149 PF03485.16 Arg_tRNA_synt_N Domain 3 85 85 58.2 9.5e-16 1 No_clan
Cotton_A_14533_CDS 159 508 157 508 PF00750.19 tRNA-synt_1d Family 3 349 349 396.3 1e-118 1 CL0039
Cotton_A_14533_CDS 522 638 522 639 PF05746.15 DALR_1 Domain 1 118 119 101.3 3.7e-29 1 CL0258
Cotton_A_37425_CDS 7 105 5 114 PF00168.30 C2 Domain 3 95 103 37.3 2.6e-09 1 CL0154
Cotton_A_10114_CDS 168 383 162 396 PF00931.22 NB-ARC Domain 8 238 252 154.7 2.5e-45 1 CL0023
Cotton_A_34278_CDS 311 354 310 354 PF13639.6 zf-RING_2 Domain 2 44 44 31.3 1.9e-07 1 CL0229
Cotton_A_34278_CDS 404 450 404 451 PF00628.29 PHD Domain 1 51 52 35.2 8.5e-09 1 CL0390
Cotton_A_21793_CDS 25 301 25 312 PF00501.28 AMP-binding Family 1 271 423 160.9 3.6e-47 1 CL0378
Cotton_A_02816_CDS 24 85 15 91 PF09809.9 MRP-L27 Family 9 70 113 66.0 2.3e-18 1 No_clan
Cotton_A_23576_CDS 60 154 52 154 PF02298.17 Cu_bind_like Domain 5 84 84 56.4 2.3e-15 1 CL0026
Cotton_A_18777_CDS 169 288 150 290 PF01553.21 Acyltransferase Family 12 133 135 53.4 2e-14 1 CL0228
Cotton_A_38434_CDS 121 171 120 172 PF00847.20 AP2 Domain 2 53 54 52.8 3.4e-14 1 CL0081
Cotton_A_14429_CDS 39 80 38 80 PF03790.13 KNOX1 Family 2 43 43 56.3 1.9e-15 1 No_clan
Cotton_A_14429_CDS 98 149 98 149 PF03791.13 KNOX2 Family 1 48 48 65.4 2.3e-18 1 No_clan
Cotton_A_14429_CDS 246 285 246 285 PF05920.11 Homeobox_KN Family 1 40 40 63.6 1.1e-17 1 CL0123
Cotton_A_08630_CDS 30 238 30 238 PF01734.22 Patatin Family 1 204 204 77.1 2.1e-21 1 CL0323
Cotton_A_09115_CDS 52 114 50 115 PF00690.26 Cation_ATPase_N Domain 4 68 69 49.8 2e-13 1 No_clan
Cotton_A_09115_CDS 163 341 161 342 PF00122.20 E1-E2_ATPase Family 3 180 181 163.3 4e-48 1 No_clan
Cotton_A_09115_CDS 358 635 358 635 PF00702.26 Hydrolase Domain 1 210 210 70.0 3.3e-19 1 CL0137
Cotton_A_27472_CDS 105 202 105 203 PF08241.12 Methyltransf_11 Domain 1 95 96 73.8 1.4e-20 1 CL0063
Cotton_A_27472_CDS 277 342 277 342 PF08498.10 Sterol_MT_C Family 1 66 66 113.0 6.1e-33 1 No_clan
Cotton_A_12434_CDS 52 149 43 149 PF01477.23 PLAT Domain 16 117 117 75.2 6.1e-21 1 CL0321
Cotton_A_12434_CDS 162 833 162 833 PF00305.19 Lipoxygenase Domain 1 674 674 1068.2 0 1 No_clan
Cotton_A_33814_CDS 30 68 28 69 PF08263.12 LRRNT_2 Family 3 40 41 32.1 1.1e-07 1 No_clan
Cotton_A_33814_CDS 195 253 194 254 PF13855.6 LRR_8 Repeat 3 60 61 35.5 6.3e-09 1 CL0022
Cotton_A_33814_CDS 586 644 584 644 PF13855.6 LRR_8 Repeat 3 61 61 30.3 2.6e-07 1 CL0022
Cotton_A_33814_CDS 777 980 776 1048 PF00069.25 Pkinase Domain 2 201 264 138.3 2.9e-40 1 CL0016
Cotton_A_33814_CDS 1065 1265 1064 1279 PF00069.25 Pkinase Domain 2 198 264 120.8 6.3e-35 1 CL0016
Cotton_A_08104_CDS 265 332 263 333 PF04564.15 U-box Domain 5 72 73 55.9 3.5e-15 1 CL0229
Cotton_A_08104_CDS 543 572 532 572 PF00514.23 Arm Repeat 12 41 41 23.6 3.6e-05 1 CL0020
Cotton_A_08104_CDS 932 961 925 963 PF00514.23 Arm Repeat 10 39 41 21.3 0.0002 1 CL0020
Cotton_A_29020_CDS 16 78 15 79 PF02953.15 zf-Tim10_DDP Domain 2 63 64 68.9 2.1e-19 1 No_clan
Cotton_A_36388_CDS 56 104 55 105 PF13833.6 EF-hand_8 Domain 2 52 55 33.7 2.3e-08 1 CL0220
Cotton_A_36388_CDS 164 222 159 223 PF13499.6 EF-hand_7 Domain 6 70 71 32.6 8.1e-08 1 CL0220
Cotton_A_35766_CDS 32 244 32 244 PF00314.17 Thaumatin Domain 1 214 214 270.7 8.1e-81 1 CL0293
Cotton_A_08426_CDS 60 241 57 277 PF05148.15 Methyltransf_8 Family 4 181 219 232.4 5.4e-69 1 CL0063
Cotton_A_08426_CDS 239 441 229 441 PF07714.17 Pkinase_Tyr Domain 61 259 259 148.8 1.7e-43 1 CL0016
Cotton_A_04120_CDS 58 311 58 313 PF00685.27 Sulfotransfer_1 Domain 1 265 267 201.7 1.5e-59 1 CL0023
Cotton_A_26381_CDS 48 142 47 144 PF12894.7 ANAPC4_WD40 Repeat 2 90 92 22.0 0.00015 1 CL0186
Cotton_A_03238_CDS 13 133 13 133 PF13238.6 AAA_18 Domain 1 130 130 106.5 1.4e-30 1 CL0023
Cotton_A_40608_CDS 46 226 6 226 PF00230.20 MIP Family 49 227 227 47.0 2.5e-12 1 No_clan
Cotton_A_09533_CDS 486 556 482 556 PF16135.5 Jas Family 5 76 76 72.6 2.2e-20 1 No_clan
Cotton_A_09533_CDS 585 626 584 627 PF00628.29 PHD Domain 2 51 52 29.1 6.6e-07 1 CL0390
Cotton_A_36884_CDS 4 102 4 106 PF03195.14 LOB Family 1 94 99 78.3 5.2e-22 1 No_clan
Cotton_A_17455_CDS 102 202 101 203 PF00636.26 Ribonuclease_3 Family 2 104 105 45.9 6.8e-12 1 CL0539
Cotton_A_13471_CDS 159 266 158 266 PF03168.13 LEA_2 Domain 2 101 101 25.5 1.4e-05 1 CL0159
Cotton_A_21203_CDS 35 145 5 145 PF08613.11 Cyclin Family 49 161 161 132.5 1.8e-38 1 CL0065
Cotton_A_03260_CDS 105 270 104 271 PF01764.25 Lipase_3 Family 2 141 142 119.5 9.8e-35 1 CL0028
Cotton_A_22165_CDS 72 251 71 251 PF14543.6 TAXi_N Domain 2 178 178 125.3 3.1e-36 1 CL0129
Cotton_A_22165_CDS 276 411 270 412 PF14541.6 TAXi_C Domain 7 160 161 60.1 2.1e-16 1 CL0129
Cotton_A_01522_CDS 14 151 14 151 PF00168.30 C2 Domain 1 103 103 77.8 6.4e-22 1 CL0154
Cotton_A_01522_CDS 356 390 355 390 PF00614.22 PLDc Family 2 28 28 24.3 2.4e-05 1 CL0479
Cotton_A_08671_CDS 28 160 28 161 PF02365.15 NAM Family 1 125 126 81.5 9.4e-23 1 No_clan
Cotton_A_24179_CDS 33 91 31 91 PF00046.29 Homeodomain Domain 3 55 57 58.7 3.6e-16 1 CL0123
Cotton_A_16566_CDS 15 214 13 222 PF00378.20 ECH_1 Domain 4 201 251 133.0 1.1e-38 1 CL0127
Cotton_A_16566_CDS 313 491 313 492 PF02737.18 3HCDH_N Domain 1 179 180 200.1 2.6e-59 1 CL0063
Cotton_A_16566_CDS 494 587 494 587 PF00725.22 3HCDH Domain 1 97 97 69.6 2.6e-19 1 CL0106
Cotton_A_26276_CDS 97 124 97 131 PF00786.28 PBD Domain 1 29 59 26.4 6.5e-06 1 No_clan
Cotton_A_26276_CDS 160 294 160 300 PF00620.27 RhoGAP Domain 1 145 152 75.6 3.5e-21 1 CL0409
Cotton_A_01148_CDS 146 314 146 315 PF14543.6 TAXi_N Domain 1 177 178 173.3 5.6e-51 1 CL0129
Cotton_A_01148_CDS 339 485 338 486 PF14541.6 TAXi_C Domain 2 160 161 95.1 3.5e-27 1 CL0129
Cotton_A_14032_CDS 50 154 50 154 PF00011.21 HSP20 Family 1 102 102 102.2 1.5e-29 1 CL0190
Cotton_A_34833_CDS 98 330 97 330 PF01716.18 MSP Family 2 241 241 324.4 3.4e-97 1 CL0193
Cotton_A_30776_CDS 5 87 5 128 PF18052.1 Rx_N Domain 1 84 93 66.6 1.8e-18 1 No_clan
Cotton_A_30776_CDS 197 399 192 400 PF00931.22 NB-ARC Domain 47 251 252 152.5 1.1e-44 1 CL0023
Cotton_A_25467_CDS 147 449 147 453 PF00850.19 Hist_deacetyl Domain 1 303 307 262.9 4.4e-78 1 CL0302
Cotton_A_25455_CDS 133 169 119 169 PF12906.7 RINGv Domain 11 48 48 24.5 2.1e-05 1 CL0229
Cotton_A_24325_CDS 28 290 28 290 PF14932.6 HAUS-augmin3 Family 1 260 260 236.8 3e-70 1 No_clan
Cotton_A_18279_CDS 20 557 14 561 PF07058.11 MAP70 Family 10 541 554 680.5 1.9e-204 1 No_clan
Cotton_A_29922_CDS 282 429 267 437 PF00201.18 UDPGT Family 274 414 499 83.7 1.2e-23 1 CL0113
Cotton_A_08325_CDS 29 185 27 197 PF00069.25 Pkinase Domain 4 153 264 112.6 2e-32 1 CL0016
Cotton_A_14816_CDS 44 91 44 91 PF00249.31 Myb_DNA-binding Domain 1 46 46 45.5 6.5e-12 1 CL0123
Cotton_A_14816_CDS 97 140 97 141 PF00249.31 Myb_DNA-binding Domain 1 44 46 49.1 4.6e-13 1 CL0123
Cotton_A_11556_CDS 17 84 2 145 PF02458.15 Transferase Family 15 79 434 23.6 1.7e-05 1 CL0149
Cotton_A_02675_CDS 24 115 21 116 PF17900.1 Peptidase_M1_N Domain 4 97 186 37.9 2e-09 1 CL0672
Cotton_A_21431_CDS 53 85 53 87 PF16211.5 Histone_H2A_C Family 1 33 35 59.0 2.7e-16 1 No_clan
Cotton_A_04152_CDS 106 232 104 241 PF00675.20 Peptidase_M16 Family 5 141 149 118.6 2.2e-34 1 CL0094
Cotton_A_04152_CDS 265 442 264 447 PF05193.21 Peptidase_M16_C Domain 4 177 183 39.5 5.8e-10 1 CL0094
Cotton_A_04152_CDS 452 736 452 737 PF16187.5 Peptidase_M16_M Family 1 278 279 269.1 3.9e-80 1 CL0094
Cotton_A_04152_CDS 741 925 740 926 PF05193.21 Peptidase_M16_C Domain 2 182 183 41.6 1.3e-10 1 CL0094
Cotton_A_24503_CDS 95 254 95 255 PF14543.6 TAXi_N Domain 1 177 178 133.0 1.3e-38 1 CL0129
Cotton_A_24503_CDS 277 418 276 421 PF14541.6 TAXi_C Domain 2 158 161 102.9 1.5e-29 1 CL0129
Cotton_A_29650_CDS 69 295 69 296 PF03087.14 DUF241 Family 1 233 234 210.5 3e-62 1 CL0133
Cotton_A_22217_CDS 102 300 102 301 PF03145.16 Sina Family 1 199 200 267.1 1.1e-79 1 CL0389
Cotton_A_39173_CDS 34 210 34 210 PF00197.18 Kunitz_legume Domain 1 175 175 143.1 8e-42 1 CL0066
Cotton_A_19811_CDS 215 277 215 277 PF01485.21 IBR Domain 1 62 62 59.2 3.3e-16 1 CL0229
Cotton_A_19811_CDS 298 341 282 351 PF01485.21 IBR Domain 15 57 62 36.4 4.4e-09 1 CL0229
Cotton_A_38839_CDS 104 286 97 287 PF00544.19 Pec_lyase_C Domain 30 210 211 79.9 1.8e-22 1 CL0268
Cotton_A_09464_CDS 86 267 86 269 PF03031.18 NIF Family 1 155 156 85.0 4.4e-24 1 CL0137
Cotton_A_27643_CDS 83 124 67 124 PF05498.11 RALF Family 18 65 65 24.0 5.8e-05 1 No_clan
Cotton_A_14733_CDS 73 266 73 266 PF03798.16 TRAM_LAG1_CLN8 Domain 1 198 198 109.8 1.4e-31 1 No_clan
Cotton_A_21562_CDS 35 149 34 149 PF08240.12 ADH_N Domain 2 109 109 90.4 6.1e-26 1 CL0296
Cotton_A_21562_CDS 191 312 191 315 PF00107.26 ADH_zinc_N Family 1 127 130 66.4 2.4e-18 1 CL0063
Cotton_A_19031_CDS 258 427 257 429 PF00069.25 Pkinase Domain 2 168 264 168.8 1.4e-49 1 CL0016
Cotton_A_26870_CDS 5 167 5 168 PF13967.6 RSN1_TM Family 1 155 156 107.7 4.7e-31 1 No_clan
Cotton_A_26870_CDS 212 332 189 332 PF14703.6 PHM7_cyt Domain 43 176 176 99.4 2.7e-28 1 CL0221
Cotton_A_26870_CDS 343 614 343 614 PF02714.15 RSN1_7TM Family 1 274 274 257.1 1.8e-76 1 CL0416
Cotton_A_26087_CDS 9 162 7 162 PF07468.11 Agglutinin Domain 3 153 153 62.9 3.9e-17 1 CL0066
Cotton_A_26087_CDS 172 300 168 303 PF07468.11 Agglutinin Domain 7 148 153 64.3 1.4e-17 1 CL0066
Cotton_A_26087_CDS 315 438 304 449 PF01117.20 Aerolysin Domain 89 213 365 27.3 2e-06 1 CL0345
Cotton_A_03736_CDS 102 205 98 208 PF11210.8 DUF2996 Family 5 118 121 52.4 6.8e-14 1 No_clan
Cotton_A_21580_CDS 82 216 80 218 PF01565.23 FAD_binding_4 Domain 3 136 139 87.8 5.2e-25 1 CL0077
Cotton_A_21580_CDS 472 530 472 530 PF08031.12 BBE Domain 1 46 46 76.9 8.9e-22 1 CL0277
Cotton_A_08728_CDS 191 248 191 248 PF03106.15 WRKY Domain 1 59 59 95.6 1.5e-27 1 CL0274
Cotton_A_19929_CDS 289 328 284 328 PF01753.18 zf-MYND Domain 4 38 38 31.0 2e-07 1 CL0175
Cotton_A_10481_CDS 259 403 245 414 PF00201.18 UDPGT Family 265 407 499 66.0 2.8e-18 1 CL0113
Cotton_A_03645_CDS 93 186 87 194 PF03004.14 Transposase_24 Family 7 103 142 53.8 2.1e-14 1 No_clan
Cotton_A_30872_CDS 166 499 126 501 PF00654.20 Voltage_CLC Family 40 352 354 226.5 5.6e-67 1 No_clan
Cotton_A_30872_CDS 571 622 571 626 PF00571.28 CBS Domain 1 52 57 28.3 1.8e-06 1 No_clan
Cotton_A_21999_CDS 211 538 211 539 PF00344.20 SecY Family 1 305 306 210.8 2.7e-62 1 No_clan
Cotton_A_33029_CDS 173 187 170 188 PF13516.6 LRR_6 Repeat 4 18 24 11.7 0.22 1 CL0022
Cotton_A_03479_CDS 79 132 79 133 PF14416.6 PMR5N Domain 1 52 53 72.2 3.2e-20 1 No_clan
Cotton_A_03479_CDS 134 166 134 167 PF13839.6 PC-Esterase Family 1 33 283 37.1 2.8e-09 1 CL0264
Cotton_A_03479_CDS 167 394 166 394 PF13839.6 PC-Esterase Family 63 283 283 226.6 5.1e-67 1 CL0264
Cotton_A_14019_CDS 55 185 55 185 PF03641.14 Lysine_decarbox Family 1 132 132 135.6 1e-39 1 CL0349
Cotton_A_08320_CDS 82 212 80 212 PF02531.16 PsaD Family 3 136 136 228.3 1.8e-68 1 No_clan
Cotton_A_08052_CDS 48 135 48 135 PF00736.19 EF1_GNE Domain 1 90 90 115.7 8e-34 1 No_clan
Cotton_A_00654_CDS 6 313 5 325 PF06273.11 eIF-4B Family 2 305 502 191.7 2.6e-56 1 No_clan
Cotton_A_15891_CDS 40 365 40 365 PF00009.27 GTP_EFTU Domain 1 194 194 217.6 1.1e-64 1 CL0023
Cotton_A_15891_CDS 417 490 415 491 PF03144.25 GTP_EFTU_D2 Domain 4 73 74 41.7 1.1e-10 1 CL0575
Cotton_A_15891_CDS 510 572 508 579 PF14492.6 EFG_II Domain 4 67 75 44.5 1.2e-11 1 CL0437
Cotton_A_15891_CDS 634 745 628 745 PF03764.18 EFG_IV Domain 11 121 121 108.3 1.9e-31 1 CL0329
Cotton_A_15891_CDS 747 833 747 835 PF00679.24 EFG_C Domain 1 86 89 72.8 1.8e-20 1 CL0437
Cotton_A_26148_CDS 48 155 48 155 PF13409.6 GST_N_2 Domain 1 70 70 66.1 2.5e-18 1 CL0172
Cotton_A_26148_CDS 203 270 200 272 PF13410.6 GST_C_2 Domain 4 66 69 35.6 7e-09 1 CL0497
Cotton_A_16883_CDS 138 169 136 169 PF00515.28 TPR_1 Repeat 3 34 34 31.6 9.5e-08 1 CL0020
Cotton_A_16883_CDS 171 203 170 203 PF07719.17 TPR_2 Repeat 2 34 34 26.7 3.5e-06 1 CL0020
Cotton_A_36378_CDS 45 294 45 321 PF03595.17 SLAC1 Family 1 257 324 121.2 5.4e-35 1 No_clan
Cotton_A_09721_CDS 15 62 15 62 PF00249.31 Myb_DNA-binding Domain 1 46 46 62.1 4e-17 1 CL0123
Cotton_A_09721_CDS 68 106 68 107 PF00249.31 Myb_DNA-binding Domain 1 39 46 44.2 1.6e-11 1 CL0123
Cotton_A_13149_CDS 23 204 23 205 PF13419.6 HAD_2 Family 1 177 178 99.5 2.3e-28 1 CL0137
Cotton_A_13973_CDS 14 122 13 123 PF01776.17 Ribosomal_L22e Family 2 109 109 158.4 6.7e-47 1 No_clan
Cotton_A_20912_CDS 386 429 386 430 PF11331.8 zinc_ribbon_12 Family 1 44 45 67.1 8.6e-19 1 CL0167
Cotton_A_34077_CDS 24 180 23 180 PF04535.12 DUF588 Domain 2 150 150 132.6 9.7e-39 1 CL0396
Cotton_A_14159_CDS 60 327 58 329 PF00069.25 Pkinase Domain 4 260 264 164.0 4.3e-48 1 CL0016
Cotton_A_15378_CDS 152 218 152 218 PF00462.24 Glutaredoxin Domain 1 60 60 43.9 2.1e-11 1 CL0172
Cotton_A_04431_CDS 25 301 23 301 PF00814.25 Peptidase_M22 Family 3 271 271 305.4 4.3e-91 1 CL0108
Cotton_A_38594_CDS 40 202 39 209 PF00067.22 p450 Domain 2 168 463 84.5 6.5e-24 1 No_clan
Cotton_A_38594_CDS 205 469 200 473 PF00067.22 p450 Domain 198 459 463 239.5 6.1e-71 1 No_clan
Cotton_A_30385_CDS 2 136 1 138 PF00005.27 ABC_tran Domain 14 135 137 78.9 4.8e-22 1 CL0023
Cotton_A_39862_CDS 116 344 115 345 PF00149.28 Metallophos Domain 2 203 204 140.0 1.4e-40 1 CL0163
Cotton_A_13501_CDS 4 440 4 451 PF00067.22 p450 Domain 1 449 463 278.1 1.2e-82 1 No_clan
Cotton_A_19896_CDS 52 117 14 119 PF03004.14 Transposase_24 Family 57 128 142 27.1 3.7e-06 1 No_clan
Cotton_A_18964_CDS 205 337 205 338 PF00004.29 AAA Domain 1 131 132 134.8 2.4e-39 1 CL0023
Cotton_A_18964_CDS 360 403 360 404 PF17862.1 AAA_lid_3 Domain 1 44 45 40.4 1.8e-10 1 CL0671
Cotton_A_12229_CDS 29 481 28 482 PF00232.18 Glyco_hydro_1 Domain 2 451 453 452.2 1.5e-135 1 CL0058
Cotton_A_15747_CDS 103 187 98 188 PF02212.18 GED Family 8 91 92 36.2 5.1e-09 1 No_clan
Cotton_A_08204_CDS 17 48 17 48 PF00467.29 KOW Family 1 32 32 32.0 7.7e-08 1 CL0107
Cotton_A_08204_CDS 51 107 49 115 PF17136.4 ribosomal_L24 Family 3 60 65 62.2 4.4e-17 1 No_clan
Cotton_A_19220_CDS 16 38 14 41 PF05678.14 VQ Motif 3 25 28 39.0 3.9e-10 1 No_clan
Cotton_A_00982_CDS 12 104 5 106 PF00421.19 PSII Family 389 494 507 84.5 6.6e-24 1 No_clan
Cotton_A_17889_CDS 31 102 31 103 PF04564.15 U-box Domain 1 72 73 75.4 2.9e-21 1 CL0229
Cotton_A_23024_CDS 37 118 12 120 PF02519.14 Auxin_inducible Family 14 88 90 87.5 5e-25 1 No_clan
Cotton_A_22252_CDS 44 124 44 140 PF01627.23 Hpt Family 1 80 85 37.9 1.6e-09 1 No_clan
Cotton_A_14391_CDS 5 253 5 260 PF01370.21 Epimerase Family 1 229 241 69.7 2.6e-19 1 CL0063
Cotton_A_11753_CDS 317 478 315 478 PF12783.7 Sec7_N Domain 3 158 158 121.2 3.5e-35 1 No_clan
Cotton_A_11753_CDS 564 747 563 747 PF01369.20 Sec7 Domain 2 183 183 235.9 2.5e-70 1 No_clan
Cotton_A_28538_CDS 15 67 3 74 PF10200.9 Ndufs5 Family 31 86 96 22.5 0.0001 1 CL0351
Cotton_A_28538_CDS 91 166 90 166 PF04969.16 CS Domain 2 76 76 40.5 4.3e-10 1 CL0190
Cotton_A_41016_CDS 85 146 85 146 PF00226.31 DnaJ Domain 1 63 63 91.7 2.3e-26 1 CL0392
Cotton_A_41016_CDS 205 423 205 423 PF01556.18 DnaJ_C Domain 1 148 148 113.5 8.4e-33 1 No_clan
Cotton_A_41016_CDS 232 296 232 296 PF00684.19 DnaJ_CXXCXGXG Domain 1 67 67 46.0 5.1e-12 1 No_clan
Cotton_A_17824_CDS 43 68 42 68 PF00642.24 zf-CCCH Family 2 27 27 37.2 1.9e-09 1 CL0537
Cotton_A_17824_CDS 90 114 89 114 PF00642.24 zf-CCCH Family 3 27 27 39.1 4.6e-10 1 CL0537
Cotton_A_17824_CDS 135 159 134 160 PF00642.24 zf-CCCH Family 2 26 27 32.9 4.3e-08 1 CL0537
Cotton_A_17824_CDS 296 321 295 321 PF00642.24 zf-CCCH Family 2 27 27 38.3 8.7e-10 1 CL0537
Cotton_A_17824_CDS 344 367 341 367 PF00642.24 zf-CCCH Family 4 27 27 24.7 1.6e-05 1 CL0537
Cotton_A_40123_CDS 10 139 7 141 PF10914.8 DUF2781 Family 7 144 147 75.3 6.4e-21 1 No_clan
Cotton_A_10113_CDS 175 202 165 203 PF00400.32 WD40 Repeat 9 37 38 16.6 0.011 1 CL0186
Cotton_A_10113_CDS 252 288 250 289 PF00400.32 WD40 Repeat 3 37 38 21.1 0.00041 1 CL0186
Cotton_A_10113_CDS 344 381 340 381 PF00400.32 WD40 Repeat 5 37 38 17.1 0.0073 1 CL0186
Cotton_A_34125_CDS 91 189 91 191 PF06472.15 ABC_membrane_2 Family 1 99 269 59.4 3.6e-16 1 CL0241
Cotton_A_05433_CDS 409 672 405 674 PF00069.25 Pkinase Domain 5 259 264 138.1 3.4e-40 1 CL0016
Cotton_A_16618_CDS 131 265 130 265 PF04116.13 FA_hydroxylase Family 2 133 133 107.3 6.9e-31 1 No_clan
Cotton_A_22518_CDS 1 95 1 95 PF03242.13 LEA_3 Family 1 93 93 98.2 3.3e-28 1 No_clan
Cotton_A_30241_CDS 313 390 310 391 PF00789.20 UBX Domain 4 80 81 58.1 7.4e-16 1 CL0072
Cotton_A_00067_CDS 112 135 110 136 PF00642.24 zf-CCCH Family 3 26 27 32.6 5.4e-08 1 CL0537
Cotton_A_17497_CDS 63 299 61 302 PF00141.23 peroxidase Domain 3 225 229 228.8 6.8e-68 1 CL0617
Cotton_A_29754_CDS 61 105 57 105 PF00010.26 HLH Domain 6 53 53 48.9 4.5e-13 1 No_clan
Cotton_A_30794_CDS 163 425 163 425 PF00069.25 Pkinase Domain 1 264 264 240.0 2.7e-71 1 CL0016
Cotton_A_20764_CDS 167 239 167 241 PF00076.22 RRM_1 Domain 1 66 70 25.5 8.7e-06 1 CL0221
Cotton_A_02196_CDS 132 235 132 235 PF03168.13 LEA_2 Domain 1 101 101 48.9 7.3e-13 1 CL0159
Cotton_A_32398_CDS 37 212 37 212 PF00350.23 Dynamin_N Domain 1 168 168 177.1 3e-52 1 CL0023
Cotton_A_32398_CDS 221 487 221 495 PF01031.20 Dynamin_M Family 1 270 285 206.0 6.8e-61 1 No_clan
Cotton_A_32398_CDS 513 605 512 605 PF02212.18 GED Family 2 92 92 75.2 3.4e-21 1 No_clan
Cotton_A_09615_CDS 74 177 74 177 PF03168.13 LEA_2 Domain 1 101 101 35.4 1.2e-08 1 CL0159
Cotton_A_21131_CDS 1 104 1 104 PF03660.14 PHF5 Family 1 104 104 169.0 2.4e-50 1 No_clan
Cotton_A_25473_CDS 13 99 6 134 PF03371.15 PRP38 Family 11 98 174 104.6 5e-30 1 No_clan
Cotton_A_25473_CDS 118 153 114 158 PF01015.18 Ribosomal_S3Ae Family 6 41 202 40.8 1.8e-10 1 No_clan
Cotton_A_09100_CDS 15 136 15 141 PF04857.20 CAF1 Family 1 125 319 45.0 7.8e-12 1 CL0219
Cotton_A_09100_CDS 159 243 138 243 PF04857.20 CAF1 Family 210 319 319 27.8 1.4e-06 1 CL0219
Cotton_A_15942_CDS 138 308 132 308 PF04720.12 PDDEXK_6 Family 50 221 221 198.9 1e-58 1 No_clan
Cotton_A_21894_CDS 28 263 27 265 PF00262.18 Calreticulin Family 1 253 367 202.4 9.1e-60 1 CL0004
Cotton_A_21894_CDS 265 338 263 338 PF00262.18 Calreticulin Family 293 367 367 78.2 5.3e-22 1 CL0004
Cotton_A_23997_CDS 37 145 37 146 PF14226.6 DIOX_N Family 1 117 118 70.8 1.6e-19 1 CL0029
Cotton_A_23997_CDS 192 286 189 288 PF03171.20 2OG-FeII_Oxy Domain 4 99 101 86.0 2e-24 1 CL0029
Cotton_A_12781_CDS 36 140 34 140 PF13947.6 GUB_WAK_bind Domain 3 106 106 99.6 1.5e-28 1 No_clan
Cotton_A_12781_CDS 295 334 295 337 PF07645.15 EGF_CA Domain 1 39 42 30.1 4e-07 1 CL0001
Cotton_A_12781_CDS 422 688 422 693 PF00069.25 Pkinase Domain 1 258 264 168.2 2.3e-49 1 CL0016
Cotton_A_10186_CDS 1 161 1 161 PF14009.6 DUF4228 Family 1 179 179 80.0 2.8e-22 1 No_clan
Cotton_A_19461_CDS 6 110 6 111 PF18117.1 EDS1_EP Domain 1 106 107 119.9 6e-35 1 No_clan
Cotton_A_11329_CDS 240 259 239 261 PF00642.24 zf-CCCH Family 5 25 27 22.1 0.0001 1 CL0537
Cotton_A_10119_CDS 164 396 161 397 PF00931.22 NB-ARC Domain 4 251 252 160.5 4.1e-47 1 CL0023
Cotton_A_08558_CDS 75 123 71 124 PF04570.14 zf-FLZ Domain 5 53 54 66.8 8.6e-19 1 CL0175
Cotton_A_32878_CDS 53 87 53 88 PF07897.11 EAR Family 1 35 36 61.9 3.1e-17 1 No_clan
Cotton_A_32878_CDS 111 157 111 166 PF16136.5 NINJA_B Family 1 50 111 70.0 2e-19 1 No_clan
Cotton_A_14256_CDS 87 140 86 148 PF00170.21 bZIP_1 Family 3 56 64 47.9 1.1e-12 1 CL0018
Cotton_A_35194_CDS 59 153 58 154 PF02298.17 Cu_bind_like Domain 1 83 84 25.0 1.4e-05 1 CL0026
Cotton_A_13246_CDS 88 221 88 222 PF00334.19 NDK Domain 1 134 135 179.9 2.2e-53 1 No_clan
Cotton_A_35826_CDS 104 281 104 282 PF02194.15 PXA Family 1 181 182 119.8 1.2e-34 1 No_clan
Cotton_A_35826_CDS 676 777 669 778 PF00787.24 PX Domain 9 112 113 56.6 2.2e-15 1 No_clan
Cotton_A_35826_CDS 944 1084 944 1085 PF08628.12 Nexin_C Family 1 111 112 104.8 3.7e-30 1 No_clan
Cotton_A_18411_CDS 581 682 577 687 PF05904.11 DUF863 Family 748 858 938 75.5 3.5e-21 1 No_clan
Cotton_A_09176_CDS 103 146 102 146 PF13639.6 zf-RING_2 Domain 2 44 44 51.3 1.1e-13 1 CL0229
Cotton_A_34135_CDS 10 74 9 76 PF03893.16 Lipase3_N Domain 2 74 76 70.9 6.5e-20 1 CL0028
Cotton_A_34135_CDS 109 244 109 247 PF01764.25 Lipase_3 Family 1 139 142 74.6 6.9e-21 1 CL0028
Cotton_A_23140_CDS 15 274 15 274 PF00069.25 Pkinase Domain 1 264 264 199.1 8.3e-59 1 CL0016
Cotton_A_28557_CDS 70 118 70 121 PF13041.6 PPR_2 Repeat 1 47 50 33.5 3.6e-08 1 CL0020
Cotton_A_28557_CDS 148 174 148 175 PF01535.20 PPR Family 4 30 31 18.2 0.002 1 CL0020
Cotton_A_28557_CDS 176 203 176 205 PF01535.20 PPR Family 1 28 31 20.3 0.00044 1 CL0020
Cotton_A_28557_CDS 249 269 249 274 PF01535.20 PPR Family 4 24 31 11.1 0.37 1 CL0020
Cotton_A_28557_CDS 274 321 274 323 PF13041.6 PPR_2 Repeat 1 48 50 34.6 1.6e-08 1 CL0020
Cotton_A_28557_CDS 375 422 375 424 PF13041.6 PPR_2 Repeat 1 48 50 37.3 2.2e-09 1 CL0020
Cotton_A_28557_CDS 477 524 476 525 PF13041.6 PPR_2 Repeat 2 49 50 50.2 2.2e-13 1 CL0020
Cotton_A_28557_CDS 552 573 550 574 PF01535.20 PPR Family 3 24 31 11.2 0.34 1 CL0020
Cotton_A_37221_CDS 2 76 1 76 PF07123.12 PsbW Family 60 132 132 131.9 1.4e-38 1 No_clan
Cotton_A_37051_CDS 38 388 38 389 PF01566.18 Nramp Family 1 357 358 271.5 1e-80 1 CL0062
Cotton_A_05980_CDS 217 262 217 262 PF10533.9 Plant_zn_clust Domain 1 49 49 65.0 4.4e-18 1 No_clan
Cotton_A_05980_CDS 266 323 265 323 PF03106.15 WRKY Domain 2 59 59 90.2 7e-26 1 CL0274
Cotton_A_21622_CDS 2 107 1 112 PF04133.14 Vps55 Family 8 112 117 106.1 1e-30 1 No_clan
Cotton_A_21754_CDS 11 387 11 387 PF07690.16 MFS_1 Family 1 353 353 96.4 1.5e-27 1 CL0015
Cotton_A_02645_CDS 80 353 78 355 PF07714.17 Pkinase_Tyr Domain 3 257 259 157.2 4.5e-46 1 CL0016
Cotton_A_12367_CDS 23 81 23 81 PF06972.11 DUF1296 Family 1 60 60 115.1 1.1e-33 1 CL0214
Cotton_A_16222_CDS 119 403 119 403 PF00069.25 Pkinase Domain 1 264 264 236.4 3.5e-70 1 CL0016
Cotton_A_27866_CDS 81 110 80 110 PF17123.5 zf-RING_11 Domain 2 29 29 40.8 1.3e-10 1 CL0229
Cotton_A_27866_CDS 264 370 264 370 PF13519.6 VWA_2 Domain 1 107 107 62.3 5.9e-17 1 CL0128
Cotton_A_21787_CDS 168 337 167 349 PF04802.15 SMK-1 Family 2 172 191 195.6 6.9e-58 1 No_clan
Cotton_A_28454_CDS 60 145 60 145 PF03330.18 DPBB_1 Domain 1 83 83 80.7 7.3e-23 1 CL0199
Cotton_A_28454_CDS 156 233 156 233 PF01357.21 Pollen_allerg_1 Domain 1 80 80 104.5 2.2e-30 1 CL0159
Cotton_A_22769_CDS 84 549 83 550 PF00982.21 Glyco_transf_20 Family 2 473 474 623.3 2.4e-187 1 CL0113
Cotton_A_22769_CDS 593 799 591 812 PF02358.16 Trehalose_PPase Family 3 204 233 187.0 2.9e-55 1 CL0137
Cotton_A_33732_CDS 59 297 58 297 PF00121.18 TIM Domain 2 243 243 302.5 2e-90 1 CL0036
Cotton_A_01373_CDS 26 81 26 82 PF11961.8 DUF3475 Family 1 56 57 77.4 6.3e-22 1 No_clan
Cotton_A_01373_CDS 237 325 237 325 PF05003.12 DUF668 Family 1 89 89 101.1 3.4e-29 1 No_clan
Cotton_A_01962_CDS 43 152 42 152 PF00565.17 SNase Domain 2 108 108 39.2 7.6e-10 1 CL0049
Cotton_A_01962_CDS 273 366 254 367 PF00565.17 SNase Domain 18 107 108 50.4 2.6e-13 1 CL0049
Cotton_A_01962_CDS 617 715 615 715 PF00565.17 SNase Domain 3 108 108 52.4 6.2e-14 1 CL0049
Cotton_A_01962_CDS 734 857 731 858 PF00567.24 TUDOR Domain 4 121 122 70.0 1.7e-19 1 CL0049
Cotton_A_01962_CDS 865 969 855 970 PF00565.17 SNase Domain 19 107 108 32.5 9.6e-08 1 CL0049
Cotton_A_15322_CDS 103 151 101 151 PF00249.31 Myb_DNA-binding Domain 3 46 46 33.8 2.9e-08 1 CL0123
Cotton_A_37085_CDS 45 109 45 110 PF16209.5 PhoLip_ATPase_N Family 1 66 67 83.4 6.3e-24 1 No_clan
Cotton_A_37085_CDS 546 638 532 640 PF13246.6 Cation_ATPase Family 13 87 91 40.3 2.5e-10 1 CL0137
Cotton_A_37085_CDS 974 1060 974 1063 PF16212.5 PhoLip_ATPase_C Family 1 87 249 147.1 7.5e-43 1 No_clan
Cotton_A_25919_CDS 74 327 72 327 PF00069.25 Pkinase Domain 3 264 264 227.6 1.6e-67 1 CL0016
Cotton_A_02149_CDS 49 235 49 236 PF00485.18 PRK Domain 1 196 197 148.6 1.8e-43 1 CL0023
Cotton_A_02149_CDS 265 467 262 467 PF14681.6 UPRTase Domain 3 207 207 249.8 1.6e-74 1 CL0533
Cotton_A_02792_CDS 90 187 90 188 PF03091.15 CutA1 Domain 1 98 99 126.8 2.4e-37 1 CL0089
Cotton_A_16656_CDS 181 447 178 450 PF00069.25 Pkinase Domain 4 260 264 164.3 3.5e-48 1 CL0016
Cotton_A_08832_CDS 75 117 74 117 PF13639.6 zf-RING_2 Domain 2 44 44 46.0 4.9e-12 1 CL0229
Cotton_A_39003_CDS 88 226 87 226 PF04116.13 FA_hydroxylase Family 2 133 133 57.4 1.9e-15 1 No_clan
Cotton_A_28177_CDS 8 153 4 170 PF12767.7 SAGA-Tad1 Family 5 124 235 126.0 1.8e-36 1 No_clan
Cotton_A_33937_CDS 30 105 29 106 PF14569.6 zf-UDP Domain 2 77 78 135.6 4.6e-40 1 CL0229
Cotton_A_33937_CDS 364 1078 364 1083 PF03552.14 Cellulose_synt Family 1 714 722 1341.3 0 1 CL0110
Cotton_A_00509_CDS 30 376 28 380 PF00224.21 PK Family 4 344 348 303.2 2e-90 1 CL0151
Cotton_A_00509_CDS 395 519 395 523 PF02887.16 PK_C Domain 1 113 117 83.1 1.7e-23 1 No_clan
Cotton_A_35640_CDS 138 352 138 354 PF07002.16 Copine Family 1 216 218 253.3 1.6e-75 1 CL0128
Cotton_A_35640_CDS 429 470 428 471 PF13920.6 zf-C3HC4_3 Domain 2 49 50 43.7 1.8e-11 1 CL0229
Cotton_A_02589_CDS 134 161 132 162 PF01535.20 PPR Family 3 30 31 10.7 0.53 1 CL0020
Cotton_A_02589_CDS 168 195 167 196 PF01535.20 PPR Family 2 29 31 17.2 0.0042 1 CL0020
Cotton_A_22619_CDS 138 418 81 429 PF00295.17 Glyco_hydro_28 Domain 51 320 325 134.0 6.1e-39 1 CL0268
Cotton_A_01633_CDS 78 206 64 214 PF03358.15 FMN_red Domain 17 145 155 47.1 2e-12 1 CL0042
Cotton_A_32893_CDS 68 362 68 362 PF00206.20 Lyase_1 Domain 1 312 312 246.9 3.2e-73 1 No_clan
Cotton_A_32893_CDS 425 496 425 497 PF14698.6 ASL_C2 Domain 1 68 69 68.9 4.9e-19 1 No_clan
Cotton_A_13465_CDS 42 207 42 207 PF09758.9 FPL Family 1 148 148 123.1 9.2e-36 1 No_clan
Cotton_A_27351_CDS 29 68 28 68 PF08263.12 LRRNT_2 Family 2 41 41 41.9 8.8e-11 1 No_clan
Cotton_A_27351_CDS 144 163 144 165 PF00560.33 LRR_1 Repeat 1 20 23 10.6 0.72 1 CL0022
Cotton_A_27351_CDS 292 563 291 565 PF00069.25 Pkinase Domain 2 260 264 154.3 3.7e-45 1 CL0016
Cotton_A_03406_CDS 1 145 1 145 PF00582.26 Usp Domain 6 141 141 106.3 1.8e-30 1 CL0039
Cotton_A_23275_CDS 8 55 2 56 PF00752.17 XPG_N Family 53 100 101 43.9 2.6e-11 1 CL0280
Cotton_A_23275_CDS 93 189 93 189 PF00867.18 XPG_I Family 1 94 94 98.4 2.3e-28 1 CL0464
Cotton_A_32430_CDS 38 76 38 81 PF04749.17 PLAC8 Family 1 40 99 36.1 1e-08 1 No_clan
Cotton_A_20816_CDS 97 202 97 202 PF03168.13 LEA_2 Domain 1 101 101 39.3 7.1e-10 1 CL0159
Cotton_A_08258_CDS 244 457 243 478 PF00069.25 Pkinase Domain 2 204 264 144.8 3e-42 1 CL0016
Cotton_A_15823_CDS 27 167 15 179 PF00201.18 UDPGT Family 266 412 499 81.4 6e-23 1 CL0113
Cotton_A_06350_CDS 28 278 28 278 PF02089.15 Palm_thioest Domain 1 242 242 230.7 2.2e-68 1 CL0028
Cotton_A_18002_CDS 13 75 13 75 PF00462.24 Glutaredoxin Domain 1 60 60 55.5 4.9e-15 1 CL0172
Cotton_A_21991_CDS 31 82 23 84 PF00403.26 HMA Domain 9 59 62 32.7 7.6e-08 1 No_clan
Cotton_A_12338_CDS 92 262 87 264 PF02779.24 Transket_pyr Domain 7 176 178 160.3 3.7e-47 1 CL0254
Cotton_A_12338_CDS 278 399 277 399 PF02780.20 Transketolase_C Domain 2 124 124 122.6 8.3e-36 1 CL0591
Cotton_A_33078_CDS 204 364 204 366 PF01764.25 Lipase_3 Family 1 140 142 141.4 1.7e-41 1 CL0028
Cotton_A_03132_CDS 32 136 32 136 PF06426.14 SATase_N Domain 1 105 105 123.8 3.5e-36 1 No_clan
Cotton_A_03132_CDS 171 207 166 207 PF00132.24 Hexapep Repeat 2 36 36 17.1 0.0032 1 CL0536
Cotton_A_03132_CDS 216 249 216 250 PF00132.24 Hexapep Repeat 1 34 36 45.2 4.5e-12 1 CL0536
Cotton_A_02722_CDS 56 131 42 131 PF13365.6 Trypsin_2 Domain 72 150 150 44.5 2.8e-11 1 CL0124
Cotton_A_02722_CDS 215 277 193 277 PF17815.1 PDZ_3 Domain 83 145 145 59.6 3e-16 1 CL0466
Cotton_A_25434_CDS 199 287 199 316 PF02338.19 OTU Family 1 94 127 50.3 3.1e-13 1 CL0125
Cotton_A_12510_CDS 44 448 42 454 PF01490.18 Aa_trans Family 3 403 409 201.2 2.2e-59 1 CL0062
Cotton_A_21182_CDS 50 473 50 481 PF13520.6 AA_permease_2 Family 1 418 425 160.9 4.3e-47 1 CL0062
Cotton_A_21182_CDS 499 548 499 549 PF13906.6 AA_permease_C Domain 1 50 51 63.1 1.8e-17 1 CL0062
Cotton_A_05062_CDS 7 163 7 173 PF00875.18 DNA_photolyase Domain 1 157 164 137.8 3.3e-40 1 CL0039
Cotton_A_05062_CDS 283 481 283 483 PF03441.14 FAD_binding_7 Domain 1 200 202 213.2 2.5e-63 1 No_clan
Cotton_A_05062_CDS 510 625 510 627 PF12546.8 Cryptochrome_C Family 1 120 121 123.5 6.8e-36 1 No_clan
Cotton_A_06488_CDS 35 74 34 74 PF08263.12 LRRNT_2 Family 2 41 41 45.8 5.3e-12 1 No_clan
Cotton_A_06488_CDS 609 664 608 664 PF13855.6 LRR_8 Repeat 5 61 61 27.0 2.7e-06 1 CL0022
Cotton_A_06488_CDS 770 1040 767 1042 PF00069.25 Pkinase Domain 4 260 264 130.7 6.1e-38 1 CL0016
Cotton_A_32414_CDS 27 164 23 165 PF00892.20 EamA Family 7 136 137 53.0 3.9e-14 1 CL0184
Cotton_A_32414_CDS 198 336 197 337 PF00892.20 EamA Family 2 136 137 63.1 2.9e-17 1 CL0184
Cotton_A_11874_CDS 21 465 21 467 PF00759.19 Glyco_hydro_9 Domain 1 409 411 448.0 4.3e-134 1 CL0059
Cotton_A_05903_CDS 20 93 19 93 PF05899.12 Cupin_3 Domain 2 74 74 99.9 4.7e-29 1 CL0029
Cotton_A_04916_CDS 71 159 71 168 PF01190.17 Pollen_Ole_e_I Family 1 88 99 43.2 4e-11 1 CL0287
Cotton_A_39060_CDS 198 257 168 258 PF12894.7 ANAPC4_WD40 Repeat 30 91 92 26.0 8.5e-06 1 CL0186
Cotton_A_39060_CDS 282 316 279 316 PF00400.32 WD40 Repeat 5 38 38 29.6 8.7e-07 1 CL0186
Cotton_A_39060_CDS 329 367 326 367 PF00400.32 WD40 Repeat 4 38 38 20.5 0.00061 1 CL0186
Cotton_A_39060_CDS 422 452 415 452 PF00400.32 WD40 Repeat 9 38 38 18.4 0.0029 1 CL0186
Cotton_A_15027_CDS 21 261 17 262 PF13561.6 adh_short_C2 Domain 3 233 234 197.5 2.4e-58 1 CL0063
Cotton_A_05279_CDS 76 258 57 279 PF02450.15 LCAT Family 29 202 392 78.4 5.9e-22 1 CL0028
Cotton_A_06809_CDS 15 98 1 98 PF14368.6 LTP_2 Family 16 97 97 56.5 2.2e-15 1 CL0482
Cotton_A_00328_CDS 1 102 1 102 PF17067.5 RPS31 Family 1 99 99 140.4 1.7e-41 1 No_clan
Cotton_A_25002_CDS 34 71 31 71 PF08263.12 LRRNT_2 Family 4 41 41 42.8 4.7e-11 1 No_clan
Cotton_A_25002_CDS 122 182 122 182 PF13855.6 LRR_8 Repeat 1 61 61 38.2 8.9e-10 1 CL0022
Cotton_A_25002_CDS 307 571 304 573 PF00069.25 Pkinase Domain 4 260 264 152.3 1.5e-44 1 CL0016
Cotton_A_26925_CDS 15 101 10 103 PF09139.11 Tam41_Mmp37 Family 5 95 323 82.4 3.8e-23 1 CL0260
Cotton_A_26925_CDS 102 299 101 299 PF09139.11 Tam41_Mmp37 Family 127 323 323 177.6 4.2e-52 1 CL0260
Cotton_A_21952_CDS 1 36 1 37 PF06364.12 DUF1068 Family 132 167 168 52.5 5.2e-14 1 No_clan
Cotton_A_26211_CDS 71 98 71 101 PF01535.20 PPR Family 1 28 31 11.0 0.4 1 CL0020
Cotton_A_26211_CDS 145 169 145 172 PF01535.20 PPR Family 4 28 31 16.1 0.0094 1 CL0020
Cotton_A_26211_CDS 170 202 170 206 PF13041.6 PPR_2 Repeat 1 33 50 30.7 2.6e-07 1 CL0020
Cotton_A_26211_CDS 232 280 232 281 PF13041.6 PPR_2 Repeat 1 49 50 34.1 2.3e-08 1 CL0020
Cotton_A_10178_CDS 89 116 89 124 PF00786.28 PBD Domain 1 29 59 24.6 2.4e-05 1 No_clan
Cotton_A_10178_CDS 152 286 152 292 PF00620.27 RhoGAP Domain 1 145 152 76.9 1.4e-21 1 CL0409
Cotton_A_30069_CDS 1 52 1 52 PF00281.19 Ribosomal_L5 Domain 3 57 57 67.6 8.7e-19 1 CL0652
Cotton_A_30069_CDS 56 154 56 154 PF00673.21 Ribosomal_L5_C Domain 1 94 94 72.6 2.3e-20 1 No_clan
Cotton_A_23138_CDS 73 197 72 197 PF04859.12 DUF641 Family 2 128 128 149.9 4.5e-44 1 No_clan
Cotton_A_01368_CDS 41 156 34 156 PF06232.11 ATS3 Domain 9 125 125 177.6 8.4e-53 1 CL0321
Cotton_A_12772_CDS 30 133 29 133 PF13947.6 GUB_WAK_bind Domain 2 106 106 91.8 4e-26 1 No_clan
Cotton_A_12772_CDS 288 321 288 328 PF07645.15 EGF_CA Domain 1 35 42 29.0 9.2e-07 1 CL0001
Cotton_A_12772_CDS 483 643 478 646 PF00069.25 Pkinase Domain 108 259 264 94.8 5.4e-27 1 CL0016
Cotton_A_37891_CDS 255 301 255 301 PF14570.6 zf-RING_4 Domain 1 48 48 61.1 6.4e-17 1 CL0229
Cotton_A_36017_CDS 230 286 230 286 PF06886.11 TPX2 Family 1 57 57 70.6 9.5e-20 1 No_clan
Cotton_A_38827_CDS 1 211 1 211 PF00063.21 Myosin_head Domain 449 677 677 198.4 1.7e-58 1 CL0023
Cotton_A_38827_CDS 237 255 236 256 PF00612.27 IQ Motif 2 20 21 14.8 0.017 1 CL0220
Cotton_A_38827_CDS 285 303 284 304 PF00612.27 IQ Motif 2 20 21 13.6 0.044 1 CL0220
Cotton_A_01324_CDS 72 210 72 212 PF01565.23 FAD_binding_4 Domain 1 136 139 98.6 2.5e-28 1 CL0077
Cotton_A_01324_CDS 471 530 471 530 PF08031.12 BBE Domain 1 46 46 75.1 3.4e-21 1 CL0277
Cotton_A_16999_CDS 35 148 34 150 PF07732.15 Cu-oxidase_3 Domain 2 117 119 130.1 3.9e-38 1 CL0026
Cotton_A_16999_CDS 161 202 160 210 PF00394.22 Cu-oxidase Domain 2 48 159 26.9 4.5e-06 1 CL0026
Cotton_A_12061_CDS 6 181 6 181 PF14215.6 bHLH-MYC_N Family 1 175 175 106.6 1.7e-30 1 CL0161
Cotton_A_20618_CDS 157 294 156 294 PF13365.6 Trypsin_2 Domain 2 150 150 71.5 1.4e-19 1 CL0124
Cotton_A_20618_CDS 350 435 333 435 PF13180.6 PDZ_2 Domain 6 82 82 33.0 5.6e-08 1 CL0466
Cotton_A_20618_CDS 442 587 442 587 PF17815.1 PDZ_3 Domain 1 145 145 161.7 1e-47 1 CL0466
Cotton_A_02906_CDS 13 81 13 82 PF00076.22 RRM_1 Domain 1 69 70 41.7 7.5e-11 1 CL0221
Cotton_A_37670_CDS 2 259 1 260 PF00501.28 AMP-binding Family 163 422 423 206.4 5.6e-61 1 CL0378
Cotton_A_37670_CDS 268 347 268 347 PF13193.6 AMP-binding_C Domain 1 76 76 83.9 1.2e-23 1 CL0531
Cotton_A_32017_CDS 225 273 187 273 PF03765.15 CRAL_TRIO_N Domain 18 54 54 29.8 5.2e-07 1 CL0214
Cotton_A_32017_CDS 298 452 296 453 PF00650.20 CRAL_TRIO Domain 3 158 159 89.2 2.2e-25 1 CL0512
Cotton_A_04539_CDS 94 528 94 529 PF00854.21 PTR2 Family 1 394 395 265.1 9e-79 1 CL0015
Cotton_A_27993_CDS 28 84 28 84 PF11961.8 DUF3475 Family 1 57 57 91.5 2.5e-26 1 No_clan
Cotton_A_27993_CDS 432 523 432 523 PF05003.12 DUF668 Family 1 89 89 112.2 1.2e-32 1 No_clan
Cotton_A_15354_CDS 3 61 2 61 PF03868.15 Ribosomal_L6e_N Domain 2 60 60 59.7 2.4e-16 1 No_clan
Cotton_A_15354_CDS 126 238 126 238 PF01159.19 Ribosomal_L6e Family 1 111 111 131.9 1.4e-38 1 No_clan
Cotton_A_06373_CDS 63 372 63 372 PF00389.30 2-Hacid_dh Domain 1 134 134 116.0 8.9e-34 1 CL0325
Cotton_A_06373_CDS 165 340 165 340 PF02826.19 2-Hacid_dh_C Domain 1 178 178 205.1 5.2e-61 1 CL0063
Cotton_A_06373_CDS 528 589 527 591 PF01842.25 ACT Domain 2 65 67 28.8 7.8e-07 1 CL0070
Cotton_A_02461_CDS 4 76 3 77 PF02798.20 GST_N Domain 2 75 76 67.5 9.6e-19 1 CL0172
Cotton_A_02461_CDS 116 192 75 194 PF00043.25 GST_C Domain 19 90 93 24.6 2.2e-05 1 CL0497
Cotton_A_13734_CDS 281 493 278 494 PF07228.12 SpoIIE Family 5 192 193 32.8 6e-08 1 CL0238
Cotton_A_18860_CDS 56 106 56 107 PF00847.20 AP2 Domain 1 53 54 46.1 4.2e-12 1 CL0081
Cotton_A_33341_CDS 49 171 49 236 PF03634.13 TCP Family 1 123 156 136.3 1.3e-39 1 No_clan
Cotton_A_33536_CDS 565 602 565 611 PF02213.16 GYF Domain 2 39 45 43.9 1.3e-11 1 CL0673
Cotton_A_28758_CDS 16 58 16 59 PF06203.14 CCT Motif 1 43 44 68.3 4.1e-19 1 CL0281
Cotton_A_08745_CDS 10 214 3 216 PF16910.5 VPS13_mid_rpt Repeat 27 231 235 106.4 1.4e-30 1 No_clan
Cotton_A_08745_CDS 1422 1576 1404 1580 PF06101.11 Vps62 Family 35 186 542 36.2 2.2e-09 1 No_clan
Cotton_A_08745_CDS 1660 1801 1653 1838 PF06101.11 Vps62 Family 37 187 542 34.5 7.2e-09 1 No_clan
Cotton_A_08745_CDS 2680 2942 2678 2955 PF06650.12 SHR-BD Family 3 213 271 34.6 1.3e-08 1 No_clan
Cotton_A_24889_CDS 74 403 74 403 PF00657.22 Lipase_GDSL Family 1 200 200 32.7 7.1e-08 1 CL0264
Cotton_A_17917_CDS 122 157 118 157 PF00400.32 WD40 Repeat 5 38 38 15.6 0.023 1 CL0186
Cotton_A_17917_CDS 171 203 161 203 PF00400.32 WD40 Repeat 8 38 38 26.1 1.1e-05 1 CL0186
Cotton_A_17917_CDS 487 788 454 788 PF01501.20 Glyco_transf_8 Family 10 256 256 283.0 2.2e-84 1 CL0110
Cotton_A_02373_CDS 105 119 103 120 PF07145.15 PAM2 Motif 3 17 18 21.4 0.00013 1 No_clan
Cotton_A_02373_CDS 179 243 179 246 PF00076.22 RRM_1 Domain 1 67 70 42.4 4.6e-11 1 CL0221
Cotton_A_02373_CDS 276 343 276 344 PF00076.22 RRM_1 Domain 1 69 70 33.0 3.8e-08 1 CL0221
Cotton_A_11340_CDS 315 349 306 349 PF00400.32 WD40 Repeat 3 38 38 18.3 0.0032 1 CL0186
Cotton_A_11340_CDS 356 391 353 391 PF00400.32 WD40 Repeat 4 38 38 22.7 0.00013 1 CL0186
Cotton_A_11340_CDS 479 514 478 515 PF00400.32 WD40 Repeat 2 37 38 19.6 0.0012 1 CL0186
Cotton_A_21641_CDS 17 79 16 80 PF01246.20 Ribosomal_L24e Domain 3 65 66 96.0 1.1e-27 1 CL0175
Cotton_A_19005_CDS 10 100 9 105 PF12796.7 Ank_2 Repeat 2 78 83 32.2 1.2e-07 1 CL0465
Cotton_A_20408_CDS 57 237 57 238 PF00350.23 Dynamin_N Domain 1 167 168 113.1 1.3e-32 1 CL0023
Cotton_A_08659_CDS 177 216 170 217 PF00010.26 HLH Domain 10 52 53 29.0 7.8e-07 1 No_clan
Cotton_A_15637_CDS 7 310 7 310 PF00656.22 Peptidase_C14 Domain 1 248 248 204.7 2.2e-60 1 CL0093
Cotton_A_02673_CDS 87 194 86 203 PF13962.6 PGG Domain 2 96 116 52.0 5.4e-14 1 No_clan
Cotton_A_23198_CDS 12 214 11 259 PF01073.19 3Beta_HSD Family 2 190 280 77.8 6.8e-22 1 CL0063
Cotton_A_07217_CDS 59 109 58 110 PF01907.19 Ribosomal_L37e Family 2 53 54 90.3 6.3e-26 1 CL0167
Cotton_A_24280_CDS 57 107 56 107 PF00249.31 Myb_DNA-binding Domain 2 46 46 33.0 5e-08 1 CL0123
Cotton_A_38115_CDS 126 414 122 414 PF00291.25 PALP Family 5 294 294 277.1 1.8e-82 1 CL0063
Cotton_A_38115_CDS 427 516 427 516 PF00585.18 Thr_dehydrat_C Domain 1 91 91 73.5 8.7e-21 1 CL0070
Cotton_A_38115_CDS 522 607 520 609 PF00585.18 Thr_dehydrat_C Domain 3 89 91 84.5 3.2e-24 1 CL0070
Cotton_A_37327_CDS 12 90 12 90 PF00347.23 Ribosomal_L6 Domain 1 76 76 41.4 1.7e-10 1 No_clan
Cotton_A_37327_CDS 143 197 141 197 PF00347.23 Ribosomal_L6 Domain 24 76 76 30.3 5e-07 1 No_clan
Cotton_A_32230_CDS 15 98 15 102 PF02214.22 BTB_2 Domain 1 89 94 47.4 1.9e-12 1 CL0033
Cotton_A_37999_CDS 92 170 6 171 PF00348.17 polyprenyl_synt Domain 172 255 256 67.3 1.1e-18 1 CL0613
Cotton_A_22521_CDS 21 71 3 72 PF12146.8 Hydrolase_4 Family 189 238 239 48.6 6.1e-13 1 CL0028
Cotton_A_24270_CDS 188 432 186 433 PF00337.22 Gal-bind_lectin Domain 3 133 134 164.7 7.3e-49 1 CL0004
Cotton_A_24270_CDS 480 660 479 666 PF01762.21 Galactosyl_T Family 2 187 195 107.6 7.1e-31 1 CL0110
Cotton_A_17750_CDS 129 178 128 179 PF00847.20 AP2 Domain 2 53 54 47.3 1.8e-12 1 CL0081
Cotton_A_06806_CDS 7 145 6 145 PF01398.21 JAB Family 2 118 118 93.2 1.1e-26 1 CL0366
Cotton_A_06806_CDS 193 306 193 306 PF13012.6 MitMem_reg Family 1 112 112 88.0 5.5e-25 1 No_clan
Cotton_A_08680_CDS 238 283 238 283 PF10533.9 Plant_zn_clust Domain 1 49 49 62.3 3e-17 1 No_clan
Cotton_A_08680_CDS 287 343 286 344 PF03106.15 WRKY Domain 2 58 59 91.2 3.4e-26 1 CL0274
Cotton_A_08540_CDS 7 130 1 130 PF06075.12 DUF936 Family 572 692 692 104.7 6.3e-30 1 No_clan
Cotton_A_25077_CDS 315 439 315 439 PF10155.9 CNOT11 Family 1 125 125 176.5 2.2e-52 1 No_clan
Cotton_A_08889_CDS 40 167 39 167 PF00582.26 Usp Domain 3 141 141 77.3 1.6e-21 1 CL0039
Cotton_A_14197_CDS 111 159 79 160 PF00111.27 Fer2 Domain 33 77 78 40.6 1.8e-10 1 CL0486
Cotton_A_03747_CDS 26 223 7 226 PF03029.17 ATP_bind_1 Domain 42 229 241 203.8 3.5e-60 1 CL0023
Cotton_A_16069_CDS 183 217 182 217 PF05553.11 DUF761 Family 2 36 36 49.6 2e-13 1 No_clan
Cotton_A_02979_CDS 33 70 32 71 PF02736.19 Myosin_N Domain 2 39 40 43.3 2.4e-11 1 CL0010
Cotton_A_02979_CDS 86 780 86 780 PF00063.21 Myosin_head Domain 1 677 677 805.1 4.4e-242 1 CL0023
Cotton_A_02979_CDS 797 815 796 816 PF00612.27 IQ Motif 2 20 21 15.9 0.0078 1 CL0220
Cotton_A_02979_CDS 819 838 819 839 PF00612.27 IQ Motif 1 20 21 20.2 0.00034 1 CL0220
Cotton_A_02979_CDS 845 864 844 864 PF00612.27 IQ Motif 2 21 21 15.4 0.011 1 CL0220
Cotton_A_02979_CDS 892 911 892 912 PF00612.27 IQ Motif 1 20 21 19.0 0.0008 1 CL0220
Cotton_A_02979_CDS 916 935 915 935 PF00612.27 IQ Motif 2 21 21 16.8 0.0039 1 CL0220
Cotton_A_02979_CDS 1344 1447 1343 1448 PF01843.19 DIL Family 2 103 104 79.0 2.6e-22 1 No_clan
Cotton_A_30890_CDS 90 193 90 194 PF03168.13 LEA_2 Domain 1 101 101 51.5 1.1e-13 1 CL0159
Cotton_A_31856_CDS 119 508 118 515 PF02163.22 Peptidase_M50 Family 2 243 250 52.3 4.7e-14 1 CL0126
Cotton_A_01266_CDS 108 222 108 222 PF03556.15 Cullin_binding Family 1 120 120 94.2 7.1e-27 1 CL0220
Cotton_A_20300_CDS 7 108 6 110 PF00466.20 Ribosomal_L10 Family 2 98 100 73.5 1.2e-20 1 No_clan
Cotton_A_20300_CDS 114 183 114 183 PF17777.1 RL10P_insert Domain 1 71 71 71.9 3.1e-20 1 No_clan
Cotton_A_20300_CDS 235 320 234 320 PF00428.19 Ribosomal_60s Family 2 88 88 51.7 9.7e-14 1 No_clan
Cotton_A_19933_CDS 40 423 40 424 PF14968.6 CCDC84 Coiled-coil 1 347 348 380.7 9.3e-114 1 No_clan
Cotton_A_11346_CDS 197 510 197 510 PF04765.13 DUF616 Family 1 314 314 496.2 3.7e-149 1 No_clan
Cotton_A_25628_CDS 14 117 14 117 PF02991.16 Atg8 Domain 1 104 104 173.0 1.4e-51 1 CL0072
Cotton_A_33638_CDS 128 172 126 175 PF13041.6 PPR_2 Repeat 3 47 50 36.4 4.3e-09 1 CL0020
Cotton_A_33638_CDS 227 275 227 276 PF13041.6 PPR_2 Repeat 1 49 50 47.4 1.6e-12 1 CL0020
Cotton_A_33638_CDS 303 322 302 324 PF01535.20 PPR Family 3 22 31 11.9 0.21 1 CL0020
Cotton_A_41221_CDS 148 294 136 337 PF00201.18 UDPGT Family 261 381 499 81.3 6.3e-23 1 CL0113
Cotton_A_31267_CDS 3 152 2 153 PF00160.21 Pro_isomerase Domain 2 157 158 172.8 6.2e-51 1 CL0475
Cotton_A_34818_CDS 149 384 145 385 PF00931.22 NB-ARC Domain 5 251 252 179.4 6.8e-53 1 CL0023
Cotton_A_34818_CDS 526 582 524 582 PF13855.6 LRR_8 Repeat 3 60 61 42.1 5.3e-11 1 CL0022
Cotton_A_34731_CDS 14 65 12 66 PF00584.20 SecE Family 3 54 55 26.7 3.9e-06 1 No_clan
Cotton_A_35853_CDS 5 177 5 177 PF00025.21 Arf Domain 1 175 175 266.5 7.3e-80 1 CL0023
Cotton_A_35483_CDS 2 418 1 433 PF00067.22 p450 Domain 42 450 463 222.1 1.2e-65 1 No_clan
Cotton_A_00908_CDS 36 121 35 122 PF00067.22 p450 Domain 1 90 463 46.0 3e-12 1 No_clan
Cotton_A_00908_CDS 110 317 106 317 PF00067.22 p450 Domain 105 310 463 86.2 2e-24 1 No_clan
Cotton_A_24527_CDS 84 130 83 130 PF03107.16 C1_2 Domain 2 47 47 35.8 7.1e-09 1 CL0006
Cotton_A_24527_CDS 139 187 139 187 PF03107.16 C1_2 Domain 1 47 47 35.8 7.3e-09 1 CL0006
Cotton_A_24527_CDS 196 242 196 242 PF03107.16 C1_2 Domain 1 47 47 37.2 2.6e-09 1 CL0006
Cotton_A_24527_CDS 252 300 250 300 PF03107.16 C1_2 Domain 3 47 47 28.4 1.5e-06 1 CL0006
Cotton_A_24170_CDS 19 90 18 94 PF04667.17 Endosulfine Family 2 77 80 79.7 1.3e-22 1 No_clan
Cotton_A_31413_CDS 4 98 1 98 PF14368.6 LTP_2 Family 5 97 97 52.7 3.3e-14 1 CL0482
Cotton_A_04256_CDS 57 117 57 119 PF03641.14 Lysine_decarbox Family 1 61 132 58.1 9.7e-16 1 CL0349
Cotton_A_06141_CDS 20 60 19 60 PF00010.26 HLH Domain 15 53 53 24.2 2.5e-05 1 No_clan
Cotton_A_13626_CDS 1 58 1 70 PF00071.22 Ras Domain 2 59 162 69.7 2.1e-19 1 CL0023
Cotton_A_19438_CDS 16 310 16 315 PF01992.16 vATP-synt_AC39 Family 1 299 336 311.3 9.9e-93 1 No_clan
Cotton_A_19438_CDS 318 400 318 402 PF00450.22 Peptidase_S10 Domain 1 83 419 99.0 3.8e-28 1 CL0028
Cotton_A_19438_CDS 401 544 400 557 PF00450.22 Peptidase_S10 Domain 115 258 419 95.7 4.1e-27 1 CL0028
Cotton_A_19438_CDS 557 608 547 608 PF00450.22 Peptidase_S10 Domain 378 419 419 27.6 1.8e-06 1 CL0028
Cotton_A_01058_CDS 33 84 33 84 PF08100.11 Dimerisation Domain 1 51 51 73.1 1.4e-20 1 CL0123
Cotton_A_01058_CDS 164 250 135 250 PF00891.18 Methyltransf_2 Domain 47 137 210 86.6 1.4e-24 1 CL0063
Cotton_A_28423_CDS 243 400 242 401 PF12214.8 TPX2_importin Family 2 165 166 157.5 3.4e-46 1 No_clan
Cotton_A_01989_CDS 10 137 10 137 PF02365.15 NAM Family 1 126 126 133.1 9.9e-39 1 No_clan
Cotton_A_03116_CDS 15 88 14 90 PF12895.7 ANAPC3 Domain 2 80 82 61.7 5.6e-17 1 CL0020
Cotton_A_03116_CDS 101 132 101 134 PF07719.17 TPR_2 Repeat 1 32 34 25.1 1.2e-05 1 CL0020
Cotton_A_03116_CDS 529 558 528 560 PF13181.6 TPR_8 Repeat 2 31 34 13.1 0.084 1 CL0020
Cotton_A_03116_CDS 569 611 569 613 PF13432.6 TPR_16 Family 4 49 68 20.8 0.00044 1 CL0020
Cotton_A_03116_CDS 667 695 666 697 PF13181.6 TPR_8 Repeat 4 32 34 12.3 0.16 1 CL0020
Cotton_A_28307_CDS 159 397 158 397 PF00931.22 NB-ARC Domain 2 252 252 228.0 1e-67 1 CL0023
Cotton_A_28307_CDS 532 589 532 592 PF13855.6 LRR_8 Repeat 1 58 61 36.9 2.3e-09 1 CL0022
Cotton_A_06000_CDS 380 414 374 414 PF00400.32 WD40 Repeat 4 38 38 16.2 0.014 1 CL0186
Cotton_A_06000_CDS 430 457 418 457 PF00400.32 WD40 Repeat 13 38 38 14.0 0.071 1 CL0186
Cotton_A_15393_CDS 2 83 1 83 PF00685.27 Sulfotransfer_1 Domain 195 267 267 50.0 2.7e-13 1 CL0023
Cotton_A_18924_CDS 130 315 129 317 PF12706.7 Lactamase_B_2 Domain 2 199 201 86.8 1.3e-24 1 CL0381
Cotton_A_32063_CDS 26 104 26 104 PF18290.1 Nudix_hydro Domain 1 80 80 106.1 6.9e-31 1 No_clan
Cotton_A_32063_CDS 117 236 116 243 PF00293.28 NUDIX Domain 2 122 131 81.6 4.9e-23 1 CL0261
Cotton_A_17438_CDS 43 94 42 116 PF00717.23 Peptidase_S24 Domain 2 53 70 38.2 9.9e-10 1 CL0299
Cotton_A_34939_CDS 9 105 5 105 PF00190.22 Cupin_1 Domain 46 142 151 104.4 3.9e-30 1 CL0029
Cotton_A_11634_CDS 25 80 25 81 PF00412.22 LIM Domain 1 57 58 39.9 3.8e-10 1 CL0167
Cotton_A_21759_CDS 73 263 71 308 PF00348.17 polyprenyl_synt Domain 3 194 256 108.3 3.1e-31 1 CL0613
Cotton_A_32572_CDS 1 160 1 160 PF14009.6 DUF4228 Family 1 179 179 72.4 5.7e-20 1 No_clan
Cotton_A_00362_CDS 403 530 403 531 PF13515.6 FUSC_2 Family 1 126 127 46.4 3.9e-12 1 CL0307
Cotton_A_31529_CDS 13 65 12 66 PF00584.20 SecE Family 2 54 55 54.9 5.9e-15 1 No_clan
Cotton_A_00433_CDS 24 107 21 112 PF00348.17 polyprenyl_synt Domain 4 88 256 86.3 1.7e-24 1 CL0613
Cotton_A_00433_CDS 112 221 108 240 PF00348.17 polyprenyl_synt Domain 119 232 256 86.1 2e-24 1 CL0613
Cotton_A_17650_CDS 99 270 98 270 PF04144.13 SCAMP Family 2 174 174 166.7 5.8e-49 1 No_clan
Cotton_A_03037_CDS 1264 1357 1140 1358 PF10513.9 EPL1 Family 80 156 157 32.7 8.9e-08 1 No_clan
Cotton_A_01232_CDS 110 435 107 438 PF00520.31 Ion_trans Family 5 242 245 118.4 3e-34 1 CL0030
Cotton_A_01232_CDS 532 619 528 625 PF00027.29 cNMP_binding Domain 6 83 89 31.6 1.3e-07 1 CL0029
Cotton_A_06948_CDS 267 582 259 609 PF08553.10 VID27 Domain 12 305 356 152.3 1.7e-44 1 CL0186
Cotton_A_33809_CDS 193 369 190 369 PF00005.27 ABC_tran Domain 5 137 137 65.6 6.2e-18 1 CL0023
Cotton_A_33809_CDS 408 490 408 493 PF12848.7 ABC_tran_Xtn Domain 1 84 85 82.8 1.3e-23 1 CL0023
Cotton_A_33809_CDS 522 652 521 652 PF00005.27 ABC_tran Domain 2 137 137 79.3 3.9e-22 1 CL0023
Cotton_A_09032_CDS 131 382 116 387 PF00850.19 Hist_deacetyl Domain 15 291 307 142.0 2.8e-41 1 CL0302
Cotton_A_02053_CDS 4 89 4 106 PF02362.21 B3 Family 1 85 101 38.6 7.4e-10 1 CL0405
Cotton_A_00358_CDS 72 309 62 311 PF07714.17 Pkinase_Tyr Domain 14 257 259 94.3 7e-27 1 CL0016
Cotton_A_26238_CDS 23 172 22 173 PF04043.15 PMEI Domain 2 153 154 94.4 8.5e-27 1 No_clan
Cotton_A_00623_CDS 114 165 113 165 PF03478.18 DUF295 Domain 2 55 55 26.2 4.3e-06 1 No_clan
Cotton_A_34012_CDS 1 99 1 102 PF05879.12 RHD3 Family 1 100 743 194.0 3.7e-57 1 CL0023
Cotton_A_27724_CDS 17 334 16 334 PF16913.5 PUNUT Family 2 322 322 422.3 1.2e-126 1 CL0184
Cotton_A_38228_CDS 145 184 139 184 PF13855.6 LRR_8 Repeat 22 61 61 28.9 7.2e-07 1 CL0022
Cotton_A_38228_CDS 269 328 266 328 PF13855.6 LRR_8 Repeat 2 61 61 37.5 1.4e-09 1 CL0022
Cotton_A_38228_CDS 461 669 460 726 PF00069.25 Pkinase Domain 2 212 264 142.1 2.1e-41 1 CL0016
Cotton_A_08906_CDS 14 103 4 105 PF02519.14 Auxin_inducible Family 5 87 90 88.0 3.4e-25 1 No_clan
Cotton_A_30440_CDS 34 209 34 209 PF00270.29 DEAD Domain 1 176 176 162.8 6.4e-48 1 CL0023
Cotton_A_30440_CDS 247 352 243 352 PF00271.31 Helicase_C Family 5 111 111 105.1 2.5e-30 1 CL0023
Cotton_A_34677_CDS 11 43 2 58 PF05000.17 RNA_pol_Rpb1_4 Domain 47 80 108 35.2 9.3e-09 1 No_clan
Cotton_A_34677_CDS 58 251 58 564 PF04998.17 RNA_pol_Rpb1_5 Domain 1 114 267 139.1 1.8e-40 1 No_clan
Cotton_A_34677_CDS 1081 1167 1075 1170 PF04998.17 RNA_pol_Rpb1_5 Domain 210 264 267 30.1 3e-07 1 No_clan
Cotton_A_29790_CDS 368 527 351 547 PF00566.18 RabGAP-TBC Family 35 195 215 115.2 3.3e-33 1 No_clan
Cotton_A_16858_CDS 115 399 115 399 PF00069.25 Pkinase Domain 1 264 264 228.5 8.9e-68 1 CL0016
Cotton_A_10085_CDS 1 69 1 71 PF04560.20 RNA_pol_Rpb2_7 Domain 8 85 87 62.0 5.5e-17 1 No_clan
Cotton_A_31083_CDS 184 282 184 288 PF03168.13 LEA_2 Domain 1 93 101 27.7 2.9e-06 1 CL0159
Cotton_A_21276_CDS 161 398 157 399 PF00931.22 NB-ARC Domain 3 251 252 140.4 5.6e-41 1 CL0023
Cotton_A_02637_CDS 40 219 40 219 PF11891.8 RETICULATA-like Family 1 177 177 213.4 2.1e-63 1 No_clan
Cotton_A_22512_CDS 12 99 12 99 PF01749.20 IBB Family 1 90 90 87.8 4.7e-25 1 CL0020
Cotton_A_22512_CDS 110 150 109 150 PF00514.23 Arm Repeat 2 41 41 39.6 3.4e-10 1 CL0020
Cotton_A_22512_CDS 153 191 152 192 PF00514.23 Arm Repeat 2 40 41 44.0 1.4e-11 1 CL0020
Cotton_A_22512_CDS 194 235 194 235 PF00514.23 Arm Repeat 1 41 41 28.2 1.3e-06 1 CL0020
Cotton_A_22512_CDS 248 276 247 276 PF00514.23 Arm Repeat 13 41 41 28.3 1.2e-06 1 CL0020
Cotton_A_22512_CDS 279 317 278 318 PF00514.23 Arm Repeat 2 40 41 33.3 3.3e-08 1 CL0020
Cotton_A_22512_CDS 321 361 320 361 PF00514.23 Arm Repeat 2 41 41 37.7 1.3e-09 1 CL0020
Cotton_A_22512_CDS 363 402 363 403 PF00514.23 Arm Repeat 1 40 41 43.4 2.1e-11 1 CL0020
Cotton_A_22512_CDS 407 444 406 446 PF00514.23 Arm Repeat 2 39 41 31.5 1.2e-07 1 CL0020
Cotton_A_22512_CDS 461 505 461 515 PF16186.5 Arm_3 Family 1 45 53 72.3 1.7e-20 1 CL0020
Cotton_A_12376_CDS 16 197 15 197 PF00722.21 Glyco_hydro_16 Domain 2 177 177 195.1 6.6e-58 1 CL0004
Cotton_A_12376_CDS 211 256 208 256 PF06955.12 XET_C Family 5 47 47 31.8 9.3e-08 1 CL0004
Cotton_A_04713_CDS 445 777 445 779 PF00225.23 Kinesin Domain 1 331 333 360.7 6.1e-108 1 CL0023
Cotton_A_15245_CDS 7 37 7 37 PF01535.20 PPR Family 1 31 31 43.8 1.4e-11 1 CL0020
Cotton_A_15245_CDS 38 66 38 68 PF01535.20 PPR Family 1 29 31 20.3 0.00046 1 CL0020
Cotton_A_15245_CDS 70 93 69 97 PF01535.20 PPR Family 2 25 31 12.7 0.12 1 CL0020
Cotton_A_15245_CDS 132 158 132 159 PF01535.20 PPR Family 1 27 31 30.6 2.3e-07 1 CL0020
Cotton_A_15245_CDS 164 191 163 193 PF01535.20 PPR Family 2 29 31 31.9 8.5e-08 1 CL0020
Cotton_A_15245_CDS 193 235 191 239 PF13041.6 PPR_2 Repeat 3 45 50 39.1 6.1e-10 1 CL0020
Cotton_A_29412_CDS 1 72 1 75 PF00574.23 CLP_protease Domain 109 179 182 54.1 1.7e-14 1 CL0127
Cotton_A_29412_CDS 118 227 114 231 PF01694.22 Rhomboid Family 6 130 150 55.1 8e-15 1 CL0207
Cotton_A_27484_CDS 126 169 125 169 PF13639.6 zf-RING_2 Domain 2 44 44 49.6 3.6e-13 1 CL0229
Cotton_A_16330_CDS 2 44 1 45 PF00847.20 AP2 Domain 10 53 54 32.4 8.2e-08 1 CL0081
Cotton_A_05392_CDS 53 87 53 87 PF06747.13 CHCH Domain 1 35 35 32.7 5.6e-08 1 CL0351
Cotton_A_03555_CDS 224 276 223 276 PF14416.6 PMR5N Domain 2 53 53 71.6 4.9e-20 1 No_clan
Cotton_A_03555_CDS 277 564 277 565 PF13839.6 PC-Esterase Family 1 267 283 218.6 1.4e-64 1 CL0264
Cotton_A_03555_CDS 588 858 586 861 PF05890.12 Ebp2 Family 3 255 268 241.3 1.3e-71 1 No_clan
Cotton_A_36658_CDS 39 124 37 128 PF00153.27 Mito_carr Family 4 91 97 81.1 4.2e-23 1 No_clan
Cotton_A_36658_CDS 141 233 139 234 PF00153.27 Mito_carr Family 3 96 97 88.7 1.8e-25 1 No_clan
Cotton_A_36658_CDS 243 346 242 349 PF00153.27 Mito_carr Family 2 93 97 87.0 5.9e-25 1 No_clan
Cotton_A_02697_CDS 60 258 59 258 PF00834.19 Ribul_P_3_epim Domain 2 198 198 297.3 3.8e-89 1 CL0036
Cotton_A_13416_CDS 95 122 95 129 PF00786.28 PBD Domain 1 29 59 23.6 5e-05 1 No_clan
Cotton_A_13416_CDS 178 313 178 318 PF00620.27 RhoGAP Domain 1 146 152 74.5 7.9e-21 1 CL0409
Cotton_A_11308_CDS 53 113 52 113 PF00046.29 Homeodomain Domain 2 57 57 53.7 1.3e-14 1 CL0123
Cotton_A_05817_CDS 93 297 93 304 PF07859.13 Abhydrolase_3 Domain 1 195 211 176.8 5.1e-52 1 CL0028
Cotton_A_09174_CDS 92 161 92 161 PF00076.22 RRM_1 Domain 1 70 70 67.5 6.9e-19 1 CL0221
Cotton_A_09174_CDS 189 258 189 258 PF00076.22 RRM_1 Domain 1 70 70 60.7 8.5e-17 1 CL0221
Cotton_A_02581_CDS 26 449 26 449 PF03514.14 GRAS Family 1 374 374 454.1 3.4e-136 1 CL0063
Cotton_A_29436_CDS 33 121 33 121 PF14632.6 SPT6_acidic Family 1 89 89 57.7 1.3e-15 1 No_clan
Cotton_A_29436_CDS 728 884 725 884 PF14639.6 YqgF Domain 4 150 150 60.4 1.6e-16 1 CL0580
Cotton_A_29436_CDS 888 989 888 990 PF14635.6 HHH_7 Domain 1 103 104 64.4 9.8e-18 1 CL0198
Cotton_A_29436_CDS 1004 1090 1003 1090 PF17674.1 HHH_9 Domain 2 70 70 25.2 2.3e-05 1 CL0198
Cotton_A_29436_CDS 1204 1421 1204 1421 PF14633.6 SH2_2 Domain 1 216 216 252.0 3.7e-75 1 CL0541
Cotton_A_13731_CDS 26 253 26 253 PF05648.14 PEX11 Family 1 223 223 154.7 2.4e-45 1 No_clan
Cotton_A_06043_CDS 102 183 100 184 PF04182.12 B-block_TFIIIC Family 3 74 75 64.9 5.7e-18 1 CL0123
Cotton_A_06043_CDS 1859 1942 1859 1942 PF04110.13 APG12 Family 1 87 87 107.3 3.8e-31 1 CL0072
Cotton_A_12326_CDS 28 407 28 408 PF12819.7 Malectin_like Domain 1 335 336 154.8 3.2e-45 1 CL0202
Cotton_A_12326_CDS 533 796 529 799 PF07714.17 Pkinase_Tyr Domain 7 256 259 165.3 1.5e-48 1 CL0016
Cotton_A_16028_CDS 90 137 85 137 PF04570.14 zf-FLZ Domain 7 54 54 89.0 9.6e-26 1 CL0175
Cotton_A_26452_CDS 116 222 81 222 PF00586.24 AIRS Domain 3 94 94 56.3 3.7e-15 1 No_clan
Cotton_A_26452_CDS 235 397 235 400 PF02769.22 AIRS_C Domain 2 151 156 127.2 5.7e-37 1 No_clan
Cotton_A_25352_CDS 59 133 58 134 PF03061.22 4HBT Domain 2 78 79 33.3 4.5e-08 1 CL0050
Cotton_A_29583_CDS 57 223 55 224 PF05042.13 Caleosin Family 3 169 170 251.6 3.6e-75 1 CL0220
Cotton_A_01870_CDS 261 523 240 527 PF00118.24 Cpn60_TCP1 Family 120 370 491 70.5 1.1e-19 1 No_clan
Cotton_A_01870_CDS 1420 1586 1413 1590 PF01504.18 PIP5K Family 10 168 274 119.8 1.2e-34 1 CL0016
Cotton_A_01870_CDS 1589 1640 1583 1641 PF01504.18 PIP5K Family 224 273 274 33.5 2.5e-08 1 CL0016
Cotton_A_06167_CDS 36 100 17 100 PF12796.7 Ank_2 Repeat 27 83 83 35.6 1.1e-08 1 CL0465
Cotton_A_06167_CDS 164 419 161 419 PF07714.17 Pkinase_Tyr Domain 4 259 259 209.3 5.9e-62 1 CL0016
Cotton_A_31008_CDS 4 677 4 678 PF06075.12 DUF936 Family 1 691 692 629.8 8.8e-189 1 No_clan
Cotton_A_25218_CDS 18 62 16 64 PF00249.31 Myb_DNA-binding Domain 4 44 46 30.5 3.1e-07 1 CL0123
Cotton_A_25218_CDS 116 160 114 161 PF00249.31 Myb_DNA-binding Domain 3 45 46 42.8 4.3e-11 1 CL0123
Cotton_A_33971_CDS 123 385 123 385 PF00069.25 Pkinase Domain 1 264 264 238.1 1.1e-70 1 CL0016
Cotton_A_34938_CDS 1 106 1 106 PF00282.19 Pyridoxal_deC Domain 272 375 375 90.6 8.1e-26 1 CL0061
Cotton_A_38949_CDS 96 334 95 336 PF05637.12 Glyco_transf_34 Family 2 237 239 236.5 3.3e-70 1 CL0110
Cotton_A_26189_CDS 376 603 376 603 PF08572.10 PRP3 Domain 1 223 223 214.4 1.7e-63 1 No_clan
Cotton_A_26189_CDS 628 752 627 753 PF06544.12 DUF1115 Domain 2 145 146 142.6 9.4e-42 1 CL0622
Cotton_A_14889_CDS 619 660 617 660 PF13639.6 zf-RING_2 Domain 3 44 44 42.4 6.2e-11 1 CL0229
Cotton_A_22662_CDS 19 285 18 287 PF00248.21 Aldo_ket_red Domain 2 292 294 166.6 6.9e-49 1 No_clan
Cotton_A_22662_CDS 357 602 348 605 PF00248.21 Aldo_ket_red Domain 28 291 294 157.8 3.5e-46 1 No_clan
Cotton_A_14303_CDS 191 221 191 221 PF00397.26 WW Domain 1 31 31 47.1 1.8e-12 1 CL0680
Cotton_A_14303_CDS 238 266 237 266 PF00397.26 WW Domain 3 31 31 44.7 1e-11 1 CL0680
Cotton_A_15055_CDS 43 166 39 166 PF04852.12 DUF640 Family 5 126 126 160.0 2.8e-47 1 No_clan
Cotton_A_12730_CDS 16 92 14 92 PF01423.22 LSM Domain 3 67 67 67.4 6.5e-19 1 CL0527
Cotton_A_11604_CDS 148 563 147 564 PF00654.20 Voltage_CLC Family 2 353 354 301.4 9.6e-90 1 No_clan
Cotton_A_11604_CDS 717 768 710 770 PF00571.28 CBS Domain 6 53 57 18.1 0.0027 1 No_clan
Cotton_A_40094_CDS 57 101 57 102 PF00249.31 Myb_DNA-binding Domain 1 45 46 36.4 4.5e-09 1 CL0123
Cotton_A_09056_CDS 33 357 30 357 PF00704.28 Glyco_hydro_18 Domain 3 312 312 189.5 1.2e-55 1 CL0058
Cotton_A_09056_CDS 456 538 453 540 PF07714.17 Pkinase_Tyr Domain 4 92 259 50.4 1.7e-13 1 CL0016
Cotton_A_09056_CDS 539 666 536 668 PF07714.17 Pkinase_Tyr Domain 145 257 259 38.0 1.1e-09 1 CL0016
Cotton_A_22656_CDS 7 139 6 139 PF04535.12 DUF588 Domain 2 150 150 99.5 1.4e-28 1 CL0396
Cotton_A_15999_CDS 48 662 48 663 PF03169.15 OPT Family 1 615 616 517.7 4.8e-155 1 No_clan
Cotton_A_14937_CDS 86 228 84 235 PF00106.25 adh_short Domain 3 141 195 67.9 8e-19 1 CL0063
Cotton_A_02757_CDS 79 341 79 343 PF00685.27 Sulfotransfer_1 Domain 1 265 267 226.6 3.8e-67 1 CL0023
Cotton_A_38131_CDS 35 256 34 273 PF00083.24 Sugar_tr Family 2 236 452 190.4 5.2e-56 1 CL0015
Cotton_A_16909_CDS 2 46 1 47 PF01423.22 LSM Domain 20 65 67 50.0 1.8e-13 1 CL0527
Cotton_A_36593_CDS 82 161 81 161 PF03330.18 DPBB_1 Domain 2 83 83 62.8 2.7e-17 1 CL0199
Cotton_A_36593_CDS 173 256 173 256 PF01357.21 Pollen_allerg_1 Domain 1 80 80 96.3 8.1e-28 1 CL0159
Cotton_A_27481_CDS 11 169 11 171 PF00071.22 Ras Domain 1 159 162 196.9 1.6e-58 1 CL0023
Cotton_A_37298_CDS 1 79 1 81 PF00149.28 Metallophos Domain 120 202 204 35.0 1.9e-08 1 CL0163
Cotton_A_21362_CDS 491 892 488 894 PF02181.23 FH2 Family 4 370 372 351.9 4.1e-105 1 No_clan
Cotton_A_25231_CDS 266 399 189 424 PF00201.18 UDPGT Family 268 388 499 96.5 1.6e-27 1 CL0113
Cotton_A_30015_CDS 109 231 109 232 PF13837.6 Myb_DNA-bind_4 Domain 1 89 90 68.5 4.8e-19 1 CL0123
Cotton_A_09114_CDS 435 477 434 477 PF13639.6 zf-RING_2 Domain 2 44 44 42.6 5.4e-11 1 CL0229
Cotton_A_08039_CDS 134 173 116 173 PF11926.8 DUF3444 Family 171 212 212 26.8 3.5e-06 1 No_clan
Cotton_A_33801_CDS 38 151 37 152 PF08240.12 ADH_N Domain 2 108 109 95.3 1.9e-27 1 CL0296
Cotton_A_33801_CDS 194 317 194 318 PF00107.26 ADH_zinc_N Family 1 129 130 62.8 3e-17 1 CL0063
Cotton_A_34418_CDS 71 96 69 103 PF00010.26 HLH Domain 4 29 53 33.4 3.1e-08 1 No_clan
Cotton_A_10898_CDS 19 83 19 84 PF01918.21 Alba Family 1 66 67 69.1 2.1e-19 1 CL0441
Cotton_A_11174_CDS 393 463 392 464 PF04564.15 U-box Domain 2 71 73 56.2 2.9e-15 1 CL0229
Cotton_A_11174_CDS 1092 1127 1089 1127 PF00400.32 WD40 Repeat 4 38 38 14.4 0.055 1 CL0186
Cotton_A_27262_CDS 81 114 68 114 PF00400.32 WD40 Repeat 9 38 38 13.0 0.15 1 CL0186
Cotton_A_27262_CDS 127 165 127 165 PF00400.32 WD40 Repeat 1 38 38 17.4 0.006 1 CL0186
Cotton_A_15051_CDS 23 266 4 271 PF14938.6 SNAP Domain 26 273 282 97.6 8.1e-28 1 CL0020
Cotton_A_15403_CDS 46 193 40 196 PF05470.12 eIF-3c_N Family 8 155 593 180.7 3.9e-53 1 No_clan
Cotton_A_15403_CDS 188 620 185 620 PF05470.12 eIF-3c_N Family 179 593 593 622.0 9.3e-187 1 No_clan
Cotton_A_15403_CDS 628 756 627 757 PF01399.27 PCI Domain 2 104 105 62.1 5.9e-17 1 CL0123
Cotton_A_30624_CDS 17 81 15 82 PF01423.22 LSM Domain 3 66 67 60.2 1.1e-16 1 CL0527
Cotton_A_13044_CDS 37 555 37 560 PF03098.15 An_peroxidase Domain 1 522 529 374.6 7.7e-112 1 CL0617
Cotton_A_15659_CDS 24 67 24 69 PF00249.31 Myb_DNA-binding Domain 1 44 46 49.8 2.8e-13 1 CL0123
Cotton_A_34056_CDS 536 568 535 569 PF02037.27 SAP Family 2 34 35 35.3 6.6e-09 1 CL0306
Cotton_A_19026_CDS 39 486 38 490 PF00067.22 p450 Domain 2 457 463 334.9 7.2e-100 1 No_clan
Cotton_A_28891_CDS 68 99 67 104 PF12937.7 F-box-like Domain 2 32 48 24.9 1.4e-05 1 CL0271
Cotton_A_28891_CDS 235 258 235 259 PF13516.6 LRR_6 Repeat 1 23 24 17.3 0.0034 1 CL0022
Cotton_A_28891_CDS 471 493 470 494 PF13516.6 LRR_6 Repeat 2 23 24 11.8 0.2 1 CL0022
Cotton_A_04903_CDS 30 171 29 172 PF04043.15 PMEI Domain 2 152 154 62.0 8.2e-17 1 No_clan
Cotton_A_28622_CDS 176 224 176 225 PF01344.25 Kelch_1 Repeat 1 45 46 27.8 1.4e-06 1 CL0186
Cotton_A_28622_CDS 228 272 227 273 PF01344.25 Kelch_1 Repeat 2 45 46 41.3 8.2e-11 1 CL0186
Cotton_A_07107_CDS 92 220 83 220 PF04073.15 tRNA_edit Family 19 123 123 32.7 6.5e-08 1 No_clan
Cotton_A_28010_CDS 67 100 67 100 PF00515.28 TPR_1 Repeat 1 34 34 32.0 7.1e-08 1 CL0020
Cotton_A_13473_CDS 271 631 270 631 PF03081.15 Exo70 Family 2 376 376 398.5 2.9e-119 1 CL0295
Cotton_A_18489_CDS 84 109 83 109 PF12171.8 zf-C2H2_jaz Family 2 27 27 28.3 1.5e-06 1 CL0361
Cotton_A_03886_CDS 148 194 147 195 PF13920.6 zf-C3HC4_3 Domain 2 49 50 37.5 1.6e-09 1 CL0229
Cotton_A_38669_CDS 92 294 92 314 PF00854.21 PTR2 Family 1 180 395 167.9 3e-49 1 CL0015
Cotton_A_25482_CDS 63 102 60 110 PF00170.21 bZIP_1 Family 4 43 64 33.1 4.5e-08 1 CL0018
Cotton_A_25482_CDS 151 226 150 226 PF14144.6 DOG1 Family 2 77 77 97.4 4.2e-28 1 No_clan
Cotton_A_08210_CDS 122 141 122 141 PF15365.6 PNRC Motif 1 20 20 31.1 1.4e-07 1 No_clan
Cotton_A_19902_CDS 1 94 1 95 PF00862.19 Sucrose_synth Family 27 120 548 89.5 1.6e-25 1 CL0113
Cotton_A_39195_CDS 17 103 11 103 PF00125.24 Histone Domain 45 131 131 68.8 5.6e-19 1 CL0012
Cotton_A_39195_CDS 104 133 104 134 PF16211.5 Histone_H2A_C Family 1 31 35 41.4 8.8e-11 1 No_clan
Cotton_A_11137_CDS 84 156 82 157 PF01883.19 FeS_assembly_P Domain 3 73 74 60.8 1.1e-16 1 CL0232
Cotton_A_11137_CDS 177 414 176 419 PF10609.9 ParA Family 2 241 246 265.2 5.1e-79 1 CL0023
Cotton_A_11137_CDS 435 518 433 519 PF06155.12 DUF971 Family 3 84 85 43.3 4.5e-11 1 No_clan
Cotton_A_23392_CDS 68 249 68 250 PF17047.5 SMP_LBD Domain 1 179 180 57.6 1.1e-15 1 CL0648
Cotton_A_25324_CDS 31 100 31 101 PF07983.13 X8 Domain 1 75 76 73.5 1.7e-20 1 No_clan
Cotton_A_07853_CDS 5 144 2 145 PF00134.23 Cyclin_N Domain 5 126 127 65.1 4.9e-18 1 CL0065
Cotton_A_07853_CDS 153 236 150 240 PF00134.23 Cyclin_N Domain 38 121 127 20.7 0.00027 1 CL0065
Cotton_A_20262_CDS 34 130 29 133 PF00450.22 Peptidase_S10 Domain 8 107 419 96.6 2.1e-27 1 CL0028
Cotton_A_14629_CDS 1 94 1 97 PF00752.17 XPG_N Family 1 98 101 45.6 7.7e-12 1 CL0280
Cotton_A_14629_CDS 133 216 131 216 PF00867.18 XPG_I Family 3 94 94 67.9 7.2e-19 1 CL0464
Cotton_A_14958_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 54.2 1.2e-14 1 CL0123
Cotton_A_14958_CDS 67 111 67 112 PF00249.31 Myb_DNA-binding Domain 1 45 46 50.1 2.3e-13 1 CL0123
Cotton_A_21788_CDS 3 42 3 42 PF01779.17 Ribosomal_L29e Family 1 40 40 85.0 3.1e-24 1 No_clan
Cotton_A_14353_CDS 1 104 1 109 PF04825.13 Rad21_Rec8_N Family 1 105 110 104.8 2.5e-30 1 No_clan
Cotton_A_14353_CDS 583 635 581 635 PF04824.16 Rad21_Rec8 Family 3 55 55 55.9 1.9e-15 1 CL0157
Cotton_A_18172_CDS 30 198 29 199 PF09783.9 Vac_ImportDeg Family 2 161 162 160.3 3.4e-47 1 No_clan
Cotton_A_33204_CDS 82 137 80 153 PF01963.17 TraB Family 3 58 263 34.9 1.4e-08 1 CL0572
Cotton_A_22016_CDS 85 362 84 362 PF07714.17 Pkinase_Tyr Domain 2 259 259 196.7 3.9e-58 1 CL0016
Cotton_A_07541_CDS 26 88 24 105 PF14368.6 LTP_2 Family 3 65 97 23.9 3.3e-05 1 CL0482
Cotton_A_08137_CDS 7 81 1 87 PF01053.20 Cys_Met_Meta_PP Domain 296 367 382 29.7 2.2e-07 1 CL0061
Cotton_A_20864_CDS 313 356 311 358 PF00646.33 F-box Domain 3 46 48 22.1 0.0001 1 CL0271
Cotton_A_24728_CDS 23 301 23 301 PF00069.25 Pkinase Domain 1 264 264 203.3 4.4e-60 1 CL0016
Cotton_A_12344_CDS 144 628 144 628 PF01532.20 Glyco_hydro_47 Domain 1 458 458 528.3 1.7e-158 1 CL0059
Cotton_A_15045_CDS 188 219 187 220 PF00515.28 TPR_1 Repeat 2 33 34 28.8 7.1e-07 1 CL0020
Cotton_A_09779_CDS 17 118 3 119 PF00134.23 Cyclin_N Domain 29 126 127 89.4 1.5e-25 1 CL0065
Cotton_A_09779_CDS 127 218 121 244 PF02984.19 Cyclin_C Domain 3 86 119 22.9 6.8e-05 1 CL0065
Cotton_A_29538_CDS 6 106 2 113 PF12457.8 TIP_N Family 3 97 104 79.0 2.9e-22 1 No_clan
Cotton_A_29538_CDS 197 238 197 240 PF01585.23 G-patch Family 1 43 45 52.9 2.4e-14 1 CL0449
Cotton_A_29538_CDS 412 680 412 680 PF07842.12 GCFC Family 1 277 277 293.5 1.8e-87 1 No_clan
Cotton_A_32158_CDS 34 83 33 83 PF08711.11 Med26 Domain 2 53 53 39.8 3.3e-10 1 No_clan
Cotton_A_32158_CDS 196 310 194 311 PF07500.14 TFIIS_M Domain 3 111 112 110.6 5.6e-32 1 No_clan
Cotton_A_32158_CDS 324 362 324 362 PF01096.18 TFIIS_C Domain 1 39 39 66.8 1.1e-18 1 CL0167
Cotton_A_20651_CDS 17 56 15 56 PF08263.12 LRRNT_2 Family 3 41 41 32.2 9.5e-08 1 No_clan
Cotton_A_20651_CDS 85 144 80 144 PF13855.6 LRR_8 Repeat 2 61 61 34.8 9.9e-09 1 CL0022
Cotton_A_20651_CDS 158 216 156 216 PF13855.6 LRR_8 Repeat 3 61 61 36.1 4e-09 1 CL0022
Cotton_A_20651_CDS 880 1089 876 1149 PF00069.25 Pkinase Domain 5 205 264 143.1 1e-41 1 CL0016
Cotton_A_37134_CDS 71 87 71 88 PF00098.23 zf-CCHC Domain 1 17 18 22.6 7.7e-05 1 CL0511
Cotton_A_26811_CDS 2 131 1 132 PF00332.18 Glyco_hydro_17 Domain 13 143 313 84.9 7.5e-24 1 CL0058
Cotton_A_40716_CDS 24 111 21 115 PF00406.22 ADK Domain 4 91 151 116.2 1.4e-33 1 CL0023
Cotton_A_23334_CDS 19 59 19 59 PF08263.12 LRRNT_2 Family 1 41 41 37.0 3e-09 1 No_clan
Cotton_A_23334_CDS 110 170 110 170 PF13855.6 LRR_8 Repeat 1 61 61 37.6 1.3e-09 1 CL0022
Cotton_A_23334_CDS 284 487 283 585 PF00069.25 Pkinase Domain 2 198 264 138.4 2.7e-40 1 CL0016
Cotton_A_15135_CDS 179 215 161 219 PF08711.11 Med26 Domain 13 49 53 43.1 3.2e-11 1 No_clan
Cotton_A_23100_CDS 14 153 6 156 PF00190.22 Cupin_1 Domain 10 148 151 30.2 2.9e-07 1 CL0029
Cotton_A_23100_CDS 203 309 191 320 PF00190.22 Cupin_1 Domain 12 122 151 47.5 1.4e-12 1 CL0029
Cotton_A_28360_CDS 2 50 1 51 PF00076.22 RRM_1 Domain 21 69 70 32.1 7.5e-08 1 CL0221
Cotton_A_07135_CDS 5 27 5 30 PF13912.6 zf-C2H2_6 Domain 3 25 27 21.2 0.00021 1 CL0361
Cotton_A_07135_CDS 207 227 206 227 PF13912.6 zf-C2H2_6 Domain 2 22 27 18.8 0.0012 1 CL0361
Cotton_A_07135_CDS 250 272 249 273 PF13912.6 zf-C2H2_6 Domain 2 24 27 41.3 1e-10 1 CL0361
Cotton_A_17026_CDS 44 132 43 132 PF12220.8 U1snRNP70_N Family 2 93 93 72.0 4.8e-20 1 CL0221
Cotton_A_22933_CDS 26 122 26 122 PF03168.13 LEA_2 Domain 1 101 101 63.5 2.1e-17 1 CL0159
Cotton_A_37709_CDS 122 380 122 380 PF00069.25 Pkinase Domain 1 264 264 249.1 4.8e-74 1 CL0016
Cotton_A_37709_CDS 428 488 425 489 PF13499.6 EF-hand_7 Domain 4 70 71 43.6 2.9e-11 1 CL0220
Cotton_A_37709_CDS 498 559 497 559 PF13499.6 EF-hand_7 Domain 2 71 71 53.3 2.9e-14 1 CL0220
Cotton_A_37709_CDS 589 841 588 841 PF05116.13 S6PP Family 2 247 247 336.0 1.4e-100 1 CL0137
Cotton_A_37709_CDS 842 974 842 974 PF08472.10 S6PP_C Family 1 133 133 184.6 6.5e-55 1 No_clan
Cotton_A_05675_CDS 28 175 28 176 PF04043.15 PMEI Domain 1 153 154 129.5 1.3e-37 1 No_clan
Cotton_A_13579_CDS 301 789 301 790 PF04437.13 RINT1_TIP1 Family 1 498 499 114.9 4.4e-33 1 No_clan
Cotton_A_29724_CDS 40 200 40 200 PF01554.18 MatE Family 1 161 161 97.9 4.5e-28 1 CL0222
Cotton_A_29724_CDS 263 422 261 423 PF01554.18 MatE Family 4 160 161 97.5 6e-28 1 CL0222
Cotton_A_05834_CDS 202 324 201 325 PF07738.13 Sad1_UNC Family 2 131 132 107.8 3.9e-31 1 CL0202
Cotton_A_39465_CDS 24 201 23 203 PF12710.7 HAD Family 2 186 188 55.9 7e-15 1 CL0137
Cotton_A_39465_CDS 298 390 281 400 PF01553.21 Acyltransferase Family 13 119 135 30.6 2.1e-07 1 CL0228
Cotton_A_36788_CDS 110 195 108 196 PF00439.25 Bromodomain Domain 3 83 84 64.2 8.4e-18 1 No_clan
Cotton_A_36788_CDS 269 332 269 332 PF17035.5 BET Domain 1 64 64 74.5 5.3e-21 1 CL0665
Cotton_A_08468_CDS 94 132 93 134 PF03790.13 KNOX1 Family 2 40 43 81.8 2e-23 1 No_clan
Cotton_A_08468_CDS 146 192 145 192 PF03791.13 KNOX2 Family 2 48 48 74.3 3.8e-21 1 No_clan
Cotton_A_08468_CDS 231 252 231 252 PF03789.13 ELK Domain 1 22 22 40.7 1.7e-10 1 No_clan
Cotton_A_08468_CDS 271 310 271 310 PF05920.11 Homeobox_KN Family 1 40 40 61.2 6.3e-17 1 CL0123
Cotton_A_07090_CDS 131 265 130 265 PF04116.13 FA_hydroxylase Family 2 133 133 106.7 1.1e-30 1 No_clan
Cotton_A_01244_CDS 117 417 116 417 PF00443.29 UCH Family 2 257 257 180.2 5.1e-53 1 CL0125
Cotton_A_11424_CDS 245 377 241 378 PF00664.23 ABC_membrane Family 22 157 274 42.6 5.6e-11 1 CL0241
Cotton_A_32127_CDS 3 186 2 191 PF03721.14 UDPG_MGDP_dh_N Domain 2 183 187 220.1 1.7e-65 1 CL0063
Cotton_A_32127_CDS 210 304 210 305 PF00984.19 UDPG_MGDP_dh Domain 1 93 94 111.2 2.1e-32 1 CL0106
Cotton_A_32127_CDS 328 451 328 452 PF03720.15 UDPG_MGDP_dh_C Domain 1 104 105 124.1 2.9e-36 1 CL0039
Cotton_A_25098_CDS 56 247 46 254 PF00483.23 NTP_transferase Family 38 241 248 126.8 1e-36 1 CL0110
Cotton_A_25098_CDS 279 313 278 313 PF00132.24 Hexapep Repeat 2 36 36 30.8 1.6e-07 1 CL0536
Cotton_A_20788_CDS 109 134 108 134 PF01535.20 PPR Family 6 31 31 21.4 0.00019 1 CL0020
Cotton_A_20788_CDS 172 219 172 220 PF13041.6 PPR_2 Repeat 1 48 50 51.4 9e-14 1 CL0020
Cotton_A_16910_CDS 14 200 14 200 PF13419.6 HAD_2 Family 1 178 178 83.1 2.5e-23 1 CL0137
Cotton_A_29046_CDS 721 802 720 802 PF13889.6 Chromosome_seg Family 2 55 55 87.6 4.3e-25 1 No_clan
Cotton_A_06244_CDS 154 231 154 232 PF11282.8 DUF3082 Family 1 79 80 102.8 8.5e-30 1 No_clan
Cotton_A_05572_CDS 31 143 29 145 PF07732.15 Cu-oxidase_3 Domain 3 117 119 131.0 2e-38 1 CL0026
Cotton_A_05572_CDS 157 305 155 306 PF00394.22 Cu-oxidase Domain 3 158 159 149.0 1.2e-43 1 CL0026
Cotton_A_05572_CDS 407 539 406 540 PF07731.14 Cu-oxidase_2 Domain 2 136 137 137.2 2.9e-40 1 CL0026
Cotton_A_29736_CDS 53 343 51 343 PF01095.19 Pectinesterase Family 3 298 298 225.3 6.5e-67 1 CL0268
Cotton_A_23155_CDS 43 452 42 453 PF00275.20 EPSP_synthase Family 2 416 417 291.0 1.2e-86 1 CL0290
Cotton_A_05930_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 49.8 2.9e-13 1 CL0123
Cotton_A_05930_CDS 67 112 67 112 PF00249.31 Myb_DNA-binding Domain 1 46 46 51.6 8e-14 1 CL0123
Cotton_A_00327_CDS 29 102 29 104 PF03810.19 IBN_N Family 1 72 74 60.2 1.3e-16 1 CL0020
Cotton_A_27902_CDS 76 313 74 339 PF00815.20 Histidinol_dh Family 3 240 409 300.6 1.8e-89 1 CL0099
Cotton_A_27902_CDS 344 513 340 513 PF00815.20 Histidinol_dh Family 240 409 409 204.9 2.1e-60 1 CL0099
Cotton_A_02842_CDS 29 73 27 73 PF08263.12 LRRNT_2 Family 3 41 41 36.5 4.4e-09 1 No_clan
Cotton_A_02842_CDS 81 137 76 137 PF13855.6 LRR_8 Repeat 6 61 61 33.3 3e-08 1 CL0022
Cotton_A_02842_CDS 221 281 221 281 PF13855.6 LRR_8 Repeat 1 61 61 30.2 2.7e-07 1 CL0022
Cotton_A_02842_CDS 579 617 571 617 PF13855.6 LRR_8 Repeat 23 61 61 27.7 1.7e-06 1 CL0022
Cotton_A_02842_CDS 760 930 755 942 PF00069.25 Pkinase Domain 6 168 264 120.0 1.1e-34 1 CL0016
Cotton_A_05174_CDS 130 211 130 211 PF01336.25 tRNA_anti-codon Domain 1 76 76 50.3 1.8e-13 1 CL0021
Cotton_A_05174_CDS 250 599 250 600 PF00152.20 tRNA-synt_2 Domain 1 313 314 279.3 3.5e-83 1 CL0040
Cotton_A_07091_CDS 44 646 44 647 PF00995.23 Sec1 Family 1 574 575 384.5 1.3e-114 1 No_clan
Cotton_A_09762_CDS 28 117 22 123 PF00651.31 BTB Domain 10 101 111 29.7 6.1e-07 1 CL0033
Cotton_A_09762_CDS 211 462 211 462 PF03000.14 NPH3 Family 1 258 258 309.7 1.7e-92 1 No_clan
Cotton_A_10137_CDS 51 98 50 98 PF00477.17 LEA_5 Family 62 109 109 76.1 2.6e-21 1 CL0385
Cotton_A_02487_CDS 125 354 125 354 PF00230.20 MIP Family 1 227 227 282.7 2.3e-84 1 No_clan
Cotton_A_09634_CDS 80 180 78 181 PF13947.6 GUB_WAK_bind Domain 3 105 106 60.7 1.8e-16 1 No_clan
Cotton_A_09634_CDS 265 301 262 303 PF14380.6 WAK_assoc Domain 66 102 104 28.5 1.9e-06 1 No_clan
Cotton_A_24660_CDS 31 67 30 67 PF00400.32 WD40 Repeat 2 38 38 14.9 0.038 1 CL0186
Cotton_A_24660_CDS 89 105 72 105 PF00400.32 WD40 Repeat 16 38 38 13.3 0.12 1 CL0186
Cotton_A_24660_CDS 114 150 112 151 PF00400.32 WD40 Repeat 3 37 38 20.6 0.00057 1 CL0186
Cotton_A_24591_CDS 61 134 61 134 PF02201.18 SWIB Domain 1 74 74 101.9 1.3e-29 1 No_clan
Cotton_A_11200_CDS 71 333 71 333 PF00685.27 Sulfotransfer_1 Domain 1 267 267 232.4 6.3e-69 1 CL0023
Cotton_A_19753_CDS 109 420 109 420 PF00225.23 Kinesin Domain 1 333 333 347.5 6.4e-104 1 CL0023
Cotton_A_38342_CDS 121 232 108 233 PF00888.22 Cullin Family 206 315 618 76.8 1.4e-21 1 No_clan
Cotton_A_14786_CDS 146 213 145 214 PF07983.13 X8 Domain 2 75 76 76.8 1.6e-21 1 No_clan
Cotton_A_08131_CDS 1 71 1 71 PF09118.11 DUF1929 Domain 34 96 96 66.3 2.3e-18 1 CL0159
Cotton_A_23742_CDS 41 153 41 165 PF03435.18 Sacchrp_dh_NADP Family 1 116 130 71.0 1.1e-19 1 CL0063
Cotton_A_33565_CDS 82 136 82 136 PF01165.20 Ribosomal_S21 Family 1 55 55 68.6 2.8e-19 1 No_clan
Cotton_A_00971_CDS 19 123 16 126 PF01398.21 JAB Family 4 115 118 77.8 6.4e-22 1 CL0366
Cotton_A_00971_CDS 173 279 173 280 PF13012.6 MitMem_reg Family 1 111 112 74.4 8.7e-21 1 No_clan
Cotton_A_18469_CDS 138 253 137 258 PF02537.15 CRCB Family 2 92 95 56.3 2.9e-15 1 CL0184
Cotton_A_18469_CDS 329 445 328 447 PF02537.15 CRCB Family 2 93 95 62.2 4.3e-17 1 CL0184
Cotton_A_11042_CDS 119 380 119 380 PF00069.25 Pkinase Domain 1 264 264 194.3 2.4e-57 1 CL0016
Cotton_A_36418_CDS 136 409 136 409 PF11708.8 Slu7 Domain 1 269 269 319.1 2.8e-95 1 No_clan
Cotton_A_06116_CDS 51 515 50 515 PF11744.8 ALMT Family 2 469 469 578.3 1.2e-173 1 CL0307
Cotton_A_09822_CDS 67 134 67 138 PF00240.23 ubiquitin Domain 1 67 72 37.5 1.4e-09 1 CL0072
Cotton_A_25571_CDS 126 297 126 298 PF04144.13 SCAMP Family 1 173 174 180.9 2.6e-53 1 No_clan
Cotton_A_20169_CDS 327 580 292 580 PF04484.12 QWRF Family 47 300 300 320.9 1.1e-95 1 No_clan
Cotton_A_14432_CDS 2 174 1 174 PF01154.17 HMG_CoA_synt_N Domain 2 174 174 275.5 1.7e-82 1 CL0046
Cotton_A_14432_CDS 175 449 175 449 PF08540.10 HMG_CoA_synt_C Domain 1 280 280 383.8 5.4e-115 1 CL0046
Cotton_A_25279_CDS 31 211 30 211 PF00722.21 Glyco_hydro_16 Domain 2 177 177 204.3 9.9e-61 1 CL0004
Cotton_A_25279_CDS 243 286 241 286 PF06955.12 XET_C Family 3 47 47 68.3 3.6e-19 1 CL0004
Cotton_A_17294_CDS 106 256 106 256 PF05201.15 GlutR_N Domain 1 146 146 138.1 1.7e-40 1 No_clan
Cotton_A_17294_CDS 273 413 271 413 PF01488.20 Shikimate_DH Family 3 138 138 148.8 9.2e-44 1 CL0063
Cotton_A_17294_CDS 427 531 427 531 PF00745.20 GlutR_dimer Domain 1 97 97 101.7 2.3e-29 1 No_clan
Cotton_A_23397_CDS 121 222 121 223 PF02362.21 B3 Family 1 100 101 76.2 1.5e-21 1 CL0405
Cotton_A_20835_CDS 57 521 57 521 PF00171.22 Aldedh Family 1 462 462 409.5 1.4e-122 1 CL0099
Cotton_A_11337_CDS 38 92 35 93 PF02701.15 zf-Dof Family 4 58 59 111.0 2.1e-32 1 No_clan
Cotton_A_01023_CDS 41 210 41 211 PF00350.23 Dynamin_N Domain 1 167 168 164.1 2.9e-48 1 CL0023
Cotton_A_01023_CDS 220 437 220 443 PF01031.20 Dynamin_M Family 1 224 285 170.5 4.4e-50 1 No_clan
Cotton_A_11127_CDS 9 78 9 78 PF00076.22 RRM_1 Domain 1 70 70 75.5 2.1e-21 1 CL0221
Cotton_A_37703_CDS 47 174 43 175 PF00134.23 Cyclin_N Domain 5 126 127 97.7 4.1e-28 1 CL0065
Cotton_A_37703_CDS 177 279 177 308 PF02984.19 Cyclin_C Domain 1 98 119 50.6 1.8e-13 1 CL0065
Cotton_A_17901_CDS 9 44 8 52 PF00646.33 F-box Domain 2 37 48 22.2 9.2e-05 1 CL0271
Cotton_A_17901_CDS 358 401 356 401 PF08387.10 FBD Family 3 46 46 30.0 3.4e-07 1 No_clan
Cotton_A_00351_CDS 5 115 4 116 PF05056.12 DUF674 Family 2 115 449 119.5 1.7e-34 1 No_clan
Cotton_A_36030_CDS 317 362 293 364 PF06241.12 Castor_Poll_mid Family 55 102 104 45.9 4.2e-12 1 CL0582
Cotton_A_08912_CDS 6 316 5 358 PF06273.11 eIF-4B Family 2 300 502 194.1 5e-57 1 No_clan
Cotton_A_19844_CDS 20 69 19 70 PF00847.20 AP2 Domain 2 53 54 51.9 6.5e-14 1 CL0081
Cotton_A_17380_CDS 9 218 9 220 PF04654.12 DUF599 Family 1 208 210 265.9 2e-79 1 No_clan
Cotton_A_31632_CDS 181 265 181 266 PF00439.25 Bromodomain Domain 1 83 84 70.8 7.6e-20 1 No_clan
Cotton_A_31632_CDS 328 390 327 391 PF17035.5 BET Domain 2 63 64 61.5 6.2e-17 1 CL0665
Cotton_A_40038_CDS 46 103 42 103 PF13855.6 LRR_8 Repeat 5 61 61 39.0 4.9e-10 1 CL0022
Cotton_A_40038_CDS 116 175 115 175 PF13855.6 LRR_8 Repeat 2 61 61 30.6 2.1e-07 1 CL0022
Cotton_A_40038_CDS 213 233 213 235 PF00560.33 LRR_1 Repeat 1 21 23 11.3 0.43 1 CL0022
Cotton_A_40038_CDS 237 295 235 295 PF13855.6 LRR_8 Repeat 3 61 61 33.1 3.5e-08 1 CL0022
Cotton_A_40038_CDS 402 460 400 460 PF13855.6 LRR_8 Repeat 3 61 61 29.2 5.8e-07 1 CL0022
Cotton_A_26584_CDS 97 240 97 242 PF00730.25 HhH-GPD Domain 1 106 108 39.6 5.9e-10 1 CL0198
Cotton_A_11764_CDS 1 96 1 96 PF01199.18 Ribosomal_L34e Family 1 94 94 129.9 3.3e-38 1 No_clan
Cotton_A_12227_CDS 4 58 2 59 PF00403.26 HMA Domain 3 61 62 48.8 7.1e-13 1 No_clan
Cotton_A_31792_CDS 75 248 75 248 PF10602.9 RPN7 Family 1 174 174 202.6 3.7e-60 1 CL0020
Cotton_A_31792_CDS 264 366 263 367 PF01399.27 PCI Domain 2 104 105 54.9 1e-14 1 CL0123
Cotton_A_22648_CDS 3 180 1 200 PF00955.21 HCO3_cotransp Family 3 174 508 123.7 9.2e-36 1 CL0062
Cotton_A_22648_CDS 202 372 183 377 PF00955.21 HCO3_cotransp Family 246 411 508 93.4 1.4e-26 1 CL0062
Cotton_A_22648_CDS 460 550 456 551 PF00955.21 HCO3_cotransp Family 423 507 508 69.4 2.7e-19 1 CL0062
Cotton_A_36401_CDS 244 300 243 307 PF13432.6 TPR_16 Family 2 61 68 37.9 2e-09 1 CL0020
Cotton_A_04643_CDS 37 117 36 118 PF02298.17 Cu_bind_like Domain 2 83 84 73.4 1.1e-20 1 CL0026
Cotton_A_30755_CDS 30 90 29 92 PF13499.6 EF-hand_7 Domain 2 68 71 48.5 8.8e-13 1 CL0220
Cotton_A_30755_CDS 103 165 102 166 PF13499.6 EF-hand_7 Domain 2 70 71 44.9 1.2e-11 1 CL0220
Cotton_A_28806_CDS 2 37 2 55 PF03105.19 SPX Domain 1 36 384 49.6 5.4e-13 1 No_clan
Cotton_A_28806_CDS 75 337 60 338 PF03105.19 SPX Domain 162 383 384 181.1 6.3e-53 1 No_clan
Cotton_A_28806_CDS 428 761 427 761 PF03124.14 EXS Family 2 331 331 283.3 2.8e-84 1 CL0182
Cotton_A_16923_CDS 5 69 1 71 PF12213.8 Dpoe2NT Domain 5 70 73 22.0 0.00015 1 CL0671
Cotton_A_16923_CDS 293 499 293 503 PF04042.16 DNA_pol_E_B Family 1 206 211 163.2 5.3e-48 1 CL0163
Cotton_A_23363_CDS 6 245 5 245 PF00121.18 TIM Domain 2 243 243 290.0 1.2e-86 1 CL0036
Cotton_A_20855_CDS 112 379 110 402 PF05140.14 ResB Family 3 279 495 186.2 9.6e-55 1 No_clan
Cotton_A_20855_CDS 416 524 404 525 PF05140.14 ResB Family 390 494 495 48.7 4.7e-13 1 No_clan
Cotton_A_18313_CDS 64 385 60 388 PF12204.8 DUF3598 Domain 8 262 265 65.1 7e-18 1 CL0116
Cotton_A_38150_CDS 21 73 21 82 PF05758.12 Ycf1 Family 1 53 945 58.4 3.3e-16 1 No_clan
Cotton_A_33027_CDS 59 558 42 606 PF03999.12 MAP65_ASE1 Family 5 472 598 252.5 9.6e-75 1 No_clan
Cotton_A_12494_CDS 43 206 43 206 PF04833.15 COBRA Family 1 165 165 241.4 4.4e-72 1 No_clan
Cotton_A_20448_CDS 28 348 28 349 PF00332.18 Glyco_hydro_17 Domain 1 312 313 218.6 1.5e-64 1 CL0058
Cotton_A_20448_CDS 371 439 370 440 PF07983.13 X8 Domain 2 75 76 64.8 8.4e-18 1 No_clan
Cotton_A_17081_CDS 13 244 13 251 PF01370.21 Epimerase Family 1 231 241 101.4 5.4e-29 1 CL0063
Cotton_A_01340_CDS 5 102 5 103 PF03195.14 LOB Family 1 98 99 131.8 1e-38 1 No_clan
Cotton_A_05563_CDS 12 257 12 257 PF00696.28 AA_kinase Family 1 241 241 126.9 9.5e-37 1 No_clan
Cotton_A_06987_CDS 11 134 9 137 PF12681.7 Glyoxalase_2 Domain 3 115 118 39.8 3.7e-10 1 CL0104
Cotton_A_17484_CDS 166 215 166 215 PF13041.6 PPR_2 Repeat 1 50 50 41.7 9.8e-11 1 CL0020
Cotton_A_17484_CDS 236 285 236 285 PF13041.6 PPR_2 Repeat 1 50 50 63.2 1.9e-17 1 CL0020
Cotton_A_17484_CDS 341 390 341 390 PF13041.6 PPR_2 Repeat 1 50 50 53.9 1.5e-14 1 CL0020
Cotton_A_17484_CDS 442 474 442 475 PF12854.7 PPR_1 Repeat 1 33 34 35.4 6.4e-09 1 CL0020
Cotton_A_17484_CDS 478 509 477 510 PF12854.7 PPR_1 Repeat 2 33 34 31.5 1e-07 1 CL0020
Cotton_A_17484_CDS 517 564 516 565 PF13041.6 PPR_2 Repeat 2 49 50 48.5 7.4e-13 1 CL0020
Cotton_A_17484_CDS 586 635 586 635 PF13041.6 PPR_2 Repeat 1 50 50 67.7 7.5e-19 1 CL0020
Cotton_A_17484_CDS 705 734 704 734 PF01535.20 PPR Family 2 31 31 13.9 0.047 1 CL0020
Cotton_A_03541_CDS 11 173 10 174 PF00160.21 Pro_isomerase Domain 2 157 158 131.5 3.3e-38 1 CL0475
Cotton_A_40871_CDS 2 112 1 112 PF05183.12 RdRP Family 468 586 586 99.2 2.3e-28 1 No_clan
Cotton_A_10873_CDS 11 169 11 171 PF00071.22 Ras Domain 1 159 162 191.2 8.9e-57 1 CL0023
Cotton_A_24111_CDS 26 119 26 123 PF02882.19 THF_DHG_CYH_C Domain 1 92 160 104.5 3.2e-30 1 CL0063
Cotton_A_16236_CDS 10 95 9 96 PF03083.16 MtN3_slv Family 2 86 87 82.7 1.4e-23 1 CL0141
Cotton_A_16236_CDS 130 214 130 216 PF03083.16 MtN3_slv Family 1 85 87 94.7 2.6e-27 1 CL0141
Cotton_A_18408_CDS 8 120 7 125 PF11969.8 DcpS_C Family 2 108 114 85.8 2.7e-24 1 CL0265
Cotton_A_06027_CDS 523 567 523 567 PF11331.8 zinc_ribbon_12 Family 1 45 45 70.6 7e-20 1 CL0167
Cotton_A_18893_CDS 241 609 240 611 PF03081.15 Exo70 Family 2 374 376 418.6 2.2e-125 1 CL0295
Cotton_A_01460_CDS 29 528 29 529 PF00118.24 Cpn60_TCP1 Family 1 490 491 552.7 7e-166 1 No_clan
Cotton_A_05590_CDS 27 62 25 63 PF08263.12 LRRNT_2 Family 3 40 41 29.5 6.9e-07 1 No_clan
Cotton_A_05590_CDS 114 136 114 136 PF00560.33 LRR_1 Repeat 1 23 23 9.6 1.5 1 CL0022
Cotton_A_05590_CDS 520 578 519 578 PF13855.6 LRR_8 Repeat 2 61 61 31.8 8.9e-08 1 CL0022
Cotton_A_05590_CDS 688 959 685 962 PF00069.25 Pkinase Domain 4 260 264 164.4 3.3e-48 1 CL0016
Cotton_A_11327_CDS 12 100 8 103 PF00153.27 Mito_carr Family 6 94 97 73.5 9.9e-21 1 No_clan
Cotton_A_11327_CDS 116 201 109 204 PF00153.27 Mito_carr Family 11 93 97 60.8 8.9e-17 1 No_clan
Cotton_A_11327_CDS 222 304 216 307 PF00153.27 Mito_carr Family 9 94 97 63.2 1.6e-17 1 No_clan
Cotton_A_25064_CDS 42 106 42 106 PF05617.11 Prolamin_like Domain 1 71 71 69.0 3e-19 1 CL0482
Cotton_A_05001_CDS 29 84 28 84 PF00046.29 Homeodomain Domain 2 57 57 61.2 6.3e-17 1 CL0123
Cotton_A_38747_CDS 19 99 19 99 PF03134.19 TB2_DP1_HVA22 Family 1 77 77 70.1 1.1e-19 1 No_clan
Cotton_A_03972_CDS 2 135 1 135 PF00722.21 Glyco_hydro_16 Domain 48 177 177 167.5 2e-49 1 CL0004
Cotton_A_03972_CDS 157 198 152 198 PF06955.12 XET_C Family 6 47 47 61.1 6.3e-17 1 CL0004
Cotton_A_27568_CDS 200 353 199 353 PF02182.17 SAD_SRA Domain 2 157 157 163.0 4.3e-48 1 CL0178
Cotton_A_27568_CDS 382 480 381 480 PF05033.16 Pre-SET Family 2 109 109 73.5 2e-20 1 No_clan
Cotton_A_27568_CDS 499 625 499 625 PF00856.28 SET Family 1 169 169 80.8 1.5e-22 1 No_clan
Cotton_A_40141_CDS 11 257 10 258 PF05703.11 Auxin_canalis Family 2 255 256 207.2 4e-61 1 No_clan
Cotton_A_40141_CDS 277 377 277 378 PF08458.10 PH_2 Family 1 104 105 53.9 1.9e-14 1 CL0266
Cotton_A_18702_CDS 7 176 6 176 PF13967.6 RSN1_TM Family 2 156 156 168.4 9.3e-50 1 No_clan
Cotton_A_18702_CDS 197 359 197 359 PF14703.6 PHM7_cyt Domain 1 176 176 153.9 4.8e-45 1 CL0221
Cotton_A_18702_CDS 370 605 370 640 PF02714.15 RSN1_7TM Family 1 237 274 231.8 8.8e-69 1 CL0416
Cotton_A_06610_CDS 4 61 2 61 PF03868.15 Ribosomal_L6e_N Domain 3 60 60 57.9 9e-16 1 No_clan
Cotton_A_06610_CDS 126 233 126 233 PF01159.19 Ribosomal_L6e Family 1 111 111 136.2 6.2e-40 1 No_clan
Cotton_A_33819_CDS 23 536 22 537 PF09507.10 CDC27 Family 2 426 427 75.3 6.2e-21 1 CL0123
Cotton_A_17242_CDS 35 79 34 79 PF05051.13 COX17 Family 2 48 48 71.2 6.6e-20 1 CL0351
Cotton_A_21018_CDS 142 338 141 338 PF03924.13 CHASE Domain 2 188 188 118.6 3e-34 1 CL0165
Cotton_A_21018_CDS 426 491 426 491 PF00512.25 HisKA Domain 1 67 67 64.1 8.9e-18 1 CL0025
Cotton_A_21018_CDS 538 693 538 697 PF02518.26 HATPase_c Domain 1 108 112 99.6 1.4e-28 1 CL0025
Cotton_A_21018_CDS 873 944 873 949 PF00072.24 Response_reg Domain 1 72 112 56.0 3.8e-15 1 CL0304
Cotton_A_16190_CDS 89 371 89 373 PF14576.6 SEO_N Family 1 284 287 412.7 7e-124 1 No_clan
Cotton_A_16190_CDS 543 572 542 582 PF14577.6 SEO_C Family 2 31 232 31.5 1.1e-07 1 No_clan
Cotton_A_16190_CDS 597 803 583 803 PF14577.6 SEO_C Family 25 232 232 258.3 5.7e-77 1 No_clan
Cotton_A_06999_CDS 12 61 11 62 PF03939.13 Ribosomal_L23eN Family 2 50 51 67.6 8.1e-19 1 No_clan
Cotton_A_06999_CDS 71 133 70 143 PF00276.20 Ribosomal_L23 Family 2 76 86 52.3 5.4e-14 1 No_clan
Cotton_A_05886_CDS 41 149 40 151 PF00072.24 Response_reg Domain 2 110 112 63.5 1.8e-17 1 CL0304
Cotton_A_34357_CDS 18 42 18 44 PF05678.14 VQ Motif 2 26 28 37.0 1.7e-09 1 No_clan
Cotton_A_24948_CDS 103 425 88 426 PF00923.19 TAL_FSA Domain 14 286 287 264.0 1.6e-78 1 CL0036
Cotton_A_20221_CDS 3 89 1 90 PF03732.17 Retrotrans_gag Family 6 95 96 23.2 6.4e-05 1 CL0523
Cotton_A_37845_CDS 14 203 14 208 PF04185.14 Phosphoesterase Family 1 186 356 172.3 1.6e-50 1 CL0088
Cotton_A_00788_CDS 77 284 77 285 PF07859.13 Abhydrolase_3 Domain 1 210 211 142.5 1.6e-41 1 CL0028
Cotton_A_02198_CDS 8 72 7 75 PF01248.26 Ribosomal_L7Ae Domain 2 65 95 54.0 1e-14 1 CL0101
Cotton_A_02198_CDS 76 124 72 125 PF01248.26 Ribosomal_L7Ae Domain 50 94 95 22.7 5.8e-05 1 CL0101
Cotton_A_19332_CDS 26 344 26 344 PF00225.23 Kinesin Domain 1 333 333 321.5 5e-96 1 CL0023
Cotton_A_19332_CDS 778 937 778 938 PF11995.8 DUF3490 Family 1 160 161 239.3 1.6e-71 1 No_clan
Cotton_A_21086_CDS 90 175 87 177 PF12796.7 Ank_2 Repeat 15 81 83 41.6 1.4e-10 1 CL0465
Cotton_A_21086_CDS 227 328 223 351 PF13962.6 PGG Domain 5 103 116 44.8 9.1e-12 1 No_clan
Cotton_A_20535_CDS 58 436 48 437 PF03140.15 DUF247 Family 8 396 397 291.4 1.2e-86 1 No_clan
Cotton_A_39437_CDS 3 61 1 61 PF00076.22 RRM_1 Domain 12 70 70 35.7 5.7e-09 1 CL0221
Cotton_A_04493_CDS 59 87 58 88 PF01535.20 PPR Family 2 30 31 9.9 0.92 1 CL0020
Cotton_A_04493_CDS 96 122 93 123 PF01535.20 PPR Family 4 30 31 22.1 0.00012 1 CL0020
Cotton_A_04493_CDS 125 153 124 154 PF01535.20 PPR Family 2 30 31 14.2 0.039 1 CL0020
Cotton_A_04493_CDS 197 221 197 224 PF01535.20 PPR Family 4 28 31 13.3 0.076 1 CL0020
Cotton_A_04493_CDS 225 254 225 255 PF01535.20 PPR Family 1 30 31 17.1 0.0046 1 CL0020
Cotton_A_04493_CDS 328 353 326 354 PF01535.20 PPR Family 3 28 31 16.7 0.0062 1 CL0020
Cotton_A_04493_CDS 399 420 396 425 PF01535.20 PPR Family 4 25 31 16.4 0.0077 1 CL0020
Cotton_A_04493_CDS 425 469 424 472 PF13041.6 PPR_2 Repeat 2 46 50 42.8 4.4e-11 1 CL0020
Cotton_A_04493_CDS 497 525 497 526 PF01535.20 PPR Family 1 29 31 21.3 0.00021 1 CL0020
Cotton_A_04493_CDS 526 573 525 574 PF13041.6 PPR_2 Repeat 2 49 50 44.4 1.4e-11 1 CL0020
Cotton_A_04493_CDS 600 624 599 627 PF01535.20 PPR Family 2 26 31 10.2 0.71 1 CL0020
Cotton_A_04493_CDS 699 822 699 823 PF14432.6 DYW_deaminase Family 1 126 127 127.3 3.2e-37 1 CL0109
Cotton_A_15048_CDS 11 35 11 35 PF06943.12 zf-LSD1 Domain 1 25 25 41.9 6.6e-11 1 No_clan
Cotton_A_15048_CDS 50 73 50 74 PF06943.12 zf-LSD1 Domain 1 24 25 42.8 3.4e-11 1 No_clan
Cotton_A_15048_CDS 88 112 88 112 PF06943.12 zf-LSD1 Domain 1 25 25 49.6 2.5e-13 1 No_clan
Cotton_A_19013_CDS 41 85 36 87 PF07491.11 PPI_Ypi1 Family 14 58 60 74.6 4e-21 1 No_clan
Cotton_A_23248_CDS 160 474 159 475 PF04515.12 Choline_transpo Family 2 325 326 142.2 2.1e-41 1 No_clan
Cotton_A_36789_CDS 5 222 5 226 PF00009.27 GTP_EFTU Domain 1 190 194 182.8 5.1e-54 1 CL0023
Cotton_A_36789_CDS 248 313 248 315 PF03144.25 GTP_EFTU_D2 Domain 1 72 74 51.2 1.3e-13 1 CL0575
Cotton_A_36789_CDS 322 429 321 430 PF03143.17 GTP_EFTU_D3 Domain 2 111 112 133.0 5.3e-39 1 No_clan
Cotton_A_07025_CDS 152 201 152 201 PF00847.20 AP2 Domain 1 53 54 36.3 4.9e-09 1 CL0081
Cotton_A_07025_CDS 244 294 244 295 PF00847.20 AP2 Domain 1 53 54 34.5 1.7e-08 1 CL0081
Cotton_A_21120_CDS 24 97 22 100 PF09279.11 EF-hand_like Domain 10 80 86 25.2 1.8e-05 1 CL0220
Cotton_A_21120_CDS 110 252 110 253 PF00388.19 PI-PLC-X Family 1 144 145 166.5 2.7e-49 1 CL0384
Cotton_A_21120_CDS 355 441 331 441 PF00387.19 PI-PLC-Y Family 28 115 115 96.6 1.1e-27 1 CL0384
Cotton_A_21120_CDS 464 565 461 573 PF00168.30 C2 Domain 3 94 103 41.8 1e-10 1 CL0154
Cotton_A_06061_CDS 60 183 60 186 PF02705.16 K_trans Family 1 105 534 71.8 4.1e-20 1 CL0062
Cotton_A_06061_CDS 185 343 183 345 PF02705.16 K_trans Family 131 288 534 190.7 3.8e-56 1 CL0062
Cotton_A_17389_CDS 46 98 45 103 PF00403.26 HMA Domain 2 58 62 43.4 3.4e-11 1 No_clan
Cotton_A_17389_CDS 135 181 133 214 PF00403.26 HMA Domain 3 53 62 38.8 9.2e-10 1 No_clan
Cotton_A_11933_CDS 22 99 21 99 PF13334.6 DUF4094 Family 2 88 88 32.3 9.9e-08 1 No_clan
Cotton_A_11933_CDS 132 322 131 328 PF01762.21 Galactosyl_T Family 2 189 195 105.4 3.3e-30 1 CL0110
Cotton_A_20707_CDS 308 524 289 525 PF07714.17 Pkinase_Tyr Domain 50 258 259 60.2 1.9e-16 1 CL0016
Cotton_A_27308_CDS 3 213 3 214 PF00091.25 Tubulin Domain 1 196 197 226.6 3.1e-67 1 CL0566
Cotton_A_27308_CDS 263 392 263 393 PF03953.17 Tubulin_C Domain 1 125 126 171.8 6.3e-51 1 CL0442
Cotton_A_18575_CDS 151 278 150 280 PF01694.22 Rhomboid Family 2 148 150 107.7 5.2e-31 1 CL0207
Cotton_A_03186_CDS 63 257 62 261 PF01095.19 Pectinesterase Family 2 196 298 293.2 1.4e-87 1 CL0268
Cotton_A_03186_CDS 259 321 256 321 PF01095.19 Pectinesterase Family 228 291 298 73.6 1.1e-20 1 CL0268
Cotton_A_08155_CDS 37 213 37 213 PF00350.23 Dynamin_N Domain 1 168 168 187.0 2.7e-55 1 CL0023
Cotton_A_08155_CDS 222 488 222 496 PF01031.20 Dynamin_M Family 1 270 285 214.6 1.6e-63 1 No_clan
Cotton_A_08155_CDS 514 606 513 606 PF02212.18 GED Family 2 92 92 76.9 9.7e-22 1 No_clan
Cotton_A_33269_CDS 216 247 214 247 PF12854.7 PPR_1 Repeat 3 34 34 31.8 8.1e-08 1 CL0020
