Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold1797.4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 473

Length: 789
ACGTcount: A:0.35, C:0.26, G:0.20, T:0.19


Found at i:773 original size:21 final size:21

Alignment explanation


    Indices: 743--782  Score: 62
    Period size: 21  Copynumber: 1.9  Consensus size: 21

        733 AGGTACAACC

                      *          
        743 AGAACCAAGAGGAGTTCGAAG
          1 AGAACCAAGAAGAGTTCGAAG

                 *             
        764 AGAACGAAGAAGAGTTCGA
          1 AGAACCAAGAAGAGTTCGA

        783 GCCCTGA


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  21   17  1.00

ACGTcount: A:0.45, C:0.12, G:0.33, T:0.10


Consensus pattern (21 bp):   
AGAACCAAGAAGAGTTCGAAG
Done.