Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Sequence: evm.model.Scaffold20.1 Parameters: 2 7 7 80 10 50 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 855 Length: 1425 ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23 Found at i:774 original size:12 final size:12 Alignment explanation
Indices: 759--788 Score: 51 Period size: 12 Copynumber: 2.5 Consensus size: 12 749 TGGGTATGAT 759 TAGAGGTAGGGG 1 TAGAGGTAGGGG 771 TAGAGGTAGGGG 1 TAGAGGTAGGGG * 783 AAGAGG 1 TAGAGG 789 AAGAAGGCAG Statistics Matches: 17, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 12 17 1.00 ACGTcount: A:0.30, C:0.00, G:0.57, T:0.13 Consensus pattern (12 bp): TAGAGGTAGGGG Done.