Cotton_A_33269_CDS 253 302 253 302 PF13041.6 PPR_2 Repeat 1 50 50 69.8 1.6e-19 1 CL0020
Cotton_A_33269_CDS 323 369 323 372 PF13041.6 PPR_2 Repeat 1 47 50 53.1 2.7e-14 1 CL0020
Cotton_A_33269_CDS 393 442 393 442 PF13041.6 PPR_2 Repeat 1 50 50 54.5 1e-14 1 CL0020
Cotton_A_33269_CDS 466 495 466 496 PF01535.20 PPR Family 1 30 31 21.1 0.00024 1 CL0020
Cotton_A_33269_CDS 499 547 498 547 PF13041.6 PPR_2 Repeat 2 50 50 54.3 1.1e-14 1 CL0020
Cotton_A_33269_CDS 568 616 568 617 PF13041.6 PPR_2 Repeat 1 49 50 50.8 1.4e-13 1 CL0020
Cotton_A_33269_CDS 634 666 634 667 PF12854.7 PPR_1 Repeat 1 33 34 32.8 3.9e-08 1 CL0020
Cotton_A_33269_CDS 673 722 673 722 PF13041.6 PPR_2 Repeat 1 50 50 70.7 8.5e-20 1 CL0020
Cotton_A_33269_CDS 739 771 739 772 PF12854.7 PPR_1 Repeat 1 33 34 43.3 2.1e-11 1 CL0020
Cotton_A_33269_CDS 781 805 778 806 PF12854.7 PPR_1 Repeat 9 33 34 32.0 7.3e-08 1 CL0020
Cotton_A_33269_CDS 816 860 816 861 PF13041.6 PPR_2 Repeat 5 49 50 50.1 2.3e-13 1 CL0020
Cotton_A_33269_CDS 942 996 940 998 PF13812.6 PPR_3 Repeat 3 57 63 20.5 0.00036 1 CL0020
Cotton_A_35484_CDS 197 411 197 413 PF07002.16 Copine Family 1 216 218 245.9 3e-73 1 CL0128
Cotton_A_21333_CDS 261 286 261 286 PF06507.13 Auxin_resp Family 58 83 83 26.5 5.8e-06 1 No_clan
Cotton_A_21333_CDS 640 731 618 737 PF02309.16 AUX_IAA Family 122 231 237 33.3 4.4e-08 1 CL0072
Cotton_A_39780_CDS 74 207 74 208 PF00578.21 AhpC-TSA Domain 1 123 124 140.5 2.5e-41 1 CL0172
Cotton_A_39780_CDS 228 262 228 264 PF10417.9 1-cysPrx_C Domain 1 38 40 40.7 1.5e-10 1 No_clan
Cotton_A_26823_CDS 3 95 1 96 PF03171.20 2OG-FeII_Oxy Domain 7 100 101 76.5 1.8e-21 1 CL0029
Cotton_A_14322_CDS 17 68 17 69 PF09713.10 A_thal_3526 Domain 1 52 53 92.3 1.6e-26 1 No_clan
Cotton_A_29209_CDS 61 292 57 293 PF04884.14 DUF647 Family 6 240 241 220.1 3.3e-65 1 No_clan
Cotton_A_10565_CDS 13 219 12 221 PF03070.16 TENA_THI-4 Family 2 207 210 141.5 3.1e-41 1 CL0230
Cotton_A_25969_CDS 13 198 12 199 PF00117.28 GATase Domain 2 189 190 109.4 1.9e-31 1 CL0014
Cotton_A_25969_CDS 436 525 434 525 PF00958.22 GMP_synt_C Domain 3 92 92 132.5 4.2e-39 1 No_clan
Cotton_A_07243_CDS 366 407 366 408 PF05182.13 Fip1 Motif 1 42 43 72.4 1.5e-20 1 No_clan
Cotton_A_19697_CDS 28 144 27 144 PF00903.25 Glyoxalase Domain 2 128 128 47.0 2.8e-12 1 CL0104
Cotton_A_32650_CDS 15 78 14 78 PF13499.6 EF-hand_7 Domain 2 71 71 59.2 4.1e-16 1 CL0220
Cotton_A_32650_CDS 89 151 88 151 PF13499.6 EF-hand_7 Domain 3 71 71 46.6 3.5e-12 1 CL0220
Cotton_A_19179_CDS 44 112 44 115 PF13456.6 RVT_3 Domain 1 69 124 34.9 1.1e-08 1 CL0219
Cotton_A_00723_CDS 103 131 83 131 PF03765.15 CRAL_TRIO_N Domain 27 54 54 28.7 1.1e-06 1 CL0214
Cotton_A_00723_CDS 155 321 154 321 PF00650.20 CRAL_TRIO Domain 2 159 159 118.0 3.1e-34 1 CL0512
Cotton_A_19601_CDS 16 102 16 103 PF01172.18 SBDS Family 1 87 88 101.6 1.8e-29 1 No_clan
Cotton_A_19601_CDS 110 227 109 228 PF09377.10 SBDS_C Domain 2 115 116 105.3 1.8e-30 1 CL0437
Cotton_A_05422_CDS 4 114 4 114 PF05773.22 RWD Domain 1 116 116 33.1 5.5e-08 1 CL0208
Cotton_A_36740_CDS 2 227 2 227 PF12481.8 DUF3700 Domain 1 228 228 359.5 6.2e-108 1 CL0052
Cotton_A_12095_CDS 307 353 306 354 PF13920.6 zf-C3HC4_3 Domain 3 49 50 54.0 1.1e-14 1 CL0229
Cotton_A_16273_CDS 8 26 5 27 PF11416.8 Syntaxin-5_N Family 4 22 23 27.2 1.6e-06 1 No_clan
Cotton_A_16273_CDS 286 337 285 337 PF05739.19 SNARE Family 2 53 53 58.2 5.8e-16 1 No_clan
Cotton_A_36707_CDS 27 76 26 77 PF00847.20 AP2 Domain 2 53 54 53.0 3e-14 1 CL0081
Cotton_A_36783_CDS 100 160 99 161 PF00226.31 DnaJ Domain 2 62 63 68.1 5.2e-19 1 CL0392
Cotton_A_02938_CDS 6 28 6 28 PF10584.9 Proteasome_A_N Domain 1 23 23 34.9 9e-09 1 CL0052
Cotton_A_02938_CDS 31 213 29 213 PF00227.26 Proteasome Domain 3 190 190 211.7 6.4e-63 1 CL0052
Cotton_A_24067_CDS 30 98 29 102 PF07524.13 Bromo_TP Domain 2 70 77 71.2 5.5e-20 1 CL0012
Cotton_A_24067_CDS 166 214 166 214 PF10406.9 TAF8_C Domain 1 49 49 74.8 5.7e-21 1 No_clan
Cotton_A_01007_CDS 46 175 46 175 PF07107.11 WI12 Domain 1 109 109 140.5 2e-41 1 CL0051
Cotton_A_38236_CDS 208 281 205 281 PF13424.6 TPR_12 Repeat 4 77 77 42.6 5.4e-11 1 CL0020
Cotton_A_38236_CDS 462 520 453 525 PF13424.6 TPR_12 Repeat 13 71 77 33.7 3.2e-08 1 CL0020
Cotton_A_29911_CDS 92 458 55 464 PF07690.16 MFS_1 Family 22 343 353 110.5 8e-32 1 CL0015
Cotton_A_07721_CDS 67 149 12 152 PF02519.14 Auxin_inducible Family 17 87 90 80.2 9.2e-23 1 No_clan
Cotton_A_01300_CDS 22 196 22 198 PF16661.5 Lactamase_B_6 Domain 1 191 193 185.1 8.9e-55 1 CL0381
Cotton_A_01300_CDS 237 360 237 360 PF10996.8 Beta-Casp Domain 1 110 110 69.3 3e-19 1 CL0023
Cotton_A_01300_CDS 529 579 529 599 PF07521.12 RMMBL Motif 1 51 62 36.9 2.6e-09 1 CL0398
Cotton_A_01300_CDS 640 732 635 732 PF13299.6 CPSF100_C Family 85 170 170 62.1 7.1e-17 1 No_clan
Cotton_A_20264_CDS 20 482 19 495 PF00067.22 p450 Domain 3 448 463 188.7 1.6e-55 1 No_clan
Cotton_A_29166_CDS 43 131 43 134 PF12796.7 Ank_2 Repeat 1 79 83 57.2 1.8e-15 1 CL0465
Cotton_A_29166_CDS 162 413 153 413 PF07714.17 Pkinase_Tyr Domain 15 259 259 183.6 4.1e-54 1 CL0016
Cotton_A_35209_CDS 37 83 12 84 PF06404.12 PSK Family 36 89 90 58.2 1.2e-15 1 No_clan
Cotton_A_07190_CDS 81 417 81 417 PF02190.16 LON_substr_bdg Family 1 208 208 145.0 2.7e-42 1 CL0178
Cotton_A_07190_CDS 422 512 420 522 PF03226.14 Yippee-Mis18 Domain 4 80 105 34.6 1.8e-08 1 CL0080
Cotton_A_16216_CDS 135 234 135 234 PF08414.10 NADPH_Ox Family 1 101 101 125.9 6.7e-37 1 CL0220
Cotton_A_16216_CDS 394 550 393 550 PF01794.19 Ferric_reduct Family 2 125 125 72.6 3e-20 1 CL0328
Cotton_A_16216_CDS 593 709 591 710 PF08022.12 FAD_binding_8 Domain 3 108 109 111.3 2.3e-32 1 CL0076
Cotton_A_16216_CDS 716 901 716 902 PF08030.12 NAD_binding_6 Domain 1 155 156 170.9 2.1e-50 1 CL0091
Cotton_A_10078_CDS 63 147 41 147 PF01058.22 Oxidored_q6 Family 43 131 131 81.8 3.7e-23 1 No_clan
Cotton_A_00705_CDS 45 79 41 79 PF00400.32 WD40 Repeat 5 38 38 21.5 0.00031 1 CL0186
Cotton_A_00705_CDS 84 121 83 121 PF00400.32 WD40 Repeat 2 38 38 33.3 5.6e-08 1 CL0186
Cotton_A_00705_CDS 126 163 125 163 PF00400.32 WD40 Repeat 2 38 38 31.8 1.7e-07 1 CL0186
Cotton_A_00705_CDS 198 231 195 232 PF00400.32 WD40 Repeat 5 37 38 20.5 0.00063 1 CL0186
Cotton_A_00705_CDS 241 276 238 276 PF00400.32 WD40 Repeat 4 38 38 24.5 3.5e-05 1 CL0186
Cotton_A_00705_CDS 340 767 337 768 PF04053.14 Coatomer_WDAD Family 4 444 445 439.5 1.6e-131 1 CL0186
Cotton_A_00705_CDS 814 1213 814 1213 PF06957.11 COPI_C Family 1 403 403 567.6 1.2e-170 1 CL0020
Cotton_A_32717_CDS 41 420 40 420 PF00155.21 Aminotran_1_2 Domain 2 363 363 342.7 2.6e-102 1 CL0061
Cotton_A_02254_CDS 187 362 187 363 PF00856.28 SET Family 1 168 169 61.0 1.7e-16 1 No_clan
Cotton_A_22982_CDS 5 30 3 32 PF18511.1 F-box_5 Domain 3 28 42 27.8 1.4e-06 1 CL0271
Cotton_A_38529_CDS 1 51 1 57 PF01486.17 K-box Family 32 82 93 54.9 7.4e-15 1 No_clan
Cotton_A_15309_CDS 52 243 51 246 PF00149.28 Metallophos Domain 2 201 204 122.6 3.1e-35 1 CL0163
Cotton_A_22123_CDS 90 117 90 119 PF08041.11 PetM Family 1 28 30 43.0 2.3e-11 1 No_clan
Cotton_A_07034_CDS 19 64 18 64 PF08263.12 LRRNT_2 Family 2 41 41 37.2 2.7e-09 1 No_clan
Cotton_A_07034_CDS 140 198 138 198 PF13855.6 LRR_8 Repeat 3 61 61 29.8 3.6e-07 1 CL0022
Cotton_A_07034_CDS 767 1039 765 1042 PF07714.17 Pkinase_Tyr Domain 5 256 259 101.3 5.1e-29 1 CL0016
Cotton_A_36191_CDS 1732 1763 1732 1763 PF15629.6 Perm-CXXC Family 1 32 32 62.1 4.2e-17 1 No_clan
Cotton_A_36191_CDS 1766 1866 1766 1867 PF15628.6 RRM_DME Family 1 101 102 183.6 6.5e-55 1 No_clan
Cotton_A_35940_CDS 1 56 1 57 PF00190.22 Cupin_1 Domain 95 150 151 48.7 5.7e-13 1 CL0029
Cotton_A_06165_CDS 1 345 1 345 PF03105.19 SPX Domain 1 384 384 250.6 4.9e-74 1 No_clan
Cotton_A_06165_CDS 434 770 434 770 PF03124.14 EXS Family 1 331 331 285.1 8e-85 1 CL0182
Cotton_A_11054_CDS 30 182 30 217 PF02902.19 Peptidase_C48 Domain 1 181 216 44.9 1.1e-11 1 CL0125
Cotton_A_13168_CDS 2 107 2 119 PF12624.7 Chorein_N Family 1 107 116 104.2 4.2e-30 1 No_clan
Cotton_A_13168_CDS 133 374 133 375 PF16908.5 VPS13 Family 1 235 236 227.2 2.4e-67 1 No_clan
Cotton_A_13168_CDS 561 782 558 784 PF16910.5 VPS13_mid_rpt Repeat 4 231 235 109.6 1.6e-31 1 No_clan
Cotton_A_13168_CDS 803 911 801 912 PF00169.29 PH Domain 3 104 105 30.5 4e-07 1 CL0266
Cotton_A_13168_CDS 1988 2138 1983 2149 PF06101.11 Vps62 Family 34 173 542 32.1 3.9e-08 1 No_clan
Cotton_A_13168_CDS 2216 2364 2192 2390 PF06101.11 Vps62 Family 32 185 542 33.8 1.2e-08 1 No_clan
Cotton_A_03641_CDS 32 99 25 99 PF15630.6 CENP-S Domain 9 76 76 62.0 5.2e-17 1 CL0012
Cotton_A_35499_CDS 10 36 10 36 PF08513.11 LisH Domain 1 27 27 30.5 2.3e-07 1 CL0561
Cotton_A_35499_CDS 488 515 477 515 PF00400.32 WD40 Repeat 12 38 38 21.1 0.00041 1 CL0186
Cotton_A_35499_CDS 525 557 519 557 PF00400.32 WD40 Repeat 7 38 38 24.5 3.4e-05 1 CL0186
Cotton_A_35499_CDS 598 629 593 629 PF00400.32 WD40 Repeat 7 38 38 23.9 5.2e-05 1 CL0186
Cotton_A_35499_CDS 682 712 675 712 PF00400.32 WD40 Repeat 9 38 38 14.5 0.048 1 CL0186
Cotton_A_08741_CDS 47 371 46 371 PF07992.14 Pyr_redox_2 Domain 2 294 294 240.2 2.7e-71 1 CL0063
Cotton_A_08741_CDS 390 499 390 499 PF02852.22 Pyr_redox_dim Domain 1 110 110 137.0 2.8e-40 1 CL0608
Cotton_A_19659_CDS 2 128 1 128 PF01545.21 Cation_efflux Family 107 199 199 46.3 3.9e-12 1 No_clan
Cotton_A_30232_CDS 264 328 262 331 PF04564.15 U-box Domain 5 69 73 49.2 4.5e-13 1 CL0229
Cotton_A_32046_CDS 92 160 82 161 PF14144.6 DOG1 Family 10 75 77 49.1 4.7e-13 1 No_clan
Cotton_A_23323_CDS 28 68 17 78 PF00276.20 Ribosomal_L23 Family 18 58 86 26.0 8.8e-06 1 No_clan
Cotton_A_20881_CDS 213 336 213 337 PF07227.11 PHD_Oberon Family 1 129 130 141.0 1.9e-41 1 CL0390
Cotton_A_20881_CDS 430 561 430 561 PF16312.5 Oberon_cc Family 1 129 129 169.7 2.6e-50 1 No_clan
Cotton_A_17754_CDS 33 460 31 462 PF00232.18 Glyco_hydro_1 Domain 3 447 453 453.0 8.2e-136 1 CL0058
Cotton_A_38512_CDS 11 29 10 33 PF13202.6 EF-hand_5 Domain 2 20 25 19.3 0.00054 1 CL0220
Cotton_A_38512_CDS 396 486 395 490 PF12763.7 EF-hand_4 Family 2 93 104 44.9 8.8e-12 1 CL0220
Cotton_A_40678_CDS 30 275 27 279 PF01151.18 ELO Family 4 246 250 111.7 3.9e-32 1 No_clan
Cotton_A_26124_CDS 33 110 33 110 PF05922.16 Inhibitor_I9 Domain 1 82 82 51.1 1.6e-13 1 CL0570
Cotton_A_26124_CDS 132 564 131 564 PF00082.22 Peptidase_S8 Domain 2 298 298 160.5 5.3e-47 1 No_clan
Cotton_A_26124_CDS 620 718 620 718 PF17766.1 fn3_6 Domain 1 99 99 88.2 3.2e-25 1 CL0159
Cotton_A_00307_CDS 23 170 22 170 PF01161.20 PBP Domain 2 132 132 98.3 4.1e-28 1 No_clan
Cotton_A_19198_CDS 7 56 6 57 PF00847.20 AP2 Domain 2 53 54 43.3 3.2e-11 1 CL0081
Cotton_A_20561_CDS 88 356 88 359 PF07082.11 DUF1350 Family 1 211 250 181.2 2e-53 1 CL0028
Cotton_A_20715_CDS 171 202 158 202 PF14570.6 zf-RING_4 Domain 17 48 48 29.5 4.7e-07 1 CL0229
Cotton_A_20715_CDS 398 1173 398 1175 PF03552.14 Cellulose_synt Family 1 720 722 1255.3 0 1 CL0110
Cotton_A_04614_CDS 56 174 55 175 PF01894.17 UPF0047 Family 2 114 115 131.4 1.6e-38 1 No_clan
Cotton_A_38285_CDS 10 56 10 57 PF00319.18 SRF-TF Domain 1 47 48 83.8 4e-24 1 No_clan
Cotton_A_16968_CDS 738 811 736 812 PF16135.5 Jas Family 3 75 76 72.0 3.4e-20 1 No_clan
Cotton_A_22284_CDS 167 352 164 374 PF00931.22 NB-ARC Domain 4 197 252 139.2 1.3e-40 1 CL0023
Cotton_A_17961_CDS 8 66 8 70 PF00076.22 RRM_1 Domain 1 66 70 32.6 5.2e-08 1 CL0221
Cotton_A_17961_CDS 85 153 85 154 PF00076.22 RRM_1 Domain 1 69 70 66.7 1.2e-18 1 CL0221
Cotton_A_01967_CDS 42 86 41 87 PF12937.7 F-box-like Domain 2 47 48 26.3 4.9e-06 1 CL0271
Cotton_A_01967_CDS 461 499 460 500 PF00514.23 Arm Repeat 2 40 41 26.0 6.4e-06 1 CL0020
Cotton_A_01967_CDS 502 543 501 545 PF00514.23 Arm Repeat 2 39 41 22.4 9.1e-05 1 CL0020
Cotton_A_01967_CDS 556 587 546 587 PF00514.23 Arm Repeat 11 41 41 24.9 1.4e-05 1 CL0020
Cotton_A_01967_CDS 598 631 592 632 PF00514.23 Arm Repeat 7 40 41 34.9 9.9e-09 1 CL0020
Cotton_A_01967_CDS 633 675 633 676 PF00514.23 Arm Repeat 1 40 41 24.2 2.4e-05 1 CL0020
Cotton_A_01967_CDS 682 716 677 717 PF00514.23 Arm Repeat 6 40 41 30.5 2.4e-07 1 CL0020
Cotton_A_01363_CDS 69 116 67 117 PF00010.26 HLH Domain 3 50 53 35.6 6.6e-09 1 No_clan
Cotton_A_11180_CDS 307 583 303 585 PF03016.15 Exostosin Family 5 298 300 193.2 5.6e-57 1 No_clan
Cotton_A_05772_CDS 104 259 104 259 PF00005.27 ABC_tran Domain 1 137 137 103.2 1.6e-29 1 CL0023
Cotton_A_05772_CDS 421 668 421 691 PF05212.12 DUF707 Family 1 267 296 367.8 3.8e-110 1 No_clan
Cotton_A_31919_CDS 32 115 31 116 PF17855.1 MCM_lid Domain 2 86 87 82.0 3e-23 1 CL0671
Cotton_A_40914_CDS 190 487 183 490 PF02386.16 TrkH Family 126 444 502 80.4 9.7e-23 1 CL0030
Cotton_A_39507_CDS 64 283 64 284 PF01738.18 DLH Domain 1 216 217 189.8 4.5e-56 1 CL0028
Cotton_A_05102_CDS 21 227 16 227 PF00141.23 peroxidase Domain 3 229 229 155.3 2e-45 1 CL0617
Cotton_A_04064_CDS 79 198 66 204 PF00782.20 DSPc Domain 11 120 133 55.8 4e-15 1 CL0031
Cotton_A_36336_CDS 82 249 80 249 PF05042.13 Caleosin Family 3 170 170 242.0 3.2e-72 1 CL0220
Cotton_A_13085_CDS 20 74 2 74 PF01657.17 Stress-antifung Family 44 95 95 34.4 2.7e-08 1 No_clan
Cotton_A_13085_CDS 100 187 89 188 PF01657.17 Stress-antifung Family 7 94 95 48.5 1.1e-12 1 No_clan
Cotton_A_13085_CDS 270 535 269 537 PF00069.25 Pkinase Domain 2 260 264 152.6 1.3e-44 1 CL0016
Cotton_A_33090_CDS 1 147 1 197 PF14009.6 DUF4228 Family 1 154 179 72.9 4.1e-20 1 No_clan
Cotton_A_07133_CDS 60 352 59 353 PF01095.19 Pectinesterase Family 2 297 298 206.2 4.4e-61 1 CL0268
Cotton_A_41242_CDS 1 100 1 101 PF00190.22 Cupin_1 Domain 48 150 151 88.6 3.1e-25 1 CL0029
Cotton_A_14774_CDS 1 96 1 104 PF01217.20 Clat_adaptor_s Domain 1 91 142 80.8 8.9e-23 1 CL0212
Cotton_A_14774_CDS 107 166 102 167 PF01217.20 Clat_adaptor_s Domain 82 141 142 72.3 3.6e-20 1 CL0212
Cotton_A_06316_CDS 16 93 15 94 PF07244.15 POTRA Domain 2 79 80 29.8 6.8e-07 1 CL0191
Cotton_A_06316_CDS 123 457 123 462 PF01103.23 Bac_surface_Ag Family 1 317 324 82.9 2.9e-23 1 CL0193
Cotton_A_31239_CDS 55 290 55 291 PF00561.20 Abhydrolase_1 Domain 1 256 257 75.5 5e-21 1 CL0028
Cotton_A_08768_CDS 76 171 75 171 PF08698.11 Fcf2 Family 2 96 96 123.1 4.5e-36 1 No_clan
Cotton_A_20092_CDS 12 67 10 70 PF05030.12 SSXT Family 3 58 62 76.5 9.1e-22 1 No_clan
Cotton_A_19152_CDS 35 498 35 503 PF00067.22 p450 Domain 1 457 463 306.1 4e-91 1 No_clan
Cotton_A_26259_CDS 92 178 91 178 PF13837.6 Myb_DNA-bind_4 Domain 2 90 90 73.1 1.8e-20 1 CL0123
Cotton_A_26259_CDS 491 578 490 578 PF13837.6 Myb_DNA-bind_4 Domain 2 90 90 80.6 8.5e-23 1 CL0123
Cotton_A_39216_CDS 27 68 26 68 PF08263.12 LRRNT_2 Family 3 41 41 26.9 4.3e-06 1 No_clan
Cotton_A_39216_CDS 242 264 242 264 PF00560.33 LRR_1 Repeat 1 23 23 10.5 0.82 1 CL0022
Cotton_A_39216_CDS 266 325 265 325 PF13855.6 LRR_8 Repeat 2 61 61 29.7 4e-07 1 CL0022
Cotton_A_39216_CDS 694 965 693 965 PF07714.17 Pkinase_Tyr Domain 2 259 259 147.5 4.1e-43 1 CL0016
Cotton_A_16507_CDS 29 76 29 78 PF04702.12 Vicilin_N Family 1 48 147 42.8 4.4e-11 1 No_clan
Cotton_A_16507_CDS 61 133 61 133 PF04702.12 Vicilin_N Family 77 147 147 62.7 3.2e-17 1 No_clan
Cotton_A_16507_CDS 182 298 150 300 PF00190.22 Cupin_1 Domain 36 149 151 37.9 1.3e-09 1 CL0029
Cotton_A_16507_CDS 346 520 346 526 PF00190.22 Cupin_1 Domain 1 145 151 93.5 9e-27 1 CL0029
Cotton_A_15328_CDS 50 166 50 167 PF14306.6 PUA_2 Domain 1 113 159 81.9 4e-23 1 CL0178
Cotton_A_09431_CDS 126 320 122 321 PF01435.18 Peptidase_M48 Domain 5 195 196 69.4 3.4e-19 1 CL0126
Cotton_A_36033_CDS 31 66 21 96 PF00248.21 Aldo_ket_red Domain 118 153 294 25.7 5.8e-06 1 No_clan
Cotton_A_36033_CDS 313 483 313 483 PF00270.29 DEAD Domain 1 176 176 165.7 8.3e-49 1 CL0023
Cotton_A_36033_CDS 520 628 519 628 PF00271.31 Helicase_C Family 2 111 111 114.4 3.2e-33 1 CL0023
Cotton_A_08128_CDS 17 146 17 146 PF02365.15 NAM Family 1 126 126 120.2 1e-34 1 No_clan
Cotton_A_07684_CDS 1 99 1 99 PF04618.12 HD-ZIP_N Domain 1 110 110 112.3 1.6e-32 1 No_clan
Cotton_A_07684_CDS 130 184 129 185 PF00046.29 Homeodomain Domain 2 56 57 58.4 4.5e-16 1 CL0123
Cotton_A_07684_CDS 186 220 186 221 PF02183.18 HALZ Coiled-coil 1 42 43 40.4 2.4e-10 1 No_clan
Cotton_A_01082_CDS 278 420 262 457 PF00201.18 UDPGT Family 270 390 499 94.4 6.9e-27 1 CL0113
Cotton_A_22432_CDS 21 158 13 160 PF01459.22 Porin_3 Family 40 180 270 66.8 2e-18 1 CL0193
Cotton_A_00219_CDS 44 214 44 217 PF08392.12 FAE1_CUT1_RppA Family 1 171 290 250.8 1.7e-74 1 CL0046
Cotton_A_02298_CDS 11 73 9 82 PF18306.1 LDcluster4 Family 4 65 157 28.4 1.1e-06 1 CL0349
Cotton_A_13191_CDS 34 112 34 113 PF05922.16 Inhibitor_I9 Domain 1 81 82 50.6 2.4e-13 1 CL0570
Cotton_A_13191_CDS 138 598 138 615 PF00082.22 Peptidase_S8 Domain 1 293 298 156.5 8.9e-46 1 No_clan
Cotton_A_13191_CDS 669 764 669 764 PF17766.1 fn3_6 Domain 1 99 99 94.8 2.8e-27 1 CL0159
Cotton_A_38038_CDS 53 103 53 104 PF00847.20 AP2 Domain 1 53 54 47.3 1.8e-12 1 CL0081
Cotton_A_08753_CDS 327 468 326 468 PF04146.15 YTH Domain 2 166 166 137.9 3.1e-40 1 CL0178
Cotton_A_13544_CDS 39 250 28 260 PF00139.19 Lectin_legB Domain 12 238 249 133.6 8.4e-39 1 CL0004
Cotton_A_08168_CDS 42 94 37 95 PF00403.26 HMA Domain 6 61 62 35.3 1.2e-08 1 No_clan
Cotton_A_35616_CDS 28 98 25 117 PF00564.24 PB1 Domain 5 73 84 55.5 3.9e-15 1 CL0072
Cotton_A_01176_CDS 55 183 54 183 PF04494.15 TFIID_NTD2 Family 2 130 130 146.6 4.5e-43 1 No_clan
Cotton_A_01176_CDS 342 373 336 373 PF00400.32 WD40 Repeat 7 38 38 16.5 0.011 1 CL0186
Cotton_A_01176_CDS 411 443 404 443 PF00400.32 WD40 Repeat 7 38 38 27.1 5.4e-06 1 CL0186
Cotton_A_01176_CDS 450 485 447 485 PF00400.32 WD40 Repeat 4 38 38 28.7 1.6e-06 1 CL0186
Cotton_A_01176_CDS 490 527 489 527 PF00400.32 WD40 Repeat 2 38 38 35.8 9.5e-09 1 CL0186
Cotton_A_01176_CDS 531 569 531 569 PF00400.32 WD40 Repeat 1 38 38 30.3 5.1e-07 1 CL0186
Cotton_A_01176_CDS 573 611 573 611 PF00400.32 WD40 Repeat 1 38 38 30.4 4.7e-07 1 CL0186
Cotton_A_14909_CDS 4 153 1 153 PF03007.16 WES_acyltransf Domain 109 264 264 40.5 2.6e-10 1 CL0149
Cotton_A_14909_CDS 206 351 206 352 PF06974.13 DUF1298 Family 1 144 145 118.7 2e-34 1 No_clan
Cotton_A_29927_CDS 273 303 265 303 PF00400.32 WD40 Repeat 9 38 38 25.4 1.7e-05 1 CL0186
Cotton_A_29311_CDS 142 255 117 256 PF01789.16 PsbP Domain 41 155 156 83.9 1.2e-23 1 CL0619
Cotton_A_05567_CDS 24 175 24 176 PF06521.11 PAR1 Family 1 155 156 236.2 1.2e-70 1 No_clan
Cotton_A_35464_CDS 60 164 60 172 PF14226.6 DIOX_N Family 1 115 118 77.1 1.8e-21 1 CL0029
Cotton_A_35464_CDS 215 310 211 310 PF03171.20 2OG-FeII_Oxy Domain 7 101 101 96.9 8.1e-28 1 CL0029
Cotton_A_34279_CDS 311 354 310 354 PF13639.6 zf-RING_2 Domain 2 44 44 31.3 1.9e-07 1 CL0229
Cotton_A_34279_CDS 404 450 404 451 PF00628.29 PHD Domain 1 51 52 35.2 8.5e-09 1 CL0390
Cotton_A_34563_CDS 87 131 86 131 PF13639.6 zf-RING_2 Domain 2 44 44 49.6 3.8e-13 1 CL0229
Cotton_A_00960_CDS 97 148 97 148 PF12906.7 RINGv Domain 1 48 48 34.0 2.4e-08 1 CL0229
Cotton_A_14334_CDS 4 299 1 299 PF03140.15 DUF247 Family 68 397 397 198.4 2.1e-58 1 No_clan
Cotton_A_38321_CDS 28 143 15 144 PF00828.19 Ribosomal_L27A Family 3 127 128 82.1 5.1e-23 1 CL0588
Cotton_A_17114_CDS 98 529 98 529 PF00854.21 PTR2 Family 1 395 395 402.5 1.7e-120 1 CL0015
Cotton_A_23465_CDS 98 128 98 128 PF01535.20 PPR Family 1 31 31 16.4 0.0079 1 CL0020
Cotton_A_23465_CDS 133 162 132 162 PF01535.20 PPR Family 2 31 31 10.3 0.71 1 CL0020
Cotton_A_23465_CDS 167 190 167 195 PF01535.20 PPR Family 1 24 31 10.8 0.48 1 CL0020
Cotton_A_23465_CDS 307 353 307 356 PF13041.6 PPR_2 Repeat 1 47 50 36.5 4.1e-09 1 CL0020
Cotton_A_00148_CDS 7 166 7 167 PF01554.18 MatE Family 1 160 161 123.8 5.1e-36 1 CL0222
Cotton_A_00148_CDS 214 346 213 352 PF01554.18 MatE Family 3 133 161 83.2 1.5e-23 1 CL0222
Cotton_A_17399_CDS 23 528 22 528 PF09507.10 CDC27 Family 2 426 427 91.4 8e-26 1 CL0123
Cotton_A_17740_CDS 33 174 32 177 PF10604.9 Polyketide_cyc2 Family 2 140 143 66.6 2.8e-18 1 CL0209
Cotton_A_38744_CDS 27 467 27 468 PF00450.22 Peptidase_S10 Domain 1 418 419 378.0 7.8e-113 1 CL0028
Cotton_A_00371_CDS 1 77 1 77 PF01439.18 Metallothio_2 Family 1 81 81 106.0 1.4e-30 1 No_clan
Cotton_A_33957_CDS 47 106 47 106 PF02704.14 GASA Family 1 60 60 79.6 1.4e-22 1 No_clan
Cotton_A_10287_CDS 797 1084 796 1084 PF00069.25 Pkinase Domain 2 264 264 216.5 4e-64 1 CL0016
Cotton_A_18045_CDS 43 189 42 189 PF04043.15 PMEI Domain 2 154 154 75.6 5.3e-21 1 No_clan
Cotton_A_18045_CDS 245 542 245 543 PF01095.19 Pectinesterase Family 1 297 298 408.9 7.8e-123 1 CL0268
Cotton_A_09074_CDS 9 56 8 56 PF01679.17 Pmp3 Family 3 49 49 62.0 4.6e-17 1 No_clan
Cotton_A_23832_CDS 29 70 28 71 PF08263.12 LRRNT_2 Family 2 40 41 36.4 4.6e-09 1 No_clan
Cotton_A_23832_CDS 122 182 121 182 PF13855.6 LRR_8 Repeat 2 61 61 32.3 6.3e-08 1 CL0022
Cotton_A_23832_CDS 331 597 328 599 PF00069.25 Pkinase Domain 4 260 264 105.6 2.8e-30 1 CL0016
Cotton_A_41310_CDS 10 260 9 264 PF00149.28 Metallophos Domain 2 200 204 54.9 1.6e-14 1 CL0163
Cotton_A_26598_CDS 77 115 77 119 PF03790.13 KNOX1 Family 1 39 43 66.6 1.1e-18 1 No_clan
Cotton_A_26598_CDS 129 175 128 175 PF03791.13 KNOX2 Family 2 48 48 78.1 2.5e-22 1 No_clan
Cotton_A_26598_CDS 200 221 200 221 PF03789.13 ELK Domain 1 22 22 38.4 8.9e-10 1 No_clan
Cotton_A_26598_CDS 240 279 240 279 PF05920.11 Homeobox_KN Family 1 40 40 60.8 8.4e-17 1 CL0123
Cotton_A_28641_CDS 32 56 31 57 PF13912.6 zf-C2H2_6 Domain 2 26 27 25.1 1.2e-05 1 CL0361
Cotton_A_13540_CDS 129 378 129 378 PF04788.12 DUF620 Family 1 243 243 414.8 9.8e-125 1 No_clan
Cotton_A_03850_CDS 28 113 27 114 PF12894.7 ANAPC4_WD40 Repeat 2 91 92 95.2 2.1e-27 1 CL0186
Cotton_A_03850_CDS 262 464 262 464 PF12896.7 ANAPC4 Domain 1 204 204 206.4 3.2e-61 1 No_clan
Cotton_A_34256_CDS 6 144 4 145 PF03018.14 Dirigent Family 3 147 148 180.1 2.1e-53 1 CL0650
Cotton_A_00543_CDS 18 242 18 250 PF09754.9 PAC2 Family 1 208 213 108.8 3.7e-31 1 CL0408
Cotton_A_04383_CDS 6 75 3 84 PF07468.11 Agglutinin Domain 4 74 153 25.1 1.7e-05 1 CL0066
Cotton_A_17373_CDS 88 174 87 174 PF13837.6 Myb_DNA-bind_4 Domain 2 90 90 74.0 9.4e-21 1 CL0123
Cotton_A_17373_CDS 529 616 528 616 PF13837.6 Myb_DNA-bind_4 Domain 2 90 90 82.2 2.6e-23 1 CL0123
Cotton_A_19756_CDS 216 249 216 251 PF00320.27 GATA Domain 1 34 36 57.3 8.2e-16 1 CL0167
Cotton_A_17490_CDS 362 551 352 552 PF05958.11 tRNA_U5-meth_tr Family 168 355 357 58.9 4.1e-16 1 CL0063
Cotton_A_31280_CDS 60 499 60 500 PF01490.18 Aa_trans Family 1 408 409 360.7 8.5e-108 1 CL0062
Cotton_A_17703_CDS 35 76 15 77 PF02179.16 BAG Family 31 74 75 25.3 1.5e-05 1 No_clan
Cotton_A_34887_CDS 19 93 18 160 PF00300.22 His_Phos_1 Domain 2 65 194 30.7 2.3e-07 1 CL0071
Cotton_A_10483_CDS 271 379 243 390 PF00201.18 UDPGT Family 277 383 499 74.5 7.2e-21 1 CL0113
Cotton_A_31586_CDS 35 101 35 104 PF00076.22 RRM_1 Domain 1 66 70 75.9 1.6e-21 1 CL0221
Cotton_A_00605_CDS 45 188 41 188 PF04043.15 PMEI Domain 5 154 154 80.2 2e-22 1 No_clan
Cotton_A_00605_CDS 242 540 242 543 PF01095.19 Pectinesterase Family 1 295 298 417.2 2.3e-125 1 CL0268
Cotton_A_25570_CDS 58 359 51 360 PF05212.12 DUF707 Family 8 295 296 454.4 1.6e-136 1 No_clan
Cotton_A_10327_CDS 20 708 20 709 PF05664.11 DUF810 Family 1 685 686 824.9 5.9e-248 1 No_clan
Cotton_A_14186_CDS 70 142 70 145 PF03061.22 4HBT Domain 1 75 79 43.8 2.5e-11 1 CL0050
Cotton_A_07085_CDS 1 68 1 69 PF06331.12 Tfb5 Family 1 67 68 92.4 1.3e-26 1 No_clan
Cotton_A_33948_CDS 63 159 47 159 PF03556.15 Cullin_binding Family 15 120 120 100.7 7e-29 1 CL0220
Cotton_A_07825_CDS 33 189 33 189 PF04862.12 DUF642 Domain 1 157 157 204.7 6.6e-61 1 CL0202
Cotton_A_07825_CDS 200 367 200 368 PF04862.12 DUF642 Domain 1 156 157 56.9 2e-15 1 CL0202
Cotton_A_23436_CDS 13 60 13 60 PF00249.31 Myb_DNA-binding Domain 1 46 46 56.4 2.4e-15 1 CL0123
Cotton_A_23436_CDS 66 111 66 111 PF00249.31 Myb_DNA-binding Domain 1 46 46 60.7 1.1e-16 1 CL0123
Cotton_A_31813_CDS 238 678 238 678 PF12899.7 Glyco_hydro_100 Domain 1 435 435 693.3 1e-208 1 CL0059
Cotton_A_11342_CDS 9 74 4 74 PF01190.17 Pollen_Ole_e_I Family 27 99 99 52.3 5.6e-14 1 CL0287
Cotton_A_06780_CDS 102 207 102 208 PF00636.26 Ribonuclease_3 Family 1 104 105 73.5 1.9e-20 1 CL0539
Cotton_A_06780_CDS 241 311 240 311 PF14709.7 DND1_DSRM Domain 3 79 80 29.6 6.1e-07 1 CL0196
Cotton_A_11622_CDS 50 167 50 171 PF00004.29 AAA Domain 1 128 132 56.5 3.9e-15 1 CL0023
Cotton_A_11622_CDS 236 321 236 321 PF08542.11 Rep_fac_C Domain 1 88 88 78.1 4.9e-22 1 CL0604
Cotton_A_14434_CDS 13 287 13 288 PF00732.19 GMC_oxred_N Domain 1 295 296 102.3 3.2e-29 1 CL0063
Cotton_A_14434_CDS 385 530 385 532 PF05199.13 GMC_oxred_C Domain 1 142 144 95.2 4.9e-27 1 No_clan
Cotton_A_22187_CDS 103 298 88 304 PF04616.14 Glyco_hydro_43 Family 20 222 288 68.4 6.3e-19 1 CL0143
Cotton_A_13167_CDS 83 131 80 132 PF04570.14 zf-FLZ Domain 5 53 54 89.1 9.2e-26 1 CL0175
Cotton_A_12051_CDS 90 296 90 298 PF13460.6 NAD_binding_10 Domain 1 182 184 115.4 2.7e-33 1 CL0063
Cotton_A_12899_CDS 40 114 39 115 PF05922.16 Inhibitor_I9 Domain 2 80 82 53.4 3e-14 1 CL0570
Cotton_A_12899_CDS 138 568 137 581 PF00082.22 Peptidase_S8 Domain 2 285 298 157.5 4.5e-46 1 No_clan
Cotton_A_12899_CDS 636 734 636 734 PF17766.1 fn3_6 Domain 1 99 99 90.8 4.9e-26 1 CL0159
Cotton_A_25051_CDS 125 164 120 165 PF00010.26 HLH Domain 10 52 53 30.7 2.2e-07 1 No_clan
Cotton_A_26114_CDS 33 109 33 110 PF05922.16 Inhibitor_I9 Domain 1 81 82 52.0 8.3e-14 1 CL0570
Cotton_A_26114_CDS 132 579 131 579 PF00082.22 Peptidase_S8 Domain 2 298 298 147.9 3.8e-43 1 No_clan
Cotton_A_25741_CDS 13 112 12 121 PF03321.13 GH3 Family 2 106 527 96.9 1.3e-27 1 CL0378
Cotton_A_25741_CDS 121 370 115 371 PF03321.13 GH3 Family 293 526 527 287.9 1.7e-85 1 CL0378
Cotton_A_37024_CDS 215 482 201 484 PF00150.18 Cellulase Domain 15 279 281 77.9 8.3e-22 1 CL0058
Cotton_A_06495_CDS 292 334 291 334 PF13639.6 zf-RING_2 Domain 2 44 44 43.5 2.8e-11 1 CL0229
Cotton_A_10965_CDS 73 149 73 149 PF16450.5 Prot_ATP_ID_OB Domain 1 57 57 64.7 5.4e-18 1 CL0021
Cotton_A_10965_CDS 207 339 207 340 PF00004.29 AAA Domain 1 131 132 145.1 1.6e-42 1 CL0023
Cotton_A_10965_CDS 362 406 362 406 PF17862.1 AAA_lid_3 Domain 1 45 45 51.8 5.3e-14 1 CL0671
Cotton_A_18855_CDS 27 489 27 500 PF02516.14 STT3 Family 1 456 488 330.6 1.8e-98 1 CL0111
Cotton_A_37220_CDS 1 39 1 39 PF03936.16 Terpene_synth_C Domain 229 267 267 41.2 1.2e-10 1 CL0613
Cotton_A_04124_CDS 52 81 52 83 PF00685.27 Sulfotransfer_1 Domain 1 30 267 27.2 2.5e-06 1 CL0023
Cotton_A_25205_CDS 24 91 19 91 PF02298.17 Cu_bind_like Domain 16 84 84 69.7 1.6e-19 1 CL0026
Cotton_A_04071_CDS 6 73 6 73 PF00366.20 Ribosomal_S17 Domain 1 68 68 102.6 8.9e-30 1 CL0021
Cotton_A_26025_CDS 99 272 99 276 PF01634.18 HisG Family 1 156 160 125.4 2e-36 1 CL0177
Cotton_A_26025_CDS 192 295 187 303 PF02719.15 Polysacc_synt_2 Family 116 223 294 22.7 4.7e-05 1 CL0063
Cotton_A_26025_CDS 280 364 280 365 PF08029.11 HisG_C Domain 1 72 73 61.4 6.7e-17 1 CL0089
Cotton_A_06826_CDS 22 69 22 69 PF00249.31 Myb_DNA-binding Domain 1 46 46 49.0 4.9e-13 1 CL0123
Cotton_A_06826_CDS 75 118 75 120 PF00249.31 Myb_DNA-binding Domain 1 44 46 45.6 5.8e-12 1 CL0123
Cotton_A_00493_CDS 126 220 123 220 PF00254.28 FKBP_C Domain 5 94 94 86.1 1.5e-24 1 CL0487
Cotton_A_28090_CDS 133 209 129 211 PF07732.15 Cu-oxidase_3 Domain 48 117 119 29.5 5.8e-07 1 CL0026
Cotton_A_28090_CDS 272 340 239 366 PF00394.22 Cu-oxidase Domain 60 127 159 24.1 3.2e-05 1 CL0026
Cotton_A_28090_CDS 418 567 392 568 PF07731.14 Cu-oxidase_2 Domain 23 134 137 52.2 4.9e-14 1 CL0026
Cotton_A_30688_CDS 141 416 140 418 PF03016.15 Exostosin Family 2 298 300 187.8 2.5e-55 1 No_clan
Cotton_A_03281_CDS 7 185 7 186 PF01294.18 Ribosomal_L13e Family 1 179 180 259.2 1.9e-77 1 No_clan
Cotton_A_02094_CDS 25 79 25 83 PF02320.16 UCR_hinge Family 1 59 66 59.4 3e-16 1 No_clan
Cotton_A_08394_CDS 24 94 24 95 PF00240.23 ubiquitin Domain 1 71 72 71.3 4e-20 1 CL0072
Cotton_A_10677_CDS 28 263 27 265 PF00262.18 Calreticulin Family 1 253 367 203.5 4.4e-60 1 CL0004
Cotton_A_10677_CDS 265 338 263 338 PF00262.18 Calreticulin Family 293 367 367 78.2 5.3e-22 1 CL0004
Cotton_A_29300_CDS 115 160 114 160 PF13041.6 PPR_2 Repeat 5 50 50 45.8 5.2e-12 1 CL0020
Cotton_A_29300_CDS 184 229 183 229 PF13041.6 PPR_2 Repeat 4 49 50 47.8 1.2e-12 1 CL0020
Cotton_A_29300_CDS 251 300 251 300 PF13041.6 PPR_2 Repeat 1 50 50 65.6 3.3e-18 1 CL0020
Cotton_A_29300_CDS 321 369 321 370 PF13041.6 PPR_2 Repeat 1 49 50 60.5 1.3e-16 1 CL0020
Cotton_A_29300_CDS 391 440 391 440 PF13041.6 PPR_2 Repeat 1 50 50 37.6 1.8e-09 1 CL0020
Cotton_A_29300_CDS 462 510 462 510 PF13041.6 PPR_2 Repeat 2 50 50 62.4 3.4e-17 1 CL0020
Cotton_A_29300_CDS 531 573 531 576 PF13041.6 PPR_2 Repeat 1 43 50 31.1 1.9e-07 1 CL0020
Cotton_A_26079_CDS 66 121 66 121 PF02045.15 CBFB_NFYA Family 1 56 56 94.0 6.1e-27 1 No_clan
Cotton_A_11187_CDS 76 106 76 106 PF01535.20 PPR Family 1 31 31 25.6 8.9e-06 1 CL0020
Cotton_A_11187_CDS 108 136 107 137 PF01535.20 PPR Family 2 30 31 30.1 3.4e-07 1 CL0020
Cotton_A_11187_CDS 166 199 166 199 PF13041.6 PPR_2 Repeat 1 34 50 33.0 5e-08 1 CL0020
Cotton_A_11187_CDS 200 230 200 230 PF01535.20 PPR Family 1 31 31 35.1 8.2e-09 1 CL0020
Cotton_A_11187_CDS 231 254 231 261 PF01535.20 PPR Family 1 24 31 18.8 0.0014 1 CL0020
Cotton_A_11187_CDS 262 306 259 308 PF13041.6 PPR_2 Repeat 4 48 50 31.8 1.2e-07 1 CL0020
Cotton_A_11187_CDS 335 357 332 361 PF01535.20 PPR Family 4 26 31 12.0 0.19 1 CL0020
Cotton_A_11187_CDS 362 407 360 409 PF13041.6 PPR_2 Repeat 3 48 50 47.2 1.8e-12 1 CL0020
Cotton_A_11187_CDS 435 459 434 461 PF01535.20 PPR Family 2 26 31 14.2 0.039 1 CL0020
Cotton_A_11187_CDS 502 530 501 530 PF01535.20 PPR Family 3 31 31 11.3 0.33 1 CL0020
Cotton_A_02219_CDS 157 198 156 199 PF06203.14 CCT Motif 2 43 44 64.2 8e-18 1 CL0281
Cotton_A_03985_CDS 10 57 10 57 PF00319.18 SRF-TF Domain 1 48 48 90.6 3e-26 1 No_clan
Cotton_A_03985_CDS 86 171 77 172 PF01486.17 K-box Family 7 92 93 92.4 1.5e-26 1 No_clan
Cotton_A_28278_CDS 46 129 46 135 PF01988.19 VIT1 Family 1 86 215 90.7 1.2e-25 1 No_clan
Cotton_A_39021_CDS 131 171 131 171 PF00097.25 zf-C3HC4 Domain 1 41 41 31.8 9.3e-08 1 CL0229
Cotton_A_27473_CDS 122 151 121 151 PF01535.20 PPR Family 2 31 31 14.4 0.034 1 CL0020
Cotton_A_27473_CDS 156 203 153 203 PF13041.6 PPR_2 Repeat 4 50 50 44.4 1.4e-11 1 CL0020
Cotton_A_27473_CDS 227 256 227 257 PF01535.20 PPR Family 1 30 31 23.8 3.3e-05 1 CL0020
Cotton_A_27473_CDS 260 308 260 309 PF13041.6 PPR_2 Repeat 1 49 50 43.2 3.4e-11 1 CL0020
Cotton_A_27473_CDS 330 379 330 379 PF13041.6 PPR_2 Repeat 1 50 50 50.0 2.5e-13 1 CL0020
Cotton_A_27473_CDS 402 447 400 464 PF13041.6 PPR_2 Repeat 3 48 50 38.1 1.3e-09 1 CL0020
Cotton_A_27473_CDS 472 531 471 531 PF06522.11 B12D Family 10 69 69 50.9 9.7e-14 1 No_clan
Cotton_A_20601_CDS 28 236 24 236 PF00230.20 MIP Family 6 227 227 184.6 2.2e-54 1 No_clan
Cotton_A_05028_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 57.7 9.9e-16 1 CL0123
Cotton_A_05028_CDS 67 112 67 112 PF00249.31 Myb_DNA-binding Domain 1 46 46 54.6 8.9e-15 1 CL0123
Cotton_A_23828_CDS 25 143 25 144 PF00072.24 Response_reg Domain 1 109 112 79.3 2.2e-22 1 CL0304
Cotton_A_16401_CDS 19 346 19 346 PF00225.23 Kinesin Domain 1 333 333 303.9 1.1e-90 1 CL0023
Cotton_A_08429_CDS 246 400 245 423 PF00069.25 Pkinase Domain 2 153 264 126.0 1.7e-36 1 CL0016
Cotton_A_35732_CDS 91 151 77 152 PF00078.27 RVT_1 Family 156 221 222 36.7 3.1e-09 1 CL0027
Cotton_A_35732_CDS 215 267 215 271 PF17919.1 RT_RNaseH_2 Domain 1 58 100 56.3 2.6e-15 1 CL0219
Cotton_A_35732_CDS 370 421 368 421 PF17921.1 Integrase_H2C2 Domain 3 52 58 58.6 4.8e-16 1 CL0361
Cotton_A_12219_CDS 18 439 14 439 PF03547.18 Mem_trans Family 3 387 387 265.0 7.1e-79 1 CL0064
Cotton_A_10740_CDS 36 270 36 296 PF01636.23 APH Family 1 209 240 66.5 3.3e-18 1 CL0016
Cotton_A_20528_CDS 43 140 43 141 PF03195.14 LOB Family 1 98 99 137.9 1.3e-40 1 No_clan
Cotton_A_08306_CDS 6 408 6 408 PF03348.15 Serinc Family 1 429 429 384.6 5.8e-115 1 No_clan
Cotton_A_16685_CDS 38 78 37 78 PF08263.12 LRRNT_2 Family 2 41 41 33.4 4.2e-08 1 No_clan
Cotton_A_16685_CDS 458 712 457 714 PF00069.25 Pkinase Domain 2 260 264 97.5 8.2e-28 1 CL0016
Cotton_A_02568_CDS 126 182 119 185 PF03460.17 NIR_SIR_ferr Repeat 8 65 69 55.9 2.8e-15 1 No_clan
Cotton_A_02568_CDS 220 398 218 398 PF01077.22 NIR_SIR Family 3 159 159 173.3 2.6e-51 1 No_clan
Cotton_A_02568_CDS 416 468 416 480 PF03460.17 NIR_SIR_ferr Repeat 1 56 69 43.9 1.5e-11 1 No_clan
Cotton_A_02568_CDS 494 632 490 636 PF01077.22 NIR_SIR Family 6 153 159 39.9 3e-10 1 No_clan
Cotton_A_14821_CDS 48 83 43 83 PF00249.31 Myb_DNA-binding Domain 13 46 46 31.0 2.1e-07 1 CL0123
Cotton_A_04009_CDS 126 240 104 256 PF02739.16 5_3_exonuc_N Domain 48 143 159 77.7 8.5e-22 1 CL0280
Cotton_A_04009_CDS 263 349 258 358 PF01367.20 5_3_exonuc Domain 7 87 97 50.1 3.2e-13 1 CL0464
Cotton_A_10143_CDS 5 438 3 444 PF02458.15 Transferase Family 3 427 434 244.8 1.4e-72 1 CL0149
Cotton_A_29951_CDS 217 297 217 310 PF16543.5 DFRP_C Domain 1 81 89 61.0 1.1e-16 1 No_clan
Cotton_A_36759_CDS 6 99 6 99 PF14368.6 LTP_2 Family 1 97 97 61.8 4.9e-17 1 CL0482
Cotton_A_29967_CDS 5 156 4 156 PF04949.13 Transcrip_act Family 2 154 154 240.9 4.9e-72 1 No_clan
Cotton_A_25984_CDS 5 93 4 109 PF00168.30 C2 Domain 2 87 103 62.0 5.3e-17 1 CL0154
Cotton_A_25984_CDS 277 378 275 380 PF00168.30 C2 Domain 3 101 103 58.8 5.1e-16 1 CL0154
Cotton_A_25984_CDS 439 543 439 545 PF00168.30 C2 Domain 1 101 103 67.0 1.4e-18 1 CL0154
Cotton_A_25984_CDS 601 711 601 711 PF00168.30 C2 Domain 1 103 103 75.5 3.2e-21 1 CL0154
Cotton_A_25984_CDS 856 1011 856 1011 PF08372.10 PRT_C Family 1 156 156 262.3 1.1e-78 1 CL0484
Cotton_A_19444_CDS 31 73 30 73 PF08263.12 LRRNT_2 Family 2 41 41 30.5 3.4e-07 1 No_clan
Cotton_A_19444_CDS 326 576 306 577 PF07714.17 Pkinase_Tyr Domain 27 258 259 88.4 4.7e-25 1 CL0016
Cotton_A_23240_CDS 34 172 27 175 PF00190.22 Cupin_1 Domain 8 148 151 146.5 4.3e-43 1 CL0029
Cotton_A_13667_CDS 16 142 16 142 PF02365.15 NAM Family 1 126 126 136.8 7.5e-40 1 No_clan
Cotton_A_03196_CDS 30 115 27 120 PF00153.27 Mito_carr Family 4 90 97 54.7 7.1e-15 1 No_clan
Cotton_A_03196_CDS 128 212 123 214 PF00153.27 Mito_carr Family 6 94 97 64.7 5.5e-18 1 No_clan
Cotton_A_03196_CDS 220 307 218 311 PF00153.27 Mito_carr Family 4 92 97 68.4 3.9e-19 1 No_clan
Cotton_A_20373_CDS 46 138 23 149 PF04618.12 HD-ZIP_N Domain 24 104 110 34.7 2e-08 1 No_clan
Cotton_A_20373_CDS 174 228 173 229 PF00046.29 Homeodomain Domain 2 56 57 55.6 3.4e-15 1 CL0123
Cotton_A_20373_CDS 230 264 230 265 PF02183.18 HALZ Coiled-coil 1 42 43 39.1 6.2e-10 1 No_clan
Cotton_A_37973_CDS 113 186 111 187 PF04422.13 FrhB_FdhB_N Family 3 77 78 85.6 1.8e-24 1 No_clan
Cotton_A_37973_CDS 195 306 194 306 PF04432.13 FrhB_FdhB_C Domain 2 95 155 45.1 8.6e-12 1 No_clan
Cotton_A_26964_CDS 94 137 93 137 PF13639.6 zf-RING_2 Domain 2 44 44 39.9 3.9e-10 1 CL0229
Cotton_A_03051_CDS 42 749 20 749 PF03030.16 H_PPase Family 21 650 650 830.4 1.2e-249 1 No_clan
Cotton_A_04884_CDS 4 85 2 86 PF00276.20 Ribosomal_L23 Family 3 84 86 68.0 6.8e-19 1 No_clan
Cotton_A_24586_CDS 60 254 60 255 PF04176.13 TIP41 Family 1 171 172 198.2 6.7e-59 1 No_clan
Cotton_A_16689_CDS 4 49 3 50 PF02268.16 TFIIA_gamma_N Domain 2 47 48 76.1 1.5e-21 1 No_clan
Cotton_A_21061_CDS 80 189 76 189 PF00164.25 Ribosom_S12_S23 Family 4 114 114 166.0 1.9e-49 1 CL0021
Cotton_A_10103_CDS 69 305 60 307 PF07714.17 Pkinase_Tyr Domain 14 257 259 100.7 8.1e-29 1 CL0016
Cotton_A_05161_CDS 126 369 124 370 PF00481.21 PP2C Family 3 257 258 199.9 5.5e-59 1 CL0238
Cotton_A_00974_CDS 27 439 15 450 PF00067.22 p450 Domain 22 448 463 296.6 3.1e-88 1 No_clan
Cotton_A_22741_CDS 24 176 24 180 PF01583.20 APS_kinase Domain 1 154 158 219.8 1.6e-65 1 CL0023
Cotton_A_18801_CDS 485 642 485 652 PF04548.16 AIG1 Domain 1 149 212 71.1 8e-20 1 CL0023
Cotton_A_18801_CDS 846 1109 845 1110 PF11886.8 TOC159_MAD Family 2 266 267 327.0 6.1e-98 1 No_clan
Cotton_A_32617_CDS 4 61 4 63 PF00076.22 RRM_1 Domain 1 62 70 60.3 1.2e-16 1 CL0221
Cotton_A_32617_CDS 89 104 88 105 PF00098.23 zf-CCHC Domain 2 17 18 32.2 7.3e-08 1 CL0511
Cotton_A_23272_CDS 96 143 95 144 PF13041.6 PPR_2 Repeat 2 49 50 31.9 1.1e-07 1 CL0020
Cotton_A_23272_CDS 199 228 199 229 PF01535.20 PPR Family 1 30 31 17.4 0.0036 1 CL0020
Cotton_A_23272_CDS 273 294 270 296 PF01535.20 PPR Family 4 25 31 11.3 0.33 1 CL0020
Cotton_A_23272_CDS 304 333 303 333 PF01535.20 PPR Family 2 31 31 13.4 0.069 1 CL0020
Cotton_A_23272_CDS 376 398 374 400 PF01535.20 PPR Family 4 26 31 16.2 0.0092 1 CL0020
Cotton_A_23272_CDS 401 449 401 450 PF13041.6 PPR_2 Repeat 1 49 50 32.8 5.9e-08 1 CL0020
Cotton_A_23272_CDS 477 500 475 503 PF01535.20 PPR Family 3 26 31 11.7 0.24 1 CL0020
Cotton_A_23272_CDS 575 698 575 698 PF14432.6 DYW_deaminase Family 1 127 127 114.7 2.4e-33 1 CL0109
Cotton_A_26096_CDS 22 129 21 130 PF13947.6 GUB_WAK_bind Domain 2 105 106 78.1 7.5e-22 1 No_clan
Cotton_A_26096_CDS 263 363 261 364 PF13947.6 GUB_WAK_bind Domain 3 105 106 76.4 2.5e-21 1 No_clan
Cotton_A_26096_CDS 583 855 583 859 PF00069.25 Pkinase Domain 1 258 264 174.5 2.7e-51 1 CL0016
Cotton_A_06213_CDS 54 103 53 103 PF00010.26 HLH Domain 2 53 53 48.8 4.8e-13 1 No_clan
Cotton_A_23410_CDS 88 250 88 261 PF00117.28 GATase Domain 1 154 190 97.3 9e-28 1 CL0014
Cotton_A_23410_CDS 288 329 254 332 PF00117.28 GATase Domain 144 186 190 29.9 4.2e-07 1 CL0014
Cotton_A_23410_CDS 491 641 487 641 PF04715.13 Anth_synt_I_N Family 7 142 142 70.0 2.4e-19 1 No_clan
Cotton_A_23410_CDS 695 953 695 953 PF00425.18 Chorismate_bind Family 1 258 258 302.9 2e-90 1 No_clan
Cotton_A_30195_CDS 15 285 15 285 PF06418.14 CTP_synth_N Domain 1 265 265 408.0 1.5e-122 1 CL0023
Cotton_A_30195_CDS 322 556 321 558 PF00117.28 GATase Domain 2 188 190 200.0 3e-59 1 CL0014
Cotton_A_23238_CDS 85 180 85 181 PF07052.11 Hep_59 Family 1 105 106 90.9 7.5e-26 1 No_clan
Cotton_A_03841_CDS 37 328 36 333 PF01301.19 Glyco_hydro_35 Domain 2 303 316 362.7 2.1e-108 1 CL0058
Cotton_A_21436_CDS 114 170 113 170 PF00831.23 Ribosomal_L29 Family 2 57 57 63.2 1.6e-17 1 CL0346
Cotton_A_22602_CDS 210 406 195 418 PF00931.22 NB-ARC Domain 15 211 252 112.5 1.8e-32 1 CL0023
Cotton_A_15836_CDS 46 429 43 434 PF00999.21 Na_H_Exchanger Family 4 378 381 91.3 5.4e-26 1 CL0064
Cotton_A_17764_CDS 26 283 26 283 PF04821.14 TIMELESS Family 1 275 276 205.8 7.7e-61 1 No_clan
Cotton_A_17764_CDS 704 1201 703 1202 PF05029.13 TIMELESS_C Family 2 526 566 160.2 1.1e-46 1 No_clan
Cotton_A_11627_CDS 29 118 29 118 PF00447.17 HSF_DNA-bind Domain 1 96 96 103.9 5.4e-30 1 CL0123
Cotton_A_16592_CDS 63 499 63 499 PF01474.16 DAHP_synth_2 Domain 1 437 437 652.3 2.8e-196 1 CL0036
Cotton_A_21325_CDS 15 533 14 539 PF01602.20 Adaptin_N Family 2 487 524 455.1 3e-136 1 CL0020
Cotton_A_27204_CDS 16 109 5 180 PF00069.25 Pkinase Domain 100 188 264 74.0 1.2e-20 1 CL0016
Cotton_A_00944_CDS 5 37 5 37 PF14369.6 zinc_ribbon_9 Domain 1 35 35 52.2 5.4e-14 1 CL0167
Cotton_A_00944_CDS 180 221 178 221 PF13639.6 zf-RING_2 Domain 3 44 44 43.0 4.3e-11 1 CL0229
Cotton_A_00944_CDS 244 330 244 358 PF06547.12 DUF1117 Family 1 94 113 102.4 2.1e-29 1 No_clan
Cotton_A_21161_CDS 32 142 32 142 PF05773.22 RWD Domain 1 116 116 55.2 7.6e-15 1 CL0208
Cotton_A_21604_CDS 130 212 130 212 PF04749.17 PLAC8 Family 1 99 99 77.0 1.7e-21 1 No_clan
Cotton_A_21711_CDS 57 115 57 118 PF02148.19 zf-UBP Domain 1 60 64 63.3 2e-17 1 CL0229
Cotton_A_06194_CDS 32 162 32 162 PF17808.1 fn3_PAP Domain 1 118 118 125.3 1.3e-36 1 CL0159
Cotton_A_40750_CDS 67 455 65 455 PF03514.14 GRAS Family 3 374 374 342.0 3.9e-102 1 CL0063
Cotton_A_31630_CDS 12 165 11 166 PF04970.13 LRAT Domain 2 126 127 119.7 9.5e-35 1 CL0125
Cotton_A_25606_CDS 39 179 38 180 PF14223.6 Retrotran_gag_2 Family 2 137 138 111.0 3.5e-32 1 CL0523
Cotton_A_08462_CDS 214 284 207 284 PF00544.19 Pec_lyase_C Domain 140 211 211 34.4 1.6e-08 1 CL0268
Cotton_A_38154_CDS 3 74 1 77 PF00361.20 Proton_antipo_M Family 43 111 293 49.9 2.6e-13 1 CL0425
Cotton_A_15970_CDS 28 84 28 84 PF11961.8 DUF3475 Family 1 57 57 84.4 4.2e-24 1 No_clan
Cotton_A_15970_CDS 421 512 421 512 PF05003.12 DUF668 Family 1 89 89 112.2 1.2e-32 1 No_clan
Cotton_A_29303_CDS 21 102 21 108 PF16561.5 AMPK1_CBM Family 1 79 85 90.4 6.2e-26 1 CL0369
Cotton_A_29303_CDS 351 393 347 398 PF00571.28 CBS Domain 10 52 57 26.5 6.5e-06 1 No_clan
Cotton_A_29303_CDS 431 477 421 478 PF00571.28 CBS Domain 11 56 57 33.1 5.8e-08 1 No_clan
Cotton_A_06510_CDS 32 204 25 204 PF01105.24 EMP24_GP25L Domain 8 182 182 109.0 2.6e-31 1 CL0521
Cotton_A_39526_CDS 37 167 32 173 PF00544.19 Pec_lyase_C Domain 50 178 211 46.1 4.2e-12 1 CL0268
Cotton_A_00484_CDS 40 272 39 275 PF00194.21 Carb_anhydrase Domain 2 251 254 141.8 2.6e-41 1 No_clan
Cotton_A_09278_CDS 22 562 21 562 PF06101.11 Vps62 Family 2 542 542 891.0 2.2e-268 1 No_clan
Cotton_A_03170_CDS 43 316 39 316 PF07714.17 Pkinase_Tyr Domain 5 259 259 158.2 2.2e-46 1 CL0016
Cotton_A_15217_CDS 94 163 62 163 PF01477.23 PLAT Domain 45 117 117 25.5 1.5e-05 1 CL0321
Cotton_A_15217_CDS 177 833 176 833 PF00305.19 Lipoxygenase Domain 2 674 674 913.9 6.1e-275 1 No_clan
Cotton_A_34937_CDS 76 226 71 227 PF00282.19 Pyridoxal_deC Domain 109 261 375 119.6 1.3e-34 1 CL0061
Cotton_A_40206_CDS 51 131 48 135 PF16203.5 ERCC3_RAD25_C Domain 37 116 247 111.5 3.8e-32 1 CL0023
Cotton_A_21055_CDS 1 60 1 60 PF09728.9 Taxilin Coiled-coil 249 308 308 50.6 1.5e-13 1 No_clan
Cotton_A_25349_CDS 59 133 58 134 PF03061.22 4HBT Domain 2 78 79 31.0 2.4e-07 1 CL0050
Cotton_A_37043_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 51.6 8.1e-14 1 CL0123
Cotton_A_37043_CDS 67 112 67 112 PF00249.31 Myb_DNA-binding Domain 1 46 46 55.7 4e-15 1 CL0123
Cotton_A_25198_CDS 8 73 4 77 PF01429.19 MBD Domain 5 73 77 45.2 5.7e-12 1 CL0081
Cotton_A_24150_CDS 56 110 53 111 PF13370.6 Fer4_13 Domain 4 57 58 29.1 1.1e-06 1 CL0344
Cotton_A_02781_CDS 38 347 30 347 PF00225.23 Kinesin Domain 36 333 333 285.6 4.3e-85 1 CL0023
Cotton_A_34004_CDS 49 87 47 88 PF08263.12 LRRNT_2 Family 3 40 41 37.2 2.7e-09 1 No_clan
Cotton_A_34004_CDS 189 203 187 205 PF13516.6 LRR_6 Repeat 3 17 24 12.0 0.17 1 CL0022
Cotton_A_34004_CDS 214 273 204 273 PF13855.6 LRR_8 Repeat 2 61 61 35.7 5.3e-09 1 CL0022
Cotton_A_34004_CDS 442 461 442 465 PF00560.33 LRR_1 Repeat 1 20 23 10.0 1.1 1 CL0022
Cotton_A_34004_CDS 504 562 502 562 PF13855.6 LRR_8 Repeat 3 61 61 28.5 9.6e-07 1 CL0022
Cotton_A_32089_CDS 205 223 205 223 PF02810.15 SEC-C Family 1 19 19 28.3 1.2e-06 1 No_clan
Cotton_A_31922_CDS 1 107 1 149 PF14009.6 DUF4228 Family 1 107 179 75.3 7.6e-21 1 No_clan
Cotton_A_36534_CDS 8 72 2 94 PF18052.1 Rx_N Domain 22 86 93 67.4 1e-18 1 No_clan
Cotton_A_03326_CDS 93 150 93 150 PF03106.15 WRKY Domain 1 59 59 91.7 2.4e-26 1 CL0274
Cotton_A_21714_CDS 199 451 199 451 PF03000.14 NPH3 Family 1 258 258 309.8 1.6e-92 1 No_clan
Cotton_A_10166_CDS 2 109 2 110 PF02362.21 B3 Family 1 100 101 97.0 4.8e-28 1 CL0405
Cotton_A_01712_CDS 55 99 53 100 PF00249.31 Myb_DNA-binding Domain 3 45 46 46.9 2.4e-12 1 CL0123
Cotton_A_28879_CDS 17 173 17 175 PF00071.22 Ras Domain 1 160 162 169.2 5.1e-50 1 CL0023
Cotton_A_01910_CDS 74 282 74 282 PF07847.12 PCO_ADO Family 1 201 201 243.9 9.7e-73 1 CL0029
Cotton_A_35715_CDS 20 60 19 60 PF00010.26 HLH Domain 15 53 53 24.5 1.9e-05 1 No_clan
Cotton_A_10841_CDS 52 99 48 100 PF13812.6 PPR_3 Repeat 14 61 63 17.3 0.0038 1 CL0020
Cotton_A_10841_CDS 153 200 152 201 PF13041.6 PPR_2 Repeat 2 48 50 39.0 6.9e-10 1 CL0020
Cotton_A_10841_CDS 228 255 228 255 PF01535.20 PPR Family 4 31 31 25.4 1.1e-05 1 CL0020
Cotton_A_10841_CDS 257 279 257 280 PF01535.20 PPR Family 2 24 31 16.3 0.0081 1 CL0020
Cotton_A_10841_CDS 285 333 284 333 PF13041.6 PPR_2 Repeat 2 50 50 39.3 5.6e-10 1 CL0020
Cotton_A_10841_CDS 360 385 360 386 PF01535.20 PPR Family 4 29 31 17.2 0.0043 1 CL0020
Cotton_A_10841_CDS 386 433 385 434 PF13041.6 PPR_2 Repeat 2 49 50 36.3 4.6e-09 1 CL0020
Cotton_A_10841_CDS 461 484 459 488 PF01535.20 PPR Family 3 26 31 13.2 0.079 1 CL0020
Cotton_A_10841_CDS 531 558 528 558 PF01535.20 PPR Family 4 31 31 10.9 0.44 1 CL0020
Cotton_A_00565_CDS 24 96 24 106 PF10950.8 Organ_specific Family 1 82 117 50.8 2.5e-13 1 No_clan
Cotton_A_17090_CDS 115 377 115 378 PF09353.10 DUF1995 Domain 1 196 197 173.0 7.7e-51 1 No_clan
Cotton_A_18914_CDS 86 141 85 141 PF17181.4 EPF Family 2 53 53 69.0 2.5e-19 1 No_clan
Cotton_A_30868_CDS 253 383 253 384 PF00781.24 DAGK_cat Family 1 125 126 101.0 3.4e-29 1 CL0240
Cotton_A_36296_CDS 18 45 17 45 PF03271.17 EB1 Family 12 41 41 37.6 1.9e-09 1 No_clan
Cotton_A_04111_CDS 53 126 50 144 PF12756.7 zf-C2H2_2 Family 2 71 101 30.1 4.7e-07 1 CL0361
Cotton_A_04111_CDS 306 421 306 421 PF13649.6 Methyltransf_25 Domain 1 97 97 34.7 2.1e-08 1 CL0063
Cotton_A_35093_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 57.2 1.4e-15 1 CL0123
Cotton_A_35093_CDS 67 112 67 112 PF00249.31 Myb_DNA-binding Domain 1 46 46 55.7 4.2e-15 1 CL0123
Cotton_A_06583_CDS 77 339 49 340 PF03009.17 GDPD Family 28 258 259 26.8 3.9e-06 1 CL0384
Cotton_A_06583_CDS 367 656 367 656 PF03009.17 GDPD Family 2 259 259 106.9 1.4e-30 1 CL0384
Cotton_A_24167_CDS 143 210 142 211 PF00403.26 HMA Domain 2 61 62 40.0 4.1e-10 1 No_clan
Cotton_A_24167_CDS 373 561 372 563 PF00122.20 E1-E2_ATPase Family 2 179 181 161.1 1.9e-47 1 No_clan
Cotton_A_24167_CDS 579 810 579 811 PF00702.26 Hydrolase Domain 1 209 210 137.7 6.5e-40 1 CL0137
Cotton_A_10485_CDS 40 157 34 158 PF04852.12 DUF640 Family 6 125 126 216.6 8.7e-65 1 No_clan
Cotton_A_18059_CDS 45 232 44 236 PF00335.20 Tetraspanin Family 69 227 229 46.3 4e-12 1 CL0347
Cotton_A_13454_CDS 13 251 13 251 PF13561.6 adh_short_C2 Domain 1 234 234 229.9 3e-68 1 CL0063
Cotton_A_36485_CDS 134 166 134 167 PF13181.6 TPR_8 Repeat 1 33 34 12.6 0.12 1 CL0020
Cotton_A_36485_CDS 168 199 168 199 PF00515.28 TPR_1 Repeat 1 32 34 34.9 8.3e-09 1 CL0020
Cotton_A_36485_CDS 230 263 230 263 PF00515.28 TPR_1 Repeat 1 34 34 33.2 2.9e-08 1 CL0020
Cotton_A_36485_CDS 273 312 271 312 PF13414.6 TPR_11 Repeat 3 42 42 42.0 5.3e-11 1 CL0020
Cotton_A_36485_CDS 352 380 350 380 PF00515.28 TPR_1 Repeat 4 32 34 31.6 8.9e-08 1 CL0020
Cotton_A_36485_CDS 390 431 390 431 PF13414.6 TPR_11 Repeat 1 42 42 31.0 1.4e-07 1 CL0020
Cotton_A_36485_CDS 548 702 548 713 PF13844.6 Glyco_transf_41 Family 1 156 471 247.3 2.2e-73 1 CL0113
Cotton_A_36485_CDS 714 908 704 908 PF13844.6 Glyco_transf_41 Family 278 471 471 254.1 1.9e-75 1 CL0113
Cotton_A_36487_CDS 182 242 182 242 PF13855.6 LRR_8 Repeat 1 61 61 27.8 1.5e-06 1 CL0022
Cotton_A_36487_CDS 488 753 483 755 PF00069.25 Pkinase Domain 6 260 264 163.1 8e-48 1 CL0016
Cotton_A_12573_CDS 16 110 15 110 PF12776.7 Myb_DNA-bind_3 Domain 2 96 96 106.7 9.3e-31 1 CL0123
Cotton_A_12573_CDS 214 308 214 308 PF12776.7 Myb_DNA-bind_3 Domain 1 96 96 110.8 4.7e-32 1 CL0123
Cotton_A_29307_CDS 65 161 65 165 PF12776.7 Myb_DNA-bind_3 Domain 1 92 96 28.5 2.3e-06 1 CL0123
Cotton_A_28541_CDS 149 388 148 389 PF05637.12 Glyco_transf_34 Family 2 238 239 247.8 1.2e-73 1 CL0110
Cotton_A_13028_CDS 118 474 118 476 PF03759.13 PRONE Family 1 361 363 531.9 6.5e-160 1 No_clan
Cotton_A_15998_CDS 122 215 121 223 PF03168.13 LEA_2 Domain 2 91 101 36.6 5.1e-09 1 CL0159
Cotton_A_00755_CDS 310 540 308 601 PF00069.25 Pkinase Domain 3 212 264 149.2 1.4e-43 1 CL0016
Cotton_A_05929_CDS 265 351 257 351 PF12796.7 Ank_2 Repeat 15 83 83 28.3 2e-06 1 CL0465
Cotton_A_05929_CDS 539 607 539 611 PF00076.22 RRM_1 Domain 1 66 70 41.8 7.1e-11 1 CL0221
Cotton_A_05929_CDS 700 771 699 773 PF12872.7 OST-HTH Domain 2 69 72 38.5 7.6e-10 1 CL0123
Cotton_A_34828_CDS 204 368 203 370 PF02453.17 Reticulon Family 2 155 157 88.5 4.4e-25 1 CL0484
Cotton_A_11940_CDS 176 235 175 235 PF13855.6 LRR_8 Repeat 2 61 61 28.1 1.3e-06 1 CL0022
Cotton_A_15101_CDS 405 542 404 542 PF04146.15 YTH Domain 2 166 166 138.5 2e-40 1 CL0178
Cotton_A_12586_CDS 78 220 77 220 PF04043.15 PMEI Domain 3 154 154 65.6 6.2e-18 1 No_clan
Cotton_A_12646_CDS 1 139 1 182 PF14009.6 DUF4228 Family 1 157 179 59.4 5.8e-16 1 No_clan
Cotton_A_14638_CDS 103 369 100 370 PF07714.17 Pkinase_Tyr Domain 4 258 259 158.0 2.6e-46 1 CL0016
Cotton_A_02381_CDS 9 97 8 102 PF03226.14 Yippee-Mis18 Domain 3 87 105 48.5 7.9e-13 1 CL0080
Cotton_A_05801_CDS 27 93 25 93 PF07529.13 HSA Domain 3 70 71 55.6 5e-15 1 CL0023
Cotton_A_05801_CDS 535 809 529 810 PF00176.23 SNF2_N Family 51 349 350 232.4 6.1e-69 1 CL0023
Cotton_A_05801_CDS 1067 1175 1062 1175 PF00271.31 Helicase_C Family 6 111 111 70.1 1.9e-19 1 CL0023
Cotton_A_30730_CDS 14 128 14 128 PF02136.20 NTF2 Domain 1 120 120 83.0 2.4e-23 1 CL0051
Cotton_A_30730_CDS 316 373 316 385 PF00076.22 RRM_1 Domain 1 57 70 32.5 5.7e-08 1 CL0221
Cotton_A_22549_CDS 76 107 76 123 PF00786.28 PBD Domain 1 33 59 23.5 5.2e-05 1 No_clan
Cotton_A_22549_CDS 139 274 139 279 PF00620.27 RhoGAP Domain 1 146 152 72.4 3.5e-20 1 CL0409
Cotton_A_16836_CDS 1 485 1 485 PF05695.12 DUF825 Family 223 709 1486 1068.3 0 1 No_clan
Cotton_A_00060_CDS 4 67 4 67 PF00226.31 DnaJ Domain 1 63 63 87.9 3.6e-25 1 CL0392
Cotton_A_00060_CDS 177 331 173 331 PF01556.18 DnaJ_C Domain 5 148 148 138.9 1.3e-40 1 No_clan
Cotton_A_33017_CDS 127 200 127 220 PF10396.9 TrmE_N Family 1 59 115 29.1 9.6e-07 1 CL0289
Cotton_A_33017_CDS 198 503 196 504 PF12631.7 MnmE_helical Family 27 203 206 109.9 1.8e-31 1 No_clan
Cotton_A_33017_CDS 266 385 266 385 PF01926.23 MMR_HSR1 Family 1 114 114 81.2 5.8e-23 1 CL0023
Cotton_A_25604_CDS 45 204 45 205 PF01554.18 MatE Family 1 160 161 107.4 5.4e-31 1 CL0222
Cotton_A_25604_CDS 266 429 266 429 PF01554.18 MatE Family 1 161 161 99.2 1.8e-28 1 CL0222
Cotton_A_13823_CDS 75 128 74 128 PF14416.6 PMR5N Domain 2 53 53 83.4 9.8e-24 1 No_clan
Cotton_A_13823_CDS 129 417 129 418 PF13839.6 PC-Esterase Family 1 282 283 306.9 1.7e-91 1 CL0264
Cotton_A_33928_CDS 8 185 5 195 PF00378.20 ECH_1 Domain 4 174 251 67.2 1.3e-18 1 CL0127
Cotton_A_09109_CDS 4 45 2 48 PF00643.24 zf-B_box Domain 4 39 42 29.9 4.6e-07 1 No_clan
Cotton_A_09109_CDS 47 91 44 91 PF00643.24 zf-B_box Domain 4 42 42 29.7 5.3e-07 1 No_clan
Cotton_A_09109_CDS 275 317 275 318 PF06203.14 CCT Motif 1 43 44 61.9 4.2e-17 1 CL0281
Cotton_A_29615_CDS 17 88 17 89 PF04564.15 U-box Domain 1 72 73 70.8 8.1e-20 1 CL0229
Cotton_A_19320_CDS 23 296 22 297 PF00248.21 Aldo_ket_red Domain 2 293 294 165.3 1.7e-48 1 No_clan
Cotton_A_10125_CDS 8 348 8 348 PF07767.11 Nop53 Family 1 398 398 204.1 4.5e-60 1 No_clan
Cotton_A_09015_CDS 21 201 11 202 PF16213.5 DCB Family 14 177 178 79.6 2.1e-22 1 No_clan
Cotton_A_09015_CDS 297 351 295 356 PF12783.7 Sec7_N Domain 3 57 158 28.7 1e-06 1 No_clan
Cotton_A_17363_CDS 123 166 122 166 PF12906.7 RINGv Domain 3 48 48 37.8 1.5e-09 1 CL0229
Cotton_A_10167_CDS 74 127 73 128 PF14416.6 PMR5N Domain 2 52 53 68.1 6e-19 1 No_clan
Cotton_A_10167_CDS 129 410 129 411 PF13839.6 PC-Esterase Family 1 282 283 298.8 5.1e-89 1 CL0264
Cotton_A_30623_CDS 33 361 33 361 PF00657.22 Lipase_GDSL Family 1 200 200 98.0 6.9e-28 1 CL0264
Cotton_A_24667_CDS 93 195 93 195 PF08414.10 NADPH_Ox Family 1 101 101 114.9 1.8e-33 1 CL0220
Cotton_A_24667_CDS 354 508 353 510 PF01794.19 Ferric_reduct Family 2 123 125 70.5 1.3e-19 1 CL0328
Cotton_A_24667_CDS 554 684 551 685 PF08022.12 FAD_binding_8 Domain 4 108 109 94.9 2.8e-27 1 CL0076
Cotton_A_24667_CDS 691 855 691 856 PF08030.12 NAD_binding_6 Domain 1 155 156 157.5 2.7e-46 1 CL0091
Cotton_A_39655_CDS 69 390 68 390 PF03405.14 FA_desaturase_2 Domain 2 326 326 522.8 2.6e-157 1 CL0044
Cotton_A_30662_CDS 18 352 17 353 PF03214.13 RGP Family 2 341 342 593.0 1.7e-178 1 CL0110
Cotton_A_20056_CDS 10 98 10 102 PF02214.22 BTB_2 Domain 1 89 94 65.5 4.3e-18 1 CL0033
Cotton_A_20056_CDS 149 187 149 187 PF00805.22 Pentapeptide Repeat 2 40 40 32.5 4.8e-08 1 CL0505
Cotton_A_20056_CDS 218 256 218 256 PF00805.22 Pentapeptide Repeat 1 39 40 42.8 2.9e-11 1 CL0505
Cotton_A_01819_CDS 59 339 59 339 PF00069.25 Pkinase Domain 1 264 264 249.0 4.9e-74 1 CL0016
Cotton_A_01819_CDS 387 445 385 447 PF13499.6 EF-hand_7 Domain 4 68 71 32.4 9.2e-08 1 CL0220
Cotton_A_01819_CDS 457 519 456 519 PF13499.6 EF-hand_7 Domain 2 71 71 48.9 6.8e-13 1 CL0220
Cotton_A_22270_CDS 167 400 164 404 PF00931.22 NB-ARC Domain 4 248 252 152.5 1.2e-44 1 CL0023
Cotton_A_20845_CDS 98 271 96 272 PF00574.23 CLP_protease Domain 8 181 182 221.8 5.9e-66 1 CL0127
Cotton_A_26860_CDS 25 127 24 129 PF13947.6 GUB_WAK_bind Domain 2 103 106 65.8 5.1e-18 1 No_clan
Cotton_A_20534_CDS 53 430 41 431 PF03140.15 DUF247 Family 11 396 397 267.2 2.7e-79 1 No_clan
Cotton_A_01943_CDS 13 135 13 135 PF02365.15 NAM Family 1 126 126 106.8 1.4e-30 1 No_clan
Cotton_A_38237_CDS 66 559 63 559 PF04109.16 APG9 Family 4 479 479 562.5 9e-169 1 No_clan
Cotton_A_37882_CDS 18 181 18 182 PF03398.14 Ist1 Family 1 163 164 196.1 3.5e-58 1 No_clan
Cotton_A_01424_CDS 5 52 4 53 PF13041.6 PPR_2 Repeat 2 49 50 30.1 3.9e-07 1 CL0020
Cotton_A_01424_CDS 105 153 105 154 PF13041.6 PPR_2 Repeat 1 49 50 43.9 2e-11 1 CL0020
Cotton_A_01424_CDS 180 204 179 207 PF01535.20 PPR Family 2 26 31 17.4 0.0037 1 CL0020
Cotton_A_25561_CDS 15 104 15 104 PF00447.17 HSF_DNA-bind Domain 1 96 96 103.4 7.7e-30 1 CL0123
Cotton_A_13280_CDS 33 57 32 58 PF13912.6 zf-C2H2_6 Domain 2 26 27 32.8 4.9e-08 1 CL0361
Cotton_A_13280_CDS 93 114 92 115 PF13912.6 zf-C2H2_6 Domain 4 25 27 23.8 3.3e-05 1 CL0361
Cotton_A_11823_CDS 14 974 14 975 PF11145.8 DUF2921 Family 1 893 894 985.2 2.6e-296 1 No_clan
Cotton_A_15479_CDS 12 116 9 116 PF05915.12 DUF872 Family 4 115 115 103.7 6.3e-30 1 No_clan
Cotton_A_26722_CDS 30 152 30 155 PF01477.23 PLAT Domain 1 114 117 47.7 2e-12 1 CL0321
Cotton_A_32525_CDS 97 168 96 168 PF02823.16 ATP-synt_DE_N Domain 8 80 80 72.0 2.8e-20 1 No_clan
Cotton_A_32525_CDS 173 216 172 217 PF00401.20 ATP-synt_DE Domain 2 46 47 31.4 1.7e-07 1 No_clan
Cotton_A_20466_CDS 32 339 31 341 PF02309.16 AUX_IAA Family 2 234 237 212.7 6.9e-63 1 CL0072
Cotton_A_29286_CDS 2 155 1 179 PF08449.11 UAA Family 74 222 302 132.1 2.3e-38 1 CL0184
Cotton_A_30792_CDS 43 164 42 165 PF00300.22 His_Phos_1 Domain 70 193 194 91.6 5.2e-26 1 CL0071
Cotton_A_29768_CDS 288 386 285 386 PF00168.30 C2 Domain 4 103 103 65.0 5.9e-18 1 CL0154
Cotton_A_09218_CDS 18 97 11 98 PF16457.5 PH_12 Domain 33 133 134 29.8 7.1e-07 1 CL0266
Cotton_A_09218_CDS 289 337 288 337 PF00415.18 RCC1 Repeat 2 50 50 38.8 1e-09 1 CL0186
Cotton_A_25744_CDS 8 54 2 54 PF00035.26 dsrm Domain 21 67 67 26.8 6.3e-06 1 CL0196
Cotton_A_05595_CDS 95 399 93 401 PF00365.20 PFK Domain 3 282 284 208.1 1.6e-61 1 CL0240
Cotton_A_01347_CDS 114 133 113 134 PF18044.1 zf-CCCH_4 Domain 2 21 22 35.9 4.4e-09 1 CL0537
Cotton_A_01347_CDS 266 299 263 299 PF00400.32 WD40 Repeat 4 38 38 15.3 0.028 1 CL0186
Cotton_A_01347_CDS 304 338 303 339 PF00400.32 WD40 Repeat 2 37 38 17.7 0.0048 1 CL0186
Cotton_A_22807_CDS 40 81 37 82 PF03108.15 DBD_Tnp_Mut Family 5 46 67 25.8 7.7e-06 1 CL0274
Cotton_A_18007_CDS 44 90 41 91 PF00847.20 AP2 Domain 5 53 54 42.8 4.5e-11 1 CL0081
Cotton_A_36590_CDS 57 169 29 169 PF08613.11 Cyclin Family 47 161 161 113.2 1.5e-32 1 CL0065
Cotton_A_07587_CDS 242 270 242 272 PF02985.22 HEAT Repeat 1 29 31 21.6 0.00016 1 CL0020
Cotton_A_07587_CDS 361 459 360 461 PF13646.6 HEAT_2 Family 2 86 88 42.1 8.5e-11 1 CL0020
Cotton_A_16289_CDS 171 197 168 198 PF01535.20 PPR Family 4 30 31 17.0 0.0049 1 CL0020
Cotton_A_16289_CDS 200 251 200 251 PF13041.6 PPR_2 Repeat 1 50 50 51.7 7.3e-14 1 CL0020
Cotton_A_16289_CDS 283 331 283 331 PF13041.6 PPR_2 Repeat 1 49 50 67.9 6.1e-19 1 CL0020
Cotton_A_16289_CDS 358 386 357 387 PF01535.20 PPR Family 2 30 31 12.5 0.13 1 CL0020
Cotton_A_14998_CDS 25 124 23 125 PF00383.23 dCMP_cyt_deam_1 Family 3 100 101 85.7 1.6e-24 1 CL0109
Cotton_A_02977_CDS 20 112 18 112 PF03732.17 Retrotrans_gag Family 3 96 96 31.4 1.7e-07 1 CL0523
Cotton_A_03844_CDS 43 75 43 75 PF14364.6 DUF4408 Family 1 33 33 53.3 1.6e-14 1 No_clan
Cotton_A_03844_CDS 293 328 293 328 PF05553.11 DUF761 Family 1 36 36 58.5 3.3e-16 1 No_clan
Cotton_A_09426_CDS 17 229 17 261 PF14661.6 HAUS6_N Family 1 202 229 133.9 6.5e-39 1 No_clan
Cotton_A_38544_CDS 47 264 45 265 PF00149.28 Metallophos Domain 4 203 204 51.6 1.6e-13 1 CL0163
Cotton_A_12049_CDS 69 423 68 424 PF01237.18 Oxysterol_BP Family 2 372 373 344.1 8.4e-103 1 No_clan
Cotton_A_19578_CDS 290 786 290 794 PF03141.16 Methyltransf_29 Family 1 494 506 771.0 4.7e-232 1 CL0063
Cotton_A_21744_CDS 79 324 53 327 PF00481.21 PP2C Family 34 255 258 135.0 3.5e-39 1 CL0238
Cotton_A_25874_CDS 25 139 24 140 PF07732.15 Cu-oxidase_3 Domain 2 118 119 135.6 8e-40 1 CL0026
Cotton_A_25874_CDS 150 269 150 272 PF00394.22 Cu-oxidase Domain 1 127 159 112.8 1.6e-32 1 CL0026
Cotton_A_22784_CDS 14 71 14 71 PF08246.12 Inhibitor_I29 Domain 1 58 58 62.4 4e-17 1 No_clan
Cotton_A_22784_CDS 100 315 100 315 PF00112.23 Peptidase_C1 Domain 1 218 218 276.0 2.8e-82 1 CL0125
Cotton_A_21783_CDS 39 185 37 185 PF04043.15 PMEI Domain 3 154 154 69.7 3.3e-19 1 No_clan
Cotton_A_19235_CDS 34 105 34 108 PF01799.20 Fer2_2 Domain 1 72 76 97.7 2.8e-28 1 CL0486
Cotton_A_30806_CDS 169 213 165 214 PF12678.7 zf-rbx1 Domain 10 54 55 42.3 6.9e-11 1 CL0229
Cotton_A_19499_CDS 21 109 11 110 PF01486.17 K-box Family 4 92 93 94.5 3.2e-27 1 No_clan
Cotton_A_16690_CDS 74 379 73 380 PF06012.12 DUF908 Family 3 357 358 113.9 1e-32 1 No_clan
Cotton_A_16690_CDS 442 778 441 780 PF06025.12 DUF913 Family 3 364 368 206.0 8.3e-61 1 No_clan
Cotton_A_16690_CDS 1278 1315 1278 1315 PF00627.31 UBA Domain 1 37 37 36.5 3.3e-09 1 CL0214
Cotton_A_16690_CDS 2564 2590 2561 2594 PF14377.6 UBM Repeat 4 30 35 30.9 1.2e-07 1 No_clan
Cotton_A_16690_CDS 2605 2632 2600 2633 PF14377.6 UBM Repeat 6 34 35 42.5 2.6e-11 1 No_clan
Cotton_A_16690_CDS 2640 2671 2638 2672 PF14377.6 UBM Repeat 3 34 35 27.3 1.7e-06 1 No_clan
Cotton_A_16690_CDS 3361 3671 3360 3672 PF00632.25 HECT Domain 2 306 307 317.7 8.9e-95 1 CL0552
Cotton_A_39672_CDS 49 68 49 73 PF01535.20 PPR Family 4 23 31 10.1 0.79 1 CL0020
Cotton_A_39672_CDS 76 121 74 123 PF13041.6 PPR_2 Repeat 3 48 50 39.2 5.8e-10 1 CL0020
Cotton_A_13714_CDS 2 137 1 137 PF14111.6 DUF4283 Domain 10 145 145 111.7 2.1e-32 1 No_clan
Cotton_A_00192_CDS 51 374 51 374 PF12819.7 Malectin_like Domain 1 336 336 255.0 1e-75 1 CL0202
Cotton_A_10462_CDS 90 494 47 505 PF00067.22 p450 Domain 25 448 463 225.7 9.7e-67 1 No_clan
Cotton_A_16561_CDS 48 109 48 109 PF00226.31 DnaJ Domain 1 63 63 71.6 4.3e-20 1 CL0392
Cotton_A_33983_CDS 5 237 3 249 PF05056.12 DUF674 Family 4 234 449 181.1 3.4e-53 1 No_clan
Cotton_A_18011_CDS 5 106 4 113 PF00168.30 C2 Domain 2 96 103 54.6 1e-14 1 CL0154
Cotton_A_39477_CDS 209 475 208 475 PF07766.13 LETM1 Family 2 268 268 360.3 5.6e-108 1 No_clan
Cotton_A_39477_CDS 681 741 680 742 PF13499.6 EF-hand_7 Domain 2 68 71 31.1 2.5e-07 1 CL0220
Cotton_A_29866_CDS 121 287 121 291 PF00270.29 DEAD Domain 1 172 176 161.3 1.9e-47 1 CL0023
Cotton_A_29866_CDS 329 436 327 436 PF00271.31 Helicase_C Family 3 111 111 104.5 3.9e-30 1 CL0023
Cotton_A_31994_CDS 45 262 44 266 PF05686.12 Glyco_transf_90 Family 2 218 396 308.8 5.3e-92 1 CL0113
Cotton_A_31994_CDS 272 381 268 382 PF05686.12 Glyco_transf_90 Family 286 395 396 125.0 3.5e-36 1 CL0113
Cotton_A_06881_CDS 28 274 25 277 PF01151.18 ELO Family 4 247 250 117.3 7.8e-34 1 No_clan
Cotton_A_04824_CDS 37 144 22 144 PF04885.13 Stig1 Family 35 139 139 103.1 1.7e-29 1 No_clan
Cotton_A_02104_CDS 81 318 71 318 PF07714.17 Pkinase_Tyr Domain 15 259 259 90.2 1.3e-25 1 CL0016
Cotton_A_23833_CDS 50 134 50 135 PF03330.18 DPBB_1 Domain 1 82 83 79.9 1.3e-22 1 CL0199
Cotton_A_23833_CDS 146 223 146 223 PF01357.21 Pollen_allerg_1 Domain 1 80 80 104.2 2.8e-30 1 CL0159
Cotton_A_25731_CDS 2 112 1 129 PF00892.20 EamA Family 18 126 137 30.0 5.1e-07 1 CL0184
Cotton_A_05653_CDS 18 107 18 107 PF07911.13 DUF1677 Family 1 89 89 131.4 1.2e-38 1 No_clan
Cotton_A_13669_CDS 15 139 15 139 PF02365.15 NAM Family 1 126 126 126.8 9.3e-37 1 No_clan
Cotton_A_21779_CDS 82 209 81 215 PF00160.21 Pro_isomerase Domain 2 137 158 95.6 3.4e-27 1 CL0475
Cotton_A_06801_CDS 5 141 5 142 PF00179.26 UQ_con Domain 1 139 140 179.8 2e-53 1 CL0208
Cotton_A_20199_CDS 1 141 1 187 PF14009.6 DUF4228 Family 1 154 179 66.4 4e-18 1 No_clan
Cotton_A_12481_CDS 5 140 5 141 PF13302.7 Acetyltransf_3 Domain 1 137 138 88.0 8.7e-25 1 CL0257
Cotton_A_00774_CDS 92 264 92 264 PF07816.11 DUF1645 Family 1 191 191 133.7 1.2e-38 1 No_clan
Cotton_A_07815_CDS 172 219 171 220 PF13041.6 PPR_2 Repeat 2 49 50 41.3 1.3e-10 1 CL0020
Cotton_A_07815_CDS 247 267 246 273 PF01535.20 PPR Family 4 24 31 15.8 0.012 1 CL0020
Cotton_A_07815_CDS 276 304 275 305 PF01535.20 PPR Family 2 30 31 23.9 3e-05 1 CL0020
Cotton_A_07815_CDS 310 340 310 340 PF01535.20 PPR Family 1 31 31 11.8 0.22 1 CL0020
Cotton_A_07815_CDS 445 568 445 569 PF14432.6 DYW_deaminase Family 1 126 127 128.6 1.2e-37 1 CL0109
Cotton_A_23624_CDS 8 60 3 65 PF06645.13 SPC12 Family 14 66 71 26.8 4e-06 1 No_clan
Cotton_A_22881_CDS 130 263 130 263 PF02915.17 Rubrerythrin Domain 1 137 137 143.2 6.2e-42 1 CL0044
Cotton_A_35902_CDS 1 92 1 93 PF14111.6 DUF4283 Domain 52 143 145 85.9 1.9e-24 1 No_clan
Cotton_A_14502_CDS 110 340 110 369 PF00069.25 Pkinase Domain 1 210 264 56.8 2.1e-15 1 CL0016
Cotton_A_22018_CDS 14 87 14 87 PF07765.12 KIP1 Family 1 74 74 126.4 3.5e-37 1 No_clan
Cotton_A_02516_CDS 41 201 41 201 PF01554.18 MatE Family 1 161 161 127.5 3.5e-37 1 CL0222
Cotton_A_02516_CDS 262 424 262 425 PF01554.18 MatE Family 1 160 161 93.4 1.1e-26 1 CL0222
Cotton_A_37283_CDS 31 188 31 200 PF01397.21 Terpene_synth Domain 1 176 192 200.0 2.8e-59 1 No_clan
Cotton_A_37283_CDS 199 343 199 351 PF03936.16 Terpene_synth_C Domain 1 146 267 197.8 2.1e-58 1 CL0613
Cotton_A_28995_CDS 63 233 62 264 PF13360.6 PQQ_2 Domain 2 129 237 36.1 4.8e-09 1 CL0186
Cotton_A_28995_CDS 270 464 262 464 PF13360.6 PQQ_2 Domain 86 237 237 35.7 6.7e-09 1 CL0186
Cotton_A_29195_CDS 185 355 149 363 PF00566.18 RabGAP-TBC Family 27 196 215 125.2 2.7e-36 1 No_clan
Cotton_A_29195_CDS 478 506 478 554 PF00786.28 PBD Domain 1 31 59 27.1 3.8e-06 1 No_clan
Cotton_A_19978_CDS 201 258 201 303 PF03647.13 Tmemb_14 Family 1 44 92 34.9 1.9e-08 1 No_clan
Cotton_A_07566_CDS 57 334 57 335 PF04674.12 Phi_1 Family 1 275 276 327.6 5.7e-98 1 No_clan
Cotton_A_39406_CDS 64 233 63 235 PF00213.18 OSCP Family 3 170 172 150.9 3.7e-44 1 CL0255
Cotton_A_03961_CDS 135 295 135 297 PF01764.25 Lipase_3 Family 1 140 142 128.7 1.4e-37 1 CL0028
Cotton_A_00996_CDS 11 108 11 109 PF03195.14 LOB Family 1 98 99 129.5 5.8e-38 1 No_clan
Cotton_A_38876_CDS 45 157 45 179 PF00561.20 Abhydrolase_1 Domain 1 116 257 63.9 1.7e-17 1 CL0028
Cotton_A_26279_CDS 3 121 3 123 PF16004.5 EFTUD2 Family 1 120 122 121.3 3.4e-35 1 No_clan
Cotton_A_26279_CDS 141 258 140 271 PF00009.27 GTP_EFTU Domain 3 116 194 113.3 1e-32 1 CL0023
Cotton_A_04626_CDS 1 50 1 56 PF00403.26 HMA Domain 7 54 62 41.9 1e-10 1 No_clan
Cotton_A_04626_CDS 94 140 92 162 PF00403.26 HMA Domain 2 49 62 41.3 1.5e-10 1 No_clan
Cotton_A_26289_CDS 13 56 7 58 PF05922.16 Inhibitor_I9 Domain 37 80 82 31.0 2.9e-07 1 CL0570
Cotton_A_26289_CDS 83 539 82 555 PF00082.22 Peptidase_S8 Domain 2 285 298 134.9 3.5e-39 1 No_clan
Cotton_A_26289_CDS 609 702 609 704 PF17766.1 fn3_6 Domain 1 97 99 92.3 1.6e-26 1 CL0159
Cotton_A_04920_CDS 91 401 91 401 PF02906.14 Fe_hyd_lg_C Domain 1 243 243 255.2 6.4e-76 1 No_clan
Cotton_A_04920_CDS 432 464 417 465 PF02256.17 Fe_hyd_SSU Domain 23 55 56 38.3 1e-09 1 No_clan
Cotton_A_20449_CDS 102 414 99 416 PF02475.16 Met_10 Family 4 199 199 219.6 3.3e-65 1 CL0063
Cotton_A_40659_CDS 19 147 18 149 PF00722.21 Glyco_hydro_16 Domain 2 125 177 136.7 5.6e-40 1 CL0004
Cotton_A_34835_CDS 335 602 333 603 PF07714.17 Pkinase_Tyr Domain 4 258 259 152.3 1.4e-44 1 CL0016
Cotton_A_24762_CDS 1 111 1 115 PF08284.11 RVP_2 Domain 21 131 136 102.0 2.1e-29 1 CL0129
Cotton_A_24762_CDS 112 262 108 263 PF00078.27 RVT_1 Family 15 221 222 97.9 6e-28 1 CL0027
Cotton_A_24096_CDS 60 186 46 190 PF02114.16 Phosducin Domain 86 216 265 64.7 6e-18 1 CL0172
Cotton_A_07120_CDS 18 113 6 113 PF11837.8 DUF3357 Family 12 109 109 61.0 1.3e-16 1 No_clan
Cotton_A_07120_CDS 121 439 121 439 PF00251.20 Glyco_hydro_32N Domain 1 305 305 348.6 3.6e-104 1 CL0143
Cotton_A_07120_CDS 442 633 442 633 PF08244.12 Glyco_hydro_32C Domain 1 158 158 103.4 1.1e-29 1 CL0004
Cotton_A_21390_CDS 9 140 1 142 PF00450.22 Peptidase_S10 Domain 188 304 419 30.3 2.9e-07 1 CL0028
Cotton_A_20091_CDS 19 55 19 57 PF02736.19 Myosin_N Domain 1 37 40 41.7 7.5e-11 1 CL0010
Cotton_A_20091_CDS 73 729 73 729 PF00063.21 Myosin_head Domain 1 677 677 853.1 1.3e-256 1 CL0023
Cotton_A_04437_CDS 246 369 246 384 PF06552.12 TOM20_plant Family 6 122 187 30.5 2.8e-07 1 CL0020
Cotton_A_13270_CDS 1 354 1 355 PF04185.14 Phosphoesterase Family 9 355 356 340.9 9.2e-102 1 CL0088
Cotton_A_34802_CDS 50 83 45 83 PF00400.32 WD40 Repeat 5 37 38 18.1 0.0037 1 CL0186
Cotton_A_34802_CDS 184 210 178 215 PF00400.32 WD40 Repeat 8 33 38 17.0 0.0083 1 CL0186
Cotton_A_34802_CDS 229 259 219 260 PF00400.32 WD40 Repeat 8 37 38 23.8 5.6e-05 1 CL0186
Cotton_A_34802_CDS 532 560 525 561 PF00400.32 WD40 Repeat 10 37 38 21.0 0.00045 1 CL0186
Cotton_A_22372_CDS 41 435 41 436 PF03140.15 DUF247 Family 1 396 397 306.7 2.8e-91 1 No_clan
Cotton_A_16785_CDS 37 194 37 197 PF01554.18 MatE Family 1 158 161 116.2 1.1e-33 1 CL0222
Cotton_A_31429_CDS 352 400 347 403 PF00571.28 CBS Domain 8 54 57 24.2 3.4e-05 1 No_clan
Cotton_A_16880_CDS 28 67 27 67 PF08263.12 LRRNT_2 Family 2 41 41 42.9 4.3e-11 1 No_clan
Cotton_A_16880_CDS 119 178 118 178 PF13855.6 LRR_8 Repeat 2 61 61 34.5 1.3e-08 1 CL0022
Cotton_A_16880_CDS 298 560 296 565 PF00069.25 Pkinase Domain 3 257 264 140.3 6.9e-41 1 CL0016
Cotton_A_23232_CDS 3 74 3 74 PF00240.23 ubiquitin Domain 1 72 72 116.6 3.1e-34 1 CL0072
Cotton_A_23232_CDS 102 147 102 147 PF01599.19 Ribosomal_S27 Domain 1 45 45 94.7 2.7e-27 1 CL0167
Cotton_A_01970_CDS 1 190 1 190 PF00827.17 Ribosomal_L15e Family 1 191 191 315.8 9.2e-95 1 CL0652
Cotton_A_00246_CDS 14 85 14 86 PF12265.8 CAF1C_H4-bd Family 1 66 67 79.3 1.8e-22 1 No_clan
Cotton_A_00246_CDS 163 196 155 196 PF00400.32 WD40 Repeat 7 38 38 13.4 0.11 1 CL0186
Cotton_A_00246_CDS 209 245 206 245 PF00400.32 WD40 Repeat 4 38 38 16.7 0.0097 1 CL0186
Cotton_A_00246_CDS 255 288 249 288 PF00400.32 WD40 Repeat 7 38 38 14.6 0.047 1 CL0186
Cotton_A_00246_CDS 295 332 293 332 PF00400.32 WD40 Repeat 3 38 38 25.9 1.2e-05 1 CL0186
Cotton_A_00246_CDS 355 390 352 391 PF00400.32 WD40 Repeat 4 37 38 19.6 0.0012 1 CL0186
Cotton_A_30354_CDS 18 56 12 57 PF14559.6 TPR_19 Domain 7 45 68 26.3 8e-06 1 CL0020
Cotton_A_30354_CDS 71 101 70 103 PF13181.6 TPR_8 Repeat 2 32 34 14.2 0.039 1 CL0020
Cotton_A_30354_CDS 163 238 162 238 PF04969.16 CS Domain 2 76 76 52.3 9e-14 1 CL0190
Cotton_A_30354_CDS 281 360 280 360 PF05002.15 SGS Domain 2 83 83 123.5 2.8e-36 1 No_clan
Cotton_A_11290_CDS 36 374 36 377 PF00657.22 Lipase_GDSL Family 1 197 200 37.2 2.9e-09 1 CL0264
Cotton_A_06008_CDS 43 131 42 161 PF05701.11 WEMBL Family 2 90 562 45.8 3.6e-12 1 No_clan
Cotton_A_06008_CDS 287 432 258 432 PF05701.11 WEMBL Family 415 562 562 51.2 8.4e-14 1 No_clan
Cotton_A_25192_CDS 17 103 5 103 PF00125.24 Histone Domain 45 131 131 69.7 2.9e-19 1 CL0012
Cotton_A_25192_CDS 104 133 104 134 PF16211.5 Histone_H2A_C Family 1 31 35 41.4 8.8e-11 1 No_clan
Cotton_A_11507_CDS 8 26 5 27 PF11416.8 Syntaxin-5_N Family 4 22 23 26.7 2.3e-06 1 No_clan
Cotton_A_11507_CDS 280 332 280 332 PF05739.19 SNARE Family 1 53 53 59.6 2.2e-16 1 No_clan
Cotton_A_03601_CDS 126 280 125 282 PF03981.12 Ubiq_cyt_C_chap Family 2 140 141 113.8 6.4e-33 1 No_clan
Cotton_A_05924_CDS 7 215 6 216 PF05023.14 Phytochelatin Domain 2 212 213 300.5 4.6e-90 1 CL0125
Cotton_A_05924_CDS 221 481 221 481 PF09328.10 Phytochelatin_C Family 1 261 261 327.5 5.3e-98 1 No_clan
Cotton_A_23598_CDS 168 223 167 224 PF00847.20 AP2 Domain 2 53 54 34.0 2.6e-08 1 CL0081
Cotton_A_23598_CDS 268 317 266 318 PF00847.20 AP2 Domain 3 53 54 37.0 2.9e-09 1 CL0081
Cotton_A_23860_CDS 92 233 90 239 PF01625.21 PMSR Family 3 146 153 205.3 5.4e-61 1 No_clan
Cotton_A_38016_CDS 30 209 29 210 PF00722.21 Glyco_hydro_16 Domain 2 176 177 207.4 1.1e-61 1 CL0004
Cotton_A_38016_CDS 245 289 243 289 PF06955.12 XET_C Family 2 47 47 76.8 7.9e-22 1 CL0004
Cotton_A_22192_CDS 5 70 5 70 PF10247.9 Romo1 Family 1 66 66 80.5 8.7e-23 1 CL0500
Cotton_A_39682_CDS 70 131 70 131 PF00226.31 DnaJ Domain 1 63 63 88.4 2.4e-25 1 CL0392
Cotton_A_39682_CDS 194 410 192 410 PF01556.18 DnaJ_C Domain 3 148 148 89.6 2.1e-25 1 No_clan
Cotton_A_39682_CDS 219 281 219 282 PF00684.19 DnaJ_CXXCXGXG Domain 1 65 67 36.7 4.1e-09 1 No_clan
Cotton_A_10568_CDS 15 126 15 138 PF00179.26 UQ_con Domain 1 112 140 73.3 1.5e-20 1 CL0208
Cotton_A_09541_CDS 62 474 62 475 PF05577.12 Peptidase_S28 Domain 1 433 434 254.1 2.3e-75 1 CL0028
Cotton_A_13696_CDS 37 78 36 78 PF08263.12 LRRNT_2 Family 2 41 41 37.0 3.1e-09 1 No_clan
Cotton_A_13696_CDS 244 259 243 263 PF13516.6 LRR_6 Repeat 2 17 24 11.2 0.31 1 CL0022
Cotton_A_13696_CDS 271 331 271 331 PF13855.6 LRR_8 Repeat 1 61 61 33.2 3.2e-08 1 CL0022
Cotton_A_13696_CDS 372 432 372 434 PF13855.6 LRR_8 Repeat 1 59 61 33.7 2.2e-08 1 CL0022
Cotton_A_13696_CDS 565 623 564 623 PF13855.6 LRR_8 Repeat 3 61 61 27.4 2.1e-06 1 CL0022
Cotton_A_40813_CDS 175 291 170 291 PF03004.14 Transposase_24 Family 7 132 142 50.4 2.4e-13 1 No_clan
Cotton_A_24515_CDS 48 100 29 100 PF11976.8 Rad60-SLD Family 18 71 72 28.8 7.8e-07 1 CL0072
Cotton_A_15614_CDS 77 230 56 234 PF16661.5 Lactamase_B_6 Domain 35 159 193 31.7 9.6e-08 1 CL0381
Cotton_A_15614_CDS 338 454 336 460 PF10996.8 Beta-Casp Domain 5 97 110 31.5 1.7e-07 1 CL0023
Cotton_A_14174_CDS 10 177 10 178 PF00071.22 Ras Domain 1 161 162 183.3 2.3e-54 1 CL0023
Cotton_A_12801_CDS 57 130 56 131 PF00717.23 Peptidase_S24 Domain 2 69 70 52.7 3.1e-14 1 CL0299
Cotton_A_21125_CDS 95 129 95 130 PF00023.30 Ank Repeat 1 31 32 18.6 0.0018 1 CL0465
Cotton_A_21125_CDS 255 275 255 276 PF18044.1 zf-CCCH_4 Domain 1 21 22 29.4 4.8e-07 1 CL0537
Cotton_A_31275_CDS 34 154 7 158 PF00082.22 Peptidase_S8 Domain 174 284 298 62.4 4.2e-17 1 No_clan
Cotton_A_05918_CDS 45 481 43 495 PF00067.22 p450 Domain 4 439 463 228.4 1.4e-67 1 No_clan
Cotton_A_19297_CDS 27 127 26 127 PF13947.6 GUB_WAK_bind Domain 2 106 106 79.0 3.8e-22 1 No_clan
Cotton_A_19297_CDS 210 261 193 262 PF14380.6 WAK_assoc Domain 51 103 104 33.4 5.9e-08 1 No_clan
Cotton_A_20585_CDS 70 329 41 332 PF12697.7 Abhydrolase_6 Domain 36 217 220 32.4 1.3e-07 1 CL0028
Cotton_A_20585_CDS 454 529 443 562 PF03982.13 DAGAT Family 119 197 297 29.8 2.8e-07 1 CL0228
Cotton_A_26604_CDS 72 133 72 133 PF02885.17 Glycos_trans_3N Domain 1 63 63 49.1 3.7e-13 1 No_clan
Cotton_A_26604_CDS 140 364 139 364 PF00591.21 Glycos_transf_3 Family 2 227 253 298.7 3.7e-89 1 No_clan
Cotton_A_17338_CDS 163 281 163 281 PF13640.6 2OG-FeII_Oxy_3 Domain 1 96 96 73.2 2.4e-20 1 CL0029
Cotton_A_18087_CDS 98 403 96 405 PF00365.20 PFK Domain 3 282 284 209.5 6.2e-62 1 CL0240
Cotton_A_22531_CDS 41 105 40 105 PF00808.23 CBFD_NFYB_HMF Domain 2 65 65 95.6 1.5e-27 1 CL0012
Cotton_A_06098_CDS 36 592 36 593 PF00995.23 Sec1 Family 1 574 575 376.3 4e-112 1 No_clan
Cotton_A_09313_CDS 227 284 220 290 PF14418.6 OHA Domain 10 66 77 27.5 2.1e-06 1 No_clan
Cotton_A_09313_CDS 349 404 344 406 PF12872.7 OST-HTH Domain 6 63 72 24.9 1.3e-05 1 CL0123
Cotton_A_28563_CDS 105 204 105 205 PF13905.6 Thioredoxin_8 Domain 1 94 95 98.0 3e-28 1 CL0172
Cotton_A_28563_CDS 252 296 250 296 PF03107.16 C1_2 Domain 3 47 47 26.1 7.6e-06 1 CL0006
Cotton_A_06590_CDS 178 228 177 229 PF05739.19 SNARE Family 2 52 53 45.7 4.8e-12 1 No_clan
Cotton_A_38780_CDS 10 89 9 121 PF14226.6 DIOX_N Family 2 78 118 44.8 1.9e-11 1 CL0029
Cotton_A_38780_CDS 166 261 158 263 PF03171.20 2OG-FeII_Oxy Domain 4 99 101 59.0 5e-16 1 CL0029
Cotton_A_06145_CDS 97 268 94 269 PF04063.14 DUF383 Family 4 189 190 119.6 1.3e-34 1 No_clan
Cotton_A_06145_CDS 274 326 274 329 PF04064.13 DUF384 Family 1 53 55 36.0 4.7e-09 1 No_clan
Cotton_A_15183_CDS 31 105 30 105 PF00498.26 FHA Family 2 69 69 38.1 1.4e-09 1 CL0357
Cotton_A_18071_CDS 27 236 26 237 PF01596.17 Methyltransf_3 Domain 2 211 212 294.5 3e-88 1 CL0063
Cotton_A_23783_CDS 33 119 33 157 PF13344.6 Hydrolase_6 Domain 1 80 101 53.7 1.7e-14 1 CL0137
Cotton_A_23783_CDS 224 279 223 309 PF13242.6 Hydrolase_like Domain 2 57 75 50.1 2.1e-13 1 CL0137
Cotton_A_22882_CDS 159 193 159 193 PF05553.11 DUF761 Family 2 36 36 57.8 5.4e-16 1 No_clan
Cotton_A_37258_CDS 33 140 32 140 PF13947.6 GUB_WAK_bind Domain 2 106 106 75.3 5.4e-21 1 No_clan
Cotton_A_37258_CDS 294 334 294 336 PF07645.15 EGF_CA Domain 1 40 42 35.7 7.5e-09 1 CL0001
Cotton_A_37258_CDS 421 686 421 690 PF00069.25 Pkinase Domain 1 258 264 164.2 3.6e-48 1 CL0016
Cotton_A_10318_CDS 123 142 122 142 PF00612.27 IQ Motif 2 21 21 25.6 5.9e-06 1 CL0220
Cotton_A_10318_CDS 148 162 145 163 PF00612.27 IQ Motif 5 19 21 17.1 0.0032 1 CL0220
Cotton_A_10318_CDS 291 380 260 389 PF13178.6 DUF4005 Family 19 85 93 55.5 7e-15 1 No_clan
Cotton_A_14868_CDS 30 203 29 209 PF03629.18 SASA Domain 2 167 226 232.3 5.3e-69 1 CL0264
Cotton_A_09417_CDS 141 188 137 188 PF04570.14 zf-FLZ Domain 6 54 54 80.9 3.4e-23 1 CL0175
Cotton_A_27616_CDS 225 419 225 443 PF04577.14 DUF563 Family 1 183 209 65.6 6.5e-18 1 No_clan
Cotton_A_07900_CDS 107 118 107 119 PF02178.19 AT_hook Motif 1 12 13 16.1 0.0073 1 No_clan
Cotton_A_07900_CDS 166 176 166 177 PF02178.19 AT_hook Motif 1 11 13 7.0 6.5 1 No_clan
Cotton_A_07900_CDS 192 306 192 308 PF03479.15 DUF296 Domain 1 105 107 99.3 1.4e-28 1 CL0615
Cotton_A_09919_CDS 95 331 95 338 PF01370.21 Epimerase Family 1 230 241 161.2 2.9e-47 1 CL0063
Cotton_A_30319_CDS 116 165 91 165 PF14138.6 COX16 Family 32 79 79 39.0 8.8e-10 1 No_clan
Cotton_A_23097_CDS 50 247 45 249 PF00664.23 ABC_membrane Family 6 199 274 136.0 1.9e-39 1 CL0241
Cotton_A_28844_CDS 8 436 4 437 PF02458.15 Transferase Family 5 433 434 237.3 2.6e-70 1 CL0149
Cotton_A_27806_CDS 11 133 11 133 PF02365.15 NAM Family 1 126 126 69.6 4.6e-19 1 No_clan
Cotton_A_04362_CDS 479 881 476 882 PF02181.23 FH2 Family 4 371 372 403.5 9.1e-121 1 No_clan
Cotton_A_37475_CDS 5 376 3 376 PF00022.19 Actin Family 3 407 407 496.3 5.2e-149 1 CL0108
Cotton_A_02416_CDS 151 433 90 441 PF00295.17 Glyco_hydro_28 Domain 52 320 325 137.3 5.8e-40 1 CL0268
Cotton_A_14287_CDS 26 489 24 490 PF00232.18 Glyco_hydro_1 Domain 3 452 453 577.3 1.7e-173 1 CL0058
Cotton_A_36453_CDS 59 317 59 317 PF00069.25 Pkinase Domain 1 264 264 259.6 2.8e-77 1 CL0016
Cotton_A_36453_CDS 365 424 363 425 PF13499.6 EF-hand_7 Domain 4 69 71 31.4 1.9e-07 1 CL0220
Cotton_A_36453_CDS 435 498 434 498 PF13499.6 EF-hand_7 Domain 2 71 71 52.8 3.9e-14 1 CL0220
Cotton_A_09164_CDS 167 438 166 438 PF00928.21 Adap_comp_sub Family 2 264 264 291.8 4.3e-87 1 CL0448
Cotton_A_06273_CDS 5 91 5 124 PF18052.1 Rx_N Domain 1 84 93 83.2 1.2e-23 1 No_clan
Cotton_A_05829_CDS 31 105 30 122 PF04828.14 GFA Domain 2 80 93 28.3 1.7e-06 1 CL0080
Cotton_A_22711_CDS 45 288 45 288 PF13561.6 adh_short_C2 Domain 1 234 234 200.0 4e-59 1 CL0063
Cotton_A_03446_CDS 23 103 23 103 PF03810.19 IBN_N Family 1 74 74 44.3 1.2e-11 1 CL0020
Cotton_A_03446_CDS 382 437 382 437 PF13513.6 HEAT_EZ Repeat 1 55 55 37.4 2.6e-09 1 CL0020
Cotton_A_20183_CDS 4 72 4 72 PF16205.5 Ribosomal_S17_N Family 1 69 69 107.4 3.4e-31 1 No_clan
Cotton_A_20183_CDS 74 147 74 147 PF00366.20 Ribosomal_S17 Domain 1 68 68 78.7 2.6e-22 1 CL0021
Cotton_A_25024_CDS 42 130 35 131 PF00085.20 Thioredoxin Domain 12 102 103 95.0 2.3e-27 1 CL0172
Cotton_A_24560_CDS 164 398 159 399 PF00931.22 NB-ARC Domain 8 251 252 154.3 3.1e-45 1 CL0023
Cotton_A_34026_CDS 63 163 63 163 PF01205.19 UPF0029 Family 1 105 105 95.1 2.9e-27 1 CL0329
Cotton_A_19639_CDS 96 367 94 369 PF00069.25 Pkinase Domain 3 261 264 182.7 8.1e-54 1 CL0016
Cotton_A_02402_CDS 18 95 17 95 PF13334.6 DUF4094 Family 2 88 88 27.6 2.9e-06 1 No_clan
Cotton_A_02402_CDS 129 323 128 325 PF01762.21 Galactosyl_T Family 2 193 195 128.1 3.7e-37 1 CL0110
Cotton_A_17706_CDS 2 48 1 48 PF07983.13 X8 Domain 25 76 76 54.6 1.3e-14 1 No_clan
Cotton_A_02372_CDS 30 97 30 97 PF00076.22 RRM_1 Domain 1 70 70 59.4 2.2e-16 1 CL0221
Cotton_A_03084_CDS 25 246 22 250 PF02230.16 Abhydrolase_2 Domain 5 213 217 137.8 4.3e-40 1 CL0028
Cotton_A_38869_CDS 73 380 73 381 PF10250.9 O-FucT Family 1 335 336 179.6 1.3e-52 1 CL0113
Cotton_A_18546_CDS 9 618 9 618 PF00012.20 HSP70 Family 1 599 599 869.9 7.5e-262 1 CL0108
Cotton_A_02623_CDS 9 285 8 285 PF07992.14 Pyr_redox_2 Domain 2 294 294 123.0 1.4e-35 1 CL0063
Cotton_A_03248_CDS 1 31 1 38 PF00305.19 Lipoxygenase Domain 416 447 674 31.3 7.2e-08 1 No_clan
Cotton_A_03248_CDS 66 175 55 179 PF00305.19 Lipoxygenase Domain 452 563 674 165.9 1.4e-48 1 No_clan
Cotton_A_24938_CDS 109 284 107 290 PF00069.25 Pkinase Domain 3 171 264 84.9 5.6e-24 1 CL0016
Cotton_A_03056_CDS 56 147 56 147 PF16656.5 Pur_ac_phosph_N Domain 1 94 94 86.3 1.5e-24 1 CL0159
Cotton_A_03056_CDS 158 355 157 355 PF00149.28 Metallophos Domain 2 204 204 71.6 1.2e-19 1 CL0163
Cotton_A_03056_CDS 381 441 381 445 PF14008.6 Metallophos_C Domain 1 60 63 71.0 1.1e-19 1 No_clan
Cotton_A_11742_CDS 21 428 13 441 PF00067.22 p450 Domain 31 448 463 278.9 7.1e-83 1 No_clan
Cotton_A_20723_CDS 12 99 12 99 PF01749.20 IBB Family 1 90 90 85.8 2e-24 1 CL0020
Cotton_A_20723_CDS 110 150 109 150 PF00514.23 Arm Repeat 2 41 41 41.2 1e-10 1 CL0020
Cotton_A_20723_CDS 153 191 152 192 PF00514.23 Arm Repeat 2 40 41 44.0 1.4e-11 1 CL0020
Cotton_A_20723_CDS 194 235 194 235 PF00514.23 Arm Repeat 1 41 41 29.8 4.3e-07 1 CL0020
Cotton_A_20723_CDS 248 276 246 276 PF00514.23 Arm Repeat 13 41 41 29.9 3.9e-07 1 CL0020
Cotton_A_20723_CDS 279 317 278 318 PF00514.23 Arm Repeat 2 40 41 35.4 7.3e-09 1 CL0020
Cotton_A_20723_CDS 321 361 320 361 PF00514.23 Arm Repeat 2 41 41 35.2 8.5e-09 1 CL0020
Cotton_A_20723_CDS 363 402 363 403 PF00514.23 Arm Repeat 1 40 41 48.0 7.9e-13 1 CL0020
Cotton_A_20723_CDS 407 444 406 446 PF00514.23 Arm Repeat 2 39 41 31.5 1.2e-07 1 CL0020
Cotton_A_20723_CDS 461 505 461 515 PF16186.5 Arm_3 Family 1 45 53 72.0 2.1e-20 1 CL0020
Cotton_A_18875_CDS 145 215 142 215 PF00575.23 S1 Domain 4 75 75 60.8 1.2e-16 1 CL0021
Cotton_A_18875_CDS 258 321 256 329 PF00575.23 S1 Domain 3 65 75 38.2 1.3e-09 1 CL0021
Cotton_A_18875_CDS 686 830 679 830 PF00889.19 EF_TS Family 72 208 208 109.2 2e-31 1 No_clan
Cotton_A_18875_CDS 926 1070 837 1070 PF00889.19 EF_TS Family 72 208 208 103.2 1.4e-29 1 No_clan
Cotton_A_32191_CDS 92 206 68 225 PF13522.6 GATase_6 Domain 13 109 134 55.1 8.5e-15 1 CL0052
Cotton_A_32191_CDS 365 492 364 493 PF01380.22 SIS Domain 2 130 131 112.8 9.9e-33 1 CL0067
Cotton_A_32191_CDS 536 669 535 670 PF01380.22 SIS Domain 2 130 131 76.0 2.4e-21 1 CL0067
Cotton_A_14730_CDS 121 220 118 220 PF01399.27 PCI Domain 4 105 105 45.2 1.1e-11 1 CL0123
Cotton_A_14730_CDS 226 252 225 252 PF18005.1 eIF3m_C_helix Domain 3 29 29 37.6 1.3e-09 1 No_clan
Cotton_A_08719_CDS 164 206 163 206 PF13639.6 zf-RING_2 Domain 2 44 44 42.9 4.5e-11 1 CL0229
Cotton_A_27369_CDS 15 260 15 261 PF13561.6 adh_short_C2 Domain 1 233 234 207.8 1.6e-61 1 CL0063
Cotton_A_35675_CDS 8 262 7 262 PF00370.21 FGGY_N Domain 2 245 245 250.9 1.3e-74 1 CL0108
Cotton_A_35675_CDS 270 469 270 470 PF02782.16 FGGY_C Domain 1 197 198 200.0 3.1e-59 1 CL0108
Cotton_A_30292_CDS 50 131 30 140 PF00164.25 Ribosom_S12_S23 Family 22 105 114 79.0 2e-22 1 CL0021
Cotton_A_06197_CDS 29 69 28 69 PF08263.12 LRRNT_2 Family 2 41 41 48.4 8.2e-13 1 No_clan
Cotton_A_06197_CDS 134 193 133 193 PF13855.6 LRR_8 Repeat 2 61 61 32.9 3.9e-08 1 CL0022
Cotton_A_06197_CDS 256 277 255 277 PF00560.33 LRR_1 Repeat 2 23 23 14.3 0.044 1 CL0022
Cotton_A_06197_CDS 303 325 303 325 PF00560.33 LRR_1 Repeat 1 23 23 9.7 1.5 1 CL0022
Cotton_A_06197_CDS 424 440 423 440 PF13516.6 LRR_6 Repeat 2 18 24 11.0 0.36 1 CL0022
Cotton_A_06197_CDS 592 629 574 629 PF13855.6 LRR_8 Repeat 24 61 61 30.8 1.8e-07 1 CL0022
Cotton_A_06197_CDS 638 677 634 677 PF13855.6 LRR_8 Repeat 22 61 61 30.7 2e-07 1 CL0022
Cotton_A_06197_CDS 854 1120 852 1122 PF00069.25 Pkinase Domain 3 259 264 148.2 2.8e-43 1 CL0016
Cotton_A_01691_CDS 79 128 78 129 PF00847.20 AP2 Domain 2 53 54 49.1 5e-13 1 CL0081
Cotton_A_28294_CDS 86 558 77 558 PF03219.14 TLC Family 12 491 491 652.6 3.7e-196 1 CL0015
Cotton_A_01216_CDS 85 167 84 178 PF01453.24 B_lectin Domain 2 90 105 65.8 4.4e-18 1 No_clan
Cotton_A_01216_CDS 495 760 492 762 PF00069.25 Pkinase Domain 5 260 264 169.8 7e-50 1 CL0016
Cotton_A_13298_CDS 197 246 197 247 PF13041.6 PPR_2 Repeat 1 49 50 55.1 6.1e-15 1 CL0020
Cotton_A_13298_CDS 269 318 269 318 PF13041.6 PPR_2 Repeat 1 50 50 60.2 1.6e-16 1 CL0020
Cotton_A_13298_CDS 339 388 339 388 PF13041.6 PPR_2 Repeat 1 50 50 54.8 7.6e-15 1 CL0020
Cotton_A_13298_CDS 413 442 412 442 PF01535.20 PPR Family 2 31 31 14.6 0.029 1 CL0020
Cotton_A_35834_CDS 66 85 66 85 PF07725.12 LRR_3 Repeat 1 20 20 24.9 1.2e-05 1 CL0022
Cotton_A_05092_CDS 31 209 30 210 PF00722.21 Glyco_hydro_16 Domain 2 176 177 187.1 1.9e-55 1 CL0004
Cotton_A_05092_CDS 244 289 243 289 PF06955.12 XET_C Family 4 47 47 62.7 2.1e-17 1 CL0004
Cotton_A_19747_CDS 58 114 58 114 PF08246.12 Inhibitor_I29 Domain 1 58 58 43.5 3.2e-11 1 No_clan
Cotton_A_19747_CDS 141 215 141 215 PF00112.23 Peptidase_C1 Domain 1 69 218 90.8 1.3e-25 1 CL0125
Cotton_A_12734_CDS 286 452 286 453 PF07714.17 Pkinase_Tyr Domain 1 176 259 157.7 3.2e-46 1 CL0016
Cotton_A_03358_CDS 85 515 84 515 PF00275.20 EPSP_synthase Family 2 417 417 493.0 6e-148 1 CL0290
Cotton_A_36567_CDS 186 223 186 226 PF00514.23 Arm Repeat 1 37 41 25.0 1.4e-05 1 CL0020
Cotton_A_02009_CDS 46 293 46 294 PF00141.23 peroxidase Domain 1 228 229 261.8 5.5e-78 1 CL0617
Cotton_A_25277_CDS 4 165 3 165 PF07468.11 Agglutinin Domain 2 153 153 68.4 7.6e-19 1 CL0066
Cotton_A_25277_CDS 174 268 170 293 PF07468.11 Agglutinin Domain 5 115 153 43.5 3.7e-11 1 CL0066
Cotton_A_25277_CDS 328 436 306 447 PF01117.20 Aerolysin Domain 105 214 365 25.7 6.1e-06 1 CL0345
Cotton_A_23049_CDS 178 249 178 249 PF02713.14 DUF220 Family 1 73 73 106.7 4.6e-31 1 No_clan
Cotton_A_08349_CDS 84 355 82 355 PF07714.17 Pkinase_Tyr Domain 3 259 259 201.7 1.2e-59 1 CL0016
Cotton_A_28130_CDS 163 231 163 232 PF00076.22 RRM_1 Domain 1 69 70 52.6 2.9e-14 1 CL0221
Cotton_A_28130_CDS 258 324 258 326 PF00076.22 RRM_1 Domain 1 68 70 45.2 5.9e-12 1 CL0221
Cotton_A_28130_CDS 388 405 388 405 PF00098.23 zf-CCHC Domain 1 18 18 23.0 5.8e-05 1 CL0511
Cotton_A_28130_CDS 447 464 447 464 PF00098.23 zf-CCHC Domain 1 18 18 24.0 2.8e-05 1 CL0511
Cotton_A_28130_CDS 514 531 514 531 PF00098.23 zf-CCHC Domain 1 18 18 23.5 4.1e-05 1 CL0511
Cotton_A_01705_CDS 82 305 81 306 PF07859.13 Abhydrolase_3 Domain 2 210 211 195.6 8.9e-58 1 CL0028
Cotton_A_18430_CDS 42 81 40 85 PF00646.33 F-box Domain 3 42 48 26.9 3e-06 1 CL0271
Cotton_A_18430_CDS 165 210 165 210 PF01344.25 Kelch_1 Repeat 1 46 46 46.7 1.7e-12 1 CL0186
Cotton_A_18430_CDS 213 261 212 261 PF01344.25 Kelch_1 Repeat 2 46 46 43.6 1.6e-11 1 CL0186
Cotton_A_07869_CDS 40 215 40 216 PF00350.23 Dynamin_N Domain 1 167 168 186.6 3.4e-55 1 CL0023
Cotton_A_07869_CDS 225 492 225 501 PF01031.20 Dynamin_M Family 1 271 285 203.1 5.3e-60 1 No_clan
Cotton_A_07869_CDS 518 609 516 609 PF02212.18 GED Family 3 92 92 86.4 1e-24 1 No_clan
Cotton_A_11789_CDS 111 412 102 427 PF00295.17 Glyco_hydro_28 Domain 9 309 325 283.3 2.2e-84 1 CL0268
Cotton_A_28242_CDS 1 112 1 112 PF00155.21 Aminotran_1_2 Domain 250 363 363 59.8 2.5e-16 1 CL0061
Cotton_A_14412_CDS 16 113 16 114 PF03195.14 LOB Family 1 98 99 130.9 2e-38 1 No_clan
Cotton_A_17559_CDS 548 787 547 788 PF08323.11 Glyco_transf_5 Domain 2 243 244 223.0 4.5e-66 1 CL0113
Cotton_A_17290_CDS 75 148 75 162 PF00300.22 His_Phos_1 Domain 1 63 194 26.9 3.3e-06 1 CL0071
Cotton_A_16989_CDS 11 101 10 108 PF12796.7 Ank_2 Repeat 2 73 83 34.9 1.8e-08 1 CL0465
Cotton_A_16989_CDS 572 684 571 685 PF13962.6 PGG Domain 2 115 116 106.7 5.9e-31 1 No_clan
Cotton_A_06920_CDS 92 171 88 187 PF00085.20 Thioredoxin Domain 6 83 103 35.5 7.8e-09 1 CL0172
Cotton_A_29364_CDS 6 77 4 77 PF02798.20 GST_N Domain 3 76 76 59.9 2.2e-16 1 CL0172
Cotton_A_29364_CDS 123 189 93 189 PF13410.6 GST_C_2 Domain 5 69 69 41.2 1.2e-10 1 CL0497
Cotton_A_19397_CDS 27 271 27 274 PF08543.12 Phos_pyr_kin Family 1 244 246 296.6 1.2e-88 1 CL0118
Cotton_A_19397_CDS 301 486 301 486 PF02581.17 TMP-TENI Domain 1 181 181 212.4 3.1e-63 1 CL0036
Cotton_A_36880_CDS 34 97 33 97 PF00462.24 Glutaredoxin Domain 2 60 60 29.4 6.8e-07 1 CL0172
Cotton_A_12167_CDS 3 74 1 77 PF00361.20 Proton_antipo_M Family 43 111 293 44.4 1.2e-11 1 CL0425
Cotton_A_12273_CDS 31 310 30 310 PF07651.16 ANTH Domain 2 277 277 235.1 7.3e-70 1 CL0009
Cotton_A_00858_CDS 35 66 31 67 PF08263.12 LRRNT_2 Family 5 40 41 17.8 0.0031 1 No_clan
Cotton_A_00858_CDS 331 365 327 366 PF08263.12 LRRNT_2 Family 5 40 41 19.3 0.0011 1 No_clan
Cotton_A_00858_CDS 381 428 374 428 PF13855.6 LRR_8 Repeat 14 61 61 30.0 3.2e-07 1 CL0022
Cotton_A_00858_CDS 589 863 588 865 PF00069.25 Pkinase Domain 2 260 264 164.3 3.5e-48 1 CL0016
Cotton_A_33931_CDS 96 208 96 209 PF03479.15 DUF296 Domain 1 106 107 107.7 3.7e-31 1 CL0615
Cotton_A_27028_CDS 97 330 97 330 PF02358.16 Trehalose_PPase Family 1 233 233 257.0 1.1e-76 1 CL0137
Cotton_A_22389_CDS 2 71 1 76 PF00305.19 Lipoxygenase Domain 283 352 674 80.8 7.7e-23 1 No_clan
Cotton_A_22389_CDS 87 178 83 180 PF00305.19 Lipoxygenase Domain 386 478 674 106.6 1.2e-30 1 No_clan
Cotton_A_22389_CDS 178 277 177 278 PF00305.19 Lipoxygenase Domain 504 603 674 130.2 8.8e-38 1 No_clan
Cotton_A_07098_CDS 31 481 30 489 PF00067.22 p450 Domain 1 455 463 345.7 3.8e-103 1 No_clan
Cotton_A_04510_CDS 38 360 38 362 PF00657.22 Lipase_GDSL Family 1 198 200 67.6 1.4e-18 1 CL0264
Cotton_A_23067_CDS 184 312 184 328 PF00730.25 HhH-GPD Domain 1 98 108 74.5 8.4e-21 1 CL0198
Cotton_A_23067_CDS 250 278 250 279 PF00633.23 HHH Motif 1 29 30 32.9 3.5e-08 1 CL0198
Cotton_A_16136_CDS 11 127 8 129 PF01873.17 eIF-5_eIF-2B Family 4 115 117 128.1 1.4e-37 1 CL0123
Cotton_A_16136_CDS 364 442 363 442 PF02020.18 W2 Family 2 79 79 72.7 2e-20 1 CL0020
Cotton_A_02020_CDS 15 442 7 442 PF00083.24 Sugar_tr Family 44 452 452 336.6 2.4e-100 1 CL0015
Cotton_A_39351_CDS 104 116 102 117 PF00612.27 IQ Motif 3 15 21 17.5 0.0024 1 CL0220
Cotton_A_39351_CDS 145 162 144 163 PF00612.27 IQ Motif 2 19 21 15.9 0.0081 1 CL0220
Cotton_A_02338_CDS 47 562 44 562 PF01204.18 Trehalase Domain 4 512 512 562.2 1.2e-168 1 CL0059
Cotton_A_21068_CDS 52 141 50 148 PF00466.20 Ribosomal_L10 Family 3 93 100 75.3 3.2e-21 1 No_clan
Cotton_A_26757_CDS 163 241 162 252 PF12894.7 ANAPC4_WD40 Repeat 2 82 92 25.3 1.4e-05 1 CL0186
Cotton_A_26757_CDS 328 357 321 357 PF00400.32 WD40 Repeat 8 36 38 12.2 0.27 1 CL0186
Cotton_A_01851_CDS 83 236 83 236 PF00005.27 ABC_tran Domain 1 137 137 110.1 1.1e-31 1 CL0023
Cotton_A_22584_CDS 76 186 73 187 PF00931.22 NB-ARC Domain 5 119 252 100.5 8.5e-29 1 CL0023
