Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold150.27

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6300
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27


Found at i:5664 original size:18 final size:18

Alignment explanation


    Indices: 5641--5677  Score: 74
    Period size: 18  Copynumber: 2.1  Consensus size: 18

       5631 CCTCCCTGAT

                              
       5641 ACGGAGGATTCTCCAGTG
          1 ACGGAGGATTCTCCAGTG

                              
       5659 ACGGAGGATTCTCCAGTG
          1 ACGGAGGATTCTCCAGTG

             
       5677 A
          1 A

       5678 TTCCAGAAAG


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   19  1.00

ACGTcount: A:0.24, C:0.22, G:0.32, T:0.22


Consensus pattern (18 bp):   
ACGGAGGATTCTCCAGTG
Done.