Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: evm.model.Scaffold211.103

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 482

Length: 804
ACGTcount: A:0.22, C:0.08, G:0.44, T:0.26


Found at i:363 original size:18 final size:18

Alignment explanation


    Indices: 342--380  Score: 51
    Period size: 18  Copynumber: 2.2  Consensus size: 18

        332 CTGGTGGTTT

                 *            
        342 TGGAGGAGGAGGTGGAGG
          1 TGGAGAAGGAGGTGGAGG

                     * *      
        360 TGGAGAAGGTGTTGGAGG
          1 TGGAGAAGGAGGTGGAGG

               
        378 TGG
          1 TGG

        381 GGCTGATGGA


Statistics
Matches: 18,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.21, C:0.00, G:0.62, T:0.18


Consensus pattern (18 bp):   
TGGAGAAGGAGGTGGAGG

Found at i:466 original size:18 final size:18

Alignment explanation


    Indices: 445--486  Score: 68
    Period size: 18  Copynumber: 2.3  Consensus size: 18

        435 AGCTGAGACT

                               
        445 GGTGGAGGAGGG-GGTGGA
          1 GGTGGA-GAGGGTGGTGGA

                              
        463 GGTGGAGAGGGTGGTGGA
          1 GGTGGAGAGGGTGGTGGA

                  
        481 GGTGGA
          1 GGTGGA

        487 AGTGGTCATG


Statistics
Matches: 23,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
  17    5  0.22
  18   18  0.78

ACGTcount: A:0.17, C:0.00, G:0.69, T:0.14


Consensus pattern (18 bp):   
GGTGGAGAGGGTGGTGGA
Done.