Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold20.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 855

Length: 1425
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23


Found at i:774 original size:12 final size:12

Alignment explanation


    Indices: 759--788  Score: 51
    Period size: 12  Copynumber: 2.5  Consensus size: 12

        749 TGGGTATGAT

                        
        759 TAGAGGTAGGGG
          1 TAGAGGTAGGGG

                        
        771 TAGAGGTAGGGG
          1 TAGAGGTAGGGG

            *     
        783 AAGAGG
          1 TAGAGG

        789 AAGAAGGCAG


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  12   17  1.00

ACGTcount: A:0.30, C:0.00, G:0.57, T:0.13


Consensus pattern (12 bp):   
TAGAGGTAGGGG
Done.