Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold156.296

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 331

Length: 552
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24


Found at i:340 original size:3 final size:3

Alignment explanation


    Indices: 329--365  Score: 65
    Period size: 3  Copynumber: 12.0  Consensus size: 3

        319 GACGACGATG

                                                            
        329 AGA AGGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
          1 AGA A-GA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA

        366 TGTTGAAGAT


Statistics
Matches: 33,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
   3   30  0.91
   4    3  0.09

ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00


Consensus pattern (3 bp):   
AGA

Done.