Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold173.56

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 680

Length: 1134
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.29


Found at i:519 original size:6 final size:6

Alignment explanation


    Indices: 499--537  Score: 51
    Period size: 6  Copynumber: 6.5  Consensus size: 6

        489 CAATGCTTTT

                       *  *      *                       
        499 AAAGCA AAAGTA GAAGCA GAAGCA AAAGCA AAAGCA AAA
          1 AAAGCA AAAGCA AAAGCA AAAGCA AAAGCA AAAGCA AAA

        538 CAACCAAAAT


Statistics
Matches: 29,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
   6   29  1.00

ACGTcount: A:0.64, C:0.13, G:0.21, T:0.03


Consensus pattern (6 bp):   
AAAGCA

Done.