Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold1876.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 534

Length: 891
ACGTcount: A:0.42, C:0.14, G:0.19, T:0.24


Found at i:782 original size:21 final size:21

Alignment explanation


    Indices: 749--798  Score: 57
    Period size: 21  Copynumber: 2.3  Consensus size: 21

        739 TTGCAAGTTG

                         *        
        749 AAATAAAGAAGTTGGCTAATGA
          1 AAATAAAGAAGTTAGCTAA-GA

                  *               
        771 AAATAATG-AGTTAGCTAAGAA
          1 AAATAAAGAAGTTAGCTAAG-A

                   
        792 AAATAAA
          1 AAATAAA

        799 AACTTGCATA


Statistics
Matches: 24,  Mismatches: 3, Indels: 3
        0.80            0.10        0.10

Matches are distributed among these distances:
  20    1  0.04
  21   16  0.67
  22    7  0.29

ACGTcount: A:0.56, C:0.04, G:0.18, T:0.22


Consensus pattern (21 bp):   
AAATAAAGAAGTTAGCTAAGA
Done.