Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold194.26

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 536

Length: 894
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.31


Found at i:434 original size:12 final size:12

Alignment explanation


    Indices: 417--446  Score: 60
    Period size: 12  Copynumber: 2.5  Consensus size: 12

        407 TCAAGACAAG

                        
        417 GAGTTCTCAGTT
          1 GAGTTCTCAGTT

                        
        429 GAGTTCTCAGTT
          1 GAGTTCTCAGTT

                  
        441 GAGTTC
          1 GAGTTC

        447 CATTACTTCA


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   18  1.00

ACGTcount: A:0.17, C:0.17, G:0.27, T:0.40


Consensus pattern (12 bp):   
GAGTTCTCAGTT
Done.