Cotton_A_16294_CDS 157 199 156 200 PF13639.6 zf-RING_2 Domain 2 43 44 41.6 1.1e-10 1 CL0229
Cotton_A_16344_CDS 257 297 257 299 PF13570.6 PQQ_3 Repeat 1 38 40 18.7 0.0018 1 CL0186
Cotton_A_07029_CDS 105 525 104 532 PF00854.21 PTR2 Family 2 387 395 225.5 1e-66 1 CL0015
Cotton_A_07835_CDS 58 148 58 149 PF16656.5 Pur_ac_phosph_N Domain 1 93 94 67.1 1.5e-18 1 CL0159
Cotton_A_07835_CDS 160 358 159 358 PF00149.28 Metallophos Domain 2 204 204 89.4 4.5e-25 1 CL0163
Cotton_A_07835_CDS 384 443 384 445 PF14008.6 Metallophos_C Domain 1 59 63 63.7 2.2e-17 1 No_clan
Cotton_A_32889_CDS 38 137 36 137 PF13947.6 GUB_WAK_bind Domain 3 106 106 68.4 7.7e-19 1 No_clan
Cotton_A_32889_CDS 225 264 217 264 PF14380.6 WAK_assoc Domain 67 104 104 29.5 9.3e-07 1 No_clan
Cotton_A_06325_CDS 16 142 16 142 PF02365.15 NAM Family 1 126 126 137.7 3.7e-40 1 No_clan
Cotton_A_34114_CDS 175 326 175 326 PF00005.27 ABC_tran Domain 1 137 137 99.8 1.7e-28 1 CL0023
Cotton_A_34114_CDS 492 701 492 701 PF01061.24 ABC2_membrane Family 1 210 210 140.1 6.2e-41 1 CL0181
Cotton_A_35092_CDS 23 279 23 279 PF00069.25 Pkinase Domain 1 264 264 238.9 5.9e-71 1 CL0016
Cotton_A_30940_CDS 93 136 92 136 PF13639.6 zf-RING_2 Domain 2 44 44 44.4 1.5e-11 1 CL0229
Cotton_A_04003_CDS 10 76 1 77 PF02519.14 Auxin_inducible Family 22 89 90 91.3 3.2e-26 1 No_clan
Cotton_A_10022_CDS 15 138 15 138 PF02365.15 NAM Family 1 126 126 123.5 9.2e-36 1 No_clan
Cotton_A_26506_CDS 1 126 1 126 PF03095.15 PTPA Family 176 301 301 224.6 1.9e-66 1 No_clan
Cotton_A_33180_CDS 143 177 142 177 PF05553.11 DUF761 Family 2 36 36 58.1 4.6e-16 1 No_clan
Cotton_A_02559_CDS 38 282 38 282 PF04873.13 EIN3 Family 1 252 252 380.6 2.9e-114 1 No_clan
Cotton_A_00212_CDS 33 94 8 109 PF02362.21 B3 Family 28 88 101 36.8 2.7e-09 1 CL0405
Cotton_A_03374_CDS 613 657 610 658 PF13833.6 EF-hand_8 Domain 8 54 55 26.3 4.7e-06 1 CL0220
Cotton_A_01540_CDS 7 65 6 66 PF03931.15 Skp1_POZ Domain 2 62 63 108.7 1.1e-31 1 CL0033
Cotton_A_01540_CDS 107 154 107 154 PF01466.19 Skp1 Domain 1 48 48 105.3 1.3e-30 1 No_clan
Cotton_A_15244_CDS 59 90 58 91 PF13041.6 PPR_2 Repeat 2 33 50 35.7 7.3e-09 1 CL0020
Cotton_A_15244_CDS 92 124 92 125 PF01535.20 PPR Family 1 30 31 10.6 0.54 1 CL0020
Cotton_A_15244_CDS 126 156 126 156 PF01535.20 PPR Family 1 31 31 42.4 3.9e-11 1 CL0020
Cotton_A_15244_CDS 157 185 157 187 PF01535.20 PPR Family 1 29 31 25.9 7.4e-06 1 CL0020
Cotton_A_15244_CDS 189 212 188 216 PF01535.20 PPR Family 2 25 31 11.4 0.31 1 CL0020
Cotton_A_15244_CDS 227 249 225 251 PF12854.7 PPR_1 Repeat 10 32 34 24.2 1.9e-05 1 CL0020
Cotton_A_15244_CDS 269 297 269 299 PF01535.20 PPR Family 1 29 31 31.1 1.6e-07 1 CL0020
Cotton_A_15244_CDS 300 326 300 327 PF01535.20 PPR Family 1 27 31 29.3 6e-07 1 CL0020
Cotton_A_15244_CDS 332 359 331 361 PF01535.20 PPR Family 2 29 31 30.6 2.3e-07 1 CL0020
Cotton_A_15244_CDS 361 406 359 407 PF13041.6 PPR_2 Repeat 3 49 50 35.7 7.4e-09 1 CL0020
Cotton_A_15244_CDS 434 457 434 458 PF01535.20 PPR Family 4 27 31 11.3 0.33 1 CL0020
Cotton_A_15244_CDS 460 507 460 509 PF13041.6 PPR_2 Repeat 1 48 50 38.8 7.6e-10 1 CL0020
Cotton_A_15244_CDS 536 559 534 561 PF01535.20 PPR Family 3 26 31 17.5 0.0035 1 CL0020
Cotton_A_20115_CDS 1 248 1 248 PF07714.17 Pkinase_Tyr Domain 29 259 259 98.6 3.4e-28 1 CL0016
Cotton_A_21586_CDS 52 100 51 101 PF00847.20 AP2 Domain 2 53 54 36.9 3.1e-09 1 CL0081
Cotton_A_14171_CDS 216 404 216 404 PF06733.15 DEAD_2 Family 1 176 176 186.2 3.8e-55 1 CL0023
Cotton_A_14171_CDS 667 871 667 884 PF13307.6 Helicase_C_2 Domain 1 165 171 167.2 3.6e-49 1 CL0023
Cotton_A_37089_CDS 16 307 16 307 PF00069.25 Pkinase Domain 1 264 264 223.4 3.3e-66 1 CL0016
Cotton_A_15095_CDS 6 132 1 151 PF00067.22 p450 Domain 306 437 463 125.9 1.8e-36 1 No_clan
Cotton_A_29760_CDS 9 78 9 79 PF07983.13 X8 Domain 1 75 76 74.8 6.5e-21 1 No_clan
Cotton_A_10610_CDS 6 67 3 67 PF02637.18 GatB_Yqey Domain 87 148 148 77.5 9e-22 1 CL0279
Cotton_A_22988_CDS 17 101 7 108 PF14368.6 LTP_2 Family 12 91 97 23.2 5.6e-05 1 CL0482
Cotton_A_25423_CDS 142 224 142 225 PF00708.18 Acylphosphatase Domain 1 84 85 79.9 1.4e-22 1 CL0622
Cotton_A_29236_CDS 191 248 178 251 PF14378.6 PAP2_3 Family 126 184 190 29.3 6e-07 1 CL0525
Cotton_A_14616_CDS 217 270 216 272 PF13920.6 zf-C3HC4_3 Domain 2 45 50 29.0 7.3e-07 1 CL0229
Cotton_A_14398_CDS 61 112 61 113 PF09713.10 A_thal_3526 Domain 1 52 53 91.3 3.3e-26 1 No_clan
Cotton_A_23136_CDS 12 43 3 46 PF00542.19 Ribosomal_L12 Domain 33 64 67 26.0 8.5e-06 1 No_clan
Cotton_A_35957_CDS 2 50 1 50 PF00010.26 HLH Domain 4 53 53 33.3 3.4e-08 1 No_clan
Cotton_A_28599_CDS 382 651 379 651 PF07714.17 Pkinase_Tyr Domain 4 259 259 160.4 4.9e-47 1 CL0016
Cotton_A_38491_CDS 5 113 2 114 PF00113.22 Enolase_C Domain 77 189 296 128.5 3e-37 1 CL0256
Cotton_A_10312_CDS 137 157 133 158 PF00642.24 zf-CCCH Family 5 26 27 26.2 5.2e-06 1 CL0537
Cotton_A_08365_CDS 10 74 7 76 PF09803.9 Pet100 Family 5 66 73 42.8 5.5e-11 1 No_clan
Cotton_A_04648_CDS 6 96 5 115 PF14226.6 DIOX_N Family 2 98 118 55.6 8.4e-15 1 CL0029
Cotton_A_04648_CDS 160 254 155 254 PF03171.20 2OG-FeII_Oxy Domain 6 101 101 96.6 1e-27 1 CL0029
Cotton_A_08219_CDS 112 216 110 217 PF01765.19 RRF Domain 3 107 162 136.8 6.1e-40 1 No_clan
Cotton_A_08219_CDS 215 251 213 253 PF01765.19 RRF Domain 123 159 162 27.6 2.3e-06 1 No_clan
Cotton_A_28247_CDS 167 208 166 208 PF03790.13 KNOX1 Family 2 43 43 62.3 2.5e-17 1 No_clan
Cotton_A_28247_CDS 225 275 224 275 PF03791.13 KNOX2 Family 2 48 48 74.6 3.2e-21 1 No_clan
Cotton_A_28247_CDS 333 354 333 354 PF03789.13 ELK Domain 1 22 22 28.7 1e-06 1 No_clan
Cotton_A_13352_CDS 308 603 308 623 PF02889.16 Sec63 Family 1 218 257 210.7 1.9e-62 1 No_clan
Cotton_A_25262_CDS 170 231 169 234 PF00226.31 DnaJ Domain 2 58 63 48.4 7.6e-13 1 CL0392
Cotton_A_06592_CDS 34 358 25 359 PF03492.15 Methyltransf_7 Family 10 332 334 349.8 1.6e-104 1 CL0063
Cotton_A_07232_CDS 32 353 29 353 PF00704.28 Glyco_hydro_18 Domain 4 312 312 286.9 2.6e-85 1 CL0058
Cotton_A_02807_CDS 38 156 34 269 PF07651.16 ANTH Domain 6 120 277 58.7 4.4e-16 1 CL0009
Cotton_A_30384_CDS 88 207 77 209 PF00664.23 ABC_membrane Family 86 201 274 57.4 1.8e-15 1 CL0241
Cotton_A_24768_CDS 21 306 21 307 PF14576.6 SEO_N Family 1 286 287 422.5 7.2e-127 1 No_clan
Cotton_A_24768_CDS 469 697 468 698 PF14577.6 SEO_C Family 2 231 232 301.9 2.7e-90 1 No_clan
Cotton_A_23677_CDS 112 374 111 375 PF00069.25 Pkinase Domain 2 260 264 142.7 1.3e-41 1 CL0016
Cotton_A_09575_CDS 68 89 63 91 PF01535.20 PPR Family 8 29 31 10.7 0.52 1 CL0020
Cotton_A_09575_CDS 92 121 92 122 PF01535.20 PPR Family 1 30 31 31.2 1.4e-07 1 CL0020
Cotton_A_09575_CDS 172 196 172 199 PF01535.20 PPR Family 4 28 31 12.4 0.15 1 CL0020
Cotton_A_09575_CDS 197 245 197 246 PF13041.6 PPR_2 Repeat 1 49 50 32.4 7.7e-08 1 CL0020
Cotton_A_09575_CDS 303 325 303 330 PF01535.20 PPR Family 1 23 31 14.2 0.038 1 CL0020
Cotton_A_09575_CDS 452 474 450 478 PF01535.20 PPR Family 4 26 31 12.1 0.18 1 CL0020
Cotton_A_09575_CDS 477 524 477 526 PF13041.6 PPR_2 Repeat 1 48 50 36.6 3.8e-09 1 CL0020
Cotton_A_09575_CDS 580 607 580 608 PF01535.20 PPR Family 1 28 31 10.1 0.79 1 CL0020
Cotton_A_09575_CDS 653 678 653 680 PF01535.20 PPR Family 4 29 31 10.0 0.89 1 CL0020
Cotton_A_09575_CDS 680 726 678 727 PF13041.6 PPR_2 Repeat 3 49 50 31.4 1.5e-07 1 CL0020
Cotton_A_09575_CDS 753 777 752 781 PF01535.20 PPR Family 2 26 31 9.5 1.3 1 CL0020
Cotton_A_09575_CDS 847 966 845 966 PF14432.6 DYW_deaminase Family 3 127 127 83.0 1.6e-23 1 CL0109
Cotton_A_11674_CDS 51 132 40 133 PF02362.21 B3 Family 15 100 101 56.0 2.7e-15 1 CL0405
Cotton_A_20778_CDS 67 256 66 263 PF03798.16 TRAM_LAG1_CLN8 Domain 2 191 198 64.4 1.1e-17 1 No_clan
Cotton_A_18159_CDS 44 343 44 344 PF00850.19 Hist_deacetyl Domain 1 306 307 295.4 5.5e-88 1 CL0302
Cotton_A_04145_CDS 85 174 84 174 PF10674.9 Ycf54 Family 2 92 92 118.3 1.4e-34 1 No_clan
Cotton_A_27160_CDS 37 472 34 472 PF05602.12 CLPTM1 Family 4 429 429 508.3 1.9e-152 1 No_clan
Cotton_A_18596_CDS 8 217 5 222 PF00335.20 Tetraspanin Family 4 223 229 73.1 2.6e-20 1 CL0347
Cotton_A_04270_CDS 127 569 127 571 PF03164.14 Mon1 Family 1 401 404 469.0 1.3e-140 1 No_clan
Cotton_A_06571_CDS 30 283 27 284 PF00069.25 Pkinase Domain 5 263 264 172.0 1.5e-50 1 CL0016
Cotton_A_03849_CDS 90 381 90 382 PF07887.11 Calmodulin_bind Family 1 291 292 419.5 6.5e-126 1 No_clan
Cotton_A_19298_CDS 178 386 177 387 PF00337.22 Gal-bind_lectin Domain 2 133 134 161.4 8e-48 1 CL0004
Cotton_A_19298_CDS 434 613 433 619 PF01762.21 Galactosyl_T Family 2 187 195 108.7 3.2e-31 1 CL0110
Cotton_A_12719_CDS 72 184 64 191 PF01464.20 SLT Domain 10 108 117 43.9 1.6e-11 1 CL0037
Cotton_A_00672_CDS 19 87 4 89 PF02519.14 Auxin_inducible Family 20 88 90 84.6 4e-24 1 No_clan
Cotton_A_21709_CDS 61 309 43 312 PF00481.21 PP2C Family 35 252 258 136.7 1.1e-39 1 CL0238
Cotton_A_01301_CDS 49 358 45 361 PF04258.13 Peptidase_A22B Family 5 281 284 237.1 2.7e-70 1 CL0130
Cotton_A_23786_CDS 461 864 459 865 PF02181.23 FH2 Family 3 371 372 399.2 1.8e-119 1 No_clan
Cotton_A_27914_CDS 30 265 17 289 PF00888.22 Cullin Family 15 250 618 136.0 1.7e-39 1 No_clan
Cotton_A_14564_CDS 43 130 43 131 PF06749.12 DUF1218 Family 1 90 91 70.5 1.3e-19 1 No_clan
Cotton_A_08436_CDS 1 120 1 122 PF00833.18 Ribosomal_S17e Family 1 120 122 202.9 1.1e-60 1 No_clan
Cotton_A_39501_CDS 599 640 597 640 PF13639.6 zf-RING_2 Domain 3 44 44 46.7 2.9e-12 1 CL0229
Cotton_A_04486_CDS 31 130 19 146 PF00293.28 NUDIX Domain 19 119 131 34.9 1.4e-08 1 CL0261
Cotton_A_15233_CDS 271 388 244 425 PF00201.18 UDPGT Family 274 384 499 87.1 1.1e-24 1 CL0113
Cotton_A_25162_CDS 35 487 35 501 PF00067.22 p450 Domain 1 447 463 338.4 6.2e-101 1 No_clan
Cotton_A_20000_CDS 3 492 1 494 PF02450.15 LCAT Family 16 390 392 209.0 1.3e-61 1 CL0028
Cotton_A_35956_CDS 67 123 65 127 PF00170.21 bZIP_1 Family 5 61 64 45.6 5.6e-12 1 CL0018
Cotton_A_01781_CDS 178 348 178 348 PF00005.27 ABC_tran Domain 1 137 137 90.9 9.5e-26 1 CL0023
Cotton_A_01781_CDS 514 649 514 649 PF00005.27 ABC_tran Domain 1 137 137 85.6 4.3e-24 1 CL0023
Cotton_A_31462_CDS 385 470 371 472 PF01501.20 Glyco_transf_8 Family 158 252 256 29.5 5.2e-07 1 CL0110
Cotton_A_05848_CDS 30 69 30 71 PF14555.6 UBA_4 Domain 1 40 43 43.5 2e-11 1 CL0214
Cotton_A_05848_CDS 157 267 156 267 PF03556.15 Cullin_binding Family 2 120 120 127.7 3.1e-37 1 CL0220
Cotton_A_01380_CDS 2 57 1 57 PF08069.12 Ribosomal_S13_N Domain 5 60 60 91.7 2.2e-26 1 No_clan
Cotton_A_01380_CDS 71 142 67 145 PF00312.22 Ribosomal_S15 Domain 4 77 81 55.8 4e-15 1 CL0600
Cotton_A_28540_CDS 149 388 148 389 PF05637.12 Glyco_transf_34 Family 2 238 239 247.8 1.2e-73 1 CL0110
Cotton_A_07803_CDS 79 228 68 229 PF01553.21 Acyltransferase Family 9 134 135 63.1 2e-17 1 CL0228
Cotton_A_07803_CDS 239 312 239 312 PF16076.5 Acyltransf_C Family 1 74 74 80.9 5.2e-23 1 No_clan
Cotton_A_07467_CDS 70 347 65 348 PF03151.16 TPT Family 8 289 290 45.0 8.4e-12 1 CL0184
Cotton_A_26694_CDS 4 329 4 334 PF00295.17 Glyco_hydro_28 Domain 1 319 325 320.7 9.2e-96 1 CL0268
Cotton_A_29352_CDS 20 66 20 66 PF00319.18 SRF-TF Domain 1 47 48 48.4 4.7e-13 1 No_clan
Cotton_A_11573_CDS 153 337 150 337 PF00544.19 Pec_lyase_C Domain 29 211 211 81.7 5.5e-23 1 CL0268
Cotton_A_27673_CDS 1 509 1 509 PF06273.11 eIF-4B Family 1 502 502 741.3 6.7e-223 1 No_clan
Cotton_A_05961_CDS 75 293 74 293 PF04720.12 PDDEXK_6 Family 2 221 221 265.8 3.7e-79 1 No_clan
Cotton_A_11242_CDS 293 413 293 413 PF03109.16 ABC1 Family 1 119 119 128.1 1.9e-37 1 CL0016
Cotton_A_31567_CDS 107 153 107 153 PF01476.20 LysM Domain 1 44 44 37.7 1.6e-09 1 CL0187
Cotton_A_31567_CDS 171 214 171 214 PF01476.20 LysM Domain 1 44 44 24.3 2.5e-05 1 CL0187
Cotton_A_34191_CDS 158 419 157 429 PF01490.18 Aa_trans Family 2 280 409 152.0 1.9e-44 1 CL0062
Cotton_A_24165_CDS 134 324 125 326 PF01786.17 AOX Family 12 213 215 272.3 2.6e-81 1 CL0044
Cotton_A_04243_CDS 52 96 42 97 PF02933.17 CDC48_2 Domain 19 63 64 23.2 4.2e-05 1 CL0402
Cotton_A_04243_CDS 146 221 146 230 PF00004.29 AAA Domain 1 77 132 87.6 9.5e-25 1 CL0023
Cotton_A_02704_CDS 6 93 6 122 PF14226.6 DIOX_N Family 1 83 118 70.8 1.6e-19 1 CL0029
Cotton_A_02704_CDS 160 255 159 256 PF03171.20 2OG-FeII_Oxy Domain 2 100 101 71.0 9.6e-20 1 CL0029
Cotton_A_03686_CDS 17 55 16 60 PF12937.7 F-box-like Domain 2 41 48 42.1 5.7e-11 1 CL0271
Cotton_A_03686_CDS 223 371 220 386 PF07734.13 FBA_1 Family 4 148 164 32.5 7.1e-08 1 CL0162
Cotton_A_00593_CDS 135 449 135 450 PF10250.9 O-FucT Family 1 335 336 230.2 5.2e-68 1 CL0113
Cotton_A_30099_CDS 366 466 362 471 PF16501.5 SCAPER_N Family 5 93 98 61.5 5.7e-17 1 No_clan
Cotton_A_07917_CDS 191 232 191 237 PF00076.22 RRM_1 Domain 1 39 70 23.5 3.6e-05 1 CL0221
Cotton_A_07917_CDS 302 374 302 375 PF00076.22 RRM_1 Domain 1 69 70 38.8 6.1e-10 1 CL0221
Cotton_A_23317_CDS 37 101 36 101 PF00808.23 CBFD_NFYB_HMF Domain 2 65 65 94.9 2.6e-27 1 CL0012
Cotton_A_14471_CDS 25 319 23 322 PF01406.19 tRNA-synt_1e Family 3 298 301 417.7 2.8e-125 1 CL0039
Cotton_A_00689_CDS 17 76 17 76 PF00137.21 ATP-synt_C Family 1 60 60 52.1 6.2e-14 1 No_clan
Cotton_A_00689_CDS 97 155 96 155 PF00137.21 ATP-synt_C Family 2 60 60 72.2 3.2e-20 1 No_clan
Cotton_A_07601_CDS 62 84 48 84 PF00400.32 WD40 Repeat 16 37 38 18.8 0.0022 1 CL0186
Cotton_A_07601_CDS 185 211 178 216 PF00400.32 WD40 Repeat 8 33 38 13.8 0.084 1 CL0186
Cotton_A_07601_CDS 232 261 222 261 PF00400.32 WD40 Repeat 10 38 38 18.0 0.0038 1 CL0186
Cotton_A_07601_CDS 533 561 526 562 PF00400.32 WD40 Repeat 10 37 38 20.2 0.00076 1 CL0186
Cotton_A_07601_CDS 576 605 569 605 PF00400.32 WD40 Repeat 9 38 38 13.7 0.09 1 CL0186
Cotton_A_15728_CDS 102 187 101 195 PF01453.24 B_lectin Domain 2 92 105 52.5 5.7e-14 1 No_clan
Cotton_A_15728_CDS 344 393 337 398 PF08276.11 PAN_2 Domain 7 59 67 29.0 8.6e-07 1 CL0168
Cotton_A_27883_CDS 40 90 39 99 PF00013.29 KH_1 Domain 2 53 66 27.2 2.5e-06 1 CL0007
Cotton_A_27883_CDS 177 243 176 245 PF00013.29 KH_1 Domain 2 64 66 43.2 2.6e-11 1 CL0007
Cotton_A_27883_CDS 320 371 320 386 PF00013.29 KH_1 Domain 1 53 66 45.7 4.2e-12 1 CL0007
Cotton_A_27883_CDS 406 473 405 474 PF00013.29 KH_1 Domain 2 65 66 49.2 3.5e-13 1 CL0007
Cotton_A_27883_CDS 596 659 596 660 PF00013.29 KH_1 Domain 1 65 66 47.5 1.2e-12 1 CL0007
Cotton_A_28615_CDS 172 298 172 299 PF10539.9 Dev_Cell_Death Domain 1 126 127 137.8 1.7e-40 1 No_clan
Cotton_A_15413_CDS 11 51 10 54 PF00646.33 F-box Domain 3 43 48 20.4 0.00035 1 CL0271
Cotton_A_15413_CDS 118 159 115 159 PF01344.25 Kelch_1 Repeat 7 46 46 32.5 4.6e-08 1 CL0186
Cotton_A_15413_CDS 162 207 161 207 PF01344.25 Kelch_1 Repeat 2 46 46 34.6 1e-08 1 CL0186
Cotton_A_18302_CDS 469 578 469 578 PF07839.11 CaM_binding Domain 1 117 117 122.5 1.4e-35 1 No_clan
Cotton_A_09002_CDS 139 193 118 197 PF00694.19 Aconitase_C Domain 74 127 131 65.9 4.2e-18 1 CL0364
Cotton_A_06259_CDS 16 267 15 267 PF00069.25 Pkinase Domain 2 264 264 233.7 2.3e-69 1 CL0016
Cotton_A_39244_CDS 66 231 65 232 PF00504.21 Chloroa_b-bind Family 2 160 161 172.1 1.3e-50 1 No_clan
Cotton_A_22441_CDS 78 368 51 368 PF00225.23 Kinesin Domain 33 333 333 202.9 6.1e-60 1 CL0023
Cotton_A_23900_CDS 337 496 337 500 PF01764.25 Lipase_3 Family 1 137 142 33.4 3.4e-08 1 CL0028
Cotton_A_10866_CDS 306 456 277 468 PF00201.18 UDPGT Family 273 412 499 82.4 2.9e-23 1 CL0113
Cotton_A_20156_CDS 20 83 19 85 PF01423.22 LSM Domain 2 65 67 65.3 2.9e-18 1 CL0527
Cotton_A_03335_CDS 2 97 1 100 PF03004.14 Transposase_24 Family 28 131 142 45.6 7.2e-12 1 No_clan
Cotton_A_32819_CDS 1 442 1 449 PF00067.22 p450 Domain 21 455 463 330.5 1.6e-98 1 No_clan
Cotton_A_10455_CDS 1 53 1 53 PF00403.26 HMA Domain 7 62 62 59.3 3.6e-16 1 No_clan
Cotton_A_16970_CDS 710 784 708 784 PF16135.5 Jas Family 3 76 76 74.5 5.8e-21 1 No_clan
Cotton_A_40673_CDS 20 146 17 164 PF13528.6 Glyco_trans_1_3 Domain 5 123 321 28.6 8.3e-07 1 CL0113
Cotton_A_40673_CDS 492 535 490 536 PF10509.9 GalKase_gal_bdg Domain 7 48 49 25.2 8.6e-06 1 CL0329
Cotton_A_40673_CDS 636 701 634 702 PF00288.26 GHMP_kinases_N Family 3 65 66 40.5 2.4e-10 1 CL0329
Cotton_A_16183_CDS 86 374 85 375 PF05212.12 DUF707 Family 2 295 296 458.4 9.9e-138 1 No_clan
Cotton_A_39791_CDS 93 420 91 422 PF00520.31 Ion_trans Family 4 243 245 115.1 3e-33 1 CL0030
Cotton_A_39791_CDS 516 604 514 609 PF00027.29 cNMP_binding Domain 6 84 89 34.8 1.3e-08 1 CL0029
Cotton_A_36350_CDS 4 76 3 76 PF02798.20 GST_N Domain 2 76 76 61.4 7.7e-17 1 CL0172
Cotton_A_36350_CDS 113 193 86 193 PF00043.25 GST_C Domain 17 93 93 45.7 5.7e-12 1 CL0497
Cotton_A_11221_CDS 86 133 82 133 PF04570.14 zf-FLZ Domain 7 54 54 87.7 2.4e-25 1 CL0175
Cotton_A_35804_CDS 34 118 34 124 PF01190.17 Pollen_Ole_e_I Family 1 93 99 71.0 8.2e-20 1 CL0287
Cotton_A_23127_CDS 655 703 654 704 PF13920.6 zf-C3HC4_3 Domain 2 49 50 47.0 1.7e-12 1 CL0229
Cotton_A_00101_CDS 57 219 56 222 PF00270.29 DEAD Domain 2 173 176 142.6 1e-41 1 CL0023
Cotton_A_00101_CDS 258 366 257 366 PF00271.31 Helicase_C Family 2 111 111 108.6 2e-31 1 CL0023
Cotton_A_03000_CDS 587 615 586 618 PF13181.6 TPR_8 Repeat 2 30 34 11.9 0.21 1 CL0020
Cotton_A_34216_CDS 71 199 71 201 PF01467.26 CTP_transf_like Domain 1 141 143 84.8 6.4e-24 1 CL0039
Cotton_A_34216_CDS 262 353 262 415 PF01467.26 CTP_transf_like Domain 1 92 143 57.0 2.4e-15 1 CL0039
Cotton_A_18212_CDS 1 131 1 136 PF00069.25 Pkinase Domain 73 196 264 76.2 2.5e-21 1 CL0016
Cotton_A_02119_CDS 29 93 28 93 PF00808.23 CBFD_NFYB_HMF Domain 2 65 65 96.7 7.1e-28 1 CL0012
Cotton_A_21615_CDS 11 53 10 56 PF00319.18 SRF-TF Domain 2 44 48 50.7 8.9e-14 1 No_clan
Cotton_A_32520_CDS 1 922 1 922 PF05695.12 DUF825 Family 565 1486 1486 2034.0 0 1 No_clan
Cotton_A_32520_CDS 1072 1255 1072 1256 PF00004.29 AAA Domain 1 131 132 31.6 1.9e-07 1 CL0023
Cotton_A_07707_CDS 15 35 12 35 PF13912.6 zf-C2H2_6 Domain 4 24 27 21.3 0.00019 1 CL0361
Cotton_A_07707_CDS 223 247 222 248 PF13912.6 zf-C2H2_6 Domain 2 26 27 37.6 1.5e-09 1 CL0361
Cotton_A_07707_CDS 293 317 293 319 PF13912.6 zf-C2H2_6 Domain 1 25 27 48.6 5.5e-13 1 CL0361
Cotton_A_09175_CDS 128 171 127 171 PF13639.6 zf-RING_2 Domain 2 44 44 52.0 6.4e-14 1 CL0229
Cotton_A_10187_CDS 61 157 51 158 PF01521.20 Fe-S_biosyn Family 9 110 111 47.6 1.6e-12 1 No_clan
Cotton_A_41208_CDS 117 549 113 550 PF00854.21 PTR2 Family 5 394 395 368.5 3.6e-110 1 CL0015
Cotton_A_11935_CDS 26 156 17 169 PF03662.14 Glyco_hydro_79n Domain 121 252 318 183.2 5.9e-54 1 CL0058
Cotton_A_26440_CDS 233 412 233 412 PF04833.15 COBRA Family 1 165 165 192.5 4.6e-57 1 No_clan
Cotton_A_16403_CDS 673 788 673 788 PF13355.6 DUF4101 Family 1 117 117 110.4 6.8e-32 1 No_clan
Cotton_A_00025_CDS 61 352 61 353 PF02598.17 Methyltrn_RNA_3 Family 1 285 286 346.8 1e-103 1 CL0098
Cotton_A_33804_CDS 12 99 11 100 PF03083.16 MtN3_slv Family 2 86 87 81.7 2.9e-23 1 CL0141
Cotton_A_33804_CDS 136 220 135 221 PF03083.16 MtN3_slv Family 2 86 87 85.9 1.4e-24 1 CL0141
Cotton_A_16907_CDS 194 226 194 227 PF12854.7 PPR_1 Repeat 1 33 34 28.5 9.3e-07 1 CL0020
Cotton_A_16907_CDS 233 282 233 282 PF13041.6 PPR_2 Repeat 1 50 50 54.1 1.3e-14 1 CL0020
Cotton_A_16907_CDS 307 330 306 333 PF01535.20 PPR Family 2 25 31 14.8 0.024 1 CL0020
Cotton_A_16907_CDS 337 359 337 365 PF01535.20 PPR Family 1 23 31 19.2 0.001 1 CL0020
Cotton_A_16907_CDS 370 419 370 419 PF13041.6 PPR_2 Repeat 1 50 50 64.9 5.5e-18 1 CL0020
Cotton_A_16907_CDS 441 489 440 489 PF13041.6 PPR_2 Repeat 2 50 50 75.0 3.7e-21 1 CL0020
Cotton_A_16907_CDS 511 559 510 559 PF13041.6 PPR_2 Repeat 2 50 50 61.9 4.7e-17 1 CL0020
Cotton_A_16907_CDS 580 629 580 629 PF13041.6 PPR_2 Repeat 1 50 50 61.6 5.8e-17 1 CL0020
Cotton_A_16907_CDS 647 675 646 677 PF12854.7 PPR_1 Repeat 2 30 34 36.3 3.3e-09 1 CL0020
Cotton_A_23453_CDS 89 195 88 196 PF14223.6 Retrotran_gag_2 Family 2 109 138 46.7 2.5e-12 1 CL0523
Cotton_A_21505_CDS 327 536 326 536 PF11926.8 DUF3444 Family 2 212 212 244.7 7.2e-73 1 No_clan
Cotton_A_15860_CDS 27 104 25 107 PF07011.11 Elf4 Domain 3 80 83 126.5 2.7e-37 1 No_clan
Cotton_A_11129_CDS 52 75 51 76 PF01535.20 PPR Family 7 30 31 14.1 0.042 1 CL0020
Cotton_A_11129_CDS 248 293 247 296 PF13041.6 PPR_2 Repeat 2 47 50 43.2 3.2e-11 1 CL0020
Cotton_A_11129_CDS 348 395 348 397 PF13041.6 PPR_2 Repeat 1 48 50 33.3 4.1e-08 1 CL0020
Cotton_A_11129_CDS 453 479 452 482 PF01535.20 PPR Family 2 28 31 21.0 0.00027 1 CL0020
Cotton_A_11129_CDS 484 532 484 533 PF13041.6 PPR_2 Repeat 1 49 50 46.5 3.1e-12 1 CL0020
Cotton_A_11129_CDS 595 617 592 622 PF01535.20 PPR Family 4 26 31 11.6 0.26 1 CL0020
Cotton_A_11129_CDS 624 668 621 669 PF13041.6 PPR_2 Repeat 5 49 50 38.6 9.3e-10 1 CL0020
Cotton_A_11129_CDS 695 719 694 722 PF01535.20 PPR Family 2 26 31 11.6 0.26 1 CL0020
Cotton_A_11129_CDS 762 790 761 790 PF01535.20 PPR Family 3 31 31 12.5 0.14 1 CL0020
Cotton_A_34543_CDS 28 83 26 84 PF02701.15 zf-Dof Family 3 58 59 114.4 1.8e-33 1 No_clan
Cotton_A_19776_CDS 120 361 113 364 PF00078.27 RVT_1 Family 14 219 222 39.8 3.5e-10 1 CL0027
Cotton_A_19776_CDS 522 621 518 650 PF01348.21 Intron_maturas2 Family 5 108 140 41.7 1e-10 1 CL0359
Cotton_A_12443_CDS 1010 1065 1008 1068 PF17921.1 Integrase_H2C2 Domain 3 55 58 30.3 3.3e-07 1 CL0361
Cotton_A_23891_CDS 53 86 14 86 PF11837.8 DUF3357 Family 72 109 109 32.0 1.4e-07 1 No_clan
Cotton_A_23891_CDS 94 413 94 413 PF00251.20 Glyco_hydro_32N Domain 1 305 305 344.5 6.3e-103 1 CL0143
Cotton_A_23891_CDS 416 602 416 602 PF08244.12 Glyco_hydro_32C Domain 1 158 158 95.9 2.3e-27 1 CL0004
Cotton_A_29225_CDS 6 91 5 99 PF12796.7 Ank_2 Repeat 2 73 83 27.4 3.8e-06 1 CL0465
Cotton_A_29225_CDS 109 217 109 217 PF12796.7 Ank_2 Repeat 1 83 83 32.6 8.8e-08 1 CL0465
Cotton_A_21180_CDS 87 135 86 136 PF00847.20 AP2 Domain 3 53 54 45.5 6.6e-12 1 CL0081
Cotton_A_08132_CDS 170 276 169 298 PF00561.20 Abhydrolase_1 Domain 3 107 257 64.5 1.2e-17 1 CL0028
Cotton_A_34252_CDS 78 171 78 186 PF00225.23 Kinesin Domain 1 103 333 75.8 2.7e-21 1 CL0023
Cotton_A_18993_CDS 134 393 119 396 PF07714.17 Pkinase_Tyr Domain 40 256 259 88.4 4.6e-25 1 CL0016
Cotton_A_38692_CDS 66 121 64 122 PF02701.15 zf-Dof Family 3 58 59 110.4 3.4e-32 1 No_clan
Cotton_A_18564_CDS 91 367 87 369 PF07714.17 Pkinase_Tyr Domain 5 257 259 148.8 1.7e-43 1 CL0016
Cotton_A_17298_CDS 164 228 164 228 PF12394.8 DUF3657 Family 1 66 66 61.3 9.9e-17 1 No_clan
Cotton_A_17298_CDS 540 744 537 746 PF05057.14 DUF676 Family 4 217 219 188.4 1.2e-55 1 CL0028
Cotton_A_18719_CDS 74 119 73 122 PF13041.6 PPR_2 Repeat 2 47 50 37.4 2.2e-09 1 CL0020
Cotton_A_18719_CDS 151 175 149 176 PF01535.20 PPR Family 6 30 31 14.2 0.038 1 CL0020
Cotton_A_18719_CDS 248 276 247 276 PF01535.20 PPR Family 2 30 31 14.7 0.027 1 CL0020
Cotton_A_18719_CDS 278 308 278 308 PF01535.20 PPR Family 1 31 31 14.1 0.041 1 CL0020
Cotton_A_18719_CDS 377 424 376 424 PF13041.6 PPR_2 Repeat 2 48 50 34.1 2.3e-08 1 CL0020
Cotton_A_18719_CDS 453 476 451 478 PF01535.20 PPR Family 3 26 31 12.3 0.16 1 CL0020
Cotton_A_18719_CDS 524 547 521 547 PF01535.20 PPR Family 8 31 31 11.1 0.37 1 CL0020
Cotton_A_18070_CDS 1 165 1 165 PF03398.14 Ist1 Family 1 164 164 190.0 2.8e-56 1 No_clan
Cotton_A_02301_CDS 124 180 124 181 PF04844.13 Ovate Family 1 57 58 83.1 9.8e-24 1 No_clan
Cotton_A_29083_CDS 5 141 5 142 PF00179.26 UQ_con Domain 1 139 140 181.7 5.1e-54 1 CL0208
Cotton_A_09823_CDS 31 133 31 134 PF00011.21 HSP20 Family 1 101 102 88.6 2.4e-25 1 CL0190
Cotton_A_17701_CDS 40 117 39 121 PF02195.18 ParBc Family 2 80 90 62.9 2.5e-17 1 CL0248
Cotton_A_10493_CDS 1 52 1 52 PF07765.12 KIP1 Family 23 74 74 70.3 1.1e-19 1 No_clan
Cotton_A_29404_CDS 78 319 74 320 PF03060.15 NMO Domain 104 330 331 162.8 1.3e-47 1 CL0036
Cotton_A_01290_CDS 168 337 163 340 PF00587.25 tRNA-synt_2b Domain 6 176 179 70.9 1.3e-19 1 CL0040
Cotton_A_01290_CDS 356 435 356 459 PF03129.20 HGTP_anticodon Domain 1 76 94 61.1 8.5e-17 1 CL0458
Cotton_A_01290_CDS 485 551 485 551 PF09180.11 ProRS-C_1 Domain 1 69 69 68.9 3.2e-19 1 No_clan
Cotton_A_23173_CDS 104 203 103 205 PF03168.13 LEA_2 Domain 2 99 101 38.3 1.4e-09 1 CL0159
Cotton_A_17615_CDS 71 186 70 209 PF04727.13 ELMO_CED12 Family 2 121 177 129.7 1.2e-37 1 No_clan
Cotton_A_25375_CDS 502 545 501 545 PF13639.6 zf-RING_2 Domain 2 44 44 50.8 1.6e-13 1 CL0229
Cotton_A_23795_CDS 72 170 70 197 PF00271.31 Helicase_C Family 3 97 111 52.2 6.4e-14 1 CL0023
Cotton_A_23795_CDS 316 414 304 414 PF00069.25 Pkinase Domain 154 264 264 70.9 1e-19 1 CL0016
Cotton_A_25082_CDS 92 495 89 497 PF13520.6 AA_permease_2 Family 4 424 425 138.7 2.3e-40 1 CL0062
Cotton_A_20843_CDS 57 146 56 147 PF00564.24 PB1 Domain 2 83 84 66.0 2.1e-18 1 CL0072
Cotton_A_20418_CDS 147 253 146 253 PF00931.22 NB-ARC Domain 2 112 252 76.5 1.7e-21 1 CL0023
Cotton_A_03924_CDS 105 392 104 392 PF03151.16 TPT Family 2 290 290 367.9 3.6e-110 1 CL0184
Cotton_A_12970_CDS 50 143 49 144 PF12971.7 NAGLU_N Domain 2 81 82 75.7 1.8e-21 1 CL0546
Cotton_A_12970_CDS 160 496 159 497 PF05089.12 NAGLU Domain 2 332 333 471.5 1.2e-141 1 CL0058
Cotton_A_12970_CDS 505 803 505 803 PF12972.7 NAGLU_C Domain 1 266 266 277.5 1.1e-82 1 No_clan
Cotton_A_17465_CDS 72 333 70 340 PF00664.23 ABC_membrane Family 3 269 274 83.0 2.8e-23 1 CL0241
Cotton_A_10948_CDS 37 114 36 114 PF05922.16 Inhibitor_I9 Domain 2 82 82 51.7 1e-13 1 CL0570
Cotton_A_10948_CDS 136 586 135 586 PF00082.22 Peptidase_S8 Domain 2 298 298 162.1 1.7e-47 1 No_clan
Cotton_A_10948_CDS 644 743 643 743 PF17766.1 fn3_6 Domain 2 99 99 82.2 2.4e-23 1 CL0159
Cotton_A_09325_CDS 165 242 165 243 PF03456.18 uDENN Domain 1 65 66 35.9 9.2e-09 1 No_clan
Cotton_A_09325_CDS 560 674 547 675 PF02141.21 DENN Family 68 185 186 89.6 2.4e-25 1 CL0330
Cotton_A_11369_CDS 50 191 50 196 PF01625.21 PMSR Family 1 147 153 146.5 6.5e-43 1 No_clan
Cotton_A_19696_CDS 561 658 561 664 PF06241.12 Castor_Poll_mid Family 1 97 104 143.9 1.4e-42 1 CL0582
Cotton_A_20451_CDS 25 258 24 264 PF12697.7 Abhydrolase_6 Domain 2 214 220 50.8 3.2e-13 1 CL0028
Cotton_A_11164_CDS 204 304 193 307 PF10502.9 Peptidase_S26 Domain 24 133 138 48.6 6.7e-13 1 CL0299
Cotton_A_36776_CDS 306 406 305 409 PF01399.27 PCI Domain 2 102 105 90.6 8e-26 1 CL0123
Cotton_A_07184_CDS 84 501 84 501 PF01373.17 Glyco_hydro_14 Domain 1 402 402 561.0 1.4e-168 1 CL0058
Cotton_A_35669_CDS 20 348 20 348 PF00225.23 Kinesin Domain 1 333 333 372.8 1.3e-111 1 CL0023
Cotton_A_23481_CDS 301 652 299 657 PF03081.15 Exo70 Family 3 370 376 256.4 4.3e-76 1 CL0295
Cotton_A_13050_CDS 3 211 3 212 PF00091.25 Tubulin Domain 1 196 197 234.4 1.3e-69 1 CL0566
Cotton_A_31335_CDS 36 130 35 131 PF01657.17 Stress-antifung Family 2 94 95 77.3 1e-21 1 No_clan
Cotton_A_31335_CDS 181 233 147 234 PF01657.17 Stress-antifung Family 45 94 95 38.8 1.1e-09 1 No_clan
Cotton_A_08460_CDS 302 359 301 359 PF03106.15 WRKY Domain 2 59 59 85.2 2.6e-24 1 CL0274
Cotton_A_04702_CDS 27 58 27 85 PF00786.28 PBD Domain 1 36 59 37.5 2.2e-09 1 No_clan
Cotton_A_04147_CDS 158 436 154 437 PF00664.23 ABC_membrane Family 5 273 274 126.0 2.1e-36 1 CL0241
Cotton_A_04147_CDS 499 648 499 648 PF00005.27 ABC_tran Domain 1 137 137 117.5 5.8e-34 1 CL0023
Cotton_A_22420_CDS 34 67 25 67 PF00400.32 WD40 Repeat 10 37 38 13.8 0.085 1 CL0186
Cotton_A_22420_CDS 75 111 74 111 PF00400.32 WD40 Repeat 2 38 38 16.4 0.013 1 CL0186
Cotton_A_22420_CDS 116 155 116 155 PF00400.32 WD40 Repeat 1 38 38 17.7 0.0048 1 CL0186
Cotton_A_22420_CDS 215 246 208 246 PF00400.32 WD40 Repeat 8 38 38 21.0 0.00044 1 CL0186
Cotton_A_22420_CDS 252 288 250 288 PF00400.32 WD40 Repeat 3 38 38 22.5 0.00015 1 CL0186
Cotton_A_22420_CDS 613 755 595 756 PF11816.8 DUF3337 Family 37 171 172 89.1 3e-25 1 No_clan
Cotton_A_21776_CDS 56 132 55 132 PF03330.18 DPBB_1 Domain 2 83 83 46.7 2.9e-12 1 CL0199
Cotton_A_21776_CDS 145 227 144 227 PF01357.21 Pollen_allerg_1 Domain 2 80 80 74.2 6.3e-21 1 CL0159
Cotton_A_08050_CDS 270 316 260 321 PF00571.28 CBS Domain 7 51 57 32.7 7.5e-08 1 No_clan
Cotton_A_08050_CDS 355 405 350 406 PF00571.28 CBS Domain 6 56 57 46.9 2.7e-12 1 No_clan
Cotton_A_25815_CDS 6 175 6 178 PF03446.15 NAD_binding_2 Domain 1 154 158 159.9 5.4e-47 1 CL0063
Cotton_A_25815_CDS 183 476 183 476 PF00393.19 6PGD Domain 1 289 289 421.0 2.3e-126 1 CL0106
Cotton_A_19436_CDS 5 276 4 276 PF01459.22 Porin_3 Family 2 270 270 229.5 5.1e-68 1 CL0193
Cotton_A_14374_CDS 53 174 49 177 PF00153.27 Mito_carr Family 6 93 97 58.3 5.3e-16 1 No_clan
Cotton_A_14374_CDS 185 285 183 288 PF00153.27 Mito_carr Family 3 93 97 42.7 3.9e-11 1 No_clan
Cotton_A_14374_CDS 301 386 298 390 PF00153.27 Mito_carr Family 7 93 97 69.1 2.2e-19 1 No_clan
Cotton_A_06415_CDS 52 195 23 202 PF00117.28 GATase Domain 32 175 190 57.7 1.2e-15 1 CL0014
Cotton_A_24521_CDS 27 110 27 110 PF00234.22 Tryp_alpha_amyl Family 1 87 87 33.2 5.3e-08 1 CL0482
Cotton_A_38823_CDS 58 110 57 110 PF00847.20 AP2 Domain 2 54 54 54.2 1.3e-14 1 CL0081
Cotton_A_29604_CDS 78 124 78 124 PF12906.7 RINGv Domain 1 48 48 57.9 8.1e-16 1 CL0229
Cotton_A_35019_CDS 191 376 154 388 PF00118.24 Cpn60_TCP1 Family 136 324 491 98.0 4.9e-28 1 No_clan
Cotton_A_29354_CDS 5 330 5 330 PF00009.27 GTP_EFTU Domain 1 194 194 218.2 6.9e-65 1 CL0023
Cotton_A_29354_CDS 380 455 379 456 PF03144.25 GTP_EFTU_D2 Domain 2 73 74 43.0 4.3e-11 1 CL0575
Cotton_A_29354_CDS 475 537 473 544 PF14492.6 EFG_II Domain 4 67 75 45.7 5.3e-12 1 CL0437
Cotton_A_29354_CDS 599 710 593 710 PF03764.18 EFG_IV Domain 11 121 121 107.4 3.7e-31 1 CL0329
Cotton_A_29354_CDS 712 798 712 800 PF00679.24 EFG_C Domain 1 86 89 72.9 1.7e-20 1 CL0437
Cotton_A_05467_CDS 51 145 51 145 PF12327.8 FtsZ_C Domain 1 95 95 98.9 1.5e-28 1 CL0442
Cotton_A_02459_CDS 171 538 171 539 PF03759.13 PRONE Family 1 362 363 624.7 4e-188 1 No_clan
Cotton_A_05199_CDS 106 201 106 206 PF03168.13 LEA_2 Domain 1 99 101 30.4 4.4e-07 1 CL0159
Cotton_A_29470_CDS 43 355 42 356 PF03595.17 SLAC1 Family 2 323 324 152.5 1.6e-44 1 No_clan
Cotton_A_09277_CDS 734 1037 683 1042 PF00176.23 SNF2_N Family 47 348 350 166.4 6.9e-49 1 CL0023
Cotton_A_09277_CDS 1121 1243 1116 1243 PF00271.31 Helicase_C Family 6 111 111 58.5 7.4e-16 1 CL0023
Cotton_A_10822_CDS 11 79 10 80 PF00076.22 RRM_1 Domain 2 69 70 74.8 3.5e-21 1 CL0221
Cotton_A_36070_CDS 1 119 1 119 PF06026.14 Rib_5-P_isom_A Family 62 173 173 70.9 9.3e-20 1 CL0246
Cotton_A_01435_CDS 27 237 27 237 PF00314.17 Thaumatin Domain 1 214 214 272.7 2e-81 1 CL0293
Cotton_A_03336_CDS 3 63 3 63 PF05347.15 Complex1_LYR Family 1 59 59 55.8 3.4e-15 1 CL0491
Cotton_A_28163_CDS 10 51 10 53 PF14990.6 DUF4516 Family 1 44 46 59.4 2e-16 1 No_clan
Cotton_A_18751_CDS 127 546 126 546 PF00854.21 PTR2 Family 2 395 395 345.2 4.2e-103 1 CL0015
Cotton_A_31386_CDS 66 155 66 155 PF13966.6 zf-RVT Domain 1 85 85 61.4 1e-16 1 No_clan
Cotton_A_07067_CDS 21 294 10 294 PF03151.16 TPT Family 13 290 290 75.2 5.4e-21 1 CL0184
Cotton_A_31405_CDS 57 181 57 181 PF14365.6 Neprosin_AP Family 1 118 118 160.9 1.6e-47 1 No_clan
Cotton_A_31405_CDS 194 416 194 416 PF03080.15 Neprosin Family 1 222 222 294.8 3.3e-88 1 No_clan
Cotton_A_32916_CDS 87 142 85 142 PF07716.15 bZIP_2 Family 3 54 54 51.1 1e-13 1 CL0018
Cotton_A_34810_CDS 59 104 59 104 PF12906.7 RINGv Domain 1 48 48 44.6 1.2e-11 1 CL0229
Cotton_A_34810_CDS 110 226 110 226 PF12428.8 DUF3675 Family 1 119 119 135.4 1.3e-39 1 No_clan
Cotton_A_02976_CDS 35 192 35 200 PF00067.22 p450 Domain 1 162 463 88.9 3e-25 1 No_clan
Cotton_A_33486_CDS 40 122 38 122 PF01388.21 ARID Domain 4 90 90 65.7 4.5e-18 1 CL0123
Cotton_A_33486_CDS 266 333 266 333 PF00505.19 HMG_box Domain 1 69 69 57.0 1.9e-15 1 CL0114
Cotton_A_31999_CDS 16 133 5 135 PF13537.6 GATase_7 Domain 10 121 123 53.7 1.8e-14 1 CL0052
Cotton_A_35188_CDS 78 172 78 173 PF02298.17 Cu_bind_like Domain 1 83 84 24.5 2.1e-05 1 CL0026
Cotton_A_11799_CDS 81 319 80 320 PF01177.22 Asp_Glu_race Family 2 223 224 120.6 8.3e-35 1 CL0399
Cotton_A_20278_CDS 78 144 78 145 PF16209.5 PhoLip_ATPase_N Family 1 66 67 86.5 7.3e-25 1 No_clan
Cotton_A_20278_CDS 177 420 173 426 PF00122.20 E1-E2_ATPase Family 6 169 181 34.1 1.9e-08 1 No_clan
Cotton_A_20278_CDS 571 645 545 649 PF13246.6 Cation_ATPase Family 22 85 91 35.9 5.8e-09 1 CL0137
Cotton_A_20278_CDS 909 1148 909 1149 PF16212.5 PhoLip_ATPase_C Family 1 248 249 233.2 3.9e-69 1 No_clan
Cotton_A_23106_CDS 10 121 10 134 PF06094.12 GGACT Family 1 105 121 65.3 7.6e-18 1 CL0278
Cotton_A_25144_CDS 240 440 231 448 PF10250.9 O-FucT Family 56 275 336 63.5 2.7e-17 1 CL0113
Cotton_A_32915_CDS 335 601 334 604 PF00069.25 Pkinase Domain 2 258 264 145.5 1.9e-42 1 CL0016
Cotton_A_29861_CDS 40 342 40 344 PF00248.21 Aldo_ket_red Domain 1 292 294 217.4 2.4e-64 1 No_clan
Cotton_A_22483_CDS 4 26 4 26 PF10584.9 Proteasome_A_N Domain 1 23 23 51.5 5.4e-14 1 CL0052
Cotton_A_22483_CDS 27 199 27 204 PF00227.26 Proteasome Domain 1 176 190 188.8 6.8e-56 1 CL0052
Cotton_A_06966_CDS 705 855 657 855 PF03514.14 GRAS Family 224 374 374 110.1 1.2e-31 1 CL0063
Cotton_A_25641_CDS 3 638 3 640 PF00012.20 HSP70 Family 1 597 599 501.6 2.4e-150 1 CL0108
Cotton_A_37336_CDS 38 454 38 454 PF00450.22 Peptidase_S10 Domain 1 419 419 476.3 1.1e-142 1 CL0028
Cotton_A_22010_CDS 19 103 7 103 PF14368.6 LTP_2 Family 14 97 97 52.3 4.5e-14 1 CL0482
Cotton_A_22849_CDS 1 162 1 163 PF00582.26 Usp Domain 6 140 141 48.9 9.1e-13 1 CL0039
Cotton_A_00342_CDS 15 171 15 171 PF02099.17 Josephin Family 1 163 163 165.6 9.6e-49 1 CL0125
Cotton_A_07455_CDS 11 305 9 311 PF00201.18 UDPGT Family 3 311 499 19.6 0.00032 1 CL0113
Cotton_A_34061_CDS 58 125 56 127 PF04564.15 U-box Domain 4 71 73 63.1 2e-17 1 CL0229
Cotton_A_34089_CDS 42 303 41 304 PF02309.16 AUX_IAA Family 2 209 237 178.5 1.9e-52 1 CL0072
Cotton_A_24003_CDS 3 38 1 42 PF12937.7 F-box-like Domain 3 38 48 25.6 8.1e-06 1 CL0271
Cotton_A_24003_CDS 220 334 216 375 PF07734.13 FBA_1 Family 6 124 164 23.5 4.3e-05 1 CL0162
Cotton_A_14466_CDS 113 509 111 509 PF05686.12 Glyco_transf_90 Family 3 396 396 634.2 7.8e-191 1 CL0113
Cotton_A_27963_CDS 55 163 55 166 PF14226.6 DIOX_N Family 1 116 118 82.0 5.4e-23 1 CL0029
Cotton_A_30500_CDS 62 193 60 193 PF02469.22 Fasciclin Domain 3 128 128 84.1 9.4e-24 1 No_clan
Cotton_A_12358_CDS 61 307 60 307 PF00109.26 ketoacyl-synt Domain 2 253 253 199.5 6.6e-59 1 CL0046
Cotton_A_12358_CDS 316 427 315 428 PF02801.22 Ketoacyl-synt_C Domain 2 116 118 113.3 6.3e-33 1 CL0046
Cotton_A_27106_CDS 31 77 22 77 PF07333.12 SLR1-BP Domain 11 58 58 25.3 1.6e-05 1 CL0054
Cotton_A_16551_CDS 82 111 82 113 PF14383.6 VARLMGL Domain 1 30 32 53.9 9.3e-15 1 No_clan
Cotton_A_16551_CDS 738 885 738 885 PF14309.6 DUF4378 Family 1 165 165 129.6 1.4e-37 1 No_clan
Cotton_A_30076_CDS 121 423 119 423 PF03595.17 SLAC1 Family 3 324 324 162.8 1.2e-47 1 No_clan
Cotton_A_17020_CDS 193 549 191 549 PF03514.14 GRAS Family 3 374 374 293.4 2.3e-87 1 CL0063
Cotton_A_30555_CDS 66 118 65 120 PF00013.29 KH_1 Domain 2 55 66 52.0 4.6e-14 1 CL0007
Cotton_A_30555_CDS 158 225 157 226 PF00013.29 KH_1 Domain 2 65 66 55.5 3.7e-15 1 CL0007
Cotton_A_30555_CDS 336 391 336 398 PF00013.29 KH_1 Domain 1 57 66 32.5 5.4e-08 1 CL0007
Cotton_A_17320_CDS 26 127 26 131 PF01277.17 Oleosin Family 1 102 113 114.3 2.3e-33 1 No_clan
Cotton_A_28880_CDS 84 495 75 511 PF00067.22 p450 Domain 23 445 463 293.9 2e-87 1 No_clan
Cotton_A_02168_CDS 62 152 61 153 PF01241.18 PSI_PSAK Family 2 69 70 77.6 5.2e-22 1 No_clan
Cotton_A_29335_CDS 54 240 54 242 PF02492.19 cobW Domain 1 175 177 187.6 1.5e-55 1 CL0023
Cotton_A_29335_CDS 299 393 299 393 PF07683.14 CobW_C Domain 1 94 94 81.0 4.5e-23 1 No_clan
Cotton_A_28904_CDS 33 117 33 121 PF01190.17 Pollen_Ole_e_I Family 1 93 99 68.2 6.2e-19 1 CL0287
Cotton_A_04886_CDS 26 74 26 74 PF00189.20 Ribosomal_S3_C Domain 1 49 83 55.3 7.2e-15 1 No_clan
Cotton_A_04384_CDS 6 126 3 156 PF07468.11 Agglutinin Domain 4 118 153 48.2 1.3e-12 1 CL0066
Cotton_A_04384_CDS 165 270 160 290 PF07468.11 Agglutinin Domain 7 127 153 42.1 1e-10 1 CL0066
Cotton_A_39596_CDS 15 93 11 104 PF02519.14 Auxin_inducible Family 3 74 90 59.9 2.1e-16 1 No_clan
Cotton_A_11455_CDS 235 429 213 430 PF00566.18 RabGAP-TBC Family 42 214 215 127.3 6.2e-37 1 No_clan
Cotton_A_27359_CDS 154 196 149 196 PF00010.26 HLH Domain 8 53 53 31.1 1.7e-07 1 No_clan
Cotton_A_03486_CDS 238 292 238 292 PF13867.6 SAP30_Sin3_bdg Family 1 54 54 66.0 2.7e-18 1 No_clan
Cotton_A_13848_CDS 45 147 45 148 PF05916.11 Sld5 Family 1 108 109 46.1 5.7e-12 1 No_clan
Cotton_A_13864_CDS 17 379 17 382 PF06068.13 TIP49 Domain 1 348 351 548.0 9.7e-165 1 CL0023
Cotton_A_13864_CDS 387 452 387 452 PF17856.1 TIP49_C Domain 1 66 66 65.2 4.2e-18 1 CL0671
Cotton_A_39746_CDS 23 169 2 169 PF00685.27 Sulfotransfer_1 Domain 130 267 267 122.1 2.8e-35 1 CL0023
Cotton_A_26319_CDS 21 72 15 72 PF00403.26 HMA Domain 8 62 62 46.4 3.9e-12 1 No_clan
Cotton_A_28548_CDS 8 47 6 47 PF18511.1 F-box_5 Domain 3 42 42 64.2 5.7e-18 1 CL0271
Cotton_A_28548_CDS 66 112 66 112 PF18791.1 Transp_inhibit Family 1 47 47 88.6 1.3e-25 1 No_clan
Cotton_A_25631_CDS 272 352 271 352 PF16760.5 CBM53 Family 2 81 81 60.4 1.9e-16 1 CL0576
Cotton_A_25631_CDS 446 532 446 533 PF16760.5 CBM53 Family 1 80 81 65.2 6.2e-18 1 CL0576
Cotton_A_25631_CDS 608 693 608 693 PF16760.5 CBM53 Family 1 81 81 62.8 3.5e-17 1 CL0576
Cotton_A_25631_CDS 704 895 704 906 PF08323.11 Glyco_transf_5 Domain 1 232 244 162.9 1e-47 1 CL0113
Cotton_A_30112_CDS 469 641 468 645 PF00270.29 DEAD Domain 2 172 176 91.3 5.7e-26 1 CL0023
Cotton_A_30112_CDS 710 818 702 819 PF00271.31 Helicase_C Family 8 110 111 39.5 5.7e-10 1 CL0023
Cotton_A_23402_CDS 18 83 15 102 PF02880.16 PGM_PMM_III Domain 41 98 114 26.4 6.3e-06 1 No_clan
Cotton_A_01965_CDS 137 187 136 188 PF00847.20 AP2 Domain 2 53 54 53.4 2.1e-14 1 CL0081
Cotton_A_13601_CDS 288 358 287 378 PF01926.23 MMR_HSR1 Family 2 61 114 30.2 3.9e-07 1 CL0023
Cotton_A_27162_CDS 105 360 105 360 PF08145.12 BOP1NT Domain 1 260 260 339.4 1.8e-101 1 No_clan
Cotton_A_27162_CDS 363 398 361 399 PF00400.32 WD40 Repeat 3 37 38 38.7 1.1e-09 1 CL0186
Cotton_A_27162_CDS 610 646 609 647 PF00400.32 WD40 Repeat 2 37 38 23.5 7.3e-05 1 CL0186
Cotton_A_27162_CDS 662 701 660 702 PF00400.32 WD40 Repeat 3 37 38 21.1 0.0004 1 CL0186
Cotton_A_12122_CDS 45 237 44 240 PF00149.28 Metallophos Domain 2 201 204 123.1 2e-35 1 CL0163
Cotton_A_08811_CDS 89 163 82 172 PF01453.24 B_lectin Domain 13 91 105 39.1 8.4e-10 1 No_clan
Cotton_A_08811_CDS 231 311 207 313 PF00954.20 S_locus_glycop Domain 36 109 111 32.1 1.3e-07 1 No_clan
Cotton_A_08811_CDS 499 766 497 768 PF00069.25 Pkinase Domain 4 260 264 164.5 2.9e-48 1 CL0016
Cotton_A_40283_CDS 1 298 1 299 PF04005.12 Hus1 Family 1 291 292 244.6 1.2e-72 1 CL0060
Cotton_A_14193_CDS 58 162 56 181 PF04757.14 Pex2_Pex12 Family 3 100 225 53.4 2.6e-14 1 No_clan
Cotton_A_18646_CDS 12 40 11 40 PF01535.20 PPR Family 3 31 31 15.5 0.015 1 CL0020
Cotton_A_18646_CDS 143 176 143 176 PF12854.7 PPR_1 Repeat 1 34 34 50.2 1.4e-13 1 CL0020
Cotton_A_18646_CDS 223 251 222 251 PF01535.20 PPR Family 3 31 31 20.1 0.0005 1 CL0020
Cotton_A_18646_CDS 253 302 253 302 PF13041.6 PPR_2 Repeat 1 50 50 58.7 4.8e-16 1 CL0020
Cotton_A_18646_CDS 324 370 323 372 PF13041.6 PPR_2 Repeat 2 48 50 70.8 7.8e-20 1 CL0020
Cotton_A_18646_CDS 391 421 389 422 PF12854.7 PPR_1 Repeat 3 33 34 33.0 3.5e-08 1 CL0020
Cotton_A_18646_CDS 428 475 428 477 PF13041.6 PPR_2 Repeat 1 48 50 64.2 8.8e-18 1 CL0020
Cotton_A_03758_CDS 63 362 63 363 PF05212.12 DUF707 Family 1 295 296 480.7 1.6e-144 1 No_clan
Cotton_A_15585_CDS 29 284 29 284 PF00069.25 Pkinase Domain 1 264 264 236.6 3e-70 1 CL0016
Cotton_A_15585_CDS 323 381 323 382 PF03822.14 NAF Domain 1 53 54 62.0 4.4e-17 1 CL0573
Cotton_A_00447_CDS 80 219 80 219 PF04749.17 PLAC8 Family 1 99 99 65.0 9.7e-18 1 No_clan
Cotton_A_31394_CDS 112 473 111 473 PF00155.21 Aminotran_1_2 Domain 2 363 363 156.7 8.8e-46 1 CL0061
Cotton_A_29414_CDS 67 104 67 112 PF12799.7 LRR_4 Repeat 1 40 44 28.3 1.6e-06 1 CL0022
Cotton_A_29414_CDS 222 283 221 283 PF13855.6 LRR_8 Repeat 2 61 61 28.9 7.1e-07 1 CL0022
Cotton_A_29414_CDS 336 391 335 391 PF13855.6 LRR_8 Repeat 6 61 61 32.7 4.5e-08 1 CL0022
Cotton_A_19810_CDS 112 384 108 384 PF07714.17 Pkinase_Tyr Domain 6 259 259 157.7 3.3e-46 1 CL0016
Cotton_A_00670_CDS 24 92 4 93 PF02519.14 Auxin_inducible Family 22 89 90 91.6 2.6e-26 1 No_clan
Cotton_A_09528_CDS 122 147 122 148 PF13912.6 zf-C2H2_6 Domain 1 26 27 49.1 3.8e-13 1 CL0361
Cotton_A_09528_CDS 201 225 200 226 PF13912.6 zf-C2H2_6 Domain 2 26 27 44.4 1.1e-11 1 CL0361
Cotton_A_15070_CDS 51 323 51 329 PF00732.19 GMC_oxred_N Domain 1 290 296 107.4 8.8e-31 1 CL0063
Cotton_A_15070_CDS 396 537 396 539 PF05199.13 GMC_oxred_C Domain 1 142 144 93.9 1.3e-26 1 No_clan
Cotton_A_35983_CDS 48 161 48 162 PF14226.6 DIOX_N Family 1 117 118 87.0 1.5e-24 1 CL0029
Cotton_A_35983_CDS 212 308 211 308 PF03171.20 2OG-FeII_Oxy Domain 4 101 101 86.0 2e-24 1 CL0029
Cotton_A_15988_CDS 95 216 89 235 PF13522.6 GATase_6 Domain 7 110 134 55.3 7.4e-15 1 CL0052
Cotton_A_15988_CDS 375 502 374 503 PF01380.22 SIS Domain 2 130 131 108.3 2.4e-31 1 CL0067
Cotton_A_15988_CDS 546 677 545 678 PF01380.22 SIS Domain 2 130 131 73.7 1.2e-20 1 CL0067
Cotton_A_09145_CDS 382 529 382 542 PF00069.25 Pkinase Domain 1 153 264 88.8 3.7e-25 1 CL0016
Cotton_A_09145_CDS 742 882 716 882 PF00069.25 Pkinase Domain 154 264 264 67.6 1.1e-18 1 CL0016
Cotton_A_36832_CDS 29 99 29 99 PF00076.22 RRM_1 Domain 1 70 70 59.7 1.8e-16 1 CL0221
Cotton_A_36832_CDS 117 185 117 186 PF00076.22 RRM_1 Domain 1 69 70 71.9 2.8e-20 1 CL0221
Cotton_A_36832_CDS 208 276 208 277 PF00076.22 RRM_1 Domain 1 69 70 75.7 1.8e-21 1 CL0221
Cotton_A_36832_CDS 311 379 311 380 PF00076.22 RRM_1 Domain 1 69 70 67.3 7.5e-19 1 CL0221
Cotton_A_36832_CDS 597 641 577 641 PF00658.18 PABP Family 24 68 68 58.0 7.7e-16 1 No_clan
Cotton_A_21567_CDS 27 387 27 387 PF05623.12 DUF789 Family 1 294 294 226.3 6.6e-67 1 No_clan
Cotton_A_16129_CDS 23 80 20 81 PF13499.6 EF-hand_7 Domain 6 69 71 45.9 5.6e-12 1 CL0220
Cotton_A_16129_CDS 106 151 105 152 PF13833.6 EF-hand_8 Domain 2 48 55 32.8 4.6e-08 1 CL0220
Cotton_A_21665_CDS 146 377 143 378 PF00931.22 NB-ARC Domain 4 251 252 168.8 1.2e-49 1 CL0023
Cotton_A_21665_CDS 514 572 514 573 PF13855.6 LRR_8 Repeat 1 59 61 33.4 2.8e-08 1 CL0022
Cotton_A_29328_CDS 7 182 6 182 PF13967.6 RSN1_TM Family 2 156 156 124.2 3.8e-36 1 No_clan
Cotton_A_29328_CDS 203 365 203 365 PF14703.6 PHM7_cyt Domain 1 176 176 151.7 2.4e-44 1 CL0221
Cotton_A_29328_CDS 376 647 376 648 PF02714.15 RSN1_7TM Family 1 273 274 261.9 6.1e-78 1 CL0416
Cotton_A_04961_CDS 27 69 26 70 PF00249.31 Myb_DNA-binding Domain 2 44 46 42.6 5.2e-11 1 CL0123
Cotton_A_37942_CDS 149 383 145 385 PF00931.22 NB-ARC Domain 5 250 252 174.5 2.2e-51 1 CL0023
Cotton_A_37942_CDS 526 578 524 581 PF13855.6 LRR_8 Repeat 3 56 61 34.0 1.8e-08 1 CL0022
Cotton_A_05709_CDS 56 92 54 92 PF00400.32 WD40 Repeat 3 38 38 13.5 0.1 1 CL0186
Cotton_A_05709_CDS 159 209 151 215 PF12894.7 ANAPC4_WD40 Repeat 35 86 92 28.1 1.9e-06 1 CL0186
Cotton_A_05709_CDS 244 276 239 276 PF00400.32 WD40 Repeat 7 38 38 32.5 1.1e-07 1 CL0186
Cotton_A_11450_CDS 6 118 6 123 PF16884.5 ADH_N_2 Family 1 104 108 70.3 1.1e-19 1 CL0296
Cotton_A_11450_CDS 169 290 168 301 PF00107.26 ADH_zinc_N Family 2 117 130 77.2 1.1e-21 1 CL0063
Cotton_A_14458_CDS 563 635 563 635 PF00575.23 S1 Domain 1 75 75 42.7 5.3e-11 1 CL0021
Cotton_A_11632_CDS 38 73 37 74 PF03638.15 TCR Domain 2 37 38 38.0 1.5e-09 1 No_clan
Cotton_A_32076_CDS 111 207 111 207 PF01196.19 Ribosomal_L17 Family 1 94 94 116.7 6.7e-34 1 No_clan
Cotton_A_12616_CDS 116 298 98 320 PF03661.13 UPF0121 Family 18 199 241 58.9 4.9e-16 1 No_clan
Cotton_A_17769_CDS 116 156 115 161 PF12937.7 F-box-like Domain 2 43 48 42.8 3.4e-11 1 CL0271
Cotton_A_21656_CDS 66 172 66 172 PF01453.24 B_lectin Domain 1 105 105 132.3 8.4e-39 1 No_clan
Cotton_A_21656_CDS 204 311 204 313 PF00954.20 S_locus_glycop Domain 1 109 111 94.2 7e-27 1 No_clan
Cotton_A_21656_CDS 336 402 336 402 PF08276.11 PAN_2 Domain 1 67 67 71.1 6e-20 1 CL0168
Cotton_A_21656_CDS 495 717 492 786 PF07714.17 Pkinase_Tyr Domain 5 204 259 148.3 2.4e-43 1 CL0016
Cotton_A_21656_CDS 792 834 790 834 PF11883.8 DUF3403 Family 4 46 46 33.5 3.2e-08 1 No_clan
Cotton_A_02577_CDS 497 551 496 551 PF00385.24 Chromo Domain 2 54 54 49.5 2.9e-13 1 CL0049
Cotton_A_02577_CDS 605 876 588 877 PF00176.23 SNF2_N Family 54 349 350 215.5 8.4e-64 1 CL0023
Cotton_A_02577_CDS 905 1018 904 1018 PF00271.31 Helicase_C Family 2 111 111 73.7 1.4e-20 1 CL0023
Cotton_A_02577_CDS 1485 1578 1482 1578 PF13907.6 DUF4208 Domain 4 96 96 60.0 2.2e-16 1 No_clan
Cotton_A_36877_CDS 43 131 43 137 PF00251.20 Glyco_hydro_32N Domain 1 79 305 107.7 8.3e-31 1 CL0143
Cotton_A_22099_CDS 56 98 55 98 PF13639.6 zf-RING_2 Domain 2 44 44 53.8 1.7e-14 1 CL0229
Cotton_A_26990_CDS 126 281 117 284 PF10561.9 UPF0565 Family 164 294 299 37.9 1.2e-09 1 No_clan
Cotton_A_12228_CDS 29 83 27 84 PF00403.26 HMA Domain 3 61 62 53.9 1.8e-14 1 No_clan
Cotton_A_11654_CDS 31 172 30 181 PF00106.25 adh_short Domain 2 139 195 87.7 6.6e-25 1 CL0063
Cotton_A_23808_CDS 11 202 9 221 PF01470.17 Peptidase_C15 Domain 3 171 202 54.7 1.4e-14 1 CL0379
Cotton_A_25255_CDS 8 67 8 76 PF00076.22 RRM_1 Domain 1 59 70 54.9 5.9e-15 1 CL0221
Cotton_A_25255_CDS 121 179 121 190 PF00076.22 RRM_1 Domain 1 59 70 58.8 3.4e-16 1 CL0221
Cotton_A_15745_CDS 10 190 2 192 PF01031.20 Dynamin_M Family 108 283 285 91.4 5.5e-26 1 No_clan
Cotton_A_15745_CDS 238 324 235 325 PF02212.18 GED Family 6 91 92 36.8 3.2e-09 1 No_clan
Cotton_A_25406_CDS 8 101 7 102 PF01158.18 Ribosomal_L36e Family 2 95 96 145.3 4.9e-43 1 No_clan
Cotton_A_14858_CDS 29 88 29 88 PF02704.14 GASA Family 1 60 60 83.6 7.9e-24 1 No_clan
Cotton_A_05604_CDS 5 150 2 151 PF00407.19 Bet_v_1 Domain 4 150 151 145.0 1.5e-42 1 CL0209
Cotton_A_28042_CDS 9 145 9 146 PF00179.26 UQ_con Domain 1 139 140 165.1 7.1e-49 1 CL0208
Cotton_A_04366_CDS 69 663 69 664 PF00012.20 HSP70 Family 1 598 599 873.9 4.5e-263 1 CL0108
Cotton_A_07974_CDS 133 232 133 232 PF08414.10 NADPH_Ox Family 1 101 101 128.2 1.3e-37 1 CL0220
Cotton_A_07974_CDS 392 548 391 548 PF01794.19 Ferric_reduct Family 2 125 125 75.5 3.8e-21 1 CL0328
Cotton_A_07974_CDS 590 707 589 708 PF08022.12 FAD_binding_8 Domain 2 108 109 114.6 2.1e-33 1 CL0076
Cotton_A_07974_CDS 714 897 714 898 PF08030.12 NAD_binding_6 Domain 1 155 156 178.0 1.4e-52 1 CL0091
Cotton_A_05242_CDS 111 183 110 184 PF00364.22 Biotin_lipoyl Domain 2 72 73 68.2 4.1e-19 1 CL0105
Cotton_A_05242_CDS 245 279 244 279 PF02817.17 E3_binding Family 2 36 36 55.9 3.8e-15 1 No_clan
Cotton_A_05242_CDS 306 536 303 536 PF00198.23 2-oxoacid_dh Domain 4 233 233 261.8 5e-78 1 CL0149
Cotton_A_01750_CDS 13 268 13 268 PF00069.25 Pkinase Domain 1 264 264 237.7 1.4e-70 1 CL0016
Cotton_A_01750_CDS 311 370 311 370 PF03822.14 NAF Domain 1 54 54 81.3 4.1e-23 1 CL0573
Cotton_A_34832_CDS 9 137 6 137 PF04535.12 DUF588 Domain 4 150 150 80.9 7.7e-23 1 CL0396
Cotton_A_00266_CDS 1 70 1 70 PF08583.10 Cmc1 Family 1 69 69 56.8 1.7e-15 1 CL0351
Cotton_A_39630_CDS 34 69 32 76 PF00646.33 F-box Domain 4 39 48 20.7 0.00028 1 CL0271
Cotton_A_34772_CDS 437 476 437 477 PF00514.23 Arm Repeat 1 40 41 20.7 0.00031 1 CL0020
Cotton_A_18029_CDS 209 535 209 536 PF00225.23 Kinesin Domain 1 332 333 307.1 1.3e-91 1 CL0023
Cotton_A_21673_CDS 33 341 30 341 PF03291.16 Pox_MCEL Family 4 333 333 333.2 1.6e-99 1 CL0063
Cotton_A_29200_CDS 40 184 38 185 PF00005.27 ABC_tran Domain 3 136 137 51.1 1.9e-13 1 CL0023
Cotton_A_36000_CDS 92 396 92 398 PF13393.6 tRNA-synt_His Domain 1 304 310 152.1 2.1e-44 1 CL0040
Cotton_A_36000_CDS 425 503 418 504 PF03129.20 HGTP_anticodon Domain 6 87 94 37.3 2.3e-09 1 CL0458
Cotton_A_23882_CDS 2 323 2 666 PF02463.19 SMC_N Domain 1 136 220 111.9 2.9e-32 1 CL0023
Cotton_A_23882_CDS 519 638 517 638 PF06470.13 SMC_hinge Domain 3 117 117 82.8 2.2e-23 1 No_clan
Cotton_A_23882_CDS 857 1161 777 1165 PF02463.19 SMC_N Domain 77 215 220 100.1 1.2e-28 1 CL0023
Cotton_A_30467_CDS 18 145 15 145 PF00080.20 Sod_Cu Domain 5 142 142 128.5 2e-37 1 No_clan
Cotton_A_18177_CDS 7 41 6 41 PF14369.6 zinc_ribbon_9 Domain 2 35 35 53.0 3e-14 1 CL0167
Cotton_A_18177_CDS 189 231 188 231 PF13639.6 zf-RING_2 Domain 2 44 44 42.3 7.2e-11 1 CL0229
Cotton_A_18177_CDS 255 360 255 361 PF06547.12 DUF1117 Family 1 113 113 130.6 3.6e-38 1 No_clan
Cotton_A_07163_CDS 60 308 58 309 PF00378.20 ECH_1 Domain 3 250 251 225.9 4.8e-67 1 CL0127
Cotton_A_11637_CDS 26 66 25 66 PF08263.12 LRRNT_2 Family 2 41 41 39.8 4.1e-10 1 No_clan
Cotton_A_11637_CDS 366 632 362 633 PF07714.17 Pkinase_Tyr Domain 6 258 259 59.7 2.5e-16 1 CL0016
Cotton_A_08584_CDS 36 96 18 99 PF15511.6 CENP-T_C Domain 19 79 108 34.4 1.8e-08 1 CL0012
Cotton_A_23401_CDS 52 111 2 111 PF00583.25 Acetyltransf_1 Family 42 91 117 25.9 9e-06 1 CL0257
Cotton_A_40270_CDS 45 133 41 136 PF00085.20 Thioredoxin Domain 12 100 103 92.1 1.8e-26 1 CL0172
Cotton_A_40270_CDS 164 263 162 265 PF00085.20 Thioredoxin Domain 3 101 103 98.8 1.5e-28 1 CL0172
Cotton_A_01318_CDS 6 54 2 68 PF01429.19 MBD Domain 7 58 77 44.9 6.9e-12 1 CL0081
Cotton_A_01318_CDS 80 128 71 169 PF01429.19 MBD Domain 10 58 77 24.3 1.9e-05 1 CL0081
Cotton_A_15006_CDS 399 486 398 500 PF13086.6 AAA_11 Domain 2 97 261 56.4 3.6e-15 1 CL0023
Cotton_A_15006_CDS 514 587 511 587 PF13086.6 AAA_11 Domain 192 261 261 47.7 1.7e-12 1 CL0023
Cotton_A_15006_CDS 595 799 594 800 PF13087.6 AAA_12 Domain 2 198 199 167.4 2.8e-49 1 CL0023
Cotton_A_27056_CDS 16 97 5 107 PF02362.21 B3 Family 14 90 101 45.3 6e-12 1 CL0405
Cotton_A_34069_CDS 32 80 31 85 PF00646.33 F-box Domain 2 42 48 28.1 1.4e-06 1 CL0271
Cotton_A_34069_CDS 96 371 96 371 PF01167.18 Tub Domain 1 241 241 305.7 2.6e-91 1 CL0395
Cotton_A_02870_CDS 26 266 26 268 PF00573.22 Ribosomal_L4 Family 1 190 192 134.6 3.3e-39 1 No_clan
Cotton_A_02870_CDS 280 353 280 354 PF14374.6 Ribos_L4_asso_C Domain 1 75 76 99.9 6.2e-29 1 No_clan
Cotton_A_32776_CDS 1 134 1 134 PF00421.19 PSII Family 267 396 507 205.7 1.2e-60 1 No_clan
Cotton_A_15569_CDS 95 257 95 259 PF00071.22 Ras Domain 1 160 162 77.4 8.7e-22 1 CL0023
Cotton_A_23522_CDS 157 216 156 222 PF00076.22 RRM_1 Domain 2 64 70 21.0 0.00022 1 CL0221
Cotton_A_14178_CDS 56 120 56 122 PF00366.20 Ribosomal_S17 Domain 1 65 68 84.4 4.4e-24 1 CL0021
Cotton_A_01358_CDS 27 334 25 335 PF00294.24 PfkB Family 3 301 302 268.4 7.7e-80 1 CL0118
Cotton_A_15673_CDS 72 123 72 123 PF08127.13 Propeptide_C1 Motif 1 40 40 30.1 3.2e-07 1 No_clan
Cotton_A_15673_CDS 162 200 153 203 PF00112.23 Peptidase_C1 Domain 33 71 218 21.6 0.00019 1 CL0125
Cotton_A_18954_CDS 25 102 25 103 PF05922.16 Inhibitor_I9 Domain 1 81 82 50.0 3.5e-13 1 CL0570
Cotton_A_18954_CDS 128 590 128 607 PF00082.22 Peptidase_S8 Domain 1 285 298 162.7 1.1e-47 1 No_clan
Cotton_A_18954_CDS 368 457 366 457 PF02225.22 PA Family 3 89 89 39.7 3.7e-10 1 CL0364
Cotton_A_18954_CDS 662 766 662 766 PF17766.1 fn3_6 Domain 1 99 99 97.3 4.5e-28 1 CL0159
Cotton_A_29624_CDS 174 298 173 298 PF00549.19 Ligase_CoA Domain 2 153 153 48.2 9.6e-13 1 CL0506
Cotton_A_29624_CDS 398 596 393 599 PF00285.21 Citrate_synt Domain 167 357 361 60.6 1.3e-16 1 No_clan
Cotton_A_19561_CDS 64 110 59 110 PF04570.14 zf-FLZ Domain 8 54 54 56.4 1.5e-15 1 CL0175
Cotton_A_28798_CDS 55 179 55 179 PF00782.20 DSPc Domain 1 133 133 88.9 2.5e-25 1 CL0031
Cotton_A_16957_CDS 85 294 84 295 PF01370.21 Epimerase Family 5 239 241 30.7 2.1e-07 1 CL0063
Cotton_A_24882_CDS 1 100 1 101 PF03936.16 Terpene_synth_C Domain 167 266 267 106.6 1.4e-30 1 CL0613
Cotton_A_18314_CDS 227 283 227 283 PF03106.15 WRKY Domain 1 59 59 88.0 3.4e-25 1 CL0274
Cotton_A_18314_CDS 401 458 401 458 PF03106.15 WRKY Domain 1 59 59 90.9 4.4e-26 1 CL0274
Cotton_A_39530_CDS 55 793 55 799 PF05879.12 RHD3 Family 1 738 743 1004.8 2.2e-302 1 CL0023
Cotton_A_32253_CDS 107 170 106 170 PF00808.23 CBFD_NFYB_HMF Domain 2 65 65 73.8 9.7e-21 1 CL0012
Cotton_A_00296_CDS 33 175 31 175 PF10604.9 Polyketide_cyc2 Family 3 143 143 75.5 4.9e-21 1 CL0209
Cotton_A_12715_CDS 104 167 103 167 PF00808.23 CBFD_NFYB_HMF Domain 2 65 65 74.8 4.9e-21 1 CL0012
Cotton_A_05153_CDS 103 279 94 279 PF00544.19 Pec_lyase_C Domain 37 211 211 88.8 3.7e-25 1 CL0268
Cotton_A_09153_CDS 81 356 76 356 PF07714.17 Pkinase_Tyr Domain 6 259 259 157.1 5e-46 1 CL0016
Cotton_A_16764_CDS 17 138 17 139 PF03463.15 eRF1_1 Domain 1 128 129 72.9 2.3e-20 1 CL0267
Cotton_A_16764_CDS 144 277 144 278 PF03464.15 eRF1_2 Domain 1 132 133 146.1 7e-43 1 CL0267
Cotton_A_16764_CDS 281 418 281 418 PF03465.15 eRF1_3 Domain 1 113 113 126.4 6.9e-37 1 CL0101
Cotton_A_24698_CDS 2 403 1 407 PF00067.22 p450 Domain 55 459 463 289.7 3.6e-86 1 No_clan
Cotton_A_25003_CDS 53 102 52 102 PF00010.26 HLH Domain 2 53 53 49.3 3.4e-13 1 No_clan
Cotton_A_26615_CDS 26 128 25 130 PF05922.16 Inhibitor_I9 Domain 2 80 82 71.7 6e-20 1 CL0570
Cotton_A_26615_CDS 155 644 155 667 PF00082.22 Peptidase_S8 Domain 1 285 298 150.9 4.6e-44 1 No_clan
Cotton_A_26615_CDS 413 494 398 497 PF02225.22 PA Family 10 82 89 25.7 8.7e-06 1 CL0364
Cotton_A_26615_CDS 720 812 720 813 PF17766.1 fn3_6 Domain 1 98 99 59.0 4e-16 1 CL0159
Cotton_A_15489_CDS 102 395 102 395 PF14234.6 DUF4336 Family 1 318 318 349.1 2.2e-104 1 No_clan
Cotton_A_26408_CDS 24 67 24 69 PF00249.31 Myb_DNA-binding Domain 1 44 46 49.8 2.9e-13 1 CL0123
Cotton_A_33312_CDS 300 391 296 392 PF10551.9 MULE Domain 6 95 96 28.6 1.5e-06 1 CL0219
Cotton_A_03218_CDS 103 172 102 172 PF00690.26 Cation_ATPase_N Domain 2 69 69 48.0 7.5e-13 1 No_clan
Cotton_A_03218_CDS 224 426 221 428 PF00122.20 E1-E2_ATPase Family 5 179 181 140.8 3.4e-41 1 No_clan
Cotton_A_03218_CDS 446 773 444 773 PF00702.26 Hydrolase Domain 3 210 210 62.6 6.3e-17 1 CL0137
Cotton_A_03218_CDS 844 1014 843 1014 PF00689.21 Cation_ATPase_C Family 2 182 182 152.3 1.2e-44 1 No_clan
Cotton_A_08618_CDS 60 218 59 218 PF04759.13 DUF617 Family 2 163 163 225.5 3.5e-67 1 No_clan
Cotton_A_32766_CDS 49 234 49 234 PF14215.6 bHLH-MYC_N Family 1 175 175 154.1 4.5e-45 1 CL0161
Cotton_A_32766_CDS 358 404 356 404 PF00010.26 HLH Domain 4 53 53 41.2 1.2e-10 1 No_clan
Cotton_A_26433_CDS 37 114 17 115 PF04030.14 ALO Family 185 259 260 27.0 3.5e-06 1 CL0277
Cotton_A_30197_CDS 62 97 62 97 PF04922.12 DIE2_ALG10 Family 1 36 396 48.3 8.9e-13 1 CL0111
Cotton_A_24919_CDS 122 436 122 438 PF01546.28 Peptidase_M20 Family 1 205 207 109.8 1.4e-31 1 CL0035
Cotton_A_24919_CDS 231 329 229 333 PF07687.14 M20_dimer Domain 5 105 109 43.9 1.9e-11 1 No_clan
Cotton_A_12537_CDS 88 492 76 512 PF00067.22 p450 Domain 26 439 463 289.6 3.9e-86 1 No_clan
Cotton_A_30779_CDS 1 46 1 66 PF18052.1 Rx_N Domain 37 82 93 31.0 2.2e-07 1 No_clan
Cotton_A_30779_CDS 130 228 128 232 PF00931.22 NB-ARC Domain 3 104 252 65.0 5.9e-18 1 CL0023
Cotton_A_30779_CDS 235 283 230 301 PF00931.22 NB-ARC Domain 182 229 252 31.7 8.6e-08 1 CL0023
Cotton_A_06202_CDS 235 512 235 512 PF00069.25 Pkinase Domain 1 264 264 218.7 8.9e-65 1 CL0016
Cotton_A_15264_CDS 1570 1884 1529 1898 PF00632.25 HECT Domain 35 287 307 233.5 3.9e-69 1 CL0552
Cotton_A_19238_CDS 10 106 10 108 PF03195.14 LOB Family 1 97 99 142.0 7.3e-42 1 No_clan
Cotton_A_12017_CDS 22 155 14 157 PF00892.20 EamA Family 10 135 137 47.4 2e-12 1 CL0184
Cotton_A_12017_CDS 190 328 188 329 PF00892.20 EamA Family 3 136 137 41.9 1e-10 1 CL0184
Cotton_A_18305_CDS 118 423 116 430 PF00520.31 Ion_trans Family 4 234 245 47.5 1.3e-12 1 CL0030
Cotton_A_18305_CDS 525 613 523 616 PF00027.29 cNMP_binding Domain 3 83 89 28.4 1.2e-06 1 CL0029
Cotton_A_04316_CDS 133 193 133 193 PF03106.15 WRKY Domain 1 59 59 86.3 1.2e-24 1 CL0274
Cotton_A_22950_CDS 108 148 89 148 PF13855.6 LRR_8 Repeat 21 61 61 29.0 6.6e-07 1 CL0022
Cotton_A_22950_CDS 153 196 152 196 PF13855.6 LRR_8 Repeat 18 61 61 27.5 1.9e-06 1 CL0022
Cotton_A_22950_CDS 376 565 374 565 PF11721.8 Malectin Domain 3 165 165 102.8 2e-29 1 CL0202
Cotton_A_22950_CDS 645 914 643 914 PF07714.17 Pkinase_Tyr Domain 3 259 259 166.8 5.3e-49 1 CL0016
Cotton_A_03833_CDS 38 90 38 91 PF13833.6 EF-hand_8 Domain 1 54 55 60.4 1.1e-16 1 CL0220
Cotton_A_13874_CDS 5 258 3 262 PF04811.15 Sec23_trunk Domain 3 239 243 93.8 1.2e-26 1 CL0128
Cotton_A_15581_CDS 71 181 71 190 PF11712.8 Vma12 Family 1 126 139 33.8 3.1e-08 1 No_clan
Cotton_A_01751_CDS 77 352 77 352 PF03643.15 Vps26 Family 1 275 275 409.6 4.5e-123 1 CL0135
Cotton_A_18920_CDS 14 109 14 112 PF03195.14 LOB Family 1 96 99 126.8 3.8e-37 1 No_clan
Cotton_A_21110_CDS 111 225 111 225 PF03556.15 Cullin_binding Family 1 120 120 90.6 9.8e-26 1 CL0220
Cotton_A_41193_CDS 1 114 1 116 PF08284.11 RVP_2 Domain 21 134 136 100.5 6e-29 1 CL0129
Cotton_A_41193_CDS 122 272 113 273 PF00078.27 RVT_1 Family 15 221 222 93.5 1.3e-26 1 CL0027
Cotton_A_41193_CDS 336 390 336 393 PF17919.1 RT_RNaseH_2 Domain 1 60 100 53.3 2.1e-14 1 CL0219
Cotton_A_41193_CDS 471 522 469 522 PF17921.1 Integrase_H2C2 Domain 3 52 58 59.7 2.2e-16 1 CL0361
Cotton_A_01495_CDS 25 92 21 94 PF00240.23 ubiquitin Domain 3 70 72 75.2 2.4e-21 1 CL0072
Cotton_A_06349_CDS 85 135 84 136 PF00847.20 AP2 Domain 2 53 54 47.8 1.2e-12 1 CL0081
Cotton_A_33399_CDS 28 147 27 147 PF02221.15 E1_DerP2_DerF2 Domain 2 134 134 81.0 9.9e-23 1 CL0532
Cotton_A_14827_CDS 71 272 68 336 PF00069.25 Pkinase Domain 4 203 264 125.2 2.9e-36 1 CL0016
Cotton_A_39689_CDS 1 89 1 120 PF05695.12 DUF825 Family 171 259 1486 184.2 2.3e-54 1 No_clan
Cotton_A_30964_CDS 1 220 1 221 PF00762.19 Ferrochelatase Domain 102 316 317 221.7 1.2e-65 1 CL0043
Cotton_A_09628_CDS 727 1032 725 1032 PF00632.25 HECT Domain 3 307 307 304.2 1.2e-90 1 CL0552
Cotton_A_02498_CDS 98 303 97 303 PF01680.17 SOR_SNZ Domain 2 207 207 368.8 7.6e-111 1 CL0036
Cotton_A_24991_CDS 35 94 34 99 PF00076.22 RRM_1 Domain 2 64 70 30.0 3.4e-07 1 CL0221
Cotton_A_14003_CDS 67 210 67 211 PF06799.11 DUF1230 Family 1 142 143 184.3 1.2e-54 1 No_clan
Cotton_A_35819_CDS 181 240 180 241 PF04117.12 Mpv17_PMP22 Family 2 61 62 58.0 8.4e-16 1 No_clan
Cotton_A_29506_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 47.2 1.8e-12 1 CL0123
Cotton_A_29506_CDS 67 112 67 112 PF00249.31 Myb_DNA-binding Domain 1 46 46 50.6 1.6e-13 1 CL0123
Cotton_A_15630_CDS 109 151 107 151 PF13639.6 zf-RING_2 Domain 3 44 44 45.0 1e-11 1 CL0229
Cotton_A_27841_CDS 13 62 12 63 PF00847.20 AP2 Domain 2 53 54 47.0 2.2e-12 1 CL0081
Cotton_A_02235_CDS 19 69 19 70 PF03939.13 Ribosomal_L23eN Family 1 50 51 67.9 6.4e-19 1 No_clan
Cotton_A_02235_CDS 79 141 78 151 PF00276.20 Ribosomal_L23 Family 2 76 86 52.2 6.1e-14 1 No_clan
Cotton_A_04765_CDS 88 131 87 131 PF08387.10 FBD Family 3 46 46 40.7 1.6e-10 1 No_clan
Cotton_A_28924_CDS 35 79 32 79 PF13855.6 LRR_8 Repeat 17 61 61 27.5 1.9e-06 1 CL0022
Cotton_A_28924_CDS 90 127 85 127 PF13855.6 LRR_8 Repeat 24 61 61 29.5 4.5e-07 1 CL0022
Cotton_A_28924_CDS 312 351 307 351 PF13855.6 LRR_8 Repeat 22 61 61 28.0 1.4e-06 1 CL0022
Cotton_A_28924_CDS 460 519 459 519 PF13855.6 LRR_8 Repeat 2 61 61 32.3 6.1e-08 1 CL0022
Cotton_A_28924_CDS 627 841 627 898 PF00069.25 Pkinase Domain 1 212 264 142.4 1.6e-41 1 CL0016
Cotton_A_25564_CDS 1 86 1 91 PF03759.13 PRONE Family 19 92 363 63.5 1.5e-17 1 No_clan
Cotton_A_25564_CDS 85 131 83 139 PF03759.13 PRONE Family 281 327 363 46.4 2.4e-12 1 No_clan
Cotton_A_25564_CDS 156 182 156 182 PF08513.11 LisH Domain 1 27 27 35.2 7.7e-09 1 CL0561
Cotton_A_25564_CDS 192 334 191 335 PF10607.9 CLTH Domain 2 147 148 122.8 1e-35 1 No_clan
Cotton_A_04228_CDS 31 168 28 168 PF00903.25 Glyoxalase Domain 4 128 128 64.0 1.5e-17 1 CL0104
Cotton_A_03826_CDS 92 124 51 124 PF03765.15 CRAL_TRIO_N Domain 27 54 54 30.9 2.2e-07 1 CL0214
Cotton_A_03826_CDS 148 314 147 314 PF00650.20 CRAL_TRIO Domain 2 159 159 114.1 4.7e-33 1 CL0512
Cotton_A_01504_CDS 6 41 5 41 PF05627.11 AvrRpt-cleavage Domain 2 37 37 61.8 2.8e-17 1 No_clan
Cotton_A_21842_CDS 18 125 1 126 PF03004.14 Transposase_24 Family 27 141 142 53.8 2.1e-14 1 No_clan
Cotton_A_37868_CDS 649 665 640 666 PF02493.20 MORN Repeat 6 22 23 6.4 8.8 1 CL0251
Cotton_A_37868_CDS 667 689 667 689 PF02493.20 MORN Repeat 1 23 23 23.3 3.9e-05 1 CL0251
Cotton_A_37868_CDS 690 712 690 712 PF02493.20 MORN Repeat 1 23 23 23.5 3.3e-05 1 CL0251
Cotton_A_37868_CDS 717 735 716 735 PF02493.20 MORN Repeat 5 23 23 7.1 5.5 1 CL0251
Cotton_A_37868_CDS 737 748 736 758 PF02493.20 MORN Repeat 2 13 23 7.1 5.6 1 CL0251
Cotton_A_13106_CDS 68 395 68 401 PF00295.17 Glyco_hydro_28 Domain 1 323 325 291.5 7.3e-87 1 CL0268
Cotton_A_05309_CDS 43 175 35 175 PF00230.20 MIP Family 89 227 227 127.8 4.9e-37 1 No_clan
Cotton_A_34872_CDS 47 159 47 160 PF04526.13 DUF568 Family 1 100 101 73.6 1.7e-20 1 No_clan
Cotton_A_34872_CDS 180 303 178 307 PF03188.16 Cytochrom_B561 Family 3 130 137 27.6 2.7e-06 1 CL0328
Cotton_A_15345_CDS 16 39 16 39 PF01754.16 zf-A20 Family 1 24 24 48.0 8.3e-13 1 No_clan
Cotton_A_15345_CDS 110 146 109 147 PF01428.16 zf-AN1 Family 1 39 40 37.9 1.4e-09 1 No_clan
Cotton_A_24525_CDS 3 76 2 76 PF02798.20 GST_N Domain 2 76 76 69.0 3.4e-19 1 CL0172
Cotton_A_24525_CDS 122 188 93 189 PF13410.6 GST_C_2 Domain 7 68 69 34.7 1.3e-08 1 CL0497
Cotton_A_26420_CDS 91 392 90 395 PF00676.20 E1_dh Family 2 297 300 276.1 2.7e-82 1 CL0254
Cotton_A_01472_CDS 59 102 59 104 PF00249.31 Myb_DNA-binding Domain 1 44 46 50.9 1.3e-13 1 CL0123
Cotton_A_19947_CDS 1 51 1 59 PF00403.26 HMA Domain 7 55 62 41.1 1.8e-10 1 No_clan
Cotton_A_19947_CDS 96 152 94 153 PF00403.26 HMA Domain 2 61 62 46.2 4.5e-12 1 No_clan
Cotton_A_31107_CDS 38 360 38 360 PF03492.15 Methyltransf_7 Family 1 334 334 367.7 5.4e-110 1 CL0063
Cotton_A_22749_CDS 9 178 7 180 PF00025.21 Arf Domain 3 173 175 154.5 1.8e-45 1 CL0023
Cotton_A_27623_CDS 1 101 1 102 PF00752.17 XPG_N Family 1 100 101 69.9 2.1e-19 1 CL0280
Cotton_A_27623_CDS 142 235 141 235 PF00867.18 XPG_I Family 2 94 94 57.0 1.8e-15 1 CL0464
Cotton_A_22513_CDS 93 400 93 400 PF05623.12 DUF789 Family 1 294 294 324.7 6.9e-97 1 No_clan
Cotton_A_26592_CDS 53 161 52 164 PF01426.18 BAH Domain 2 116 122 38.9 6.4e-10 1 No_clan
Cotton_A_26592_CDS 367 416 366 416 PF08711.11 Med26 Domain 2 53 53 43.9 1.8e-11 1 No_clan
Cotton_A_23254_CDS 19 182 19 183 PF03398.14 Ist1 Family 1 163 164 172.8 5.3e-51 1 No_clan
Cotton_A_26736_CDS 5 38 4 47 PF12937.7 F-box-like Domain 5 38 48 25.9 6.9e-06 1 CL0271
Cotton_A_26443_CDS 18 82 18 93 PF00538.19 Linker_histone Domain 1 70 74 68.6 4.4e-19 1 CL0123
Cotton_A_33846_CDS 89 296 79 300 PF00067.22 p450 Domain 31 248 463 74.5 6.9e-21 1 No_clan
Cotton_A_33846_CDS 301 436 299 438 PF00067.22 p450 Domain 325 461 463 101.3 5.3e-29 1 No_clan
Cotton_A_23076_CDS 423 681 422 681 PF04938.12 SIP1 Family 2 219 219 231.0 1.3e-68 1 No_clan
Cotton_A_25816_CDS 215 531 215 531 PF01501.20 Glyco_transf_8 Family 1 256 256 299.7 1.8e-89 1 CL0110
Cotton_A_23472_CDS 69 296 68 320 PF02450.15 LCAT Family 2 231 392 128.0 5.1e-37 1 CL0028
Cotton_A_19887_CDS 4 146 3 146 PF01280.20 Ribosomal_L19e Family 2 144 144 219.1 2.2e-65 1 No_clan
Cotton_A_28126_CDS 5 40 3 43 PF00646.33 F-box Domain 3 38 48 25.5 8.9e-06 1 CL0271
Cotton_A_18749_CDS 11 57 10 57 PF00319.18 SRF-TF Domain 2 48 48 86.1 8.1e-25 1 No_clan
Cotton_A_18749_CDS 82 168 78 169 PF01486.17 K-box Family 6 92 93 74.5 5.7e-21 1 No_clan
Cotton_A_18103_CDS 60 220 60 220 PF01554.18 MatE Family 1 161 161 109.2 1.6e-31 1 CL0222
Cotton_A_18103_CDS 281 442 281 443 PF01554.18 MatE Family 1 159 161 123.9 4.5e-36 1 CL0222
Cotton_A_13276_CDS 174 343 174 343 PF00005.27 ABC_tran Domain 1 137 137 88.1 6.9e-25 1 CL0023
Cotton_A_13276_CDS 507 642 507 642 PF00005.27 ABC_tran Domain 1 137 137 87.2 1.4e-24 1 CL0023
Cotton_A_21959_CDS 29 66 26 66 PF08263.12 LRRNT_2 Family 4 41 41 37.1 2.9e-09 1 No_clan
Cotton_A_21959_CDS 143 165 143 165 PF00560.33 LRR_1 Repeat 1 23 23 10.5 0.82 1 CL0022
Cotton_A_21959_CDS 287 346 287 346 PF13855.6 LRR_8 Repeat 2 61 61 27.4 2.1e-06 1 CL0022
Cotton_A_21959_CDS 502 562 502 562 PF13855.6 LRR_8 Repeat 1 61 61 29.7 4e-07 1 CL0022
Cotton_A_21959_CDS 568 610 563 610 PF13855.6 LRR_8 Repeat 19 61 61 27.1 2.5e-06 1 CL0022
Cotton_A_21959_CDS 651 709 648 709 PF13855.6 LRR_8 Repeat 4 61 61 44.5 9.3e-12 1 CL0022
Cotton_A_21959_CDS 716 757 712 757 PF13855.6 LRR_8 Repeat 20 61 61 28.9 7.1e-07 1 CL0022
Cotton_A_21959_CDS 865 1146 864 1148 PF00069.25 Pkinase Domain 2 259 264 147.6 4.1e-43 1 CL0016
Cotton_A_08097_CDS 21 100 21 101 PF03810.19 IBN_N Family 1 73 74 50.3 1.6e-13 1 CL0020
Cotton_A_08097_CDS 379 435 379 435 PF13513.6 HEAT_EZ Repeat 1 55 55 38.2 1.5e-09 1 CL0020
Cotton_A_11784_CDS 8 40 2 43 PF00847.20 AP2 Domain 22 51 54 31.1 2e-07 1 CL0081
Cotton_A_23391_CDS 43 80 41 81 PF08263.12 LRRNT_2 Family 3 40 41 35.8 7.1e-09 1 No_clan
Cotton_A_23391_CDS 550 609 550 609 PF13855.6 LRR_8 Repeat 2 61 61 29.1 6.1e-07 1 CL0022
Cotton_A_23391_CDS 714 938 712 1014 PF00069.25 Pkinase Domain 3 204 264 134.7 3.7e-39 1 CL0016
Cotton_A_16527_CDS 2 73 1 74 PF00450.22 Peptidase_S10 Domain 342 418 419 62.5 4.7e-17 1 CL0028
Cotton_A_21234_CDS 55 185 54 185 PF00917.26 MATH Domain 2 113 113 44.0 2e-11 1 CL0389
Cotton_A_21234_CDS 212 332 212 334 PF00917.26 MATH Domain 1 111 113 45.5 7.1e-12 1 CL0389
Cotton_A_34044_CDS 43 80 41 81 PF08263.12 LRRNT_2 Family 4 40 41 45.7 5.9e-12 1 No_clan
Cotton_A_34044_CDS 135 193 133 193 PF13855.6 LRR_8 Repeat 3 61 61 30.9 1.7e-07 1 CL0022
Cotton_A_07600_CDS 140 178 140 178 PF00097.25 zf-C3HC4 Domain 1 41 41 31.6 1.1e-07 1 CL0229
Cotton_A_07600_CDS 270 414 267 415 PF02182.17 SAD_SRA Domain 5 156 157 137.0 4.4e-40 1 CL0178
Cotton_A_07600_CDS 507 561 507 561 PF13445.6 zf-RING_UBOX Domain 1 39 39 31.8 1e-07 1 CL0229
Cotton_A_07600_CDS 776 978 776 1081 PF00009.27 GTP_EFTU Domain 1 186 194 147.7 2.9e-43 1 CL0023
Cotton_A_07600_CDS 1020 1086 1020 1087 PF03144.25 GTP_EFTU_D2 Domain 1 73 74 32.8 6.9e-08 1 CL0575
Cotton_A_07600_CDS 1093 1201 1092 1202 PF03143.17 GTP_EFTU_D3 Domain 2 110 112 115.9 1.1e-33 1 No_clan
Cotton_A_33264_CDS 23 73 22 73 PF00046.29 Homeodomain Domain 3 53 57 36.3 3.7e-09 1 CL0123
Cotton_A_21015_CDS 10 97 9 111 PF12796.7 Ank_2 Repeat 2 75 83 32.9 7.3e-08 1 CL0465
Cotton_A_21015_CDS 113 205 113 210 PF12796.7 Ank_2 Repeat 1 78 83 49.4 5.2e-13 1 CL0465
Cotton_A_21015_CDS 282 397 281 400 PF13962.6 PGG Domain 2 113 116 89.3 1.5e-25 1 No_clan
Cotton_A_30135_CDS 65 114 64 115 PF00847.20 AP2 Domain 2 53 54 42.1 7.4e-11 1 CL0081
Cotton_A_05336_CDS 136 237 135 237 PF00011.21 HSP20 Family 2 102 102 87.7 4.6e-25 1 CL0190
Cotton_A_15191_CDS 4 194 1 194 PF00069.25 Pkinase Domain 91 264 264 167.2 4.3e-49 1 CL0016
Cotton_A_06832_CDS 11 169 11 171 PF00071.22 Ras Domain 1 159 162 197.0 1.5e-58 1 CL0023
Cotton_A_19142_CDS 39 313 38 313 PF04674.12 Phi_1 Family 2 276 276 288.8 3.8e-86 1 No_clan
Cotton_A_16488_CDS 29 203 24 204 PF01105.24 EMP24_GP25L Domain 7 181 182 143.2 8.1e-42 1 CL0521
Cotton_A_07741_CDS 6 211 5 212 PF16213.5 DCB Family 2 177 178 149.4 8e-44 1 No_clan
Cotton_A_07741_CDS 337 495 336 495 PF12783.7 Sec7_N Domain 2 158 158 149.6 6.6e-44 1 No_clan
Cotton_A_07741_CDS 609 790 608 790 PF01369.20 Sec7 Domain 2 183 183 248.6 3.1e-74 1 No_clan
Cotton_A_07741_CDS 1157 1239 1157 1240 PF09324.10 DUF1981 Family 1 83 84 105.9 7.3e-31 1 No_clan
Cotton_A_07741_CDS 1335 1442 1254 1476 PF16206.5 Mon2_C Family 77 186 785 46.1 2.1e-12 1 No_clan
Cotton_A_14061_CDS 48 206 47 206 PF04043.15 PMEI Domain 2 154 154 108.2 4.8e-31 1 No_clan
Cotton_A_14061_CDS 256 513 256 517 PF01095.19 Pectinesterase Family 1 258 298 423.8 2.3e-127 1 CL0268
Cotton_A_34663_CDS 59 113 58 113 PF13881.6 Rad60-SLD_2 Domain 58 111 111 39.7 4.3e-10 1 CL0072
Cotton_A_15428_CDS 66 186 66 186 PF00380.19 Ribosomal_S9 Family 1 121 121 164.2 1.6e-48 1 CL0329
Cotton_A_27135_CDS 27 287 26 294 PF01459.22 Porin_3 Family 2 265 270 136.6 1.1e-39 1 CL0193
Cotton_A_21217_CDS 48 132 48 134 PF00166.21 Cpn10 Domain 1 91 93 59.0 3.7e-16 1 CL0296
Cotton_A_13049_CDS 544 696 513 699 PF09787.9 Golgin_A5 Family 140 299 306 68.8 5.2e-19 1 No_clan
Cotton_A_14869_CDS 53 362 53 362 PF00389.30 2-Hacid_dh Domain 1 134 134 119.6 7.3e-35 1 CL0325
Cotton_A_14869_CDS 155 330 155 330 PF02826.19 2-Hacid_dh_C Domain 1 178 178 212.6 2.6e-63 1 CL0063
Cotton_A_14869_CDS 521 579 519 582 PF01842.25 ACT Domain 3 63 67 33.6 2.5e-08 1 CL0070
Cotton_A_18421_CDS 364 423 362 448 PF03514.14 GRAS Family 3 61 374 35.1 6.8e-09 1 CL0063
Cotton_A_04800_CDS 18 112 17 113 PF13334.6 DUF4094 Family 2 87 88 124.3 1.9e-36 1 No_clan
Cotton_A_04800_CDS 152 349 152 350 PF01762.21 Galactosyl_T Family 1 194 195 174.6 2.1e-51 1 CL0110
Cotton_A_10086_CDS 1 108 1 108 PF04997.12 RNA_pol_Rpb1_1 Domain 206 312 312 100.0 1.6e-28 1 No_clan
Cotton_A_10086_CDS 110 158 110 169 PF00623.20 RNA_pol_Rpb1_2 Domain 1 49 166 32.9 7.1e-08 1 No_clan
Cotton_A_10086_CDS 173 250 158 252 PF00623.20 RNA_pol_Rpb1_2 Domain 87 164 166 92.9 2.5e-26 1 No_clan
Cotton_A_25313_CDS 74 243 71 243 PF00753.27 Lactamase_B Domain 5 197 197 39.9 4.5e-10 1 CL0381
Cotton_A_33984_CDS 39 179 38 180 PF14223.6 Retrotran_gag_2 Family 2 137 138 113.1 7.6e-33 1 CL0523
Cotton_A_34973_CDS 428 704 415 705 PF00176.23 SNF2_N Family 52 349 350 233.1 3.6e-69 1 CL0023
Cotton_A_34973_CDS 723 836 722 836 PF00271.31 Helicase_C Family 2 111 111 70.0 2e-19 1 CL0023
Cotton_A_34973_CDS 916 990 915 990 PF14619.6 SnAC Domain 2 77 77 32.5 9.7e-08 1 No_clan
Cotton_A_14394_CDS 32 172 27 172 PF10604.9 Polyketide_cyc2 Family 6 143 143 76.3 2.7e-21 1 CL0209
Cotton_A_15924_CDS 176 342 176 342 PF13359.6 DDE_Tnp_4 Domain 1 158 158 112.4 1.6e-32 1 CL0219
Cotton_A_31963_CDS 17 50 17 50 PF02375.17 JmjN Family 1 34 34 54.0 1.1e-14 1 CL0029
Cotton_A_31963_CDS 317 404 317 412 PF02373.22 JmjC Domain 1 82 114 65.3 6.3e-18 1 CL0029
Cotton_A_18204_CDS 2 226 1 227 PF01490.18 Aa_trans Family 23 242 409 96.5 1.4e-27 1 CL0062
Cotton_A_29012_CDS 94 146 92 147 PF00046.29 Homeodomain Domain 4 56 57 58.3 4.9e-16 1 CL0123
Cotton_A_29012_CDS 148 183 148 184 PF02183.18 HALZ Coiled-coil 1 36 43 45.4 6.7e-12 1 No_clan
Cotton_A_04699_CDS 327 367 327 368 PF00514.23 Arm Repeat 1 40 41 23.0 5.9e-05 1 CL0020
Cotton_A_04699_CDS 514 753 514 756 PF01734.22 Patatin Family 1 201 204 70.8 1.7e-19 1 CL0323
Cotton_A_19285_CDS 4 101 4 106 PF03195.14 LOB Family 1 93 99 79.7 1.9e-22 1 No_clan
Cotton_A_24369_CDS 97 126 97 127 PF01535.20 PPR Family 1 30 31 22.9 6.8e-05 1 CL0020
Cotton_A_24369_CDS 163 203 162 209 PF13041.6 PPR_2 Repeat 2 42 50 38.2 1.2e-09 1 CL0020
Cotton_A_24369_CDS 267 296 266 296 PF01535.20 PPR Family 2 31 31 26.8 3.6e-06 1 CL0020
Cotton_A_24369_CDS 364 410 364 413 PF13041.6 PPR_2 Repeat 1 47 50 34.8 1.4e-08 1 CL0020
Cotton_A_24369_CDS 440 466 438 467 PF01535.20 PPR Family 4 30 31 14.8 0.026 1 CL0020
Cotton_A_24369_CDS 468 496 468 497 PF01535.20 PPR Family 1 29 31 12.5 0.13 1 CL0020
Cotton_A_24369_CDS 567 593 566 596 PF01535.20 PPR Family 2 28 31 11.4 0.3 1 CL0020
Cotton_A_24369_CDS 664 712 664 713 PF13041.6 PPR_2 Repeat 1 49 50 36.9 3e-09 1 CL0020
Cotton_A_34647_CDS 50 277 46 282 PF00182.19 Glyco_hydro_19 Domain 5 227 232 216.0 6.5e-64 1 CL0037
Cotton_A_25536_CDS 122 355 85 358 PF00664.23 ABC_membrane Family 40 271 274 77.2 1.6e-21 1 CL0241
Cotton_A_25536_CDS 421 572 421 572 PF00005.27 ABC_tran Domain 1 137 137 116.9 8.9e-34 1 CL0023
Cotton_A_08069_CDS 140 321 132 321 PF00544.19 Pec_lyase_C Domain 32 211 211 74.3 9.7e-21 1 CL0268
Cotton_A_05928_CDS 72 115 72 118 PF01479.25 S4 Domain 1 44 48 48.3 5.8e-13 1 CL0492
Cotton_A_34727_CDS 47 498 47 513 PF00067.22 p450 Domain 1 450 463 354.7 6.9e-106 1 No_clan
Cotton_A_30882_CDS 34 130 33 130 PF01657.17 Stress-antifung Family 2 95 95 74.8 6.4e-21 1 No_clan
Cotton_A_30882_CDS 153 243 144 244 PF01657.17 Stress-antifung Family 10 93 95 50.9 1.8e-13 1 No_clan
Cotton_A_30882_CDS 343 609 340 611 PF07714.17 Pkinase_Tyr Domain 4 257 259 172.5 9.9e-51 1 CL0016
Cotton_A_30882_CDS 613 658 613 658 PF11883.8 DUF3403 Family 1 46 46 30.1 3.9e-07 1 No_clan
Cotton_A_02880_CDS 6 155 5 188 PF00009.27 GTP_EFTU Domain 2 132 194 148.2 2e-43 1 CL0023
Cotton_A_02880_CDS 155 211 154 213 PF03144.25 GTP_EFTU_D2 Domain 10 72 74 39.2 6.7e-10 1 CL0575
Cotton_A_02880_CDS 220 327 219 328 PF03143.17 GTP_EFTU_D3 Domain 2 111 112 135.0 1.2e-39 1 No_clan
Cotton_A_15355_CDS 17 170 6 170 PF02535.22 Zip Family 32 228 333 61.6 7e-17 1 CL0184
Cotton_A_04780_CDS 5 97 5 100 PF03647.13 Tmemb_14 Family 1 86 92 92.5 2.1e-26 1 No_clan
Cotton_A_17707_CDS 61 366 61 366 PF00069.25 Pkinase Domain 1 264 264 185.1 1.5e-54 1 CL0016
Cotton_A_16427_CDS 20 132 19 134 PF07732.15 Cu-oxidase_3 Domain 2 116 119 122.2 1.1e-35 1 CL0026
Cotton_A_16427_CDS 146 282 145 285 PF00394.22 Cu-oxidase Domain 2 156 159 116.7 1e-33 1 CL0026
Cotton_A_16427_CDS 386 495 365 497 PF07731.14 Cu-oxidase_2 Domain 24 131 137 78.6 3.4e-22 1 CL0026
Cotton_A_14841_CDS 6 48 5 51 PF00646.33 F-box Domain 3 45 48 40.9 1.2e-10 1 CL0271
Cotton_A_25901_CDS 198 220 198 220 PF00560.33 LRR_1 Repeat 1 23 23 12.4 0.19 1 CL0022
Cotton_A_25901_CDS 254 275 253 275 PF00560.33 LRR_1 Repeat 2 23 23 12.0 0.25 1 CL0022
Cotton_A_25901_CDS 424 481 421 481 PF13855.6 LRR_8 Repeat 4 61 61 36.6 2.9e-09 1 CL0022
Cotton_A_28252_CDS 442 476 435 476 PF00400.32 WD40 Repeat 7 38 38 18.8 0.0022 1 CL0186
Cotton_A_28252_CDS 482 519 480 519 PF00400.32 WD40 Repeat 3 37 38 12.6 0.2 1 CL0186
Cotton_A_14338_CDS 3 117 1 117 PF03140.15 DUF247 Family 281 397 397 100.8 9.4e-29 1 No_clan
Cotton_A_31991_CDS 115 257 114 257 PF03255.14 ACCA Family 2 144 144 177.7 1.1e-52 1 CL0127
Cotton_A_06354_CDS 1 101 1 101 PF04618.12 HD-ZIP_N Domain 1 110 110 102.9 1.3e-29 1 No_clan
Cotton_A_06354_CDS 134 188 133 189 PF00046.29 Homeodomain Domain 2 56 57 59.7 1.8e-16 1 CL0123
Cotton_A_06354_CDS 190 224 190 225 PF02183.18 HALZ Coiled-coil 1 42 43 42.7 4.8e-11 1 No_clan
Cotton_A_38449_CDS 158 306 158 306 PF01590.26 GAF Domain 1 133 133 55.4 9.4e-15 1 CL0161
Cotton_A_38449_CDS 343 407 342 407 PF00512.25 HisKA Domain 2 67 67 60.0 1.7e-16 1 CL0025
Cotton_A_38449_CDS 454 584 454 586 PF02518.26 HATPase_c Domain 1 110 112 102.1 2.4e-29 1 CL0025
Cotton_A_38449_CDS 615 726 615 728 PF00072.24 Response_reg Domain 1 110 112 42.4 6.4e-11 1 CL0304
Cotton_A_10975_CDS 45 80 43 84 PF00249.31 Myb_DNA-binding Domain 3 38 46 32.1 9.6e-08 1 CL0123
Cotton_A_10975_CDS 630 730 630 730 PF06584.13 DIRP Family 1 106 106 101.7 2.3e-29 1 No_clan
Cotton_A_08516_CDS 52 317 52 322 PF01650.18 Peptidase_C13 Family 1 251 256 304.6 5.7e-91 1 CL0093
Cotton_A_21495_CDS 44 161 44 161 PF14845.6 Glycohydro_20b2 Domain 1 137 137 69.9 3.2e-19 1 CL0546
Cotton_A_21495_CDS 181 537 181 538 PF00728.22 Glyco_hydro_20 Domain 1 353 354 325.8 3.9e-97 1 CL0058
Cotton_A_09045_CDS 322 539 322 539 PF07774.13 EMC1_C Domain 1 213 213 229.8 2.8e-68 1 No_clan
Cotton_A_27059_CDS 14 99 13 116 PF05653.14 Mg_trans_NIPA Family 2 88 295 135.0 2.7e-39 1 CL0184
Cotton_A_27059_CDS 123 330 102 330 PF05653.14 Mg_trans_NIPA Family 88 295 295 292.5 2.9e-87 1 CL0184
Cotton_A_27833_CDS 2 33 1 33 PF08263.12 LRRNT_2 Family 10 41 41 26.7 4.9e-06 1 No_clan
Cotton_A_27833_CDS 86 103 86 107 PF00560.33 LRR_1 Repeat 1 19 23 10.7 0.67 1 CL0022
Cotton_A_27833_CDS 495 516 494 516 PF00560.33 LRR_1 Repeat 2 23 23 9.6 1.6 1 CL0022
Cotton_A_27833_CDS 632 914 630 916 PF00069.25 Pkinase Domain 3 260 264 145.3 2.1e-42 1 CL0016
Cotton_A_02477_CDS 207 522 207 523 PF10250.9 O-FucT Family 1 335 336 240.5 3.7e-71 1 CL0113
Cotton_A_36867_CDS 55 185 55 185 PF03641.14 Lysine_decarbox Family 1 132 132 152.9 4.7e-45 1 CL0349
Cotton_A_13320_CDS 35 132 35 133 PF03195.14 LOB Family 1 98 99 141.1 1.4e-41 1 No_clan
Cotton_A_30468_CDS 3 213 3 214 PF00091.25 Tubulin Domain 1 196 197 229.2 5.1e-68 1 CL0566
Cotton_A_30468_CDS 263 392 263 393 PF03953.17 Tubulin_C Domain 1 125 126 172.0 5.5e-51 1 CL0442
Cotton_A_18611_CDS 106 433 106 433 PF00069.25 Pkinase Domain 1 264 264 171.3 2.4e-50 1 CL0016
Cotton_A_25563_CDS 630 1033 611 1034 PF00176.23 SNF2_N Family 45 349 350 234.9 1e-69 1 CL0023
Cotton_A_25563_CDS 1071 1108 1070 1109 PF13923.6 zf-C3HC4_2 Domain 2 39 40 29.7 4.3e-07 1 CL0229
Cotton_A_25563_CDS 1220 1321 1207 1321 PF00271.31 Helicase_C Family 12 111 111 58.6 6.7e-16 1 CL0023
Cotton_A_07862_CDS 41 105 40 105 PF01197.18 Ribosomal_L31 Family 2 67 67 59.3 3.3e-16 1 No_clan
Cotton_A_05921_CDS 143 308 99 313 PF01852.19 START Domain 46 203 209 50.3 2e-13 1 CL0209
Cotton_A_21734_CDS 24 98 8 98 PF14368.6 LTP_2 Family 15 97 97 27.2 3.1e-06 1 CL0482
Cotton_A_17359_CDS 113 217 113 218 PF02362.21 B3 Family 1 100 101 101.8 1.5e-29 1 CL0405
Cotton_A_26133_CDS 38 179 35 179 PF01553.21 Acyltransferase Family 4 135 135 83.2 1.2e-23 1 CL0228
Cotton_A_38170_CDS 228 420 218 421 PF00566.18 RabGAP-TBC Family 43 214 215 131.8 2.7e-38 1 No_clan
Cotton_A_00909_CDS 1 133 1 140 PF00067.22 p450 Domain 326 455 463 151.3 3.5e-44 1 No_clan
Cotton_A_14528_CDS 85 130 84 130 PF13639.6 zf-RING_2 Domain 2 44 44 47.9 1.3e-12 1 CL0229
Cotton_A_02011_CDS 125 382 124 382 PF05705.14 DUF829 Domain 2 241 241 186.8 5.8e-55 1 CL0028
Cotton_A_12780_CDS 30 132 29 132 PF13947.6 GUB_WAK_bind Domain 2 106 106 91.3 6e-26 1 No_clan
Cotton_A_12780_CDS 297 338 297 339 PF07645.15 EGF_CA Domain 1 41 42 31.8 1.2e-07 1 CL0001
Cotton_A_22166_CDS 102 281 101 281 PF14543.6 TAXi_N Domain 2 178 178 131.8 3.1e-38 1 CL0129
Cotton_A_22166_CDS 301 442 300 443 PF14541.6 TAXi_C Domain 2 160 161 65.9 3.5e-18 1 CL0129
Cotton_A_33253_CDS 307 334 307 336 PF13606.6 Ank_3 Repeat 1 29 31 20.2 0.00053 1 CL0465
Cotton_A_33253_CDS 437 511 419 512 PF12796.7 Ank_2 Repeat 18 82 83 33.3 5.3e-08 1 CL0465
Cotton_A_33253_CDS 529 610 518 611 PF12796.7 Ank_2 Repeat 11 82 83 40.7 2.6e-10 1 CL0465
Cotton_A_02666_CDS 93 390 93 391 PF02383.18 Syja_N Family 1 319 320 261.5 1.1e-77 1 CL0031
Cotton_A_30160_CDS 18 67 18 67 PF13041.6 PPR_2 Repeat 1 50 50 69.5 2.1e-19 1 CL0020
Cotton_A_30160_CDS 77 134 76 138 PF13812.6 PPR_3 Repeat 2 59 63 37.6 1.7e-09 1 CL0020
Cotton_A_30160_CDS 158 207 158 207 PF13041.6 PPR_2 Repeat 1 50 50 68.5 4e-19 1 CL0020
Cotton_A_27001_CDS 186 336 186 338 PF01764.25 Lipase_3 Family 1 140 142 123.9 4.3e-36 1 CL0028
Cotton_A_33883_CDS 32 74 31 74 PF13639.6 zf-RING_2 Domain 2 44 44 32.1 1e-07 1 CL0229
Cotton_A_33883_CDS 200 273 199 277 PF01480.17 PWI Family 2 60 72 23.7 4.5e-05 1 No_clan
Cotton_A_24182_CDS 13 90 11 90 PF00181.23 Ribosomal_L2 Domain 3 77 77 65.0 4.5e-18 1 CL0021
Cotton_A_24182_CDS 98 230 97 234 PF03947.18 Ribosomal_L2_C Domain 2 121 126 156.5 3.4e-46 1 CL0107
Cotton_A_28356_CDS 103 302 103 302 PF03145.16 Sina Family 1 200 200 267.0 1.1e-79 1 CL0389
Cotton_A_35887_CDS 16 132 16 176 PF13460.6 NAD_binding_10 Domain 2 102 184 42.2 8e-11 1 CL0063
Cotton_A_17307_CDS 23 145 3 145 PF08613.11 Cyclin Family 37 161 161 134.8 3.4e-39 1 CL0065
Cotton_A_13362_CDS 621 749 611 749 PF00271.31 Helicase_C Family 9 111 111 48.6 8.5e-13 1 CL0023
Cotton_A_13362_CDS 811 886 811 937 PF04408.23 HA2 Domain 1 82 108 76.7 1.5e-21 1 No_clan
Cotton_A_13362_CDS 959 1036 959 1036 PF07717.16 OB_NTP_bind Domain 1 83 83 76.5 1.5e-21 1 CL0021
Cotton_A_23426_CDS 174 223 174 223 PF00847.20 AP2 Domain 1 53 54 35.8 6.9e-09 1 CL0081
Cotton_A_19371_CDS 183 214 182 217 PF00514.23 Arm Repeat 7 38 41 21.5 0.00018 1 CL0020
Cotton_A_24405_CDS 39 136 38 138 PF01657.17 Stress-antifung Family 2 93 95 74.1 1e-20 1 No_clan
Cotton_A_24405_CDS 153 236 151 239 PF01657.17 Stress-antifung Family 2 92 95 40.0 4.7e-10 1 No_clan
Cotton_A_06230_CDS 14 117 14 117 PF02991.16 Atg8 Domain 1 104 104 172.0 2.9e-51 1 CL0072
Cotton_A_31363_CDS 14 110 13 110 PF12796.7 Ank_2 Repeat 2 83 83 44.4 1.9e-11 1 CL0465
Cotton_A_31363_CDS 138 185 138 185 PF00415.18 RCC1 Repeat 3 50 50 31.3 2.3e-07 1 CL0186
Cotton_A_31363_CDS 189 242 188 244 PF00415.18 RCC1 Repeat 2 48 50 32.4 1e-07 1 CL0186
Cotton_A_31363_CDS 248 295 247 295 PF00415.18 RCC1 Repeat 2 50 50 44.0 2.6e-11 1 CL0186
Cotton_A_31363_CDS 298 349 298 349 PF00415.18 RCC1 Repeat 1 50 50 43.0 5.2e-11 1 CL0186
Cotton_A_33753_CDS 62 344 62 346 PF02705.16 K_trans Family 1 272 534 289.7 3.8e-86 1 CL0062
Cotton_A_14327_CDS 2 88 1 91 PF01565.23 FAD_binding_4 Domain 48 135 139 60.3 1.6e-16 1 CL0077
Cotton_A_14327_CDS 116 435 115 436 PF04030.14 ALO Family 2 259 260 64.1 1.7e-17 1 CL0277
Cotton_A_31688_CDS 5 328 4 328 PF12767.7 SAGA-Tad1 Family 2 235 235 216.1 5.5e-64 1 No_clan
Cotton_A_23012_CDS 666 946 664 947 PF15787.5 DUF4704 Family 4 278 279 161.8 2e-47 1 No_clan
Cotton_A_16727_CDS 67 316 67 317 PF02705.16 K_trans Family 1 217 534 253.7 3e-75 1 CL0062
Cotton_A_18268_CDS 18 103 16 104 PF02519.14 Auxin_inducible Family 2 89 90 103.5 4.9e-30 1 No_clan
Cotton_A_01120_CDS 578 767 565 768 PF09496.10 CENP-O Family 15 212 213 91.5 7.1e-26 1 No_clan
Cotton_A_06084_CDS 97 244 96 244 PF00056.23 Ldh_1_N Family 2 141 141 120.8 4.5e-35 1 CL0063
Cotton_A_06084_CDS 247 416 247 419 PF02866.18 Ldh_1_C Domain 1 164 167 126.5 9.2e-37 1 CL0341
Cotton_A_14053_CDS 59 127 59 140 PF12738.7 PTCB-BRCT Family 1 54 63 35.1 9.4e-09 1 CL0459
Cotton_A_35295_CDS 163 965 162 965 PF00311.17 PEPcase Family 2 795 795 988.2 2.8e-297 1 CL0151
Cotton_A_11179_CDS 441 463 413 471 PF16135.5 Jas Family 44 66 76 25.9 8.3e-06 1 No_clan
Cotton_A_29811_CDS 70 225 63 225 PF02330.16 MAM33 Domain 30 212 212 79.7 2.9e-22 1 No_clan
Cotton_A_24406_CDS 60 150 11 154 PF02519.14 Auxin_inducible Family 9 86 90 78.4 3.3e-22 1 No_clan
Cotton_A_00848_CDS 53 128 52 129 PF03330.18 DPBB_1 Domain 2 82 83 69.3 2.6e-19 1 CL0199
Cotton_A_20061_CDS 39 91 38 91 PF08100.11 Dimerisation Domain 2 51 51 63.0 1.9e-17 1 CL0123
Cotton_A_20061_CDS 146 347 146 348 PF00891.18 Methyltransf_2 Domain 1 209 210 175.3 9.6e-52 1 CL0063
Cotton_A_33535_CDS 51 547 51 547 PF00342.19 PGI Domain 1 486 486 728.6 3e-219 1 CL0067
Cotton_A_01420_CDS 43 203 43 203 PF01554.18 MatE Family 1 161 161 120.8 4.1e-35 1 CL0222
Cotton_A_01420_CDS 264 426 264 427 PF01554.18 MatE Family 1 160 161 112.6 1.3e-32 1 CL0222
Cotton_A_37631_CDS 111 154 110 154 PF13639.6 zf-RING_2 Domain 2 44 44 42.9 4.4e-11 1 CL0229
Cotton_A_27477_CDS 117 151 112 151 PF00400.32 WD40 Repeat 6 38 38 14.0 0.07 1 CL0186
Cotton_A_27477_CDS 562 753 560 759 PF12931.7 Sec16_C Domain 3 232 302 27.2 2.8e-06 1 No_clan
Cotton_A_08103_CDS 10 203 5 204 PF01612.20 DNA_pol_A_exo1 Domain 6 175 176 75.7 3.6e-21 1 CL0219
Cotton_A_08103_CDS 342 498 342 499 PF01927.16 Mut7-C Domain 1 145 146 132.2 1.5e-38 1 CL0280
Cotton_A_08103_CDS 508 686 489 709 PF03169.15 OPT Family 304 484 616 133.0 1.3e-38 1 No_clan
Cotton_A_00193_CDS 9 132 8 134 PF00106.25 adh_short Domain 3 120 195 55.2 6.1e-15 1 CL0063
Cotton_A_13376_CDS 35 78 34 78 PF08263.12 LRRNT_2 Family 2 41 41 26.6 5.4e-06 1 No_clan
Cotton_A_13376_CDS 87 140 82 142 PF13855.6 LRR_8 Repeat 6 59 61 28.5 9.4e-07 1 CL0022
Cotton_A_13376_CDS 238 284 224 284 PF13855.6 LRR_8 Repeat 15 61 61 27.8 1.6e-06 1 CL0022
Cotton_A_13376_CDS 417 477 417 477 PF13855.6 LRR_8 Repeat 1 61 61 38.1 9.2e-10 1 CL0022
Cotton_A_39303_CDS 52 126 15 126 PF12796.7 Ank_2 Repeat 24 83 83 40.4 3.2e-10 1 CL0465
Cotton_A_39303_CDS 273 293 270 294 PF00642.24 zf-CCCH Family 5 26 27 22.7 6.6e-05 1 CL0537
Cotton_A_07844_CDS 183 309 182 310 PF07526.11 POX Domain 2 135 136 115.7 2.3e-33 1 No_clan
Cotton_A_07844_CDS 379 418 379 418 PF05920.11 Homeobox_KN Family 1 40 40 63.9 9.2e-18 1 CL0123
Cotton_A_09722_CDS 16 63 16 63 PF00249.31 Myb_DNA-binding Domain 1 46 46 64.7 6.5e-18 1 CL0123
Cotton_A_09722_CDS 69 113 69 114 PF00249.31 Myb_DNA-binding Domain 1 45 46 56.0 3.2e-15 1 CL0123
Cotton_A_11998_CDS 54 194 53 195 PF03018.14 Dirigent Family 2 147 148 187.8 9.1e-56 1 CL0650
Cotton_A_06609_CDS 74 147 74 148 PF03110.14 SBP Domain 1 74 75 107.8 2.5e-31 1 No_clan
Cotton_A_30299_CDS 135 203 120 207 PF12796.7 Ank_2 Repeat 20 75 83 30.2 5.1e-07 1 CL0465
Cotton_A_30299_CDS 497 608 497 610 PF13962.6 PGG Domain 1 114 116 83.2 1.1e-23 1 No_clan
Cotton_A_28212_CDS 463 584 463 585 PF07227.11 PHD_Oberon Family 1 129 130 118.1 2.2e-34 1 CL0390
Cotton_A_28212_CDS 694 812 684 812 PF16312.5 Oberon_cc Family 11 129 129 139.8 4.6e-41 1 No_clan
Cotton_A_27457_CDS 90 219 90 219 PF01743.20 PolyA_pol Domain 1 126 126 85.5 3.9e-24 1 CL0260
Cotton_A_27457_CDS 248 307 246 309 PF12627.7 PolyA_pol_RNAbd Domain 3 62 64 32.3 6e-08 1 No_clan
Cotton_A_37086_CDS 70 124 69 125 PF00046.29 Homeodomain Domain 2 56 57 59.0 2.9e-16 1 CL0123
Cotton_A_37086_CDS 126 160 126 161 PF02183.18 HALZ Coiled-coil 1 42 43 36.8 3.4e-09 1 No_clan
Cotton_A_34611_CDS 31 86 29 87 PF02701.15 zf-Dof Family 3 58 59 109.2 8e-32 1 No_clan
Cotton_A_00257_CDS 17 297 16 297 PF03619.16 Solute_trans_a Family 2 265 265 283.6 1.5e-84 1 No_clan
Cotton_A_00643_CDS 4 26 4 26 PF10584.9 Proteasome_A_N Domain 1 23 23 51.2 6.8e-14 1 CL0052
Cotton_A_00643_CDS 27 209 27 210 PF00227.26 Proteasome Domain 1 189 190 195.7 5e-58 1 CL0052
Cotton_A_04259_CDS 21 279 10 279 PF03151.16 TPT Family 13 290 290 55.4 5.8e-15 1 CL0184
Cotton_A_41077_CDS 245 300 242 302 PF13855.6 LRR_8 Repeat 4 59 61 29.6 4.3e-07 1 CL0022
Cotton_A_11735_CDS 1 40 1 50 PF03446.15 NAD_binding_2 Domain 114 154 158 35.3 1.2e-08 1 CL0063
Cotton_A_11735_CDS 55 209 55 209 PF00393.19 6PGD Domain 1 150 289 186.8 5.6e-55 1 CL0106
Cotton_A_00810_CDS 8 159 1 166 PF00916.20 Sulfate_transp Family 180 301 380 77.9 6.1e-22 1 CL0062
Cotton_A_32227_CDS 104 149 98 150 PF13812.6 PPR_3 Repeat 17 62 63 23.1 5.7e-05 1 CL0020
Cotton_A_32227_CDS 202 245 201 250 PF13041.6 PPR_2 Repeat 2 45 50 33.2 4.5e-08 1 CL0020
Cotton_A_32227_CDS 305 335 305 335 PF01535.20 PPR Family 1 31 31 39.0 4.8e-10 1 CL0020
Cotton_A_32227_CDS 377 400 375 404 PF01535.20 PPR Family 3 26 31 18.0 0.0025 1 CL0020
Cotton_A_32227_CDS 404 451 403 452 PF13041.6 PPR_2 Repeat 2 49 50 35.3 9.6e-09 1 CL0020
Cotton_A_32227_CDS 478 504 476 506 PF01535.20 PPR Family 3 29 31 16.5 0.0073 1 CL0020
Cotton_A_32227_CDS 506 552 504 553 PF13041.6 PPR_2 Repeat 3 49 50 44.6 1.2e-11 1 CL0020
Cotton_A_32227_CDS 579 603 578 606 PF01535.20 PPR Family 2 26 31 13.4 0.072 1 CL0020
Cotton_A_32227_CDS 678 801 678 801 PF14432.6 DYW_deaminase Family 1 127 127 134.1 2.4e-39 1 CL0109
Cotton_A_25127_CDS 17 113 17 113 PF01196.19 Ribosomal_L17 Family 1 94 94 111.7 2.4e-32 1 No_clan
Cotton_A_20639_CDS 131 263 130 263 PF07039.11 DUF1325 Domain 2 132 132 118.3 2.4e-34 1 CL0049
Cotton_A_12518_CDS 6 76 1 94 PF00931.22 NB-ARC Domain 153 222 252 48.3 7e-13 1 CL0023
Cotton_A_01739_CDS 46 98 46 98 PF00010.26 HLH Domain 1 53 53 47.2 1.5e-12 1 No_clan
Cotton_A_33822_CDS 36 180 35 181 PF03018.14 Dirigent Family 2 147 148 134.6 2.3e-39 1 CL0650
Cotton_A_13281_CDS 157 211 156 214 PF00288.26 GHMP_kinases_N Family 2 63 66 30.9 2.3e-07 1 CL0329
Cotton_A_00196_CDS 63 152 62 153 PF02362.21 B3 Family 2 100 101 60.4 1.2e-16 1 CL0405
Cotton_A_31570_CDS 17 297 16 297 PF03619.16 Solute_trans_a Family 2 265 265 287.2 1.3e-85 1 No_clan
Cotton_A_02851_CDS 24 113 24 113 PF00447.17 HSF_DNA-bind Domain 1 96 96 100.9 4.6e-29 1 CL0123
Cotton_A_26427_CDS 108 126 108 126 PF00612.27 IQ Motif 3 21 21 23.1 3.9e-05 1 CL0220
Cotton_A_26427_CDS 132 148 129 148 PF00612.27 IQ Motif 5 21 21 13.6 0.043 1 CL0220
Cotton_A_26427_CDS 351 448 351 468 PF13178.6 DUF4005 Family 1 76 93 85.5 3.1e-24 1 No_clan
Cotton_A_40960_CDS 152 333 151 334 PF00625.21 Guanylate_kin Domain 2 179 182 201.3 1e-59 1 CL0023
