Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold202.5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2898
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.28


Found at i:426 original size:18 final size:18

Alignment explanation


    Indices: 403--437  Score: 61
    Period size: 18  Copynumber: 1.9  Consensus size: 18

        393 AGATTATTAC

                       *      
        403 GGGGAAGAGGAGGAGGAG
          1 GGGGAAGAGGAAGAGGAG

                             
        421 GGGGAAGAGGAAGAGGA
          1 GGGGAAGAGGAAGAGGA

        438 ATATCCTCAA


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   16  1.00

ACGTcount: A:0.37, C:0.00, G:0.63, T:0.00


Consensus pattern (18 bp):   
GGGGAAGAGGAAGAGGAG
Done.