Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold105.139

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2289
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26


Found at i:2070 original size:33 final size:33

Alignment explanation


    Indices: 2033--2113  Score: 162
    Period size: 33  Copynumber: 2.5  Consensus size: 33

       2023 CCCCAGACTT

                                             
       2033 TGCCTTATGCATCAGGGATGTCATTGCAGTCAC
          1 TGCCTTATGCATCAGGGATGTCATTGCAGTCAC

                                             
       2066 TGCCTTATGCATCAGGGATGTCATTGCAGTCAC
          1 TGCCTTATGCATCAGGGATGTCATTGCAGTCAC

                           
       2099 TGCCTTATGCATCAG
          1 TGCCTTATGCATCAG

       2114 CCGTGCCAGA


Statistics
Matches: 48,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  33   48  1.00

ACGTcount: A:0.21, C:0.25, G:0.23, T:0.31


Consensus pattern (33 bp):   
TGCCTTATGCATCAGGGATGTCATTGCAGTCAC
Done.