Cotton_A_27832_CDS 651 925 649 927 PF00069.25 Pkinase Domain 3 260 264 160.4 5.3e-47 1 CL0016
Cotton_A_37771_CDS 158 192 158 192 PF05553.11 DUF761 Family 2 36 36 48.3 5.1e-13 1 No_clan
Cotton_A_18942_CDS 66 545 52 545 PF00501.28 AMP-binding Family 11 423 423 331.1 7.9e-99 1 CL0378
Cotton_A_09825_CDS 205 274 205 283 PF00072.24 Response_reg Domain 1 69 112 49.4 4.4e-13 1 CL0304
Cotton_A_17493_CDS 1 180 1 181 PF12819.7 Malectin_like Domain 79 280 336 131.9 2.9e-38 1 CL0202
Cotton_A_01884_CDS 88 145 86 151 PF13499.6 EF-hand_7 Domain 4 64 71 34.8 1.7e-08 1 CL0220
Cotton_A_01884_CDS 163 227 162 228 PF13499.6 EF-hand_7 Domain 2 70 71 39.9 4.3e-10 1 CL0220
Cotton_A_11705_CDS 31 309 31 309 PF07651.16 ANTH Domain 1 277 277 325.3 2.4e-97 1 CL0009
Cotton_A_01748_CDS 42 65 42 65 PF13516.6 LRR_6 Repeat 1 23 24 13.0 0.08 1 CL0022
Cotton_A_01748_CDS 69 91 68 92 PF13516.6 LRR_6 Repeat 2 23 24 8.8 1.9 1 CL0022
Cotton_A_13389_CDS 35 133 34 133 PF13456.6 RVT_3 Domain 2 101 124 37.0 2.4e-09 1 CL0219
Cotton_A_25977_CDS 160 272 159 274 PF03479.15 DUF296 Domain 2 105 107 84.9 4.5e-24 1 CL0615
Cotton_A_31797_CDS 1 168 1 168 PF05042.13 Caleosin Family 3 170 170 242.5 2.2e-72 1 CL0220
Cotton_A_28289_CDS 167 253 166 254 PF13837.6 Myb_DNA-bind_4 Domain 3 89 90 78.8 2.9e-22 1 CL0123
Cotton_A_37860_CDS 6 40 4 46 PF00571.28 CBS Domain 8 42 57 22.5 0.00011 1 No_clan
Cotton_A_02291_CDS 325 428 308 429 PF11571.8 Med27 Family 6 85 86 91.2 4e-26 1 No_clan
Cotton_A_03112_CDS 108 379 97 379 PF00481.21 PP2C Family 13 258 258 203.3 5e-60 1 CL0238
Cotton_A_39844_CDS 170 283 164 292 PF00063.21 Myosin_head Domain 32 152 677 124.6 3.7e-36 1 CL0023
Cotton_A_16269_CDS 1 46 1 49 PF08132.11 AdoMetDC_leader Family 1 45 51 93.2 6.8e-27 1 No_clan
Cotton_A_16269_CDS 80 408 78 409 PF01536.16 SAM_decarbox Family 3 354 355 352.0 3.2e-105 1 No_clan
Cotton_A_00952_CDS 259 373 250 423 PF00201.18 UDPGT Family 264 364 499 48.7 5.1e-13 1 CL0113
Cotton_A_34955_CDS 84 345 84 345 PF08323.11 Glyco_transf_5 Domain 1 244 244 251.7 8e-75 1 CL0113
Cotton_A_34955_CDS 399 521 393 528 PF00534.20 Glycos_transf_1 Family 14 139 172 61.3 7.9e-17 1 CL0113
Cotton_A_29147_CDS 154 238 145 238 PF02517.16 CPBP Family 8 92 92 57.3 1.5e-15 1 CL0472
Cotton_A_19805_CDS 24 97 24 99 PF03810.19 IBN_N Family 1 72 74 66.3 1.6e-18 1 CL0020
Cotton_A_19805_CDS 153 450 150 466 PF08506.10 Cse1 Family 6 289 370 33.5 1.9e-08 1 CL0020
Cotton_A_30297_CDS 92 149 92 149 PF04844.13 Ovate Family 1 58 58 76.8 9.4e-22 1 No_clan
Cotton_A_36172_CDS 49 98 44 109 PF08597.10 eIF3_subunit Family 108 162 242 29.5 6.6e-07 1 No_clan
Cotton_A_22161_CDS 42 315 38 315 PF07714.17 Pkinase_Tyr Domain 5 259 259 139.6 1.1e-40 1 CL0016
Cotton_A_05527_CDS 65 543 65 547 PF00221.19 Lyase_aromatic Family 1 460 464 516.4 6.1e-155 1 No_clan
Cotton_A_33882_CDS 46 70 46 76 PF13176.6 TPR_7 Repeat 2 26 36 15.4 0.014 1 CL0020
Cotton_A_33882_CDS 395 426 394 427 PF13181.6 TPR_8 Repeat 2 33 34 13.6 0.061 1 CL0020
Cotton_A_33882_CDS 500 562 500 563 PF13432.6 TPR_16 Family 1 67 68 20.3 0.00067 1 CL0020
Cotton_A_36637_CDS 30 148 29 152 PF00329.19 Complex1_30kDa Family 2 118 122 113.6 8.3e-33 1 No_clan
Cotton_A_17388_CDS 16 145 11 155 PF00892.20 EamA Family 6 133 137 49.1 6e-13 1 CL0184
Cotton_A_17388_CDS 189 326 188 328 PF00892.20 EamA Family 2 135 137 55.1 8.7e-15 1 CL0184
Cotton_A_08699_CDS 35 498 35 503 PF00067.22 p450 Domain 1 458 463 311.7 8e-93 1 No_clan
Cotton_A_25318_CDS 87 496 82 512 PF00067.22 p450 Domain 26 445 463 302.0 6.7e-90 1 No_clan
Cotton_A_01415_CDS 36 351 36 351 PF00225.23 Kinesin Domain 1 333 333 329.0 2.7e-98 1 CL0023
Cotton_A_01415_CDS 781 943 780 944 PF11995.8 DUF3490 Family 2 160 161 235.8 1.9e-70 1 No_clan
Cotton_A_09804_CDS 33 213 31 213 PF00722.21 Glyco_hydro_16 Domain 3 177 177 201.9 5.5e-60 1 CL0004
Cotton_A_09804_CDS 239 286 238 286 PF06955.12 XET_C Family 2 47 47 67.4 7e-19 1 CL0004
Cotton_A_07328_CDS 37 166 37 167 PF00782.20 DSPc Domain 1 132 133 115.6 1.4e-33 1 CL0031
Cotton_A_35633_CDS 47 176 47 182 PF00685.27 Sulfotransfer_1 Domain 1 148 267 79.0 3.9e-22 1 CL0023
Cotton_A_32772_CDS 9 107 9 123 PF03195.14 LOB Family 1 98 99 122.5 8.3e-36 1 No_clan
Cotton_A_12908_CDS 16 78 15 79 PF02953.15 zf-Tim10_DDP Domain 2 63 64 68.1 3.7e-19 1 No_clan
Cotton_A_03285_CDS 7 32 7 40 PF00467.29 KOW Family 1 26 32 22.5 7.8e-05 1 CL0107
Cotton_A_03285_CDS 52 135 52 135 PF01777.18 Ribosomal_L27e Family 1 85 85 104.2 3.5e-30 1 No_clan
Cotton_A_06150_CDS 78 477 73 487 PF01150.17 GDA1_CD39 Family 7 410 423 241.3 1.5e-71 1 CL0108
Cotton_A_04588_CDS 282 413 281 414 PF00004.29 AAA Domain 2 131 132 149.1 8.8e-44 1 CL0023
Cotton_A_04588_CDS 436 478 436 480 PF17862.1 AAA_lid_3 Domain 1 43 45 58.7 3.5e-16 1 CL0671
Cotton_A_04588_CDS 495 688 494 688 PF01434.18 Peptidase_M41 Domain 2 191 191 243.5 1.5e-72 1 CL0126
Cotton_A_12405_CDS 1 196 1 199 PF03552.14 Cellulose_synt Family 432 628 722 367.0 2.1e-109 1 CL0110
Cotton_A_05212_CDS 38 264 37 268 PF02309.16 AUX_IAA Family 2 232 237 218.3 1.3e-64 1 CL0072
Cotton_A_33734_CDS 7 91 1 92 PF03754.13 DUF313 Family 21 112 113 66.3 2.6e-18 1 CL0405
Cotton_A_05204_CDS 53 301 53 303 PF00295.17 Glyco_hydro_28 Domain 1 238 325 200.3 4.1e-59 1 CL0268
Cotton_A_04031_CDS 293 341 293 341 PF14604.6 SH3_9 Domain 1 49 49 44.0 1.5e-11 1 CL0010
Cotton_A_33234_CDS 8 98 8 100 PF10217.9 DUF2039 Family 1 87 89 97.6 4e-28 1 No_clan
Cotton_A_04086_CDS 98 297 98 297 PF03145.16 Sina Family 1 200 200 264.3 7.7e-79 1 CL0389
Cotton_A_11567_CDS 127 341 127 343 PF07002.16 Copine Family 1 216 218 248.2 5.7e-74 1 CL0128
Cotton_A_11567_CDS 401 441 400 443 PF13920.6 zf-C3HC4_3 Domain 2 48 50 43.4 2.2e-11 1 CL0229
Cotton_A_15481_CDS 306 546 306 546 PF07059.12 DUF1336 Family 1 228 229 212.7 7e-63 1 No_clan
Cotton_A_06782_CDS 29 78 28 79 PF00847.20 AP2 Domain 2 53 54 49.7 3.1e-13 1 CL0081
Cotton_A_04613_CDS 63 148 63 148 PF04433.17 SWIRM Domain 1 89 89 85.4 2.6e-24 1 CL0123
Cotton_A_04613_CDS 245 287 243 288 PF00249.31 Myb_DNA-binding Domain 3 45 46 52.8 3.3e-14 1 CL0123
Cotton_A_04613_CDS 388 457 385 461 PF16495.5 SWIRM-assoc_1 Family 4 72 84 33.2 3.7e-08 1 No_clan
Cotton_A_14581_CDS 122 477 109 478 PF08737.10 Rgp1 Family 107 416 417 67.8 1e-18 1 No_clan
Cotton_A_01397_CDS 62 161 62 161 PF10497.9 zf-4CXXC_R1 Domain 1 99 99 125.4 8.4e-37 1 No_clan
Cotton_A_01397_CDS 461 485 451 485 PF15612.6 WHIM1 Family 22 46 46 21.1 0.00017 1 No_clan
Cotton_A_31936_CDS 26 64 23 64 PF08263.12 LRRNT_2 Family 4 41 41 35.9 7e-09 1 No_clan
Cotton_A_31936_CDS 121 179 119 179 PF13855.6 LRR_8 Repeat 3 61 61 32.3 6.1e-08 1 CL0022
Cotton_A_03119_CDS 70 329 69 329 PF00069.25 Pkinase Domain 2 264 264 222.3 7e-66 1 CL0016
Cotton_A_33265_CDS 52 154 49 162 PF00168.30 C2 Domain 9 95 103 41.1 1.7e-10 1 CL0154
Cotton_A_33265_CDS 197 289 196 300 PF00168.30 C2 Domain 7 93 103 37.7 1.9e-09 1 CL0154
Cotton_A_33265_CDS 361 576 361 577 PF07002.16 Copine Family 1 217 218 256.5 1.7e-76 1 CL0128
Cotton_A_34092_CDS 27 122 1 146 PF14009.6 DUF4228 Family 14 107 179 75.6 6e-21 1 No_clan
Cotton_A_12146_CDS 20 239 12 244 PF01168.20 Ala_racemase_N Domain 9 213 219 53.6 2.3e-14 1 CL0036
Cotton_A_12146_CDS 268 330 267 349 PF02922.18 CBM_48 Domain 2 61 84 24.1 3.4e-05 1 CL0369
Cotton_A_12146_CDS 571 662 566 734 PF00128.24 Alpha-amylase Domain 10 105 337 39.4 5.4e-10 1 CL0058
Cotton_A_12146_CDS 926 1013 922 1016 PF02806.18 Alpha-amylase_C Domain 6 92 96 70.9 9.5e-20 1 CL0369
Cotton_A_00251_CDS 8 122 7 123 PF06916.13 DUF1279 Family 2 91 92 93.0 1.2e-26 1 No_clan
Cotton_A_30337_CDS 199 245 199 245 PF01344.25 Kelch_1 Repeat 1 46 46 44.2 1.1e-11 1 CL0186
Cotton_A_30337_CDS 247 296 247 296 PF01344.25 Kelch_1 Repeat 1 46 46 34.7 9.6e-09 1 CL0186
Cotton_A_14517_CDS 135 379 135 379 PF07250.11 Glyoxal_oxid_N Family 1 240 240 300.1 8.8e-90 1 No_clan
Cotton_A_14517_CDS 546 643 538 644 PF09118.11 DUF1929 Domain 8 95 96 77.2 8.6e-22 1 CL0159
Cotton_A_04181_CDS 32 169 30 172 PF06910.11 MEA1 Family 3 125 128 51.0 2.2e-13 1 No_clan
Cotton_A_02619_CDS 12 73 10 74 PF13499.6 EF-hand_7 Domain 3 70 71 56.2 3.5e-15 1 CL0220
Cotton_A_02619_CDS 83 146 83 147 PF13499.6 EF-hand_7 Domain 1 70 71 66.9 1.5e-18 1 CL0220
Cotton_A_01906_CDS 112 432 112 432 PF10250.9 O-FucT Family 1 336 336 250.7 3e-74 1 CL0113
Cotton_A_26619_CDS 35 78 34 78 PF12515.8 CaATP_NAI Family 2 45 45 62.5 2e-17 1 No_clan
Cotton_A_26619_CDS 143 210 140 210 PF00690.26 Cation_ATPase_N Domain 4 69 69 48.4 5.5e-13 1 No_clan
Cotton_A_26619_CDS 263 463 258 465 PF00122.20 E1-E2_ATPase Family 6 179 181 129.7 8.3e-38 1 No_clan
Cotton_A_26619_CDS 482 821 481 821 PF00702.26 Hydrolase Domain 2 210 210 61.3 1.6e-16 1 CL0137
Cotton_A_26619_CDS 892 1068 891 1069 PF00689.21 Cation_ATPase_C Family 2 181 182 161.8 1.4e-47 1 No_clan
Cotton_A_22146_CDS 16 129 5 203 PF00069.25 Pkinase Domain 101 203 264 83.2 1.9e-23 1 CL0016
Cotton_A_27598_CDS 182 451 177 451 PF00928.21 Adap_comp_sub Family 11 264 264 249.2 4.5e-74 1 CL0448
Cotton_A_18609_CDS 95 215 94 216 PF02657.15 SufE Family 2 121 122 94.6 3.6e-27 1 CL0233
Cotton_A_18609_CDS 268 576 265 607 PF02445.16 NadA Family 4 238 299 110.6 8.1e-32 1 No_clan
Cotton_A_07972_CDS 124 555 118 568 PF01150.17 GDA1_CD39 Family 8 409 423 192.1 1.3e-56 1 CL0108
Cotton_A_03306_CDS 29 289 27 293 PF00069.25 Pkinase Domain 3 258 264 145.7 1.6e-42 1 CL0016
Cotton_A_21170_CDS 33 72 32 73 PF08263.12 LRRNT_2 Family 2 40 41 41.4 1.2e-10 1 No_clan
Cotton_A_21170_CDS 116 138 116 138 PF00560.33 LRR_1 Repeat 1 23 23 10.9 0.58 1 CL0022
Cotton_A_21170_CDS 271 289 271 309 PF00560.33 LRR_1 Repeat 1 19 23 11.0 0.56 1 CL0022
Cotton_A_27148_CDS 81 100 80 109 PF05011.13 DBR1 Domain 2 21 139 29.3 9.8e-07 1 No_clan
Cotton_A_20680_CDS 39 477 37 493 PF00067.22 p450 Domain 4 441 463 224.4 2.5e-66 1 No_clan
Cotton_A_09046_CDS 512 687 503 689 PF00270.29 DEAD Domain 11 174 176 52.6 4.6e-14 1 CL0023
Cotton_A_09046_CDS 741 892 737 892 PF00271.31 Helicase_C Family 5 111 111 36.0 7.2e-09 1 CL0023
Cotton_A_09046_CDS 1723 2132 1718 2133 PF00476.20 DNA_pol_A Family 9 375 376 383.8 8.3e-115 1 No_clan
Cotton_A_29666_CDS 1 53 1 55 PF00403.26 HMA Domain 7 58 62 46.6 3.4e-12 1 No_clan
Cotton_A_29666_CDS 109 164 105 166 PF00403.26 HMA Domain 4 55 62 38.7 9.9e-10 1 No_clan
Cotton_A_25683_CDS 21 124 21 124 PF00044.24 Gp_dh_N Domain 1 101 101 114.3 2.7e-33 1 CL0063
Cotton_A_25683_CDS 176 343 176 343 PF02800.20 Gp_dh_C Domain 1 158 158 221.5 3.9e-66 1 CL0139
Cotton_A_19545_CDS 12 120 12 120 PF00255.19 GSHPx Family 1 108 108 132.6 3.8e-39 1 CL0172
Cotton_A_05306_CDS 41 117 24 117 PF04520.13 Senescence_reg Family 84 168 168 86.8 2.8e-24 1 No_clan
Cotton_A_12030_CDS 10 136 9 137 PF16719.5 SAWADEE Domain 2 140 141 76.2 2.4e-21 1 CL0049
Cotton_A_14483_CDS 55 176 48 176 PF00134.23 Cyclin_N Domain 8 127 127 86.2 1.4e-24 1 CL0065
Cotton_A_14483_CDS 178 284 178 291 PF02984.19 Cyclin_C Domain 1 100 119 50.3 2.2e-13 1 CL0065
Cotton_A_17429_CDS 146 275 127 277 PF01126.20 Heme_oxygenase Domain 69 202 205 37.5 2.1e-09 1 CL0230
Cotton_A_35095_CDS 16 164 15 164 PF04535.12 DUF588 Domain 2 150 150 148.7 1e-43 1 CL0396
Cotton_A_19722_CDS 238 285 236 285 PF00010.26 HLH Domain 4 53 53 27.5 2.3e-06 1 No_clan
Cotton_A_38288_CDS 38 151 37 152 PF08240.12 ADH_N Domain 2 108 109 94.9 2.5e-27 1 CL0296
Cotton_A_38288_CDS 194 317 194 318 PF00107.26 ADH_zinc_N Family 1 129 130 66.9 1.6e-18 1 CL0063
Cotton_A_22529_CDS 4 76 2 77 PF02798.20 GST_N Domain 3 75 76 63.7 1.5e-17 1 CL0172
Cotton_A_22529_CDS 126 204 87 204 PF00043.25 GST_C Domain 17 93 93 53.1 2.8e-14 1 CL0497
Cotton_A_35954_CDS 284 499 282 500 PF12348.8 CLASP_N Family 3 226 227 144.8 2.9e-42 1 CL0020
Cotton_A_35954_CDS 757 949 749 956 PF12348.8 CLASP_N Family 13 207 227 45.2 7.8e-12 1 CL0020
Cotton_A_30338_CDS 15 81 14 88 PF05477.11 SURF2 Family 2 72 236 57.6 1.4e-15 1 CL0131
Cotton_A_30338_CDS 116 717 116 717 PF00888.22 Cullin Family 1 618 618 727.5 1.4e-218 1 No_clan
Cotton_A_30338_CDS 749 810 749 811 PF10557.9 Cullin_Nedd8 Domain 1 62 63 91.3 2.8e-26 1 CL0123
Cotton_A_17510_CDS 28 171 28 171 PF00810.18 ER_lumen_recept Family 1 147 147 179.0 9.6e-53 1 CL0141
Cotton_A_13674_CDS 27 160 24 173 PF00407.19 Bet_v_1 Domain 5 137 151 36.2 5.1e-09 1 CL0209
Cotton_A_38424_CDS 83 304 83 305 PF07859.13 Abhydrolase_3 Domain 1 210 211 180.0 5.3e-53 1 CL0028
Cotton_A_15407_CDS 113 672 113 672 PF10433.9 MMS1_N Domain 1 489 489 342.2 4.5e-102 1 No_clan
Cotton_A_15407_CDS 997 1393 995 1433 PF03178.15 CPSF_A Family 3 317 322 95.8 3e-27 1 CL0186
Cotton_A_03414_CDS 182 390 181 391 PF00337.22 Gal-bind_lectin Domain 2 133 134 165.9 3.1e-49 1 CL0004
Cotton_A_03414_CDS 551 655 547 660 PF01762.21 Galactosyl_T Family 80 187 195 60.6 1.7e-16 1 CL0110
Cotton_A_38264_CDS 115 404 115 404 PF08392.12 FAE1_CUT1_RppA Family 1 290 290 465.1 8.1e-140 1 CL0046
Cotton_A_38264_CDS 421 501 418 502 PF08541.10 ACP_syn_III_C Domain 12 89 90 42.2 6.6e-11 1 CL0046
Cotton_A_03364_CDS 10 108 10 109 PF03195.14 LOB Family 1 98 99 125.9 7.2e-37 1 No_clan
Cotton_A_07072_CDS 42 166 42 167 PF01138.21 RNase_PH Domain 1 131 132 98.8 3.3e-28 1 CL0329
Cotton_A_07072_CDS 170 231 170 235 PF03725.15 RNase_PH_C Domain 1 63 67 31.4 1.4e-07 1 No_clan
Cotton_A_03510_CDS 144 265 143 267 PF04488.15 Gly_transf_sug Family 2 95 98 91.6 3.7e-26 1 CL0110
Cotton_A_03510_CDS 283 405 282 408 PF04572.12 Gb3_synth Family 2 127 130 95.7 2.4e-27 1 No_clan
Cotton_A_16717_CDS 52 127 45 131 PF00164.25 Ribosom_S12_S23 Family 24 105 114 96.3 8.2e-28 1 CL0021
Cotton_A_11995_CDS 18 107 9 107 PF14368.6 LTP_2 Family 10 97 97 51.1 1.1e-13 1 CL0482
Cotton_A_03357_CDS 81 412 79 412 PF00456.21 Transketolase_N Domain 4 334 334 497.4 1.6e-149 1 CL0254
Cotton_A_03357_CDS 430 600 428 601 PF02779.24 Transket_pyr Domain 4 176 178 151.2 2.3e-44 1 CL0254
Cotton_A_03357_CDS 625 731 620 731 PF02780.20 Transketolase_C Domain 9 124 124 41.7 9e-11 1 CL0591
Cotton_A_29215_CDS 6 91 5 97 PF12796.7 Ank_2 Repeat 2 73 83 31.0 2.9e-07 1 CL0465
Cotton_A_29215_CDS 177 225 174 225 PF13857.6 Ank_5 Repeat 9 55 56 32.5 7.5e-08 1 CL0465
Cotton_A_23533_CDS 51 103 4 111 PF04081.13 DNA_pol_delta_4 Family 68 120 131 74.0 1.3e-20 1 No_clan
Cotton_A_10977_CDS 69 511 48 512 PF00501.28 AMP-binding Family 17 422 423 353.1 1.7e-105 1 CL0378
Cotton_A_34849_CDS 49 474 48 475 PF00450.22 Peptidase_S10 Domain 2 418 419 458.2 3.6e-137 1 CL0028
Cotton_A_06224_CDS 52 298 52 298 PF00141.23 peroxidase Domain 1 229 229 233.0 3.6e-69 1 CL0617
Cotton_A_08393_CDS 55 267 25 311 PF07690.16 MFS_1 Family 13 189 353 97.0 1e-27 1 CL0015
Cotton_A_15299_CDS 14 230 8 230 PF00195.19 Chal_sti_synt_N Domain 8 225 225 337.1 4.1e-101 1 CL0046
Cotton_A_15299_CDS 240 395 240 396 PF02797.15 Chal_sti_synt_C Domain 1 150 151 202.9 2.4e-60 1 CL0046
Cotton_A_06678_CDS 55 92 54 92 PF00400.32 WD40 Repeat 2 38 38 16.0 0.016 1 CL0186
Cotton_A_06678_CDS 100 135 96 135 PF00400.32 WD40 Repeat 5 38 38 12.3 0.24 1 CL0186
Cotton_A_06678_CDS 158 209 138 215 PF12894.7 ANAPC4_WD40 Repeat 34 86 92 29.2 8.6e-07 1 CL0186
Cotton_A_06678_CDS 244 276 239 276 PF00400.32 WD40 Repeat 7 38 38 33.4 5.4e-08 1 CL0186
Cotton_A_27622_CDS 3 200 1 200 PF04882.12 Peroxin-3 Family 250 470 470 52.0 5.4e-14 1 No_clan
Cotton_A_20702_CDS 51 198 48 198 PF04043.15 PMEI Domain 5 154 154 93.8 1.3e-26 1 No_clan
Cotton_A_20702_CDS 246 337 246 338 PF01095.19 Pectinesterase Family 1 92 298 107.5 5.2e-31 1 CL0268
Cotton_A_31527_CDS 123 182 122 184 PF13812.6 PPR_3 Repeat 2 61 63 18.1 0.0021 1 CL0020
Cotton_A_31527_CDS 235 268 235 268 PF12854.7 PPR_1 Repeat 1 34 34 27.5 1.8e-06 1 CL0020
Cotton_A_31527_CDS 274 311 274 312 PF13041.6 PPR_2 Repeat 1 38 50 43.5 2.7e-11 1 CL0020
Cotton_A_31527_CDS 402 461 402 462 PF13812.6 PPR_3 Repeat 1 60 63 44.8 9.8e-12 1 CL0020
Cotton_A_30415_CDS 106 198 103 201 PF01127.22 Sdh_cyt Family 4 95 121 61.5 7.6e-17 1 CL0335
Cotton_A_37766_CDS 31 136 31 137 PF04398.12 DUF538 Family 1 111 112 125.8 9.8e-37 1 No_clan
Cotton_A_11487_CDS 626 687 626 687 PF13855.6 LRR_8 Repeat 1 61 61 34.6 1.1e-08 1 CL0022
Cotton_A_11487_CDS 778 798 778 799 PF00560.33 LRR_1 Repeat 1 21 23 9.7 1.4 1 CL0022
Cotton_A_11487_CDS 801 860 800 860 PF13855.6 LRR_8 Repeat 2 61 61 28.1 1.3e-06 1 CL0022
Cotton_A_11487_CDS 969 1025 967 1025 PF13855.6 LRR_8 Repeat 5 61 61 31.3 1.3e-07 1 CL0022
Cotton_A_09474_CDS 22 118 22 120 PF03195.14 LOB Family 1 96 99 107.4 4.2e-31 1 No_clan
Cotton_A_07531_CDS 33 65 33 65 PF06376.12 AGP Family 1 36 36 67.5 6.5e-19 1 No_clan
Cotton_A_31988_CDS 29 244 29 246 PF03332.13 PMM Family 1 219 221 367.8 2e-110 1 CL0137
Cotton_A_14871_CDS 4 325 4 325 PF01112.18 Asparaginase_2 Domain 1 306 306 368.0 3e-110 1 CL0052
Cotton_A_11893_CDS 249 282 249 284 PF00320.27 GATA Domain 1 34 36 55.4 3.3e-15 1 CL0167
Cotton_A_00905_CDS 39 151 37 153 PF07732.15 Cu-oxidase_3 Domain 3 117 119 139.4 5.3e-41 1 CL0026
Cotton_A_00905_CDS 164 314 163 316 PF00394.22 Cu-oxidase Domain 2 157 159 142.6 1.1e-41 1 CL0026
Cotton_A_00905_CDS 436 558 416 560 PF07731.14 Cu-oxidase_2 Domain 23 135 137 133.4 4.2e-39 1 CL0026
Cotton_A_12059_CDS 22 272 21 273 PF00139.19 Lectin_legB Domain 2 248 249 278.4 5.4e-83 1 CL0004
Cotton_A_12059_CDS 343 611 343 613 PF00069.25 Pkinase Domain 1 260 264 159.5 9.9e-47 1 CL0016
Cotton_A_16966_CDS 75 205 73 205 PF02531.16 PsaD Family 3 136 136 228.3 1.8e-68 1 No_clan
Cotton_A_10227_CDS 74 388 74 395 PF16363.5 GDP_Man_Dehyd Domain 1 323 332 175.7 1.6e-51 1 CL0063
Cotton_A_03021_CDS 187 345 183 346 PF00650.20 CRAL_TRIO Domain 9 158 159 86.0 2.2e-24 1 CL0512
Cotton_A_09770_CDS 16 124 11 131 PF00892.20 EamA Family 8 112 137 45.9 6e-12 1 CL0184
Cotton_A_15254_CDS 7 153 7 155 PF14215.6 bHLH-MYC_N Family 1 172 175 76.3 3.3e-21 1 CL0161
Cotton_A_09970_CDS 45 238 30 251 PF04997.12 RNA_pol_Rpb1_1 Domain 42 219 312 35.1 8.9e-09 1 No_clan
Cotton_A_09970_CDS 316 474 316 475 PF00623.20 RNA_pol_Rpb1_2 Domain 1 165 166 116.0 2e-33 1 No_clan
Cotton_A_09970_CDS 479 626 478 627 PF04983.18 RNA_pol_Rpb1_3 Domain 2 156 157 63.1 2.8e-17 1 No_clan
Cotton_A_09970_CDS 694 755 675 792 PF05000.17 RNA_pol_Rpb1_4 Domain 19 81 108 41.6 9.3e-11 1 No_clan
Cotton_A_09970_CDS 804 1225 804 1228 PF04998.17 RNA_pol_Rpb1_5 Domain 1 264 267 32.6 5.5e-08 1 No_clan
Cotton_A_09970_CDS 1369 1442 1369 1442 PF11523.8 DUF3223 Family 1 75 75 83.2 1.7e-23 1 No_clan
Cotton_A_37735_CDS 7 83 1 84 PF09118.11 DUF1929 Domain 25 95 96 79.1 2.2e-22 1 CL0159
Cotton_A_14477_CDS 11 99 9 100 PF02362.21 B3 Family 3 100 101 51.7 6.1e-14 1 CL0405
Cotton_A_14477_CDS 226 320 226 322 PF02362.21 B3 Family 1 99 101 53.3 2e-14 1 CL0405
Cotton_A_14477_CDS 425 507 416 511 PF02362.21 B3 Family 10 96 101 47.0 1.8e-12 1 CL0405
Cotton_A_31765_CDS 174 230 174 230 PF06886.11 TPX2 Family 1 57 57 66.3 2.1e-18 1 No_clan
Cotton_A_20388_CDS 109 152 108 152 PF13639.6 zf-RING_2 Domain 2 44 44 50.8 1.5e-13 1 CL0229
Cotton_A_04406_CDS 15 367 13 367 PF03514.14 GRAS Family 3 374 374 110.0 1.2e-31 1 CL0063
Cotton_A_08130_CDS 182 288 181 310 PF00561.20 Abhydrolase_1 Domain 3 107 257 70.1 2.3e-19 1 CL0028
Cotton_A_24442_CDS 55 145 53 145 PF00254.28 FKBP_C Domain 3 94 94 118.5 1.2e-34 1 CL0487
Cotton_A_24442_CDS 172 261 169 262 PF00254.28 FKBP_C Domain 4 93 94 58.7 5.5e-16 1 CL0487
Cotton_A_24442_CDS 287 380 286 381 PF00254.28 FKBP_C Domain 2 93 94 78.0 5e-22 1 CL0487
Cotton_A_24442_CDS 484 517 484 517 PF00515.28 TPR_1 Repeat 1 34 34 33.8 1.9e-08 1 CL0020
Cotton_A_40337_CDS 1 61 1 62 PF00223.19 PsaA_PsaB Family 657 717 718 94.5 4.9e-27 1 No_clan
Cotton_A_21159_CDS 511 780 511 784 PF00069.25 Pkinase Domain 1 258 264 155.1 2.1e-45 1 CL0016
Cotton_A_04104_CDS 21 91 21 91 PF02672.15 CP12 Family 1 70 70 85.3 3.7e-24 1 No_clan
Cotton_A_31791_CDS 210 290 210 295 PF00439.25 Bromodomain Domain 1 79 84 73.0 1.5e-20 1 No_clan
Cotton_A_31791_CDS 360 422 359 423 PF17035.5 BET Domain 2 63 64 57.7 9.9e-16 1 CL0665
Cotton_A_00757_CDS 1 48 1 51 PF07885.16 Ion_trans_2 Family 29 76 79 39.6 3.9e-10 1 CL0030
Cotton_A_00757_CDS 147 230 145 232 PF00027.29 cNMP_binding Domain 3 87 89 49.7 2.9e-13 1 CL0029
Cotton_A_00757_CDS 277 360 276 368 PF12796.7 Ank_2 Repeat 2 75 83 44.1 2.4e-11 1 CL0465
Cotton_A_00757_CDS 372 428 361 432 PF12796.7 Ank_2 Repeat 29 79 83 31.5 2.1e-07 1 CL0465
Cotton_A_00757_CDS 487 558 486 558 PF11834.8 KHA Family 2 67 67 70.3 1.1e-19 1 No_clan
Cotton_A_18848_CDS 44 131 29 150 PF00390.19 malic Domain 47 126 182 45.6 6.5e-12 1 CL0603
Cotton_A_12710_CDS 86 286 86 286 PF01397.21 Terpene_synth Domain 1 192 192 143.7 5.4e-42 1 No_clan
Cotton_A_12710_CDS 329 593 329 594 PF03936.16 Terpene_synth_C Domain 1 266 267 240.9 1.5e-71 1 CL0613
Cotton_A_34109_CDS 28 262 27 264 PF00262.18 Calreticulin Family 1 253 367 208.4 1.4e-61 1 CL0004
Cotton_A_34109_CDS 264 337 261 337 PF00262.18 Calreticulin Family 293 367 367 75.8 2.8e-21 1 CL0004
Cotton_A_19407_CDS 19 106 17 109 PF02362.21 B3 Family 3 98 101 50.0 2e-13 1 CL0405
Cotton_A_19407_CDS 292 382 289 383 PF02362.21 B3 Family 4 99 101 67.3 8.2e-19 1 CL0405
Cotton_A_07077_CDS 33 73 32 73 PF08263.12 LRRNT_2 Family 2 41 41 34.0 2.7e-08 1 No_clan
Cotton_A_07077_CDS 393 449 389 449 PF13855.6 LRR_8 Repeat 5 61 61 35.7 5.5e-09 1 CL0022
Cotton_A_07077_CDS 603 877 599 877 PF07714.17 Pkinase_Tyr Domain 5 259 259 116.4 1.3e-33 1 CL0016
Cotton_A_17990_CDS 123 269 45 271 PF01086.17 Clathrin_lg_ch Family 106 228 230 45.1 1.2e-11 1 No_clan
Cotton_A_22144_CDS 3 140 1 165 PF00069.25 Pkinase Domain 82 199 264 70.1 1.8e-19 1 CL0016
Cotton_A_05325_CDS 53 135 9 162 PF00069.25 Pkinase Domain 73 153 264 76.2 2.6e-21 1 CL0016
Cotton_A_07883_CDS 25 121 22 122 PF03171.20 2OG-FeII_Oxy Domain 4 100 101 75.2 4.6e-21 1 CL0029
Cotton_A_06768_CDS 68 353 68 353 PF13292.6 DXP_synthase_N Family 1 273 273 365.6 1.3e-109 1 CL0254
Cotton_A_06768_CDS 391 551 388 553 PF02779.24 Transket_pyr Domain 4 174 178 136.8 5.9e-40 1 CL0254
Cotton_A_06768_CDS 569 693 569 693 PF02780.20 Transketolase_C Domain 1 124 124 103.7 5.9e-30 1 CL0591
Cotton_A_03307_CDS 154 471 154 472 PF10250.9 O-FucT Family 1 335 336 184.3 4.8e-54 1 CL0113
Cotton_A_32163_CDS 51 92 49 92 PF00400.32 WD40 Repeat 3 38 38 20.1 0.00082 1 CL0186
Cotton_A_32163_CDS 96 134 96 134 PF00400.32 WD40 Repeat 1 38 38 26.6 7.5e-06 1 CL0186
Cotton_A_32163_CDS 142 176 138 176 PF00400.32 WD40 Repeat 5 38 38 23.5 7.1e-05 1 CL0186
Cotton_A_32163_CDS 181 218 180 218 PF00400.32 WD40 Repeat 2 38 38 23.3 8.1e-05 1 CL0186
Cotton_A_32163_CDS 401 433 395 433 PF00400.32 WD40 Repeat 6 38 38 15.7 0.021 1 CL0186
Cotton_A_32163_CDS 482 514 477 515 PF00400.32 WD40 Repeat 6 37 38 16.5 0.012 1 CL0186
Cotton_A_32163_CDS 577 609 572 609 PF00400.32 WD40 Repeat 6 37 38 26.5 8.2e-06 1 CL0186
Cotton_A_32163_CDS 657 694 656 694 PF00400.32 WD40 Repeat 2 38 38 31.2 2.7e-07 1 CL0186
Cotton_A_32163_CDS 797 897 795 929 PF04003.12 Utp12 Family 3 106 107 72.3 3.6e-20 1 No_clan
Cotton_A_07183_CDS 83 358 78 358 PF07714.17 Pkinase_Tyr Domain 6 259 259 160.7 4e-47 1 CL0016
Cotton_A_23492_CDS 65 165 37 165 PF00134.23 Cyclin_N Domain 29 127 127 83.5 1e-23 1 CL0065
Cotton_A_23492_CDS 168 262 167 288 PF02984.19 Cyclin_C Domain 2 92 119 33.0 5.3e-08 1 CL0065
Cotton_A_10209_CDS 65 108 64 108 PF13639.6 zf-RING_2 Domain 2 44 44 49.3 4.6e-13 1 CL0229
Cotton_A_28816_CDS 58 151 58 152 PF06749.12 DUF1218 Family 1 90 91 89.3 1.8e-25 1 No_clan
Cotton_A_14813_CDS 17 81 10 93 PF12763.7 EF-hand_4 Family 10 73 104 37.0 2.5e-09 1 CL0220
Cotton_A_14813_CDS 162 194 162 194 PF16880.5 EHD_N Family 1 33 33 53.3 1.8e-14 1 No_clan
Cotton_A_14813_CDS 199 365 199 366 PF00350.23 Dynamin_N Domain 1 167 168 33.0 5.8e-08 1 CL0023
Cotton_A_14813_CDS 441 543 437 543 PF18150.1 DUF5600 Domain 5 107 107 127.2 3.5e-37 1 No_clan
Cotton_A_09937_CDS 132 252 132 253 PF09335.11 SNARE_assoc Family 1 119 120 58.6 8.4e-16 1 No_clan
Cotton_A_40305_CDS 32 113 29 119 PF16203.5 ERCC3_RAD25_C Domain 36 116 247 114.4 4.8e-33 1 CL0023
Cotton_A_25865_CDS 10 75 9 75 PF00226.31 DnaJ Domain 2 63 63 88.8 1.8e-25 1 CL0392
Cotton_A_11163_CDS 128 188 127 188 PF04117.12 Mpv17_PMP22 Family 2 62 62 56.1 3.1e-15 1 No_clan
Cotton_A_30311_CDS 6 56 5 77 PF03650.13 MPC Family 2 52 110 66.1 2.7e-18 1 CL0141
Cotton_A_30311_CDS 86 138 81 144 PF03650.13 MPC Family 46 98 110 56.0 3.6e-15 1 CL0141
Cotton_A_16139_CDS 120 280 115 281 PF01025.19 GrpE Family 6 165 166 153.5 3.8e-45 1 No_clan
Cotton_A_03298_CDS 167 211 162 211 PF00010.26 HLH Domain 6 53 53 33.6 2.8e-08 1 No_clan
Cotton_A_20927_CDS 35 142 29 160 PF05633.11 BPS1 Family 39 153 388 27.6 1.4e-06 1 CL0133
Cotton_A_20927_CDS 171 325 162 331 PF05633.11 BPS1 Family 225 381 388 31.9 7.1e-08 1 CL0133
Cotton_A_32442_CDS 27 337 27 338 PF00657.22 Lipase_GDSL Family 1 197 200 52.5 5.8e-14 1 CL0264
Cotton_A_25580_CDS 18 92 16 121 PF01412.18 ArfGap Domain 3 75 117 97.3 6e-28 1 No_clan
Cotton_A_17956_CDS 10 85 10 85 PF12609.8 DUF3774 Family 1 74 74 108.8 2e-31 1 No_clan
Cotton_A_32728_CDS 6 151 4 154 PF00582.26 Usp Domain 4 136 141 30.8 3.5e-07 1 CL0039
Cotton_A_32728_CDS 456 701 451 707 PF07714.17 Pkinase_Tyr Domain 6 253 259 116.5 1.2e-33 1 CL0016
Cotton_A_32728_CDS 731 798 730 799 PF04564.15 U-box Domain 2 70 73 55.4 5.2e-15 1 CL0229
Cotton_A_25445_CDS 220 314 220 316 PF12527.8 DUF3727 Family 1 97 98 69.2 2.8e-19 1 No_clan
Cotton_A_19504_CDS 49 713 48 714 PF03169.15 OPT Family 2 615 616 589.9 6.5e-177 1 No_clan
Cotton_A_03783_CDS 14 52 4 52 PF04526.13 DUF568 Family 63 101 101 38.4 1.6e-09 1 No_clan
Cotton_A_24176_CDS 89 258 85 268 PF03215.15 Rad17 Domain 5 175 186 76.3 2.8e-21 1 CL0023
Cotton_A_26512_CDS 16 240 16 240 PF00244.20 14-3-3 Domain 1 222 222 346.5 5.7e-104 1 No_clan
Cotton_A_33273_CDS 11 390 10 390 PF00162.19 PGK Domain 2 378 378 562.2 4.8e-169 1 No_clan
Cotton_A_35458_CDS 2 147 1 147 PF03140.15 DUF247 Family 253 397 397 162.9 1.3e-47 1 No_clan
Cotton_A_20644_CDS 7 278 6 279 PF14938.6 SNAP Domain 2 281 282 379.9 7.4e-114 1 CL0020
Cotton_A_23266_CDS 259 573 202 583 PF12330.8 Haspin_kinase Family 86 344 367 181.6 2e-53 1 CL0016
Cotton_A_01490_CDS 126 189 126 193 PF00542.19 Ribosomal_L12 Domain 1 63 67 78.2 4.5e-22 1 No_clan
Cotton_A_00867_CDS 100 191 99 254 PF01823.19 MACPF Domain 2 100 209 57.2 2.5e-15 1 CL0293
Cotton_A_19908_CDS 63 224 51 241 PF00501.28 AMP-binding Family 16 190 423 104.9 3.7e-30 1 CL0378
Cotton_A_39390_CDS 70 163 69 168 PF01852.19 START Domain 2 97 209 55.9 3.6e-15 1 CL0209
Cotton_A_16118_CDS 78 162 78 174 PF01453.24 B_lectin Domain 1 91 105 55.2 8.5e-15 1 No_clan
Cotton_A_16118_CDS 242 309 182 311 PF00954.20 S_locus_glycop Domain 43 109 111 34.4 2.5e-08 1 No_clan
Cotton_A_16118_CDS 518 798 515 802 PF00069.25 Pkinase Domain 4 257 264 173.8 4.3e-51 1 CL0016
Cotton_A_31967_CDS 9 214 5 236 PF00931.22 NB-ARC Domain 12 222 252 184.2 2.3e-54 1 CL0023
Cotton_A_29697_CDS 88 575 88 578 PF00118.24 Cpn60_TCP1 Family 1 488 491 497.9 2.8e-149 1 No_clan
Cotton_A_23749_CDS 43 107 41 115 PF01883.19 FeS_assembly_P Domain 7 66 74 34.5 1.7e-08 1 CL0232
Cotton_A_19386_CDS 29 539 25 543 PF01602.20 Adaptin_N Family 5 519 524 435.1 3.4e-130 1 CL0020
Cotton_A_19386_CDS 622 767 621 768 PF08752.10 COP-gamma_platf Domain 2 151 152 187.3 1.7e-55 1 CL0159
Cotton_A_19386_CDS 770 884 770 884 PF16381.5 Coatomer_g_Cpla Domain 1 115 115 127.8 2.1e-37 1 CL0545
Cotton_A_35294_CDS 10 132 9 141 PF00582.26 Usp Domain 4 134 141 27.6 3.5e-06 1 CL0039
Cotton_A_35294_CDS 369 574 366 640 PF00069.25 Pkinase Domain 4 203 264 153.7 5.7e-45 1 CL0016
Cotton_A_03742_CDS 71 144 59 157 PF03351.17 DOMON Domain 20 98 125 37.8 1.9e-09 1 CL0559
Cotton_A_03742_CDS 210 330 209 334 PF03188.16 Cytochrom_B561 Family 2 130 137 26.4 6.1e-06 1 CL0328
Cotton_A_17587_CDS 85 270 84 271 PF00009.27 GTP_EFTU Domain 2 193 194 165.6 9.3e-49 1 CL0023
Cotton_A_17587_CDS 294 364 294 364 PF03144.25 GTP_EFTU_D2 Domain 1 74 74 37.7 2e-09 1 CL0575
Cotton_A_17587_CDS 461 546 460 549 PF00679.24 EFG_C Domain 2 86 89 80.6 6.4e-23 1 CL0437
Cotton_A_20381_CDS 96 118 96 118 PF00560.33 LRR_1 Repeat 1 23 23 13.4 0.092 1 CL0022
Cotton_A_05018_CDS 54 92 52 93 PF08263.12 LRRNT_2 Family 3 40 41 44.5 1.4e-11 1 No_clan
Cotton_A_05018_CDS 440 691 436 691 PF07714.17 Pkinase_Tyr Domain 14 259 259 69.2 3.3e-19 1 CL0016
Cotton_A_21162_CDS 20 85 20 88 PF00076.22 RRM_1 Domain 1 64 70 30.0 3.5e-07 1 CL0221
Cotton_A_01192_CDS 128 291 104 321 PF07714.17 Pkinase_Tyr Domain 49 205 259 93.5 1.3e-26 1 CL0016
Cotton_A_17749_CDS 1 129 1 129 PF04561.14 RNA_pol_Rpb2_2 Domain 61 190 190 113.3 1e-32 1 No_clan
Cotton_A_17749_CDS 190 258 190 258 PF04565.16 RNA_pol_Rpb2_3 Domain 1 68 68 86.0 1.5e-24 1 No_clan
Cotton_A_17749_CDS 395 788 394 789 PF00562.28 RNA_pol_Rpb2_6 Domain 2 385 390 401.9 3e-120 1 CL0410
Cotton_A_24202_CDS 36 73 30 73 PF03828.19 PAP_assoc Family 24 62 62 26.7 4.7e-06 1 No_clan
Cotton_A_34167_CDS 130 291 129 292 PF03031.18 NIF Family 2 155 156 174.1 1.7e-51 1 CL0137
Cotton_A_11731_CDS 119 286 119 287 PF01612.20 DNA_pol_A_exo1 Domain 1 175 176 148.9 1.2e-43 1 CL0219
Cotton_A_11731_CDS 355 398 354 401 PF00570.23 HRDC Domain 2 45 68 30.5 2.6e-07 1 CL0426
Cotton_A_00710_CDS 70 161 70 161 PF16656.5 Pur_ac_phosph_N Domain 1 94 94 74.1 9.9e-21 1 CL0159
Cotton_A_00710_CDS 172 370 171 370 PF00149.28 Metallophos Domain 2 204 204 90.2 2.5e-25 1 CL0163
Cotton_A_00710_CDS 396 453 396 457 PF14008.6 Metallophos_C Domain 1 58 63 64.4 1.3e-17 1 No_clan
Cotton_A_03506_CDS 143 189 142 190 PF13920.6 zf-C3HC4_3 Domain 2 49 50 35.0 9.3e-09 1 CL0229
Cotton_A_21168_CDS 35 72 31 72 PF08263.12 LRRNT_2 Family 5 41 41 42.2 7.4e-11 1 No_clan
Cotton_A_21168_CDS 114 170 113 173 PF13855.6 LRR_8 Repeat 2 58 61 34.2 1.5e-08 1 CL0022
Cotton_A_34237_CDS 658 862 656 863 PF00924.18 MS_channel Family 3 205 206 87.3 1e-24 1 No_clan
Cotton_A_06102_CDS 206 292 205 318 PF02338.19 OTU Family 2 93 127 43.8 3.2e-11 1 CL0125
Cotton_A_31827_CDS 13 35 12 36 PF13912.6 zf-C2H2_6 Domain 2 24 27 20.7 0.00031 1 CL0361
Cotton_A_31827_CDS 215 239 214 240 PF13912.6 zf-C2H2_6 Domain 2 26 27 37.5 1.6e-09 1 CL0361
Cotton_A_31827_CDS 294 318 294 320 PF13912.6 zf-C2H2_6 Domain 1 25 27 49.7 2.4e-13 1 CL0361
Cotton_A_20695_CDS 463 767 463 767 PF04091.12 Sec15 Family 1 316 316 257.0 2.6e-76 1 CL0295
Cotton_A_27355_CDS 103 155 102 161 PF00403.26 HMA Domain 2 58 62 54.1 1.5e-14 1 No_clan
Cotton_A_27083_CDS 3 94 1 95 PF07714.17 Pkinase_Tyr Domain 182 258 259 26.5 3.6e-06 1 CL0016
Cotton_A_23408_CDS 78 286 78 286 PF01734.22 Patatin Family 1 204 204 78.0 1.1e-21 1 CL0323
Cotton_A_30116_CDS 155 195 155 195 PF13639.6 zf-RING_2 Domain 1 44 44 31.2 2.1e-07 1 CL0229
Cotton_A_21948_CDS 84 175 82 176 PF01329.19 Pterin_4a Domain 3 90 91 88.9 1.9e-25 1 No_clan
Cotton_A_37567_CDS 124 365 122 366 PF12146.8 Hydrolase_4 Family 3 238 239 204.2 1.8e-60 1 CL0028
Cotton_A_15288_CDS 5 296 4 297 PF05653.14 Mg_trans_NIPA Family 2 294 295 443.2 3.7e-133 1 CL0184
Cotton_A_30312_CDS 90 275 90 275 PF00551.19 Formyl_trans_N Domain 1 181 181 193.1 3.4e-57 1 No_clan
Cotton_A_37720_CDS 26 187 13 191 PF10033.9 ATG13 Family 28 183 240 72.9 3.2e-20 1 CL0651
Cotton_A_06744_CDS 42 94 42 95 PF13833.6 EF-hand_8 Domain 1 54 55 49.2 3.5e-13 1 CL0220
Cotton_A_11530_CDS 93 419 90 426 PF00295.17 Glyco_hydro_28 Domain 5 311 325 266.2 3.5e-79 1 CL0268
Cotton_A_02882_CDS 128 245 126 250 PF18076.1 FGAR-AT_N Domain 3 107 115 72.4 2.8e-20 1 No_clan
Cotton_A_02882_CDS 272 321 272 321 PF18072.1 FGAR-AT_linker Domain 1 49 50 44.8 1.3e-11 1 No_clan
Cotton_A_02882_CDS 535 689 533 691 PF02769.22 AIRS_C Domain 3 154 156 81.6 6.6e-23 1 No_clan
Cotton_A_02882_CDS 945 1074 934 1075 PF02769.22 AIRS_C Domain 13 155 156 57.2 2e-15 1 No_clan
Cotton_A_02882_CDS 1142 1411 1142 1411 PF13507.6 GATase_5 Domain 1 260 260 343.4 6.1e-103 1 CL0014
Cotton_A_07014_CDS 56 285 56 293 PF00225.23 Kinesin Domain 1 223 333 221.0 1.9e-65 1 CL0023
Cotton_A_38440_CDS 26 66 25 66 PF08263.12 LRRNT_2 Family 2 41 41 30.0 4.6e-07 1 No_clan
Cotton_A_38440_CDS 156 198 155 198 PF13855.6 LRR_8 Repeat 19 61 61 27.8 1.5e-06 1 CL0022
Cotton_A_38440_CDS 415 680 412 680 PF07714.17 Pkinase_Tyr Domain 4 259 259 136.5 9.6e-40 1 CL0016
Cotton_A_20746_CDS 27 70 26 70 PF08263.12 LRRNT_2 Family 2 41 41 37.3 2.4e-09 1 No_clan
Cotton_A_20746_CDS 98 158 98 158 PF13855.6 LRR_8 Repeat 1 61 61 29.0 6.5e-07 1 CL0022
Cotton_A_20746_CDS 388 447 387 447 PF13855.6 LRR_8 Repeat 2 61 61 30.3 2.7e-07 1 CL0022
Cotton_A_20746_CDS 532 591 531 591 PF13855.6 LRR_8 Repeat 2 61 61 33.8 2.1e-08 1 CL0022
Cotton_A_20746_CDS 608 663 603 663 PF13855.6 LRR_8 Repeat 5 61 61 27.3 2.2e-06 1 CL0022
Cotton_A_20746_CDS 782 1050 780 1052 PF00069.25 Pkinase Domain 3 259 264 152.4 1.5e-44 1 CL0016
Cotton_A_38785_CDS 39 326 34 327 PF00141.23 peroxidase Domain 2 228 229 233.7 2.2e-69 1 CL0617
Cotton_A_16606_CDS 80 197 78 199 PF15413.6 PH_11 Domain 3 103 105 54.8 1e-14 1 CL0266
Cotton_A_16606_CDS 404 756 404 756 PF01237.18 Oxysterol_BP Family 1 373 373 409.7 9.8e-123 1 No_clan
Cotton_A_34003_CDS 6 65 5 65 PF13855.6 LRR_8 Repeat 2 61 61 47.3 1.3e-12 1 CL0022
Cotton_A_34003_CDS 82 137 82 137 PF13855.6 LRR_8 Repeat 7 61 61 37.5 1.5e-09 1 CL0022
Cotton_A_34003_CDS 173 187 171 189 PF13516.6 LRR_6 Repeat 3 17 24 11.8 0.19 1 CL0022
Cotton_A_34003_CDS 276 336 276 336 PF13855.6 LRR_8 Repeat 1 61 61 28.0 1.4e-06 1 CL0022
Cotton_A_34003_CDS 438 491 432 491 PF13855.6 LRR_8 Repeat 8 61 61 30.2 2.7e-07 1 CL0022
Cotton_A_10683_CDS 76 106 76 107 PF14383.6 VARLMGL Domain 1 31 32 55.9 2.1e-15 1 No_clan
Cotton_A_10683_CDS 733 880 730 880 PF14309.6 DUF4378 Family 4 165 165 83.5 2.1e-23 1 No_clan
Cotton_A_18648_CDS 27 298 26 300 PF00248.21 Aldo_ket_red Domain 4 292 294 175.2 1.7e-51 1 No_clan
Cotton_A_03540_CDS 12 173 10 174 PF00160.21 Pro_isomerase Domain 3 157 158 126.2 1.3e-36 1 CL0475
Cotton_A_17643_CDS 280 404 279 405 PF03109.16 ABC1 Family 2 118 119 108.7 1.8e-31 1 CL0016
Cotton_A_26430_CDS 22 167 22 168 PF04043.15 PMEI Domain 1 151 154 43.1 5.4e-11 1 No_clan
Cotton_A_28784_CDS 1 72 1 92 PF00078.27 RVT_1 Family 132 207 222 53.9 1.7e-14 1 CL0027
Cotton_A_28784_CDS 137 172 135 176 PF17921.1 Integrase_H2C2 Domain 3 36 58 29.8 4.7e-07 1 CL0361
Cotton_A_02088_CDS 36 242 36 243 PF00314.17 Thaumatin Domain 1 213 214 244.7 7.3e-73 1 CL0293
Cotton_A_32035_CDS 14 196 14 198 PF00005.27 ABC_tran Domain 1 135 137 56.4 4.3e-15 1 CL0023
Cotton_A_32035_CDS 350 562 349 562 PF01061.24 ABC2_membrane Family 2 210 210 154.8 2e-45 1 CL0181
Cotton_A_32035_CDS 567 630 567 630 PF08370.11 PDR_assoc Family 1 65 65 86.1 9.6e-25 1 No_clan
Cotton_A_32035_CDS 733 885 733 885 PF00005.27 ABC_tran Domain 1 137 137 70.5 1.9e-19 1 CL0023
Cotton_A_32035_CDS 1030 1244 1030 1244 PF01061.24 ABC2_membrane Family 1 210 210 196.7 3e-58 1 CL0181
Cotton_A_32035_CDS 1370 1552 1370 1554 PF00005.27 ABC_tran Domain 1 135 137 56.1 5.6e-15 1 CL0023
Cotton_A_32035_CDS 1706 1913 1705 1917 PF01061.24 ABC2_membrane Family 2 205 210 130.0 7.9e-38 1 CL0181
Cotton_A_32035_CDS 1918 1971 1911 1973 PF08370.11 PDR_assoc Family 9 62 65 81.6 2.4e-23 1 No_clan
Cotton_A_32035_CDS 2056 2207 2055 2207 PF00005.27 ABC_tran Domain 2 137 137 65.0 9.8e-18 1 CL0023
Cotton_A_37570_CDS 130 356 130 357 PF02485.21 Branch Family 1 246 247 271.6 6e-81 1 CL0110
Cotton_A_38822_CDS 18 69 17 69 PF00847.20 AP2 Domain 2 54 54 45.8 5.3e-12 1 CL0081
Cotton_A_03187_CDS 25 342 24 343 PF00332.18 Glyco_hydro_17 Domain 2 312 313 202.4 1.3e-59 1 CL0058
Cotton_A_03187_CDS 361 432 361 433 PF07983.13 X8 Domain 1 75 76 59.1 5.1e-16 1 No_clan
Cotton_A_35619_CDS 33 86 30 87 PF00403.26 HMA Domain 4 61 62 54.5 1.2e-14 1 No_clan
Cotton_A_26085_CDS 12 70 12 70 PF08031.12 BBE Domain 1 46 46 81.4 3.7e-23 1 CL0277
Cotton_A_17404_CDS 1 58 1 58 PF01058.22 Oxidored_q6 Family 70 131 131 56.6 2.3e-15 1 No_clan
Cotton_A_07916_CDS 82 106 82 107 PF00642.24 zf-CCCH Family 1 26 27 23.6 3.4e-05 1 CL0537
Cotton_A_07916_CDS 159 181 159 181 PF18044.1 zf-CCCH_4 Domain 1 22 22 32.5 5.2e-08 1 CL0537
Cotton_A_07916_CDS 227 252 227 253 PF00642.24 zf-CCCH Family 1 26 27 42.1 5.5e-11 1 CL0537
Cotton_A_04503_CDS 24 71 24 71 PF12906.7 RINGv Domain 1 48 48 42.8 4.2e-11 1 CL0229
Cotton_A_00229_CDS 52 92 51 95 PF00643.24 zf-B_box Domain 2 40 42 34.5 1.7e-08 1 No_clan
Cotton_A_26796_CDS 1 79 1 82 PF00891.18 Methyltransf_2 Domain 51 135 210 94.1 6.8e-27 1 CL0063
Cotton_A_28075_CDS 50 129 50 131 PF03893.16 Lipase3_N Domain 1 74 76 73.4 1.1e-20 1 CL0028
Cotton_A_28075_CDS 185 346 184 349 PF01764.25 Lipase_3 Family 2 139 142 65.9 3.2e-18 1 CL0028
Cotton_A_16579_CDS 81 518 81 518 PF03372.23 Exo_endo_phos Domain 1 233 233 45.1 8.5e-12 1 CL0530
Cotton_A_08644_CDS 226 572 222 574 PF05701.11 WEMBL Family 7 362 562 450.2 1.1e-134 1 No_clan
Cotton_A_08644_CDS 567 739 566 743 PF05701.11 WEMBL Family 385 558 562 181.5 2.7e-53 1 No_clan
Cotton_A_21919_CDS 55 120 55 140 PF14226.6 DIOX_N Family 1 65 118 59.6 4.6e-16 1 CL0029
Cotton_A_21919_CDS 173 277 170 277 PF03171.20 2OG-FeII_Oxy Domain 4 101 101 85.7 2.5e-24 1 CL0029
Cotton_A_19372_CDS 214 329 214 330 PF00175.21 NAD_binding_1 Domain 1 108 109 103.7 8.1e-30 1 CL0091
Cotton_A_25934_CDS 28 94 15 94 PF14111.6 DUF4283 Domain 15 81 145 45.6 5e-12 1 No_clan
Cotton_A_20062_CDS 19 103 17 111 PF00011.21 HSP20 Family 3 91 102 38.7 8.2e-10 1 CL0190
Cotton_A_33782_CDS 172 220 170 221 PF00847.20 AP2 Domain 3 53 54 52.0 6.1e-14 1 CL0081
Cotton_A_10495_CDS 28 267 19 267 PF00069.25 Pkinase Domain 29 264 264 156.4 8.8e-46 1 CL0016
Cotton_A_14467_CDS 23 186 22 189 PF00291.25 PALP Family 2 167 294 145.7 1.9e-42 1 CL0063
Cotton_A_34446_CDS 11 73 11 73 PF05676.13 NDUF_B7 Family 1 63 63 94.5 2.2e-27 1 CL0351
Cotton_A_30603_CDS 16 141 15 141 PF02365.15 NAM Family 2 126 126 128.5 2.7e-37 1 No_clan
Cotton_A_10432_CDS 19 107 17 109 PF00153.27 Mito_carr Family 3 95 97 60.8 8.9e-17 1 No_clan
Cotton_A_10432_CDS 116 208 111 209 PF00153.27 Mito_carr Family 6 96 97 66.4 1.6e-18 1 No_clan
Cotton_A_10432_CDS 216 307 214 310 PF00153.27 Mito_carr Family 3 94 97 90.0 6.9e-26 1 No_clan
Cotton_A_34334_CDS 145 227 144 229 PF00887.19 ACBP Domain 2 83 85 81.3 4.5e-23 1 CL0632
Cotton_A_17526_CDS 171 533 171 533 PF10250.9 O-FucT Family 1 336 336 240.4 4.3e-71 1 CL0113
Cotton_A_10405_CDS 112 223 112 223 PF02847.17 MA3 Family 1 113 113 81.9 3.1e-23 1 CL0020
Cotton_A_10405_CDS 276 385 275 386 PF02847.17 MA3 Family 2 112 113 94.1 5.2e-27 1 CL0020
Cotton_A_10405_CDS 411 520 410 521 PF02847.17 MA3 Family 2 112 113 60.6 1.2e-16 1 CL0020
Cotton_A_10405_CDS 579 687 578 687 PF02847.17 MA3 Family 2 113 113 95.5 1.8e-27 1 CL0020
Cotton_A_20506_CDS 55 132 50 132 PF14389.6 Lzipper-MIP1 Family 6 84 84 51.4 9.8e-14 1 No_clan
Cotton_A_11997_CDS 124 260 123 260 PF04819.12 DUF716 Family 2 138 138 165.7 4.4e-49 1 No_clan
Cotton_A_25420_CDS 4 101 3 101 PF00438.20 S-AdoMet_synt_N Domain 2 99 99 146.8 2.4e-43 1 No_clan
Cotton_A_25420_CDS 117 238 117 238 PF02772.16 S-AdoMet_synt_M Domain 1 120 120 162.3 4.9e-48 1 No_clan
Cotton_A_25420_CDS 240 381 240 382 PF02773.16 S-AdoMet_synt_C Domain 1 137 138 207.7 6e-62 1 No_clan
Cotton_A_11251_CDS 81 544 81 548 PF02446.17 Glyco_hydro_77 Domain 1 465 467 488.5 2.1e-146 1 CL0058
Cotton_A_36505_CDS 93 151 93 187 PF08488.11 WAK Family 1 62 103 31.1 2.5e-07 1 No_clan
Cotton_A_19730_CDS 103 131 81 131 PF03765.15 CRAL_TRIO_N Domain 27 54 54 28.5 1.3e-06 1 CL0214
Cotton_A_19730_CDS 155 321 154 321 PF00650.20 CRAL_TRIO Domain 2 159 159 122.1 1.7e-35 1 CL0512
Cotton_A_25624_CDS 68 492 68 492 PF00026.23 Asp Family 1 315 315 441.7 1.6e-132 1 CL0129
Cotton_A_25624_CDS 302 335 302 335 PF03489.17 SapB_2 Family 1 34 34 49.6 3.1e-13 1 No_clan
Cotton_A_25624_CDS 366 402 365 402 PF05184.15 SapB_1 Domain 2 38 38 53.1 2.2e-14 1 No_clan
Cotton_A_38194_CDS 17 57 16 58 PF12937.7 F-box-like Domain 7 47 48 34.2 1.8e-08 1 CL0271
Cotton_A_09560_CDS 32 241 23 242 PF03181.15 BURP Family 8 214 215 210.9 1.7e-62 1 No_clan
Cotton_A_26797_CDS 36 86 35 86 PF08100.11 Dimerisation Domain 2 51 51 55.4 4.4e-15 1 CL0123
Cotton_A_34298_CDS 68 236 67 240 PF00485.18 PRK Domain 2 188 197 84.3 9e-24 1 CL0023
Cotton_A_34298_CDS 266 404 249 404 PF01928.21 CYTH Domain 22 179 179 60.4 2e-16 1 CL0273
Cotton_A_24518_CDS 142 220 141 220 PF01169.19 UPF0016 Family 2 75 75 67.0 1.4e-18 1 CL0292
Cotton_A_24518_CDS 272 345 271 345 PF01169.19 UPF0016 Family 2 75 75 73.9 9.4e-21 1 CL0292
Cotton_A_03272_CDS 32 68 32 73 PF01176.19 eIF-1a Domain 1 38 64 36.8 2.6e-09 1 CL0021
Cotton_A_36591_CDS 57 169 29 169 PF08613.11 Cyclin Family 47 161 161 113.2 1.5e-32 1 CL0065
Cotton_A_38547_CDS 10 54 10 56 PF00076.22 RRM_1 Domain 24 67 70 36.5 3.1e-09 1 CL0221
Cotton_A_38547_CDS 80 149 80 151 PF00076.22 RRM_1 Domain 1 68 70 53.7 1.3e-14 1 CL0221
Cotton_A_02658_CDS 37 118 36 118 PF13774.6 Longin Domain 2 84 84 85.8 1.6e-24 1 No_clan
Cotton_A_02658_CDS 133 213 132 217 PF00957.21 Synaptobrevin Family 2 82 89 64.6 5.5e-18 1 CL0445
Cotton_A_37182_CDS 48 428 48 429 PF12819.7 Malectin_like Domain 1 335 336 143.9 6.4e-42 1 CL0202
Cotton_A_37182_CDS 549 812 544 815 PF07714.17 Pkinase_Tyr Domain 7 256 259 170.9 3e-50 1 CL0016
Cotton_A_32429_CDS 1 103 1 110 PF05695.12 DUF825 Family 460 562 1486 196.8 3.8e-58 1 No_clan
Cotton_A_05540_CDS 242 603 241 603 PF03081.15 Exo70 Family 2 376 376 324.2 1.1e-96 1 CL0295
Cotton_A_19906_CDS 27 555 26 556 PF01274.22 Malate_synthase Family 2 525 526 726.7 1.2e-218 1 CL0151
Cotton_A_19336_CDS 6 133 6 133 PF02365.15 NAM Family 1 126 126 133.7 6.6e-39 1 No_clan
Cotton_A_23164_CDS 76 159 76 161 PF02536.14 mTERF Family 1 83 314 40.3 1.8e-10 1 No_clan
Cotton_A_23164_CDS 155 257 151 258 PF02536.14 mTERF Family 156 258 314 38.8 5.2e-10 1 No_clan
Cotton_A_23164_CDS 244 351 233 352 PF02536.14 mTERF Family 210 313 314 57.3 1.2e-15 1 No_clan
Cotton_A_26278_CDS 21 69 21 70 PF13041.6 PPR_2 Repeat 1 48 50 39.5 4.8e-10 1 CL0020
Cotton_A_26278_CDS 98 120 95 125 PF01535.20 PPR Family 4 26 31 13.9 0.047 1 CL0020
Cotton_A_26278_CDS 123 170 123 171 PF13041.6 PPR_2 Repeat 1 49 50 30.1 4.1e-07 1 CL0020
Cotton_A_26278_CDS 198 224 198 225 PF01535.20 PPR Family 4 30 31 10.8 0.46 1 CL0020
Cotton_A_26278_CDS 299 324 299 326 PF01535.20 PPR Family 4 29 31 19.4 0.00086 1 CL0020
Cotton_A_26278_CDS 325 371 324 373 PF13041.6 PPR_2 Repeat 2 48 50 46.5 3e-12 1 CL0020
Cotton_A_26278_CDS 400 423 398 425 PF01535.20 PPR Family 3 26 31 10.3 0.68 1 CL0020
Cotton_A_00386_CDS 15 260 15 260 PF00696.28 AA_kinase Family 1 241 241 122.9 1.6e-35 1 No_clan
Cotton_A_24109_CDS 80 249 79 265 PF00999.21 Na_H_Exchanger Family 3 197 381 54.6 7.4e-15 1 CL0064
Cotton_A_04605_CDS 138 283 138 290 PF06733.15 DEAD_2 Family 1 159 176 119.7 1e-34 1 CL0023
Cotton_A_04605_CDS 565 777 564 778 PF13307.6 Helicase_C_2 Domain 2 170 171 156.5 7.2e-46 1 CL0023
Cotton_A_14148_CDS 8 83 1 91 PF01490.18 Aa_trans Family 64 144 409 30.2 1.8e-07 1 CL0062
Cotton_A_09013_CDS 108 484 107 484 PF00368.18 HMG-CoA_red Family 2 367 367 484.9 1.5e-145 1 No_clan
Cotton_A_09048_CDS 26 84 26 92 PF01152.21 Bac_globin Domain 1 59 121 58.7 6e-16 1 CL0090
Cotton_A_21376_CDS 2 91 1 106 PF00931.22 NB-ARC Domain 23 116 252 53.5 1.8e-14 1 CL0023
Cotton_A_39533_CDS 30 84 29 85 PF00046.29 Homeodomain Domain 2 56 57 61.1 6.4e-17 1 CL0123
Cotton_A_39533_CDS 86 127 86 128 PF02183.18 HALZ Coiled-coil 1 42 43 53.5 2e-14 1 No_clan
Cotton_A_09376_CDS 49 428 48 428 PF00155.21 Aminotran_1_2 Domain 2 363 363 327.7 9.7e-98 1 CL0061
Cotton_A_33085_CDS 10 99 10 99 PF00447.17 HSF_DNA-bind Domain 1 96 96 104.6 3.3e-30 1 CL0123
Cotton_A_09662_CDS 200 352 199 353 PF01343.18 Peptidase_S49 Family 2 153 154 80.7 1e-22 1 CL0127
Cotton_A_09662_CDS 451 599 449 602 PF01343.18 Peptidase_S49 Family 3 150 154 138.8 1.3e-40 1 CL0127
Cotton_A_13250_CDS 41 105 40 107 PF02207.20 zf-UBR Family 2 68 70 47.7 1.3e-12 1 No_clan
Cotton_A_24401_CDS 102 405 102 405 PF00814.25 Peptidase_M22 Family 1 271 271 294.9 6.7e-88 1 CL0108
Cotton_A_10957_CDS 417 503 414 527 PF01909.23 NTP_transf_2 Family 4 73 95 25.7 1.1e-05 1 CL0260
Cotton_A_10957_CDS 611 669 610 669 PF03828.19 PAP_assoc Family 2 62 62 62.6 2.8e-17 1 No_clan
Cotton_A_11538_CDS 7 30 7 31 PF01535.20 PPR Family 1 24 31 21.8 0.00015 1 CL0020
Cotton_A_11538_CDS 35 82 35 84 PF13041.6 PPR_2 Repeat 1 48 50 34.1 2.3e-08 1 CL0020
Cotton_A_11538_CDS 98 134 93 136 PF13812.6 PPR_3 Repeat 6 42 63 15.9 0.0099 1 CL0020
Cotton_A_11538_CDS 168 214 167 216 PF13041.6 PPR_2 Repeat 2 48 50 34.9 1.3e-08 1 CL0020
Cotton_A_11538_CDS 243 270 240 270 PF01535.20 PPR Family 4 31 31 14.2 0.038 1 CL0020
Cotton_A_11538_CDS 271 298 271 300 PF01535.20 PPR Family 1 28 31 24.0 2.8e-05 1 CL0020
Cotton_A_11538_CDS 301 347 299 348 PF13041.6 PPR_2 Repeat 3 49 50 35.8 6.6e-09 1 CL0020
Cotton_A_11538_CDS 375 401 375 402 PF01535.20 PPR Family 4 30 31 14.6 0.029 1 CL0020
Cotton_A_11538_CDS 403 431 403 433 PF01535.20 PPR Family 1 29 31 25.9 7e-06 1 CL0020
Cotton_A_11538_CDS 443 466 439 467 PF01535.20 PPR Family 5 28 31 9.8 0.96 1 CL0020
Cotton_A_11538_CDS 476 500 475 502 PF01535.20 PPR Family 2 26 31 15.6 0.014 1 CL0020
Cotton_A_21005_CDS 69 113 69 113 PF12023.8 DUF3511 Family 1 45 45 87.4 4e-25 1 No_clan
Cotton_A_29510_CDS 29 245 29 246 PF03332.13 PMM Family 1 220 221 364.0 3e-109 1 CL0137
Cotton_A_09346_CDS 258 419 247 438 PF00201.18 UDPGT Family 264 406 499 56.4 2.3e-15 1 CL0113
Cotton_A_29566_CDS 20 257 20 257 PF07160.12 SKA1 Family 1 239 239 273.2 2.2e-81 1 No_clan
Cotton_A_12516_CDS 9 95 9 137 PF18052.1 Rx_N Domain 1 84 93 79.1 2.2e-22 1 No_clan
Cotton_A_12516_CDS 172 411 168 412 PF00931.22 NB-ARC Domain 5 251 252 182.6 7.4e-54 1 CL0023
Cotton_A_34057_CDS 60 214 54 245 PF07159.12 DUF1394 Family 17 176 303 24.2 1.8e-05 1 No_clan
Cotton_A_34057_CDS 355 1201 355 1201 PF05994.11 FragX_IP Family 1 838 838 980.4 6.9e-295 1 No_clan
Cotton_A_38325_CDS 1 36 1 37 PF06364.12 DUF1068 Family 132 167 168 50.1 2.7e-13 1 No_clan
Cotton_A_36474_CDS 31 247 30 263 PF01156.19 IU_nuc_hydro Domain 2 231 305 217.1 4e-64 1 No_clan
Cotton_A_14426_CDS 61 150 59 151 PF01486.17 K-box Family 3 92 93 92.4 1.5e-26 1 No_clan
Cotton_A_28704_CDS 32 97 19 97 PF03951.19 Gln-synt_N Domain 18 83 83 40.4 1.8e-10 1 No_clan
Cotton_A_28704_CDS 124 347 107 352 PF00120.24 Gln-synt_C Domain 22 257 345 55.3 5e-15 1 CL0286
Cotton_A_19765_CDS 89 374 89 377 PF00291.25 PALP Family 1 291 294 224.5 1.9e-66 1 CL0063
Cotton_A_12790_CDS 157 660 157 660 PF03141.16 Methyltransf_29 Family 1 506 506 719.8 1.6e-216 1 CL0063
Cotton_A_04561_CDS 33 238 33 275 PF01301.19 Glyco_hydro_35 Domain 1 208 316 246.8 4.1e-73 1 CL0058
Cotton_A_22794_CDS 24 514 24 515 PF03155.15 Alg6_Alg8 Family 1 483 484 486.5 9.6e-146 1 CL0111
Cotton_A_37256_CDS 30 134 29 134 PF13947.6 GUB_WAK_bind Domain 2 106 106 103.6 8.6e-30 1 No_clan
Cotton_A_39431_CDS 23 79 22 79 PF00831.23 Ribosomal_L29 Family 2 57 57 64.6 5.9e-18 1 CL0346
Cotton_A_26283_CDS 182 224 179 229 PF00170.21 bZIP_1 Family 4 46 64 32.4 7.3e-08 1 CL0018
Cotton_A_26283_CDS 251 326 251 327 PF14144.6 DOG1 Family 1 76 77 107.6 2.8e-31 1 No_clan
Cotton_A_02787_CDS 75 112 75 112 PF01753.18 zf-MYND Domain 1 38 38 34.5 1.6e-08 1 CL0175
Cotton_A_02787_CDS 592 894 592 894 PF00443.29 UCH Family 1 257 257 154.6 3.3e-45 1 CL0125
Cotton_A_31540_CDS 113 132 113 132 PF03106.15 WRKY Domain 1 20 59 28.6 1.2e-06 1 CL0274
Cotton_A_26224_CDS 29 105 29 105 PF03134.19 TB2_DP1_HVA22 Family 1 77 77 94.7 2.4e-27 1 No_clan
Cotton_A_32410_CDS 36 810 35 810 PF01496.19 V_ATPase_I Family 2 813 813 964.9 3e-290 1 No_clan
Cotton_A_29462_CDS 124 256 119 261 PF09334.11 tRNA-synt_1g Family 6 135 391 62.9 2.2e-17 1 CL0039
Cotton_A_29462_CDS 305 499 305 500 PF13603.6 tRNA-synt_1_2 Domain 1 184 185 196.9 2e-58 1 CL0039
Cotton_A_29462_CDS 731 759 724 770 PF00133.22 tRNA-synt_1 Family 562 590 602 27.6 8.6e-07 1 CL0039
Cotton_A_29462_CDS 816 924 814 929 PF08264.13 Anticodon_1 Domain 5 144 152 58.3 8.2e-16 1 CL0258
Cotton_A_11929_CDS 21 67 20 79 PF03004.14 Transposase_24 Family 2 49 142 33.1 5.2e-08 1 No_clan
Cotton_A_30889_CDS 61 156 60 157 PF03168.13 LEA_2 Domain 2 100 101 34.7 2e-08 1 CL0159
Cotton_A_39828_CDS 34 58 31 61 PF01535.20 PPR Family 4 28 31 10.0 0.86 1 CL0020
Cotton_A_39828_CDS 60 106 59 107 PF13041.6 PPR_2 Repeat 2 49 50 43.9 2e-11 1 CL0020
Cotton_A_39828_CDS 192 241 191 242 PF13041.6 PPR_2 Repeat 2 49 50 33.9 2.6e-08 1 CL0020
Cotton_A_39828_CDS 300 324 298 327 PF01535.20 PPR Family 4 28 31 13.0 0.093 1 CL0020
Cotton_A_39828_CDS 328 356 328 358 PF01535.20 PPR Family 1 29 31 29.3 6.1e-07 1 CL0020
Cotton_A_39828_CDS 359 383 359 388 PF01535.20 PPR Family 1 25 31 22.9 6.6e-05 1 CL0020
Cotton_A_39828_CDS 389 435 388 437 PF13041.6 PPR_2 Repeat 2 48 50 43.1 3.4e-11 1 CL0020
Cotton_A_39828_CDS 489 537 489 538 PF13041.6 PPR_2 Repeat 1 49 50 39.0 6.6e-10 1 CL0020
Cotton_A_39828_CDS 565 589 563 591 PF01535.20 PPR Family 3 27 31 14.7 0.028 1 CL0020
Cotton_A_00869_CDS 43 259 36 260 PF03767.14 Acid_phosphat_B Family 13 229 230 260.6 1.2e-77 1 CL0137
Cotton_A_12371_CDS 204 268 204 269 PF00076.22 RRM_1 Domain 1 69 70 42.7 3.6e-11 1 CL0221
Cotton_A_12371_CDS 289 354 289 354 PF00076.22 RRM_1 Domain 1 70 70 42.7 3.7e-11 1 CL0221
Cotton_A_30738_CDS 106 174 106 174 PF00076.22 RRM_1 Domain 1 70 70 60.7 8.5e-17 1 CL0221
Cotton_A_02522_CDS 148 430 124 430 PF01040.18 UbiA Family 20 252 252 121.4 3.9e-35 1 CL0613
Cotton_A_15661_CDS 34 134 33 135 PF13947.6 GUB_WAK_bind Domain 2 105 106 38.1 2.1e-09 1 No_clan
Cotton_A_15661_CDS 350 497 347 504 PF07714.17 Pkinase_Tyr Domain 4 150 259 41.6 8.7e-11 1 CL0016
Cotton_A_30694_CDS 78 144 71 148 PF12796.7 Ank_2 Repeat 19 79 83 45.9 6.6e-12 1 CL0465
Cotton_A_30694_CDS 150 209 142 217 PF12796.7 Ank_2 Repeat 24 78 83 50.4 2.5e-13 1 CL0465
Cotton_A_30694_CDS 333 449 332 449 PF13962.6 PGG Domain 2 116 116 93.8 5.9e-27 1 No_clan
Cotton_A_38643_CDS 146 180 146 181 PF00320.27 GATA Domain 1 35 36 60.6 8e-17 1 CL0167
Cotton_A_35471_CDS 4 197 3 197 PF13869.6 NUDIX_2 Domain 2 188 188 266.2 1.2e-79 1 CL0261
Cotton_A_34922_CDS 6 70 6 71 PF00313.22 CSD Domain 1 65 66 94.3 2.9e-27 1 CL0021
Cotton_A_34922_CDS 121 135 120 137 PF00098.23 zf-CCHC Domain 2 16 18 31.2 1.4e-07 1 CL0511
Cotton_A_02525_CDS 1 59 1 59 PF04783.12 DUF630 Family 1 59 59 93.4 6.7e-27 1 No_clan
Cotton_A_22227_CDS 127 321 127 322 PF01762.21 Galactosyl_T Family 1 194 195 177.8 2.1e-52 1 CL0110
Cotton_A_35160_CDS 85 292 61 300 PF00155.21 Aminotran_1_2 Domain 23 222 363 95.7 3.1e-27 1 CL0061
Cotton_A_07313_CDS 76 100 75 101 PF13912.6 zf-C2H2_6 Domain 2 26 27 25.0 1.3e-05 1 CL0361
Cotton_A_25788_CDS 391 598 387 660 PF07714.17 Pkinase_Tyr Domain 5 206 259 148.3 2.3e-43 1 CL0016
Cotton_A_10264_CDS 21 134 13 134 PF02519.14 Auxin_inducible Family 2 90 90 100.3 5e-29 1 No_clan
Cotton_A_28458_CDS 40 192 39 192 PF04043.15 PMEI Domain 2 154 154 128.7 2.4e-37 1 No_clan
Cotton_A_17999_CDS 263 389 245 393 PF00179.26 UQ_con Domain 19 134 140 73.0 1.8e-20 1 CL0208
Cotton_A_26281_CDS 2 36 1 42 PF12937.7 F-box-like Domain 2 35 48 28.5 1e-06 1 CL0271
Cotton_A_34771_CDS 30 282 30 301 PF00657.22 Lipase_GDSL Family 2 179 200 51.3 1.3e-13 1 CL0264
Cotton_A_17329_CDS 41 107 35 122 PF00128.24 Alpha-amylase Domain 9 76 337 32.4 6.9e-08 1 CL0058
Cotton_A_17329_CDS 348 404 348 404 PF07821.12 Alpha-amyl_C2 Domain 1 58 58 73.4 1.3e-20 1 CL0369
Cotton_A_40679_CDS 13 288 13 288 PF04139.13 Rad9 Family 1 250 250 240.1 2.4e-71 1 CL0060
Cotton_A_06825_CDS 85 181 83 182 PF00153.27 Mito_carr Family 4 96 97 82.7 1.3e-23 1 No_clan
Cotton_A_06825_CDS 188 284 187 286 PF00153.27 Mito_carr Family 2 95 97 85.0 2.5e-24 1 No_clan
Cotton_A_06825_CDS 289 374 287 380 PF00153.27 Mito_carr Family 3 91 97 57.9 7.1e-16 1 No_clan
Cotton_A_10260_CDS 26 85 24 86 PF02874.23 ATP-synt_ab_N Domain 3 68 69 51.4 1.1e-13 1 CL0275
Cotton_A_10260_CDS 102 223 102 223 PF16886.5 ATP-synt_ab_Xtn Family 1 121 121 137.8 1.5e-40 1 No_clan
Cotton_A_10260_CDS 232 458 232 458 PF00006.25 ATP-synt_ab Domain 1 213 213 356.6 4.2e-107 1 CL0023
Cotton_A_26782_CDS 42 85 42 87 PF00249.31 Myb_DNA-binding Domain 1 44 46 52.7 3.4e-14 1 CL0123
Cotton_A_12949_CDS 54 111 44 147 PF14226.6 DIOX_N Family 19 75 118 41.8 1.6e-10 1 CL0029
Cotton_A_12949_CDS 200 292 194 292 PF03171.20 2OG-FeII_Oxy Domain 7 101 101 78.0 6e-22 1 CL0029
Cotton_A_18239_CDS 80 115 79 117 PF01096.18 TFIIS_C Domain 2 37 39 50.2 1.6e-13 1 CL0167
Cotton_A_28365_CDS 71 286 66 290 PF13489.6 Methyltransf_23 Domain 5 160 165 42.1 7.7e-11 1 CL0063
Cotton_A_18038_CDS 83 154 81 154 PF00364.22 Biotin_lipoyl Domain 3 73 73 60.5 1.1e-16 1 CL0105
Cotton_A_18038_CDS 187 222 187 222 PF02817.17 E3_binding Family 1 36 36 58.9 4.4e-16 1 No_clan
Cotton_A_18038_CDS 266 495 264 495 PF00198.23 2-oxoacid_dh Domain 3 233 233 259.4 2.7e-77 1 CL0149
Cotton_A_31578_CDS 9 149 7 151 PF00892.20 EamA Family 3 135 137 44.3 1.8e-11 1 CL0184
Cotton_A_31578_CDS 184 323 183 324 PF00892.20 EamA Family 2 136 137 40.5 2.8e-10 1 CL0184
Cotton_A_06482_CDS 20 109 12 111 PF00004.29 AAA Domain 54 130 132 67.7 1.3e-18 1 CL0023
Cotton_A_17354_CDS 10 57 10 57 PF00319.18 SRF-TF Domain 1 48 48 79.7 8e-23 1 No_clan
Cotton_A_17354_CDS 82 135 72 164 PF01486.17 K-box Family 6 59 93 49.7 3.2e-13 1 No_clan
Cotton_A_07174_CDS 33 159 31 159 PF02812.18 ELFV_dehydrog_N Domain 3 130 130 165.9 3.6e-49 1 CL0603
Cotton_A_07174_CDS 176 408 176 408 PF00208.21 ELFV_dehydrog Domain 1 243 243 245.8 4.9e-73 1 CL0063
Cotton_A_06860_CDS 23 160 12 162 PF06708.11 DUF1195 Family 8 145 147 207.6 6.8e-62 1 No_clan
Cotton_A_17827_CDS 223 484 222 487 PF00069.25 Pkinase Domain 2 259 264 137.5 5.1e-40 1 CL0016
Cotton_A_09775_CDS 5 56 5 57 PF00249.31 Myb_DNA-binding Domain 1 45 46 34.9 1.2e-08 1 CL0123
Cotton_A_09775_CDS 123 180 120 183 PF00538.19 Linker_histone Domain 5 64 74 35.6 9e-09 1 CL0123
Cotton_A_35072_CDS 125 325 88 325 PF01409.20 tRNA-synt_2d Domain 43 245 245 162.2 1.5e-47 1 CL0040
Cotton_A_35072_CDS 338 428 338 428 PF03147.14 FDX-ACB Domain 1 94 94 87.4 6.4e-25 1 No_clan
Cotton_A_39183_CDS 33 70 31 71 PF08263.12 LRRNT_2 Family 3 40 41 42.0 8.6e-11 1 No_clan
Cotton_A_39183_CDS 100 159 99 159 PF13855.6 LRR_8 Repeat 2 61 61 34.6 1.2e-08 1 CL0022
Cotton_A_39183_CDS 172 231 171 231 PF13855.6 LRR_8 Repeat 2 61 61 34.0 1.8e-08 1 CL0022
Cotton_A_39183_CDS 714 937 712 961 PF07714.17 Pkinase_Tyr Domain 3 212 259 136.3 1.1e-39 1 CL0016
Cotton_A_36640_CDS 31 151 30 151 PF02788.16 RuBisCO_large_N Domain 2 120 120 152.3 6.1e-45 1 No_clan
Cotton_A_36640_CDS 161 469 161 469 PF00016.20 RuBisCO_large Domain 1 299 299 420.4 3.5e-126 1 No_clan
Cotton_A_36640_CDS 796 925 778 929 PF01039.22 Carboxyl_trans Family 16 146 494 56.5 1.9e-15 1 CL0127
Cotton_A_38226_CDS 6 45 6 46 PF08263.12 LRRNT_2 Family 1 40 41 38.9 8e-10 1 No_clan
Cotton_A_38226_CDS 147 207 147 207 PF13855.6 LRR_8 Repeat 2 61 61 37.7 1.3e-09 1 CL0022
Cotton_A_22179_CDS 2 114 1 115 PF03492.15 Methyltransf_7 Family 216 333 334 90.8 9.2e-26 1 CL0063
Cotton_A_17555_CDS 2 112 1 112 PF01984.20 dsDNA_bind Family 7 111 111 101.4 3.2e-29 1 No_clan
Cotton_A_19275_CDS 1 143 1 143 PF14009.6 DUF4228 Family 1 179 179 56.1 5.9e-15 1 No_clan
Cotton_A_26326_CDS 38 76 37 76 PF08263.12 LRRNT_2 Family 2 41 41 48.4 8.3e-13 1 No_clan
Cotton_A_26326_CDS 121 135 119 137 PF13516.6 LRR_6 Repeat 3 17 24 13.6 0.054 1 CL0022
Cotton_A_26326_CDS 317 332 316 334 PF13516.6 LRR_6 Repeat 2 17 24 10.1 0.71 1 CL0022
Cotton_A_29280_CDS 85 167 85 169 PF00118.24 Cpn60_TCP1 Family 1 79 491 71.2 6.6e-20 1 No_clan
Cotton_A_29280_CDS 169 261 164 268 PF00118.24 Cpn60_TCP1 Family 118 216 491 41.3 7.5e-11 1 No_clan
Cotton_A_22974_CDS 35 110 35 110 PF05922.16 Inhibitor_I9 Domain 1 82 82 53.3 3.4e-14 1 CL0570
Cotton_A_22974_CDS 131 583 130 612 PF00082.22 Peptidase_S8 Domain 2 298 298 162.1 1.7e-47 1 No_clan
Cotton_A_22974_CDS 638 735 638 735 PF17766.1 fn3_6 Domain 1 99 99 90.3 7.2e-26 1 CL0159
Cotton_A_21266_CDS 45 163 36 164 PF03492.15 Methyltransf_7 Family 9 126 334 163.6 6.8e-48 1 CL0063
Cotton_A_20358_CDS 118 452 118 456 PF00310.21 GATase_2 Domain 1 335 420 430.0 7.9e-129 1 CL0052
Cotton_A_20358_CDS 475 560 471 560 PF00310.21 GATase_2 Domain 335 420 420 115.5 2.3e-33 1 CL0052
Cotton_A_20358_CDS 610 682 608 682 PF04898.14 Glu_syn_central Domain 3 75 279 113.3 1.5e-32 1 CL0036
Cotton_A_10576_CDS 2 383 2 384 PF00657.22 Lipase_GDSL Family 1 199 200 48.9 7.7e-13 1 CL0264
Cotton_A_06445_CDS 1 58 1 61 PF02823.16 ATP-synt_DE_N Domain 17 75 80 48.9 4.5e-13 1 No_clan
Cotton_A_13100_CDS 44 76 42 81 PF00400.32 WD40 Repeat 3 32 38 13.8 0.084 1 CL0186
Cotton_A_13100_CDS 90 123 88 123 PF00400.32 WD40 Repeat 6 38 38 34.9 1.8e-08 1 CL0186
Cotton_A_13100_CDS 127 164 126 164 PF00400.32 WD40 Repeat 2 38 38 20.5 0.00063 1 CL0186
Cotton_A_13100_CDS 168 206 168 206 PF00400.32 WD40 Repeat 1 38 38 35.3 1.4e-08 1 CL0186
Cotton_A_13100_CDS 213 249 210 251 PF00400.32 WD40 Repeat 4 36 38 21.5 0.00031 1 CL0186
Cotton_A_13100_CDS 270 300 261 300 PF00400.32 WD40 Repeat 9 38 38 19.9 0.00095 1 CL0186
Cotton_A_13100_CDS 310 362 296 366 PF12894.7 ANAPC4_WD40 Repeat 35 88 92 25.0 1.7e-05 1 CL0186
Cotton_A_16522_CDS 32 115 28 116 PF00153.27 Mito_carr Family 10 96 97 49.7 2.6e-13 1 No_clan
Cotton_A_16522_CDS 130 207 127 210 PF00153.27 Mito_carr Family 7 85 97 50.4 1.6e-13 1 No_clan
Cotton_A_34241_CDS 112 234 111 235 PF00572.18 Ribosomal_L13 Family 2 124 125 172.7 3.3e-51 1 No_clan
Cotton_A_00926_CDS 51 109 51 125 PF05617.11 Prolamin_like Domain 1 58 71 52.1 5.6e-14 1 CL0482
Cotton_A_00926_CDS 141 200 141 201 PF05617.11 Prolamin_like Domain 1 70 71 53.4 2.1e-14 1 CL0482
Cotton_A_09154_CDS 1 100 1 100 PF01373.17 Glyco_hydro_14 Domain 307 402 402 107.7 6.3e-31 1 CL0058
Cotton_A_00606_CDS 13 96 5 96 PF02519.14 Auxin_inducible Family 2 90 90 79.1 2e-22 1 No_clan
Cotton_A_28251_CDS 7 285 6 286 PF01875.17 Memo Family 2 270 271 275.9 2.9e-82 1 CL0283
Cotton_A_36847_CDS 13 68 3 73 PF14327.6 CSTF2_hinge Family 20 75 81 62.6 3.6e-17 1 No_clan
Cotton_A_36847_CDS 360 394 356 394 PF14304.6 CSTF_C Domain 6 40 41 37.8 1.1e-09 1 No_clan
Cotton_A_26960_CDS 2 158 2 178 PF03446.15 NAD_binding_2 Domain 1 154 158 141.1 3.2e-41 1 CL0063
Cotton_A_26960_CDS 164 282 164 284 PF14833.6 NAD_binding_11 Domain 1 120 122 87.0 1.1e-24 1 CL0106
Cotton_A_15003_CDS 45 286 45 286 PF07250.11 Glyoxal_oxid_N Family 1 240 240 375.3 9.6e-113 1 No_clan
Cotton_A_15003_CDS 442 546 442 546 PF09118.11 DUF1929 Domain 1 96 96 92.7 1.3e-26 1 CL0159
Cotton_A_21388_CDS 7 97 7 98 PF13850.6 ERGIC_N Domain 1 90 91 82.6 1.9e-23 1 No_clan
Cotton_A_21388_CDS 158 243 143 260 PF00085.20 Thioredoxin Domain 18 95 103 51.5 7.6e-14 1 CL0172
Cotton_A_21388_CDS 285 461 270 461 PF07970.12 COPIIcoated_ERV Family 48 221 221 105.0 5.1e-30 1 No_clan
Cotton_A_25006_CDS 65 209 64 210 PF00582.26 Usp Domain 3 140 141 83.5 2e-23 1 CL0039
Cotton_A_13096_CDS 52 289 38 291 PF00141.23 peroxidase Domain 11 227 229 221.9 8.7e-66 1 CL0617
Cotton_A_32446_CDS 13 55 11 55 PF04578.13 DUF594 Family 3 45 55 53.0 1.8e-14 1 No_clan
Cotton_A_10820_CDS 75 129 75 129 PF12838.7 Fer4_7 Domain 1 52 52 52.3 6.2e-14 1 CL0344
Cotton_A_04810_CDS 6 66 1 66 PF01066.21 CDP-OH_P_transf Family 16 66 66 48.8 8.7e-13 1 No_clan
Cotton_A_27203_CDS 114 297 113 297 PF11721.8 Malectin Domain 2 165 165 143.1 8.4e-42 1 CL0202
Cotton_A_17277_CDS 1 47 1 61 PF18052.1 Rx_N Domain 37 83 93 39.6 4.6e-10 1 No_clan
Cotton_A_17277_CDS 132 303 128 308 PF00931.22 NB-ARC Domain 5 179 252 156.6 6.5e-46 1 CL0023
Cotton_A_30465_CDS 35 76 34 79 PF00046.29 Homeodomain Domain 2 43 57 26.5 4.2e-06 1 CL0123
Cotton_A_09565_CDS 6 98 1 98 PF10536.9 PMD Domain 97 182 363 53.2 2.4e-14 1 No_clan
Cotton_A_18643_CDS 64 344 44 347 PF00150.18 Cellulase Domain 22 277 281 91.0 8.3e-26 1 CL0058
Cotton_A_18643_CDS 406 510 399 513 PF00652.22 Ricin_B_lectin Domain 10 123 127 35.1 1.3e-08 1 CL0066
Cotton_A_19208_CDS 157 213 156 214 PF03106.15 WRKY Domain 2 58 59 84.7 3.8e-24 1 CL0274
Cotton_A_26841_CDS 8 279 8 283 PF00069.25 Pkinase Domain 1 258 264 174.1 3.6e-51 1 CL0016
Cotton_A_10623_CDS 40 160 38 161 PF00241.20 Cofilin_ADF Domain 3 120 121 121.0 2.3e-35 1 CL0092
Cotton_A_32480_CDS 145 170 145 171 PF13912.6 zf-C2H2_6 Domain 1 26 27 48.1 7.4e-13 1 CL0361
Cotton_A_32480_CDS 255 280 255 281 PF13912.6 zf-C2H2_6 Domain 1 26 27 43.4 2.3e-11 1 CL0361
Cotton_A_03076_CDS 21 83 21 85 PF01918.21 Alba Family 1 64 67 50.5 1.4e-13 1 CL0441
Cotton_A_21406_CDS 76 254 69 255 PF00573.22 Ribosomal_L4 Family 12 191 192 179.6 5.2e-53 1 No_clan
Cotton_A_10672_CDS 108 315 107 315 PF02190.16 LON_substr_bdg Family 2 208 208 125.8 2.1e-36 1 CL0178
Cotton_A_10672_CDS 468 605 468 610 PF00004.29 AAA Domain 1 127 132 76.1 3.4e-21 1 CL0023
Cotton_A_10672_CDS 777 981 776 983 PF05362.13 Lon_C Domain 2 203 205 241.7 5.1e-72 1 CL0329
Cotton_A_04566_CDS 12 381 9 382 PF01702.18 TGT Family 2 345 350 316.5 2.1e-94 1 No_clan
Cotton_A_13218_CDS 27 345 26 345 PF03690.13 UPF0160 Family 2 317 317 456.0 8.8e-137 1 No_clan
Cotton_A_24256_CDS 29 296 27 296 PF05910.12 DUF868 Family 3 279 279 347.5 6.5e-104 1 No_clan
Cotton_A_32714_CDS 45 327 42 327 PF00069.25 Pkinase Domain 5 264 264 231.1 1.4e-68 1 CL0016
Cotton_A_16445_CDS 34 98 34 98 PF05922.16 Inhibitor_I9 Domain 1 71 82 44.2 2.3e-11 1 CL0570
Cotton_A_21624_CDS 65 134 65 134 PF00076.22 RRM_1 Domain 1 69 70 82.9 1e-23 1 CL0221
Cotton_A_11532_CDS 255 301 255 301 PF00249.31 Myb_DNA-binding Domain 1 46 46 57.3 1.3e-15 1 CL0123
Cotton_A_15561_CDS 84 151 84 153 PF00076.22 RRM_1 Domain 1 67 70 47.9 8.4e-13 1 CL0221
Cotton_A_15561_CDS 177 245 177 248 PF00076.22 RRM_1 Domain 1 67 70 51.4 7.1e-14 1 CL0221
Cotton_A_15561_CDS 285 349 285 349 PF00076.22 RRM_1 Domain 1 70 70 68.0 4.6e-19 1 CL0221
Cotton_A_11020_CDS 61 337 58 339 PF07714.17 Pkinase_Tyr Domain 4 257 259 168.9 1.3e-49 1 CL0016
Cotton_A_09448_CDS 149 333 134 334 PF12146.8 Hydrolase_4 Family 72 235 239 29.5 4.2e-07 1 CL0028
Cotton_A_09448_CDS 471 547 468 569 PF03982.13 DAGAT Family 116 195 297 25.3 6.3e-06 1 CL0228
Cotton_A_19327_CDS 182 213 176 214 PF00400.32 WD40 Repeat 7 37 38 18.1 0.0036 1 CL0186
Cotton_A_19327_CDS 220 256 218 256 PF00400.32 WD40 Repeat 3 38 38 14.8 0.041 1 CL0186
Cotton_A_19327_CDS 267 301 264 302 PF00400.32 WD40 Repeat 4 37 38 21.3 0.00035 1 CL0186
Cotton_A_19327_CDS 317 349 314 350 PF00400.32 WD40 Repeat 4 37 38 20.4 0.00066 1 CL0186
Cotton_A_19327_CDS 358 409 357 410 PF00400.32 WD40 Repeat 2 37 38 12.6 0.19 1 CL0186
Cotton_A_22896_CDS 28 251 26 258 PF00139.19 Lectin_legB Domain 3 236 249 200.4 3.3e-59 1 CL0004
Cotton_A_22896_CDS 329 598 326 602 PF00069.25 Pkinase Domain 4 258 264 175.1 1.7e-51 1 CL0016
Cotton_A_13719_CDS 67 169 41 173 PF03018.14 Dirigent Family 40 144 148 68.9 3.9e-19 1 CL0650
Cotton_A_31444_CDS 7 56 3 57 PF13774.6 Longin Domain 32 83 84 40.3 2.4e-10 1 No_clan
Cotton_A_31444_CDS 74 159 72 160 PF00957.21 Synaptobrevin Family 3 88 89 118.2 9.7e-35 1 CL0445
Cotton_A_14919_CDS 3 146 1 149 PF00407.19 Bet_v_1 Domain 5 145 151 43.9 2.2e-11 1 CL0209
Cotton_A_07534_CDS 115 281 115 281 PF05991.11 NYN_YacP Domain 1 166 166 148.2 2e-43 1 CL0280
Cotton_A_17558_CDS 64 230 64 231 PF00504.21 Chloroa_b-bind Family 1 160 161 173.8 3.7e-51 1 No_clan
Cotton_A_01898_CDS 23 249 21 251 PF00194.21 Carb_anhydrase Domain 3 252 254 153.0 1e-44 1 No_clan
Cotton_A_23285_CDS 4 97 4 97 PF01190.17 Pollen_Ole_e_I Family 1 99 99 66.2 2.6e-18 1 CL0287
Cotton_A_30265_CDS 1 173 1 176 PF05291.11 Bystin Family 61 249 292 267.4 1.5e-79 1 No_clan
Cotton_A_27966_CDS 55 163 55 169 PF14226.6 DIOX_N Family 1 116 118 82.5 3.9e-23 1 CL0029
Cotton_A_27966_CDS 209 312 206 313 PF03171.20 2OG-FeII_Oxy Domain 4 100 101 88.1 4.4e-25 1 CL0029
Cotton_A_24443_CDS 142 174 142 175 PF13181.6 TPR_8 Repeat 1 33 34 14.8 0.025 1 CL0020
Cotton_A_24443_CDS 176 208 176 209 PF00515.28 TPR_1 Repeat 1 33 34 36.7 2.2e-09 1 CL0020
Cotton_A_24443_CDS 223 275 222 276 PF13432.6 TPR_16 Family 10 65 68 20.2 0.00068 1 CL0020
Cotton_A_24443_CDS 279 311 278 311 PF00515.28 TPR_1 Repeat 2 34 34 41.2 8.6e-11 1 CL0020
Cotton_A_24443_CDS 314 342 314 347 PF13176.6 TPR_7 Repeat 1 29 36 15.1 0.018 1 CL0020
Cotton_A_24443_CDS 347 379 346 379 PF00515.28 TPR_1 Repeat 2 34 34 35.4 5.9e-09 1 CL0020
Cotton_A_24443_CDS 423 462 422 462 PF13414.6 TPR_11 Repeat 3 42 42 37.6 1.2e-09 1 CL0020
Cotton_A_24443_CDS 490 522 489 522 PF13414.6 TPR_11 Repeat 2 34 42 28.0 1.3e-06 1 CL0020
Cotton_A_24443_CDS 632 782 629 790 PF13844.6 Glyco_transf_41 Family 4 155 471 232.3 7.7e-69 1 CL0113
Cotton_A_24443_CDS 795 989 787 989 PF13844.6 Glyco_transf_41 Family 278 471 471 247.7 1.7e-73 1 CL0113
Cotton_A_30787_CDS 6 87 5 101 PF18052.1 Rx_N Domain 2 84 93 65.9 3e-18 1 No_clan
Cotton_A_31082_CDS 5 262 3 262 PF00069.25 Pkinase Domain 3 264 264 183.2 5.8e-54 1 CL0016
Cotton_A_37987_CDS 19 197 18 205 PF00106.25 adh_short Domain 2 179 195 175.2 1e-51 1 CL0063
Cotton_A_00348_CDS 44 82 43 83 PF08263.12 LRRNT_2 Family 2 40 41 46.4 3.5e-12 1 No_clan
Cotton_A_00348_CDS 136 158 136 158 PF00560.33 LRR_1 Repeat 1 23 23 12.8 0.14 1 CL0022
Cotton_A_09312_CDS 104 171 101 171 PF00690.26 Cation_ATPase_N Domain 4 69 69 52.1 3.9e-14 1 No_clan
Cotton_A_09312_CDS 222 425 219 427 PF00122.20 E1-E2_ATPase Family 4 179 181 135.7 1.2e-39 1 No_clan
Cotton_A_09312_CDS 444 761 443 761 PF00702.26 Hydrolase Domain 2 210 210 64.9 1.2e-17 1 CL0137
Cotton_A_09312_CDS 832 1002 831 1002 PF00689.21 Cation_ATPase_C Family 2 182 182 162.4 8.8e-48 1 No_clan
Cotton_A_18558_CDS 325 478 324 478 PF14309.6 DUF4378 Family 2 165 165 95.8 3.5e-27 1 No_clan
Cotton_A_05509_CDS 1 29 1 29 PF13405.6 EF-hand_6 Domain 2 31 31 24.4 1.6e-05 1 CL0220
Cotton_A_05509_CDS 69 132 69 133 PF13499.6 EF-hand_7 Domain 1 70 71 43.9 2.4e-11 1 CL0220
Cotton_A_22591_CDS 39 359 38 359 PF16913.5 PUNUT Family 2 322 322 372.1 2.4e-111 1 CL0184
Cotton_A_09492_CDS 29 340 28 341 PF00657.22 Lipase_GDSL Family 2 199 200 67.5 1.5e-18 1 CL0264
Cotton_A_26248_CDS 61 350 58 373 PF00150.18 Cellulase Domain 4 251 281 44.6 1.2e-11 1 CL0058
Cotton_A_21237_CDS 129 158 128 158 PF01535.20 PPR Family 2 31 31 20.5 0.00038 1 CL0020
Cotton_A_21237_CDS 165 209 163 210 PF13041.6 PPR_2 Repeat 6 49 50 47.3 1.7e-12 1 CL0020
Cotton_A_21237_CDS 231 277 231 279 PF13041.6 PPR_2 Repeat 1 46 50 32.6 6.9e-08 1 CL0020
Cotton_A_21237_CDS 306 333 305 335 PF01535.20 PPR Family 2 29 31 19.8 0.00062 1 CL0020
Cotton_A_21237_CDS 339 386 338 386 PF13041.6 PPR_2 Repeat 3 50 50 33.9 2.6e-08 1 CL0020
Cotton_A_21237_CDS 408 455 407 456 PF13041.6 PPR_2 Repeat 2 49 50 45.7 5.7e-12 1 CL0020
Cotton_A_08337_CDS 3 182 2 182 PF00227.26 Proteasome Domain 6 190 190 136.3 8.4e-40 1 CL0052
Cotton_A_24681_CDS 106 149 105 153 PF00847.20 AP2 Domain 2 50 54 23.5 4.8e-05 1 CL0081
Cotton_A_07468_CDS 181 209 179 209 PF00397.26 WW Domain 3 31 31 33.2 4.1e-08 1 CL0680
Cotton_A_07468_CDS 745 775 745 775 PF00397.26 WW Domain 1 31 31 36.8 3e-09 1 CL0680
Cotton_A_03060_CDS 11 165 2 167 PF03016.15 Exostosin Family 135 298 300 133.6 8.4e-39 1 No_clan
Cotton_A_20231_CDS 110 308 109 308 PF03407.16 Nucleotid_trans Family 2 212 212 219.5 4.7e-65 1 CL0110
Cotton_A_32926_CDS 35 195 35 197 PF00071.22 Ras Domain 1 160 162 193.1 2.4e-57 1 CL0023
Cotton_A_32487_CDS 71 209 69 209 PF00080.20 Sod_Cu Domain 4 142 142 160.0 4e-47 1 No_clan
Cotton_A_32464_CDS 50 100 45 100 PF10839.8 DUF2647 Family 12 70 70 41.4 1.1e-10 1 No_clan
Cotton_A_23980_CDS 223 334 215 349 PF06414.12 Zeta_toxin Domain 11 116 199 60.3 1.5e-16 1 CL0023
Cotton_A_40151_CDS 251 421 250 458 PF02854.19 MIF4G Family 2 188 212 39.2 5.8e-10 1 CL0020
Cotton_A_06126_CDS 52 182 50 182 PF16863.5 NtCtMGAM_N Domain 3 116 116 114.7 2.5e-33 1 CL0103
Cotton_A_06126_CDS 185 252 184 255 PF13802.6 Gal_mutarotas_2 Domain 2 62 66 28.1 1.9e-06 1 CL0103
Cotton_A_06126_CDS 274 764 274 764 PF01055.26 Glyco_hydro_31 Family 1 440 440 502.5 1.2e-150 1 CL0058
Cotton_A_21438_CDS 153 311 152 315 PF01734.22 Patatin Family 2 199 204 41.0 2.4e-10 1 CL0323
Cotton_A_25531_CDS 5 73 5 74 PF00194.21 Carb_anhydrase Domain 1 68 254 40.1 2.9e-10 1 No_clan
Cotton_A_06096_CDS 8 137 1 141 PF01266.24 DAO Domain 215 349 352 51.3 1.3e-13 1 CL0063
Cotton_A_06096_CDS 162 227 162 230 PF16901.5 DAO_C Family 1 52 126 39.2 5.3e-10 1 No_clan
Cotton_A_30190_CDS 229 450 228 472 PF01697.27 Glyco_transf_92 Domain 2 228 260 111.7 4.7e-32 1 CL0110
Cotton_A_19682_CDS 76 485 76 507 PF13520.6 AA_permease_2 Family 1 410 425 160.9 4.4e-47 1 CL0062
Cotton_A_19682_CDS 516 566 516 566 PF13906.6 AA_permease_C Domain 1 51 51 63.6 1.3e-17 1 CL0062
Cotton_A_10322_CDS 237 830 234 830 PF05183.12 RdRP Family 6 586 586 341.6 8.8e-102 1 No_clan
Cotton_A_10322_CDS 1061 1241 1061 1242 PF00390.19 malic Domain 1 181 182 260.6 7.1e-78 1 CL0603
Cotton_A_10322_CDS 1252 1505 1252 1505 PF03949.15 Malic_M Domain 1 258 258 319.0 2e-95 1 CL0063
Cotton_A_11112_CDS 116 193 116 193 PF02362.21 B3 Family 1 65 101 49.4 3.1e-13 1 CL0405
Cotton_A_20793_CDS 13 68 3 68 PF01397.21 Terpene_synth Domain 133 192 192 45.4 7.1e-12 1 No_clan
Cotton_A_20793_CDS 100 366 100 366 PF03936.16 Terpene_synth_C Domain 1 267 267 305.7 2.6e-91 1 CL0613
Cotton_A_25381_CDS 4 99 1 106 PF00365.20 PFK Domain 58 158 284 57.8 1.1e-15 1 CL0240
Cotton_A_07925_CDS 30 129 29 130 PF14523.6 Syntaxin_2 Domain 2 100 101 103.8 5.1e-30 1 CL0445
Cotton_A_07925_CDS 213 265 213 265 PF05739.19 SNARE Family 1 53 53 53.9 1.3e-14 1 No_clan
Cotton_A_21591_CDS 34 341 32 342 PF00294.24 PfkB Family 3 301 302 270.7 1.5e-80 1 CL0118
Cotton_A_02502_CDS 33 146 32 147 PF07732.15 Cu-oxidase_3 Domain 2 117 119 127.2 3e-37 1 CL0026
Cotton_A_02502_CDS 158 300 158 301 PF00394.22 Cu-oxidase Domain 1 158 159 126.3 1.1e-36 1 CL0026
Cotton_A_02502_CDS 397 520 380 523 PF07731.14 Cu-oxidase_2 Domain 18 134 137 82.6 2e-23 1 CL0026
Cotton_A_10314_CDS 70 324 69 324 PF00069.25 Pkinase Domain 2 264 264 193.0 6.1e-57 1 CL0016
Cotton_A_03107_CDS 107 207 106 211 PF04367.13 DUF502 Family 2 102 106 101.1 2.9e-29 1 No_clan
Cotton_A_07129_CDS 9 111 6 113 PF00635.26 Motile_Sperm Domain 4 107 109 108.9 1.1e-31 1 CL0556
Cotton_A_06301_CDS 43 88 43 88 PF13445.6 zf-RING_UBOX Domain 1 39 39 34.0 2.2e-08 1 CL0229
Cotton_A_36103_CDS 125 172 121 172 PF08729.10 HUN Domain 5 52 52 46.7 2.3e-12 1 No_clan
Cotton_A_28160_CDS 40 92 40 93 PF13833.6 EF-hand_8 Domain 1 54 55 47.3 1.3e-12 1 CL0220
Cotton_A_08657_CDS 73 430 73 430 PF09766.9 FmiP_Thoc5 Family 1 364 364 369.5 2e-110 1 No_clan
Cotton_A_19990_CDS 38 87 37 88 PF00847.20 AP2 Domain 2 53 54 48.0 1.1e-12 1 CL0081
Cotton_A_29744_CDS 189 279 188 279 PF07540.11 NOC3p Family 2 94 94 101.1 3.5e-29 1 No_clan
Cotton_A_29744_CDS 555 708 552 708 PF03914.17 CBF Family 4 170 170 78.5 5.9e-22 1 No_clan
Cotton_A_29752_CDS 373 412 373 413 PF06203.14 CCT Motif 1 40 44 48.2 8.2e-13 1 CL0281
Cotton_A_37076_CDS 10 57 10 57 PF00319.18 SRF-TF Domain 1 48 48 90.8 2.8e-26 1 No_clan
Cotton_A_13521_CDS 278 438 265 450 PF00201.18 UDPGT Family 261 409 499 74.7 6.3e-21 1 CL0113
Cotton_A_07008_CDS 24 341 24 341 PF12819.7 Malectin_like Domain 1 336 336 252.0 8.4e-75 1 CL0202
Cotton_A_07008_CDS 416 453 416 465 PF12799.7 LRR_4 Repeat 1 40 44 28.2 1.8e-06 1 CL0022
Cotton_A_02814_CDS 17 307 16 321 PF14647.6 FAM91_N Family 2 294 310 311.4 6.5e-93 1 No_clan
Cotton_A_02814_CDS 366 444 364 463 PF14648.6 FAM91_C Family 3 81 431 70.6 1.1e-19 1 No_clan
Cotton_A_02814_CDS 564 784 541 791 PF14648.6 FAM91_C Family 90 292 431 115.5 2.6e-33 1 No_clan
Cotton_A_02814_CDS 793 883 777 885 PF14648.6 FAM91_C Family 330 419 431 46.0 3.3e-12 1 No_clan
Cotton_A_00682_CDS 10 77 2 78 PF02519.14 Auxin_inducible Family 22 89 90 87.7 4.3e-25 1 No_clan
Cotton_A_26789_CDS 36 86 35 86 PF08100.11 Dimerisation Domain 2 51 51 63.5 1.3e-17 1 CL0123
Cotton_A_24828_CDS 1 186 1 186 PF06045.11 Rhamnogal_lyase Family 32 213 213 286.7 8.9e-86 1 CL0103
Cotton_A_24828_CDS 341 403 336 404 PF14686.6 fn3_3 Domain 3 74 75 71.2 4.6e-20 1 CL0287
Cotton_A_24828_CDS 417 530 417 541 PF14683.6 CBM-like Domain 1 96 165 105.4 2.7e-30 1 CL0202
Cotton_A_28616_CDS 14 91 12 91 PF10163.9 EnY2 Family 6 84 84 104.9 2.1e-30 1 No_clan
Cotton_A_23920_CDS 4 99 3 141 PF02365.15 NAM Family 2 95 126 46.5 6.6e-12 1 No_clan
Cotton_A_27953_CDS 15 317 13 318 PF08449.11 UAA Family 3 301 302 282.5 3.6e-84 1 CL0184
Cotton_A_28150_CDS 73 183 72 185 PF00635.26 Motile_Sperm Domain 2 107 109 95.0 2.2e-27 1 CL0556
Cotton_A_31416_CDS 11 154 9 160 PF00582.26 Usp Domain 3 134 141 43.2 5.2e-11 1 CL0039
Cotton_A_31416_CDS 468 724 466 728 PF00069.25 Pkinase Domain 3 258 264 138.4 2.7e-40 1 CL0016
Cotton_A_31885_CDS 1 295 1 296 PF00676.20 E1_dh Family 3 299 300 395.5 1.1e-118 1 CL0254
Cotton_A_17110_CDS 163 256 163 269 PF13460.6 NAD_binding_10 Domain 1 87 184 49.4 4.8e-13 1 CL0063
Cotton_A_17110_CDS 305 406 278 431 PF08547.12 CIA30 Family 21 125 160 34.6 1.8e-08 1 CL0202
Cotton_A_17110_CDS 463 544 435 545 PF13460.6 NAD_binding_10 Domain 93 183 184 47.3 2.1e-12 1 CL0063
Cotton_A_27479_CDS 48 126 47 129 PF01541.24 GIY-YIG Domain 2 75 78 54.6 9.6e-15 1 CL0418
Cotton_A_08029_CDS 27 112 27 112 PF04433.17 SWIRM Domain 1 89 89 95.2 2.2e-27 1 CL0123
Cotton_A_08029_CDS 244 283 243 286 PF00249.31 Myb_DNA-binding Domain 3 42 46 34.4 1.8e-08 1 CL0123
Cotton_A_08029_CDS 466 539 465 546 PF16495.5 SWIRM-assoc_1 Family 2 75 84 60.0 1.6e-16 1 No_clan
Cotton_A_03259_CDS 36 313 34 313 PF05910.12 DUF868 Family 3 279 279 345.9 1.9e-103 1 No_clan
Cotton_A_33493_CDS 4 435 3 436 PF02458.15 Transferase Family 2 433 434 286.0 4.1e-85 1 CL0149
Cotton_A_02679_CDS 5 56 5 57 PF00249.31 Myb_DNA-binding Domain 1 45 46 37.4 2.2e-09 1 CL0123
Cotton_A_02679_CDS 118 177 117 182 PF00538.19 Linker_histone Domain 2 63 74 42.8 5e-11 1 CL0123
Cotton_A_19511_CDS 18 89 18 96 PF00300.22 His_Phos_1 Domain 1 61 194 28.4 1.1e-06 1 CL0071
Cotton_A_19511_CDS 152 241 135 245 PF00300.22 His_Phos_1 Domain 102 188 194 21.9 0.00011 1 CL0071
Cotton_A_25655_CDS 296 412 295 412 PF00615.19 RGS Domain 2 118 118 49.4 4.8e-13 1 CL0272
Cotton_A_22294_CDS 27 169 26 169 PF00056.23 Ldh_1_N Family 2 141 141 164.7 1.2e-48 1 CL0063
Cotton_A_22294_CDS 171 334 171 335 PF02866.18 Ldh_1_C Domain 1 166 167 170.1 3.8e-50 1 CL0341
Cotton_A_07414_CDS 24 212 20 212 PF02115.17 Rho_GDI Domain 3 195 195 243.9 1.1e-72 1 CL0159
Cotton_A_37544_CDS 7 129 7 130 PF00241.20 Cofilin_ADF Domain 1 120 121 129.3 6.2e-38 1 CL0092
Cotton_A_15240_CDS 59 611 59 615 PF02990.16 EMP70 Family 1 515 519 603.3 3.8e-181 1 No_clan
Cotton_A_08372_CDS 79 130 79 135 PF01918.21 Alba Family 1 53 67 46.2 3e-12 1 CL0441
Cotton_A_15388_CDS 179 330 179 330 PF00005.27 ABC_tran Domain 1 137 137 97.3 1e-27 1 CL0023
Cotton_A_28637_CDS 7 104 7 106 PF03195.14 LOB Family 1 97 99 125.7 8.3e-37 1 No_clan
Cotton_A_03063_CDS 25 369 15 379 PF12231.8 Rif1_N Family 12 359 374 123.6 9.5e-36 1 No_clan
Cotton_A_14350_CDS 100 588 100 596 PF03141.16 Methyltransf_29 Family 1 490 506 713.1 1.7e-214 1 CL0063
Cotton_A_02989_CDS 10 86 2 86 PF02136.20 NTF2 Domain 38 120 120 63.7 2.3e-17 1 CL0051
Cotton_A_02989_CDS 279 347 279 349 PF00076.22 RRM_1 Domain 1 68 70 33.0 4e-08 1 CL0221
Cotton_A_20103_CDS 15 175 15 176 PF00071.22 Ras Domain 1 161 162 212.2 3.1e-63 1 CL0023
Cotton_A_04167_CDS 219 280 218 281 PF08574.10 Iwr1 Family 2 73 74 29.3 1.3e-06 1 No_clan
Cotton_A_14712_CDS 210 276 208 279 PF00364.22 Biotin_lipoyl Domain 3 67 73 79.1 1.6e-22 1 CL0105
Cotton_A_06772_CDS 3 269 1 272 PF03059.16 NAS Family 6 272 276 337.6 5.4e-101 1 CL0063
Cotton_A_28536_CDS 35 175 33 176 PF04043.15 PMEI Domain 3 153 154 87.1 1.5e-24 1 No_clan
Cotton_A_35906_CDS 73 270 72 270 PF01997.16 Translin Family 2 205 205 192.7 7.2e-57 1 No_clan
Cotton_A_19400_CDS 62 131 57 131 PF00111.27 Fer2 Domain 7 78 78 72.9 1.5e-20 1 CL0486
Cotton_A_02263_CDS 71 160 70 161 PF04576.15 Zein-binding Family 2 91 92 115.1 1.3e-33 1 No_clan
Cotton_A_03389_CDS 34 84 33 84 PF00847.20 AP2 Domain 2 54 54 54.9 7.4e-15 1 CL0081
Cotton_A_27782_CDS 43 119 43 137 PF00197.18 Kunitz_legume Domain 1 80 175 48.3 1.1e-12 1 CL0066
Cotton_A_08643_CDS 303 407 301 415 PF01501.20 Glyco_transf_8 Family 3 125 256 37.4 2e-09 1 CL0110
Cotton_A_17366_CDS 23 72 22 73 PF00847.20 AP2 Domain 2 53 54 48.8 6.1e-13 1 CL0081
Cotton_A_01567_CDS 18 53 17 80 PF13947.6 GUB_WAK_bind Domain 2 37 106 41.6 1.7e-10 1 No_clan
Cotton_A_23369_CDS 1 119 1 121 PF09187.10 RdDM_RDM1 Domain 12 116 119 110.5 5e-32 1 No_clan
Cotton_A_00614_CDS 2 35 1 35 PF02519.14 Auxin_inducible Family 57 90 90 39.8 3.7e-10 1 No_clan
Cotton_A_32671_CDS 4 85 2 86 PF00276.20 Ribosomal_L23 Family 3 84 86 68.0 6.8e-19 1 No_clan
Cotton_A_01484_CDS 39 136 16 166 PF00484.19 Pro_CA Domain 38 133 156 55.4 8.5e-15 1 No_clan
Cotton_A_32415_CDS 54 191 53 195 PF10607.9 CLTH Domain 2 143 148 105.7 2e-30 1 No_clan
Cotton_A_10582_CDS 32 184 30 184 PF04535.12 DUF588 Domain 5 150 150 134.6 2.3e-39 1 CL0396
Cotton_A_37509_CDS 1 107 1 111 PF03087.14 DUF241 Family 123 223 234 85.2 6.1e-24 1 CL0133
Cotton_A_29652_CDS 282 413 281 414 PF00004.29 AAA Domain 2 131 132 148.8 1.1e-43 1 CL0023
Cotton_A_29652_CDS 436 478 436 480 PF17862.1 AAA_lid_3 Domain 1 43 45 55.2 4.6e-15 1 CL0671
Cotton_A_29652_CDS 495 688 494 688 PF01434.18 Peptidase_M41 Domain 2 191 191 243.1 1.9e-72 1 CL0126
Cotton_A_34770_CDS 89 232 89 232 PF00056.23 Ldh_1_N Family 1 141 141 159.5 5.3e-47 1 CL0063
Cotton_A_34770_CDS 234 400 234 400 PF02866.18 Ldh_1_C Domain 1 167 167 158.6 1.3e-46 1 CL0341
Cotton_A_17208_CDS 18 251 17 259 PF00139.19 Lectin_legB Domain 2 239 249 226.7 3.1e-67 1 CL0004
Cotton_A_17208_CDS 331 597 330 601 PF00069.25 Pkinase Domain 2 260 264 171.1 2.9e-50 1 CL0016
Cotton_A_05988_CDS 61 83 61 83 PF02493.20 MORN Repeat 1 23 23 27.2 2.3e-06 1 CL0251
Cotton_A_05988_CDS 84 105 84 106 PF02493.20 MORN Repeat 1 22 23 20.9 0.00023 1 CL0251
Cotton_A_05988_CDS 107 128 107 129 PF02493.20 MORN Repeat 1 22 23 21.7 0.00013 1 CL0251
Cotton_A_05988_CDS 130 151 130 152 PF02493.20 MORN Repeat 1 22 23 16.1 0.0074 1 CL0251
Cotton_A_05988_CDS 153 173 153 174 PF02493.20 MORN Repeat 1 21 23 19.7 0.00055 1 CL0251
Cotton_A_05988_CDS 176 197 176 198 PF02493.20 MORN Repeat 1 22 23 29.3 4.6e-07 1 CL0251
Cotton_A_05988_CDS 199 220 199 221 PF02493.20 MORN Repeat 1 22 23 26.6 3.4e-06 1 CL0251
Cotton_A_05988_CDS 222 237 222 240 PF02493.20 MORN Repeat 1 16 23 5.6 16 1 CL0251
Cotton_A_12703_CDS 1041 1168 1040 1168 PF07926.12 TPR_MLP1_2 Coiled-coil 2 129 129 89.1 2.3e-25 1 No_clan
Cotton_A_23368_CDS 19 103 1 104 PF09187.10 RdDM_RDM1 Domain 25 101 119 62.9 2.7e-17 1 No_clan
Cotton_A_23004_CDS 143 307 142 308 PF00270.29 DEAD Domain 2 175 176 151.0 2.7e-44 1 CL0023
Cotton_A_23004_CDS 344 450 341 450 PF00271.31 Helicase_C Family 4 111 111 97.3 6.4e-28 1 CL0023
Cotton_A_32751_CDS 4 121 2 123 PF00153.27 Mito_carr Family 7 95 97 60.7 9.9e-17 1 No_clan
Cotton_A_32751_CDS 127 222 125 223 PF00153.27 Mito_carr Family 3 96 97 66.6 1.4e-18 1 No_clan
Cotton_A_32751_CDS 229 319 226 321 PF00153.27 Mito_carr Family 5 94 97 71.6 3.9e-20 1 No_clan
Cotton_A_11086_CDS 221 358 221 358 PF07526.11 POX Domain 1 136 136 170.8 2.1e-50 1 No_clan
Cotton_A_11086_CDS 425 464 425 464 PF05920.11 Homeobox_KN Family 1 40 40 62.9 1.9e-17 1 CL0123
Cotton_A_24872_CDS 58 124 58 127 PF00076.22 RRM_1 Domain 1 66 70 63.9 9.1e-18 1 CL0221
Cotton_A_26659_CDS 239 348 230 355 PF00201.18 UDPGT Family 273 365 499 46.3 2.6e-12 1 CL0113
Cotton_A_08883_CDS 40 179 39 180 PF03018.14 Dirigent Family 2 147 148 167.3 1.9e-49 1 CL0650
Cotton_A_26484_CDS 24 56 22 56 PF14369.6 zinc_ribbon_9 Domain 3 35 35 45.8 5.1e-12 1 CL0167
Cotton_A_26484_CDS 218 261 218 261 PF13639.6 zf-RING_2 Domain 1 44 44 49.4 4.2e-13 1 CL0229
Cotton_A_08359_CDS 8 80 3 82 PF00248.21 Aldo_ket_red Domain 173 264 294 33.0 3.4e-08 1 No_clan
Cotton_A_31197_CDS 326 681 326 681 PF04515.12 Choline_transpo Family 1 326 326 270.1 2.5e-80 1 No_clan
Cotton_A_01047_CDS 96 146 96 147 PF03107.16 C1_2 Domain 1 46 47 35.7 7.7e-09 1 CL0006
Cotton_A_01047_CDS 157 198 156 199 PF03107.16 C1_2 Domain 2 46 47 27.1 3.7e-06 1 CL0006
Cotton_A_01047_CDS 209 264 209 265 PF03107.16 C1_2 Domain 1 46 47 31.9 1.3e-07 1 CL0006
Cotton_A_17761_CDS 20 274 19 277 PF00704.28 Glyco_hydro_18 Domain 2 309 312 101.0 1e-28 1 CL0058
Cotton_A_28190_CDS 106 266 104 363 PF00270.29 DEAD Domain 3 151 176 84.2 9.1e-24 1 CL0023
Cotton_A_28190_CDS 424 518 406 518 PF00271.31 Helicase_C Family 16 111 111 73.4 1.7e-20 1 CL0023
Cotton_A_19169_CDS 15 183 15 192 PF01582.20 TIR Family 1 163 176 144.1 3.8e-42 1 CL0173
Cotton_A_19169_CDS 207 419 194 428 PF00931.22 NB-ARC Domain 17 233 252 105.4 2.7e-30 1 CL0023
Cotton_A_35218_CDS 62 190 62 190 PF03952.16 Enolase_N Domain 1 131 131 186.6 1.8e-55 1 CL0227
Cotton_A_35218_CDS 199 486 198 488 PF00113.22 Enolase_C Domain 2 293 296 495.3 5.3e-149 1 CL0256
Cotton_A_00722_CDS 31 76 28 89 PF00170.21 bZIP_1 Family 5 50 64 41.1 1.4e-10 1 CL0018
Cotton_A_01600_CDS 16 178 15 178 PF03248.13 Rer1 Family 2 171 171 244.5 4.8e-73 1 No_clan
Cotton_A_07362_CDS 81 401 81 401 PF12215.8 Glyco_hydr_116N Family 1 312 312 371.6 3.6e-111 1 CL0103
Cotton_A_07362_CDS 531 892 531 892 PF04685.13 DUF608 Domain 1 361 361 517.4 2e-155 1 CL0059
Cotton_A_27525_CDS 24 289 24 289 PF03936.16 Terpene_synth_C Domain 1 267 267 307.8 6e-92 1 CL0613
Cotton_A_06723_CDS 40 154 22 155 PF02469.22 Fasciclin Domain 17 127 128 29.3 7.9e-07 1 No_clan
Cotton_A_36346_CDS 19 94 19 94 PF10714.9 LEA_6 Family 1 75 75 116.2 5.1e-34 1 No_clan
Cotton_A_28255_CDS 1 18 1 25 PF02533.15 PsbK Family 20 37 41 37.4 2.1e-09 1 No_clan
Cotton_A_01957_CDS 45 94 44 95 PF00847.20 AP2 Domain 2 53 54 50.6 1.6e-13 1 CL0081
Cotton_A_00878_CDS 399 497 399 504 PF00168.30 C2 Domain 1 96 103 47.4 1.8e-12 1 CL0154
Cotton_A_03664_CDS 38 120 9 122 PF02519.14 Auxin_inducible Family 9 88 90 87.7 4.4e-25 1 No_clan
Cotton_A_09090_CDS 208 225 206 229 PF13202.6 EF-hand_5 Domain 4 21 25 14.8 0.015 1 CL0220
Cotton_A_09090_CDS 242 265 239 266 PF00036.32 EF-hand_1 Domain 5 28 29 28.9 4.7e-07 1 CL0220
Cotton_A_09090_CDS 408 459 408 460 PF13833.6 EF-hand_8 Domain 2 54 55 37.8 1.3e-09 1 CL0220
Cotton_A_36944_CDS 1 181 1 181 PF14299.6 PP2 Family 5 146 146 161.5 1.3e-47 1 No_clan
Cotton_A_25394_CDS 13 145 12 145 PF05871.12 ESCRT-II Family 2 140 140 148.7 1.2e-43 1 CL0123
Cotton_A_25114_CDS 14 174 14 175 PF00071.22 Ras Domain 1 161 162 200.8 9.7e-60 1 CL0023
Cotton_A_37935_CDS 5 60 2 61 PF10440.9 WIYLD Domain 5 60 61 61.0 7e-17 1 CL0214
Cotton_A_37935_CDS 159 306 159 306 PF05033.16 Pre-SET Family 1 109 109 63.4 2.6e-17 1 No_clan
Cotton_A_37935_CDS 326 443 326 443 PF00856.28 SET Family 1 169 169 43.2 5.3e-11 1 No_clan
Cotton_A_33539_CDS 126 224 126 231 PF04788.12 DUF620 Family 1 102 243 113.6 9.3e-33 1 No_clan
Cotton_A_33539_CDS 227 384 222 384 PF04788.12 DUF620 Family 85 243 243 233.4 2.5e-69 1 No_clan
Cotton_A_35395_CDS 39 95 39 95 PF08246.12 Inhibitor_I29 Domain 1 58 58 65.8 3.5e-18 1 No_clan
Cotton_A_35395_CDS 128 345 128 345 PF00112.23 Peptidase_C1 Domain 1 218 218 278.0 7.2e-83 1 CL0125
Cotton_A_27564_CDS 4 76 2 78 PF00574.23 CLP_protease Domain 108 179 182 68.0 9.4e-19 1 CL0127
Cotton_A_06671_CDS 53 204 53 204 PF00005.27 ABC_tran Domain 1 137 137 83.1 2.5e-23 1 CL0023
Cotton_A_06671_CDS 454 660 453 660 PF01061.24 ABC2_membrane Family 2 210 210 121.0 4.3e-35 1 CL0181
Cotton_A_20149_CDS 54 87 53 99 PF00643.24 zf-B_box Domain 2 35 42 25.2 1.4e-05 1 No_clan
Cotton_A_26461_CDS 393 530 392 531 PF01764.25 Lipase_3 Family 2 141 142 91.5 4.1e-26 1 CL0028
Cotton_A_08487_CDS 4 193 4 193 PF01956.16 EMC3_TMCO1 Family 1 170 170 177.9 1.4e-52 1 CL0376
Cotton_A_34041_CDS 167 410 164 412 PF00931.22 NB-ARC Domain 4 250 252 152.9 8.5e-45 1 CL0023
Cotton_A_34041_CDS 608 665 607 666 PF13855.6 LRR_8 Repeat 2 59 61 29.0 6.6e-07 1 CL0022
Cotton_A_25397_CDS 5 93 1 93 PF07777.11 MFMR Family 5 97 97 95.1 2.8e-27 1 No_clan
Cotton_A_25397_CDS 132 266 132 266 PF16596.5 MFMR_assoc Disordered 1 134 134 168.2 1.2e-49 1 No_clan
Cotton_A_25397_CDS 299 361 299 362 PF00170.21 bZIP_1 Family 1 63 64 70.1 1.3e-19 1 CL0018
Cotton_A_26387_CDS 171 334 170 339 PF04055.21 Radical_SAM Domain 2 165 167 59.9 3.9e-16 1 CL0036
Cotton_A_06306_CDS 36 428 36 442 PF00067.22 p450 Domain 1 393 463 286.1 4.7e-85 1 No_clan
Cotton_A_06152_CDS 28 211 28 211 PF00445.18 Ribonuclease_T2 Domain 1 182 182 191.0 2.2e-56 1 No_clan
Cotton_A_00339_CDS 10 113 7 122 PF05340.12 DUF740 Family 4 111 609 106.6 1.5e-30 1 No_clan
Cotton_A_00339_CDS 128 424 116 454 PF05340.12 DUF740 Family 186 552 609 273.5 4.2e-81 1 No_clan
Cotton_A_10635_CDS 242 510 241 510 PF00732.19 GMC_oxred_N Domain 2 296 296 221.6 1.4e-65 1 CL0063
Cotton_A_10635_CDS 603 736 588 737 PF05199.13 GMC_oxred_C Domain 21 143 144 82.2 5.2e-23 1 No_clan
Cotton_A_08079_CDS 1 100 1 100 PF00685.27 Sulfotransfer_1 Domain 179 267 267 67.0 1.8e-18 1 CL0023
Cotton_A_00290_CDS 53 109 42 109 PF03765.15 CRAL_TRIO_N Domain 1 54 54 35.5 8.2e-09 1 CL0214
Cotton_A_00290_CDS 131 292 130 293 PF00650.20 CRAL_TRIO Domain 3 158 159 109.6 1.2e-31 1 CL0512
Cotton_A_24390_CDS 82 116 81 117 PF00400.32 WD40 Repeat 4 37 38 31.0 3.1e-07 1 CL0186
Cotton_A_24390_CDS 291 324 287 324 PF00400.32 WD40 Repeat 6 38 38 33.8 3.9e-08 1 CL0186
Cotton_A_02843_CDS 30 74 28 74 PF08263.12 LRRNT_2 Family 3 41 41 36.8 3.6e-09 1 No_clan
Cotton_A_02843_CDS 82 138 77 138 PF13855.6 LRR_8 Repeat 6 61 61 31.2 1.4e-07 1 CL0022
Cotton_A_02843_CDS 222 282 222 282 PF13855.6 LRR_8 Repeat 1 61 61 31.5 1.1e-07 1 CL0022
Cotton_A_02843_CDS 319 378 318 378 PF13855.6 LRR_8 Repeat 2 61 61 28.0 1.4e-06 1 CL0022
Cotton_A_02843_CDS 463 522 462 522 PF13855.6 LRR_8 Repeat 2 61 61 35.4 6.7e-09 1 CL0022
Cotton_A_02843_CDS 580 618 572 618 PF13855.6 LRR_8 Repeat 23 61 61 28.4 1e-06 1 CL0022
Cotton_A_02843_CDS 761 1020 756 1023 PF00069.25 Pkinase Domain 6 260 264 158.2 2.5e-46 1 CL0016
Cotton_A_02671_CDS 172 227 172 227 PF02045.15 CBFB_NFYA Family 1 56 56 89.3 1.8e-25 1 No_clan
Cotton_A_24090_CDS 17 409 16 412 PF01490.18 Aa_trans Family 2 406 409 360.6 9.1e-108 1 CL0062
Cotton_A_03026_CDS 85 135 84 136 PF00847.20 AP2 Domain 2 53 54 46.1 4.2e-12 1 CL0081
Cotton_A_06561_CDS 42 492 42 500 PF00067.22 p450 Domain 1 454 463 317.7 1.2e-94 1 No_clan
Cotton_A_07391_CDS 13 428 13 468 PF05221.17 AdoHcyase Domain 1 245 299 393.0 7.7e-118 1 CL0325
Cotton_A_07391_CDS 240 403 240 403 PF00670.21 AdoHcyase_NAD Domain 1 162 162 280.7 3.6e-84 1 CL0063
Cotton_A_00187_CDS 281 568 244 600 PF08553.10 VID27 Domain 35 305 356 143.1 1.1e-41 1 CL0186
Cotton_A_31954_CDS 41 252 41 252 PF06764.11 DUF1223 Family 1 202 202 218.9 6.8e-65 1 CL0172
Cotton_A_28157_CDS 29 323 14 323 PF08744.10 NOZZLE Family 36 335 335 70.3 2e-19 1 No_clan
Cotton_A_16762_CDS 48 193 33 232 PF09184.11 PPP4R2 Family 23 156 288 51.2 1.3e-13 1 No_clan
Cotton_A_20961_CDS 312 495 310 501 PF04484.12 QWRF Family 3 172 300 149.9 1.3e-43 1 No_clan
Cotton_A_20961_CDS 565 656 555 656 PF04484.12 QWRF Family 209 300 300 130.9 7.8e-38 1 No_clan
