Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold169.126

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 406

Length: 678
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.25


Found at i:206 original size:30 final size:30

Alignment explanation


    Indices: 145--206  Score: 79
    Period size: 30  Copynumber: 2.1  Consensus size: 30

        135 ACCTCCTACT

                             *     *  *   
        145 CCACCTTATGAGTATAAGTCGCCTCCGCCA
          1 CCACCTTATGAGTATAAATCGCCACCACCA

                      *         *         
        175 CCACCTTATGTGTATAAATCTCCACCACCA
          1 CCACCTTATGAGTATAAATCGCCACCACCA

              
        205 CC
          1 CC

        207 TTCGCCTTCT


Statistics
Matches: 27,  Mismatches: 5, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  30   27  1.00

ACGTcount: A:0.26, C:0.39, G:0.11, T:0.24


Consensus pattern (30 bp):   
CCACCTTATGAGTATAAATCGCCACCACCA
Done.