Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold21.310

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11739
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.30


Found at i:4798 original size:18 final size:18

Alignment explanation


    Indices: 4775--4832  Score: 116
    Period size: 18  Copynumber: 3.2  Consensus size: 18

       4765 ACAGCATTTC

                              
       4775 CTGAATTTGTACCCAAAT
          1 CTGAATTTGTACCCAAAT

                              
       4793 CTGAATTTGTACCCAAAT
          1 CTGAATTTGTACCCAAAT

                              
       4811 CTGAATTTGTACCCAAAT
          1 CTGAATTTGTACCCAAAT

                
       4829 CTGA
          1 CTGA

       4833 GGCAGCAATG


Statistics
Matches: 40,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   40  1.00

ACGTcount: A:0.33, C:0.22, G:0.12, T:0.33


Consensus pattern (18 bp):   
CTGAATTTGTACCCAAAT
Done.