Cotton_A_14277_CDS 9 152 9 153 PF00179.26 UQ_con Domain 1 139 140 145.3 8.9e-43 1 CL0208
Cotton_A_30898_CDS 61 280 38 288 PF00481.21 PP2C Family 29 251 258 121.9 3.5e-35 1 CL0238
Cotton_A_18916_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 55.2 6e-15 1 CL0123
Cotton_A_18916_CDS 67 109 67 111 PF00249.31 Myb_DNA-binding Domain 1 43 46 51.0 1.2e-13 1 CL0123
Cotton_A_04562_CDS 33 70 31 70 PF08263.12 LRRNT_2 Family 3 41 41 37.7 1.9e-09 1 No_clan
Cotton_A_04562_CDS 123 140 123 168 PF00560.33 LRR_1 Repeat 1 18 23 9.5 1.7 1 CL0022
Cotton_A_04562_CDS 195 254 194 254 PF13855.6 LRR_8 Repeat 2 61 61 30.3 2.5e-07 1 CL0022
Cotton_A_04562_CDS 506 564 505 564 PF13855.6 LRR_8 Repeat 2 61 61 29.5 4.6e-07 1 CL0022
Cotton_A_04562_CDS 684 955 683 958 PF00069.25 Pkinase Domain 2 260 264 151.3 3.3e-44 1 CL0016
Cotton_A_00492_CDS 77 261 77 262 PF14543.6 TAXi_N Domain 1 177 178 148.4 2.4e-43 1 CL0129
Cotton_A_00492_CDS 280 430 279 431 PF14541.6 TAXi_C Domain 2 160 161 83.7 1.2e-23 1 CL0129
Cotton_A_00846_CDS 49 360 48 364 PF01937.19 DUF89 Family 2 349 353 183.4 5.7e-54 1 No_clan
Cotton_A_03702_CDS 70 186 70 186 PF08446.11 PAS_2 Domain 1 107 107 131.0 2.5e-38 1 CL0183
Cotton_A_03702_CDS 220 344 219 355 PF01590.26 GAF Domain 2 97 133 73.7 2.2e-20 1 CL0161
Cotton_A_13752_CDS 160 262 160 262 PF08414.10 NADPH_Ox Family 1 101 101 131.8 9.8e-39 1 CL0220
Cotton_A_13752_CDS 422 579 421 579 PF01794.19 Ferric_reduct Family 2 125 125 78.6 4.2e-22 1 CL0328
Cotton_A_13752_CDS 621 734 620 735 PF08022.12 FAD_binding_8 Domain 2 108 109 119.0 9.7e-35 1 CL0076
Cotton_A_13752_CDS 741 915 741 916 PF08030.12 NAD_binding_6 Domain 1 155 156 175.5 8.1e-52 1 CL0091
Cotton_A_11298_CDS 88 129 87 129 PF13639.6 zf-RING_2 Domain 2 42 44 41.8 1e-10 1 CL0229
Cotton_A_16267_CDS 50 106 49 107 PF00847.20 AP2 Domain 2 53 54 29.3 7.5e-07 1 CL0081
Cotton_A_16267_CDS 149 200 149 201 PF00847.20 AP2 Domain 1 53 54 44.6 1.3e-11 1 CL0081
Cotton_A_38225_CDS 136 195 135 195 PF13855.6 LRR_8 Repeat 2 61 61 29.1 6.3e-07 1 CL0022
Cotton_A_38225_CDS 232 291 231 291 PF13855.6 LRR_8 Repeat 2 61 61 34.2 1.6e-08 1 CL0022
Cotton_A_38225_CDS 399 602 399 670 PF00069.25 Pkinase Domain 1 201 264 135.6 1.9e-39 1 CL0016
Cotton_A_20347_CDS 149 489 135 489 PF00930.21 DPPIV_N Family 23 354 354 271.1 1.1e-80 1 CL0186
Cotton_A_20347_CDS 576 774 574 775 PF00326.21 Peptidase_S9 Domain 3 208 212 177.2 2.9e-52 1 CL0028
Cotton_A_06778_CDS 44 468 44 468 PF00026.23 Asp Family 1 315 315 445.0 1.5e-133 1 CL0129
Cotton_A_06778_CDS 278 311 278 311 PF03489.17 SapB_2 Family 1 34 34 46.5 2.8e-12 1 No_clan
Cotton_A_06778_CDS 342 378 341 378 PF05184.15 SapB_1 Domain 2 38 38 55.5 4.1e-15 1 No_clan
Cotton_A_11525_CDS 37 120 37 121 PF10178.9 PAC3 Family 1 85 86 89.7 9.7e-26 1 No_clan
Cotton_A_01956_CDS 52 155 49 162 PF00168.30 C2 Domain 9 96 103 43.8 2.4e-11 1 CL0154
Cotton_A_01956_CDS 198 289 194 300 PF00168.30 C2 Domain 8 93 103 39.7 4.7e-10 1 CL0154
Cotton_A_01956_CDS 361 575 361 576 PF07002.16 Copine Family 1 217 218 268.8 3e-80 1 CL0128
Cotton_A_23448_CDS 25 606 24 606 PF02705.16 K_trans Family 2 534 534 632.4 5.7e-190 1 CL0062
Cotton_A_28585_CDS 29 125 22 127 PF03070.16 TENA_THI-4 Family 15 114 210 34.9 1.3e-08 1 CL0230
Cotton_A_28585_CDS 150 236 141 238 PF03070.16 TENA_THI-4 Family 121 206 210 24.2 2.5e-05 1 CL0230
Cotton_A_08361_CDS 54 215 54 217 PF14306.6 PUA_2 Domain 1 157 159 155.6 7.9e-46 1 CL0178
Cotton_A_08361_CDS 226 447 225 448 PF01747.17 ATP-sulfurylase Domain 2 211 212 216.9 2.1e-64 1 CL0039
Cotton_A_27794_CDS 1 960 1 960 PF04762.12 IKI3 Family 1 931 931 767.3 2.2e-230 1 CL0186
Cotton_A_16674_CDS 144 178 144 178 PF08880.11 QLQ Domain 1 35 35 52.4 3.2e-14 1 No_clan
Cotton_A_16674_CDS 215 257 215 257 PF08879.10 WRC Domain 1 43 43 74.7 3.3e-21 1 No_clan
Cotton_A_14418_CDS 274 305 269 306 PF00400.32 WD40 Repeat 7 37 38 28.4 2e-06 1 CL0186
Cotton_A_14418_CDS 373 408 372 409 PF00400.32 WD40 Repeat 2 37 38 28.9 1.4e-06 1 CL0186
Cotton_A_14418_CDS 414 450 413 451 PF00400.32 WD40 Repeat 2 37 38 24.7 3e-05 1 CL0186
Cotton_A_17196_CDS 10 57 10 57 PF00319.18 SRF-TF Domain 1 48 48 87.5 2.9e-25 1 No_clan
Cotton_A_28452_CDS 10 134 10 134 PF02365.15 NAM Family 1 126 126 134.2 4.6e-39 1 No_clan
Cotton_A_37331_CDS 67 115 66 117 PF13812.6 PPR_3 Repeat 2 50 63 37.8 1.5e-09 1 CL0020
Cotton_A_11331_CDS 78 456 78 456 PF00285.21 Citrate_synt Domain 1 361 361 342.5 2.8e-102 1 No_clan
Cotton_A_35752_CDS 242 270 242 272 PF02985.22 HEAT Repeat 1 29 31 21.7 0.00015 1 CL0020
Cotton_A_35752_CDS 361 459 360 461 PF13646.6 HEAT_2 Family 2 86 88 42.2 8.1e-11 1 CL0020
Cotton_A_22495_CDS 13 228 13 228 PF00318.20 Ribosomal_S2 Family 1 215 215 258.0 4.9e-77 1 CL0067
Cotton_A_22495_CDS 289 487 288 488 PF00119.20 ATP-synt_A Domain 2 210 211 169.9 7.2e-50 1 No_clan
Cotton_A_09714_CDS 98 142 97 143 PF00249.31 Myb_DNA-binding Domain 2 44 46 43.9 2e-11 1 CL0123
Cotton_A_33404_CDS 82 121 82 121 PF01476.20 LysM Domain 6 44 44 24.5 2.1e-05 1 CL0187
Cotton_A_22101_CDS 56 98 55 98 PF13639.6 zf-RING_2 Domain 2 44 44 52.0 6.5e-14 1 CL0229
Cotton_A_29537_CDS 7 29 6 29 PF01754.16 zf-A20 Family 2 24 24 40.6 1.8e-10 1 No_clan
Cotton_A_29537_CDS 69 105 69 106 PF01428.16 zf-AN1 Family 1 39 40 32.4 7.7e-08 1 No_clan
Cotton_A_28562_CDS 24 90 24 90 PF02874.23 ATP-synt_ab_N Domain 1 69 69 50.8 1.8e-13 1 CL0275
Cotton_A_28562_CDS 147 377 147 377 PF00006.25 ATP-synt_ab Domain 1 213 213 227.9 1e-67 1 CL0023
Cotton_A_08180_CDS 72 308 61 310 PF07714.17 Pkinase_Tyr Domain 14 257 259 91.3 5.8e-26 1 CL0016
Cotton_A_09022_CDS 4 53 4 63 PF04145.15 Ctr Family 1 50 148 38.9 1.3e-09 1 No_clan
Cotton_A_09022_CDS 77 111 55 111 PF04145.15 Ctr Family 104 138 148 37.1 4.5e-09 1 No_clan
Cotton_A_11176_CDS 35 301 34 301 PF02309.16 AUX_IAA Family 2 237 237 298.0 5.9e-89 1 CL0072
Cotton_A_35662_CDS 41 111 22 147 PF03124.14 EXS Family 119 184 331 45.8 4.8e-12 1 CL0182
Cotton_A_27520_CDS 96 154 94 155 PF00170.21 bZIP_1 Family 5 63 64 49.8 2.7e-13 1 CL0018
Cotton_A_31346_CDS 88 502 80 505 PF00067.22 p450 Domain 34 460 463 243.0 5.4e-72 1 No_clan
Cotton_A_31346_CDS 593 993 580 1014 PF00067.22 p450 Domain 29 439 463 251.8 1.1e-74 1 No_clan
Cotton_A_22717_CDS 51 140 25 140 PF00583.25 Acetyltransf_1 Family 28 117 117 59.9 2.6e-16 1 CL0257
Cotton_A_28273_CDS 1 232 1 236 PF01255.19 Prenyltransf Family 2 219 224 213.9 2.1e-63 1 No_clan
Cotton_A_05502_CDS 15 111 13 111 PF17800.1 NPL Domain 3 105 105 51.1 1.6e-13 1 CL0055
Cotton_A_03239_CDS 86 370 86 370 PF01643.17 Acyl-ACP_TE Family 1 248 248 292.4 2.4e-87 1 CL0050
Cotton_A_29976_CDS 120 154 117 155 PF00400.32 WD40 Repeat 4 37 38 28.1 2.5e-06 1 CL0186
Cotton_A_29976_CDS 176 211 173 211 PF00400.32 WD40 Repeat 4 38 38 25.3 1.9e-05 1 CL0186
Cotton_A_29976_CDS 227 248 219 255 PF00400.32 WD40 Repeat 9 32 38 15.4 0.027 1 CL0186
Cotton_A_29976_CDS 276 301 258 301 PF00400.32 WD40 Repeat 13 38 38 12.7 0.19 1 CL0186
Cotton_A_29976_CDS 314 344 305 345 PF00400.32 WD40 Repeat 9 37 38 15.6 0.023 1 CL0186
Cotton_A_23664_CDS 18 82 18 87 PF00076.22 RRM_1 Domain 1 63 70 50.1 1.7e-13 1 CL0221
Cotton_A_23664_CDS 106 169 106 175 PF00076.22 RRM_1 Domain 1 63 70 61.1 6.4e-17 1 CL0221
Cotton_A_23664_CDS 353 423 353 423 PF00076.22 RRM_1 Domain 1 70 70 60.4 1.1e-16 1 CL0221
Cotton_A_18667_CDS 65 153 64 159 PF00069.25 Pkinase Domain 2 90 264 66.8 1.8e-18 1 CL0016
Cotton_A_06910_CDS 107 158 107 158 PF00249.31 Myb_DNA-binding Domain 1 46 46 26.0 7.6e-06 1 CL0123
Cotton_A_15323_CDS 29 111 28 111 PF00626.22 Gelsolin Domain 2 76 76 54.2 9.6e-15 1 CL0092
Cotton_A_15323_CDS 150 217 148 221 PF00626.22 Gelsolin Domain 3 70 76 43.0 3.1e-11 1 CL0092
Cotton_A_15323_CDS 292 340 290 346 PF00626.22 Gelsolin Domain 3 52 76 33.3 3.3e-08 1 CL0092
Cotton_A_15323_CDS 1022 1057 1022 1057 PF02209.19 VHP Domain 1 36 36 58.6 4.5e-16 1 No_clan
Cotton_A_36834_CDS 15 65 15 66 PF00847.20 AP2 Domain 1 53 54 47.6 1.5e-12 1 CL0081
Cotton_A_29096_CDS 231 374 213 406 PF00201.18 UDPGT Family 274 390 499 80.4 1.2e-22 1 CL0113
Cotton_A_36875_CDS 43 358 43 358 PF00251.20 Glyco_hydro_32N Domain 1 305 305 346.5 1.6e-103 1 CL0143
Cotton_A_36875_CDS 361 553 358 554 PF08244.12 Glyco_hydro_32C Domain 4 157 158 95.8 2.5e-27 1 CL0004
Cotton_A_31241_CDS 55 214 52 219 PF00270.29 DEAD Domain 4 168 176 56.9 2.1e-15 1 CL0023
Cotton_A_31241_CDS 406 520 402 523 PF00271.31 Helicase_C Family 5 107 111 65.8 4e-18 1 CL0023
Cotton_A_31241_CDS 593 678 593 680 PF03368.14 Dicer_dimer Domain 1 90 92 88.1 3.3e-25 1 CL0196
Cotton_A_31241_CDS 909 1045 899 1047 PF02170.22 PAZ Domain 23 135 137 51.1 1.1e-13 1 CL0638
Cotton_A_31241_CDS 1087 1222 1087 1222 PF00636.26 Ribonuclease_3 Family 1 105 105 92.9 1.6e-26 1 CL0539
Cotton_A_31241_CDS 1295 1403 1295 1404 PF00636.26 Ribonuclease_3 Family 1 104 105 78.4 5.6e-22 1 CL0539
Cotton_A_02150_CDS 11 357 11 357 PF00274.19 Glycolytic Domain 1 349 349 572.2 3e-172 1 CL0035
Cotton_A_22262_CDS 233 266 233 268 PF00320.27 GATA Domain 1 34 36 55.5 3.1e-15 1 CL0167
Cotton_A_30722_CDS 43 301 43 302 PF02485.21 Branch Family 1 246 247 230.3 2.4e-68 1 CL0110
Cotton_A_07319_CDS 32 98 32 107 PF00067.22 p450 Domain 1 69 463 35.3 5.3e-09 1 No_clan
Cotton_A_07319_CDS 343 492 333 504 PF00067.22 p450 Domain 307 447 463 143.8 6.6e-42 1 No_clan
Cotton_A_23556_CDS 16 109 14 116 PF00307.31 CH Domain 4 102 109 40.9 1.9e-10 1 CL0188
Cotton_A_23556_CDS 210 248 210 248 PF03271.17 EB1 Family 1 41 41 72.2 2.9e-20 1 No_clan
Cotton_A_28430_CDS 53 508 53 512 PF00067.22 p450 Domain 1 459 463 362.9 2.3e-108 1 No_clan
Cotton_A_24707_CDS 111 156 109 158 PF13041.6 PPR_2 Repeat 3 48 50 31.2 1.8e-07 1 CL0020
Cotton_A_24707_CDS 221 269 220 269 PF13041.6 PPR_2 Repeat 2 50 50 59.7 2.4e-16 1 CL0020
Cotton_A_24707_CDS 285 298 283 298 PF01535.20 PPR Family 18 31 31 9.8 0.99 1 CL0020
Cotton_A_24707_CDS 304 333 303 333 PF01535.20 PPR Family 2 31 31 9.8 1 1 CL0020
Cotton_A_24707_CDS 335 381 335 384 PF13041.6 PPR_2 Repeat 1 47 50 51.0 1.2e-13 1 CL0020
Cotton_A_24707_CDS 441 488 441 490 PF13041.6 PPR_2 Repeat 1 48 50 35.8 6.5e-09 1 CL0020
Cotton_A_19095_CDS 56 132 51 136 PF12643.7 MazG-like Domain 6 80 85 40.1 3.3e-10 1 CL0231
Cotton_A_15707_CDS 519 664 518 685 PF04548.16 AIG1 Domain 2 138 212 78.5 4.4e-22 1 CL0023
Cotton_A_15707_CDS 884 1148 883 1149 PF11886.8 TOC159_MAD Family 2 266 267 427.9 9.8e-129 1 No_clan
Cotton_A_32920_CDS 21 201 21 205 PF00450.22 Peptidase_S10 Domain 1 180 419 219.2 1.3e-64 1 CL0028
Cotton_A_32920_CDS 208 478 201 479 PF00450.22 Peptidase_S10 Domain 161 418 419 176.3 1.3e-51 1 CL0028
Cotton_A_21592_CDS 61 164 61 173 PF14226.6 DIOX_N Family 1 102 118 77.7 1.1e-21 1 CL0029
Cotton_A_21592_CDS 225 323 224 323 PF03171.20 2OG-FeII_Oxy Domain 2 101 101 97.8 4.3e-28 1 CL0029
Cotton_A_08043_CDS 66 182 65 183 PF00383.23 dCMP_cyt_deam_1 Family 2 100 101 89.6 9.7e-26 1 CL0109
Cotton_A_27421_CDS 82 184 81 187 PF02374.15 ArsA_ATPase Domain 2 97 305 80.7 1e-22 1 CL0023
Cotton_A_27421_CDS 186 354 183 357 PF02374.15 ArsA_ATPase Domain 134 302 305 110.4 9.1e-32 1 CL0023
Cotton_A_09489_CDS 13 401 11 401 PF00079.20 Serpin Domain 3 371 371 287.9 1.3e-85 1 No_clan
Cotton_A_20379_CDS 90 151 89 151 PF13855.6 LRR_8 Repeat 2 61 61 32.4 5.6e-08 1 CL0022
Cotton_A_23577_CDS 77 289 77 298 PF07859.13 Abhydrolase_3 Domain 1 200 211 149.9 8.6e-44 1 CL0028
Cotton_A_21798_CDS 228 407 228 407 PF04833.15 COBRA Family 1 165 165 204.2 1.2e-60 1 No_clan
Cotton_A_08650_CDS 105 232 105 233 PF03364.20 Polyketide_cyc Family 1 129 130 70.1 2e-19 1 CL0209
Cotton_A_25469_CDS 1 111 1 112 PF03947.18 Ribosomal_L2_C Domain 11 120 126 106.8 8.6e-31 1 CL0107
Cotton_A_16946_CDS 72 256 72 256 PF06733.15 DEAD_2 Family 1 176 176 177.9 1.4e-52 1 CL0023
Cotton_A_16946_CDS 270 412 269 413 PF06777.11 HBB Domain 2 189 190 89.1 2.8e-25 1 No_clan
Cotton_A_16946_CDS 524 697 524 700 PF13307.6 Helicase_C_2 Domain 1 168 171 142.7 1.3e-41 1 CL0023
Cotton_A_18112_CDS 11 131 11 178 PF00856.28 SET Family 1 95 169 28.4 1.9e-06 1 No_clan
Cotton_A_22328_CDS 3 128 1 130 PF00069.25 Pkinase Domain 137 260 264 60.7 1.3e-16 1 CL0016
Cotton_A_17691_CDS 55 303 55 306 PF02705.16 K_trans Family 1 213 534 255.7 7.5e-76 1 CL0062
Cotton_A_02079_CDS 34 214 32 214 PF01105.24 EMP24_GP25L Domain 3 182 182 169.4 7.3e-50 1 CL0521
Cotton_A_17932_CDS 33 341 30 341 PF03291.16 Pox_MCEL Family 4 333 333 343.6 1.1e-102 1 CL0063
Cotton_A_03113_CDS 61 105 60 105 PF13639.6 zf-RING_2 Domain 2 44 44 50.2 2.4e-13 1 CL0229
Cotton_A_32358_CDS 47 71 45 152 PF05097.12 DUF688 Family 59 89 446 22.3 6.5e-05 1 No_clan
Cotton_A_29930_CDS 1 221 1 224 PF07714.17 Pkinase_Tyr Domain 54 256 259 134.7 3.4e-39 1 CL0016
Cotton_A_34431_CDS 18 98 18 98 PF02298.17 Cu_bind_like Domain 1 84 84 86.2 1.1e-24 1 CL0026
Cotton_A_33256_CDS 130 321 130 324 PF04389.17 Peptidase_M28 Family 1 195 198 124.8 3.3e-36 1 CL0035
Cotton_A_20260_CDS 319 453 314 454 PF07738.13 Sad1_UNC Family 6 131 132 122.8 8.7e-36 1 CL0202
Cotton_A_26489_CDS 44 137 44 137 PF02629.19 CoA_binding Domain 1 96 96 111.6 2.2e-32 1 CL0063
Cotton_A_26489_CDS 190 311 190 312 PF00549.19 Ligase_CoA Domain 1 152 153 80.9 8.1e-23 1 CL0506
Cotton_A_17681_CDS 47 276 46 277 PF01774.17 UreD Family 2 212 213 208.5 1.1e-61 1 No_clan
Cotton_A_26020_CDS 250 308 250 308 PF08031.12 BBE Domain 1 46 46 74.6 4.9e-21 1 CL0277
Cotton_A_11135_CDS 24 248 22 257 PF00561.20 Abhydrolase_1 Domain 3 249 257 57.1 2.1e-15 1 CL0028
Cotton_A_37770_CDS 131 222 131 222 PF16656.5 Pur_ac_phosph_N Domain 1 94 94 83.6 1.1e-23 1 CL0159
Cotton_A_37770_CDS 232 430 232 430 PF00149.28 Metallophos Domain 1 204 204 76.4 4.2e-21 1 CL0163
Cotton_A_37770_CDS 456 517 456 519 PF14008.6 Metallophos_C Domain 1 61 63 67.6 1.3e-18 1 No_clan
Cotton_A_13616_CDS 2 178 1 179 PF04511.15 DER1 Family 15 190 191 137.7 4.2e-40 1 CL0207
Cotton_A_06010_CDS 114 233 104 266 PF00860.20 Xan_ur_permease Family 33 151 389 43.6 1.6e-11 1 CL0062
Cotton_A_06010_CDS 262 517 249 520 PF00860.20 Xan_ur_permease Family 140 385 389 60.0 1.6e-16 1 CL0062
Cotton_A_03643_CDS 44 579 44 579 PF16969.5 SRP68 Family 1 559 559 546.0 1.4e-163 1 No_clan
Cotton_A_34532_CDS 91 272 39 272 PF02309.16 AUX_IAA Family 67 237 237 201.4 1.9e-59 1 CL0072
Cotton_A_40555_CDS 84 131 70 165 PF00069.25 Pkinase Domain 154 200 264 50.9 1.4e-13 1 CL0016
Cotton_A_01470_CDS 46 283 46 285 PF00149.28 Metallophos Domain 1 202 204 37.3 4.1e-09 1 CL0163
Cotton_A_27929_CDS 92 118 92 121 PF01535.20 PPR Family 1 27 31 15.1 0.02 1 CL0020
Cotton_A_27929_CDS 123 153 123 153 PF01535.20 PPR Family 1 31 31 35.2 7.9e-09 1 CL0020
Cotton_A_27929_CDS 223 264 222 270 PF13041.6 PPR_2 Repeat 2 43 50 38.6 9.2e-10 1 CL0020
Cotton_A_27929_CDS 298 319 298 324 PF01535.20 PPR Family 4 25 31 13.1 0.087 1 CL0020
Cotton_A_27929_CDS 326 356 326 356 PF01535.20 PPR Family 1 31 31 19.0 0.0011 1 CL0020
Cotton_A_27929_CDS 425 472 424 473 PF13041.6 PPR_2 Repeat 2 49 50 40.1 3e-10 1 CL0020
Cotton_A_18258_CDS 24 108 24 121 PF00005.27 ABC_tran Domain 1 82 137 42.5 8.7e-11 1 CL0023
Cotton_A_10816_CDS 29 539 25 543 PF01602.20 Adaptin_N Family 5 519 524 435.4 2.8e-130 1 CL0020
Cotton_A_10816_CDS 622 767 621 768 PF08752.10 COP-gamma_platf Domain 2 151 152 187.5 1.5e-55 1 CL0159
Cotton_A_10816_CDS 770 823 770 823 PF16381.5 Coatomer_g_Cpla Domain 1 54 115 49.6 3.9e-13 1 CL0545
Cotton_A_38357_CDS 36 68 36 69 PF13181.6 TPR_8 Repeat 1 33 34 16.1 0.0093 1 CL0020
Cotton_A_38357_CDS 71 102 70 103 PF13181.6 TPR_8 Repeat 2 33 34 12.8 0.11 1 CL0020
Cotton_A_38357_CDS 163 238 162 238 PF04969.16 CS Domain 2 76 76 50.5 3.2e-13 1 CL0190
Cotton_A_38357_CDS 281 360 280 360 PF05002.15 SGS Domain 2 83 83 123.4 3.1e-36 1 No_clan
Cotton_A_27016_CDS 37 120 35 121 PF00564.24 PB1 Domain 3 83 84 51.7 6.4e-14 1 CL0072
Cotton_A_07061_CDS 24 81 22 81 PF00046.29 Homeodomain Domain 4 57 57 58.3 5e-16 1 CL0123
Cotton_A_07061_CDS 163 370 162 372 PF01852.19 START Domain 2 207 209 159.5 7.2e-47 1 CL0209
Cotton_A_07061_CDS 708 851 707 851 PF08670.11 MEKHLA Domain 2 143 143 165.4 7.3e-49 1 CL0183
Cotton_A_39775_CDS 58 225 11 303 PF00083.24 Sugar_tr Family 43 217 452 101.4 5.2e-29 1 CL0015
Cotton_A_39775_CDS 334 479 318 482 PF00083.24 Sugar_tr Family 291 446 452 39.4 3.5e-10 1 CL0015
Cotton_A_09808_CDS 38 89 25 94 PF02046.15 COX6A Family 35 96 112 27.6 3.1e-06 1 No_clan
Cotton_A_15517_CDS 217 328 217 334 PF02536.14 mTERF Family 1 113 314 52.0 4.9e-14 1 No_clan
Cotton_A_15517_CDS 280 473 279 493 PF02536.14 mTERF Family 101 294 314 123.6 7.6e-36 1 No_clan
Cotton_A_33144_CDS 748 777 747 781 PF07498.12 Rho_N Family 2 31 43 26.2 5.5e-06 1 CL0306
Cotton_A_10710_CDS 86 331 62 337 PF00481.21 PP2C Family 31 251 258 138.6 2.8e-40 1 CL0238
Cotton_A_05979_CDS 21 444 20 445 PF01490.18 Aa_trans Family 2 408 409 198.9 1.1e-58 1 CL0062
Cotton_A_35203_CDS 26 75 25 76 PF00847.20 AP2 Domain 2 53 54 49.1 5e-13 1 CL0081
Cotton_A_37726_CDS 94 117 94 120 PF01535.20 PPR Family 4 27 31 13.0 0.092 1 CL0020
Cotton_A_37726_CDS 120 166 119 168 PF13041.6 PPR_2 Repeat 2 48 50 38.7 8.3e-10 1 CL0020
Cotton_A_37726_CDS 195 216 195 222 PF01535.20 PPR Family 4 25 31 10.0 0.88 1 CL0020
Cotton_A_37726_CDS 296 322 296 323 PF01535.20 PPR Family 4 30 31 15.7 0.013 1 CL0020
Cotton_A_37726_CDS 324 353 324 354 PF01535.20 PPR Family 1 30 31 23.4 4.6e-05 1 CL0020
Cotton_A_37726_CDS 501 526 499 528 PF01535.20 PPR Family 4 29 31 16.4 0.0078 1 CL0020
Cotton_A_37726_CDS 527 574 526 575 PF13041.6 PPR_2 Repeat 2 49 50 35.0 1.2e-08 1 CL0020
Cotton_A_15419_CDS 66 306 66 307 PF00856.28 SET Family 1 168 169 44.5 2.1e-11 1 No_clan
Cotton_A_21283_CDS 22 354 21 429 PF01156.19 IU_nuc_hydro Domain 2 271 305 130.6 8.6e-38 1 No_clan
Cotton_A_21283_CDS 484 832 483 833 PF01156.19 IU_nuc_hydro Domain 2 304 305 130.5 9.6e-38 1 No_clan
Cotton_A_19786_CDS 159 191 158 191 PF12579.8 DUF3755 Family 2 34 34 47.5 9.6e-13 1 No_clan
Cotton_A_27607_CDS 222 237 220 237 PF01422.17 zf-NF-X1 Family 4 19 19 6.5 8.6 1 No_clan
Cotton_A_27607_CDS 275 293 275 293 PF01422.17 zf-NF-X1 Family 1 19 19 26.1 6.5e-06 1 No_clan
Cotton_A_27607_CDS 339 356 339 357 PF01422.17 zf-NF-X1 Family 1 18 19 17.9 0.0025 1 No_clan
Cotton_A_27607_CDS 399 414 397 415 PF01422.17 zf-NF-X1 Family 3 18 19 20.1 0.0005 1 No_clan
Cotton_A_27607_CDS 455 466 455 466 PF01422.17 zf-NF-X1 Family 1 12 19 5.5 18 1 No_clan
Cotton_A_27607_CDS 493 510 493 511 PF01422.17 zf-NF-X1 Family 1 18 19 22.6 8.1e-05 1 No_clan
Cotton_A_27607_CDS 550 567 550 567 PF01422.17 zf-NF-X1 Family 1 19 19 8.2 2.6 1 No_clan
Cotton_A_27607_CDS 603 618 603 621 PF01422.17 zf-NF-X1 Family 1 16 19 13.4 0.061 1 No_clan
Cotton_A_27607_CDS 635 657 631 662 PF01422.17 zf-NF-X1 Family 1 16 19 4.3 44 1 No_clan
Cotton_A_06883_CDS 72 330 72 332 PF01501.20 Glyco_transf_8 Family 1 254 256 159.0 1.6e-46 1 CL0110
Cotton_A_19388_CDS 10 177 10 178 PF00071.22 Ras Domain 1 161 162 190.4 1.6e-56 1 CL0023
Cotton_A_32097_CDS 103 255 102 256 PF08389.12 Xpo1 Family 2 148 149 82.0 4.3e-23 1 CL0020
Cotton_A_05446_CDS 62 334 62 335 PF00732.19 GMC_oxred_N Domain 1 295 296 104.4 7.2e-30 1 CL0063
Cotton_A_05446_CDS 430 576 430 578 PF05199.13 GMC_oxred_C Domain 1 142 144 95.4 4.3e-27 1 No_clan
Cotton_A_18691_CDS 19 89 19 89 PF11976.8 Rad60-SLD Family 1 72 72 88.2 2.3e-25 1 CL0072
Cotton_A_09953_CDS 49 161 49 163 PF14226.6 DIOX_N Family 1 116 118 89.7 2.2e-25 1 CL0029
Cotton_A_09953_CDS 214 309 212 309 PF03171.20 2OG-FeII_Oxy Domain 5 101 101 85.2 3.5e-24 1 CL0029
Cotton_A_28462_CDS 30 117 12 117 PF00227.26 Proteasome Domain 100 190 190 104.9 3.5e-30 1 CL0052
Cotton_A_18475_CDS 194 211 194 216 PF02493.20 MORN Repeat 1 18 23 18.2 0.0016 1 CL0251
Cotton_A_18475_CDS 217 239 217 239 PF02493.20 MORN Repeat 1 23 23 21.7 0.00013 1 CL0251
Cotton_A_18475_CDS 240 261 240 262 PF02493.20 MORN Repeat 1 22 23 25.2 9.8e-06 1 CL0251
Cotton_A_18475_CDS 263 284 263 285 PF02493.20 MORN Repeat 1 22 23 19.8 0.00049 1 CL0251
Cotton_A_18475_CDS 286 307 286 308 PF02493.20 MORN Repeat 1 22 23 22.4 7.5e-05 1 CL0251
Cotton_A_18475_CDS 309 330 309 331 PF02493.20 MORN Repeat 1 22 23 25.5 8e-06 1 CL0251
Cotton_A_18475_CDS 332 354 332 354 PF02493.20 MORN Repeat 1 23 23 25.4 8.3e-06 1 CL0251
Cotton_A_11811_CDS 55 158 1 161 PF00596.21 Aldolase_II Domain 79 175 186 62.5 4.8e-17 1 No_clan
Cotton_A_18147_CDS 26 74 25 76 PF13418.6 Kelch_4 Repeat 2 46 49 33.4 3.3e-08 1 CL0186
Cotton_A_18147_CDS 78 116 78 127 PF13418.6 Kelch_4 Repeat 1 41 49 33.3 3.6e-08 1 CL0186
Cotton_A_18147_CDS 126 170 125 170 PF13854.6 Kelch_5 Repeat 2 42 42 31.1 1.7e-07 1 CL0186
Cotton_A_35824_CDS 187 455 183 456 PF07714.17 Pkinase_Tyr Domain 5 258 259 161.1 3e-47 1 CL0016
Cotton_A_11475_CDS 75 490 74 491 PF00654.20 Voltage_CLC Family 2 353 354 315.2 6.1e-94 1 No_clan
Cotton_A_11475_CDS 640 686 632 688 PF00571.28 CBS Domain 8 51 57 16.8 0.0068 1 No_clan
Cotton_A_14717_CDS 15 82 15 82 PF08154.12 NLE Domain 1 65 65 75.2 4.4e-21 1 CL0072
Cotton_A_14717_CDS 143 185 143 185 PF00400.32 WD40 Repeat 1 38 38 22.3 0.00017 1 CL0186
Cotton_A_14717_CDS 202 235 198 236 PF00400.32 WD40 Repeat 5 37 38 25.8 1.3e-05 1 CL0186
Cotton_A_14717_CDS 266 302 265 302 PF00400.32 WD40 Repeat 2 38 38 17.0 0.0082 1 CL0186
Cotton_A_14717_CDS 353 390 351 390 PF00400.32 WD40 Repeat 3 38 38 22.2 0.00019 1 CL0186
Cotton_A_13055_CDS 65 322 64 322 PF02104.15 SURF1 Family 2 176 176 141.9 2.4e-41 1 No_clan
Cotton_A_30919_CDS 62 163 62 172 PF14226.6 DIOX_N Family 1 111 118 93.5 1.4e-26 1 CL0029
Cotton_A_30919_CDS 218 314 214 314 PF03171.20 2OG-FeII_Oxy Domain 5 101 101 90.5 8e-26 1 CL0029
Cotton_A_37574_CDS 7 224 7 284 PF05368.13 NmrA Family 1 229 233 217.3 2.1e-64 1 CL0063
Cotton_A_04641_CDS 25 66 24 66 PF08263.12 LRRNT_2 Family 4 41 41 29.9 5.1e-07 1 No_clan
Cotton_A_04641_CDS 119 141 119 141 PF00560.33 LRR_1 Repeat 1 23 23 10.2 1 1 CL0022
Cotton_A_04641_CDS 192 250 191 251 PF13855.6 LRR_8 Repeat 2 60 61 32.2 6.4e-08 1 CL0022
Cotton_A_04641_CDS 382 442 382 442 PF13855.6 LRR_8 Repeat 1 61 61 29.0 6.8e-07 1 CL0022
Cotton_A_24636_CDS 1 97 1 97 PF00925.20 GTP_cyclohydro2 Family 68 163 163 114.0 5e-33 1 No_clan
Cotton_A_06406_CDS 49 222 46 223 PF00574.23 CLP_protease Domain 8 181 182 223.9 1.4e-66 1 CL0127
Cotton_A_26131_CDS 44 212 43 217 PF02776.18 TPP_enzyme_N Domain 2 165 172 122.8 1.1e-35 1 CL0254
Cotton_A_26131_CDS 241 357 241 374 PF00205.22 TPP_enzyme_M Domain 1 117 137 75.1 4.2e-21 1 CL0085
Cotton_A_26131_CDS 451 576 427 576 PF02775.21 TPP_enzyme_C Domain 24 153 153 50.7 1.6e-13 1 CL0254
Cotton_A_02618_CDS 198 315 195 316 PF00651.31 BTB Domain 4 110 111 82.0 3.5e-23 1 CL0033
Cotton_A_37203_CDS 31 310 30 310 PF07651.16 ANTH Domain 2 277 277 240.2 2e-71 1 CL0009
Cotton_A_09139_CDS 127 174 115 177 PF13812.6 PPR_3 Repeat 13 60 63 21.2 0.00023 1 CL0020
Cotton_A_09139_CDS 197 245 197 246 PF13041.6 PPR_2 Repeat 1 49 50 47.5 1.4e-12 1 CL0020
Cotton_A_09139_CDS 269 317 269 318 PF13041.6 PPR_2 Repeat 1 49 50 49.6 3.2e-13 1 CL0020
Cotton_A_09139_CDS 342 370 341 370 PF01535.20 PPR Family 2 30 31 14.2 0.039 1 CL0020
Cotton_A_27858_CDS 169 234 168 236 PF01363.21 FYVE Domain 2 66 68 69.3 2.3e-19 1 CL0390
Cotton_A_27858_CDS 351 476 350 477 PF04366.12 Ysc84 Family 2 127 128 122.5 8.6e-36 1 No_clan
Cotton_A_40399_CDS 115 133 113 133 PF00612.27 IQ Motif 3 21 21 25.0 9.6e-06 1 CL0220
Cotton_A_40399_CDS 136 153 135 155 PF00612.27 IQ Motif 2 19 21 18.5 0.0012 1 CL0220
Cotton_A_40399_CDS 438 524 423 528 PF13178.6 DUF4005 Family 19 89 93 54.2 1.7e-14 1 No_clan
Cotton_A_17973_CDS 154 183 153 183 PF01535.20 PPR Family 2 31 31 10.1 0.78 1 CL0020
Cotton_A_17973_CDS 189 233 185 234 PF13041.6 PPR_2 Repeat 5 49 50 34.6 1.6e-08 1 CL0020
Cotton_A_17973_CDS 255 302 255 304 PF13041.6 PPR_2 Repeat 1 48 50 56.5 2.3e-15 1 CL0020
Cotton_A_17973_CDS 329 358 328 358 PF01535.20 PPR Family 2 31 31 18.6 0.0015 1 CL0020
Cotton_A_17973_CDS 361 409 360 409 PF13041.6 PPR_2 Repeat 2 50 50 61.3 7.4e-17 1 CL0020
Cotton_A_17973_CDS 430 459 426 459 PF12854.7 PPR_1 Repeat 5 34 34 38.2 8.1e-10 1 CL0020
Cotton_A_17973_CDS 466 513 465 514 PF13041.6 PPR_2 Repeat 2 49 50 57.1 1.5e-15 1 CL0020
Cotton_A_17973_CDS 577 598 573 602 PF01535.20 PPR Family 6 27 31 11.0 0.41 1 CL0020
Cotton_A_33161_CDS 9 266 9 266 PF00069.25 Pkinase Domain 1 264 264 239.9 3e-71 1 CL0016
Cotton_A_22614_CDS 70 164 45 165 PF02309.16 AUX_IAA Family 120 227 237 109.2 2.7e-31 1 CL0072
Cotton_A_07887_CDS 3 76 1 80 PF03171.20 2OG-FeII_Oxy Domain 23 96 101 63.7 1.8e-17 1 CL0029
Cotton_A_20672_CDS 66 559 63 559 PF04109.16 APG9 Family 4 479 479 553.0 6.6e-166 1 No_clan
Cotton_A_18759_CDS 6 28 6 28 PF10584.9 Proteasome_A_N Domain 1 23 23 52.3 3.3e-14 1 CL0052
Cotton_A_18759_CDS 29 214 29 214 PF00227.26 Proteasome Domain 1 190 190 198.3 7.9e-59 1 CL0052
Cotton_A_07806_CDS 199 413 198 414 PF13086.6 AAA_11 Domain 2 260 261 199.0 1.1e-58 1 CL0023
Cotton_A_07806_CDS 422 618 421 619 PF13087.6 AAA_12 Domain 2 198 199 200.6 2e-59 1 CL0023
Cotton_A_27057_CDS 16 97 6 107 PF02362.21 B3 Family 14 90 101 41.9 6.8e-11 1 CL0405
Cotton_A_24578_CDS 3 115 1 119 PF03140.15 DUF247 Family 67 183 397 68.2 7.7e-19 1 No_clan
Cotton_A_25138_CDS 563 794 562 795 PF04842.12 DUF639 Family 2 230 231 277.1 1e-82 1 CL0484
Cotton_A_25012_CDS 157 375 149 375 PF03151.16 TPT Family 71 290 290 277.5 1.2e-82 1 CL0184
Cotton_A_11514_CDS 359 400 357 400 PF13639.6 zf-RING_2 Domain 3 44 44 47.0 2.4e-12 1 CL0229
Cotton_A_15194_CDS 34 104 33 114 PF08240.12 ADH_N Domain 2 62 109 28.9 8.2e-07 1 CL0296
Cotton_A_15194_CDS 204 333 204 333 PF13602.6 ADH_zinc_N_2 Domain 1 133 133 66.5 4.7e-18 1 CL0063
Cotton_A_35618_CDS 248 307 248 307 PF00462.24 Glutaredoxin Domain 1 60 60 40.0 3.3e-10 1 CL0172
Cotton_A_35618_CDS 370 436 368 436 PF00610.21 DEP Domain 3 72 72 56.1 2.9e-15 1 CL0123
Cotton_A_35618_CDS 515 642 514 642 PF04784.14 DUF547 Family 2 123 123 119.7 7.4e-35 1 No_clan
Cotton_A_21899_CDS 42 95 42 95 PF05605.12 zf-Di19 Domain 1 54 54 76.8 1.1e-21 1 CL0361
Cotton_A_21899_CDS 115 214 115 214 PF14571.6 Di19_C Family 1 102 102 123.2 5.2e-36 1 No_clan
Cotton_A_01647_CDS 56 314 56 316 PF01501.20 Glyco_transf_8 Family 1 254 256 170.6 4.4e-50 1 CL0110
Cotton_A_27455_CDS 14 69 9 71 PF13456.6 RVT_3 Domain 64 122 124 32.3 7e-08 1 CL0219
Cotton_A_21257_CDS 51 98 50 99 PF00400.32 WD40 Repeat 2 37 38 17.3 0.0063 1 CL0186
Cotton_A_21257_CDS 114 149 107 149 PF00400.32 WD40 Repeat 7 38 38 20.0 0.00093 1 CL0186
Cotton_A_21257_CDS 217 257 211 257 PF00400.32 WD40 Repeat 6 38 38 16.3 0.013 1 CL0186
Cotton_A_21257_CDS 302 345 295 346 PF00400.32 WD40 Repeat 7 37 38 12.3 0.25 1 CL0186
Cotton_A_21257_CDS 404 441 404 442 PF00400.32 WD40 Repeat 1 37 38 20.0 0.00092 1 CL0186
Cotton_A_21257_CDS 689 719 682 719 PF00400.32 WD40 Repeat 8 37 38 23.0 0.0001 1 CL0186
Cotton_A_20024_CDS 1 125 1 125 PF00705.18 PCNA_N Domain 1 127 127 196.7 9.5e-59 1 CL0060
Cotton_A_20024_CDS 127 254 127 254 PF02747.15 PCNA_C Domain 1 128 128 205.7 2.1e-61 1 CL0060
Cotton_A_29560_CDS 1 50 1 51 PF00646.33 F-box Domain 6 47 48 25.1 1.2e-05 1 CL0271
Cotton_A_29560_CDS 61 338 61 338 PF01167.18 Tub Domain 1 241 241 296.5 1.7e-88 1 CL0395
Cotton_A_19528_CDS 15 533 12 535 PF01602.20 Adaptin_N Family 4 522 524 534.9 2e-160 1 CL0020
Cotton_A_19528_CDS 684 774 675 780 PF02883.20 Alpha_adaptinC2 Domain 9 105 111 31.3 2e-07 1 CL0159
Cotton_A_19528_CDS 790 899 790 899 PF09066.10 B2-adapt-app_C Domain 1 112 112 98.9 1.8e-28 1 CL0545
Cotton_A_04964_CDS 26 123 25 124 PF01657.17 Stress-antifung Family 2 94 95 56.5 3.3e-15 1 No_clan
Cotton_A_04964_CDS 153 235 144 236 PF01657.17 Stress-antifung Family 13 94 95 34.1 3.1e-08 1 No_clan
Cotton_A_09481_CDS 64 185 64 186 PF09335.11 SNARE_assoc Family 1 119 120 77.7 9.6e-22 1 No_clan
Cotton_A_32703_CDS 35 84 30 88 PF00403.26 HMA Domain 6 58 62 27.8 2.5e-06 1 No_clan
Cotton_A_07376_CDS 258 318 256 322 PF04576.15 Zein-binding Family 3 63 92 79.7 1.5e-22 1 No_clan
Cotton_A_14129_CDS 183 357 86 357 PF13532.6 2OG-FeII_Oxy_2 Domain 39 196 196 135.9 1.9e-39 1 CL0029
Cotton_A_33363_CDS 84 358 83 361 PF00069.25 Pkinase Domain 2 260 264 168.4 1.9e-49 1 CL0016
Cotton_A_07234_CDS 67 174 64 193 PF12146.8 Hydrolase_4 Family 4 113 239 32.2 6.3e-08 1 CL0028
Cotton_A_18184_CDS 2 106 1 107 PF00069.25 Pkinase Domain 159 258 264 41.5 9.6e-11 1 CL0016
Cotton_A_12594_CDS 3 74 3 74 PF00240.23 ubiquitin Domain 1 72 72 116.6 3e-34 1 CL0072
Cotton_A_12594_CDS 102 147 102 147 PF01599.19 Ribosomal_S27 Domain 1 45 45 94.7 2.6e-27 1 CL0167
Cotton_A_38379_CDS 59 113 58 114 PF00046.29 Homeodomain Domain 2 56 57 60.7 8.9e-17 1 CL0123
Cotton_A_38379_CDS 248 466 247 466 PF01852.19 START Domain 2 209 209 193.4 2.9e-57 1 CL0209
Cotton_A_23734_CDS 18 96 1 96 PF14368.6 LTP_2 Family 18 97 97 55.6 4.1e-15 1 CL0482
Cotton_A_27428_CDS 136 276 127 277 PF00005.27 ABC_tran Domain 10 136 137 62.4 6e-17 1 CL0023
Cotton_A_27428_CDS 436 646 434 646 PF01061.24 ABC2_membrane Family 3 210 210 93.0 1.6e-26 1 CL0181
Cotton_A_34493_CDS 31 201 31 201 PF01397.21 Terpene_synth Domain 1 192 192 205.7 5.3e-61 1 No_clan
Cotton_A_34493_CDS 232 497 232 497 PF03936.16 Terpene_synth_C Domain 1 267 267 347.5 4.5e-104 1 CL0613
Cotton_A_27411_CDS 28 327 28 329 PF00124.19 Photo_RC Family 1 258 260 327.7 4.1e-98 1 No_clan
Cotton_A_15231_CDS 271 389 236 436 PF00201.18 UDPGT Family 274 385 499 77.3 1e-21 1 CL0113
Cotton_A_01627_CDS 286 343 286 343 PF04844.13 Ovate Family 1 58 58 88.2 2.6e-25 1 No_clan
Cotton_A_40558_CDS 127 202 124 202 PF07915.13 PRKCSH Family 6 81 81 58.3 1.1e-15 1 CL0226
Cotton_A_14472_CDS 1 102 1 102 PF00255.19 GSHPx Family 8 108 108 141.6 6.1e-42 1 CL0172
Cotton_A_39670_CDS 27 164 27 164 PF05615.13 THOC7 Family 1 132 132 103.2 1.2e-29 1 No_clan
Cotton_A_35986_CDS 60 93 59 93 PF08880.11 QLQ Domain 2 35 35 39.4 3.8e-10 1 No_clan
Cotton_A_35986_CDS 130 172 130 172 PF08879.10 WRC Domain 1 43 43 76.6 8.1e-22 1 No_clan
Cotton_A_18089_CDS 47 188 47 188 PF02365.15 NAM Family 1 126 126 87.9 9.7e-25 1 No_clan
Cotton_A_18466_CDS 6 80 6 80 PF03671.14 Ufm1 Family 1 75 75 145.1 4.9e-43 1 CL0072
Cotton_A_30894_CDS 26 103 10 103 PF00271.31 Helicase_C Family 42 111 111 24.6 2.5e-05 1 CL0023
Cotton_A_30894_CDS 157 425 157 426 PF13234.6 rRNA_proc-arch Domain 1 269 270 215.3 1.5e-63 1 No_clan
Cotton_A_30894_CDS 467 582 448 582 PF08148.12 DSHCT Domain 60 164 164 103.9 6.8e-30 1 No_clan
Cotton_A_12787_CDS 107 168 105 169 PF13432.6 TPR_16 Family 3 67 68 26.3 8.7e-06 1 CL0020
Cotton_A_16187_CDS 15 245 14 248 PF05477.11 SURF2 Family 2 233 236 210.6 2.6e-62 1 CL0131
Cotton_A_37500_CDS 46 117 46 117 PF04749.17 PLAC8 Family 1 99 99 65.4 7.2e-18 1 No_clan
Cotton_A_11805_CDS 25 247 22 250 PF02230.16 Abhydrolase_2 Domain 5 214 217 143.6 7.6e-42 1 CL0028
Cotton_A_22378_CDS 125 178 104 178 PF01722.18 BolA Family 24 76 76 47.4 1.7e-12 1 No_clan
Cotton_A_34176_CDS 9 31 9 32 PF00173.28 Cyt-b5 Domain 1 23 74 24.8 1.8e-05 1 No_clan
Cotton_A_34750_CDS 97 122 96 122 PF01535.20 PPR Family 6 31 31 24.6 1.9e-05 1 CL0020
Cotton_A_34750_CDS 124 150 123 151 PF01535.20 PPR Family 2 28 31 14.5 0.031 1 CL0020
Cotton_A_34750_CDS 156 200 156 202 PF13041.6 PPR_2 Repeat 1 45 50 51.3 9.4e-14 1 CL0020
Cotton_A_34750_CDS 226 274 226 275 PF13041.6 PPR_2 Repeat 1 49 50 48.5 7e-13 1 CL0020
Cotton_A_27917_CDS 59 163 57 163 PF01477.23 PLAT Domain 3 117 117 63.0 3.7e-17 1 CL0321
Cotton_A_27917_CDS 177 220 176 224 PF00305.19 Lipoxygenase Domain 2 45 674 53.1 1.8e-14 1 No_clan
Cotton_A_03766_CDS 31 487 31 488 PF00450.22 Peptidase_S10 Domain 1 418 419 484.9 2.9e-145 1 CL0028
Cotton_A_23311_CDS 240 266 232 271 PF00400.32 WD40 Repeat 9 34 38 13.8 0.082 1 CL0186
Cotton_A_23311_CDS 284 314 275 315 PF00400.32 WD40 Repeat 9 37 38 19.3 0.0016 1 CL0186
Cotton_A_21034_CDS 110 279 110 282 PF01512.17 Complex1_51K Family 1 148 152 159.4 5.7e-47 1 CL0105
Cotton_A_21034_CDS 306 355 305 357 PF10531.9 SLBB Domain 2 56 58 33.0 4.1e-08 1 CL0072
Cotton_A_21034_CDS 396 478 395 479 PF10589.9 NADH_4Fe-4S Domain 2 84 85 99.4 9e-29 1 No_clan
Cotton_A_01538_CDS 68 111 67 111 PF13639.6 zf-RING_2 Domain 2 44 44 42.9 4.5e-11 1 CL0229
Cotton_A_30018_CDS 109 258 107 258 PF02544.16 Steroid_dh Family 3 150 150 184.5 1.1e-54 1 CL0115
Cotton_A_08186_CDS 6 47 6 48 PF14555.6 UBA_4 Domain 1 42 43 50.5 1.3e-13 1 CL0214
Cotton_A_08186_CDS 497 576 495 577 PF00789.20 UBX Domain 3 80 81 65.4 3.9e-18 1 CL0072
Cotton_A_04374_CDS 11 88 9 89 PF18052.1 Rx_N Domain 3 79 93 63.0 2.3e-17 1 No_clan
Cotton_A_37740_CDS 53 291 50 291 PF00956.18 NAP Family 7 270 270 278.2 5.8e-83 1 No_clan
Cotton_A_23954_CDS 94 222 51 226 PF00504.21 Chloroa_b-bind Family 25 157 161 34.2 3.3e-08 1 No_clan
Cotton_A_08217_CDS 104 147 102 148 PF12937.7 F-box-like Domain 3 47 48 28.3 1.2e-06 1 CL0271
Cotton_A_11927_CDS 6 55 5 56 PF00847.20 AP2 Domain 2 53 54 43.3 3.1e-11 1 CL0081
Cotton_A_40953_CDS 29 164 29 166 PF09229.11 Aha1_N Domain 1 134 137 113.2 1e-32 1 CL0648
Cotton_A_40953_CDS 234 351 228 352 PF08327.11 AHSA1 Family 7 124 125 45.1 1e-11 1 CL0209
Cotton_A_15968_CDS 6 329 6 330 PF16363.5 GDP_Man_Dehyd Domain 1 331 332 222.3 1.1e-65 1 CL0063
Cotton_A_18417_CDS 80 163 80 163 PF14547.6 Hydrophob_seed Domain 1 85 85 98.9 1.5e-28 1 CL0482
Cotton_A_26310_CDS 142 192 141 193 PF00847.20 AP2 Domain 2 53 54 49.7 3.2e-13 1 CL0081
Cotton_A_02462_CDS 4 75 3 76 PF02798.20 GST_N Domain 2 75 76 58.3 7e-16 1 CL0172
Cotton_A_02462_CDS 114 191 72 193 PF00043.25 GST_C Domain 18 90 93 46.0 4.4e-12 1 CL0497
Cotton_A_08445_CDS 20 50 20 50 PF00397.26 WW Domain 1 31 31 29.1 7.7e-07 1 CL0680
Cotton_A_08445_CDS 191 361 191 361 PF00270.29 DEAD Domain 1 176 176 171.6 1.3e-50 1 CL0023
Cotton_A_08445_CDS 398 506 397 506 PF00271.31 Helicase_C Family 2 111 111 113.6 5.5e-33 1 CL0023
Cotton_A_25414_CDS 14 49 13 57 PF00782.20 DSPc Domain 85 120 133 31.4 1.4e-07 1 CL0031
Cotton_A_11383_CDS 129 387 128 388 PF01761.20 DHQ_synthase Domain 2 261 262 357.8 2.7e-107 1 CL0224
Cotton_A_30198_CDS 54 403 50 405 PF03283.13 PAE Family 5 353 355 529.7 3.4e-159 1 CL0028
Cotton_A_37671_CDS 21 153 20 174 PF00501.28 AMP-binding Family 2 135 423 74.5 6.3e-21 1 CL0378
Cotton_A_23825_CDS 67 177 66 201 PF12146.8 Hydrolase_4 Family 2 114 239 37.1 2e-09 1 CL0028
Cotton_A_21231_CDS 6 140 6 142 PF00578.21 AhpC-TSA Domain 1 122 124 99.1 1.6e-28 1 CL0172
Cotton_A_21231_CDS 162 197 162 200 PF10417.9 1-cysPrx_C Domain 1 36 40 41.2 1.1e-10 1 No_clan
Cotton_A_33924_CDS 60 159 60 173 PF14226.6 DIOX_N Family 1 98 118 66.1 4.6e-18 1 CL0029
Cotton_A_15033_CDS 365 501 363 501 PF04146.15 YTH Domain 3 166 166 138.7 1.6e-40 1 CL0178
Cotton_A_38073_CDS 3 77 3 77 PF08783.11 DWNN Domain 1 74 74 70.0 1.5e-19 1 CL0072
Cotton_A_38073_CDS 208 247 208 247 PF13923.6 zf-C3HC4_2 Domain 1 40 40 31.0 1.6e-07 1 CL0229
Cotton_A_38073_CDS 401 417 401 418 PF00098.23 zf-CCHC Domain 1 17 18 25.7 8.1e-06 1 CL0511
Cotton_A_31255_CDS 41 346 38 346 PF00069.25 Pkinase Domain 5 264 264 224.3 1.7e-66 1 CL0016
Cotton_A_24340_CDS 27 134 27 134 PF04398.12 DUF538 Family 1 112 112 105.5 2e-30 1 No_clan
Cotton_A_13692_CDS 78 177 76 178 PF00085.20 Thioredoxin Domain 3 102 103 103.0 7.2e-30 1 CL0172
Cotton_A_37681_CDS 136 189 136 192 PF04818.13 CTD_bind Family 1 58 63 33.3 6.3e-08 1 No_clan
Cotton_A_10253_CDS 81 121 74 121 PF00646.33 F-box Domain 8 48 48 20.9 0.00023 1 CL0271
Cotton_A_10253_CDS 231 262 231 262 PF13418.6 Kelch_4 Repeat 1 33 49 27.8 1.8e-06 1 CL0186
Cotton_A_10253_CDS 289 342 289 343 PF13418.6 Kelch_4 Repeat 1 48 49 30.2 3.4e-07 1 CL0186
Cotton_A_10253_CDS 344 389 344 398 PF13418.6 Kelch_4 Repeat 1 44 49 24.5 2e-05 1 CL0186
Cotton_A_10253_CDS 403 439 403 440 PF13418.6 Kelch_4 Repeat 1 37 49 22.6 7.5e-05 1 CL0186
Cotton_A_14433_CDS 165 355 147 364 PF00266.19 Aminotran_5 Domain 46 231 371 25.4 6.2e-06 1 CL0061
Cotton_A_11597_CDS 5 141 3 143 PF03800.14 Nuf2 Family 3 137 139 101.9 3e-29 1 No_clan
Cotton_A_29771_CDS 10 57 10 57 PF00319.18 SRF-TF Domain 1 48 48 81.1 2.9e-23 1 No_clan
Cotton_A_30724_CDS 1 79 1 79 PF00252.18 Ribosomal_L16 Family 51 132 132 103.8 6.7e-30 1 No_clan
Cotton_A_13356_CDS 11 104 10 105 PF03669.13 UPF0139 Family 2 96 97 119.2 5.2e-35 1 No_clan
Cotton_A_11483_CDS 30 82 17 84 PF14226.6 DIOX_N Family 15 67 118 49.4 6.9e-13 1 CL0029
Cotton_A_10646_CDS 3 55 1 59 PF04564.15 U-box Domain 7 59 73 21.7 0.00017 1 CL0229
Cotton_A_10646_CDS 65 131 65 132 PF08606.11 Prp19 Domain 1 67 68 109.5 5.6e-32 1 No_clan
Cotton_A_10646_CDS 256 292 255 293 PF00400.32 WD40 Repeat 2 37 38 31.2 2.6e-07 1 CL0186
Cotton_A_10646_CDS 388 423 386 423 PF00400.32 WD40 Repeat 3 38 38 18.9 0.0021 1 CL0186
Cotton_A_10646_CDS 474 512 473 512 PF00400.32 WD40 Repeat 2 37 38 19.8 0.001 1 CL0186
Cotton_A_34552_CDS 13 56 11 57 PF03107.16 C1_2 Domain 3 46 47 33.4 4.3e-08 1 CL0006
Cotton_A_07603_CDS 47 277 47 277 PF00006.25 ATP-synt_ab Domain 1 213 213 228.7 5.7e-68 1 CL0023
Cotton_A_08107_CDS 22 198 22 200 PF03643.15 Vps26 Family 1 176 275 223.8 2.1e-66 1 CL0135
Cotton_A_08107_CDS 199 268 198 269 PF03643.15 Vps26 Family 205 274 275 94.0 7.6e-27 1 CL0135
Cotton_A_25460_CDS 17 164 16 177 PF03357.21 Snf7 Family 2 152 173 133.6 5.4e-39 1 CL0235
Cotton_A_21456_CDS 111 473 110 475 PF03759.13 PRONE Family 2 361 363 579.7 1.9e-174 1 No_clan
Cotton_A_35174_CDS 1021 1273 977 1286 PF00176.23 SNF2_N Family 49 304 350 226.6 3.4e-67 1 CL0023
Cotton_A_35174_CDS 1302 1415 1301 1415 PF00271.31 Helicase_C Family 2 111 111 63.7 1.8e-17 1 CL0023
Cotton_A_35174_CDS 1510 1606 1509 1606 PF14619.6 SnAC Domain 2 77 77 83.8 9.7e-24 1 No_clan
Cotton_A_26885_CDS 4 227 4 227 PF10173.9 Mit_KHE1 Family 1 190 190 132.4 2e-38 1 No_clan
Cotton_A_22454_CDS 27 168 9 170 PF00083.24 Sugar_tr Family 305 449 452 70.8 1e-19 1 CL0015
Cotton_A_17162_CDS 34 195 34 200 PF00875.18 DNA_photolyase Domain 1 162 164 94.6 6.2e-27 1 CL0039
Cotton_A_03161_CDS 192 277 185 278 PF05132.14 RNA_pol_Rpc4 Family 60 148 149 87.8 9.2e-25 1 CL0662
Cotton_A_17781_CDS 23 276 7 280 PF02423.15 OCD_Mu_crystall Family 19 267 318 143.6 6.3e-42 1 CL0063
Cotton_A_02236_CDS 13 240 12 278 PF07795.11 DUF1635 Family 2 202 224 177.7 3e-52 1 No_clan
Cotton_A_15418_CDS 98 340 97 340 PF04788.12 DUF620 Family 2 243 243 348.7 1.5e-104 1 No_clan
Cotton_A_31962_CDS 28 335 24 339 PF00294.24 PfkB Family 6 298 302 262.2 6e-78 1 CL0118
Cotton_A_25792_CDS 94 428 91 430 PF02163.22 Peptidase_M50 Family 5 250 250 203.5 3.2e-60 1 CL0126
Cotton_A_25792_CDS 215 272 214 272 PF17820.1 PDZ_6 Domain 2 56 56 31.5 1.2e-07 1 CL0466
Cotton_A_18169_CDS 23 269 19 271 PF00139.19 Lectin_legB Domain 5 247 249 255.2 6.2e-76 1 CL0004
Cotton_A_18169_CDS 339 540 338 606 PF00069.25 Pkinase Domain 2 198 264 154.4 3.6e-45 1 CL0016
Cotton_A_22800_CDS 62 153 62 153 PF07911.13 DUF1677 Family 1 89 89 120.6 2.7e-35 1 No_clan
Cotton_A_04712_CDS 25 111 9 115 PF00085.20 Thioredoxin Domain 10 99 103 67.7 7.4e-19 1 CL0172
Cotton_A_34036_CDS 1 271 1 275 PF03016.15 Exostosin Family 40 298 300 230.3 2.8e-68 1 No_clan
Cotton_A_17482_CDS 111 427 111 429 PF01546.28 Peptidase_M20 Family 1 205 207 128.5 2.7e-37 1 CL0035
Cotton_A_17482_CDS 224 318 218 322 PF07687.14 M20_dimer Domain 9 105 109 40.4 2.2e-10 1 No_clan
Cotton_A_25337_CDS 55 162 55 165 PF14226.6 DIOX_N Family 1 115 118 95.3 4.2e-27 1 CL0029
Cotton_A_25337_CDS 212 307 209 309 PF03171.20 2OG-FeII_Oxy Domain 4 99 101 90.1 1e-25 1 CL0029
Cotton_A_40317_CDS 252 418 228 431 PF00201.18 UDPGT Family 258 413 499 109.0 2.6e-31 1 CL0113
Cotton_A_37904_CDS 83 170 83 184 PF01453.24 B_lectin Domain 1 92 105 73.0 2.5e-20 1 No_clan
Cotton_A_37904_CDS 247 308 227 312 PF00954.20 S_locus_glycop Domain 44 103 111 34.9 1.8e-08 1 No_clan
Cotton_A_37904_CDS 513 645 495 655 PF07714.17 Pkinase_Tyr Domain 27 158 259 54.7 9e-15 1 CL0016
Cotton_A_26688_CDS 76 113 76 113 PF01753.18 zf-MYND Domain 1 38 38 36.6 3.5e-09 1 CL0175
Cotton_A_26688_CDS 456 781 455 781 PF00443.29 UCH Family 2 257 257 129.4 1.6e-37 1 CL0125
Cotton_A_38655_CDS 41 152 41 152 PF08240.12 ADH_N Domain 1 109 109 107.3 3.5e-31 1 CL0296
Cotton_A_23625_CDS 21 355 21 358 PF11955.8 PORR Family 1 322 326 343.5 9.6e-103 1 No_clan
Cotton_A_27745_CDS 312 592 311 594 PF03016.15 Exostosin Family 2 298 300 228.5 1e-67 1 No_clan
Cotton_A_10217_CDS 174 231 174 231 PF08031.12 BBE Domain 1 46 46 80.1 9.4e-23 1 CL0277
Cotton_A_15627_CDS 28 207 26 216 PF00445.18 Ribonuclease_T2 Domain 3 178 182 103.9 1.2e-29 1 No_clan
Cotton_A_08984_CDS 10 54 9 57 PF00249.31 Myb_DNA-binding Domain 2 42 46 26.1 7e-06 1 CL0123
Cotton_A_08984_CDS 122 166 122 167 PF00249.31 Myb_DNA-binding Domain 3 45 46 43.8 2.1e-11 1 CL0123
Cotton_A_23186_CDS 9 180 9 180 PF03446.15 NAD_binding_2 Domain 1 158 158 157.7 2.6e-46 1 CL0063
Cotton_A_23186_CDS 185 480 185 480 PF00393.19 6PGD Domain 1 289 289 423.8 3.4e-127 1 CL0106
Cotton_A_11908_CDS 51 256 26 260 PF13360.6 PQQ_2 Domain 35 233 237 39.8 3.7e-10 1 CL0186
Cotton_A_11908_CDS 764 981 764 981 PF07774.13 EMC1_C Domain 1 213 213 215.0 9.4e-64 1 No_clan
Cotton_A_11452_CDS 41 282 41 283 PF00141.23 peroxidase Domain 1 228 229 256.3 2.6e-76 1 CL0617
Cotton_A_23117_CDS 40 65 39 66 PF05678.14 VQ Motif 2 27 28 40.1 1.8e-10 1 No_clan
Cotton_A_08062_CDS 46 363 46 365 PF00657.22 Lipase_GDSL Family 1 198 200 33.8 3.1e-08 1 CL0264
Cotton_A_17854_CDS 43 530 8 536 PF05701.11 WEMBL Family 41 557 562 70.6 1.1e-19 1 No_clan
Cotton_A_29466_CDS 126 310 122 310 PF00544.19 Pec_lyase_C Domain 29 211 211 94.8 5.4e-27 1 CL0268
Cotton_A_19096_CDS 81 145 81 145 PF00333.20 Ribosomal_S5 Domain 1 65 65 104.3 2.4e-30 1 CL0196
Cotton_A_19096_CDS 164 230 164 235 PF03719.15 Ribosomal_S5_C Domain 1 66 72 84.8 2e-24 1 CL0329
Cotton_A_27347_CDS 111 137 111 137 PF00642.24 zf-CCCH Family 1 27 27 37.2 1.9e-09 1 CL0537
Cotton_A_05148_CDS 14 62 14 62 PF00249.31 Myb_DNA-binding Domain 1 46 46 53.3 2.2e-14 1 CL0123
Cotton_A_05148_CDS 69 111 68 113 PF00249.31 Myb_DNA-binding Domain 2 44 46 40.1 3e-10 1 CL0123
Cotton_A_09207_CDS 14 254 14 254 PF13561.6 adh_short_C2 Domain 1 234 234 209.3 5.6e-62 1 CL0063
Cotton_A_23874_CDS 26 486 25 486 PF00083.24 Sugar_tr Family 2 452 452 380.9 8.4e-114 1 CL0015
Cotton_A_22674_CDS 252 377 252 377 PF07526.11 POX Domain 1 136 136 134.7 3e-39 1 No_clan
Cotton_A_22674_CDS 441 480 441 480 PF05920.11 Homeobox_KN Family 1 40 40 65.7 2.6e-18 1 CL0123
Cotton_A_26280_CDS 21 198 17 201 PF00687.21 Ribosomal_L1 Domain 3 196 204 120.6 7.3e-35 1 No_clan
Cotton_A_28219_CDS 2 71 1 71 PF12783.7 Sec7_N Domain 91 158 158 49.7 3.6e-13 1 No_clan
Cotton_A_28219_CDS 167 349 166 349 PF01369.20 Sec7 Domain 2 183 183 233.7 1.2e-69 1 No_clan
Cotton_A_28219_CDS 708 790 708 791 PF09324.10 DUF1981 Family 1 83 84 107.3 2.6e-31 1 No_clan
Cotton_A_05095_CDS 186 220 186 222 PF05627.11 AvrRpt-cleavage Domain 1 35 37 75.7 1.3e-21 1 No_clan
Cotton_A_38947_CDS 158 200 158 201 PF06203.14 CCT Motif 1 43 44 68.9 2.8e-19 1 CL0281
Cotton_A_23220_CDS 29 113 28 114 PF04043.15 PMEI Domain 2 90 154 46.1 6.5e-12 1 No_clan
Cotton_A_21484_CDS 8 39 7 39 PF14369.6 zinc_ribbon_9 Domain 2 35 35 43.5 2.7e-11 1 CL0167
Cotton_A_23579_CDS 111 209 110 209 PF03171.20 2OG-FeII_Oxy Domain 2 101 101 102.3 1.7e-29 1 CL0029
Cotton_A_14522_CDS 19 71 15 71 PF13966.6 zf-RVT Domain 32 84 85 44.5 1.8e-11 1 No_clan
Cotton_A_14522_CDS 91 169 51 173 PF13456.6 RVT_3 Domain 41 120 124 58.8 4.5e-16 1 CL0219
Cotton_A_25042_CDS 99 143 97 146 PF03004.14 Transposase_24 Family 3 48 142 25.0 1.6e-05 1 No_clan
Cotton_A_05421_CDS 15 107 14 109 PF00855.17 PWWP Domain 2 93 96 38.9 8.8e-10 1 CL0049
Cotton_A_05944_CDS 19 271 19 271 PF00069.25 Pkinase Domain 1 264 264 267.3 1.3e-79 1 CL0016
Cotton_A_05944_CDS 293 329 293 329 PF00627.31 UBA Domain 1 37 37 29.6 4.5e-07 1 CL0214
Cotton_A_05944_CDS 466 507 465 508 PF02149.19 KA1 Domain 2 44 45 49.2 3.3e-13 1 CL0573
Cotton_A_17649_CDS 47 183 28 183 PF04144.13 SCAMP Family 38 174 174 113.8 1e-32 1 No_clan
Cotton_A_29658_CDS 48 448 43 449 PF00501.28 AMP-binding Family 8 422 423 305.3 5.5e-91 1 CL0378
Cotton_A_29658_CDS 457 532 457 532 PF13193.6 AMP-binding_C Domain 1 76 76 63.9 2.1e-17 1 CL0531
Cotton_A_19236_CDS 29 141 29 141 PF01277.17 Oleosin Family 1 113 113 143.5 2e-42 1 No_clan
Cotton_A_05735_CDS 129 178 129 178 PF14570.6 zf-RING_4 Domain 1 48 48 58.9 3e-16 1 CL0229
Cotton_A_05735_CDS 391 1148 391 1159 PF03552.14 Cellulose_synt Family 1 711 722 1264.4 0 1 CL0110
Cotton_A_09384_CDS 57 172 50 193 PF00675.20 Peptidase_M16 Family 9 117 149 80.4 1.3e-22 1 CL0094
Cotton_A_09384_CDS 210 389 209 392 PF05193.21 Peptidase_M16_C Domain 2 180 183 66.7 2.5e-18 1 CL0094
Cotton_A_09384_CDS 705 878 691 882 PF05193.21 Peptidase_M16_C Domain 16 178 183 58.7 7.1e-16 1 CL0094
Cotton_A_16043_CDS 30 307 30 319 PF14576.6 SEO_N Family 1 278 287 382.3 1.3e-114 1 No_clan
Cotton_A_16043_CDS 466 694 465 695 PF14577.6 SEO_C Family 2 231 232 303.2 1.1e-90 1 No_clan
Cotton_A_11133_CDS 1182 1232 1182 1232 PF14237.6 GYF_2 Domain 1 50 50 51.9 4.9e-14 1 CL0673
Cotton_A_11133_CDS 1573 1611 1567 1616 PF00226.31 DnaJ Domain 11 52 63 39.9 3.5e-10 1 CL0392
Cotton_A_09912_CDS 93 243 92 244 PF04043.15 PMEI Domain 2 152 154 122.3 2.2e-35 1 No_clan
Cotton_A_22312_CDS 33 139 32 140 PF02392.16 Ycf4 Family 71 177 178 155.7 8.7e-46 1 No_clan
Cotton_A_22435_CDS 93 369 89 369 PF07714.17 Pkinase_Tyr Domain 5 259 259 161.0 3.1e-47 1 CL0016
Cotton_A_36956_CDS 86 113 85 115 PF01535.20 PPR Family 2 29 31 9.8 1 1 CL0020
Cotton_A_36956_CDS 116 146 116 146 PF01535.20 PPR Family 1 31 31 28.1 1.4e-06 1 CL0020
Cotton_A_36956_CDS 188 213 188 215 PF01535.20 PPR Family 4 29 31 12.8 0.11 1 CL0020
Cotton_A_36956_CDS 216 243 216 244 PF01535.20 PPR Family 1 28 31 23.9 3.1e-05 1 CL0020
Cotton_A_36956_CDS 289 312 287 313 PF01535.20 PPR Family 4 27 31 13.7 0.056 1 CL0020
Cotton_A_36956_CDS 315 361 314 363 PF13041.6 PPR_2 Repeat 2 48 50 38.5 1e-09 1 CL0020
Cotton_A_36956_CDS 486 503 483 507 PF01535.20 PPR Family 4 21 31 9.6 1.2 1 CL0020
Cotton_A_36956_CDS 544 591 543 592 PF13041.6 PPR_2 Repeat 2 49 50 41.4 1.2e-10 1 CL0020
Cotton_A_36956_CDS 618 646 617 647 PF01535.20 PPR Family 2 30 31 20.4 0.00043 1 CL0020
Cotton_A_36956_CDS 648 678 648 678 PF01535.20 PPR Family 1 31 31 29.9 3.7e-07 1 CL0020
Cotton_A_39041_CDS 32 126 31 128 PF01657.17 Stress-antifung Family 2 93 95 63.8 1.8e-17 1 No_clan
Cotton_A_39041_CDS 141 240 140 241 PF01657.17 Stress-antifung Family 2 94 95 53.0 3.9e-14 1 No_clan
Cotton_A_39041_CDS 342 602 338 608 PF07714.17 Pkinase_Tyr Domain 5 253 259 159.9 6.7e-47 1 CL0016
Cotton_A_01747_CDS 8 30 8 30 PF10584.9 Proteasome_A_N Domain 1 23 23 50.2 1.4e-13 1 CL0052
Cotton_A_01747_CDS 32 216 31 216 PF00227.26 Proteasome Domain 2 190 190 176.4 4.4e-52 1 CL0052
Cotton_A_16603_CDS 152 178 150 179 PF04438.16 zf-HIT Domain 3 29 30 28.8 8.3e-07 1 CL0175
Cotton_A_38019_CDS 50 254 50 254 PF04720.12 PDDEXK_6 Family 1 221 221 231.0 1.6e-68 1 No_clan
Cotton_A_20471_CDS 133 371 132 371 PF12146.8 Hydrolase_4 Family 2 239 239 239.5 2.9e-71 1 CL0028
Cotton_A_01093_CDS 77 554 70 556 PF02696.14 UPF0061 Family 17 466 468 445.3 2.5e-133 1 No_clan
Cotton_A_30034_CDS 32 146 31 147 PF07732.15 Cu-oxidase_3 Domain 2 118 119 136.8 3.2e-40 1 CL0026
Cotton_A_30034_CDS 158 309 157 309 PF00394.22 Cu-oxidase Domain 2 159 159 138.1 2.7e-40 1 CL0026
Cotton_A_30034_CDS 417 552 416 554 PF07731.14 Cu-oxidase_2 Domain 2 135 137 131.4 1.8e-38 1 CL0026
Cotton_A_40846_CDS 244 451 243 454 PF00924.18 MS_channel Family 2 203 206 98.1 5e-28 1 No_clan
Cotton_A_01492_CDS 7 82 7 101 PF13472.6 Lipase_GDSL_2 Domain 1 80 179 39.7 6.6e-10 1 CL0264
Cotton_A_12045_CDS 4 133 4 134 PF04099.12 Sybindin Family 1 142 143 180.8 1.2e-53 1 CL0212
Cotton_A_22479_CDS 74 439 47 444 PF00067.22 p450 Domain 89 458 463 284.5 1.4e-84 1 No_clan
Cotton_A_20234_CDS 41 118 40 118 PF10260.9 SAYSvFN Domain 2 70 70 68.2 4.2e-19 1 No_clan
Cotton_A_16943_CDS 5 69 5 70 PF01423.22 LSM Domain 1 66 67 64.7 4.5e-18 1 CL0527
Cotton_A_33484_CDS 188 221 181 221 PF00400.32 WD40 Repeat 10 38 38 16.1 0.015 1 CL0186
Cotton_A_35910_CDS 7 474 7 490 PF05097.12 DUF688 Family 1 430 446 373.4 1.9e-111 1 No_clan
Cotton_A_24082_CDS 11 56 10 57 PF00319.18 SRF-TF Domain 2 47 48 58.1 4.3e-16 1 No_clan
Cotton_A_10637_CDS 114 174 113 174 PF04117.12 Mpv17_PMP22 Family 2 62 62 60.5 1.4e-16 1 No_clan
Cotton_A_02689_CDS 18 257 18 258 PF13561.6 adh_short_C2 Domain 1 233 234 213.7 2.6e-63 1 CL0063
Cotton_A_05986_CDS 31 476 31 487 PF00067.22 p450 Domain 1 445 463 221.1 2.4e-65 1 No_clan
Cotton_A_21977_CDS 2 110 1 121 PF04051.16 TRAPP Family 45 132 146 112.2 1.7e-32 1 CL0210
Cotton_A_29072_CDS 7 208 6 208 PF05997.12 Nop52 Family 2 216 216 188.5 1.3e-55 1 No_clan
Cotton_A_04645_CDS 94 151 94 151 PF04844.13 Ovate Family 1 58 58 74.4 5.3e-21 1 No_clan
Cotton_A_21942_CDS 57 82 56 82 PF00642.24 zf-CCCH Family 2 27 27 31.9 8.6e-08 1 CL0537
Cotton_A_21942_CDS 103 127 102 127 PF00642.24 zf-CCCH Family 3 27 27 38.6 7.1e-10 1 CL0537
Cotton_A_21942_CDS 149 173 147 173 PF00642.24 zf-CCCH Family 3 27 27 37.7 1.4e-09 1 CL0537
Cotton_A_21942_CDS 309 334 308 334 PF00642.24 zf-CCCH Family 2 27 27 36.3 3.6e-09 1 CL0537
Cotton_A_21942_CDS 355 380 354 380 PF00642.24 zf-CCCH Family 2 27 27 40.4 1.9e-10 1 CL0537
Cotton_A_27723_CDS 11 169 11 171 PF00071.22 Ras Domain 1 159 162 193.3 2e-57 1 CL0023
Cotton_A_02620_CDS 411 705 410 705 PF00069.25 Pkinase Domain 2 264 264 189.0 1e-55 1 CL0016
Cotton_A_17127_CDS 62 140 30 144 PF02519.14 Auxin_inducible Family 17 86 90 72.6 2.2e-20 1 No_clan
Cotton_A_13978_CDS 1 97 1 97 PF03242.13 LEA_3 Family 1 93 93 108.0 3e-31 1 No_clan
Cotton_A_16798_CDS 11 51 10 55 PF00319.18 SRF-TF Domain 2 42 48 50.2 1.3e-13 1 No_clan
Cotton_A_33606_CDS 38 71 37 75 PF08240.12 ADH_N Domain 2 36 109 25.2 1.1e-05 1 CL0296
Cotton_A_16231_CDS 134 225 132 227 PF01248.26 Ribosomal_L7Ae Domain 3 93 95 88.0 2.5e-25 1 CL0101
Cotton_A_18955_CDS 114 340 112 352 PF01008.17 IF-2B Family 3 228 282 174.5 2.5e-51 1 CL0246
Cotton_A_08067_CDS 2 79 1 81 PF00651.31 BTB Domain 33 109 111 21.3 0.00024 1 CL0033
Cotton_A_08067_CDS 165 251 163 251 PF02135.16 zf-TAZ Family 3 75 75 38.6 1.1e-09 1 No_clan
Cotton_A_33672_CDS 20 95 20 121 PF01734.22 Patatin Family 1 66 204 40.1 4.2e-10 1 CL0323
Cotton_A_04350_CDS 14 95 3 96 PF16884.5 ADH_N_2 Family 29 107 108 60.2 1.5e-16 1 CL0296
Cotton_A_04350_CDS 141 274 141 276 PF00107.26 ADH_zinc_N Family 1 128 130 85.3 3.3e-24 1 CL0063
Cotton_A_24357_CDS 5 216 3 253 PF00069.25 Pkinase Domain 3 211 264 155.8 1.3e-45 1 CL0016
Cotton_A_02699_CDS 44 138 34 142 PF13616.6 Rotamase_3 Domain 16 112 116 67.6 1.3e-18 1 CL0487
Cotton_A_15104_CDS 111 188 108 188 PF14389.6 Lzipper-MIP1 Family 5 84 84 79.6 1.6e-22 1 No_clan
Cotton_A_15104_CDS 435 567 433 567 PF04784.14 DUF547 Family 3 123 123 132.8 6.2e-39 1 No_clan
Cotton_A_01217_CDS 245 301 245 301 PF06886.11 TPX2 Family 1 57 57 75.4 2.9e-21 1 No_clan
Cotton_A_40219_CDS 2 28 1 28 PF16135.5 Jas Family 50 76 76 36.7 3.4e-09 1 No_clan
Cotton_A_40219_CDS 69 98 68 103 PF00628.29 PHD Domain 2 35 52 29.5 5e-07 1 CL0390
Cotton_A_30304_CDS 35 188 34 189 PF03162.13 Y_phosphatase2 Domain 2 152 165 131.6 1.9e-38 1 CL0031
Cotton_A_32919_CDS 213 357 208 376 PF13386.6 DsbD_2 Family 52 190 199 34.3 2.2e-08 1 CL0292
Cotton_A_35262_CDS 39 374 38 378 PF11744.8 ALMT Family 2 345 469 489.7 8.9e-147 1 CL0307
Cotton_A_17344_CDS 72 340 72 342 PF00069.25 Pkinase Domain 1 260 264 177.6 3.1e-52 1 CL0016
Cotton_A_30268_CDS 76 101 75 103 PF01535.20 PPR Family 2 27 31 15.0 0.022 1 CL0020
Cotton_A_30268_CDS 148 171 148 175 PF01535.20 PPR Family 4 27 31 24.8 1.6e-05 1 CL0020
Cotton_A_30268_CDS 176 205 176 206 PF01535.20 PPR Family 1 30 31 23.3 4.8e-05 1 CL0020
Cotton_A_30268_CDS 211 239 211 239 PF01535.20 PPR Family 1 29 31 18.8 0.0014 1 CL0020
Cotton_A_30268_CDS 248 273 247 275 PF01535.20 PPR Family 2 27 31 20.1 0.0005 1 CL0020
Cotton_A_38389_CDS 1 110 1 114 PF08284.11 RVP_2 Domain 21 130 136 98.6 2.4e-28 1 CL0129
Cotton_A_38389_CDS 115 274 115 275 PF00078.27 RVT_1 Family 1 221 222 99.7 1.7e-28 1 CL0027
Cotton_A_38389_CDS 365 462 363 462 PF17917.1 RT_RNaseH Domain 3 105 105 113.0 7.3e-33 1 CL0219
Cotton_A_38389_CDS 498 543 497 543 PF17921.1 Integrase_H2C2 Domain 9 52 58 45.7 5.1e-12 1 CL0361
Cotton_A_31939_CDS 6 133 3 141 PF03358.15 FMN_red Domain 17 145 155 49.1 4.8e-13 1 CL0042
Cotton_A_27915_CDS 12 116 2 116 PF07714.17 Pkinase_Tyr Domain 162 259 259 33.8 2.1e-08 1 CL0016
Cotton_A_17123_CDS 115 334 71 386 PF00923.19 TAL_FSA Domain 39 239 287 165.7 1.4e-48 1 CL0036
Cotton_A_07231_CDS 33 96 25 104 PF00704.28 Glyco_hydro_18 Domain 9 70 312 32.2 9e-08 1 CL0058
Cotton_A_07231_CDS 102 262 97 262 PF00704.28 Glyco_hydro_18 Domain 139 312 312 125.3 4.2e-36 1 CL0058
Cotton_A_31086_CDS 525 566 523 566 PF13639.6 zf-RING_2 Domain 3 44 44 46.0 4.9e-12 1 CL0229
Cotton_A_23959_CDS 33 139 32 139 PF00085.20 Thioredoxin Domain 2 103 103 104.2 3.1e-30 1 CL0172
Cotton_A_23959_CDS 169 354 169 355 PF13848.6 Thioredoxin_6 Domain 1 184 184 79.8 2.4e-22 1 CL0172
Cotton_A_23959_CDS 377 480 376 480 PF00085.20 Thioredoxin Domain 2 103 103 90.2 7.1e-26 1 CL0172
Cotton_A_08738_CDS 10 149 7 179 PF05833.11 FbpA Family 4 145 455 60.2 1.5e-16 1 CL0303
Cotton_A_08738_CDS 231 531 220 562 PF05833.11 FbpA Family 180 411 455 49.8 2.2e-13 1 CL0303
Cotton_A_08738_CDS 568 679 568 679 PF05670.13 NFACT-R_1 Domain 1 109 109 109.4 1.3e-31 1 CL0684
Cotton_A_08738_CDS 948 964 947 964 PF00098.23 zf-CCHC Domain 2 18 18 28.5 1.1e-06 1 CL0511
Cotton_A_08738_CDS 1010 1099 1007 1100 PF11923.8 NFACT-C Domain 4 105 106 96.1 1e-27 1 No_clan
Cotton_A_27783_CDS 34 211 34 211 PF00197.18 Kunitz_legume Domain 1 175 175 145.7 1.3e-42 1 CL0066
Cotton_A_20369_CDS 9 475 8 476 PF03094.15 Mlo Family 2 478 479 723.1 1.1e-217 1 No_clan
Cotton_A_02188_CDS 3 415 3 415 PF00656.22 Peptidase_C14 Domain 1 248 248 265.5 6.1e-79 1 CL0093
Cotton_A_34166_CDS 134 294 133 295 PF03031.18 NIF Family 2 155 156 171.2 1.3e-50 1 CL0137
Cotton_A_39066_CDS 22 82 21 82 PF00046.29 Homeodomain Domain 2 57 57 48.2 7.2e-13 1 CL0123
Cotton_A_02639_CDS 17 287 17 287 PF01370.21 Epimerase Family 1 241 241 203.5 3.4e-60 1 CL0063
Cotton_A_34842_CDS 21 446 20 447 PF00450.22 Peptidase_S10 Domain 2 418 419 453.9 7e-136 1 CL0028
Cotton_A_01502_CDS 9 187 1 188 PF16913.5 PUNUT Family 61 239 322 226.4 4.9e-67 1 CL0184
Cotton_A_00316_CDS 152 219 151 219 PF16040.5 DUF4792 Family 2 71 71 80.1 8.4e-23 1 No_clan
Cotton_A_00316_CDS 243 349 243 350 PF16041.5 DUF4793 Family 1 107 108 108.2 2.2e-31 1 No_clan
Cotton_A_00316_CDS 427 475 426 475 PF13920.6 zf-C3HC4_3 Domain 2 50 50 50.5 1.3e-13 1 CL0229
Cotton_A_07267_CDS 244 303 243 303 PF13855.6 LRR_8 Repeat 2 61 61 39.1 4.7e-10 1 CL0022
Cotton_A_07267_CDS 378 563 377 563 PF11721.8 Malectin Domain 2 165 165 143.9 4.5e-42 1 CL0202
Cotton_A_29105_CDS 38 146 37 147 PF06881.11 Elongin_A Family 2 104 105 86.0 2.2e-24 1 CL0271
Cotton_A_33384_CDS 50 82 19 82 PF00804.25 Syntaxin Domain 168 200 200 27.9 1.7e-06 1 CL0445
Cotton_A_33384_CDS 83 121 83 123 PF05739.19 SNARE Family 1 39 53 34.0 2.1e-08 1 No_clan
Cotton_A_06356_CDS 73 611 71 612 PF03055.15 RPE65 Family 3 462 463 313.0 4.5e-93 1 No_clan
Cotton_A_19245_CDS 106 126 106 126 PF00612.27 IQ Motif 1 21 21 28.6 6.7e-07 1 CL0220
Cotton_A_19245_CDS 132 147 129 148 PF00612.27 IQ Motif 5 20 21 12.5 0.1 1 CL0220
Cotton_A_19245_CDS 338 365 301 415 PF13178.6 DUF4005 Family 15 42 93 28.7 1.5e-06 1 No_clan
Cotton_A_03078_CDS 59 178 57 178 PF09296.11 NUDIX-like Domain 4 102 102 44.3 2.2e-11 1 CL0261
Cotton_A_03078_CDS 182 213 180 213 PF09297.11 zf-NADH-PPase Domain 3 32 32 33.7 2e-08 1 CL0167
Cotton_A_03078_CDS 219 335 216 342 PF00293.28 NUDIX Domain 5 123 131 63.3 2.2e-17 1 CL0261
Cotton_A_13732_CDS 43 178 42 179 PF05903.14 Peptidase_C97 Domain 2 150 151 154.2 2.2e-45 1 CL0125
Cotton_A_18695_CDS 60 129 59 133 PF05899.12 Cupin_3 Domain 2 70 74 70.8 5.7e-20 1 CL0029
Cotton_A_18810_CDS 29 236 28 237 PF01738.18 DLH Domain 2 216 217 94.7 5.6e-27 1 CL0028
Cotton_A_17205_CDS 25 153 24 161 PF00139.19 Lectin_legB Domain 2 124 249 102.9 2e-29 1 CL0004
Cotton_A_02663_CDS 35 216 35 216 PF08547.12 CIA30 Family 1 160 160 153.7 4e-45 1 CL0202
Cotton_A_30147_CDS 46 83 44 84 PF18511.1 F-box_5 Domain 3 41 42 32.2 5.9e-08 1 CL0271
Cotton_A_30147_CDS 133 156 132 156 PF13516.6 LRR_6 Repeat 2 24 24 19.5 0.00065 1 CL0022
Cotton_A_14650_CDS 128 162 128 163 PF00320.27 GATA Domain 1 35 36 64.2 5.9e-18 1 CL0167
Cotton_A_23914_CDS 94 189 82 195 PF00025.21 Arf Domain 19 114 175 126.9 5.4e-37 1 CL0023
Cotton_A_23914_CDS 187 331 179 331 PF00069.25 Pkinase Domain 113 264 264 146.0 1.3e-42 1 CL0016
Cotton_A_23914_CDS 378 438 376 440 PF13499.6 EF-hand_7 Domain 3 69 71 38.0 1.6e-09 1 CL0220
Cotton_A_23914_CDS 449 512 448 513 PF13499.6 EF-hand_7 Domain 2 70 71 52.2 6.2e-14 1 CL0220
Cotton_A_37127_CDS 17 90 16 91 PF12701.7 LSM14 Domain 2 74 75 110.7 2.7e-32 1 CL0527
Cotton_A_37127_CDS 462 561 461 563 PF09532.10 FDF Domain 2 102 104 68.9 5.7e-19 1 No_clan
Cotton_A_06237_CDS 2 54 2 61 PF05129.13 Elf1 Domain 1 53 78 53.6 1.7e-14 1 CL0167
Cotton_A_26863_CDS 31 137 30 138 PF13947.6 GUB_WAK_bind Domain 2 105 106 65.9 4.5e-18 1 No_clan
Cotton_A_26530_CDS 147 397 142 399 PF00069.25 Pkinase Domain 6 260 264 115.4 2.8e-33 1 CL0016
Cotton_A_05220_CDS 11 82 11 85 PF12265.8 CAF1C_H4-bd Family 1 64 67 37.6 2e-09 1 No_clan
Cotton_A_05220_CDS 165 199 160 199 PF00400.32 WD40 Repeat 6 38 38 15.7 0.02 1 CL0186
Cotton_A_05220_CDS 248 282 244 282 PF00400.32 WD40 Repeat 6 38 38 13.1 0.14 1 CL0186
Cotton_A_05220_CDS 295 327 290 327 PF00400.32 WD40 Repeat 8 38 38 16.6 0.011 1 CL0186
Cotton_A_05220_CDS 334 373 334 373 PF00400.32 WD40 Repeat 1 38 38 28.2 2.3e-06 1 CL0186
Cotton_A_22364_CDS 43 67 35 67 PF03765.15 CRAL_TRIO_N Domain 30 54 54 28.7 1.1e-06 1 CL0214
Cotton_A_22364_CDS 87 239 86 240 PF00650.20 CRAL_TRIO Domain 2 158 159 106.1 1.4e-30 1 CL0512
Cotton_A_34103_CDS 147 570 145 570 PF06963.12 FPN1 Family 3 435 435 392.4 2.1e-117 1 CL0015
Cotton_A_04395_CDS 1 114 1 114 PF08662.11 eIF2A Family 81 194 194 148.5 2e-43 1 CL0186
Cotton_A_22395_CDS 106 157 106 157 PF00010.26 HLH Domain 1 53 53 36.7 3e-09 1 No_clan
Cotton_A_23714_CDS 335 495 334 495 PF13768.6 VWA_3 Domain 2 155 155 72.3 4.1e-20 1 CL0128
Cotton_A_16279_CDS 4 72 4 72 PF00226.31 DnaJ Domain 1 63 63 83.1 1.1e-23 1 CL0392
Cotton_A_16279_CDS 166 324 166 324 PF01556.18 DnaJ_C Domain 1 148 148 144.7 2.1e-42 1 No_clan
Cotton_A_14298_CDS 247 400 246 400 PF02182.17 SAD_SRA Domain 2 157 157 167.8 1.4e-49 1 CL0178
Cotton_A_14298_CDS 429 527 428 527 PF05033.16 Pre-SET Family 2 109 109 77.7 9.7e-22 1 No_clan
Cotton_A_14298_CDS 546 671 546 671 PF00856.28 SET Family 1 169 169 70.8 1.8e-19 1 No_clan
Cotton_A_11341_CDS 58 84 58 85 PF05678.14 VQ Motif 1 27 28 42.4 3.3e-11 1 No_clan
Cotton_A_07229_CDS 37 362 35 362 PF00704.28 Glyco_hydro_18 Domain 3 312 312 241.2 2.1e-71 1 CL0058
Cotton_A_07229_CDS 398 410 396 411 PF00832.20 Ribosomal_L39 Family 29 41 42 22.1 8.5e-05 1 No_clan
Cotton_A_23149_CDS 47 455 39 471 PF12222.8 PNGaseA Family 11 417 434 355.7 3.4e-106 1 No_clan
Cotton_A_23961_CDS 22 47 5 48 PF14392.6 zf-CCHC_4 Domain 23 48 49 28.0 1.3e-06 1 CL0511
Cotton_A_03858_CDS 76 137 75 141 PF00635.26 Motile_Sperm Domain 2 63 109 65.7 2.9e-18 1 CL0556
Cotton_A_00291_CDS 2 69 2 71 PF01187.18 MIF Domain 1 67 114 41.4 1.5e-10 1 CL0082
Cotton_A_32820_CDS 35 496 35 503 PF00067.22 p450 Domain 1 456 463 354.0 1.1e-105 1 No_clan
Cotton_A_13025_CDS 23 375 21 377 PF03283.13 PAE Family 3 353 355 533.6 2.2e-160 1 CL0028
Cotton_A_09125_CDS 47 128 46 128 PF14547.6 Hydrophob_seed Domain 2 84 85 93.5 6.9e-27 1 CL0482
Cotton_A_36798_CDS 55 383 55 394 PF00295.17 Glyco_hydro_28 Domain 1 321 325 334.5 5.7e-100 1 CL0268
Cotton_A_04103_CDS 116 189 115 211 PF14299.6 PP2 Family 2 77 146 77.8 8.6e-22 1 No_clan
Cotton_A_12898_CDS 14 174 14 175 PF00071.22 Ras Domain 1 161 162 203.7 1.3e-60 1 CL0023
Cotton_A_12898_CDS 217 264 217 264 PF16891.5 STPPase_N Family 1 48 48 70.8 9.2e-20 1 No_clan
Cotton_A_12898_CDS 266 457 265 460 PF00149.28 Metallophos Domain 2 201 204 129.1 3.1e-37 1 CL0163
Cotton_A_20367_CDS 390 518 390 519 PF00004.29 AAA Domain 1 131 132 137.8 2.9e-40 1 CL0023
Cotton_A_20367_CDS 541 583 541 584 PF17862.1 AAA_lid_3 Domain 1 43 45 32.2 7e-08 1 CL0671
Cotton_A_20367_CDS 600 775 599 775 PF01434.18 Peptidase_M41 Domain 2 191 191 200.4 2.4e-59 1 CL0126
Cotton_A_25416_CDS 38 233 37 234 PF01507.19 PAPS_reduct Family 2 173 174 66.8 2.3e-18 1 CL0039
Cotton_A_25416_CDS 299 396 298 453 PF00994.24 MoCF_biosynth Domain 2 99 144 62.1 4.5e-17 1 No_clan
Cotton_A_09979_CDS 117 275 116 275 PF14299.6 PP2 Family 2 146 146 133.9 4.1e-39 1 No_clan
Cotton_A_25009_CDS 3 70 1 70 PF00237.19 Ribosomal_L22 Domain 37 103 103 61.1 9.4e-17 1 No_clan
Cotton_A_32504_CDS 49 259 26 262 PF13360.6 PQQ_2 Domain 32 234 237 44.7 1.2e-11 1 CL0186
Cotton_A_32504_CDS 766 983 766 983 PF07774.13 EMC1_C Domain 1 213 213 225.5 5.8e-67 1 No_clan
Cotton_A_01160_CDS 23 103 22 111 PF00481.21 PP2C Family 2 89 258 40.9 1.8e-10 1 CL0238
Cotton_A_01160_CDS 156 322 136 324 PF00481.21 PP2C Family 97 255 258 192.7 8.9e-57 1 CL0238
Cotton_A_02415_CDS 48 299 44 299 PF05096.12 Glu_cyclase_2 Family 5 251 251 302.7 1.8e-90 1 CL0186
Cotton_A_08669_CDS 149 195 147 195 PF00010.26 HLH Domain 4 53 53 51.9 5.3e-14 1 No_clan
Cotton_A_15575_CDS 74 174 73 175 PF01453.24 B_lectin Domain 2 104 105 127.6 2.5e-37 1 No_clan
Cotton_A_15575_CDS 207 315 207 316 PF00954.20 S_locus_glycop Domain 1 110 111 94.1 7.4e-27 1 No_clan
Cotton_A_15575_CDS 337 403 337 403 PF08276.11 PAN_2 Domain 1 67 67 78.3 3.4e-22 1 CL0168
Cotton_A_15575_CDS 505 771 504 775 PF07714.17 Pkinase_Tyr Domain 2 255 259 163.2 6.9e-48 1 CL0016
Cotton_A_25496_CDS 24 57 23 57 PF14369.6 zinc_ribbon_9 Domain 2 35 35 48.8 5.9e-13 1 CL0167
Cotton_A_25496_CDS 185 227 184 227 PF13639.6 zf-RING_2 Domain 2 44 44 46.7 2.9e-12 1 CL0229
Cotton_A_14151_CDS 13 35 13 35 PF00560.33 LRR_1 Repeat 1 23 23 16.6 0.0077 1 CL0022
Cotton_A_14213_CDS 167 384 163 393 PF00931.22 NB-ARC Domain 5 231 252 160.1 5.4e-47 1 CL0023
Cotton_A_18750_CDS 18 135 17 192 PF17683.1 TFIIF_beta_N Family 2 104 135 37.2 4.1e-09 1 CL0662
Cotton_A_18750_CDS 190 253 189 253 PF02270.15 TFIIF_beta Domain 2 65 65 73.1 1.4e-20 1 CL0123
Cotton_A_17183_CDS 5 70 3 70 PF00223.19 PsaA_PsaB Family 653 718 718 97.2 7.5e-28 1 No_clan
Cotton_A_25141_CDS 4 54 1 67 PF02996.17 Prefoldin Coiled-coil 44 94 120 35.7 6.5e-09 1 CL0200
Cotton_A_09539_CDS 108 365 105 366 PF00348.17 polyprenyl_synt Domain 4 255 256 226.7 2.4e-67 1 CL0613
Cotton_A_20517_CDS 57 382 57 389 PF00295.17 Glyco_hydro_28 Domain 1 321 325 290.0 2e-86 1 CL0268
Cotton_A_18454_CDS 5 96 5 96 PF13771.6 zf-HC5HC2H Domain 1 90 90 74.9 4.4e-21 1 CL0390
Cotton_A_18454_CDS 714 747 713 747 PF13831.6 PHD_2 Family 2 36 36 39.6 2.8e-10 1 CL0390
Cotton_A_18454_CDS 771 877 770 877 PF13832.6 zf-HC5HC2H_2 Domain 2 110 110 79.9 1.4e-22 1 CL0390
Cotton_A_20276_CDS 162 237 160 237 PF00533.26 BRCT Family 3 79 79 56.8 2.2e-15 1 CL0459
Cotton_A_20276_CDS 355 443 355 478 PF00004.29 AAA Domain 1 74 132 41.6 1.5e-10 1 CL0023
Cotton_A_20276_CDS 628 790 628 791 PF08519.12 RFC1 Domain 1 156 157 159.9 5.4e-47 1 No_clan
Cotton_A_01749_CDS 300 400 299 403 PF01399.27 PCI Domain 2 102 105 90.6 7.8e-26 1 CL0123
Cotton_A_31678_CDS 40 179 38 182 PF02590.17 SPOUT_MTase Family 3 142 154 122.0 2.1e-35 1 CL0098
Cotton_A_03675_CDS 16 137 9 139 PF12047.8 DNMT1-RFD Domain 9 142 144 34.9 1.4e-08 1 No_clan
Cotton_A_29627_CDS 125 223 124 235 PF00989.25 PAS Domain 2 101 113 34.1 2.3e-08 1 CL0183
Cotton_A_29627_CDS 500 751 500 751 PF07714.17 Pkinase_Tyr Domain 1 259 259 220.2 2.8e-65 1 CL0016
Cotton_A_03808_CDS 145 184 144 184 PF13639.6 zf-RING_2 Domain 2 44 44 38.1 1.5e-09 1 CL0229
Cotton_A_26448_CDS 23 130 23 130 PF01453.24 B_lectin Domain 1 105 105 96.7 1.1e-27 1 No_clan
Cotton_A_10586_CDS 60 127 60 127 PF00550.25 PP-binding Domain 1 67 67 41.7 1.1e-10 1 CL0314
Cotton_A_03361_CDS 1 214 1 215 PF07279.11 DUF1442 Family 1 217 218 333.1 5.5e-100 1 CL0063
Cotton_A_09582_CDS 134 153 133 158 PF13912.6 zf-C2H2_6 Domain 2 21 27 22.1 0.00011 1 CL0361
Cotton_A_29841_CDS 79 348 78 358 PF00069.25 Pkinase Domain 2 258 264 169.4 9.6e-50 1 CL0016
Cotton_A_09498_CDS 178 584 162 585 PF01425.21 Amidase Family 22 450 451 295.5 7.4e-88 1 No_clan
Cotton_A_28788_CDS 22 364 22 364 PF00657.22 Lipase_GDSL Family 1 200 200 46.9 3e-12 1 CL0264
Cotton_A_12811_CDS 32 407 32 407 PF00282.19 Pyridoxal_deC Domain 1 375 375 367.2 7.3e-110 1 CL0061
Cotton_A_30920_CDS 280 372 265 382 PF01553.21 Acyltransferase Family 13 119 135 23.7 3e-05 1 CL0228
Cotton_A_28055_CDS 15 169 15 170 PF03398.14 Ist1 Family 1 163 164 152.9 7e-45 1 No_clan
Cotton_A_31139_CDS 159 265 126 265 PF02544.16 Steroid_dh Family 45 150 150 86.9 1.3e-24 1 CL0115
Cotton_A_11102_CDS 17 94 17 94 PF03386.14 ENOD93 Family 1 78 78 131.3 8.3e-39 1 No_clan
Cotton_A_03073_CDS 67 230 29 232 PF01126.20 Heme_oxygenase Domain 35 203 205 51.3 1.2e-13 1 CL0230
Cotton_A_08316_CDS 134 235 125 246 PF09335.11 SNARE_assoc Family 25 109 120 36.6 5.5e-09 1 No_clan
Cotton_A_05634_CDS 8 40 8 42 PF12165.8 Alfin Family 1 33 127 41.3 1e-10 1 No_clan
Cotton_A_05634_CDS 41 71 40 74 PF12165.8 Alfin Family 50 80 127 39.3 4.6e-10 1 No_clan
Cotton_A_05634_CDS 143 190 142 192 PF00628.29 PHD Domain 2 50 52 39.3 4.2e-10 1 CL0390
Cotton_A_06582_CDS 34 127 31 127 PF02678.16 Pirin Family 4 108 108 107.9 2.4e-31 1 CL0029
Cotton_A_06582_CDS 180 284 180 285 PF05726.13 Pirin_C Domain 1 103 104 111.2 2.7e-32 1 CL0029
Cotton_A_27994_CDS 199 615 198 615 PF06602.14 Myotub-related Domain 2 352 352 424.5 2.7e-127 1 CL0031
Cotton_A_13820_CDS 2 115 1 116 PF07732.15 Cu-oxidase_3 Domain 3 118 119 148.3 9.2e-44 1 CL0026
Cotton_A_13820_CDS 127 277 126 278 PF00394.22 Cu-oxidase Domain 2 158 159 134.8 2.8e-39 1 CL0026
Cotton_A_13820_CDS 388 520 387 522 PF07731.14 Cu-oxidase_2 Domain 2 135 137 140.2 3.4e-41 1 CL0026
Cotton_A_37116_CDS 22 99 3 100 PF01775.17 Ribosomal_L18A Domain 43 120 121 74.9 5.3e-21 1 No_clan
Cotton_A_22453_CDS 124 321 124 324 PF03441.14 FAD_binding_7 Domain 1 199 202 212.9 3.2e-63 1 No_clan
Cotton_A_23488_CDS 5 269 4 269 PF01459.22 Porin_3 Family 2 270 270 190.8 3.1e-56 1 CL0193
Cotton_A_14026_CDS 274 430 273 430 PF13359.6 DDE_Tnp_4 Domain 2 158 158 124.9 2.2e-36 1 CL0219
Cotton_A_12011_CDS 102 260 88 262 PF02535.22 Zip Family 157 330 333 73.1 2.3e-20 1 CL0184
Cotton_A_11920_CDS 8 289 8 289 PF03372.23 Exo_endo_phos Domain 1 233 233 26.5 4.1e-06 1 CL0530
Cotton_A_06232_CDS 163 680 161 680 PF00330.20 Aconitase Family 1 461 461 597.6 1.8e-179 1 No_clan
Cotton_A_06232_CDS 809 936 808 938 PF00694.19 Aconitase_C Domain 2 129 131 149.0 9.1e-44 1 CL0364
Cotton_A_31511_CDS 36 131 36 133 PF14363.6 AAA_assoc Family 1 94 96 42.8 5e-11 1 No_clan
Cotton_A_31511_CDS 244 381 243 383 PF00004.29 AAA Domain 2 130 132 68.0 1.1e-18 1 CL0023
Cotton_A_04139_CDS 30 108 29 108 PF05922.16 Inhibitor_I9 Domain 2 82 82 46.1 6e-12 1 CL0570
Cotton_A_04139_CDS 133 584 133 608 PF00082.22 Peptidase_S8 Domain 1 287 298 144.2 4.8e-42 1 No_clan
Cotton_A_04139_CDS 666 763 666 763 PF17766.1 fn3_6 Domain 1 99 99 81.6 3.6e-23 1 CL0159
Cotton_A_31190_CDS 1 84 1 84 PF00931.22 NB-ARC Domain 28 112 252 61.6 6.5e-17 1 CL0023
Cotton_A_31499_CDS 37 213 37 213 PF00350.23 Dynamin_N Domain 1 168 168 184.4 1.6e-54 1 CL0023
Cotton_A_31499_CDS 222 488 222 496 PF01031.20 Dynamin_M Family 1 270 285 214.4 1.8e-63 1 No_clan
Cotton_A_31499_CDS 515 606 513 606 PF02212.18 GED Family 3 92 92 74.1 7.3e-21 1 No_clan
Cotton_A_31499_CDS 800 838 761 851 PF01764.25 Lipase_3 Family 53 91 142 23.3 4.6e-05 1 CL0028
Cotton_A_33377_CDS 83 137 83 137 PF01165.20 Ribosomal_S21 Family 1 55 55 62.9 1.7e-17 1 No_clan
Cotton_A_12182_CDS 293 558 291 560 PF00069.25 Pkinase Domain 4 260 264 162.9 9.4e-48 1 CL0016
Cotton_A_13526_CDS 283 411 264 441 PF00201.18 UDPGT Family 269 385 499 88.9 3.3e-25 1 CL0113
Cotton_A_32887_CDS 41 397 41 397 PF07168.11 Ureide_permease Family 1 360 360 649.1 1.4e-195 1 CL0184
Cotton_A_32345_CDS 116 252 116 257 PF10602.9 RPN7 Family 1 138 174 128.4 2.2e-37 1 CL0020
Cotton_A_34851_CDS 23 56 21 56 PF14369.6 zinc_ribbon_9 Domain 3 35 35 45.4 7e-12 1 CL0167
Cotton_A_34851_CDS 222 265 222 265 PF13639.6 zf-RING_2 Domain 1 44 44 49.6 3.7e-13 1 CL0229
Cotton_A_21331_CDS 26 125 24 125 PF08216.11 CTNNBL Domain 3 104 104 118.9 9.4e-35 1 No_clan
Cotton_A_07569_CDS 1 79 1 79 PF01277.17 Oleosin Family 35 113 113 96.7 6.6e-28 1 No_clan
Cotton_A_06475_CDS 45 438 45 439 PF01490.18 Aa_trans Family 1 408 409 271.6 9.6e-81 1 CL0062
Cotton_A_13851_CDS 38 146 12 175 PF10457.9 MENTAL Domain 35 133 178 21.6 0.00015 1 No_clan
Cotton_A_37496_CDS 35 488 35 488 PF00759.19 Glyco_hydro_9 Domain 1 411 411 453.8 7.4e-136 1 CL0059
Cotton_A_05941_CDS 12 90 12 90 PF05008.15 V-SNARE Family 1 79 79 80.4 9.5e-23 1 CL0147
Cotton_A_05941_CDS 128 193 128 193 PF12352.8 V-SNARE_C Domain 1 66 66 85.2 2.7e-24 1 CL0147
Cotton_A_26791_CDS 36 86 35 86 PF08100.11 Dimerisation Domain 2 51 51 57.0 1.5e-15 1 CL0123
Cotton_A_26791_CDS 137 341 137 341 PF00891.18 Methyltransf_2 Domain 1 210 210 211.5 8e-63 1 CL0063
Cotton_A_35288_CDS 83 121 83 125 PF00920.21 ILVD_EDD Family 1 39 517 28.4 6.3e-07 1 No_clan
Cotton_A_28014_CDS 2 297 1 297 PF01094.28 ANF_receptor Family 62 354 354 197.9 2.5e-58 1 CL0144
Cotton_A_04138_CDS 18 360 16 362 PF00224.21 PK Family 3 346 348 509.9 2.8e-153 1 CL0151
Cotton_A_04138_CDS 377 502 377 504 PF02887.16 PK_C Domain 1 115 117 80.7 9.4e-23 1 No_clan
Cotton_A_24688_CDS 26 732 23 737 PF00012.20 HSP70 Family 4 594 599 325.7 4.4e-97 1 CL0108
Cotton_A_19584_CDS 45 72 45 72 PF01535.20 PPR Family 4 31 31 12.9 0.1 1 CL0020
Cotton_A_19584_CDS 73 101 73 102 PF01535.20 PPR Family 1 29 31 25.9 7.2e-06 1 CL0020
Cotton_A_19584_CDS 104 133 104 134 PF01535.20 PPR Family 1 30 31 24.5 2.1e-05 1 CL0020
Cotton_A_19584_CDS 139 159 135 164 PF01535.20 PPR Family 5 25 31 19.5 0.00079 1 CL0020
Cotton_A_19584_CDS 203 228 202 229 PF01535.20 PPR Family 2 27 31 18.0 0.0024 1 CL0020
Cotton_A_19584_CDS 234 257 233 258 PF01535.20 PPR Family 2 25 31 13.4 0.071 1 CL0020
Cotton_A_19584_CDS 264 294 264 294 PF01535.20 PPR Family 1 31 31 26.0 6.6e-06 1 CL0020
Cotton_A_19584_CDS 337 360 334 363 PF01535.20 PPR Family 4 27 31 17.4 0.0036 1 CL0020
Cotton_A_19584_CDS 368 393 365 395 PF01535.20 PPR Family 4 29 31 18.4 0.0018 1 CL0020
Cotton_A_19584_CDS 396 425 396 426 PF01535.20 PPR Family 1 30 31 29.2 6.3e-07 1 CL0020
Cotton_A_19584_CDS 469 494 466 495 PF01535.20 PPR Family 4 29 31 14.5 0.031 1 CL0020
Cotton_A_19584_CDS 495 541 494 543 PF13041.6 PPR_2 Repeat 2 48 50 35.0 1.2e-08 1 CL0020
Cotton_A_19584_CDS 569 593 568 596 PF01535.20 PPR Family 2 26 31 18.4 0.0017 1 CL0020
Cotton_A_13046_CDS 48 159 30 161 PF01161.20 PBP Domain 11 130 132 71.3 9e-20 1 No_clan
Cotton_A_25948_CDS 210 296 198 308 PF00201.18 UDPGT Family 328 409 499 42.0 5.3e-11 1 CL0113
Cotton_A_27353_CDS 86 436 85 446 PF00155.21 Aminotran_1_2 Domain 2 348 363 116.7 1.3e-33 1 CL0061
Cotton_A_25846_CDS 48 459 48 482 PF00067.22 p450 Domain 1 437 463 203.1 7.1e-60 1 No_clan
Cotton_A_16748_CDS 177 224 175 224 PF00010.26 HLH Domain 3 53 53 40.6 1.8e-10 1 No_clan
Cotton_A_20344_CDS 41 75 39 75 PF00400.32 WD40 Repeat 3 38 38 28.2 2.3e-06 1 CL0186
Cotton_A_20344_CDS 167 198 161 199 PF00400.32 WD40 Repeat 7 37 38 19.2 0.0017 1 CL0186
Cotton_A_20344_CDS 204 240 203 241 PF00400.32 WD40 Repeat 2 37 38 21.4 0.00034 1 CL0186
Cotton_A_20344_CDS 251 286 249 287 PF00400.32 WD40 Repeat 3 37 38 20.7 0.00053 1 CL0186
Cotton_A_20344_CDS 301 330 297 331 PF00400.32 WD40 Repeat 7 37 38 23.3 8.3e-05 1 CL0186
Cotton_A_20344_CDS 339 382 338 383 PF00400.32 WD40 Repeat 2 37 38 20.6 0.00057 1 CL0186
Cotton_A_07019_CDS 75 186 75 189 PF00072.24 Response_reg Domain 1 109 112 71.8 4.8e-20 1 CL0304
Cotton_A_33239_CDS 3 324 1 337 PF00067.22 p450 Domain 117 447 463 221.6 1.7e-65 1 No_clan
Cotton_A_04665_CDS 41 124 2 124 PF04885.13 Stig1 Family 53 139 139 97.1 1.2e-27 1 No_clan
Cotton_A_33129_CDS 22 117 1 147 PF14009.6 DUF4228 Family 14 105 179 84.4 1.2e-23 1 No_clan
Cotton_A_37812_CDS 76 103 73 103 PF01535.20 PPR Family 4 31 31 10.5 0.61 1 CL0020
Cotton_A_37812_CDS 146 173 144 174 PF01535.20 PPR Family 3 30 31 19.2 0.00099 1 CL0020
Cotton_A_37812_CDS 175 202 175 204 PF01535.20 PPR Family 1 28 31 18.7 0.0014 1 CL0020
Cotton_A_37812_CDS 280 318 279 326 PF13041.6 PPR_2 Repeat 2 40 50 33.0 5.1e-08 1 CL0020
Cotton_A_37812_CDS 456 479 456 483 PF01535.20 PPR Family 4 27 31 12.0 0.2 1 CL0020
Cotton_A_37812_CDS 482 529 481 530 PF13041.6 PPR_2 Repeat 2 49 50 42.8 4.4e-11 1 CL0020
Cotton_A_37812_CDS 583 630 582 631 PF13041.6 PPR_2 Repeat 2 49 50 42.5 5.3e-11 1 CL0020
Cotton_A_37812_CDS 657 682 656 684 PF01535.20 PPR Family 2 27 31 12.1 0.18 1 CL0020
Cotton_A_06234_CDS 83 248 83 250 PF00071.22 Ras Domain 1 160 162 69.0 3.4e-19 1 CL0023
Cotton_A_22993_CDS 39 124 37 128 PF00153.27 Mito_carr Family 4 91 97 79.9 9.8e-23 1 No_clan
Cotton_A_22993_CDS 141 233 139 234 PF00153.27 Mito_carr Family 3 96 97 91.3 2.7e-26 1 No_clan
Cotton_A_22993_CDS 243 346 242 349 PF00153.27 Mito_carr Family 2 93 97 86.8 7.1e-25 1 No_clan
Cotton_A_09044_CDS 23 184 18 233 PF13360.6 PQQ_2 Domain 35 194 237 42.3 6.3e-11 1 CL0186
Cotton_A_18645_CDS 258 343 255 354 PF03168.13 LEA_2 Domain 4 84 101 26.3 8.4e-06 1 CL0159
Cotton_A_11104_CDS 84 237 83 248 PF00069.25 Pkinase Domain 2 147 264 113.5 1e-32 1 CL0016
Cotton_A_11104_CDS 318 429 308 429 PF00069.25 Pkinase Domain 153 264 264 78.0 7.2e-22 1 CL0016
Cotton_A_03720_CDS 356 398 356 399 PF06203.14 CCT Motif 1 43 44 59.6 2.2e-16 1 CL0281
Cotton_A_28537_CDS 2 86 1 88 PF03242.13 LEA_3 Family 8 90 93 86.3 1.7e-24 1 No_clan
Cotton_A_28537_CDS 87 271 87 271 PF17135.4 Ribosomal_L18 Family 1 186 187 314.7 1.4e-94 1 CL0588
Cotton_A_37251_CDS 9 151 9 153 PF00179.26 UQ_con Domain 1 138 140 150.6 2.1e-44 1 CL0208
Cotton_A_05125_CDS 26 263 26 263 PF00230.20 MIP Family 1 227 227 285.9 2.3e-85 1 No_clan
Cotton_A_08476_CDS 22 250 17 252 PF13561.6 adh_short_C2 Domain 4 232 234 213.2 3.6e-63 1 CL0063
Cotton_A_18040_CDS 117 160 116 160 PF13639.6 zf-RING_2 Domain 2 44 44 48.9 6.1e-13 1 CL0229
Cotton_A_11684_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 55.7 4.1e-15 1 CL0123
Cotton_A_11684_CDS 67 111 67 112 PF00249.31 Myb_DNA-binding Domain 1 45 46 55.0 6.6e-15 1 CL0123
Cotton_A_26212_CDS 17 138 17 139 PF03463.15 eRF1_1 Domain 1 128 129 70.3 1.5e-19 1 CL0267
Cotton_A_26212_CDS 144 277 144 278 PF03464.15 eRF1_2 Domain 1 132 133 145.7 9.3e-43 1 CL0267
Cotton_A_26212_CDS 281 418 281 418 PF03465.15 eRF1_3 Domain 1 113 113 128.4 1.7e-37 1 CL0101
Cotton_A_32367_CDS 418 472 415 477 PF00170.21 bZIP_1 Family 5 59 64 35.3 8.8e-09 1 CL0018
Cotton_A_28256_CDS 13 228 13 228 PF00318.20 Ribosomal_S2 Family 1 215 215 258.0 4.9e-77 1 CL0067
Cotton_A_28256_CDS 289 487 288 488 PF00119.20 ATP-synt_A Domain 2 210 211 169.9 7.2e-50 1 No_clan
Cotton_A_36688_CDS 94 156 94 156 PF03106.15 WRKY Domain 1 59 59 65.1 4.8e-18 1 CL0274
Cotton_A_40201_CDS 22 136 14 234 PF06414.12 Zeta_toxin Domain 11 118 199 57.3 1.2e-15 1 CL0023
Cotton_A_11930_CDS 56 229 56 243 PF02358.16 Trehalose_PPase Family 1 178 233 164.9 1.6e-48 1 CL0137
Cotton_A_24234_CDS 9 40 8 40 PF14369.6 zinc_ribbon_9 Domain 2 35 35 43.3 3.1e-11 1 CL0167
Cotton_A_24234_CDS 225 267 224 267 PF13639.6 zf-RING_2 Domain 2 44 44 44.7 1.3e-11 1 CL0229
Cotton_A_25091_CDS 181 683 181 685 PF03141.16 Methyltransf_29 Family 1 504 506 768.8 2.2e-231 1 CL0063
Cotton_A_25840_CDS 252 289 230 289 PF03765.15 CRAL_TRIO_N Domain 20 54 54 37.6 1.8e-09 1 CL0214
Cotton_A_25840_CDS 313 474 309 475 PF00650.20 CRAL_TRIO Domain 7 158 159 100.1 9.8e-29 1 CL0512
Cotton_A_29539_CDS 292 353 288 353 PF03108.15 DBD_Tnp_Mut Family 6 67 67 50.3 1.8e-13 1 CL0274
Cotton_A_06388_CDS 4 157 4 225 PF06075.12 DUF936 Family 1 138 692 171.4 4.2e-50 1 No_clan
Cotton_A_13836_CDS 41 88 41 88 PF00477.17 LEA_5 Family 62 109 109 74.3 9.4e-21 1 CL0385
Cotton_A_25334_CDS 25 316 25 316 PF00069.25 Pkinase Domain 1 264 264 223.8 2.4e-66 1 CL0016
Cotton_A_40331_CDS 62 276 62 276 PF11152.8 CCB2_CCB4 Family 1 196 196 196.6 2.5e-58 1 CL0161
Cotton_A_25370_CDS 1 360 1 362 PF05879.12 RHD3 Family 1 374 743 586.7 6.4e-176 1 CL0023
Cotton_A_25370_CDS 361 704 357 713 PF05879.12 RHD3 Family 405 732 743 321.8 8.3e-96 1 CL0023
Cotton_A_25916_CDS 116 182 114 182 PF02135.16 zf-TAZ Family 3 75 75 54.2 1.5e-14 1 No_clan
Cotton_A_08291_CDS 35 173 18 174 PF14566.6 PTPlike_phytase Domain 18 153 156 61.1 1.3e-16 1 CL0031
Cotton_A_19901_CDS 8 115 7 117 PF06552.12 TOM20_plant Family 2 109 187 187.4 2.1e-55 1 CL0020
Cotton_A_11079_CDS 29 148 28 148 PF02221.15 E1_DerP2_DerF2 Domain 2 134 134 71.6 8.5e-20 1 CL0532
Cotton_A_12765_CDS 151 447 149 449 PF00676.20 E1_dh Family 3 298 300 326.1 1.6e-97 1 CL0254
Cotton_A_18520_CDS 18 57 18 59 PF08879.10 WRC Domain 1 40 43 50.4 1.3e-13 1 No_clan
Cotton_A_18520_CDS 192 257 188 265 PF10497.9 zf-4CXXC_R1 Domain 5 77 99 31.7 1.3e-07 1 No_clan
Cotton_A_18520_CDS 759 852 752 856 PF02373.22 JmjC Domain 21 110 114 30.4 4.2e-07 1 CL0029
Cotton_A_05155_CDS 21 266 21 266 PF06813.13 Nodulin-like Family 1 250 250 301.6 4.3e-90 1 CL0015
Cotton_A_18525_CDS 1148 1348 1133 1349 PF03104.19 DNA_pol_B_exo1 Family 157 336 337 44.2 1.4e-11 1 CL0219
Cotton_A_18525_CDS 1416 1863 1414 1866 PF00136.21 DNA_pol_B Family 3 456 459 325.1 6.6e-97 1 CL0194
Cotton_A_18525_CDS 1909 1982 1909 1982 PF14260.6 zf-C4pol Domain 1 70 70 50.5 2.1e-13 1 No_clan
Cotton_A_22147_CDS 28 65 28 65 PF00187.19 Chitin_bind_1 Domain 1 38 38 51.7 8.5e-14 1 No_clan
Cotton_A_22147_CDS 81 311 81 311 PF00182.19 Glyco_hydro_19 Domain 1 232 232 419.1 5.6e-126 1 CL0037
Cotton_A_27475_CDS 16 127 16 170 PF01593.24 Amino_oxidase Domain 1 102 452 70.3 2e-19 1 CL0063
Cotton_A_27475_CDS 171 393 162 394 PF01593.24 Amino_oxidase Domain 225 451 452 155.4 2.9e-45 1 CL0063
Cotton_A_15666_CDS 193 394 165 560 PF03372.23 Exo_endo_phos Domain 15 177 233 40.0 3e-10 1 CL0530
Cotton_A_26144_CDS 309 556 308 560 PF00459.25 Inositol_P Family 20 268 272 207.4 2.8e-61 1 CL0171
Cotton_A_08296_CDS 473 530 473 531 PF13855.6 LRR_8 Repeat 3 60 61 28.0 1.3e-06 1 CL0022
Cotton_A_08296_CDS 724 991 723 994 PF00069.25 Pkinase Domain 2 258 264 168.9 1.3e-49 1 CL0016
Cotton_A_14874_CDS 51 108 51 108 PF08246.12 Inhibitor_I29 Domain 1 58 58 66.3 2.4e-18 1 No_clan
Cotton_A_14874_CDS 138 354 138 354 PF00112.23 Peptidase_C1 Domain 1 218 218 285.8 2.8e-85 1 CL0125
Cotton_A_14874_CDS 388 435 388 435 PF00396.18 Granulin Family 1 42 42 35.6 8.8e-09 1 No_clan
Cotton_A_07237_CDS 55 475 55 477 PF05577.12 Peptidase_S28 Domain 1 432 434 316.0 3.7e-94 1 CL0028
Cotton_A_33445_CDS 108 174 99 185 PF00350.23 Dynamin_N Domain 59 120 168 34.7 1.7e-08 1 CL0023
Cotton_A_18904_CDS 160 466 158 467 PF00291.25 PALP Family 3 293 294 166.8 7.2e-49 1 CL0063
Cotton_A_36951_CDS 63 223 63 223 PF01554.18 MatE Family 1 161 161 120.9 4e-35 1 CL0222
Cotton_A_36951_CDS 284 447 284 447 PF01554.18 MatE Family 1 161 161 125.5 1.5e-36 1 CL0222
Cotton_A_31150_CDS 10 257 10 261 PF00069.25 Pkinase Domain 1 258 264 162.6 1.1e-47 1 CL0016
Cotton_A_01948_CDS 232 289 227 289 PF07647.17 SAM_2 Domain 7 65 66 55.8 3.6e-15 1 CL0003
Cotton_A_37514_CDS 113 164 113 164 PF00010.26 HLH Domain 1 53 53 39.4 4.2e-10 1 No_clan
Cotton_A_28534_CDS 24 63 23 63 PF08263.12 LRRNT_2 Family 2 41 41 32.4 8.7e-08 1 No_clan
Cotton_A_28534_CDS 421 440 420 441 PF13516.6 LRR_6 Repeat 2 21 24 12.5 0.12 1 CL0022
Cotton_A_28534_CDS 791 808 791 809 PF13516.6 LRR_6 Repeat 1 18 24 9.3 1.2 1 CL0022
Cotton_A_28534_CDS 944 999 941 999 PF13855.6 LRR_8 Repeat 6 61 61 37.6 1.4e-09 1 CL0022
Cotton_A_07512_CDS 54 331 54 332 PF03009.17 GDPD Family 1 258 259 189.4 9.6e-56 1 CL0384
Cotton_A_31376_CDS 22 46 21 47 PF13912.6 zf-C2H2_6 Domain 2 26 27 26.6 4.1e-06 1 CL0361
Cotton_A_36797_CDS 91 145 78 146 PF00078.27 RVT_1 Family 122 180 222 40.6 1.9e-10 1 CL0027
Cotton_A_03737_CDS 2 158 2 178 PF03446.15 NAD_binding_2 Domain 1 154 158 141.1 3.3e-41 1 CL0063
Cotton_A_03737_CDS 164 282 164 284 PF14833.6 NAD_binding_11 Domain 1 120 122 87.0 1.1e-24 1 CL0106
Cotton_A_15426_CDS 1 101 1 101 PF01157.18 Ribosomal_L21e Family 1 101 101 158.8 2.6e-47 1 CL0107
Cotton_A_20271_CDS 8 71 7 71 PF00808.23 CBFD_NFYB_HMF Domain 2 65 65 67.5 9e-19 1 CL0012
Cotton_A_06858_CDS 41 66 13 66 PF03765.15 CRAL_TRIO_N Domain 29 54 54 30.9 2.3e-07 1 CL0214
Cotton_A_06858_CDS 88 240 85 240 PF00650.20 CRAL_TRIO Domain 4 159 159 132.0 1.5e-38 1 CL0512
Cotton_A_03354_CDS 25 123 2 123 PF04043.15 PMEI Domain 44 154 154 43.3 4.4e-11 1 No_clan
Cotton_A_03354_CDS 159 459 159 459 PF01095.19 Pectinesterase Family 1 298 298 462.1 5e-139 1 CL0268
Cotton_A_37919_CDS 38 298 38 298 PF10269.9 Tmemb_185A Family 1 250 250 310.2 1.1e-92 1 No_clan
Cotton_A_37919_CDS 422 463 419 464 PF13920.6 zf-C3HC4_3 Domain 4 49 50 40.2 2.3e-10 1 CL0229
Cotton_A_01652_CDS 35 75 33 76 PF00856.28 SET Family 132 168 169 28.9 1.3e-06 1 No_clan
Cotton_A_30023_CDS 10 108 9 110 PF00153.27 Mito_carr Family 2 95 97 67.9 5.6e-19 1 No_clan
Cotton_A_30023_CDS 114 209 113 210 PF00153.27 Mito_carr Family 2 95 97 69.2 2.1e-19 1 No_clan
Cotton_A_30023_CDS 216 299 213 302 PF00153.27 Mito_carr Family 4 93 97 63.6 1.2e-17 1 No_clan
Cotton_A_07877_CDS 8 138 7 152 PF00335.20 Tetraspanin Family 2 106 229 49.8 3.6e-13 1 CL0347
Cotton_A_25646_CDS 28 378 28 379 PF00067.22 p450 Domain 1 367 463 138.1 3.6e-40 1 No_clan
Cotton_A_21075_CDS 2 49 1 50 PF00010.26 HLH Domain 4 52 53 27.6 2e-06 1 No_clan
Cotton_A_11765_CDS 125 211 123 225 PF14288.6 FKS1_dom1 Family 3 109 129 75.1 6.2e-21 1 No_clan
Cotton_A_11765_CDS 779 1056 777 1066 PF02364.15 Glucan_synthase Family 125 415 819 328.2 1e-97 1 CL0111
Cotton_A_11765_CDS 1074 1309 1057 1392 PF02364.15 Glucan_synthase Family 494 731 819 177.4 4.2e-52 1 CL0111
Cotton_A_31724_CDS 77 254 76 254 PF02330.16 MAM33 Domain 2 212 212 159.8 8.9e-47 1 No_clan
Cotton_A_26703_CDS 38 151 37 152 PF08240.12 ADH_N Domain 2 108 109 92.6 1.3e-26 1 CL0296
Cotton_A_26703_CDS 194 317 194 318 PF00107.26 ADH_zinc_N Family 1 129 130 64.0 1.3e-17 1 CL0063
Cotton_A_29769_CDS 4 77 4 77 PF08783.11 DWNN Domain 1 74 74 77.8 5.9e-22 1 CL0072
Cotton_A_29769_CDS 162 182 162 182 PF13696.6 zf-CCHC_2 Domain 1 21 21 31.9 8.4e-08 1 CL0511
Cotton_A_09005_CDS 36 324 36 327 PF00850.19 Hist_deacetyl Domain 1 304 307 278.0 1.1e-82 1 CL0302
Cotton_A_10984_CDS 170 376 169 432 PF00069.25 Pkinase Domain 2 204 264 139.6 1.2e-40 1 CL0016
Cotton_A_28275_CDS 46 123 46 129 PF01988.19 VIT1 Family 1 79 215 92.4 3.5e-26 1 No_clan
Cotton_A_28275_CDS 125 212 117 213 PF01988.19 VIT1 Family 127 214 215 68.1 9.3e-19 1 No_clan
Cotton_A_15281_CDS 82 173 63 193 PF00388.19 PI-PLC-X Family 24 121 145 32.3 6.6e-08 1 CL0384
Cotton_A_03879_CDS 7 81 2 84 PF04488.15 Gly_transf_sug Family 32 94 98 56.8 2.7e-15 1 CL0110
Cotton_A_03879_CDS 100 222 99 225 PF04572.12 Gb3_synth Family 2 127 130 106.0 1.5e-30 1 No_clan
Cotton_A_15262_CDS 17 159 11 170 PF13622.6 4HBT_3 Domain 82 213 248 55.7 8.3e-15 1 CL0050
Cotton_A_15262_CDS 161 305 158 306 PF00071.22 Ras Domain 27 161 162 127.5 3.4e-37 1 CL0023
Cotton_A_40110_CDS 63 170 55 171 PF04178.12 Got1 Family 8 112 113 112.7 1.2e-32 1 No_clan
Cotton_A_10988_CDS 38 534 38 534 PF00118.24 Cpn60_TCP1 Family 1 491 491 498.6 1.7e-149 1 No_clan
Cotton_A_26180_CDS 516 598 514 601 PF00153.27 Mito_carr Family 3 93 97 45.6 4.9e-12 1 No_clan
Cotton_A_26180_CDS 611 689 606 692 PF00153.27 Mito_carr Family 8 93 97 28.1 1.4e-06 1 No_clan
Cotton_A_26180_CDS 697 783 695 787 PF00153.27 Mito_carr Family 3 93 97 71.4 4.4e-20 1 No_clan
Cotton_A_35390_CDS 22 207 22 207 PF01105.24 EMP24_GP25L Domain 1 182 182 178.7 1.1e-52 1 CL0521
Cotton_A_32831_CDS 17 271 17 271 PF00069.25 Pkinase Domain 1 264 264 248.4 7.7e-74 1 CL0016
Cotton_A_32831_CDS 298 358 298 358 PF03822.14 NAF Domain 1 54 54 81.3 4.2e-23 1 CL0573
Cotton_A_00086_CDS 89 259 88 260 PF04144.13 SCAMP Family 2 173 174 169.6 7.8e-50 1 No_clan
Cotton_A_06358_CDS 246 297 246 297 PF00249.31 Myb_DNA-binding Domain 1 46 46 26.8 4.3e-06 1 CL0123
Cotton_A_13019_CDS 25 326 25 326 PF00069.25 Pkinase Domain 1 264 264 248.1 9.1e-74 1 CL0016
Cotton_A_26183_CDS 77 95 75 95 PF00612.27 IQ Motif 3 21 21 23.3 3.4e-05 1 CL0220
Cotton_A_07158_CDS 178 228 177 229 PF00847.20 AP2 Domain 2 53 54 53.0 3e-14 1 CL0081
Cotton_A_12247_CDS 43 135 43 136 PF01336.25 tRNA_anti-codon Domain 1 75 76 41.4 1.1e-10 1 CL0021
Cotton_A_03528_CDS 3 434 1 434 PF00022.19 Actin Family 5 407 407 323.1 1.9e-96 1 CL0108
Cotton_A_18950_CDS 34 267 33 290 PF00657.22 Lipase_GDSL Family 2 170 200 48.0 1.5e-12 1 CL0264
Cotton_A_08159_CDS 111 160 109 160 PF00847.20 AP2 Domain 3 54 54 48.6 6.9e-13 1 CL0081
Cotton_A_35056_CDS 115 191 104 208 PF00085.20 Thioredoxin Domain 11 87 103 52.1 5.2e-14 1 CL0172
Cotton_A_33688_CDS 504 542 504 543 PF00514.23 Arm Repeat 2 40 41 24.1 2.5e-05 1 CL0020
Cotton_A_08246_CDS 15 69 11 70 PF00403.26 HMA Domain 6 61 62 35.7 8.7e-09 1 No_clan
Cotton_A_32835_CDS 8 94 8 99 PF02214.22 BTB_2 Domain 1 87 94 56.8 2.2e-15 1 CL0033
Cotton_A_02202_CDS 154 203 154 203 PF00847.20 AP2 Domain 1 53 54 35.7 7.3e-09 1 CL0081
Cotton_A_02202_CDS 246 293 246 311 PF00847.20 AP2 Domain 1 50 54 33.0 5.1e-08 1 CL0081
Cotton_A_01973_CDS 260 299 259 303 PF13041.6 PPR_2 Repeat 2 41 50 30.1 3.9e-07 1 CL0020
Cotton_A_01973_CDS 398 430 397 430 PF12854.7 PPR_1 Repeat 2 34 34 47.1 1.3e-12 1 CL0020
Cotton_A_01973_CDS 432 464 432 465 PF12854.7 PPR_1 Repeat 1 33 34 31.4 1.1e-07 1 CL0020
Cotton_A_01973_CDS 477 499 476 500 PF01535.20 PPR Family 5 27 31 10.8 0.48 1 CL0020
Cotton_A_34426_CDS 77 133 76 134 PF02701.15 zf-Dof Family 2 58 59 110.6 2.8e-32 1 No_clan
Cotton_A_17957_CDS 10 85 10 85 PF12609.8 DUF3774 Family 1 74 74 116.5 8.2e-34 1 No_clan
Cotton_A_17925_CDS 114 375 112 375 PF07714.17 Pkinase_Tyr Domain 3 259 259 182.4 9.5e-54 1 CL0016
Cotton_A_15185_CDS 108 151 107 155 PF00847.20 AP2 Domain 2 50 54 26.8 4.4e-06 1 CL0081
Cotton_A_17500_CDS 32 101 32 102 PF00076.22 RRM_1 Domain 1 69 70 49.6 2.6e-13 1 CL0221
Cotton_A_17500_CDS 120 187 120 188 PF00076.22 RRM_1 Domain 1 69 70 56.8 1.4e-15 1 CL0221
Cotton_A_17500_CDS 210 278 210 278 PF00076.22 RRM_1 Domain 1 69 70 81.8 2.4e-23 1 CL0221
Cotton_A_17500_CDS 313 381 313 382 PF00076.22 RRM_1 Domain 1 69 70 69.5 1.5e-19 1 CL0221
Cotton_A_35547_CDS 109 293 56 330 PF00743.19 FMO-like Family 142 332 532 54.7 5.9e-15 1 CL0063
Cotton_A_12165_CDS 160 663 160 663 PF00330.20 Aconitase Family 1 461 461 614.6 1.2e-184 1 No_clan
Cotton_A_12165_CDS 792 919 791 921 PF00694.19 Aconitase_C Domain 2 129 131 149.2 7.5e-44 1 CL0364
Cotton_A_14375_CDS 33 65 31 65 PF06376.12 AGP Family 1 36 36 68.2 3.9e-19 1 No_clan
Cotton_A_13869_CDS 88 290 72 291 PF00141.23 peroxidase Domain 40 228 229 177.9 2.5e-52 1 CL0617
Cotton_A_07407_CDS 56 94 56 94 PF04810.15 zf-Sec23_Sec24 Domain 1 39 39 54.1 1.1e-14 1 No_clan
