Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold168.138

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4998
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.26


Found at i:2474 original size:36 final size:36

Alignment explanation


    Indices: 2427--2499  Score: 146
    Period size: 36  Copynumber: 2.0  Consensus size: 36

       2417 AGAATGCAGA

                                                
       2427 TATTCCATTTGCTCCAAGGTCTGATGAAGATTCTTC
          1 TATTCCATTTGCTCCAAGGTCTGATGAAGATTCTTC

                                                
       2463 TATTCCATTTGCTCCAAGGTCTGATGAAGATTCTTC
          1 TATTCCATTTGCTCCAAGGTCTGATGAAGATTCTTC

             
       2499 T
          1 T

       2500 CGAATGCATG


Statistics
Matches: 37,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  36   37  1.00

ACGTcount: A:0.22, C:0.22, G:0.16, T:0.40


Consensus pattern (36 bp):   
TATTCCATTTGCTCCAAGGTCTGATGAAGATTCTTC
Done.