Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold1797.4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 473

Length: 789
ACGTcount: A:0.35, C:0.26, G:0.20, T:0.19


Found at i:773 original size:21 final size:21

Alignment explanation

Indices: 743--782 Score: 62 Period size: 21 Copynumber: 1.9 Consensus size: 21 733 AGGTACAACC * 743 AGAACCAAGAGGAGTTCGAAG 1 AGAACCAAGAAGAGTTCGAAG * 764 AGAACGAAGAAGAGTTCGA 1 AGAACCAAGAAGAGTTCGA 783 GCCCTGA Statistics Matches: 17, Mismatches: 2, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 21 17 1.00 ACGTcount: A:0.45, C:0.12, G:0.33, T:0.10 Consensus pattern (21 bp): AGAACCAAGAAGAGTTCGAAG Done.