Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold1475.5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 534

Length: 891
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30


Found at i:794 original size:15 final size:15

Alignment explanation


    Indices: 774--804  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        764 TAAAAATGTC

                    *      
        774 CAAAATGAGGAAGCT
          1 CAAAATGAAGAAGCT

                           
        789 CAAAATGAAGAAGCT
          1 CAAAATGAAGAAGCT

             
        804 C
          1 C

        805 CAAACGAAAT


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13


Consensus pattern (15 bp):   
CAAAATGAAGAAGCT
Done.