Cotton_A_07407_CDS 130 397 129 397 PF04811.15 Sec23_trunk Domain 2 243 243 248.2 8.3e-74 1 CL0128
Cotton_A_07407_CDS 408 512 407 512 PF08033.12 Sec23_BS Domain 2 96 96 105.1 2.5e-30 1 No_clan
Cotton_A_07407_CDS 526 622 526 625 PF04815.15 Sec23_helical Domain 1 100 103 78.6 2.7e-22 1 No_clan
Cotton_A_07407_CDS 638 722 636 723 PF00626.22 Gelsolin Domain 3 72 76 51.5 6.9e-14 1 CL0092
Cotton_A_03258_CDS 35 99 35 99 PF00076.22 RRM_1 Domain 1 70 70 39.3 4.2e-10 1 CL0221
Cotton_A_03258_CDS 176 229 174 231 PF00076.22 RRM_1 Domain 10 68 70 35.4 7.2e-09 1 CL0221
Cotton_A_03258_CDS 478 592 474 603 PF07744.13 SPOC Domain 5 132 151 62.9 3e-17 1 CL0616
Cotton_A_20795_CDS 117 376 115 379 PF07714.17 Pkinase_Tyr Domain 3 256 259 170.7 3.5e-50 1 CL0016
Cotton_A_11672_CDS 20 97 20 98 PF13334.6 DUF4094 Family 1 87 88 30.1 4.7e-07 1 No_clan
Cotton_A_11672_CDS 132 326 131 328 PF01762.21 Galactosyl_T Family 2 193 195 117.7 5.6e-34 1 CL0110
Cotton_A_06667_CDS 56 453 56 454 PF00464.19 SHMT Domain 1 398 399 697.8 3e-210 1 CL0061
Cotton_A_39357_CDS 176 208 167 208 PF00400.32 WD40 Repeat 9 38 38 15.4 0.026 1 CL0186
Cotton_A_39357_CDS 263 299 262 299 PF00400.32 WD40 Repeat 2 38 38 22.5 0.00015 1 CL0186
Cotton_A_32044_CDS 75 226 75 226 PF08082.11 PRO8NT Domain 1 152 152 286.3 5e-86 1 No_clan
Cotton_A_32044_CDS 414 819 413 819 PF08083.11 PROCN Domain 2 407 407 783.6 3.2e-236 1 No_clan
Cotton_A_32044_CDS 1004 1094 1004 1095 PF10598.9 RRM_4 Domain 1 91 92 157.4 8.8e-47 1 No_clan
Cotton_A_32044_CDS 1229 1362 1229 1362 PF10597.9 U5_2-snRNA_bdg Domain 1 134 134 242.9 7.5e-73 1 No_clan
Cotton_A_32044_CDS 1461 1619 1461 1619 PF10596.9 U6-snRNA_bdg Domain 1 159 159 298.5 1.1e-89 1 CL0363
Cotton_A_32044_CDS 1779 2008 1779 2008 PF12134.8 PRP8_domainIV Domain 1 230 230 431.3 8.1e-130 1 No_clan
Cotton_A_32044_CDS 2120 2218 2118 2224 PF01398.21 JAB Family 3 112 118 29.5 5.9e-07 1 CL0366
Cotton_A_32044_CDS 2231 2351 2231 2352 PF08084.11 PROCT Domain 1 122 123 172.6 2.8e-51 1 No_clan
Cotton_A_20362_CDS 137 389 129 389 PF00481.21 PP2C Family 10 258 258 216.5 4.7e-64 1 CL0238
Cotton_A_07213_CDS 8 75 1 76 PF02788.16 RuBisCO_large_N Domain 54 119 120 42.8 4.9e-11 1 No_clan
Cotton_A_07213_CDS 86 137 86 137 PF00016.20 RuBisCO_large Domain 1 52 299 54.4 1.1e-14 1 No_clan
Cotton_A_05403_CDS 44 345 43 347 PF02309.16 AUX_IAA Family 2 234 237 240.9 1.6e-71 1 CL0072
Cotton_A_19415_CDS 12 156 12 156 PF01118.24 Semialdhyde_dh Domain 1 121 121 97.9 5.4e-28 1 CL0063
Cotton_A_19415_CDS 173 331 173 331 PF02774.18 Semialdhyde_dhC Domain 1 184 184 70.5 1.8e-19 1 CL0139
Cotton_A_21033_CDS 19 154 16 161 PF10358.9 NT-C2 Family 9 135 146 34.2 1.9e-08 1 CL0154
Cotton_A_03817_CDS 161 186 157 186 PF01535.20 PPR Family 6 31 31 14.9 0.023 1 CL0020
Cotton_A_03817_CDS 191 236 188 238 PF13041.6 PPR_2 Repeat 4 48 50 46.0 4.3e-12 1 CL0020
Cotton_A_03817_CDS 259 307 259 309 PF13041.6 PPR_2 Repeat 1 48 50 41.1 1.4e-10 1 CL0020
Cotton_A_03817_CDS 321 378 318 380 PF13812.6 PPR_3 Repeat 4 61 63 44.3 1.4e-11 1 CL0020
Cotton_A_03817_CDS 436 482 435 483 PF13041.6 PPR_2 Repeat 2 48 50 37.4 2.1e-09 1 CL0020
Cotton_A_35258_CDS 34 116 34 116 PF02298.17 Cu_bind_like Domain 1 84 84 85.4 2e-24 1 CL0026
Cotton_A_13623_CDS 34 102 33 102 PF00076.22 RRM_1 Domain 3 70 70 50.1 1.8e-13 1 CL0221
Cotton_A_31704_CDS 7 58 6 58 PF08263.12 LRRNT_2 Family 2 41 41 33.7 3.3e-08 1 No_clan
Cotton_A_31704_CDS 261 320 260 320 PF13855.6 LRR_8 Repeat 2 61 61 35.1 8.1e-09 1 CL0022
Cotton_A_31704_CDS 473 493 471 493 PF00560.33 LRR_1 Repeat 3 23 23 11.0 0.53 1 CL0022
Cotton_A_31704_CDS 593 614 593 621 PF00560.33 LRR_1 Repeat 1 21 23 12.5 0.17 1 CL0022
Cotton_A_31704_CDS 711 751 707 751 PF13855.6 LRR_8 Repeat 21 61 61 27.6 1.8e-06 1 CL0022
Cotton_A_04146_CDS 21 601 21 607 PF10345.9 Cohesin_load Family 38 586 597 58.2 5.2e-16 1 CL0020
Cotton_A_31821_CDS 45 115 44 115 PF15044.6 CLU_N Family 2 79 79 35.5 9.7e-09 1 No_clan
Cotton_A_31821_CDS 709 851 708 852 PF12807.7 eIF3_p135 Family 2 175 176 79.5 3e-22 1 No_clan
Cotton_A_31821_CDS 921 991 920 994 PF13424.6 TPR_12 Repeat 2 72 77 49.9 3e-13 1 CL0020
Cotton_A_31821_CDS 1005 1079 997 1080 PF13424.6 TPR_12 Repeat 2 76 77 44.9 1.1e-11 1 CL0020
Cotton_A_02362_CDS 128 400 125 402 PF00069.25 Pkinase Domain 5 260 264 152.9 1e-44 1 CL0016
Cotton_A_14507_CDS 194 512 194 513 PF00225.23 Kinesin Domain 1 332 333 310.5 1.1e-92 1 CL0023
Cotton_A_13462_CDS 1 32 1 32 PF03134.19 TB2_DP1_HVA22 Family 46 77 77 28.4 1.1e-06 1 No_clan
Cotton_A_02106_CDS 53 182 52 182 PF03087.14 DUF241 Family 50 184 234 104.1 9.6e-30 1 CL0133
Cotton_A_12631_CDS 72 244 71 244 PF06351.11 Allene_ox_cyc Family 2 175 175 312.1 8.8e-94 1 CL0650
Cotton_A_39167_CDS 40 74 34 74 PF08263.12 LRRNT_2 Family 7 41 41 22.5 0.0001 1 No_clan
Cotton_A_39167_CDS 463 520 462 522 PF13855.6 LRR_8 Repeat 2 59 61 33.9 1.9e-08 1 CL0022
Cotton_A_39167_CDS 785 1057 782 1061 PF00069.25 Pkinase Domain 4 258 264 137.7 4.5e-40 1 CL0016
Cotton_A_41086_CDS 97 361 96 403 PF13249.6 SQHop_cyclase_N Domain 2 247 291 132.4 1.7e-38 1 CL0059
Cotton_A_41086_CDS 414 732 412 732 PF13243.6 SQHop_cyclase_C Domain 4 319 319 120.1 9.9e-35 1 CL0059
Cotton_A_25645_CDS 397 486 388 489 PF00307.31 CH Domain 23 105 109 24.8 1.9e-05 1 CL0188
Cotton_A_25645_CDS 736 755 736 756 PF00612.27 IQ Motif 1 20 21 18.0 0.0017 1 CL0220
Cotton_A_25645_CDS 839 855 838 857 PF00612.27 IQ Motif 2 18 21 19.0 0.00079 1 CL0220
Cotton_A_25645_CDS 900 917 900 918 PF00612.27 IQ Motif 3 20 21 18.9 0.00087 1 CL0220
Cotton_A_25645_CDS 989 1006 987 1007 PF00612.27 IQ Motif 3 20 21 19.0 0.00082 1 CL0220
Cotton_A_25645_CDS 1047 1064 1047 1065 PF00612.27 IQ Motif 3 20 21 21.3 0.00015 1 CL0220
Cotton_A_25645_CDS 1121 1135 1118 1137 PF00612.27 IQ Motif 5 19 21 19.1 0.00077 1 CL0220
Cotton_A_25645_CDS 1165 1182 1163 1183 PF00612.27 IQ Motif 3 20 21 12.3 0.11 1 CL0220
Cotton_A_25645_CDS 1234 1252 1234 1253 PF00612.27 IQ Motif 1 19 21 17.0 0.0036 1 CL0220
Cotton_A_25645_CDS 1257 1276 1257 1277 PF00612.27 IQ Motif 1 20 21 23.8 2.2e-05 1 CL0220
Cotton_A_25645_CDS 1374 1392 1374 1394 PF00612.27 IQ Motif 1 19 21 19.5 0.00055 1 CL0220
Cotton_A_25645_CDS 1398 1415 1397 1417 PF00612.27 IQ Motif 2 19 21 17.1 0.0032 1 CL0220
Cotton_A_25645_CDS 1420 1440 1420 1440 PF00612.27 IQ Motif 1 21 21 11.5 0.21 1 CL0220
Cotton_A_25645_CDS 1515 1532 1514 1533 PF00612.27 IQ Motif 2 19 21 15.1 0.015 1 CL0220
Cotton_A_25645_CDS 1539 1555 1537 1557 PF00612.27 IQ Motif 3 19 21 20.1 0.00036 1 CL0220
Cotton_A_06162_CDS 16 63 16 63 PF00249.31 Myb_DNA-binding Domain 1 46 46 53.4 2.2e-14 1 CL0123
Cotton_A_06162_CDS 69 114 69 114 PF00249.31 Myb_DNA-binding Domain 1 46 46 57.2 1.4e-15 1 CL0123
Cotton_A_11877_CDS 267 338 267 339 PF00076.22 RRM_1 Domain 1 68 70 48.6 5.1e-13 1 CL0221
Cotton_A_34038_CDS 69 146 69 147 PF10252.9 PP28 Domain 1 84 85 95.3 2.2e-27 1 No_clan
Cotton_A_17815_CDS 2 91 2 91 PF17833.1 UPF0113_N Domain 1 82 82 81.8 3.8e-23 1 CL0668
Cotton_A_17815_CDS 104 182 104 183 PF03657.13 UPF0113 Domain 1 75 76 76.7 1.2e-21 1 CL0178
Cotton_A_24355_CDS 16 61 2 63 PF05922.16 Inhibitor_I9 Domain 35 80 82 22.3 0.00016 1 CL0570
Cotton_A_24355_CDS 86 521 86 545 PF00082.22 Peptidase_S8 Domain 1 284 298 164.5 3.3e-48 1 No_clan
Cotton_A_24355_CDS 597 692 597 696 PF17766.1 fn3_6 Domain 1 90 99 76.6 1.3e-21 1 CL0159
Cotton_A_27467_CDS 11 55 11 62 PF04654.12 DUF599 Family 1 45 210 46.1 3.7e-12 1 No_clan
Cotton_A_36204_CDS 61 155 56 166 PF00651.31 BTB Domain 8 98 111 32.7 7e-08 1 CL0033
Cotton_A_36204_CDS 238 474 237 475 PF03000.14 NPH3 Family 2 257 258 232.5 6.4e-69 1 No_clan
Cotton_A_06664_CDS 4 229 2 235 PF00139.19 Lectin_legB Domain 16 243 249 210.8 2.3e-62 1 CL0004
Cotton_A_06664_CDS 307 572 306 576 PF00069.25 Pkinase Domain 2 260 264 162.8 9.6e-48 1 CL0016
Cotton_A_10980_CDS 39 511 37 513 PF00232.18 Glyco_hydro_1 Domain 3 450 453 499.5 6.4e-150 1 CL0058
Cotton_A_39076_CDS 76 214 76 216 PF01565.23 FAD_binding_4 Domain 1 136 139 86.6 1.2e-24 1 CL0077
Cotton_A_39076_CDS 469 525 469 525 PF08031.12 BBE Domain 1 46 46 77.3 6.9e-22 1 CL0277
Cotton_A_05112_CDS 37 126 36 139 PF07732.15 Cu-oxidase_3 Domain 2 91 119 105.3 1.9e-30 1 CL0026
Cotton_A_05112_CDS 151 314 149 316 PF00394.22 Cu-oxidase Domain 3 157 159 165.9 7.6e-49 1 CL0026
Cotton_A_27810_CDS 172 233 171 236 PF00226.31 DnaJ Domain 2 58 63 52.8 3.1e-14 1 CL0392
Cotton_A_19657_CDS 236 401 81 415 PF00201.18 UDPGT Family 255 408 499 95.5 3.2e-27 1 CL0113
Cotton_A_02824_CDS 12 237 12 237 PF00244.20 14-3-3 Domain 1 222 222 343.1 6e-103 1 No_clan
Cotton_A_03047_CDS 261 319 259 319 PF13855.6 LRR_8 Repeat 3 61 61 38.5 7.2e-10 1 CL0022
Cotton_A_21903_CDS 5 42 3 46 PF00646.33 F-box Domain 6 43 48 44.9 7.2e-12 1 CL0271
Cotton_A_35279_CDS 98 410 80 414 PF00150.18 Cellulase Domain 16 276 281 51.6 9e-14 1 CL0058
Cotton_A_34579_CDS 12 63 12 64 PF09713.10 A_thal_3526 Domain 1 52 53 93.1 8.8e-27 1 No_clan
Cotton_A_11900_CDS 50 100 50 101 PF00847.20 AP2 Domain 1 53 54 45.4 6.9e-12 1 CL0081
Cotton_A_39643_CDS 1 138 1 139 PF12739.7 TRAPPC-Trs85 Family 257 405 406 87.8 7e-25 1 No_clan
Cotton_A_04411_CDS 18 79 18 85 PF01781.18 Ribosomal_L38e Family 1 63 69 111.3 1.7e-32 1 No_clan
Cotton_A_07546_CDS 60 108 59 109 PF00847.20 AP2 Domain 2 53 54 39.6 4.5e-10 1 CL0081
Cotton_A_03221_CDS 84 133 82 134 PF00847.20 AP2 Domain 3 53 54 46.6 2.9e-12 1 CL0081
Cotton_A_12294_CDS 7 185 7 186 PF01294.18 Ribosomal_L13e Family 1 179 180 262.8 1.4e-78 1 No_clan
Cotton_A_07845_CDS 101 190 101 191 PF13167.6 GTP-bdg_N Family 1 88 89 113.5 5.4e-33 1 No_clan
Cotton_A_07845_CDS 193 276 193 276 PF16360.5 GTP-bdg_M Family 1 79 79 78.8 3.5e-22 1 No_clan
Cotton_A_07845_CDS 284 402 283 402 PF01926.23 MMR_HSR1 Family 2 114 114 69.9 1.9e-19 1 CL0023
Cotton_A_20423_CDS 64 128 58 138 PF03330.18 DPBB_1 Domain 7 72 83 31.8 1.3e-07 1 CL0199
Cotton_A_01622_CDS 143 336 129 398 PF07714.17 Pkinase_Tyr Domain 23 206 259 136.0 1.4e-39 1 CL0016
Cotton_A_16840_CDS 122 173 122 173 PF00010.26 HLH Domain 1 53 53 40.4 2.2e-10 1 No_clan
Cotton_A_16280_CDS 239 365 239 366 PF00134.23 Cyclin_N Domain 1 126 127 152.2 5.4e-45 1 CL0065
Cotton_A_16280_CDS 368 490 368 491 PF02984.19 Cyclin_C Domain 1 118 119 116.7 5.9e-34 1 CL0065
Cotton_A_15302_CDS 2 223 1 227 PF00230.20 MIP Family 8 219 227 104.2 8.1e-30 1 No_clan
Cotton_A_12265_CDS 44 77 44 78 PF13041.6 PPR_2 Repeat 1 34 50 34.9 1.3e-08 1 CL0020
Cotton_A_12265_CDS 78 106 78 107 PF01535.20 PPR Family 1 29 31 27.7 1.9e-06 1 CL0020
Cotton_A_12265_CDS 109 132 109 137 PF01535.20 PPR Family 1 24 31 18.5 0.0017 1 CL0020
Cotton_A_12265_CDS 143 167 141 169 PF01535.20 PPR Family 3 27 31 27.5 2.3e-06 1 CL0020
Cotton_A_12265_CDS 172 198 172 202 PF01535.20 PPR Family 1 27 31 20.2 0.00047 1 CL0020
Cotton_A_12265_CDS 203 227 203 228 PF01535.20 PPR Family 1 25 31 15.9 0.011 1 CL0020
Cotton_A_12265_CDS 230 260 227 260 PF12854.7 PPR_1 Repeat 4 34 34 25.3 9.1e-06 1 CL0020
Cotton_A_12265_CDS 262 293 262 295 PF13041.6 PPR_2 Repeat 1 32 50 33.1 4.6e-08 1 CL0020
Cotton_A_12265_CDS 296 324 296 326 PF01535.20 PPR Family 1 29 31 29.3 6e-07 1 CL0020
Cotton_A_12265_CDS 330 353 330 357 PF01535.20 PPR Family 4 27 31 19.3 0.00093 1 CL0020
Cotton_A_12265_CDS 358 387 358 388 PF01535.20 PPR Family 1 30 31 39.5 3.4e-10 1 CL0020
Cotton_A_12265_CDS 417 465 417 466 PF13041.6 PPR_2 Repeat 1 49 50 39.3 5.3e-10 1 CL0020
Cotton_A_12265_CDS 519 566 518 567 PF13041.6 PPR_2 Repeat 2 49 50 46.0 4.3e-12 1 CL0020
Cotton_A_36316_CDS 34 64 31 76 PF00643.24 zf-B_box Domain 4 35 42 25.1 1.4e-05 1 No_clan
Cotton_A_36686_CDS 11 119 2 120 PF07343.11 DUF1475 Family 131 235 236 126.4 1.5e-36 1 No_clan
Cotton_A_36686_CDS 129 242 125 246 PF07343.11 DUF1475 Family 5 122 236 156.0 1.3e-45 1 No_clan
Cotton_A_06774_CDS 13 104 13 105 PF09177.11 Syntaxin-6_N Domain 1 98 99 64.3 1.1e-17 1 No_clan
Cotton_A_16357_CDS 21 542 21 544 PF01676.18 Metalloenzyme Family 1 246 248 354.6 2.5e-106 1 CL0088
Cotton_A_16357_CDS 103 321 102 322 PF06415.13 iPGM_N Domain 2 214 215 201.7 9.5e-60 1 No_clan
Cotton_A_29390_CDS 72 193 71 196 PF00504.21 Chloroa_b-bind Family 2 123 161 113.9 1e-32 1 No_clan
Cotton_A_04344_CDS 14 124 14 127 PF16884.5 ADH_N_2 Family 1 105 108 76.6 1.2e-21 1 CL0296
Cotton_A_05768_CDS 180 323 180 324 PF03033.20 Glyco_transf_28 Family 1 138 139 118.1 3e-34 1 CL0113
Cotton_A_08685_CDS 30 89 30 90 PF04193.14 PQ-loop Repeat 1 60 61 53.8 1.2e-14 1 CL0141
Cotton_A_08685_CDS 151 199 142 202 PF04193.14 PQ-loop Repeat 10 58 61 52.1 4e-14 1 CL0141
Cotton_A_02361_CDS 24 355 14 356 PF07851.13 TMPIT Family 9 323 324 337.3 9e-101 1 No_clan
Cotton_A_02443_CDS 1 41 1 41 PF13976.6 gag_pre-integrs Domain 29 67 67 38.7 6.7e-10 1 No_clan
Cotton_A_30895_CDS 14 237 14 237 PF05764.13 YL1 Family 1 244 244 126.3 2e-36 1 No_clan
Cotton_A_30895_CDS 279 306 278 306 PF08265.11 YL1_C Domain 2 29 29 53.5 1.4e-14 1 No_clan
Cotton_A_06584_CDS 21 424 16 426 PF00999.21 Na_H_Exchanger Family 6 379 381 181.7 1.8e-53 1 CL0064
Cotton_A_20551_CDS 113 359 112 360 PF00454.27 PI3_PI4_kinase Family 2 249 250 157.7 4.5e-46 1 CL0016
Cotton_A_22547_CDS 756 837 741 837 PF16770.5 RTT107_BRCT_5 Domain 18 100 100 34.1 1.8e-08 1 CL0459
Cotton_A_30329_CDS 37 102 36 103 PF00013.29 KH_1 Domain 2 65 66 53.5 1.6e-14 1 CL0007
Cotton_A_30329_CDS 123 188 122 189 PF00013.29 KH_1 Domain 2 65 66 53.2 2e-14 1 CL0007
Cotton_A_30329_CDS 236 302 235 302 PF00013.29 KH_1 Domain 2 66 66 59.4 2.3e-16 1 CL0007
Cotton_A_14728_CDS 153 335 153 335 PF03031.18 NIF Family 1 156 156 92.0 3.1e-26 1 CL0137
Cotton_A_38495_CDS 23 71 22 73 PF16544.5 STAR_dimer Domain 2 50 53 46.5 1.9e-12 1 No_clan
Cotton_A_38495_CDS 138 184 134 193 PF00013.29 KH_1 Domain 5 43 66 24.3 2e-05 1 CL0007
Cotton_A_15606_CDS 45 126 44 129 PF01627.23 Hpt Family 2 82 85 26.8 4.5e-06 1 No_clan
Cotton_A_26802_CDS 57 383 57 390 PF00295.17 Glyco_hydro_28 Domain 1 320 325 297.9 7.9e-89 1 CL0268
Cotton_A_34315_CDS 4 199 1 201 PF01301.19 Glyco_hydro_35 Domain 111 314 316 161.1 5e-47 1 CL0058
Cotton_A_34315_CDS 208 280 208 280 PF17834.1 GHD Domain 1 72 72 78.5 2.9e-22 1 CL0369
Cotton_A_34840_CDS 117 320 116 320 PF14381.6 EDR1 Family 3 200 200 241.3 7.1e-72 1 CL0125
Cotton_A_34840_CDS 646 898 646 898 PF07714.17 Pkinase_Tyr Domain 1 259 259 221.9 8.3e-66 1 CL0016
Cotton_A_21866_CDS 21 89 19 100 PF00564.24 PB1 Domain 3 69 84 36.7 3e-09 1 CL0072
Cotton_A_21866_CDS 193 254 191 257 PF03108.15 DBD_Tnp_Mut Family 3 64 67 88.6 1.9e-25 1 CL0274
Cotton_A_21866_CDS 387 476 385 479 PF10551.9 MULE Domain 3 93 96 61.4 8.1e-17 1 CL0219
Cotton_A_21866_CDS 638 667 620 668 PF04434.17 SWIM Domain 3 39 40 35.3 6.4e-09 1 No_clan
Cotton_A_39980_CDS 79 164 78 165 PF12159.8 DUF3593 Family 2 87 88 129.6 3.3e-38 1 No_clan
Cotton_A_38064_CDS 19 82 1 82 PF00026.23 Asp Family 230 289 315 42.9 4.2e-11 1 CL0129
Cotton_A_17437_CDS 30 119 28 122 PF01248.26 Ribosomal_L7Ae Domain 3 92 95 91.1 2.8e-26 1 CL0101
Cotton_A_11117_CDS 64 138 58 139 PF03330.18 DPBB_1 Domain 7 82 83 34.1 2.4e-08 1 CL0199
Cotton_A_17130_CDS 38 190 37 190 PF04043.15 PMEI Domain 2 154 154 123.9 7e-36 1 No_clan
Cotton_A_28871_CDS 65 364 61 369 PF00389.30 2-Hacid_dh Domain 13 128 134 57.0 1.6e-15 1 CL0325
Cotton_A_28871_CDS 160 338 159 338 PF02826.19 2-Hacid_dh_C Domain 2 178 178 177.2 1.9e-52 1 CL0063
Cotton_A_07699_CDS 48 259 47 265 PF16113.5 ECH_2 Domain 2 214 334 256.6 4.2e-76 1 CL0127
Cotton_A_25190_CDS 272 409 272 409 PF00004.29 AAA Domain 1 132 132 129.1 1.4e-37 1 CL0023
Cotton_A_25190_CDS 431 469 431 493 PF17862.1 AAA_lid_3 Domain 1 39 45 47.2 1.4e-12 1 CL0671
Cotton_A_25190_CDS 473 518 465 518 PF09336.10 Vps4_C Domain 16 61 61 42.1 6.1e-11 1 CL0671
Cotton_A_27801_CDS 9 618 9 618 PF00012.20 HSP70 Family 1 599 599 871.0 3.5e-262 1 CL0108
Cotton_A_36439_CDS 199 290 199 290 PF01190.17 Pollen_Ole_e_I Family 1 99 99 88.2 3.7e-25 1 CL0287
Cotton_A_01506_CDS 155 204 155 204 PF13041.6 PPR_2 Repeat 1 50 50 32.9 5.5e-08 1 CL0020
Cotton_A_01506_CDS 223 251 222 253 PF12854.7 PPR_1 Repeat 2 30 34 29.9 3.4e-07 1 CL0020
Cotton_A_01506_CDS 261 310 261 310 PF13041.6 PPR_2 Repeat 1 50 50 56.0 3.2e-15 1 CL0020
Cotton_A_01506_CDS 331 380 331 380 PF13041.6 PPR_2 Repeat 1 50 50 65.7 3e-18 1 CL0020
Cotton_A_01506_CDS 398 428 397 430 PF12854.7 PPR_1 Repeat 2 32 34 31.6 9.9e-08 1 CL0020
Cotton_A_10152_CDS 6 103 6 104 PF03195.14 LOB Family 1 98 99 143.3 2.7e-42 1 No_clan
Cotton_A_21811_CDS 1 78 1 86 PF00407.19 Bet_v_1 Domain 1 78 151 47.1 2.3e-12 1 CL0209
Cotton_A_14634_CDS 141 209 139 209 PF00382.19 TFIIB Domain 3 71 71 29.6 5.2e-07 1 CL0065
Cotton_A_14634_CDS 235 305 235 305 PF00382.19 TFIIB Domain 1 71 71 46.0 4e-12 1 CL0065
Cotton_A_06831_CDS 38 430 37 433 PF00999.21 Na_H_Exchanger Family 2 378 381 91.7 4.1e-26 1 CL0064
Cotton_A_02022_CDS 33 168 33 169 PF00179.26 UQ_con Domain 1 139 140 127.7 2.4e-37 1 CL0208
Cotton_A_28869_CDS 37 99 36 109 PF08240.12 ADH_N Domain 2 63 109 37.3 2.1e-09 1 CL0296
Cotton_A_28869_CDS 202 313 202 313 PF13602.6 ADH_zinc_N_2 Domain 1 133 133 61.9 1.3e-16 1 CL0063
Cotton_A_02822_CDS 42 170 40 170 PF08240.12 ADH_N Domain 3 109 109 79.4 1.6e-22 1 CL0296
Cotton_A_02822_CDS 212 335 212 346 PF00107.26 ADH_zinc_N Family 1 119 130 78.3 4.9e-22 1 CL0063
Cotton_A_07066_CDS 10 114 9 115 PF00169.29 PH Domain 2 103 105 36.6 4.9e-09 1 CL0266
Cotton_A_07066_CDS 207 338 195 360 PF01852.19 START Domain 43 176 209 63.0 2.5e-17 1 CL0209
Cotton_A_07066_CDS 524 731 524 731 PF07059.12 DUF1336 Family 1 229 229 218.7 1e-64 1 No_clan
Cotton_A_24190_CDS 342 380 342 387 PF02213.16 GYF Domain 1 39 45 41.7 6.7e-11 1 CL0673
Cotton_A_39797_CDS 16 67 13 67 PF00010.26 HLH Domain 5 53 53 30.4 2.7e-07 1 No_clan
Cotton_A_38000_CDS 79 183 79 183 PF06426.14 SATase_N Domain 1 105 105 119.2 8.9e-35 1 No_clan
Cotton_A_38000_CDS 217 254 214 254 PF00132.24 Hexapep Repeat 1 36 36 21.0 0.00019 1 CL0536
Cotton_A_38000_CDS 263 297 263 298 PF00132.24 Hexapep Repeat 1 35 36 39.8 2.3e-10 1 CL0536
Cotton_A_18097_CDS 25 343 25 343 PF00332.18 Glyco_hydro_17 Domain 1 313 313 314.9 7.2e-94 1 CL0058
Cotton_A_18097_CDS 364 435 364 436 PF07983.13 X8 Domain 1 75 76 74.7 7e-21 1 No_clan
Cotton_A_09213_CDS 26 337 25 337 PF01263.20 Aldose_epim Family 2 301 301 280.8 1.3e-83 1 CL0103
Cotton_A_16830_CDS 2 101 2 104 PF03195.14 LOB Family 1 95 99 90.0 1.2e-25 1 No_clan
Cotton_A_29198_CDS 10 214 9 237 PF00069.25 Pkinase Domain 2 198 264 84.7 6.8e-24 1 CL0016
Cotton_A_31355_CDS 96 387 92 395 PF10250.9 O-FucT Family 6 301 336 145.3 3.6e-42 1 CL0113
Cotton_A_08085_CDS 70 301 70 301 PF02358.16 Trehalose_PPase Family 1 233 233 224.9 7.4e-67 1 CL0137
Cotton_A_14648_CDS 98 231 98 233 PF03813.14 Nrap Domain 1 150 152 124.4 3.9e-36 1 CL0260
Cotton_A_14648_CDS 238 368 236 368 PF17403.2 Nrap_D2 Domain 3 152 152 73.3 1.7e-20 1 No_clan
Cotton_A_14648_CDS 373 527 371 528 PF17404.2 Nrap_D3 Domain 3 159 160 129.0 1.6e-37 1 No_clan
Cotton_A_14648_CDS 554 726 543 727 PF17405.2 Nrap_D4 Domain 23 212 213 93.6 1.1e-26 1 CL0260
Cotton_A_14648_CDS 729 880 729 888 PF17406.2 Nrap_D5 Domain 1 152 162 154.8 1.6e-45 1 No_clan
Cotton_A_14648_CDS 896 1029 895 1031 PF17407.2 Nrap_D6 Domain 2 133 135 50.0 3.3e-13 1 No_clan
Cotton_A_16125_CDS 475 768 475 768 PF00069.25 Pkinase Domain 1 264 264 188.9 1e-55 1 CL0016
Cotton_A_05053_CDS 30 73 28 74 PF08263.12 LRRNT_2 Family 3 40 41 30.3 3.8e-07 1 No_clan
Cotton_A_05053_CDS 101 161 101 161 PF13855.6 LRR_8 Repeat 1 61 61 28.2 1.2e-06 1 CL0022
Cotton_A_05053_CDS 221 281 221 281 PF13855.6 LRR_8 Repeat 1 61 61 43.4 2.1e-11 1 CL0022
Cotton_A_05053_CDS 462 521 461 521 PF13855.6 LRR_8 Repeat 2 61 61 30.5 2.3e-07 1 CL0022
Cotton_A_05053_CDS 533 593 533 593 PF13855.6 LRR_8 Repeat 1 61 61 32.7 4.6e-08 1 CL0022
Cotton_A_05053_CDS 758 1017 752 1018 PF07714.17 Pkinase_Tyr Domain 8 258 259 136.0 1.3e-39 1 CL0016
Cotton_A_14285_CDS 76 345 72 347 PF07714.17 Pkinase_Tyr Domain 5 257 259 131.8 2.5e-38 1 CL0016
Cotton_A_29463_CDS 70 325 70 325 PF02485.21 Branch Family 1 247 247 265.9 3.2e-79 1 CL0110
Cotton_A_26330_CDS 32 103 31 103 PF14223.6 Retrotran_gag_2 Family 2 70 138 57.2 1.4e-15 1 CL0523
Cotton_A_00512_CDS 32 87 32 88 PF11961.8 DUF3475 Family 1 56 57 85.0 2.7e-24 1 No_clan
Cotton_A_00512_CDS 400 491 400 491 PF05003.12 DUF668 Family 1 89 89 108.4 1.9e-31 1 No_clan
Cotton_A_32011_CDS 12 116 10 122 PF00572.18 Ribosomal_L13 Family 3 118 125 35.9 7.4e-09 1 No_clan
Cotton_A_01146_CDS 56 269 56 270 PF07059.12 DUF1336 Family 1 228 229 229.7 4.4e-68 1 No_clan
Cotton_A_24097_CDS 304 332 304 333 PF13606.6 Ank_3 Repeat 1 30 31 18.8 0.0016 1 CL0465
Cotton_A_24097_CDS 343 401 333 404 PF12796.7 Ank_2 Repeat 28 80 83 30.1 5.3e-07 1 CL0465
Cotton_A_24097_CDS 446 506 426 508 PF12796.7 Ank_2 Repeat 28 81 83 30.8 3.2e-07 1 CL0465
Cotton_A_24097_CDS 549 618 549 629 PF12796.7 Ank_2 Repeat 1 60 83 44.9 1.3e-11 1 CL0465
Cotton_A_08662_CDS 296 333 293 335 PF13920.6 zf-C3HC4_3 Domain 4 45 50 31.0 1.6e-07 1 CL0229
Cotton_A_32181_CDS 162 416 162 417 PF12697.7 Abhydrolase_6 Domain 1 217 220 49.7 7.2e-13 1 CL0028
Cotton_A_08760_CDS 4 101 3 101 PF00438.20 S-AdoMet_synt_N Domain 2 99 99 145.0 9.2e-43 1 No_clan
Cotton_A_08760_CDS 117 238 117 238 PF02772.16 S-AdoMet_synt_M Domain 1 120 120 162.2 5.6e-48 1 No_clan
Cotton_A_08760_CDS 240 381 240 382 PF02773.16 S-AdoMet_synt_C Domain 1 137 138 209.2 2.1e-62 1 No_clan
Cotton_A_33470_CDS 300 361 297 416 PF07714.17 Pkinase_Tyr Domain 4 71 259 25.7 6e-06 1 CL0016
Cotton_A_39280_CDS 43 206 38 207 PF13439.6 Glyco_transf_4 Domain 6 169 170 89.0 3.3e-25 1 CL0113
Cotton_A_39280_CDS 226 378 219 379 PF00534.20 Glycos_transf_1 Family 13 171 172 95.2 3e-27 1 CL0113
Cotton_A_02751_CDS 64 154 63 156 PF00564.24 PB1 Domain 2 82 84 62.8 2.2e-17 1 CL0072
Cotton_A_02148_CDS 27 181 27 182 PF02518.26 HATPase_c Domain 1 111 112 57.7 1.4e-15 1 CL0025
Cotton_A_02148_CDS 184 687 184 696 PF00183.18 HSP90 Family 1 508 517 782.3 2.5e-235 1 No_clan
Cotton_A_37696_CDS 1 61 1 61 PF02798.20 GST_N Domain 15 76 76 55.6 5.2e-15 1 CL0172
Cotton_A_37696_CDS 103 177 72 177 PF00043.25 GST_C Domain 22 93 93 45.8 5.2e-12 1 CL0497
Cotton_A_15872_CDS 38 155 31 182 PF10457.9 MENTAL Domain 10 121 178 28.7 1e-06 1 No_clan
Cotton_A_31401_CDS 1 77 1 81 PF06552.12 TOM20_plant Family 50 126 187 121.0 4.8e-35 1 CL0020
Cotton_A_20776_CDS 9 127 4 143 PF00955.21 HCO3_cotransp Family 64 178 508 76.7 1.6e-21 1 CL0062
Cotton_A_20776_CDS 146 291 135 294 PF00955.21 HCO3_cotransp Family 274 409 508 60.2 1.7e-16 1 CL0062
Cotton_A_09142_CDS 252 396 252 398 PF01764.25 Lipase_3 Family 1 140 142 113.1 9.3e-33 1 CL0028
Cotton_A_38633_CDS 1 138 1 138 PF05514.11 HR_lesion Family 1 138 138 166.1 4.7e-49 1 CL0131
Cotton_A_35165_CDS 41 134 28 135 PF13426.7 PAS_9 Domain 11 103 104 61.8 6e-17 1 CL0183
Cotton_A_35165_CDS 252 349 249 351 PF13426.7 PAS_9 Domain 5 99 104 51.3 1.1e-13 1 CL0183
Cotton_A_22158_CDS 14 336 12 336 PF04997.12 RNA_pol_Rpb1_1 Domain 3 312 312 328.1 5.8e-98 1 No_clan
Cotton_A_22158_CDS 338 506 338 506 PF00623.20 RNA_pol_Rpb1_2 Domain 1 166 166 241.0 7.3e-72 1 No_clan
Cotton_A_22158_CDS 510 673 509 673 PF04983.18 RNA_pol_Rpb1_3 Domain 2 157 157 165.7 7.5e-49 1 No_clan
Cotton_A_22158_CDS 702 804 677 804 PF05000.17 RNA_pol_Rpb1_4 Domain 5 108 108 134.3 1.5e-39 1 No_clan
Cotton_A_22158_CDS 811 1402 811 1404 PF04998.17 RNA_pol_Rpb1_5 Domain 1 265 267 355.5 1.7e-106 1 No_clan
Cotton_A_22158_CDS 877 1062 877 1062 PF04992.14 RNA_pol_Rpb1_6 Domain 1 191 191 220.0 2.4e-65 1 No_clan
Cotton_A_22158_CDS 1147 1281 1147 1281 PF04990.12 RNA_pol_Rpb1_7 Domain 1 135 135 180.5 1.4e-53 1 No_clan
Cotton_A_22158_CDS 1523 1537 1523 1537 PF05001.13 RNA_pol_Rpb1_R Repeat 1 14 14 9.9 0.98 1 No_clan
Cotton_A_22158_CDS 1538 1551 1538 1551 PF05001.13 RNA_pol_Rpb1_R Repeat 1 14 14 13.2 0.086 1 No_clan
Cotton_A_22158_CDS 1552 1565 1552 1565 PF05001.13 RNA_pol_Rpb1_R Repeat 1 14 14 18.2 0.0024 1 No_clan
Cotton_A_22158_CDS 1566 1579 1566 1579 PF05001.13 RNA_pol_Rpb1_R Repeat 1 14 14 9.7 1.1 1 No_clan
Cotton_A_22158_CDS 1580 1593 1580 1593 PF05001.13 RNA_pol_Rpb1_R Repeat 1 14 14 14.7 0.03 1 No_clan
Cotton_A_22158_CDS 1594 1607 1594 1607 PF05001.13 RNA_pol_Rpb1_R Repeat 1 14 14 10.9 0.46 1 No_clan
Cotton_A_22158_CDS 1608 1621 1608 1621 PF05001.13 RNA_pol_Rpb1_R Repeat 1 14 14 11.0 0.44 1 No_clan
Cotton_A_22158_CDS 1622 1635 1622 1635 PF05001.13 RNA_pol_Rpb1_R Repeat 1 14 14 11.0 0.45 1 No_clan
Cotton_A_22158_CDS 1636 1649 1636 1649 PF05001.13 RNA_pol_Rpb1_R Repeat 1 14 14 13.3 0.08 1 No_clan
Cotton_A_22158_CDS 1650 1663 1650 1663 PF05001.13 RNA_pol_Rpb1_R Repeat 1 14 14 12.9 0.11 1 No_clan
Cotton_A_22158_CDS 1664 1677 1664 1677 PF05001.13 RNA_pol_Rpb1_R Repeat 1 14 14 9.1 1.7 1 No_clan
Cotton_A_22158_CDS 1678 1691 1678 1691 PF05001.13 RNA_pol_Rpb1_R Repeat 1 14 14 9.1 1.7 1 No_clan
Cotton_A_22158_CDS 1692 1705 1692 1705 PF05001.13 RNA_pol_Rpb1_R Repeat 1 14 14 16.2 0.0096 1 No_clan
Cotton_A_22158_CDS 1706 1719 1706 1719 PF05001.13 RNA_pol_Rpb1_R Repeat 1 14 14 9.1 1.7 1 No_clan
Cotton_A_22158_CDS 1720 1733 1720 1733 PF05001.13 RNA_pol_Rpb1_R Repeat 1 14 14 9.3 1.5 1 No_clan
Cotton_A_22158_CDS 1753 1766 1753 1766 PF05001.13 RNA_pol_Rpb1_R Repeat 1 14 14 12.3 0.17 1 No_clan
Cotton_A_22158_CDS 1767 1780 1767 1780 PF05001.13 RNA_pol_Rpb1_R Repeat 1 14 14 8.4 2.9 1 No_clan
Cotton_A_20415_CDS 17 577 16 578 PF03321.13 GH3 Family 2 526 527 636.2 4.7e-191 1 CL0378
Cotton_A_15300_CDS 28 191 28 191 PF04833.15 COBRA Family 1 165 165 184.3 1.6e-54 1 No_clan
Cotton_A_06683_CDS 57 526 57 533 PF00221.19 Lyase_aromatic Family 1 461 464 499.2 1e-149 1 No_clan
Cotton_A_24036_CDS 52 260 50 323 PF00069.25 Pkinase Domain 3 203 264 163.9 4.4e-48 1 CL0016
Cotton_A_03201_CDS 97 135 96 136 PF13854.6 Kelch_5 Repeat 2 41 42 26.8 3.8e-06 1 CL0186
Cotton_A_03201_CDS 542 749 541 750 PF00149.28 Metallophos Domain 2 203 204 116.3 2.6e-33 1 CL0163
Cotton_A_24028_CDS 13 113 7 121 PF06454.11 DUF1084 Family 20 116 273 48.9 5.8e-13 1 No_clan
Cotton_A_24028_CDS 158 310 138 316 PF06454.11 DUF1084 Family 124 267 273 37.0 2.4e-09 1 No_clan
Cotton_A_17459_CDS 14 76 2 77 PF01657.17 Stress-antifung Family 37 94 95 60.9 1.4e-16 1 No_clan
Cotton_A_12389_CDS 207 262 206 266 PF13855.6 LRR_8 Repeat 2 57 61 29.5 4.5e-07 1 CL0022
Cotton_A_12389_CDS 384 567 383 567 PF11721.8 Malectin Domain 2 165 165 140.2 6.4e-41 1 CL0202
Cotton_A_03818_CDS 188 227 175 232 PF00293.28 NUDIX Domain 29 66 131 28.8 1e-06 1 CL0261
Cotton_A_12278_CDS 99 510 99 510 PF01603.20 B56 Family 1 415 415 615.2 5.8e-185 1 CL0020
Cotton_A_34072_CDS 119 403 119 403 PF00069.25 Pkinase Domain 1 264 264 233.7 2.3e-69 1 CL0016
Cotton_A_06315_CDS 2 230 2 230 PF12481.8 DUF3700 Domain 1 228 228 382.3 6.5e-115 1 CL0052
Cotton_A_25719_CDS 15 196 4 209 PF15251.6 DUF4588 Family 53 222 252 29.2 7.4e-07 1 No_clan
Cotton_A_05576_CDS 70 123 69 123 PF14416.6 PMR5N Domain 2 53 53 73.8 9.6e-21 1 No_clan
Cotton_A_05576_CDS 124 413 124 414 PF13839.6 PC-Esterase Family 1 282 283 313.1 2.2e-93 1 CL0264
Cotton_A_34865_CDS 119 242 119 243 PF00107.26 ADH_zinc_N Family 1 129 130 69.7 2.2e-19 1 CL0063
Cotton_A_38586_CDS 54 152 51 164 PF10607.9 CLTH Domain 6 103 148 37.5 2e-09 1 No_clan
Cotton_A_10210_CDS 220 478 217 480 PF00069.25 Pkinase Domain 4 259 264 151.1 3.5e-44 1 CL0016
Cotton_A_32502_CDS 824 866 822 870 PF13920.6 zf-C3HC4_3 Domain 3 45 50 35.2 8.2e-09 1 CL0229
Cotton_A_29237_CDS 159 398 158 398 PF00931.22 NB-ARC Domain 2 252 252 239.6 2.9e-71 1 CL0023
Cotton_A_29237_CDS 537 596 537 597 PF13855.6 LRR_8 Repeat 1 60 61 40.5 1.7e-10 1 CL0022
Cotton_A_04148_CDS 94 130 93 131 PF08263.12 LRRNT_2 Family 2 40 41 32.6 7.1e-08 1 No_clan
Cotton_A_04148_CDS 185 205 185 206 PF00560.33 LRR_1 Repeat 1 21 23 10.4 0.87 1 CL0022
Cotton_A_04148_CDS 253 274 253 275 PF00560.33 LRR_1 Repeat 1 22 23 11.7 0.33 1 CL0022
Cotton_A_04148_CDS 415 678 412 700 PF00069.25 Pkinase Domain 4 260 264 133.3 9.8e-39 1 CL0016
Cotton_A_17262_CDS 28 378 16 379 PF03321.13 GH3 Family 35 367 527 358.0 9.8e-107 1 CL0378
Cotton_A_17262_CDS 379 517 377 518 PF03321.13 GH3 Family 394 526 527 114.2 7.5e-33 1 CL0378
Cotton_A_29637_CDS 13 199 13 199 PF00316.20 FBPase Domain 1 189 189 260.7 5.9e-78 1 CL0171
Cotton_A_28993_CDS 79 217 78 276 PF13360.6 PQQ_2 Domain 2 106 237 32.5 6.1e-08 1 CL0186
Cotton_A_28993_CDS 421 499 419 512 PF13360.6 PQQ_2 Domain 3 81 237 24.9 1.3e-05 1 CL0186
Cotton_A_20480_CDS 82 322 80 324 PF01709.20 Transcrip_reg Family 3 238 240 215.5 7.4e-64 1 No_clan
Cotton_A_01303_CDS 28 440 14 456 PF00067.22 p450 Domain 20 439 463 292.9 4e-87 1 No_clan
Cotton_A_22726_CDS 50 164 19 164 PF00583.25 Acetyltransf_1 Family 28 117 117 59.1 4.6e-16 1 CL0257
Cotton_A_20750_CDS 2 116 1 116 PF00416.22 Ribosomal_S13 Family 15 128 128 177.6 1.3e-52 1 CL0303
Cotton_A_32790_CDS 2 82 1 85 PF07714.17 Pkinase_Tyr Domain 77 154 259 55.9 3.7e-15 1 CL0016
Cotton_A_35573_CDS 55 396 51 396 PF00278.22 Orn_DAP_Arg_deC Domain 5 98 98 84.8 3.7e-24 1 No_clan
Cotton_A_35573_CDS 58 305 56 305 PF02784.16 Orn_Arg_deC_N Domain 3 247 247 167.0 4.7e-49 1 CL0036
Cotton_A_05506_CDS 1 425 1 433 PF00067.22 p450 Domain 37 454 463 321.3 9.5e-96 1 No_clan
Cotton_A_31016_CDS 20 111 4 126 PF11145.8 DUF2921 Family 301 402 894 64.4 5e-18 1 No_clan
Cotton_A_31016_CDS 176 233 114 234 PF14510.6 ABC_trans_N Domain 30 80 81 38.7 1.2e-09 1 No_clan
Cotton_A_31016_CDS 259 439 259 443 PF00005.27 ABC_tran Domain 1 133 137 59.4 5.1e-16 1 CL0023
Cotton_A_33743_CDS 91 333 88 337 PF12708.7 Pectate_lyase_3 Family 4 213 215 35.9 6.7e-09 1 CL0268
Cotton_A_07685_CDS 1 99 1 99 PF04618.12 HD-ZIP_N Domain 1 110 110 102.2 2.1e-29 1 No_clan
Cotton_A_07685_CDS 130 184 129 185 PF00046.29 Homeodomain Domain 2 56 57 57.7 7.8e-16 1 CL0123
Cotton_A_07685_CDS 186 220 186 221 PF02183.18 HALZ Coiled-coil 1 42 43 40.2 2.9e-10 1 No_clan
Cotton_A_31844_CDS 38 101 15 102 PF00887.19 ACBP Domain 19 82 85 63.0 2.2e-17 1 CL0632
Cotton_A_31844_CDS 186 227 186 228 PF01344.25 Kelch_1 Repeat 1 42 46 36.1 3.6e-09 1 CL0186
Cotton_A_31844_CDS 298 347 297 347 PF13418.6 Kelch_4 Repeat 2 49 49 34.1 2e-08 1 CL0186
Cotton_A_31844_CDS 360 406 359 408 PF13415.6 Kelch_3 Domain 2 47 49 40.3 2.6e-10 1 CL0186
Cotton_A_21410_CDS 62 104 47 105 PF04145.15 Ctr Family 105 147 148 33.8 4.7e-08 1 No_clan
Cotton_A_10701_CDS 326 369 325 369 PF13639.6 zf-RING_2 Domain 2 44 44 30.4 3.5e-07 1 CL0229
Cotton_A_10701_CDS 419 465 419 466 PF00628.29 PHD Domain 1 51 52 35.4 7.4e-09 1 CL0390
Cotton_A_13258_CDS 36 179 34 179 PF10604.9 Polyketide_cyc2 Family 3 143 143 81.1 9.4e-23 1 CL0209
Cotton_A_17156_CDS 100 152 100 152 PF02861.20 Clp_N Family 1 53 53 32.0 9.6e-08 1 No_clan
Cotton_A_17156_CDS 186 226 180 229 PF02861.20 Clp_N Family 9 50 53 26.2 6.4e-06 1 No_clan
Cotton_A_29879_CDS 41 135 15 150 PF00179.26 UQ_con Domain 24 116 140 56.5 2.2e-15 1 CL0208
Cotton_A_16259_CDS 1 59 1 59 PF04560.20 RNA_pol_Rpb2_7 Domain 8 75 87 45.5 7.5e-12 1 No_clan
Cotton_A_33687_CDS 105 148 104 149 PF13639.6 zf-RING_2 Domain 2 43 44 40.7 2.2e-10 1 CL0229
Cotton_A_06650_CDS 2 32 1 32 PF14144.6 DOG1 Family 48 77 77 41.4 1.2e-10 1 No_clan
Cotton_A_18638_CDS 131 232 131 241 PF00011.21 HSP20 Family 1 91 102 72.2 3.1e-20 1 CL0190
Cotton_A_16594_CDS 10 115 9 117 PF00635.26 Motile_Sperm Domain 2 107 109 98.0 2.7e-28 1 CL0556
Cotton_A_12329_CDS 5 93 5 115 PF18052.1 Rx_N Domain 1 84 93 89.7 1.1e-25 1 No_clan
Cotton_A_12329_CDS 162 415 161 416 PF00931.22 NB-ARC Domain 2 251 252 206.0 5.3e-61 1 CL0023
Cotton_A_32630_CDS 63 173 61 174 PF01981.16 PTH2 Family 3 116 117 77.5 9.3e-22 1 CL0305
Cotton_A_17243_CDS 127 411 127 411 PF00069.25 Pkinase Domain 1 264 264 225.1 1e-66 1 CL0016
Cotton_A_28333_CDS 91 599 90 600 PF03141.16 Methyltransf_29 Family 2 505 506 735.7 2.3e-221 1 CL0063
Cotton_A_32789_CDS 40 380 40 381 PF12819.7 Malectin_like Domain 1 335 336 140.7 6.2e-41 1 CL0202
Cotton_A_32789_CDS 490 751 486 755 PF07714.17 Pkinase_Tyr Domain 5 255 259 162.1 1.5e-47 1 CL0016
Cotton_A_20681_CDS 208 253 208 253 PF10533.9 Plant_zn_clust Domain 1 49 49 64.2 8e-18 1 No_clan
Cotton_A_20681_CDS 257 314 256 314 PF03106.15 WRKY Domain 2 59 59 92.7 1.2e-26 1 CL0274
Cotton_A_08164_CDS 124 173 123 174 PF00847.20 AP2 Domain 2 53 54 46.7 2.7e-12 1 CL0081
Cotton_A_27242_CDS 326 410 326 411 PF00439.25 Bromodomain Domain 1 83 84 69.8 1.5e-19 1 No_clan
Cotton_A_27242_CDS 504 565 503 566 PF17035.5 BET Domain 2 63 64 83.5 8.6e-24 1 CL0665
Cotton_A_11875_CDS 55 197 55 197 PF01565.23 FAD_binding_4 Domain 1 139 139 73.0 1.9e-20 1 CL0077
Cotton_A_11875_CDS 229 506 229 506 PF09265.10 Cytokin-bind Domain 1 281 281 364.3 4.1e-109 1 CL0277
Cotton_A_00416_CDS 123 158 123 165 PF01370.21 Epimerase Family 1 36 241 27.9 1.4e-06 1 CL0063
Cotton_A_00416_CDS 166 358 157 360 PF16363.5 GDP_Man_Dehyd Domain 120 330 332 123.7 1.1e-35 1 CL0063
Cotton_A_17665_CDS 1 129 1 138 PF00305.19 Lipoxygenase Domain 388 516 674 186.7 7.1e-55 1 No_clan
Cotton_A_17665_CDS 136 188 130 188 PF00305.19 Lipoxygenase Domain 622 674 674 46.9 1.4e-12 1 No_clan
Cotton_A_14059_CDS 59 122 38 139 PF16206.5 Mon2_C Family 77 140 785 30.1 1.4e-07 1 No_clan
Cotton_A_09985_CDS 14 307 14 307 PF07065.14 D123 Family 1 306 306 321.9 3.8e-96 1 CL0179
Cotton_A_25199_CDS 47 119 47 144 PF01627.23 Hpt Family 1 71 85 23.5 4.8e-05 1 No_clan
Cotton_A_10448_CDS 212 278 212 281 PF00076.22 RRM_1 Domain 1 66 70 71.4 4.1e-20 1 CL0221
Cotton_A_15474_CDS 17 141 17 141 PF02365.15 NAM Family 1 126 126 135.7 1.6e-39 1 No_clan
Cotton_A_40258_CDS 50 238 49 238 PF00033.19 Cytochrome_B Domain 2 189 189 276.8 8.5e-83 1 CL0328
Cotton_A_26766_CDS 59 135 24 140 PF02466.19 Tim17 Family 38 110 111 38.4 1.3e-09 1 No_clan
Cotton_A_00832_CDS 32 318 32 318 PF07651.16 ANTH Domain 1 277 277 297.8 5.7e-89 1 CL0009
Cotton_A_29789_CDS 601 649 601 649 PF02042.15 RWP-RK Family 1 49 49 91.2 2.8e-26 1 No_clan
Cotton_A_29789_CDS 890 968 889 970 PF00564.24 PB1 Domain 2 81 84 62.5 2.6e-17 1 CL0072
Cotton_A_02157_CDS 12 591 7 601 PF05691.12 Raffinose_syn Family 5 594 750 848.5 3.2e-255 1 CL0058
Cotton_A_17747_CDS 65 199 62 202 PF00153.27 Mito_carr Family 4 93 97 59.9 1.8e-16 1 No_clan
Cotton_A_17747_CDS 211 310 208 313 PF00153.27 Mito_carr Family 4 93 97 45.2 6.4e-12 1 No_clan
Cotton_A_17747_CDS 325 413 321 415 PF00153.27 Mito_carr Family 6 95 97 64.3 7.3e-18 1 No_clan
Cotton_A_07412_CDS 29 195 29 196 PF06884.11 DUF1264 Family 1 170 171 240.1 1e-71 1 No_clan
Cotton_A_32925_CDS 18 64 17 65 PF01466.19 Skp1 Domain 2 47 48 45.1 7.7e-12 1 No_clan
Cotton_A_06038_CDS 46 71 44 71 PF01239.22 PPTA Repeat 3 28 28 25.7 6.3e-06 1 CL0020
Cotton_A_06038_CDS 90 117 90 117 PF01239.22 PPTA Repeat 1 28 28 35.9 4.1e-09 1 CL0020
Cotton_A_06038_CDS 125 151 125 152 PF01239.22 PPTA Repeat 1 27 28 26.6 3.4e-06 1 CL0020
Cotton_A_06038_CDS 160 186 160 187 PF01239.22 PPTA Repeat 1 27 28 39.9 2.2e-10 1 CL0020
Cotton_A_06038_CDS 206 233 206 233 PF01239.22 PPTA Repeat 1 28 28 26.4 4.1e-06 1 CL0020
Cotton_A_30033_CDS 31 145 30 146 PF07732.15 Cu-oxidase_3 Domain 2 118 119 138.2 1.2e-40 1 CL0026
Cotton_A_30033_CDS 157 308 156 308 PF00394.22 Cu-oxidase Domain 2 159 159 132.6 1.3e-38 1 CL0026
Cotton_A_30033_CDS 413 549 412 551 PF07731.14 Cu-oxidase_2 Domain 2 135 137 136.2 6e-40 1 CL0026
Cotton_A_18459_CDS 49 205 48 205 PF07800.12 DUF1644 Family 2 168 168 227.8 7.7e-68 1 CL0229
Cotton_A_18243_CDS 1 140 1 140 PF00314.17 Thaumatin Domain 68 214 214 182.1 1.1e-53 1 CL0293
Cotton_A_00896_CDS 25 120 23 120 PF08551.10 DUF1751 Domain 4 99 99 102.4 1.6e-29 1 CL0207
Cotton_A_10413_CDS 40 114 40 139 PF00917.26 MATH Domain 1 72 113 26.2 6.6e-06 1 CL0389
Cotton_A_31044_CDS 13 80 12 80 PF01423.22 LSM Domain 2 67 67 73.3 9.2e-21 1 CL0527
Cotton_A_00914_CDS 48 318 47 318 PF04190.13 DUF410 Family 2 255 255 244.1 1.9e-72 1 No_clan
Cotton_A_21219_CDS 77 213 77 215 PF01565.23 FAD_binding_4 Domain 1 136 139 88.1 4.1e-25 1 CL0077
Cotton_A_21219_CDS 467 525 467 525 PF08031.12 BBE Domain 1 46 46 71.7 4e-20 1 CL0277
Cotton_A_11333_CDS 14 194 10 207 PF01852.19 START Domain 12 194 209 46.9 2.1e-12 1 CL0209
Cotton_A_30598_CDS 266 626 265 626 PF03514.14 GRAS Family 2 374 374 306.2 2.9e-91 1 CL0063
Cotton_A_08646_CDS 13 113 12 114 PF02036.17 SCP2 Family 2 97 101 69.6 2.5e-19 1 CL0311
Cotton_A_38214_CDS 38 248 36 248 PF00230.20 MIP Family 5 227 227 213.0 4.6e-63 1 No_clan
Cotton_A_13712_CDS 2 242 1 256 PF00067.22 p450 Domain 210 450 463 208.2 2e-61 1 No_clan
Cotton_A_39307_CDS 146 264 145 266 PF02893.20 GRAM Domain 2 112 114 89.2 1.6e-25 1 CL0266
Cotton_A_26314_CDS 23 155 21 157 PF05903.14 Peptidase_C97 Domain 4 149 151 161.7 1.1e-47 1 CL0125
Cotton_A_31264_CDS 12 61 12 61 PF13041.6 PPR_2 Repeat 1 50 50 58.7 4.6e-16 1 CL0020
Cotton_A_31264_CDS 83 131 82 131 PF13041.6 PPR_2 Repeat 2 50 50 49.3 4e-13 1 CL0020
Cotton_A_31264_CDS 152 193 152 193 PF13041.6 PPR_2 Repeat 1 42 50 48.5 7e-13 1 CL0020
Cotton_A_31264_CDS 222 272 222 272 PF13041.6 PPR_2 Repeat 1 50 50 49.4 3.7e-13 1 CL0020
Cotton_A_31264_CDS 297 324 296 326 PF01535.20 PPR Family 2 29 31 15.9 0.011 1 CL0020
Cotton_A_11370_CDS 68 128 66 128 PF00046.29 Homeodomain Domain 3 57 57 61.6 4.6e-17 1 CL0123
Cotton_A_26907_CDS 1 116 1 147 PF14009.6 DUF4228 Family 1 110 179 84.3 1.4e-23 1 No_clan
Cotton_A_25296_CDS 58 117 55 117 PF05498.11 RALF Family 4 65 65 90.8 7.8e-26 1 No_clan
Cotton_A_10855_CDS 243 288 241 289 PF00010.26 HLH Domain 4 52 53 32.6 5.5e-08 1 No_clan
Cotton_A_38558_CDS 13 91 5 94 PF02519.14 Auxin_inducible Family 2 74 90 43.8 2.1e-11 1 No_clan
Cotton_A_23811_CDS 123 203 120 218 PF00295.17 Glyco_hydro_28 Domain 5 81 325 34.6 1.1e-08 1 CL0268
Cotton_A_23811_CDS 242 460 233 467 PF00295.17 Glyco_hydro_28 Domain 90 308 325 238.5 9.4e-71 1 CL0268
Cotton_A_41288_CDS 1 114 1 116 PF08284.11 RVP_2 Domain 21 134 136 100.4 6.6e-29 1 CL0129
Cotton_A_41288_CDS 117 274 115 275 PF00078.27 RVT_1 Family 3 221 222 99.8 1.5e-28 1 CL0027
Cotton_A_41288_CDS 338 392 338 395 PF17919.1 RT_RNaseH_2 Domain 1 60 100 53.2 2.3e-14 1 CL0219
Cotton_A_15978_CDS 152 237 114 245 PF00782.20 DSPc Domain 33 117 133 46.4 3.3e-12 1 CL0031
Cotton_A_15978_CDS 259 341 258 345 PF16561.5 AMPK1_CBM Family 3 81 85 67.5 9.1e-19 1 CL0369
Cotton_A_40354_CDS 777 870 774 890 PF07766.13 LETM1 Family 4 93 268 36.6 3.1e-09 1 No_clan
Cotton_A_16041_CDS 28 297 24 298 PF14576.6 SEO_N Family 5 286 287 295.0 4.9e-88 1 No_clan
Cotton_A_16041_CDS 454 635 453 646 PF14577.6 SEO_C Family 2 184 232 193.9 2.7e-57 1 No_clan
Cotton_A_35739_CDS 93 148 93 149 PF00046.29 Homeodomain Domain 1 56 57 62.9 1.8e-17 1 CL0123
Cotton_A_35739_CDS 277 496 276 496 PF01852.19 START Domain 2 209 209 196.5 3.3e-58 1 CL0209
Cotton_A_06144_CDS 143 356 142 364 PF04765.13 DUF616 Family 2 215 314 299.5 2.7e-89 1 No_clan
Cotton_A_00292_CDS 43 185 41 185 PF03208.19 PRA1 Family 3 143 143 159.9 2.9e-47 1 No_clan
Cotton_A_06699_CDS 68 111 67 111 PF13639.6 zf-RING_2 Domain 2 44 44 47.1 2.2e-12 1 CL0229
Cotton_A_30972_CDS 198 265 198 267 PF07258.14 COMM_domain Domain 1 70 72 32.7 6.1e-08 1 No_clan
Cotton_A_32598_CDS 641 707 640 709 PF04564.15 U-box Domain 4 69 73 38.5 9.9e-10 1 CL0229
Cotton_A_26643_CDS 123 296 51 296 PF07059.12 DUF1336 Family 74 229 229 133.9 9e-39 1 No_clan
Cotton_A_20184_CDS 175 297 175 298 PF08241.12 Methyltransf_11 Domain 1 95 96 55.5 7e-15 1 CL0063
Cotton_A_18496_CDS 61 286 42 291 PF00481.21 PP2C Family 29 250 258 116.0 2.2e-33 1 CL0238
Cotton_A_19411_CDS 105 282 105 283 PF02194.15 PXA Family 1 181 182 129.5 1.3e-37 1 No_clan
Cotton_A_19411_CDS 558 662 554 662 PF00787.24 PX Domain 6 113 113 59.1 3.7e-16 1 No_clan
Cotton_A_19411_CDS 861 1016 861 1017 PF08628.12 Nexin_C Family 1 111 112 99.7 1.4e-28 1 No_clan
Cotton_A_04909_CDS 50 191 50 194 PF03169.15 OPT Family 1 132 616 117.7 5.8e-34 1 No_clan
Cotton_A_04909_CDS 204 695 192 697 PF03169.15 OPT Family 157 614 616 371.0 1.2e-110 1 No_clan
Cotton_A_09262_CDS 113 149 111 149 PF00400.32 WD40 Repeat 3 38 38 26.6 7.5e-06 1 CL0186
Cotton_A_09262_CDS 155 191 154 195 PF00400.32 WD40 Repeat 2 36 38 14.1 0.066 1 CL0186
Cotton_A_09262_CDS 199 237 197 237 PF00400.32 WD40 Repeat 3 38 38 27.3 4.6e-06 1 CL0186
Cotton_A_09262_CDS 242 278 241 279 PF00400.32 WD40 Repeat 2 37 38 37.1 3.5e-09 1 CL0186
Cotton_A_09262_CDS 342 785 341 786 PF04053.14 Coatomer_WDAD Family 2 444 445 543.9 3.2e-163 1 CL0186
Cotton_A_37304_CDS 48 88 42 97 PF13432.6 TPR_16 Family 13 58 68 16.4 0.011 1 CL0020
Cotton_A_37304_CDS 668 711 660 711 PF13432.6 TPR_16 Family 22 68 68 22.6 0.00013 1 CL0020
Cotton_A_13117_CDS 102 215 102 215 PF03479.15 DUF296 Domain 1 107 107 100.2 7.9e-29 1 CL0615
Cotton_A_15308_CDS 171 288 160 290 PF13537.6 GATase_7 Domain 10 121 123 81.4 4.8e-23 1 CL0052
Cotton_A_15308_CDS 366 461 347 467 PF00156.27 Pribosyltran Domain 31 119 159 34.0 1.9e-08 1 CL0533
Cotton_A_38429_CDS 3 144 2 153 PF05903.14 Peptidase_C97 Domain 2 139 151 134.3 2.9e-39 1 CL0125
Cotton_A_07290_CDS 224 490 219 490 PF07714.17 Pkinase_Tyr Domain 6 259 259 179.6 6.6e-53 1 CL0016
Cotton_A_25480_CDS 11 95 10 139 PF10358.9 NT-C2 Family 2 88 146 35.7 6.2e-09 1 CL0154
Cotton_A_12512_CDS 9 70 8 71 PF13499.6 EF-hand_7 Domain 2 69 71 48.7 7.9e-13 1 CL0220
Cotton_A_12512_CDS 86 148 85 149 PF13499.6 EF-hand_7 Domain 2 70 71 51.8 8.5e-14 1 CL0220
Cotton_A_09926_CDS 46 649 46 650 PF00995.23 Sec1 Family 1 574 575 381.7 9.4e-114 1 No_clan
Cotton_A_23893_CDS 12 41 11 41 PF01535.20 PPR Family 2 31 31 19.3 0.00095 1 CL0020
Cotton_A_23893_CDS 43 92 43 92 PF13041.6 PPR_2 Repeat 1 50 50 46.6 2.8e-12 1 CL0020
Cotton_A_23893_CDS 113 159 113 162 PF13041.6 PPR_2 Repeat 1 47 50 30.9 2.3e-07 1 CL0020
Cotton_A_23893_CDS 228 275 228 277 PF13041.6 PPR_2 Repeat 1 48 50 51.3 9.9e-14 1 CL0020
Cotton_A_23893_CDS 302 346 301 347 PF13041.6 PPR_2 Repeat 5 49 50 32.4 7.9e-08 1 CL0020
Cotton_A_31118_CDS 90 168 90 184 PF02542.16 YgbB Family 1 87 155 67.7 1.4e-18 1 No_clan
Cotton_A_32255_CDS 93 193 92 194 PF00044.24 Gp_dh_N Domain 2 100 101 128.5 1e-37 1 CL0063
Cotton_A_32255_CDS 246 403 246 403 PF02800.20 Gp_dh_C Domain 1 158 158 232.0 2.4e-69 1 CL0139
Cotton_A_34294_CDS 41 148 38 149 PF13947.6 GUB_WAK_bind Domain 4 105 106 29.4 1.1e-06 1 No_clan
Cotton_A_34294_CDS 341 610 338 610 PF07714.17 Pkinase_Tyr Domain 4 259 259 167.5 3.3e-49 1 CL0016
Cotton_A_04208_CDS 4 105 2 105 PF02535.22 Zip Family 237 333 333 66.5 2.3e-18 1 CL0184
Cotton_A_32917_CDS 31 86 29 87 PF00403.26 HMA Domain 3 61 62 47.0 2.5e-12 1 No_clan
Cotton_A_09478_CDS 78 446 77 446 PF00285.21 Citrate_synt Domain 2 361 361 450.1 5.6e-135 1 No_clan
Cotton_A_00472_CDS 1 99 1 99 PF00685.27 Sulfotransfer_1 Domain 179 267 267 68.1 8.5e-19 1 CL0023
Cotton_A_19187_CDS 1523 1556 1522 1556 PF13831.6 PHD_2 Family 2 36 36 43.7 1.4e-11 1 CL0390
Cotton_A_19187_CDS 1852 1959 1851 1960 PF00856.28 SET Family 3 168 169 66.9 2.8e-18 1 No_clan
Cotton_A_15259_CDS 14 136 4 146 PF00069.25 Pkinase Domain 137 254 264 48.3 8.2e-13 1 CL0016
Cotton_A_22736_CDS 98 198 81 199 PF00083.24 Sugar_tr Family 215 313 452 31.0 1.2e-07 1 CL0015
Cotton_A_18480_CDS 6 273 3 276 PF03059.16 NAS Family 6 273 276 433.5 3e-130 1 CL0063
Cotton_A_36896_CDS 81 365 78 368 PF10250.9 O-FucT Family 6 321 336 39.0 7.8e-10 1 CL0113
Cotton_A_35429_CDS 113 303 111 304 PF01545.21 Cation_efflux Family 3 198 199 114.0 7.4e-33 1 No_clan
Cotton_A_35429_CDS 310 384 308 385 PF16916.5 ZT_dimer Domain 3 77 79 49.5 3.6e-13 1 No_clan
Cotton_A_15000_CDS 106 151 105 151 PF00301.20 Rubredoxin Domain 2 47 47 64.8 5.2e-18 1 CL0045
Cotton_A_07497_CDS 13 65 12 66 PF00584.20 SecE Family 2 54 55 53.8 1.3e-14 1 No_clan
Cotton_A_37492_CDS 135 722 125 722 PF05557.13 MAD Coiled-coil 35 661 661 90.8 7e-26 1 No_clan
Cotton_A_12645_CDS 23 113 22 113 PF00428.19 Ribosomal_60s Family 2 88 88 99.7 1.1e-28 1 No_clan
Cotton_A_12153_CDS 2 86 2 117 PF09750.9 DRY_EERY Domain 1 89 135 75.3 5.2e-21 1 No_clan
Cotton_A_12153_CDS 169 217 168 218 PF01805.20 Surp Family 2 51 53 43.6 2.2e-11 1 No_clan
Cotton_A_12153_CDS 375 420 374 424 PF01805.20 Surp Family 2 48 53 36.2 4.5e-09 1 No_clan
Cotton_A_02038_CDS 29 318 29 327 PF00124.19 Photo_RC Family 1 256 260 253.8 1.5e-75 1 No_clan
Cotton_A_10916_CDS 90 115 90 116 PF13912.6 zf-C2H2_6 Domain 1 26 27 50.0 2e-13 1 CL0361
Cotton_A_10916_CDS 143 166 142 168 PF13912.6 zf-C2H2_6 Domain 2 25 27 41.7 7.7e-11 1 CL0361
Cotton_A_04266_CDS 27 85 25 85 PF00046.29 Homeodomain Domain 3 57 57 58.6 4.1e-16 1 CL0123
Cotton_A_04266_CDS 166 343 165 360 PF01852.19 START Domain 2 177 209 135.8 1.3e-39 1 CL0209
Cotton_A_04266_CDS 676 825 675 825 PF08670.11 MEKHLA Domain 2 143 143 153.9 2.5e-45 1 CL0183
Cotton_A_38414_CDS 37 183 37 184 PF03018.14 Dirigent Family 1 147 148 121.1 3.2e-35 1 CL0650
Cotton_A_11390_CDS 32 337 31 346 PF00909.21 Ammonium_transp Family 2 306 399 185.7 1.1e-54 1 No_clan
Cotton_A_27219_CDS 216 331 215 332 PF04059.12 RRM_2 Family 2 96 97 80.5 7.6e-23 1 CL0221
Cotton_A_29563_CDS 144 214 143 215 PF00173.28 Cyt-b5 Domain 2 73 74 74.7 4.9e-21 1 No_clan
Cotton_A_38976_CDS 37 127 33 128 PF01657.17 Stress-antifung Family 6 94 95 70.2 1.8e-19 1 No_clan
Cotton_A_02599_CDS 25 135 25 157 PF00561.20 Abhydrolase_1 Domain 1 107 257 62.3 5.4e-17 1 CL0028
Cotton_A_13053_CDS 268 304 267 304 PF00400.32 WD40 Repeat 2 38 38 23.5 6.9e-05 1 CL0186
Cotton_A_08518_CDS 35 490 35 497 PF00067.22 p450 Domain 1 456 463 338.7 5.2e-101 1 No_clan
Cotton_A_11037_CDS 43 128 43 129 PF14712.6 Snapin_Pallidin Family 1 89 90 67.7 9.3e-19 1 No_clan
Cotton_A_31915_CDS 11 79 11 79 PF02672.15 CP12 Family 1 70 70 93.8 8.1e-27 1 No_clan
Cotton_A_04647_CDS 127 173 126 174 PF13920.6 zf-C3HC4_3 Domain 2 49 50 45.2 6.2e-12 1 CL0229
Cotton_A_19959_CDS 33 70 32 71 PF08263.12 LRRNT_2 Family 3 40 41 33.3 4.5e-08 1 No_clan
Cotton_A_19959_CDS 296 346 295 347 PF13855.6 LRR_8 Repeat 2 52 61 30.2 2.8e-07 1 CL0022
Cotton_A_19959_CDS 635 900 634 902 PF00069.25 Pkinase Domain 2 260 264 164.1 4.1e-48 1 CL0016
Cotton_A_00065_CDS 45 347 45 348 PF17781.1 RPN1_RPN2_N Domain 1 308 309 418.4 1.9e-125 1 No_clan
Cotton_A_00065_CDS 444 479 444 480 PF01851.22 PC_rep Repeat 1 34 35 26.5 5.8e-06 1 CL0020
Cotton_A_00065_CDS 831 884 831 884 PF18051.1 RPN1_C Domain 1 54 54 106.5 5e-31 1 No_clan
Cotton_A_28065_CDS 45 113 43 115 PF01363.21 FYVE Domain 3 66 68 65.3 3.9e-18 1 CL0390
Cotton_A_28065_CDS 455 699 438 709 PF00118.24 Cpn60_TCP1 Family 136 370 491 112.5 2e-32 1 No_clan
Cotton_A_28065_CDS 1597 1763 1589 1767 PF01504.18 PIP5K Family 10 168 274 118.5 3e-34 1 CL0016
Cotton_A_04839_CDS 468 495 468 495 PF00614.22 PLDc Family 1 28 28 35.2 8.7e-09 1 CL0479
Cotton_A_04839_CDS 812 927 752 929 PF13091.6 PLDc_2 Domain 48 123 133 31.8 1.1e-07 1 CL0479
Cotton_A_29645_CDS 1 91 1 92 PF10250.9 O-FucT Family 243 335 336 66.0 4.7e-18 1 CL0113
Cotton_A_20566_CDS 135 170 135 170 PF05553.11 DUF761 Family 1 36 36 56.3 1.6e-15 1 No_clan
Cotton_A_15094_CDS 104 125 100 129 PF00432.21 Prenyltrans Repeat 6 27 44 7.5 3.4 1 CL0059
Cotton_A_15094_CDS 133 341 125 376 PF13249.6 SQHop_cyclase_N Domain 59 254 291 107.8 5.1e-31 1 CL0059
Cotton_A_15094_CDS 387 724 386 725 PF13243.6 SQHop_cyclase_C Domain 2 318 319 164.4 3.4e-48 1 CL0059
Cotton_A_35181_CDS 26 256 25 256 PF00182.19 Glyco_hydro_19 Domain 2 232 232 429.9 2.9e-129 1 CL0037
Cotton_A_34031_CDS 222 329 217 331 PF02170.22 PAZ Domain 23 135 137 35.2 9.6e-09 1 CL0638
Cotton_A_34031_CDS 372 490 372 490 PF00636.26 Ribonuclease_3 Family 1 105 105 83.0 2e-23 1 CL0539
Cotton_A_34031_CDS 562 673 562 673 PF00636.26 Ribonuclease_3 Family 1 105 105 74.3 1e-20 1 CL0539
Cotton_A_34031_CDS 700 764 700 764 PF00035.26 dsrm Domain 1 67 67 25.1 2.2e-05 1 CL0196
Cotton_A_10390_CDS 65 108 64 108 PF12023.8 DUF3511 Family 2 45 45 86.7 6.6e-25 1 No_clan
Cotton_A_02160_CDS 104 259 101 260 PF01699.24 Na_Ca_ex Family 4 150 151 82.8 2.4e-23 1 No_clan
Cotton_A_02160_CDS 318 456 316 460 PF01699.24 Na_Ca_ex Family 4 147 151 78.2 6.2e-22 1 No_clan
Cotton_A_15636_CDS 2 50 1 55 PF00656.22 Peptidase_C14 Domain 63 106 248 30.8 2.7e-07 1 CL0093
Cotton_A_25121_CDS 26 287 26 288 PF02265.16 S1-P1_nuclease Domain 1 252 253 270.6 1.5e-80 1 CL0368
Cotton_A_05975_CDS 279 572 279 573 PF01501.20 Glyco_transf_8 Family 1 255 256 236.5 3.4e-70 1 CL0110
Cotton_A_38935_CDS 96 228 94 230 PF00581.20 Rhodanese Domain 3 105 107 44.8 1.4e-11 1 CL0031
Cotton_A_32664_CDS 103 158 103 159 PF03106.15 WRKY Domain 1 58 59 80.4 8.5e-23 1 CL0274
Cotton_A_32664_CDS 278 335 278 335 PF03106.15 WRKY Domain 1 59 59 89.9 8.7e-26 1 CL0274
Cotton_A_17789_CDS 25 165 25 165 PF04043.15 PMEI Domain 1 154 154 72.0 6.9e-20 1 No_clan
Cotton_A_03363_CDS 20 94 20 103 PF13417.6 GST_N_3 Domain 1 72 75 60.0 2.2e-16 1 CL0172
Cotton_A_03363_CDS 230 355 227 356 PF01529.20 DHHC Family 4 133 134 133.1 6.5e-39 1 No_clan
Cotton_A_13238_CDS 70 91 68 95 PF00036.32 EF-hand_1 Domain 3 24 29 27.1 1.8e-06 1 CL0220
Cotton_A_13238_CDS 171 194 169 194 PF13202.6 EF-hand_5 Domain 2 25 25 27.4 1.5e-06 1 CL0220
Cotton_A_25684_CDS 12 109 9 109 PF00044.24 Gp_dh_N Domain 7 101 101 102.6 1.2e-29 1 CL0063
Cotton_A_25684_CDS 117 212 110 213 PF02800.20 Gp_dh_C Domain 16 109 158 98.5 2.8e-28 1 CL0139
Cotton_A_18806_CDS 922 1099 921 1118 PF12717.7 Cnd1 Family 2 154 162 98.9 3e-28 1 CL0020
Cotton_A_22934_CDS 119 176 119 176 PF03106.15 WRKY Domain 1 59 59 90.5 5.9e-26 1 CL0274
Cotton_A_07668_CDS 27 121 23 126 PF13962.6 PGG Domain 6 100 116 73.4 1.2e-20 1 No_clan
Cotton_A_21218_CDS 36 187 36 187 PF04043.15 PMEI Domain 1 154 154 102.3 3.2e-29 1 No_clan
Cotton_A_16749_CDS 35 124 32 125 PF12796.7 Ank_2 Repeat 4 82 83 40.9 2.3e-10 1 CL0465
Cotton_A_16749_CDS 125 184 117 192 PF12796.7 Ank_2 Repeat 24 75 83 32.1 1.3e-07 1 CL0465
Cotton_A_16749_CDS 192 251 184 261 PF12796.7 Ank_2 Repeat 24 74 83 36.2 6.8e-09 1 CL0465
Cotton_A_16749_CDS 370 497 367 500 PF01529.20 DHHC Family 5 131 134 106.0 1.5e-30 1 No_clan
Cotton_A_06829_CDS 152 319 136 329 PF00295.17 Glyco_hydro_28 Domain 93 259 325 215.9 7.3e-64 1 CL0268
Cotton_A_06829_CDS 342 409 333 415 PF06485.11 Tab2_like Family 189 254 268 29.0 7.2e-07 1 No_clan
Cotton_A_37464_CDS 18 429 14 434 PF02458.15 Transferase Family 9 428 434 221.2 2e-65 1 CL0149
Cotton_A_26698_CDS 374 614 362 616 PF07714.17 Pkinase_Tyr Domain 28 257 259 72.6 3.1e-20 1 CL0016
Cotton_A_11803_CDS 45 219 45 219 PF14543.6 TAXi_N Domain 1 178 178 153.5 6.5e-45 1 CL0129
Cotton_A_11803_CDS 258 415 258 416 PF14541.6 TAXi_C Domain 1 160 161 191.8 6.6e-57 1 CL0129
Cotton_A_20943_CDS 490 523 489 523 PF08880.11 QLQ Domain 2 34 35 35.1 8.1e-09 1 No_clan
Cotton_A_33542_CDS 1 47 1 52 PF11779.8 SPT_ssu-like Family 1 47 54 82.2 1.5e-23 1 No_clan
Cotton_A_27733_CDS 289 499 286 502 PF07228.12 SpoIIE Family 5 190 193 36.3 5.3e-09 1 CL0238
Cotton_A_15442_CDS 2 206 1 207 PF00141.23 peroxidase Domain 40 228 229 206.6 4.2e-61 1 CL0617
Cotton_A_03607_CDS 14 124 14 126 PF01277.17 Oleosin Family 1 111 113 153.2 2e-45 1 No_clan
Cotton_A_14083_CDS 38 77 36 77 PF08263.12 LRRNT_2 Family 3 41 41 50.6 1.7e-13 1 No_clan
Cotton_A_14083_CDS 272 328 271 331 PF13855.6 LRR_8 Repeat 2 58 61 31.1 1.4e-07 1 CL0022
Cotton_A_14083_CDS 372 428 369 428 PF13855.6 LRR_8 Repeat 5 61 61 30.2 2.7e-07 1 CL0022
Cotton_A_14083_CDS 587 645 585 645 PF13855.6 LRR_8 Repeat 3 61 61 30.9 1.7e-07 1 CL0022
Cotton_A_14083_CDS 847 1045 845 1112 PF00069.25 Pkinase Domain 3 197 264 143.4 8.4e-42 1 CL0016
Cotton_A_19108_CDS 151 210 151 212 PF00130.22 C1_1 Domain 1 51 53 44.2 1.3e-11 1 CL0006
Cotton_A_19108_CDS 359 459 359 482 PF00781.24 DAGK_cat Family 1 104 126 89.9 9.4e-26 1 CL0240
Cotton_A_19108_CDS 540 690 535 690 PF00609.19 DAGK_acc Family 8 160 160 171.2 2e-50 1 No_clan
Cotton_A_13328_CDS 23 189 22 198 PF00106.25 adh_short Domain 2 140 195 95.8 2.2e-27 1 CL0063
Cotton_A_24784_CDS 123 497 68 514 PF00171.22 Aldedh Family 59 425 462 124.1 5.3e-36 1 CL0099
Cotton_A_35753_CDS 27 92 10 98 PF14368.6 LTP_2 Family 16 76 97 31.6 1.3e-07 1 CL0482
Cotton_A_21957_CDS 46 364 45 365 PF16913.5 PUNUT Family 2 321 322 405.4 1.7e-121 1 CL0184
Cotton_A_38128_CDS 39 117 13 119 PF09696.10 Ctf8 Family 45 140 142 36.9 4.1e-09 1 No_clan
Cotton_A_26645_CDS 11 298 11 298 PF00696.28 AA_kinase Family 2 241 241 220.9 1.8e-65 1 No_clan
Cotton_A_29961_CDS 13 87 12 88 PF06404.12 PSK Family 1 89 90 74.6 9.7e-21 1 No_clan
Cotton_A_19806_CDS 188 343 187 345 PF01764.25 Lipase_3 Family 2 140 142 132.5 9.8e-39 1 CL0028
Cotton_A_28023_CDS 46 282 46 282 PF01177.22 Asp_Glu_race Family 1 224 224 117.8 6.3e-34 1 CL0399
Cotton_A_21364_CDS 2 98 1 111 PF12624.7 Chorein_N Family 2 96 116 38.2 1.3e-09 1 No_clan
Cotton_A_01272_CDS 14 56 9 56 PF08263.12 LRRNT_2 Family 6 41 41 27.4 3e-06 1 No_clan
Cotton_A_01272_CDS 86 144 85 145 PF13855.6 LRR_8 Repeat 2 60 61 27.1 2.5e-06 1 CL0022
Cotton_A_01272_CDS 279 335 277 337 PF13855.6 LRR_8 Repeat 3 59 61 34.2 1.5e-08 1 CL0022
Cotton_A_01272_CDS 694 919 687 921 PF07714.17 Pkinase_Tyr Domain 18 257 259 53.5 2e-14 1 CL0016
Cotton_A_06073_CDS 81 175 81 175 PF02922.18 CBM_48 Domain 1 84 84 61.3 8.6e-17 1 CL0369
Cotton_A_00140_CDS 73 100 73 101 PF08265.11 YL1_C Domain 1 28 29 52.2 3.7e-14 1 No_clan
Cotton_A_02492_CDS 12 103 12 109 PF03226.14 Yippee-Mis18 Domain 1 88 105 65.1 5.4e-18 1 CL0080
Cotton_A_03726_CDS 41 466 41 482 PF00067.22 p450 Domain 1 444 463 206.6 6e-61 1 No_clan
Cotton_A_29056_CDS 31 445 26 447 PF02458.15 Transferase Family 6 431 434 322.1 4.6e-96 1 CL0149
Cotton_A_17613_CDS 78 355 78 355 PF02091.15 tRNA-synt_2e Domain 1 278 278 432.2 7e-130 1 CL0040
Cotton_A_17613_CDS 391 921 391 930 PF02092.17 tRNA_synt_2f Family 1 520 534 574.0 3.8e-172 1 No_clan
Cotton_A_23578_CDS 57 331 33 332 PF00389.30 2-Hacid_dh Domain 33 133 134 58.7 4.5e-16 1 CL0325
Cotton_A_23578_CDS 127 300 127 300 PF02826.19 2-Hacid_dh_C Domain 1 178 178 163.9 2.3e-48 1 CL0063
Cotton_A_00161_CDS 41 144 39 145 PF00168.30 C2 Domain 3 102 103 52.4 5.2e-14 1 CL0154
Cotton_A_00161_CDS 202 294 202 308 PF00168.30 C2 Domain 1 93 103 62.8 3.1e-17 1 CL0154
Cotton_A_00161_CDS 363 476 363 476 PF00168.30 C2 Domain 1 103 103 70.4 1.3e-19 1 CL0154
Cotton_A_00161_CDS 622 778 622 778 PF08372.10 PRT_C Family 1 156 156 185.0 7.4e-55 1 CL0484
Cotton_A_28865_CDS 138 292 72 318 PF00201.18 UDPGT Family 264 397 499 70.8 9.9e-20 1 CL0113
Cotton_A_11868_CDS 83 139 83 139 PF13639.6 zf-RING_2 Domain 1 44 44 40.5 2.5e-10 1 CL0229
Cotton_A_13772_CDS 76 217 76 217 PF02729.21 OTCace_N Domain 1 148 148 162.2 8.2e-48 1 No_clan
Cotton_A_13772_CDS 223 373 223 375 PF00185.24 OTCace Domain 1 155 157 188.6 7e-56 1 CL0399
Cotton_A_02860_CDS 15 96 13 98 PF00722.21 Glyco_hydro_16 Domain 3 82 177 76.3 1.9e-21 1 CL0004
Cotton_A_02860_CDS 97 163 95 164 PF00722.21 Glyco_hydro_16 Domain 110 176 177 79.9 1.5e-22 1 CL0004
Cotton_A_27447_CDS 5 119 5 120 PF15249.6 GLTSCR1 Family 1 101 102 96.8 8.4e-28 1 No_clan
Cotton_A_22792_CDS 105 162 37 162 PF14510.6 ABC_trans_N Domain 30 81 81 41.3 1.8e-10 1 No_clan
Cotton_A_22792_CDS 187 369 187 371 PF00005.27 ABC_tran Domain 1 135 137 48.3 1.4e-12 1 CL0023
Cotton_A_22792_CDS 523 734 522 735 PF01061.24 ABC2_membrane Family 2 209 210 162.4 9.1e-48 1 CL0181
Cotton_A_22792_CDS 740 804 740 804 PF08370.11 PDR_assoc Family 1 65 65 93.2 5.9e-27 1 No_clan
Cotton_A_22792_CDS 919 1070 918 1070 PF00005.27 ABC_tran Domain 2 137 137 67.1 2.2e-18 1 CL0023
Cotton_A_22792_CDS 1216 1429 1215 1429 PF01061.24 ABC2_membrane Family 2 210 210 192.5 5.6e-57 1 CL0181
Cotton_A_31755_CDS 210 575 207 576 PF00152.20 tRNA-synt_2 Domain 5 313 314 201.8 1.4e-59 1 CL0040
Cotton_A_36805_CDS 1 53 1 53 PF00464.19 SHMT Domain 19 71 399 80.4 9.6e-23 1 CL0061
Cotton_A_01784_CDS 21 110 21 110 PF00447.17 HSF_DNA-bind Domain 1 96 96 102.5 1.4e-29 1 CL0123
Cotton_A_02465_CDS 33 174 32 176 PF04043.15 PMEI Domain 2 151 154 29.9 6e-07 1 No_clan
Cotton_A_27822_CDS 32 102 31 102 PF17181.4 EPF Family 2 53 53 55.5 4e-15 1 No_clan
Cotton_A_22944_CDS 1 78 1 78 PF05922.16 Inhibitor_I9 Domain 2 82 82 53.5 2.9e-14 1 CL0570
Cotton_A_22944_CDS 100 550 99 550 PF00082.22 Peptidase_S8 Domain 2 298 298 163.7 5.6e-48 1 No_clan
Cotton_A_22944_CDS 608 707 607 707 PF17766.1 fn3_6 Domain 2 99 99 82.0 2.7e-23 1 CL0159
Cotton_A_38966_CDS 1 151 1 194 PF14009.6 DUF4228 Family 1 157 179 69.6 4.4e-19 1 No_clan
Cotton_A_33634_CDS 211 248 209 249 PF00514.23 Arm Repeat 3 40 41 31.4 1.3e-07 1 CL0020
Cotton_A_33634_CDS 293 331 292 331 PF00514.23 Arm Repeat 3 41 41 25.5 9.4e-06 1 CL0020
Cotton_A_40007_CDS 72 98 69 99 PF01535.20 PPR Family 4 30 31 9.9 0.94 1 CL0020
Cotton_A_40007_CDS 101 125 100 126 PF01535.20 PPR Family 2 26 31 17.5 0.0034 1 CL0020
Cotton_A_40007_CDS 170 197 167 197 PF01535.20 PPR Family 4 31 31 10.3 0.68 1 CL0020
Cotton_A_40007_CDS 198 225 198 227 PF01535.20 PPR Family 1 28 31 15.0 0.021 1 CL0020
Cotton_A_40007_CDS 273 298 273 300 PF01535.20 PPR Family 4 29 31 11.4 0.32 1 CL0020
Cotton_A_40007_CDS 300 347 299 348 PF13041.6 PPR_2 Repeat 2 49 50 44.6 1.2e-11 1 CL0020
Cotton_A_40007_CDS 441 484 437 486 PF13041.6 PPR_2 Repeat 5 48 50 39.1 6.4e-10 1 CL0020
Cotton_A_40007_CDS 513 536 511 538 PF01535.20 PPR Family 3 26 31 12.0 0.2 1 CL0020
Cotton_A_10045_CDS 3 272 3 272 PF00346.19 Complex1_49kDa Family 1 271 271 339.5 1.1e-101 1 No_clan
Cotton_A_16354_CDS 157 398 155 402 PF00566.18 RabGAP-TBC Family 3 211 215 181.4 1.7e-53 1 No_clan
Cotton_A_36248_CDS 2 151 1 152 PF00078.27 RVT_1 Family 16 221 222 93.0 1.9e-26 1 CL0027
Cotton_A_36248_CDS 215 281 215 284 PF17919.1 RT_RNaseH_2 Domain 1 72 100 61.7 5.2e-17 1 CL0219
Cotton_A_36248_CDS 381 432 379 432 PF17921.1 Integrase_H2C2 Domain 3 52 58 57.8 8.8e-16 1 CL0361
Cotton_A_30616_CDS 44 427 43 428 PF01490.18 Aa_trans Family 2 408 409 217.1 3.4e-64 1 CL0062
Cotton_A_31428_CDS 34 83 34 84 PF01799.20 Fer2_2 Domain 1 50 76 61.9 4.2e-17 1 CL0486
Cotton_A_31115_CDS 1 42 1 43 PF00403.26 HMA Domain 17 61 62 27.0 4.6e-06 1 No_clan
Cotton_A_06184_CDS 95 613 95 613 PF03141.16 Methyltransf_29 Family 1 506 506 440.9 5.4e-132 1 CL0063
Cotton_A_15160_CDS 25 306 22 312 PF08392.12 FAE1_CUT1_RppA Family 4 284 290 353.0 1.2e-105 1 CL0046
Cotton_A_15160_CDS 326 409 319 410 PF08541.10 ACP_syn_III_C Domain 9 89 90 51.0 1.2e-13 1 CL0046
Cotton_A_16694_CDS 11 84 11 84 PF07765.12 KIP1 Family 1 74 74 117.4 2.2e-34 1 No_clan
Cotton_A_15483_CDS 39 121 39 121 PF02298.17 Cu_bind_like Domain 1 84 84 81.1 4.4e-23 1 CL0026
Cotton_A_14222_CDS 6 91 5 109 PF18052.1 Rx_N Domain 2 83 93 59.8 2.3e-16 1 No_clan
Cotton_A_14771_CDS 236 603 235 603 PF03514.14 GRAS Family 2 374 374 371.5 4.3e-111 1 CL0063
Cotton_A_00295_CDS 67 120 66 120 PF14416.6 PMR5N Domain 2 53 53 72.6 2.3e-20 1 No_clan
Cotton_A_00295_CDS 121 410 121 411 PF13839.6 PC-Esterase Family 1 282 283 318.1 6.7e-95 1 CL0264
Cotton_A_35990_CDS 90 215 86 242 PF07714.17 Pkinase_Tyr Domain 5 132 259 84.9 5.4e-24 1 CL0016
Cotton_A_19606_CDS 41 144 38 168 PF02181.23 FH2 Family 176 278 372 108.2 4.8e-31 1 No_clan
Cotton_A_24984_CDS 85 137 85 153 PF00005.27 ABC_tran Domain 1 51 137 33.1 6.9e-08 1 CL0023
Cotton_A_27212_CDS 211 349 210 350 PF07526.11 POX Domain 2 135 136 176.1 5e-52 1 No_clan
Cotton_A_27212_CDS 418 457 418 457 PF05920.11 Homeobox_KN Family 1 40 40 62.3 2.9e-17 1 CL0123
Cotton_A_35722_CDS 58 106 55 107 PF01344.25 Kelch_1 Repeat 6 45 46 26.6 3.3e-06 1 CL0186
Cotton_A_08849_CDS 13 201 13 201 PF00316.20 FBPase Domain 1 189 189 270.9 4.3e-81 1 CL0171
Cotton_A_03753_CDS 16 234 13 288 PF07714.17 Pkinase_Tyr Domain 4 206 259 128.0 3.8e-37 1 CL0016
Cotton_A_36909_CDS 56 107 51 111 PF01566.18 Nramp Family 97 148 358 34.9 8.3e-09 1 CL0062
Cotton_A_36909_CDS 108 225 106 226 PF01566.18 Nramp Family 243 357 358 120.3 8.7e-35 1 CL0062
Cotton_A_37656_CDS 241 285 239 288 PF13041.6 PPR_2 Repeat 3 47 50 43.4 2.9e-11 1 CL0020
Cotton_A_37656_CDS 299 359 299 361 PF13812.6 PPR_3 Repeat 1 61 63 56.6 2e-15 1 CL0020
Cotton_A_37656_CDS 377 409 377 410 PF12854.7 PPR_1 Repeat 1 33 34 29.2 5.3e-07 1 CL0020
Cotton_A_37656_CDS 417 464 416 465 PF13041.6 PPR_2 Repeat 2 49 50 51.3 9.8e-14 1 CL0020
Cotton_A_37656_CDS 486 533 486 535 PF13041.6 PPR_2 Repeat 1 48 50 34.6 1.6e-08 1 CL0020
Cotton_A_37656_CDS 629 652 628 653 PF01535.20 PPR Family 5 28 31 9.4 1.3 1 CL0020
Cotton_A_37656_CDS 697 726 696 726 PF01535.20 PPR Family 2 31 31 13.2 0.079 1 CL0020
Cotton_A_37656_CDS 735 755 732 761 PF01535.20 PPR Family 5 25 31 10.7 0.53 1 CL0020
Cotton_A_37656_CDS 803 831 802 832 PF01535.20 PPR Family 2 30 31 23.3 4.7e-05 1 CL0020
Cotton_A_37656_CDS 877 901 875 902 PF01535.20 PPR Family 6 30 31 9.3 1.4 1 CL0020
Cotton_A_37656_CDS 909 937 907 937 PF01535.20 PPR Family 3 31 31 16.0 0.01 1 CL0020
Cotton_A_37656_CDS 974 1021 974 1021 PF13041.6 PPR_2 Repeat 1 48 50 37.7 1.8e-09 1 CL0020
Cotton_A_37656_CDS 1033 1092 1032 1094 PF13812.6 PPR_3 Repeat 2 61 63 25.3 1.1e-05 1 CL0020
Cotton_A_37656_CDS 1119 1147 1118 1147 PF01535.20 PPR Family 3 31 31 15.0 0.022 1 CL0020
Cotton_A_26591_CDS 40 125 40 125 PF06984.13 MRP-L47 Family 1 87 87 120.6 2.3e-35 1 CL0346
Cotton_A_07437_CDS 14 61 14 61 PF00249.31 Myb_DNA-binding Domain 1 46 46 57.4 1.2e-15 1 CL0123
Cotton_A_07437_CDS 68 110 67 112 PF00249.31 Myb_DNA-binding Domain 2 44 46 45.1 8.5e-12 1 CL0123
Cotton_A_08414_CDS 3 411 1 433 PF00067.22 p450 Domain 7 445 463 219.6 6.8e-65 1 No_clan
Cotton_A_10038_CDS 26 72 24 73 PF01084.20 Ribosomal_S18 Family 3 49 52 64.7 6.7e-18 1 CL0123
Cotton_A_38511_CDS 13 75 9 75 PF03946.14 Ribosomal_L11_N Domain 4 65 65 83.2 8.1e-24 1 No_clan
Cotton_A_38511_CDS 80 150 80 150 PF00298.19 Ribosomal_L11 Domain 1 70 70 94.6 3.8e-27 1 No_clan
Cotton_A_22516_CDS 75 123 73 124 PF00847.20 AP2 Domain 3 53 54 45.0 9e-12 1 CL0081
Cotton_A_26887_CDS 232 532 218 534 PF10250.9 O-FucT Family 22 333 336 42.9 4.8e-11 1 CL0113
Cotton_A_02066_CDS 5 50 3 50 PF00319.18 SRF-TF Domain 3 48 48 74.4 3.4e-21 1 No_clan
Cotton_A_16188_CDS 39 82 32 87 PF13812.6 PPR_3 Repeat 14 57 63 20.9 0.00029 1 CL0020
Cotton_A_16188_CDS 108 156 108 157 PF13041.6 PPR_2 Repeat 1 49 50 41.0 1.6e-10 1 CL0020
Cotton_A_01541_CDS 297 390 297 390 PF04749.17 PLAC8 Family 1 99 99 59.8 4.1e-16 1 No_clan
Cotton_A_02176_CDS 218 541 193 543 PF00654.20 Voltage_CLC Family 38 351 354 235.2 1.2e-69 1 No_clan
Cotton_A_02176_CDS 594 649 590 650 PF00571.28 CBS Domain 1 56 57 34.0 3e-08 1 No_clan
Cotton_A_19317_CDS 290 698 286 699 PF02181.23 FH2 Family 5 371 372 352.3 3.3e-105 1 No_clan
Cotton_A_17392_CDS 172 220 171 220 PF13041.6 PPR_2 Repeat 2 50 50 43.2 3.4e-11 1 CL0020
Cotton_A_17392_CDS 248 270 247 272 PF01535.20 PPR Family 5 27 31 12.9 0.1 1 CL0020
Cotton_A_17392_CDS 303 351 303 352 PF13041.6 PPR_2 Repeat 1 49 50 38.4 1.1e-09 1 CL0020
Cotton_A_17392_CDS 405 451 404 453 PF13041.6 PPR_2 Repeat 2 48 50 33.4 3.8e-08 1 CL0020
Cotton_A_17392_CDS 479 503 478 505 PF01535.20 PPR Family 2 26 31 10.8 0.46 1 CL0020
Cotton_A_17392_CDS 579 701 578 702 PF14432.6 DYW_deaminase Family 2 126 127 122.6 8.9e-36 1 CL0109
Cotton_A_01258_CDS 12 159 12 159 PF08212.12 Lipocalin_2 Domain 1 146 146 184.1 1.3e-54 1 CL0116
Cotton_A_39627_CDS 4 48 1 49 PF00071.22 Ras Domain 118 161 162 30.1 3.2e-07 1 CL0023
Cotton_A_33371_CDS 54 598 53 599 PF01602.20 Adaptin_N Family 2 523 524 438.1 4e-131 1 CL0020
Cotton_A_29775_CDS 27 99 5 103 PF02519.14 Auxin_inducible Family 17 85 90 32.4 7.9e-08 1 No_clan
Cotton_A_33666_CDS 110 424 106 438 PF00295.17 Glyco_hydro_28 Domain 6 309 325 272.0 6.2e-81 1 CL0268
Cotton_A_30078_CDS 40 243 39 243 PF01027.20 Bax1-I Family 2 207 207 158.9 1.5e-46 1 CL0453
Cotton_A_34720_CDS 32 96 32 107 PF13774.6 Longin Domain 1 67 84 69.7 1.6e-19 1 No_clan
Cotton_A_34720_CDS 148 234 146 234 PF00957.21 Synaptobrevin Family 3 89 89 110.0 3.7e-32 1 CL0445
Cotton_A_32850_CDS 60 112 59 113 PF14416.6 PMR5N Domain 2 52 53 77.5 7e-22 1 No_clan
Cotton_A_32850_CDS 114 219 114 220 PF13839.6 PC-Esterase Family 1 108 283 106.9 1.5e-30 1 CL0264
Cotton_A_32850_CDS 222 375 218 376 PF13839.6 PC-Esterase Family 139 282 283 148.0 4.7e-43 1 CL0264
Cotton_A_02226_CDS 27 91 16 99 PF12796.7 Ank_2 Repeat 25 78 83 34.8 1.8e-08 1 CL0465
Cotton_A_02226_CDS 96 159 90 166 PF12796.7 Ank_2 Repeat 23 76 83 42.2 8.8e-11 1 CL0465
Cotton_A_02226_CDS 168 225 158 236 PF12796.7 Ank_2 Repeat 24 74 83 47.2 2.6e-12 1 CL0465
Cotton_A_02226_CDS 233 280 227 280 PF13857.6 Ank_5 Repeat 10 56 56 32.2 9.5e-08 1 CL0465
Cotton_A_02226_CDS 352 467 351 468 PF13962.6 PGG Domain 2 115 116 91.0 4.5e-26 1 No_clan
Cotton_A_27819_CDS 11 150 11 154 PF02018.17 CBM_4_9 Domain 1 133 138 73.9 1.5e-20 1 CL0202
Cotton_A_27819_CDS 185 321 184 325 PF02018.17 CBM_4_9 Domain 2 133 138 65.5 6e-18 1 CL0202
Cotton_A_27819_CDS 356 498 355 500 PF02018.17 CBM_4_9 Domain 2 136 138 66.6 2.7e-18 1 CL0202
Cotton_A_27819_CDS 556 813 552 822 PF00331.20 Glyco_hydro_10 Family 6 280 316 152.3 1.7e-44 1 CL0058
Cotton_A_30844_CDS 1 35 1 36 PF00329.19 Complex1_30kDa Family 87 121 122 40.3 4.1e-10 1 No_clan
Cotton_A_30844_CDS 70 277 69 280 PF00902.18 TatC Family 4 203 207 86.4 2.2e-24 1 No_clan
Cotton_A_35272_CDS 315 569 313 574 PF07714.17 Pkinase_Tyr Domain 3 253 259 136.5 9.7e-40 1 CL0016
Cotton_A_35272_CDS 596 662 596 665 PF04564.15 U-box Domain 1 68 73 56.7 2e-15 1 CL0229
Cotton_A_20003_CDS 62 247 62 248 PF14543.6 TAXi_N Domain 1 177 178 142.2 2e-41 1 CL0129
Cotton_A_20003_CDS 265 416 265 418 PF14541.6 TAXi_C Domain 1 159 161 85.6 3.1e-24 1 CL0129
Cotton_A_40091_CDS 7 162 7 170 PF15011.6 CK2S Family 1 153 161 152.6 8.1e-45 1 No_clan
Cotton_A_12993_CDS 1 33 1 34 PF17781.1 RPN1_RPN2_N Domain 34 66 309 43.2 3.2e-11 1 No_clan
Cotton_A_12993_CDS 24 54 24 58 PF17781.1 RPN1_RPN2_N Domain 77 107 309 25.9 6e-06 1 No_clan
Cotton_A_28663_CDS 90 341 88 342 PF00481.21 PP2C Family 3 257 258 236.6 3.4e-70 1 CL0238
Cotton_A_00231_CDS 158 269 157 270 PF04059.12 RRM_2 Family 2 96 97 79.6 1.5e-22 1 CL0221
Cotton_A_18592_CDS 127 214 127 215 PF03088.16 Str_synth Family 1 88 89 70.4 1e-19 1 CL0186
Cotton_A_08321_CDS 27 113 27 115 PF02727.16 Cu_amine_oxidN2 Domain 1 85 87 71.0 7.4e-20 1 CL0047
Cotton_A_08321_CDS 121 219 121 219 PF02728.16 Cu_amine_oxidN3 Domain 1 101 101 80.8 7.6e-23 1 CL0047
Cotton_A_08321_CDS 243 659 242 660 PF01179.20 Cu_amine_oxid Domain 2 409 410 458.7 1.7e-137 1 CL0103
Cotton_A_25365_CDS 129 774 128 776 PF00133.22 tRNA-synt_1 Family 2 600 602 618.2 1.3e-185 1 CL0039
Cotton_A_25365_CDS 826 990 826 990 PF08264.13 Anticodon_1 Domain 1 152 152 98.4 3.7e-28 1 CL0258
Cotton_A_25365_CDS 1059 1087 1059 1088 PF06827.14 zf-FPG_IleRS Domain 1 29 30 25.0 1.3e-05 1 CL0167
Cotton_A_31666_CDS 1 171 1 171 PF00421.19 PSII Family 337 507 507 273.2 4e-81 1 No_clan
Cotton_A_31069_CDS 208 263 206 265 PF00462.24 Glutaredoxin Domain 3 58 60 49.5 3.5e-13 1 CL0172
Cotton_A_31069_CDS 325 392 324 392 PF00610.21 DEP Domain 2 72 72 49.1 4.5e-13 1 CL0123
Cotton_A_31069_CDS 472 596 469 597 PF04784.14 DUF547 Family 4 122 123 101.0 4.3e-29 1 No_clan
Cotton_A_07340_CDS 351 537 349 537 PF05024.15 Gpi1 Family 3 187 187 177.8 2.4e-52 1 No_clan
Cotton_A_05471_CDS 3 74 3 74 PF00240.23 ubiquitin Domain 1 72 72 117.4 1.7e-34 1 CL0072
Cotton_A_05471_CDS 78 123 78 124 PF01020.17 Ribosomal_L40e Family 1 46 50 93.7 4.6e-27 1 CL0167
Cotton_A_02871_CDS 23 227 9 227 PF00141.23 peroxidase Domain 11 229 229 144.4 4.3e-42 1 CL0617
Cotton_A_31687_CDS 22 84 20 85 PF00690.26 Cation_ATPase_N Domain 4 68 69 50.7 1.1e-13 1 No_clan
Cotton_A_31687_CDS 133 311 131 312 PF00122.20 E1-E2_ATPase Family 3 180 181 163.3 4.2e-48 1 No_clan
Cotton_A_31687_CDS 328 605 328 605 PF00702.26 Hydrolase Domain 1 210 210 66.8 3.1e-18 1 CL0137
Cotton_A_23895_CDS 13 159 12 160 PF04043.15 PMEI Domain 2 153 154 85.6 4.3e-24 1 No_clan
Cotton_A_23895_CDS 193 491 193 492 PF01095.19 Pectinesterase Family 1 297 298 437.2 1.9e-131 1 CL0268
Cotton_A_13064_CDS 9 58 7 59 PF04770.12 ZF-HD_dimer Family 3 54 55 83.7 8.2e-24 1 No_clan
Cotton_A_35422_CDS 110 127 108 128 PF00612.27 IQ Motif 3 20 21 23.9 2.1e-05 1 CL0220
Cotton_A_35422_CDS 134 148 131 150 PF00612.27 IQ Motif 5 19 21 13.8 0.037 1 CL0220
Cotton_A_06755_CDS 2 556 1 556 PF03321.13 GH3 Family 2 527 527 601.2 2e-180 1 CL0378
Cotton_A_30876_CDS 1 88 1 88 PF02536.14 mTERF Family 226 314 314 67.1 1.2e-18 1 No_clan
Cotton_A_38654_CDS 110 130 110 131 PF18044.1 zf-CCCH_4 Domain 1 21 22 33.1 3.5e-08 1 CL0537
Cotton_A_38654_CDS 140 176 138 176 PF00400.32 WD40 Repeat 3 38 38 16.7 0.0098 1 CL0186
Cotton_A_38654_CDS 302 336 301 337 PF00400.32 WD40 Repeat 2 37 38 17.2 0.0068 1 CL0186
Cotton_A_10867_CDS 110 492 71 501 PF00201.18 UDPGT Family 45 418 499 93.1 1.7e-26 1 CL0113
Cotton_A_24404_CDS 37 196 36 196 PF04043.15 PMEI Domain 2 154 154 111.8 3.8e-32 1 No_clan
Cotton_A_07498_CDS 65 218 65 219 PF00005.27 ABC_tran Domain 1 136 137 83.7 1.6e-23 1 CL0023
Cotton_A_30357_CDS 1 94 1 106 PF04825.13 Rad21_Rec8_N Family 1 93 110 93.7 7.6e-27 1 No_clan
Cotton_A_30357_CDS 889 941 888 942 PF04824.16 Rad21_Rec8 Family 2 54 55 56.6 1.1e-15 1 CL0157
Cotton_A_30357_CDS 960 1082 960 1086 PF00572.18 Ribosomal_L13 Family 1 119 125 145.0 1.3e-42 1 No_clan
Cotton_A_15886_CDS 8 144 8 144 PF03870.15 RNA_pol_Rpb8 Family 1 139 139 174.5 1.3e-51 1 CL0021
Cotton_A_07214_CDS 1 112 1 112 PF05670.13 NFACT-R_1 Domain 1 109 109 144.8 1.4e-42 1 CL0684
Cotton_A_36278_CDS 3 71 3 74 PF04564.15 U-box Domain 1 69 73 61.6 6e-17 1 CL0229
Cotton_A_30564_CDS 89 181 89 192 PF00011.21 HSP20 Family 1 89 102 46.2 3.9e-12 1 CL0190
Cotton_A_22714_CDS 79 175 77 181 PF03879.14 Cgr1 Family 4 100 108 25.1 1.8e-05 1 No_clan
Cotton_A_21080_CDS 62 118 61 118 PF00831.23 Ribosomal_L29 Family 2 57 57 63.5 1.3e-17 1 CL0346
Cotton_A_28343_CDS 15 93 12 99 PF00153.27 Mito_carr Family 5 91 97 56.3 2.2e-15 1 No_clan
Cotton_A_28343_CDS 103 196 102 200 PF00153.27 Mito_carr Family 2 93 97 66.5 1.4e-18 1 No_clan
Cotton_A_28343_CDS 209 293 204 297 PF00153.27 Mito_carr Family 9 92 97 49.0 4.3e-13 1 No_clan
Cotton_A_06496_CDS 1 77 1 84 PF04889.12 Cwf_Cwc_15 Family 1 79 247 48.9 6.8e-13 1 No_clan
Cotton_A_12368_CDS 202 255 201 256 PF17820.1 PDZ_6 Domain 2 55 56 45.4 5.3e-12 1 CL0466
Cotton_A_12368_CDS 291 438 290 439 PF03572.18 Peptidase_S41 Family 2 164 166 102.7 1.5e-29 1 CL0127
Cotton_A_18657_CDS 82 120 82 120 PF00885.19 DMRL_synthase Domain 1 39 141 28.9 8.2e-07 1 No_clan
Cotton_A_18657_CDS 120 187 119 189 PF00885.19 DMRL_synthase Domain 72 139 141 81.1 6.6e-23 1 No_clan
Cotton_A_13369_CDS 144 183 137 183 PF13855.6 LRR_8 Repeat 21 61 61 28.4 1e-06 1 CL0022
Cotton_A_13369_CDS 196 208 196 221 PF00560.33 LRR_1 Repeat 1 13 23 10.7 0.67 1 CL0022
Cotton_A_13369_CDS 223 282 222 282 PF13855.6 LRR_8 Repeat 2 61 61 52.2 3.9e-14 1 CL0022
Cotton_A_33642_CDS 26 175 25 175 PF04535.12 DUF588 Domain 2 150 150 142.6 7.9e-42 1 CL0396
Cotton_A_23222_CDS 173 218 168 222 PF13812.6 PPR_3 Repeat 12 58 63 19.6 0.00072 1 CL0020
Cotton_A_23222_CDS 220 238 211 238 PF01535.20 PPR Family 13 31 31 11.3 0.34 1 CL0020
Cotton_A_23222_CDS 240 287 240 289 PF13041.6 PPR_2 Repeat 1 48 50 49.3 4.1e-13 1 CL0020
Cotton_A_23222_CDS 310 356 310 358 PF13041.6 PPR_2 Repeat 1 47 50 40.3 2.6e-10 1 CL0020
Cotton_A_23222_CDS 388 413 384 413 PF01535.20 PPR Family 6 31 31 17.7 0.0029 1 CL0020
Cotton_A_23222_CDS 423 447 421 448 PF01535.20 PPR Family 6 30 31 17.7 0.003 1 CL0020
Cotton_A_32481_CDS 18 226 17 227 PF07795.11 DUF1635 Family 2 223 224 195.8 8.8e-58 1 No_clan
Cotton_A_25871_CDS 123 223 123 225 PF02362.21 B3 Family 1 99 101 77.0 8e-22 1 CL0405
Cotton_A_25871_CDS 249 328 249 328 PF06507.13 Auxin_resp Family 1 83 83 109.4 7.8e-32 1 No_clan
Cotton_A_25871_CDS 526 582 513 585 PF02309.16 AUX_IAA Family 109 162 237 30.6 2.9e-07 1 CL0072
Cotton_A_25871_CDS 590 626 583 636 PF02309.16 AUX_IAA Family 191 227 237 22.8 7.2e-05 1 CL0072
Cotton_A_30548_CDS 19 74 17 77 PF05030.12 SSXT Family 3 58 62 75.8 1.5e-21 1 No_clan
Cotton_A_00309_CDS 248 361 224 379 PF03031.18 NIF Family 26 130 156 32.3 7.7e-08 1 CL0137
Cotton_A_00309_CDS 691 752 689 752 PF00035.26 dsrm Domain 3 67 67 31.5 2.1e-07 1 CL0196
Cotton_A_14009_CDS 133 238 133 238 PF03168.13 LEA_2 Domain 1 101 101 33.4 5e-08 1 CL0159
Cotton_A_04924_CDS 28 205 28 205 PF00265.18 TK Family 1 177 177 181.5 1.3e-53 1 CL0023
Cotton_A_35032_CDS 4 57 2 61 PF03004.14 Transposase_24 Family 3 57 142 25.0 1.6e-05 1 No_clan
Cotton_A_25466_CDS 61 209 61 209 PF00005.27 ABC_tran Domain 1 137 137 106.2 1.8e-30 1 CL0023
Cotton_A_25466_CDS 366 574 364 574 PF01061.24 ABC2_membrane Family 3 210 210 153.4 5.2e-45 1 CL0181
Cotton_A_05868_CDS 188 277 186 277 PF04576.15 Zein-binding Family 3 92 92 107.9 2.3e-31 1 No_clan
Cotton_A_28883_CDS 55 174 54 174 PF09296.11 NUDIX-like Domain 4 102 102 38.4 1.5e-09 1 CL0261
Cotton_A_28883_CDS 178 209 176 209 PF09297.11 zf-NADH-PPase Domain 3 32 32 35.5 5.5e-09 1 CL0167
Cotton_A_28883_CDS 214 330 211 338 PF00293.28 NUDIX Domain 4 121 131 68.8 4.4e-19 1 CL0261
Cotton_A_28511_CDS 1 69 1 69 PF00189.20 Ribosomal_S3_C Domain 15 83 83 74.9 5.4e-21 1 No_clan
Cotton_A_24930_CDS 48 128 45 130 PF13520.6 AA_permease_2 Family 4 84 425 44.4 9.8e-12 1 CL0062
Cotton_A_24528_CDS 7 54 6 54 PF03107.16 C1_2 Domain 2 47 47 28.1 1.9e-06 1 CL0006
Cotton_A_24528_CDS 63 111 63 111 PF03107.16 C1_2 Domain 1 47 47 44.2 1.7e-11 1 CL0006
Cotton_A_24528_CDS 125 174 124 174 PF03107.16 C1_2 Domain 2 47 47 40.1 3.3e-10 1 CL0006
Cotton_A_28867_CDS 240 412 96 441 PF00201.18 UDPGT Family 245 393 499 69.1 3.2e-19 1 CL0113
Cotton_A_17047_CDS 77 104 26 104 PF03765.15 CRAL_TRIO_N Domain 28 54 54 28.0 1.8e-06 1 CL0214
Cotton_A_17047_CDS 128 294 127 294 PF00650.20 CRAL_TRIO Domain 2 159 159 113.8 6.1e-33 1 CL0512
Cotton_A_22258_CDS 59 145 59 145 PF07911.13 DUF1677 Family 1 89 89 115.5 1.1e-33 1 No_clan
Cotton_A_28329_CDS 16 185 16 186 PF03357.21 Snf7 Family 1 172 173 131.4 2.5e-38 1 CL0235
Cotton_A_26534_CDS 65 171 64 171 PF13947.6 GUB_WAK_bind Domain 2 106 106 96.8 1.1e-27 1 No_clan
Cotton_A_26534_CDS 336 374 336 378 PF07645.15 EGF_CA Domain 1 38 42 36.4 4.3e-09 1 CL0001
Cotton_A_26534_CDS 469 667 469 671 PF00069.25 Pkinase Domain 1 194 264 150.7 4.8e-44 1 CL0016
Cotton_A_32515_CDS 1 18 1 25 PF02533.15 PsbK Family 20 37 41 37.4 2.1e-09 1 No_clan
Cotton_A_26073_CDS 667 734 666 735 PF00076.22 RRM_1 Domain 2 69 70 54.0 1.1e-14 1 CL0221
Cotton_A_26073_CDS 819 834 818 834 PF05391.11 Lsm_interact Motif 4 19 19 29.1 4.6e-07 1 No_clan
Cotton_A_05659_CDS 131 265 101 266 PF16213.5 DCB Family 57 177 178 95.4 3e-27 1 No_clan
Cotton_A_05659_CDS 364 514 362 515 PF12783.7 Sec7_N Domain 3 157 158 129.3 1.1e-37 1 No_clan
Cotton_A_05659_CDS 609 790 608 790 PF01369.20 Sec7 Domain 2 183 183 230.3 1.3e-68 1 No_clan
Cotton_A_05659_CDS 1102 1184 1102 1185 PF09324.10 DUF1981 Family 1 83 84 90.8 3.6e-26 1 No_clan
Cotton_A_05659_CDS 1257 1330 1194 1341 PF16206.5 Mon2_C Family 76 153 785 30.3 1.2e-07 1 No_clan
Cotton_A_25438_CDS 3 74 3 74 PF00240.23 ubiquitin Domain 1 72 72 116.6 3e-34 1 CL0072
Cotton_A_25438_CDS 79 150 79 150 PF00240.23 ubiquitin Domain 1 72 72 97.0 3.9e-28 1 CL0072
Cotton_A_08025_CDS 445 497 445 498 PF08766.11 DEK_C Domain 1 53 54 42.1 6.1e-11 1 No_clan
Cotton_A_25975_CDS 29 62 29 62 PF02375.17 JmjN Family 1 34 34 57.2 1.2e-15 1 CL0029
Cotton_A_11830_CDS 361 403 360 403 PF13639.6 zf-RING_2 Domain 2 44 44 50.9 1.5e-13 1 CL0229
Cotton_A_26285_CDS 307 359 306 375 PF00170.21 bZIP_1 Family 5 61 64 39.7 3.8e-10 1 CL0018
Cotton_A_22559_CDS 21 445 20 446 PF00501.28 AMP-binding Family 2 422 423 296.4 2.7e-88 1 CL0378
Cotton_A_22559_CDS 454 531 454 531 PF13193.6 AMP-binding_C Domain 1 76 76 84.7 6.8e-24 1 CL0531
Cotton_A_40165_CDS 493 526 493 527 PF01851.22 PC_rep Repeat 1 34 35 28.3 1.6e-06 1 CL0020
Cotton_A_40165_CDS 616 708 615 708 PF13646.6 HEAT_2 Family 2 88 88 49.2 5.4e-13 1 CL0020
Cotton_A_40165_CDS 802 962 802 962 PF18004.1 RPN2_C Domain 1 159 160 154.9 1.6e-45 1 No_clan
Cotton_A_29222_CDS 1 85 1 91 PF12796.7 Ank_2 Repeat 1 73 83 31.6 1.9e-07 1 CL0465
Cotton_A_29222_CDS 106 152 100 152 PF13857.6 Ank_5 Repeat 11 55 56 33.2 4.7e-08 1 CL0465
Cotton_A_05845_CDS 11 139 11 139 PF02365.15 NAM Family 1 126 126 129.9 9.8e-38 1 No_clan
Cotton_A_32707_CDS 104 378 75 378 PF16021.5 PDCD7 Family 59 308 308 58.3 6.6e-16 1 No_clan
Cotton_A_05273_CDS 14 107 13 107 PF01922.17 SRP19 Family 2 94 94 111.6 2.6e-32 1 CL0123
Cotton_A_28081_CDS 96 139 90 140 PF13456.6 RVT_3 Domain 80 123 124 23.7 3.2e-05 1 CL0219
Cotton_A_10121_CDS 9 35 6 35 PF14416.6 PMR5N Domain 27 53 53 38.2 1.4e-09 1 No_clan
Cotton_A_10121_CDS 36 302 36 303 PF13839.6 PC-Esterase Family 1 282 283 297.6 1.1e-88 1 CL0264
Cotton_A_16642_CDS 350 498 288 507 PF00067.22 p450 Domain 296 434 463 58.8 4.2e-16 1 No_clan
Cotton_A_19516_CDS 70 358 69 358 PF02309.16 AUX_IAA Family 2 237 237 307.4 7.8e-92 1 CL0072
Cotton_A_11642_CDS 3 211 3 212 PF00091.25 Tubulin Domain 1 196 197 228.4 8.8e-68 1 CL0566
Cotton_A_11642_CDS 261 382 261 383 PF03953.17 Tubulin_C Domain 1 125 126 138.3 1.5e-40 1 CL0442
Cotton_A_00367_CDS 414 446 409 447 PF00400.32 WD40 Repeat 6 37 38 23.7 6.3e-05 1 CL0186
Cotton_A_00367_CDS 498 534 497 534 PF00400.32 WD40 Repeat 2 38 38 32.1 1.3e-07 1 CL0186
Cotton_A_00367_CDS 540 576 538 576 PF00400.32 WD40 Repeat 3 38 38 19.4 0.0014 1 CL0186
Cotton_A_04945_CDS 5 319 5 319 PF14476.6 Chloroplast_duf Family 1 320 320 516.8 1.7e-155 1 No_clan
Cotton_A_21471_CDS 1 154 1 154 PF05686.12 Glyco_transf_90 Family 240 396 396 203.0 7e-60 1 CL0113
Cotton_A_34369_CDS 38 200 38 201 PF04833.15 COBRA Family 1 164 165 231.9 3.6e-69 1 No_clan
Cotton_A_00432_CDS 227 277 227 278 PF00847.20 AP2 Domain 1 53 54 35.6 8.2e-09 1 CL0081
Cotton_A_32318_CDS 115 405 115 405 PF03151.16 TPT Family 1 290 290 373.1 9.1e-112 1 CL0184
Cotton_A_27251_CDS 9 80 9 80 PF00076.22 RRM_1 Domain 1 70 70 58.9 3.2e-16 1 CL0221
Cotton_A_03587_CDS 38 310 6 324 PF04484.12 QWRF Family 10 282 300 233.1 6e-69 1 No_clan
Cotton_A_12855_CDS 25 91 25 92 PF00538.19 Linker_histone Domain 1 73 74 62.3 4e-17 1 CL0123
Cotton_A_40717_CDS 30 105 29 106 PF14569.6 zf-UDP Domain 2 77 78 136.6 2.3e-40 1 CL0229
Cotton_A_40717_CDS 364 1079 364 1084 PF03552.14 Cellulose_synt Family 1 715 722 1346.0 0 1 CL0110
Cotton_A_17804_CDS 47 108 47 108 PF00226.31 DnaJ Domain 1 63 63 74.9 4e-21 1 CL0392
Cotton_A_01634_CDS 263 399 250 424 PF00201.18 UDPGT Family 274 384 499 77.6 8.2e-22 1 CL0113
Cotton_A_28756_CDS 41 420 40 420 PF00155.21 Aminotran_1_2 Domain 2 363 363 343.2 1.9e-102 1 CL0061
Cotton_A_24225_CDS 9 142 9 142 PF02365.15 NAM Family 1 126 126 131.3 3.7e-38 1 No_clan
Cotton_A_30597_CDS 7 111 6 113 PF00635.26 Motile_Sperm Domain 2 107 109 103.3 5.9e-30 1 CL0556
Cotton_A_34553_CDS 13 56 11 57 PF03107.16 C1_2 Domain 3 46 47 36.7 3.9e-09 1 CL0006
Cotton_A_27048_CDS 146 463 146 463 PF07946.14 DUF1682 Family 1 323 323 291.3 9e-87 1 No_clan
Cotton_A_38499_CDS 83 141 82 150 PF05142.12 DUF702 Family 2 60 150 102.5 2.8e-29 1 No_clan
Cotton_A_38499_CDS 151 202 142 203 PF05142.12 DUF702 Family 99 149 150 80.8 1.4e-22 1 No_clan
Cotton_A_08929_CDS 80 186 79 187 PF01491.16 Frataxin_Cyay Domain 2 107 108 122.8 6.2e-36 1 No_clan
Cotton_A_29238_CDS 42 310 41 311 PF00069.25 Pkinase Domain 2 260 264 152.2 1.7e-44 1 CL0016
Cotton_A_05642_CDS 39 88 39 89 PF00249.31 Myb_DNA-binding Domain 1 45 46 26.5 5.4e-06 1 CL0123
Cotton_A_05642_CDS 95 140 95 140 PF00249.31 Myb_DNA-binding Domain 1 46 46 50.3 2e-13 1 CL0123
Cotton_A_35180_CDS 26 111 25 112 PF03171.20 2OG-FeII_Oxy Domain 2 100 101 25.4 1.5e-05 1 CL0029
Cotton_A_14126_CDS 11 114 8 114 PF14368.6 LTP_2 Family 4 97 97 44.2 1.5e-11 1 CL0482
Cotton_A_14126_CDS 205 227 205 235 PF00641.18 zf-RanBP Domain 1 23 30 26.0 4e-06 1 CL0167
Cotton_A_14126_CDS 379 408 378 409 PF00641.18 zf-RanBP Domain 2 29 30 26.1 3.8e-06 1 CL0167
Cotton_A_14126_CDS 424 454 424 455 PF00641.18 zf-RanBP Domain 1 29 30 26.5 2.8e-06 1 CL0167
Cotton_A_31646_CDS 23 122 21 122 PF01521.20 Fe-S_biosyn Family 3 111 111 73.1 1.9e-20 1 No_clan
Cotton_A_05016_CDS 22 133 20 133 PF04398.12 DUF538 Family 3 112 112 111.1 3.7e-32 1 No_clan
Cotton_A_32681_CDS 62 149 61 149 PF13837.6 Myb_DNA-bind_4 Domain 2 90 90 72.9 2e-20 1 CL0123
Cotton_A_02003_CDS 1 59 1 59 PF04783.12 DUF630 Family 1 59 59 76.8 1.1e-21 1 No_clan
Cotton_A_02003_CDS 183 487 183 488 PF04782.12 DUF632 Family 1 309 310 328.9 3.1e-98 1 No_clan
Cotton_A_05767_CDS 2 68 2 68 PF10203.9 Pet191_N Family 1 67 67 85.1 2.9e-24 1 No_clan
Cotton_A_06004_CDS 101 205 96 206 PF00651.31 BTB Domain 8 110 111 69.8 2e-19 1 CL0033
Cotton_A_04504_CDS 45 97 45 97 PF13445.6 zf-RING_UBOX Domain 1 39 39 30.6 2.5e-07 1 CL0229
Cotton_A_08196_CDS 711 739 710 740 PF13181.6 TPR_8 Repeat 2 30 34 13.0 0.09 1 CL0020
Cotton_A_31298_CDS 10 177 10 178 PF00071.22 Ras Domain 1 161 162 179.3 4.2e-53 1 CL0023
Cotton_A_32374_CDS 38 82 8 84 PF17067.5 RPS31 Family 53 96 99 40.2 2.8e-10 1 No_clan
Cotton_A_08844_CDS 41 172 34 174 PF00892.20 EamA Family 12 135 137 58.0 1.1e-15 1 CL0184
Cotton_A_08844_CDS 212 350 211 351 PF00892.20 EamA Family 2 136 137 36.5 4.7e-09 1 CL0184
Cotton_A_27291_CDS 14 96 9 97 PF14368.6 LTP_2 Family 5 96 97 28.1 1.6e-06 1 CL0482
Cotton_A_05814_CDS 312 506 309 507 PF07724.14 AAA_2 Domain 4 170 171 113.3 1.3e-32 1 CL0023
Cotton_A_05814_CDS 520 562 507 574 PF10431.9 ClpB_D2-small Domain 25 67 81 34.7 1.4e-08 1 CL0671
Cotton_A_20791_CDS 153 378 152 379 PF03000.14 NPH3 Family 2 257 258 182.0 1.6e-53 1 No_clan
Cotton_A_00920_CDS 30 159 29 159 PF01066.21 CDP-OH_P_transf Family 2 66 66 41.1 2.2e-10 1 No_clan
Cotton_A_32646_CDS 127 184 127 185 PF07939.11 DUF1685 Family 1 59 60 91.1 2.7e-26 1 No_clan
Cotton_A_16264_CDS 799 944 785 945 PF10377.9 ATG11 Family 11 128 129 71.4 6.9e-20 1 No_clan
Cotton_A_30316_CDS 11 70 4 73 PF00240.23 ubiquitin Domain 8 67 72 27.9 1.5e-06 1 CL0072
Cotton_A_33482_CDS 98 371 97 386 PF00069.25 Pkinase Domain 2 260 264 155.3 1.8e-45 1 CL0016
Cotton_A_02283_CDS 13 67 10 68 PF02701.15 zf-Dof Family 4 58 59 107.9 2.1e-31 1 No_clan
Cotton_A_07443_CDS 8 204 7 204 PF08325.10 WLM Domain 2 191 191 211.6 1e-62 1 CL0126
Cotton_A_02926_CDS 3 52 3 52 PF04135.12 Nop10p Family 1 52 52 76.1 1.6e-21 1 No_clan
Cotton_A_15962_CDS 82 497 48 509 PF00067.22 p450 Domain 20 448 463 284.3 1.6e-84 1 No_clan
Cotton_A_19296_CDS 192 215 186 215 PF01535.20 PPR Family 8 31 31 10.4 0.62 1 CL0020
Cotton_A_19296_CDS 250 282 249 282 PF12854.7 PPR_1 Repeat 2 34 34 30.1 2.7e-07 1 CL0020
Cotton_A_19296_CDS 288 336 288 337 PF13041.6 PPR_2 Repeat 1 49 50 59.6 2.6e-16 1 CL0020
Cotton_A_19296_CDS 355 387 354 387 PF12854.7 PPR_1 Repeat 2 34 34 45.6 4e-12 1 CL0020
Cotton_A_19296_CDS 393 442 393 442 PF13041.6 PPR_2 Repeat 1 50 50 63.5 1.5e-17 1 CL0020
Cotton_A_19296_CDS 459 491 459 492 PF12854.7 PPR_1 Repeat 1 33 34 41.9 5.7e-11 1 CL0020
Cotton_A_19296_CDS 498 547 498 547 PF13041.6 PPR_2 Repeat 1 50 50 64.6 7.1e-18 1 CL0020
Cotton_A_19296_CDS 568 616 568 617 PF13041.6 PPR_2 Repeat 1 49 50 48.3 8.1e-13 1 CL0020
Cotton_A_19296_CDS 635 666 634 667 PF12854.7 PPR_1 Repeat 2 33 34 33.9 1.9e-08 1 CL0020
Cotton_A_19296_CDS 677 705 676 706 PF01535.20 PPR Family 2 30 31 28.4 1.1e-06 1 CL0020
Cotton_A_17731_CDS 225 267 225 268 PF06203.14 CCT Motif 1 43 44 60.0 1.7e-16 1 CL0281
Cotton_A_25635_CDS 95 353 95 353 PF00069.25 Pkinase Domain 1 264 264 241.6 8.7e-72 1 CL0016
Cotton_A_25635_CDS 401 461 398 462 PF13499.6 EF-hand_7 Domain 4 70 71 40.1 3.7e-10 1 CL0220
Cotton_A_25635_CDS 471 533 470 533 PF13499.6 EF-hand_7 Domain 2 71 71 58.5 6.7e-16 1 CL0220
Cotton_A_12967_CDS 151 341 150 341 PF00687.21 Ribosomal_L1 Domain 1 204 204 168.7 1.4e-49 1 No_clan
Cotton_A_39420_CDS 11 47 10 49 PF00319.18 SRF-TF Domain 2 38 48 51.3 5.8e-14 1 No_clan
Cotton_A_15696_CDS 37 269 37 269 PF00182.19 Glyco_hydro_19 Domain 1 232 232 362.9 8.6e-109 1 CL0037
Cotton_A_28214_CDS 104 432 104 433 PF01546.28 Peptidase_M20 Family 1 206 207 123.0 1.3e-35 1 CL0035
Cotton_A_21813_CDS 1 155 1 155 PF00407.19 Bet_v_1 Domain 1 151 151 79.9 1.7e-22 1 CL0209
Cotton_A_02565_CDS 53 103 51 103 PF04554.13 Extensin_2 Family 6 58 58 28.2 1.5e-06 1 No_clan
Cotton_A_02565_CDS 71 113 71 113 PF04554.13 Extensin_2 Family 14 58 58 25.4 1.1e-05 1 No_clan
Cotton_A_02565_CDS 91 133 91 133 PF04554.13 Extensin_2 Family 14 58 58 27.2 3.1e-06 1 No_clan
Cotton_A_02565_CDS 131 173 131 173 PF04554.13 Extensin_2 Family 14 58 58 27.5 2.4e-06 1 No_clan
Cotton_A_03293_CDS 6 178 6 178 PF03446.15 NAD_binding_2 Domain 1 158 158 159.3 8.1e-47 1 CL0063
Cotton_A_03293_CDS 183 476 183 476 PF00393.19 6PGD Domain 1 289 289 420.6 3.1e-126 1 CL0106
Cotton_A_20282_CDS 36 147 32 148 PF07732.15 Cu-oxidase_3 Domain 5 118 119 141.7 9.9e-42 1 CL0026
Cotton_A_20282_CDS 161 308 158 308 PF00394.22 Cu-oxidase Domain 4 159 159 148.8 1.4e-43 1 CL0026
Cotton_A_20282_CDS 408 539 406 540 PF07731.14 Cu-oxidase_2 Domain 3 136 137 136.5 4.8e-40 1 CL0026
Cotton_A_12766_CDS 3 206 1 209 PF00195.19 Chal_sti_synt_N Domain 10 210 225 294.5 4.3e-88 1 CL0046
Cotton_A_25925_CDS 79 196 79 197 PF01565.23 FAD_binding_4 Domain 1 117 139 72.5 2.7e-20 1 CL0077
Cotton_A_02783_CDS 10 57 10 57 PF00319.18 SRF-TF Domain 1 48 48 86.2 7.3e-25 1 No_clan
Cotton_A_15691_CDS 196 234 196 234 PF04810.15 zf-Sec23_Sec24 Domain 1 39 39 33.7 2.7e-08 1 No_clan
Cotton_A_15691_CDS 276 505 273 515 PF04811.15 Sec23_trunk Domain 4 233 243 61.9 6.6e-17 1 CL0128
Cotton_A_15691_CDS 522 613 520 614 PF08033.12 Sec23_BS Domain 3 95 96 44.7 1.7e-11 1 No_clan
Cotton_A_15691_CDS 627 723 625 724 PF04815.15 Sec23_helical Domain 3 102 103 45.3 5.8e-12 1 No_clan
Cotton_A_01589_CDS 86 264 86 265 PF16994.5 Glyco_trans_4_5 Family 1 170 171 219.3 2.4e-65 1 CL0113
Cotton_A_01589_CDS 274 453 270 453 PF00534.20 Glycos_transf_1 Family 6 172 172 68.4 5.3e-19 1 CL0113
Cotton_A_17496_CDS 55 304 54 304 PF05153.15 MIOX Family 2 249 249 413.9 2.4e-124 1 CL0237
Cotton_A_15184_CDS 5 136 4 136 PF02365.15 NAM Family 2 126 126 95.3 5.1e-27 1 No_clan
Cotton_A_00288_CDS 253 275 252 276 PF13516.6 LRR_6 Repeat 2 23 24 14.3 0.031 1 CL0022
Cotton_A_00288_CDS 329 351 329 352 PF13516.6 LRR_6 Repeat 2 23 24 14.5 0.028 1 CL0022
Cotton_A_00288_CDS 358 377 354 377 PF13516.6 LRR_6 Repeat 5 23 24 9.8 0.86 1 CL0022
Cotton_A_00288_CDS 407 429 406 429 PF13516.6 LRR_6 Repeat 2 24 24 20.3 0.00038 1 CL0022
Cotton_A_00288_CDS 537 557 533 557 PF13516.6 LRR_6 Repeat 5 24 24 10.9 0.39 1 CL0022
Cotton_A_29435_CDS 2 54 1 66 PF00656.22 Peptidase_C14 Domain 50 99 248 32.8 6.5e-08 1 CL0093
Cotton_A_29435_CDS 88 167 70 171 PF00656.22 Peptidase_C14 Domain 169 244 248 42.2 8.8e-11 1 CL0093
Cotton_A_29435_CDS 192 406 183 411 PF00656.22 Peptidase_C14 Domain 41 243 248 109.6 2.3e-31 1 CL0093
Cotton_A_03529_CDS 31 107 31 112 PF07651.16 ANTH Domain 1 76 277 86.3 1.7e-24 1 CL0009
Cotton_A_35730_CDS 11 200 10 207 PF03094.15 Mlo Family 2 189 479 236.6 3.9e-70 1 No_clan
Cotton_A_35359_CDS 28 270 28 270 PF13561.6 adh_short_C2 Domain 1 234 234 192.1 1e-56 1 CL0063
Cotton_A_01077_CDS 28 114 28 114 PF03101.15 FAR1 Domain 1 90 90 100.7 5.6e-29 1 CL0274
Cotton_A_01077_CDS 226 319 226 320 PF10551.9 MULE Domain 1 95 96 97.1 6.2e-28 1 CL0219
