Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold1.170

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 975

Length: 1626
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28


Found at i:1025 original size:9 final size:9

Alignment explanation


    Indices: 1011--1035  Score: 50
    Period size: 9  Copynumber: 2.8  Consensus size: 9

       1001 ATGTTGAAGT

                     
       1011 AGATGATCA
          1 AGATGATCA

                     
       1020 AGATGATCA
          1 AGATGATCA

                   
       1029 AGATGAT
          1 AGATGAT

       1036 GCTGATGGGG


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   16  1.00

ACGTcount: A:0.44, C:0.08, G:0.24, T:0.24


Consensus pattern (9 bp):   
AGATGATCA
Done.