Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold153.106

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 606

Length: 1011
ACGTcount: A:0.27, C:0.24, G:0.28, T:0.21


Found at i:925 original size:30 final size:30

Alignment explanation


    Indices: 889--955  Score: 98
    Period size: 30  Copynumber: 2.2  Consensus size: 30

        879 CCACAGCCGC

                              *           
        889 AGCCCTAGCCCAATCCCGGGGGATGACAGG
          1 AGCCCTAGCCCAATCCCGAGGGATGACAGG

                        * *            *  
        919 AGCCCTAGCCCACTGCCGAGGGATGACCGG
          1 AGCCCTAGCCCAATCCCGAGGGATGACAGG

                   
        949 AGCCCTA
          1 AGCCCTA

        956 TTTATGATGA


Statistics
Matches: 33,  Mismatches: 4, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  30   33  1.00

ACGTcount: A:0.22, C:0.36, G:0.31, T:0.10


Consensus pattern (30 bp):   
AGCCCTAGCCCAATCCCGAGGGATGACAGG
Done.