Cotton_A_01077_CDS 513 540 497 542 PF04434.17 SWIM Domain 11 38 40 35.7 4.8e-09 1 No_clan
Cotton_A_07930_CDS 69 148 68 148 PF04969.16 CS Domain 2 76 76 30.0 8.1e-07 1 CL0190
Cotton_A_28288_CDS 171 202 161 206 PF13812.6 PPR_3 Repeat 28 59 63 20.2 0.00046 1 CL0020
Cotton_A_28288_CDS 227 264 227 265 PF13041.6 PPR_2 Repeat 1 38 50 40.8 1.8e-10 1 CL0020
Cotton_A_28288_CDS 266 310 265 311 PF13041.6 PPR_2 Repeat 5 49 50 46.1 4.1e-12 1 CL0020
Cotton_A_28288_CDS 329 361 328 361 PF12854.7 PPR_1 Repeat 2 34 34 29.4 4.9e-07 1 CL0020
Cotton_A_28288_CDS 367 417 367 417 PF13041.6 PPR_2 Repeat 1 50 50 67.7 7.5e-19 1 CL0020
Cotton_A_28288_CDS 442 469 441 470 PF01535.20 PPR Family 2 29 31 20.9 0.00029 1 CL0020
Cotton_A_28288_CDS 477 506 476 506 PF01535.20 PPR Family 2 31 31 28.7 9.5e-07 1 CL0020
Cotton_A_28288_CDS 508 557 508 557 PF13041.6 PPR_2 Repeat 1 50 50 53.5 1.9e-14 1 CL0020
Cotton_A_28288_CDS 578 625 578 627 PF13041.6 PPR_2 Repeat 1 48 50 46.3 3.7e-12 1 CL0020
Cotton_A_05861_CDS 52 588 51 589 PF10510.9 PIG-S Family 2 511 512 433.3 1.4e-129 1 No_clan
Cotton_A_15692_CDS 93 150 90 157 PF01248.26 Ribosomal_L7Ae Domain 33 87 95 28.6 8.9e-07 1 CL0101
Cotton_A_09357_CDS 117 206 117 206 PF00447.17 HSF_DNA-bind Domain 1 96 96 103.4 7.8e-30 1 CL0123
Cotton_A_35193_CDS 102 517 91 522 PF00067.22 p450 Domain 31 458 463 248.9 8.8e-74 1 No_clan
Cotton_A_26401_CDS 76 112 74 117 PF00646.33 F-box Domain 3 39 48 35.2 7.8e-09 1 CL0271
Cotton_A_19675_CDS 83 232 82 254 PF00069.25 Pkinase Domain 2 146 264 122.9 1.5e-35 1 CL0016
Cotton_A_19675_CDS 297 403 281 403 PF00069.25 Pkinase Domain 154 264 264 67.4 1.2e-18 1 CL0016
Cotton_A_09513_CDS 110 434 92 445 PF00266.19 Aminotran_5 Domain 19 316 371 107.0 1e-30 1 CL0061
Cotton_A_01765_CDS 25 132 25 149 PF00561.20 Abhydrolase_1 Domain 1 107 257 66.1 3.6e-18 1 CL0028
Cotton_A_18025_CDS 512 646 512 677 PF04548.16 AIG1 Domain 1 133 212 71.2 7.4e-20 1 CL0023
Cotton_A_18025_CDS 878 1142 877 1143 PF11886.8 TOC159_MAD Family 2 266 267 389.2 6.3e-117 1 No_clan
Cotton_A_33834_CDS 55 104 54 104 PF00010.26 HLH Domain 2 53 53 51.4 7.5e-14 1 No_clan
Cotton_A_30902_CDS 217 259 217 260 PF12552.8 DUF3741 Family 1 43 45 32.0 8.6e-08 1 No_clan
Cotton_A_30902_CDS 764 911 763 911 PF14309.6 DUF4378 Family 2 165 165 96.7 1.8e-27 1 No_clan
Cotton_A_08581_CDS 13 274 13 274 PF00069.25 Pkinase Domain 1 264 264 211.6 1.3e-62 1 CL0016
Cotton_A_16305_CDS 172 214 171 214 PF13639.6 zf-RING_2 Domain 2 44 44 53.5 2.3e-14 1 CL0229
Cotton_A_13672_CDS 58 153 58 153 PF06749.12 DUF1218 Family 1 91 91 99.6 1.1e-28 1 No_clan
Cotton_A_40542_CDS 32 151 27 162 PF04791.16 LMBR1 Family 100 225 510 79.1 3.3e-22 1 No_clan
Cotton_A_19724_CDS 20 180 17 180 PF03248.13 Rer1 Family 4 171 171 241.6 3.7e-72 1 No_clan
Cotton_A_23435_CDS 148 306 148 307 PF00484.19 Pro_CA Domain 1 155 156 141.6 2.4e-41 1 No_clan
Cotton_A_23119_CDS 4 95 2 97 PF00153.27 Mito_carr Family 5 94 97 60.5 1.1e-16 1 No_clan
Cotton_A_23119_CDS 103 200 100 203 PF00153.27 Mito_carr Family 4 93 97 74.1 6.4e-21 1 No_clan
Cotton_A_23119_CDS 215 296 208 298 PF00153.27 Mito_carr Family 9 92 97 78.9 2e-22 1 No_clan
Cotton_A_14365_CDS 82 165 81 165 PF14159.6 CAAD Domain 2 85 85 105.5 9.2e-31 1 No_clan
Cotton_A_01030_CDS 44 460 44 475 PF00067.22 p450 Domain 1 436 463 235.7 9.2e-70 1 No_clan
Cotton_A_31060_CDS 22 61 20 64 PF00249.31 Myb_DNA-binding Domain 3 42 46 39.4 4.9e-10 1 CL0123
Cotton_A_34823_CDS 29 80 28 87 PF01592.16 NifU_N Family 2 53 129 52.0 7.5e-14 1 CL0233
Cotton_A_12783_CDS 4 63 3 64 PF05208.13 ALG3 Family 2 61 358 84.3 1.1e-23 1 CL0111
Cotton_A_26385_CDS 19 233 17 251 PF00022.19 Actin Family 4 206 407 110.9 5.3e-32 1 CL0108
Cotton_A_26385_CDS 589 717 542 719 PF00022.19 Actin Family 269 404 407 87.7 5.8e-25 1 CL0108
Cotton_A_27798_CDS 37 171 34 171 PF04535.12 DUF588 Domain 5 150 150 104.8 3.3e-30 1 CL0396
Cotton_A_14512_CDS 12 211 10 235 PF00378.20 ECH_1 Domain 3 201 251 142.2 1.7e-41 1 CL0127
Cotton_A_14512_CDS 310 488 310 489 PF02737.18 3HCDH_N Domain 1 179 180 195.7 5.8e-58 1 CL0063
Cotton_A_14512_CDS 491 584 491 584 PF00725.22 3HCDH Domain 1 97 97 67.5 1.2e-18 1 CL0106
Cotton_A_06079_CDS 1 69 1 111 PF00069.25 Pkinase Domain 164 232 264 37.9 1.2e-09 1 CL0016
Cotton_A_00516_CDS 5 140 5 140 PF03952.16 Enolase_N Domain 1 131 131 185.6 3.7e-55 1 CL0227
Cotton_A_00516_CDS 149 440 148 442 PF00113.22 Enolase_C Domain 2 294 296 530.4 1.1e-159 1 CL0256
Cotton_A_01656_CDS 86 167 83 167 PF14389.6 Lzipper-MIP1 Family 5 84 84 86.8 9.2e-25 1 No_clan
Cotton_A_01656_CDS 425 558 423 558 PF04784.14 DUF547 Family 3 123 123 145.9 5.4e-43 1 No_clan
Cotton_A_02147_CDS 78 123 77 126 PF13833.6 EF-hand_8 Domain 2 50 55 21.3 0.00017 1 CL0220
Cotton_A_02147_CDS 136 201 135 207 PF13499.6 EF-hand_7 Domain 2 65 71 34.7 1.8e-08 1 CL0220
Cotton_A_21980_CDS 20 87 20 87 PF00550.25 PP-binding Domain 1 67 67 49.3 4.7e-13 1 CL0314
Cotton_A_01231_CDS 46 82 43 82 PF08263.12 LRRNT_2 Family 4 41 41 32.3 8.9e-08 1 No_clan
Cotton_A_01231_CDS 90 146 85 146 PF13855.6 LRR_8 Repeat 6 61 61 28.5 9.6e-07 1 CL0022
Cotton_A_01231_CDS 256 277 255 277 PF00560.33 LRR_1 Repeat 2 23 23 12.4 0.18 1 CL0022
Cotton_A_01231_CDS 616 674 614 674 PF13855.6 LRR_8 Repeat 3 61 61 33.3 3e-08 1 CL0022
Cotton_A_01231_CDS 920 956 917 956 PF08263.12 LRRNT_2 Family 4 41 41 33.0 5.4e-08 1 No_clan
Cotton_A_01231_CDS 1100 1121 1099 1121 PF00560.33 LRR_1 Repeat 2 23 23 12.4 0.18 1 CL0022
Cotton_A_01231_CDS 1442 1500 1440 1500 PF13855.6 LRR_8 Repeat 3 61 61 28.7 8.1e-07 1 CL0022
Cotton_A_37938_CDS 33 340 32 344 PF00657.22 Lipase_GDSL Family 2 196 200 44.3 1.9e-11 1 CL0264
Cotton_A_08576_CDS 33 51 33 51 PF08137.12 DVL Family 1 19 19 42.9 3e-11 1 No_clan
Cotton_A_36396_CDS 41 282 37 286 PF00141.23 peroxidase Domain 2 225 229 246.1 3.4e-73 1 CL0617
Cotton_A_00318_CDS 100 202 100 219 PF11935.8 DUF3453 Family 1 91 226 50.7 1.8e-13 1 No_clan
Cotton_A_09643_CDS 139 423 139 423 PF00069.25 Pkinase Domain 1 264 264 229.5 4.5e-68 1 CL0016
Cotton_A_15090_CDS 185 253 184 260 PF00849.22 PseudoU_synth_2 Family 2 72 160 36.3 5.6e-09 1 CL0649
Cotton_A_04189_CDS 37 139 36 140 PF03227.16 GILT Family 2 105 106 103.4 7e-30 1 CL0172
Cotton_A_02290_CDS 1 73 1 75 PF01095.19 Pectinesterase Family 171 243 298 72.3 2.6e-20 1 CL0268
Cotton_A_01369_CDS 117 450 116 459 PF03016.15 Exostosin Family 2 293 300 266.9 2.1e-79 1 No_clan
Cotton_A_01168_CDS 52 384 50 384 PF16113.5 ECH_2 Domain 3 334 334 368.7 3.4e-110 1 CL0127
Cotton_A_34382_CDS 390 760 390 761 PF03514.14 GRAS Family 1 373 374 386.1 1.5e-115 1 CL0063
Cotton_A_24266_CDS 142 211 142 212 PF00076.22 RRM_1 Domain 1 69 70 70.6 7e-20 1 CL0221
Cotton_A_24266_CDS 236 306 236 306 PF00076.22 RRM_1 Domain 1 70 70 69.2 2e-19 1 CL0221
Cotton_A_00561_CDS 123 508 122 509 PF00999.21 Na_H_Exchanger Family 2 380 381 229.8 4.5e-68 1 CL0064
Cotton_A_00561_CDS 540 663 540 665 PF02254.18 TrkA_N Domain 1 114 116 70.9 1e-19 1 CL0063
Cotton_A_14885_CDS 36 78 35 79 PF00658.18 PABP Family 2 44 68 46.0 4.3e-12 1 No_clan
Cotton_A_01009_CDS 10 23 9 24 PF07145.15 PAM2 Motif 2 15 18 21.4 0.00013 1 No_clan
Cotton_A_08570_CDS 215 515 201 517 PF10250.9 O-FucT Family 22 333 336 44.2 2e-11 1 CL0113
Cotton_A_15305_CDS 69 148 68 149 PF03366.16 YEATS Family 2 80 81 106.5 5.2e-31 1 CL0154
Cotton_A_01676_CDS 28 73 28 73 PF00249.31 Myb_DNA-binding Domain 1 46 46 52.4 4.5e-14 1 CL0123
Cotton_A_38779_CDS 9 91 9 121 PF14226.6 DIOX_N Family 1 80 118 44.8 1.8e-11 1 CL0029
Cotton_A_38779_CDS 166 262 156 263 PF03171.20 2OG-FeII_Oxy Domain 4 100 101 57.0 2.1e-15 1 CL0029
Cotton_A_14674_CDS 33 128 33 130 PF14363.6 AAA_assoc Family 1 94 96 39.2 6.7e-10 1 No_clan
Cotton_A_14674_CDS 240 381 239 382 PF00004.29 AAA Domain 2 131 132 65.6 5.9e-18 1 CL0023
Cotton_A_07261_CDS 28 62 27 65 PF12937.7 F-box-like Domain 2 35 48 27.3 2.5e-06 1 CL0271
Cotton_A_07261_CDS 238 260 237 261 PF13516.6 LRR_6 Repeat 2 23 24 9.3 1.3 1 CL0022
Cotton_A_07261_CDS 506 526 506 526 PF13516.6 LRR_6 Repeat 4 24 24 13.1 0.075 1 CL0022
Cotton_A_07261_CDS 534 551 528 551 PF13516.6 LRR_6 Repeat 7 24 24 12.3 0.14 1 CL0022
Cotton_A_27730_CDS 7 205 1 208 PF03959.13 FSH1 Domain 3 209 212 160.7 3.8e-47 1 CL0028
Cotton_A_23943_CDS 88 420 88 421 PF01546.28 Peptidase_M20 Family 1 206 207 123.1 1.2e-35 1 CL0035
Cotton_A_23943_CDS 206 309 200 317 PF07687.14 M20_dimer Domain 7 99 109 24.8 1.6e-05 1 No_clan
Cotton_A_28797_CDS 147 316 136 317 PF08325.10 WLM Domain 11 190 191 147.6 4.5e-43 1 CL0126
Cotton_A_28797_CDS 570 645 568 653 PF09409.10 PUB Domain 3 73 82 61.1 7.4e-17 1 No_clan
Cotton_A_13090_CDS 52 183 45 184 PF00179.26 UQ_con Domain 8 139 140 135.3 1.1e-39 1 CL0208
Cotton_A_17491_CDS 322 361 317 362 PF00010.26 HLH Domain 10 52 53 26.7 4e-06 1 No_clan
Cotton_A_09193_CDS 166 213 164 213 PF00010.26 HLH Domain 4 53 53 34.7 1.3e-08 1 No_clan
Cotton_A_23009_CDS 42 139 42 152 PF02548.15 Pantoate_transf Family 1 98 259 128.4 3.1e-37 1 CL0151
Cotton_A_23009_CDS 176 349 172 350 PF02548.15 Pantoate_transf Family 91 258 259 215.8 6.4e-64 1 CL0151
Cotton_A_19939_CDS 24 381 24 382 PF04185.14 Phosphoesterase Family 1 355 356 369.0 2.5e-110 1 CL0088
Cotton_A_22859_CDS 31 187 31 189 PF01652.18 IF4E Domain 1 157 159 181.6 8.6e-54 1 CL0625
Cotton_A_28325_CDS 236 503 235 503 PF00732.19 GMC_oxred_N Domain 2 296 296 218.8 1e-64 1 CL0063
Cotton_A_28325_CDS 597 727 587 731 PF05199.13 GMC_oxred_C Domain 21 140 144 78.8 5.5e-22 1 No_clan
Cotton_A_11909_CDS 3 131 1 133 PF00790.19 VHS Domain 8 139 141 112.6 1.3e-32 1 CL0009
Cotton_A_11909_CDS 193 267 192 268 PF03127.14 GAT Domain 2 76 77 60.8 1.1e-16 1 No_clan
Cotton_A_19420_CDS 29 71 29 71 PF00097.25 zf-C3HC4 Domain 1 41 41 27.4 2.3e-06 1 CL0229
Cotton_A_11377_CDS 214 329 214 330 PF00175.21 NAD_binding_1 Domain 1 108 109 103.5 9.5e-30 1 CL0091
Cotton_A_26845_CDS 42 229 40 229 PF00069.25 Pkinase Domain 3 180 264 129.1 1.9e-37 1 CL0016
Cotton_A_34649_CDS 60 196 57 199 PF00153.27 Mito_carr Family 4 93 97 59.5 2.2e-16 1 No_clan
Cotton_A_34649_CDS 208 307 205 310 PF00153.27 Mito_carr Family 4 93 97 45.3 6.3e-12 1 No_clan
Cotton_A_34649_CDS 322 410 318 412 PF00153.27 Mito_carr Family 6 95 97 64.3 7.1e-18 1 No_clan
Cotton_A_28003_CDS 10 104 9 104 PF13233.6 Complex1_LYR_2 Family 2 82 82 37.9 2.3e-09 1 CL0491
Cotton_A_15440_CDS 63 134 23 136 PF04618.12 HD-ZIP_N Domain 25 102 110 26.5 7.1e-06 1 No_clan
Cotton_A_15440_CDS 172 226 171 227 PF00046.29 Homeodomain Domain 2 56 57 56.3 2.1e-15 1 CL0123
Cotton_A_15440_CDS 228 262 228 263 PF02183.18 HALZ Coiled-coil 1 42 43 40.5 2.4e-10 1 No_clan
Cotton_A_23387_CDS 2 39 1 40 PF08263.12 LRRNT_2 Family 3 40 41 41.9 9e-11 1 No_clan
Cotton_A_23387_CDS 1488 1526 1487 1527 PF08263.12 LRRNT_2 Family 2 40 41 39.9 3.7e-10 1 No_clan
Cotton_A_07142_CDS 8 134 7 135 PF01408.22 GFO_IDH_MocA Family 2 119 120 92.3 3.7e-26 1 CL0063
Cotton_A_07142_CDS 148 255 147 257 PF02894.17 GFO_IDH_MocA_C Domain 2 114 116 53.5 2.2e-14 1 CL0139
Cotton_A_25288_CDS 56 119 55 119 PF00226.31 DnaJ Domain 2 63 63 74.2 6.5e-21 1 CL0392
Cotton_A_22973_CDS 8 72 2 73 PF05922.16 Inhibitor_I9 Domain 16 81 82 44.8 1.5e-11 1 CL0570
Cotton_A_22973_CDS 94 544 93 545 PF00082.22 Peptidase_S8 Domain 2 298 298 160.0 7.8e-47 1 No_clan
Cotton_A_22973_CDS 600 697 600 697 PF17766.1 fn3_6 Domain 1 99 99 91.3 3.5e-26 1 CL0159
Cotton_A_12067_CDS 20 192 19 194 PF03208.19 PRA1 Family 2 141 143 149.1 6.4e-44 1 No_clan
Cotton_A_17322_CDS 317 354 316 355 PF00400.32 WD40 Repeat 2 37 38 12.8 0.18 1 CL0186
Cotton_A_00771_CDS 5 95 5 97 PF02362.21 B3 Family 1 98 101 47.3 1.4e-12 1 CL0405
Cotton_A_00771_CDS 241 331 238 333 PF02362.21 B3 Family 4 99 101 63.8 1e-17 1 CL0405
Cotton_A_16451_CDS 19 83 19 84 PF01918.21 Alba Family 1 66 67 70.7 6.7e-20 1 CL0441
Cotton_A_30584_CDS 5 73 5 74 PF00076.22 RRM_1 Domain 1 69 70 33.7 2.4e-08 1 CL0221
Cotton_A_25995_CDS 119 213 119 214 PF08241.12 Methyltransf_11 Domain 1 95 96 66.5 2.4e-18 1 CL0063
Cotton_A_27015_CDS 90 190 88 190 PF02844.15 GARS_N Domain 3 90 90 100.5 6.7e-29 1 CL0483
Cotton_A_27015_CDS 191 385 191 385 PF01071.19 GARS_A Domain 1 194 194 270.1 1e-80 1 CL0179
Cotton_A_27015_CDS 420 513 420 513 PF02843.16 GARS_C Domain 1 80 80 97.1 5.3e-28 1 CL0105
Cotton_A_23414_CDS 37 135 37 135 PF08551.10 DUF1751 Domain 1 99 99 111.3 2.6e-32 1 CL0207
Cotton_A_32393_CDS 64 214 63 214 PF00190.22 Cupin_1 Domain 2 151 151 173.7 1.9e-51 1 CL0029
Cotton_A_23818_CDS 96 284 96 284 PF07816.11 DUF1645 Family 1 191 191 105.3 5.8e-30 1 No_clan
Cotton_A_33935_CDS 1 370 1 370 PF00297.22 Ribosomal_L3 Family 1 369 369 642.2 2.2e-193 1 CL0575
Cotton_A_24804_CDS 141 333 140 333 PF00926.19 DHBP_synthase Family 2 192 192 285.6 1.4e-85 1 No_clan
Cotton_A_24804_CDS 346 509 342 509 PF00925.20 GTP_cyclohydro2 Family 5 163 163 234.7 3.7e-70 1 No_clan
Cotton_A_10012_CDS 107 135 105 136 PF06200.14 tify Domain 4 33 34 46.0 2.4e-12 1 No_clan
Cotton_A_10012_CDS 171 195 171 196 PF09425.10 CCT_2 Motif 1 25 26 49.3 3.1e-13 1 CL0281
Cotton_A_32609_CDS 85 223 85 226 PF01966.22 HD Family 1 119 122 44.2 1.9e-11 1 CL0237
Cotton_A_17056_CDS 96 262 84 322 PF02153.17 PDH Family 12 179 258 54.5 8.1e-15 1 CL0063
Cotton_A_13572_CDS 87 181 87 182 PF06749.12 DUF1218 Family 1 90 91 47.7 1.6e-12 1 No_clan
Cotton_A_26044_CDS 1 31 1 39 PF08325.10 WLM Domain 87 117 191 45.6 8e-12 1 CL0126
Cotton_A_27233_CDS 89 213 89 257 PF07786.12 DUF1624 Family 1 118 223 29.8 4.2e-07 1 CL0316
Cotton_A_33830_CDS 102 260 101 263 PF02518.26 HATPase_c Domain 2 109 112 47.3 2.4e-12 1 CL0025
Cotton_A_33830_CDS 266 764 266 774 PF00183.18 HSP90 Family 1 512 517 638.4 1e-191 1 No_clan
Cotton_A_22643_CDS 101 272 91 274 PF00481.21 PP2C Family 12 176 258 129.6 1.6e-37 1 CL0238
Cotton_A_07236_CDS 7 170 6 172 PF06364.12 DUF1068 Family 2 166 168 241.6 3.8e-72 1 No_clan
Cotton_A_17594_CDS 41 488 38 488 PF05602.12 CLPTM1 Family 4 429 429 499.3 1e-149 1 No_clan
Cotton_A_40803_CDS 1 89 1 89 PF03477.16 ATP-cone Domain 1 86 86 58.4 8.1e-16 1 No_clan
Cotton_A_40803_CDS 142 212 141 213 PF00317.21 Ribonuc_red_lgN Domain 2 82 83 87.5 4.3e-25 1 No_clan
Cotton_A_40803_CDS 216 757 216 757 PF02867.15 Ribonuc_red_lgC Family 1 524 524 623.4 2.9e-187 1 CL0339
Cotton_A_09611_CDS 147 210 146 210 PF02319.20 E2F_TDP Domain 2 71 71 86.1 1.3e-24 1 CL0123
Cotton_A_09611_CDS 226 325 226 326 PF16421.5 E2F_CC-MB Domain 1 94 95 119.0 8.3e-35 1 No_clan
Cotton_A_12123_CDS 13 148 11 148 PF04652.16 Vta1 Family 4 145 145 147.4 2.8e-43 1 No_clan
Cotton_A_12123_CDS 386 423 386 423 PF18097.1 Vta1_C Domain 1 38 38 40.4 1.7e-10 1 No_clan
Cotton_A_31178_CDS 178 306 165 322 PF00931.22 NB-ARC Domain 15 147 252 57.1 1.5e-15 1 CL0023
Cotton_A_31178_CDS 348 500 346 537 PF00931.22 NB-ARC Domain 3 160 252 80.8 8.8e-23 1 CL0023
Cotton_A_31178_CDS 544 750 528 768 PF00931.22 NB-ARC Domain 18 230 252 132.0 2.1e-38 1 CL0023
Cotton_A_28227_CDS 27 79 18 80 PF06876.12 SCRL Domain 16 66 67 33.1 4.8e-08 1 CL0054
Cotton_A_20947_CDS 4 98 4 108 PF00168.30 C2 Domain 1 92 103 47.6 1.6e-12 1 CL0154
Cotton_A_18965_CDS 32 71 30 71 PF08263.12 LRRNT_2 Family 3 41 41 30.7 2.8e-07 1 No_clan
Cotton_A_18965_CDS 96 109 95 112 PF13516.6 LRR_6 Repeat 2 15 24 12.1 0.16 1 CL0022
Cotton_A_18965_CDS 143 156 141 158 PF13516.6 LRR_6 Repeat 3 16 24 10.5 0.54 1 CL0022
Cotton_A_18965_CDS 167 225 167 225 PF13855.6 LRR_8 Repeat 1 61 61 28.6 9e-07 1 CL0022
Cotton_A_18965_CDS 421 693 420 693 PF07714.17 Pkinase_Tyr Domain 2 259 259 146.9 6.4e-43 1 CL0016
Cotton_A_03033_CDS 104 156 81 157 PF00111.27 Fer2 Domain 29 77 78 32.7 5.2e-08 1 CL0486
Cotton_A_15576_CDS 74 215 74 219 PF16363.5 GDP_Man_Dehyd Domain 1 148 332 115.2 4e-33 1 CL0063
Cotton_A_32056_CDS 84 413 74 413 PF05060.14 MGAT2 Family 13 349 349 351.6 4.4e-105 1 CL0110
Cotton_A_10809_CDS 4 260 4 260 PF00069.25 Pkinase Domain 1 264 264 241.8 7.9e-72 1 CL0016
Cotton_A_38246_CDS 30 170 28 170 PF04043.15 PMEI Domain 5 154 154 85.7 4.1e-24 1 No_clan
Cotton_A_38246_CDS 221 514 221 514 PF01095.19 Pectinesterase Family 1 298 298 470.3 1.6e-141 1 CL0268
Cotton_A_34521_CDS 61 177 6 206 PF01925.19 TauE Family 3 110 236 44.7 1.2e-11 1 CL0292
Cotton_A_34521_CDS 229 420 223 422 PF01925.19 TauE Family 60 234 236 46.6 3.1e-12 1 CL0292
Cotton_A_14122_CDS 1 67 1 67 PF11820.8 DUF3339 Family 1 67 67 119.6 4.7e-35 1 No_clan
Cotton_A_07740_CDS 9 97 9 99 PF03195.14 LOB Family 1 88 99 119.0 1.1e-34 1 No_clan
Cotton_A_32340_CDS 141 425 141 425 PF00069.25 Pkinase Domain 1 264 264 214.0 2.3e-63 1 CL0016
Cotton_A_16634_CDS 43 300 42 300 PF00069.25 Pkinase Domain 2 264 264 237.7 1.4e-70 1 CL0016
Cotton_A_20394_CDS 35 79 34 79 PF05051.13 COX17 Family 2 48 48 71.2 6.6e-20 1 CL0351
Cotton_A_00455_CDS 34 223 34 223 PF04427.18 Brix Domain 1 193 193 69.8 3.2e-19 1 CL0458
Cotton_A_26446_CDS 16 50 16 51 PF00320.27 GATA Domain 1 35 36 60.4 8.8e-17 1 CL0167
Cotton_A_28366_CDS 96 209 96 209 PF03479.15 DUF296 Domain 1 107 107 102.1 2e-29 1 CL0615
Cotton_A_05379_CDS 103 158 103 159 PF00046.29 Homeodomain Domain 1 56 57 67.7 5.8e-19 1 CL0123
Cotton_A_05379_CDS 273 496 272 496 PF01852.19 START Domain 2 209 209 198.1 1.1e-58 1 CL0209
Cotton_A_30136_CDS 10 99 10 99 PF00447.17 HSF_DNA-bind Domain 1 96 96 105.6 1.5e-30 1 CL0123
Cotton_A_09781_CDS 54 362 54 362 PF03006.20 HlyIII Family 1 224 224 226.0 4.8e-67 1 CL0192
Cotton_A_34055_CDS 10 348 9 348 PF00657.22 Lipase_GDSL Family 2 200 200 51.9 8.8e-14 1 CL0264
Cotton_A_17185_CDS 33 437 33 437 PF03345.14 DDOST_48kD Family 1 409 415 432.4 1.6e-129 1 No_clan
Cotton_A_14124_CDS 183 256 183 257 PF03110.14 SBP Domain 1 74 75 108.8 1.2e-31 1 No_clan
Cotton_A_35634_CDS 1 72 1 74 PF00685.27 Sulfotransfer_1 Domain 179 243 267 42.2 6.6e-11 1 CL0023
Cotton_A_07192_CDS 145 373 145 400 PF00069.25 Pkinase Domain 1 212 264 62.4 4e-17 1 CL0016
Cotton_A_20413_CDS 12 91 12 92 PF03321.13 GH3 Family 1 80 527 81.1 8e-23 1 CL0378
Cotton_A_04196_CDS 14 83 12 84 PF00240.23 ubiquitin Domain 1 71 72 63.7 1e-17 1 CL0072
Cotton_A_04196_CDS 249 306 248 306 PF13855.6 LRR_8 Repeat 2 61 61 29.1 6.3e-07 1 CL0022
Cotton_A_06612_CDS 199 246 197 246 PF00010.26 HLH Domain 4 53 53 25.3 1.1e-05 1 No_clan
Cotton_A_06600_CDS 235 281 235 281 PF13445.6 zf-RING_UBOX Domain 1 39 39 32.6 5.9e-08 1 CL0229
Cotton_A_30389_CDS 60 133 59 136 PF03061.22 4HBT Domain 2 76 79 45.9 5.3e-12 1 CL0050
Cotton_A_15334_CDS 82 228 68 229 PF01553.21 Acyltransferase Family 12 134 135 59.4 2.7e-16 1 CL0228
Cotton_A_15334_CDS 239 312 239 312 PF16076.5 Acyltransf_C Family 1 74 74 78.4 3.2e-22 1 No_clan
Cotton_A_21965_CDS 14 142 3 143 PF00067.22 p450 Domain 208 330 463 51.4 7e-14 1 No_clan
Cotton_A_21965_CDS 149 213 146 229 PF00067.22 p450 Domain 377 442 463 47.3 1.2e-12 1 No_clan
Cotton_A_14845_CDS 199 239 195 239 PF00010.26 HLH Domain 10 53 53 30.5 2.6e-07 1 No_clan
Cotton_A_01769_CDS 56 162 56 164 PF14226.6 DIOX_N Family 1 116 118 76.2 3.3e-21 1 CL0029
Cotton_A_01769_CDS 249 346 245 346 PF03171.20 2OG-FeII_Oxy Domain 5 101 101 85.6 2.7e-24 1 CL0029
Cotton_A_08842_CDS 10 57 10 57 PF00319.18 SRF-TF Domain 1 48 48 81.7 1.8e-23 1 No_clan
Cotton_A_08842_CDS 70 125 60 130 PF01486.17 K-box Family 11 66 93 49.8 2.9e-13 1 No_clan
Cotton_A_16731_CDS 31 149 31 149 PF00188.26 CAP Domain 1 126 126 85.8 4.1e-24 1 CL0659
Cotton_A_34391_CDS 155 253 153 256 PF00175.21 NAD_binding_1 Domain 3 105 109 59.1 5.9e-16 1 CL0091
Cotton_A_20201_CDS 410 471 410 471 PF06886.11 TPX2 Family 1 57 57 67.4 9.7e-19 1 No_clan
Cotton_A_31602_CDS 15 94 15 94 PF14438.6 SM-ATX Domain 1 81 81 75.8 2.2e-21 1 CL0527
Cotton_A_25754_CDS 157 330 153 331 PF03352.13 Adenine_glyco Family 3 176 177 206.3 3e-61 1 No_clan
Cotton_A_10150_CDS 38 80 37 80 PF08263.12 LRRNT_2 Family 2 41 41 29.3 7.5e-07 1 No_clan
Cotton_A_10150_CDS 346 470 329 473 PF07714.17 Pkinase_Tyr Domain 32 153 259 60.3 1.7e-16 1 CL0016
Cotton_A_07690_CDS 75 124 74 125 PF00847.20 AP2 Domain 2 53 54 43.8 2.1e-11 1 CL0081
Cotton_A_26191_CDS 22 312 22 313 PF08392.12 FAE1_CUT1_RppA Family 1 289 290 350.1 9.2e-105 1 CL0046
Cotton_A_26191_CDS 329 410 325 411 PF08541.10 ACP_syn_III_C Domain 11 89 90 48.9 5.4e-13 1 CL0046
Cotton_A_30123_CDS 6 418 4 420 PF00022.19 Actin Family 4 403 407 280.1 2.3e-83 1 CL0108
Cotton_A_13186_CDS 26 253 26 265 PF13520.6 AA_permease_2 Family 1 220 425 97.8 6.2e-28 1 CL0062
Cotton_A_34800_CDS 93 225 91 226 PF00892.20 EamA Family 3 136 137 48.2 1.2e-12 1 CL0184
Cotton_A_18567_CDS 1 275 1 275 PF06246.12 Isy1 Family 1 255 255 281.1 8.3e-84 1 No_clan
Cotton_A_39072_CDS 7 75 7 76 PF00076.22 RRM_1 Domain 1 69 70 46.3 2.7e-12 1 CL0221
Cotton_A_07849_CDS 37 213 28 213 PF03798.16 TRAM_LAG1_CLN8 Domain 3 198 198 74.2 1.1e-20 1 No_clan
Cotton_A_36685_CDS 10 54 10 54 PF00571.28 CBS Domain 1 43 57 31.2 2.1e-07 1 No_clan
Cotton_A_03013_CDS 11 137 11 137 PF02365.15 NAM Family 1 126 126 129.7 1.1e-37 1 No_clan
Cotton_A_03532_CDS 79 171 15 179 PF02309.16 AUX_IAA Family 67 162 237 61.9 8.1e-17 1 CL0072
Cotton_A_05405_CDS 41 236 40 239 PF00349.21 Hexokinase_1 Domain 2 195 199 223.0 3.2e-66 1 CL0108
Cotton_A_00809_CDS 1 84 1 84 PF00916.20 Sulfate_transp Family 47 128 380 85.9 2.3e-24 1 CL0062
Cotton_A_25437_CDS 260 359 257 359 PF01399.27 PCI Domain 4 105 105 49.7 4.3e-13 1 CL0123
Cotton_A_25437_CDS 363 391 363 391 PF18005.1 eIF3m_C_helix Domain 1 29 29 40.0 2.3e-10 1 No_clan
Cotton_A_06811_CDS 160 277 148 278 PF15306.6 LIN37 Family 14 155 156 37.1 3.5e-09 1 No_clan
Cotton_A_09118_CDS 92 321 92 322 PF02485.21 Branch Family 1 246 247 278.0 6.5e-83 1 CL0110
Cotton_A_38585_CDS 105 305 102 325 PF00685.27 Sulfotransfer_1 Domain 6 204 267 25.8 6.7e-06 1 CL0023
Cotton_A_02311_CDS 1 75 1 76 PF02798.20 GST_N Domain 1 75 76 50.8 1.5e-13 1 CL0172
Cotton_A_36144_CDS 36 127 35 127 PF01657.17 Stress-antifung Family 2 91 95 52.2 7.3e-14 1 No_clan
Cotton_A_36254_CDS 1 56 1 56 PF02874.23 ATP-synt_ab_N Domain 18 69 69 53.7 2.1e-14 1 CL0275
Cotton_A_21235_CDS 7 154 1 155 PF00005.27 ABC_tran Domain 34 136 137 29.0 1.2e-06 1 CL0023
Cotton_A_21235_CDS 307 514 306 518 PF01061.24 ABC2_membrane Family 2 206 210 116.5 1e-33 1 CL0181
Cotton_A_21235_CDS 523 585 523 585 PF08370.11 PDR_assoc Family 1 65 65 75.7 1.8e-21 1 No_clan
Cotton_A_21235_CDS 657 808 657 809 PF00005.27 ABC_tran Domain 1 136 137 70.3 2.3e-19 1 CL0023
Cotton_A_21235_CDS 954 1141 954 1142 PF01061.24 ABC2_membrane Family 1 183 210 150.8 3.3e-44 1 CL0181
Cotton_A_27278_CDS 173 199 172 202 PF01535.20 PPR Family 2 28 31 12.7 0.12 1 CL0020
Cotton_A_27278_CDS 209 237 208 237 PF01535.20 PPR Family 3 31 31 15.2 0.018 1 CL0020
Cotton_A_27278_CDS 240 288 239 288 PF13041.6 PPR_2 Repeat 2 50 50 54.7 8.2e-15 1 CL0020
Cotton_A_27278_CDS 314 335 312 336 PF01535.20 PPR Family 3 24 31 11.8 0.22 1 CL0020
Cotton_A_27278_CDS 338 369 337 370 PF12854.7 PPR_1 Repeat 2 33 34 25.8 6.1e-06 1 CL0020
Cotton_A_27278_CDS 376 425 376 425 PF13041.6 PPR_2 Repeat 1 50 50 55.1 6.5e-15 1 CL0020
Cotton_A_27278_CDS 446 494 446 495 PF13041.6 PPR_2 Repeat 1 49 50 57.8 9.3e-16 1 CL0020
Cotton_A_27278_CDS 516 565 516 565 PF13041.6 PPR_2 Repeat 1 50 50 53.3 2.4e-14 1 CL0020
Cotton_A_27278_CDS 583 614 582 615 PF12854.7 PPR_1 Repeat 2 33 34 41.2 9.9e-11 1 CL0020
Cotton_A_19199_CDS 45 360 43 360 PF05910.12 DUF868 Family 3 279 279 292.9 2.7e-87 1 No_clan
Cotton_A_00357_CDS 24 177 24 178 PF06521.11 PAR1 Family 1 155 156 249.7 7.9e-75 1 No_clan
Cotton_A_27615_CDS 163 369 163 387 PF04577.14 DUF563 Family 1 190 209 70.6 2e-19 1 No_clan
Cotton_A_12733_CDS 46 127 46 134 PF01988.19 VIT1 Family 1 82 215 95.3 4.7e-27 1 No_clan
Cotton_A_12733_CDS 136 223 125 224 PF01988.19 VIT1 Family 127 214 215 67.1 1.9e-18 1 No_clan
Cotton_A_17082_CDS 64 426 64 427 PF01566.18 Nramp Family 1 357 358 409.8 8.8e-123 1 CL0062
Cotton_A_23548_CDS 76 366 76 379 PF01207.17 Dus Family 1 292 310 248.1 1e-73 1 CL0036
Cotton_A_21834_CDS 80 189 79 192 PF00635.26 Motile_Sperm Domain 2 106 109 101.1 2.9e-29 1 CL0556
Cotton_A_36586_CDS 92 264 92 264 PF14543.6 TAXi_N Domain 1 178 178 174.5 2.4e-51 1 CL0129
Cotton_A_36586_CDS 286 425 286 426 PF14541.6 TAXi_C Domain 1 160 161 87.3 8.9e-25 1 CL0129
Cotton_A_11865_CDS 76 194 72 195 PF00578.21 AhpC-TSA Domain 6 123 124 142.6 5.6e-42 1 CL0172
Cotton_A_26383_CDS 86 240 60 269 PF04893.17 Yip1 Domain 2 150 172 40.8 1.8e-10 1 CL0112
Cotton_A_26163_CDS 83 432 82 432 PF04137.15 ERO1 Family 2 354 354 418.2 2.7e-125 1 No_clan
Cotton_A_33089_CDS 248 319 248 320 PF04564.15 U-box Domain 1 72 73 70.8 8.2e-20 1 CL0229
Cotton_A_33089_CDS 378 416 377 417 PF00514.23 Arm Repeat 2 40 41 33.7 2.4e-08 1 CL0020
Cotton_A_33089_CDS 460 498 459 499 PF00514.23 Arm Repeat 2 40 41 36.8 2.6e-09 1 CL0020
Cotton_A_17947_CDS 73 143 61 143 PF04433.17 SWIRM Domain 13 89 89 44.5 1.5e-11 1 CL0123
Cotton_A_17947_CDS 169 594 169 594 PF01593.24 Amino_oxidase Domain 1 452 452 309.3 6.1e-92 1 CL0063
Cotton_A_00556_CDS 93 457 92 457 PF00155.21 Aminotran_1_2 Domain 2 363 363 120.9 6.6e-35 1 CL0061
Cotton_A_22452_CDS 6 141 6 144 PF00875.18 DNA_photolyase Domain 1 136 164 123.7 6.9e-36 1 CL0039
Cotton_A_18813_CDS 1 98 1 98 PF03242.13 LEA_3 Family 1 93 93 94.8 3.8e-27 1 No_clan
Cotton_A_24051_CDS 67 539 67 550 PF00221.19 Lyase_aromatic Family 1 454 464 508.2 1.9e-152 1 No_clan
Cotton_A_15488_CDS 46 90 46 98 PF13445.6 zf-RING_UBOX Domain 1 31 39 30.1 3.6e-07 1 CL0229
Cotton_A_10951_CDS 10 57 10 57 PF00319.18 SRF-TF Domain 1 48 48 93.2 4.7e-27 1 No_clan
Cotton_A_10951_CDS 82 167 77 168 PF01486.17 K-box Family 5 92 93 88.3 2.8e-25 1 No_clan
Cotton_A_07212_CDS 14 84 14 85 PF05383.17 La Domain 1 58 59 69.7 1.5e-19 1 CL0123
Cotton_A_07212_CDS 124 184 122 188 PF00076.22 RRM_1 Domain 6 66 70 27.1 2.7e-06 1 CL0221
Cotton_A_07212_CDS 293 377 284 386 PF08777.11 RRM_3 Domain 13 95 102 58.5 5.5e-16 1 CL0221
Cotton_A_09534_CDS 788 834 786 835 PF13920.6 zf-C3HC4_3 Domain 3 49 50 38.2 9.1e-10 1 CL0229
Cotton_A_02360_CDS 132 175 131 175 PF13639.6 zf-RING_2 Domain 2 44 44 54.5 1.1e-14 1 CL0229
Cotton_A_10454_CDS 356 426 32 427 PF10513.9 EPL1 Family 88 156 157 42.1 1.1e-10 1 No_clan
Cotton_A_10454_CDS 611 734 609 734 PF00410.19 Ribosomal_S8 Domain 3 127 127 72.3 3.3e-20 1 No_clan
Cotton_A_29770_CDS 69 142 69 142 PF08783.11 DWNN Domain 1 74 74 72.7 2.2e-20 1 CL0072
Cotton_A_38366_CDS 5 377 4 377 PF00022.19 Actin Family 2 407 407 491.6 1.4e-147 1 CL0108
Cotton_A_05443_CDS 53 546 53 555 PF00118.24 Cpn60_TCP1 Family 1 481 491 283.5 2.7e-84 1 No_clan
Cotton_A_15366_CDS 86 142 85 148 PF13499.6 EF-hand_7 Domain 3 64 71 40.1 3.6e-10 1 CL0220
Cotton_A_15366_CDS 155 219 154 220 PF13499.6 EF-hand_7 Domain 2 70 71 43.9 2.3e-11 1 CL0220
Cotton_A_11737_CDS 276 403 255 457 PF00201.18 UDPGT Family 275 390 499 61.3 7.5e-17 1 CL0113
Cotton_A_17098_CDS 23 102 22 109 PF00481.21 PP2C Family 2 88 258 48.4 9e-13 1 CL0238
Cotton_A_17098_CDS 155 313 134 317 PF00481.21 PP2C Family 96 254 258 205.1 1.5e-60 1 CL0238
Cotton_A_39337_CDS 55 264 54 265 PF00149.28 Metallophos Domain 2 203 204 69.2 6.5e-19 1 CL0163
Cotton_A_03231_CDS 257 400 257 401 PF03033.20 Glyco_transf_28 Family 1 138 139 121.7 2.3e-35 1 CL0113
Cotton_A_03231_CDS 510 653 490 661 PF00201.18 UDPGT Family 278 420 499 23.8 1.7e-05 1 CL0113
Cotton_A_10439_CDS 2 131 1 164 PF00106.25 adh_short Domain 27 138 195 55.0 7e-15 1 CL0063
Cotton_A_08915_CDS 140 225 140 225 PF04433.17 SWIRM Domain 1 89 89 74.0 9.4e-21 1 CL0123
Cotton_A_08915_CDS 305 337 303 343 PF00569.17 ZZ Domain 4 37 45 33.7 2.3e-08 1 CL0006
Cotton_A_08915_CDS 362 404 361 406 PF00249.31 Myb_DNA-binding Domain 2 44 46 45.2 7.9e-12 1 CL0123
Cotton_A_08915_CDS 861 938 860 943 PF16495.5 SWIRM-assoc_1 Family 2 79 84 88.4 2.2e-25 1 No_clan
Cotton_A_37048_CDS 222 371 204 372 PF00931.22 NB-ARC Domain 99 251 252 103.7 8.7e-30 1 CL0023
Cotton_A_16599_CDS 190 328 188 329 PF00892.20 EamA Family 3 136 137 43.0 4.6e-11 1 CL0184
Cotton_A_15856_CDS 206 232 204 232 PF13540.6 RCC1_2 Repeat 4 30 30 23.7 2.9e-05 1 CL0186
Cotton_A_21440_CDS 540 652 539 659 PF04153.18 NOT2_3_5 Family 2 121 131 104.0 6.2e-30 1 No_clan
Cotton_A_14101_CDS 21 79 21 89 PF00076.22 RRM_1 Domain 1 58 70 61.6 4.6e-17 1 CL0221
Cotton_A_02872_CDS 1164 1512 1157 1512 PF00632.25 HECT Domain 7 307 307 265.2 8.4e-79 1 CL0552
Cotton_A_00304_CDS 84 120 82 135 PF00170.21 bZIP_1 Family 5 41 64 32.9 5e-08 1 CL0018
Cotton_A_00423_CDS 13 74 13 75 PF00076.22 RRM_1 Domain 1 69 70 51.1 8.7e-14 1 CL0221
Cotton_A_00423_CDS 100 115 99 116 PF00098.23 zf-CCHC Domain 2 17 18 28.5 1e-06 1 CL0511
Cotton_A_00423_CDS 121 137 121 138 PF00098.23 zf-CCHC Domain 1 17 18 22.7 6.9e-05 1 CL0511
Cotton_A_11804_CDS 77 141 77 141 PF00462.24 Glutaredoxin Domain 1 60 60 64.3 8.5e-18 1 CL0172
Cotton_A_28328_CDS 222 311 222 311 PF17958.1 EF-hand_13 Domain 1 90 90 126.8 2.1e-37 1 CL0220
Cotton_A_28328_CDS 326 426 326 427 PF13499.6 EF-hand_7 Domain 1 70 71 65.1 6e-18 1 CL0220
Cotton_A_03896_CDS 24 125 24 125 PF00447.17 HSF_DNA-bind Domain 1 96 96 98.3 2.9e-28 1 CL0123
Cotton_A_06280_CDS 59 239 59 240 PF00350.23 Dynamin_N Domain 1 167 168 110.9 6.7e-32 1 CL0023
Cotton_A_22338_CDS 209 276 209 276 PF00462.24 Glutaredoxin Domain 1 60 60 68.1 5.5e-19 1 CL0172
Cotton_A_31469_CDS 98 213 84 225 PF01321.18 Creatinase_N Domain 13 119 132 62.0 9e-17 1 CL0356
Cotton_A_31469_CDS 232 418 231 418 PF16189.5 Creatinase_N_2 Domain 2 161 161 158.1 1.9e-46 1 CL0356
Cotton_A_31469_CDS 421 637 420 637 PF00557.24 Peptidase_M24 Domain 2 209 209 153.0 8.6e-45 1 No_clan
Cotton_A_31469_CDS 648 708 648 708 PF16188.5 Peptidase_M24_C Domain 1 63 63 85.3 2.2e-24 1 No_clan
Cotton_A_25881_CDS 48 95 47 96 PF13041.6 PPR_2 Repeat 2 49 50 34.3 2e-08 1 CL0020
Cotton_A_25881_CDS 149 176 147 177 PF12854.7 PPR_1 Repeat 6 33 34 31.7 9.2e-08 1 CL0020
Cotton_A_25881_CDS 179 228 179 229 PF13041.6 PPR_2 Repeat 1 49 50 44.2 1.6e-11 1 CL0020
Cotton_A_25881_CDS 256 281 253 283 PF01535.20 PPR Family 4 29 31 11.2 0.34 1 CL0020
Cotton_A_25881_CDS 286 314 285 315 PF01535.20 PPR Family 2 30 31 24.6 1.9e-05 1 CL0020
Cotton_A_25881_CDS 358 382 356 384 PF01535.20 PPR Family 3 27 31 10.4 0.64 1 CL0020
Cotton_A_26717_CDS 101 452 101 453 PF10250.9 O-FucT Family 1 335 336 205.3 2e-60 1 CL0113
Cotton_A_12469_CDS 93 309 93 309 PF01823.19 MACPF Domain 1 209 209 95.1 6.2e-27 1 CL0293
Cotton_A_09500_CDS 8 152 7 153 PF01751.22 Toprim Family 2 102 103 59.8 2.4e-16 1 CL0413
Cotton_A_09500_CDS 251 578 248 579 PF01131.20 Topoisom_bac Family 14 337 413 253.8 3e-75 1 No_clan
Cotton_A_09500_CDS 855 893 854 895 PF06839.12 zf-GRF Domain 2 43 45 44.6 1.1e-11 1 CL0167
Cotton_A_09500_CDS 1036 1204 1036 1204 PF14543.6 TAXi_N Domain 1 178 178 161.5 2.4e-47 1 CL0129
Cotton_A_04573_CDS 81 136 81 147 PF13806.6 Rieske_2 Domain 1 59 104 34.6 1.4e-08 1 CL0516
Cotton_A_13987_CDS 12 100 10 110 PF00168.30 C2 Domain 3 94 103 55.9 4.1e-15 1 CL0154
Cotton_A_33918_CDS 42 78 39 79 PF08263.12 LRRNT_2 Family 4 40 41 36.3 5.1e-09 1 No_clan
Cotton_A_33918_CDS 132 152 129 173 PF00560.33 LRR_1 Repeat 1 21 23 10.4 0.88 1 CL0022
Cotton_A_23382_CDS 1 157 1 162 PF03662.14 Glyco_hydro_79n Domain 155 311 318 209.8 4.7e-62 1 CL0058
Cotton_A_16857_CDS 46 97 46 97 PF00249.31 Myb_DNA-binding Domain 1 46 46 36.1 5.5e-09 1 CL0123
Cotton_A_16857_CDS 144 191 144 191 PF14379.6 Myb_CC_LHEQLE Family 1 48 48 86.4 7.4e-25 1 No_clan
Cotton_A_39346_CDS 18 79 6 94 PF01150.17 GDA1_CD39 Family 47 108 423 55.9 2.9e-15 1 CL0108
Cotton_A_16681_CDS 65 119 60 120 PF02825.20 WWE Family 10 66 68 28.5 1.8e-06 1 No_clan
Cotton_A_16681_CDS 266 348 235 377 PF00644.20 PARP Family 42 125 195 32.9 4.6e-08 1 CL0084
Cotton_A_16681_CDS 403 465 401 468 PF12174.8 RST Domain 3 64 67 32.2 7.6e-08 1 No_clan
Cotton_A_05847_CDS 37 85 36 87 PF00249.31 Myb_DNA-binding Domain 2 44 46 26.5 5.5e-06 1 CL0123
Cotton_A_05847_CDS 127 166 126 166 PF14379.6 Myb_CC_LHEQLE Family 9 48 48 77.2 5.7e-22 1 No_clan
Cotton_A_18008_CDS 24 101 23 107 PF16561.5 AMPK1_CBM Family 2 76 85 78.5 3.2e-22 1 CL0369
Cotton_A_18008_CDS 353 400 348 404 PF00571.28 CBS Domain 6 53 57 25.1 1.8e-05 1 No_clan
Cotton_A_18008_CDS 439 485 415 486 PF00571.28 CBS Domain 11 56 57 33.7 3.7e-08 1 No_clan
Cotton_A_18008_CDS 508 659 507 671 PF02536.14 mTERF Family 2 159 314 77.3 9.3e-22 1 No_clan
Cotton_A_18008_CDS 677 780 669 781 PF02536.14 mTERF Family 213 313 314 59.8 2.1e-16 1 No_clan
Cotton_A_05957_CDS 6 64 6 64 PF05641.12 Agenet Domain 1 61 61 46.6 3.4e-12 1 CL0049
Cotton_A_05957_CDS 342 387 341 395 PF03735.14 ENT Family 3 48 70 44.8 9.4e-12 1 No_clan
Cotton_A_40008_CDS 289 342 281 343 PF00571.28 CBS Domain 5 56 57 34.1 2.7e-08 1 No_clan
Cotton_A_40008_CDS 373 418 356 420 PF00571.28 CBS Domain 6 53 57 36.8 3.9e-09 1 No_clan
Cotton_A_12641_CDS 77 107 77 108 PF14566.6 PTPlike_phytase Domain 1 32 156 37.6 2.2e-09 1 CL0031
Cotton_A_14979_CDS 228 612 217 625 PF01142.18 TruD Family 40 389 416 215.3 1.3e-63 1 CL0649
Cotton_A_15395_CDS 23 194 22 213 PF01490.18 Aa_trans Family 2 174 409 140.4 6.4e-41 1 CL0062
Cotton_A_33742_CDS 38 151 12 156 PF03062.19 MBOAT Family 125 237 348 39.3 4.7e-10 1 CL0517
Cotton_A_33742_CDS 281 342 278 350 PF03168.13 LEA_2 Domain 4 66 101 32.9 6.9e-08 1 CL0159
Cotton_A_21124_CDS 65 162 65 169 PF12796.7 Ank_2 Repeat 1 76 83 28.4 1.8e-06 1 CL0465
Cotton_A_21124_CDS 255 275 255 276 PF18044.1 zf-CCCH_4 Domain 1 21 22 29.3 5.1e-07 1 CL0537
Cotton_A_00687_CDS 168 285 157 287 PF13537.6 GATase_7 Domain 10 121 123 82.5 2.1e-23 1 CL0052
Cotton_A_00687_CDS 353 458 342 463 PF00156.27 Pribosyltran Domain 22 119 159 36.5 3.1e-09 1 CL0533
Cotton_A_34344_CDS 10 98 10 102 PF02214.22 BTB_2 Domain 1 89 94 63.6 1.6e-17 1 CL0033
Cotton_A_34344_CDS 153 218 149 223 PF13599.6 Pentapeptide_4 Repeat 6 71 77 34.0 2.4e-08 1 CL0505
Cotton_A_34344_CDS 246 284 246 284 PF00805.22 Pentapeptide Repeat 1 39 40 52.2 3.2e-14 1 CL0505
Cotton_A_13533_CDS 7 41 6 45 PF12937.7 F-box-like Domain 3 38 48 26.4 4.8e-06 1 CL0271
Cotton_A_13533_CDS 229 307 227 325 PF08268.12 FBA_3 Domain 3 77 128 31.9 1.1e-07 1 CL0162
Cotton_A_25408_CDS 17 64 17 64 PF00249.31 Myb_DNA-binding Domain 1 46 46 52.4 4.4e-14 1 CL0123
Cotton_A_25408_CDS 71 115 70 115 PF00249.31 Myb_DNA-binding Domain 2 46 46 51.4 9.2e-14 1 CL0123
Cotton_A_21211_CDS 1186 1409 1186 1409 PF02854.19 MIF4G Family 1 212 212 182.1 1e-53 1 CL0020
Cotton_A_21211_CDS 1648 1755 1643 1756 PF02847.17 MA3 Family 7 112 113 50.8 1.4e-13 1 CL0020
Cotton_A_34860_CDS 4 144 3 145 PF01280.20 Ribosomal_L19e Family 2 143 144 174.1 1.6e-51 1 No_clan
Cotton_A_16271_CDS 43 159 43 159 PF16983.5 MFS_MOT1 Family 1 111 111 103.4 8.7e-30 1 CL0062
Cotton_A_16271_CDS 282 347 281 354 PF16983.5 MFS_MOT1 Family 2 60 111 63.0 3.1e-17 1 CL0062
Cotton_A_16687_CDS 62 149 61 151 PF00564.24 PB1 Domain 2 82 84 60.7 9.3e-17 1 CL0072
Cotton_A_10598_CDS 388 686 388 687 PF03399.16 SAC3_GANP Family 1 292 293 295.4 4.5e-88 1 CL0123
Cotton_A_00467_CDS 350 397 348 397 PF00249.31 Myb_DNA-binding Domain 4 46 46 33.8 2.9e-08 1 CL0123
Cotton_A_26778_CDS 26 118 26 119 PF14363.6 AAA_assoc Family 1 95 96 75.4 3.5e-21 1 No_clan
Cotton_A_26778_CDS 241 385 240 386 PF00004.29 AAA Domain 2 131 132 56.9 2.9e-15 1 CL0023
Cotton_A_35750_CDS 104 147 103 147 PF13639.6 zf-RING_2 Domain 2 44 44 53.2 2.7e-14 1 CL0229
Cotton_A_34349_CDS 49 427 45 435 PF13520.6 AA_permease_2 Family 5 379 425 184.0 4.2e-54 1 CL0062
Cotton_A_34349_CDS 565 615 565 615 PF13906.6 AA_permease_C Domain 1 51 51 74.7 4.4e-21 1 CL0062
Cotton_A_02442_CDS 113 277 108 278 PF00544.19 Pec_lyase_C Domain 29 210 211 92.4 2.8e-26 1 CL0268
Cotton_A_20067_CDS 65 357 63 362 PF10250.9 O-FucT Family 4 300 336 145.2 3.7e-42 1 CL0113
Cotton_A_26605_CDS 18 541 16 553 PF04006.12 Mpp10 Family 4 563 616 331.1 1.3e-98 1 No_clan
Cotton_A_24884_CDS 1 61 1 68 PF03936.16 Terpene_synth_C Domain 167 227 267 64.9 6.9e-18 1 CL0613
Cotton_A_22874_CDS 1 99 1 103 PF00291.25 PALP Family 85 184 294 99.6 2.2e-28 1 CL0063
Cotton_A_04772_CDS 88 300 86 318 PF00069.25 Pkinase Domain 3 207 264 156.9 6.2e-46 1 CL0016
Cotton_A_29513_CDS 98 171 98 177 PF03061.22 4HBT Domain 1 74 79 37.5 2.3e-09 1 CL0050
Cotton_A_10993_CDS 185 244 185 245 PF13855.6 LRR_8 Repeat 1 60 61 28.4 1e-06 1 CL0022
Cotton_A_01725_CDS 28 78 28 79 PF05047.16 L51_S25_CI-B8 Domain 1 51 52 52.4 3.6e-14 1 CL0172
Cotton_A_01814_CDS 17 64 17 64 PF00319.18 SRF-TF Domain 1 48 48 90.4 3.5e-26 1 No_clan
Cotton_A_19041_CDS 34 285 31 285 PF00069.25 Pkinase Domain 4 264 264 182.3 1.1e-53 1 CL0016
Cotton_A_39153_CDS 71 149 68 160 PF04191.13 PEMT Family 8 87 106 40.2 3.5e-10 1 CL0115
Cotton_A_22458_CDS 84 133 82 134 PF00847.20 AP2 Domain 3 53 54 49.8 3e-13 1 CL0081
Cotton_A_29004_CDS 9 159 9 171 PF03547.18 Mem_trans Family 1 153 387 168.6 1.4e-49 1 CL0064
Cotton_A_29004_CDS 172 266 165 266 PF03547.18 Mem_trans Family 293 387 387 123.2 8.4e-36 1 CL0064
Cotton_A_23955_CDS 25 100 22 101 PF14542.6 Acetyltransf_CG Domain 2 79 80 73.6 1.1e-20 1 CL0257
Cotton_A_10665_CDS 134 281 133 281 PF00005.27 ABC_tran Domain 2 137 137 105.3 3.6e-30 1 CL0023
Cotton_A_33241_CDS 34 165 1 166 PF12819.7 Malectin_like Domain 217 335 336 77.0 1.5e-21 1 CL0202
Cotton_A_34688_CDS 39 97 10 99 PF00067.22 p450 Domain 402 461 463 31.4 8.2e-08 1 No_clan
Cotton_A_05268_CDS 205 337 205 338 PF00004.29 AAA Domain 1 131 132 134.8 2.4e-39 1 CL0023
Cotton_A_05268_CDS 360 403 360 404 PF17862.1 AAA_lid_3 Domain 1 44 45 40.4 1.8e-10 1 CL0671
Cotton_A_06547_CDS 2 306 1 317 PF00067.22 p450 Domain 149 451 463 240.6 2.9e-71 1 No_clan
Cotton_A_09122_CDS 297 347 297 347 PF10058.9 zinc_ribbon_10 Family 1 54 54 68.0 4.2e-19 1 CL0167
Cotton_A_25179_CDS 33 191 32 205 PF01397.21 Terpene_synth Domain 2 176 192 176.7 4.1e-52 1 No_clan
Cotton_A_25179_CDS 237 427 237 431 PF03936.16 Terpene_synth_C Domain 1 193 267 265.8 3.8e-79 1 CL0613
Cotton_A_25179_CDS 430 468 428 468 PF03936.16 Terpene_synth_C Domain 229 267 267 38.9 6.3e-10 1 CL0613
Cotton_A_33390_CDS 20 82 20 86 PF08583.10 Cmc1 Family 1 64 69 61.3 6.5e-17 1 CL0351
Cotton_A_24307_CDS 12 98 12 98 PF01749.20 IBB Family 1 90 90 84.9 4e-24 1 CL0020
Cotton_A_24307_CDS 109 149 108 149 PF00514.23 Arm Repeat 2 41 41 37.8 1.3e-09 1 CL0020
Cotton_A_24307_CDS 152 190 151 191 PF00514.23 Arm Repeat 2 40 41 46.5 2.3e-12 1 CL0020
Cotton_A_24307_CDS 193 234 193 234 PF00514.23 Arm Repeat 1 41 41 23.1 5.2e-05 1 CL0020
Cotton_A_24307_CDS 247 275 242 275 PF00514.23 Arm Repeat 13 41 41 22.0 0.00012 1 CL0020
Cotton_A_24307_CDS 278 316 277 317 PF00514.23 Arm Repeat 2 40 41 36.1 4.3e-09 1 CL0020
Cotton_A_24307_CDS 319 360 319 360 PF00514.23 Arm Repeat 1 41 41 37.7 1.3e-09 1 CL0020
Cotton_A_24307_CDS 363 401 362 402 PF00514.23 Arm Repeat 2 40 41 35.3 7.8e-09 1 CL0020
Cotton_A_24307_CDS 406 443 405 445 PF00514.23 Arm Repeat 2 39 41 30.3 3e-07 1 CL0020
Cotton_A_24307_CDS 460 507 460 511 PF16186.5 Arm_3 Family 1 49 53 77.1 5.4e-22 1 CL0020
Cotton_A_09266_CDS 90 123 53 127 PF01501.20 Glyco_transf_8 Family 90 124 256 25.4 9.4e-06 1 CL0110
Cotton_A_05226_CDS 114 215 113 217 PF03168.13 LEA_2 Domain 2 99 101 26.6 6.4e-06 1 CL0159
Cotton_A_01905_CDS 5 48 4 48 PF12515.8 CaATP_NAI Family 2 45 45 65.8 1.9e-18 1 No_clan
Cotton_A_01905_CDS 115 181 113 181 PF00690.26 Cation_ATPase_N Domain 3 69 69 52.5 2.9e-14 1 No_clan
Cotton_A_01905_CDS 232 428 229 429 PF00122.20 E1-E2_ATPase Family 4 180 181 142.5 9.6e-42 1 No_clan
Cotton_A_01905_CDS 501 588 500 589 PF13246.6 Cation_ATPase Family 2 90 91 71.7 4.1e-20 1 CL0137
Cotton_A_01905_CDS 835 1008 834 1009 PF00689.21 Cation_ATPase_C Family 2 181 182 146.9 5e-43 1 No_clan
Cotton_A_08947_CDS 365 407 365 408 PF06203.14 CCT Motif 1 43 44 56.9 1.6e-15 1 CL0281
Cotton_A_40441_CDS 7 291 6 292 PF04733.14 Coatomer_E Family 2 289 290 453.1 4.1e-136 1 CL0020
Cotton_A_31854_CDS 73 149 73 149 PF16450.5 Prot_ATP_ID_OB Domain 1 57 57 64.6 5.7e-18 1 CL0021
Cotton_A_31854_CDS 222 354 222 355 PF00004.29 AAA Domain 1 131 132 145.0 1.7e-42 1 CL0023
Cotton_A_31854_CDS 377 421 377 421 PF17862.1 AAA_lid_3 Domain 1 45 45 51.7 5.5e-14 1 CL0671
Cotton_A_32559_CDS 71 126 71 127 PF01849.18 NAC Family 1 56 57 86.7 7.5e-25 1 No_clan
Cotton_A_13766_CDS 92 144 91 145 PF04770.12 ZF-HD_dimer Family 2 54 55 104.0 3.7e-30 1 No_clan
Cotton_A_20302_CDS 270 399 237 432 PF00201.18 UDPGT Family 274 390 499 79.7 2e-22 1 CL0113
Cotton_A_32212_CDS 7 99 1 104 PF00230.20 MIP Family 120 206 227 69.0 4.7e-19 1 No_clan
Cotton_A_18697_CDS 105 125 103 128 PF01535.20 PPR Family 4 24 31 16.7 0.0061 1 CL0020
Cotton_A_18697_CDS 203 228 203 230 PF01535.20 PPR Family 4 29 31 21.4 0.0002 1 CL0020
Cotton_A_18697_CDS 303 332 302 332 PF01535.20 PPR Family 2 31 31 16.8 0.0056 1 CL0020
Cotton_A_18697_CDS 400 427 399 428 PF01535.20 PPR Family 3 30 31 14.7 0.028 1 CL0020
Cotton_A_18697_CDS 429 451 429 454 PF01535.20 PPR Family 1 23 31 25.1 1.3e-05 1 CL0020
Cotton_A_18697_CDS 503 527 500 529 PF01535.20 PPR Family 4 28 31 17.3 0.004 1 CL0020
Cotton_A_18697_CDS 529 575 528 577 PF13041.6 PPR_2 Repeat 2 48 50 39.4 5.2e-10 1 CL0020
Cotton_A_18697_CDS 603 624 602 626 PF01535.20 PPR Family 2 23 31 16.0 0.011 1 CL0020
Cotton_A_18697_CDS 670 698 669 698 PF01535.20 PPR Family 3 31 31 12.7 0.12 1 CL0020
Cotton_A_06403_CDS 26 54 24 54 PF01535.20 PPR Family 3 31 31 28.5 1.1e-06 1 CL0020
Cotton_A_06403_CDS 55 78 55 83 PF01535.20 PPR Family 1 24 31 11.1 0.38 1 CL0020
Cotton_A_06403_CDS 86 101 86 115 PF01535.20 PPR Family 1 16 31 10.3 0.68 1 CL0020
Cotton_A_06403_CDS 162 183 160 184 PF01535.20 PPR Family 3 24 31 16.3 0.0085 1 CL0020
Cotton_A_06403_CDS 193 214 192 216 PF01535.20 PPR Family 2 23 31 16.4 0.0079 1 CL0020
Cotton_A_06403_CDS 222 269 221 270 PF13041.6 PPR_2 Repeat 2 49 50 47.1 1.9e-12 1 CL0020
Cotton_A_06403_CDS 326 354 325 355 PF01535.20 PPR Family 2 30 31 18.2 0.002 1 CL0020
Cotton_A_06403_CDS 356 380 356 384 PF01535.20 PPR Family 1 25 31 12.3 0.16 1 CL0020
Cotton_A_06403_CDS 429 454 428 457 PF01535.20 PPR Family 3 28 31 15.3 0.017 1 CL0020
Cotton_A_06403_CDS 455 502 455 504 PF13041.6 PPR_2 Repeat 1 48 50 46.8 2.4e-12 1 CL0020
Cotton_A_20966_CDS 192 250 190 251 PF04117.12 Mpv17_PMP22 Family 3 61 62 60.4 1.5e-16 1 No_clan
Cotton_A_29344_CDS 27 119 5 119 PF00583.25 Acetyltransf_1 Family 41 117 117 32.2 9.8e-08 1 CL0257
Cotton_A_02080_CDS 2 36 1 43 PF12937.7 F-box-like Domain 2 35 48 27.0 3.1e-06 1 CL0271
Cotton_A_07906_CDS 57 196 52 197 PF10604.9 Polyketide_cyc2 Family 8 142 143 44.8 1.5e-11 1 CL0209
Cotton_A_38346_CDS 57 122 57 123 PF02148.19 zf-UBP Domain 1 63 64 38.8 9e-10 1 CL0229
Cotton_A_38346_CDS 206 571 206 571 PF00443.29 UCH Family 1 257 257 182.5 1e-53 1 CL0125
Cotton_A_27603_CDS 36 191 36 192 PF02453.17 Reticulon Family 1 156 157 153.0 6.1e-45 1 CL0484
Cotton_A_13892_CDS 13 41 6 41 PF00400.32 WD40 Repeat 12 38 38 15.9 0.017 1 CL0186
Cotton_A_13892_CDS 57 92 56 94 PF00400.32 WD40 Repeat 2 36 38 24.7 3e-05 1 CL0186
Cotton_A_13892_CDS 119 153 115 153 PF00400.32 WD40 Repeat 5 38 38 31.8 1.7e-07 1 CL0186
Cotton_A_13892_CDS 159 194 157 195 PF00400.32 WD40 Repeat 3 37 38 26.2 1e-05 1 CL0186
Cotton_A_13892_CDS 335 362 331 363 PF00400.32 WD40 Repeat 6 34 38 12.9 0.16 1 CL0186
Cotton_A_13892_CDS 691 888 691 889 PF07569.11 Hira Family 1 221 222 163.4 6.3e-48 1 No_clan
Cotton_A_19165_CDS 1 42 1 103 PF07714.17 Pkinase_Tyr Domain 172 213 259 24.1 1.9e-05 1 CL0016
Cotton_A_17683_CDS 64 124 63 124 PF00403.26 HMA Domain 2 62 62 47.2 2.2e-12 1 No_clan
Cotton_A_17683_CDS 146 206 145 206 PF00403.26 HMA Domain 2 62 62 49.5 4.4e-13 1 No_clan
Cotton_A_17683_CDS 447 642 444 644 PF00122.20 E1-E2_ATPase Family 4 179 181 155.8 8.5e-46 1 No_clan
Cotton_A_17683_CDS 662 899 660 899 PF00702.26 Hydrolase Domain 3 210 210 149.2 1.9e-43 1 CL0137
Cotton_A_03274_CDS 6 103 5 108 PF03650.13 MPC Family 2 98 110 120.4 3.7e-35 1 CL0141
Cotton_A_33056_CDS 29 66 24 68 PF02309.16 AUX_IAA Family 190 227 237 47.7 1.8e-12 1 CL0072
Cotton_A_25509_CDS 12 67 12 74 PF04511.15 DER1 Family 1 56 191 62.6 4.4e-17 1 CL0207
Cotton_A_25509_CDS 77 164 66 165 PF04511.15 DER1 Family 101 190 191 93.8 1.2e-26 1 CL0207
Cotton_A_25474_CDS 104 192 56 195 PF00933.21 Glyco_hydro_3 Domain 81 162 319 31.6 1.1e-07 1 CL0058
Cotton_A_25474_CDS 691 755 689 757 PF14310.6 Fn3-like Family 5 69 71 42.1 6.9e-11 1 CL0159
Cotton_A_15335_CDS 36 62 25 62 PF00400.32 WD40 Repeat 11 38 38 12.7 0.19 1 CL0186
Cotton_A_15335_CDS 69 106 68 106 PF00400.32 WD40 Repeat 2 38 38 33.9 3.7e-08 1 CL0186
Cotton_A_15335_CDS 112 147 111 147 PF00400.32 WD40 Repeat 3 38 38 17.4 0.0062 1 CL0186
Cotton_A_15335_CDS 202 243 201 243 PF00400.32 WD40 Repeat 2 38 38 23.7 6.3e-05 1 CL0186
Cotton_A_15335_CDS 250 285 247 285 PF00400.32 WD40 Repeat 4 38 38 26.0 1.2e-05 1 CL0186
Cotton_A_25249_CDS 9 331 8 331 PF00225.23 Kinesin Domain 2 333 333 360.8 5.5e-108 1 CL0023
Cotton_A_00652_CDS 82 174 63 193 PF00388.19 PI-PLC-X Family 24 122 145 31.1 1.5e-07 1 CL0384
Cotton_A_05163_CDS 39 156 38 161 PF00638.18 Ran_BP1 Family 2 119 122 136.5 5.3e-40 1 CL0266
Cotton_A_35278_CDS 43 527 37 527 PF05793.12 TFIIF_alpha Family 4 528 528 452.2 2.2e-135 1 CL0123
Cotton_A_22015_CDS 28 163 17 190 PF00069.25 Pkinase Domain 14 146 264 42.8 3.8e-11 1 CL0016
Cotton_A_08717_CDS 36 400 36 400 PF12819.7 Malectin_like Domain 1 336 336 145.4 2.3e-42 1 CL0202
Cotton_A_08717_CDS 521 785 518 788 PF07714.17 Pkinase_Tyr Domain 4 256 259 170.0 5.6e-50 1 CL0016
Cotton_A_26510_CDS 4 260 4 260 PF00069.25 Pkinase Domain 1 264 264 240.9 1.5e-71 1 CL0016
Cotton_A_31374_CDS 7 137 6 137 PF04535.12 DUF588 Domain 2 150 150 84.1 7.9e-24 1 CL0396
Cotton_A_11484_CDS 125 236 123 255 PF07690.16 MFS_1 Family 3 114 353 64.6 7.3e-18 1 CL0015
Cotton_A_11484_CDS 271 542 268 543 PF07690.16 MFS_1 Family 114 352 353 110.2 1e-31 1 CL0015
Cotton_A_24841_CDS 33 156 33 159 PF00179.26 UQ_con Domain 1 137 140 100.6 5.7e-29 1 CL0208
Cotton_A_10302_CDS 21 305 21 305 PF03096.14 Ndr Domain 1 283 283 370.7 3e-111 1 CL0028
Cotton_A_11775_CDS 2 38 1 42 PF01429.19 MBD Domain 35 73 77 23.9 2.4e-05 1 CL0081
Cotton_A_26177_CDS 28 229 22 240 PF09807.9 ELP6 Family 20 235 252 102.6 2.3e-29 1 CL0023
Cotton_A_23372_CDS 27 343 27 344 PF00332.18 Glyco_hydro_17 Domain 1 310 313 250.7 2.5e-74 1 CL0058
Cotton_A_36562_CDS 130 593 129 594 PF03055.15 RPE65 Family 2 462 463 373.6 1.9e-111 1 No_clan
Cotton_A_14271_CDS 152 278 150 306 PF13369.6 Transglut_core2 Family 3 129 155 59.2 3.3e-16 1 CL0125
Cotton_A_17742_CDS 237 277 234 279 PF04539.16 Sigma70_r3 Family 6 46 78 28.7 1.1e-06 1 CL0123
Cotton_A_17742_CDS 282 348 282 353 PF04542.14 Sigma70_r2 Domain 1 64 71 37.7 1.3e-09 1 CL0123
Cotton_A_17742_CDS 366 432 363 437 PF04539.16 Sigma70_r3 Family 4 71 78 47.9 1.1e-12 1 CL0123
Cotton_A_17742_CDS 451 504 451 504 PF04545.16 Sigma70_r4 Domain 1 50 50 48.2 5.4e-13 1 CL0123
Cotton_A_35394_CDS 182 418 182 418 PF03360.16 Glyco_transf_43 Family 1 205 205 189.6 5.6e-56 1 CL0110
Cotton_A_08174_CDS 163 221 163 221 PF13867.6 SAP30_Sin3_bdg Family 1 54 54 46.5 3.4e-12 1 No_clan
Cotton_A_29121_CDS 45 96 45 96 PF02229.16 PC4 Domain 1 52 52 85.4 1.5e-24 1 CL0609
Cotton_A_03181_CDS 8 553 8 553 PF00862.19 Sucrose_synth Family 1 548 548 934.0 2.2e-281 1 CL0113
Cotton_A_03181_CDS 559 737 556 742 PF00534.20 Glycos_transf_1 Family 4 166 172 111.0 4.3e-32 1 CL0113
Cotton_A_04730_CDS 88 409 88 416 PF00459.25 Inositol_P Family 1 265 272 117.7 6.5e-34 1 CL0171
Cotton_A_02296_CDS 98 195 97 202 PF03168.13 LEA_2 Domain 2 96 101 51.7 9.8e-14 1 CL0159
Cotton_A_24864_CDS 73 177 73 177 PF01453.24 B_lectin Domain 1 105 105 141.3 1.4e-41 1 No_clan
Cotton_A_24864_CDS 209 315 209 316 PF00954.20 S_locus_glycop Domain 1 110 111 83.3 1.6e-23 1 No_clan
Cotton_A_24864_CDS 330 396 330 396 PF08276.11 PAN_2 Domain 1 67 67 64.9 5.4e-18 1 CL0168
Cotton_A_24864_CDS 491 757 490 761 PF07714.17 Pkinase_Tyr Domain 2 255 259 164.2 3.4e-48 1 CL0016
Cotton_A_24864_CDS 763 808 763 808 PF11883.8 DUF3403 Family 1 46 46 42.5 5.1e-11 1 No_clan
Cotton_A_21572_CDS 37 68 36 69 PF00400.32 WD40 Repeat 2 32 38 25.1 2.1e-05 1 CL0186
Cotton_A_21572_CDS 161 245 159 249 PF04003.12 Utp12 Family 3 84 107 45.8 6.2e-12 1 No_clan
Cotton_A_26234_CDS 44 380 44 380 PF00206.20 Lyase_1 Domain 1 312 312 331.2 6.6e-99 1 No_clan
Cotton_A_26234_CDS 446 499 446 499 PF10415.9 FumaraseC_C Domain 1 54 54 84.5 5e-24 1 No_clan
Cotton_A_03715_CDS 100 188 97 193 PF00686.19 CBM_20 Family 4 92 97 48.7 5.4e-13 1 CL0369
Cotton_A_03715_CDS 587 866 586 866 PF10150.9 RNase_E_G Family 2 270 270 289.6 2.3e-86 1 No_clan
Cotton_A_13679_CDS 64 190 64 228 PF04427.18 Brix Domain 1 161 193 58.8 7.5e-16 1 CL0458
Cotton_A_14891_CDS 6 445 4 445 PF02458.15 Transferase Family 3 434 434 290.3 2e-86 1 CL0149
Cotton_A_04381_CDS 2 31 1 32 PF00076.22 RRM_1 Domain 40 69 70 25.6 8e-06 1 CL0221
Cotton_A_12744_CDS 35 176 35 177 PF08718.11 GLTP Domain 1 148 149 141.4 2.6e-41 1 No_clan
Cotton_A_16239_CDS 121 159 121 159 PF00400.32 WD40 Repeat 1 38 38 17.4 0.0059 1 CL0186
Cotton_A_16239_CDS 181 212 174 213 PF00400.32 WD40 Repeat 9 37 38 12.1 0.28 1 CL0186
Cotton_A_05437_CDS 53 591 53 592 PF02990.16 EMP70 Family 1 518 519 755.0 4e-227 1 No_clan
Cotton_A_39569_CDS 69 247 69 248 PF02245.16 Pur_DNA_glyco Domain 1 174 175 177.1 2e-52 1 No_clan
Cotton_A_30444_CDS 86 259 86 259 PF14543.6 TAXi_N Domain 1 178 178 196.4 4.4e-58 1 CL0129
Cotton_A_39138_CDS 26 73 26 73 PF00249.31 Myb_DNA-binding Domain 1 46 46 56.1 3.1e-15 1 CL0123
Cotton_A_39138_CDS 79 122 79 123 PF00249.31 Myb_DNA-binding Domain 1 44 46 52.3 4.8e-14 1 CL0123
Cotton_A_09735_CDS 75 222 75 236 PF13460.6 NAD_binding_10 Domain 1 146 184 34.6 1.7e-08 1 CL0063
Cotton_A_04502_CDS 77 107 73 123 PF00170.21 bZIP_1 Family 5 35 64 31.6 1.3e-07 1 CL0018
Cotton_A_04502_CDS 167 242 167 243 PF14144.6 DOG1 Family 1 76 77 97.2 4.7e-28 1 No_clan
Cotton_A_09129_CDS 169 247 168 247 PF08545.10 ACP_syn_III Domain 2 80 80 99.3 8.3e-29 1 CL0046
Cotton_A_09129_CDS 301 390 301 390 PF08541.10 ACP_syn_III_C Domain 1 90 90 128.5 8.1e-38 1 CL0046
Cotton_A_27315_CDS 15 127 2 127 PF04885.13 Stig1 Family 26 139 139 135.2 2e-39 1 No_clan
Cotton_A_39860_CDS 109 129 109 129 PF00612.27 IQ Motif 1 21 21 27.0 2.2e-06 1 CL0220
Cotton_A_39860_CDS 135 150 132 151 PF00612.27 IQ Motif 5 20 21 12.5 0.099 1 CL0220
Cotton_A_39860_CDS 314 407 308 413 PF13178.6 DUF4005 Family 7 82 93 34.9 1.8e-08 1 No_clan
Cotton_A_35865_CDS 71 195 67 196 PF01529.20 DHHC Family 6 133 134 129.0 1.2e-37 1 No_clan
Cotton_A_24656_CDS 12 61 11 62 PF03939.13 Ribosomal_L23eN Family 2 50 51 64.8 5.9e-18 1 No_clan
Cotton_A_24656_CDS 71 132 70 143 PF00276.20 Ribosomal_L23 Family 2 75 86 51.9 7.5e-14 1 No_clan
Cotton_A_01267_CDS 9 49 9 50 PF00832.20 Ribosomal_L39 Family 1 41 42 80.1 6.6e-23 1 No_clan
Cotton_A_07038_CDS 130 242 128 242 PF12146.8 Hydrolase_4 Family 123 239 239 65.1 5.6e-18 1 CL0028
Cotton_A_29489_CDS 29 500 28 503 PF00232.18 Glyco_hydro_1 Domain 2 447 453 550.7 1.9e-165 1 CL0058
Cotton_A_40721_CDS 31 69 30 70 PF12937.7 F-box-like Domain 2 41 48 36.2 4.1e-09 1 CL0271
Cotton_A_40721_CDS 242 326 239 365 PF08268.12 FBA_3 Domain 4 88 128 27.6 2.3e-06 1 CL0162
Cotton_A_27309_CDS 19 68 18 69 PF00847.20 AP2 Domain 2 53 54 47.7 1.4e-12 1 CL0081
Cotton_A_31508_CDS 226 254 224 257 PF07498.12 Rho_N Family 3 31 43 29.3 5.8e-07 1 CL0306
Cotton_A_11963_CDS 6 138 4 149 PF00483.23 NTP_transferase Family 3 137 248 54.5 1.2e-14 1 CL0110
Cotton_A_11963_CDS 381 414 380 417 PF00132.24 Hexapep Repeat 2 30 36 22.8 5.4e-05 1 CL0536
Cotton_A_04161_CDS 24 89 18 90 PF00076.22 RRM_1 Domain 7 69 70 24.3 2.1e-05 1 CL0221
Cotton_A_18217_CDS 1 81 1 83 PF02485.21 Branch Family 163 245 247 52.9 3.6e-14 1 CL0110
Cotton_A_34515_CDS 2 161 1 186 PF08449.11 UAA Family 59 220 302 153.2 9e-45 1 CL0184
Cotton_A_34515_CDS 162 205 162 215 PF16712.5 SCAB_CC Family 1 44 168 58.6 6.4e-16 1 No_clan
Cotton_A_17279_CDS 6 87 5 116 PF18052.1 Rx_N Domain 2 84 93 69.1 2.9e-19 1 No_clan
Cotton_A_17279_CDS 131 356 129 365 PF00931.22 NB-ARC Domain 3 226 252 195.7 7.5e-58 1 CL0023
Cotton_A_09069_CDS 45 89 41 89 PF13855.6 LRR_8 Repeat 16 61 61 29.4 5.1e-07 1 CL0022
Cotton_A_09069_CDS 451 724 447 726 PF07714.17 Pkinase_Tyr Domain 5 257 259 112.8 1.6e-32 1 CL0016
Cotton_A_20771_CDS 90 196 86 197 PF00651.31 BTB Domain 9 110 111 76.5 1.8e-21 1 CL0033
Cotton_A_17735_CDS 110 136 110 139 PF01535.20 PPR Family 1 27 31 25.5 9.6e-06 1 CL0020
Cotton_A_17735_CDS 140 187 139 188 PF13041.6 PPR_2 Repeat 2 49 50 32.3 8.1e-08 1 CL0020
Cotton_A_17735_CDS 245 272 245 275 PF01535.20 PPR Family 1 28 31 13.5 0.066 1 CL0020
Cotton_A_17735_CDS 349 396 348 398 PF13041.6 PPR_2 Repeat 2 48 50 34.3 2e-08 1 CL0020
Cotton_A_17735_CDS 450 496 450 499 PF13041.6 PPR_2 Repeat 1 47 50 41.0 1.6e-10 1 CL0020
Cotton_A_17735_CDS 552 599 551 600 PF13041.6 PPR_2 Repeat 2 49 50 42.2 6.8e-11 1 CL0020
Cotton_A_17735_CDS 627 650 625 652 PF01535.20 PPR Family 3 26 31 12.6 0.13 1 CL0020
Cotton_A_17735_CDS 726 849 725 849 PF14432.6 DYW_deaminase Family 2 127 127 143.6 2.8e-42 1 CL0109
Cotton_A_07399_CDS 23 346 23 347 PF00332.18 Glyco_hydro_17 Domain 1 312 313 336.3 2.2e-100 1 CL0058
Cotton_A_07399_CDS 372 443 372 444 PF07983.13 X8 Domain 1 75 76 52.0 8.7e-14 1 No_clan
Cotton_A_22275_CDS 167 400 164 404 PF00931.22 NB-ARC Domain 4 248 252 169.1 9.9e-50 1 CL0023
Cotton_A_22275_CDS 600 657 599 658 PF13855.6 LRR_8 Repeat 2 59 61 28.5 9.3e-07 1 CL0022
Cotton_A_13827_CDS 59 418 58 418 PF00328.22 His_Phos_2 Family 4 383 383 154.8 3.9e-45 1 CL0071
Cotton_A_00238_CDS 44 186 43 187 PF03018.14 Dirigent Family 2 147 148 168.0 1.1e-49 1 CL0650
Cotton_A_29204_CDS 236 306 236 308 PF04564.15 U-box Domain 1 71 73 74.6 5e-21 1 CL0229
Cotton_A_29204_CDS 530 567 528 568 PF00514.23 Arm Repeat 3 40 41 29.6 4.8e-07 1 CL0020
Cotton_A_29204_CDS 570 609 569 609 PF00514.23 Arm Repeat 2 41 41 27.6 2e-06 1 CL0020
Cotton_A_29204_CDS 614 649 611 650 PF00514.23 Arm Repeat 5 40 41 26.5 4.6e-06 1 CL0020
Cotton_A_29204_CDS 653 689 651 690 PF00514.23 Arm Repeat 3 40 41 20.5 0.00034 1 CL0020
Cotton_A_29204_CDS 693 730 692 731 PF00514.23 Arm Repeat 3 40 41 24.6 1.8e-05 1 CL0020
Cotton_A_24576_CDS 185 251 185 251 PF00462.24 Glutaredoxin Domain 1 60 60 40.0 3.3e-10 1 CL0172
Cotton_A_31937_CDS 214 241 201 241 PF00400.32 WD40 Repeat 11 38 38 15.1 0.032 1 CL0186
Cotton_A_31937_CDS 253 284 245 284 PF00400.32 WD40 Repeat 9 38 38 16.8 0.0094 1 CL0186
Cotton_A_31937_CDS 296 330 292 330 PF00400.32 WD40 Repeat 5 38 38 18.4 0.003 1 CL0186
Cotton_A_31937_CDS 370 412 368 412 PF00400.32 WD40 Repeat 3 38 38 13.3 0.12 1 CL0186
Cotton_A_31937_CDS 418 453 416 454 PF00400.32 WD40 Repeat 3 37 38 23.1 9.5e-05 1 CL0186
Cotton_A_04019_CDS 78 254 78 257 PF00406.22 ADK Domain 1 148 151 169.6 4.6e-50 1 CL0023
Cotton_A_26507_CDS 9 53 8 56 PF00646.33 F-box Domain 2 45 48 21.5 0.00016 1 CL0271
Cotton_A_15175_CDS 189 223 189 225 PF05627.11 AvrRpt-cleavage Domain 1 35 37 75.3 1.7e-21 1 No_clan
Cotton_A_10733_CDS 68 140 64 178 PF13474.6 SnoaL_3 Domain 5 75 121 38.1 1.5e-09 1 CL0051
Cotton_A_02056_CDS 45 498 39 508 PF00067.22 p450 Domain 6 452 463 288.2 1.1e-85 1 No_clan
Cotton_A_02980_CDS 50 474 48 474 PF00909.21 Ammonium_transp Family 3 399 399 450.3 4.7e-135 1 No_clan
Cotton_A_36383_CDS 347 407 346 409 PF13432.6 TPR_16 Family 3 66 68 40.3 3.6e-10 1 CL0020
Cotton_A_36383_CDS 413 471 413 475 PF13432.6 TPR_16 Family 1 62 68 36.9 4.3e-09 1 CL0020
Cotton_A_07489_CDS 28 122 28 122 PF14363.6 AAA_assoc Family 1 96 96 69.5 2.3e-19 1 No_clan
Cotton_A_07489_CDS 232 355 229 356 PF00004.29 AAA Domain 9 131 132 40.4 3.5e-10 1 CL0023
Cotton_A_02253_CDS 47 248 46 248 PF00161.19 RIP Domain 2 196 196 133.0 9.6e-39 1 No_clan
Cotton_A_02253_CDS 327 445 323 446 PF00652.22 Ricin_B_lectin Domain 5 126 127 74.2 1.1e-20 1 CL0066
Cotton_A_02253_CDS 457 572 455 572 PF00652.22 Ricin_B_lectin Domain 3 127 127 61.8 7.3e-17 1 CL0066
Cotton_A_26490_CDS 153 212 153 212 PF13855.6 LRR_8 Repeat 1 61 61 30.4 2.3e-07 1 CL0022
Cotton_A_26490_CDS 404 425 404 426 PF00560.33 LRR_1 Repeat 1 22 23 13.5 0.081 1 CL0022
Cotton_A_31461_CDS 6 120 3 121 PF00153.27 Mito_carr Family 4 96 97 49.9 2.2e-13 1 No_clan
Cotton_A_31461_CDS 126 210 124 211 PF00153.27 Mito_carr Family 3 96 97 40.2 2.4e-10 1 No_clan
Cotton_A_31461_CDS 225 319 223 323 PF00153.27 Mito_carr Family 4 90 97 55.0 5.9e-15 1 No_clan
Cotton_A_00964_CDS 156 471 156 472 PF10250.9 O-FucT Family 1 335 336 237.7 2.8e-70 1 CL0113
Cotton_A_05694_CDS 50 108 50 108 PF12678.7 zf-rbx1 Domain 1 55 55 88.5 2.6e-25 1 CL0229
Cotton_A_21799_CDS 45 97 44 97 PF05605.12 zf-Di19 Domain 2 54 54 75.3 3.4e-21 1 CL0361
Cotton_A_21799_CDS 119 220 118 220 PF14571.6 Di19_C Family 2 102 102 120.4 3.9e-35 1 No_clan
Cotton_A_16135_CDS 10 79 10 81 PF13334.6 DUF4094 Family 1 83 88 60.6 1.4e-16 1 No_clan
Cotton_A_16135_CDS 123 319 123 321 PF01762.21 Galactosyl_T Family 1 193 195 166.5 6e-49 1 CL0110
Cotton_A_36969_CDS 22 339 21 340 PF02733.17 Dak1 Family 2 310 311 375.4 1.6e-112 1 CL0245
Cotton_A_36969_CDS 407 583 407 585 PF02734.17 Dak2 Family 1 172 174 144.5 3e-42 1 No_clan
Cotton_A_20613_CDS 8 37 3 38 PF00400.32 WD40 Repeat 8 36 38 13.8 0.08 1 CL0186
Cotton_A_20613_CDS 46 85 45 85 PF00400.32 WD40 Repeat 2 38 38 19.9 0.00096 1 CL0186
Cotton_A_20613_CDS 96 131 92 132 PF00400.32 WD40 Repeat 5 37 38 13.9 0.078 1 CL0186
Cotton_A_20613_CDS 144 190 139 191 PF00400.32 WD40 Repeat 6 37 38 18.0 0.0039 1 CL0186
Cotton_A_20613_CDS 208 240 202 241 PF00400.32 WD40 Repeat 10 37 38 13.7 0.092 1 CL0186
Cotton_A_14738_CDS 263 296 259 297 PF00400.32 WD40 Repeat 5 37 38 19.8 0.0011 1 CL0186
Cotton_A_14738_CDS 306 341 303 341 PF00400.32 WD40 Repeat 4 38 38 18.4 0.0029 1 CL0186
Cotton_A_14738_CDS 345 382 345 383 PF00400.32 WD40 Repeat 1 37 38 20.2 0.00076 1 CL0186
Cotton_A_14738_CDS 472 510 470 511 PF00400.32 WD40 Repeat 3 37 38 14.1 0.068 1 CL0186
Cotton_A_14738_CDS 516 553 515 553 PF00400.32 WD40 Repeat 2 37 38 33.7 4.3e-08 1 CL0186
Cotton_A_13995_CDS 83 132 83 136 PF07939.11 DUF1685 Family 1 51 60 84.0 4.3e-24 1 No_clan
Cotton_A_06503_CDS 9 59 8 59 PF03765.15 CRAL_TRIO_N Domain 2 54 54 36.6 3.7e-09 1 CL0214
Cotton_A_06503_CDS 87 231 84 240 PF00650.20 CRAL_TRIO Domain 4 145 159 69.2 3.3e-19 1 CL0512
Cotton_A_33124_CDS 2 320 1 341 PF00067.22 p450 Domain 115 439 463 164.8 2.9e-48 1 No_clan
Cotton_A_00022_CDS 22 60 22 62 PF13414.6 TPR_11 Repeat 1 39 42 37.3 1.6e-09 1 CL0020
Cotton_A_00022_CDS 84 115 83 116 PF07719.17 TPR_2 Repeat 2 33 34 25.3 9.5e-06 1 CL0020
Cotton_A_22245_CDS 172 280 144 281 PF02130.17 UPF0054 Family 25 127 128 111.7 1.9e-32 1 CL0126
Cotton_A_22245_CDS 330 607 330 607 PF08282.12 Hydrolase_3 Domain 1 255 255 159.5 1.2e-46 1 CL0137
Cotton_A_00397_CDS 36 425 32 430 PF00999.21 Na_H_Exchanger Family 3 377 381 212.2 9.7e-63 1 CL0064
Cotton_A_27171_CDS 92 258 92 259 PF00504.21 Chloroa_b-bind Family 1 160 161 182.2 9.8e-54 1 No_clan
Cotton_A_03133_CDS 97 493 96 493 PF00999.21 Na_H_Exchanger Family 2 381 381 234.7 1.4e-69 1 CL0064
Cotton_A_12989_CDS 26 85 26 87 PF13921.6 Myb_DNA-bind_6 Domain 1 58 60 52.0 6.4e-14 1 CL0123
Cotton_A_17800_CDS 12 94 12 94 PF01749.20 IBB Family 1 90 90 82.8 1.7e-23 1 CL0020
Cotton_A_17800_CDS 105 145 104 145 PF00514.23 Arm Repeat 2 41 41 41.2 1.1e-10 1 CL0020
Cotton_A_17800_CDS 148 186 147 187 PF00514.23 Arm Repeat 2 40 41 50.3 1.5e-13 1 CL0020
Cotton_A_17800_CDS 189 230 189 230 PF00514.23 Arm Repeat 1 41 41 32.7 5.2e-08 1 CL0020
Cotton_A_17800_CDS 243 271 240 271 PF00514.23 Arm Repeat 13 41 41 28.3 1.2e-06 1 CL0020
Cotton_A_17800_CDS 274 312 273 313 PF00514.23 Arm Repeat 2 40 41 36.4 3.6e-09 1 CL0020
Cotton_A_17800_CDS 316 356 315 356 PF00514.23 Arm Repeat 2 41 41 37.8 1.3e-09 1 CL0020
Cotton_A_17800_CDS 358 397 358 398 PF00514.23 Arm Repeat 1 40 41 45.8 3.8e-12 1 CL0020
Cotton_A_17800_CDS 403 438 401 440 PF00514.23 Arm Repeat 3 38 41 27.6 2.1e-06 1 CL0020
Cotton_A_17800_CDS 458 499 455 509 PF16186.5 Arm_3 Family 4 45 53 69.1 1.7e-19 1 CL0020
Cotton_A_37846_CDS 3 162 1 162 PF04185.14 Phosphoesterase Family 212 356 356 177.6 3.9e-52 1 CL0088
Cotton_A_08614_CDS 9 130 7 138 PF05659.11 RPW8 Family 10 130 139 46.2 3.5e-12 1 No_clan
Cotton_A_08614_CDS 184 415 181 416 PF00931.22 NB-ARC Domain 6 251 252 104.8 4e-30 1 CL0023
Cotton_A_11024_CDS 123 540 121 540 PF00854.21 PTR2 Family 3 395 395 255.3 8.6e-76 1 CL0015
Cotton_A_07402_CDS 65 154 64 155 PF00166.21 Cpn10 Domain 2 92 93 99.8 6.9e-29 1 CL0296
Cotton_A_07402_CDS 163 254 162 255 PF00166.21 Cpn10 Domain 2 92 93 93.5 6.4e-27 1 CL0296
Cotton_A_20841_CDS 208 409 66 412 PF01544.18 CorA Family 99 288 292 98.2 5.4e-28 1 No_clan
Cotton_A_05689_CDS 14 80 13 81 PF01423.22 LSM Domain 2 66 67 64.7 4.6e-18 1 CL0527
Cotton_A_36374_CDS 42 143 36 147 PF01277.17 Oleosin Family 7 108 113 98.7 1.7e-28 1 No_clan
Cotton_A_05630_CDS 81 225 78 229 PF10358.9 NT-C2 Family 4 142 146 51.1 1.1e-13 1 CL0154
Cotton_A_10441_CDS 73 189 73 189 PF00763.23 THF_DHG_CYH Domain 1 116 116 147.3 2e-43 1 CL0603
Cotton_A_10441_CDS 192 358 192 359 PF02882.19 THF_DHG_CYH_C Domain 1 159 160 231.0 4.1e-69 1 CL0063
Cotton_A_20175_CDS 14 385 13 389 PF00145.17 DNA_methylase Domain 2 331 335 126.3 1.6e-36 1 CL0063
Cotton_A_37971_CDS 33 351 31 363 PF00743.19 FMO-like Family 6 335 532 88.9 2.5e-25 1 CL0063
Cotton_A_08758_CDS 53 155 53 156 PF08241.12 Methyltransf_11 Domain 1 95 96 51.3 1.4e-13 1 CL0063
Cotton_A_26474_CDS 107 226 106 228 PF02893.20 GRAM Domain 2 112 114 72.0 3.5e-20 1 CL0266
Cotton_A_17987_CDS 195 244 193 244 PF00847.20 AP2 Domain 3 54 54 46.5 3.2e-12 1 CL0081
Cotton_A_25154_CDS 5 66 3 69 PF02798.20 GST_N Domain 3 66 76 42.7 5.5e-11 1 CL0172
Cotton_A_25154_CDS 154 195 131 201 PF00848.19 Ring_hydroxyl_A Domain 166 206 214 34.8 1.6e-08 1 CL0209
Cotton_A_25154_CDS 291 474 272 474 PF13839.6 PC-Esterase Family 53 239 283 106.0 2.9e-30 1 CL0264
Cotton_A_28937_CDS 2 424 1 424 PF00854.21 PTR2 Family 12 395 395 264.0 1.9e-78 1 CL0015
Cotton_A_09526_CDS 8 60 7 60 PF14416.6 PMR5N Domain 2 53 53 76.3 1.6e-21 1 No_clan
Cotton_A_09526_CDS 61 361 61 362 PF13839.6 PC-Esterase Family 1 282 283 305.6 4.3e-91 1 CL0264
Cotton_A_18449_CDS 12 102 11 103 PF13334.6 DUF4094 Family 2 87 88 99.5 1.1e-28 1 No_clan
Cotton_A_18449_CDS 142 339 142 340 PF01762.21 Galactosyl_T Family 1 194 195 162.1 1.3e-47 1 CL0110
Cotton_A_14597_CDS 46 174 20 175 PF14543.6 TAXi_N Domain 35 177 178 85.0 7.1e-24 1 CL0129
Cotton_A_14597_CDS 192 246 181 247 PF14541.6 TAXi_C Domain 104 160 161 28.8 9.2e-07 1 CL0129
Cotton_A_16851_CDS 14 94 1 96 PF00125.24 Histone Domain 48 129 131 53.6 2.8e-14 1 CL0012
Cotton_A_16851_CDS 97 130 97 131 PF16211.5 Histone_H2A_C Family 1 34 35 64.8 4.2e-18 1 No_clan
Cotton_A_36852_CDS 36 79 29 79 PF07333.12 SLR1-BP Domain 8 58 58 30.2 4.5e-07 1 CL0054
Cotton_A_12802_CDS 227 353 227 354 PF00134.23 Cyclin_N Domain 1 126 127 152.0 6.4e-45 1 CL0065
Cotton_A_12802_CDS 356 475 356 479 PF02984.19 Cyclin_C Domain 1 115 119 120.4 4.3e-35 1 CL0065
Cotton_A_25067_CDS 132 181 131 182 PF00847.20 AP2 Domain 2 53 54 48.8 6.1e-13 1 CL0081
Cotton_A_23689_CDS 14 355 14 357 PF01070.18 FMN_dh Domain 1 346 348 457.8 2.2e-137 1 CL0036
Cotton_A_29102_CDS 105 131 104 132 PF01535.20 PPR Family 4 30 31 19.2 0.001 1 CL0020
Cotton_A_29102_CDS 137 165 137 167 PF01535.20 PPR Family 1 29 31 14.7 0.027 1 CL0020
Cotton_A_29102_CDS 168 200 167 200 PF12854.7 PPR_1 Repeat 2 34 34 33.4 2.7e-08 1 CL0020
Cotton_A_29102_CDS 208 251 207 254 PF13041.6 PPR_2 Repeat 3 46 50 36.5 4.1e-09 1 CL0020
Cotton_A_29102_CDS 275 323 275 323 PF13041.6 PPR_2 Repeat 1 49 50 44.2 1.6e-11 1 CL0020
Cotton_A_00801_CDS 3 272 1 272 PF06454.11 DUF1084 Family 4 273 273 421.7 1.2e-126 1 No_clan
Cotton_A_32233_CDS 123 231 120 233 PF00782.20 DSPc Domain 21 131 133 42.7 4.5e-11 1 CL0031
Cotton_A_05809_CDS 91 259 90 262 PF00270.29 DEAD Domain 2 174 176 63.9 1.5e-17 1 CL0023
Cotton_A_05809_CDS 310 406 297 407 PF00271.31 Helicase_C Family 14 110 111 55.2 7.5e-15 1 CL0023
Cotton_A_05809_CDS 419 475 418 475 PF16124.5 RecQ_Zn_bind Domain 2 66 66 40.1 4.6e-10 1 No_clan
Cotton_A_05809_CDS 480 596 479 599 PF09382.10 RQC Domain 2 111 114 32.1 7.8e-08 1 CL0123
Cotton_A_05809_CDS 617 687 614 688 PF00570.23 HRDC Domain 7 67 68 21.8 0.00013 1 CL0426
Cotton_A_24445_CDS 115 431 91 431 PF00225.23 Kinesin Domain 27 333 333 358.5 2.8e-107 1 CL0023
Cotton_A_03688_CDS 86 413 86 419 PF00295.17 Glyco_hydro_28 Domain 1 320 325 347.0 9e-104 1 CL0268
Cotton_A_22191_CDS 328 376 327 376 PF00415.18 RCC1 Repeat 2 50 50 42.3 8.6e-11 1 CL0186
Cotton_A_22191_CDS 379 431 379 431 PF00415.18 RCC1 Repeat 1 50 50 39.6 5.9e-10 1 CL0186
Cotton_A_22191_CDS 435 483 434 483 PF00415.18 RCC1 Repeat 2 50 50 45.4 9.1e-12 1 CL0186
Cotton_A_22191_CDS 498 547 498 547 PF00415.18 RCC1 Repeat 1 50 50 49.4 5.4e-13 1 CL0186
Cotton_A_22191_CDS 550 599 550 599 PF00415.18 RCC1 Repeat 1 50 50 29.7 7.5e-07 1 CL0186
Cotton_A_22191_CDS 604 651 604 651 PF00415.18 RCC1 Repeat 3 50 50 47.2 2.6e-12 1 CL0186
Cotton_A_22191_CDS 661 721 654 722 PF01363.21 FYVE Domain 8 67 68 44.1 1.6e-11 1 CL0390
Cotton_A_22191_CDS 928 963 928 964 PF13713.6 BRX_N Domain 1 36 37 58.6 3.6e-16 1 No_clan
Cotton_A_22191_CDS 970 1035 968 1037 PF16627.5 BRX_assoc Disordered 3 68 70 60.6 1.2e-16 1 No_clan
Cotton_A_22191_CDS 1044 1098 1043 1098 PF08381.11 BRX Domain 2 56 56 97.7 1.8e-28 1 No_clan
Cotton_A_35500_CDS 1 18 1 21 PF02533.15 PsbK Family 20 37 41 33.3 3.8e-08 1 No_clan
Cotton_A_15536_CDS 37 210 37 216 PF01273.25 LBP_BPI_CETP Family 1 158 164 71.5 6.2e-20 1 CL0648
Cotton_A_15536_CDS 275 468 214 475 PF02886.17 LBP_BPI_CETP_C Domain 32 231 238 112.4 2.3e-32 1 CL0648
Cotton_A_34184_CDS 17 53 10 54 PF13812.6 PPR_3 Repeat 26 62 63 24.1 2.8e-05 1 CL0020
Cotton_A_34751_CDS 36 231 32 231 PF05757.11 PsbQ Family 4 200 200 274.6 4.6e-82 1 No_clan
Cotton_A_11279_CDS 2 58 1 59 PF00403.26 HMA Domain 3 61 62 51.5 1e-13 1 No_clan
Cotton_A_19867_CDS 41 199 41 199 PF13326.6 PSII_Pbs27 Family 1 141 141 180.0 2.9e-53 1 No_clan
Cotton_A_34932_CDS 1 74 1 77 PF00421.19 PSII Family 428 504 507 82.8 2.1e-23 1 No_clan
Cotton_A_13345_CDS 48 224 46 266 PF00231.19 ATP-synt Domain 3 186 279 132.3 2.7e-38 1 No_clan
Cotton_A_37284_CDS 20 59 19 59 PF08263.12 LRRNT_2 Family 2 41 41 41.0 1.8e-10 1 No_clan
Cotton_A_37284_CDS 110 170 110 170 PF13855.6 LRR_8 Repeat 1 61 61 35.3 7e-09 1 CL0022
Cotton_A_37284_CDS 283 554 282 556 PF00069.25 Pkinase Domain 2 260 264 145.2 2.3e-42 1 CL0016
Cotton_A_20698_CDS 120 159 119 160 PF14700.6 RPOL_N Domain 289 329 336 34.2 1.8e-08 1 No_clan
Cotton_A_06064_CDS 33 149 30 149 PF00188.26 CAP Domain 4 126 126 81.0 1.3e-22 1 CL0659
Cotton_A_33704_CDS 50 116 50 118 PF12265.8 CAF1C_H4-bd Family 1 65 67 44.9 1.1e-11 1 No_clan
Cotton_A_33704_CDS 197 232 193 232 PF00400.32 WD40 Repeat 5 38 38 16.5 0.011 1 CL0186
Cotton_A_33704_CDS 265 300 262 300 PF00400.32 WD40 Repeat 5 38 38 12.9 0.16 1 CL0186
Cotton_A_33704_CDS 313 345 306 345 PF00400.32 WD40 Repeat 8 38 38 20.7 0.00054 1 CL0186
Cotton_A_33704_CDS 355 394 355 394 PF00400.32 WD40 Repeat 1 38 38 25.5 1.6e-05 1 CL0186
Cotton_A_08703_CDS 10 55 10 57 PF00319.18 SRF-TF Domain 1 46 48 89.8 5.4e-26 1 No_clan
Cotton_A_37815_CDS 2 89 1 96 PF00067.22 p450 Domain 369 456 463 72.5 2.9e-20 1 No_clan
Cotton_A_26720_CDS 116 336 116 337 PF02358.16 Trehalose_PPase Family 1 232 233 233.1 2.2e-69 1 CL0137
Cotton_A_02454_CDS 88 199 88 202 PF00072.24 Response_reg Domain 1 109 112 73.4 1.6e-20 1 CL0304
Cotton_A_37445_CDS 342 596 341 597 PF01803.16 LIM_bind Family 2 240 241 204.5 1.8e-60 1 No_clan
Cotton_A_06827_CDS 156 248 148 248 PF01554.18 MatE Family 71 161 161 44.8 1e-11 1 CL0222
Cotton_A_06827_CDS 308 453 305 464 PF01554.18 MatE Family 5 150 161 42.8 4.1e-11 1 CL0222
Cotton_A_13847_CDS 28 106 27 109 PF07011.11 Elf4 Domain 2 80 83 131.8 6.2e-39 1 No_clan
Cotton_A_13880_CDS 64 136 61 136 PF00111.27 Fer2 Domain 4 78 78 67.5 7.1e-19 1 CL0486
Cotton_A_28282_CDS 25 64 24 64 PF08263.12 LRRNT_2 Family 2 41 41 44.1 1.8e-11 1 No_clan
Cotton_A_28282_CDS 92 151 91 151 PF13855.6 LRR_8 Repeat 2 61 61 27.9 1.5e-06 1 CL0022
Cotton_A_28282_CDS 164 180 164 187 PF00560.33 LRR_1 Repeat 1 17 23 9.7 1.5 1 CL0022
Cotton_A_28282_CDS 290 375 287 376 PF07714.17 Pkinase_Tyr Domain 4 94 259 47.4 1.5e-12 1 CL0016
Cotton_A_03885_CDS 2 228 2 230 PF12481.8 DUF3700 Domain 1 226 228 351.6 1.6e-105 1 CL0052
Cotton_A_16406_CDS 46 288 46 288 PF07250.11 Glyoxal_oxid_N Family 1 240 240 377.1 2.7e-113 1 No_clan
Cotton_A_16406_CDS 443 547 443 548 PF09118.11 DUF1929 Domain 1 95 96 87.0 8e-25 1 CL0159
Cotton_A_00519_CDS 35 231 35 231 PF04427.18 Brix Domain 1 193 193 100.7 1.1e-28 1 CL0458
Cotton_A_07704_CDS 34 73 33 73 PF03911.16 Sec61_beta Family 2 41 41 67.7 6.2e-19 1 No_clan
Cotton_A_08474_CDS 26 285 25 289 PF12056.8 DUF3537 Family 2 261 390 360.7 8e-108 1 No_clan
Cotton_A_08474_CDS 434 467 432 468 PF05627.11 AvrRpt-cleavage Domain 3 36 37 56.8 9.7e-16 1 No_clan
Cotton_A_02164_CDS 91 122 42 122 PF03765.15 CRAL_TRIO_N Domain 27 54 54 29.7 5.6e-07 1 CL0214
Cotton_A_02164_CDS 146 313 145 313 PF00650.20 CRAL_TRIO Domain 2 159 159 108.7 2.2e-31 1 CL0512
Cotton_A_27410_CDS 4 85 2 86 PF00276.20 Ribosomal_L23 Family 3 84 86 68.0 6.8e-19 1 No_clan
Cotton_A_36484_CDS 65 214 64 215 PF00190.22 Cupin_1 Domain 2 150 151 177.3 1.4e-52 1 CL0029
Cotton_A_18873_CDS 29 207 27 208 PF00722.21 Glyco_hydro_16 Domain 3 176 177 191.0 1.2e-56 1 CL0004
Cotton_A_18873_CDS 238 286 237 286 PF06955.12 XET_C Family 2 47 47 69.7 1.3e-19 1 CL0004
Cotton_A_38430_CDS 158 278 158 279 PF01794.19 Ferric_reduct Family 1 124 125 65.9 3.6e-18 1 CL0328
Cotton_A_38430_CDS 311 409 309 410 PF08022.12 FAD_binding_8 Domain 3 108 109 70.9 8.1e-20 1 CL0076
Cotton_A_38430_CDS 417 670 417 670 PF08030.12 NAD_binding_6 Domain 1 156 156 82.4 3.7e-23 1 CL0091
Cotton_A_15062_CDS 81 217 81 219 PF01565.23 FAD_binding_4 Domain 1 136 139 90.4 8.4e-26 1 CL0077
Cotton_A_15062_CDS 471 525 471 525 PF08031.12 BBE Domain 1 46 46 73.9 8e-21 1 CL0277
Cotton_A_12812_CDS 65 129 63 130 PF00190.22 Cupin_1 Domain 3 66 151 62.4 3.5e-17 1 CL0029
Cotton_A_07002_CDS 147 199 147 203 PF00403.26 HMA Domain 1 57 62 47.8 1.5e-12 1 No_clan
Cotton_A_35264_CDS 1 40 1 40 PF07526.11 POX Domain 97 136 136 49.1 8.3e-13 1 No_clan
Cotton_A_35264_CDS 108 147 108 147 PF05920.11 Homeobox_KN Family 1 40 40 64.9 4.3e-18 1 CL0123
Cotton_A_20419_CDS 4 67 1 67 PF00118.24 Cpn60_TCP1 Family 344 407 491 43.4 1.7e-11 1 No_clan
Cotton_A_37191_CDS 101 259 100 262 PF02518.26 HATPase_c Domain 2 109 112 45.7 7.9e-12 1 CL0025
Cotton_A_37191_CDS 265 767 265 776 PF00183.18 HSP90 Family 1 509 517 644.3 1.6e-193 1 No_clan
Cotton_A_28709_CDS 28 133 27 134 PF01966.22 HD Family 3 121 122 32.8 6.6e-08 1 CL0237
Cotton_A_17682_CDS 84 458 73 471 PF01704.18 UDPGP Family 17 355 413 159.6 9.3e-47 1 CL0110
Cotton_A_21632_CDS 12 59 2 59 PF13561.6 adh_short_C2 Domain 188 234 234 31.0 1.8e-07 1 CL0063
Cotton_A_10450_CDS 1 26 1 26 PF01535.20 PPR Family 6 31 31 14.2 0.04 1 CL0020
Cotton_A_10450_CDS 69 88 66 94 PF01535.20 PPR Family 4 23 31 12.0 0.19 1 CL0020
Cotton_A_10450_CDS 94 143 94 143 PF13041.6 PPR_2 Repeat 1 50 50 44.3 1.5e-11 1 CL0020
Cotton_A_10450_CDS 195 242 195 244 PF13041.6 PPR_2 Repeat 1 48 50 43.6 2.4e-11 1 CL0020
Cotton_A_10450_CDS 270 295 269 297 PF01535.20 PPR Family 2 27 31 14.5 0.031 1 CL0020
Cotton_A_36005_CDS 11 147 6 148 PF00892.20 EamA Family 5 136 137 34.5 2e-08 1 CL0184
Cotton_A_36005_CDS 172 309 170 310 PF00892.20 EamA Family 3 136 137 39.0 8.3e-10 1 CL0184
Cotton_A_22109_CDS 90 175 90 175 PF01336.25 tRNA_anti-codon Domain 1 76 76 47.1 1.7e-12 1 CL0021
Cotton_A_22109_CDS 198 636 197 637 PF00152.20 tRNA-synt_2 Domain 2 313 314 357.1 7e-107 1 CL0040
Cotton_A_22109_CDS 389 488 389 488 PF02938.14 GAD Domain 1 95 95 66.6 1.8e-18 1 CL0250
Cotton_A_34735_CDS 28 124 27 125 PF01657.17 Stress-antifung Family 2 94 95 59.0 5.3e-16 1 No_clan
Cotton_A_34735_CDS 146 237 139 238 PF01657.17 Stress-antifung Family 9 94 95 47.5 2.1e-12 1 No_clan
Cotton_A_34735_CDS 341 604 339 608 PF00069.25 Pkinase Domain 3 257 264 164.5 3e-48 1 CL0016
Cotton_A_38568_CDS 34 252 25 262 PF06632.12 XRCC4 Family 31 248 337 53.3 1.9e-14 1 No_clan
Cotton_A_31977_CDS 14 347 12 348 PF03214.13 RGP Family 3 341 342 595.3 3.5e-179 1 CL0110
Cotton_A_11486_CDS 47 135 45 140 PF12796.7 Ank_2 Repeat 3 80 83 40.5 3.2e-10 1 CL0465
Cotton_A_11486_CDS 138 199 132 205 PF12796.7 Ank_2 Repeat 24 77 83 29.0 1.2e-06 1 CL0465
Cotton_A_11486_CDS 210 262 209 262 PF13637.6 Ank_4 Repeat 3 54 55 24.1 4e-05 1 CL0465
Cotton_A_11486_CDS 383 510 379 512 PF01529.20 DHHC Family 6 132 134 106.8 8.9e-31 1 No_clan
Cotton_A_19573_CDS 214 267 212 274 PF00170.21 bZIP_1 Family 4 57 64 46.3 3.3e-12 1 CL0018
Cotton_A_19573_CDS 282 390 282 402 PF12498.8 bZIP_C Family 1 109 123 69.6 4.5e-19 1 No_clan
Cotton_A_23235_CDS 4 101 3 101 PF00438.20 S-AdoMet_synt_N Domain 2 99 99 145.1 8.4e-43 1 No_clan
Cotton_A_23235_CDS 117 238 117 238 PF02772.16 S-AdoMet_synt_M Domain 1 120 120 160.1 2.4e-47 1 No_clan
Cotton_A_23235_CDS 240 381 240 382 PF02773.16 S-AdoMet_synt_C Domain 1 137 138 211.2 5e-63 1 No_clan
Cotton_A_14486_CDS 33 72 32 72 PF08263.12 LRRNT_2 Family 3 41 41 47.8 1.3e-12 1 No_clan
Cotton_A_14486_CDS 173 232 172 232 PF13855.6 LRR_8 Repeat 2 61 61 34.4 1.3e-08 1 CL0022
Cotton_A_41109_CDS 263 299 262 300 PF00400.32 WD40 Repeat 2 37 38 22.2 0.00019 1 CL0186
Cotton_A_41109_CDS 309 344 306 344 PF00400.32 WD40 Repeat 4 38 38 18.4 0.0029 1 CL0186
Cotton_A_41109_CDS 348 385 348 386 PF00400.32 WD40 Repeat 1 37 38 20.2 0.00077 1 CL0186
Cotton_A_41109_CDS 475 513 473 514 PF00400.32 WD40 Repeat 3 37 38 14.1 0.068 1 CL0186
Cotton_A_41109_CDS 519 556 518 556 PF00400.32 WD40 Repeat 2 37 38 33.7 4.3e-08 1 CL0186
Cotton_A_10157_CDS 72 197 68 197 PF13561.6 adh_short_C2 Domain 115 234 234 115.2 3.3e-33 1 CL0063
Cotton_A_14055_CDS 27 70 27 74 PF00646.33 F-box Domain 1 44 48 38.5 7.3e-10 1 CL0271
Cotton_A_04889_CDS 31 363 31 374 PF00421.19 PSII Family 1 365 507 386.6 1.8e-115 1 No_clan
Cotton_A_11951_CDS 22 58 18 59 PF00400.32 WD40 Repeat 5 37 38 16.9 0.0086 1 CL0186
Cotton_A_11951_CDS 76 100 63 100 PF00400.32 WD40 Repeat 13 37 38 14.1 0.069 1 CL0186
Cotton_A_02064_CDS 9 53 9 53 PF03107.16 C1_2 Domain 1 47 47 39.8 4e-10 1 CL0006
Cotton_A_02064_CDS 74 109 60 109 PF03107.16 C1_2 Domain 12 47 47 29.7 6.1e-07 1 CL0006
Cotton_A_01273_CDS 223 385 220 411 PF01852.19 START Domain 17 179 209 38.3 8.9e-10 1 CL0209
Cotton_A_01273_CDS 527 732 527 733 PF07059.12 DUF1336 Family 1 228 229 217.6 2.4e-64 1 No_clan
Cotton_A_06527_CDS 16 69 16 69 PF08766.11 DEK_C Domain 1 54 54 47.0 1.8e-12 1 No_clan
Cotton_A_36601_CDS 148 428 147 430 PF03016.15 Exostosin Family 2 298 300 190.8 3e-56 1 No_clan
Cotton_A_26176_CDS 77 326 56 330 PF00481.21 PP2C Family 30 255 258 136.7 1.1e-39 1 CL0238
Cotton_A_21543_CDS 72 172 52 200 PF03007.16 WES_acyltransf Domain 71 171 264 28.6 1.1e-06 1 CL0149
Cotton_A_21543_CDS 310 455 310 455 PF06974.13 DUF1298 Family 1 145 145 147.9 1.9e-43 1 No_clan
Cotton_A_15088_CDS 13 137 9 151 PF02453.17 Reticulon Family 13 137 157 58.7 6.6e-16 1 CL0484
Cotton_A_25771_CDS 70 287 70 288 PF07859.13 Abhydrolase_3 Domain 1 210 211 178.6 1.4e-52 1 CL0028
Cotton_A_18085_CDS 166 228 163 243 PF00931.22 NB-ARC Domain 4 73 252 28.2 9.5e-07 1 CL0023
Cotton_A_09569_CDS 21 173 20 173 PF04949.13 Transcrip_act Family 2 154 154 239.1 1.7e-71 1 No_clan
Cotton_A_16892_CDS 14 85 7 104 PF18052.1 Rx_N Domain 9 77 93 28.4 1.5e-06 1 No_clan
Cotton_A_07386_CDS 19 413 19 413 PF09334.11 tRNA-synt_1g Family 1 391 391 508.7 8.8e-153 1 CL0039
Cotton_A_07386_CDS 644 739 644 739 PF01588.20 tRNA_bind Domain 1 96 96 114.0 2.5e-33 1 CL0021
Cotton_A_26868_CDS 69 134 68 156 PF13442.6 Cytochrome_CBB3 Domain 2 57 67 38.6 1e-09 1 CL0318
Cotton_A_08666_CDS 28 107 28 109 PF05922.16 Inhibitor_I9 Domain 1 80 82 53.7 2.5e-14 1 CL0570
Cotton_A_08666_CDS 132 578 132 591 PF00082.22 Peptidase_S8 Domain 1 285 298 161.9 2e-47 1 No_clan
Cotton_A_08666_CDS 643 745 643 745 PF17766.1 fn3_6 Domain 1 99 99 95.3 2e-27 1 CL0159
Cotton_A_04777_CDS 122 290 122 290 PF10520.9 TMEM189_B_dmain Domain 1 173 173 214.4 1.2e-63 1 No_clan
Cotton_A_06516_CDS 35 463 35 463 PF04857.20 CAF1 Family 1 319 319 291.7 6.2e-87 1 CL0219
Cotton_A_03946_CDS 48 382 46 384 PF01094.28 ANF_receptor Family 3 352 354 144.6 4e-42 1 CL0144
Cotton_A_03946_CDS 532 782 531 784 PF00060.26 Lig_chan Family 2 147 149 112.5 1.5e-32 1 CL0030
Cotton_A_30397_CDS 55 188 54 199 PF00999.21 Na_H_Exchanger Family 62 193 381 87.6 7.2e-25 1 CL0064
Cotton_A_30397_CDS 195 360 185 361 PF00999.21 Na_H_Exchanger Family 224 380 381 67.2 1.1e-18 1 CL0064
Cotton_A_17174_CDS 318 359 317 362 PF12937.7 F-box-like Domain 2 44 48 25.7 7.9e-06 1 CL0271
Cotton_A_27073_CDS 38 339 38 341 PF00459.25 Inositol_P Family 1 270 272 194.2 3e-57 1 CL0171
Cotton_A_32185_CDS 18 138 17 138 PF00903.25 Glyoxalase Domain 2 128 128 46.5 3.7e-12 1 CL0104
Cotton_A_08621_CDS 44 125 43 125 PF14389.6 Lzipper-MIP1 Family 2 84 84 79.4 1.8e-22 1 No_clan
Cotton_A_08621_CDS 338 467 337 467 PF04784.14 DUF547 Family 2 123 123 121.3 2.3e-35 1 No_clan
Cotton_A_09451_CDS 549 592 548 594 PF02213.16 GYF Domain 3 43 45 39.4 3.5e-10 1 CL0673
Cotton_A_30619_CDS 2 67 1 67 PF00006.25 ATP-synt_ab Domain 146 213 213 57.1 1.9e-15 1 CL0023
Cotton_A_19251_CDS 35 176 34 185 PF00561.20 Abhydrolase_1 Domain 3 121 257 70.2 2.1e-19 1 CL0028
Cotton_A_14764_CDS 41 239 25 240 PF00687.21 Ribosomal_L1 Domain 9 203 204 204.7 1.3e-60 1 No_clan
Cotton_A_17339_CDS 24 90 24 90 PF02874.23 ATP-synt_ab_N Domain 1 69 69 50.8 1.8e-13 1 CL0275
Cotton_A_17339_CDS 147 377 147 377 PF00006.25 ATP-synt_ab Domain 1 213 213 227.9 1e-67 1 CL0023
Cotton_A_31274_CDS 5 124 2 147 PF00082.22 Peptidase_S8 Domain 56 173 298 41.1 1.2e-10 1 No_clan
Cotton_A_14838_CDS 10 64 10 66 PF00412.22 LIM Domain 1 56 58 42.1 7.4e-11 1 CL0167
Cotton_A_14838_CDS 110 164 110 166 PF00412.22 LIM Domain 1 56 58 45.2 7.8e-12 1 CL0167
Cotton_A_18234_CDS 42 351 42 354 PF00657.22 Lipase_GDSL Family 1 197 200 63.8 2e-17 1 CL0264
Cotton_A_20693_CDS 33 139 33 140 PF04398.12 DUF538 Family 1 111 112 126.6 5.8e-37 1 No_clan
Cotton_A_00381_CDS 29 277 25 279 PF00139.19 Lectin_legB Domain 6 247 249 243.6 2.1e-72 1 CL0004
Cotton_A_00381_CDS 347 554 346 615 PF00069.25 Pkinase Domain 2 204 264 161.7 2.1e-47 1 CL0016
Cotton_A_03711_CDS 2 64 1 64 PF16719.5 SAWADEE Domain 79 141 141 57.2 1.7e-15 1 CL0049
Cotton_A_14014_CDS 65 128 65 128 PF00462.24 Glutaredoxin Domain 1 60 60 35.1 1.2e-08 1 CL0172
Cotton_A_22333_CDS 26 87 26 87 PF00226.31 DnaJ Domain 1 63 63 89.7 9.7e-26 1 CL0392
Cotton_A_21449_CDS 160 558 159 559 PF07690.16 MFS_1 Family 2 352 353 183.4 5.6e-54 1 CL0015
Cotton_A_02749_CDS 36 319 19 321 PF03643.15 Vps26 Family 20 273 275 113.6 7.9e-33 1 CL0135
Cotton_A_11188_CDS 1 132 1 132 PF00125.24 Histone Domain 1 131 131 181.3 9.3e-54 1 CL0012
Cotton_A_12619_CDS 83 350 77 431 PF00266.19 Aminotran_5 Domain 44 302 371 67.4 1.1e-18 1 CL0061
Cotton_A_18023_CDS 47 287 47 287 PF07250.11 Glyoxal_oxid_N Family 1 240 240 354.8 1.7e-106 1 No_clan
Cotton_A_18023_CDS 442 536 442 536 PF09118.11 DUF1929 Domain 1 84 96 63.7 1.5e-17 1 CL0159
Cotton_A_00668_CDS 46 110 8 115 PF02519.14 Auxin_inducible Family 22 84 90 71.9 3.5e-20 1 No_clan
Cotton_A_29869_CDS 190 457 188 459 PF00069.25 Pkinase Domain 3 260 264 165.8 1.2e-48 1 CL0016
Cotton_A_08490_CDS 4 334 3 335 PF08569.11 Mo25 Family 2 326 327 412.7 1.2e-123 1 CL0020
Cotton_A_24657_CDS 225 584 225 587 PF03081.15 Exo70 Family 1 373 376 377.5 7e-113 1 CL0295
Cotton_A_16298_CDS 14 445 3 445 PF00171.22 Aldedh Family 29 462 462 276.5 3.2e-82 1 CL0099
Cotton_A_09343_CDS 898 992 895 1017 PF10198.9 Ada3 Family 4 100 132 30.1 4.5e-07 1 No_clan
Cotton_A_35022_CDS 108 453 107 453 PF00443.29 UCH Family 2 257 257 155.5 1.8e-45 1 CL0125
Cotton_A_24410_CDS 63 311 54 312 PF03514.14 GRAS Family 110 373 374 160.5 5.6e-47 1 CL0063
Cotton_A_15330_CDS 36 82 35 84 PF13041.6 PPR_2 Repeat 2 48 50 32.7 6.5e-08 1 CL0020
Cotton_A_15330_CDS 110 133 109 136 PF01535.20 PPR Family 3 26 31 11.6 0.26 1 CL0020
Cotton_A_33409_CDS 116 238 115 238 PF12923.7 RRP7 Domain 2 119 119 91.5 3.8e-26 1 No_clan
Cotton_A_11061_CDS 197 331 195 356 PF13847.6 Methyltransf_31 Domain 9 111 152 27.9 1.7e-06 1 CL0063
Cotton_A_21183_CDS 2 88 1 108 PF13359.6 DDE_Tnp_4 Domain 53 129 158 28.9 8e-07 1 CL0219
Cotton_A_23241_CDS 715 861 706 864 PF00481.21 PP2C Family 126 252 258 77.4 1.4e-21 1 CL0238
Cotton_A_15772_CDS 48 104 48 104 PF08246.12 Inhibitor_I29 Domain 1 58 58 58.1 8.8e-16 1 No_clan
Cotton_A_15772_CDS 134 348 134 349 PF00112.23 Peptidase_C1 Domain 1 217 218 274.0 1.2e-81 1 CL0125
Cotton_A_17802_CDS 31 139 31 142 PF00072.24 Response_reg Domain 1 109 112 87.8 5.2e-25 1 CL0304
Cotton_A_20245_CDS 93 231 91 231 PF11934.8 DUF3452 Family 3 137 137 107.1 4.9e-31 1 CL0065
Cotton_A_20245_CDS 414 613 414 613 PF01858.17 RB_A Domain 1 197 197 210.6 2e-62 1 CL0065
Cotton_A_20245_CDS 739 866 738 866 PF01857.20 RB_B Domain 2 132 132 140.8 2.5e-41 1 CL0065
Cotton_A_14146_CDS 12 189 12 193 PF01582.20 TIR Family 1 172 176 142.6 1.1e-41 1 CL0173
Cotton_A_14146_CDS 202 425 194 437 PF00931.22 NB-ARC Domain 11 238 252 97.2 8.8e-28 1 CL0023
Cotton_A_38629_CDS 12 326 7 335 PF00295.17 Glyco_hydro_28 Domain 17 323 325 312.4 3.2e-93 1 CL0268
Cotton_A_01119_CDS 22 84 20 85 PF00690.26 Cation_ATPase_N Domain 4 68 69 48.5 5.1e-13 1 No_clan
Cotton_A_01119_CDS 133 311 131 312 PF00122.20 E1-E2_ATPase Family 3 180 181 163.8 2.9e-48 1 No_clan
Cotton_A_01119_CDS 328 605 328 605 PF00702.26 Hydrolase Domain 1 210 210 70.2 2.9e-19 1 CL0137
Cotton_A_13578_CDS 248 279 246 279 PF12854.7 PPR_1 Repeat 3 34 34 34.6 1.2e-08 1 CL0020
Cotton_A_13578_CDS 285 334 285 334 PF13041.6 PPR_2 Repeat 1 50 50 64.3 8.5e-18 1 CL0020
Cotton_A_13578_CDS 355 404 355 404 PF13041.6 PPR_2 Repeat 1 50 50 58.9 4e-16 1 CL0020
Cotton_A_13578_CDS 429 457 428 458 PF01535.20 PPR Family 2 30 31 11.4 0.3 1 CL0020
Cotton_A_13578_CDS 466 493 464 493 PF01535.20 PPR Family 4 31 31 13.7 0.057 1 CL0020
Cotton_A_13578_CDS 498 528 498 528 PF01535.20 PPR Family 1 31 31 28.7 9.2e-07 1 CL0020
Cotton_A_13578_CDS 531 576 530 579 PF13041.6 PPR_2 Repeat 2 47 50 62.4 3.4e-17 1 CL0020
Cotton_A_13578_CDS 603 627 603 629 PF01535.20 PPR Family 1 25 31 13.2 0.085 1 CL0020
Cotton_A_13578_CDS 636 684 635 684 PF13041.6 PPR_2 Repeat 2 50 50 63.3 1.8e-17 1 CL0020
Cotton_A_13578_CDS 705 754 705 754 PF13041.6 PPR_2 Repeat 1 50 50 56.9 1.8e-15 1 CL0020
Cotton_A_13578_CDS 771 798 771 798 PF12854.7 PPR_1 Repeat 1 28 34 37.2 1.7e-09 1 CL0020
Cotton_A_09406_CDS 143 254 142 312 PF13506.6 Glyco_transf_21 Domain 3 111 173 28.6 8.3e-07 1 CL0110
Cotton_A_10480_CDS 36 126 34 128 PF00153.27 Mito_carr Family 3 95 97 79.2 1.6e-22 1 No_clan
Cotton_A_10480_CDS 131 217 128 220 PF00153.27 Mito_carr Family 4 94 97 72.1 2.7e-20 1 No_clan
Cotton_A_10480_CDS 227 320 225 322 PF00153.27 Mito_carr Family 3 95 97 78.7 2.3e-22 1 No_clan
Cotton_A_09496_CDS 101 261 101 261 PF14543.6 TAXi_N Domain 1 178 178 167.6 3.1e-49 1 CL0129
Cotton_A_09496_CDS 286 436 286 437 PF14541.6 TAXi_C Domain 1 160 161 117.4 4.9e-34 1 CL0129
Cotton_A_39279_CDS 8 458 6 459 PF02458.15 Transferase Family 4 433 434 371.8 3.8e-111 1 CL0149
Cotton_A_05129_CDS 25 83 23 83 PF00046.29 Homeodomain Domain 3 57 57 57.6 8.3e-16 1 CL0123
Cotton_A_05129_CDS 164 372 163 373 PF01852.19 START Domain 2 208 209 163.0 6.2e-48 1 CL0209
Cotton_A_05456_CDS 44 132 18 142 PF00179.26 UQ_con Domain 25 111 140 49.3 3.7e-13 1 CL0208
Cotton_A_12079_CDS 26 135 22 135 PF00164.25 Ribosom_S12_S23 Family 4 114 114 167.5 6.7e-50 1 CL0021
Cotton_A_26068_CDS 40 291 40 291 PF13561.6 adh_short_C2 Domain 1 234 234 203.8 2.8e-60 1 CL0063
Cotton_A_03469_CDS 71 123 70 124 PF14416.6 PMR5N Domain 2 52 53 76.2 1.7e-21 1 No_clan
Cotton_A_03469_CDS 125 414 125 414 PF13839.6 PC-Esterase Family 1 283 283 309.3 3.1e-92 1 CL0264
Cotton_A_14510_CDS 199 461 199 462 PF00082.22 Peptidase_S8 Domain 1 298 298 131.6 3.4e-38 1 No_clan
Cotton_A_15913_CDS 75 589 75 589 PF10433.9 MMS1_N Domain 1 489 489 569.2 6.8e-171 1 No_clan
Cotton_A_15913_CDS 861 1180 860 1182 PF03178.15 CPSF_A Family 2 320 322 314.7 7.2e-94 1 CL0186
Cotton_A_02222_CDS 27 94 26 94 PF00690.26 Cation_ATPase_N Domain 2 69 69 65.1 3.3e-18 1 No_clan
Cotton_A_02222_CDS 147 361 146 361 PF00122.20 E1-E2_ATPase Family 2 181 181 168.0 1.5e-49 1 No_clan
Cotton_A_02222_CDS 445 547 445 547 PF13246.6 Cation_ATPase Family 1 91 91 55.3 5e-15 1 CL0137
Cotton_A_02222_CDS 621 743 506 743 PF00702.26 Hydrolase Domain 107 210 210 66.9 2.9e-18 1 CL0137
Cotton_A_02222_CDS 814 1039 813 1040 PF00689.21 Cation_ATPase_C Family 2 181 182 161.7 1.5e-47 1 No_clan
Cotton_A_13928_CDS 13 75 13 75 PF00462.24 Glutaredoxin Domain 1 60 60 39.3 5.7e-10 1 CL0172
Cotton_A_07046_CDS 100 180 100 184 PF16561.5 AMPK1_CBM Family 1 81 85 107.3 3.4e-31 1 CL0369
Cotton_A_07046_CDS 213 281 212 281 PF04739.15 AMPKBI Family 2 75 75 63.5 1.6e-17 1 No_clan
Cotton_A_09995_CDS 10 65 10 66 PF00412.22 LIM Domain 1 57 58 40.6 2.2e-10 1 CL0167
Cotton_A_09995_CDS 105 160 105 161 PF00412.22 LIM Domain 1 57 58 41.0 1.6e-10 1 CL0167
Cotton_A_17958_CDS 10 85 10 85 PF12609.8 DUF3774 Family 1 74 74 112.5 1.4e-32 1 No_clan
Cotton_A_25860_CDS 18 175 15 175 PF00230.20 MIP Family 4 173 227 122.3 2.4e-35 1 No_clan
Cotton_A_07147_CDS 103 212 86 299 PF14724.6 mit_SMPDase Family 76 179 765 28.6 3.7e-07 1 No_clan
Cotton_A_07147_CDS 389 534 385 562 PF14724.6 mit_SMPDase Family 366 491 765 24.7 5.3e-06 1 No_clan
Cotton_A_25060_CDS 129 172 128 172 PF13639.6 zf-RING_2 Domain 2 44 44 46.6 3.2e-12 1 CL0229
Cotton_A_32303_CDS 63 167 60 167 PF01477.23 PLAT Domain 4 117 117 52.7 5.7e-14 1 CL0321
Cotton_A_32303_CDS 181 854 180 854 PF00305.19 Lipoxygenase Domain 2 674 674 1010.6 0 1 No_clan
Cotton_A_22086_CDS 24 74 24 76 PF03106.15 WRKY Domain 1 53 59 72.8 1.9e-20 1 CL0274
Cotton_A_22086_CDS 153 209 153 209 PF03106.15 WRKY Domain 1 59 59 89.2 1.4e-25 1 CL0274
Cotton_A_38745_CDS 13 96 10 134 PF18052.1 Rx_N Domain 5 84 93 79.0 2.4e-22 1 No_clan
Cotton_A_38745_CDS 181 417 172 418 PF00931.22 NB-ARC Domain 10 251 252 161.1 2.7e-47 1 CL0023
Cotton_A_04912_CDS 6 100 5 104 PF00168.30 C2 Domain 2 99 103 84.8 4.2e-24 1 CL0154
Cotton_A_04352_CDS 77 140 77 141 PF01842.25 ACT Domain 1 66 67 43.1 2.6e-11 1 CL0070
Cotton_A_04352_CDS 156 228 156 229 PF10369.9 ALS_ss_C Family 1 73 74 94.6 3e-27 1 CL0070
Cotton_A_04352_CDS 318 380 318 380 PF13710.6 ACT_5 Domain 1 62 62 40.1 2.3e-10 1 CL0070
Cotton_A_04352_CDS 391 463 391 464 PF10369.9 ALS_ss_C Family 1 73 74 88.5 2.4e-25 1 CL0070
Cotton_A_07219_CDS 39 362 37 369 PF00743.19 FMO-like Family 6 342 532 109.2 1.8e-31 1 CL0063
Cotton_A_16793_CDS 127 411 127 411 PF00069.25 Pkinase Domain 1 264 264 227.6 1.7e-67 1 CL0016
Cotton_A_23482_CDS 12 51 12 59 PF00646.33 F-box Domain 1 40 48 25.8 6.7e-06 1 CL0271
Cotton_A_13279_CDS 96 444 96 449 PF01979.20 Amidohydro_1 Domain 1 291 344 51.5 9.5e-14 1 CL0034
