Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold16.35

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 660

Length: 1101
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.25


Found at i:330 original size:9 final size:8

Alignment explanation


    Indices: 311--344  Score: 50
    Period size: 9  Copynumber: 4.0  Consensus size: 8

        301 CAGCAGGAAC

                    
        311 AAGAAAAG
          1 AAGAAAAG

                     
        319 AAGAAGAAG
          1 AAGAA-AAG

                     
        328 AAGAAAAAG
          1 AAG-AAAAG

                    
        337 AAGAAAAG
          1 AAGAAAAG

        345 TAGTAAACTT


Statistics
Matches: 24,  Mismatches: 0, Indels: 4
        0.86            0.00        0.14

Matches are distributed among these distances:
   8   10  0.42
   9   12  0.50
  10    2  0.08

ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00


Consensus pattern (8 bp):   
AAGAAAAG
Done.