Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold167.547

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 696

Length: 1161
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25


Found at i:58 original size:18 final size:17

Alignment explanation


    Indices: 9--56  Score: 51
    Period size: 18  Copynumber: 2.6  Consensus size: 17

          1 ATGGAGTT

                          *    
          9 CCAAACCCAAAACAACAAA
          1 CCAAA-CCAAAAC-TCAAA

                             
         28 CCAAACCAAAACTCAAA
          1 CCAAACCAAAACTCAAA

                        
         45 CTCAAACTCAAA
          1 C-CAAAC-CAAA

         57 CTTAGAAACA


Statistics
Matches: 26,  Mismatches: 1, Indels: 4
        0.84            0.03        0.13

Matches are distributed among these distances:
  17    5  0.19
  18   12  0.46
  19    9  0.35

ACGTcount: A:0.58, C:0.35, G:0.00, T:0.06


Consensus pattern (17 bp):   
CCAAACCAAAACTCAAA
Done.