Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold156.139

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 361

Length: 603
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27


Found at i:444 original size:3 final size:3

Alignment explanation


    Indices: 431--470  Score: 71
    Period size: 3  Copynumber: 13.0  Consensus size: 3

        421 GAGGAACTTG

                                                                
        431 AGA AGGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
          1 AGA A-GA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA

        471 GGTTGGAGGG


Statistics
Matches: 36,  Mismatches: 0, Indels: 2
        0.95            0.00        0.05

Matches are distributed among these distances:
   3   33  0.92
   4    3  0.08

ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00


Consensus pattern (3 bp):   
AGA

Done.