Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold2039.19

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 212

Length: 354
ACGTcount: A:0.16, C:0.30, G:0.11, T:0.43


Found at i:254 original size:3 final size:3

Alignment explanation


    Indices: 248--283  Score: 54
    Period size: 3  Copynumber: 11.7  Consensus size: 3

        238 TCGACTCAGG

                          *                                
        248 TTC TTC TTC TTA TTC TTC TTC TTC TTC TTC TGTC TT
          1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T-TC TT

        284 TGGGATATTA


Statistics
Matches: 30,  Mismatches: 2, Indels: 2
        0.88            0.06        0.06

Matches are distributed among these distances:
   3   27  0.90
   4    3  0.10

ACGTcount: A:0.03, C:0.28, G:0.03, T:0.67


Consensus pattern (3 bp):   
TTC

Done.