Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold167.181

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3282
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26


Found at i:1378 original size:105 final size:105

Alignment explanation


    Indices: 1196--1416  Score: 415
    Period size: 105  Copynumber: 2.1  Consensus size: 105

       1186 AGAGGTCATC

                                                    *                        
       1196 AAGATCTTGAAGCAAAACAGAAGCATTATGAAGAATGCTTTAGAGAAATCAAATTGAAAGAGAAG
          1 AAGATCTTGAAGCAAAACAGAAGCATTATGAAGAATGCTTGAGAGAAATCAAATTGAAAGAGAAG

                          *                         
       1261 CAAATAGAAAAATCGTATGAGGAACTGGCAAAACAGAACA
         66 CAAATAGAAAAATCATATGAGGAACTGGCAAAACAGAACA

                                *                                            
       1301 AAGATCTTGAAGCAAAACAGGAGCATTATGAAGAATGCTTGAGAGAAATCAAATTGAAAGAGAAG
          1 AAGATCTTGAAGCAAAACAGAAGCATTATGAAGAATGCTTGAGAGAAATCAAATTGAAAGAGAAG

                                                    
       1366 CAAATAGAAAAATCATATGAGGAACTGGCAAAACAGAACA
         66 CAAATAGAAAAATCATATGAGGAACTGGCAAAACAGAACA

                       
       1406 AAGATCTTGAA
          1 AAGATCTTGAA

       1417 TTTAATGTTC


Statistics
Matches: 113,  Mismatches: 3, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
 105  113  1.00

ACGTcount: A:0.50, C:0.11, G:0.21, T:0.17


Consensus pattern (105 bp):   
AAGATCTTGAAGCAAAACAGAAGCATTATGAAGAATGCTTGAGAGAAATCAAATTGAAAGAGAAG
CAAATAGAAAAATCATATGAGGAACTGGCAAAACAGAACA

Done.