Cotton_A_32251_CDS 35 149 34 174 PF04043.15 PMEI Domain 2 122 154 42.0 1.1e-10 1 No_clan
Cotton_A_07549_CDS 8 281 8 282 PF00732.19 GMC_oxred_N Domain 1 295 296 110.5 1e-31 1 CL0063
Cotton_A_07549_CDS 372 517 372 519 PF05199.13 GMC_oxred_C Domain 1 142 144 100.1 1.6e-28 1 No_clan
Cotton_A_07366_CDS 43 90 42 92 PF13920.6 zf-C3HC4_3 Domain 2 48 50 29.8 3.9e-07 1 CL0229
Cotton_A_07366_CDS 342 379 340 388 PF00569.17 ZZ Domain 3 37 45 33.2 3.3e-08 1 CL0006
Cotton_A_28295_CDS 5 182 1 200 PF00955.21 HCO3_cotransp Family 5 176 508 136.2 1.5e-39 1 CL0062
Cotton_A_28295_CDS 190 372 181 377 PF00955.21 HCO3_cotransp Family 234 411 508 87.5 8.8e-25 1 CL0062
Cotton_A_28295_CDS 453 543 448 544 PF00955.21 HCO3_cotransp Family 423 507 508 67.7 8.9e-19 1 CL0062
Cotton_A_14008_CDS 54 417 53 417 PF02535.22 Zip Family 2 333 333 248.3 1.2e-73 1 CL0184
Cotton_A_25793_CDS 21 134 20 136 PF07732.15 Cu-oxidase_3 Domain 2 117 119 132.8 5.7e-39 1 CL0026
Cotton_A_25793_CDS 147 283 146 284 PF00394.22 Cu-oxidase Domain 2 158 159 140.9 3.6e-41 1 CL0026
Cotton_A_25793_CDS 365 498 364 504 PF07731.14 Cu-oxidase_2 Domain 2 131 137 86.7 1.1e-24 1 CL0026
Cotton_A_11942_CDS 18 146 18 157 PF04857.20 CAF1 Family 1 126 319 40.5 1.8e-10 1 CL0219
Cotton_A_25109_CDS 153 206 153 209 PF00412.22 LIM Domain 1 55 58 32.7 6.3e-08 1 CL0167
Cotton_A_25109_CDS 302 509 302 509 PF12315.8 DA1-like Family 1 208 208 331.4 1.7e-99 1 CL0126
Cotton_A_19137_CDS 19 56 17 57 PF08263.12 LRRNT_2 Family 3 40 41 32.7 6.9e-08 1 No_clan
Cotton_A_19137_CDS 110 132 110 132 PF00560.33 LRR_1 Repeat 1 23 23 10.3 0.93 1 CL0022
Cotton_A_19137_CDS 158 218 158 218 PF13855.6 LRR_8 Repeat 2 61 61 29.3 5.3e-07 1 CL0022
Cotton_A_19137_CDS 256 277 255 277 PF00560.33 LRR_1 Repeat 2 23 23 10.0 1.2 1 CL0022
Cotton_A_19137_CDS 374 395 374 396 PF00560.33 LRR_1 Repeat 1 22 23 9.3 1.9 1 CL0022
Cotton_A_19137_CDS 455 476 454 476 PF00560.33 LRR_1 Repeat 2 23 23 9.8 1.4 1 CL0022
Cotton_A_19137_CDS 507 562 503 562 PF13855.6 LRR_8 Repeat 6 61 61 31.6 1e-07 1 CL0022
Cotton_A_19137_CDS 647 706 646 706 PF13855.6 LRR_8 Repeat 2 61 61 41.5 8.2e-11 1 CL0022
Cotton_A_19137_CDS 819 1088 816 1089 PF07714.17 Pkinase_Tyr Domain 4 258 259 147.9 3.3e-43 1 CL0016
Cotton_A_18636_CDS 8 422 4 425 PF02458.15 Transferase Family 5 430 434 266.1 4.6e-79 1 CL0149
Cotton_A_25506_CDS 183 240 159 240 PF13855.6 LRR_8 Repeat 2 61 61 30.9 1.7e-07 1 CL0022
Cotton_A_25506_CDS 343 380 342 382 PF00514.23 Arm Repeat 2 38 41 22.5 8.2e-05 1 CL0020
Cotton_A_25506_CDS 529 769 529 772 PF01734.22 Patatin Family 1 201 204 73.2 3.2e-20 1 CL0323
Cotton_A_37888_CDS 37 129 36 129 PF17800.1 NPL Domain 2 105 105 55.5 6.8e-15 1 CL0055
Cotton_A_37888_CDS 434 524 433 524 PF00254.28 FKBP_C Domain 2 94 94 110.0 5.5e-32 1 CL0487
Cotton_A_26230_CDS 121 251 119 252 PF03004.14 Transposase_24 Family 3 141 142 77.0 1.5e-21 1 No_clan
Cotton_A_34709_CDS 85 340 78 341 PF07819.13 PGAP1 Family 20 230 231 251.2 9.8e-75 1 CL0028
Cotton_A_28171_CDS 139 392 138 392 PF07714.17 Pkinase_Tyr Domain 2 259 259 228.5 7.9e-68 1 CL0016
Cotton_A_11962_CDS 16 124 14 125 PF02391.17 MoaE Family 4 112 113 136.6 3.9e-40 1 No_clan
Cotton_A_31708_CDS 36 216 23 216 PF14009.6 DUF4228 Family 16 179 179 62.9 4.9e-17 1 No_clan
Cotton_A_12230_CDS 29 496 28 497 PF00232.18 Glyco_hydro_1 Domain 2 451 453 531.8 1.1e-159 1 CL0058
Cotton_A_15758_CDS 31 111 30 112 PF14547.6 Hydrophob_seed Domain 2 84 85 52.1 5.8e-14 1 CL0482
Cotton_A_17440_CDS 71 268 68 269 PF01633.20 Choline_kinase Family 4 212 213 208.8 6.7e-62 1 CL0016
Cotton_A_04867_CDS 29 168 7 180 PF06784.11 UPF0240 Family 34 160 174 26.0 8.2e-06 1 No_clan
Cotton_A_00906_CDS 36 491 35 498 PF00067.22 p450 Domain 1 456 463 358.5 4.9e-107 1 No_clan
Cotton_A_28082_CDS 2 112 1 116 PF01699.24 Na_Ca_ex Family 33 147 151 60.8 1.4e-16 1 No_clan
Cotton_A_28082_CDS 312 462 311 464 PF01699.24 Na_Ca_ex Family 2 148 151 90.5 9.9e-26 1 No_clan
Cotton_A_28840_CDS 15 118 13 125 PF10167.9 BORCS8 Family 3 105 112 81.5 3.9e-23 1 No_clan
Cotton_A_24454_CDS 12 545 12 547 PF03321.13 GH3 Family 1 525 527 647.0 2.5e-194 1 CL0378
Cotton_A_08389_CDS 436 479 435 479 PF13639.6 zf-RING_2 Domain 2 44 44 46.8 2.6e-12 1 CL0229
Cotton_A_03409_CDS 115 538 115 547 PF00854.21 PTR2 Family 1 387 395 276.7 2.8e-82 1 CL0015
Cotton_A_01243_CDS 80 124 76 124 PF13855.6 LRR_8 Repeat 16 61 61 35.7 5.4e-09 1 CL0022
Cotton_A_01243_CDS 137 159 137 159 PF00560.33 LRR_1 Repeat 1 23 23 10.2 0.97 1 CL0022
Cotton_A_01243_CDS 184 243 178 244 PF13855.6 LRR_8 Repeat 1 60 61 29.1 6e-07 1 CL0022
Cotton_A_01243_CDS 282 297 282 302 PF13516.6 LRR_6 Repeat 3 18 24 9.9 0.84 1 CL0022
Cotton_A_01243_CDS 355 372 355 376 PF00560.33 LRR_1 Repeat 1 18 23 9.5 1.7 1 CL0022
Cotton_A_01243_CDS 376 391 374 396 PF13516.6 LRR_6 Repeat 3 18 24 11.5 0.25 1 CL0022
Cotton_A_01243_CDS 550 842 546 843 PF07714.17 Pkinase_Tyr Domain 5 258 259 113.9 7.3e-33 1 CL0016
Cotton_A_34987_CDS 117 194 117 196 PF04136.15 Sec34 Family 1 78 149 64.1 1.3e-17 1 No_clan
Cotton_A_25246_CDS 31 74 10 75 PF06404.12 PSK Family 44 89 90 58.4 1.1e-15 1 No_clan
Cotton_A_25636_CDS 33 208 33 209 PF04520.13 Senescence_reg Family 1 167 168 153.0 1.3e-44 1 No_clan
Cotton_A_13643_CDS 9 89 9 110 PF14226.6 DIOX_N Family 1 79 118 40.8 3.3e-10 1 CL0029
Cotton_A_13643_CDS 167 258 161 261 PF03171.20 2OG-FeII_Oxy Domain 6 98 101 63.0 2.9e-17 1 CL0029
Cotton_A_04211_CDS 4 68 2 91 PF08961.10 NRBF2 Domain 75 142 197 27.5 2.1e-06 1 No_clan
Cotton_A_20839_CDS 60 563 55 563 PF03169.15 OPT Family 148 616 616 448.0 5.9e-134 1 No_clan
Cotton_A_11857_CDS 16 92 15 98 PF07011.11 Elf4 Domain 2 78 83 117.6 1.7e-34 1 No_clan
Cotton_A_12448_CDS 29 381 28 382 PF00155.21 Aminotran_1_2 Domain 3 362 363 178.2 2.6e-52 1 CL0061
Cotton_A_15752_CDS 73 132 69 134 PF09011.10 HMG_box_2 Domain 7 71 73 28.9 1.2e-06 1 CL0114
Cotton_A_35707_CDS 13 193 12 201 PF00106.25 adh_short Domain 2 178 195 101.5 3.8e-29 1 CL0063
Cotton_A_00048_CDS 164 273 163 283 PF02893.20 GRAM Domain 2 101 114 62.1 4.1e-17 1 CL0266
Cotton_A_31594_CDS 24 89 24 89 PF04431.13 Pec_lyase_N Family 1 56 56 67.6 8.2e-19 1 No_clan
Cotton_A_31594_CDS 185 369 176 369 PF00544.19 Pec_lyase_C Domain 29 211 211 76.9 1.6e-21 1 CL0268
Cotton_A_14397_CDS 349 526 348 527 PF00270.29 DEAD Domain 2 175 176 151.3 2.2e-44 1 CL0023
Cotton_A_14397_CDS 572 646 564 653 PF00271.31 Helicase_C Family 9 80 111 27.4 3.3e-06 1 CL0023
Cotton_A_11348_CDS 130 230 129 230 PF00829.21 Ribosomal_L21p Family 2 101 101 113.9 3.5e-33 1 No_clan
Cotton_A_15761_CDS 1 105 1 105 PF04398.12 DUF538 Family 4 112 112 109.5 1.2e-31 1 No_clan
Cotton_A_10349_CDS 122 157 122 158 PF03638.15 TCR Domain 1 37 38 41.5 1.2e-10 1 No_clan
Cotton_A_10349_CDS 208 243 207 244 PF03638.15 TCR Domain 2 37 38 47.9 1.2e-12 1 No_clan
Cotton_A_22439_CDS 2 38 2 57 PF03105.19 SPX Domain 1 37 384 51.2 1.8e-13 1 No_clan
Cotton_A_22439_CDS 71 335 43 336 PF03105.19 SPX Domain 142 383 384 170.6 9.6e-50 1 No_clan
Cotton_A_22439_CDS 426 758 425 758 PF03124.14 EXS Family 2 331 331 282.4 5.1e-84 1 CL0182
Cotton_A_05465_CDS 124 189 122 190 PF13432.6 TPR_16 Family 6 67 68 15.9 0.016 1 CL0020
Cotton_A_05465_CDS 190 216 190 223 PF00515.28 TPR_1 Repeat 1 27 34 30.2 2.6e-07 1 CL0020
Cotton_A_05465_CDS 224 257 224 257 PF00515.28 TPR_1 Repeat 1 34 34 38.5 6e-10 1 CL0020
Cotton_A_05465_CDS 299 330 299 332 PF13181.6 TPR_8 Repeat 1 32 34 12.5 0.14 1 CL0020
Cotton_A_05465_CDS 333 366 333 366 PF00515.28 TPR_1 Repeat 1 34 34 36.2 3.1e-09 1 CL0020
Cotton_A_05465_CDS 369 396 367 397 PF13374.6 TPR_10 Repeat 4 31 42 17.4 0.0029 1 CL0020
Cotton_A_05465_CDS 401 433 401 434 PF00515.28 TPR_1 Repeat 1 33 34 36.5 2.6e-09 1 CL0020
Cotton_A_05465_CDS 487 636 486 639 PF13844.6 Glyco_transf_41 Family 2 149 471 86.5 1.3e-24 1 CL0113
Cotton_A_05465_CDS 653 844 650 844 PF13844.6 Glyco_transf_41 Family 284 471 471 99.0 2.1e-28 1 CL0113
Cotton_A_09279_CDS 27 84 26 85 PF04770.12 ZF-HD_dimer Family 2 54 55 78.8 2.7e-22 1 No_clan
Cotton_A_19643_CDS 70 304 59 304 PF07714.17 Pkinase_Tyr Domain 15 259 259 79.1 3.2e-22 1 CL0016
Cotton_A_26739_CDS 126 214 126 214 PF01250.17 Ribosomal_S6 Domain 1 90 90 84.7 4e-24 1 No_clan
Cotton_A_07626_CDS 8 48 1 58 PF00004.29 AAA Domain 76 117 132 22.9 8.7e-05 1 CL0023
Cotton_A_19968_CDS 101 242 98 253 PF01789.16 PsbP Domain 4 128 156 95.1 4.5e-27 1 CL0619
Cotton_A_00113_CDS 33 321 33 321 PF01459.22 Porin_3 Family 1 270 270 264.0 1.5e-78 1 CL0193
Cotton_A_19467_CDS 13 58 13 58 PF03107.16 C1_2 Domain 1 47 47 43.3 3.4e-11 1 CL0006
Cotton_A_19467_CDS 67 115 67 115 PF03107.16 C1_2 Domain 1 47 47 50.3 2.2e-13 1 CL0006
Cotton_A_19467_CDS 125 172 122 172 PF03107.16 C1_2 Domain 2 47 47 29.8 5.4e-07 1 CL0006
Cotton_A_35442_CDS 62 220 61 220 PF01554.18 MatE Family 3 161 161 95.7 2.2e-27 1 CL0222
Cotton_A_35442_CDS 282 442 281 444 PF01554.18 MatE Family 2 159 161 90.9 6.7e-26 1 CL0222
Cotton_A_21292_CDS 151 335 145 351 PF00083.24 Sugar_tr Family 157 344 452 103.2 1.5e-29 1 CL0015
Cotton_A_25223_CDS 4 267 1 267 PF03151.16 TPT Family 39 290 290 128.9 2.4e-37 1 CL0184
Cotton_A_13700_CDS 80 141 79 141 PF13855.6 LRR_8 Repeat 2 61 61 34.9 9.7e-09 1 CL0022
Cotton_A_29310_CDS 78 100 78 100 PF00096.26 zf-C2H2 Domain 1 23 23 17.2 0.0051 1 CL0361
Cotton_A_05318_CDS 370 631 370 633 PF12697.7 Abhydrolase_6 Domain 1 218 220 66.9 3.8e-18 1 CL0028
Cotton_A_29593_CDS 108 205 106 205 PF03171.20 2OG-FeII_Oxy Domain 3 101 101 93.9 6.9e-27 1 CL0029
Cotton_A_32608_CDS 4 125 4 179 PF06075.12 DUF936 Family 1 128 692 211.0 4.6e-62 1 No_clan
Cotton_A_32608_CDS 254 512 210 526 PF06075.12 DUF936 Family 341 633 692 85.3 4.8e-24 1 No_clan
Cotton_A_11648_CDS 58 153 3 154 PF10157.9 BORCS6 Family 56 151 152 32.3 9.9e-08 1 No_clan
Cotton_A_03727_CDS 2 62 1 63 PF01423.22 LSM Domain 5 66 67 60.3 1.1e-16 1 CL0527
Cotton_A_27899_CDS 72 117 69 119 PF00571.28 CBS Domain 12 55 57 31.7 1.6e-07 1 No_clan
Cotton_A_27899_CDS 129 185 129 186 PF00571.28 CBS Domain 1 56 57 50.0 2.9e-13 1 No_clan
Cotton_A_17581_CDS 21 110 18 111 PF10537.9 WAC_Acf1_DNA_bd Domain 9 100 101 77.2 1.2e-21 1 No_clan
Cotton_A_17581_CDS 299 356 299 356 PF02791.17 DDT Family 1 60 60 63.7 1.4e-17 1 No_clan
Cotton_A_17581_CDS 584 650 584 651 PF15613.6 WSD Family 1 98 99 73.2 1.8e-20 1 No_clan
Cotton_A_02986_CDS 117 454 116 455 PF03016.15 Exostosin Family 2 299 300 306.8 1.5e-91 1 No_clan
Cotton_A_05770_CDS 19 62 17 64 PF00646.33 F-box Domain 3 46 48 30.3 2.7e-07 1 CL0271
Cotton_A_05770_CDS 109 218 109 266 PF14299.6 PP2 Family 1 98 146 124.9 2.4e-36 1 No_clan
Cotton_A_33469_CDS 9 51 9 51 PF13445.6 zf-RING_UBOX Domain 1 39 39 32.4 7e-08 1 CL0229
Cotton_A_33469_CDS 504 534 500 534 PF00400.32 WD40 Repeat 7 38 38 14.7 0.043 1 CL0186
Cotton_A_33469_CDS 631 665 629 665 PF00400.32 WD40 Repeat 3 38 38 22.4 0.00016 1 CL0186
Cotton_A_33469_CDS 720 744 713 744 PF00400.32 WD40 Repeat 10 35 38 14.2 0.063 1 CL0186
Cotton_A_12872_CDS 57 187 57 187 PF03947.18 Ribosomal_L2_C Domain 1 126 126 174.8 7.6e-52 1 CL0107
Cotton_A_20410_CDS 63 144 61 144 PF02298.17 Cu_bind_like Domain 3 84 84 66.1 2.1e-18 1 CL0026
Cotton_A_09162_CDS 214 273 213 274 PF13812.6 PPR_3 Repeat 2 61 63 25.8 8.1e-06 1 CL0020
Cotton_A_09162_CDS 289 343 283 345 PF13812.6 PPR_3 Repeat 7 61 63 40.6 2e-10 1 CL0020
Cotton_A_09162_CDS 369 397 368 398 PF01535.20 PPR Family 2 30 31 15.4 0.016 1 CL0020
Cotton_A_09162_CDS 403 449 400 450 PF13041.6 PPR_2 Repeat 4 49 50 39.8 3.9e-10 1 CL0020
Cotton_A_37020_CDS 108 358 92 360 PF00933.21 Glyco_hydro_3 Domain 80 317 319 112.3 2.9e-32 1 CL0058
Cotton_A_37020_CDS 401 630 401 630 PF01915.22 Glyco_hydro_3_C Domain 1 204 204 185.2 1.4e-54 1 No_clan
Cotton_A_37020_CDS 692 759 691 761 PF14310.6 Fn3-like Family 2 69 71 45.7 5.2e-12 1 CL0159
Cotton_A_06309_CDS 232 268 230 272 PF08387.10 FBD Family 6 42 46 26.0 6.1e-06 1 No_clan
Cotton_A_00248_CDS 6 65 6 66 PF03931.15 Skp1_POZ Domain 1 62 63 82.2 2.1e-23 1 CL0033
Cotton_A_00248_CDS 104 151 104 151 PF01466.19 Skp1 Domain 1 48 48 99.4 8.5e-29 1 No_clan
Cotton_A_39311_CDS 9 54 8 56 PF00646.33 F-box Domain 2 46 48 19.9 0.0005 1 CL0271
Cotton_A_24594_CDS 25 64 24 64 PF08263.12 LRRNT_2 Family 2 41 41 38.4 1.2e-09 1 No_clan
Cotton_A_24594_CDS 120 175 120 175 PF13855.6 LRR_8 Repeat 6 61 61 29.5 4.7e-07 1 CL0022
Cotton_A_13421_CDS 1 77 1 119 PF14009.6 DUF4228 Family 1 82 179 64.3 1.9e-17 1 No_clan
Cotton_A_25817_CDS 82 140 81 141 PF00170.21 bZIP_1 Family 5 63 64 52.0 5.4e-14 1 CL0018
Cotton_A_40915_CDS 81 105 80 105 PF12108.8 SF3a60_bindingd Domain 2 26 27 43.4 2.1e-11 1 No_clan
Cotton_A_40915_CDS 127 206 127 206 PF16837.5 SF3A3 Domain 1 79 79 84.6 4.9e-24 1 No_clan
Cotton_A_40915_CDS 245 304 245 304 PF13297.6 Telomere_Sde2_2 Domain 1 60 60 90.6 3.5e-26 1 No_clan
Cotton_A_40915_CDS 330 508 330 508 PF11931.8 DUF3449 Family 1 184 184 261.5 3.8e-78 1 CL0361
Cotton_A_26975_CDS 11 70 11 70 PF06972.11 DUF1296 Family 1 60 60 120.1 3.2e-35 1 CL0214
Cotton_A_16585_CDS 1 69 1 72 PF01373.17 Glyco_hydro_14 Domain 61 123 402 73.7 1.4e-20 1 CL0058
Cotton_A_17239_CDS 18 864 17 864 PF11145.8 DUF2921 Family 2 894 894 735.7 6.6e-221 1 No_clan
Cotton_A_18943_CDS 111 159 109 160 PF00847.20 AP2 Domain 3 53 54 51.7 7.7e-14 1 CL0081
Cotton_A_14117_CDS 124 204 100 206 PF12796.7 Ank_2 Repeat 17 74 83 41.7 1.3e-10 1 CL0465
Cotton_A_14117_CDS 247 320 239 326 PF12796.7 Ank_2 Repeat 16 77 83 31.4 2.1e-07 1 CL0465
Cotton_A_14117_CDS 463 582 462 582 PF13962.6 PGG Domain 2 116 116 84.8 3.7e-24 1 No_clan
Cotton_A_35498_CDS 10 36 10 36 PF08513.11 LisH Domain 1 27 27 32.1 7.4e-08 1 CL0561
Cotton_A_06926_CDS 97 165 97 166 PF00076.22 RRM_1 Domain 1 68 70 51.4 7.2e-14 1 CL0221
Cotton_A_06926_CDS 190 260 190 261 PF00076.22 RRM_1 Domain 1 69 70 52.4 3.3e-14 1 CL0221
Cotton_A_06926_CDS 301 365 301 365 PF00076.22 RRM_1 Domain 1 70 70 67.3 7.8e-19 1 CL0221
Cotton_A_01054_CDS 254 281 253 282 PF13181.6 TPR_8 Repeat 2 29 34 12.4 0.15 1 CL0020
Cotton_A_01054_CDS 603 685 603 685 PF00226.31 DnaJ Domain 1 63 63 64.9 5.5e-18 1 CL0392
Cotton_A_15493_CDS 66 161 66 162 PF03101.15 FAR1 Domain 1 89 90 103.6 7e-30 1 CL0274
Cotton_A_15493_CDS 282 375 282 376 PF10551.9 MULE Domain 1 95 96 105.4 1.6e-30 1 CL0219
Cotton_A_15493_CDS 575 599 569 600 PF04434.17 SWIM Domain 15 39 40 37.1 1.8e-09 1 No_clan
Cotton_A_11720_CDS 3 236 1 236 PF06217.12 GAGA_bind Domain 52 295 295 327.6 1.4e-97 1 No_clan
Cotton_A_25446_CDS 102 183 87 189 PF13364.6 BetaGal_dom4_5 Domain 26 107 114 27.7 3.3e-06 1 CL0202
Cotton_A_19848_CDS 13 138 12 138 PF02365.15 NAM Family 2 126 126 129.2 1.6e-37 1 No_clan
Cotton_A_21535_CDS 127 371 97 371 PF05705.14 DUF829 Domain 5 241 241 114.9 5.3e-33 1 CL0028
Cotton_A_06973_CDS 77 355 73 355 PF07714.17 Pkinase_Tyr Domain 5 259 259 154.0 4.5e-45 1 CL0016
Cotton_A_29468_CDS 328 385 327 385 PF03106.15 WRKY Domain 2 59 59 84.9 3.2e-24 1 CL0274
Cotton_A_12261_CDS 55 179 55 179 PF00782.20 DSPc Domain 1 133 133 88.0 4.6e-25 1 CL0031
Cotton_A_04460_CDS 77 157 75 157 PF03330.18 DPBB_1 Domain 3 83 83 60.8 1.1e-16 1 CL0199
Cotton_A_04460_CDS 169 250 169 250 PF01357.21 Pollen_allerg_1 Domain 1 80 80 88.2 2.7e-25 1 CL0159
Cotton_A_01402_CDS 66 239 66 239 PF11744.8 ALMT Family 1 175 469 276.9 3.1e-82 1 CL0307
Cotton_A_33597_CDS 45 271 39 377 PF01425.21 Amidase Family 73 293 451 155.8 1.8e-45 1 No_clan
Cotton_A_07584_CDS 37 531 37 533 PF00118.24 Cpn60_TCP1 Family 1 488 491 518.3 1.8e-155 1 No_clan
Cotton_A_01776_CDS 74 186 72 187 PF03479.15 DUF296 Domain 3 106 107 76.6 1.7e-21 1 CL0615
Cotton_A_06243_CDS 207 414 207 415 PF02786.17 CPSase_L_D2 Domain 1 210 211 242.4 3.4e-72 1 CL0179
Cotton_A_06243_CDS 507 626 505 626 PF02787.19 CPSase_L_D3 Domain 3 122 122 140.0 4.6e-41 1 CL0123
Cotton_A_06243_CDS 765 967 765 970 PF02786.17 CPSase_L_D2 Domain 1 208 211 131.5 2.9e-38 1 CL0179
Cotton_A_06243_CDS 1051 1136 1049 1136 PF02142.22 MGS Domain 3 95 95 66.8 1.5e-18 1 No_clan
Cotton_A_08801_CDS 84 456 84 456 PF03514.14 GRAS Family 1 374 374 285.6 5.3e-85 1 CL0063
Cotton_A_14410_CDS 161 573 149 580 PF12234.8 Rav1p_C Family 177 554 638 234.9 1.7e-69 1 No_clan
Cotton_A_14410_CDS 1609 1640 1605 1640 PF00400.32 WD40 Repeat 8 38 38 20.8 0.00051 1 CL0186
Cotton_A_03543_CDS 42 596 42 600 PF02990.16 EMP70 Family 1 515 519 622.4 6.1e-187 1 No_clan
Cotton_A_30639_CDS 55 82 55 82 PF01535.20 PPR Family 4 31 31 13.3 0.073 1 CL0020
Cotton_A_30639_CDS 83 113 83 113 PF01535.20 PPR Family 1 31 31 18.3 0.0019 1 CL0020
Cotton_A_30639_CDS 142 169 141 171 PF12854.7 PPR_1 Repeat 5 32 34 26.8 3e-06 1 CL0020
Cotton_A_30639_CDS 174 220 173 222 PF13041.6 PPR_2 Repeat 2 48 50 34.0 2.5e-08 1 CL0020
Cotton_A_30639_CDS 276 322 275 324 PF13041.6 PPR_2 Repeat 2 48 50 38.6 9.2e-10 1 CL0020
Cotton_A_30639_CDS 351 375 349 377 PF01535.20 PPR Family 3 27 31 10.4 0.63 1 CL0020
Cotton_A_05504_CDS 1 186 1 198 PF00067.22 p450 Domain 270 451 463 204.1 3.3e-60 1 No_clan
Cotton_A_11937_CDS 48 192 46 195 PF04535.12 DUF588 Domain 3 147 150 140.0 5e-41 1 CL0396
Cotton_A_07627_CDS 7 67 7 67 PF13921.6 Myb_DNA-bind_6 Domain 1 60 60 61.5 6.5e-17 1 CL0123
Cotton_A_16025_CDS 23 169 22 171 PF04043.15 PMEI Domain 2 151 154 94.8 6.4e-27 1 No_clan
Cotton_A_09418_CDS 116 149 116 149 PF06200.14 tify Domain 1 34 34 69.6 9.6e-20 1 No_clan
Cotton_A_09418_CDS 211 235 211 236 PF09425.10 CCT_2 Motif 1 25 26 54.3 8.6e-15 1 CL0281
Cotton_A_25551_CDS 98 440 92 441 PF02535.22 Zip Family 30 332 333 161.2 3.7e-47 1 CL0184
Cotton_A_05300_CDS 74 512 5 519 PF07779.12 Cas1_AcylT Domain 61 468 474 336.0 4e-100 1 CL0316
Cotton_A_06092_CDS 48 91 44 120 PF07491.11 PPI_Ypi1 Family 14 57 60 65.0 4.1e-18 1 No_clan
Cotton_A_17841_CDS 8 118 6 118 PF02519.14 Auxin_inducible Family 3 90 90 92.7 1.2e-26 1 No_clan
Cotton_A_02849_CDS 43 317 41 317 PF04674.12 Phi_1 Family 3 276 276 280.7 1.1e-83 1 No_clan
Cotton_A_36631_CDS 62 222 62 222 PF01554.18 MatE Family 1 161 161 112.5 1.5e-32 1 CL0222
Cotton_A_36631_CDS 283 443 282 445 PF01554.18 MatE Family 2 159 161 111.8 2.4e-32 1 CL0222
Cotton_A_34776_CDS 105 436 104 436 PF07992.14 Pyr_redox_2 Domain 2 294 294 194.6 2.1e-57 1 CL0063
Cotton_A_00794_CDS 57 113 55 115 PF07939.11 DUF1685 Family 3 58 60 81.2 3.3e-23 1 No_clan
Cotton_A_17752_CDS 36 196 31 207 PF06017.13 Myosin_TH1 Family 8 174 187 125.9 1.5e-36 1 CL0266
Cotton_A_34712_CDS 66 113 65 114 PF13041.6 PPR_2 Repeat 2 49 50 38.6 9.3e-10 1 CL0020
Cotton_A_34712_CDS 141 164 139 165 PF01535.20 PPR Family 4 27 31 16.3 0.0085 1 CL0020
Cotton_A_34712_CDS 270 313 267 316 PF13041.6 PPR_2 Repeat 4 47 50 32.8 6e-08 1 CL0020
Cotton_A_34712_CDS 369 412 368 416 PF13041.6 PPR_2 Repeat 2 45 50 54.9 7.3e-15 1 CL0020
Cotton_A_34712_CDS 469 517 469 518 PF13041.6 PPR_2 Repeat 1 49 50 45.8 5.2e-12 1 CL0020
Cotton_A_21681_CDS 73 104 73 104 PF00467.29 KOW Family 1 32 32 33.0 3.8e-08 1 CL0107
Cotton_A_21681_CDS 106 169 106 170 PF17136.4 ribosomal_L24 Family 1 64 65 72.3 3.2e-20 1 No_clan
Cotton_A_35444_CDS 27 70 26 71 PF00401.20 ATP-synt_DE Domain 2 46 47 34.6 1.7e-08 1 No_clan
Cotton_A_10622_CDS 21 180 21 185 PF00875.18 DNA_photolyase Domain 1 160 164 138.0 2.8e-40 1 CL0039
Cotton_A_10622_CDS 300 389 300 399 PF03441.14 FAD_binding_7 Domain 1 91 202 95.7 2.4e-27 1 No_clan
Cotton_A_19433_CDS 1 142 1 142 PF04601.13 DUF569 Domain 1 142 142 223.2 8.6e-67 1 CL0066
Cotton_A_33568_CDS 181 208 181 213 PF01476.20 LysM Domain 1 28 44 21.9 0.00014 1 CL0187
Cotton_A_33568_CDS 362 632 361 634 PF00069.25 Pkinase Domain 13 260 264 112.8 1.8e-32 1 CL0016
Cotton_A_27431_CDS 39 221 38 222 PF00722.21 Glyco_hydro_16 Domain 2 176 177 184.5 1.2e-54 1 CL0004
Cotton_A_27431_CDS 256 292 246 292 PF06955.12 XET_C Family 10 47 47 50.7 1.2e-13 1 CL0004
Cotton_A_36369_CDS 736 963 645 964 PF01513.21 NAD_kinase Family 66 291 292 200.6 3e-59 1 CL0240
Cotton_A_16099_CDS 99 558 84 558 PF00501.28 AMP-binding Family 15 423 423 353.2 1.6e-105 1 CL0378
Cotton_A_23733_CDS 36 325 36 326 PF04227.12 Indigoidine_A Family 1 290 291 447.6 1.9e-134 1 No_clan
Cotton_A_10549_CDS 15 74 13 74 PF00046.29 Homeodomain Domain 3 57 57 64.8 4.5e-18 1 CL0123
Cotton_A_11744_CDS 33 929 30 930 PF04147.12 Nop14 Family 4 874 875 795.0 1e-238 1 No_clan
Cotton_A_09689_CDS 28 152 28 154 PF00237.19 Ribosomal_L22 Domain 1 92 103 118.1 1.8e-34 1 No_clan
Cotton_A_09689_CDS 153 288 153 288 PF00237.19 Ribosomal_L22 Domain 1 103 103 142.2 5.4e-42 1 No_clan
Cotton_A_03191_CDS 416 479 416 479 PF08590.10 DUF1771 Domain 1 64 64 44.5 1.5e-11 1 No_clan
Cotton_A_24765_CDS 105 163 104 164 PF13855.6 LRR_8 Repeat 2 60 61 32.6 5.1e-08 1 CL0022
Cotton_A_24765_CDS 348 581 345 632 PF00069.25 Pkinase Domain 4 221 264 147.9 3.5e-43 1 CL0016
Cotton_A_02302_CDS 129 183 129 185 PF04844.13 Ovate Family 1 55 58 82.6 1.4e-23 1 No_clan
Cotton_A_03303_CDS 92 226 91 230 PF03004.14 Transposase_24 Family 2 140 142 70.4 1.6e-19 1 No_clan
Cotton_A_05617_CDS 13 44 12 44 PF14364.6 DUF4408 Family 2 33 33 31.6 9.8e-08 1 No_clan
Cotton_A_05617_CDS 272 299 272 301 PF05553.11 DUF761 Family 1 28 36 52.2 3e-14 1 No_clan
Cotton_A_40437_CDS 41 90 41 90 PF10533.9 Plant_zn_clust Domain 1 49 49 67.3 8.5e-19 1 No_clan
Cotton_A_40437_CDS 94 150 93 151 PF03106.15 WRKY Domain 2 58 59 93.7 5.6e-27 1 CL0274
Cotton_A_36492_CDS 54 553 21 605 PF03999.12 MAP65_ASE1 Family 17 462 598 294.9 1.3e-87 1 No_clan
Cotton_A_31066_CDS 18 289 17 289 PF06454.11 DUF1084 Family 2 273 273 480.1 1.8e-144 1 No_clan
Cotton_A_29977_CDS 35 310 35 314 PF00664.23 ABC_membrane Family 1 270 274 204.0 3.4e-60 1 CL0241
Cotton_A_29977_CDS 378 528 378 528 PF00005.27 ABC_tran Domain 1 137 137 122.0 2.5e-35 1 CL0023
Cotton_A_33879_CDS 13 75 13 75 PF00462.24 Glutaredoxin Domain 1 60 60 43.6 2.5e-11 1 CL0172
Cotton_A_38092_CDS 198 388 198 389 PF03000.14 NPH3 Family 1 221 258 121.5 4.6e-35 1 No_clan
Cotton_A_32553_CDS 187 219 181 219 PF01476.20 LysM Domain 7 37 44 16.6 0.0062 1 CL0187
Cotton_A_32553_CDS 350 588 339 590 PF00069.25 Pkinase Domain 25 259 264 137.5 5.2e-40 1 CL0016
Cotton_A_30767_CDS 22 94 7 96 PF14368.6 LTP_2 Family 13 92 97 35.0 1.1e-08 1 CL0482
Cotton_A_33548_CDS 81 184 81 184 PF03168.13 LEA_2 Domain 1 101 101 36.3 6.3e-09 1 CL0159
Cotton_A_34001_CDS 47 62 46 63 PF13516.6 LRR_6 Repeat 2 17 24 10.5 0.53 1 CL0022
Cotton_A_34001_CDS 120 163 106 165 PF13855.6 LRR_8 Repeat 16 59 61 27.9 1.5e-06 1 CL0022
Cotton_A_34001_CDS 338 395 337 395 PF13855.6 LRR_8 Repeat 4 61 61 27.9 1.5e-06 1 CL0022
Cotton_A_22417_CDS 2 65 2 66 PF08156.13 NOP5NT Domain 1 64 65 68.8 4e-19 1 No_clan
Cotton_A_22417_CDS 166 394 166 395 PF01798.18 Nop Family 1 229 230 284.8 4.5e-85 1 No_clan
Cotton_A_38051_CDS 35 161 35 172 PF00067.22 p450 Domain 1 132 463 24.0 1.4e-05 1 No_clan
Cotton_A_17606_CDS 822 864 820 867 PF13920.6 zf-C3HC4_3 Domain 3 45 50 38.0 1.1e-09 1 CL0229
Cotton_A_18985_CDS 8 101 8 125 PF18052.1 Rx_N Domain 1 89 93 78.7 3.1e-22 1 No_clan
Cotton_A_01802_CDS 1 29 1 29 PF08100.11 Dimerisation Domain 23 51 51 29.1 7.2e-07 1 CL0123
Cotton_A_01802_CDS 84 289 84 289 PF00891.18 Methyltransf_2 Domain 1 210 210 243.7 1.1e-72 1 CL0063
Cotton_A_12913_CDS 7 47 4 55 PF05340.12 DUF740 Family 1 40 609 31.1 1e-07 1 No_clan
Cotton_A_12913_CDS 53 102 46 117 PF05340.12 DUF740 Family 82 130 609 41.0 1.1e-10 1 No_clan
Cotton_A_12913_CDS 118 413 104 423 PF05340.12 DUF740 Family 191 538 609 203.3 7.8e-60 1 No_clan
Cotton_A_12913_CDS 429 541 421 541 PF05340.12 DUF740 Family 499 609 609 62.1 4.3e-17 1 No_clan
Cotton_A_36446_CDS 169 307 169 307 PF16486.5 ArgoN Domain 1 138 138 113.4 1.2e-32 1 No_clan
Cotton_A_36446_CDS 318 367 317 367 PF08699.10 ArgoL1 Domain 2 52 52 69.9 1.1e-19 1 No_clan
Cotton_A_36446_CDS 385 495 373 499 PF02170.22 PAZ Domain 12 133 137 87.1 9e-25 1 CL0638
Cotton_A_36446_CDS 509 555 508 555 PF16488.5 ArgoL2 Family 2 47 47 30.1 4.4e-07 1 No_clan
Cotton_A_36446_CDS 566 643 565 644 PF16487.5 ArgoMid Domain 2 83 84 36.7 3.7e-09 1 No_clan
Cotton_A_36446_CDS 655 970 654 971 PF02171.17 Piwi Family 2 301 302 352.1 2.5e-105 1 CL0219
Cotton_A_09379_CDS 12 68 12 69 PF03398.14 Ist1 Family 1 57 164 54.1 1.7e-14 1 No_clan
Cotton_A_09379_CDS 69 154 67 154 PF03398.14 Ist1 Family 80 164 164 75.5 4.4e-21 1 No_clan
Cotton_A_12869_CDS 4 257 4 258 PF00069.25 Pkinase Domain 1 263 264 216.9 3.1e-64 1 CL0016
Cotton_A_28559_CDS 121 170 120 182 PF05180.12 zf-DNL Domain 2 51 64 56.4 2.1e-15 1 No_clan
Cotton_A_29686_CDS 80 105 80 106 PF13912.6 zf-C2H2_6 Domain 1 26 27 40.3 2.2e-10 1 CL0361
Cotton_A_29686_CDS 154 179 154 180 PF13912.6 zf-C2H2_6 Domain 1 26 27 46.8 1.9e-12 1 CL0361
Cotton_A_15312_CDS 1 101 1 101 PF01157.18 Ribosomal_L21e Family 1 101 101 156.8 1.1e-46 1 CL0107
Cotton_A_05427_CDS 19 75 18 76 PF02701.15 zf-Dof Family 2 58 59 113.4 3.8e-33 1 No_clan
Cotton_A_07665_CDS 202 270 202 272 PF00076.22 RRM_1 Domain 1 68 70 67.1 8.8e-19 1 CL0221
Cotton_A_07665_CDS 282 348 282 350 PF00076.22 RRM_1 Domain 1 63 70 34.0 1.8e-08 1 CL0221
Cotton_A_07665_CDS 379 445 379 449 PF00076.22 RRM_1 Domain 1 66 70 45.2 6.3e-12 1 CL0221
Cotton_A_01940_CDS 116 207 114 209 PF01248.26 Ribosomal_L7Ae Domain 3 93 95 88.3 2.1e-25 1 CL0101
Cotton_A_16741_CDS 29 68 28 68 PF08263.12 LRRNT_2 Family 2 41 41 31.4 1.7e-07 1 No_clan
Cotton_A_16741_CDS 668 953 666 955 PF00069.25 Pkinase Domain 3 260 264 151.5 2.7e-44 1 CL0016
Cotton_A_03789_CDS 81 150 80 152 PF04564.15 U-box Domain 2 71 73 69.4 2.1e-19 1 CL0229
Cotton_A_39242_CDS 11 53 10 122 PF00162.19 PGK Domain 2 44 378 47.2 1.5e-12 1 No_clan
Cotton_A_07955_CDS 52 442 52 443 PF13968.6 DUF4220 Family 1 347 347 308.5 7e-92 1 No_clan
Cotton_A_07955_CDS 756 805 752 805 PF04578.13 DUF594 Family 6 55 55 79.4 1e-22 1 No_clan
Cotton_A_24440_CDS 78 215 78 216 PF01565.23 FAD_binding_4 Domain 1 137 139 94.8 3.6e-27 1 CL0077
Cotton_A_24440_CDS 471 529 471 529 PF08031.12 BBE Domain 1 46 46 64.1 8.8e-18 1 CL0277
Cotton_A_34094_CDS 17 100 9 101 PF02362.21 B3 Family 10 100 101 49.3 3.5e-13 1 CL0405
Cotton_A_34094_CDS 332 430 332 432 PF02362.21 B3 Family 1 99 101 55.7 3.6e-15 1 CL0405
Cotton_A_34094_CDS 493 593 493 594 PF02362.21 B3 Family 1 100 101 61.2 6.8e-17 1 CL0405
Cotton_A_05510_CDS 58 102 56 103 PF00249.31 Myb_DNA-binding Domain 3 45 46 44.0 1.8e-11 1 CL0123
Cotton_A_01089_CDS 76 157 76 171 PF01453.24 B_lectin Domain 1 89 105 37.2 3.5e-09 1 No_clan
Cotton_A_01089_CDS 516 784 514 786 PF00069.25 Pkinase Domain 3 260 264 162.4 1.3e-47 1 CL0016
Cotton_A_41283_CDS 29 142 29 154 PF01477.23 PLAT Domain 1 106 117 50.9 2.1e-13 1 CL0321
Cotton_A_34873_CDS 7 68 7 74 PF00076.22 RRM_1 Domain 1 61 70 59.3 2.3e-16 1 CL0221
Cotton_A_34873_CDS 107 173 107 176 PF00076.22 RRM_1 Domain 1 67 70 58.6 4e-16 1 CL0221
Cotton_A_00876_CDS 179 238 179 238 PF00462.24 Glutaredoxin Domain 1 60 60 49.3 4.2e-13 1 CL0172
Cotton_A_00876_CDS 298 365 297 365 PF00610.21 DEP Domain 2 72 72 45.6 5.4e-12 1 CL0123
Cotton_A_00876_CDS 447 571 444 572 PF04784.14 DUF547 Family 4 122 123 106.5 8.5e-31 1 No_clan
Cotton_A_02891_CDS 29 116 29 132 PF14226.6 DIOX_N Family 1 98 118 54.1 2.4e-14 1 CL0029
Cotton_A_02891_CDS 179 281 178 283 PF03171.20 2OG-FeII_Oxy Domain 2 99 101 91.8 3.1e-26 1 CL0029
Cotton_A_27079_CDS 123 145 123 145 PF00560.33 LRR_1 Repeat 1 23 23 11.0 0.55 1 CL0022
Cotton_A_27079_CDS 171 230 170 230 PF13855.6 LRR_8 Repeat 2 61 61 29.3 5.5e-07 1 CL0022
Cotton_A_03443_CDS 46 152 45 153 PF03227.16 GILT Family 2 105 106 100.3 6.5e-29 1 CL0172
Cotton_A_09398_CDS 1 130 1 131 PF00235.19 Profilin Domain 1 126 127 150.7 2.4e-44 1 CL0431
Cotton_A_09482_CDS 35 209 16 209 PF14009.6 DUF4228 Family 15 179 179 108.5 4.9e-31 1 No_clan
Cotton_A_36846_CDS 9 192 8 198 PF00106.25 adh_short Domain 2 189 195 168.5 1.1e-49 1 CL0063
Cotton_A_25653_CDS 28 501 26 503 PF00232.18 Glyco_hydro_1 Domain 3 451 453 504.3 2.3e-151 1 CL0058
Cotton_A_25653_CDS 516 988 513 990 PF00232.18 Glyco_hydro_1 Domain 4 451 453 516.8 3.6e-155 1 CL0058
Cotton_A_24292_CDS 1 145 1 145 PF14009.6 DUF4228 Family 1 179 179 121.1 6.7e-35 1 No_clan
Cotton_A_27972_CDS 58 231 57 231 PF00213.18 OSCP Family 2 172 172 150.0 6.8e-44 1 CL0255
Cotton_A_23187_CDS 209 365 205 370 PF00009.27 GTP_EFTU Domain 6 189 194 108.0 4.3e-31 1 CL0023
Cotton_A_23187_CDS 500 595 490 596 PF11987.8 IF-2 Domain 12 104 105 99.8 8.3e-29 1 No_clan
Cotton_A_20712_CDS 21 112 18 112 PF03732.17 Retrotrans_gag Family 4 96 96 55.7 4.5e-15 1 CL0523
Cotton_A_11326_CDS 102 313 101 313 PF01823.19 MACPF Domain 2 209 209 112.6 2.7e-32 1 CL0293
Cotton_A_01254_CDS 378 663 378 663 PF03009.17 GDPD Family 1 259 259 103.4 1.6e-29 1 CL0384
Cotton_A_02365_CDS 10 136 10 137 PF02365.15 NAM Family 1 125 126 131.1 4.3e-38 1 No_clan
Cotton_A_01020_CDS 6 79 4 79 PF02798.20 GST_N Domain 3 76 76 52.6 4.3e-14 1 CL0172
Cotton_A_07633_CDS 63 253 62 260 PF00300.22 His_Phos_1 Domain 2 176 194 51.1 1.3e-13 1 CL0071
Cotton_A_23484_CDS 7 76 1 76 PF15811.5 SVIP Family 4 77 77 47.5 1.8e-12 1 No_clan
Cotton_A_12686_CDS 186 291 179 292 PF03479.15 DUF296 Domain 11 106 107 85.5 2.8e-24 1 CL0615
Cotton_A_27420_CDS 25 65 9 65 PF14389.6 Lzipper-MIP1 Family 44 84 84 32.3 9.3e-08 1 No_clan
Cotton_A_27420_CDS 335 467 334 467 PF04784.14 DUF547 Family 2 123 123 126.7 4.9e-37 1 No_clan
Cotton_A_25651_CDS 34 496 34 503 PF00067.22 p450 Domain 1 456 463 320.5 1.7e-95 1 No_clan
Cotton_A_06408_CDS 56 199 55 199 PF03018.14 Dirigent Family 2 148 148 185.6 4.2e-55 1 CL0650
Cotton_A_11019_CDS 62 540 60 543 PF00232.18 Glyco_hydro_1 Domain 3 450 453 466.5 6.7e-140 1 CL0058
Cotton_A_35214_CDS 12 122 11 125 PF01412.18 ArfGap Domain 2 114 117 93.6 8.3e-27 1 No_clan
Cotton_A_39104_CDS 129 151 126 152 PF01535.20 PPR Family 6 28 31 13.7 0.056 1 CL0020
Cotton_A_39104_CDS 160 189 160 190 PF01535.20 PPR Family 1 30 31 32.7 5.1e-08 1 CL0020
Cotton_A_39104_CDS 192 238 192 238 PF13041.6 PPR_2 Repeat 1 47 50 68.3 4.9e-19 1 CL0020
Cotton_A_39104_CDS 265 294 265 295 PF01535.20 PPR Family 1 30 31 10.3 0.68 1 CL0020
Cotton_A_39104_CDS 332 381 332 381 PF13041.6 PPR_2 Repeat 1 50 50 32.4 7.8e-08 1 CL0020
Cotton_A_39104_CDS 402 449 402 451 PF13041.6 PPR_2 Repeat 1 48 50 37.1 2.7e-09 1 CL0020
Cotton_A_22622_CDS 61 335 61 335 PF00664.23 ABC_membrane Family 1 274 274 205.3 1.3e-60 1 CL0241
Cotton_A_22622_CDS 404 551 402 551 PF00005.27 ABC_tran Domain 3 137 137 119.4 1.5e-34 1 CL0023
Cotton_A_22622_CDS 718 990 718 991 PF00664.23 ABC_membrane Family 1 273 274 188.5 1.8e-55 1 CL0241
Cotton_A_22622_CDS 1059 1208 1058 1208 PF00005.27 ABC_tran Domain 2 137 137 121.5 3.6e-35 1 CL0023
Cotton_A_38896_CDS 28 106 2 108 PF00078.27 RVT_1 Family 160 220 222 31.4 1.3e-07 1 CL0027
Cotton_A_23445_CDS 141 295 123 331 PF12348.8 CLASP_N Family 49 207 227 32.4 6.5e-08 1 CL0020
Cotton_A_09935_CDS 116 163 114 183 PF01842.25 ACT Domain 3 53 67 32.5 5.2e-08 1 CL0070
Cotton_A_09935_CDS 246 313 245 316 PF01842.25 ACT Domain 2 64 67 27.2 2.5e-06 1 CL0070
Cotton_A_38142_CDS 47 207 47 207 PF01554.18 MatE Family 1 161 161 96.6 1.2e-27 1 CL0222
Cotton_A_38142_CDS 270 429 268 430 PF01554.18 MatE Family 4 160 161 91.5 4.2e-26 1 CL0222
Cotton_A_16820_CDS 111 193 110 195 PF00887.19 ACBP Domain 2 83 85 76.6 1.3e-21 1 CL0632
Cotton_A_38943_CDS 193 368 191 370 PF00122.20 E1-E2_ATPase Family 3 179 181 156.2 6e-46 1 No_clan
Cotton_A_38943_CDS 387 603 386 603 PF00702.26 Hydrolase Domain 2 210 210 118.2 6.1e-34 1 CL0137
Cotton_A_36943_CDS 2 150 1 150 PF04043.15 PMEI Domain 5 154 154 82.6 3.7e-23 1 No_clan
Cotton_A_36943_CDS 196 483 196 484 PF01095.19 Pectinesterase Family 1 297 298 471.0 9.8e-142 1 CL0268
Cotton_A_40469_CDS 16 79 15 80 PF00191.20 Annexin Family 2 65 66 61.0 8.7e-17 1 No_clan
Cotton_A_40469_CDS 88 151 87 152 PF00191.20 Annexin Family 2 65 66 57.1 1.4e-15 1 No_clan
Cotton_A_40469_CDS 171 234 170 235 PF00191.20 Annexin Family 2 65 66 47.0 1.9e-12 1 No_clan
Cotton_A_40469_CDS 246 310 245 310 PF00191.20 Annexin Family 2 66 66 77.2 7.2e-22 1 No_clan
Cotton_A_23575_CDS 248 378 248 378 PF00004.29 AAA Domain 1 132 132 130.3 5.8e-38 1 CL0023
Cotton_A_23575_CDS 403 434 402 455 PF17862.1 AAA_lid_3 Domain 3 34 45 44.7 8.4e-12 1 CL0671
Cotton_A_23575_CDS 447 481 432 481 PF09336.10 Vps4_C Domain 27 61 61 24.1 2.6e-05 1 CL0671
Cotton_A_29196_CDS 216 305 216 305 PF17958.1 EF-hand_13 Domain 1 90 90 119.3 4.7e-35 1 CL0220
Cotton_A_29196_CDS 320 420 320 421 PF13499.6 EF-hand_7 Domain 1 70 71 66.7 1.8e-18 1 CL0220
Cotton_A_33797_CDS 155 418 151 418 PF07714.17 Pkinase_Tyr Domain 5 259 259 139.5 1.2e-40 1 CL0016
Cotton_A_13156_CDS 131 284 131 284 PF09416.10 UPF1_Zn_bind Domain 1 152 152 237.7 4.7e-71 1 CL0229
Cotton_A_13156_CDS 336 425 336 425 PF18141.1 DUF5599 Domain 1 93 93 114.3 2.3e-33 1 No_clan
Cotton_A_13156_CDS 485 568 459 656 PF04851.15 ResIII Family 7 75 171 24.4 2.4e-05 1 CL0023
Cotton_A_13156_CDS 582 684 578 686 PF13086.6 AAA_11 Domain 155 259 261 97.1 1.4e-27 1 CL0023
Cotton_A_13156_CDS 694 889 693 890 PF13087.6 AAA_12 Domain 2 198 199 201.5 1.1e-59 1 CL0023
Cotton_A_24883_CDS 6 91 2 93 PF01397.21 Terpene_synth Domain 27 117 192 101.4 4.8e-29 1 No_clan
Cotton_A_25702_CDS 177 298 170 300 PF03004.14 Transposase_24 Family 10 140 142 53.6 2.5e-14 1 No_clan
Cotton_A_01087_CDS 138 216 131 216 PF01477.23 PLAT Domain 30 117 117 32.2 1.3e-07 1 CL0321
Cotton_A_01087_CDS 229 896 229 896 PF00305.19 Lipoxygenase Domain 1 674 674 1051.5 0 1 No_clan
Cotton_A_00805_CDS 360 409 359 410 PF17780.1 OCRE Domain 2 51 52 65.9 2.4e-18 1 No_clan
Cotton_A_26873_CDS 12 87 1 89 PF02519.14 Auxin_inducible Family 15 88 90 47.0 2.1e-12 1 No_clan
Cotton_A_12321_CDS 3 74 1 75 PF02798.20 GST_N Domain 3 75 76 54.4 1.2e-14 1 CL0172
Cotton_A_12321_CDS 122 202 106 202 PF00043.25 GST_C Domain 17 93 93 58.9 4.5e-16 1 CL0497
Cotton_A_12291_CDS 1 300 1 300 PF01218.18 Coprogen_oxidas Family 5 296 296 451.1 1.1e-135 1 No_clan
Cotton_A_16974_CDS 2 48 1 50 PF04927.12 SMP Family 11 57 59 39.0 8.3e-10 1 No_clan
Cotton_A_20414_CDS 1 434 1 437 PF03321.13 GH3 Family 125 524 527 459.6 1.6e-137 1 CL0378
Cotton_A_12432_CDS 65 563 65 576 PF00012.20 HSP70 Family 1 488 599 327.9 9.3e-98 1 CL0108
Cotton_A_03376_CDS 28 114 28 114 PF05922.16 Inhibitor_I9 Domain 1 82 82 40.9 2.5e-10 1 CL0570
Cotton_A_03376_CDS 141 588 140 609 PF00082.22 Peptidase_S8 Domain 2 285 298 176.8 6e-52 1 No_clan
Cotton_A_03376_CDS 664 765 664 765 PF17766.1 fn3_6 Domain 1 99 99 95.7 1.5e-27 1 CL0159
Cotton_A_31061_CDS 1 95 1 96 PF00501.28 AMP-binding Family 211 316 423 38.9 3.9e-10 1 CL0378
Cotton_A_16425_CDS 3 213 3 214 PF00091.25 Tubulin Domain 1 196 197 234.4 1.2e-69 1 CL0566
Cotton_A_16425_CDS 263 384 263 385 PF03953.17 Tubulin_C Domain 1 125 126 139.1 8.5e-41 1 CL0442
Cotton_A_00883_CDS 26 114 22 132 PF00651.31 BTB Domain 9 97 111 27.4 3.1e-06 1 CL0033
Cotton_A_00883_CDS 212 413 212 413 PF03000.14 NPH3 Family 1 197 258 193.3 5.6e-57 1 No_clan
Cotton_A_00883_CDS 413 439 412 439 PF03000.14 NPH3 Family 232 258 258 31.7 1.2e-07 1 No_clan
Cotton_A_16206_CDS 109 380 104 382 PF00069.25 Pkinase Domain 13 260 264 122.7 1.6e-35 1 CL0016
Cotton_A_12043_CDS 118 184 117 184 PF02207.20 zf-UBR Family 2 70 70 69.1 2.6e-19 1 No_clan
Cotton_A_02179_CDS 7 134 6 134 PF01398.21 JAB Family 2 118 118 91.0 5e-26 1 CL0366
Cotton_A_02179_CDS 191 282 177 282 PF13012.6 MitMem_reg Family 21 112 112 68.9 4.7e-19 1 No_clan
Cotton_A_02420_CDS 19 91 19 92 PF00076.22 RRM_1 Domain 1 69 70 54.3 8.7e-15 1 CL0221
Cotton_A_36087_CDS 236 468 235 470 PF13641.6 Glyco_tranf_2_3 Domain 3 228 230 80.6 1.5e-22 1 CL0110
Cotton_A_13723_CDS 1 256 1 258 PF01501.20 Glyco_transf_8 Family 4 254 256 160.6 5.1e-47 1 CL0110
Cotton_A_02322_CDS 44 168 43 168 PF04424.13 MINDY_DUB Family 2 117 117 121.3 2e-35 1 No_clan
Cotton_A_18006_CDS 91 348 87 352 PF07714.17 Pkinase_Tyr Domain 5 255 259 110.4 8.9e-32 1 CL0016
Cotton_A_25549_CDS 2 69 2 82 PF02326.15 YMF19 Family 1 72 86 70.6 1.4e-19 1 CL0255
Cotton_A_25549_CDS 93 140 93 140 PF06449.11 DUF1082 Family 1 51 51 94.3 2.8e-27 1 No_clan
Cotton_A_02303_CDS 43 136 17 143 PF00179.26 UQ_con Domain 24 115 140 50.6 1.4e-13 1 CL0208
Cotton_A_19961_CDS 23 71 22 73 PF16544.5 STAR_dimer Domain 2 50 53 47.8 7.8e-13 1 No_clan
Cotton_A_19961_CDS 143 184 134 193 PF00013.29 KH_1 Domain 10 43 66 24.4 1.9e-05 1 CL0007
Cotton_A_03206_CDS 14 127 10 127 PF05348.11 UMP1 Family 5 118 118 120.2 5.3e-35 1 No_clan
Cotton_A_09081_CDS 60 93 58 97 PF12937.7 F-box-like Domain 3 35 48 29.3 5.9e-07 1 CL0271
Cotton_A_09081_CDS 229 252 228 252 PF13516.6 LRR_6 Repeat 2 24 24 13.7 0.047 1 CL0022
Cotton_A_09081_CDS 523 543 523 543 PF13516.6 LRR_6 Repeat 4 24 24 9.4 1.1 1 CL0022
Cotton_A_09081_CDS 546 568 545 568 PF13516.6 LRR_6 Repeat 2 24 24 14.3 0.031 1 CL0022
Cotton_A_21434_CDS 3 123 1 124 PF00125.24 Histone Domain 3 130 131 85.8 3.2e-24 1 CL0012
Cotton_A_36680_CDS 144 261 144 261 PF13640.6 2OG-FeII_Oxy_3 Domain 1 96 96 76.7 1.9e-21 1 CL0029
Cotton_A_36680_CDS 275 315 274 315 PF01549.24 ShK Domain 2 38 38 27.2 4.3e-06 1 CL0213
Cotton_A_21063_CDS 7 76 2 99 PF00931.22 NB-ARC Domain 154 222 252 49.6 3e-13 1 CL0023
Cotton_A_00985_CDS 497 713 495 778 PF00069.25 Pkinase Domain 3 203 264 152.3 1.5e-44 1 CL0016
Cotton_A_18865_CDS 116 159 115 159 PF13639.6 zf-RING_2 Domain 2 44 44 48.4 8.3e-13 1 CL0229
Cotton_A_17006_CDS 324 589 321 592 PF07714.17 Pkinase_Tyr Domain 4 256 259 142.9 1.1e-41 1 CL0016
Cotton_A_12379_CDS 18 102 15 104 PF03083.16 MtN3_slv Family 4 85 87 70.1 1.2e-19 1 CL0141
Cotton_A_02774_CDS 4 438 2 438 PF02458.15 Transferase Family 3 434 434 238.7 9.8e-71 1 CL0149
Cotton_A_32286_CDS 84 197 84 198 PF03479.15 DUF296 Domain 1 106 107 97.6 4.9e-28 1 CL0615
Cotton_A_25266_CDS 66 113 65 113 PF01344.25 Kelch_1 Repeat 4 45 46 22.3 7.4e-05 1 CL0186
Cotton_A_28331_CDS 10 172 9 172 PF07933.14 DUF1681 Family 2 148 148 182.7 3.1e-54 1 CL0266
Cotton_A_31569_CDS 3 266 2 277 PF00743.19 FMO-like Family 2 244 532 96.0 1.8e-27 1 CL0063
Cotton_A_15383_CDS 146 404 146 404 PF00069.25 Pkinase Domain 1 264 264 241.3 1.1e-71 1 CL0016
Cotton_A_15383_CDS 452 512 449 513 PF13499.6 EF-hand_7 Domain 4 70 71 46.1 5.1e-12 1 CL0220
Cotton_A_15383_CDS 522 583 521 583 PF13499.6 EF-hand_7 Domain 2 71 71 48.6 8.3e-13 1 CL0220
Cotton_A_33226_CDS 14 234 13 234 PF00230.20 MIP Family 2 227 227 262.2 4.2e-78 1 No_clan
Cotton_A_26871_CDS 4 104 1 111 PF05208.13 ALG3 Family 101 201 358 102.0 4.4e-29 1 CL0111
Cotton_A_05885_CDS 47 155 46 157 PF00072.24 Response_reg Domain 2 110 112 49.5 4e-13 1 CL0304
Cotton_A_18527_CDS 41 142 39 142 PF01477.23 PLAT Domain 3 117 117 37.5 2.9e-09 1 CL0321
Cotton_A_18527_CDS 156 213 155 224 PF00305.19 Lipoxygenase Domain 2 67 674 62.0 3.8e-17 1 No_clan
Cotton_A_18527_CDS 222 439 210 439 PF00305.19 Lipoxygenase Domain 122 352 674 255.9 8.2e-76 1 No_clan
Cotton_A_40629_CDS 194 474 193 476 PF03016.15 Exostosin Family 2 298 300 197.1 3.8e-58 1 No_clan
Cotton_A_17473_CDS 21 76 20 78 PF02701.15 zf-Dof Family 2 57 59 112.2 9.3e-33 1 No_clan
Cotton_A_07139_CDS 121 437 121 437 PF10250.9 O-FucT Family 1 336 336 242.7 8.5e-72 1 CL0113
Cotton_A_32135_CDS 13 72 12 78 PF00076.22 RRM_1 Domain 2 64 70 30.2 3e-07 1 CL0221
Cotton_A_16182_CDS 285 378 282 396 PF00069.25 Pkinase Domain 62 153 264 81.7 5.6e-23 1 CL0016
Cotton_A_16182_CDS 457 560 446 560 PF00069.25 Pkinase Domain 154 264 264 74.1 1.2e-20 1 CL0016
Cotton_A_25888_CDS 21 75 20 76 PF00046.29 Homeodomain Domain 2 56 57 56.6 1.7e-15 1 CL0123
Cotton_A_25888_CDS 77 118 77 119 PF02183.18 HALZ Coiled-coil 1 42 43 55.1 6.2e-15 1 No_clan
Cotton_A_06776_CDS 105 248 105 248 PF00258.25 Flavodoxin_1 Domain 1 143 143 113.0 1.3e-32 1 CL0042
Cotton_A_06776_CDS 307 528 305 528 PF00667.20 FAD_binding_1 Domain 4 222 222 238.6 5.6e-71 1 CL0076
Cotton_A_06776_CDS 565 675 565 676 PF00175.21 NAD_binding_1 Domain 1 108 109 62.1 6.5e-17 1 CL0091
Cotton_A_11128_CDS 252 303 252 303 PF00249.31 Myb_DNA-binding Domain 1 46 46 25.7 9.8e-06 1 CL0123
Cotton_A_36868_CDS 63 139 62 139 PF03330.18 DPBB_1 Domain 2 83 83 49.3 4.6e-13 1 CL0199
Cotton_A_36868_CDS 153 234 152 234 PF01357.21 Pollen_allerg_1 Domain 3 80 80 73.7 9.3e-21 1 CL0159
Cotton_A_39395_CDS 31 224 18 224 PF06045.11 Rhamnogal_lyase Family 17 213 213 241.2 7.7e-72 1 CL0103
Cotton_A_39395_CDS 380 452 379 453 PF14686.6 fn3_3 Domain 2 74 75 74.3 4.8e-21 1 CL0287
Cotton_A_39395_CDS 466 654 466 654 PF14683.6 CBM-like Domain 1 165 165 167.1 2.8e-49 1 CL0202
Cotton_A_10700_CDS 42 95 42 95 PF05605.12 zf-Di19 Domain 1 54 54 74.5 6.1e-21 1 CL0361
Cotton_A_10700_CDS 113 213 113 213 PF14571.6 Di19_C Family 1 102 102 126.2 6.4e-37 1 No_clan
Cotton_A_01138_CDS 60 204 60 216 PF13460.6 NAD_binding_10 Domain 1 147 184 74.9 7.1e-21 1 CL0063
Cotton_A_09943_CDS 67 100 66 100 PF08880.11 QLQ Domain 2 35 35 43.4 2e-11 1 No_clan
Cotton_A_09943_CDS 137 179 137 179 PF08879.10 WRC Domain 1 43 43 77.6 4e-22 1 No_clan
Cotton_A_08285_CDS 13 75 13 75 PF00462.24 Glutaredoxin Domain 1 60 60 41.2 1.4e-10 1 CL0172
Cotton_A_06362_CDS 237 317 237 317 PF04000.15 Sas10_Utp3 Family 1 87 87 59.2 4.8e-16 1 No_clan
Cotton_A_06362_CDS 568 640 567 640 PF09368.10 Sas10 Domain 2 74 74 77.5 8.3e-22 1 No_clan
Cotton_A_39997_CDS 38 124 37 124 PF13837.6 Myb_DNA-bind_4 Domain 2 90 90 69.8 2e-19 1 CL0123
Cotton_A_39997_CDS 302 389 301 389 PF13837.6 Myb_DNA-bind_4 Domain 2 90 90 82.1 2.8e-23 1 CL0123
Cotton_A_12529_CDS 98 248 98 249 PF11016.8 DUF2854 Family 1 145 146 167.8 1.4e-49 1 No_clan
Cotton_A_02197_CDS 8 186 8 186 PF07574.13 SMC_Nse1 Family 1 194 194 150.8 4e-44 1 CL0123
Cotton_A_02197_CDS 198 240 198 240 PF08746.11 zf-RING-like Domain 1 43 43 35.1 1.2e-08 1 CL0229
Cotton_A_03498_CDS 4 67 4 67 PF00226.31 DnaJ Domain 1 63 63 93.4 6.9e-27 1 CL0392
Cotton_A_03498_CDS 167 325 167 325 PF01556.18 DnaJ_C Domain 1 148 148 154.8 1.6e-45 1 No_clan
Cotton_A_12320_CDS 319 418 319 420 PF12862.7 ANAPC5 Family 1 92 94 92.1 1.7e-26 1 CL0020
Cotton_A_23308_CDS 16 568 16 569 PF03321.13 GH3 Family 1 526 527 651.3 1.3e-195 1 CL0378
Cotton_A_04489_CDS 33 212 33 213 PF04832.12 SOUL Family 1 167 168 125.3 2.6e-36 1 CL0319
Cotton_A_27753_CDS 14 228 11 228 PF00230.20 MIP Family 4 227 227 220.0 3.2e-65 1 No_clan
Cotton_A_08179_CDS 145 436 132 437 PF04107.13 GCS2 Family 15 290 291 312.5 2.7e-93 1 CL0286
Cotton_A_23621_CDS 182 281 181 282 PF08241.12 Methyltransf_11 Domain 2 95 96 85.6 2.8e-24 1 CL0063
Cotton_A_23354_CDS 9 54 8 56 PF00646.33 F-box Domain 2 46 48 19.9 0.0005 1 CL0271
Cotton_A_16567_CDS 32 236 30 237 PF00009.27 GTP_EFTU Domain 3 193 194 88.0 5.8e-25 1 CL0023
Cotton_A_16567_CDS 268 350 268 351 PF03144.25 GTP_EFTU_D2 Domain 1 73 74 39.4 6.1e-10 1 CL0575
Cotton_A_16567_CDS 362 451 361 451 PF09173.11 eIF2_C Domain 2 86 86 123.2 3.9e-36 1 No_clan
Cotton_A_27230_CDS 21 83 21 102 PF01000.26 RNA_pol_A_bac Domain 1 63 112 41.4 1.5e-10 1 No_clan
Cotton_A_05549_CDS 5 83 3 83 PF02319.20 E2F_TDP Domain 4 71 71 71.4 4.8e-20 1 CL0123
Cotton_A_05549_CDS 91 207 90 222 PF08781.10 DP Domain 2 118 138 97.8 4.8e-28 1 No_clan
Cotton_A_18106_CDS 49 205 48 207 PF03446.15 NAD_binding_2 Domain 2 156 158 150.2 5.1e-44 1 CL0063
Cotton_A_18106_CDS 210 327 210 330 PF14833.6 NAD_binding_11 Domain 1 119 122 108.1 3.3e-31 1 CL0106
Cotton_A_27491_CDS 4 99 2 105 PF14111.6 DUF4283 Domain 39 139 145 38.0 1e-09 1 No_clan
Cotton_A_14165_CDS 2 89 1 89 PF00685.27 Sulfotransfer_1 Domain 11 112 267 50.7 1.7e-13 1 CL0023
Cotton_A_19032_CDS 259 290 251 290 PF00400.32 WD40 Repeat 9 38 38 17.7 0.005 1 CL0186
Cotton_A_19032_CDS 390 427 388 427 PF00400.32 WD40 Repeat 3 38 38 17.3 0.0063 1 CL0186
Cotton_A_28654_CDS 503 528 485 529 PF00400.32 WD40 Repeat 12 37 38 12.3 0.25 1 CL0186
Cotton_A_28654_CDS 560 821 545 840 PF08596.10 Lgl_C Family 81 345 393 37.6 1e-09 1 CL0186
Cotton_A_14654_CDS 52 318 48 318 PF12037.8 DUF3523 Family 5 265 265 355.7 1.5e-106 1 No_clan
Cotton_A_14654_CDS 386 513 386 513 PF00004.29 AAA Domain 1 132 132 91.1 7.4e-26 1 CL0023
Cotton_A_20469_CDS 122 249 121 249 PF16719.5 SAWADEE Domain 2 141 141 146.3 5.8e-43 1 CL0049
Cotton_A_31210_CDS 32 82 6 92 PF00004.29 AAA Domain 38 89 132 31.7 1.7e-07 1 CL0023
Cotton_A_03395_CDS 7 95 6 106 PF00168.30 C2 Domain 2 91 103 37.8 1.8e-09 1 CL0154
Cotton_A_20384_CDS 54 69 53 70 PF13516.6 LRR_6 Repeat 2 17 24 9.9 0.82 1 CL0022
Cotton_A_20384_CDS 184 245 183 245 PF13855.6 LRR_8 Repeat 2 61 61 31.2 1.3e-07 1 CL0022
Cotton_A_20384_CDS 473 528 470 528 PF13855.6 LRR_8 Repeat 6 61 61 30.0 3.2e-07 1 CL0022
Cotton_A_20384_CDS 538 555 538 556 PF13516.6 LRR_6 Repeat 1 18 24 9.8 0.89 1 CL0022
Cotton_A_31823_CDS 168 296 168 296 PF17675.1 APG6_N Coiled-coil 1 133 133 92.6 2.8e-26 1 No_clan
Cotton_A_31823_CDS 299 361 299 368 PF04111.12 APG6 Domain 1 63 179 99.4 2.2e-28 1 No_clan
Cotton_A_31823_CDS 382 493 369 495 PF04111.12 APG6 Domain 64 177 179 102.5 2.6e-29 1 No_clan
Cotton_A_32189_CDS 13 104 12 130 PF18052.1 Rx_N Domain 2 89 93 73.9 9.7e-21 1 No_clan
Cotton_A_32189_CDS 202 406 185 429 PF00931.22 NB-ARC Domain 13 221 252 157.7 2.9e-46 1 CL0023
Cotton_A_12168_CDS 39 225 38 231 PF00931.22 NB-ARC Domain 31 222 252 131.9 2.2e-38 1 CL0023
Cotton_A_22367_CDS 10 478 8 493 PF03094.15 Mlo Family 3 463 479 663.8 1.1e-199 1 No_clan
Cotton_A_29832_CDS 16 92 16 92 PF06093.13 Spt4 Domain 1 77 77 112.4 8.1e-33 1 CL0167
Cotton_A_12591_CDS 14 94 14 100 PF15699.5 NPR1_interact Family 1 86 109 62.6 4.6e-17 1 No_clan
Cotton_A_00945_CDS 64 82 64 82 PF08137.12 DVL Family 1 19 19 46.6 2.1e-12 1 No_clan
Cotton_A_20280_CDS 60 162 57 169 PF00069.25 Pkinase Domain 4 101 264 39.8 3.2e-10 1 CL0016
Cotton_A_29270_CDS 26 124 11 131 PF00892.20 EamA Family 16 112 137 42.4 7.1e-11 1 CL0184
Cotton_A_04663_CDS 12 147 10 147 PF04885.13 Stig1 Family 2 139 139 143.2 7e-42 1 No_clan
Cotton_A_20937_CDS 91 135 90 135 PF13639.6 zf-RING_2 Domain 2 44 44 45.5 7.1e-12 1 CL0229
Cotton_A_02453_CDS 29 105 29 106 PF13417.6 GST_N_3 Domain 1 74 75 76.7 1.4e-21 1 CL0172
Cotton_A_02453_CDS 142 207 75 207 PF13410.6 GST_C_2 Domain 9 69 69 48.8 5.2e-13 1 CL0497
Cotton_A_09484_CDS 4 111 2 132 PF00790.19 VHS Domain 9 119 141 75.2 4.4e-21 1 CL0009
Cotton_A_09484_CDS 191 266 190 266 PF03127.14 GAT Domain 2 77 77 43.6 2.6e-11 1 No_clan
Cotton_A_08884_CDS 16 137 14 141 PF04857.20 CAF1 Family 3 125 319 34.2 1.5e-08 1 CL0219
Cotton_A_10245_CDS 120 343 118 350 PF04499.15 SAPS Family 3 233 489 113.5 1.1e-32 1 No_clan
Cotton_A_10245_CDS 350 484 341 484 PF04499.15 SAPS Family 355 489 489 88.8 3.4e-25 1 No_clan
Cotton_A_08993_CDS 44 235 43 238 PF00149.28 Metallophos Domain 2 201 204 128.0 6.7e-37 1 CL0163
Cotton_A_17025_CDS 1 74 1 75 PF04367.13 DUF502 Family 33 105 106 54.6 8e-15 1 No_clan
Cotton_A_40252_CDS 11 74 2 82 PF00168.30 C2 Domain 31 95 103 49.0 5.8e-13 1 CL0154
Cotton_A_07760_CDS 74 160 74 160 PF00677.17 Lum_binding Domain 1 87 87 77.6 5.3e-22 1 CL0076
Cotton_A_07760_CDS 173 259 173 259 PF00677.17 Lum_binding Domain 1 87 87 68.9 2.7e-19 1 CL0076
Cotton_A_40311_CDS 37 131 36 132 PF01657.17 Stress-antifung Family 2 94 95 70.8 1.1e-19 1 No_clan
Cotton_A_40311_CDS 182 234 145 236 PF01657.17 Stress-antifung Family 44 93 95 41.0 2.2e-10 1 No_clan
Cotton_A_28817_CDS 12 93 11 118 PF00855.17 PWWP Domain 3 82 96 37.8 1.9e-09 1 CL0049
Cotton_A_09913_CDS 2 43 2 43 PF18253.1 HipN Domain 1 42 42 70.8 5.4e-20 1 No_clan
Cotton_A_09913_CDS 157 187 155 188 PF13181.6 TPR_8 Repeat 3 33 34 17.8 0.0026 1 CL0020
Cotton_A_09913_CDS 332 382 331 382 PF17830.1 STI1 Domain 5 55 55 49.5 2.9e-13 1 No_clan
Cotton_A_01797_CDS 230 250 229 251 PF00642.24 zf-CCCH Family 5 26 27 22.9 5.9e-05 1 CL0537
Cotton_A_35439_CDS 63 94 63 95 PF13181.6 TPR_8 Repeat 2 33 34 18.8 0.0013 1 CL0020
Cotton_A_14080_CDS 15 206 15 206 PF13419.6 HAD_2 Family 1 178 178 35.8 7.9e-09 1 CL0137
Cotton_A_19613_CDS 91 178 91 178 PF11942.8 Spt5_N Domain 1 99 99 50.3 3.6e-13 1 No_clan
Cotton_A_19613_CDS 184 265 184 265 PF03439.13 Spt5-NGN Family 1 84 84 87.5 4e-25 1 CL0439
Cotton_A_19613_CDS 479 506 479 521 PF00467.29 KOW Family 1 28 32 40.1 2.1e-10 1 CL0107
Cotton_A_34930_CDS 207 465 204 474 PF00331.20 Glyco_hydro_10 Family 6 279 316 145.2 2.4e-42 1 CL0058
Cotton_A_13539_CDS 6 48 4 50 PF00646.33 F-box Domain 4 46 48 33.8 2.1e-08 1 CL0271
Cotton_A_13539_CDS 232 320 230 323 PF08268.12 FBA_3 Domain 3 75 128 25.6 9.5e-06 1 CL0162
Cotton_A_28176_CDS 43 292 38 292 PF00141.23 peroxidase Domain 2 229 229 229.8 3.3e-68 1 CL0617
Cotton_A_24370_CDS 68 228 68 228 PF01554.18 MatE Family 1 161 161 111.0 4.2e-32 1 CL0222
Cotton_A_24370_CDS 289 451 289 452 PF01554.18 MatE Family 1 160 161 104.7 3.8e-30 1 CL0222
Cotton_A_35949_CDS 11 172 11 174 PF00091.25 Tubulin Domain 1 195 197 135.3 2.9e-39 1 CL0566
Cotton_A_35949_CDS 222 316 222 316 PF12327.8 FtsZ_C Domain 1 95 95 105.6 1.3e-30 1 CL0442
Cotton_A_21554_CDS 79 184 56 185 PF00134.23 Cyclin_N Domain 25 126 127 97.4 4.8e-28 1 CL0065
Cotton_A_21554_CDS 187 288 187 308 PF02984.19 Cyclin_C Domain 1 98 119 68.3 6.1e-19 1 CL0065
Cotton_A_12718_CDS 390 483 390 488 PF09759.9 Atx10homo_assoc Domain 1 94 99 117.2 2.5e-34 1 CL0020
Cotton_A_18587_CDS 64 335 28 336 PF00069.25 Pkinase Domain 15 261 264 100.5 9.7e-29 1 CL0016
Cotton_A_27789_CDS 17 178 17 179 PF00071.22 Ras Domain 1 161 162 223.1 1.4e-66 1 CL0023
Cotton_A_27005_CDS 71 242 70 242 PF04727.13 ELMO_CED12 Family 2 177 177 165.2 1.5e-48 1 No_clan
Cotton_A_37484_CDS 25 110 23 112 PF04525.12 LOR Domain 3 89 187 80.3 1.3e-22 1 CL0395
Cotton_A_30001_CDS 60 318 60 318 PF00069.25 Pkinase Domain 1 264 264 260.2 1.9e-77 1 CL0016
Cotton_A_30001_CDS 377 428 377 429 PF13833.6 EF-hand_8 Domain 1 54 55 23.9 2.7e-05 1 CL0220
Cotton_A_30001_CDS 436 499 435 499 PF13499.6 EF-hand_7 Domain 2 71 71 56.3 3.4e-15 1 CL0220
Cotton_A_34523_CDS 358 638 338 638 PF00225.23 Kinesin Domain 23 328 333 306.5 1.8e-91 1 CL0023
Cotton_A_29108_CDS 28 153 28 153 PF02365.15 NAM Family 1 126 126 113.2 1.5e-32 1 No_clan
Cotton_A_13725_CDS 175 370 165 379 PF01457.16 Peptidase_M8 Family 97 282 529 99.5 1.9e-28 1 CL0126
Cotton_A_35449_CDS 64 112 64 113 PF00847.20 AP2 Domain 1 53 54 35.2 1e-08 1 CL0081
Cotton_A_35449_CDS 193 294 193 297 PF02362.21 B3 Family 1 98 101 98.4 1.7e-28 1 CL0405
Cotton_A_00100_CDS 34 126 33 126 PF01657.17 Stress-antifung Family 2 94 95 71.2 8.3e-20 1 No_clan
Cotton_A_00100_CDS 146 237 141 238 PF01657.17 Stress-antifung Family 7 94 95 53.3 3.3e-14 1 No_clan
Cotton_A_00100_CDS 345 610 342 610 PF07714.17 Pkinase_Tyr Domain 4 259 259 165.1 1.8e-48 1 CL0016
Cotton_A_22416_CDS 115 399 115 399 PF00069.25 Pkinase Domain 1 264 264 222.0 8.3e-66 1 CL0016
Cotton_A_23618_CDS 95 346 34 349 PF00933.21 Glyco_hydro_3 Domain 81 316 319 120.3 1e-34 1 CL0058
Cotton_A_23618_CDS 390 567 390 577 PF01915.22 Glyco_hydro_3_C Domain 1 164 204 144.7 3.4e-42 1 No_clan
Cotton_A_23618_CDS 712 777 710 777 PF14310.6 Fn3-like Family 3 68 71 32.7 5.8e-08 1 CL0159
Cotton_A_07191_CDS 107 287 107 288 PF00390.19 malic Domain 1 181 182 264.6 4.1e-79 1 CL0603
Cotton_A_07191_CDS 298 557 298 557 PF03949.15 Malic_M Domain 1 258 258 315.1 3e-94 1 CL0063
Cotton_A_02545_CDS 7 311 1 312 PF03492.15 Methyltransf_7 Family 12 333 334 404.2 4.5e-121 1 CL0063
Cotton_A_11542_CDS 457 510 457 521 PF00076.22 RRM_1 Domain 1 59 70 30.9 1.8e-07 1 CL0221
Cotton_A_08860_CDS 153 273 151 274 PF01553.21 Acyltransferase Family 3 134 135 65.6 3.2e-18 1 CL0228
Cotton_A_21828_CDS 25 577 24 578 PF03321.13 GH3 Family 2 525 527 607.2 2.9e-182 1 CL0378
Cotton_A_25030_CDS 73 392 66 400 PF00295.17 Glyco_hydro_28 Domain 7 320 325 287.1 1.6e-85 1 CL0268
Cotton_A_25030_CDS 446 676 446 676 PF04981.13 NMD3 Family 1 243 243 254.9 6.8e-76 1 No_clan
Cotton_A_18884_CDS 48 109 40 111 PF00970.24 FAD_binding_6 Domain 35 96 99 53.3 2.8e-14 1 CL0076
Cotton_A_28132_CDS 176 342 176 342 PF13359.6 DDE_Tnp_4 Domain 1 158 158 114.4 3.7e-33 1 CL0219
Cotton_A_28767_CDS 3 316 2 318 PF08267.12 Meth_synt_1 Domain 2 311 313 393.4 8.4e-118 1 CL0160
Cotton_A_28767_CDS 432 760 432 761 PF01717.18 Meth_synt_2 Domain 1 323 324 517.3 1.6e-155 1 CL0160
Cotton_A_16760_CDS 127 228 127 229 PF02362.21 B3 Family 1 100 101 74.4 5.2e-21 1 CL0405
Cotton_A_16760_CDS 253 336 253 336 PF06507.13 Auxin_resp Family 1 83 83 114.7 1.7e-33 1 No_clan
Cotton_A_29368_CDS 30 89 16 92 PF01486.17 K-box Family 16 75 93 44.8 1e-11 1 No_clan
Cotton_A_05238_CDS 1 425 1 429 PF02458.15 Transferase Family 1 429 434 340.3 1.4e-101 1 CL0149
Cotton_A_34430_CDS 38 90 37 91 PF01165.20 Ribosomal_S21 Family 2 54 55 46.2 2.7e-12 1 No_clan
Cotton_A_31011_CDS 190 231 188 231 PF13639.6 zf-RING_2 Domain 3 44 44 45.8 5.7e-12 1 CL0229
Cotton_A_35680_CDS 135 199 134 199 PF12352.8 V-SNARE_C Domain 2 66 66 65.7 3.4e-18 1 CL0147
Cotton_A_08982_CDS 103 221 102 223 PF02893.20 GRAM Domain 2 111 114 67.0 1.3e-18 1 CL0266
Cotton_A_14699_CDS 333 416 313 416 PF07839.11 CaM_binding Domain 34 117 117 68.5 8e-19 1 No_clan
Cotton_A_16186_CDS 30 118 29 119 PF02269.16 TFIID-18kDa Domain 2 92 93 107.8 2.1e-31 1 CL0012
Cotton_A_17801_CDS 41 75 41 76 PF00320.27 GATA Domain 1 35 36 61.7 3.6e-17 1 CL0167
Cotton_A_34785_CDS 3 237 1 238 PF00931.22 NB-ARC Domain 16 251 252 178.6 1.2e-52 1 CL0023
Cotton_A_09373_CDS 15 102 12 104 PF00153.27 Mito_carr Family 5 95 97 78.4 2.9e-22 1 No_clan
Cotton_A_09373_CDS 112 209 109 213 PF00153.27 Mito_carr Family 6 93 97 80.9 5e-23 1 No_clan
Cotton_A_09373_CDS 214 306 213 309 PF00153.27 Mito_carr Family 2 93 97 73.0 1.4e-20 1 No_clan
Cotton_A_28174_CDS 68 92 68 92 PF12874.7 zf-met Domain 1 25 25 21.2 0.00028 1 CL0361
Cotton_A_28174_CDS 167 268 165 270 PF12756.7 zf-C2H2_2 Family 2 99 101 87.3 6.8e-25 1 CL0361
Cotton_A_34822_CDS 20 58 19 59 PF08263.12 LRRNT_2 Family 2 40 41 45.5 6.9e-12 1 No_clan
Cotton_A_34822_CDS 307 323 306 323 PF13516.6 LRR_6 Repeat 2 18 24 12.5 0.12 1 CL0022
Cotton_A_34822_CDS 636 860 635 910 PF00069.25 Pkinase Domain 2 212 264 154.7 3e-45 1 CL0016
Cotton_A_00633_CDS 263 324 257 326 PF00076.22 RRM_1 Domain 7 68 70 42.1 5.7e-11 1 CL0221
Cotton_A_00633_CDS 358 427 358 427 PF00076.22 RRM_1 Domain 1 70 70 74.4 4.5e-21 1 CL0221
Cotton_A_00633_CDS 448 553 446 554 PF15519.6 RBM39linker Domain 2 90 91 76.8 2.2e-21 1 No_clan
Cotton_A_00633_CDS 560 612 558 613 PF00076.22 RRM_1 Domain 13 69 70 24.0 2.5e-05 1 CL0221
Cotton_A_31642_CDS 155 410 155 411 PF07859.13 Abhydrolase_3 Domain 1 210 211 219.3 5.1e-65 1 CL0028
Cotton_A_24038_CDS 525 676 525 685 PF00069.25 Pkinase Domain 1 149 264 112.9 1.7e-32 1 CL0016
Cotton_A_01491_CDS 53 94 52 98 PF02701.15 zf-Dof Family 2 43 59 83.4 8.7e-24 1 No_clan
Cotton_A_32643_CDS 5 96 5 97 PF02362.21 B3 Family 1 99 101 57.3 1.1e-15 1 CL0405
Cotton_A_32643_CDS 242 332 239 334 PF02362.21 B3 Family 4 99 101 61.7 4.9e-17 1 CL0405
Cotton_A_16238_CDS 126 211 110 232 PF01852.19 START Domain 43 123 209 31.3 1.3e-07 1 CL0209
Cotton_A_06606_CDS 24 63 10 67 PF11960.8 DUF3474 Family 91 130 135 33.4 4.6e-08 1 No_clan
Cotton_A_06606_CDS 86 150 82 166 PF00487.24 FA_desaturase Domain 3 74 254 41.5 1.4e-10 1 No_clan
Cotton_A_27834_CDS 83 356 79 356 PF07714.17 Pkinase_Tyr Domain 5 259 259 158.9 1.4e-46 1 CL0016
Cotton_A_32708_CDS 228 354 227 354 PF07526.11 POX Domain 2 136 136 158.0 2e-46 1 No_clan
Cotton_A_32708_CDS 423 463 423 463 PF05920.11 Homeobox_KN Family 1 40 40 53.8 1.3e-14 1 CL0123
Cotton_A_04953_CDS 24 144 23 144 PF00903.25 Glyoxalase Domain 2 128 128 79.1 3.2e-22 1 CL0104
Cotton_A_04953_CDS 156 275 154 278 PF00903.25 Glyoxalase Domain 4 125 128 53.7 2.3e-14 1 CL0104
Cotton_A_08677_CDS 9 79 9 90 PF00179.26 UQ_con Domain 1 67 140 47.8 1.1e-12 1 CL0208
Cotton_A_13428_CDS 60 161 29 161 PF01161.20 PBP Domain 23 132 132 51.1 1.7e-13 1 No_clan
Cotton_A_28377_CDS 22 61 22 61 PF00187.19 Chitin_bind_1 Domain 1 38 38 52.8 4e-14 1 No_clan
Cotton_A_28377_CDS 73 191 73 191 PF00967.17 Barwin Domain 1 119 119 210.7 3.5e-63 1 CL0199
Cotton_A_13172_CDS 6 90 6 90 PF01780.19 Ribosomal_L37ae Family 1 85 85 133.2 2.6e-39 1 CL0167
Cotton_A_17085_CDS 165 338 161 339 PF03352.13 Adenine_glyco Family 3 176 177 202.2 5.3e-60 1 No_clan
Cotton_A_13963_CDS 8 156 6 156 PF00582.26 Usp Domain 3 141 141 94.0 1.1e-26 1 CL0039
Cotton_A_33877_CDS 13 75 13 75 PF00462.24 Glutaredoxin Domain 1 60 60 45.9 4.9e-12 1 CL0172
Cotton_A_34064_CDS 46 250 44 250 PF00804.25 Syntaxin Domain 3 200 200 220.2 2.1e-65 1 CL0445
Cotton_A_34064_CDS 251 303 251 303 PF05739.19 SNARE Family 1 53 53 69.6 1.6e-19 1 No_clan
Cotton_A_36499_CDS 7 64 6 78 PF06364.12 DUF1068 Family 2 60 168 60.0 2.5e-16 1 No_clan
Cotton_A_27468_CDS 12 118 10 122 PF00572.18 Ribosomal_L13 Family 3 120 125 34.5 2.1e-08 1 No_clan
Cotton_A_28628_CDS 89 139 88 140 PF00847.20 AP2 Domain 2 53 54 51.7 7.7e-14 1 CL0081
Cotton_A_17055_CDS 65 740 20 740 PF03030.16 H_PPase Family 16 650 650 834.0 9.8e-251 1 No_clan
Cotton_A_20673_CDS 178 311 177 314 PF01764.25 Lipase_3 Family 2 139 142 84.3 7.3e-24 1 CL0028
Cotton_A_09341_CDS 24 211 23 211 PF13869.6 NUDIX_2 Domain 2 188 188 250.1 1.1e-74 1 CL0261
Cotton_A_10566_CDS 2 82 1 126 PF03514.14 GRAS Family 253 333 374 53.6 1.7e-14 1 CL0063
Cotton_A_31279_CDS 8 114 8 114 PF17766.1 fn3_6 Domain 1 99 99 81.7 3.5e-23 1 CL0159
Cotton_A_23234_CDS 15 118 15 118 PF02991.16 Atg8 Domain 1 104 104 151.9 5.1e-45 1 CL0072
Cotton_A_14377_CDS 1 302 1 303 PF04142.15 Nuc_sug_transp Family 5 314 315 189.5 7.7e-56 1 CL0184
Cotton_A_07124_CDS 8 135 8 135 PF02365.15 NAM Family 1 126 126 127.8 4.5e-37 1 No_clan
Cotton_A_04650_CDS 23 252 18 253 PF13561.6 adh_short_C2 Domain 4 233 234 206.3 4.6e-61 1 CL0063
Cotton_A_18222_CDS 5 38 4 47 PF00646.33 F-box Domain 3 35 48 25.1 1.2e-05 1 CL0271
Cotton_A_18222_CDS 304 362 304 362 PF03478.18 DUF295 Domain 1 55 55 63.5 9.5e-18 1 No_clan
Cotton_A_12522_CDS 5 79 3 81 PF00240.23 ubiquitin Domain 3 70 72 28.0 1.3e-06 1 CL0072
Cotton_A_29717_CDS 95 136 86 152 PF05617.11 Prolamin_like Domain 9 51 71 26.3 6.1e-06 1 CL0482
Cotton_A_24924_CDS 1 47 1 47 PF11421.8 Synthase_beta Family 1 49 49 49.2 6.4e-13 1 No_clan
Cotton_A_24924_CDS 89 155 89 155 PF02874.23 ATP-synt_ab_N Domain 1 69 69 72.5 3.1e-20 1 CL0275
Cotton_A_24924_CDS 212 433 212 433 PF00006.25 ATP-synt_ab Domain 1 213 213 205.5 7.2e-61 1 CL0023
Cotton_A_33832_CDS 171 420 170 420 PF00454.27 PI3_PI4_kinase Family 2 250 250 166.4 1e-48 1 CL0016
Cotton_A_33843_CDS 35 393 33 395 PF01094.28 ANF_receptor Family 3 352 354 257.6 1.8e-76 1 CL0144
Cotton_A_33843_CDS 475 766 455 768 PF00497.20 SBP_bac_3 Domain 18 223 225 68.3 6.5e-19 1 CL0177
Cotton_A_33843_CDS 548 797 544 800 PF00060.26 Lig_chan Family 12 146 149 88.4 4e-25 1 CL0030
Cotton_A_33901_CDS 55 155 54 155 PF02410.15 RsfS Family 2 99 99 88.4 3.2e-25 1 CL0260
Cotton_A_26545_CDS 30 136 29 136 PF13947.6 GUB_WAK_bind Domain 2 106 106 95.6 2.6e-27 1 No_clan
Cotton_A_26545_CDS 268 534 268 538 PF00069.25 Pkinase Domain 1 258 264 148.1 2.9e-43 1 CL0016
Cotton_A_19240_CDS 17 52 15 60 PF00646.33 F-box Domain 4 39 48 19.9 0.00051 1 CL0271
Cotton_A_23517_CDS 75 122 74 123 PF13041.6 PPR_2 Repeat 2 49 50 44.7 1.2e-11 1 CL0020
Cotton_A_23517_CDS 144 193 144 193 PF13041.6 PPR_2 Repeat 1 50 50 50.6 1.6e-13 1 CL0020
Cotton_A_23517_CDS 214 262 214 263 PF13041.6 PPR_2 Repeat 1 49 50 33.6 3.2e-08 1 CL0020
Cotton_A_23517_CDS 285 333 284 333 PF13041.6 PPR_2 Repeat 2 50 50 68.5 4.1e-19 1 CL0020
Cotton_A_23517_CDS 355 399 354 399 PF13041.6 PPR_2 Repeat 2 50 50 31.9 1.1e-07 1 CL0020
Cotton_A_25379_CDS 4 283 4 283 PF00069.25 Pkinase Domain 1 264 264 250.0 2.5e-74 1 CL0016
Cotton_A_13210_CDS 57 424 46 441 PF01053.20 Cys_Met_Meta_PP Domain 13 366 382 272.5 3.9e-81 1 CL0061
Cotton_A_11599_CDS 42 112 42 115 PF00141.23 peroxidase Domain 1 70 229 64.8 9.3e-18 1 CL0617
Cotton_A_30742_CDS 73 359 71 360 PF01095.19 Pectinesterase Family 3 297 298 202.5 6e-60 1 CL0268
Cotton_A_24441_CDS 56 94 56 94 PF04810.15 zf-Sec23_Sec24 Domain 1 39 39 58.6 4.6e-16 1 No_clan
Cotton_A_24441_CDS 131 208 130 243 PF04811.15 Sec23_trunk Domain 2 77 243 60.2 2.2e-16 1 CL0128
Cotton_A_24441_CDS 274 364 263 364 PF04811.15 Sec23_trunk Domain 152 243 243 83.0 2.3e-23 1 CL0128
Cotton_A_24441_CDS 375 479 374 479 PF08033.12 Sec23_BS Domain 2 96 96 104.2 4.8e-30 1 No_clan
Cotton_A_24441_CDS 493 589 493 592 PF04815.15 Sec23_helical Domain 1 100 103 79.7 1.1e-22 1 No_clan
Cotton_A_24441_CDS 605 693 603 693 PF00626.22 Gelsolin Domain 3 76 76 56.3 2.2e-15 1 CL0092
Cotton_A_11306_CDS 66 116 65 117 PF00847.20 AP2 Domain 2 53 54 52.7 3.7e-14 1 CL0081
Cotton_A_17908_CDS 28 102 27 103 PF01253.22 SUI1 Domain 2 76 77 91.8 2.9e-26 1 No_clan
Cotton_A_09268_CDS 5 96 5 122 PF18052.1 Rx_N Domain 1 84 93 68.5 4.6e-19 1 No_clan
Cotton_A_09268_CDS 173 248 172 250 PF00931.22 NB-ARC Domain 2 77 252 49.4 3.2e-13 1 CL0023
Cotton_A_23727_CDS 96 292 96 326 PF07816.11 DUF1645 Family 1 118 191 32.2 1.5e-07 1 No_clan
Cotton_A_27937_CDS 8 254 8 256 PF01370.21 Epimerase Family 1 239 241 89.9 1.6e-25 1 CL0063
Cotton_A_07881_CDS 51 144 51 157 PF14226.6 DIOX_N Family 1 98 118 92.9 2.2e-26 1 CL0029
Cotton_A_04974_CDS 33 238 33 238 PF00804.25 Syntaxin Domain 1 200 200 249.1 2.8e-74 1 CL0445
Cotton_A_04974_CDS 240 291 239 291 PF05739.19 SNARE Family 2 53 53 62.8 2.1e-17 1 No_clan
Cotton_A_07321_CDS 100 151 100 151 PF00010.26 HLH Domain 1 53 53 41.3 1.1e-10 1 No_clan
Cotton_A_16097_CDS 88 215 71 219 PF00504.21 Chloroa_b-bind Family 26 157 161 35.0 1.8e-08 1 No_clan
Cotton_A_34009_CDS 36 96 36 100 PF01221.18 Dynein_light Domain 1 63 86 74.1 8.2e-21 1 No_clan
Cotton_A_34009_CDS 104 191 97 203 PF00293.28 NUDIX Domain 25 115 131 40.4 2.7e-10 1 CL0261
Cotton_A_17508_CDS 41 181 40 186 PF00349.21 Hexokinase_1 Domain 2 140 199 116.2 1.8e-33 1 CL0108
Cotton_A_07170_CDS 22 72 9 77 PF10075.9 CSN8_PSD8_EIF3K Family 89 139 144 27.9 1.9e-06 1 CL0123
Cotton_A_35491_CDS 16 40 16 40 PF01535.20 PPR Family 7 31 31 15.6 0.014 1 CL0020
Cotton_A_35491_CDS 112 155 112 157 PF13041.6 PPR_2 Repeat 1 44 50 37.5 2e-09 1 CL0020
Cotton_A_18270_CDS 32 355 32 357 PF00067.22 p450 Domain 1 327 463 105.4 2.9e-30 1 No_clan
Cotton_A_34113_CDS 61 165 61 178 PF14226.6 DIOX_N Family 1 103 118 80.1 2.1e-22 1 CL0029
Cotton_A_34113_CDS 225 323 224 323 PF03171.20 2OG-FeII_Oxy Domain 2 101 101 101.0 4.3e-29 1 CL0029
Cotton_A_15652_CDS 50 162 50 165 PF00072.24 Response_reg Domain 1 109 112 72.3 3.4e-20 1 CL0304
Cotton_A_15652_CDS 605 646 605 648 PF06203.14 CCT Motif 1 42 44 56.5 2.1e-15 1 CL0281
Cotton_A_30326_CDS 145 328 140 330 PF00544.19 Pec_lyase_C Domain 28 209 211 74.4 9.3e-21 1 CL0268
Cotton_A_15777_CDS 44 403 42 403 PF01094.28 ANF_receptor Family 3 354 354 277.8 1.3e-82 1 CL0144
Cotton_A_15777_CDS 483 800 471 801 PF00497.20 SBP_bac_3 Domain 18 224 225 72.8 2.7e-20 1 CL0177
Cotton_A_15777_CDS 585 832 582 832 PF00060.26 Lig_chan Family 4 149 149 129.1 1.2e-37 1 CL0030
Cotton_A_02046_CDS 24 61 22 62 PF08263.12 LRRNT_2 Family 4 40 41 34.2 2.2e-08 1 No_clan
Cotton_A_02046_CDS 289 347 289 349 PF13855.6 LRR_8 Repeat 1 59 61 31.2 1.4e-07 1 CL0022
Cotton_A_02046_CDS 485 506 485 507 PF00560.33 LRR_1 Repeat 1 22 23 9.6 1.6 1 CL0022
Cotton_A_02046_CDS 648 913 646 915 PF00069.25 Pkinase Domain 3 260 264 148.0 3.2e-43 1 CL0016
Cotton_A_01621_CDS 47 443 47 443 PF00890.24 FAD_binding_2 Family 1 417 417 412.6 2e-123 1 CL0063
Cotton_A_01621_CDS 503 635 503 635 PF02910.20 Succ_DH_flav_C Domain 1 128 128 148.1 1.2e-43 1 No_clan
Cotton_A_23862_CDS 34 112 32 112 PF02298.17 Cu_bind_like Domain 3 84 84 86.9 6.6e-25 1 CL0026
Cotton_A_37540_CDS 1 87 1 90 PF12776.7 Myb_DNA-bind_3 Domain 6 93 96 63.9 2.1e-17 1 CL0123
Cotton_A_08759_CDS 31 159 28 159 PF00917.26 MATH Domain 4 113 113 37.6 2e-09 1 CL0389
Cotton_A_08759_CDS 186 308 186 308 PF00917.26 MATH Domain 1 113 113 51.1 1.3e-13 1 CL0389
Cotton_A_20462_CDS 12 172 12 173 PF00071.22 Ras Domain 1 161 162 197.1 1.4e-58 1 CL0023
Cotton_A_01714_CDS 12 73 10 74 PF13499.6 EF-hand_7 Domain 3 70 71 56.2 3.5e-15 1 CL0220
Cotton_A_01714_CDS 83 146 83 147 PF13499.6 EF-hand_7 Domain 1 70 71 66.9 1.6e-18 1 CL0220
Cotton_A_05008_CDS 322 406 308 415 PF00201.18 UDPGT Family 328 407 499 51.5 7e-14 1 CL0113
Cotton_A_11905_CDS 13 81 5 92 PF00854.21 PTR2 Family 188 253 395 34.0 1.4e-08 1 CL0015
Cotton_A_11905_CDS 102 183 82 183 PF00854.21 PTR2 Family 315 395 395 30.1 2.1e-07 1 CL0015
Cotton_A_15711_CDS 55 466 54 472 PF13520.6 AA_permease_2 Family 2 406 425 182.9 8.9e-54 1 CL0062
Cotton_A_15711_CDS 501 551 501 551 PF13906.6 AA_permease_C Domain 1 51 51 53.8 1.5e-14 1 CL0062
Cotton_A_24534_CDS 5 77 3 77 PF02798.20 GST_N Domain 3 76 76 70.7 9.8e-20 1 CL0172
Cotton_A_24534_CDS 119 189 91 190 PF13410.6 GST_C_2 Domain 6 68 69 34.3 1.8e-08 1 CL0497
Cotton_A_32039_CDS 319 366 309 368 PF00571.28 CBS Domain 8 55 57 38.3 1.4e-09 1 No_clan
Cotton_A_00548_CDS 9 53 9 53 PF03107.16 C1_2 Domain 1 47 47 40.3 2.8e-10 1 CL0006
Cotton_A_00548_CDS 73 109 59 109 PF03107.16 C1_2 Domain 11 47 47 29.4 7.2e-07 1 CL0006
Cotton_A_03905_CDS 183 433 177 433 PF07714.17 Pkinase_Tyr Domain 7 259 259 200.3 3.3e-59 1 CL0016
Cotton_A_08127_CDS 1 154 1 197 PF14009.6 DUF4228 Family 1 157 179 62.3 7.6e-17 1 No_clan
Cotton_A_02614_CDS 56 96 56 96 PF03911.16 Sec61_beta Family 1 41 41 68.2 4.5e-19 1 No_clan
Cotton_A_05259_CDS 62 359 62 360 PF02383.18 Syja_N Family 1 319 320 255.9 5.5e-76 1 CL0031
Cotton_A_05873_CDS 10 36 10 36 PF08513.11 LisH Domain 1 27 27 27.4 2.1e-06 1 CL0561
Cotton_A_05873_CDS 480 507 471 507 PF00400.32 WD40 Repeat 11 38 38 22.8 0.00012 1 CL0186
Cotton_A_05873_CDS 516 549 511 549 PF00400.32 WD40 Repeat 6 38 38 22.2 0.00018 1 CL0186
Cotton_A_05873_CDS 639 673 637 673 PF00400.32 WD40 Repeat 4 38 38 17.0 0.0081 1 CL0186
Cotton_A_05873_CDS 720 756 718 756 PF00400.32 WD40 Repeat 3 38 38 16.4 0.013 1 CL0186
Cotton_A_01018_CDS 63 206 63 206 PF01565.23 FAD_binding_4 Domain 1 139 139 69.4 2.6e-19 1 CL0077
Cotton_A_01018_CDS 238 514 238 514 PF09265.10 Cytokin-bind Domain 1 281 281 385.1 1.9e-115 1 CL0277
Cotton_A_28050_CDS 1 88 1 88 PF03351.17 DOMON Domain 42 125 125 59.7 3.2e-16 1 CL0559
Cotton_A_28050_CDS 131 259 127 264 PF03188.16 Cytochrom_B561 Family 1 131 137 29.6 6.1e-07 1 CL0328
Cotton_A_31022_CDS 78 204 78 205 PF07977.13 FabA Domain 1 137 138 117.8 2.5e-34 1 CL0050
Cotton_A_18712_CDS 85 513 67 517 PF14631.6 FancD2 Family 93 535 1417 264.3 1.8e-78 1 No_clan
Cotton_A_18712_CDS 544 765 541 775 PF14631.6 FancD2 Family 533 729 1417 38.4 2.6e-10 1 No_clan
Cotton_A_15754_CDS 48 145 48 146 PF03195.14 LOB Family 1 98 99 139.2 5.4e-41 1 No_clan
Cotton_A_31747_CDS 181 453 167 454 PF00497.20 SBP_bac_3 Domain 55 224 225 44.0 1.7e-11 1 CL0177
Cotton_A_31747_CDS 238 481 235 485 PF00060.26 Lig_chan Family 4 143 149 60.9 1.2e-16 1 CL0030
Cotton_A_39994_CDS 52 131 49 152 PF16203.5 ERCC3_RAD25_C Domain 36 114 247 107.2 7.5e-31 1 CL0023
Cotton_A_37895_CDS 321 360 316 360 PF01753.18 zf-MYND Domain 4 38 38 32.8 5.5e-08 1 CL0175
Cotton_A_23350_CDS 7 89 2 90 PF13456.6 RVT_3 Domain 29 110 124 27.0 3e-06 1 CL0219
Cotton_A_24395_CDS 1 60 1 60 PF08069.12 Ribosomal_S13_N Domain 1 60 60 110.0 4.3e-32 1 No_clan
Cotton_A_24395_CDS 74 134 70 140 PF00312.22 Ribosomal_S15 Domain 4 68 81 53.1 2.7e-14 1 CL0600
Cotton_A_09942_CDS 56 345 53 345 PF03151.16 TPT Family 4 290 290 162.3 1.5e-47 1 CL0184
Cotton_A_29642_CDS 51 287 32 289 PF13360.6 PQQ_2 Domain 28 235 237 54.6 1.1e-14 1 CL0186
Cotton_A_29642_CDS 410 488 406 503 PF13360.6 PQQ_2 Domain 5 83 237 35.5 7.6e-09 1 CL0186
Cotton_A_01596_CDS 54 147 54 147 PF14363.6 AAA_assoc Family 1 96 96 76.7 1.3e-21 1 No_clan
Cotton_A_01596_CDS 262 387 261 388 PF00004.29 AAA Domain 2 131 132 64.8 1e-17 1 CL0023
Cotton_A_38251_CDS 22 245 9 245 PF05623.12 DUF789 Family 93 294 294 230.0 4.7e-68 1 No_clan
Cotton_A_06383_CDS 19 62 18 62 PF00319.18 SRF-TF Domain 2 48 48 47.7 7.6e-13 1 No_clan
Cotton_A_20616_CDS 152 273 151 273 PF13456.6 RVT_3 Domain 2 124 124 95.1 2.5e-27 1 CL0219
Cotton_A_00255_CDS 55 138 55 144 PF03641.14 Lysine_decarbox Family 1 85 132 100.1 1e-28 1 CL0349
Cotton_A_14914_CDS 26 75 24 76 PF00010.26 HLH Domain 3 52 53 28.4 1.2e-06 1 No_clan
Cotton_A_03199_CDS 131 169 130 169 PF00400.32 WD40 Repeat 2 38 38 12.2 0.27 1 CL0186
Cotton_A_03199_CDS 179 212 173 212 PF00400.32 WD40 Repeat 7 38 38 19.2 0.0017 1 CL0186
Cotton_A_03199_CDS 225 254 217 254 PF00400.32 WD40 Repeat 9 38 38 14.6 0.045 1 CL0186
Cotton_A_03199_CDS 391 533 390 533 PF09384.10 UTP15_C Family 2 147 147 121.0 3.1e-35 1 No_clan
Cotton_A_11986_CDS 123 265 123 266 PF00394.22 Cu-oxidase Domain 1 158 159 114.8 4.1e-33 1 CL0026
Cotton_A_11986_CDS 347 462 346 462 PF07731.14 Cu-oxidase_2 Domain 2 112 137 61.8 5.3e-17 1 CL0026
Cotton_A_25585_CDS 112 246 112 246 PF00781.24 DAGK_cat Family 1 126 126 104.6 2.6e-30 1 CL0240
Cotton_A_15353_CDS 29 352 28 352 PF09752.9 DUF2048 Family 2 352 352 383.2 1.1e-114 1 CL0028
Cotton_A_27258_CDS 38 285 38 286 PF02485.21 Branch Family 1 246 247 169.0 1.2e-49 1 CL0110
Cotton_A_13232_CDS 113 398 113 403 PF03552.14 Cellulose_synt Family 1 290 722 280.5 3.2e-83 1 CL0110
Cotton_A_13232_CDS 416 739 399 745 PF03552.14 Cellulose_synt Family 384 702 722 184.0 4.9e-54 1 CL0110
Cotton_A_13371_CDS 117 219 115 220 PF03763.13 Remorin_C Family 4 106 107 85.7 1.7e-24 1 No_clan
Cotton_A_07964_CDS 2 281 2 281 PF00069.25 Pkinase Domain 1 264 264 249.1 4.8e-74 1 CL0016
Cotton_A_23794_CDS 70 174 68 174 PF14365.6 Neprosin_AP Family 5 118 118 127.3 4.2e-37 1 No_clan
Cotton_A_23794_CDS 187 409 187 409 PF03080.15 Neprosin Family 1 222 222 297.1 6.3e-89 1 No_clan
Cotton_A_18714_CDS 279 336 278 336 PF03106.15 WRKY Domain 2 59 59 85.7 1.8e-24 1 CL0274
Cotton_A_41032_CDS 4 69 3 69 PF11820.8 DUF3339 Family 2 67 67 110.0 4.7e-32 1 No_clan
Cotton_A_15047_CDS 33 402 33 403 PF12819.7 Malectin_like Domain 1 335 336 134.6 4.3e-39 1 CL0202
Cotton_A_15047_CDS 528 790 523 793 PF07714.17 Pkinase_Tyr Domain 6 256 259 162.0 1.6e-47 1 CL0016
Cotton_A_08691_CDS 12 57 12 58 PF00249.31 Myb_DNA-binding Domain 1 45 46 62.7 2.7e-17 1 CL0123
Cotton_A_08691_CDS 66 107 64 109 PF00249.31 Myb_DNA-binding Domain 3 44 46 54.3 1.1e-14 1 CL0123
Cotton_A_34503_CDS 5 69 4 70 PF13499.6 EF-hand_7 Domain 2 70 71 43.8 2.5e-11 1 CL0220
Cotton_A_34503_CDS 87 150 86 151 PF13499.6 EF-hand_7 Domain 2 70 71 38.3 1.4e-09 1 CL0220
Cotton_A_31131_CDS 134 199 134 199 PF12352.8 V-SNARE_C Domain 1 66 66 67.8 7.2e-19 1 CL0147
Cotton_A_12973_CDS 47 203 47 203 PF04862.12 DUF642 Domain 1 157 157 201.2 7.6e-60 1 CL0202
Cotton_A_12973_CDS 214 381 214 382 PF04862.12 DUF642 Domain 1 156 157 56.8 2.1e-15 1 CL0202
Cotton_A_37701_CDS 49 453 48 455 PF00860.20 Xan_ur_permease Family 2 387 389 217.4 2.5e-64 1 CL0062
Cotton_A_27920_CDS 2 58 1 60 PF14223.6 Retrotran_gag_2 Family 82 136 138 35.1 8.9e-09 1 CL0523
Cotton_A_05302_CDS 42 180 36 187 PF16166.5 TIC20 Family 7 160 181 104.5 5.3e-30 1 No_clan
Cotton_A_10721_CDS 133 219 127 219 PF12796.7 Ank_2 Repeat 15 83 83 44.0 2.5e-11 1 CL0465
Cotton_A_04623_CDS 33 297 32 297 PF00348.17 polyprenyl_synt Domain 2 256 256 305.3 2.5e-91 1 CL0613
Cotton_A_01509_CDS 47 120 47 121 PF03087.14 DUF241 Family 1 74 234 106.6 1.7e-30 1 CL0133
Cotton_A_30145_CDS 30 151 20 151 PF03151.16 TPT Family 23 144 290 151.1 4.2e-44 1 CL0184
Cotton_A_11190_CDS 5 60 3 106 PF05340.12 DUF740 Family 9 61 609 33.2 2.4e-08 1 No_clan
Cotton_A_35745_CDS 421 502 415 502 PF04433.17 SWIRM Domain 7 89 89 43.8 2.4e-11 1 CL0123
Cotton_A_35745_CDS 673 1152 672 1152 PF01593.24 Amino_oxidase Domain 2 452 452 348.9 5.7e-104 1 CL0063
Cotton_A_23227_CDS 17 131 17 132 PF15699.5 NPR1_interact Family 1 109 109 79.1 3.6e-22 1 No_clan
Cotton_A_27051_CDS 87 152 87 152 PF01106.17 NifU Family 1 67 67 91.2 3.2e-26 1 CL0232
Cotton_A_27051_CDS 168 230 168 230 PF01106.17 NifU Family 1 67 67 48.0 9.9e-13 1 CL0232
Cotton_A_05844_CDS 7 133 7 133 PF02365.15 NAM Family 1 126 126 132.2 1.9e-38 1 No_clan
Cotton_A_37714_CDS 14 176 1 176 PF00759.19 Glyco_hydro_9 Domain 273 411 411 126.4 1.9e-36 1 CL0059
Cotton_A_05530_CDS 42 178 41 178 PF02469.22 Fasciclin Domain 2 128 128 80.4 1.2e-22 1 No_clan
Cotton_A_09400_CDS 2 276 1 276 PF00332.18 Glyco_hydro_17 Domain 52 313 313 209.6 7.8e-62 1 CL0058
Cotton_A_09400_CDS 285 355 284 356 PF07983.13 X8 Domain 2 75 76 75.0 5.7e-21 1 No_clan
Cotton_A_09400_CDS 380 451 380 452 PF07983.13 X8 Domain 1 75 76 77.4 1e-21 1 No_clan
Cotton_A_39702_CDS 10 237 5 238 PF00931.22 NB-ARC Domain 17 251 252 150.8 3.9e-44 1 CL0023
Cotton_A_14534_CDS 26 344 26 344 PF00332.18 Glyco_hydro_17 Domain 1 313 313 325.7 3.6e-97 1 CL0058
Cotton_A_14534_CDS 364 435 364 436 PF07983.13 X8 Domain 1 75 76 74.9 6.2e-21 1 No_clan
Cotton_A_05899_CDS 28 346 26 353 PF00743.19 FMO-like Family 6 335 532 107.3 6.9e-31 1 CL0063
Cotton_A_11056_CDS 111 178 111 178 PF00498.26 FHA Family 1 69 69 53.7 2e-14 1 CL0357
Cotton_A_11559_CDS 29 146 21 147 PF16036.5 Chalcone_3 Domain 50 162 165 27.2 3.5e-06 1 CL0560
Cotton_A_35696_CDS 6 75 6 78 PF04564.15 U-box Domain 1 69 73 71.9 3.5e-20 1 CL0229
Cotton_A_26636_CDS 135 228 135 237 PF04266.14 ASCH Domain 1 95 107 39.7 5.8e-10 1 CL0178
Cotton_A_27981_CDS 125 588 125 589 PF03055.15 RPE65 Family 1 462 463 372.7 3.4e-111 1 No_clan
Cotton_A_21243_CDS 75 261 72 262 PF00664.23 ABC_membrane Family 86 273 274 131.4 4.8e-38 1 CL0241
Cotton_A_21243_CDS 329 453 329 459 PF00005.27 ABC_tran Domain 1 111 137 68.1 1e-18 1 CL0023
Cotton_A_32825_CDS 108 222 108 222 PF03556.15 Cullin_binding Family 1 120 120 84.9 5.4e-24 1 CL0220
Cotton_A_05399_CDS 152 386 152 440 PF00069.25 Pkinase Domain 1 212 264 60.6 1.5e-16 1 CL0016
Cotton_A_29442_CDS 43 103 43 104 PF13921.6 Myb_DNA-bind_6 Domain 1 59 60 58.3 6.5e-16 1 CL0123
Cotton_A_03442_CDS 241 291 241 291 PF14237.6 GYF_2 Domain 1 50 50 39.6 3.4e-10 1 CL0673
Cotton_A_05059_CDS 124 209 122 212 PF00153.27 Mito_carr Family 3 94 97 62.7 2.3e-17 1 No_clan
Cotton_A_05059_CDS 218 304 215 307 PF00153.27 Mito_carr Family 4 94 97 65.8 2.5e-18 1 No_clan
Cotton_A_05059_CDS 331 417 329 420 PF00153.27 Mito_carr Family 3 93 97 64.7 5.6e-18 1 No_clan
Cotton_A_13545_CDS 29 422 28 428 PF01490.18 Aa_trans Family 2 404 409 249.3 5.6e-74 1 CL0062
Cotton_A_09723_CDS 16 63 16 63 PF00249.31 Myb_DNA-binding Domain 1 46 46 60.2 1.6e-16 1 CL0123
Cotton_A_09723_CDS 69 123 69 124 PF00249.31 Myb_DNA-binding Domain 1 45 46 48.9 5.5e-13 1 CL0123
Cotton_A_14877_CDS 39 362 17 362 PF00225.23 Kinesin Domain 32 333 333 346.4 1.4e-103 1 CL0023
Cotton_A_27334_CDS 105 199 105 206 PF00069.25 Pkinase Domain 1 93 264 78.1 6.9e-22 1 CL0016
Cotton_A_08419_CDS 138 262 125 262 PF07039.11 DUF1325 Domain 12 132 132 111.7 2.6e-32 1 CL0049
Cotton_A_09097_CDS 18 475 14 479 PF02458.15 Transferase Family 4 429 434 197.5 3e-58 1 CL0149
Cotton_A_15381_CDS 119 220 118 221 PF00237.19 Ribosomal_L22 Domain 2 102 103 82.3 2.4e-23 1 No_clan
Cotton_A_03244_CDS 178 324 178 346 PF00305.19 Lipoxygenase Domain 1 145 674 109.1 2.1e-31 1 No_clan
Cotton_A_03244_CDS 354 652 348 658 PF00305.19 Lipoxygenase Domain 121 445 674 289.5 5.5e-86 1 No_clan
Cotton_A_17536_CDS 9 168 1 168 PF14009.6 DUF4228 Family 4 179 179 111.4 6.5e-32 1 No_clan
Cotton_A_15209_CDS 191 250 188 259 PF00152.20 tRNA-synt_2 Domain 5 64 314 32.7 4.1e-08 1 CL0040
Cotton_A_15209_CDS 337 607 307 608 PF00152.20 tRNA-synt_2 Domain 69 313 314 136.8 8e-40 1 CL0040
Cotton_A_20604_CDS 7 97 5 99 PF17292.2 POB3_N Domain 3 91 93 81.2 5.6e-23 1 CL0266
Cotton_A_20604_CDS 106 174 106 175 PF03531.14 SSrecog Domain 1 68 69 85.6 1.5e-24 1 CL0266
Cotton_A_20604_CDS 350 439 349 440 PF08512.12 Rtt106 Domain 2 88 89 75.6 3.1e-21 1 CL0266
Cotton_A_20604_CDS 561 627 561 629 PF00505.19 HMG_box Domain 1 67 69 75.4 3.5e-21 1 CL0114
Cotton_A_32383_CDS 219 256 218 256 PF00400.32 WD40 Repeat 2 38 38 13.8 0.083 1 CL0186
Cotton_A_28971_CDS 42 76 42 76 PF10559.9 Plug_translocon Domain 1 35 35 65.7 2.4e-18 1 No_clan
Cotton_A_28971_CDS 77 200 77 232 PF00344.20 SecY Family 1 115 306 102.0 3.6e-29 1 No_clan
Cotton_A_36190_CDS 15 155 14 163 PF00582.26 Usp Domain 5 133 141 30.3 5.1e-07 1 CL0039
Cotton_A_36190_CDS 491 742 489 751 PF00069.25 Pkinase Domain 3 253 264 138.2 3e-40 1 CL0016
Cotton_A_03211_CDS 14 106 14 109 PF13943.6 WPP Domain 1 95 99 108.8 1.4e-31 1 No_clan
Cotton_A_03211_CDS 211 231 210 232 PF13516.6 LRR_6 Repeat 3 23 24 16.7 0.0055 1 CL0022
Cotton_A_03211_CDS 322 344 321 344 PF13516.6 LRR_6 Repeat 2 24 24 11.1 0.34 1 CL0022
Cotton_A_03211_CDS 380 400 378 401 PF13516.6 LRR_6 Repeat 3 23 24 10.2 0.65 1 CL0022
Cotton_A_03211_CDS 407 429 406 429 PF13516.6 LRR_6 Repeat 2 24 24 17.9 0.0022 1 CL0022
Cotton_A_17986_CDS 21 65 21 66 PF12734.7 CYSTM Family 1 41 42 24.8 2e-05 1 No_clan
Cotton_A_17986_CDS 113 196 112 205 PF03168.13 LEA_2 Domain 2 89 101 33.6 4.4e-08 1 CL0159
Cotton_A_39996_CDS 30 148 29 152 PF00329.19 Complex1_30kDa Family 2 118 122 113.6 8.3e-33 1 No_clan
Cotton_A_28813_CDS 18 331 15 333 PF03016.15 Exostosin Family 4 298 300 214.5 1.9e-63 1 No_clan
Cotton_A_08820_CDS 110 156 107 156 PF00010.26 HLH Domain 4 53 53 40.7 1.7e-10 1 No_clan
Cotton_A_25177_CDS 14 92 14 96 PF07011.11 Elf4 Domain 1 79 83 134.3 1e-39 1 No_clan
Cotton_A_30835_CDS 89 132 88 132 PF13639.6 zf-RING_2 Domain 2 44 44 46.1 4.4e-12 1 CL0229
Cotton_A_28760_CDS 10 142 5 143 PF00179.26 UQ_con Domain 6 139 140 134.9 1.5e-39 1 CL0208
Cotton_A_29128_CDS 101 144 100 144 PF13639.6 zf-RING_2 Domain 2 44 44 49.7 3.4e-13 1 CL0229
Cotton_A_41194_CDS 14 132 13 132 PF00903.25 Glyoxalase Domain 2 128 128 44.3 1.9e-11 1 CL0104
Cotton_A_23537_CDS 7 41 7 53 PF12937.7 F-box-like Domain 1 34 48 27.5 2.2e-06 1 CL0271
Cotton_A_10459_CDS 179 302 178 307 PF02338.19 OTU Family 2 118 127 78.7 5.2e-22 1 CL0125
Cotton_A_33123_CDS 86 454 78 455 PF00067.22 p450 Domain 28 406 463 203.4 5.7e-60 1 No_clan
Cotton_A_27179_CDS 66 340 66 340 PF00664.23 ABC_membrane Family 1 274 274 213.3 5.2e-63 1 CL0241
Cotton_A_27179_CDS 409 556 407 556 PF00005.27 ABC_tran Domain 3 137 137 119.9 1.1e-34 1 CL0023
Cotton_A_27179_CDS 701 971 700 972 PF00664.23 ABC_membrane Family 2 273 274 203.2 6.2e-60 1 CL0241
Cotton_A_27179_CDS 1039 1189 1039 1189 PF00005.27 ABC_tran Domain 1 137 137 122.8 1.4e-35 1 CL0023
Cotton_A_18494_CDS 177 342 177 346 PF00929.24 RNase_T Family 1 161 165 68.5 9.4e-19 1 CL0219
Cotton_A_03692_CDS 46 453 45 453 PF09751.9 Es2 Family 2 431 431 340.2 3.2e-101 1 No_clan
Cotton_A_33828_CDS 14 41 14 43 PF01535.20 PPR Family 1 28 31 16.0 0.01 1 CL0020
Cotton_A_33828_CDS 114 144 113 145 PF13041.6 PPR_2 Repeat 2 32 50 32.6 6.9e-08 1 CL0020
Cotton_A_33828_CDS 145 191 144 192 PF13041.6 PPR_2 Repeat 2 48 50 41.1 1.5e-10 1 CL0020
Cotton_A_33828_CDS 245 293 245 294 PF13041.6 PPR_2 Repeat 1 49 50 48.0 1e-12 1 CL0020
Cotton_A_33828_CDS 321 343 318 347 PF01535.20 PPR Family 4 26 31 19.0 0.0011 1 CL0020
Cotton_A_33828_CDS 347 394 346 395 PF13041.6 PPR_2 Repeat 2 49 50 38.0 1.4e-09 1 CL0020
Cotton_A_33828_CDS 421 445 420 447 PF01535.20 PPR Family 2 26 31 19.3 0.00095 1 CL0020
Cotton_A_33828_CDS 520 644 520 644 PF14432.6 DYW_deaminase Family 1 127 127 138.1 1.4e-40 1 CL0109
Cotton_A_33873_CDS 2 84 1 89 PF00420.24 Oxidored_q2 Family 8 102 105 44.9 6.8e-12 1 No_clan
Cotton_A_22108_CDS 15 62 15 62 PF00319.18 SRF-TF Domain 1 48 48 86.8 4.6e-25 1 No_clan
Cotton_A_22542_CDS 6 315 3 354 PF00743.19 FMO-like Family 4 331 532 83.1 1.5e-23 1 CL0063
Cotton_A_27749_CDS 85 179 85 179 PF17919.1 RT_RNaseH_2 Domain 1 100 100 100.7 3.8e-29 1 CL0219
Cotton_A_09396_CDS 1 49 1 67 PF06219.12 DUF1005 Family 1 49 437 46.3 3.1e-12 1 No_clan
Cotton_A_29802_CDS 2 96 1 97 PF16639.5 Apocytochr_F_N Domain 28 122 155 123.2 1.1e-35 1 No_clan
Cotton_A_28385_CDS 36 132 36 133 PF14363.6 AAA_assoc Family 1 95 96 53.3 2.7e-14 1 No_clan
Cotton_A_28385_CDS 243 384 242 385 PF00004.29 AAA Domain 2 131 132 64.6 1.2e-17 1 CL0023
Cotton_A_11977_CDS 2 31 1 32 PF05627.11 AvrRpt-cleavage Domain 6 36 37 30.6 1.5e-07 1 No_clan
Cotton_A_24540_CDS 195 311 194 313 PF00651.31 BTB Domain 2 109 111 83.8 9.5e-24 1 CL0033
Cotton_A_29432_CDS 60 115 58 115 PF13855.6 LRR_8 Repeat 6 61 61 36.5 3.1e-09 1 CL0022
Cotton_A_29432_CDS 129 145 128 154 PF00560.33 LRR_1 Repeat 2 18 23 10.4 0.83 1 CL0022
Cotton_A_36132_CDS 291 438 286 451 PF00160.21 Pro_isomerase Domain 10 141 158 51.5 1.3e-13 1 CL0475
Cotton_A_00912_CDS 86 131 85 131 PF13639.6 zf-RING_2 Domain 2 44 44 35.3 1.1e-08 1 CL0229
Cotton_A_00912_CDS 278 461 278 462 PF00092.28 VWA Domain 1 174 175 90.7 1.3e-25 1 CL0128
Cotton_A_00912_CDS 628 700 628 701 PF14624.6 Vwaint Domain 1 69 70 75.9 2e-21 1 No_clan
Cotton_A_11733_CDS 46 120 45 120 PF01066.21 CDP-OH_P_transf Family 2 66 66 63.6 2.2e-17 1 No_clan
Cotton_A_07770_CDS 152 186 151 186 PF05553.11 DUF761 Family 2 36 36 52.1 3.4e-14 1 No_clan
Cotton_A_36578_CDS 3 80 1 80 PF04520.13 Senescence_reg Family 84 168 168 74.5 1.8e-20 1 No_clan
Cotton_A_02734_CDS 12 75 12 75 PF08031.12 BBE Domain 1 46 46 80.2 8.2e-23 1 CL0277
Cotton_A_40910_CDS 1 61 1 63 PF02359.18 CDC48_N Domain 24 84 85 59.5 2.6e-16 1 CL0332
Cotton_A_40910_CDS 82 145 80 146 PF02933.17 CDC48_2 Domain 3 63 64 45.1 6.3e-12 1 CL0402
Cotton_A_40910_CDS 195 324 195 325 PF00004.29 AAA Domain 1 131 132 163.4 3.3e-48 1 CL0023
Cotton_A_40910_CDS 348 388 347 391 PF17862.1 AAA_lid_3 Domain 2 42 45 52.6 2.8e-14 1 CL0671
Cotton_A_40910_CDS 468 601 468 601 PF00004.29 AAA Domain 1 132 132 159.4 5.8e-47 1 CL0023
Cotton_A_40910_CDS 623 663 623 668 PF17862.1 AAA_lid_3 Domain 1 40 45 48.3 6.5e-13 1 CL0671
Cotton_A_14975_CDS 232 313 217 313 PF01841.19 Transglut_core Family 16 112 112 47.3 2.4e-12 1 CL0125
Cotton_A_26754_CDS 5 254 3 257 PF02458.15 Transferase Family 3 267 434 177.7 3.1e-52 1 CL0149
Cotton_A_26754_CDS 255 315 251 316 PF02458.15 Transferase Family 371 433 434 43.3 1.9e-11 1 CL0149
Cotton_A_20452_CDS 19 110 18 113 PF01412.18 ArfGap Domain 21 114 117 69.5 2.5e-19 1 No_clan
Cotton_A_07540_CDS 52 161 26 162 PF01161.20 PBP Domain 13 131 132 53.9 2.1e-14 1 No_clan
Cotton_A_24138_CDS 2 360 2 361 PF08610.10 Pex16 Family 1 323 324 244.1 2e-72 1 No_clan
Cotton_A_05271_CDS 10 41 10 41 PF03604.13 DNA_RNApol_7kD Domain 1 32 32 63.4 1.1e-17 1 CL0167
Cotton_A_36873_CDS 7 41 7 42 PF00320.27 GATA Domain 1 35 36 51.3 6.5e-14 1 CL0167
Cotton_A_36873_CDS 279 365 274 407 PF13919.6 ASXH Domain 6 106 139 46.0 5.1e-12 1 No_clan
Cotton_A_24916_CDS 109 270 109 303 PF16923.5 Glyco_hydro_63N Domain 1 162 227 143.6 9.6e-42 1 No_clan
Cotton_A_24916_CDS 350 846 348 846 PF03200.16 Glyco_hydro_63 Domain 3 491 491 739.4 1.8e-222 1 CL0059
Cotton_A_07081_CDS 18 40 17 40 PF01754.16 zf-A20 Family 2 24 24 44.4 1.2e-11 1 No_clan
Cotton_A_07081_CDS 112 148 112 149 PF01428.16 zf-AN1 Family 1 39 40 40.7 1.9e-10 1 No_clan
Cotton_A_10821_CDS 39 70 37 71 PF08263.12 LRRNT_2 Family 6 40 41 20.9 0.00032 1 No_clan
Cotton_A_10821_CDS 153 213 153 213 PF13855.6 LRR_8 Repeat 1 61 61 36.5 2.9e-09 1 CL0022
Cotton_A_10821_CDS 226 285 225 285 PF13855.6 LRR_8 Repeat 2 61 61 33.3 3.1e-08 1 CL0022
Cotton_A_10821_CDS 526 743 521 801 PF07714.17 Pkinase_Tyr Domain 6 221 259 69.0 3.8e-19 1 CL0016
Cotton_A_13943_CDS 1 356 1 356 PF00888.22 Cullin Family 266 618 618 394.2 1.2e-117 1 No_clan
Cotton_A_13943_CDS 383 445 383 445 PF10557.9 Cullin_Nedd8 Domain 1 63 63 89.2 1.3e-25 1 CL0123
Cotton_A_13960_CDS 3 81 1 93 PF09420.10 Nop16 Family 1 69 210 28.0 2e-06 1 No_clan
Cotton_A_13960_CDS 102 181 82 181 PF09420.10 Nop16 Family 124 210 210 65.7 6e-18 1 No_clan
Cotton_A_32236_CDS 7 331 7 331 PF00656.22 Peptidase_C14 Domain 1 248 248 174.6 3.4e-51 1 CL0093
Cotton_A_10950_CDS 10 57 10 57 PF00319.18 SRF-TF Domain 1 48 48 93.2 4.6e-27 1 No_clan
Cotton_A_10950_CDS 82 169 78 170 PF01486.17 K-box Family 4 92 93 93.2 8.1e-27 1 No_clan
Cotton_A_12825_CDS 25 567 24 567 PF06101.11 Vps62 Family 2 542 542 882.5 8.6e-266 1 No_clan
Cotton_A_40306_CDS 142 338 141 338 PF03924.13 CHASE Domain 2 188 188 119.9 1.2e-34 1 CL0165
Cotton_A_40306_CDS 426 491 426 491 PF00512.25 HisKA Domain 1 67 67 62.1 3.8e-17 1 CL0025
Cotton_A_40306_CDS 538 695 538 697 PF02518.26 HATPase_c Domain 1 110 112 100.7 6.6e-29 1 CL0025
Cotton_A_40306_CDS 873 944 873 949 PF00072.24 Response_reg Domain 1 72 112 53.8 1.9e-14 1 CL0304
Cotton_A_28610_CDS 41 283 41 284 PF00141.23 peroxidase Domain 1 228 229 246.0 3.7e-73 1 CL0617
Cotton_A_28610_CDS 338 584 334 584 PF00141.23 peroxidase Domain 2 229 229 243.7 1.9e-72 1 CL0617
Cotton_A_21296_CDS 6 56 1 57 PF00083.24 Sugar_tr Family 399 450 452 31.7 7.3e-08 1 CL0015
Cotton_A_04902_CDS 76 125 75 125 PF13639.6 zf-RING_2 Domain 2 44 44 34.2 2.3e-08 1 CL0229
Cotton_A_04902_CDS 294 382 285 383 PF13519.6 VWA_2 Domain 23 106 107 29.1 1.2e-06 1 CL0128
Cotton_A_30011_CDS 22 89 22 91 PF00076.22 RRM_1 Domain 1 67 70 47.7 1e-12 1 CL0221
Cotton_A_30011_CDS 115 179 115 186 PF00076.22 RRM_1 Domain 1 63 70 56.9 1.3e-15 1 CL0221
Cotton_A_30011_CDS 236 299 236 300 PF00076.22 RRM_1 Domain 1 69 70 73.0 1.2e-20 1 CL0221
Cotton_A_08534_CDS 16 190 16 201 PF01195.19 Pept_tRNA_hydro Domain 1 162 171 172.0 1e-50 1 No_clan
Cotton_A_18178_CDS 138 515 137 516 PF01490.18 Aa_trans Family 2 408 409 187.0 4.7e-55 1 CL0062
Cotton_A_16047_CDS 96 179 92 182 PF07714.17 Pkinase_Tyr Domain 5 87 259 50.7 1.5e-13 1 CL0016
Cotton_A_16047_CDS 180 274 178 274 PF07714.17 Pkinase_Tyr Domain 181 259 259 24.8 1.1e-05 1 CL0016
Cotton_A_24834_CDS 81 346 57 349 PF00481.21 PP2C Family 34 255 258 122.0 3.3e-35 1 CL0238
Cotton_A_34377_CDS 300 705 300 706 PF07990.12 NABP Domain 1 387 388 503.0 7.8e-151 1 No_clan
Cotton_A_34377_CDS 708 738 707 741 PF00806.19 PUF Repeat 2 32 35 26.0 4.8e-06 1 CL0020
Cotton_A_34377_CDS 751 774 744 776 PF00806.19 PUF Repeat 9 32 35 25.4 7.1e-06 1 CL0020
Cotton_A_34377_CDS 779 809 779 813 PF00806.19 PUF Repeat 1 31 35 26.6 3.1e-06 1 CL0020
Cotton_A_34377_CDS 824 848 815 849 PF00806.19 PUF Repeat 10 34 35 26.2 4.2e-06 1 CL0020
Cotton_A_34377_CDS 852 882 851 883 PF00806.19 PUF Repeat 2 32 35 35.0 6.3e-09 1 CL0020
Cotton_A_34377_CDS 889 921 888 922 PF00806.19 PUF Repeat 2 34 35 28.3 9e-07 1 CL0020
Cotton_A_34377_CDS 925 952 924 958 PF00806.19 PUF Repeat 2 29 35 21.9 9.2e-05 1 CL0020
Cotton_A_34377_CDS 974 1000 971 1000 PF00806.19 PUF Repeat 9 35 35 29.2 4.4e-07 1 CL0020
Cotton_A_40982_CDS 18 178 18 190 PF00875.18 DNA_photolyase Domain 1 150 164 126.5 9.3e-37 1 CL0039
Cotton_A_40982_CDS 306 502 304 504 PF03441.14 FAD_binding_7 Domain 3 200 202 252.4 2.5e-75 1 No_clan
Cotton_A_16310_CDS 101 559 64 559 PF00501.28 AMP-binding Family 17 423 423 349.3 2.4e-104 1 CL0378
Cotton_A_09167_CDS 4 95 2 97 PF00153.27 Mito_carr Family 5 94 97 62.4 2.8e-17 1 No_clan
Cotton_A_09167_CDS 102 199 100 202 PF00153.27 Mito_carr Family 3 93 97 73.5 9.8e-21 1 No_clan
Cotton_A_09167_CDS 214 295 208 297 PF00153.27 Mito_carr Family 9 92 97 75.7 2e-21 1 No_clan
Cotton_A_38155_CDS 42 170 41 184 PF04652.16 Vta1 Family 2 129 145 69.9 2.1e-19 1 No_clan
Cotton_A_18269_CDS 95 524 95 531 PF00854.21 PTR2 Family 1 389 395 320.2 1.6e-95 1 CL0015
Cotton_A_01547_CDS 18 220 17 220 PF00141.23 peroxidase Domain 2 229 229 148.1 3e-43 1 CL0617
Cotton_A_38506_CDS 83 225 83 227 PF07200.13 Mod_r Domain 1 142 146 110.1 9.9e-32 1 CL0596
Cotton_A_16995_CDS 17 291 16 294 PF13621.6 Cupin_8 Domain 2 251 254 164.7 3.2e-48 1 CL0029