Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold103.118

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 469

Length: 783
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.28


Found at i:464 original size:3 final size:3

Alignment explanation


    Indices: 456--503  Score: 51
    Period size: 3  Copynumber: 16.0  Consensus size: 3

        446 CCTCTTGTTT

                                *         *      *       *          *      
        456 ATC ATC ATC ATC ATC TTC ATC ATT ATC ACC ATC ACC ATC ATC TTC ATC
          1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC

        504 CTCGACCTCA


Statistics
Matches: 35,  Mismatches: 10, Indels: 0
        0.78            0.22        0.00

Matches are distributed among these distances:
   3   35  1.00

ACGTcount: A:0.29, C:0.35, G:0.00, T:0.35


Consensus pattern (3 bp):   
ATC

Done.