Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold193.71

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 585

Length: 975
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.28


Found at i:470 original size:16 final size:17

Alignment explanation


    Indices: 449--481  Score: 50
    Period size: 16  Copynumber: 2.0  Consensus size: 17

        439 CGTTCAATTA

                             
        449 CTCCTTTCTC-TTTCAT
          1 CTCCTTTCTCATTTCAT

                   *         
        465 CTCCTTTTTCATTTCAT
          1 CTCCTTTCTCATTTCAT

        482 TTTTCAAGCT


Statistics
Matches: 15,  Mismatches: 1, Indels: 1
        0.88            0.06        0.06

Matches are distributed among these distances:
  16    9  0.60
  17    6  0.40

ACGTcount: A:0.09, C:0.33, G:0.00, T:0.58


Consensus pattern (17 bp):   
CTCCTTTCTCATTTCAT
Done.