Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold196.140

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 732

Length: 1221
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.23


Found at i:1018 original size:24 final size:26

Alignment explanation


    Indices: 982--1044  Score: 62
    Period size: 24  Copynumber: 2.6  Consensus size: 26

        972 GCCCTGTTAC

                 *  *        *        
        982 GATGCACAGAGAGGACCTA-GT-TAT
          1 GATGCTCAAAGAGGACCCACGTGTAT

                *                     
       1006 GATGGTCAAAGA-G-CCCACGTGTAT
          1 GATGCTCAAAGAGGACCCACGTGTAT

                           
       1030 GATGCTCAAAGAGGA
          1 GATGCTCAAAGAGGA

       1045 TCTGCGAATG


Statistics
Matches: 30,  Mismatches: 5, Indels: 6
        0.73            0.12        0.15

Matches are distributed among these distances:
  22    3  0.10
  23    3  0.10
  24   23  0.77
  25    1  0.03

ACGTcount: A:0.33, C:0.17, G:0.30, T:0.19


Consensus pattern (26 bp):   
GATGCTCAAAGAGGACCCACGTGTAT
Done.