Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold167.94

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1821
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26


Found at i:1294 original size:15 final size:15

Alignment explanation


    Indices: 1257--1295  Score: 69
    Period size: 15  Copynumber: 2.6  Consensus size: 15

       1247 CCTCTATGAA

                   *       
       1257 TGGTGGCGTAAAATC
          1 TGGTGGCTTAAAATC

                           
       1272 TGGTGGCTTAAAATC
          1 TGGTGGCTTAAAATC

                     
       1287 TGGTGGCTT
          1 TGGTGGCTT

       1296 CACATCAGGG


Statistics
Matches: 23,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  15   23  1.00

ACGTcount: A:0.21, C:0.13, G:0.33, T:0.33


Consensus pattern (15 bp):   
TGGTGGCTTAAAATC

Found at i:1731 original size:21 final size:24

Alignment explanation


    Indices: 1681--1737  Score: 78
    Period size: 24  Copynumber: 2.4  Consensus size: 24

       1671 TCAGCCACTA

                       *         *  
       1681 CAGCAGCCACAGTCTCAGTCTTTG
          1 CAGCAGCCACAATCTCAGTCTCTG

                              *   * 
       1705 CAGCAGCCACAATCTCAGCCTCAG
          1 CAGCAGCCACAATCTCAGTCTCTG

                     
       1729 CAGCAGCCA
          1 CAGCAGCCA

       1738 ACCACCGGAG


Statistics
Matches: 29,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  24   29  1.00

ACGTcount: A:0.26, C:0.39, G:0.19, T:0.16


Consensus pattern (24 bp):   
CAGCAGCCACAATCTCAGTCTCTG
Done.